BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus
Liberibacter asiaticus str. psy62]
         (370 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040010|gb|ACT56806.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 370

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/370 (100%), Positives = 370/370 (100%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF
Sbjct: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV
Sbjct: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE
Sbjct: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA
Sbjct: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG
Sbjct: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR
Sbjct: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360

Query: 361 IGTRYAKFYT 370
           IGTRYAKFYT
Sbjct: 361 IGTRYAKFYT 370


>gi|315122242|ref|YP_004062731.1| alanine racemase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495644|gb|ADR52243.1| alanine racemase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 348

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/348 (80%), Positives = 307/348 (88%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           MN LSG ARTAAVVKDNAYGLG EKIA  LYN+GVQDFFV  V EGVKLR Y P+A+IFV
Sbjct: 1   MNVLSGCARTAAVVKDNAYGLGFEKIAQTLYNSGVQDFFVAHVGEGVKLRAYVPKAKIFV 60

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142
           LYGIHPG+EKI+FD NLIPVISS  QLTFY KLMS G SHPYALQVDTGFNRLGLSLQEA
Sbjct: 61  LYGIHPGEEKILFDANLIPVISSSQQLTFYLKLMSNGFSHPYALQVDTGFNRLGLSLQEA 120

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGI 202
           L+F  N  NKK  +LSLI+SHLAC++DP S +NS QLE+F TL+  YKGIEASLASS+GI
Sbjct: 121 LNFAKNFSNKKSDKLSLIMSHLACSEDPVSLMNSSQLEQFLTLMKSYKGIEASLASSAGI 180

Query: 203 LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262
           LLG NYHFQLTRPGISLYGGT  INK +PMQTVVTAEARIILIR+A AGE++SYGGQKKL
Sbjct: 181 LLGENYHFQLTRPGISLYGGTPAINKLNPMQTVVTAEARIILIREAAAGEVISYGGQKKL 240

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
            R+SLIAVAAIGYADGYPLTLSG+D EH+ + F GGKGFIKGYMVPILGKITMD+TMFDI
Sbjct: 241 KRNSLIAVAAIGYADGYPLTLSGIDLEHNQAQFPGGKGFIKGYMVPILGKITMDITMFDI 300

Query: 323 TDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           TDS+ IE GDYI++FGP+IKLDDVALAS TTNYDLLVRIGTRYA+FYT
Sbjct: 301 TDSIGIEAGDYIEVFGPNIKLDDVALASRTTNYDLLVRIGTRYARFYT 348


>gi|325292459|ref|YP_004278323.1| Alanine racemase [Agrobacterium sp. H13-3]
 gi|325060312|gb|ADY64003.1| Alanine racemase [Agrobacterium sp. H13-3]
          Length = 391

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/365 (50%), Positives = 248/365 (67%), Gaps = 2/365 (0%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DL AL +NW  M   SG ARTAAVVK +AYGLG E     LY+AG +DFFV +V 
Sbjct: 22  LRLTVDLGALADNWRDMKKRSGKARTAAVVKADAYGLGIEDCGATLYHAGARDFFVATVS 81

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EG  LR Y P+ARIFVL GI  GQE+ +FD +L+PV++S  QL+F+   ++    HP AL
Sbjct: 82  EGATLRSYAPEARIFVLSGIWQGQERQVFDNDLVPVLASEEQLSFWMATVAERGEHPCAL 141

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTGFNRLGL L +AL    +          L++SHLACAD PSS +N VQLE FR + 
Sbjct: 142 HVDTGFNRLGLPLDDALFLADDVTRPASFDPVLVLSHLACADTPSSPMNKVQLESFRKVS 201

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + ++GIE+SL++S+GI LGP+YHF LTRPGI+LYGG    + ++PM+ V  AEARII IR
Sbjct: 202 AAFEGIESSLSASAGIFLGPDYHFDLTRPGIALYGGEAINDVANPMRPVAKAEARIIQIR 261

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +A  G+ VSYGG   L R S +A+A++GYADGY  +LSG           G  G + G+ 
Sbjct: 262 EAGEGQTVSYGGTYLLKRASRLAIASVGYADGYQRSLSGSGIPLREMGHGGAYGIVNGHK 321

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            P+ G++TMD+T+FDITD  + ++  GDYI++FGP + LD+VA A+GT  Y++L  +G R
Sbjct: 322 APVAGRVTMDLTIFDITDIPANAVRTGDYIELFGPKVPLDEVARAAGTIGYEMLTGLGLR 381

Query: 365 YAKFY 369
           Y + Y
Sbjct: 382 YERQY 386


>gi|241203930|ref|YP_002975026.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857820|gb|ACS55487.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 389

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/365 (50%), Positives = 247/365 (67%), Gaps = 2/365 (0%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DLTAL  NW  M   SG AR +AVVK +AYG+G E    ALY AG +DFFV +V+
Sbjct: 21  LRLTVDLTALTENWRDMARRSGAARASAVVKADAYGMGIEDAGEALYMAGARDFFVATVD 80

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV LRLY P+ARIFVL GI PG E+  FD +L+PVISS  QL F+  +++    +P AL
Sbjct: 81  EGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPVISSDEQLAFWMAVLADYGDYPCAL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTGFNRLGL + +A+    +          L++SHLACADDP+  +N  QLE F  + 
Sbjct: 141 HVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACADDPTHAMNRQQLESFHRVS 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG      ++PM+ V TAEARII +R
Sbjct: 201 AAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVSGMANPMRPVATAEARIIQVR 260

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE VSYG   +L R+S +A+A+ GYADGY  + S         V  GG+GFI G+ 
Sbjct: 261 SVAAGETVSYGRALQLRRESRLAIASAGYADGYMRSQSSGGVPLRQVVPQGGQGFIAGHK 320

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VP+ G+ITMD+T+FDITD    ++  GDY+++FG ++ +DDVA ASGT  Y++L  +G R
Sbjct: 321 VPVAGRITMDLTIFDITDLPDNAVRAGDYVELFGKNMPVDDVARASGTIGYEILTSMGLR 380

Query: 365 YAKFY 369
           + + Y
Sbjct: 381 HERRY 385


>gi|222148127|ref|YP_002549084.1| alanine racemase [Agrobacterium vitis S4]
 gi|221735115|gb|ACM36078.1| alanine racemase [Agrobacterium vitis S4]
          Length = 387

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 248/373 (66%), Gaps = 6/373 (1%)

Query: 3   SNEFL----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           S+EFL    R+ IDL AL +NW  M   SG AR  AVVK + YG+G E     LYNAG +
Sbjct: 11  SDEFLTAPLRVTIDLQALADNWRDMAKRSGKARAGAVVKADGYGIGIEDSGQTLYNAGAR 70

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           DFFV    EG  LR Y P ARIFVL GI  G E + F+ +L+PVI+S  QL F+ + ++ 
Sbjct: 71  DFFVALPSEGATLRTYAPDARIFVLSGIWEGMEPLFFEHDLVPVIASEEQLAFWMRTVAD 130

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
              HP AL VDTGFNRLGLS+ +AL    +          LI+SHLACADDPSS +N  Q
Sbjct: 131 QGDHPCALHVDTGFNRLGLSMDDALFLATDVSRPASFSPVLILSHLACADDPSSPMNQKQ 190

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           L+ F  + + ++GIE+SL++S+G LLGP+YHF LTRPGI+LYGG       +PM+ VV A
Sbjct: 191 LQAFHQVSAAFEGIESSLSASAGTLLGPDYHFDLTRPGIALYGGEAVTGLPNPMRPVVKA 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           EARI+ IR+A  GE VSYG   +LTR+S +AVA++GYADGY   LSG  +    +   G 
Sbjct: 251 EARILQIRQARNGETVSYGATCQLTRESRLAVASVGYADGYLRNLSGHGTALRDTGSPGA 310

Query: 299 KGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
            G I GY VP++G+ITMDMT+FD++D    +I  GDYI++FGP++ +DDVA A+GT  Y+
Sbjct: 311 YGSIAGYQVPVVGRITMDMTIFDVSDVPEKAIAAGDYIELFGPNMPIDDVARAAGTIGYE 370

Query: 357 LLVRIGTRYAKFY 369
           +L  +G RY + Y
Sbjct: 371 MLTGLGLRYERHY 383


>gi|222085428|ref|YP_002543958.1| alanine racemase [Agrobacterium radiobacter K84]
 gi|221722876|gb|ACM26032.1| alanine racemase [Agrobacterium radiobacter K84]
          Length = 387

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/368 (50%), Positives = 246/368 (66%), Gaps = 8/368 (2%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DL AL  NW  M   SG ART+AVVK +AYGLG E +  ALY AG +DFFV + +
Sbjct: 16  LRLTVDLDALVENWRDMAHRSGRARTSAVVKADAYGLGIEDVGEALYLAGARDFFVATAD 75

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EG  LRLY P ARIFVL GI PG E++ F+ +L+PVI+S  QLTF+  ++S    +P AL
Sbjct: 76  EGATLRLYAPDARIFVLSGIWPGMERVFFENDLVPVIASEEQLTFWMSVLSDYGDYPCAL 135

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVDTGFNRLGL +++AL    +          L++SHLAC DDP++ +N  QLE FR + 
Sbjct: 136 QVDTGFNRLGLPMEDALALADDVSRPASFAPVLVMSHLACGDDPANPMNRQQLEAFRKVS 195

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + ++GIEASLA+S+GI LGP YHF LTRPGI+ YGG      ++PM+ V TAEARII  R
Sbjct: 196 AAFEGIEASLANSAGIFLGPEYHFDLTRPGIATYGGEAVPGIANPMRPVATAEARIIQTR 255

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP---SVFLGGKGFIK 303
              AGE V YG   +LTRDS +A+ + GYADGY   + G  S   P   +   GG GFI 
Sbjct: 256 FVKAGETVGYGRAMQLTRDSRLAIVSAGYADGY---MRGQSSGGVPLRQTDLPGGHGFIA 312

Query: 304 GYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G+ VP+ G+ITMD+T+FDITD     +  GDY+++FG +I +DD A A+GT  Y++L  +
Sbjct: 313 GHRVPVAGRITMDLTIFDITDLPDNLVRAGDYVELFGSNILVDDAARAAGTIGYEMLTSL 372

Query: 362 GTRYAKFY 369
           G R+ + Y
Sbjct: 373 GLRHERRY 380


>gi|15888423|ref|NP_354104.1| alanine racemase [Agrobacterium tumefaciens str. C58]
 gi|20137302|sp|P58736|ALR1_AGRT5 RecName: Full=Alanine racemase, biosynthetic
 gi|15156111|gb|AAK86889.1| alanine racemase [Agrobacterium tumefaciens str. C58]
          Length = 391

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 183/365 (50%), Positives = 247/365 (67%), Gaps = 2/365 (0%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DL AL +NW  M   SG ARTAAVVK +AYGLG E     LY+AG +DFFV +V 
Sbjct: 22  LRLTVDLGALADNWRDMKKRSGRARTAAVVKADAYGLGIEDCGATLYHAGARDFFVATVA 81

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EG  LR Y P+ARIFVL GI  GQE+ +FD +L+PV++S  QL+F+   ++    HP AL
Sbjct: 82  EGATLRSYAPEARIFVLSGIWQGQERQVFDNDLVPVLASEEQLSFWMATVAERGDHPCAL 141

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTGFNRLGL L +AL    +          L++SHLACAD PSS +N  QLE FR + 
Sbjct: 142 HVDTGFNRLGLPLDDALFLADDVTRPASFDPVLVLSHLACADTPSSPMNRAQLESFRRVS 201

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + ++GIE+SL++S+GI LGP+YHF LTRPGI+LYGG    + ++PM+ V  AEARII IR
Sbjct: 202 AAFEGIESSLSASAGIFLGPDYHFDLTRPGIALYGGEAVNDVANPMRPVAKAEARIIQIR 261

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +A  G+ VSYG    L R S +A+A++GYADGY  +LSG           G  G + G+ 
Sbjct: 262 EAGEGQTVSYGSSFLLKRASRLAIASVGYADGYQRSLSGSGIPLREMGHGGAYGVVNGHK 321

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VP+ G++TMD+T+FD+TD  + +I  GDYI++FGP++ +D+ A A+GT  Y++L  +G R
Sbjct: 322 VPVAGRVTMDLTIFDVTDVPANAIRAGDYIELFGPNVPVDETARAAGTIGYEMLTGLGLR 381

Query: 365 YAKFY 369
           Y + Y
Sbjct: 382 YERQY 386


>gi|116251316|ref|YP_767154.1| alanine racemase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255964|emb|CAK07045.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 389

 Score =  366 bits (939), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 183/365 (50%), Positives = 247/365 (67%), Gaps = 2/365 (0%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DLTAL  NW  M   SG AR +AVVK +AYG+G E    ALY AG +DFFV +V+
Sbjct: 21  LRLTVDLTALTENWRDMARRSGAARASAVVKADAYGMGIEDAGEALYMAGARDFFVATVD 80

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV LRLY P+AR+FVL GI PG E+  F+ +L+PVISS  QL F+  +++    +P AL
Sbjct: 81  EGVTLRLYAPEARVFVLSGIWPGTERRFFENDLVPVISSDEQLAFWMAVLADYGDYPCAL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTGFNRLGL + +A+    +          L++SHLACADDP+  +N  QLE F  + 
Sbjct: 141 HVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACADDPTHAMNRQQLESFHRVS 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG      ++PM+ V TAEARII +R
Sbjct: 201 AAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGMANPMRPVATAEARIIQVR 260

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE VSYG   +L R+S +A+A+ GYADGY  + S         V  GG+GFI G+ 
Sbjct: 261 SVEAGETVSYGRALQLRRESRLAIASAGYADGYMRSQSSGGVPLRQVVPQGGQGFIAGHK 320

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VP+ G+ITMD+T+FDITD    ++  GDY+++FG ++ +DDVA ASGT  Y++L  +G R
Sbjct: 321 VPVAGRITMDLTIFDITDLPDNAVRAGDYVELFGKNMPVDDVARASGTIGYEILTSMGLR 380

Query: 365 YAKFY 369
           + + Y
Sbjct: 381 HERRY 385


>gi|227821452|ref|YP_002825422.1| alanine racemase [Sinorhizobium fredii NGR234]
 gi|227340451|gb|ACP24669.1| alanine racemase [Sinorhizobium fredii NGR234]
          Length = 409

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/375 (47%), Positives = 242/375 (64%), Gaps = 6/375 (1%)

Query: 1   MHSNEFL----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           MHS EFL    RL IDLTA+ +NW +MN  SG AR AAV+K NAYG+G  + AP LY AG
Sbjct: 31  MHSPEFLAASNRLTIDLTAIADNWRTMNERSGKARAAAVLKANAYGIGVAQAAPTLYAAG 90

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            +DFFV   EEG +LR   P ARI++L G+ PG E+  F  +L+P+I+S  QL  +   +
Sbjct: 91  ARDFFVADAEEGAELRPLLPDARIYILAGMWPGNEEFFFANDLVPIINSEEQLAVFMAAL 150

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           S    HP  L VDTG NRLGLS++EA+   H+          L++SHLAC DDP   +N 
Sbjct: 151 SERGDHPCVLHVDTGMNRLGLSVEEAIALAHDPARPASFSPVLVMSHLACGDDPRHPMNL 210

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
            QL+RFR + + ++G+ ASLA+S G+ LG +YHF LTRPGI++YGG    +  +PM+ VV
Sbjct: 211 YQLQRFREVTAAFEGVPASLANSGGVFLGEDYHFDLTRPGIAVYGGEAVNDALNPMKPVV 270

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           TAEARI+ +R   +G   SYG   +  RDS IA  AIGYADGY  ++SG       +   
Sbjct: 271 TAEARILQLRTVPSGGTASYGASARFARDSRIATVAIGYADGYHRSVSGGGVTLRQATPS 330

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
           G  GF+ G  VP +G++TMD+++FD+TD    ++  GDYI++FG ++ +DDVA A GT  
Sbjct: 331 GAYGFLHGKKVPHVGRVTMDLSLFDVTDLPERAVRAGDYIELFGRNVAIDDVARAGGTIG 390

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LL  +G RY + Y
Sbjct: 391 YELLTSLGHRYCRTY 405


>gi|327187996|gb|EGE55226.1| putative alanine racemase [Rhizobium etli CNPAF512]
          Length = 386

 Score =  352 bits (903), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 185/365 (50%), Positives = 247/365 (67%), Gaps = 2/365 (0%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DLTAL  NW  M   SG AR AAVVK +AYG+G E    ALY AG +DFFV +V+
Sbjct: 18  LRLTVDLTALTENWRDMARRSGAARAAAVVKADAYGMGIEDAGEALYTAGARDFFVATVD 77

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV LRLY P+ARIFVL GI PG E+  FD +L+PVISS  QL F+  +++    +P AL
Sbjct: 78  EGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPVISSEEQLAFWMAVLADYGDYPCAL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTGFNRLGL + +A+    +          L++SHLAC DDPS  +N  QLE FR + 
Sbjct: 138 HVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACGDDPSHAMNRQQLESFRRVT 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + Y+G+++SLA+S+GI LG +YHF+LTRPGI+LYGG      ++PM+ V TAEARII +R
Sbjct: 198 AAYEGVDSSLAASAGIFLGEDYHFELTRPGIALYGGEAVCGMANPMRPVATAEARIIQVR 257

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE VSYG   +L RDS +A+ + GYADGY  + S         V  GG+GFI G+ 
Sbjct: 258 TVKAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQSSGGVPLRQVVPQGGQGFIAGHK 317

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VP+ G+ITMD+T+FD+TD    ++  GDY+++FG ++ LDDVA A+GT  Y++L  +G R
Sbjct: 318 VPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKNVALDDVARAAGTIGYEILTSMGLR 377

Query: 365 YAKFY 369
           + + Y
Sbjct: 378 HERRY 382


>gi|209548649|ref|YP_002280566.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534405|gb|ACI54340.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 388

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/368 (51%), Positives = 249/368 (67%), Gaps = 8/368 (2%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DLTAL  NW  M   SG AR AAVVK +AYG+G E    ALY AG +DFFV +V+
Sbjct: 19  LRLTVDLTALTENWRDMAQRSGAARAAAVVKADAYGMGIEDAGEALYMAGARDFFVATVD 78

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV LRLY P ARIFVL GI PG E+  F+ +L+PVISS  QL F+  +++    +P AL
Sbjct: 79  EGVTLRLYAPDARIFVLSGIWPGTERRFFENDLVPVISSDEQLAFWMAVLADYGDYPCAL 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTGFNRLGL + +A+    +          L++SHLAC D+PS  +N  QLE FR + 
Sbjct: 139 HVDTGFNRLGLHMDDAIALADDVSRPASFAPVLVMSHLACGDEPSHAMNRQQLESFRRVS 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG      ++PM+ V TAEARII +R
Sbjct: 199 AAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGLANPMRPVATAEARIIQVR 258

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP---SVFLGGKGFIK 303
              AGE VSYG   +L R S +A+A+ GYADGY   + GL S   P   +V  GG+GFI 
Sbjct: 259 SVEAGETVSYGRALQLRRKSRLAIASAGYADGY---MRGLSSGGVPLRQAVPQGGQGFIA 315

Query: 304 GYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G+ VP+ G+ITMD+T+FDITD    ++  GDY+++FG ++ LDDVA A+GT  Y++L  +
Sbjct: 316 GHKVPVAGRITMDLTIFDITDLPDNAVRAGDYVELFGKNMPLDDVARAAGTIGYEILTSM 375

Query: 362 GTRYAKFY 369
           G R+ + Y
Sbjct: 376 GLRHERRY 383


>gi|15964880|ref|NP_385233.1| putative alanine racemase protein [Sinorhizobium meliloti 1021]
 gi|307300951|ref|ZP_07580720.1| alanine racemase [Sinorhizobium meliloti BL225C]
 gi|307321854|ref|ZP_07601240.1| alanine racemase [Sinorhizobium meliloti AK83]
 gi|20137219|sp|Q92R07|ALR_RHIME RecName: Full=Alanine racemase
 gi|15074059|emb|CAC45706.1| Putative alanine racemase [Sinorhizobium meliloti 1021]
 gi|306892523|gb|EFN23323.1| alanine racemase [Sinorhizobium meliloti AK83]
 gi|306903906|gb|EFN34492.1| alanine racemase [Sinorhizobium meliloti BL225C]
          Length = 379

 Score =  345 bits (885), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 181/375 (48%), Positives = 243/375 (64%), Gaps = 6/375 (1%)

Query: 1   MHSNEFL----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M S EFL    RL +DLTAL +NW +MN  SG AR AAV+K +AYGLG    APALY AG
Sbjct: 1   MQSPEFLSASSRLTVDLTALADNWRAMNERSGKARAAAVLKADAYGLGVVHAAPALYAAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            +DFFV SVEEG  LR   P  RI++L G+ PG E++ F+ +L+P+I+S  QL  +   +
Sbjct: 61  ARDFFVASVEEGADLRPLVPDGRIYILAGMWPGNEELFFENDLVPIINSEEQLAVFMAAL 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           S    HP  L VDTG NRLGLS +EAL   H+          L++SHLACADDP   +N 
Sbjct: 121 SERGDHPCVLHVDTGMNRLGLSPEEALALAHDPARPASFSPVLVMSHLACADDPGHPMNR 180

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
            QL+RFR + + ++G+ ASLA+S G+ LG +YHF LTRPGI++YGG       +PM+ VV
Sbjct: 181 YQLQRFREVTAAFEGVPASLANSGGVFLGADYHFDLTRPGIAVYGGEAVNGAVNPMKAVV 240

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           TAEARI+ +R   +G   SYG   +  RDS IA  AIGYADGY  ++SG       ++  
Sbjct: 241 TAEARIVQVRTVPSGGTASYGASVRFGRDSRIATVAIGYADGYHRSVSGGGVTLRQAMPS 300

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
           G  GF+ G  VP +G++TMD+++FD+TD    ++  GDYI++FG ++ +DDVA A GT  
Sbjct: 301 GAFGFLHGMKVPHVGRVTMDLSLFDVTDLPEAAVRAGDYIEVFGRNVVIDDVARAGGTIG 360

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LL  +G RY + Y
Sbjct: 361 YELLTSLGRRYHRTY 375


>gi|150395954|ref|YP_001326421.1| alanine racemase [Sinorhizobium medicae WSM419]
 gi|150027469|gb|ABR59586.1| alanine racemase [Sinorhizobium medicae WSM419]
          Length = 408

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 239/364 (65%), Gaps = 2/364 (0%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL +DL AL +NW  MN  SG AR AAV+K NAYGLG  + APALY AG +DFFV SVEE
Sbjct: 41  RLTVDLAALADNWRMMNERSGRARAAAVLKGNAYGLGVMQAAPALYAAGARDFFVASVEE 100

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G +LR   P+ R++VL G+ PG E + F+ +L+P+I+S  QL ++   +S    HP  L 
Sbjct: 101 GAELRPLVPEGRVYVLAGMWPGNEALFFENDLVPIINSQEQLAYFMAALSERGDHPCVLH 160

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NRLGLS +EAL   H+          L++SHLACADDP   +N  QL+RFR + +
Sbjct: 161 VDTGMNRLGLSPEEALRLVHDPVRPASFSPVLVMSHLACADDPGHPMNRHQLQRFREVTA 220

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            ++G+ ASLA+S G+ LG +YHF LTRPGI++YGG       +PM+ VV AEARI+ IR 
Sbjct: 221 FFEGVPASLANSGGVFLGEDYHFDLTRPGIAVYGGEAVDGDVNPMKPVVIAEARIVQIRT 280

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             +GE  SYG   +  RDS IA  AIGYADGY  ++SG       ++  G  GF+ G  V
Sbjct: 281 VPSGESASYGASVRFGRDSRIATVAIGYADGYHRSVSGGGVTLRQAMPSGAFGFLHGRKV 340

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P +G++TMD+++FD+TD    ++  GDYI++FG +I +DDVA A GT  Y+LL  +G RY
Sbjct: 341 PHVGRVTMDLSLFDVTDLPESTVRAGDYIELFGRNIPIDDVARAGGTIGYELLTSLGRRY 400

Query: 366 AKFY 369
            + Y
Sbjct: 401 HRTY 404


>gi|190891117|ref|YP_001977659.1| alanine racemase [Rhizobium etli CIAT 652]
 gi|190696396|gb|ACE90481.1| alanine racemase protein [Rhizobium etli CIAT 652]
          Length = 333

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 160/329 (48%), Positives = 221/329 (67%), Gaps = 2/329 (0%)

Query: 43  LGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102
           +G E    ALY AG +DFFV +V+EGV LRLY P+ARIFVL GI PG E+  FD +L+PV
Sbjct: 1   MGIEDAGEALYTAGARDFFVATVDEGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPV 60

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
           ISS  Q  F+  +++    +P AL VDTGFNRLGL + +A+    +          L++S
Sbjct: 61  ISSDEQFAFWMAVLADYGDYPCALHVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMS 120

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
           HLAC DDPS  +N  QLE FR + + Y+G+++SLA+S+GI LG +YHF+LTRPGI+LYGG
Sbjct: 121 HLACGDDPSHAMNRQQLESFRRVTAAYEGVDSSLAASAGIFLGEDYHFELTRPGIALYGG 180

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                 ++PM+ V TAEAR+I +R   AGE VSYG   +L RDS +A+ + GYADGY  +
Sbjct: 181 EVVCGMANPMRPVATAEARVIQVRTVKAGETVSYGRALQLPRDSRLAIVSAGYADGYMRS 240

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPD 340
            S         V  GG+GFI G+ VP+ G+ITMD+T+FD+TD    ++  GDY+++FG +
Sbjct: 241 QSSGGVPLRQVVPQGGQGFIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKN 300

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + LDDVA A+GT  Y++L  +G R+ + Y
Sbjct: 301 VALDDVARAAGTIGYEILTSMGLRHERRY 329


>gi|86357070|ref|YP_468962.1| alanine racemase protein [Rhizobium etli CFN 42]
 gi|86281172|gb|ABC90235.1| alanine racemase protein [Rhizobium etli CFN 42]
          Length = 333

 Score =  322 bits (824), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 161/329 (48%), Positives = 220/329 (66%), Gaps = 2/329 (0%)

Query: 43  LGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102
           +G E    ALY AG +DFFV +V+EGV LRLY P+ARIFVL GI PG E+  FD +L+PV
Sbjct: 1   MGIEDAGEALYLAGARDFFVATVDEGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPV 60

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
           ISS  Q  F+  +++    +P AL VDTGFNRLGL + +A+    +          L++S
Sbjct: 61  ISSDEQFAFWMAVLADYGDYPCALHVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMS 120

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
           HLAC DDPS  +N  QLE FR + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG
Sbjct: 121 HLACGDDPSHLMNRQQLESFRKVTAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGG 180

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                 ++PM+ V T EARII +R   AGE VSYG   +L RDS +A+ + GYADGY  +
Sbjct: 181 EAVCGVTNPMRPVATTEARIIQVRTVKAGETVSYGRALQLHRDSRLAIVSAGYADGYMRS 240

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPD 340
            S        +V  GG+GFI G+ VP+ G+ITMD+T+FD+TD    ++  GDY+++FG +
Sbjct: 241 QSSGGVPLRQAVPQGGQGFIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKN 300

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + LDDVA A+GT  Y++L  +G R+ + Y
Sbjct: 301 MALDDVARAAGTIGYEILTSMGLRHERRY 329


>gi|163760547|ref|ZP_02167628.1| putative alanine racemase protein [Hoeflea phototrophica DFL-43]
 gi|162282162|gb|EDQ32452.1| putative alanine racemase protein [Hoeflea phototrophica DFL-43]
          Length = 374

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/365 (44%), Positives = 219/365 (60%), Gaps = 9/365 (2%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+ +DLTAL  NW S+  LSG+AR  A VK + YG+G  + A  L   G +DFFV    E
Sbjct: 16  RMSVDLTALAANWLSLRELSGSARCGAAVKADGYGIGAIEAASRLAREGCRDFFVADANE 75

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G  LR + P  RI VL G+       I   +L+PVI+S  Q  F++          YAL 
Sbjct: 76  GASLRPHLPDVRIHVLNGVFEDSFAQILAHDLVPVINSTEQAAFWTGTAD---GRAYALH 132

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL+ ++A  +  +         +L++SH ACAD+P   +N+ Q+E F  L +
Sbjct: 133 IDTGMNRLGLTPEQAAAYAQSDAPPP----ALLMSHFACADEPGHPLNARQIEMFEALKA 188

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            +  IEASLA+S+GI LG   H  LTRPGISLYGG    + +  M+ VVTAE R++ IR+
Sbjct: 189 CFPSIEASLANSAGIHLGKPAHHDLTRPGISLYGGNPVADANPKMRPVVTAETRVLQIRQ 248

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
           A AG+ VSYG    L+RDS IAV  IGYADG+    SG       +   G  G I G  V
Sbjct: 249 ARAGQPVSYGAAHFLSRDSRIAVCGIGYADGFLRAGSGAGVPLRSAAPKGAFGAINGKRV 308

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++GKITMD+TMFD+TD     I  G +I++FGP I L++ A A+GT +Y++L  +G R+
Sbjct: 309 PVIGKITMDLTMFDVTDLGEDEIGAGSWIELFGPTISLEEAAQAAGTISYEMLTSLGRRH 368

Query: 366 AKFYT 370
           A+ YT
Sbjct: 369 ARRYT 373


>gi|218662157|ref|ZP_03518087.1| putative alanine racemase [Rhizobium etli IE4771]
          Length = 325

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 163/316 (51%), Positives = 207/316 (65%), Gaps = 11/316 (3%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DLTAL  NW  M   SG AR AAVVK +AYGLG E    ALY AG +DFFV +V+
Sbjct: 21  LRLTVDLTALTENWRDMARRSGAARAAAVVKADAYGLGIEDAGEALYTAGARDFFVATVD 80

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV LRLY P ARIFVL GI PG E+  FD +L+PVISS  QL F+  +++    +  AL
Sbjct: 81  EGVTLRLYAPDARIFVLSGIWPGTERRFFDNDLVPVISSDEQLAFWMAVLADYGDYSCAL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTGF   G         T  SF   L     ++SHLAC DDP++ +N  QLE FR + 
Sbjct: 141 HVDTGFTGWGCIS------TMPSFAPVL-----VMSHLACGDDPTNAMNRQQLESFRRVT 189

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG      ++PM+ V TAEARII +R
Sbjct: 190 AAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGMANPMRPVATAEARIIQVR 249

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE VSYG   +L RDS +A+ + GYADGY  + S        +V  GG+GFI G+ 
Sbjct: 250 TVGAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQSSGGVPLRQAVPQGGQGFIAGHK 309

Query: 307 VPILGKITMDMTMFDI 322
           VP+ G+ITMD+T+FD+
Sbjct: 310 VPVAGRITMDLTIFDV 325


>gi|110633340|ref|YP_673548.1| alanine racemase [Mesorhizobium sp. BNC1]
 gi|110284324|gb|ABG62383.1| alanine racemase [Chelativorans sp. BNC1]
          Length = 389

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/369 (42%), Positives = 229/369 (62%), Gaps = 11/369 (2%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL +DL+AL  N+  +   S  A  AAV+K +AYGLG + +  AL+ AG + FFV   +E
Sbjct: 20  RLTVDLSALVANYQLLARRSAPAGAAAVLKADAYGLGLKPVGSALWAAGCRRFFVALPQE 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125
           G++LR   P+A IFVL G+   +    + +  LIPV++S   ++ + +   +   S P A
Sbjct: 80  GIELRAILPEAEIFVLTGLFAVESAAAYREARLIPVLNSQSDISIWEAHGWNDQRSRPCA 139

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLERFR 183
           + VDTG NRLGL+ + A        N   G L+  L++SHLACAD P   +N  QLE F+
Sbjct: 140 VHVDTGMNRLGLTPERARSLAEE--NALTGALTPILLMSHLACADTPDHPLNRRQLELFQ 197

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            + + +   E+SL +S+GI LG ++   LTRPGI+LYGG      ++PM+ V T EAR++
Sbjct: 198 AVRTLFPQSESSLCNSAGIFLGSDFLCDLTRPGIALYGGAPVKGIANPMRAVATVEARVV 257

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE VSYG    L RDS+IAV + GYADGY L  SG       +V    +GFI 
Sbjct: 258 QVRHVRAGETVSYGA-TPLARDSVIAVCSAGYADGYHLAGSGDRVPLRRAVRKAAEGFIH 316

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEV---GDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           G  VP++G++TMD+T+FD+T+ + ++V   GD+I++FGP++ +D+VA A+GT  Y+LL  
Sbjct: 317 GRRVPVVGRVTMDLTLFDVTE-VGMDVIAPGDHIELFGPNMPIDEVAEAAGTIAYELLTS 375

Query: 361 IGTRYAKFY 369
           +G RY + Y
Sbjct: 376 LGRRYYREY 384


>gi|307946726|ref|ZP_07662061.1| alanine racemase [Roseibium sp. TrichSKD4]
 gi|307770390|gb|EFO29616.1| alanine racemase [Roseibium sp. TrichSKD4]
          Length = 400

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 204/366 (55%), Gaps = 10/366 (2%)

Query: 8   RLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL IDL A+  NW  + N LS  A  AA VK +AYG G  + + ALY+ G + FFV    
Sbjct: 37  RLTIDLKAITANWTILKNKLSDRAECAATVKADAYGTGLTQASKALYDDGCRTFFVALPV 96

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E +KL    P A I+VL G+ PG  K + +  + PV++S  ++  ++      G  HP A
Sbjct: 97  EALKLCRGMPDATIYVLDGLFPGTAKTLAENGIRPVLASTDEVQEWAAFCRETGQHHPAA 156

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VDTG +RLGLS  E  +   N   +++   SLI+SHLAC  DP   +NS QL+RF+ L
Sbjct: 157 LHVDTGIHRLGLSAAEFEEVMLNGDIREVFTPSLIMSHLACGADPEHPMNSEQLKRFKNL 216

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            S Y  I  SLA+S+G+ LG +YHF L RPGISLYGG       +PMQ  V  EARI++ 
Sbjct: 217 TSAYPDIPKSLANSAGVFLGEDYHFDLVRPGISLYGGKALDTMPNPMQPAVKVEARIMMA 276

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ + YG  +   RD  +AV A GYADG       +    S  +  G    I+G+
Sbjct: 277 RSVPQGDTIGYGAMQTARRDLRVAVVAAGYADGM------MRRAGSTDIAPGAYAMIEGH 330

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             P+LG+++MDM   D+TD        G ++++ GP +   D+A  + T +Y+ L  +G 
Sbjct: 331 KAPLLGRVSMDMITLDVTDISPHLTRRGAFVEMMGPQLAASDLAAYADTIDYEYLTNLGR 390

Query: 364 RYAKFY 369
           R+ + Y
Sbjct: 391 RFLRRY 396


>gi|298291077|ref|YP_003693016.1| alanine racemase [Starkeya novella DSM 506]
 gi|296927588|gb|ADH88397.1| alanine racemase [Starkeya novella DSM 506]
          Length = 374

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 211/365 (57%), Gaps = 13/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+AL  N+  + A    A+ AAVVK +AYGLG    A  L++AG + FFV  + E 
Sbjct: 15  LTIDLSALAANFRDVAARVAPAKCAAVVKGDAYGLGLVPTASTLWHAGARTFFVALLSEA 74

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
            KLR   P A IFVL G+ PG E       L+PV+ SVP++  + +     G   P AL 
Sbjct: 75  RKLRELLPDAEIFVLNGLFPGTEATYQQHALLPVLGSVPEIERWQQFCERTGEPLPAALH 134

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VDTG NRLGLS  EA++        +LG  L+L++SHLACAD+P   +   QLE F+ ++
Sbjct: 135 VDTGMNRLGLSAAEAVNVAEG--RDELGFPLALLMSHLACADEPGHPLTDRQLEDFQAIV 192

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + +  + ASLA+S+G L  P+ HF L RPGI++YG   + + + P+Q VV  + RI+ IR
Sbjct: 193 ALFPDVRASLANSAGALGDPSLHFDLVRPGIAVYGARPRADVA-PLQPVVRLDLRIVQIR 251

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   GE + YG      R+S +A+ + GYADG P   S  D      +  G +  + G+ 
Sbjct: 252 RVHEGETIGYGAAHTAKRESRVAILSAGYADGIPRLASASD------LRPGAEAVVGGHR 305

Query: 307 VPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            P++G+I+MD+   DIT  D  ++  GD+  + G  + L+D+A  S T +Y++L  +G R
Sbjct: 306 CPLIGRISMDLLAVDITDVDEDAVAAGDFATLLGDGLALEDLARHSATIDYEILTSLGRR 365

Query: 365 YAKFY 369
           Y + +
Sbjct: 366 YHRRW 370


>gi|154253914|ref|YP_001414738.1| alanine racemase [Parvibaculum lavamentivorans DS-1]
 gi|154157864|gb|ABS65081.1| alanine racemase [Parvibaculum lavamentivorans DS-1]
          Length = 408

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 202/367 (55%), Gaps = 7/367 (1%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  N+  + A +  A  +AVVK NAYGLG   +A  L   G + FFV    EG
Sbjct: 29  LTIDLDAVAANYDMLRAEAAGAEVSAVVKANAYGLGMGPVARRLAAEGCRSFFVAEANEG 88

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             LR   P A I+VL G+ PG         L+P ++S+ ++  + +    G S   AL  
Sbjct: 89  AALRALLPDAEIYVLNGLFPGTAGFYAAHGLVPCLASMAEVAEWREAAKGG-SLKAALHF 147

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR----T 184
           DTG NRLG+S  +A             ++ LI+SHLACADD +S +N+ QL RFR     
Sbjct: 148 DTGMNRLGMSEADAAALAAEGALTAGIEVRLIMSHLACADDAASPMNARQLARFRGLRTI 207

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           L   + G +ASLA+S GI LG +YHF L RPG+SLYGG+    + HP +  VT EAR++ 
Sbjct: 208 LAGRFAGAKASLANSGGIYLGKDYHFDLVRPGVSLYGGSPFTGREHPFRPAVTVEARVLA 267

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  A E   YG   K    + +AV A GYADGY   LS            GG+  I G
Sbjct: 268 VREMAAEETAGYGATWKARGTARMAVLAAGYADGYMRALSSPRPNGDGGDDYGGQVRIAG 327

Query: 305 YMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           Y  P+ G+I+MDM + D++     +++ GD  ++ GP I +DDV L +GT  Y++L  +G
Sbjct: 328 YTAPVAGRISMDMLIVDVSGLPEGAVKRGDMAELIGPHITVDDVGLKAGTLGYEILTSLG 387

Query: 363 TRYAKFY 369
            RY + Y
Sbjct: 388 GRYMRIY 394


>gi|46201989|ref|ZP_00208341.1| COG0787: Alanine racemase [Magnetospirillum magnetotacticum MS-1]
          Length = 371

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/365 (39%), Positives = 201/365 (55%), Gaps = 14/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ID+ A+  NW  ++AL   A  +AVVK + YGLG E IAPAL  AG Q FFV  V EG
Sbjct: 11  LTIDVAAIVANWKRLSALVAPAEASAVVKADCYGLGMEHIAPALSAAGCQSFFVACVNEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
           + LR   P A I VL G   G E      NLIPV++S+ Q+T ++     G   P A + 
Sbjct: 71  IALRRILPAAVIHVLSGPLGGDEGEFAAHNLIPVLNSLAQITGWAGFAKKGSGAPAAAIH 130

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGLS  E              +  L++SHLACADD  S +N+ QL   R L S
Sbjct: 131 IDTGMNRLGLSETELERLAAKPEITAAIRPILVMSHLACADDADSPMNARQLTTLRRLAS 190

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
           H   +  S+A+SSGI LG  +H  L RPG +LYG      + +PM  VV  + +I+ +R 
Sbjct: 191 HLPALPQSIAASSGIFLGRGFHLGLVRPGAALYGLNPMPGRPNPMSQVVKLQGKIVQVRD 250

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             + + V YG   ++     +AV A+GYADG+  +LS             G G I G  V
Sbjct: 251 VDSPQTVGYGATHRVEGKRKLAVVAVGYADGWFRSLSNR-----------GHGMIGGMKV 299

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P+ G+I+MD+T FD+TD  +     G +I++ GPD+  D VA  +GT  Y++L  +G R+
Sbjct: 300 PVAGRISMDLTTFDVTDVPAEHAHPGAWIELIGPDLSPDRVADEAGTIGYEILTSLGRRH 359

Query: 366 AKFYT 370
            + +T
Sbjct: 360 HRRWT 364


>gi|328544029|ref|YP_004304138.1| Alanine racemase, biosynthetic [polymorphum gilvum SL003B-26A1]
 gi|326413773|gb|ADZ70836.1| Alanine racemase, biosynthetic [Polymorphum gilvum SL003B-26A1]
          Length = 415

 Score =  253 bits (645), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 202/366 (55%), Gaps = 10/366 (2%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +D  A+ +NW ++   L   AR AA VK +AYG G      AL  +G   FFV    E
Sbjct: 49  LTVDTAAIADNWRALAGQLGPGARCAATVKADAYGCGIPATVRALAASGCDTFFVALPAE 108

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G+ +R   P A I+VL G+ PG      +  L PV+ S+P+L  ++    S  V    A+
Sbjct: 109 GIAVREAAPGATIYVLDGLFPGTAPAYAEARLRPVLGSLPELEEWALFCRSRKVRLEAAV 168

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTG NRLGL+ QEA     +        L+L+ISHLAC  +P   +N  QLERFRTL 
Sbjct: 169 HVDTGMNRLGLTEQEAERLAGDRDLLDSFALALVISHLACGAEPGHPLNRQQLERFRTLS 228

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            H+     SLA+S+GI LG +YHF L RPGI+LYGG    +  +PM+ V   EARI+ +R
Sbjct: 229 GHFPDAVRSLANSAGIFLGADYHFDLVRPGIALYGGKALDSFDNPMRPVARVEARILQLR 288

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE V YG  + + RD+ +AV A GYADG      G D         GG G+I G+ 
Sbjct: 289 TVRAGEGVGYGLAQTVRRDTRLAVVAAGYADGLLRRAGGSDDRP------GGHGWIVGHR 342

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VP+ G+I+MDM   D+TD  +  +  G  +++ GP +   ++A  + T +Y+ L  +G R
Sbjct: 343 VPVFGRISMDMQALDVTDVPAALLRRGAMVELIGPHVAASELAAVADTIDYEYLTALGRR 402

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 403 FHRRYA 408


>gi|254473465|ref|ZP_05086862.1| alanine racemase [Pseudovibrio sp. JE062]
 gi|211957581|gb|EEA92784.1| alanine racemase [Pseudovibrio sp. JE062]
          Length = 383

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 210/366 (57%), Gaps = 9/366 (2%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +L IDLTAL++NW  +N   G+  T AVV K N YG G  ++   LY+AG + FFV   E
Sbjct: 21  KLTIDLTALRSNWCYLNGKVGDGCTCAVVLKANGYGTGAAEVGKTLYHAGARVFFVALPE 80

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           EG++LR   P A I+VL G+   +EK  +D +L PV++S+ ++  +S    S     P A
Sbjct: 81  EGIELRKELPHAEIYVLNGLFRHREKFYYDFDLKPVLNSLEEVAEWSSFAQSLQEELPAA 140

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L  DTG +RLG+S+ +AL    ++   K  ++ L++SHLACAD P   +N  QL RF+ +
Sbjct: 141 LHFDTGMHRLGMSIGDALQIGESAHLLKSIRIDLVMSHLACADTPDHGLNEKQLNRFQRV 200

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
              +     SL++S+GI LG +YHF + RPGI+LYGG    ++++PM  V   +A II +
Sbjct: 201 CELFPEARKSLSNSAGIFLGDDYHFDMVRPGIALYGGNPVPDETNPMLPVAHVQAEIISL 260

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+   G+ V YG  +   R S IA    GYADG    +   D + +     G + +I G+
Sbjct: 261 REVPHGDPVGYGASRVTPRKSRIATINAGYADGLHRLVGSSDDQPN-----GARVYIGGH 315

Query: 306 MVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             PI G+++MDM   D+TD     +  G  ++I G  + +D++A  + T  Y+LL  +G 
Sbjct: 316 FAPIFGRVSMDMIAVDVTDIPEEHLSRGAPVEIMGAHVNVDELAEFAQTIPYELLCSLGA 375

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 376 RYTRHY 381


>gi|154246344|ref|YP_001417302.1| alanine racemase [Xanthobacter autotrophicus Py2]
 gi|154160429|gb|ABS67645.1| alanine racemase [Xanthobacter autotrophicus Py2]
          Length = 357

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 145/363 (39%), Positives = 210/363 (57%), Gaps = 11/363 (3%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +NW ++ AL+  A  AAVVK NAYGLG +++AP L+ AG ++FFV   +E V 
Sbjct: 1   MDLGAIADNWRTIAALAAPAECAAVVKANAYGLGIDRVAPVLWRAGARNFFVAHFKEAVA 60

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVD 129
           LR   P+A I+VL G+ P         NL PV+ S P+++ +S      GV  P A+ VD
Sbjct: 61  LRALLPEAIIYVLNGLLPDCAADYAAANLRPVLGSTPEISDWSDYCRDAGVKLPAAIHVD 120

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           TG +RLGLSL+EA+  +  +F       SLI+SHLACAD P   + + Q   F  ++  +
Sbjct: 121 TGMHRLGLSLEEAVQLS-GTFRLLGFTPSLIMSHLACADTPGHVLTARQRMVFADVVRRF 179

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249
            GI  SLA+S+G LLG ++ F+L RPGI LYGG   IN   P++ VV  E +++ +  A 
Sbjct: 180 PGIPGSLANSAGTLLGRDFRFELVRPGIFLYGGI-AINGVPPLRPVVRLEVKVVQVSTAP 238

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
           AGE V YG  ++L R S +A  +IGYADG         +  S     G +  + G    +
Sbjct: 239 AGETVGYGAAQRLKRPSRLATVSIGYADGL------FRAGGSTDAIKGVEAIVHGQRCHL 292

Query: 310 LGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           +G+++MD+   DITD     ++ GD     G  I +DD+A  SGT  Y++L  +G RYA+
Sbjct: 293 VGRVSMDLATLDITDLPDGVVQRGDTAVFLGDGISVDDLAARSGTIGYEVLTSLGARYAR 352

Query: 368 FYT 370
            Y 
Sbjct: 353 HYV 355


>gi|170751205|ref|YP_001757465.1| alanine racemase [Methylobacterium radiotolerans JCM 2831]
 gi|170657727|gb|ACB26782.1| alanine racemase [Methylobacterium radiotolerans JCM 2831]
          Length = 377

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 199/365 (54%), Gaps = 16/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + A +G A  AAVVK +AYGLG +++AP L  AG + FFV  V EG
Sbjct: 22  LTIDLAALAENYRLLAARAGTATCAAVVKADAYGLGADRVAPVLAAAGCRHFFVAQVGEG 81

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYAL 126
           V LR +  P A I VL G  PG E    D +L+PV++ + QL  +           P  L
Sbjct: 82  VALRSILGPGAVIAVLNGAAPGSEATCADHDLVPVLNDLSQLDGWQGLARRRARRLPAIL 141

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVDTG  R G +  E               L L++SHLACA +P S VN+ QL  FR + 
Sbjct: 142 QVDTGMARFGFAPDEVGALLDRPDALAGLDLRLVMSHLACAGEPDSPVNAAQLSVFRAVR 201

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                + ASLA+SSGI LGP++HF L RPG +LYG   +    +PM+ V+   AR++  R
Sbjct: 202 RRLPAVPASLAASSGIFLGPDFHFDLVRPGAALYGIAPQEGAPNPMRPVIGLRARVMQTR 261

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YG    + RDS +A  AIGYADG+  + +            GG  +  G  
Sbjct: 262 SVPAGTPVGYGHAATVARDSRLATVAIGYADGFFRSTA------------GGAAWFGGVR 309

Query: 307 VPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +P++G+++MD  + D+TD+   ++  G  + I GP+  +D  A A+GT  Y++L  +G R
Sbjct: 310 LPVVGRVSMDSLVLDVTDAAPGTLGPGALVDIVGPERDVDAAAAAAGTIGYEVLTNLGHR 369

Query: 365 YAKFY 369
           + + Y
Sbjct: 370 FHRVY 374


>gi|118588136|ref|ZP_01545546.1| alanine racemase [Stappia aggregata IAM 12614]
 gi|118439758|gb|EAV46389.1| alanine racemase [Stappia aggregata IAM 12614]
          Length = 380

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 210/369 (56%), Gaps = 16/369 (4%)

Query: 8   RLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL IDL A+ +NW  + + + G    AAV+K +AYG G +K A ALY AG + FFV    
Sbjct: 17  RLTIDLDAIVSNWSLLKDKVGGGTDCAAVLKADAYGTGQDKTAAALYQAGCRTFFVAVPT 76

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E + LR   P A I+VL G+ PG  +     ++ PV+ S+ +L  +S++      S P A
Sbjct: 77  EALTLRASLPDAVIYVLDGLFPGTAEHFLKHDIRPVLGSLEELVEWSEICRGASKSFPAA 136

Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLG--QLSLIISHLACADDPSSHVNSVQLERF 182
           + V+TG +RLGL+ +E   FT   S    LG  Q SL++SHLAC  +P   +N  QL+ F
Sbjct: 137 VHVNTGIHRLGLTPEE---FTQALSDTAALGPFQPSLVMSHLACGSNPDHPMNRRQLKLF 193

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
               + +  I  SLA+S+G+LLGP YHF + RPGI+LYGG     + +PM+ V   EARI
Sbjct: 194 TETTAPFPLIPRSLANSAGVLLGPEYHFDVVRPGIALYGGLAIETEPNPMKPVAKVEARI 253

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +++R    G+ + YG ++  TR    AV A GYADG  +  +G   E       GG G I
Sbjct: 254 MMVRDVPKGDTIGYGAKQTATRPLRNAVVAAGYADGM-IRRAGSTDERP-----GGFGTI 307

Query: 303 KGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            GY  PILG+I+MDM   D+TD     +  G ++++ GP +   D+A  + T +Y+ L  
Sbjct: 308 GGYKAPILGRISMDMITLDVTDVPDHLLRRGAFVEMLGPGVAASDLAAYAETIDYEYLTS 367

Query: 361 IGTRYAKFY 369
           +G R+ + Y
Sbjct: 368 LGRRFERVY 376


>gi|58040489|ref|YP_192453.1| alanine racemase [Gluconobacter oxydans 621H]
 gi|58002903|gb|AAW61797.1| Alanine racemase [Gluconobacter oxydans 621H]
          Length = 367

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 211/364 (57%), Gaps = 18/364 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L + L A+  N++ + AL   A  A VVK +AYGL  +++AP L   G   FFV  ++EG
Sbjct: 17  LGVSLRAIAENYNLVAALGAGAECAVVVKADAYGLSADRVAPVLAARGAGTFFVAHLDEG 76

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
           + LR   P+ RIFVL+G  PG E  +   NL PV++ + Q+  + +L    G + P ALQ
Sbjct: 77  IALRAILPEVRIFVLHGFMPGCEGSMQAHNLFPVLNDLEQVRSWQRLCREKGCAFPAALQ 136

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG +R GLS Q   D    S  + L  L L++SHLACAD P +  N++Q +RF  + +
Sbjct: 137 FDTGMSRFGLSDQ---DLEDRSVFEGL-NLQLVMSHLACADTPDNPANAIQRKRFVEMAA 192

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+  SLA+SSGI LGP+YHF+L RPG +LY G      S  +  VV+ +ARI+ IR 
Sbjct: 193 GFPGVPRSLAASSGIFLGPDYHFELIRPGAALY-GIAPFEGSRVLNPVVSLDARIVQIRT 251

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AG+ V YG     T+ + IA   +GYADG+    +G    H  +V+ G         +
Sbjct: 252 VQAGDRVGYGLGWTATKPTRIATLGLGYADGFFRAQAG----HG-AVWYGQT------RL 300

Query: 308 PILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           P++G+++MD    D+TD+ + ++ GD + + GP   +D +A ++GT  Y++L  +G+R+ 
Sbjct: 301 PVIGRVSMDSISVDLTDAPAGLKAGDVLSVLGPAQDVDALARSAGTIGYEVLTALGSRFH 360

Query: 367 KFYT 370
           + Y 
Sbjct: 361 RVYV 364


>gi|218459378|ref|ZP_03499469.1| alanine racemase protein [Rhizobium etli Kim 5]
          Length = 255

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 120/250 (48%), Positives = 169/250 (67%), Gaps = 2/250 (0%)

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           +P AL VDTGFNRLGL + +A+    +          L++SHLAC DDP++ +N  QLE 
Sbjct: 2   YPCALHVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACGDDPTNAMNRQQLES 61

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           FR + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG      ++PM+ V TAEAR
Sbjct: 62  FRRVTAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGMANPMRPVATAEAR 121

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II +R   AGE VSYG   +L RDS +A+ + GYADGY  + S        +V  GG+GF
Sbjct: 122 IIQVRTVGAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQSSGGVPLRQAVPQGGQGF 181

Query: 302 IKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           I G+ VP+ G+ITMD+T+FD+TD    ++  GDY+++FG ++ LDDVA A+GT  Y++L 
Sbjct: 182 IAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKNMPLDDVARAAGTIGYEILT 241

Query: 360 RIGTRYAKFY 369
            +G R+ + Y
Sbjct: 242 SMGLRHERRY 251


>gi|83591749|ref|YP_425501.1| alanine racemase [Rhodospirillum rubrum ATCC 11170]
 gi|123527432|sp|Q2RXD1|ALR_RHORT RecName: Full=Alanine racemase
 gi|83574663|gb|ABC21214.1| alanine racemase [Rhodospirillum rubrum ATCC 11170]
          Length = 374

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 200/366 (54%), Gaps = 16/366 (4%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL A+ +NW ++   L   A  A VVK NAYGLG  K+ PAL  AG +DF V  ++E
Sbjct: 11  LTVDLDAIADNWLALRGRLRPGASCAGVVKANAYGLGARKVVPALLAAGCRDFVVAQIDE 70

Query: 68  GVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G+  L L    AR+FVL G   G E  + D+ LIPV++S  Q+  ++K  +  G   P A
Sbjct: 71  GLDILDLLPADARLFVLSGPPEGAEDEVLDSALIPVLNSPDQIDRWAKACARAGRKAPAA 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VDTG  RLGL+  E      +          L+++HLACAD+P   +N+ Q   F   
Sbjct: 131 LHVDTGMRRLGLTPLELDALLADPRPLAAFTPVLVMTHLACADEPDHPLNAEQRALFAAA 190

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            + + G+ ASLA++SGI LGP +HF L RPGI LYGG   +  ++PM+ VV  + +I+ +
Sbjct: 191 AARFPGLRASLANTSGIFLGPEWHFDLARPGIGLYGGNPTVGTANPMRQVVKLQGKILQV 250

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+      V YG        S IA   +GYADG+P +                 G + G 
Sbjct: 251 RRIDTPLSVGYGATHTAPAGSTIATVGVGYADGFPRSAGNR-----------AMGLLAGR 299

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VP++G+++MD+  FD++D        G  I + GPD+ +D +A  + T +Y++L R+G 
Sbjct: 300 SVPVVGRVSMDLLTFDVSDVPENLARPGAMIDLLGPDLSVDALADRADTVSYEILTRLGA 359

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 360 RYPRRY 365


>gi|83311194|ref|YP_421458.1| alanine racemase [Magnetospirillum magneticum AMB-1]
 gi|82946035|dbj|BAE50899.1| Alanine racemase [Magnetospirillum magneticum AMB-1]
          Length = 409

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 198/364 (54%), Gaps = 14/364 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ID+ A+  NW  ++AL   A  +AVVK + YGLG ++IAPAL+ AG + FFV  V EG
Sbjct: 49  LTIDVAAIVANWKRLSALVAPAEASAVVKADCYGLGMDRIAPALFAAGCRSFFVACVNEG 108

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQ 127
           + LR   P A I VL G   G E       LIPV++S+ Q+T ++     G   P  A+ 
Sbjct: 109 IALRRLLPGAMIHVLSGPMGGDEAEFAAHGLIPVLNSLSQMTGWASFAKKGSGAPAVAIH 168

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLGLS  E              +  L++SHLACADD  S +N+ QL   R L S
Sbjct: 169 IDTGMSRLGLSEPELERLAAKPEILAAMRPILVMSHLACADDSDSPMNARQLTTLRRLAS 228

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
           H   +  S+A+SSGI LG  +H  + RPG +LYG      + +PM  V+  E +I+ +R 
Sbjct: 229 HLPALPQSIAASSGIFLGRGFHLGMVRPGAALYGLNPMPGRPNPMSQVIKLEGKIVQVRD 288

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             + + V YG   ++     +A+ A+GYADG+  +LS             G G I G  V
Sbjct: 289 VDSPQTVGYGATHRVEGKRRLAIVAVGYADGWFRSLSNR-----------GHGMIGGVKV 337

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++MD+T FD+TD    S   G  IQ+ GP    D +A  + T  Y++L  +G R+
Sbjct: 338 PVVGRVSMDLTTFDVTDVPVESAHPGGLIQLIGPGYGPDHLAAEADTIGYEVLTALGRRH 397

Query: 366 AKFY 369
            + +
Sbjct: 398 LRRW 401


>gi|16125907|ref|NP_420471.1| alanine racemase [Caulobacter crescentus CB15]
 gi|221234670|ref|YP_002517106.1| alanine racemase [Caulobacter crescentus NA1000]
 gi|20137228|sp|Q9A7Q9|ALR_CAUCR RecName: Full=Alanine racemase
 gi|13423069|gb|AAK23639.1| alanine racemase [Caulobacter crescentus CB15]
 gi|220963842|gb|ACL95198.1| alanine racemase [Caulobacter crescentus NA1000]
          Length = 364

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 210/373 (56%), Gaps = 18/373 (4%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   +  R+ IDL AL +N+ ++ A +G+A  A  VK +AYGLG   +A  L+  G + F
Sbjct: 1   MTDAQDTRITIDLDALAHNYAALRARAGDAEVAPAVKADAYGLGAAPVADRLWAEGARSF 60

Query: 61  FVTSVEEGVKLR--LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           +V  + EGV LR  L   +A I+VL G  PG  + +    L+PV++S+PQ+  ++     
Sbjct: 61  YVARLAEGVALRRSLGDREATIYVLDGATPGSGEALEGAQLVPVLNSLPQVEAWNVQARS 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSV 177
           G     AL +DTG NRLGL  +E L     SF++ K   + L++SHLACAD P   +N+ 
Sbjct: 121 GRLR-AALHIDTGMNRLGLRPEE-LKVLVGSFDRLKRLDVELVVSHLACADTPEHPLNAT 178

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVV 236
           QL RF+   +   G+  SLA+S G+ LG  Y F  TRPG+SLYGG  +  + HP ++ V 
Sbjct: 179 QLARFQEAAALLPGVRRSLANSGGLFLGEAYRFDQTRPGVSLYGGGPE-GRPHPEIRAVA 237

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T EA I+ +R    GE + YG     + ++ +A+ A GYADG P            + F 
Sbjct: 238 TVEAPILQVRVVPRGESIGYGAGWTASDNTRVAIVAAGYADGVPR-----------AAFP 286

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
            G+ +  G   P+LG+++MD+   D+TD  +   G  +++FG ++ +DD A A+GT+ Y+
Sbjct: 287 RGEVWFDGARRPMLGRVSMDLIAVDVTDCDAARPGAMVELFGANLPVDDAADAAGTSAYE 346

Query: 357 LLVRIGTRYAKFY 369
            L R+  R  + Y
Sbjct: 347 RLTRLTLRGVRRY 359


>gi|330992271|ref|ZP_08316219.1| Alanine racemase [Gluconacetobacter sp. SXCC-1]
 gi|329760470|gb|EGG76966.1| Alanine racemase [Gluconacetobacter sp. SXCC-1]
          Length = 382

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 208/366 (56%), Gaps = 16/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I L A+  N+  + A +G A  AAVVK +AYGLG  ++AP L  AG + FFV  +EEG
Sbjct: 22  LEISLGAVAANYRLLRARTGQATCAAVVKADAYGLGAHQVAPVLEQAGAKVFFVAHLEEG 81

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH--PYA 125
           ++LR + +P A+IFVL+G  PG E+      L+PV++S+ Q+  + +  +    H  P A
Sbjct: 82  IRLRPHVSPTAQIFVLHGPMPGTERAFTHHALLPVLNSMEQIAGW-RAHASKAQHALPAA 140

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           LQVDTG +R GLS  +              +  L++SHLACAD P+S  N++Q +R R +
Sbjct: 141 LQVDTGMSRFGLSDADVTALADTPALLDGIETRLVMSHLACADTPASPANALQRDRLRAM 200

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +       +L++SSGI LGP+YHF L RPG +LYG     +  +P+Q  V  +ARI+  
Sbjct: 201 AARLPAAPLALSASSGIFLGPDYHFDLVRPGAALYGLAPNADAPNPLQPTVRLQARIVQR 260

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AG+ V YG     +    IA   IGYADG+     G  +        GG  ++  Y
Sbjct: 261 RTIKAGDGVGYGLTWHASGPRRIATLGIGYADGF--LRQGASN--------GGCAWLDSY 310

Query: 306 MVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            +PILG+I+MD T  D+T      ++   ++ + GP   +DDVA A+GT  Y++L  +G+
Sbjct: 311 RLPILGRISMDSTTVDVTGVPESVLDQATHVDMIGPRRSVDDVAHAAGTIGYEVLTALGS 370

Query: 364 RYAKFY 369
           R+ + Y
Sbjct: 371 RFHRVY 376


>gi|300023238|ref|YP_003755849.1| alanine racemase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525059|gb|ADJ23528.1| alanine racemase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 380

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 197/364 (54%), Gaps = 9/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + +DL  +  NW ++ A    A+ AAVVK +AYGLG E++  AL +AG   FF+ + EE 
Sbjct: 18  ITVDLAQIAANWRALAAKVAPAQCAAVVKADAYGLGAERVIAALSHAGCTTFFIATPEEA 77

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
              R   P+A IF L G+  G      +  + PV+S++  +  ++ L    G + P AL 
Sbjct: 78  ETARKLAPEAHIFALDGLVGGCATAFANQGVTPVLSTLDDIAAWAALARMRGETLPAALH 137

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL +++    T +       +L L++SHLA AD+P    N  QL  F TL +
Sbjct: 138 IDTGLNRLGLPVRDVRRLTADPSVLSGLRLELVMSHLASADNPRDPKNRDQLLAFETLTA 197

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+  SLA+S G++LGP YHF L RPG ++YGG        P++  V   ARI+ +  
Sbjct: 198 LFPGVPRSLAASDGLMLGPAYHFNLVRPGYAIYGGQASQLAPAPVKPAVRVAARILAVAD 257

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y    +  R S IA  A GYADG P   S  D         GG   I G++ 
Sbjct: 258 VAPGETVGYSATWRAKRPSRIATIAAGYADGVPRNSSAPDGRP------GGHVLIDGHLA 311

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++MD+   D+TD    +++  D+  + G  + ++D  +A+ T  Y++L R+G R+
Sbjct: 312 PLVGRVSMDLITVDVTDLPDGAVKPHDFATLIGEGLTIEDAGIAAATIGYEILTRLGPRF 371

Query: 366 AKFY 369
            + Y
Sbjct: 372 TRLY 375


>gi|332716082|ref|YP_004443548.1| Alanine racemase [Agrobacterium sp. H13-3]
 gi|325062767|gb|ADY66457.1| Alanine racemase [Agrobacterium sp. H13-3]
          Length = 388

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 208/365 (56%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++ A++  ++TAAVVK +AYGLG + ++  L++AG ++FFV  ++E 
Sbjct: 18  LTIDLGALRDNYLALAAMAPTSQTAAVVKADAYGLGADIVSQVLFDAGCRNFFVAHIDEA 77

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           + LRL  + +ARIFVL G+ PG E       + PV++S+ Q+  ++    + G + P A+
Sbjct: 78  LALRLRLSAEARIFVLNGLQPGNEASCAAMAVTPVLNSLEQIAQWAAHAKNLGKTLPAAV 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG  RLGLS +E               ++ ++SHLACAD+P    N+ QL   R   
Sbjct: 138 QIDTGMCRLGLSPEELEVLASRPQLLDDIDVAFVMSHLACADEPDHLSNAAQLSVMRKAA 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +  +    ++S GI LG +YH  L RPGI+LYGG   + + +PM+ VV  +  +I  R
Sbjct: 198 VAFPDVSVCFSNSGGIFLGNDYHNSLLRPGIALYGGAPSVTRPNPMKPVVRLDVAVIQTR 257

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG LV YGG  +    + +A  A GYADG P +LS             G  +  G  
Sbjct: 258 DVPAGSLVGYGGSFEAAGPTRLATIAAGYADGLPRSLSNR-----------GAAWYNGVR 306

Query: 307 VPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI G+++MD  + DI+     ++  G ++Q+ GPD  L+D+A  +GT  Y++L  +G R
Sbjct: 307 LPIAGRVSMDSIILDISALPLGTLTQGSFVQMIGPDQTLEDIAEDAGTIAYEILTGLGRR 366

Query: 365 YAKFY 369
           Y + Y
Sbjct: 367 YRRNY 371


>gi|163797505|ref|ZP_02191456.1| alanine racemase [alpha proteobacterium BAL199]
 gi|159177254|gb|EDP61813.1| alanine racemase [alpha proteobacterium BAL199]
          Length = 381

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 206/374 (55%), Gaps = 31/374 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL IDL A++ N+  +    G    A VVK + YGLG  ++APAL   G + FFV +++E
Sbjct: 14  RLTIDLGAVRRNYRRLVKELGGVPCAGVVKADGYGLGAARVAPALSAEGCRIFFVATLDE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126
            V+LR   P A +  L G+  G E +     ++PV++++ Q+T + +     G S P  L
Sbjct: 74  AVRLRPVLPDATVCCLNGLLAGTEDVFVAHRIVPVLNALDQITRWQTHGGRLGRSLPAIL 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLG--------QLSLIISHLACADDPSSHVNSVQ 178
            VDTG NRLGL   E        +++ LG            +ISHLA AD+P +  N++Q
Sbjct: 134 HVDTGMNRLGLGDDE--------WDRVLGTPGVLDGVDWQYLISHLAVADEPDNPANALQ 185

Query: 179 LERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           L RF+ +      G++ASLA+SSGI LG  YHF L RPG++LYGG       +P++  + 
Sbjct: 186 LARFQRVRQRMPNGMKASLANSSGIFLGTPYHFDLGRPGVALYGGRPSSIGPNPLECPIR 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E R++ +R   AG+ V YG      R S IA  A GYADGY  +LSG     + +V LG
Sbjct: 246 LEGRVLQVRDVPAGDSVGYGNSWTAGRRSRIATVAAGYADGYLRSLSG-----AGTVALG 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNY 355
            +        P++G+++MD+   D+TD    E+  G ++++ GP I  D  A A+GT  Y
Sbjct: 301 AR------TCPVVGRVSMDLITVDVTDVPPAEIAPGTFVEVLGPTITPDAAADAAGTIGY 354

Query: 356 DLLVRIGTRYAKFY 369
           +LL  +G RY + Y
Sbjct: 355 ELLTALGRRYVRHY 368


>gi|299133317|ref|ZP_07026512.1| alanine racemase [Afipia sp. 1NLS2]
 gi|298593454|gb|EFI53654.1| alanine racemase [Afipia sp. 1NLS2]
          Length = 383

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 206/377 (54%), Gaps = 19/377 (5%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M  N   R   L +DL A+++N+  + + L  +   A VVK + YGLG   ++ AL+  G
Sbjct: 1   MEKNGRFRGGTLAVDLRAVRSNYRLLRSRLRASTLCAGVVKADGYGLGATYVSRALFAEG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
            + FFV  ++EG+ LR Y P+ A IF+L G+  G E+      L+PV++S  Q   ++  
Sbjct: 61  CRHFFVAHLDEGLALRPYLPRSAAIFILNGLPRGAERECAAAGLVPVLNSPEQAGAWAGC 120

Query: 116 MSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
               G   P  LQVD+G NRLGL+  EA  F        +  L  I+SHLACAD P+   
Sbjct: 121 ARTRGQRLPAVLQVDSGMNRLGLTAGEAARFAETPARSGVVDLRYIMSHLACADTPAHEA 180

Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           N++QL  FR L   +  +  SLA+SSGI LGP+YHF L RPG +LYG       ++PMQ+
Sbjct: 181 NAMQLATFRQLAGLFPDVPRSLANSSGIFLGPDYHFSLVRPGSALYGVNPDPAATNPMQS 240

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           VV   A++I +R  + G+ V YG   +   ++ +A  ++GYADG+               
Sbjct: 241 VVRLTAKVIQLRNVMPGDCVGYGWDARARGEARLATLSLGYADGFHRAWG---------- 290

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG--DYIQIFGPDIKLDDVALASGT 352
             GG  F +G  +P++G+++MD  + D +      +G    +++ G D  LDD+A  +GT
Sbjct: 291 -KGGAVFFEGLRLPVVGRVSMDSIVIDASAIAPGRLGPDSEVEVIGDDQPLDDLASVAGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +G+RY + Y
Sbjct: 350 IGYEVLTGLGSRYQRIY 366


>gi|304392032|ref|ZP_07373974.1| alanine racemase [Ahrensia sp. R2A130]
 gi|303296261|gb|EFL90619.1| alanine racemase [Ahrensia sp. R2A130]
          Length = 378

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 195/365 (53%), Gaps = 8/365 (2%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+ IDL ALK N+  +  L+  A   AVVK N YG G E + PAL++AG + FFV    E
Sbjct: 12  RVTIDLDALKANYTHLAKLAAPAECGAVVKANGYGCGIEVVVPALWDAGCRTFFVAVSSE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           G+++    P AR F+L G+  G E  + D  LIP + SV Q+  ++      G   P A+
Sbjct: 72  GLRVMKTAPDARCFILNGLFTGAENALADAGLIPCLGSVTQIENWAATAKQRGTPLPCAI 131

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            +D+G NRLGLS  E               + L ++H ACADD        Q ERF    
Sbjct: 132 HMDSGMNRLGLSYDELARTVEQPHLMDHLDVQLFMTHYACADDIGHPQTEAQRERFLQGA 191

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
               G+  S A+S+  L   ++ F L RPGI+LYGG    +  +PM+ VVT E R++  R
Sbjct: 192 DLLPGVPRSAANSAADLQATDHTFDLARPGIALYGGEALNDVDNPMRPVVTLEGRVVQTR 251

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI--KG 304
               G  V YG  + +TR + +A  + GYADGY    S       P  F+        KG
Sbjct: 252 WVERGGAVGYGASETMTRRTRLAYVSTGYADGYHRAASNFG---VPMRFVAPAAVTHYKG 308

Query: 305 YMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           + +  +G+I+MD+  FD+TD    +I  GD+I++FG ++ +DDVA A+GT  Y+LL  +G
Sbjct: 309 HTLKGVGRISMDLAAFDVTDMPDDAIGEGDWIELFGNNVPVDDVARAAGTIGYELLTGLG 368

Query: 363 TRYAK 367
            RYA+
Sbjct: 369 ARYAR 373


>gi|254501958|ref|ZP_05114109.1| alanine racemase [Labrenzia alexandrii DFL-11]
 gi|222438029|gb|EEE44708.1| alanine racemase [Labrenzia alexandrii DFL-11]
          Length = 380

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 202/374 (54%), Gaps = 26/374 (6%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL +DL A+  NW  + + L+  +  AA +K NAYG G  + A  L+  G + FFV    
Sbjct: 17  RLTVDLDAIAANWSLLRSRLAPGSECAATIKANAYGTGQAETAKRLFEEGCRTFFVAVPT 76

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E + LR   P A I+ L G+ P    ++   ++ PV+ S+ +L  ++ L  +   S P A
Sbjct: 77  EAMALRQTLPSATIYALDGLFPDTADLLLQHDVRPVLGSLDELKEWAALCRTARKSFPAA 136

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL--------SLIISHLACADDPSSHVNSV 177
           + VDTG +RLGLS  E        F   L  L        SL +SHLAC  DP   +N  
Sbjct: 137 VHVDTGIHRLGLSGDE--------FGTALADLELMGPFKPSLFMSHLACGSDPDHPMNQE 188

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           QL RF  L S +KG+  SLA+S+G+L+GP+YHF L RPGISLYGG    +  +PMQ V  
Sbjct: 189 QLARFTELTSPFKGVPRSLANSAGVLMGPDYHFDLVRPGISLYGGRAFDHGDNPMQPVAK 248

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            EARI+++R    G+ + YG  +   R    AV A GYADG  L      S+  P    G
Sbjct: 249 VEARIMIVRNVPKGDAIGYGATQTAKRALRNAVVAAGYADG--LLRRASSSDDRP----G 302

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G G I G+   ILG+I+MDM   D+TD     ++ G  +++ GP++   D+A  + T +Y
Sbjct: 303 GFGMIGGHKASILGRISMDMITLDVTDIPEHLVQRGGLVEMLGPNVAAADMAAYAETIDY 362

Query: 356 DLLVRIGTRYAKFY 369
           + L  +G R+ + Y
Sbjct: 363 EYLTSLGRRFERIY 376


>gi|162148204|ref|YP_001602665.1| alanine racemase, catabolic [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209542849|ref|YP_002275078.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786781|emb|CAP56364.1| putative alanine racemase, catabolic [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530526|gb|ACI50463.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 383

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 200/372 (53%), Gaps = 15/372 (4%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           H+     L IDL A++ N+ ++  L+  A  AAVVK +AYGLG  ++APAL   G + FF
Sbjct: 13  HARAGATLTIDLDAIRANYRTVRNLAAGAECAAVVKADAYGLGAARVAPALQEEGARTFF 72

Query: 62  VTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119
           V  ++EG+ LR + +  ARI VL+G  PG EK     +LIPV++SV Q+  +  L    G
Sbjct: 73  VAHLDEGMALRRHVSADARIIVLHGAVPGAEKDCLHDDLIPVLNSVDQIQRWRGLAHEAG 132

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            + P  LQ+DTG +R GLS  E      +    +   L L+ISHLACADDP    ++ Q 
Sbjct: 133 RALPSILQLDTGMSRFGLSENEIRAIVADPDGLRGIDLRLVISHLACADDPDDPASTRQR 192

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            R   + +       SLA+SSG+ LG ++HF L RPG +LYG        +PM+ VV  +
Sbjct: 193 ARLVRMRALLPPAPVSLAASSGVFLGRDFHFDLVRPGAALYGVAPNAATPNPMRPVVRLQ 252

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARI+  R     + V YG   + +    IA  A GYADG+    SG            G 
Sbjct: 253 ARILQTRHVSPNDGVGYGLTYRPSAMRRIATIATGYADGF--MRSGAAR---------GC 301

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
            ++    +P+LG+I+MD    D+TD+       G  + + GP   +DDVA A+GT  Y++
Sbjct: 302 AWLGDMQLPVLGRISMDSMTVDVTDAPETLTRPGTMVDLLGPRRGVDDVARAAGTIGYEI 361

Query: 358 LVRIGTRYAKFY 369
           L  +G RY + Y
Sbjct: 362 LTSLGHRYHRAY 373


>gi|222107011|ref|YP_002547802.1| alanine racemase [Agrobacterium vitis S4]
 gi|221738190|gb|ACM39086.1| alanine racemase [Agrobacterium vitis S4]
          Length = 374

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 137/374 (36%), Positives = 204/374 (54%), Gaps = 16/374 (4%)

Query: 1   MHSNEF-LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+++ F  RL IDL AL +N+  + A +  A T+AVVK +AYGLG  ++ PALY AG + 
Sbjct: 9   MNADAFSARLVIDLDALADNYRQLAAETTPAETSAVVKADAYGLGAARVGPALYRAGCRK 68

Query: 60  FFVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117
           FFV +V+E   LR + P  A +F+L G+ PG E        IPV++S+ QL  +SK+ S 
Sbjct: 69  FFVANVQEAAGLRQHLPGDAELFILNGLQPGAEPFAAANGFIPVLNSLEQLANWSKMASE 128

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G + P  LQ DTG +RLG S +EA     +        +  I+SHLA ADD +S  N+ 
Sbjct: 129 FGRTLPAILQFDTGMSRLGFSPEEANVLAGDPALLSGLSIRYIMSHLASADDSASTQNAA 188

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           Q    R  ++ + GI    ++S GI +   +H  L RPG++LYG          M+ VV 
Sbjct: 189 QFSVMRERLAQFPGIALCFSNSGGIFIDKQFHGALVRPGVALYGAVPSDLAGRRMKPVVR 248

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +A++I  R   AG  V YG     T+++ +A  AIGYADG P  LS             
Sbjct: 249 VDAKVIQTRTVPAGACVGYGATYVATKETRLATIAIGYADGLPRCLSDR----------- 297

Query: 298 GKGFIKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G  +     +PI+G+++MD    DI+     ++ +G  +++ GP   L+DVA A+GT  Y
Sbjct: 298 GAAYYGDIRLPIVGRVSMDSMTLDISALPPGTLTLGSLVEMIGPHQSLEDVAQAAGTIAY 357

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +G RY + Y
Sbjct: 358 EILTSLGHRYHRDY 371


>gi|114704797|ref|ZP_01437705.1| alanine racemase [Fulvimarina pelagi HTCC2506]
 gi|114539582|gb|EAU42702.1| alanine racemase [Fulvimarina pelagi HTCC2506]
          Length = 396

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 217/375 (57%), Gaps = 22/375 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++ID  ALK NW ++ ++  NA+T A VK + YGLG  +++ AL+ AG ++FFV   EE
Sbjct: 29  RVEIDRGALKRNWAALASIHPNAQTGAAVKADGYGLGAVEVSRALFEAGCRNFFVAWPEE 88

Query: 68  GVKLR-LYTPQ---ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           G  +R    P+   AR+FVL G+ P   + + D +L+PV+SS   LT +++ L +     
Sbjct: 89  GQIVRSALAPKNKNARVFVLQGMEPAAVRFLTDHDLVPVLSSPDDLTIWTEGLTALARRA 148

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P ALQ++TG NRLGL  +  L            +++L+++HLA AD  S   +  Q  RF
Sbjct: 149 PAALQLETGMNRLGLD-ERGLGKAMALVEAGELEVALLLTHLASADV-SPEDSEAQRIRF 206

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
             + + +  I  SLA+S+G++ G ++   LTRPGI+LYGG   +      + V    A +
Sbjct: 207 SAMSARFPYISRSLANSAGLVCGESFGLDLTRPGIALYGGMGCLGGLIATEPVARLSAAV 266

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG------LDSEHSPSVFL 296
           I +R+  AGE V Y G  +LTR ++IA   IGY DGY   LSG      +D   + +V  
Sbjct: 267 IQVREVEAGEKVGYAGAARLTRRTIIATLGIGYGDGYLRALSGAGVPLRMDRPAASAV-- 324

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
                I G  VP+LG+I+MD+T+ D+TD  + S+  GD  ++FGP++ +D VA A+GT  
Sbjct: 325 -----ISGCAVPVLGRISMDLTLLDVTDLPAGSVRPGDRAELFGPNMPIDKVAEAAGTIP 379

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LL  +G R  + +
Sbjct: 380 YELLTGLGPRVQRVW 394


>gi|190894994|ref|YP_001985287.1| alanine racemase [Rhizobium etli CIAT 652]
 gi|190700655|gb|ACE94737.1| alanine racemase protein [Rhizobium etli CIAT 652]
          Length = 377

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 200/368 (54%), Gaps = 19/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E 
Sbjct: 23  LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS---KLMSCGVSHPY 124
           V+LR      A+IFVL G+ PG E    ++ +IPV++S+ Q   +S   +L++   S P 
Sbjct: 83  VRLRPALAEDAQIFVLNGLQPGNEVACAESGIIPVLNSLAQWRQWSATARLLT--RSLPA 140

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            LQ DTG +RLG   +E  +      +    ++  I+SHLACAD+  S  N  QL     
Sbjct: 141 VLQFDTGMSRLGFPWEERAELAAVIGDGANVEILFIMSHLACADELDSGQNGDQLAEMAR 200

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           +   + G + S A+S G+ LG  YH  L RPGI+LYGG      ++PM+ VV  +  ++ 
Sbjct: 201 IADEFPGFDISFANSGGVFLGDAYHGVLARPGIALYGGAPNAGGTNPMEPVVRLDVAVVQ 260

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R   +G  + YGG     R++ +A  A GYADG P +L              G  + KG
Sbjct: 261 TRTVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDC-----------GAVYHKG 309

Query: 305 YMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
             +PI+G+++MD    DIT     ++ +G  +++ GP+  L+DVA A+GT +Y++L  +G
Sbjct: 310 IRLPIVGRVSMDSATVDITALPEGALRLGSLVEVLGPNQTLEDVAGAAGTISYEILTGLG 369

Query: 363 TRYAKFYT 370
            RY + Y 
Sbjct: 370 DRYDRQYC 377


>gi|327193285|gb|EGE60191.1| alanine racemase protein [Rhizobium etli CNPAF512]
          Length = 377

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 200/368 (54%), Gaps = 19/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E 
Sbjct: 23  LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS---KLMSCGVSHPY 124
           V+LR      A+IFVL G+ PG E    ++ +IPV++S+ Q   +S   +L++   S P 
Sbjct: 83  VRLRPALAEDAQIFVLNGLQPGNEVACAESGIIPVLNSLAQWRQWSATARLLT--RSLPA 140

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            LQ DTG +RLG   +E  +      +    ++  I+SHLACAD+  S  N  QL     
Sbjct: 141 VLQFDTGMSRLGFPWEERAELAAVIGDGANVEILFIMSHLACADELDSGQNGDQLAEMAR 200

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           +   + G + S A+S G+ LG  YH  L RPGI+LYGG      ++PM+ VV  +  ++ 
Sbjct: 201 IADEFPGFDISFANSGGLFLGDAYHGVLARPGIALYGGAPNAGGTNPMEPVVRLDVAVVQ 260

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R   +G  + YGG     R++ +A  A GYADG P +L              G  + KG
Sbjct: 261 TRTVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDC-----------GAVYHKG 309

Query: 305 YMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
             +PI+G+++MD    DIT     ++ +G  +++ GP+  L+DVA A+GT +Y++L  +G
Sbjct: 310 IRLPIVGRVSMDSATVDITALPEGALRLGSLVEVLGPNQTLEDVAGAAGTISYEILTGLG 369

Query: 363 TRYAKFYT 370
            RY + Y 
Sbjct: 370 DRYDRQYC 377


>gi|15891641|ref|NP_357313.1| alanine racemase [Agrobacterium tumefaciens str. C58]
 gi|20137303|sp|P58737|ALR2_AGRT5 RecName: Full=Alanine racemase, catabolic
 gi|15160087|gb|AAK90098.1| alanine racemase [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 203/365 (55%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++  ++  ++TAAVVK +AYGLG + ++  L+ AG ++FFV  ++E 
Sbjct: 18  LTIDLGALRDNYLTLAGMAPASQTAAVVKADAYGLGADVVSQTLFEAGCRNFFVAHIDEA 77

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           + LRL  + +ARIFVL G+ PG E       + PV++S+ Q+  +S      G +   A+
Sbjct: 78  LALRLRLSAKARIFVLNGLQPGNETSCAAMAITPVLNSLEQIAQWSAHARELGKTLTAAV 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG  RLGLS +E    +         +++ ++SHLACAD+P    N+ QL   R   
Sbjct: 138 QIDTGMCRLGLSPEELEILSAKQQLLDGIEIAFVMSHLACADEPDHVSNAAQLAVMRKAA 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + +       ++S GI LG +YH  L RPGI+LYGG       +PM+ VV  +  +I  R
Sbjct: 198 TAFPETPVCFSNSGGIFLGNDYHNALLRPGIALYGGAPSAAGPNPMKPVVRLDVAVIQTR 257

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG LV YGG    +  + +A  A GYADG P +LS             G  +  G  
Sbjct: 258 TVPAGSLVGYGGSFTASVPTRLATIAAGYADGLPRSLSNR-----------GAAWYNGVR 306

Query: 307 VPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI G+++MD  + DI+     ++  G  +Q+ GPD  L+D+A  +GT  Y++L  +G R
Sbjct: 307 LPIAGRVSMDSIILDISALPEGTLTQGSLVQMIGPDQTLEDIAEDAGTIAYEILTGLGRR 366

Query: 365 YAKFY 369
           Y + Y
Sbjct: 367 YRRSY 371


>gi|296445363|ref|ZP_06887321.1| alanine racemase [Methylosinus trichosporium OB3b]
 gi|296257124|gb|EFH04193.1| alanine racemase [Methylosinus trichosporium OB3b]
          Length = 380

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 193/364 (53%), Gaps = 12/364 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL  NW  + A +  A  AAVVK +AYG+G E    AL  AG + FFV +  EG
Sbjct: 23  LCVDLAALVANWRLLAARAPGADCAAVVKADAYGIGLEPATRALAAAGCRTFFVATAGEG 82

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
            +LR   P+A ++VL G+  G    +    L PV++S+ ++  +     S G   P ALQ
Sbjct: 83  ERLRAVAPRAIVYVLEGLPQGGAFTLAAARLRPVLASLEEIGEWGAFGRSIGRRLPAALQ 142

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGLS +EA      + +    +L+L++SH  CA  P    N+ Q+  F   + 
Sbjct: 143 LDTGMNRLGLSPREAPAAAAAAQDI---ELTLVMSHFICAQWPDDPRNARQIAAFEAALG 199

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G  ASL +SSG+ L    H  L RPG +LYGG       +PM+ VV  EA ++ +R+
Sbjct: 200 CFPGAPASLCNSSGVFLSEKPHHDLLRPGYALYGGNPTPLCPNPMRPVVRLEASVLAVRE 259

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AGE V Y G     R + +A   +GY DG P   S      S     G +  I GY  
Sbjct: 260 IAAGETVGYDGVWTAARPTRLATLGLGYGDGLPAGAS------SGPGRAGAEAVIGGYRC 313

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++MD  M D+TD     +  G   +I G  I +D++A  SGT  Y++L R+G RY
Sbjct: 314 PLVGRVSMDFVMLDVTDIPEAIVHRGASAEILGETIGVDELAARSGTIGYEILTRLGRRY 373

Query: 366 AKFY 369
            + Y
Sbjct: 374 ERRY 377


>gi|27379181|ref|NP_770710.1| alanine racemase [Bradyrhizobium japonicum USDA 110]
 gi|27352332|dbj|BAC49335.1| alanine racemase [Bradyrhizobium japonicum USDA 110]
          Length = 423

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 194/364 (53%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  AAV+K +AYG G  ++A AL+ AG + FFV ++EE 
Sbjct: 33  LTVDLDAIIANWRKLEKTAVPAECAAVIKADAYGCGAAQVARALHKAGCKTFFVATIEEA 92

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
            K+R   P+  I+VL G      +     N  PVI  + +L  +       G +   A+ 
Sbjct: 93  RKVRAAVPEPTIYVLGGYFQNTGEHYAQINCRPVIGDLNELAEWDVFCRRTGWNGGAAVH 152

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL+L EA        N     ++L++SHL  A+  +S VN+ QL  FR + S
Sbjct: 153 IDTGMNRLGLTLAEAQAIIPR-INAGDHGITLVMSHLVSAEQLNSPVNAKQLASFRGIAS 211

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ A+LA+SSGI LG  + F L RPG +LYG        +PMQ VV  +ARI+ IR 
Sbjct: 212 EFSGVPAALANSSGIFLGAPFQFDLVRPGAALYGVNPTPEADNPMQPVVDLKARIVQIRN 271

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YGG     R + +A+ A+GYADGY    S  D      V + GK        
Sbjct: 272 VERGESVGYGGTWTARRPTKLAIIAVGYADGYFRAASSNDGTRGAEVIVAGK------RC 325

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P+ G+++MD+   DITD    +   G  + + G  I +D++A   GT  Y++L  +G RY
Sbjct: 326 PVAGRVSMDLIAIDITDLPPNAARRGHLVTLIGEGITVDELAHHFGTIGYEVLTSLGHRY 385

Query: 366 AKFY 369
           A+ Y
Sbjct: 386 ARVY 389


>gi|110632757|ref|YP_672965.1| alanine racemase [Mesorhizobium sp. BNC1]
 gi|110283741|gb|ABG61800.1| alanine racemase [Chelativorans sp. BNC1]
          Length = 385

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/364 (34%), Positives = 196/364 (53%), Gaps = 16/364 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  AAVVK +AYGLG  ++A AL +AG + FFV  +EEG
Sbjct: 11  LTVDLEAVTANWLLLAGRAAGAECAAVVKADAYGLGAAEVATALQDAGCRTFFVAHLEEG 70

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           + LR      +RIFVL G  P  ++      L PV+ ++ +L  + K  +      P AL
Sbjct: 71  LSLRRTLGSGSRIFVLNGTPPDTQEEFGQAALTPVVGTINELQAWRKHAATKRGPIPVAL 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG +RLGLS  +      ++   +   + L++SHLACAD+P    N  Q  RF+ L 
Sbjct: 131 QLDTGMSRLGLSPSDVSGIAADTTLLRGIHIELVMSHLACADEPGHSANESQRSRFQRLR 190

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                  AS+A+SSG  LG  +HF + RPG +LYG      + +PM  VV   AR++ +R
Sbjct: 191 RMLPQAPASIANSSGTFLGKGFHFSMIRPGAALYGINPTPYQPNPMCQVVKVAARVLQVR 250

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +A AG  + YG   +  R S++A  A+GYADG+P   S             G  + +G  
Sbjct: 251 QARAGTGIGYGHAARARRLSMLATIALGYADGWPCQAS-------------GAAYYRGQR 297

Query: 307 VPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +P +G+++MD  + D+T  S     GD ++   P   +D++   +G+  Y++L R+G R+
Sbjct: 298 LPFIGRVSMDSIILDVTGCSNPPREGDLVEFICPSQTVDEIGRLAGSIGYEVLTRLGRRF 357

Query: 366 AKFY 369
            + Y
Sbjct: 358 HRRY 361


>gi|299133691|ref|ZP_07026885.1| alanine racemase [Afipia sp. 1NLS2]
 gi|298591527|gb|EFI51728.1| alanine racemase [Afipia sp. 1NLS2]
          Length = 396

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 194/364 (53%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW ++ + +  A  +AVVK +AYG G   +   L + G + FFV +++E 
Sbjct: 23  LTIDLDALATNWKALESRAVPAECSAVVKADAYGCGLTPVTRKLVSIGCKTFFVATLDEA 82

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
            + R   P+A I+VL G            +  PVI  + +L  +       G +   ALQ
Sbjct: 83  KRAREAAPKAAIYVLDGFFANCGDDFAKIDCRPVIGDLNELAEWDAFRRTRGWTGLAALQ 142

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG +  EA            G ++L++SHLACA+D S+ +N+ QL  FR++ S
Sbjct: 143 IDTGMNRLGFTPDEARGLVPRIKQADHG-IALVMSHLACAEDMSNAMNARQLAAFRSVAS 201

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + GI ASLA+SSGI LG ++H  + RPG +LYG        +PMQ VV  + RI  IR 
Sbjct: 202 EFSGITASLANSSGIFLGSHFHMDMVRPGAALYGVNPTPEADNPMQPVVGLKVRIAQIRN 261

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R + +A+ + GYADGY    SG++   S       +  + G   
Sbjct: 262 VPKGETVGYGALWHAKRPTRLAIVSAGYADGYFRAASGIEGTRS------AQAIVAGQRC 315

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI+G+I+MD+   DITD     I  G +I + G  + LD++    GT  Y++L  +G RY
Sbjct: 316 PIVGRISMDLMAIDITDVPHGGIRRGHFITLIGEGLTLDELGHHFGTIGYEVLTSLGRRY 375

Query: 366 AKFY 369
           A+ Y
Sbjct: 376 ARDY 379


>gi|188583600|ref|YP_001927045.1| alanine racemase [Methylobacterium populi BJ001]
 gi|179347098|gb|ACB82510.1| alanine racemase [Methylobacterium populi BJ001]
          Length = 363

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 195/362 (53%), Gaps = 14/362 (3%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL +DL A+  NW ++ A +  A   AVVK +AYG G   +APAL+ AG + FFV  + E
Sbjct: 14  RLTVDLAAIAANWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+  R   P+A I+VL G+ PG  +      L PV+    +L  ++       + P AL 
Sbjct: 74  GIAARKILPEAAIYVLNGLVPGHAEAFRAHGLRPVLGDRGELLEWAAATD--GAAPAALH 131

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NRLGL ++EAL    +    + G + L++SHL  A+ P   +N+ Q E F  +  
Sbjct: 132 VDTGMNRLGLRVEEALALAGDPLIARAG-IDLVMSHLVSAERPDDPLNAGQAEAFARVRD 190

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            +  + ASLA+SSG  L       L RPG +L+GG  +  + +PM+ VV  EA I+ +R 
Sbjct: 191 AFPPLRASLANSSGTCLAARARHDLLRPGYALFGGNPEPGQRNPMRPVVRLEATILQLRA 250

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AGE   Y G+ +      +A  ++GYADGYP + S  +S H+          + G   
Sbjct: 251 VEAGESCGYNGRWQAPAPRRLATLSLGYADGYPRSAS--NSGHA---------LVGGVPC 299

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI+G I+MD+ + D+TD+     G    + G  + +D V  A+GT  Y++L  +G+RY +
Sbjct: 300 PIVGLISMDLIILDVTDASEARRGATATLIGDSLDIDTVGQAAGTIGYEILTGLGSRYVR 359

Query: 368 FY 369
            Y
Sbjct: 360 SY 361


>gi|323138212|ref|ZP_08073284.1| alanine racemase [Methylocystis sp. ATCC 49242]
 gi|322396464|gb|EFX98993.1| alanine racemase [Methylocystis sp. ATCC 49242]
          Length = 382

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 199/364 (54%), Gaps = 12/364 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL+AL +NW +++ L G A   AVVK + YG+G   +  AL  AG + FFV +V EG
Sbjct: 25  LTVDLSALVSNWRALSTLGGQAECGAVVKADGYGVGQIPVMRALLAAGCRTFFVATVVEG 84

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
              R   P+A I+VL G+ PG    +    L P I S  +L  ++    + G     A+ 
Sbjct: 85  ETARALAPEATIYVLDGVAPGCALRLAAARLRPAIGSFAELEEWAAAGRTLGRKLEAAIH 144

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG NRLG S  +A D    +   K    ++++SHL+ +  P + VN+ Q+  F     
Sbjct: 145 FDTGMNRLGFSPADAADVAERA---KAIAPTVVMSHLSTSQIPEAPVNARQIAAFEETRR 201

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
           H+ G+ AS+A+SS + L    HF+LTRPG +LYGG      ++PM+ VV+  ARII +R 
Sbjct: 202 HFPGLAASMANSSAVFLPEKPHFELTRPGYALYGGNPTPGAANPMRAVVSLHARIIAMRD 261

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V Y G     R S +A    GYADG P++ +    + +      G+  + G   
Sbjct: 262 LAPGDCVGYDGIWTAARPSRVATIGAGYADGLPVSATAAPKKPA------GEAIVGGVRC 315

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P +G+++MD  + D+TD+   + + G ++++ G  I ++++A  + T  Y++L R+G RY
Sbjct: 316 PFIGRVSMDYIVLDVTDAPREAAQRGAWVELLGETIDVEELAGRARTIGYEVLTRLGRRY 375

Query: 366 AKFY 369
           A+ Y
Sbjct: 376 ARRY 379


>gi|114328882|ref|YP_746039.1| alanine racemase [Granulibacter bethesdensis CGDNIH1]
 gi|114317056|gb|ABI63116.1| alanine racemase [Granulibacter bethesdensis CGDNIH1]
          Length = 360

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 191/364 (52%), Gaps = 13/364 (3%)

Query: 8   RLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+IDL A+  NW  +    G  R T AVVK + YGLG   IA  L   G    FV   +
Sbjct: 3   RLEIDLEAIAANWRFLRTTHGTNRITGAVVKADGYGLGAAVIAQRLVQEGCDHIFVAHPQ 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYA 125
           E + LR   P A + VL G+ PG E    D  LIP + S+ ++  + +  +      P  
Sbjct: 63  EALTLRPLIPSATLIVLNGLWPGWEAAYTDHGLIPALGSLAEIEAWRQEATRREQALPAF 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VDTG NRLGL  QE               L  I++HL  A+ P    N++Q +RF   
Sbjct: 123 LHVDTGINRLGLDPQERDRLAERPELLDGITLRAIMTHLISAEIPDHDSNTLQRQRFAAA 182

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            S       S+A+SSGI LGP++   + RPG +LYG      + +PM+ V+   AR++ I
Sbjct: 183 CSRLPPAPRSIANSSGIFLGPDFASDIARPGAALYGINPVPGRPNPMRPVLRLSARVLQI 242

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE+V Y G     R S IAV ++GYADG+   L    S  + + F G +      
Sbjct: 243 RPVEAGEIVGYNGIWVAQRPSRIAVCSVGYADGFQRAL----SSRAEAAFDGAR------ 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            +P++G+++MD+T +D+TD   I VG ++++ GP++  D+VA  + T  Y++L  +G RY
Sbjct: 293 -IPLVGRVSMDLTTYDVTDDPRITVGSWLELIGPEVSPDEVAARASTNGYEVLTSLGRRY 351

Query: 366 AKFY 369
            + Y
Sbjct: 352 ERVY 355


>gi|254437149|ref|ZP_05050643.1| alanine racemase [Octadecabacter antarcticus 307]
 gi|198252595|gb|EDY76909.1| alanine racemase [Octadecabacter antarcticus 307]
          Length = 345

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 196/363 (53%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL +NW S++A++ +  T AVVK N YGLG  K+  AL  AGV+ FFV   +EG
Sbjct: 6   LSVDLDALSSNWRSLDAMT-DVETCAVVKANGYGLGVAKVGRALMKAGVKRFFVAVAQEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR    P   I +  G   G   +I D  L P+I++V QLT + + +     HP+ +Q
Sbjct: 65  VTLRQALGPNVEICIFAGHMRGDTDMIADMMLTPIINTVGQLTRHLEALP---EHPFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL + E       + ++      L++SHLACAD P   +N  QL++F  L++
Sbjct: 122 IDTGMNRLGLEIDEWASVAEIALSQNC---RLVMSHLACADTPDHPMNRQQLDQFH-LMT 177

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GILLGP YHF +TRPGI LYGG      + P   V   +  +I +R 
Sbjct: 178 DGINVPRSLAATGGILLGPEYHFDMTRPGIGLYGGA-PFTDALP---VAYLDLPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y       R S IA  + GYADG    LS            G   +     V
Sbjct: 234 VNVGETVGYANAWTAQRQSKIATVSGGYADGLTRALSA-----------GANLWHGAQAV 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+++MD+   D+TD    E+   + I GPD  +D +A  +GT  Y++L  +G+RY +
Sbjct: 283 PLVGRVSMDLITADVTD--LPELPGVLSILGPDQTVDQLAERAGTIGYEILTSLGSRYQR 340

Query: 368 FYT 370
            Y+
Sbjct: 341 RYS 343


>gi|86748627|ref|YP_485123.1| alanine racemase [Rhodopseudomonas palustris HaA2]
 gi|86571655|gb|ABD06212.1| alanine racemase [Rhodopseudomonas palustris HaA2]
          Length = 388

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 202/373 (54%), Gaps = 18/373 (4%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           H +    L IDL A++ N+  +  + G   R   VVK +AYGLG  ++APALY AG +DF
Sbjct: 5   HRHAGATLTIDLAAIRWNYRRLAEMVGPKVRCGGVVKADAYGLGARQVAPALYGAGCRDF 64

Query: 61  FVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118
           +V  ++E + LR +  P A I VL G+  G E    D  ++PV++S+ QL  +S      
Sbjct: 65  YVAHLDEALDLRPHLPPDASIVVLNGLPRGGEDDCADAGIVPVLNSLAQLDDWSACARKA 124

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G      +Q+D+G +RLGLS +E  + +H         + L++SHLACAD      N+ Q
Sbjct: 125 GRVLGAIVQIDSGMSRLGLSPRELDELSHARLRGI--DIRLVMSHLACADVADHAANAYQ 182

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
             RF  L   + GI  SLA+SSGI LGP++H+   RPG +LYG     ++ +PM+ VV  
Sbjct: 183 RARFCALADRFGGIPKSLANSSGIFLGPDFHYDAARPGAALYGINPTSSRPNPMRPVVRL 242

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A I+  R+  AG+ V YG   ++ R S +A  +IGYADG    L              G
Sbjct: 243 AAAIVQTREIEAGDHVGYGWDFRVERPSRLATLSIGYADGLHRALG-----------RAG 291

Query: 299 KGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
             + +G  + I G+++MD    D+ D  +  +  G  I++ GP   +D++A ASGT  Y+
Sbjct: 292 AVYFEGRALAIAGRVSMDSITVDLGDLPAERLGRGAEIELIGPHQSVDELASASGTIGYE 351

Query: 357 LLVRIGTRYAKFY 369
           +L  +G R+ + Y
Sbjct: 352 ILTSLGDRFRRIY 364


>gi|126728695|ref|ZP_01744510.1| alanine racemase [Sagittula stellata E-37]
 gi|126710625|gb|EBA09676.1| alanine racemase [Sagittula stellata E-37]
          Length = 345

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 203/368 (55%), Gaps = 34/368 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL IDL AL+ NW ++ ALS    T AVVK +AYGLG EK AP L  AG + FFV   EE
Sbjct: 5   RLTIDLGALRANWTALAALS-EGETGAVVKADAYGLGAEKCAPVLAAAGARTFFVAIAEE 63

Query: 68  GVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G++L R+  P   I V  G  PG    I D +L+P+I+S+ Q+  + + +     HP+ +
Sbjct: 64  GLRLRRILGPGPEICVFSGHMPGDRDAIRDADLVPMINSIDQMLMHVEGLP---GHPFGI 120

Query: 127 QVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           Q+D+G NRLG+   E  AL     + N +     L++SHLACAD+P   +N+ QL  FR 
Sbjct: 121 QLDSGMNRLGMEPAEWSALRDIALAQNPR-----LVMSHLACADEPDHAMNARQLAAFRD 175

Query: 185 LISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           +     GI+A  SL ++ G LLGP YHF +TRPG+ LYGG   ++     Q VV+ +  +
Sbjct: 176 MT---DGIDAPRSLGATGGTLLGPEYHFDMTRPGVGLYGGLPFVDA----QPVVSLDIPV 228

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I  R  L GE V YG     +  S +A  A GYADG    +       S +    G+   
Sbjct: 229 IQTRDVLPGETVGYGNTWTASAPSRVATIAGGYADGIHRAMG------SAAYVWAGETRC 282

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           K     ILG+I+MD+   D+T     E+ D++++ G    +D +A  +GT  Y++L  +G
Sbjct: 283 K-----ILGRISMDLIAVDVTG--LPELPDHVELIGLHQGVDTLADWAGTIGYEVLTSLG 335

Query: 363 TRYAKFYT 370
            RY + YT
Sbjct: 336 ARYDRSYT 343


>gi|170750293|ref|YP_001756553.1| alanine racemase [Methylobacterium radiotolerans JCM 2831]
 gi|170656815|gb|ACB25870.1| alanine racemase [Methylobacterium radiotolerans JCM 2831]
          Length = 364

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 197/362 (54%), Gaps = 15/362 (4%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL IDL A+  NW  + A    A  AAVVK +AYG G  ++ PAL+ AG + FFV  + E
Sbjct: 16  RLTIDLGAIAANWRILAARGAGADCAAVVKADAYGCGIGRVGPALWAAGCRTFFVAHLSE 75

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           GV  R   P+A I+VL G+  G         L PV+ S  +L+ ++     G   P AL 
Sbjct: 76  GVAARAALPEAAIYVLNGLPLGAAAAFAAHGLRPVLGSAEELSDWAAF--AGNRPPAALH 133

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NRLGLS+ EALD   ++   + G + L++SH   A+ P   VN+ Q+  F  + +
Sbjct: 134 VDTGMNRLGLSVPEALDLAGDARIAEAG-IDLLLSHFVSAETPDDPVNARQIADFARVRA 192

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            Y G+ ASLA+SSGI L    H  L RPG +L+GG      ++PM+ VV  EA I  +R 
Sbjct: 193 AYPGLRASLANSSGIFLDGARH-DLLRPGYALFGGNPTPGAANPMRPVVRLEATIAQVRG 251

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AG    Y G+   T  S +A  ++GYADG+P ++SG            G+  + G   
Sbjct: 252 VAAGATAGYNGRWTATAPSRLATLSLGYADGFPRSISGR-----------GQALVGGVPC 300

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PILG ++MD+ + D+T + +   G    + G  + +D V  A+GT  Y++L  +G+RY +
Sbjct: 301 PILGSVSMDLIILDVTAAPAARRGAAAVLIGDRLDIDTVGRAAGTIGYEILTGLGSRYVR 360

Query: 368 FY 369
            Y
Sbjct: 361 TY 362


>gi|312113724|ref|YP_004011320.1| alanine racemase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218853|gb|ADP70221.1| alanine racemase [Rhodomicrobium vannielii ATCC 17100]
          Length = 384

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 197/364 (54%), Gaps = 9/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L I L AL+ N+      S  A TAAVVK NAYGLG + +  AL     + FFV +++E 
Sbjct: 24  LVIRLPALRRNYRRAAEASLKAETAAVVKANAYGLGIQPVLTALQKETARTFFVATLDEA 83

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQ 127
           + LR +   A I+ L G+ PG   +  D  L PV++S+ ++  +S       +  P A+Q
Sbjct: 84  LALRTFANDATIYTLNGLMPGTSAVYRDARLRPVLNSLAEVEEWSAYCREHEARLPAAIQ 143

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  R+GL  + A          +  + ++++SHL  AD+P   +N VQ +RF  + S
Sbjct: 144 FDTGMCRVGLEPEAADALAEKPELLQPFRPAVLMSHLVRADEPMHPLNEVQFKRFEAVTS 203

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + GI  SL +S+G LL   YH  L RPGI++YGG  +  +    + VV    RI+ +R 
Sbjct: 204 LFPGIAKSLVNSAGCLLRRKYHLDLARPGIAIYGGNPQKVEPSQFEPVVWLFGRIVQVRH 263

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G  V YGG + L RDS IA   +GYADGY   +S  D++       G  G I  + +
Sbjct: 264 GEKGFTVGYGGTETLRRDSRIATVGVGYADGYFRGVSSSDAKP------GAVGHIGEHAL 317

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++MD+T FD TD     +  G ++++ G    +DD+A  +GT  Y++L  +G RY
Sbjct: 318 PLIGRVSMDLTTFDATDVPEALVHRGGFVELLGEKTTVDDLARHAGTIGYEVLTSLGRRY 377

Query: 366 AKFY 369
            + Y
Sbjct: 378 HRVY 381


>gi|83269232|ref|YP_418523.1| alanine racemase [Brucella melitensis biovar Abortus 2308]
 gi|20531982|sp|Q8YD03|ALR_BRUME RecName: Full=Alanine racemase
 gi|123545437|sp|Q2YIU9|ALR_BRUA2 RecName: Full=Alanine racemase
 gi|82939506|emb|CAJ12478.1| Alanine racemase:Protein of unknown function
           UPF0001:ATP/GTP-binding site motif A (P-loop) [Brucella
           melitensis biovar Abortus 2308]
          Length = 396

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 203/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 367 TIPYEILTALGNRYARVY 384


>gi|254690758|ref|ZP_05154012.1| Alr, alanine racemase [Brucella abortus bv. 6 str. 870]
 gi|256255941|ref|ZP_05461477.1| Alr, alanine racemase [Brucella abortus bv. 9 str. C68]
 gi|260756329|ref|ZP_05868677.1| alanine racemase [Brucella abortus bv. 6 str. 870]
 gi|260882153|ref|ZP_05893767.1| alanine racemase [Brucella abortus bv. 9 str. C68]
 gi|297249298|ref|ZP_06932999.1| alanine racemase [Brucella abortus bv. 5 str. B3196]
 gi|260676437|gb|EEX63258.1| alanine racemase [Brucella abortus bv. 6 str. 870]
 gi|260871681|gb|EEX78750.1| alanine racemase [Brucella abortus bv. 9 str. C68]
 gi|297173167|gb|EFH32531.1| alanine racemase [Brucella abortus bv. 5 str. B3196]
          Length = 399

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 203/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMMALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|17988719|ref|NP_541352.1| alanine racemase, catabolic [Brucella melitensis bv. 1 str. 16M]
 gi|62317251|ref|YP_223104.1| alanine racemase [Brucella abortus bv. 1 str. 9-941]
 gi|189022512|ref|YP_001932253.1| Alr, alanine racemase [Brucella abortus S19]
 gi|237816811|ref|ZP_04595803.1| alanine racemase [Brucella abortus str. 2308 A]
 gi|254695937|ref|ZP_05157765.1| Alr, alanine racemase [Brucella abortus bv. 3 str. Tulya]
 gi|254698537|ref|ZP_05160365.1| Alr, alanine racemase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731984|ref|ZP_05190562.1| Alr, alanine racemase [Brucella abortus bv. 4 str. 292]
 gi|256043789|ref|ZP_05446711.1| Alr, alanine racemase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256111166|ref|ZP_05452202.1| Alr, alanine racemase [Brucella melitensis bv. 3 str. Ether]
 gi|260544489|ref|ZP_05820310.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260564974|ref|ZP_05835459.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|260759757|ref|ZP_05872105.1| alanine racemase [Brucella abortus bv. 4 str. 292]
 gi|260762996|ref|ZP_05875328.1| alanine racemase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261216365|ref|ZP_05930646.1| alanine racemase [Brucella abortus bv. 3 str. Tulya]
 gi|265990216|ref|ZP_06102773.1| alanine racemase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265992677|ref|ZP_06105234.1| alanine racemase [Brucella melitensis bv. 3 str. Ether]
 gi|17984530|gb|AAL53616.1| alanine racemase, catabolic [Brucella melitensis bv. 1 str. 16M]
 gi|62197444|gb|AAX75743.1| Alr, alanine racemase [Brucella abortus bv. 1 str. 9-941]
 gi|189021086|gb|ACD73807.1| Alr, alanine racemase [Brucella abortus S19]
 gi|237787624|gb|EEP61840.1| alanine racemase [Brucella abortus str. 2308 A]
 gi|260097760|gb|EEW81634.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260152617|gb|EEW87710.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|260670075|gb|EEX57015.1| alanine racemase [Brucella abortus bv. 4 str. 292]
 gi|260673417|gb|EEX60238.1| alanine racemase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260917972|gb|EEX84833.1| alanine racemase [Brucella abortus bv. 3 str. Tulya]
 gi|262763547|gb|EEZ09579.1| alanine racemase [Brucella melitensis bv. 3 str. Ether]
 gi|263000885|gb|EEZ13575.1| alanine racemase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 399

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 203/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|256262185|ref|ZP_05464717.1| alanine racemase [Brucella melitensis bv. 2 str. 63/9]
 gi|263091881|gb|EEZ16203.1| alanine racemase [Brucella melitensis bv. 2 str. 63/9]
 gi|326411074|gb|ADZ68138.1| Alr, alanine racemase [Brucella melitensis M28]
 gi|326554365|gb|ADZ89004.1| Alr, alanine racemase [Brucella melitensis M5-90]
          Length = 399

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 203/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVEMIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|225686682|ref|YP_002734654.1| alanine racemase [Brucella melitensis ATCC 23457]
 gi|225642787|gb|ACO02700.1| alanine racemase [Brucella melitensis ATCC 23457]
          Length = 396

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 203/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVEMIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 367 TIPYEILTALGNRYARVY 384


>gi|51104395|gb|AAT96856.1| DadX [Rhizobium etli]
          Length = 377

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 196/368 (53%), Gaps = 19/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E 
Sbjct: 23  LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS---KLMSCGVSHPY 124
           V+LR      A+IFVL G+ PG E    ++ +IPV++S+ Q   +S   +L++   S P 
Sbjct: 83  VRLRPALAEDAQIFVLNGLQPGNEVACAESGIIPVLNSLAQWRQWSATARLLT--RSLPA 140

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            LQ DTG +RLG   +E  +      +    ++  I+SHLACAD+  S  N  QL     
Sbjct: 141 VLQFDTGMSRLGFPWEERAELAAVIGDGANVEILFIMSHLACADELDSGQNGDQLAEMAR 200

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           +   + G + S A+S G+ LG  YH  L RPGI+LYGG      ++PM+ VV  +  ++ 
Sbjct: 201 IADEFPGFDISFANSGGLFLGDAYHGVLARPGIALYGGAPNAGGTNPMEPVVRLDVAVVQ 260

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R   +G  + YGG     R++ +A  A GYADG P +L              G  + KG
Sbjct: 261 TRTVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDC-----------GAVYHKG 309

Query: 305 YMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
             +PI+G+++MD    DIT       E     ++ GP+  L+DVA A+GT +Y++L  +G
Sbjct: 310 IRLPIVGRVSMDSATVDITALPEGGAEAWKPCRMLGPNQTLEDVAGAAGTISYEILTGLG 369

Query: 363 TRYAKFYT 370
            RY + Y 
Sbjct: 370 DRYDRQYC 377


>gi|84515510|ref|ZP_01002872.1| alanine racemase [Loktanella vestfoldensis SKA53]
 gi|84510793|gb|EAQ07248.1| alanine racemase [Loktanella vestfoldensis SKA53]
          Length = 345

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 205/361 (56%), Gaps = 26/361 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL IDL A+  NW +++A++ N +TAAV+K + YGLG   IA AL+ AGV+ FFV   EE
Sbjct: 5   RLTIDLDAVVANWRALDAMT-NCKTAAVIKADGYGLGSVNIAKALFKAGVRQFFVAVAEE 63

Query: 68  GVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
              +R    P+  I V  G   G    I D NL P+++SV Q+T + + +     HP+ +
Sbjct: 64  AAPIRAELGPRPEINVFSGHMKGDTAAIRDLNLTPMLNSVEQVTHHFETLP---GHPFGI 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLGL +QE       + ++     +L++SHLACAD+P   +N  QL  F  ++
Sbjct: 121 QLDTGMNRLGLEMQEWAAIAGLALDQN---PTLVMSHLACADEPDHPMNPHQLANFH-MM 176

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +    +  SL+++ GILLGP+YHF LTRPGI LY G D  +   P   V+  E  ++ IR
Sbjct: 177 TDGISVPRSLSATGGILLGPDYHFDLTRPGIGLY-GADPFSDGTP---VIELEFPVVQIR 232

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               GE+V YG   +  R S IA  + GYADG   +LS        ++F  GK   K   
Sbjct: 233 DVAQGEVVGYGNSWQAERASRIATISGGYADGIIRSLS------DRAIFYHGKTPCK--- 283

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
             ++G+++MD+   D+TD LS E    + +   +  +DDVA  +GT  Y+LL ++G RY 
Sbjct: 284 --LVGRVSMDLMTIDVTD-LS-EDPKALSLICAEQTVDDVARRAGTIGYELLTQLGGRYT 339

Query: 367 K 367
           +
Sbjct: 340 R 340


>gi|254703242|ref|ZP_05165070.1| Alr, alanine racemase [Brucella suis bv. 3 str. 686]
 gi|260567824|ref|ZP_05838293.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261753873|ref|ZP_05997582.1| alanine racemase [Brucella suis bv. 3 str. 686]
 gi|260154489|gb|EEW89570.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261743626|gb|EEY31552.1| alanine racemase [Brucella suis bv. 3 str. 686]
          Length = 399

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|260167680|ref|ZP_05754491.1| Alr, alanine racemase [Brucella sp. F5/99]
 gi|261757116|ref|ZP_06000825.1| alanine racemase [Brucella sp. F5/99]
 gi|261737100|gb|EEY25096.1| alanine racemase [Brucella sp. F5/99]
          Length = 399

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|254720214|ref|ZP_05182025.1| Alr, alanine racemase [Brucella sp. 83/13]
 gi|265985224|ref|ZP_06097959.1| alanine racemase [Brucella sp. 83/13]
 gi|306838644|ref|ZP_07471480.1| alanine racemase [Brucella sp. NF 2653]
 gi|264663816|gb|EEZ34077.1| alanine racemase [Brucella sp. 83/13]
 gi|306406287|gb|EFM62530.1| alanine racemase [Brucella sp. NF 2653]
          Length = 399

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTILSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NKS--HPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKEPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVAKGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|326405358|ref|YP_004285440.1| alanine racemase [Acidiphilium multivorum AIU301]
 gi|325052220|dbj|BAJ82558.1| alanine racemase [Acidiphilium multivorum AIU301]
          Length = 357

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/360 (36%), Positives = 194/360 (53%), Gaps = 14/360 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ID  A+  NW ++ A       A VVK +AYGLG   IAPAL  AG + FFV +++E 
Sbjct: 6   LTIDPGAVAANWQALAARHAG-EVAGVVKADAYGLGAALIAPALAAAGCRSFFVATLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR   P ARI VL G  PG+E+ +    L PV+ S+     +        + P  L +
Sbjct: 65  LSLRALLPAARIGVLNGCPPGEEETMRARELRPVLGSLAACARWRGAAGDDEAPPSFLHL 124

Query: 129 DTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG NRLGL   EA     H +    LG L+ +++HL  A++P +  N+ Q ERF    +
Sbjct: 125 DTGMNRLGLDRDEAAHLIAHPTLLDGLG-LTHVMTHLVAAEEPDASANAAQRERFAAFAA 183

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            +  +  SLA+SSG+ LGP +   L RPG +LYGG      ++PM+  +   A I+ IR 
Sbjct: 184 RFPWLRTSLANSSGLFLGPGFGSDLARPGYALYGGNPTPTAANPMRPAIALAAPILQIRA 243

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             +GE V Y G  +  R S IA   +GYADG P +LS   +              +G ++
Sbjct: 244 IASGETVGYNGTWRAARPSRIATIGVGYADGLPRSLSNRLTAR-----------WQGKII 292

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P+ G+++MD+T FD+T+   I  GD I++ GP   +D +A  +GT  Y++L  +G RY +
Sbjct: 293 PVAGRLSMDLTTFDVTEHPDIAPGDVIELIGPGHDIDAIAAEAGTIGYEILTSLGPRYRR 352


>gi|225629379|ref|ZP_03787412.1| alanine racemase [Brucella ceti str. Cudo]
 gi|254705613|ref|ZP_05167441.1| Alr, alanine racemase [Brucella pinnipedialis M163/99/10]
 gi|256029226|ref|ZP_05442840.1| Alr, alanine racemase [Brucella pinnipedialis M292/94/1]
 gi|261313023|ref|ZP_05952220.1| alanine racemase [Brucella pinnipedialis M163/99/10]
 gi|265986214|ref|ZP_06098771.1| alanine racemase [Brucella pinnipedialis M292/94/1]
 gi|225615875|gb|EEH12924.1| alanine racemase [Brucella ceti str. Cudo]
 gi|261302049|gb|EEY05546.1| alanine racemase [Brucella pinnipedialis M163/99/10]
 gi|264658411|gb|EEZ28672.1| alanine racemase [Brucella pinnipedialis M292/94/1]
          Length = 399

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|260433528|ref|ZP_05787499.1| alanine racemase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417356|gb|EEX10615.1| alanine racemase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 344

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 198/365 (54%), Gaps = 30/365 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+L AL NNW +++A + +  T AVVK +AYGLG   +A AL   GV+ FFV   EE
Sbjct: 5   RLTINLHALVNNWRALDAKT-DVETGAVVKADAYGLGAGPVASALAEEGVRKFFVAVTEE 63

Query: 68  GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G  +R    P   IFV  G   G   ++ D +L+P+++S  Q   + + +     HP+ L
Sbjct: 64  GAAVRRAIGPGPLIFVFSGHMEGDADLLRDHDLVPLLNSPEQFQRHIQALPV---HPFGL 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLGL   E  D++      +     L++SHLACAD+P   +N  QLE FR + 
Sbjct: 121 QLDTGMNRLGL---EPADWSALRNRAEALNPVLVMSHLACADEPDHPMNRQQLEAFRGMT 177

Query: 187 SHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
              +G+ A  SLA++ G+LLGP YHF L RPGI LYGG      + P   VVT +  +I 
Sbjct: 178 ---EGVSAPRSLAATGGMLLGPEYHFDLCRPGIGLYGGL-PFTAAKP---VVTVDLPVIQ 230

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R    GE V YG   K  R S IA  A GYADG    + G           G   F   
Sbjct: 231 VRDLAVGESVGYGNTWKARRPSRIATVAAGYADGLHRAIGG-----------GIDAFAGN 279

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              P++G+I+MD+   D+TD       + ++I      +DD+A A+GT  Y++L  +G+R
Sbjct: 280 LPCPVVGRISMDLITIDVTDLPHTP--ERLRILNGHQTVDDLAEAAGTIGYEILTSLGSR 337

Query: 365 YAKFY 369
           Y++ Y
Sbjct: 338 YSRGY 342


>gi|306846133|ref|ZP_07478695.1| alanine racemase [Brucella sp. BO1]
 gi|306273384|gb|EFM55245.1| alanine racemase [Brucella sp. BO1]
          Length = 399

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVALLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NKS--HPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKEPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVAKGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|218532193|ref|YP_002423009.1| alanine racemase [Methylobacterium chloromethanicum CM4]
 gi|218524496|gb|ACK85081.1| alanine racemase [Methylobacterium chloromethanicum CM4]
          Length = 342

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 188/351 (53%), Gaps = 14/351 (3%)

Query: 19  NWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78
           NW ++ A +  A   AVVK +AYG G   +APAL+ AG + FFV  + EG+  R   P+A
Sbjct: 4   NWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKMLPEA 63

Query: 79  RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS 138
            ++VL G+ PG  +      L PV+    +L  +++ M  G   P AL VDTG NRLGLS
Sbjct: 64  ALYVLNGLPPGHAEAFRAHRLRPVLGDAQELAEWAEAMQGG--GPAALHVDTGMNRLGLS 121

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198
           + EAL    +    + G + L++SHL  A+ P   +N+ Q   F  + + +  + ASLA+
Sbjct: 122 VAEALALAGDPVIARAG-IDLVMSHLVSAELPDDPLNARQAADFARVRAAFPQMRASLAN 180

Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           SSG  L  +    L RPG +L+GG     + +PM+ VV  EA I+ +R   AG    Y  
Sbjct: 181 SSGTCLANDARHDLLRPGYALFGGNPDPGQPNPMRPVVRLEATILQVRDVEAGATCGYNA 240

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
           + +      +A  ++GYADGYP + S  +S H+          + G   PI+G I+MD+ 
Sbjct: 241 RWQAPAPRRLATLSLGYADGYPRSAS--NSGHA---------LVGGMPCPIVGLISMDLI 289

Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + D+TD+     G    + G  + +D V  A+GT  Y++L  +G+RY + Y
Sbjct: 290 ILDVTDASQARRGGTATLIGDSLDIDTVGQAAGTIGYEILTSLGSRYVRNY 340


>gi|163853336|ref|YP_001641379.1| alanine racemase [Methylobacterium extorquens PA1]
 gi|163664941|gb|ABY32308.1| alanine racemase [Methylobacterium extorquens PA1]
          Length = 342

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 189/351 (53%), Gaps = 14/351 (3%)

Query: 19  NWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78
           NW ++ A +  A   AVVK +AYG G   +APAL+ AG + FFV  + EG+  R   P+A
Sbjct: 4   NWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKILPEA 63

Query: 79  RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS 138
            ++VL G+ PG+ +      L PV+    +L  +++ M    + P AL VDTG NRLGLS
Sbjct: 64  ALYVLNGLPPGRAEAFRAHRLRPVLGDAQELAEWAEAMQG--AGPAALHVDTGMNRLGLS 121

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198
           + EAL    +    + G + L++SHL  A+ P   +N+ Q   F  + + +  + ASLA+
Sbjct: 122 VAEALALAGDPVIARAG-IDLVMSHLVSAERPGDPLNARQAADFARVRAAFPQMRASLAN 180

Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           SSG  L  +    L RPG +L+GG     + +PM+ VV  EA I+ +R   AG    Y  
Sbjct: 181 SSGTCLANDARHDLLRPGYALFGGNPDPGQPNPMRPVVRLEATILQVRDVEAGATCGYNA 240

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
           + +      +A  ++GYADGYP + S  +S H+          + G   PI+G I+MD+ 
Sbjct: 241 RWQAPAPRRLATLSLGYADGYPRSAS--NSGHA---------LVGGVPCPIVGLISMDLI 289

Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + D+TD+     G    + G  + +D V  A+GT  Y++L  +G+RY + Y
Sbjct: 290 ILDVTDATQARRGGTATLIGDSLDIDTVGHAAGTIGYEILTSLGSRYVRNY 340


>gi|254700123|ref|ZP_05161951.1| Alr, alanine racemase [Brucella suis bv. 5 str. 513]
 gi|261750615|ref|ZP_05994324.1| alanine racemase [Brucella suis bv. 5 str. 513]
 gi|261740368|gb|EEY28294.1| alanine racemase [Brucella suis bv. 5 str. 513]
          Length = 399

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAAYAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|23500650|ref|NP_700090.1| alanine racemase [Brucella suis 1330]
 gi|161620975|ref|YP_001594861.1| alanine racemase [Brucella canis ATCC 23365]
 gi|31076598|sp|Q8FVC1|ALR_BRUSU RecName: Full=Alanine racemase
 gi|189027529|sp|A9MCK3|ALR_BRUC2 RecName: Full=Alanine racemase
 gi|23464295|gb|AAN34095.1| alanine racemase [Brucella suis 1330]
 gi|161337786|gb|ABX64090.1| alanine racemase [Brucella canis ATCC 23365]
          Length = 396

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 367 TIPYEILTALGNRYARVY 384


>gi|167646468|ref|YP_001684131.1| alanine racemase [Caulobacter sp. K31]
 gi|167348898|gb|ABZ71633.1| alanine racemase [Caulobacter sp. K31]
          Length = 360

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 195/366 (53%), Gaps = 14/366 (3%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            E  RL +DL AL +N   + A +G A  A  VK + YGLG   +A  L++ G + F+V 
Sbjct: 2   TETSRLTLDLDALASNHAVLRAAAGGAEIAPAVKADGYGLGAALVAGRLWDEGARSFYVA 61

Query: 64  SVEEGVKLR--LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
            + EG+ LR  L    A I++L G+ PG    I   +L PV++S+PQ+  ++   + G +
Sbjct: 62  RLSEGLALRRALGDRAAAIYLLDGVTPGSAPAIEGASLTPVLNSLPQVEAWNS-HARGRA 120

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              AL +DTG NRLGL  +EA          K   ++L+ISHLACA +P   +N+ QL R
Sbjct: 121 LDAALHIDTGMNRLGLRPEEAAVLVAAMDRLKHVNITLVISHLACASEPDHPLNARQLAR 180

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           F    + +     SLA+S GI LG  YHF   RPGISLYGG  +      +Q VVT EA 
Sbjct: 181 FTEAAALFPNARRSLANSGGIFLGDPYHFDQCRPGISLYGGGPRDIPDTRIQAVVTLEAP 240

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  R    GE + YG        + +A+ A GYADG P            +    G  +
Sbjct: 241 VLQTRVVPRGESIGYGAAFTAQETTRVAILAAGYADGVPR-----------AAHPRGAVW 289

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
             G   P+LG+++MD+   DITD  +   G  +QI GPD+ +DD A A+GTT Y+LL RI
Sbjct: 290 FDGARRPMLGRVSMDLIAVDITDCDAARPGAMMQILGPDVLVDDAAAAAGTTAYELLTRI 349

Query: 362 GTRYAK 367
             R  +
Sbjct: 350 APRARR 355


>gi|148261853|ref|YP_001235980.1| alanine racemase [Acidiphilium cryptum JF-5]
 gi|226711024|sp|A5G2H9|ALR_ACICJ RecName: Full=Alanine racemase
 gi|146403534|gb|ABQ32061.1| alanine racemase [Acidiphilium cryptum JF-5]
          Length = 357

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 192/360 (53%), Gaps = 14/360 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ID  A+  NW ++ A       A VVK +AYGLG   IAPAL  AG + FFV +++E 
Sbjct: 6   LTIDPGAVAANWQALAARH-TGEVAGVVKADAYGLGAALIAPALAAAGCRSFFVATLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR   P ARI VL G  PG+E  +    L PV+ S+     +        + P  L +
Sbjct: 65  LSLRALLPAARIGVLNGCPPGEEGTMRARELRPVLGSLAACARWRGAAGDDKAPPSFLHL 124

Query: 129 DTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG NRLGL   EA     H +    LG L+ +++HL  A++P +  N+ Q ERF    +
Sbjct: 125 DTGMNRLGLDRDEAAHLIAHPTLLDGLG-LTHVMTHLVAAEEPDASANAAQRERFAAFAA 183

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            +  +  SLA+SSG+ LGP +   L RPG +LYGG      ++PM+  +   A I+ IR 
Sbjct: 184 RFPWLRTSLANSSGLFLGPGFGSDLARPGYALYGGNPTPTAANPMRPAIALAAPILQIRA 243

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             +GE V Y G  +  R S IA   +GYADG P +LS   +              +G ++
Sbjct: 244 IASGETVGYNGTWRAARPSRIATIGVGYADGLPRSLSNRLTAR-----------WQGKII 292

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P+ G+++MD+T FD+TD   I  GD I++ GP   +D  A  +GT  Y++L  +G RY +
Sbjct: 293 PVAGRLSMDLTTFDVTDHPDIAPGDVIELIGPGHDIDAFAAEAGTIGYEILTSLGPRYRR 352


>gi|227818945|ref|YP_002822916.1| alanine racemase, catabolic [Sinorhizobium fredii NGR234]
 gi|227337944|gb|ACP22163.1| alanine racemase, catabolic [Sinorhizobium fredii NGR234]
          Length = 377

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 200/367 (54%), Gaps = 19/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL+ N+  ++A    A  AAVVK +AYGLG E+++ AL+  G + FFV  + E 
Sbjct: 23  LTIDLAALQRNYRKLSAAVAPASAAAVVKADAYGLGAEQVSKALHAQGCRHFFVAHLPEA 82

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126
           +KLR   P    IFVL G+ PG E    + +++PV++S+ Q   +S      G   P  L
Sbjct: 83  LKLRPLLPNDTHIFVLNGLQPGAEITCTNADVVPVLNSLEQFRRWSFTAEKLGRVFPAVL 142

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRT 184
           Q DTG +RLG+  QE          K  G L +  I+SH+ACAD+     N+ QL   R 
Sbjct: 143 QFDTGMSRLGVPPQERTALAAEL--KGCGNLEILFIMSHVACADEADKKQNADQLAEMRV 200

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           + + + G++   A+S G+ LG +YH  L RPGI+LYGG     + +PM+ VV  E  +I 
Sbjct: 201 IAAEFAGLDVCFANSGGVFLGGDYHGVLARPGIALYGGAPTAGRYNPMEPVVRLEVAVIQ 260

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R   AG  V YGG    +  + +A  A GYADG P +LS             G  F  G
Sbjct: 261 TRTVPAGTRVGYGGAHVTSAKTRLATIAAGYADGLPRSLSDC-----------GAVFYDG 309

Query: 305 YMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
             +PI+G+++MD    DIT     ++ +G  +++ GP   L+DVA A+GT +Y++L  +G
Sbjct: 310 VRLPIVGRVSMDSITVDITALPEGTLSLGSLVEVLGPHQTLEDVAEAAGTISYEILTSLG 369

Query: 363 TRYAKFY 369
            RY + Y
Sbjct: 370 RRYERRY 376


>gi|163845038|ref|YP_001622693.1| alanine racemase [Brucella suis ATCC 23445]
 gi|189027530|sp|A9WVT5|ALR_BRUSI RecName: Full=Alanine racemase
 gi|163675761|gb|ABY39871.1| alanine racemase [Brucella suis ATCC 23445]
          Length = 396

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG +       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTQAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 367 TIPYEILTALGNRYARVY 384


>gi|254712683|ref|ZP_05174494.1| Alr, alanine racemase [Brucella ceti M644/93/1]
 gi|254715753|ref|ZP_05177564.1| Alr, alanine racemase [Brucella ceti M13/05/1]
 gi|261217513|ref|ZP_05931794.1| alanine racemase [Brucella ceti M13/05/1]
 gi|260922602|gb|EEX89170.1| alanine racemase [Brucella ceti M13/05/1]
          Length = 399

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 201/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP   L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQLLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|153008776|ref|YP_001369991.1| alanine racemase [Ochrobactrum anthropi ATCC 49188]
 gi|151560664|gb|ABS14162.1| alanine racemase [Ochrobactrum anthropi ATCC 49188]
          Length = 380

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 199/366 (54%), Gaps = 19/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+AL++N+ ++       R AAVVK +AYGLG  ++APA Y+AG +DFFV  + E 
Sbjct: 21  LTIDLSALRHNYSAIARHIAPTRAAAVVKADAYGLGASRVAPAFYDAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           + L+ +  P A ++VL G+ PG E+      ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  IALKPFIQPDATLYVLNGLQPGTEEACAREGILPVLNSLEQIENWAALATRQGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG +RLGLS +E   F  N+       +  +ISHLA  D+P +  N+ QL     L+
Sbjct: 141 QLDTGMSRLGLSPKEFERFLENATLLDAIDIKFVISHLASGDEPENAANARQLANMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +    +  + A+S G  L   YHF L RPG++LYG    +     +  V+T  AR+I +R
Sbjct: 201 ARLPKLPVAFANSGGSFLDKTYHFDLARPGVALYG----VGPKSEIIPVLTLSARVIQVR 256

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YGG         +A  A+GYADG+  +LS             G  F     
Sbjct: 257 DIDKGAAVGYGGAYIAEGPMRVATIAVGYADGWFRSLSN-----------KGAAFFGDTR 305

Query: 307 VPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+++MD    D++     ++++G  +++ GP  +L+DVA    T  Y++L  +G R
Sbjct: 306 LPIIGRVSMDSITLDVSALPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALGNR 365

Query: 365 YAKFYT 370
           YA+ Y 
Sbjct: 366 YARVYV 371


>gi|295689700|ref|YP_003593393.1| alanine racemase [Caulobacter segnis ATCC 21756]
 gi|295431603|gb|ADG10775.1| alanine racemase [Caulobacter segnis ATCC 21756]
          Length = 360

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 195/365 (53%), Gaps = 16/365 (4%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL IDL AL  N  ++ A +G+A  A  VK NAYGLG  ++A  L+  GV+ F+V  + E
Sbjct: 8   RLTIDLDALAANHAALQARAGDAEVAPAVKANAYGLGAARVADRLWAEGVRSFYVARLAE 67

Query: 68  GVKLR--LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           GV LR  L   +A I+VL G  PG    +    L PV++S+PQ+  ++     G     A
Sbjct: 68  GVALRAALGDREAAIYVLDGATPGAGDALEGARLTPVLNSLPQIEAWNAQARAG-RLKAA 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L +DTG NRLGL  +E       +   K   L L+ISHLACAD P   +N+ QLERF   
Sbjct: 127 LHLDTGMNRLGLRPEELKVLLGATDRLKRLDLELVISHLACADVPDHPMNTRQLERFSEA 186

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVVTAEARIIL 244
           ++       S A+S+G+ LG  Y F   RPGISLYGG  +  + HP ++ V T EA I+ 
Sbjct: 187 VAQLPNARKSFANSAGLFLGEAYRFDQARPGISLYGGGPE-GRPHPEIRAVATVEAPILQ 245

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R    GE V YG        + IA+   GYADG P       + H       G+ +  G
Sbjct: 246 VRVVPRGETVGYGATWTAPDTTRIAIVGAGYADGVP------RASHPK-----GQVWFDG 294

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
               +LG+++MD+   D+TD  +   G  +++ G ++ +DD A A+GTT Y+LL  I  R
Sbjct: 295 ARRQMLGRVSMDLMAVDVTDCDAARPGAMVELLGSNMPIDDAATAAGTTAYELLTNIAPR 354

Query: 365 YAKFY 369
             + Y
Sbjct: 355 ARRIY 359


>gi|261320388|ref|ZP_05959585.1| alanine racemase [Brucella ceti M644/93/1]
 gi|261293078|gb|EEX96574.1| alanine racemase [Brucella ceti M644/93/1]
          Length = 396

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 201/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP   L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQLLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 367 TIPYEILTALGNRYARVY 384


>gi|306841349|ref|ZP_07474058.1| alanine racemase [Brucella sp. BO2]
 gi|306288652|gb|EFM59988.1| alanine racemase [Brucella sp. BO2]
          Length = 399

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 203/379 (53%), Gaps = 30/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           + L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  MALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NKS--HPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKEPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVAKGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALAS 350
               G  F     +PI+G+++MD    D+T SL    +++G  +++ GP  +L+DVA   
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVT-SLPEGMLKLGSLVELIGPHQRLEDVARDC 368

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++L  +G RYA+ Y
Sbjct: 369 DTIPYEILTALGNRYARVY 387


>gi|148557977|ref|YP_001257844.1| alanine racemase [Brucella ovis ATCC 25840]
 gi|166919547|sp|A5VVI9|ALR_BRUO2 RecName: Full=Alanine racemase
 gi|148369262|gb|ABQ62134.1| alanine racemase [Brucella ovis ATCC 25840]
          Length = 396

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 201/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+   AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLPLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 367 TIPYEILTALGNRYARVY 384


>gi|116249082|ref|YP_764923.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841]
 gi|109940037|sp|Q9RAE7|ALR2_RHIL3 RecName: Full=Alanine racemase, catabolic
 gi|115253732|emb|CAK12125.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 377

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 191/368 (51%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E 
Sbjct: 23  LMIDLAALGRNYRKLVSMLAPVRAGAVVKADAYGLGAERVARTLYSEGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHP 123
           V+LR      A+IFVL G+ PG E    +  ++PV++S+ Q   +S     L  C    P
Sbjct: 83  VRLRPALAHDAQIFVLNGLQPGNEIACAEMGIVPVLNSLAQWRQWSAAARILKRC---LP 139

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             LQ DTG +RLG   +E  +      +    ++  I+SHLA ADD  S  N  Q     
Sbjct: 140 AVLQFDTGMSRLGFPREERRELAAALRDGSNVEILFIMSHLASADDMGSEQNGEQFAEMS 199

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            +   + G + S A+S G+ LG  Y+  L RPGI+LYGG     + +PM+ VV+    ++
Sbjct: 200 RIADEFPGFDISFANSGGVFLGEAYYGVLARPGIALYGGAPNAGEKNPMEPVVSLNVAVV 259

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R   AG  V YGG     R++ +A  A GYADG P  LS             G  + K
Sbjct: 260 QTRTVPAGAKVGYGGAHVTQRETRLATIAAGYADGLPRCLSDR-----------GAVYFK 308

Query: 304 GYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G  +PI+G+++MD T  DIT     ++  G  +++ G    L+D+A  +GT +Y++L  +
Sbjct: 309 GVRLPIVGRVSMDSTTVDITALPEGALTFGSLVEVLGRHQTLEDIARDAGTISYEILTGL 368

Query: 362 GTRYAKFY 369
           G RY + Y
Sbjct: 369 GDRYDRQY 376


>gi|254563262|ref|YP_003070357.1| alanine racemase [Methylobacterium extorquens DM4]
 gi|254270540|emb|CAX26543.1| putative alanine racemase (alr-like) [Methylobacterium extorquens
           DM4]
          Length = 342

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 185/351 (52%), Gaps = 14/351 (3%)

Query: 19  NWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78
           NW ++ A +  A   AVVK +AYG G   +APAL+ AG + FFV  + EG+  R   P+A
Sbjct: 4   NWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKILPEA 63

Query: 79  RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS 138
            ++VL G+ PG  +      L PV+    +L  +++ M    + P AL VDTG NRLGLS
Sbjct: 64  ALYVLNGLPPGHAEAFRAHRLRPVLGDAQELAEWAEAMQG--AGPAALHVDTGMNRLGLS 121

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198
           + EAL    +    + G + L++SHL  A+ P   +N+ Q   F  + + +  + ASLA+
Sbjct: 122 VAEALALAGDPVIARAG-IDLVMSHLVSAELPDDPLNTRQAADFARVRAAFPQMRASLAN 180

Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           SSG  L  +    L RPG +L+GG     + +PM+ VV  EA I+ +R   AG    Y  
Sbjct: 181 SSGTCLANDARHDLLRPGYALFGGNPDPGQPNPMRPVVRLEATILQVRDVEAGATCGYNA 240

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
           + +      +A  ++GYADGYP + S             G   + G   PI+G I+MD+ 
Sbjct: 241 RWQAPAPRRLATLSLGYADGYPRSASN-----------SGHALVGGVPCPIVGLISMDLI 289

Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + D+TD+     G    + G  + +D V  A+GT  Y++L  +G+RY + Y
Sbjct: 290 ILDVTDATQARRGGTATLIGDALDIDTVGQAAGTIGYEILTSLGSRYVRDY 340


>gi|254488701|ref|ZP_05101906.1| alanine racemase [Roseobacter sp. GAI101]
 gi|214045570|gb|EEB86208.1| alanine racemase [Roseobacter sp. GAI101]
          Length = 376

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 201/363 (55%), Gaps = 28/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NWH +N +S   +T AVVK +AYGLG +++AP L   G + FFV + +EG
Sbjct: 38  LTIDLHAIAANWHMLNRMS-QGQTGAVVKADAYGLGIDRVAPVLAQEGARQFFVATTKEG 96

Query: 69  VKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V L R+  P   I +  G  PG  + I    L P+I+SV QL  + + +     HP+ LQ
Sbjct: 97  VALRRVLGPGPAINLFAGHMPGDAEKIRSAQLTPMINSVDQLIGHVETLP---GHPFGLQ 153

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NRLG+   E       + ++      LIISHLACAD+P   +N+ QL+ FR + +
Sbjct: 154 LNTGMNRLGMDASEWGALRDIALSQ---HPRLIISHLACADEPGHKMNAAQLKSFRDMTA 210

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             K I  SL ++ GILLG +YHF LTRPGI LYGG   ++     Q VVT +  +I +R+
Sbjct: 211 GLK-IPLSLGATGGILLGADYHFSLTRPGIGLYGGLPFVDA----QPVVTLDLPVIQVRE 265

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-SGLDSEHSPSVFLGGKGFIKGYM 306
             AG  V Y       R S IA  + GYADG    + +G    H+            G  
Sbjct: 266 VPAGGSVGYACGWIAPRPSRIATVSGGYADGLIRAMGNGATMTHN------------GTK 313

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           VP++G+++MD+   DIT +L+   G ++Q+ G    +D VA  +GT  Y++L  +G RY 
Sbjct: 314 VPVVGRVSMDLITVDIT-TLTDTPG-HLQLLGQHQSVDTVAGFAGTIGYEILTSLGPRYD 371

Query: 367 KFY 369
           + Y
Sbjct: 372 RVY 374


>gi|256157422|ref|ZP_05455340.1| Alr, alanine racemase [Brucella ceti M490/95/1]
 gi|256253600|ref|ZP_05459136.1| Alr, alanine racemase [Brucella ceti B1/94]
 gi|261220737|ref|ZP_05935018.1| alanine racemase [Brucella ceti B1/94]
 gi|265995910|ref|ZP_06108467.1| alanine racemase [Brucella ceti M490/95/1]
 gi|260919321|gb|EEX85974.1| alanine racemase [Brucella ceti B1/94]
 gi|262550207|gb|EEZ06368.1| alanine racemase [Brucella ceti M490/95/1]
          Length = 399

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 201/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYA G   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYAAGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 370 TIPYEILTALGNRYARVY 387


>gi|256015684|ref|YP_003105693.1| alanine racemase [Brucella microti CCM 4915]
 gi|255998344|gb|ACU50031.1| alanine racemase [Brucella microti CCM 4915]
          Length = 396

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 201/378 (53%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+L G         +DK+   NK   H + 
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALCGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +G RYA+ Y
Sbjct: 367 TIPYEILTALGNRYARVY 384


>gi|5805088|emb|CAB53547.1| alanine racemase [Rhizobium leguminosarum bv. viciae]
          Length = 354

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 190/366 (51%), Gaps = 21/366 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E V+
Sbjct: 2   IDLAALGRNYRKLVSMLAPVRAGAVVKADAYGLGAERVARTLYSEGCRHFFVAQFVEAVR 61

Query: 71  LR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHPYA 125
           LR      A+IFVL G+ PG E    +  ++PV++S+ Q   +S     L  C    P  
Sbjct: 62  LRPALAHDAQIFVLNGLQPGNEIACAEMGIVPVLNSLAQWRQWSAAARILKRC---LPAV 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           LQ DTG +RLG   +E  +      +    ++  I+SHLA ADD  S  N  Q      +
Sbjct: 119 LQFDTGMSRLGFPREERRELAAALRDGSNVEILFIMSHLASADDMGSEQNGEQFAEMSRI 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
              + G + S A+S G+ LG  Y+  L RPGI+LYGG     + +PM+ VV+    ++  
Sbjct: 179 ADEFPGFDISFANSGGVFLGEAYYGVLARPGIALYGGAPNAGEKNPMEPVVSLNVAVVQT 238

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AG  V YGG     R++ +A  A GYADG P  LS             G  + KG 
Sbjct: 239 RTVPAGAKVGYGGAHVTQRETRLATIAAGYADGLPRCLSDR-----------GAVYFKGV 287

Query: 306 MVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            +PI+G+++MD T  DIT     ++  G  +++ G    L+D+A  +GT +Y++L  +G 
Sbjct: 288 RLPIVGRVSMDSTTVDITALPEGALTFGSLVEVLGRHQTLEDIARDAGTISYEILTGLGD 347

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 348 RYDRQY 353


>gi|220924500|ref|YP_002499802.1| alanine racemase [Methylobacterium nodulans ORS 2060]
 gi|254802370|sp|B8IEC7|ALR_METNO RecName: Full=Alanine racemase
 gi|219949107|gb|ACL59499.1| alanine racemase [Methylobacterium nodulans ORS 2060]
          Length = 370

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 195/370 (52%), Gaps = 15/370 (4%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S+   RL IDL AL  NW  + A +  A  AAV+K +AYG G  ++APAL++AG + FFV
Sbjct: 5   SSHGARLTIDLGALAANWRRLAAEAAGAECAAVIKADAYGCGIAQVAPALWDAGCRTFFV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             + E  + R     A I+VL G  PG           PV+ S  ++  +++   S G  
Sbjct: 65  AHLSEAERTRAVLSDATIYVLNGFPPGSAPAYRAMGFRPVLGSRSEIAEWAQACRSLGER 124

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P AL VDTG NRLGL+  EA+D   ++      Q +L++SHL  A+ P   + + Q+  
Sbjct: 125 LPAALHVDTGMNRLGLNPAEAIDLAGDAVLGAF-QPTLLMSHLVSAEVPGDAITARQIAE 183

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           F  +   Y  + ASLA+S+GI LG     ++ RPG +LYGG     + +PM+ VV  EA 
Sbjct: 184 FARVRMAYPALPASLANSAGIFLGKAARHEIVRPGYALYGGNPTPERENPMRPVVRLEAA 243

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I+ +R+  AGE   Y  +       L+A  ++GYADGYP   SG             +  
Sbjct: 244 ILQLREVAAGETAGYNARWTAPGPRLLATLSLGYADGYPRAGSGR-----------AEAL 292

Query: 302 IKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           + G   P +G I+MD+ + D+T +   ++  G  + + G  + LD+V   +GT  Y++L 
Sbjct: 293 VGGVRCPFVGTISMDLVILDVTQAPPEAVRRGAPVVLIGDGLTLDEVGQRAGTIGYEILT 352

Query: 360 RIGTRYAKFY 369
            +G+RY + Y
Sbjct: 353 NLGSRYDRHY 362


>gi|209885499|ref|YP_002289356.1| alanine racemase [Oligotropha carboxidovorans OM5]
 gi|209873695|gb|ACI93491.1| alanine racemase [Oligotropha carboxidovorans OM5]
          Length = 412

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/364 (34%), Positives = 194/364 (53%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW ++ + +  A  +AV+K +AYG G   +   L +AG + FFV ++ E 
Sbjct: 26  LTIDLDAIVANWKALESRTVPAECSAVIKADAYGCGLTPVTRKLASAGCKTFFVATLAEA 85

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
            + R   P+A I+VL G+           +  PVI  + +L  +       G     ALQ
Sbjct: 86  KQAREAAPKAVIYVLNGLFANCGDDFAKIDARPVIGDLNELAEWDAFRRTRGWRGQAALQ 145

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NRLGL+  EA            G ++L++SHLACA+D ++ +N  QL  FR + S
Sbjct: 146 INTGMNRLGLNPDEARGLAPRIREPDHG-IALVLSHLACAEDVANPMNGRQLAAFRDVAS 204

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL +SSGI LGP++H  L RPG +LYG        +PMQ V+  + RI  IR 
Sbjct: 205 EFSGVPASLVNSSGIFLGPHFHMDLARPGAALYGLNPTPGSDNPMQPVIGLKVRIAQIRS 264

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
               E V YG      R + +A+ + GYADGY    SG++   S  V + G+        
Sbjct: 265 VPKDETVGYGALWHAKRPTRLAIVSAGYADGYFRAASGIEGTRSAQVVVAGQ------RC 318

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI+G+++MD+   DITD    ++  G ++ + G  I  D+++   GT  Y++L  +G RY
Sbjct: 319 PIVGRVSMDLMAIDITDVPHGAVRRGHFVTLIGDGITADELSHHFGTIGYEVLTSLGHRY 378

Query: 366 AKFY 369
           A+ Y
Sbjct: 379 ARDY 382


>gi|182679264|ref|YP_001833410.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635147|gb|ACB95921.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 379

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 198/372 (53%), Gaps = 22/372 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW ++ A+ G A   AVVK +AYG+G E +   L  AG + +FV  V EG
Sbjct: 18  LSVDLAAIVRNWRTLQAVCGEAECGAVVKADAYGVGLEPVVRELSAAGCKTYFVAHVFEG 77

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-------TFYSKLMSCGVS 121
            + R     A I+VL G+ PG      +  L PV+ S+P++         + +  + G +
Sbjct: 78  RRARAIDASAIIYVLNGLVPGTAPAYLEHGLRPVLCSLPEIEEWLQFCALFGRRSAEGET 137

Query: 122 HPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            P ALQ+DTG NRLGL L   + A D T  S N KL     I+S    +   +      Q
Sbjct: 138 LPAALQLDTGLNRLGLRLDQIERAADLTE-SLNIKL-----ILSQFIWSGQSNLARCETQ 191

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +  F ++   +K + AS+A+S+GI L     + L RPG +LYGG     + +PMQ V+  
Sbjct: 192 VSLFESMRQPWKQVPASIANSAGIFLERTPLYDLVRPGYALYGGNPAPGRPNPMQGVLRL 251

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           EARI+ +     GE V Y G+        +A  +IGYADG P   S L SE  P    GG
Sbjct: 252 EARILQVNHVEQGETVGYDGRYLAKSPRRLATISIGYADGIP--RSALGSEVHP----GG 305

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           +  +KG   P +G+++MD+T+ DIT +     GD +++ G  I +D++A  S T  Y++L
Sbjct: 306 EVVVKGVRCPFVGRVSMDLTVVDITLAPEAMRGDTVELIGKAISIDELATRSRTIGYEIL 365

Query: 359 VRIGTRYAKFYT 370
             +G+R+ + YT
Sbjct: 366 TNLGSRFYRRYT 377


>gi|86361167|ref|YP_473054.1| alanine racemase protein [Rhizobium etli CFN 42]
 gi|86285269|gb|ABC94327.1| alanine racemase protein [Rhizobium etli CFN 42]
          Length = 377

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 195/367 (53%), Gaps = 19/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E 
Sbjct: 23  LTIDLAALGRNYSKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V+LR      A+IFVL G+ PG E    ++ ++PV++S+ Q   +S+       S P  L
Sbjct: 83  VRLRPALAKAAQIFVLNGLQPGSELACAESGIVPVLNSLAQWRQWSETARRLKRSLPAVL 142

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLG   +E  +      +    ++  I+SHLACADD  S  N  Q+     + 
Sbjct: 143 QFDTGMSRLGFPEEERAELAAAIRDGANVEILFIMSHLACADDLESSQNGEQIAEMARIA 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             + G + S A+S G+ LG  YH  L RPGI+LYGG       +PM+ V+  +  ++  R
Sbjct: 203 DEFPGFDISFANSGGVFLGDAYHGVLARPGIALYGGAPNAGGKNPMEPVLRLDVAVVQTR 262

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI--KG 304
              +G  + YGG       + +A  A GYADG P +             LG +G +  KG
Sbjct: 263 TVPSGTKIGYGGAYVTRSQTRLATIAAGYADGLPRS-------------LGDRGAVYHKG 309

Query: 305 YMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
             +PI+G+++MD    DIT     ++ +G  +++ GP+  L+DVA  +GT +Y++L  +G
Sbjct: 310 TRLPIVGRVSMDSATVDITALPEGALSLGSLVEVLGPNQTLEDVAGDAGTISYEILTGLG 369

Query: 363 TRYAKFY 369
            RY + Y
Sbjct: 370 DRYDRHY 376


>gi|218674907|ref|ZP_03524576.1| alanine racemase protein [Rhizobium etli GR56]
          Length = 338

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 184/347 (53%), Gaps = 21/347 (6%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR-LYTPQARIFVLYGIHPG 89
           R  AVVK +AYGLG E++A  LY+ G + FFV    E V+LR      A+IFVL G+ PG
Sbjct: 6   RAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEAVRLRPALAESAQIFVLNGLQPG 65

Query: 90  QEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
            E    ++ ++PV++S+ Q   +S    +L  C    P  LQ DTG +RLG   +E  + 
Sbjct: 66  NEVACAESGIVPVLNSLAQWRQWSATARRLKRC---LPAVLQFDTGMSRLGFPWEERAEL 122

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG 205
                +    ++  I+SHLACADD  S  N  Q      +   + G + S A+S G+ LG
Sbjct: 123 AAALRDGANVEILFIMSHLACADDLESSQNGEQFAEMARIADEFPGFDISFANSGGVFLG 182

Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
             YH  L RPGI+LYGG      ++PM+ VV  +  ++  R   +G  + YGG      +
Sbjct: 183 DAYHGVLARPGIALYGGAPSAGGTNPMEPVVRLDVAVVQTRTVPSGAKIGYGGTHVTRSE 242

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT-- 323
           + +A  A GYADG P +L              G  + KG  +PI+G+++MD    DIT  
Sbjct: 243 TRLATIAAGYADGLPRSLGDC-----------GAVYHKGIRLPIVGRVSMDSATVDITAL 291

Query: 324 DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
              ++ +G  +++ GP+  L+DVA  +GT +Y++L  +G RY + Y 
Sbjct: 292 PEGALSLGSLVEVLGPNQTLEDVAGDAGTISYEILTGLGDRYDRHYC 338


>gi|240140752|ref|YP_002965232.1| putative alanine racemase (alr-like) [Methylobacterium extorquens
           AM1]
 gi|240010729|gb|ACS41955.1| putative alanine racemase (alr-like) [Methylobacterium extorquens
           AM1]
          Length = 342

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 184/354 (51%), Gaps = 14/354 (3%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75
           +  NW ++ A +  A   AVVK +AYG G   +APAL+ AG + FFV  + EG+  R   
Sbjct: 1   MVTNWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKIL 60

Query: 76  PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRL 135
           P+A ++VL G+ PG  +      L PV+    +L  +++ M    + P AL VDTG NRL
Sbjct: 61  PEAALYVLNGLPPGHAEAFRAHRLRPVLGDAQELAEWAEAMQ--GAGPAALHVDTGMNRL 118

Query: 136 GLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEAS 195
           GL + EAL    +    + G + L++SHL  A+ P   +N+ Q   F  + + +  + AS
Sbjct: 119 GLCVAEALALAGDPVIARAG-IDLVMSHLVSAELPDDPLNARQAADFARVRAAFPQMRAS 177

Query: 196 LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVS 255
           LA+SSG  L  +    L RPG +L+GG     + + M+ VV  EA I+ +R   AG    
Sbjct: 178 LANSSGTCLANDARHDLLRPGYALFGGNPDPGQPNSMRPVVRLEATILQVRNVEAGATCG 237

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y  + +      +A  ++GYADGYP + S             G   + G   PI+G I+M
Sbjct: 238 YNARWQAPAPRRLATLSLGYADGYPRSASN-----------SGHALVGGVPCPIVGLISM 286

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D+ + D+TD+     G    + G  + +D V  A+GT  Y++L  +G+RY + Y
Sbjct: 287 DLIILDVTDATQARRGGTATLIGDSLDIDTVGQAAGTIGYEILTSLGSRYVRDY 340


>gi|89068949|ref|ZP_01156331.1| alanine racemase [Oceanicola granulosus HTCC2516]
 gi|89045530|gb|EAR51594.1| alanine racemase [Oceanicola granulosus HTCC2516]
          Length = 345

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 195/362 (53%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW +++A+ G+A T AVVK + YGLG   +A  L+ AG + FFV   EEG
Sbjct: 6   LTIDLDALAANWRALDAM-GSAETGAVVKADGYGLGVAPVARTLHKAGARRFFVAVAEEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR    P   + V  G  PG  ++I D  L+P+++S+ Q+  + + +     HP+ +Q
Sbjct: 65  AALRQALGPNVDVCVFGGHMPGDSEMIGDLGLVPMLNSLEQVLRHFEALP---GHPFGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+ + E       +  +K     L++SHLACAD+P   +N+ QL  F  +  
Sbjct: 122 LDTGMNRLGMEMSEWAAVAEIALQQK---PVLVMSHLACADEPDHEMNTRQLAEFHRMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             K +  SLA++ GILLG  Y F LTRPGI LYGG     ++ P   VVT E  +I +R 
Sbjct: 179 GIK-VPRSLAATGGILLGQEYQFDLTRPGIGLYGGR-PFEEARP---VVTLELPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R + +A  A GYADG    LS     +  S++ G          
Sbjct: 234 VEPGESVGYGNSWIAERRTRLATVAAGYADGITRHLS-----NRASLWHGDA------PC 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI G+++MD+   DITD    E  D + +      +DD+A  +GT  Y++L ++G RY +
Sbjct: 283 PIRGRVSMDLICADITD--LPETPDSLALLNGRQGVDDIADIAGTIGYEVLTQLGPRYTR 340

Query: 368 FY 369
            +
Sbjct: 341 RH 342


>gi|288962767|ref|YP_003453061.1| alanine racemase [Azospirillum sp. B510]
 gi|288915033|dbj|BAI76517.1| alanine racemase [Azospirillum sp. B510]
          Length = 375

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 194/371 (52%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +      A  +AVVK +AYGLG  ++ PAL  AG + F V   EE 
Sbjct: 16  LTVDLGAVVANWAQLRDRVAPAECSAVVKADAYGLGVARVVPALAAAGCRTFVVAQFEEA 75

Query: 69  VKLRL----YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           + +R       PQA++F L G+ PG E       ++PV++ +  +  +     S G   P
Sbjct: 76  LAVRRALEPVAPQAQVFSLGGMPPGCEGEFLANRILPVLNHLSGIASWRAFAASRGEVLP 135

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             + +DTG NRLGL   E  D   +    +   +   ++HLACA+D  + +N  QL+RFR
Sbjct: 136 AVVHIDTGMNRLGLGPDELDDLAAHPEWLEGIDVRYWMTHLACAEDFDNPMNGEQLDRFR 195

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
             ++     +AS A+SSGI  G +YHF L RPG +LYG        +PM+  V  +AR++
Sbjct: 196 DALARLPKAKASFANSSGIFHGKDYHFDLARPGCALYGVNPTPRLPNPMRGTVRLDARLL 255

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG--F 301
            +R   +   V Y    K+T    IA   IGYADGY  +             LGGKG  F
Sbjct: 256 QVRNCASPMTVGYAAAHKVTGPVRIATIGIGYADGYMRS-------------LGGKGHVF 302

Query: 302 IKGYMVPILGKITMDMTMFDIT---DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           + G   PI+G+I+MD+   D+T   +S++   G  +++ GP+  +D VA  +GT  Y+++
Sbjct: 303 VDGVAAPIVGRISMDLITIDVTGLPESVA-HAGRMVELIGPNRPVDRVAEEAGTIGYEIM 361

Query: 359 VRIGTRYAKFY 369
             +G RY + Y
Sbjct: 362 TSLGRRYHRVY 372


>gi|83942625|ref|ZP_00955086.1| alanine racemase [Sulfitobacter sp. EE-36]
 gi|83846718|gb|EAP84594.1| alanine racemase [Sulfitobacter sp. EE-36]
          Length = 344

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW ++N ++G   T AV+K NAYGLG +++AP L   G + FFV   EEG
Sbjct: 6   LSIDLNAIAANWQALNKMTG-CDTGAVIKANAYGLGVDRVAPVLAAQGARKFFVAVAEEG 64

Query: 69  VKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V L R+  P   I V  G  PG   +I    L P+I+SV Q+  + + +     H + +Q
Sbjct: 65  VALRRVLGPGPAINVFAGHMPGDADMIRSAALTPMINSVDQMIAHVEALP---GHRFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG+   E       +  +     +LI+SHLACAD+P+  +N+ QL+ FR +  
Sbjct: 122 LNSGMNRLGMDPAEWAALRDIALAQN---PTLIMSHLACADEPNHPMNARQLKTFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GI+LG +YHF LTRPGI +YGG    +       VVT +  +I +R+
Sbjct: 179 GLN-VPRSLAATGGIMLGRDYHFDLTRPGIGVYGGLPFADA----MPVVTLDVPVIQVRE 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-SGLDSEHSPSVFLGGKGFIKGYM 306
              G+ V YG      R +L+A  A GYADG    L +G    H            +G  
Sbjct: 234 VATGQPVGYGCAWTAPRPTLVATVAAGYADGLIRALGNGATFTH------------EGRK 281

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P++G+++MD+   D+T SL+ EV +++Q+ G    +D VA  +GT  Y++L  +G RY 
Sbjct: 282 LPVVGRVSMDLITVDVT-SLT-EVPEHLQLIGNYQSVDTVAGFAGTIGYEVLTALGARYD 339

Query: 367 KFY 369
           + Y
Sbjct: 340 RVY 342


>gi|144899038|emb|CAM75902.1| Alanine racemase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 369

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 203/371 (54%), Gaps = 25/371 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+ +NW ++ A + NA  A VVK + YGLG   +A AL  AG   FFV +++EG
Sbjct: 11  LSIDLDAIADNWRTLAAHAPNAEAAGVVKADGYGLGAAPVARALRKAGCTTFFVATIDEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQ 127
           + LR +   ARI VL G+ PG         LIPV++S  Q+  +S   + G    P A+ 
Sbjct: 71  ISLRPHVNDARILVLGGVLPGTGADFIGHQLIPVLNSPEQIGLWSGFAAAGGRPLPAAIH 130

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG--QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +D+G NRLGL  + A++    + N++L   Q  L++SH+ACAD+    +N  QL+RF T+
Sbjct: 131 IDSGMNRLGLD-ETAVELL-AADNRRLDGIQPVLVMSHMACADERDHAMNRQQLDRF-TV 187

Query: 186 ISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
           ++   G+ A  SLA+SS I LG +YHF L RPG  LYG     +  +P++  V    +I+
Sbjct: 188 LADRLGVSAPRSLAASSTIFLGADYHFDLIRPGAGLYGINPMPDSPNPLRQTVRLHGKIL 247

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF-- 301
            +R     + V YG   +      +A  A GYADG   +             LG +GF  
Sbjct: 248 QVRDVDTPQTVGYGASHRFKSKGRVATIACGYADGLFRS-------------LGNRGFGV 294

Query: 302 IKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           I G  VP++G+I+MD+   D++      +  G  +++ GPD  +D +A  +GT  Y++L 
Sbjct: 295 IGGVKVPVVGRISMDLITLDVSAVAPAHVHAGALVELIGPDHDVDALAAEAGTIGYEILT 354

Query: 360 RIGTRYAKFYT 370
            +G RY + Y+
Sbjct: 355 SLGRRYLRDYS 365


>gi|83953866|ref|ZP_00962587.1| alanine racemase [Sulfitobacter sp. NAS-14.1]
 gi|83841811|gb|EAP80980.1| alanine racemase [Sulfitobacter sp. NAS-14.1]
          Length = 344

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW ++N ++G   T AV+K NAYGLG +++AP L   G + FFV   EEG
Sbjct: 6   LSIDLNAIAANWQALNKMTG-CDTGAVIKANAYGLGIDRVAPVLAAQGARKFFVAVAEEG 64

Query: 69  VKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V L R+  P   I V  G  PG   +I    L P+I+SV Q+  + + +     H + +Q
Sbjct: 65  VALRRVLGPGPAINVFAGHMPGDADMIRSAALTPMINSVDQMIAHVEALP---GHRFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG+   E       +  +     +LI+SHLACAD+P+  +N+ QL+ FR +  
Sbjct: 122 LNSGMNRLGMDPAEWAALRDIALAQN---PTLIMSHLACADEPNHPMNARQLKTFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GI+LG +YHF LTRPGI +YGG    +       VVT +  +I +R+
Sbjct: 179 GLN-VPRSLAATGGIMLGRDYHFDLTRPGIGVYGGLPFADA----MPVVTLDVPVIQVRE 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-SGLDSEHSPSVFLGGKGFIKGYM 306
              G+ V YG      R +++A  A GYADG    L +G    H            +G  
Sbjct: 234 VATGQTVGYGCAWTAPRPTMVATVAAGYADGLIRALGNGATFTH------------EGRK 281

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P++G+++MD+   D+T SL+ EV +++Q+ G    +D VA  +GT  Y++L  +G RY 
Sbjct: 282 LPVVGRVSMDLITVDVT-SLT-EVPEHLQLIGNYQSVDTVAGFAGTIGYEVLTALGARYD 339

Query: 367 KFY 369
           + Y
Sbjct: 340 RVY 342


>gi|332557893|ref|ZP_08412215.1| alanine racemase [Rhodobacter sphaeroides WS8N]
 gi|332275605|gb|EGJ20920.1| alanine racemase [Rhodobacter sphaeroides WS8N]
          Length = 349

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 199/365 (54%), Gaps = 30/365 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  NW +++ ++  + +T AVVK ++YGLG  K+A AL  AG + FFV + EE
Sbjct: 6   LTIDLDAIAANWRALDQMTASDCQTGAVVKADSYGLGAAKVAHALARAGARRFFVATCEE 65

Query: 68  GVKLRLY---TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           G  +R      PQ  I V  G   G   +I D +L P+++S+ QLT + + +      P+
Sbjct: 66  GADVRRALGSGPQ--ICVFSGHMEGDTALIRDFDLTPMLNSIDQLTRHFEALG---GQPF 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            LQ+D+G NRLGL   E        F  + G   L++SHLAC+DDP   +NS QL  FR 
Sbjct: 121 GLQLDSGMNRLGLEPGEWEAVA--GFALEAGP-ELLMSHLACSDDPDHPMNSEQLGAFRA 177

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           + +   G+  SL+++ GILLGP +HF+LTRPGI LYGG     ++ P   VV     +I 
Sbjct: 178 M-TDGTGVPRSLSATGGILLGPAWHFELTRPGIGLYGGR-PFEEARP---VVRLSLPVIQ 232

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+   GE V Y         S IA  A GYADG P TLS      S +    G+     
Sbjct: 233 VREVEIGEPVGYSNTWTAEHTSTIATVAAGYADGLPRTLS------SRATLYAGR----- 281

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              P++G+++MD+   D+  S   EV + + I GP    DD+A  +GT  Y++L  +G R
Sbjct: 282 VPCPLVGRVSMDLITVDV--SHLPEVPETLDILGPHQTPDDLADTAGTIGYEILTSLGRR 339

Query: 365 YAKFY 369
           Y + Y
Sbjct: 340 YQRRY 344


>gi|239832571|ref|ZP_04680900.1| alanine racemase [Ochrobactrum intermedium LMG 3301]
 gi|239824838|gb|EEQ96406.1| alanine racemase [Ochrobactrum intermedium LMG 3301]
          Length = 380

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 194/366 (53%), Gaps = 19/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       R AAVVK +AYGLG  ++APA Y+AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIARHIAPTRAAAVVKADAYGLGASRVAPAFYDAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           + L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  +  L +  G   P  L
Sbjct: 81  IALKPFLQPDATLYVLNGLQPGTEAACARDGILPVLNSLEQIENWGALAARQGRKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG +RLGLS  E      N        +  +ISHLA  D+P +  N+ QL     L+
Sbjct: 141 QLDTGMSRLGLSASEFERLLENFALLDNIDIKFVISHLASGDEPENAANARQLANMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                +  + A+S G  L  +YHF L RPG++LYG    +   + +  V+T  AR+I +R
Sbjct: 201 VRLPKLPVAFANSGGSFLDKSYHFDLARPGVALYG----VGPENEIVPVLTLSARVIQVR 256

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YGG         +A  A+GYADG+  +LS             G  F     
Sbjct: 257 DIDKGAAVGYGGTYVAEGPMRVATIAVGYADGWFRSLSN-----------KGSAFFGDTR 305

Query: 307 VPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+++MD    D++     ++++G  +++ GP  +L+DVA    T  Y++L  +G R
Sbjct: 306 LPIIGRVSMDSITLDVSALPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALGNR 365

Query: 365 YAKFYT 370
           YA+ Y 
Sbjct: 366 YARVYV 371


>gi|315498295|ref|YP_004087099.1| alanine racemase [Asticcacaulis excentricus CB 48]
 gi|315416307|gb|ADU12948.1| alanine racemase [Asticcacaulis excentricus CB 48]
          Length = 376

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 196/365 (53%), Gaps = 19/365 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L++DL ALK N+  +  L+     +AVVK +AYGLG + ++  L+  G + FFV    E 
Sbjct: 18  LRVDLGALKANYLKLCQLAAPTPVSAVVKADAYGLGVKAVSATLHAVGCRHFFVALTREA 77

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
            +LR + P  A ++VL G+ PG E    +  LIPV+    QL  ++ +    G + P  L
Sbjct: 78  FELRSHLPTDAALYVLNGLTPGSEARAAEARLIPVLDCPEQLDAWAAVARQRGQTLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           QVDTG +RLG  + E L     +  +  G ++  ++SHLACAD+P++  N  QLE F   
Sbjct: 138 QVDTGMSRLGF-MPEDLKALATAQERLQGLRIDYLMSHLACADEPANPANGQQLEAFEMA 196

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
              +       A+S G+ LG  YH  L RPGI+LYG    +++ +PMQ V+  +  ++  
Sbjct: 197 SRLFPDTPLCFANSGGLFLGAEYHADLCRPGIALYGAAPHLDRPNPMQPVIALDLAVLQT 256

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AG  + YGG         +A  + GYADG P  L              G  + KG 
Sbjct: 257 RTVPAGTRIGYGGTVVTDAPKRLATLSAGYADGLPRRLGD-----------QGAVYFKGT 305

Query: 306 MVPILGKITMDMTMFDITDSL---SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            +P +G+++MD  + DI D+L   +++ GD++++ GP   LD VA A+GT  Y++L ++G
Sbjct: 306 RLPFIGRVSMDSIIIDI-DALPEGTLKTGDFVELIGPHQSLDAVAEAAGTIAYEILTQLG 364

Query: 363 TRYAK 367
            RY +
Sbjct: 365 PRYHR 369


>gi|114569759|ref|YP_756439.1| alanine racemase [Maricaulis maris MCS10]
 gi|114340221|gb|ABI65501.1| alanine racemase [Maricaulis maris MCS10]
          Length = 366

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 190/366 (51%), Gaps = 21/366 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL IDL A+K N+ ++  L+  A   AVVK N YGLG  ++ PAL +AG + F+V    E
Sbjct: 16  RLIIDLAAIKRNYAALQTLAPTASVGAVVKANGYGLGAAQVVPALADAGCRCFYVAHTSE 75

Query: 68  GVKLR--LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
             + R  L    A IFV  G  P +   +   +L PVI+ + QL     L +     P A
Sbjct: 76  AREAREALAGRPADIFVFNGFWPSELAELRQLSLFPVINDLQQL---EDLRALAPDLPCA 132

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +  DTG +RLGL   E      +        +  I+SHLAC+DDP   +N  Q +RF  +
Sbjct: 133 IHFDTGMSRLGLDAAETEALLADPARIDALDVRQIMSHLACSDDPDHPLNEQQRQRFERI 192

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                GI ASL++S+G LLG  YHF + RPG++L+ G     ++ P + VV  +A I+ I
Sbjct: 193 RHALPGIPASLSNSTGTLLGQAYHFDMLRPGLALFSGMPAPGQASPFEPVVAIDAPILQI 252

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ V YG      R   +A  A GYADG                  GG G I   
Sbjct: 253 RTLQPGDTVGYGACWTADRPRRVATVAAGYADGLLRAFGN-----------GGYGRIGET 301

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VPILG+++MD+   DI D++   +  GD ++  GPDI  +++A ++ T +Y+ LVR+G 
Sbjct: 302 QVPILGRVSMDLICVDI-DAVEEPVRPGDPVRFLGPDI--ENMADSAATISYEFLVRLGI 358

Query: 364 RYAKFY 369
           R+ + Y
Sbjct: 359 RFDRSY 364


>gi|222081869|ref|YP_002541234.1| alanine racemase [Agrobacterium radiobacter K84]
 gi|221726548|gb|ACM29637.1| alanine racemase [Agrobacterium radiobacter K84]
          Length = 377

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL+ N+ ++ A    A+ AAVVK +AYGLG +++APALY++G +DFFV    E 
Sbjct: 23  LTIDLVALRRNYETIAAAVAPAKAAAVVKADAYGLGADRVAPALYHSGCRDFFVAQFGEA 82

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH----P 123
            KLR +    ARI+VL G+ PG E     T ++PV++S+ Q   Y +  S  ++     P
Sbjct: 83  EKLRPHLEADARIYVLNGLQPGAEGTCAQTGVVPVLNSMEQ---YKRWRSTALAQNRVLP 139

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            ALQ DTG  RLG+  ++   F     +  + ++  I+SHLA AD+  +  N+ QL   R
Sbjct: 140 AALQFDTGMTRLGIPPEDRAAFAAELTHTDVVEIRFIMSHLASADETDNGQNAQQLAEMR 199

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            + + +     S A+S G+ LG +YH  LTR GI++YGG   ++KS+ +Q V+  +  ++
Sbjct: 200 KIAAEFPQFSVSFANSGGVFLGSDYHGVLTRAGIAVYGGALTVDKSNNIQPVIRLDVAVV 259

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG--F 301
             R    G L+ YGG      +  +A  A GYADG P               LG +G  +
Sbjct: 260 QTRSVPPGTLIGYGGAHAAKVEMRLATLAAGYADGLPRC-------------LGDRGAVY 306

Query: 302 IKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            +G  +PI+G+++MD    D+T     ++ +G  +++ GP   L+D+A ++GT +Y++L 
Sbjct: 307 YEGVRLPIVGRVSMDSITIDVTALPPGTLMLGSLVEVIGPHQTLEDLAKSAGTISYEILT 366

Query: 360 RIGTRYAKFY 369
            +G RY + Y
Sbjct: 367 GLGHRYHRDY 376


>gi|92117813|ref|YP_577542.1| alanine racemase [Nitrobacter hamburgensis X14]
 gi|91800707|gb|ABE63082.1| alanine racemase [Nitrobacter hamburgensis X14]
          Length = 398

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 183/365 (50%), Gaps = 11/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  A VVK +AYG G   +  AL  AG + FFV +++E 
Sbjct: 34  LTVDLDAIVANWRKLEKTAVPAECAGVVKADAYGCGARPVVRALSAAGCRTFFVATLDEA 93

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
              R   P A I+VL GI           N  PVI  + +L  +       G +   A+ 
Sbjct: 94  RVARAAAPSADIYVLDGIFQNCADAFAAINCRPVIGDLNELAEWDVFCRRTGWAGGAAIH 153

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG +L EA            G ++L++SHLACA+  +  +N+ Q+  FR +  
Sbjct: 154 IDTGMNRLGFTLDEAQAILPRIDAGDHG-ITLVMSHLACAETLNHPLNARQVAAFREIAR 212

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASLA+SSGI LGP Y F L RPG++LYG        +PMQ VV  +ARI+  R 
Sbjct: 213 LFSGVPASLANSSGIFLGPQYQFDLVRPGVALYGVNPTPEADNPMQPVVELKARIVQTRT 272

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R + +A+ A GYADGY       D      V       + G   
Sbjct: 273 IDKGESVGYGATWTARRTTRLAIVATGYADGYFRAGGSNDGTRGADV------VVAGTRC 326

Query: 308 PILGKITMDMTMFDITD---SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           P+ G+I+MD+   DITD   +  +  G    + G  I +D++A   GT  Y++L  +G R
Sbjct: 327 PVAGRISMDLLAIDITDLPPNAGVRRGHLATLIGDGITVDELAHHFGTIGYEVLTSLGGR 386

Query: 365 YAKFY 369
           Y + Y
Sbjct: 387 YRRIY 391


>gi|126461891|ref|YP_001043005.1| alanine racemase [Rhodobacter sphaeroides ATCC 17029]
 gi|221638874|ref|YP_002525136.1| Alanine racemase [Rhodobacter sphaeroides KD131]
 gi|226711057|sp|A3PIR7|ALR_RHOS1 RecName: Full=Alanine racemase
 gi|254802372|sp|B9KQC8|ALR_RHOSK RecName: Full=Alanine racemase
 gi|126103555|gb|ABN76233.1| alanine racemase [Rhodobacter sphaeroides ATCC 17029]
 gi|221159655|gb|ACM00635.1| Alanine racemase [Rhodobacter sphaeroides KD131]
          Length = 349

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 199/365 (54%), Gaps = 30/365 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  NW +++ ++  + +T AVVK ++YGLG  K+A AL  AG + FFV + EE
Sbjct: 6   LTIDLDAIAANWRALDQMTASDCQTGAVVKADSYGLGAAKVAHALARAGARRFFVATCEE 65

Query: 68  GVKLRLY---TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           G  +R      PQ  I V  G   G   +I D +L P+++S+ QLT + + +      P+
Sbjct: 66  GADVRRALGSGPQ--ICVFSGHMEGDTALIRDFDLTPMLNSIDQLTRHFEALG---GQPF 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            LQ+D+G NRLGL   E        F  + G   L++SHLAC+DDP   +N+ QL  FR 
Sbjct: 121 GLQLDSGMNRLGLEPGEWEAVA--GFALEAGP-ELLMSHLACSDDPDHPMNAEQLGAFRA 177

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           + +   G+  SL+++ GILLGP +HF+LTRPGI LYGG     ++ P   VV     +I 
Sbjct: 178 M-TDGTGVPRSLSATGGILLGPAWHFELTRPGIGLYGGR-PFEEARP---VVRLSLPVIQ 232

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+   GE V Y         S IA  A GYADG P TLS      S +    G+     
Sbjct: 233 VREVEIGEPVGYSNTWTAEHTSTIATVAAGYADGLPRTLS------SRATLYAGR----- 281

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              P++G+++MD+   D+  S   EV + + I GP    DD+A  +GT  Y++L  +G R
Sbjct: 282 VPCPLVGRVSMDLITVDV--SHLPEVPETLDILGPHQTPDDLADTAGTIGYEILTSLGRR 339

Query: 365 YAKFY 369
           Y + Y
Sbjct: 340 YQRRY 344


>gi|77463017|ref|YP_352521.1| alanine racemase [Rhodobacter sphaeroides 2.4.1]
 gi|123592286|sp|Q3J3L4|ALR_RHOS4 RecName: Full=Alanine racemase
 gi|77387435|gb|ABA78620.1| alanine racemase [Rhodobacter sphaeroides 2.4.1]
          Length = 349

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 198/365 (54%), Gaps = 30/365 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  NW +++ ++  + +T AVVK ++YGLG  K+A AL  AG + FFV + EE
Sbjct: 6   LTIDLDAIAANWRALDQMTASDCQTGAVVKADSYGLGAAKVAHALARAGARRFFVATCEE 65

Query: 68  GVKLRLY---TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           G  +R      PQ  I V  G   G   +I D +L P+++S+ QLT + + +      P+
Sbjct: 66  GADVRRALGSGPQ--ICVFSGHMEGDTALIRDFDLTPMLNSIDQLTRHFEALG---GQPF 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            LQ+D+G NRLGL   E        F  + G   L++SHLAC+DDP   +N+ QL  FR 
Sbjct: 121 GLQLDSGMNRLGLEPGEWEAVA--GFALEAGP-ELLMSHLACSDDPDHPMNAEQLGAFRA 177

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           + +   G+  SL+++ GILLGP +HF+LTRPGI LYGG    N     + VV     +I 
Sbjct: 178 M-TDGTGVPRSLSATGGILLGPAWHFELTRPGIGLYGGRPFENA----RPVVRLSLPVIQ 232

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+   GE V Y         S IA  A GYADG P TLS      S +    G+     
Sbjct: 233 VREVEIGEPVGYSNTWTAEHTSTIATVAAGYADGLPRTLS------SRATLYAGR----- 281

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              P++G+++MD+   D+  S   EV + + I GP    DD+A  +GT  Y++L  +G R
Sbjct: 282 VPCPLVGRVSMDLITVDV--SHLPEVPETLDILGPHQTPDDLADTAGTIGYEILTSLGRR 339

Query: 365 YAKFY 369
           Y + Y
Sbjct: 340 YQRRY 344


>gi|149184540|ref|ZP_01862858.1| alanine racemase [Erythrobacter sp. SD-21]
 gi|148831860|gb|EDL50293.1| alanine racemase [Erythrobacter sp. SD-21]
          Length = 345

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 197/363 (54%), Gaps = 28/363 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +D  AL  NW +++ +SG+AR  A VK + YGLG E   P L +AG  DFFV    
Sbjct: 9   LRLDLDREALAANWRALDRMSGSARAGAAVKADCYGLGVEHCVPVLRDAGCGDFFVAHWS 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   +  +   A++ VL+G   G E     +T  +PVI SV Q    +KL +     P  
Sbjct: 69  EVAAVVEHVDAAQVAVLHGPLDGNEVAYARETGALPVIDSVRQ----AKLWAESGGGPCH 124

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VD+G NRLG+S QE      N   + L  + +++SHLACAD+  S +N+ QLE FR  
Sbjct: 125 LMVDSGINRLGISPQE----ISNPVVQAL-DVQVLLSHLACADE-DSPMNARQLETFRDA 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
           I   +  E SLA+S+GI LG +YHF LTRPG++LYGG  +   +  +  VV  +A II  
Sbjct: 179 IQRVEHCETSLANSAGIALGSDYHFDLTRPGLALYGGVPRPELADHIGQVVFPKAAIIQT 238

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AG+ V Y        +  + V ++GYADG   +              GG  F  G 
Sbjct: 239 RQLSAGDGVGYNATFTAPVEMRVGVLSLGYADGILRS-------------WGGAAFRSGE 285

Query: 306 -MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             +PILGK++MDM + D++D+  +  GD++++      L D A  +  T Y+LL  +G R
Sbjct: 286 KRLPILGKVSMDMIVIDLSDAPELGEGDWVEL---PYHLPDAAQQTSLTQYELLTVLGNR 342

Query: 365 YAK 367
           +A+
Sbjct: 343 FAR 345


>gi|192291866|ref|YP_001992471.1| alanine racemase [Rhodopseudomonas palustris TIE-1]
 gi|192285615|gb|ACF01996.1| alanine racemase [Rhodopseudomonas palustris TIE-1]
          Length = 413

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 181/364 (49%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  +  A VVK +AYG G   +  AL  AG + FFV ++ E 
Sbjct: 36  LTIDLDALVANWRKLEKTAIPSECAGVVKGDAYGCGAGPVTKALLAAGCKTFFVATLSEA 95

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
             +R   P A ++VL G  P         N  PVI  + +L  +       G     AL 
Sbjct: 96  RVVREAAPNATLYVLDGFFPNSGDEFAKLNCQPVIGDLYELAEWDVFCRRTGWRGGAALH 155

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLGL++ EA            G ++L+ISHLACAD  +  +N+ Q   FR +  
Sbjct: 156 IDTGMSRLGLTIVEAQGIVPRIVAGDHG-ITLVISHLACADLVNHQLNAKQAAAFREIAG 214

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSGI LGP + F L RPG +LYG        +PMQ VV  +ARI+ +R 
Sbjct: 215 QFTGVSASLSASSGIFLGPQFAFDLVRPGAALYGINPTPEADNPMQPVVDLKARIVQVRS 274

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YG      R S IAV + GYADGY       D      V       I G   
Sbjct: 275 VERGDTVGYGATWSARRPSKIAVVSAGYADGYFRAAGSSDGTRGADV------IIAGQRC 328

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI G+I+MD+   DITD  + +   G    + G  I +D++    GT  Y++L  +G RY
Sbjct: 329 PIAGRISMDLLAVDITDLPANAARRGMMATLIGDGITVDELGHHFGTIGYEVLTSLGRRY 388

Query: 366 AKFY 369
            + Y
Sbjct: 389 TRIY 392


>gi|254449940|ref|ZP_05063377.1| alanine racemase [Octadecabacter antarcticus 238]
 gi|198264346|gb|EDY88616.1| alanine racemase [Octadecabacter antarcticus 238]
          Length = 345

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 192/363 (52%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL  NW S++A++ +  T AVVK + YGLG  K+  AL  AGV+ FFV   EEG
Sbjct: 6   LSVDLDALTANWRSLDAMT-DVETCAVVKADGYGLGVAKVGRALMKAGVKRFFVAVPEEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR    P   I +  G   G   +I D  L P+I+++ QLT + + +     HP+ +Q
Sbjct: 65  AILRHAVGPNVEICIFAGHMRGDTDMIADMMLTPMINTIGQLTRHLEALP---DHPFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL + E       +  +      L++SHLACAD P   +N  QL++F  L++
Sbjct: 122 LDTGMNRLGLEIDEWASIAEIALTQNC---RLVMSHLACADTPDHPMNRKQLDQFH-LMT 177

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GILLGP YHF +TRPGI LYGG      + P   V   +  +I +R 
Sbjct: 178 DGINVPRSLAATGGILLGPEYHFDMTRPGIGLYGGA-PFADALP---VAYLDLPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y       R S IA  + GYADG    LS            G   +     V
Sbjct: 234 VEIGETVGYANAWTAQRPSKIATLSGGYADGLTRALSA-----------GANLWHGAQPV 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+++MD+   D+TD    E+   + + G D  +D++A  +GT  Y++L  +G RY +
Sbjct: 283 PLVGRVSMDLITADVTD--LPELPGVLSVLGLDQTVDELAARAGTIGYEILTSLGPRYER 340

Query: 368 FYT 370
            Y+
Sbjct: 341 RYS 343


>gi|149913818|ref|ZP_01902350.1| alanine racemase [Roseobacter sp. AzwK-3b]
 gi|149812102|gb|EDM71933.1| alanine racemase [Roseobacter sp. AzwK-3b]
          Length = 346

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 197/364 (54%), Gaps = 30/364 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A++ NW +++AL G ++TAAVVK +AYGL   ++AP L  AG + FFV   EEG
Sbjct: 6   LTIDLDAIRANWRALDAL-GTSQTAAVVKADAYGLDAGRVAPVLAAAGARSFFVAVAEEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR +  P   I V  G   G  ++I    LIP+++SV Q+  +++ +     H + +Q
Sbjct: 65  AALRKVLGPDVAIHVFSGHMAGDAELIGGAGLIPMLNSVDQMIRHAEALP---GHAFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G NRLG+   E       + ++     +L++SHLACAD+P   +N  QL+ FR +  
Sbjct: 122 LDSGMNRLGMEPSEWAAVRDVALSQS---PTLVMSHLACADEPDHPMNLQQLQAFREMT- 177

Query: 188 HYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
              G+ A   LA++ GIL+GP YHF LTRPGI LYGG      + P   VVT +  +I  
Sbjct: 178 --DGVTAPLCLANTGGILMGPEYHFDLTRPGIGLYGGR-PFEGARP---VVTLDIPVIQC 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R     E V Y      TR + IA    GYADG    +        P   +       G 
Sbjct: 232 RDLTPRETVGYANSFTATRPTRIATIGAGYADGIIRAM-------GPRSHV----LADGV 280

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             PI G+I+MD+   DITD L  +  +++Q+ GP   +DD+A  +GT  Y++L  +G RY
Sbjct: 281 PCPIAGRISMDLIGVDITD-LGHDP-EHLQLLGPTQTVDDLADNAGTIGYEILTSLGARY 338

Query: 366 AKFY 369
            + Y
Sbjct: 339 VRRY 342


>gi|209546891|ref|YP_002278809.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538135|gb|ACI58069.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 377

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 190/370 (51%), Gaps = 25/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK NAYGLG E++A  LY  G + FFV    E 
Sbjct: 23  LTIDLAALGRNYRKLVSMLAPVRAGAVVKANAYGLGAERVATTLYGEGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHP 123
           V+LR      A+IFVL G+ PG E    +  ++PV++S+ Q   +S     L  C    P
Sbjct: 83  VRLRPTLARDAQIFVLNGLQPGNEIACAERGIVPVLNSLTQWRQWSATARMLKRC---LP 139

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             LQ DTG +RLG   +E  +      +    ++  I+SHLA ADD  S  N  QL    
Sbjct: 140 AVLQFDTGMSRLGFPEEERSELAAALGDGSNVEILFIMSHLASADDMESDQNGEQLAEMA 199

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            +   + G + S A+S G+ LG  YH  L RPGI+LYGG      ++PM+ VV+ +  ++
Sbjct: 200 RIADEFPGFDISFANSGGVFLGDAYHGVLARPGIALYGGAPHAGGNNPMEPVVSLDVAVV 259

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG--F 301
             R   AG  V YGG     R   +A  A GYADG P +             LG +G  +
Sbjct: 260 QTRTVPAGAKVGYGGAHVTQRKMRLATIAAGYADGLPRS-------------LGDRGAVY 306

Query: 302 IKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
                +PI+G+++MD    D++     ++ +G  +++ G +  L+ +A  +GT +Y++L 
Sbjct: 307 YNDIRLPIVGRVSMDSATVDVSALPEGALTLGSLVEVLGSNQTLEHIARDAGTISYEILT 366

Query: 360 RIGTRYAKFY 369
            +G RY K Y
Sbjct: 367 GLGDRYDKQY 376


>gi|209964879|ref|YP_002297794.1| alanine racemase [Rhodospirillum centenum SW]
 gi|209958345|gb|ACI98981.1| alanine racemase [Rhodospirillum centenum SW]
          Length = 384

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 192/370 (51%), Gaps = 20/370 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  + A    A   AVVK +AYGLG   +A  L   G   FFV   E G
Sbjct: 20  LVIDLGALAANWRDLAARVAPAECGAVVKADAYGLGAGPVARRLLAEGAHTFFVADTEAG 79

Query: 69  VKLR----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123
           + LR       P+ RI VL+G+ PG    +    L+P ++++  L  + ++    G   P
Sbjct: 80  MALRTVLPAMQPEPRIVVLHGVPPGAAPDLAAARLLPALNTLGDLERWRAEGQRRGAPLP 139

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG--QLSLIISHLACADDPSSHVNSVQLER 181
             + +DTG NRLGL+  E LD      ++ L   ++   +SHLACAD P+  +   QL R
Sbjct: 140 CFVHIDTGMNRLGLTAAE-LDTLAGDADRLLAGVRVESWMSHLACADHPADPMTKTQLGR 198

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           FR  ++      ASLA+S+GI  G +YHF L RPGI+LYG        +PM+ VV   AR
Sbjct: 199 FRAALARLPAARASLANSAGIFHGRDYHFDLVRPGIALYGPNPAPWTENPMRPVVRVFAR 258

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I  +R   AG+ V Y    ++ R   IA   +GYADGYP  LSG           G   F
Sbjct: 259 IHQVRPVSAGDTVGYDATHRIGRPGRIAALGMGYADGYPWALSG----------RGAALF 308

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
              Y  P++G+++MD+   D+TD     +  G + ++ GP   +D  A  +GT  Y++L 
Sbjct: 309 GGAYRAPLVGRVSMDLLTADVTDVPEQFLAEGGWAEVIGPHRPVDTAATEAGTIGYEVLT 368

Query: 360 RIGTRYAKFY 369
           R+G+RY + +
Sbjct: 369 RLGSRYHRVH 378


>gi|316933684|ref|YP_004108666.1| alanine racemase [Rhodopseudomonas palustris DX-1]
 gi|315601398|gb|ADU43933.1| alanine racemase [Rhodopseudomonas palustris DX-1]
          Length = 415

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 183/364 (50%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  +  A VVK +AYG G   +  AL  AG + FFV ++ E 
Sbjct: 36  LTIDLDALVANWRKLEKTAVPSECAGVVKGDAYGCGAGPVVKALLGAGCKTFFVATLGEA 95

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
             +R   P+A ++VL G  P         N  PVI  + +L  +       G     AL 
Sbjct: 96  RAVREVAPEATLYVLDGFFPYSGDEFARLNCQPVIGDLYELAEWDVFCRRTGWRGGAALH 155

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLGL++ EA            G ++L++SHLACAD  +  +N+ Q+  FR +  
Sbjct: 156 IDTGMSRLGLTITEAQGIVPRIVAGDHG-ITLVMSHLACADLVNHPLNARQVTAFREIAG 214

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSGI LGP + F L RPG +LYG        +PMQ VV  +ARI+ +R 
Sbjct: 215 QFTGVSASLSASSGIFLGPQFAFDLVRPGAALYGINPTPEADNPMQPVVDLKARIVQVRS 274

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YG      R S IAV + GYADGY       D      V       I G   
Sbjct: 275 VERGDTVGYGATWSARRPSKIAVLSAGYADGYFRAAGSSDGTRGAEV------IIAGERC 328

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI G+I+MD+   D+TD  + +   G    + G  I +D++    GT  Y++L  +G RY
Sbjct: 329 PIAGRISMDLLAVDVTDLPANAARRGMMATLIGDGITVDELGHHFGTIGYEVLTSLGPRY 388

Query: 366 AKFY 369
            + Y
Sbjct: 389 TRIY 392


>gi|241113131|ref|YP_002972966.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861339|gb|ACS59005.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 377

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 191/370 (51%), Gaps = 25/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++  + R  AVVK +AYGLG E++   LY+ G + FFV    E 
Sbjct: 23  LTIDLAALGRNYRKLVSMLASVRAGAVVKADAYGLGAERVGRTLYSEGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHP 123
           ++LR      A+IFVL G+ PG E    +  ++PV++S+ Q   +S     L  C    P
Sbjct: 83  LRLRPALAHDAQIFVLNGLQPGNEIACAEMGVVPVLNSLAQWRQWSTAARILKRC---LP 139

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             LQ DTG +RLG   +E  +           ++  I+SHLA ADD  S  N  Q+    
Sbjct: 140 AVLQFDTGMSRLGFPEEERAELAAALSGSTNVEILFIMSHLASADDMDSDQNGEQIAEMS 199

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            +   + G + S A+S G+ LG  YH  L RPGI+LYGG     + +PM+ VV+    ++
Sbjct: 200 RIADEFPGFDISFANSGGVFLGDPYHGVLARPGIALYGGAPNAGEKNPMEPVVSLNVAVV 259

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG--F 301
             R   AG  V YGG     R++ +A  A GYADG P               LG +G  +
Sbjct: 260 QTRTVPAGAKVGYGGAHVTQRETRLATIAAGYADGLPRC-------------LGDRGAVY 306

Query: 302 IKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            KG  +PI+G+++MD    DI+     ++  G  +++ G    L+D+A  +GT +Y++L 
Sbjct: 307 FKGIRLPIVGRVSMDSATVDISALPEGALTFGSLVEVLGRHQTLEDIACDAGTISYEILT 366

Query: 360 RIGTRYAKFY 369
            +G RY + Y
Sbjct: 367 GLGDRYDRQY 376


>gi|146277115|ref|YP_001167274.1| alanine racemase [Rhodobacter sphaeroides ATCC 17025]
 gi|226711058|sp|A4WRF5|ALR_RHOS5 RecName: Full=Alanine racemase
 gi|145555356|gb|ABP69969.1| alanine racemase [Rhodobacter sphaeroides ATCC 17025]
          Length = 349

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 196/365 (53%), Gaps = 30/365 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  NW +++ ++  + +T AVVK +AYGLG  K+A AL  AG + FFV + EE
Sbjct: 6   LTIDLDAIAANWRALDQMTASDCQTGAVVKADAYGLGAAKVAHALARAGARRFFVAACEE 65

Query: 68  GVKLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           G ++R      PQ  I V  G   G   +I D +L P+++S+ QLT + + +      P+
Sbjct: 66  GAEVRRALGSGPQ--ICVFSGHMEGDTALIRDFDLTPMLNSIEQLTRHFETLG---GQPF 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            LQ+D+G NRLGL   E       +         L++SHLACAD+P   +N+ QL  FR 
Sbjct: 121 GLQLDSGMNRLGLEPGEWEAVAATALEAGP---ELLMSHLACADEPDHPMNTEQLRAFRA 177

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           + +   G+  SL+++ GILLGP +HF+LTRPGI LYGG     ++ P   VV     ++ 
Sbjct: 178 M-TDGTGVPRSLSATGGILLGPAWHFELTRPGIGLYGGR-PFEEARP---VVHLSLPVVQ 232

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+   GE V Y         S IA  A GYADG P TLS      S +    G+     
Sbjct: 233 VREVEIGEPVGYSNSWTAEHTSTIATVAAGYADGLPRTLS------SRASLFAGR----- 281

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              P++G+++MD+   D+  S   EV D + I       DD+A  +GT  Y++L  +G R
Sbjct: 282 VPCPLVGRVSMDLITVDV--SHLPEVPDALDILCRHQTPDDLADTAGTIGYEILTSLGRR 339

Query: 365 YAKFY 369
           Y + Y
Sbjct: 340 YQRRY 344


>gi|39936148|ref|NP_948424.1| alanine racemase [Rhodopseudomonas palustris CGA009]
 gi|39650003|emb|CAE28526.1| putative alanine racemase [Rhodopseudomonas palustris CGA009]
          Length = 413

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 181/364 (49%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  +  A VVK +AYG G   +  AL  AG + FFV ++ E 
Sbjct: 36  LTIDLDALVANWRKLEKTAIPSECAGVVKGDAYGCGAGPVTKALLAAGCKTFFVATLSEA 95

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
           + +R   P A ++VL G  P         N  PVI  + +L  +       G     AL 
Sbjct: 96  LVVREAAPNATLYVLDGFFPNSGDEFAKLNCQPVIGDLYELAEWDVFCRRTGWRGGAALH 155

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLGL++ EA            G ++L+ISHLACAD  +  +N+ Q   FR +  
Sbjct: 156 IDTGMSRLGLTIVEAQGIVPRIVAGDHG-ITLVISHLACADLVNHQLNAKQAAAFREIAG 214

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSGI LG  + F L RPG +LYG        +PMQ VV  +ARI+ +R 
Sbjct: 215 QFTGVSASLSASSGIFLGSQFAFDLVRPGAALYGINPTPEADNPMQPVVDLKARIVQVRS 274

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YG      R S IAV + GYADGY       D      V       I G   
Sbjct: 275 VERGDTVGYGATWSARRPSKIAVVSAGYADGYFRAAGSSDGTRGADV------IIAGQRC 328

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI G+I+MD+   DITD  + +   G    + G  I +D++    GT  Y++L  +G RY
Sbjct: 329 PIAGRISMDLLAVDITDLPANAARRGMMATLIGDGITVDELGHHFGTIGYEVLTSLGRRY 388

Query: 366 AKFY 369
            + Y
Sbjct: 389 TRIY 392


>gi|90419483|ref|ZP_01227393.1| putative alanine racemase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336420|gb|EAS50161.1| putative alanine racemase [Aurantimonas manganoxydans SI85-9A1]
          Length = 384

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 208/381 (54%), Gaps = 16/381 (4%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           HS     ++ID  AL  NW  + A +  ART A VK + YGLG  + A  L+ AG +DFF
Sbjct: 6   HSERMPVVEIDRAALAANWALLAARNPGARTGAAVKADGYGLGAAETARTLHAAGCRDFF 65

Query: 62  VTSVEEGVKLRLY----------TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF 111
           V   EEG  +R            T  ARIFVL G+ P    +  D  LIPV+S+   +  
Sbjct: 66  VAWAEEGRIVRAALDALTHPDDGTAPARIFVLQGLEPDSVSLHLDAGLIPVLSTPGDIAV 125

Query: 112 YSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
           +   L + G   P A+Q++TG +RLGL   +A      + + +L  L+L++SHLA AD+P
Sbjct: 126 WCNGLKAAGRRAPAAIQLETGMHRLGLDRADAEAAADLAASGEL-DLALVMSHLASADEP 184

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           +   ++ Q  RF  L + + G+  SLA+S+ + LG  + F LTRPGI+LYGG        
Sbjct: 185 TDQ-SARQQARFLELAALFPGVPRSLANSAAVFLGSEFGFDLTRPGIALYGGEAGPASRG 243

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V    A I+ IR A AGE   YG    LTRD+ IA   +GYADGY    SG     
Sbjct: 244 VLRPVARLTAAILQIRTANAGEAAGYGAAAPLTRDTRIATVGLGYADGYHRAASGAGVAV 303

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVAL 348
              V  G +  + G  VP+LG+++MD+T+ D+TD    ++  GD  + FGP++ +D VA 
Sbjct: 304 R-DVRPGPQAVVAGQRVPVLGRVSMDLTLLDVTDVPDNALVPGDRAEFFGPNMSIDAVAN 362

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A+GT  Y+LL  +G R  + +
Sbjct: 363 AAGTIAYELLTGLGPRVERRW 383


>gi|254460815|ref|ZP_05074231.1| alanine racemase [Rhodobacterales bacterium HTCC2083]
 gi|206677404|gb|EDZ41891.1| alanine racemase [Rhodobacteraceae bacterium HTCC2083]
          Length = 344

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 192/369 (52%), Gaps = 40/369 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW +++  S  A T AVVK +AYG G  + A  L   G + FFV   EE 
Sbjct: 6   LSIDLAAIAANWSALDRFS-TAETGAVVKADAYGTGIGRAARRLAQTGARKFFVAVAEEA 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R    P   I++L G   G   +I D +LIP++SS+ Q+  + + +      P+ +Q
Sbjct: 65  ADIRQAIGPDPEIYILSGHMSGDTDMIADLHLIPLLSSIDQMLRHFEALP---GTPFGIQ 121

Query: 128 VDTGFNRLGLSLQE-----ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +DTG NRLG+   E     +L    N          LI+SHLACADDPS  +N+ QL  F
Sbjct: 122 LDTGMNRLGMEAGEWEAVKSLVLPQNPM--------LIMSHLACADDPSHPMNAQQLAAF 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
              I    GI+A  SLA++ GILLGP YHF +TRPGI LYGG    + +     VV+   
Sbjct: 174 ---IEMTDGIDAPRSLAATGGILLGPEYHFDVTRPGIGLYGGLPFADAT----PVVSLSL 226

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II  R  LAGE V YG      RDS I   + GYADG  L + G  +            
Sbjct: 227 PIIQTRDVLAGESVGYGNTWIAERDSRIVTVSCGYADGI-LRVMGPKTHF---------- 275

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           F  G  VP+ G+I+MD    D+TD   +     +++ GP   ++ +A  +GT  Y++L  
Sbjct: 276 FANGTAVPVAGRISMDSICIDVTDVSDLP--SALELLGPQQSIETLAQNAGTIGYEILTS 333

Query: 361 IGTRYAKFY 369
           +G RY++ Y
Sbjct: 334 LGARYSRRY 342


>gi|84502660|ref|ZP_01000779.1| alanine racemase [Oceanicola batsensis HTCC2597]
 gi|84389055|gb|EAQ01853.1| alanine racemase [Oceanicola batsensis HTCC2597]
          Length = 343

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 191/363 (52%), Gaps = 25/363 (6%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + +DL AL  NW +++A S     T AV+K N YGLG + +A AL  AGV+ FFV   EE
Sbjct: 1   MTVDLDALVANWRALDAASSPETETGAVIKANGYGLGVQPVARALARAGVRRFFVAVAEE 60

Query: 68  GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G  +R    P   I V  G   G   +I D NLIP+++SV Q+  + + +     HP  +
Sbjct: 61  GAAVREAVGPNVEINVFSGHMRGDTDMIGDLNLIPMLNSVDQMLRHVEALP---GHPLGI 117

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLG+  +E +     + +      +LI+SHLACAD+P   +N  QL +F+ + 
Sbjct: 118 QLDTGMNRLGMEPEEWMAVRETALDLSP---NLIMSHLACADEPDHPMNIRQLRQFKAMT 174

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           S   G+  SLA++ GILLGP YHF +TRPG+ L+GG    +     + VV  +  +I IR
Sbjct: 175 SGLGGVPLSLAATGGILLGPEYHFDVTRPGVGLFGGLPFADA----EPVVRLDLPVIQIR 230

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +  AGE V YG        ++IA  A GYAD       G+     P   L    +     
Sbjct: 231 ELEAGETVGYGNTWTAPDRTVIATVAAGYAD-------GIHRLMGPRTSL----YAGDTP 279

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P+ G+I+MD+   DIT       G  + + GP   +D +A  + T  Y++L  +G R +
Sbjct: 280 CPVRGRISMDLIGVDITHLTEEPQG--LTLLGPQQTVDVIAENAQTIGYEVLTSLGGRMS 337

Query: 367 KFY 369
           + Y
Sbjct: 338 RRY 340


>gi|163746601|ref|ZP_02153959.1| alanine racemase [Oceanibulbus indolifex HEL-45]
 gi|161380486|gb|EDQ04897.1| alanine racemase [Oceanibulbus indolifex HEL-45]
          Length = 347

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 202/366 (55%), Gaps = 31/366 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+ NNW +++ L+  A T AVVK ++YGLG E++A AL  AG + FFV   EEG
Sbjct: 6   LTIDLQAIANNWRALDRLT-KAETGAVVKADSYGLGAERVANALAQAGARQFFVALAEEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR     +  I V  G   G  + I D  L P+I+S  QL    + +     HP+ +Q
Sbjct: 65  AALRQALGDRPVINVFSGHMAGDAEAIRDAALTPMINSTEQLL---RQLETLPGHPFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G NRLG+   E       + ++    L+LI+SHLAC+D P   +N+ QL  F  +  
Sbjct: 122 LDSGMNRLGMEPAEWAALRDIAQSQP---LTLIMSHLACSDAPDHEMNAAQLRSFHDMT- 177

Query: 188 HYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
             +GI+   SL+++ GILLG +YHF +TRPGI LYGG    + + P   VVT +  +I  
Sbjct: 178 --QGIDVARSLSATGGILLGSDYHFDVTRPGIGLYGGR-PFDDAQP---VVTLDVPVIQT 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVA--AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           R    GE V YG     T D+++ +A  A GYADG    L     E   + F        
Sbjct: 232 RTVTPGETVGYG--NSWTADTMVTLATVAAGYADGLKRALGNAVGE---ACFQH-----D 281

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  +PI+G+++MD+   DI+ +LS +V   +Q+ GP   +DD+A  +GT  Y++L  +G 
Sbjct: 282 GKTLPIVGRVSMDLITVDIS-ALS-DVPQTLQLIGPGQGVDDLADWAGTIGYEILTSLGA 339

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 340 RYDRHY 345


>gi|182680013|ref|YP_001834159.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635896|gb|ACB96670.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 373

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 197/371 (53%), Gaps = 25/371 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW ++ A+SG     AVVK +AYGLG   +  ALY AG + FFV    EG
Sbjct: 15  LTIDLAAIVANWQTLQAVSGT-ECGAVVKADAYGLGLHPVVKALYEAGCRTFFVAHAFEG 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--- 125
            ++R   P+A I+VL G+ P QE      NL PV++SVP++  + +   C  SH  A   
Sbjct: 74  AEVRALAPEAIIYVLNGVRPAQEYTFAAHNLRPVLNSVPEVEDWGQY--CATSHKRAPDG 131

Query: 126 ------LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 L++DTG N+LGL L +     H S    L  ++L++S L  ADD    +   Q+
Sbjct: 132 SLLKAGLRIDTGVNQLGLKLYDLERVDHLS---PLFDVTLLLSQLVTADD---SIADRQI 185

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           E F  + + Y G+ ASLA+S+ I L  N   + L RPG +LYGG     + +PM+ VV  
Sbjct: 186 EAFDKIRARYPGVPASLANSAAIFLDNNPPLYDLVRPGYALYGGNPVPGRPNPMRPVVRL 245

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A II +R    G  V      K      + + A G ADG P  L+  D+E      +GG
Sbjct: 246 DAHIIQVRVLEPGHSVGVERLWKARGPRRVIMVAAGLADGIPSGLT--DNEK----HVGG 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           K  I+G + P +  I MD ++ D++D+  +E G+ +++ G  + +DD A  +  + Y++L
Sbjct: 300 KALIQGTLCPYVSDIAMDYSVIDVSDATYLERGEMVELLGKTVTIDDFAAMANVSGYEIL 359

Query: 359 VRIGTRYAKFY 369
             +G R  + Y
Sbjct: 360 SNLGRRCHRRY 370


>gi|329890148|ref|ZP_08268491.1| alanine racemase [Brevundimonas diminuta ATCC 11568]
 gi|328845449|gb|EGF95013.1| alanine racemase [Brevundimonas diminuta ATCC 11568]
          Length = 361

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 190/364 (52%), Gaps = 30/364 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL  N+ ++ A+SG A    VVK + YGLG   +   L   G + FFV    EG
Sbjct: 23  LNVDLDALARNYRTLGAVSG-APVNPVVKADGYGLGAAAVTQRLMAEGARTFFVARAAEG 81

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYA 125
           V+LR    P+  I++L G H     ++  +NL PVI+   QL  +      +CG      
Sbjct: 82  VRLREAIGPEPVIYILDGCHGDGAAMLKASNLRPVINHPTQLQTWQAAGGGACG------ 135

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           LQ+DTG NRLG  +++A         +    L L+++HLACAD+PS+ +N  Q + +   
Sbjct: 136 LQIDTGMNRLGFRVEDA--------PEPFEGLQLVMTHLACADEPSNPMNRAQRDAYAAA 187

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
           ++ Y  +  S A+S G  LGP++ F + RPGI LYGG  +      +  V +  A+ + +
Sbjct: 188 VTRYPSVTRSFANSGGCFLGPDFAFDVVRPGICLYGGGPEGRPHDRITPVASLIAQAVQV 247

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE V Y    +  R   +A    GYAD       G+   + P     G+ FI G 
Sbjct: 248 RDVPAGETVGYSQGYRAERPMRVATVGAGYAD-------GVLRSYGPR----GQVFIAGE 296

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           M PI+G+++MD+   D+T  L +  GD ++IFG +  +DD A A+GT +Y+LL  I  R 
Sbjct: 297 MRPIIGRVSMDVLAVDVT-GLDVTAGDPVEIFGANRLVDDAAAAAGTISYELLTSITPRV 355

Query: 366 AKFY 369
            + Y
Sbjct: 356 PRVY 359


>gi|329850902|ref|ZP_08265747.1| alanine racemase [Asticcacaulis biprosthecum C19]
 gi|328841217|gb|EGF90788.1| alanine racemase [Asticcacaulis biprosthecum C19]
          Length = 350

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 193/373 (51%), Gaps = 26/373 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M ++   RL +DL AL  N+ S+   +G A  A VVK +AYGLG   +A  L   G + F
Sbjct: 1   MSASSTARLNVDLAALSQNYASLKRAAGAAEVAPVVKADAYGLGMAGVAAHLARQGAKTF 60

Query: 61  FVTSVEEGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           FV  + EG+ LR L      I+VL G+            L PVI++  Q   + +  S  
Sbjct: 61  FVARLAEGLALRTLVGNDPVIYVLDGLT--DPSAFAAQRLRPVINTPDQYQLWLQGPSEV 118

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           V+   AL +DTG NRLG+   +  D      +     L+L++SHLAC D+P   +N  QL
Sbjct: 119 VA---ALHIDTGMNRLGVRPDQIADLPAARHHG----LALVMSHLACGDEPGHPMNYQQL 171

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             FR    H+ G+  SL++SSG+ LGP+Y F L RPGI LYGG         +Q V    
Sbjct: 172 MAFRAATDHFPGVARSLSNSSGLYLGPDYGFDLVRPGICLYGGGPFGTAHADIQPVAHLS 231

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARI+ IR+   GE V YG      RD  +A   +GYADG   +L+ L             
Sbjct: 232 ARILQIRELKVGESVGYGASFVADRDMTLATIGLGYADGLMRSLAPL------------- 278

Query: 300 GF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           GF  ++G   P+ G+++MD+   D+T  L +    +++I G    LD VA A+GT  Y++
Sbjct: 279 GFVTVQGERRPLTGRVSMDVFTVDVT-GLHVSDRTWVEILGSSQNLDAVATAAGTIGYEV 337

Query: 358 LVRIGTRYAKFYT 370
           L R+GTR  + YT
Sbjct: 338 LTRLGTRVPRHYT 350


>gi|126735551|ref|ZP_01751296.1| alanine racemase [Roseobacter sp. CCS2]
 gi|126714738|gb|EBA11604.1| alanine racemase [Roseobacter sp. CCS2]
          Length = 345

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 200/362 (55%), Gaps = 30/362 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW +++A++ + +TAAVVK N YGLG   +A AL+ AGV+ FFV   EE 
Sbjct: 6   LIIDLDAVVANWRALDAMT-DCKTAAVVKANGYGLGAANVAKALFKAGVRQFFVAVAEEA 64

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R    P+  I V  G   G   II +  L P+++SV QLT + + +     HP+ +Q
Sbjct: 65  AAIREELGPKPEISVFSGHMAGDTDIIRELGLTPMLNSVEQLTHHLETLP---GHPFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+ +QE       +  +K     L++SHLACAD+P   +N  QL +F+ +  
Sbjct: 122 LDTGMNRLGMEMQEWAAVAELALAQKP---RLVMSHLACADEPDHPMNPYQLAQFKKMTD 178

Query: 188 HYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
              GI A  SLA++ GILLGP YHF LTRPGI LYGG      S     V+  +  +I +
Sbjct: 179 ---GITAPRSLAATGGILLGPEYHFDLTRPGIGLYGGLPFAQAS----PVIELDLPVIQV 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE+V YG   + TR S IA  + GYADG    LS        +++ G        
Sbjct: 232 RDVAEGEVVGYGNVWQATRASRIATVSAGYADGIARILS-----DKATLYHGDTP----- 281

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++ +++MD+   D+TD    E    + + GP   +DD+A A+ T  Y++L ++G RY
Sbjct: 282 -CPLVSRVSMDLLTIDVTD--LTETPKKLTLIGPHQGVDDLAQAANTIGYEVLTQLGDRY 338

Query: 366 AK 367
            +
Sbjct: 339 NR 340


>gi|119386397|ref|YP_917452.1| alanine racemase [Paracoccus denitrificans PD1222]
 gi|119376992|gb|ABL71756.1| alanine racemase [Paracoccus denitrificans PD1222]
          Length = 365

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 197/362 (54%), Gaps = 27/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ID+ A+  NW ++ A +  AR AAVVK +AYGLG +++AP LY AG +DFFV    EG
Sbjct: 29  LVIDIPAIVANWKALAARAPGARAAAVVKADAYGLGADRVAPPLYAAGARDFFVALASEG 88

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R   P  ARIFVL G   G +       L+P+++S  Q      L   G   P+ +Q
Sbjct: 89  RAIRPLLPDDARIFVLSGHMEGADL----AGLVPLLNSPEQFFRDRALRPRG---PFGIQ 141

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G NRLG+   E  ++          + +LI+SHLACAD+P    N+ QL  FR +  
Sbjct: 142 LDSGMNRLGI---EPGEWAAIRAEALAARPALIMSHLACADEPDHPANAQQLAAFRAMTE 198

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GILLGP+YHF L RPGI LYGG +    + P   VVT    +I +R+
Sbjct: 199 GVT-VPRSLAATGGILLGPDYHFDLVRPGIGLYGG-EPFADARP---VVTLALPVIQVRE 253

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R S +A  A GYADG    L+    +   +++ G +G      V
Sbjct: 254 VKPGESVGYGYAWTAARPSRVATVAAGYADGLARALA---RDGKLTLWAGERG------V 304

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+I+MD+   D+TD   +     ++I      +DD+A  SGT  Y++L  +G RY +
Sbjct: 305 PVIGRISMDLITVDVTDLPDVPAA--LEILNARQGVDDLAALSGTIGYEILTSLGRRYER 362

Query: 368 FY 369
            +
Sbjct: 363 TW 364


>gi|114766132|ref|ZP_01445136.1| alanine racemase [Pelagibaca bermudensis HTCC2601]
 gi|114541592|gb|EAU44634.1| alanine racemase [Roseovarius sp. HTCC2601]
          Length = 345

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 30/366 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +L IDL A++ NW ++  L+      AVVK +AYGLG +K+AP L +AG + FFV    E
Sbjct: 5   QLSIDLAAIRANWRALADLT-TGEAGAVVKADAYGLGVDKVAPVLADAGAKRFFVAIASE 63

Query: 68  GVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           GV LR    +   I V  G   G  + +   NL+P+I+S+ Q+  + + +     HP+ +
Sbjct: 64  GVTLRRVLGEGPEICVFSGHMKGDAEALRAANLVPMINSIDQMLRHVEALP---GHPFGI 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G NRLG+   E       +  +K     L++SHLACAD+P   +N++QL  FR + 
Sbjct: 121 QLDSGMNRLGMEPSEWAALREIALAQKP---RLVMSHLACADEPEHGMNALQLRTFREMT 177

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                   SL+++ GIL+GP+YHF+LTRPGI +YGG    + +     VV     +I  R
Sbjct: 178 DDIDAPR-SLSATGGILMGPDYHFELTRPGIGIYGGLPFADAT----PVVELMLPVIQTR 232

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG-- 304
           +   GE V YG        + +A  A GYADG    L+              KG++    
Sbjct: 233 EVTPGESVGYGNAWVARVPTKVATIAAGYADGIHRALA-------------KKGYVWAGN 279

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
               ILG+++MD+   D+T +L  EV + +++ G    +D VA A GT  Y++L  +G R
Sbjct: 280 TRCKILGRVSMDLITIDVT-TLK-EVPEQVELLGQKQSVDTVADAIGTIGYEVLTSLGNR 337

Query: 365 YAKFYT 370
           YA+ YT
Sbjct: 338 YARTYT 343


>gi|126740432|ref|ZP_01756120.1| alanine racemase [Roseobacter sp. SK209-2-6]
 gi|126718568|gb|EBA15282.1| alanine racemase [Roseobacter sp. SK209-2-6]
          Length = 345

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 203/368 (55%), Gaps = 35/368 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +L I+L AL  NW ++NA++ N  TAAVVK N YGL   ++A AL  AG ++FFV + EE
Sbjct: 5   KLTINLDALVANWRNLNAMT-NCETAAVVKANGYGLDAGRVAKALAQAGARNFFVAAAEE 63

Query: 68  GVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           GV L R       I V  G   G  +++ D  L P+++S+ Q+  + + +     H + +
Sbjct: 64  GVALRRALGAGPGISVFSGHMDGDTRLLKDFQLTPMLNSLEQMLRHFESLP---GHAFGV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTL 185
           Q+D+G NRLG+   E       +    LGQ   L++SHLACAD+P+  +N+ QL+ FR +
Sbjct: 121 QLDSGMNRLGMEPAEWAAVGEIA----LGQSPVLLMSHLACADEPAHEMNAKQLKTFREM 176

Query: 186 ISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            S   GIE   SLA++ GILLGP YHF L RPGI LYGG   ++       V + +  +I
Sbjct: 177 TS---GIEVPRSLAATGGILLGPEYHFDLCRPGIGLYGGRPYLDA----LPVASLDLPVI 229

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL--SGLDSEHSPSVFLGGKGF 301
            +R   AGE V YG      R S IA  A GYADG    L  +G+D+            F
Sbjct: 230 QVRDLEAGESVGYGNAWIAKRPSRIATVAAGYADGLQRALMNTGIDT------------F 277

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
                 PI+G+++MD+   D+T +LS +V  ++ +      +D +A A+GT  Y+ L  +
Sbjct: 278 AGETPCPIVGRVSMDLITVDVT-ALS-DVPSHLSLLNERQGVDILADAAGTIGYEFLTSL 335

Query: 362 GTRYAKFY 369
           G RYA+ Y
Sbjct: 336 GHRYARTY 343


>gi|90423792|ref|YP_532162.1| alanine racemase [Rhodopseudomonas palustris BisB18]
 gi|90105806|gb|ABD87843.1| alanine racemase [Rhodopseudomonas palustris BisB18]
          Length = 407

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 190/366 (51%), Gaps = 14/366 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW  +   +  +  A VVK +AYG G   +A AL  AG + FFV +++E 
Sbjct: 33  LSIDLDAIVANWRKLEKTAVPSECAGVVKADAYGCGAGPVARALLAAGCKTFFVATLDEA 92

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYA 125
            +LR   P A ++VL G  P       + +  PVI S+ +L  +     C  S      A
Sbjct: 93  RELRAAAPAAVVYVLDGFLPNCGDAYAELDCQPVIGSLDELAEWDSF--CRRSFWKGGAA 150

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + +DTG NRLGL + EA            G ++L++SHLACA+  +  +N+ Q   FR +
Sbjct: 151 IHIDTGMNRLGLGIAEAEGIVPRITAGDHG-ITLVLSHLACAETLNHPLNAKQASHFRGI 209

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            S + G+ ASL++SSGI LG  +HF L RPG +LYG        +PMQ VVT ++RI+ +
Sbjct: 210 ASAFSGVPASLSASSGIYLGQQFHFDLVRPGAALYGINPTPEADNPMQPVVTLQSRILQV 269

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+   G+ V YG      R + IAV A GYADGY       D      V       I G 
Sbjct: 270 REVARGDTVGYGATWTARRPTRIAVVAAGYADGYFRAAGSSDGTRGADV------IIAGQ 323

Query: 306 MVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             P+ G+I+MD+   D+TD    +   G    + G  I +D++A   GT  Y++L  +G 
Sbjct: 324 RCPVAGRISMDLLAVDVTDLPPNAARRGHMATLIGDGITVDELAHHFGTIGYEVLTSLGK 383

Query: 364 RYAKFY 369
           RYA+ Y
Sbjct: 384 RYARQY 389


>gi|326388436|ref|ZP_08210032.1| alanine racemase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207168|gb|EGD57989.1| alanine racemase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 372

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 190/364 (52%), Gaps = 17/364 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  +      A+ A VVK + YGLG   +A  L + G + F V  + E 
Sbjct: 7   LTIDLGALAANYRLIRQQVSPAQVAGVVKADGYGLGAALVARTLIDEGCRHFCVALLGEA 66

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126
             L  +   +A +FVL G+ PG E        IPV++S+ Q+  +S +  + G   P  L
Sbjct: 67  AALVPHVRGEADVFVLNGLLPGDEAECATLGAIPVLNSLDQIELWSAQARARGRKLPAML 126

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +R+GLS +E               +  +ISHLACADDP++  N+ Q ERFR + 
Sbjct: 127 QFDTGMSRMGLSPEEIDRLLATPDVLDPIDVRFLISHLACADDPTAAANAEQAERFRAIT 186

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +H+ G+  +L +S G  L    HF L R GI+LYGG  +   ++PM  VV  EARI  +R
Sbjct: 187 AHFPGVPRALDNSGGSFLD-RGHFDLVRAGIALYGGAPRAG-ANPMHAVVALEARIAQLR 244

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YG   +  R++ IA   +GYADG+P  L              G  +I G  
Sbjct: 245 TIPAGTGVGYGLTFRAERETRIATIQVGYADGWPRCLGNR-----------GAAYIGGVR 293

Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            PI G+++MD    D+TD  +  +  G  +++ GP   +DDVA  +GT +Y++L ++  R
Sbjct: 294 APIAGRVSMDSITLDVTDVPAEHLFPGAPVELVGPHQSIDDVANDAGTISYEILTQLSRR 353

Query: 365 YAKF 368
           Y + 
Sbjct: 354 YDRI 357


>gi|75676204|ref|YP_318625.1| alanine racemase region [Nitrobacter winogradskyi Nb-255]
 gi|74421074|gb|ABA05273.1| alanine racemase region [Nitrobacter winogradskyi Nb-255]
          Length = 395

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 181/365 (49%), Gaps = 11/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  A V+K +AYG G   +A AL  AG + FFV +++E 
Sbjct: 29  LTVDLDAIVANWRKLEKTAVPAECAGVIKADAYGCGARPVARALSAAGCRTFFVATLDEA 88

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
             +R     A I+VL G            N  PVI  + +L  +       G +   A+ 
Sbjct: 89  RVVRAAASTADIYVLDGFFQNCGDAFATINCRPVIGDLNELAEWDVFCRRTGWAGGAAIH 148

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL+L EA        N     ++L++SHLACA+     +N+ Q+  FR +  
Sbjct: 149 IDTGMNRLGLTLDEAQGILPR-INAGDHGVTLVMSHLACAESLHHPLNASQVAAFREIAR 207

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASLA+SSGI LG  Y F L RPG +LYG       ++PMQ V+  +ARII  R 
Sbjct: 208 QFSGVPASLANSSGIFLGAQYQFDLVRPGAALYGVNPTPEAANPMQPVIELKARIIQTRS 267

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R + +AV + GYADGY       D      V       + G   
Sbjct: 268 IDRGESVGYGATWTARRPTRLAVVSAGYADGYFRAGGSNDGTRGAEV------VVAGTRC 321

Query: 308 PILGKITMDMTMFDITD---SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           P+ G+I+MD+   DITD      +  G    + G  I +D++A   GT  Y++L  +G R
Sbjct: 322 PVAGRISMDLLAVDITDLPAHAGVRRGHLATLIGEGITVDELAHHFGTIGYEVLTSLGGR 381

Query: 365 YAKFY 369
           Y + Y
Sbjct: 382 YHRIY 386


>gi|114797948|ref|YP_759453.1| alanine racemase [Hyphomonas neptunium ATCC 15444]
 gi|114738122|gb|ABI76247.1| alanine racemase [Hyphomonas neptunium ATCC 15444]
          Length = 351

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 189/358 (52%), Gaps = 25/358 (6%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75
           + +NW +++AL   A TAAVVK +AYGLG  ++A AL  AG Q FFV   EEG+ +R   
Sbjct: 14  IADNWRTLDALHPGATTAAVVKADAYGLGAMRVARALRIAGCQTFFVAYAEEGLIVRKAA 73

Query: 76  PQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNR 134
            +A RIFVL G    +     D +L  V+SS      + KL         AL  DTG NR
Sbjct: 74  GKAARIFVLNGPVRSEMATYRDADLTAVLSS----EAHVKLWGTAPKGSCALHFDTGMNR 129

Query: 135 LGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI 192
           LGL +    D +       ++L Q  LI+SHLACADDP +  N+ Q + F  +   +   
Sbjct: 130 LGLPM----DMSEKDLAALRRL-QPVLIMSHLACADDPENPANTAQRKAFNEISDAFPDT 184

Query: 193 EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGE 252
            ASLA+S+G  LG  + + LTRPG++LYGGT    K   ++  V  EA I+       G 
Sbjct: 185 PASLANSNGCYLGKGFAYDLTRPGLALYGGTTPPEKVK-LKPGVILEASILATFSGQTGT 243

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            V YGG   L  D ++A  A+GYADG P   +   +           G+++G   P+LG+
Sbjct: 244 KVGYGGTHTLPEDRILATCALGYADGIPRAGANQIT-----------GWLEGNPCPVLGR 292

Query: 313 ITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I+MD+   D+TD +   + G  ++  G + KL+  A A GT  Y+LL  +G R  + Y
Sbjct: 293 ISMDLITLDVTDCVKHAKPGARVEFLGENAKLEVQAAACGTLGYELLTGLGPRVQRVY 350


>gi|163741439|ref|ZP_02148830.1| alanine racemase [Phaeobacter gallaeciensis 2.10]
 gi|161385173|gb|EDQ09551.1| alanine racemase [Phaeobacter gallaeciensis 2.10]
          Length = 345

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 197/371 (53%), Gaps = 39/371 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL ++L AL  NW +++AL+ N  TAAVVK N YGL   ++  AL NAG ++FFV   EE
Sbjct: 5   RLTLNLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGKALANAGARNFFVAMAEE 63

Query: 68  GVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           GV L R   P   I V  G   G  K++ D  L P+++S+ Q+  + + +     HP+ +
Sbjct: 64  GVALRRAIGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQMLRHFESLP---GHPFGV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLG+   E       + ++      L++SHLACAD+ +  +NS QL+ F  L 
Sbjct: 121 QLDTGMNRLGMEAAEWAAVRDIALSQG---PVLLMSHLACADETTHPMNSHQLQNFLDLT 177

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                +  SLA++ G+LLG NYHF L RPGI LYGG      + P   V   +  +I IR
Sbjct: 178 EGLD-LPRSLAATGGLLLGRNYHFDLCRPGIGLYGG-QPYGDALP---VAQLDLPVIQIR 232

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               GE V YG      R S IA  A GYADG    L              G G I+ Y 
Sbjct: 233 SLDPGETVGYGNSWAAQRPSRIATVAAGYADGLHRAL--------------GSGQIQVYA 278

Query: 307 ----VPILGKITMDMTMFDITDSLSIEVGD---YIQIFGPDIKLDDVALASGTTNYDLLV 359
                P++G+++MD+   D+TD     +GD   ++ I      +D +A A+GT  Y++L 
Sbjct: 279 GGTPCPVVGRVSMDLITVDVTD-----LGDDPSHLAILNERQTVDTLADAAGTIGYEILT 333

Query: 360 RIGTRYAKFYT 370
            +G+RYA+ YT
Sbjct: 334 SLGSRYARSYT 344


>gi|149202594|ref|ZP_01879566.1| alanine racemase [Roseovarius sp. TM1035]
 gi|149143876|gb|EDM31910.1| alanine racemase [Roseovarius sp. TM1035]
          Length = 345

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 193/365 (52%), Gaps = 32/365 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW +++A++  + TAAVVK +AYGLG  ++AP L  AG + FFV   EEG
Sbjct: 6   LTIDLDAIVANWRALDAMN-TSETAAVVKADAYGLGAARVAPTLARAGARHFFVAVAEEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR        I+V  G  PG  +++    LIP+I+S+ Q+  +++ +     HP+ +Q
Sbjct: 65  APLRETLGAVPAIYVFSGHMPGDAEMLRAHKLIPMINSLDQMIRHAEALP---GHPFGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G NRLG+   E       +  +     +LI+SHLACAD+P   +N  QL  FR +  
Sbjct: 122 LDSGMNRLGMEPAEWAALRQIALAQN---PTLIMSHLACADEPDHAMNPQQLATFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  S A++ GILL   YHF L RPGI +YGG    + +HP   VVT E  +I  R 
Sbjct: 179 GLD-VPRSFANTGGILLDAAYHFDLARPGIGVYGGR-PFDAAHP---VVTLEIPVIQCRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL---SGLDSEHSPSVFLGGKGFIKG 304
            L GE V Y       R + IA  A GYADG    +   + L ++ +P            
Sbjct: 234 LLPGETVGYANSFTANRPTRIATVAAGYADGILRAMGPKTSLWADDTP------------ 281

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              PI G+I+MD+   DITD L  +    + + GP   +D +A  +GT  Y++L  +G R
Sbjct: 282 --CPIAGRISMDLICVDITD-LGHDPAS-LNLLGPHQTIDTLADNAGTIGYEILTSLGAR 337

Query: 365 YAKFY 369
           Y + Y
Sbjct: 338 YTRRY 342


>gi|99081620|ref|YP_613774.1| alanine racemase [Ruegeria sp. TM1040]
 gi|123077575|sp|Q1GFQ4|ALR_SILST RecName: Full=Alanine racemase
 gi|99037900|gb|ABF64512.1| alanine racemase [Ruegeria sp. TM1040]
          Length = 345

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 193/364 (53%), Gaps = 25/364 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RLKI+L AL  NW +++A + N  TAAVVK N YGL   ++  AL  AG ++FFV   EE
Sbjct: 5   RLKINLDALAINWRNLDAKT-NCETAAVVKANGYGLESGRVGKALAQAGARNFFVAIAEE 63

Query: 68  GVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G+ L R   P   I V  G   G  K++ D  L P+++S+ Q+  + + +     HP+ +
Sbjct: 64  GIALRRALGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQMLRHFESLP---GHPFGV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G NRLG+   E +     + ++      L++SHLAC+D+P   +N+ QL+ F  + 
Sbjct: 121 QLDSGMNRLGMEAAEWMAVRDIALDQN---PVLLMSHLACSDEPGHGMNAYQLKNFIEMT 177

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                I  SLA++ G+LLG +YHF L RPGI LYGG    +       VV  E  +I +R
Sbjct: 178 EGLN-IPRSLAATGGLLLGRDYHFDLCRPGIGLYGGAPYADA----LPVVELEVPVIQVR 232

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               GE V YG      RDS IA  A GYADG           H      G   +  G  
Sbjct: 233 DLAPGESVGYGNTWIAQRDSKIATIAGGYADGL----------HRAFQRQGIMAYAGGTP 282

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P++G+I+MD+   D+TD    EV  Y+ +      +D +A A+ T  Y++L  +G RYA
Sbjct: 283 CPVVGRISMDLITVDVTD--LAEVPPYLSLMNETQTVDVLANAADTIGYEVLTSLGNRYA 340

Query: 367 KFYT 370
           + Y+
Sbjct: 341 RTYS 344


>gi|254294303|ref|YP_003060326.1| alanine racemase [Hirschia baltica ATCC 49814]
 gi|254042834|gb|ACT59629.1| alanine racemase [Hirschia baltica ATCC 49814]
          Length = 370

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 190/362 (52%), Gaps = 20/362 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L  + NNW  +  LSG A T AVVK NAYGLG E++A  LY AG + FFV  ++E ++
Sbjct: 19  VHLQNVVNNWKELARLSGAADTGAVVKANAYGLGAEQVASTLYEAGCRTFFVAHIDEAIQ 78

Query: 71  LRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +R      A +F+ +GI       +   +++PV++S  Q+  +   +  G   P AL VD
Sbjct: 79  IRKTLGNLALVFIFHGIQADNVDDVIAHDIVPVLNSTDQVELW---IRSGAPFPAALHVD 135

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           TG NRLGL L+E  +        ++G    ++SHLACAD P   +N+ QL  F  + + +
Sbjct: 136 TGMNRLGLQLKELANVKKRLPANRIG---WVMSHLACADIPEHPMNARQLALFEKVAAIW 192

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249
              E SL++++GI LG  Y F LTRPGI LYGG  +     P   V  +   + +I    
Sbjct: 193 PHAEKSLSNTAGICLGSKYTFDLTRPGIGLYGGYSRKGVFTPSHCVTLSAPILSIIEPDA 252

Query: 250 AGE-LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
           + E  + YG   K+T    +A  A+GYADG   +LS             G  F+ G    
Sbjct: 253 SNENTIGYGATSKVTNGQRLATIALGYADGALRSLSN-----------SGFVFVNGVPCS 301

Query: 309 ILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           I+G+++MD+   DIT++ +   V D ++  G    ++  A A+ T +Y+LL  +G R  +
Sbjct: 302 IVGRVSMDLITIDITNAPTRTTVLDRVEFLGQHASVEIQARAASTASYELLTSMGERIPR 361

Query: 368 FY 369
            Y
Sbjct: 362 VY 363


>gi|121602454|ref|YP_989355.1| alanine racemase [Bartonella bacilliformis KC583]
 gi|120614631|gb|ABM45232.1| alanine racemase [Bartonella bacilliformis KC583]
          Length = 373

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 191/366 (52%), Gaps = 21/366 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+  N+  +      A  +AVVK NAYG+G EKI+ ALY AG + FFV+ ++E ++
Sbjct: 21  IDLGAIIANYKILAQHIAPAECSAVVKANAYGMGAEKISSALYQAGCRTFFVSQIQEALQ 80

Query: 71  LRLYTPQARIFVLY-GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYAL 126
           L+   P     VL  G  P  E+ +    LIPV++S   +  +   M C   H   P  +
Sbjct: 81  LKTILPSNITLVLLNGFPPTTEEFVAQAGLIPVLNSWHAIESWQ--MLCQKKHQKFPAII 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E           +   +  I+SHL+  DD +   N  QL   +T +
Sbjct: 139 QIDTHMNRLGLDQEELQQLIKQPTIFEKANIKYIMSHLSNGDDATHASNDTQLTAMKTAL 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     + SLA+S GI L  +++F L RPGI+LYG         P++ V+  E ++I  R
Sbjct: 199 AQLPTCKVSLANSGGIFLNSDFYFDLVRPGIALYGVDPHGKCPTPIKPVLKLETQVIQSR 258

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YGG    +R S +   +IGYADG+  TLS             G  +  G+ 
Sbjct: 259 HVDAGTPVGYGGSFVTSRPSTLTTISIGYADGWLRTLSN-----------KGVVYFNGHK 307

Query: 307 VPILGKITMDMTMFDITDSLSIE---VGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           +PI+G+I+MD T+ D TD L  E   +GD++++ GP   ++DVA  + T  Y++L  +G 
Sbjct: 308 LPIIGRISMDSTIVDATD-LECEKPKIGDWVELIGPHQTVEDVAADADTIPYEILTSLGP 366

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 367 RCKRIY 372


>gi|163739575|ref|ZP_02146984.1| alanine racemase [Phaeobacter gallaeciensis BS107]
 gi|161387034|gb|EDQ11394.1| alanine racemase [Phaeobacter gallaeciensis BS107]
          Length = 345

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 197/371 (53%), Gaps = 39/371 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL ++L AL  NW +++AL+ N  TAAVVK N YGL   ++  AL NAG ++FFV   EE
Sbjct: 5   RLTLNLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGRALANAGARNFFVAMAEE 63

Query: 68  GVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           GV L R   P   I V  G   G  K++ D  L P+++S+ Q+  + + +     HP+ +
Sbjct: 64  GVALRRAIGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQMLRHFESLP---GHPFGV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLG+   E       + ++      L++SHLACAD+ +  +NS QL+ F  L 
Sbjct: 121 QLDTGMNRLGMEAAEWAAVRDIALSQG---PVLLMSHLACADETTHPMNSHQLQNFLDLT 177

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                +  SLA++ G+LLG NYHF L RPGI LYGG      + P   V   +  +I IR
Sbjct: 178 EGLD-LPRSLAATGGLLLGRNYHFDLCRPGIGLYGG-QPYGDALP---VAQLDLPVIQIR 232

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               GE V YG      R S IA  A GYADG    L              G G I+ Y 
Sbjct: 233 SLDPGETVGYGNSWAAQRPSRIATVAAGYADGLHRAL--------------GSGQIQVYA 278

Query: 307 ----VPILGKITMDMTMFDITDSLSIEVGD---YIQIFGPDIKLDDVALASGTTNYDLLV 359
                P++G+++MD+   D+TD     +GD   ++ I      +D +A A+GT  Y++L 
Sbjct: 279 GDTPCPVVGRVSMDLITVDVTD-----LGDDPSHLAILNERQTVDTLADAAGTIGYEILT 333

Query: 360 RIGTRYAKFYT 370
            +G+RYA+ YT
Sbjct: 334 SLGSRYARSYT 344


>gi|310815865|ref|YP_003963829.1| alanine racemase [Ketogulonicigenium vulgare Y25]
 gi|308754600|gb|ADO42529.1| alanine racemase [Ketogulonicigenium vulgare Y25]
          Length = 345

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 187/363 (51%), Gaps = 28/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW  + A+S  A   AV+K +AYG G  ++  AL  AGV+ FFV   EEG
Sbjct: 6   LTIDLDAIIGNWRKLAAMS-RAEAGAVLKADAYGTGAARVGAALAEAGVRKFFVAVAEEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR    P   IFVL G       +I   NL PV++S  QL    +        P+A+Q
Sbjct: 65  VALREAVGPAPEIFVLSGHGTTDTALIRQLNLTPVLNSPQQL---RRQFDALPGRPFAIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG   ++    T            LI+SHLACAD+P   +N+ QL+ F+ +  
Sbjct: 122 LDTGMNRLGFEWEDWAAVTDEVLGAGP---RLIMSHLACADEPDHPMNAYQLDLFKQMTE 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             + +  SLA++ GILLGP+YHF L RPGI L+G       +  +Q     +  +I  R 
Sbjct: 179 GMR-VSRSLAATGGILLGPDYHFDLVRPGIGLHGAAPYAQGAQALQL----DLPVIQTRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
            + GE+V YG   +  R + +A  A GYADG    L    + +S  +             
Sbjct: 234 LIEGEVVGYGNTWQARRPTRVATLAAGYADGVLRVLGAGTNVYSGDI-----------AC 282

Query: 308 PILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           PI+G+I+MD+   DITD     EV   + + GP   +DD+A+ + T  Y++L  +  RY+
Sbjct: 283 PIIGRISMDLITVDITDLDADPEV---LTLIGPQQSVDDLAVTAKTIGYEILTSLSPRYS 339

Query: 367 KFY 369
           + Y
Sbjct: 340 RQY 342


>gi|296115772|ref|ZP_06834398.1| alanine racemase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977749|gb|EFG84501.1| alanine racemase [Gluconacetobacter hansenii ATCC 23769]
          Length = 390

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL A+  N+  + + +S     AAVVK +AYGLG  ++APAL  AG   F+V  +EE
Sbjct: 32  LRIDLDAIAANYRLVRDRVSPTTICAAVVKADAYGLGLTQVAPALQRAGADHFYVAHLEE 91

Query: 68  GVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G+ LR + TP  RIFVL+G  P  E+     +L PV++S  Q+  +  L        P  
Sbjct: 92  GIALRRHVTPATRIFVLHGPLPDTEEEFTAHDLTPVLNSAGQVAGWRALARRLDRVLPAV 151

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+DTG +R GLS+ +      ++      +  L+ISHLACAD P +  N+ Q  R   +
Sbjct: 152 IQLDTGMSRFGLSMADVRAIADDAGLLAGIRPDLVISHLACADTPQNPANAQQRARLLEM 211

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +       +L++SSGI LGP+YHF + RPG +LYG       ++P++ VV   ARI+ +
Sbjct: 212 AAMLPAAPLALSASSGIFLGPDYHFDMVRPGAALYGIAPNEATANPLRPVVRLSARILQV 271

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R  +AG+ V YG   + +    IA    GYADG      G  + H       G  +    
Sbjct: 272 RDIVAGDGVGYGLTYRASGPRRIATIGAGYADG--CLRQG--AHH-------GAAWFGAT 320

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGD--YIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            +PILG+I+MD    DITD    ++G    + + GP   +D  A A+GT  Y++L  +G 
Sbjct: 321 RLPILGRISMDSITIDITDVPVGQLGPDMAVDLLGPHYDVDAAARAAGTIGYEILTSLGH 380

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 381 RYHRAY 386


>gi|83945273|ref|ZP_00957622.1| alanine racemase [Oceanicaulis alexandrii HTCC2633]
 gi|83851443|gb|EAP89299.1| alanine racemase [Oceanicaulis alexandrii HTCC2633]
          Length = 363

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 190/369 (51%), Gaps = 23/369 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N   RL IDL A+  N+ ++ AL+  A T+AVVK NAYGLG   +A  L   G + FFV 
Sbjct: 11  NTRSRLVIDLDAIARNYAALQALTPKAETSAVVKANAYGLGAGPVARRLAKQGARTFFVA 70

Query: 64  SVEEGVKLR--LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           +VEEG  +R  L  P   I+V  G +  +++ ++  + +  I + P  T   +    G  
Sbjct: 71  TVEEGAAVREALGDPLPDIWVFAG-YRAKDRPLYVKHRLGAILNQPGETAQFRAAPTG-- 127

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P A+ +DTG  RLG    +     +   N     +S+I+SHLAC++D +S  N  QLER
Sbjct: 128 -PCAIHIDTGMARLGYGAGDISGLLNALQNL---DVSMIMSHLACSEDAASTQNLRQLER 183

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           F  L +       SLA++ G+LLG +Y F +TRPGI LYG T  ++   P + VV  EA 
Sbjct: 184 FTALTNALPETRLSLANTGGVLLGESYQFDVTRPGIGLYGATADLDADTPFEPVVKLEAP 243

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I+ +R+  AG+ V YG         L+A    GYADG P  LSG            G   
Sbjct: 244 ILQLREIDAGDTVGYGATYVAHSPRLVATVGAGYADGLPRALSG-----------AGCAR 292

Query: 302 IKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           I G   PILG+I+MD+T  D+T     I  G   + FGPD  L   A   GT  Y++L  
Sbjct: 293 IAGLRAPILGRISMDLTTIDVTGLEHEIAQGAVPEFFGPD--LYQAAALDGTLPYEILTG 350

Query: 361 IGTRYAKFY 369
           +G R  + Y
Sbjct: 351 LGARAERIY 359


>gi|162146534|ref|YP_001600993.1| alanine racemase, catabolic [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785109|emb|CAP54653.1| putative alanine racemase, catabolic [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 387

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 189/372 (50%), Gaps = 25/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L IDL A+  N+  +    G  RT   A VK +AYGLG  +I P L  AG   FFV  + 
Sbjct: 19  LTIDLDAVAANYRILRDRVGP-RTICGAAVKADAYGLGAARIVPVLAEAGCHTFFVAHLA 77

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           EG  +R L    A IFVL G  PG E  + +  L+PV++S+ Q+  +  L    G   P 
Sbjct: 78  EGAAIRPLLGTDATIFVLNGAMPGTEAALHEHGLVPVLNSLEQIARWRDLARQAGRDLPA 137

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-----LIISHLACADDPSSHVNSVQL 179
           ALQVD+G +R GLS     D   ++   + G L+     L++SHLACAD+P+   N  Q 
Sbjct: 138 ALQVDSGMSRFGLS-----DADVDALAARDGSLAGITPLLVMSHLACADEPAHPANHAQR 192

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             F  L +      ASLA+SSG+ +G ++HF + RPG +LYG        +PMQ VV  +
Sbjct: 193 AAFLRLRARLPAAPASLAASSGLFMGSDWHFDMVRPGAALYGINPTPGWPNPMQPVVRLQ 252

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARI+  R    G  V YG      R S IA  A+GY DG+P    G      P       
Sbjct: 253 ARIVQTRWIGPGTAVGYGAAFIADRPSRIATLAVGYGDGFPRAAGGHGHAVLPER----- 307

Query: 300 GFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
                  +PI+G+I+MD    D+TD     ++ G  + + GP   +D  A A+GT  Y+L
Sbjct: 308 ---PAAKLPIIGRISMDCLAVDVTDISDAPLDAGTALDLIGPHHSIDSAAAAAGTIGYEL 364

Query: 358 LVRIGTRYAKFY 369
           L  +G RY + Y
Sbjct: 365 LTGLGARYHRLY 376


>gi|319405446|emb|CBI79065.1| Alanine racemase [Bartonella sp. AR 15-3]
          Length = 373

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 125/349 (35%), Positives = 193/349 (55%), Gaps = 27/349 (7%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLY-GIHPG 89
             +AVVK +AYGLG EK+APALY AG + FF+  ++E ++L+   PQ    VL  G+ P 
Sbjct: 41  ECSAVVKADAYGLGAEKVAPALYQAGCRTFFIAHLKEALQLKAILPQNITLVLLNGLPPN 100

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHPYALQVDTGFNRLGLSLQEALDFT 146
            E++I    ++PV++S  ++  +   M C   G   P  +Q+DT  NRLGL  +E     
Sbjct: 101 AEELITKAGIVPVLNSRHEIENWQ--MHCQKNGKKFPAIIQIDTNMNRLGLDQEELKWLI 158

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGP 206
            N    +   +  IISHLA  DD +   N  Q    +T ++     +ASLA+S GI LGP
Sbjct: 159 QNPTLFERIDIKYIISHLANGDDVTHASNCAQKNAMKTALAQLPACKASLANSGGIFLGP 218

Query: 207 NYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
           +++F L RPGI+LYG     +K HP  +++V+  +A++I  R   AG  V YGG     +
Sbjct: 219 DFYFDLVRPGIALYGIDP--HKKHPTSLKSVLKLKAQVIQSRYTEAGSPVGYGGSFITQK 276

Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDI 322
            S++   AIGYADG+   LS              KGF+  K + +PI+G+I+MD    D 
Sbjct: 277 PSILTTIAIGYADGWLRNLS-------------NKGFVYFKKHKLPIIGQISMDSITVDA 323

Query: 323 TD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           T+      + GD++++ G    +++VA  +GT  Y++L  +G+RY + Y
Sbjct: 324 TNLKHEKPKRGDWVELIGRHQTIENVAADAGTIPYEILTSLGSRYKRIY 372


>gi|254509706|ref|ZP_05121773.1| alanine racemase [Rhodobacteraceae bacterium KLH11]
 gi|221533417|gb|EEE36405.1| alanine racemase [Rhodobacteraceae bacterium KLH11]
          Length = 405

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 191/362 (52%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L I+L AL  NW +++A + N  T AVVK +AYGLG E +A AL   GV+ FFV + EEG
Sbjct: 67  LTINLHALAQNWQALDAGT-NVETGAVVKADAYGLGAEPVAWALAEEGVRKFFVAAAEEG 125

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R    P   + V  G   G   ++ + +L P+I+S  Q   + + +       + +Q
Sbjct: 126 ATVREAVGPGPMVAVFSGHMEGDADLLRNHDLTPLINSPEQFKRHLQALP---DRKFGIQ 182

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL   +  +  H++   KL  L +++SHLAC+D+P   +N  QL+ F+ +  
Sbjct: 183 LDTGMNRLGLEPSDWAELRHDAL--KLDPL-VVMSHLACSDEPEHPMNKQQLQTFKQMTD 239

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             + +  SLA++ G LLG  YHF   RPGI LYGG          + VVT +  II +R 
Sbjct: 240 GVE-VPRSLAATGGTLLGSEYHFDFCRPGIGLYGGMPFAGA----KPVVTVDLPIIQVRD 294

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG   K  R S IA  A GYADG    + G           G   F      
Sbjct: 295 VAVGETVGYGNAWKARRPSKIATVAAGYADGLHRAIGG-----------GIDAFAGDQPC 343

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+I+MD+   D+TD       + ++I      +DD+A A+GT  Y++L  +G+RY++
Sbjct: 344 PVVGRISMDLITVDVTDLPYTP--ERLRILNGHQTVDDLAEAAGTIGYEILTSLGSRYSR 401

Query: 368 FY 369
            Y
Sbjct: 402 GY 403


>gi|319407017|emb|CBI80654.1| Alanine racemase [Bartonella sp. 1-1C]
          Length = 373

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 201/369 (54%), Gaps = 27/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ A+  N+ ++         +AVVK +AYGLG EKIAPALY AG + FF+  ++E ++
Sbjct: 21  IDIGAIVANYKTLVQRVAPIECSAVVKADAYGLGAEKIAPALYQAGCRTFFIAHLKEALQ 80

Query: 71  LRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHPYAL 126
           L+   P    + +L GI P  E+ +  T ++PV++S  ++  +   M C   G   P  +
Sbjct: 81  LKAILPNNVTLILLNGIPPTAEEFVTQTGIVPVLNSRNEIENWQ--MHCQKNGKKFPAII 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E      N    ++  +  IISHLA  D+ +   N  Q    +T +
Sbjct: 139 QIDTNMNRLGLDQEELQWLIQNPSLFEIADIKYIISHLANGDNATHASNCEQKNAMKTAL 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEARIIL 244
           +     +ASLA+S GI LGP+++F L RPGI LYG     ++ HP  ++ V+  +A++I 
Sbjct: 199 AQLPTCKASLANSGGIFLGPDFYFDLVRPGIGLYGIDP--HQQHPTSLKPVLKLKAQVIQ 256

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI-- 302
            R   AG  V YGG     + S++   +IGYADG+   LS              KGF+  
Sbjct: 257 SRCTEAGSPVGYGGSFITQKPSILTTISIGYADGWLRNLS-------------NKGFVYF 303

Query: 303 KGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
             + +PI+G+I+MD  + D T+      + GD++++ G    +++VA  +GT  Y++L  
Sbjct: 304 NQHKLPIIGQISMDSIIVDATNLQHEKPKRGDWVELIGKHQTIENVAADAGTIPYEILTS 363

Query: 361 IGTRYAKFY 369
           +G+RY + Y
Sbjct: 364 LGSRYKRIY 372


>gi|209543468|ref|YP_002275697.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531145|gb|ACI51082.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 387

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 190/372 (51%), Gaps = 25/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L IDL A+  N+  +    G  RT   A VK +AYGLG  +I P L  AG + FFV  + 
Sbjct: 19  LTIDLDAVAANYRILRDRVGP-RTICGAAVKADAYGLGAARIVPVLAEAGCRTFFVAHLA 77

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           EG  +R L    A IFVL G  PG E  + +  L+PV++S+ Q+  +  L    G   P 
Sbjct: 78  EGAAIRPLLGTDATIFVLNGAMPGTEAALHEHGLVPVLNSLEQIARWRDLARQAGRDLPA 137

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-----LIISHLACADDPSSHVNSVQL 179
           ALQVD+G +R GLS     D   ++   + G L+     L++SHLACAD+P+   N  Q 
Sbjct: 138 ALQVDSGMSRFGLS-----DADVDALAARDGSLAGITPLLVMSHLACADEPAHPSNHAQR 192

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             F  L +      ASLA+SSG+ +G ++HF + RPG +LYG        +PMQ VV  +
Sbjct: 193 AAFLRLRARLPAAPASLAASSGLFMGSDWHFDMVRPGAALYGINPTPGWPNPMQPVVRLQ 252

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARI+  R    G  V YG      R S IA  A+GY DG+P    G      P       
Sbjct: 253 ARIVQTRWIGPGTAVGYGAAFIADRPSRIATLAVGYGDGFPRAAGGHGHAVLPER----- 307

Query: 300 GFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
                  +PI+G+I+MD    D+TD     ++ G  + + GP   +D  A A+GT  Y+L
Sbjct: 308 ---PAAKLPIIGRISMDCLAVDVTDIGDAPLDAGTALDLIGPHHSIDSAAAAAGTIGYEL 364

Query: 358 LVRIGTRYAKFY 369
           L  +G RY + Y
Sbjct: 365 LTGLGARYHRLY 376


>gi|294084215|ref|YP_003550973.1| alanine racemase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663788|gb|ADE38889.1| alanine racemase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 383

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 201/384 (52%), Gaps = 41/384 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+ IDL A+ +NW  +++LS  +  TAA+VK N YGLG   +  ALY AG + FFV +++
Sbjct: 18  RIDIDLGAIAHNWLYLDSLSPKSTITAAMVKANGYGLGANHVGAALYKAGCRQFFVANLD 77

Query: 67  EGVKLRLY-----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGV 120
           E V  R Y        A+I VL+G H GQE  +    L PV++ + Q++ +     +   
Sbjct: 78  EAVSFRTYLDNISISDAQIMVLHGCHRGQEHDMRAYRLTPVLNDLEQVSRWRLYAQNANE 137

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL---ACADDPSSHVNSV 177
           ++P  L +DTG  RLG    +      N       +++ I+SHL     +DDP+   N+ 
Sbjct: 138 TYPAMLHLDTGMTRLGFDPDQTDWLIENKQALNGLEITYIMSHLISGEISDDPA---NTA 194

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDK-INKSHPM 232
           Q  RF    S + GI+ASLA+S G+ LG  +H+Q+TRPGI++YG    G D+ I  S+ +
Sbjct: 195 QKTRFDEYRSFFGGIKASLANSGGVFLGNEFHYQMTRPGIAIYGVHPCGKDQAITDSNGL 254

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           ++ +T   RII +R A  G  V YGG  +L+R S IA   +GYADGY   LS        
Sbjct: 255 KSCITWHGRIIQVRTAPEGATVGYGGTHRLSRPSRIATVGVGYADGYQRNLS-------- 306

Query: 293 SVFLGGKGFIK--GYMVPILGKITMDMTMFDITD-----SLSIEVGDYIQIFGPDIKLDD 345
                 K F+   G+  P++G+I+MD    D+TD      L  E    +        ++D
Sbjct: 307 -----NKAFVNILGHRAPVIGRISMDSITIDVTDIPPNIMLKAETAALLSDL---YSIED 358

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  + T  Y++L  I  R  + Y
Sbjct: 359 MANDASTIPYEILTGISRRAIRRY 382


>gi|170740813|ref|YP_001769468.1| alanine racemase [Methylobacterium sp. 4-46]
 gi|226711054|sp|B0UL34|ALR_METS4 RecName: Full=Alanine racemase
 gi|168195087|gb|ACA17034.1| alanine racemase [Methylobacterium sp. 4-46]
          Length = 364

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 186/365 (50%), Gaps = 15/365 (4%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+L AL  NW  +   +  A  AAV+K +AYG G ++  PAL+ AG + FFV  + E
Sbjct: 10  RLTINLRALAANWRRLAEEAAGAECAAVIKADAYGTGIDRAGPALWRAGCRTFFVAHLSE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
             + R   P+A I+VL G+ PG      D  L PV+ S  ++  ++      G   P AL
Sbjct: 70  AERARAALPEAVIYVLNGLPPGSAPAYRDRALRPVLGSREEIEEWAAFCRARGERLPAAL 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTG NRLGLS  EAL     +  + +   SL++SHL  A+ P   V + Q+  F  + 
Sbjct: 130 HVDTGMNRLGLSPDEALALAGGAALEDVAA-SLLVSHLVSAEVPGDAVTARQVADFARVA 188

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + + G+ ASL +S+G  LG     ++ RPG +LYGG  +    +PM+ VV  +A I+ +R
Sbjct: 189 AAFPGLTASLGNSAGTFLGARARHEMVRPGYALYGGNPRPGGPNPMRPVVRLDATILQVR 248

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G    Y  +        +A  ++GYADGYP   SG             +  + G  
Sbjct: 249 DVPPGATAGYNARWTAPGPRRLATLSLGYADGYPRAGSGR-----------AEAVVAGRR 297

Query: 307 VPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            P++G I+MD+ + D+TD+   +   G    + G  + +D+V   +GT  Y++L  +G R
Sbjct: 298 CPVVGTISMDLVILDVTDAPPEAARRGARATLIGEGLDIDEVGQRAGTIGYEILTNLGRR 357

Query: 365 YAKFY 369
             + Y
Sbjct: 358 SERAY 362


>gi|319898680|ref|YP_004158773.1| Alanine racemase [Bartonella clarridgeiae 73]
 gi|319402644|emb|CBI76189.1| Alanine racemase [Bartonella clarridgeiae 73]
          Length = 374

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 198/367 (53%), Gaps = 23/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ A+  N+ ++         +AVVK +AYGLG EKIAPALY AG + FF+  ++E ++
Sbjct: 22  IDIGAIVANYKTLARRVAPIECSAVVKADAYGLGAEKIAPALYQAGCRTFFIAHLKEALQ 81

Query: 71  LRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHPYAL 126
           L+   PQ   I +L GI    E+ +    ++PV++S   +  +   M C   G   P  +
Sbjct: 82  LKAILPQNVTIVLLNGIPLTAEEFVAQAGIVPVLNSWHAIESWQ--MHCQKNGKKFPAVV 139

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E           +   +  IISHLA  DD +   N  Q    +T +
Sbjct: 140 QIDTNMNRLGLDQEELQWLIQTPTLFETADIKYIISHLANGDDITHTSNCAQKNAMKTAL 199

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEARIIL 244
           +     +ASLA+S GI LGP+++F L RPGI+LY G D   K HP  +++V+  +A++I 
Sbjct: 200 AQLPACKASLANSGGIFLGPDFYFDLVRPGIALY-GIDPHGK-HPTSLKSVLKLKAQVIQ 257

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R   AG  V YGG     + S++   +IGYADG+   LS             G  +  G
Sbjct: 258 SRYTEAGTPVGYGGSFITQQPSILTTISIGYADGWLRNLSN-----------KGSVYFNG 306

Query: 305 YMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           Y +PI+G+I+MD  + D T+      + GD++++ G    +++VA  +GT  Y++L  +G
Sbjct: 307 YKLPIIGQISMDSIIVDATNLKHKKPKRGDWVELIGIHQTIENVAADAGTIPYEILTSLG 366

Query: 363 TRYAKFY 369
           +RY + Y
Sbjct: 367 SRYKRIY 373


>gi|115525335|ref|YP_782246.1| alanine racemase [Rhodopseudomonas palustris BisA53]
 gi|115519282|gb|ABJ07266.1| alanine racemase [Rhodopseudomonas palustris BisA53]
          Length = 404

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 187/364 (51%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  A  A VVK + YG G   +  AL  AG + FFV ++EE 
Sbjct: 31  LTIDLDALIANWRRLEKTAVPAECAGVVKADGYGCGAGPVTKALAAAGCKTFFVATLEEA 90

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
             +R   P+A ++VL G+ P        T   PVI S+ +L  +       G     A+ 
Sbjct: 91  RAVRAAAPEAALYVLNGLFPNCGDGFAATGAQPVIGSLDELAEWDVFCRRTGWKGGAAIH 150

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGLS+ EA        N     ++L++SHLACAD  +  +N+ Q+  FR +  
Sbjct: 151 IDTGMNRLGLSIAEAQGIVPR-INAGDHGITLVMSHLACADMLNHPLNAKQVGAFREIAG 209

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASLA+SSGI LG ++ F + RPG +LYG        +PMQ VVT +ARI+ +R+
Sbjct: 210 LFSGVPASLAASSGIYLGSHFGFDMVRPGAALYGINPTPEADNPMQPVVTLQARILQVRE 269

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R S +AV + GYADGY     G D      V       I G   
Sbjct: 270 VERGETVGYGATWTARRASKLAVISAGYADGYFRAAGGSDGTRGADV------IIAGQRC 323

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI G+I+MD+   D+TD    +   G    + G  I +D++    GT  Y++L  +G RY
Sbjct: 324 PIAGRISMDLLAVDVTDLAPNAARRGQMATLLGDGISVDELGHHFGTIGYEVLTSLGARY 383

Query: 366 AKFY 369
            + Y
Sbjct: 384 QRTY 387


>gi|319404005|emb|CBI77593.1| Alanine racemase [Bartonella rochalimae ATCC BAA-1498]
          Length = 373

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 199/367 (54%), Gaps = 23/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ A+  N+ ++         +AVVK +AYGLG EKIAPALY AG + FF+  ++E ++
Sbjct: 21  IDIGAIIANYKTLVQRVAPVECSAVVKADAYGLGAEKIAPALYQAGCRTFFIAHLKEALQ 80

Query: 71  LRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHPYAL 126
           L+   P    + +L GI P  E+ +  T ++PV++S  ++  +   M C   G   P  +
Sbjct: 81  LKAILPNNVTLILLNGIPPTAEEFVTQTGIVPVLNSRNEIENWQ--MHCQKNGKKFPAII 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E      N    ++  +  IISHLA  D+ +   N  Q    +  +
Sbjct: 139 QIDTNMNRLGLDQEELQWLIQNPTLFEIADIKYIISHLANGDNATHTSNCEQKNAMKKAL 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEARIIL 244
           +     +ASLA+S GI LGP+++F L RPGI LYG     ++ HP  +++V+  +A++I 
Sbjct: 199 AQLPACKASLANSGGIFLGPDFYFDLVRPGIGLYGIDP--HQKHPTSLKSVLKLKAQVIQ 256

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R   AG  V YGG     + S++   +IGYADG+   LS             G  +   
Sbjct: 257 SRCTEAGTPVGYGGSFITQKPSILTTISIGYADGWLRNLSN-----------KGSVYFNQ 305

Query: 305 YMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           + +PI+G+I+MD  + D T+      + GD++++ G    +++VA  +GT  Y++L  +G
Sbjct: 306 HKLPIIGQISMDSIIVDATNLKHEKPKRGDWVELIGKHQTVENVAADAGTIPYEILTSLG 365

Query: 363 TRYAKFY 369
           +RY + Y
Sbjct: 366 SRYKRIY 372


>gi|158423689|ref|YP_001524981.1| alanine racemase [Azorhizobium caulinodans ORS 571]
 gi|158330578|dbj|BAF88063.1| alanine racemase [Azorhizobium caulinodans ORS 571]
          Length = 393

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 197/365 (53%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  +   +  A  AAVVK +AYGLG   ++  LY  G + FFV    E 
Sbjct: 39  LTIDLGALARNYRKLKETAAPAAVAAVVKADAYGLGAGLVSERLYAEGCRHFFVAHFVEA 98

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V+LR   P +A + VL G+ PG+E+   D  + PVI+ + Q   ++      G     A+
Sbjct: 99  VRLRPTLPVEATLLVLNGLMPGEEEHAADLGVTPVINCLEQAAAWATEAKVRGTRLKAAI 158

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG +RLGLS  +      +S   +  +  L++SHLACAD P++  ++ QL   + + 
Sbjct: 159 QIDTGMSRLGLSEADVASLRADSLFAEAVEPILLMSHLACADTPAAPASAGQLAVMQRVA 218

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +H+ G+  SLA+S G+ LG  +HF L RPGI++YGG    + ++PM+ VV  +  +I  R
Sbjct: 219 AHFPGLPVSLANSGGVFLGGAFHFALARPGIAVYGGAPVSDVANPMEPVVRIDIPVIQAR 278

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YGG    T ++ +A  + GYADG P  LS             G  + +G  
Sbjct: 279 TVPAGTAVGYGGTFVTTGETRLATLSGGYADGIPRHLSS-----------SGALYYQGVR 327

Query: 307 VPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI G+++MD    D +      + +G  ++  GP   L+ VA  +GT +Y++L R+G R
Sbjct: 328 LPIAGRVSMDSLTVDASALPEGGLRLGTMVEFVGPSQSLEQVAADAGTISYEILTRLGRR 387

Query: 365 YAKFY 369
           Y + Y
Sbjct: 388 YRRVY 392


>gi|197103527|ref|YP_002128904.1| alanine racemase [Phenylobacterium zucineum HLK1]
 gi|196476947|gb|ACG76475.1| alanine racemase [Phenylobacterium zucineum HLK1]
          Length = 382

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 198/370 (53%), Gaps = 25/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+A++ N+ ++   +  AR AAVVK +AYGLG   ++ AL   G +DFFV  + E 
Sbjct: 14  LWIDLSAVRENFRALARHAAPARLAAVVKADAYGLGAGPVSEALAAEGCRDFFVAHLSEA 73

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           ++L+   P+ AR++VL G+  G+E       ++PV++S+ Q   +S+L    G + P  L
Sbjct: 74  LELKPVLPEDARLYVLNGLAAGREPACAAAGVLPVLNSLDQAERWSRLAPDGGAAPPAVL 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQL--SLIISHLACADDPSSHVNSVQLERFRT 184
           Q+D+G +RLGL   E      ++    LG+L   L++SHLACAD+P    N+ Q E F  
Sbjct: 134 QIDSGMSRLGLPEAEVRRLAGDA--DLLGRLRIDLLMSHLACADEPDHPANAAQAEAFDR 191

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT-DKINKSHPMQTVVTAEARII 243
           L +       SLA+S G LLGP +  QL R G+ L+GG   ++    P   VV   A ++
Sbjct: 192 LAAALPDWPRSLANSHGALLGPRFRHQLVRSGVFLFGGVRSQVLSPRP---VVRLTAPVV 248

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AG  V YG        + IA  A+GYADG+   L    +E  P++F        
Sbjct: 249 QVRDVPAGAGVGYGFAHVTRAPARIATVALGYADGWSWNL----AEGWPALF-------D 297

Query: 304 GYMVPILGKITMDMTMFDIT----DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           G  +P+ G+++MD    D+T        ++ GD ++  G    + D A A+GT  Y++L 
Sbjct: 298 GQTLPVAGRVSMDSITLDVTAFEAAGGRLQPGDEVEFLGAGRDIVDAAEAAGTIPYEILT 357

Query: 360 RIGTRYAKFY 369
           R+G R  + Y
Sbjct: 358 RMGRRLQRRY 367


>gi|114799438|ref|YP_761112.1| alanine racemase [Hyphomonas neptunium ATCC 15444]
 gi|114739612|gb|ABI77737.1| alanine racemase [Hyphomonas neptunium ATCC 15444]
          Length = 396

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 201/372 (54%), Gaps = 17/372 (4%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++E  RL ID+ A+  N+  + A+   AR AAVVK +AYGL   +IAP L   G +DFFV
Sbjct: 24  TDEAGRLTIDMGAIAANYRRLRAMHPAARVAAVVKADAYGLDATQIAPMLAGQGARDFFV 83

Query: 63  TSVEEGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGV 120
             + E + L+ L  P A +FVL G+ PG E +  +  ++PV+++  Q   +Y+  ++   
Sbjct: 84  AHLAEALVLKPLLPPDAVLFVLNGLAPGSEPLCAEAGILPVLNTPEQARAWYTLAVNKAH 143

Query: 121 SHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             P ALQVDTG +RLGLS  E  D     SF  ++  + L+++H+ACAD P +  N+ Q+
Sbjct: 144 PVPAALQVDTGMSRLGLSEGELNDVLGWPSFAGQV-NICLLMTHMACADTPGAPANADQM 202

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            RF    +    +  SLA+S+  +  P     + RPG+ LYG          MQ  +  E
Sbjct: 203 RRFADFAARLPSVPRSLANSAAAMFLPEAAGDVLRPGLVLYGVDPGAGGVPKMQPAIALE 262

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARII +R   AG  V YG      R   +A  + GYADG+P  LS            GG 
Sbjct: 263 ARIIQLRHIPAGAGVGYGFDYIADRPLRVATLSAGYADGWPRALSN-----------GGA 311

Query: 300 GFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
            +  G+ +PILG+++MD  M D+T+    SI  GD +++ GP   ++D+A    TT +++
Sbjct: 312 TWFAGHRLPILGRVSMDSCMVDVTNLPEGSIRPGDCVELIGPHQSVNDLARQLATTPHEI 371

Query: 358 LVRIGTRYAKFY 369
           L  +G R+ + Y
Sbjct: 372 LTSLGRRFTRSY 383


>gi|255264281|ref|ZP_05343623.1| alanine racemase [Thalassiobium sp. R2A62]
 gi|255106616|gb|EET49290.1| alanine racemase [Thalassiobium sp. R2A62]
          Length = 345

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 202/364 (55%), Gaps = 30/364 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+A+  NW +++ +S  + TAAVVK N YGLG  ++A AL  AG + FFV + EE 
Sbjct: 6   LTIDLSAVIANWKALDQIS-TSETAAVVKANGYGLGSRRVARALARAGARKFFVATAEEA 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R +   +  I++  G   G   +I D  LIP+++S+ Q+  + + +    +HP+ +Q
Sbjct: 65  ANVRNVLGDEHEIYIFAGHMSGDTDMISDLGLIPLLNSLDQMVMHLEALP---NHPFGVQ 121

Query: 128 VDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +DTG NRLG+   E  A+     S N KL     I+SHLACAD+P    N++QL  FR++
Sbjct: 122 LDTGMNRLGMEPAEWGAVRDMALSQNPKL-----IMSHLACADEPDHTQNAMQLTSFRSM 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 +  SLA++ GILLG +YHF LTRPG+ LYGG    N     + VV  +  +I +
Sbjct: 177 TDGVS-VPRSLAATGGILLGSDYHFDLTRPGVGLYGGAPFANA----KPVVQLDIPVIQV 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG      R S IA  + GYADG    +SG  +            + +G 
Sbjct: 232 RDVAVGEAVGYGASWVAERPSKIATISAGYADGLIRAMSGQATL-----------WHEGI 280

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P+ G+++MD+   D+TD L I    Y+ I  P+  +DD+A  +GT  Y++L  +G RY
Sbjct: 281 PCPLAGRVSMDLLTVDVTD-LPIPP-RYLSILCPEQSVDDLAAVAGTIGYEILTSLGGRY 338

Query: 366 AKFY 369
           ++ +
Sbjct: 339 SRRF 342


>gi|254785046|ref|YP_003072474.1| alanine racemase [Teredinibacter turnerae T7901]
 gi|237683511|gb|ACR10775.1| alanine racemase [Teredinibacter turnerae T7901]
          Length = 382

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 199/380 (52%), Gaps = 27/380 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+L+ +  NW ++N  +S      AVVK +AY LG  ++ PALY AG + F+V ++ E
Sbjct: 5   LTINLSKIAANWQALNRFVSAPVDCGAVVKADAYSLGMAEVLPALYLAGCRTFYVANLGE 64

Query: 68  GVKLR--------LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            +  R         Y+  A I VL G  PG+E+   D  L+PV+ S   L  +  +   G
Sbjct: 65  ALDARGILSDVCGSYSDVA-IVVLGGCAPGEERRFIDYRLVPVLVSTAMLERWCTVN--G 121

Query: 120 VSHPY---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             H      L+++TG  RLGL   E      +        + +++SHLACAD+P   +N+
Sbjct: 122 GEHNVLGSILKLNTGMGRLGLEPAEFERVVQDPAYLARADVRMLMSHLACADEPEHSLNA 181

Query: 177 VQLERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-P 231
            QL+RFR  +      Y+ + ASLA+S+G+ LG +YHF   RPG+ LY    + +     
Sbjct: 182 EQLQRFRRALDVSSERYRPLTASLANSAGVCLGGDYHFNAVRPGLGLYTSFAQADACGLG 241

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++T V     ++ +R   AGE V YG   +  RD+ +AV A GYADG    LS  +  H 
Sbjct: 242 LETAVELHLPVVQVRNLPAGESVGYGATYRAERDARLAVVAGGYADGLFRALS--NRAHC 299

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALA 349
                 G G   G+ VP++G+I+MD T+ DI+      +  G  I+  G  + LDD+A +
Sbjct: 300 WVCAPSGAG---GWRVPVVGRISMDTTIVDISAVPEGVVAEGSRIEFIGEHVPLDDLAAS 356

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T NY++L  +G RY + Y
Sbjct: 357 AQTINYEILTSLGVRYKRHY 376


>gi|261318416|ref|ZP_05957613.1| alanine racemase [Brucella pinnipedialis B2/94]
 gi|261297639|gb|EEY01136.1| alanine racemase [Brucella pinnipedialis B2/94]
          Length = 353

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 186/352 (52%), Gaps = 28/352 (7%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKI 93
           +VK +AYGLG  ++APA Y AG +DFFV  + E V L+ +  P A ++VL G+ PG E  
Sbjct: 1   MVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEAVALKPFLKPDATLYVLNGLQPGTEAA 60

Query: 94  IFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
                ++PV++S+ Q+  ++ L +  G   P  LQ DTG +RLGLS +E      N    
Sbjct: 61  CAREGILPVLNSLEQVENWAALATRLGKKLPALLQFDTGMSRLGLSAKEFDRLLENVTLL 120

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL 212
               +   ISHLA  D+P +  N+ QL +   L++    + A+LA+S G  LG  Y+F L
Sbjct: 121 SRIDIKFAISHLANGDEPGNAANARQLAKMTALLARLPKLPAALANSGGTFLGKTYYFDL 180

Query: 213 TRPGISLYG--------GTDKI---NK--SHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
            RPGI+LYG         +DK+   NK   H +  V+T  AR+I +R    G  V YGG 
Sbjct: 181 ARPGIALYGIDPERQHDFSDKVAHENKKPKHSILPVLTLSARVIQVRDVDKGATVGYGGT 240

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
                   IA  A+GYADG   +LS             G  F     +PI+G+++MD   
Sbjct: 241 YVANGPMRIATIAVGYADGLFRSLSN-----------KGAAFFGDTRLPIIGRVSMDSIT 289

Query: 320 FDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D+T     ++++G  +++ GP  +L+DVA    T  Y++L  +G RYA+ Y
Sbjct: 290 LDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALGNRYARVY 341


>gi|262277398|ref|ZP_06055191.1| alanine racemase [alpha proteobacterium HIMB114]
 gi|262224501|gb|EEY74960.1| alanine racemase [alpha proteobacterium HIMB114]
          Length = 359

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 194/370 (52%), Gaps = 29/370 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFVTSVEE 67
           L I+L A+K N+ ++      +     VK ++YGLG   KI   L NAG + FFV ++ E
Sbjct: 8   LDINLNAVKQNYLTIKKFCSKSEICGTVKASSYGLGGHNKIVTTLKNAGCKRFFVANINE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ +R       I +L G++ G+EKI++  NL PVI+++ QL  +             + 
Sbjct: 68  GIFIRKKFKSIIINILNGLNRGEEKILYKHNLNPVINTISQLKKWLIFTKNKRKDKLVIH 127

Query: 128 VDTGFNRLGLS---LQEALDFTH--NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            DTG  RLG+    + E L      N F +      +I+SHLACA D  ++ N  Q ++F
Sbjct: 128 FDTGMCRLGIQEDQITEVLKLKDQINKFKE-----VIIMSHLACAGDKKNNYNEKQRKKF 182

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
             +   + G + SLA+S GI LG  YH+ L RPGI+LYGG+  +N    ++ VV+ +A I
Sbjct: 183 EKIRRTFPGYKYSLAASGGIFLGKKYHYDLVRPGINLYGGSKSLN--SKIKHVVSLKAPI 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I I     GE   Y    K  RDS+ A   +GYADG  + LS              KG++
Sbjct: 241 IQINNLKKGETAGYSRTFKAKRDSITATIPMGYADGIGIRLS-------------NKGYV 287

Query: 303 --KGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             K   +P++G+++MD+ + DIT     I+VGD+++++     +D+ A  +GT  Y ++ 
Sbjct: 288 HFKNKKIPMIGRVSMDLIILDITKFKNKIKVGDFVEVYNDKFTIDNFANLTGTIPYRIIT 347

Query: 360 RIGTRYAKFY 369
            I  RY + Y
Sbjct: 348 CISKRYLRNY 357


>gi|49475978|ref|YP_034019.1| alanine racemase [Bartonella henselae str. Houston-1]
 gi|49238786|emb|CAF28055.1| Alanine racemase [Bartonella henselae str. Houston-1]
          Length = 372

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 189/362 (52%), Gaps = 14/362 (3%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ A+  N+ ++         +AVVK NAYGLG  KIAPALY AG + FFV  +EE ++
Sbjct: 21  IDVRAIVANYRTLAQHVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQ 80

Query: 71  LRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           L+   P+   I +L G     E+ +  + +IP+++S   +  +  L        P  +QV
Sbjct: 81  LKAVLPENVMIALLNGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQV 140

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DT  +RLGL  +E      N    +  ++  I+SHLA  +D S   N+ QL  F+ +++ 
Sbjct: 141 DTNMSRLGLDKKELQKLIKNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQ 200

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
               + S A+S GI LG +++F L RPGI+LYG         P++ VV  EA+++  R  
Sbjct: 201 LPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPHGKHPTPLKAVVKVEAQVLQSRFI 260

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            AG  V Y       R S +A  +IGYADG+P  LS             G  +  G+ +P
Sbjct: 261 DAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSN-----------KGTVYFNGHKLP 309

Query: 309 ILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           I+G I+MD  + D TD     + GD++++ GP   L+ V+  + T  +++L  +G RY +
Sbjct: 310 IVGHISMDSIIVDATDLDKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKRYKR 369

Query: 368 FY 369
            Y
Sbjct: 370 IY 371


>gi|254465901|ref|ZP_05079312.1| alanine racemase [Rhodobacterales bacterium Y4I]
 gi|206686809|gb|EDZ47291.1| alanine racemase [Rhodobacterales bacterium Y4I]
          Length = 345

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 191/367 (52%), Gaps = 33/367 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+L AL  NW +++AL+ N  TAAVVK N YGL   ++  AL  AG ++FFV + EE
Sbjct: 5   RLTINLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGKALARAGARNFFVAAAEE 63

Query: 68  GVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G  L R   P   I V  G   G  K++ D  L P+++S+ Q+  + + +     HP+ +
Sbjct: 64  GGALRRALGPGPGISVFSGHMEGDAKLLKDFQLTPMLNSLDQMLRHFETLP---GHPFGV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G NRLG+   E       +  +      L++SHLACAD+P   +N+ QL  FR L 
Sbjct: 121 QLDSGMNRLGMEPGEWAAVAEIALGQN---PVLLMSHLACADEPGHGMNARQLHTFRELT 177

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                I  SLA++ G+LLG +YHF L RPGI LYGG      + P   VV  +  +I +R
Sbjct: 178 DGLD-IPRSLAATGGMLLGSDYHFDLCRPGIGLYGGL-PFKDALP---VVQLDLPVIQVR 232

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               GE   YG      R S IA  A GYADG    +              G+G I+ Y 
Sbjct: 233 DMEPGESAGYGNAWVAKRPSRIATVAAGYADGLHRAM--------------GQGGIQVYA 278

Query: 307 ----VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
                P++G+++MD+   D+TD    EV D + I      +D +A A+GT  Y++L   G
Sbjct: 279 GDTPCPVVGRVSMDLITVDVTD--LAEVPDMLAILNERQTVDMLADAAGTIGYEILTSSG 336

Query: 363 TRYAKFY 369
            R A+ Y
Sbjct: 337 HRSARTY 343


>gi|319408978|emb|CBI82637.1| Alanine racemase [Bartonella schoenbuchensis R1]
          Length = 373

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 194/365 (53%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + ID+ A+  N+ ++         +AVVK NAYG+G EK+APALY AG + FFV  ++E 
Sbjct: 19  VTIDIGAIVANYTALAQHVAPTECSAVVKANAYGIGVEKVAPALYQAGCRTFFVAQIKEA 78

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++L+   P    + +L G+ P  E+ +    ++PV++S  ++  +  L        P  +
Sbjct: 79  LQLKNILPSDVTLALLNGLPPAAEEFVAQAGIVPVLNSWHEIESWQILCQEKSKKFPAIV 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E           ++  +  IISHL+  DD +   N  QL   +T++
Sbjct: 139 QIDTNMNRLGLDQKELQQLIKCPTLFEVADIKYIISHLSNGDDFTHSSNDTQLTTIKTML 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     + SLA+S GI LGP+++F L RPGI+LYG       + P++ V+  EA++I  R
Sbjct: 199 AQLPACKVSLANSGGIFLGPDFYFDLVRPGIALYGINLHKKHTVPIKPVLKLEAQVIQSR 258

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YGG     R S++   +IGYADG+   LS             G  + KGY 
Sbjct: 259 FVEEGVPIGYGGSFITRRPSVLTTISIGYADGWMRNLSN-----------KGSVYFKGYK 307

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+I+MD  + D TD      + GD++++ G    ++DV++ + T  +++L  +  R
Sbjct: 308 LPIVGRISMDSIIVDATDLEHGKPKRGDWVELIGEHQTIEDVSIDANTVPHEILSSLSAR 367

Query: 365 YAKFY 369
             + Y
Sbjct: 368 CKRIY 372


>gi|148553730|ref|YP_001261312.1| alanine racemase [Sphingomonas wittichii RW1]
 gi|148498920|gb|ABQ67174.1| alanine racemase [Sphingomonas wittichii RW1]
          Length = 378

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 199/366 (54%), Gaps = 18/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+IDL A+ +N+  +   +  A  AAVVK +AYGLG  ++A AL +AG + FFV  + E 
Sbjct: 12  LRIDLDAIIDNYRLIQQRAAPAEVAAVVKADAYGLGAARVAAALRDAGCRRFFVAHLVEA 71

Query: 69  VKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
            +LR        I VL G+ PG E    +   +PV++++ Q+  ++ L     +  P  +
Sbjct: 72  ARLREAIGDGVEIGVLNGLQPGAETACAELGAVPVLNALDQIERWAALARASSARLPCMI 131

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGL+  E               + LI+SHLACAD+P    N  Q + F    
Sbjct: 132 QFDTGMSRLGLAPGEVRALIDRPERLDGLDIRLIMSHLACADEPERASNQHQAQAFDAFC 191

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + + GI  SL +S G LL   +H+ + R GI+LYGG  +    +PM+ VVT +AR+I +R
Sbjct: 192 ARFPGIPRSLDNSGGALLPRAHHYDVVRAGIALYGGAPQTGP-NPMRPVVTLDARVIQLR 250

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YG   +  R + +A  ++GYADG+P +L              G  ++ G+ 
Sbjct: 251 TVEPGTAVGYGLTHRFDRPARLATLSVGYADGWPRSLGNR-----------GAAYVAGHR 299

Query: 307 VPILGKITMDMTMFDITDSLSIEV---GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            PI+G+I+MD    D++D +  E+   G  I++ GP   +DDVA  +GT +Y++L ++G 
Sbjct: 300 APIVGRISMDSLTIDVSD-IPEELLLPGSLIELIGPHQSIDDVARDAGTISYEILTQLGH 358

Query: 364 RYAKFY 369
           RYA+ Y
Sbjct: 359 RYARSY 364


>gi|13473409|ref|NP_104976.1| alanine racemase [Mesorhizobium loti MAFF303099]
 gi|20137427|sp|Q98F05|ALR2_RHILO RecName: Full=Alanine racemase, catabolic
 gi|14024158|dbj|BAB50762.1| alanine racemase [Mesorhizobium loti MAFF303099]
          Length = 381

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 183/366 (50%), Gaps = 17/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A++ N+  + AL G    A VVK N YGLG  K+A AL   G   FFV  + EG
Sbjct: 27  LTIDLGAIRENYRRLKALLGGVHCAGVVKANGYGLGAAKVAAALTREGCDIFFVALLAEG 86

Query: 69  VKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
           + LR        I+VL G+ PG E       L  VI+S  QL  + + +   G   P A+
Sbjct: 87  IALRKAVGTGPDIYVLNGLPPGSEPEAVAAGLCAVINSGAQLKAWRAAVHDAGRRLPAAI 146

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVD+G +RLG++  E      +S       +  ++SHLACAD+P    N  Q   F  L 
Sbjct: 147 QVDSGMSRLGMAPAEVEALAGDSSAFDGIDIKYVMSHLACADEPRHPANEQQRLAFERLR 206

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +      ASLA+SSGI LGP+YH  L RPG +LYG      + +PM  VV  +A++   R
Sbjct: 207 AMLPRAPASLANSSGIFLGPSYHHDLARPGAALYGINPTPGEPNPMLPVVWLQAKVAQTR 266

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   G  + YG          +A  + GYADG+      L    S + F       +G  
Sbjct: 267 RIEKGAGIGYGHSYHADGPLSLATISFGYADGW------LRRSASAAWF-------EGVR 313

Query: 307 VPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +P LG+++MD  + DI+      +  GD +++ GP   +DD A  +GT  Y++L  +G R
Sbjct: 314 LPFLGRVSMDSIILDISALPPGRLREGDLVELLGPSQSVDDAAGHAGTIGYEILASLGPR 373

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 374 FHRHYV 379


>gi|254475313|ref|ZP_05088699.1| alanine racemase [Ruegeria sp. R11]
 gi|214029556|gb|EEB70391.1| alanine racemase [Ruegeria sp. R11]
          Length = 345

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 192/365 (52%), Gaps = 27/365 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +L I+L AL  NW +++AL+ N  TAAVVK N YGL   ++  AL  AG ++FFV   EE
Sbjct: 5   KLTINLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGQALAKAGARNFFVAIAEE 63

Query: 68  GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           GV LR    P   I V  G   G  K++ D  L P+++S+ Q+  + + +     H + +
Sbjct: 64  GVALRRALGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQMLRHFESLP---GHAFGV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTL 185
           Q+D+G NRLG+   E         +  LGQ   L++SHLACAD+PS  +N+ QL+ F  L
Sbjct: 121 QLDSGMNRLGMEAAEWAAVR----DIALGQGPVLVMSHLACADEPSHPMNAQQLQTFSEL 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 +  SL+++ G+LLG NYHF L RPGI LYGG      + P   V   +  +I I
Sbjct: 177 TDGLD-VPRSLSATGGLLLGRNYHFDLCRPGIGLYGG-QPFGDALP---VAQLDLPVIQI 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG      R S IA  A GYADG    L         SVF G        
Sbjct: 232 RDLDVGETVGYGNAWSAQRPSRIATVAAGYADGLHRAL----GNGGISVFAGDT------ 281

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P+ G+++MD+   DITD    +   ++ I      +D +A A GT  Y++L  +G+RY
Sbjct: 282 PCPVAGRVSMDLITVDITD--LPDSPSHLTILNEQQTVDMLADAGGTIGYEILTSLGSRY 339

Query: 366 AKFYT 370
           A+ YT
Sbjct: 340 ARSYT 344


>gi|146340278|ref|YP_001205326.1| putative alanine racemase (alr) [Bradyrhizobium sp. ORS278]
 gi|146193084|emb|CAL77095.1| putative alanine racemase (alr) [Bradyrhizobium sp. ORS278]
          Length = 393

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 188/367 (51%), Gaps = 15/367 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  A  A V+K +AYG G  ++A  L  AG + FFV ++ E 
Sbjct: 27  LTIDLDALAANWRKLEKTAVPAECAGVIKADAYGCGIPQVARTLAAAGCKTFFVATLGEA 86

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHPY 124
              R   P+ A ++VL G            N  PVI  + +L  +   M C   G     
Sbjct: 87  KIARSALPEPAALYVLDGFFQNTGDDYAAINCRPVIGDLNELAEWD--MFCRRTGWKGGA 144

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           A+ VDTG NRLGL+  +A        +   G ++L++SHLA A+  +S  N+ QL  FR 
Sbjct: 145 AIHVDTGMNRLGLTPIDAQGMIPRIQSGDHG-ITLVMSHLASAEQVNSPANARQLATFRE 203

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           + S + G+ A+LA+SSGI LG ++HF + RPG +LYG        +PMQ V   +ARI+ 
Sbjct: 204 VASVFTGVPAALAASSGIFLGASFHFDMVRPGAALYGVNPTPEADNPMQPVAEIKARIVQ 263

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R    G+ V YGG     R + IA+ + GYADGY    S  D      V + G+     
Sbjct: 264 LRDLARGDAVGYGGTWTARRPTKIAILSAGYADGYFRAASSNDGTRGADVIVAGQ----- 318

Query: 305 YMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
              P+ G+++MD+   D+TD    +   G +  + G  I +D++A   GT  Y++L  +G
Sbjct: 319 -RCPVAGRVSMDLIAVDVTDLPPKAARRGHFATLLGEGISVDELAHHFGTIGYEVLTNLG 377

Query: 363 TRYAKFY 369
            RY + Y
Sbjct: 378 RRYHRIY 384


>gi|84684702|ref|ZP_01012602.1| alanine racemase [Maritimibacter alkaliphilus HTCC2654]
 gi|84667037|gb|EAQ13507.1| alanine racemase [Rhodobacterales bacterium HTCC2654]
          Length = 349

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 197/365 (53%), Gaps = 26/365 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+IDL A+  NW +++A + ++ +T AVVK + YGLG +++A  L  AG + FFV + E
Sbjct: 5   RLQIDLDAIAANWRALDAKTASSVQTGAVVKADGYGLGVDRVAKTLAAAGARRFFVAAAE 64

Query: 67  EGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   +R    P   IF+L G   G   +I D NLIP++SSV QLT + + +       + 
Sbjct: 65  EAADVRTALGPGPAIFLLNGHMAGDADMIRDLNLIPLLSSVEQLTRHVETLP---GQSFG 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D G NRLG+   E       +        +LI+SHLACAD+P   +N++QL  F T 
Sbjct: 122 IQLDAGMNRLGMEPAEWAAVRDIALTAGP---TLIMSHLACADEPEHEMNAMQLRMF-TE 177

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
           ++    +  SLA++ GILLGP+YHF LTRPGI LYG      ++ P   VV  +  +I  
Sbjct: 178 MTEGCDVPRSLAATGGILLGPDYHFDLTRPGIGLYGAR-PFEEATP---VVHLDLPVIQT 233

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+   GE V YG        + +A  + GYADG    LS             G  F    
Sbjct: 234 REIGRGETVGYGNSWTADAPTRVATVSGGYADGITRHLSN-----------KGVLFDSAT 282

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             PILG+++MD    DI    ++   +++ + GP   +DD+A  +GT  Y++L ++G RY
Sbjct: 283 PCPILGRVSMDSIGIDIGHLDTVP--EWLTLIGPHQSVDDIADTTGTIGYEILTQLGHRY 340

Query: 366 AKFYT 370
            + YT
Sbjct: 341 TRDYT 345


>gi|85716398|ref|ZP_01047370.1| alanine racemase region protein [Nitrobacter sp. Nb-311A]
 gi|85696755|gb|EAQ34641.1| alanine racemase region protein [Nitrobacter sp. Nb-311A]
          Length = 397

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 183/365 (50%), Gaps = 11/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  A VVK +AYG G   +  AL  AG + FFV +++E 
Sbjct: 31  LTVDLDAIVANWRKLEKAAVPAECAGVVKADAYGCGSRPVVRALSAAGCKTFFVATLDEA 90

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
             +R     A I+VL G            N  PVI  + +L  +       G +   A+ 
Sbjct: 91  RVVRAAASAADIYVLDGFFQNCGDAFATINCRPVIGDINELAEWDVFCRRTGWAGGAAIH 150

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL+  EA            G ++L++SHLACA+  +  +N+ Q+  FR +  
Sbjct: 151 IDTGMNRLGLTPDEAQGILPRIEAGDHG-ITLVMSHLACAESLNHPLNARQVAAFREIAR 209

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASLA+SSGI LGP Y F L RPG +LYG       ++PMQ VV  +ARI+  R 
Sbjct: 210 LFSGVPASLANSSGIFLGPQYQFDLVRPGAALYGVNPTPEAANPMQPVVELKARIVQTRS 269

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R + +AV + GYADGY       D     ++       + G   
Sbjct: 270 IDKGESVGYGATWTARRPTRLAVVSAGYADGYFRAGGSNDGTRGANI------VVAGTRC 323

Query: 308 PILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           P+ G+I+MD+   DITD  S   +  G    + G  I +D++A   GT  Y++L  +G R
Sbjct: 324 PVAGRISMDLLAVDITDLPSPGGVRRGHLATLIGEGITVDELAHHFGTIGYEVLTSLGRR 383

Query: 365 YAKFY 369
           Y + Y
Sbjct: 384 YYRIY 388


>gi|254419455|ref|ZP_05033179.1| alanine racemase [Brevundimonas sp. BAL3]
 gi|196185632|gb|EDX80608.1| alanine racemase [Brevundimonas sp. BAL3]
          Length = 346

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 185/364 (50%), Gaps = 30/364 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL  N+H++ A++G      VVK +AYGLG E  A  L   G + FFV    EG
Sbjct: 7   LSVDLNALARNFHTLEAVTG-VPVHPVVKADAYGLGAEACAKRLMAEGARTFFVARAGEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYA 125
             LR    P+  ++VL G H     ++   +L PV++   Q+  +++    +CG      
Sbjct: 66  AALRTALGPEPVLYVLDGCHGEAAGLLKAADLRPVLNQPAQMKAWAEAGGGACG------ 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           LQ+DTG NRLG   ++A +            LSL++SHLAC D+P   +N  Q +RF  +
Sbjct: 120 LQIDTGLNRLGFRPEDAPEVFDG--------LSLVMSHLACGDEPDQPMNRRQRDRFAGM 171

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
           +  Y G+  S A+S G  LGP++ F   RPG+ LYGG  +      +  V    A ++L+
Sbjct: 172 VERYPGVTRSFANSGGCFLGPDFAFDAVRPGVCLYGGGPEGRPDERIAPVAALTAEVLLV 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V Y       R    AV A GYAD       G+   + P     G  ++ G 
Sbjct: 232 RDVRTGESVGYSRGFVAERPMRAAVVAAGYAD-------GVLRAYGPR----GAVWVAGE 280

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P+LG+I+MD+   D+T  L + VGD +++FG    +D  A A+GT +Y+LL  +  R 
Sbjct: 281 TRPLLGRISMDVCTVDVT-GLEVAVGDRVELFGAHRPIDAAAAAAGTISYELLTAVTVRV 339

Query: 366 AKFY 369
            + Y
Sbjct: 340 PRAY 343


>gi|241762419|ref|ZP_04760497.1| alanine racemase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373013|gb|EER62671.1| alanine racemase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 349

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 190/369 (51%), Gaps = 23/369 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  +  LRL++D +AL  NW S+N ++      A +K N YGLG E++   L  AG +DF
Sbjct: 1   MQISSPLRLELDKSALMANWQSLNRITAG-HCGAAIKANGYGLGAERVRHYLAQAGCRDF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           FV+S +E   L        + VL+G+         ++++ PV+ S   +   ++  +   
Sbjct: 60  FVSSWDEARLLDSSEKDFSLSVLHGLREDDLGYALNSSVKPVLCSPAMI---ARWKAHAP 116

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + P  + VDTG NRLGLS++EA     +  +     +  I+SHLACAD+    +N  QLE
Sbjct: 117 NRPCDVMVDTGMNRLGLSMEEAGSGLLDGLS-----IDNILSHLACADEADHPLNQKQLE 171

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           RFR L +  +    SLA+S+GI L  +YHF L RPG++LYGG         ++ VV   A
Sbjct: 172 RFRILAARKQAKRYSLANSAGIFLSKDYHFDLARPGLALYGGLPVPQSKDILKPVVAIAA 231

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           + I +R+  AGE + YG      +   +A+  +GYADGY             + F  G  
Sbjct: 232 QAIQVREVSAGEAIGYGACFVTPKKMRVAILHVGYADGY-----------WRAFFEKGHA 280

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
              G + P+ G+++MDM    + D+L+ + GD+   F  D  L   +  +G + Y+LL  
Sbjct: 281 RKDGVICPLAGRVSMDMITVALPDALTAQEGDW---FSVDFDLPSASQQTGLSQYELLTG 337

Query: 361 IGTRYAKFY 369
           +G RY   +
Sbjct: 338 LGHRYQSVW 346


>gi|294677111|ref|YP_003577726.1| alanine racemase [Rhodobacter capsulatus SB 1003]
 gi|294475931|gb|ADE85319.1| alanine racemase [Rhodobacter capsulatus SB 1003]
          Length = 349

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 198/369 (53%), Gaps = 38/369 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL A+  NW +++A++  A  T AVVK ++YGLG  ++A  L  AG + FFV + EE
Sbjct: 6   LRIDLDAVLANWRALDAMTSAATETGAVVKADSYGLGAARVARVLARAGARKFFVAAAEE 65

Query: 68  GVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G  +R    +   IFV  G   G  ++I D  L P+++SV Q+  +   +       + +
Sbjct: 66  GAAVRQALGEGPEIFVFSGHMAGDTEMIGDLGLTPMLNSVEQVKRHVDALPGAA---FGV 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLGL   E  D+   S         L++SHLAC+D+P   +N++QL+ FR + 
Sbjct: 123 QLDTGMNRLGL---EPADWAAVSAELIAAGPKLVMSHLACSDEPEHPMNAMQLKNFRAMT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---VVTAEARII 243
               G++ +L+++ GILLGP+YHF +TRPGI LYGG        P +T   VV     ++
Sbjct: 180 DGL-GLKRALSATGGILLGPDYHFDVTRPGIGLYGGL-------PFETARAVVRLSLPVV 231

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG---LDSEHSPSVFLGGKG 300
            IR    GE V Y       R+S IA  A GYADG     SG   L +  +P        
Sbjct: 232 QIRTVAPGETVGYANSWTAARESRIATVAAGYADGLSRRFSGKATLWAGDTP-------- 283

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
                  P++G+++MD+   D+TD    EV   ++I GP   +D +A  +GT  Y++L  
Sbjct: 284 ------CPLVGRVSMDLITVDVTD--LPEVPQSLEILGPHQGVDALAEVAGTIGYEILTA 335

Query: 361 IGTRYAKFY 369
           +G RY + Y
Sbjct: 336 LGQRYQRSY 344


>gi|260466737|ref|ZP_05812923.1| alanine racemase [Mesorhizobium opportunistum WSM2075]
 gi|259029467|gb|EEW30757.1| alanine racemase [Mesorhizobium opportunistum WSM2075]
          Length = 379

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 186/366 (50%), Gaps = 19/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A++ N+  + A  G  R A VVK + YGLG  ++A AL   G   FFV  + EG
Sbjct: 25  LTIDLGAIRENYRRLKAQLGGVRCAGVVKADGYGLGATQVASALMKDGCDTFFVALLAEG 84

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
           + LR        I+VL G+ PG E       L  VI+S  QL  + +     G   P A+
Sbjct: 85  ISLRKAIGAGPDIYVLNGLPPGSEPEAVAAGLCAVINSGAQLKAWRAAAHGAGRQLPAAI 144

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVD+G +RLG++  E      ++   +   +  + SHLACAD+P    N  Q   F  L 
Sbjct: 145 QVDSGMSRLGMAPAEVEAVVEDTGAFEGIDVRYVTSHLACADEPRHPANEQQRLAFERLR 204

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +      ASLA+SSGI LGP YH+ L RPG +LYG     + ++PM  VV  +A++   R
Sbjct: 205 ALLPAAPASLANSSGIFLGPRYHYDLARPGAALYGINPTPDATNPMLPVVGLQAKVAQTR 264

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YG          +A  + GYADG+      L    S + F       +G  
Sbjct: 265 GIEKGTGVGYGHTYHAEGPRSLATISFGYADGW------LRRSASAAWF-------EGVR 311

Query: 307 VPILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           +P LG+++MD  + D++ +LS   +  GD +++ GP   +DD A  +GT  Y++L  +GT
Sbjct: 312 LPFLGRVSMDSIILDVS-ALSPGKLREGDLVELLGPAQSVDDAAGHAGTIGYEILASLGT 370

Query: 364 RYAKFY 369
           R+ + Y
Sbjct: 371 RFHRRY 376


>gi|294011685|ref|YP_003545145.1| alanine racemase [Sphingobium japonicum UT26S]
 gi|292675015|dbj|BAI96533.1| alanine racemase [Sphingobium japonicum UT26S]
          Length = 348

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 192/365 (52%), Gaps = 27/365 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL++D  AL +NW  +    G+A   A +K + YGLG  ++   L  AG +DFFV++  
Sbjct: 8   LRLRMDEGALLSNWRWLKRQGGDAACGAAIKADGYGLGAVEVMRRLLGAGCRDFFVSNWA 67

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   L  L T    + VL+G+      +   +   PV+ +  Q+  +          P  
Sbjct: 68  EAAVLEPLVTEGVSLSVLHGVREEDLAVALASRARPVLCTEWQIARWRH----AGGGPCD 123

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRT 184
           + VDTG NRLGL      D+  +   +  G +++ ++SHLACAD+    ++  QLERF  
Sbjct: 124 VMVDTGMNRLGL------DWRGDVPARLAGLEIATLMSHLACADE-DGPLSPAQLERFSA 176

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           L    K    SLA+S+GI +G +Y F +TRPGI+LYGG  +   +  ++ VV  EA+++ 
Sbjct: 177 LRGQVKAARYSLANSAGICMGADYAFDMTRPGIALYGGVPRREAAGHIRQVVVPEAQVLQ 236

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R+  AG+ + Y    +  +D  IAV  +GYADGY    SG  S  +            G
Sbjct: 237 RRRVRAGDTIGYNATYRAPKDMQIAVLNLGYADGYLRCFSGRGSMSA-----------GG 285

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             +P++G+I+MD+T  D++    I   D++++   D KL D A ASG + Y+LL  +G R
Sbjct: 286 RHLPVVGRISMDLTAVDVSGLPDISEEDWLEV---DYKLVDAAAASGLSQYELLTGLGAR 342

Query: 365 YAKFY 369
           + + +
Sbjct: 343 FDRVW 347


>gi|49474549|ref|YP_032591.1| alanine racemase [Bartonella quintana str. Toulouse]
 gi|49240053|emb|CAF26478.1| Alanine racemase [Bartonella quintana str. Toulouse]
          Length = 372

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 190/364 (52%), Gaps = 18/364 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID++A+  N+ ++      A  +AVVK NAYGLG +KIAPALY AG + FFV  +EE ++
Sbjct: 21  IDVSAIVANYKTLAQRVAPAECSAVVKANAYGLGADKIAPALYRAGCRIFFVAQIEEALQ 80

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           L+   P      L    P   E+ I    ++PV++S   +  + KL        P  +Q+
Sbjct: 81  LKDILPSNVTLALLNGPPHATEEFIAQAGIVPVLNSWNAIENWQKLCQKKDKKFPAIIQI 140

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DT  NRLGL  +E           +  ++  I+SHLA  DD +   N  QL  F+T+++ 
Sbjct: 141 DTNMNRLGLDKKELQQLIKKPTIFEKAEIKYILSHLANGDDATHSSNYTQLAAFKTVLTQ 200

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEARIILIR 246
                AS A+S GI LGP+++F L RPGI+LY G D   K HP   + V+  EA++I  R
Sbjct: 201 LPTCRASFANSGGIFLGPDFYFDLVRPGIALY-GIDPQGK-HPTLFKPVLKLEAQVIQSR 258

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V Y       R S +   +IGYADG+   LS             G  +  G+ 
Sbjct: 259 SIEAGIPVGYEESFITRRPSTLITISIGYADGWLRILSN-----------KGTVYFNGHK 307

Query: 307 VPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +PI+G+I+MD    D T+     + GD++++ GP   L  V++ + T  +++L  +G+RY
Sbjct: 308 LPIVGRISMDSMTVDATNLDKKPQSGDWVELIGPHQTLKKVSIDANTIPHEILTSLGSRY 367

Query: 366 AKFY 369
            + Y
Sbjct: 368 QRIY 371


>gi|259416801|ref|ZP_05740721.1| alanine racemase [Silicibacter sp. TrichCH4B]
 gi|259348240|gb|EEW60017.1| alanine racemase [Silicibacter sp. TrichCH4B]
          Length = 345

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 192/364 (52%), Gaps = 25/364 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RLKI+L AL  NW +++A + +  TAAVVK N YGL   ++  AL  AG ++FFV   EE
Sbjct: 5   RLKINLDALAINWRNLDAKT-SCETAAVVKANGYGLESGRVGKALAQAGARNFFVAIAEE 63

Query: 68  GVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G+ L R   P   I V  G   G  K++ D  L P+++S+ Q+  + + M     HP+ +
Sbjct: 64  GIALRRALGPGPGISVFSGHMEGDAKLLRDFQLTPMLNSLDQMLRHFESMP---GHPFGV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G NRLG+   E +     + ++      L++SHLACAD+P   +N  QL+ F  + 
Sbjct: 121 QLDSGMNRLGMEAAEWMAVRDIALDQN---PVLLMSHLACADEPGHGMNPYQLKNFIEMT 177

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                +  SLA++ G+LLG +YHF L RPGI LYGG    + + P   VV  E  +I  R
Sbjct: 178 EGLN-LPRSLAATGGLLLGRDYHFDLCRPGIGLYGGA-PYSDALP---VVELEVPVIQTR 232

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               GE V YG      RD+ IA  A GYADG           H      G   +     
Sbjct: 233 DLAPGESVGYGNTWIAQRDTRIATIAAGYADGL----------HRAFQRQGIMAYAGSTP 282

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P++G+I+MD+   DITD    +V  Y+ +      +D +A A+ T  Y++L  +G RYA
Sbjct: 283 CPVVGRISMDLITVDITD--LDDVPPYLSLINEAQTVDVLANAADTIGYEVLTSLGNRYA 340

Query: 367 KFYT 370
           + Y+
Sbjct: 341 RTYS 344


>gi|281500991|pdb|3KW3|A Chain A, Crystal Structure Of Alanine Racemase From Bartonella
           Henselae With Covalently Bound Pyridoxal Phosphate
 gi|281500992|pdb|3KW3|B Chain B, Crystal Structure Of Alanine Racemase From Bartonella
           Henselae With Covalently Bound Pyridoxal Phosphate
          Length = 376

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 188/362 (51%), Gaps = 14/362 (3%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ A+  N+ ++         +AVV  NAYGLG  KIAPALY AG + FFV  +EE ++
Sbjct: 25  IDVRAIVANYRTLAQHVAPTECSAVVXANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQ 84

Query: 71  LRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           L+   P+   I +L G     E+ +  + +IP+++S   +  +  L        P  +QV
Sbjct: 85  LKAVLPENVMIALLNGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQV 144

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DT  +RLGL  +E      N    +  ++  I+SHLA  +D S   N+ QL  F+ +++ 
Sbjct: 145 DTNMSRLGLDKKELQKLIKNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQ 204

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
               + S A+S GI LG +++F L RPGI+LYG         P++ VV  EA+++  R  
Sbjct: 205 LPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPHGKHPTPLKAVVKVEAQVLQSRFI 264

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            AG  V Y       R S +A  +IGYADG+P  LS             G  +  G+ +P
Sbjct: 265 DAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSN-----------KGTVYFNGHKLP 313

Query: 309 ILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           I+G I+MD  + D TD     + GD++++ GP   L+ V+  + T  +++L  +G RY +
Sbjct: 314 IVGHISMDSIIVDATDLDKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKRYKR 373

Query: 368 FY 369
            Y
Sbjct: 374 IY 375


>gi|260426149|ref|ZP_05780128.1| alanine racemase [Citreicella sp. SE45]
 gi|260420641|gb|EEX13892.1| alanine racemase [Citreicella sp. SE45]
          Length = 351

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 196/365 (53%), Gaps = 28/365 (7%)

Query: 8   RLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +L IDL A++ NW ++ NA +G A   AVVK + YGLG  ++APAL   G + FFV +  
Sbjct: 11  QLTIDLAAIRANWRALANATTGEA--GAVVKADGYGLGVARVAPALAAEGARRFFVATAH 68

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG+ +R        I V  G   G  +II D  L P+++S+ Q+  + + +     H + 
Sbjct: 69  EGIAVRRALGAGPEICVFSGHMNGDAEIIRDHRLTPMLNSIDQMLRHVEALP---GHSFG 125

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D+G NRLG+   E       +  +K     LI+SHLACAD+PS  +N+ QL  FR +
Sbjct: 126 IQLDSGMNRLGMEPAEWSALREIALAQKP---VLIMSHLACADEPSHGMNAFQLRTFREM 182

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 +  SL+++ GILLGP+YHF+LTRPG+ +YGG    +     + VV     +I +
Sbjct: 183 TDGLD-VPRSLSATGGILLGPDYHFELTRPGVGIYGGQPFADA----RAVVELMLPVIQV 237

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG        + +A  A GYADG    L+      +      G    K  
Sbjct: 238 RDVAPGESVGYGNAHVARVPTRVATVAAGYADGIHRALA------AKGAVWAGDTRCK-- 289

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
              I+G+++MD+   D+T +L+ +V + +++ G    +D VA A GT  Y++L  +G RY
Sbjct: 290 ---IIGRVSMDLITVDVT-ALN-KVPEQLELLGRHQTVDMVADAVGTIGYEILTGLGARY 344

Query: 366 AKFYT 370
           A+ YT
Sbjct: 345 ARAYT 349


>gi|163732015|ref|ZP_02139461.1| alanine racemase [Roseobacter litoralis Och 149]
 gi|161394313|gb|EDQ18636.1| alanine racemase [Roseobacter litoralis Och 149]
          Length = 344

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 192/363 (52%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+AL  NW ++NA S ++ TAAVVK NAYGLG    A  L  AG + FFV   EEG
Sbjct: 6   LTIDLSALAANWRNLNARS-DSETAAVVKANAYGLGLRTAASVLAQAGARHFFVAVAEEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR +     +I V  G   G   +I D  L P+I+S+ QL  + + +     H + +Q
Sbjct: 65  AALREVLGTGPQISVFSGHMEGDTPLIRDAGLTPMINSIDQLIRHVEALP---DHDFGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+   E       +  +     SL++SHLACAD+PS  +N  QL+ F  + +
Sbjct: 122 LDTGMNRLGMEDAEWRSVREVATQRPP---SLVMSHLACADEPSHQMNRQQLDCFIEM-T 177

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
           H      SLA++ G+L+G +YHF LTRPGI LYGG   ++       VV  +  +I +R 
Sbjct: 178 HDISAPRSLAATGGLLMGSDYHFDLTRPGIGLYGGLPFVDA----LPVVQLDVPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y         + IA  + GYADG    +    + H+  V            V
Sbjct: 234 VHPGETVGYANTWTAAAPARIATISAGYADGLIRAMGAKANLHAGDV-----------AV 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+++MD+   D+T +LS +  + +Q+ G    +D VA  + T  Y++L  +G RY +
Sbjct: 283 PVVGRVSMDLIGVDVT-ALSADP-ESLQLIGRHQSVDTVADFADTIGYEILTSLGERYKR 340

Query: 368 FYT 370
            YT
Sbjct: 341 VYT 343


>gi|240851017|ref|YP_002972417.1| alanine racemase [Bartonella grahamii as4aup]
 gi|240268140|gb|ACS51728.1| alanine racemase [Bartonella grahamii as4aup]
          Length = 371

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 193/363 (53%), Gaps = 14/363 (3%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID++A+  N+ ++       + +AVVK NAYGLG  KIAPALY AG + FFV  + E ++
Sbjct: 20  IDVSAIVANYITLAKRVAPTQCSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIIEALQ 79

Query: 71  LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           L+   P    I VL G+    E+ +  + ++PV++S   +  + K+        P  +Q+
Sbjct: 80  LKSILPSHVTIAVLNGLPHLAEEFVAQSGIVPVLNSWSAIENWQKICQKKDKKFPAIVQI 139

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DT  NRLGL  +E      +    +  ++  I+SHL+  +D +   N  QL  F+T+++ 
Sbjct: 140 DTHMNRLGLDQKELQKLIKHPTIFEKAEIKYILSHLSNGEDDTHPSNYAQLATFKTVLAQ 199

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
               + S A+S GI LG +++F L RPGI+LYG   +     P++ V+  EA++I  R  
Sbjct: 200 LPACKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPRGKHPSPLKPVLKLEAQVIQNRVV 259

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
             G  V YG      R S +A  +IGYADG+   LS             G  +  GY +P
Sbjct: 260 DIGTPVGYGESFITNRPSTLATISIGYADGWLRALSN-----------KGTVYFNGYKLP 308

Query: 309 ILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++G+++MD  + D TD     + GD++++ GP   L+ V++ + T   ++L  +G+RY  
Sbjct: 309 MVGRVSMDSIIVDTTDLDQKPQTGDWVELIGPHQTLERVSIDADTLPNEILTSLGSRYKY 368

Query: 368 FYT 370
            YT
Sbjct: 369 IYT 371


>gi|114769303|ref|ZP_01446929.1| alanine racemase [alpha proteobacterium HTCC2255]
 gi|114550220|gb|EAU53101.1| alanine racemase [alpha proteobacterium HTCC2255]
          Length = 351

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 192/370 (51%), Gaps = 41/370 (11%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           LKID  A+ NNW S++  S  N  TAAV+K +AYGL  + IA  L    V+ FFV   EE
Sbjct: 11  LKIDTNAIYNNWQSLDKKSAKNVETAAVIKADAYGLSTKNIASYLAFKNVKTFFVAIAEE 70

Query: 68  GVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G+  R      A IFV  G       II + NLIP+++S  Q   Y +      +  + +
Sbjct: 71  GIGARKAVGNDADIFVFSGQMENDAAIIKEYNLIPLLNSADQ---YHQFQINSPNQKFGI 127

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLG+   E ++F+  S ++ +    LI+SHLACAD+P+   N  QL  F  L 
Sbjct: 128 QLDTGMNRLGM---EGIEFS--SLDENMSNACLIMSHLACADEPNHSQNLKQLRTFHHLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---VVTAEARII 243
              K I  SL+++ GILLGP YHF L RPGI LYGG        P  T   V+     +I
Sbjct: 183 DDLK-IRKSLSATGGILLGPEYHFDLCRPGIGLYGGL-------PYDTALPVIKLSIPVI 234

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R   AGE V YGGQ +   D+ +A  + GYADG    +          ++ G  G   
Sbjct: 235 QSRTVFAGETVGYGGQWRAKTDTRVATISAGYADGLIRAI----GNGQLLLYHGDVG--- 287

Query: 304 GYMVPILGKITMDMTMFDITD----SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
               P++G+++MD+   DIT       S+++ + IQ       +D +A A+ T  Y++L 
Sbjct: 288 ---CPLIGRVSMDLITVDITQLEDTPRSLDLINKIQ------TVDIIANAANTIGYEILT 338

Query: 360 RIGTRYAKFY 369
            +G RYA+ Y
Sbjct: 339 SLGARYAREY 348


>gi|258543551|ref|YP_003188984.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634629|dbj|BAI00605.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637685|dbj|BAI03654.1| alanine racemase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640739|dbj|BAI06701.1| alanine racemase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643794|dbj|BAI09749.1| alanine racemase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646849|dbj|BAI12797.1| alanine racemase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649902|dbj|BAI15843.1| alanine racemase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652892|dbj|BAI18826.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655946|dbj|BAI21873.1| alanine racemase [Acetobacter pasteurianus IFO 3283-12]
          Length = 381

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 191/367 (52%), Gaps = 17/367 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ++L+A+  N+  + +  G    AAVVK +AYGLG  ++AP L  AG + FFV  V+EG
Sbjct: 24  LTVNLSAIAENYRYLKSRLGKTACAAVVKADAYGLGVAQVAPVLEKAGAEHFFVAHVDEG 83

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YA 125
           + LR + +P   + VL+G  P   ++    NL PV++S+ Q+     L +  +  P   A
Sbjct: 84  LALRPFLSPHTSVTVLHGPRPDAAEVCVRNNLRPVLNSLEQVAVLRDL-AAKMDKPLDVA 142

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+DTG +R GLS  +      +    K   +SL++SHLACAD P +  N++Q ERF   
Sbjct: 143 IQLDTGMSRFGLSEADIHKLVASPELLKGLFVSLVMSHLACADTPQNPANTMQRERFEAY 202

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                    SL++SSGI LGP +HF L RPG +LYG   +    +P++ VV  +A I+ I
Sbjct: 203 ARILPQAALSLSASSGIFLGPQFHFDLVRPGAALYGVAPQNEGDNPLKPVVGLQAHILQI 262

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ V YG   +      +A  A GYA              + +    G  + KGY
Sbjct: 263 RHLSKGDRVGYGLTWQAHGPCRVATIATGYA-----------DGFARAGAAAGCAWYKGY 311

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            +PILG+I+MD    D++      +E    +++      +D VA A GT  Y++L  +G 
Sbjct: 312 RLPILGRISMDSMTVDLSAVPEGLLEEDSMVELLNESYGVDAVAKAEGTIGYEVLTSLGR 371

Query: 364 RYAKFYT 370
           RY + Y 
Sbjct: 372 RYHRVYA 378


>gi|56552488|ref|YP_163327.1| alanine racemase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260753846|ref|YP_003226739.1| alanine racemase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56544062|gb|AAV90216.1| alanine racemase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258553209|gb|ACV76155.1| alanine racemase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 349

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 188/369 (50%), Gaps = 23/369 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  +  LRL++D +AL  NW S+N ++      A +K N YGLG E++   L  AG +DF
Sbjct: 1   MQISSPLRLELDKSALMANWQSLNRITAG-HCGAAIKANGYGLGAERVRHYLAQAGCRDF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           FV+S +E   L        + VL+G+         ++++ PV+ S   +   ++  +   
Sbjct: 60  FVSSWDEARLLDSSEKDFSLSVLHGLREDDLGYALNSSVKPVLCSPAMI---ARWKAHAP 116

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + P  + VDTG NRLGLS++EA     +  +     +  I+SHLACAD+    +N  QLE
Sbjct: 117 NRPCDVMVDTGMNRLGLSMEEAGSGLLDGLS-----IDNILSHLACADEADHPLNQKQLE 171

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           RFR L +  +    SLA+S+GI L  +YHF L RPG++LYGG         ++ VV   A
Sbjct: 172 RFRILAARKQAKRYSLANSAGIFLSKDYHFDLARPGLALYGGLPVPQSKDILKPVVAIAA 231

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           + I +R+  AGE + YG      +   +A+  +GYADGY             + F  G  
Sbjct: 232 QAIQVREVSAGEAIGYGACFVTPKKMRVAILHVGYADGY-----------WRAFFEKGHA 280

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
              G + P+ G+++MDM    + D L+   GD+   F  D  L   +  +G + Y+LL  
Sbjct: 281 RKDGVICPLAGRVSMDMITVALPDVLTAHEGDW---FSVDFDLPSASQQTGLSQYELLTG 337

Query: 361 IGTRYAKFY 369
           +G RY   +
Sbjct: 338 LGHRYQSVW 346


>gi|157803277|ref|YP_001491826.1| alanine racemase [Rickettsia canadensis str. McKiel]
 gi|166969427|sp|A8EXF8|ALR_RICCK RecName: Full=Alanine racemase
 gi|157784540|gb|ABV73041.1| alanine racemase [Rickettsia canadensis str. McKiel]
          Length = 355

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 191/367 (52%), Gaps = 23/367 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L I+L+A+KNN+  +  +   +   AVVK + YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   LAINLSAIKNNYFLLQDICKTSLVGAVVKADGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V +R        I VL G+       + + NLIP+++++ Q+  + +  +   +  P  L
Sbjct: 66  VNVRKALGIDVNILVLNGVFEHDALELIEYNLIPILNNLKQIEIWQQFGNLKNLLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     +N    K   L  IISHLA +++  +  N  QL +F+  +
Sbjct: 126 HFNTGINRLGLSSNEIEQLINNRDLLKGLNLQYIISHLAISEEIDNPYNLEQLNKFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVVTAEARIILI 245
            ++  I+ASLA+S GI LG +YHF L RPG +LYG        +P MQ  VT +A II +
Sbjct: 186 RYFPSIKASLANSGGIFLGQDYHFDLVRPGAALYG-------LNPLMQNPVTLKAPIIHL 238

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +       + Y       RDS+IA   +GYADGY    S             GK FI G 
Sbjct: 239 QNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGYSRNFSN-----------QGKVFINGR 287

Query: 306 MVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VPI+G+++MD+   D+TD     I +G  ++I G     D +A   GT  Y++L  +G 
Sbjct: 288 SVPIVGRVSMDLINIDVTDLPPSDIFLGQEVEIIGNHCTPDKIASIIGTIGYEVLTSLGN 347

Query: 364 RYAKFYT 370
           RY + YT
Sbjct: 348 RYRRKYT 354


>gi|83952042|ref|ZP_00960774.1| alanine racemase [Roseovarius nubinhibens ISM]
 gi|83837048|gb|EAP76345.1| alanine racemase [Roseovarius nubinhibens ISM]
          Length = 345

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 190/362 (52%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A   NW +++A + +  TAAVVK +AYGLG +K+A AL  AG + FFV   EEG
Sbjct: 6   LTIDLNAAVANWRALDAKT-DCETAAVVKADAYGLGADKLARALARAGARSFFVAVAEEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR    P   I V  G  PG   +I D  L P+I+S+ Q+  + + +     H + LQ
Sbjct: 65  AALRQALGPGPNICVFSGHMPGDADMIGDLELTPMINSLDQMIRHVEALP---GHAFGLQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+   E       +  +      LI+SHLACAD+P   +N+ QL  FR +  
Sbjct: 122 LDTGMNRLGMEPSEWAAVRDVALAQN---PVLIMSHLACADEPDHPMNAQQLRTFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ G+LLG +YHF L RPGI  YGG       H    V T +  +I  R 
Sbjct: 179 GLD-VPRSLANTGGVLLGRDYHFDLCRPGIGTYGGAPFAEARH----VATLDIPVIQCRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG     +R + IA  + GYADG    +        P   L    +  G  +
Sbjct: 234 VAPGETVGYGNSYVASRPTRIATISAGYADGILRAM-------GPKTGL----WCDGKRL 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI G+I+MD+   D+T +L  +    +Q+ GP+  +D +A A+GT  Y++L  +G RY +
Sbjct: 283 PIAGRISMDLIGVDVT-ALGQDP-KSLQLLGPNQGVDTLADAAGTIGYEILTSLGARYTR 340

Query: 368 FY 369
            Y
Sbjct: 341 RY 342


>gi|148255205|ref|YP_001239790.1| putative alanine racemase (alr) [Bradyrhizobium sp. BTAi1]
 gi|146407378|gb|ABQ35884.1| putative alanine racemase (alr) [Bradyrhizobium sp. BTAi1]
          Length = 394

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 185/367 (50%), Gaps = 15/367 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  A  A V+K +AYG G  ++A  L  AG + FFV ++ E 
Sbjct: 28  LTIDLDALAANWRKLEKTAVPAECAGVIKADAYGCGIPQVARTLAAAGCKTFFVATLSEA 87

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHPY 124
              R   P  A ++VL G      +     N  PVI  + +L  +   M C   G     
Sbjct: 88  KVARTALPDSAALYVLDGFFQNTGEDYAAINCRPVIGDLNELAEWD--MFCRRTGWKGGA 145

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           A+ VDTG NRLG +  +A        +   G ++LI+SHLA A+  +S  N+ QL  FR 
Sbjct: 146 AIHVDTGMNRLGFTPTDAQGMIPRIQSGDHG-ITLIMSHLASAEQLNSPSNARQLSLFRE 204

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           + S + G+ A+LA+SSGI LG  + F + RPG +LYG        +PMQ V   +ARI+ 
Sbjct: 205 VASVFTGVPAALAASSGIFLGAAFQFDMVRPGAALYGINPTPEADNPMQPVAEIKARIVQ 264

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R    G+ V YGG     R + IA+ + GYADGY    S  D      V + G+     
Sbjct: 265 LRDLARGDTVGYGGTWTARRPTKIAILSAGYADGYFRAASSNDGTRGADVVIAGQ----- 319

Query: 305 YMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
              P+ G+++MD+   D+TD    +   G +  + G  I +D++A   GT  Y+++  +G
Sbjct: 320 -RCPVAGRVSMDLIAVDVTDLPPKAARRGHFATLLGEGITVDELAHHFGTIGYEVMTNLG 378

Query: 363 TRYAKFY 369
            RY + Y
Sbjct: 379 RRYHRIY 385


>gi|86137544|ref|ZP_01056121.1| alanine racemase [Roseobacter sp. MED193]
 gi|85825879|gb|EAQ46077.1| alanine racemase [Roseobacter sp. MED193]
          Length = 345

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 193/366 (52%), Gaps = 31/366 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+L AL  NW ++NA++ N  TAAVVK N YGL   ++A AL   G ++FFV + EE
Sbjct: 5   RLTINLDALVTNWQNLNAMT-NCETAAVVKANGYGLDAARVATALAKGGARNFFVAAAEE 63

Query: 68  GVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           GV L R   P   I V  G   G  +++ +  L P+++S+ Q+  + + +     H + +
Sbjct: 64  GVALRRALGPGPGISVFSGHMEGDTRLLKEFQLAPMLNSLDQMLRHFETLP---GHTFGV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTL 185
           Q+D+G NRLG+   E         +  LGQ   L++SHLAC+D+P   +N+ QL+ FR +
Sbjct: 121 QLDSGMNRLGMEPAEWAAVR----DIALGQAPVLLMSHLACSDEPGHPMNAQQLQAFREM 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
               + +  SLA++ GILLG +YHF L RPG+ LYGG      + P   VV  +  +I  
Sbjct: 177 TDGLE-VPRSLAATGGILLGRDYHFDLCRPGVGLYGGA-PYGDAMP---VVQLDLPVIQT 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY--PLTLSGLDSEHSPSVFLGGKGFIK 303
           R    GE V YG        S IA  A GYADG    L   G+D             F  
Sbjct: 232 RDVAPGESVGYGNSWVAQVPSRIATVAAGYADGLHRALMTGGIDL------------FAG 279

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
               P++G+I+MD+   D+T +L  E    + I      +D +A A+GT  Y++L  +G 
Sbjct: 280 EARCPVVGRISMDLVTVDVT-ALP-ETPASLSILNEVQTVDTLANAAGTIGYEMLTSMGH 337

Query: 364 RYAKFY 369
           RYA+ Y
Sbjct: 338 RYARTY 343


>gi|126727196|ref|ZP_01743033.1| alanine racemase [Rhodobacterales bacterium HTCC2150]
 gi|126703624|gb|EBA02720.1| alanine racemase [Rhodobacterales bacterium HTCC2150]
          Length = 348

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 191/363 (52%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           LKIDL A+  NW +++A+S G+  TAAVVK +AYGLG   +A  L  AG   FFV + EE
Sbjct: 6   LKIDLNAIARNWRALDAMSAGDVETAAVVKADAYGLGIGPVAKILAKAGAHTFFVATAEE 65

Query: 68  GVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G   R+     A I V  G   G    I D +L+P+++S+ QLT + + +    S  + +
Sbjct: 66  GAAARVALGNDAIINVFSGHMAGDTTTIRDFHLMPMVNSIEQLTRHLENLP---SFQFGI 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G NRLG+   E       + +      +LI+SHLACADDP+   N+ QL +FR + 
Sbjct: 123 QLDSGMNRLGMEPHEWSAVASLALSSD---PTLIMSHLACADDPAHPQNADQLSQFRAIT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +    +  SLA++ G LLGP +HF +TRPG+ LYGG    +     Q VV     +I  R
Sbjct: 180 AGLD-VPLSLAATGGTLLGPAFHFSMTRPGVGLYGGFPYSDA----QAVVRLSLPVIQTR 234

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   GE V Y    +  R S IA  + GYADG    LS      + ++   G        
Sbjct: 235 EVAVGETVGYSASWRAERPSKIATLSAGYADGITRALS------NAAILYAGD-----TP 283

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P+ G+++MD+   D+  S   ++  ++ +  P   +D VA   GT  Y++L  +G RY 
Sbjct: 284 CPLAGRVSMDLLTVDV--SHLDQMPSHLDLLCPAQTVDQVAELGGTIGYEILTSLGHRYE 341

Query: 367 KFY 369
           + Y
Sbjct: 342 RQY 344


>gi|329890838|ref|ZP_08269181.1| alanine racemase [Brevundimonas diminuta ATCC 11568]
 gi|328846139|gb|EGF95703.1| alanine racemase [Brevundimonas diminuta ATCC 11568]
          Length = 378

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 200/368 (54%), Gaps = 17/368 (4%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+ + L A+  N+ +M      A  AAVVK +AYGLG  +IAPALY+AG + FFV  + E
Sbjct: 22  RIHVSLRAVAANYRAMCDQVAPAACAAVVKADAYGLGAARIAPALYDAGCRAFFVAHLFE 81

Query: 68  GVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            V LR   P  A +FVL G+ PG E        IPV++S  Q+  +++L  + G     A
Sbjct: 82  AVDLRRVLPADAELFVLNGLAPGAEYAALAAGAIPVLNSREQVEGWARLGRAVGRPLAAA 141

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q DTG +RLGL  ++A          +  +  LI+SHLA AD P    N+ Q + F  +
Sbjct: 142 IQFDTGMSRLGLPPEDAAWAFAPEGPIRWIEPRLILSHLAVADTPGHAGNARQRQAFERI 201

Query: 186 ISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           ++H  +G+  SLA+S+G  LG +YH+ L R G +L+ G D  + +  MQ VV    R+I 
Sbjct: 202 LAHAPQGVARSLANSAGCWLGQDYHYDLCRVGAALF-GLDASSSAKAMQPVVEVTGRVIQ 260

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R   AG  V YG          +A   +GYADG+P  LS           +GG  F +G
Sbjct: 261 TRAVPAGAGVGYGWAVTAAEGMRLATIGVGYADGWPRQLSA----------VGGAAF-EG 309

Query: 305 YMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            ++P +G+I+MD  + D++     +++ GD++++ GP+   + +AL   T +Y+++ R+G
Sbjct: 310 RLLPFVGRISMDSLVVDVSALPPDALKPGDHVELLGPNRPPEQLALEGATIDYEVIARLG 369

Query: 363 TRYAKFYT 370
            R  + Y 
Sbjct: 370 RRLCREYV 377


>gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillum seropedicae SmR1]
 gi|300076027|gb|ADJ65426.1| alanine racemase protein [Herbaspirillum seropedicae SmR1]
          Length = 368

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 196/379 (51%), Gaps = 23/379 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +     L IDL A+  NW +++A    AR  AVVK +AYGLG   +  AL +AG ++F
Sbjct: 1   MSTQPTASLTIDLPAIVANWKTLSARVAPARCGAVVKADAYGLGATMVVRALLDAGCREF 60

Query: 61  FVTSVEEGVKLR-----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---Y 112
           FV  V EGV L+      +   AR+ +L G  PG E +     L PV++S+ Q+     Y
Sbjct: 61  FVALVSEGVSLKQTLADRWPKGARLHILNGTLPGDELLCLHYGLTPVLNSLEQVRSWQGY 120

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
           ++ +   ++   ALQVDTG  RLGL+  E    T +         + ++SHL  A++ ++
Sbjct: 121 ARQLDFPLA--AALQVDTGMARLGLAPAEVAQLTESRAGLAGIAPTFLMSHLVSAEETAN 178

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
            +N  QLERF  +  H+  I   LA+SSGI LG ++HF   RPG +LYG        +PM
Sbjct: 179 PLNQHQLERFVAIRRHWPEIAGCLANSSGIFLGADFHFGCVRPGAALYGVHPGGAGPNPM 238

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+  +A +I  R+  AGE V Y    + +R + +   A+GYADGY      L S  + 
Sbjct: 239 RPVLRLQAPLIQWRELQAGESVGYNHTWQASRPTRVGTIALGYADGY------LRSASNR 292

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALAS 350
            V       ++G   P++G+++MD    D++  D   +  G    +      ++ +A+ +
Sbjct: 293 GVL-----RLEGVEAPLIGRVSMDSITVDLSAIDPARLRPGLLFDVLDAQQDINALAVQA 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT  Y++L  +  RY + Y
Sbjct: 348 GTNAYEILTSLRHRYRRHY 366


>gi|329113263|ref|ZP_08242046.1| Alanine racemase, catabolic [Acetobacter pomorum DM001]
 gi|326697404|gb|EGE49062.1| Alanine racemase, catabolic [Acetobacter pomorum DM001]
          Length = 381

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 196/370 (52%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ++L+A+  N+  + +  G    AAVVK +AYGLG  ++AP L  AG + FFV  V+EG
Sbjct: 24  LTVNLSAIAENYRYLKSRLGKTVCAAVVKADAYGLGVAQVAPVLEKAGAEHFFVAHVDEG 83

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YA 125
           + LR Y +    + VL+G  P   ++    NL PV++S+ Q+    +L +  +  P   A
Sbjct: 84  LALRPYLSSTTSVTVLHGPRPDAAEVCVRNNLRPVLNSLEQIAVLREL-AAKIDKPLDVA 142

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ---LSLIISHLACADDPSSHVNSVQLERF 182
           +Q+DTG +R GLS  EA D    + + +L +   +SL++SHLACAD P +  N++Q ERF
Sbjct: 143 IQLDTGMSRFGLS--EA-DIHKLAVSPELLEGLSVSLVMSHLACADTPKNPANTMQRERF 199

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
                       SL++SSGI LG  + F L RPG +LYG   +    +P++ VV  +A I
Sbjct: 200 EAYARMLPKATLSLSASSGIFLGSQFQFDLVRPGAALYGVAPQNEGENPLKPVVGLQAHI 259

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + IR    G+ V YG   +      +A  A GYA              + +    G  + 
Sbjct: 260 LQIRHLSKGDRVGYGLTWQAHGPCRVATIATGYA-----------DGFARAGAAAGCAWY 308

Query: 303 KGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           KGY +PILG+I+MD    D+++     +E    +++      +D VA A GT  Y++L  
Sbjct: 309 KGYRLPILGRISMDSMTVDLSEVPEGLLEEDSMVELLNASYGVDAVAKAEGTIGYEVLTS 368

Query: 361 IGTRYAKFYT 370
           +G RY + YT
Sbjct: 369 LGRRYHRVYT 378


>gi|163868814|ref|YP_001610040.1| hypothetical protein Btr_1758 [Bartonella tribocorum CIP 105476]
 gi|161018487|emb|CAK02045.1| Alanine racemase [Bartonella tribocorum CIP 105476]
          Length = 371

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 188/363 (51%), Gaps = 14/363 (3%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID++A+  N+ ++         +AVVK NAYGLG  KIAPALY AG + FFV  + E + 
Sbjct: 20  IDVSAIVANYITLAKRVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIREALH 79

Query: 71  LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           L+   P    I +L G+    E+ +  + ++PV++S   +  + K+        P  +Q+
Sbjct: 80  LKSILPSNVMIALLNGLPHLAEEFVAQSGIVPVLNSWNAIENWQKICQKKDKKFPAIVQI 139

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DT  NRLGL  +E           +   +  I+SHLA  +D +   N  QL  F+T+++ 
Sbjct: 140 DTHMNRLGLDQKELQKLIKRPTIFENANIKYILSHLANGEDNTHPSNDAQLTSFKTILAQ 199

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
                AS A+S GI LG +++F L RPGI+LYG       +  ++ V+  EA+++  R  
Sbjct: 200 LPPCRASFANSGGIFLGSDFYFDLVRPGIALYGSDPSGKHASLLKPVLRLEAQVLQNRVV 259

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
             G  V YG     +R S +A  +IGYADG+   LS             G  +  GY +P
Sbjct: 260 DIGTPVGYGETFITSRPSTLATISIGYADGWLRALSN-----------KGTVYFNGYKLP 308

Query: 309 ILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++G+++MD  + D TD     + GD+I++ GP   L+ VA  + T   ++L  +G+RY  
Sbjct: 309 MVGRVSMDSIIVDTTDLDQKPQTGDWIELIGPHQTLEKVATDANTLPNEILTSLGSRYRY 368

Query: 368 FYT 370
            YT
Sbjct: 369 IYT 371


>gi|110680421|ref|YP_683428.1| alanine racemase [Roseobacter denitrificans OCh 114]
 gi|123361723|sp|Q163V1|ALR_ROSDO RecName: Full=Alanine racemase
 gi|109456537|gb|ABG32742.1| alanine racemase [Roseobacter denitrificans OCh 114]
          Length = 344

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 189/365 (51%), Gaps = 30/365 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+AL  NW S+NALS +  TAAVVK NAYGLG    A AL  AG + FFV   EEG
Sbjct: 6   LTIDLSALAANWRSLNALS-DVETAAVVKANAYGLGVGTAASALAEAGARHFFVAVAEEG 64

Query: 69  VKLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           V LR      PQ  +F   G   G   +I D  L P+I+S+ Q+  + + +     H + 
Sbjct: 65  VALRQALGAGPQISVF--SGHMAGDTALIRDAGLTPMINSIDQMIRHVEALP---EHDFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+DTG NRLG+   E       +  +     SL++SHLACAD+PS  +N  QL+ F  +
Sbjct: 120 IQLDTGMNRLGMEDGEWRAVREVATQRPP---SLVMSHLACADEPSHQMNRQQLDCFVEM 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                    SLA++ GIL+GP+YHF LTRPGI LYGG   ++       VV  +  +I +
Sbjct: 177 TQDITAPR-SLAATGGILMGPDYHFDLTRPGIGLYGGLPFVDA----LPVVQLDVPVIQV 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V Y      T  + IA  + GYADG    +      H+    L         
Sbjct: 232 RDVHPGETVGYANTWTATAPARIATISAGYADGLIRAMGAKARLHAGDTAL--------- 282

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++G+++MD+   D+T   S    D +Q+ G    +D VA  + T  Y++L  +G RY
Sbjct: 283 --PVVGRVSMDLIGVDVTALGSDP--DSLQLIGRHQSVDTVAGFADTIGYEILTSLGDRY 338

Query: 366 AKFYT 370
            + YT
Sbjct: 339 KRVYT 343


>gi|85703131|ref|ZP_01034235.1| alanine racemase [Roseovarius sp. 217]
 gi|85672059|gb|EAQ26916.1| alanine racemase [Roseovarius sp. 217]
          Length = 345

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 185/362 (51%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW +++A++    TAAVVK +AYGLG  K+A +L  AG + FFV   EEG
Sbjct: 6   LTIDLDAITANWRALDAMTAG-ETAAVVKADAYGLGAAKVARSLARAGARHFFVAVAEEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR        I+V  G  PG   +I D +L P+I+S+ Q+  + + +     HP+ +Q
Sbjct: 65  AALRDTLGSGPAIYVFSGHMPGDADMIGDMHLTPMINSLEQMIRHVESLP---GHPFGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G NRLG+   E       +  +      LI+SHLACAD+    +N  QL  FR +  
Sbjct: 122 LDSGMNRLGMEPGEWAALRDIALAQ---DPRLIMSHLACADESDHAMNPQQLATFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GILL   YHF L RPGI LYGG          + VVT +  +I  R 
Sbjct: 179 GLD-VPRSLANTGGILLDAAYHFDLARPGIGLYGGRPFAEA----RAVVTLDIPVIQCRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y       R++ IA  A GYADG    +        P   L    + +    
Sbjct: 234 LAPGETVGYANGFTAPRETRIATVAAGYADGILRAM-------GPKTSL----WAEDIPC 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI G+I+MD+   DITD L  +    +Q+ GP   +D +A  + T  Y++L  +G RY +
Sbjct: 283 PIAGRISMDLICVDITD-LGHDP-KSLQLLGPYQSIDTLADHADTIGYEILTSLGARYTR 340

Query: 368 FY 369
            Y
Sbjct: 341 RY 342


>gi|159044921|ref|YP_001533715.1| alanine racemase [Dinoroseobacter shibae DFL 12]
 gi|226711041|sp|A8LRT3|ALR_DINSH RecName: Full=Alanine racemase
 gi|157912681|gb|ABV94114.1| alanine racemase [Dinoroseobacter shibae DFL 12]
          Length = 349

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 183/366 (50%), Gaps = 30/366 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNAR--TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L IDL A+  NW +++  S N R  T AVVK + YGL   ++A  L  AG + FFV   E
Sbjct: 6   LSIDLDAIAANWRALDRAS-NRRVATGAVVKADGYGLDAGRVARTLAQAGARQFFVAVAE 64

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EGV LR    P   I V  G   G  + I    L P+I+S  QL  + + +     HP+ 
Sbjct: 65  EGVTLRKALGPGPAINVFSGHMEGDTQAIAGARLTPMINSAEQLARHFEALP---RHPFG 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFRT 184
           +Q+DTG NRLG+   E       +    LGQ   L++SHLACAD+P    N+ QL  F  
Sbjct: 122 IQLDTGMNRLGMEADEWAAVAEFA----LGQGPKLVMSHLACADEPGHAANAAQLAEFHR 177

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           L      +  SL+++ GILLG  YHF +TRPGI LYGG      + P   VV     ++ 
Sbjct: 178 LTDGIT-VPRSLSATGGILLGEAYHFDMTRPGIGLYGGA-PFGAAEP---VVRLSIPVVQ 232

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R   AGE V YG       D  IA  + GYADG    +S     ++  V          
Sbjct: 233 VRAVTAGESVGYGCSWVAQSDGAIATLSAGYADGLIRAMSNRAMLYAGDV---------- 282

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              P+ G+++MD+   D+  S   EV + + +  P   +D +A A+GT  Y++L  +G R
Sbjct: 283 -ACPLAGRVSMDLLTVDV--SHLDEVPEALDLLCPAQGVDRLAEAAGTIGYEILTSLGPR 339

Query: 365 YAKFYT 370
           YA+ Y 
Sbjct: 340 YARHYA 345


>gi|91977460|ref|YP_570119.1| alanine racemase [Rhodopseudomonas palustris BisB5]
 gi|91683916|gb|ABE40218.1| alanine racemase [Rhodopseudomonas palustris BisB5]
          Length = 409

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 186/365 (50%), Gaps = 10/365 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  AAVVK +AYG G   ++ AL  AG + FFV ++ E 
Sbjct: 36  LTVDLDAIVANWRKIEKTAVPAEAAAVVKGDAYGCGIGPVSKALAAAGCKTFFVATLGEA 95

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQ 127
             +R   P A I+VL G            N  PVI  + +L  +         S   A+ 
Sbjct: 96  GAVRAIAPDAVIYVLDGFFQTTGDEFARLNCRPVIGDLYELAEWDVYCRRTRWSGGAAIH 155

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL++ EA            G ++L+ISHLA A+  +  +N+ Q+  FR + S
Sbjct: 156 IDTGMNRLGLTVAEAQGIVPRIAAGDHG-ITLVISHLAAAEALNHPMNARQVTAFREIAS 214

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSG+ LGP + F + RPG +LYG        +PM+ VV  +ARI+ +R 
Sbjct: 215 LFTGVAASLSASSGVFLGPQFAFDMVRPGAALYGINPTPEADNPMKPVVDLKARIVQVRS 274

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YGG     R + IAV + GYADGY       D      V       I G   
Sbjct: 275 VERGDSVGYGGTWTARRPTRIAVLSAGYADGYFRAAGSNDGTRGADV------VIAGQRC 328

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI G+++MD+   D+TD  + +   G    + G  I +D++    GT  Y++L  +G RY
Sbjct: 329 PIAGRVSMDLLAVDVTDLPANAARRGLMATLIGDGITVDELGHHFGTIGYEVLTSLGARY 388

Query: 366 AKFYT 370
           A+ Y+
Sbjct: 389 ARIYS 393


>gi|85542701|gb|ABC71322.1| alanine racemase [Acetobacter aceti]
          Length = 368

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 189/367 (51%), Gaps = 17/367 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L I+L+A+  N+  +    G    AAVVK +AYGLG  ++AP L   G + FFV  V+EG
Sbjct: 11  LTINLSAIAENYRYLVNKLGKTVCAAVVKADAYGLGVAQVAPILEQVGAKHFFVAHVDEG 70

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YA 125
           + LR Y +P   + VL+G  P   ++    NL PV++S+ Q+     L +  +  P   A
Sbjct: 71  LALRPYLSPHTSVTVLHGPRPDAAEVCVRNNLRPVLNSLKQVAVLRDL-AAKMDKPLDVA 129

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+DTG +R GLS  +           +   +SL++SHLACAD P +  N++Q ERF   
Sbjct: 130 IQLDTGMSRFGLSEADIHKLMATPELLEGLSVSLVMSHLACADTPENAANAMQRERFENY 189

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                    SL++SSGI LG  +HF L RPG +LYG   + +  +P++ VV  +  I+ I
Sbjct: 190 ARMLPKAALSLSASSGIFLGQPFHFDLVRPGAALYGVAPQNDGVNPLKPVVGLQTHILQI 249

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ V YG   + T    +A  A+GYA              + +    G  + KGY
Sbjct: 250 RTLSKGDRVGYGLTWQATGPCRVATIAVGYA-----------DGFARAGAAAGCAWYKGY 298

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            +PILG+I+MD    D++      +E    +++      +D VA A GT  Y++L  +G 
Sbjct: 299 RLPILGRISMDSMTVDLSAVPEGLLEEDSMVELLNESYGVDAVAKAEGTIGYEVLTSLGR 358

Query: 364 RYAKFYT 370
           RY + Y 
Sbjct: 359 RYHRVYA 365


>gi|331005749|ref|ZP_08329109.1| Alanine racemase [gamma proteobacterium IMCC1989]
 gi|330420438|gb|EGG94744.1| Alanine racemase [gamma proteobacterium IMCC1989]
          Length = 375

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 203/377 (53%), Gaps = 32/377 (8%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL+AL +NW  +   ++ + R AAVVK NAYGLG   +A  L+  G + FFV +++E
Sbjct: 7   LTIDLSALVDNWKLLQQKVAPSTRCAAVVKANAYGLGIAPVAKVLFANGCRVFFVATLDE 66

Query: 68  GVKLR--LYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKLMSCGV 120
           G++LR  L      I V  G+    EK +        +LIPV+ SV  ++ +  L S  V
Sbjct: 67  GIELRTLLAKSDCEIIVFGGLFYDTEKSLCSAAWLHYSLIPVLYSVEHISRW-LLFSSNV 125

Query: 121 SH--PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL--SLIISHLACADDPSSHVNS 176
               P  ++VDTG +R+GLS+ E   F     +  +G+L  S I+SH ACAD     +N 
Sbjct: 126 QKVLPSVVKVDTGMHRMGLSVGE---FNEQLLSDVMGRLQPSYIMSHFACADKSEHPLNR 182

Query: 177 VQLERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
            Q+  F   +    S    I+ S+ +S+GI L  +  + L RPGI+LYGG    +K +PM
Sbjct: 183 DQIMAFDDCLIKIKSRLPDIQVSMCNSAGIFLDGDIFYDLVRPGIALYGGNPSPSKPNPM 242

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + VV     ++ ++   +G+ V YG      +++ +A+ + GYADG    LS        
Sbjct: 243 RPVVKLTLGVMQLKVVASGDSVGYGASYIAQKETRLAIVSGGYADGLHRALSN------- 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                G  + KG  VPI+G+++MD  +FD+T+ +  E    I++ G    +DD+A A+GT
Sbjct: 296 ----AGFAYCKGQKVPIVGRVSMDTMVFDVTN-VPGEDPAMIEVLGECQTVDDLAQAAGT 350

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +G+R+ + Y
Sbjct: 351 IAYEILTSLGSRFQRNY 367


>gi|239947144|ref|ZP_04698897.1| alanine racemase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921420|gb|EER21444.1| alanine racemase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 354

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 184/365 (50%), Gaps = 21/365 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L+A+KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   LEINLSAIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRKALGVDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGL+  E     +N    K   L  IISHLA ++   +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLTHDEIEQLINNRDLLKGLDLQYIISHLAISEKIDNSYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            ++  ++ASLA+S GI LG +YHF L RPG +LYG       +  M+  V  +A II ++
Sbjct: 186 RYFPNVKASLANSGGIFLGQDYHFDLARPGAALYG------LNPVMKNPVNLKAPIIHLQ 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                  + Y       RDS+IA   +GYADGY    S             G+ FI G  
Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGYSCNFSN-----------QGEVFINGCS 288

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VPI+G+I+MD+   D+TD     I +G   +I G     D VA   GT  Y++L  +G R
Sbjct: 289 VPIVGRISMDLINIDVTDLPPSDIFLGQEAEIIGNHCTPDKVASIIGTIGYEVLTSLGNR 348

Query: 365 YAKFY 369
           Y + Y
Sbjct: 349 YKRIY 353


>gi|89054230|ref|YP_509681.1| alanine racemase [Jannaschia sp. CCS1]
 gi|122498888|sp|Q28RK6|ALR_JANSC RecName: Full=Alanine racemase
 gi|88863779|gb|ABD54656.1| alanine racemase [Jannaschia sp. CCS1]
          Length = 342

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 189/365 (51%), Gaps = 32/365 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL  N+ +++ L G   TAAVVK + YGLG   ++  L  AG   FFV + EEG
Sbjct: 6   LTVDLGALVANYRTLDRL-GPGATAAVVKADGYGLGAGLVSTGLAKAGACQFFVATAEEG 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR +  P   I V  G   G   +I D +L P+++S  Q+  +  ++     HPY +Q
Sbjct: 65  VGLRQVLGPAPEINVFAGHMAGDTPLIRDAHLTPMLNSPKQVQRHRHVLP---GHPYGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLG+   +  D+   +   +L   +L++SHLACAD P    N+ QL +FR L  
Sbjct: 122 LDTGMHRLGV---QPADWP--ALRDQLHDATLLMSHLACADAPDHPQNAAQLAQFRALTD 176

Query: 188 HYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
              GI+   SLA++ G L+GP+YHF L RPG+ LYGG          + VV     +I I
Sbjct: 177 ---GIQTPRSLAATGGTLMGPDYHFDLIRPGVGLYGGLPFAGA----RPVVRLSLPVIQI 229

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G  + YG     T    IA  + GYADG    LS      S +    G       
Sbjct: 230 RCVNPGATIGYGATYTATTPRQIATLSAGYADGLIRALS------SKATLWDGD-----T 278

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++G+++MD+   D+TD  +    + + I GP   +D +A A+GT  Y++L  +G RY
Sbjct: 279 PCPLVGRVSMDLLTVDVTDCDTPP--EALDILGPHQTIDQLAEAAGTIGYEILTSLGPRY 336

Query: 366 AKFYT 370
            +  T
Sbjct: 337 RRALT 341


>gi|94496351|ref|ZP_01302928.1| alanine racemase [Sphingomonas sp. SKA58]
 gi|94424097|gb|EAT09121.1| alanine racemase [Sphingomonas sp. SKA58]
          Length = 348

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 190/368 (51%), Gaps = 31/368 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL++D  AL +NW  +  +SG A   A +K N YGLG E++   L  AG +DFFV++  
Sbjct: 8   LRLRLDGDALVSNWRWLARMSGPAACGAAIKANGYGLGAEEVMRRLTRAGCRDFFVSNWG 67

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHP 123
           E + L  L     R+ VL+G+      I   +   PV+ +  Q+  +  +   SC V   
Sbjct: 68  EALALEPLMADGVRLSVLHGVRDEDMAIAVASRAKPVLCAPAQVARWRDAGQKSCDV--- 124

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERF 182
               +DTG NRLGL      D+  ++     G  +  ++SHLA AD+  + +N+VQ +RF
Sbjct: 125 ---MMDTGMNRLGL------DWRGDAAGMLAGLTIETVMSHLASADEEVA-LNAVQRDRF 174

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
             +         SLA+S+GI L  +Y F LTRPGI+LYGG      +  ++ VV  +A+I
Sbjct: 175 VQIALGVPAERYSLANSAGICLNADYRFDLTRPGIALYGGVPHAKAAGHIRQVVQPQAQI 234

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +  R+ +AG+ + Y       RD  +A+  +GYADGY    SG            G   +
Sbjct: 235 LQRRRLIAGDSIGYNATFTAERDHEVAILNLGYADGYLRGFSGT-----------GAASV 283

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  +P+LG+++MD+   D++    +  GD++ I   D  L   + ASG + Y+LL  +G
Sbjct: 284 AGVRLPVLGRVSMDLAAIDVSAVPGLSEGDWVDI---DYDLPRASAASGLSQYELLTGLG 340

Query: 363 TRYAKFYT 370
            RY + + 
Sbjct: 341 ARYDRLWA 348


>gi|90020561|ref|YP_526388.1| alanine racemase [Saccharophagus degradans 2-40]
 gi|89950161|gb|ABD80176.1| alanine racemase [Saccharophagus degradans 2-40]
          Length = 409

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 197/376 (52%), Gaps = 32/376 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +L I+L A+  NW  + +       A  V K +AYGLG +++APALY AG +DFFV ++ 
Sbjct: 46  KLTINLDAIAANWRLIQSRLAAGARAGAVVKADAYGLGVQEVAPALYRAGCRDFFVANLA 105

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM---SCGVSH 122
           E + +R L    A++ VL G  P +E       ++PVI+S      +  +     CG   
Sbjct: 106 EALLVRSLLAGDAQVIVLSGCAPREESEFVRNGIVPVITSATMAERWLGVKGASKCGA-- 163

Query: 123 PYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G  RLGL   E      H +F        +++SHLACAD     +N+ QL+R
Sbjct: 164 --VLKVNSGMGRLGLEPNEFESLLMHPNFAN--AGFFMLMSHLACADQFDHPLNAAQLQR 219

Query: 182 F----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           F    +  +       ASLA+SSGI + P++H+ + RPG++LYGG     + +PM+ VV 
Sbjct: 220 FERMRQAFLKKVPAATASLANSSGIFISPSFHYDVARPGVALYGGNPLQRRQNPMRKVVD 279

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               ++ +R   +GE V YG      R S++   A GYADG              S   G
Sbjct: 280 LRLPVLQVRHLASGEAVGYGASFITQRPSVLLTLAGGYADGL-----------FRSAAAG 328

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITD----SLSIEVGDYIQIFGPDIKLDDVALASGTT 353
           G  ++    +PI+G+++MD  + D TD    ++  E G+ +++ G ++ +DD+A A+GT 
Sbjct: 329 GVVYLGEKPLPIVGRVSMDSIVVDATDVPQAAMPAE-GNMLELLGDNVGVDDLAAAAGTI 387

Query: 354 NYDLLVRIGTRYAKFY 369
            Y++L  +G RY + Y
Sbjct: 388 GYEILTSLGGRYRREY 403


>gi|307292839|ref|ZP_07572685.1| alanine racemase [Sphingobium chlorophenolicum L-1]
 gi|306880905|gb|EFN12121.1| alanine racemase [Sphingobium chlorophenolicum L-1]
          Length = 348

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 188/365 (51%), Gaps = 27/365 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL+++  AL +NW  +    G     A +K + YGLG  ++   L +AG +DFFV++  
Sbjct: 8   LRLRMEEGALLSNWRWLKRQGGGVACGAAIKADGYGLGAAEVMRRLLDAGCRDFFVSNWA 67

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   L  L T +  + VL+G       +   +   PV+ +  Q+  + +        P  
Sbjct: 68  EAAVLESLVTEEVSLSVLHGAREEDMALALTSRARPVLCTEWQIARWKQ----AGGGPCD 123

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRT 184
           + VDTG NRLGL      D+  +   +  G +++ ++SHLA AD+    +   QLERF  
Sbjct: 124 VMVDTGMNRLGL------DWRGDVPARVAGLEVATLLSHLASADE-DGPLTPTQLERFSA 176

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           L    K    SLA+S+GI +G +Y F +TRPGI+LYGG  +   +  ++ VV  E +++ 
Sbjct: 177 LQGQVKAARYSLANSAGICMGSDYAFDMTRPGIALYGGVPRREAAGNIRQVVFPETQVLQ 236

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R+  AG+ + Y    +  +D  IAV  +GYADGY    SG  S  +            G
Sbjct: 237 RRRVRAGDTIGYNATYRAAKDMEIAVLNLGYADGYLRGFSGRGSMSA-----------GG 285

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             +P++G+I+MD+T  D+     I  GD++++   D KL D A  SG + Y+LL  +G R
Sbjct: 286 RHLPVVGRISMDLTAIDVGGLPDISEGDWLEV---DYKLADAAAVSGLSQYELLTGLGGR 342

Query: 365 YAKFY 369
           + + +
Sbjct: 343 FDRVW 347


>gi|91206154|ref|YP_538509.1| alanine racemase [Rickettsia bellii RML369-C]
 gi|157826544|ref|YP_001495608.1| alanine racemase [Rickettsia bellii OSU 85-389]
 gi|122425170|sp|Q1RGU4|ALR_RICBR RecName: Full=Alanine racemase
 gi|91069698|gb|ABE05420.1| Alanine racemase [Rickettsia bellii RML369-C]
 gi|157801848|gb|ABV78571.1| alanine racemase [Rickettsia bellii OSU 85-389]
          Length = 410

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 176/347 (50%), Gaps = 16/347 (4%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR-LYTPQARIFVLYGIH 87
           N    A VK N+YGLG  +I+  L     + FFV S  EG+ LR     +  I +L G+ 
Sbjct: 75  NLLVGAAVKANSYGLGAIEISKTLLEENCRYFFVASSNEGISLRKAIGDEVNILILNGVF 134

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFT 146
                 + + NLIPV++++ Q+  + K  +      P  L  +TG NRLGL+  E     
Sbjct: 135 EHDALELIEYNLIPVLNNLNQIKIWQKFSNLKNQLLPCYLHFNTGINRLGLNHNEIEQLI 194

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGP 206
           +N    K   +  IISHL+ ++D  +  N  QL +F+  + ++   +ASLA+S GI LG 
Sbjct: 195 NNRDLLKGLNVEYIISHLSASEDSDNPYNLEQLNKFKAYLEYFPNAKASLANSGGIFLGK 254

Query: 207 NYHFQLTRPGISLYG-GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
           +YHF L RPG +LYG      NK +PMQ  VT +A II ++    G  + Y       RD
Sbjct: 255 DYHFNLVRPGAALYGLNPLGSNKPNPMQNPVTLKAPIIHLQNLTYGSRIGYNMTFTTKRD 314

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD- 324
           SLIA    GYADG+    S             G  FI    VPI+G+I+MD+   D+TD 
Sbjct: 315 SLIATLPFGYADGFSRNFSN-----------QGTVFINSRNVPIIGRISMDLVNIDVTDL 363

Query: 325 -SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
               I +G  ++I G +   D +A   GT  Y++L  +G RY + YT
Sbjct: 364 PPSDIFLGQEVEIIGNNCTPDKIADIIGTIGYEILTSLGNRYKRIYT 410


>gi|332185497|ref|ZP_08387245.1| alanine racemase [Sphingomonas sp. S17]
 gi|332014475|gb|EGI56532.1| alanine racemase [Sphingomonas sp. S17]
          Length = 342

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 188/364 (51%), Gaps = 32/364 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL+ID  AL++NW +++ LSG A   A VK N YGLG   +A AL  AG +DFFV +  
Sbjct: 7   LRLRIDRDALQSNWQALDRLSGTAACGAAVKANGYGLGATLVAKALAEAGCRDFFVANWA 66

Query: 67  EGVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHP 123
           E + L    P    + VL+G+     ++       PV+S+  Q+  +       C V   
Sbjct: 67  EALAL---APLGLTVSVLHGLRADDVEVARAGFARPVLSTPEQIARWRDSGGGLCDV--- 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
               VDTG NRLG+S++       +       Q+  ++SHLACAD+    +N+ Q   F 
Sbjct: 121 ---MVDTGMNRLGVSVEAVTGGLLDGL-----QIETLLSHLACADE-DVPMNARQQAAFA 171

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            L         SLA+S+GI LG +Y F LTRPG++LYGG  + + +  ++ V   EA+I+
Sbjct: 172 GLKGQTGARRMSLANSAGIGLGADYRFDLTRPGLALYGGVPRPDMAQHLRQVAWPEAQIL 231

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R   AGE V Y        D+ +A+  +GYADGY   LSGL           G   + 
Sbjct: 232 QRRHVPAGETVGYNATWTAPADTEVAILNLGYADGYRRALSGL-----------GAAVVD 280

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  +P+LG+++MD+   ++T    +  GD++ +   D  L   + ASG + Y+LL  +  
Sbjct: 281 GVKLPVLGRVSMDLLAINVTARADLAEGDWLSM---DYDLAAASAASGVSQYELLTGLAQ 337

Query: 364 RYAK 367
           R+A+
Sbjct: 338 RFAR 341


>gi|319780958|ref|YP_004140434.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166846|gb|ADV10384.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 379

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 179/366 (48%), Gaps = 17/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A++ N+  + A  G+   A V+K + YGLG  ++  AL   G   FFV  + EG
Sbjct: 25  LTIDLGAIRENYRRLKARLGDVACAGVLKADGYGLGAGQVGAALLREGCDIFFVALLGEG 84

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        IFVL GI PG E      NL  VI+S  QL  +           P A+
Sbjct: 85  VALRRSLGAGPAIFVLNGIPPGAETDAVAANLCAVINSPEQLAAWRSAARRAGRKLPAAV 144

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVD+G +RLG++ ++      +        +  ++SHLACAD+P    N  Q   F  L 
Sbjct: 145 QVDSGMSRLGMAPRDVDRIAADPQAFDGIDIRYVMSHLACADEPEHPANEKQRSVFERLR 204

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +      ASL +SSGI LGP++H+ L RPG +LYG      KS+PM  VV  +A++   R
Sbjct: 205 AMLPKAPASLTNSSGIFLGPSFHYDLARPGAALYGINPTPPKSNPMLPVVRLQAKVAQTR 264

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YG          +A  + GYADG+    +                + +G  
Sbjct: 265 SVEKGAGVGYGHSYHAQGPLRLATISFGYADGWQRRAA-------------SAAWFEGVR 311

Query: 307 VPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +P +G+++MD  + DI+   +  +  GD +++ GP   +DD A  +GT  Y++L  +G R
Sbjct: 312 LPFVGRVSMDSIILDISALPAGRLREGDLVELLGPSQSVDDAAGHAGTIGYEILTSLGPR 371

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 372 FHRRYV 377


>gi|103486714|ref|YP_616275.1| alanine racemase [Sphingopyxis alaskensis RB2256]
 gi|98976791|gb|ABF52942.1| alanine racemase [Sphingopyxis alaskensis RB2256]
          Length = 348

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 189/365 (51%), Gaps = 25/365 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL++D  AL  NW  +    G A   A +K + YGLG   +   L  AG +DFFV +  
Sbjct: 8   LRLRLDSDALIANWRWLAGQGGAAACGAAIKADGYGLGARWVMERLAAAGCRDFFVATWA 67

Query: 67  EGVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   L +  PQ   + VL+G+              PV++SV Q+    +    G   P  
Sbjct: 68  EAAAL-MPLPQGISVSVLHGVGAADMVAARLLPARPVLNSVEQV---QRWRDSGEGRPCD 123

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + VDTG NRLGL ++E +    +        + +++SHLA AD+     N+ QL  FR+L
Sbjct: 124 VMVDTGMNRLGLRVEEVMGGALDGL-----AIDILLSHLASADEDCGQ-NAAQLASFRSL 177

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
               +    SLA+S+GI LG +Y F LTRPGI+LYGGT +      ++ VV  E R++ +
Sbjct: 178 RETIRARRYSLANSAGICLGADYAFDLTRPGIALYGGTPRREAQGHIRQVVYPETRVLQL 237

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AGE V YG     + D+ +AV  +GYADGY    +G            G    +G 
Sbjct: 238 REVRAGESVGYGATWTASTDTRVAVTNMGYADGYLRCHAG-----------SGGATWRGQ 286

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            +P++G+++MD+T FD + +  +   D++ I   +  L   A ASG + Y+LL  +G+R+
Sbjct: 287 SLPLIGRVSMDLTAFDASSTEGLREDDWLAI---EYDLPTRAAASGLSQYELLTGLGSRF 343

Query: 366 AKFYT 370
            + +T
Sbjct: 344 GRGWT 348


>gi|157825267|ref|YP_001492987.1| alanine racemase [Rickettsia akari str. Hartford]
 gi|166969426|sp|A8GM54|ALR_RICAH RecName: Full=Alanine racemase
 gi|157799225|gb|ABV74479.1| alanine racemase [Rickettsia akari str. Hartford]
          Length = 355

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 189/367 (51%), Gaps = 25/367 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+++A+KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV + EEG
Sbjct: 6   LEINISAIKNNYLLLQGICKTSLVGAAVKANGYGLGAVQISKALIKENCRYFFVATSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PY 124
           V LR        I VL G+       + + NL PV++++ Q+  + K  +  + H   P 
Sbjct: 66  VNLRKALGLDVDILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSN--LKHRLLPC 123

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L  +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL  F+ 
Sbjct: 124 YLHFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNIFKA 183

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
            + ++  ++ASLA+S GI LG +YHF L RPG +LYG       +  M+  VT +A II 
Sbjct: 184 YLQYFPNVKASLANSGGIFLGQDYHFDLARPGAALYG------LNPVMKNPVTLKAPIIH 237

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++       + Y       RDS+IA   +GYADG+    S             G+ FI G
Sbjct: 238 LQNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSN-----------QGEVFING 286

Query: 305 YMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
             VPI+G+I+MD+   D+TD   L I +G   +I G     D +A   GT  Y++L  +G
Sbjct: 287 RSVPIVGRISMDLINIDVTDLPPLDIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLG 346

Query: 363 TRYAKFY 369
           +RY + Y
Sbjct: 347 SRYKRIY 353


>gi|296284109|ref|ZP_06862107.1| alanine racemase [Citromicrobium bathyomarinum JL354]
          Length = 365

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 194/366 (53%), Gaps = 33/366 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL ID  AL +NW +++ LSG AR  A VK + YGLG +   PAL  AG +DFFV    
Sbjct: 13  LRLAIDTAALAHNWRALDRLSGTARAGAAVKADCYGLGTQNCVPALVEAGARDFFVAHWS 72

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHP 123
           E   +  +    ++ VL+G+  G+E +    T + PVI+S+ Q   +  +   +C     
Sbjct: 73  EVAPVLDHVAPQQVAVLHGVMTGEEARYAIATGVRPVINSLHQAKVWLDAGGGTCN---- 128

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L VDTG NRLGL+  E  D      +     + +++SHL+ A++ S+  N  QL  FR
Sbjct: 129 --LMVDTGINRLGLAPTELSDPLLARLD-----VQVLMSHLSSAEEHSA-ANGHQLAAFR 180

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
              +     E S+A+S+GI LG +Y   LTRPG++LYGG    + +  ++ V   +A II
Sbjct: 181 AAQALLPHRETSIANSAGIALGRDYSCDLTRPGLALYGGVPTPDLAGHIRQVAFPQAAII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AG+ V Y  +   +    +   ++GYADG+  +              G KGF++
Sbjct: 241 HVRRIEAGDAVGYNREFTASGPMRVGTVSLGYADGFLRS-------------WGAKGFLR 287

Query: 304 --GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
             G  + +LGK++MDM + D+  +  ++VGD++ +      L D A  SG + Y+LL  +
Sbjct: 288 HQGRTLRLLGKVSMDMVVVDLAQAPDLDVGDWLDV---PYHLPDAAQHSGLSQYELLTTL 344

Query: 362 GTRYAK 367
           G R+ +
Sbjct: 345 GHRFER 350


>gi|86749577|ref|YP_486073.1| alanine racemase [Rhodopseudomonas palustris HaA2]
 gi|86572605|gb|ABD07162.1| alanine racemase [Rhodopseudomonas palustris HaA2]
          Length = 423

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 184/364 (50%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW  +   +  A  AAVVK +AYG G   +  AL  AG + FFV ++ E 
Sbjct: 46  LTIDLDAIVANWRKLEKTAVPAEAAAVVKGDAYGCGIAPVTKALVAAGCKTFFVATLAEA 105

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQ 127
             +R   P A I+VL G            N  PVI  + +L  +         S   A+ 
Sbjct: 106 AAVRATAPDAAIYVLDGFFQSTGDEFARLNCRPVIGDLYELAEWDVYCRRTQWSGGAAIH 165

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL++ EA            G ++L+ISHLA A+  +  +N+ Q+  FR + S
Sbjct: 166 IDTGMNRLGLTISEAQGIVPRIATGDHG-ITLVISHLAAAEALNHPMNARQVTAFREIAS 224

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSGI L P + F + RPG +LYG        +PMQ VV  +ARI+ +R 
Sbjct: 225 LFTGVPASLSASSGIFLDPQFAFDMVRPGAALYGINPTPEADNPMQPVVDLKARILQVRS 284

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YGG     R + IAV + GYADGY       D      V + G+        
Sbjct: 285 VERGDSVGYGGTWTARRPTKIAVLSAGYADGYFRAAGSNDGTRGADVIIAGQ------RC 338

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P+ G+I+MD+   D+TD  + +   G    + G  I +D++    G+  Y++L  +G RY
Sbjct: 339 PVAGRISMDLLAVDVTDLPANAARRGQMATLIGDGITVDELGHHFGSIGYEVLTSLGRRY 398

Query: 366 AKFY 369
           A+ Y
Sbjct: 399 ARVY 402


>gi|87199969|ref|YP_497226.1| alanine racemase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135650|gb|ABD26392.1| alanine racemase [Novosphingobium aromaticivorans DSM 12444]
          Length = 356

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 186/362 (51%), Gaps = 25/362 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL+ID  AL +NW +++A+SG A   A VK +AYGLG  +++  L  AG +DFFV    
Sbjct: 17  LRLRIDADALASNWRALDAMSGTATAGAAVKADAYGLGAARVSRILVGAGCRDFFVAHWA 76

Query: 67  EGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   L  + P A I VL+G ++  +      T   PV++S+ Q   + +    G  H   
Sbjct: 77  EVPNLLPHVPAASIAVLHGPMNAAEAAFARATGARPVLNSLSQARLWQE-TGGGRCH--- 132

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + VDTG +RLGL++ E  D      +     + L +SHLA AD+     N  Q  RF T+
Sbjct: 133 VMVDTGMSRLGLAMSEIADPALADLD-----VDLCLSHLASADEDVPQ-NEQQRLRFETV 186

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +       SLA+S+GI LG  +H  +TRPGI+LYGG  +   +  ++ V   EA +I +
Sbjct: 187 RAAIPARRYSLANSAGIALGAGFHADVTRPGIALYGGIARPEFAGTIRQVARPEAAVIQV 246

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ V Y       R   + V AIGYADGY    +G  S      FL       G 
Sbjct: 247 RHLQPGDKVGYNAIFTADRPMRVGVLAIGYADGYLRCWTGRGS------FL-----FDGV 295

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VP+LG+++MD+T+ D+    S   GD++        L   A  SG + Y+LL  +G R+
Sbjct: 296 EVPVLGRVSMDLTIVDLGGVPSCNEGDWLVA---SYDLPRAARESGLSQYELLTVLGRRF 352

Query: 366 AK 367
           ++
Sbjct: 353 SR 354


>gi|148552942|ref|YP_001260524.1| alanine racemase [Sphingomonas wittichii RW1]
 gi|148498132|gb|ABQ66386.1| alanine racemase [Sphingomonas wittichii RW1]
          Length = 348

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 189/369 (51%), Gaps = 26/369 (7%)

Query: 3   SNEFLRLKIDL--TALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           + EFL L++DL   AL  NW  +   +     AA+  D AYGLG  +++  L +AG +DF
Sbjct: 2   TQEFLPLRLDLDPQALVANWRWLGERAAAPAGAAIKAD-AYGLGAVEVSRRLADAGCRDF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           FV +  E   L      A + VL+G+          +   PV++S P +    K  + G 
Sbjct: 61  FVATWAETEALGSLPFGAGLSVLHGLREEDLAAALASRARPVLNS-PAMVARWKAAAPG- 118

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             P  + +DTG NRLGL+++EA     +       ++ L++SHLACAD+P S +N  Q  
Sbjct: 119 -RPCDVMIDTGMNRLGLTVEEACSGLLDGL-----EIDLLLSHLACADEPDSPMNERQRA 172

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           RF  L         SLA+S+G  LGP Y F L RPGI+LYGG  +      +  VV  EA
Sbjct: 173 RFVDLRGRVAAKRHSLANSAGACLGPAYGFDLIRPGIALYGGIPRPEARGHIVRVVRIEA 232

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ +R   AG+ + YG      R   +A+  +GYADGY    +G            G  
Sbjct: 233 QVLQVRDVPAGDTIGYGATFTAERPMRVAILNLGYADGYLRAFAG-----------NGAA 281

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G   P+ G+++MD+   D+T + + E GD+++I   D  L+  A  +G + Y+LL  
Sbjct: 282 LVNGRRCPLAGRVSMDLIAVDLTGADAAE-GDWLEI---DYALESAADRTGLSQYELLTG 337

Query: 361 IGTRYAKFY 369
           +G+RY + +
Sbjct: 338 LGSRYQRRW 346


>gi|296532301|ref|ZP_06895040.1| alanine racemase [Roseomonas cervicalis ATCC 49957]
 gi|296267377|gb|EFH13263.1| alanine racemase [Roseomonas cervicalis ATCC 49957]
          Length = 370

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 180/364 (49%), Gaps = 27/364 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  + A   +   A VVK + YGLG   +A AL  AG + FFV    EG
Sbjct: 28  LLVDLGAIVANWRDLAARHASGPVAGVVKADGYGLGAAPVARALAAAGCRHFFVAQFAEG 87

Query: 69  VKLRL---YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           + LR    + P   + VL G  PG +      +L PV+++   L         G      
Sbjct: 88  LALRQALGHGPM--VAVLGGFPPGADD---GADLTPVLNAPADLAEARAAGRRGA----I 138

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L  DTG  RLGL+   A +         LG L  +++HLACAD+P   +N+ Q  RF  +
Sbjct: 139 LHADTGMERLGLN---AAELAAAGDLSDLG-LRYVMTHLACADEPGHPLNAQQAARFAAV 194

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +   G+ AS A+SSG+ LG  +   L RPG +LYG      + +PM+ V+     I+ +
Sbjct: 195 RAGLPGLPASFANSSGLFLGEGFASDLARPGCALYGINPTPGQPNPMRPVLRLTVPILQL 254

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AG  V YG      RDS IA  A GYADGY   LS             G   + G 
Sbjct: 255 REVPAGTSVGYGASWVAKRDSRIATIAAGYADGYLRVLSNQ-----------GVATLHGQ 303

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VP++G+++MD+   D+TD+     GD +++ GP    D VA  +GT  Y++L  +G RY
Sbjct: 304 DVPLVGRVSMDLITLDVTDAPEARPGDRVELIGPRQTPDAVAALAGTIGYEILTSLGARY 363

Query: 366 AKFY 369
            + Y
Sbjct: 364 RRRY 367


>gi|34580918|ref|ZP_00142398.1| alanine racemase [Rickettsia sibirica 246]
 gi|28262303|gb|EAA25807.1| alanine racemase [Rickettsia sibirica 246]
          Length = 355

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 187/366 (51%), Gaps = 23/366 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL  A  + FFV S EEG
Sbjct: 6   VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEANCRHFFVASSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAEARIILI 245
            ++  ++ASLA+S GI LG +YHF L RPG +LYG        +P+ +  VT +A II +
Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYG-------LNPLTKNPVTLKAPIIHL 238

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +       + Y       RDS+IA   +GYADG+    S             G+ FI   
Sbjct: 239 QNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSN-----------QGEVFINSR 287

Query: 306 MVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VPI+G+++MD+   D+TD    E+  G   +I G     D +A   GT  Y++L  +G+
Sbjct: 288 SVPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGS 347

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 348 RYKRKY 353


>gi|302382920|ref|YP_003818743.1| alanine racemase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193548|gb|ADL01120.1| alanine racemase [Brevundimonas subvibrioides ATCC 15264]
          Length = 345

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 191/364 (52%), Gaps = 30/364 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL +N H++ A+SG A    VVK ++YGLG   +A  L   G + FFV  + EG
Sbjct: 7   LTVDLDALAHNVHALAAISG-APVHPVVKADSYGLGAIPVAQRLLREGSRTFFVARLAEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL--MSCGVSHPYA 125
           + LR    P+  ++VL G        +   +L P+++   QL  +      +CG      
Sbjct: 66  IALRSALGPEPTLYVLDGCVGDAAPALKAADLRPILNHGDQLMAWRAADGGACG------ 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           LQ+DTG NRLG  +++A              LSL++SHLACAD+P+  +N  Q + F   
Sbjct: 120 LQIDTGMNRLGFRIEDA--------PAPFEGLSLVMSHLACADEPAQPMNRRQRDAFAAA 171

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            + Y G   S A+S G  LGP+Y F   RPGI LYGG  +      ++ V T  AR++ +
Sbjct: 172 AARYPGALRSFANSGGCFLGPDYAFDAVRPGICLYGGGPEGRPHDRIKPVATLSARVLQV 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE + Y           IA    GYADG       L S+  P+    G+ ++ G 
Sbjct: 232 RDVPAGESIGYSRGFVAPEARRIATCGAGYADGV------LRSQ-CPN----GQVWVAGS 280

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           + PILG+++MD+   D+T  L + VGD +++FGP+  LDD A A+GT +Y+LL  +  R 
Sbjct: 281 LRPILGRVSMDVIAVDVT-GLDVAVGDPVELFGPNHLLDDAAAAAGTISYELLTSVTARV 339

Query: 366 AKFY 369
            + Y
Sbjct: 340 PRRY 343


>gi|229586333|ref|YP_002844834.1| alanine racemase [Rickettsia africae ESF-5]
 gi|259710072|sp|C3PMD1|ALR_RICAE RecName: Full=Alanine racemase
 gi|228021383|gb|ACP53091.1| Alanine racemase [Rickettsia africae ESF-5]
          Length = 355

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 188/372 (50%), Gaps = 35/372 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-------LMSCGV 120
           V LR        I VL G+       + + NL PV++++ Q+  + K       L+SC  
Sbjct: 66  VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLSC-- 123

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L  +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL 
Sbjct: 124 ----YLHFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLN 179

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAE 239
           RF+  + ++  ++ASLA+S GI LG +YHF L RPG +LYG        +P+ +  VT +
Sbjct: 180 RFKAYLQYFPNVKASLANSGGIFLGQDYHFDLARPGAALYG-------LNPLTKNPVTLK 232

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A II ++       + Y       RDS+IA   +GYADG+    S             G+
Sbjct: 233 APIIHLQNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSN-----------QGE 281

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDL 357
            FI    VPI+G+++MD+   D+TD    E+  G   +I G     D +A   GT  Y++
Sbjct: 282 VFINSRSVPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEV 341

Query: 358 LVRIGTRYAKFY 369
           L  +G+RY + Y
Sbjct: 342 LTNLGSRYKRKY 353


>gi|292571687|gb|ADE29602.1| Alanine racemase [Rickettsia prowazekii Rp22]
          Length = 404

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/408 (32%), Positives = 192/408 (47%), Gaps = 58/408 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L+A+KNN+  +  +   A   AVVK N YGLG  +IA AL     Q FFV + EEG
Sbjct: 6   LEINLSAIKNNYRLLQDICKTALVGAVVKANGYGLGAMQIAKALIKENCQYFFVATSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           + LR +      I VL G+       +   NL PV++++ Q+  + K  +  G   P  L
Sbjct: 66  INLRKVLNNDITILVLNGVFTHDALELIQYNLTPVLNNLSQIEIWQKFSNLKGKILPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NR GL+  E     ++    K   L  IISHLA +++  +  N +QL RF+  +
Sbjct: 126 HFNTGLNRFGLNSDEIEQLINDRDLLKGLDLQYIISHLAASEETGNPYNLIQLNRFKVYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------------------------- 221
            ++  ++AS A+S GI LG +YHF L RPG +LYG                         
Sbjct: 186 EYFPNVKASFANSGGIFLGQDYHFDLARPGAALYGLNSLIEVSSNLSYTEEFESNTAALT 245

Query: 222 GTDKINK----------------SHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
            T  INK                SH   +Q  VT +A II ++       + Y       
Sbjct: 246 TTACINKCPDVSVRLTPKLPLKGSHTVRLQNPVTLKAPIIDLQNLTLDSHIGYNMTFTTK 305

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
           RDS+IA   +GYADG+    S             G+ FI    VPI+G+++MD+   D+T
Sbjct: 306 RDSVIATLPLGYADGFSRNFSS-----------QGEVFINSCSVPIVGRVSMDLINIDVT 354

Query: 324 DSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D    EV  G   +I G     D +A   GT  Y++L  +G+RY + Y
Sbjct: 355 DLPPSEVFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSRYKRKY 402


>gi|15892051|ref|NP_359765.1| alanine racemase [Rickettsia conorii str. Malish 7]
 gi|20137218|sp|Q92JD9|ALR_RICCN RecName: Full=Alanine racemase
 gi|15619170|gb|AAL02666.1| alanine racemase [Rickettsia conorii str. Malish 7]
          Length = 355

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 186/366 (50%), Gaps = 23/366 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAEARIILI 245
            ++  ++ASLA+S GI LG +YHF L RPG +LYG        +P+ +  VT +A II +
Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYG-------LNPLTKNPVTLKAPIIHL 238

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +       + Y       RDS+IA   +GYADG+    S             G+ FI   
Sbjct: 239 QNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSN-----------QGEVFINSR 287

Query: 306 MVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VPI+G+++MD+   D+TD    E+  G   +I G     D +A   GT  Y++L  +G+
Sbjct: 288 SVPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGS 347

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 348 RYKRKY 353


>gi|238650557|ref|YP_002916409.1| alanine racemase [Rickettsia peacockii str. Rustic]
 gi|259710073|sp|C4K1B0|ALR_RICPU RecName: Full=Alanine racemase
 gi|238624655|gb|ACR47361.1| alanine racemase [Rickettsia peacockii str. Rustic]
          Length = 355

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 186/366 (50%), Gaps = 23/366 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   VEINLSTIKNNYLLLQDVCKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAEARIILI 245
            ++  ++ASLA+S GI LG +YHF L RPG +LYG        +P+ +  VT +A II +
Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYG-------LNPLTKNPVTLKAPIIHL 238

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +       + Y       RDS+IA   +GYADG+    S             G+ FI   
Sbjct: 239 QNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSN-----------QGEVFINSR 287

Query: 306 MVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VPI+G+++MD+   D+TD    E+  G   +I G     D +A   GT  Y++L  +G+
Sbjct: 288 SVPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGS 347

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 348 RYKRKY 353


>gi|85374046|ref|YP_458108.1| alanine racemase [Erythrobacter litoralis HTCC2594]
 gi|84787129|gb|ABC63311.1| alanine racemase [Erythrobacter litoralis HTCC2594]
          Length = 348

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 190/365 (52%), Gaps = 30/365 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL ID  AL+ NW +++ LSG AR  A VK + YGLG +   P L +AG +DFFV    
Sbjct: 10  LRLDIDREALEANWRALDRLSGKARAGAAVKADCYGLGVDTCVPVLRDAGARDFFVAHWS 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   +  +    +I VL+G +  +E +        PV++S+ Q   +  + S G   P  
Sbjct: 70  EVADVARHVLPEQIAVLHGANTAEEAEYARSIGARPVVNSLHQANVW--IDSGG--GPCH 125

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + VDTG +RLG++  E         +     + +++SHL+ AD+  + VN+ QLE FR L
Sbjct: 126 MMVDTGIHRLGIAPSEVAANVIRQLD-----VQVLMSHLSSADE-DTPVNAAQLEAFRAL 179

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                  E SLA+S+GI L  ++ F LTRPG+SLYGG  +   +  ++ V   +A II +
Sbjct: 180 KGQLGAQELSLANSAGIGLNDDFAFDLTRPGLSLYGGVQRPELAEHIRQVAYPKAAIIQV 239

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG---FI 302
            +  AG+ V Y G+        +   ++GYADG+                 GGKG   + 
Sbjct: 240 AELRAGDHVGYNGEFTAPDAMRVGTVSLGYADGFLRA-------------WGGKGLALYH 286

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           +G  +P+LGK++MDM + D+     + VG ++ +      L   + A+G + Y+LL  +G
Sbjct: 287 EGRSLPLLGKVSMDMVVVDLAAEPDLSVGTWLDV---PYDLPRASEATGLSQYELLTILG 343

Query: 363 TRYAK 367
            R+A+
Sbjct: 344 QRFAR 348


>gi|51473254|ref|YP_067011.1| alanine racemase [Rickettsia typhi str. Wilmington]
 gi|81826340|sp|Q68XW3|ALR_RICTY RecName: Full=Alanine racemase
 gi|51459566|gb|AAU03529.1| alanine racemase [Rickettsia typhi str. Wilmington]
          Length = 402

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 129/406 (31%), Positives = 190/406 (46%), Gaps = 56/406 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L+A+KNN+  +  +   A   A VK N YG+G  +IA AL     Q FFV + EEG
Sbjct: 6   LEINLSAIKNNYRLLQDICTTALVGAAVKANGYGIGAMQIAKALIEENCQYFFVATSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126
           + LR        I VL G+       +   NL PV++++ Q+  + K  +      P  L
Sbjct: 66  INLRKALNNDITILVLNGVFTHDALELIQYNLTPVLNNLKQIEIWQKFSNLKEKILPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NR GL+  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGLNRFGLNYDEIEQLINDRDLLKGLDLQYIISHLAASEEMDNPYNLAQLNRFKDYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------------------------- 221
            ++  ++ASLA+S GI LG +YHF L RPG +LYG                         
Sbjct: 186 EYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNSLIEVSYNLSYKEKFERNTPALA 245

Query: 222 GTDKINK----------------SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
            T  INK                S+ +Q  VT +A II ++       + Y       RD
Sbjct: 246 TTVCINKCADVNTRLTYKVPLKGSYRLQNPVTLKAPIIHLQNLTLDSHIGYNMTFTTKRD 305

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
           S+IA   +GYADG+    S             G+ FI    VPI+G+++MD+   D+TD 
Sbjct: 306 SIIATLPLGYADGFSRNFSN-----------QGEVFINSRSVPIVGRVSMDLINIDVTDL 354

Query: 326 LSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              EV  G  ++I G     D +A   GT  Y++L  +G+RY + Y
Sbjct: 355 PPSEVFLGQEVEIIGNYCTPDKIASIIGTVGYEVLTSLGSRYKRKY 400


>gi|15603973|ref|NP_220488.1| alanine racemase [Rickettsia prowazekii str. Madrid E]
 gi|6647413|sp|Q9ZE52|ALR_RICPR RecName: Full=Alanine racemase
 gi|3860664|emb|CAA14565.1| ALANINE RACEMASE (alr) [Rickettsia prowazekii]
          Length = 404

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 130/408 (31%), Positives = 190/408 (46%), Gaps = 58/408 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L+A+KNN+  +  +   A   AVVK N YGLG  +IA AL     Q FFV + EEG
Sbjct: 6   LEINLSAIKNNYRLLQDICKTALVGAVVKANGYGLGAMQIAKALIKENCQYFFVATSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           + LR +      I VL G+       +   NL PV++++ Q+  + K  +  G   P  L
Sbjct: 66  INLRKVLNNDITILVLNGVFTHDALELIQYNLTPVLNNLSQIEIWQKFSNLKGKILPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NR GL+  E     ++    K   L  IISHLA +++  +  N +QL RF+  +
Sbjct: 126 HFNTGLNRFGLNSDEIEQLINDRDLLKGLDLQYIISHLAASEETGNPYNLIQLNRFKVYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------------------------- 221
            ++  ++AS A+S GI LG +YHF L RPG +LYG                         
Sbjct: 186 EYFPNVKASFANSGGIFLGQDYHFDLARPGAALYGLNSLIEVSSNLSYTEEFESNTAALT 245

Query: 222 GTDKINKSHP------------------MQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
            T  INK                     +Q  VT +A II ++       + Y       
Sbjct: 246 TTACINKCPDVSVRLTPKLPLKGSYTVRLQNPVTLKAPIIDLQNLTLDSHIGYNMTFTTK 305

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
           RDS+IA   +GYADG+    S             G+ FI    VPI+G+++MD+   D+T
Sbjct: 306 RDSVIATLPLGYADGFSRNFSS-----------QGEVFINSCSVPIVGRVSMDLINIDVT 354

Query: 324 DSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D    EV  G   +I G     D +A   GT  Y++L  +G+RY + Y
Sbjct: 355 DLPPSEVFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSRYKRKY 402


>gi|85708650|ref|ZP_01039716.1| alanine racemase [Erythrobacter sp. NAP1]
 gi|85690184|gb|EAQ30187.1| alanine racemase [Erythrobacter sp. NAP1]
          Length = 355

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 190/363 (52%), Gaps = 28/363 (7%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           SNE   L++D  ALK+NW  ++ +SG+A   A VK + YGLG     P L  AG ++FFV
Sbjct: 15  SNE---LRVDTEALKDNWRMLDRMSGDAGAGAAVKADCYGLGVSICVPTLVEAGCRNFFV 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
            + +E  +L  Y    +I VL G + P +      + ++PVI+S+ Q   ++K    G  
Sbjct: 72  ANWDEAEELSHYVAPEQIAVLQGPVTPQEADFAKASGILPVINSIHQAKLWTK-AGGGTC 130

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           H   L +DTG NRLG++  +  D    + +     + + +SHLA AD+    +N+ QL  
Sbjct: 131 H---LMIDTGINRLGIAPSDISDPAIAALD-----IDVAMSHLASADE-DGPMNARQLAL 181

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           +R  +   +    SLA+S+GI LG +Y F LTRPG++LYGG  +      ++ V   +A 
Sbjct: 182 YRECLGSVRHKRESLANSAGIALGMDYAFDLTRPGLALYGGIARPELEGRIKQVAYIKAC 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  R   AG+ V Y G+   +    +   +IGYADG+      L +      F+     
Sbjct: 242 VLQTRSLKAGDAVGYNGEFVASEPMRVGTISIGYADGF------LRARGPGEAFM----- 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            +G  +P+LGK++MDM + D+  +  ++ GD++ +      L + A  S  + Y+LL  +
Sbjct: 291 FEGKRLPLLGKVSMDMVVVDLAHAPEVKEGDWLDV---PFDLLNAARQSSVSQYELLTVL 347

Query: 362 GTR 364
           G R
Sbjct: 348 GRR 350


>gi|157828002|ref|YP_001494244.1| alanine racemase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932698|ref|YP_001649487.1| alanine racemase [Rickettsia rickettsii str. Iowa]
 gi|166969428|sp|A8GQR1|ALR_RICRS RecName: Full=Alanine racemase
 gi|189027390|sp|B0BW55|ALR_RICRO RecName: Full=Alanine racemase
 gi|157800483|gb|ABV75736.1| alanine racemase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907785|gb|ABY72081.1| alanine racemase [Rickettsia rickettsii str. Iowa]
          Length = 355

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 186/366 (50%), Gaps = 23/366 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   VEINLSTIKNNYLLLQDVCKTSLVGAAVKANGYGLGAIQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRNALGLDINILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAEARIILI 245
            ++  ++ASLA+S GI LG +YHF L RPG +LYG        +P+ +  VT +A II +
Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYG-------LNPLTKNPVTLKAPIIHL 238

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +       + Y       RDS+IA   +GYADG+    S             G+ FI   
Sbjct: 239 QNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSN-----------QGEVFINSR 287

Query: 306 MVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VPI+G+++MD+   D+TD    E+  G   +I G     + +A   GT  Y++L  +G+
Sbjct: 288 SVPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPNKIASIIGTIGYEVLTNLGS 347

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 348 RYKRKY 353


>gi|153871849|ref|ZP_02000914.1| alanine racemase 2, PLP-binding, catabolic [Beggiatoa sp. PS]
 gi|152071686|gb|EDN69087.1| alanine racemase 2, PLP-binding, catabolic [Beggiatoa sp. PS]
          Length = 357

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 188/361 (52%), Gaps = 23/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N   +   + N+R  AV+K N YG G  ++A  +  A V  F V+ +EE ++
Sbjct: 9   IDTAALRGNVQRVKVCAPNSRIMAVIKANGYGHGAIRMAQTI-EASVNAFAVSCLEEALQ 67

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G  HP +  II D +L  V+ +  Q   +  L+   +  P    L+
Sbjct: 68  LREAEITIPIVLLEGFFHPNELPIIADQDLHIVVHTHKQ---FEDLLKAPLEKPITIWLK 124

Query: 128 VDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VDTG +RLG +  +    +     ++++ Q   ++SHL+CADD    +   Q + F  L 
Sbjct: 125 VDTGMHRLGFAPSDIEPIYKLLKHSQQIAQPIRLMSHLSCADDRQDEITEQQTQIFMALA 184

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
            H   +EASLA+S+G+L  PN H    RPGI LYG +       K   +Q+V+  ++ +I
Sbjct: 185 RHLN-LEASLANSAGVLGWPNTHADWVRPGIMLYGVSPFLKSAGKREGLQSVMQLQSTLI 243

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +++   GE + YG   +  +  L+ V AIGYADGYP         H+PS   G    + 
Sbjct: 244 SVKRHRKGEAIGYGATWRCPQTMLVGVVAIGYADGYP--------RHAPS---GTPVLVN 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP++G+++MDM   D+    +  +GD + ++G  + ++++A  +GT  Y+LL  +  
Sbjct: 293 GRRVPLVGRVSMDMITVDLRSQPNARIGDPVVLWGRHLPVEEIANDAGTIAYELLCHVNH 352

Query: 364 R 364
           R
Sbjct: 353 R 353


>gi|56697512|ref|YP_167880.1| alanine racemase [Ruegeria pomeroyi DSS-3]
 gi|56679249|gb|AAV95915.1| alanine racemase [Ruegeria pomeroyi DSS-3]
          Length = 377

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 198/371 (53%), Gaps = 44/371 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL +NW ++NA +  A TAAVVK + YGLG  ++A  L  AG + FFV + EEG
Sbjct: 10  LTIDLDALADNWQALNART-TAETAAVVKADGYGLGAARVAARLARAGARTFFVAAAEEG 68

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R    P   I V  G   G   I+    L P+I+SV Q+  + + +     H + +Q
Sbjct: 69  AAVRKAVGPDPMIGVFSGHMEGDAGILRANRLTPMINSVDQMLRHVEQLP---GHRFGVQ 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL  ++       +  +     +L++SHLACAD+P   +N  QL  F+ +  
Sbjct: 126 LDTGMNRLGLEPEDWAQLREIALRQNP---ALVMSHLACADEPGHDMNRKQLRLFKEMTD 182

Query: 188 HYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
              GI+A  SLA++ GILLGP+YHF L RPG+ LYGG +  +++   + VVT +  +I +
Sbjct: 183 ---GIKAPRSLAATGGILLGPDYHFDLCRPGVGLYGG-EPFDEA---KAVVTLDLPVIQV 235

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG---FI 302
           R    GE V YG      R   IA  A GYADG    +              G+G   F 
Sbjct: 236 RDLAEGETVGYGNSWTAPRACRIATVAAGYADGLHRAM--------------GRGITLFA 281

Query: 303 KGYMVPILGKITMDMTMFDIT----DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
                P++G+I+MD+   D++    +  S+++ + +Q       +DD+A A+GT  Y++L
Sbjct: 282 GKTACPVVGRISMDLITVDVSGLDHEPASLQLLNRLQT------VDDLAEAAGTIGYEIL 335

Query: 359 VRIGTRYAKFY 369
             +G RY + Y
Sbjct: 336 TSMGRRYRRSY 346


>gi|157964159|ref|YP_001498983.1| alanine racemase [Rickettsia massiliae MTU5]
 gi|157843935|gb|ABV84436.1| Alanine racemase [Rickettsia massiliae MTU5]
          Length = 377

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 187/366 (51%), Gaps = 23/366 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 28  VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 87

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 88  VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 147

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 148 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 207

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAEARIILI 245
            ++  ++ASLA+S GI LG +YHF L R G +LYG        +P+ +  VT +A II +
Sbjct: 208 QYFPNVKASLANSGGIFLGQDYHFDLARSGAALYG-------LNPLTKNPVTLKAPIIHL 260

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +       + Y       RDS+IA   +GYADG+    S     +   VF+  +G     
Sbjct: 261 QNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFS-----NQGEVFINSRG----- 310

Query: 306 MVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VPI+G+++MD+   D+TD    E+  G   +I G     D +A   GT  Y++L  +G+
Sbjct: 311 -VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGS 369

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 370 RYKRKY 375


>gi|192360177|ref|YP_001981190.1| alanine racemase [Cellvibrio japonicus Ueda107]
 gi|190686342|gb|ACE84020.1| alanine racemase [Cellvibrio japonicus Ueda107]
          Length = 379

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 185/372 (49%), Gaps = 25/372 (6%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  NWH + N ++ +   AAVVK NAYGLG   +  AL   G   FF  + EE
Sbjct: 20  LTIDLHAICANWHFLKNQVAPHVDVAAVVKANAYGLGAVPVVRALRKEGCTTFFFATKEE 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPY 124
            +   L        VL G+  G E    +  L PV+ S   V +   Y+K  +C    P 
Sbjct: 80  ALASGLNGEHCLKIVLSGVRSGDEPFFVEGQLTPVLYSLADVQRWNAYAK--NCCKRLPC 137

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG  R+G+S++E   F     +  +  L  ++SHLACAD PS   N  QL+ F+ 
Sbjct: 138 ILKVDTGMTRMGMSIEELEAFCEAHASIHIAPL-FLMSHLACADTPSHPANQRQLQLFKQ 196

Query: 185 LIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
            +      +  I+ASLA+S+GILLG ++HF L RPG +LYG        + ++ V+T   
Sbjct: 197 ALDIAQVRFPEIKASLANSAGILLGADWHFDLVRPGAALYGINPVSGIPNLLKPVITLSL 256

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ IR       V Y         S +AV A GYADG   TL        P     G  
Sbjct: 257 PVLQIRSLQHDAYVGYSATHFAKAGSRLAVVAGGYADGIHRTLG-----FKPLAQFNGMA 311

Query: 301 FIKGYMVPILGKITMDMTMFDIT---DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           F        +G+++MD  +FDI+   ++   +VGDY+++    + L+ +   + +  Y++
Sbjct: 312 F------EAVGRVSMDSCVFDISQCPENRLPQVGDYLEVVNESLSLNFLMERNASLGYEV 365

Query: 358 LVRIGTRYAKFY 369
           L  +GTR+ + Y
Sbjct: 366 LNSLGTRFHRIY 377


>gi|260770257|ref|ZP_05879190.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972]
 gi|260615595|gb|EEX40781.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972]
          Length = 387

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 194/371 (52%), Gaps = 34/371 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+  + ALSG+ +  AV+K +AYG G  ++A AL +A    F V+ +EE  +
Sbjct: 8   IDLNALQHNYRRLKALSGSQQVVAVIKGDAYGHGAVQLASALPDA--DRFAVSRLEEAEE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YALQ 127
           LRL      I +L G     + K   +  L   I    QL     L +  ++HP    L+
Sbjct: 66  LRLAGITQPILLLEGCFCADDLKRAAELKLDTTIHCEEQL---HDLETSTLAHPIHVWLK 122

Query: 128 VDTGFNRLGLSLQEALDF------THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           VDTG +RLG+   +  ++      TH   N+KLG     ISH +CADD +      QL  
Sbjct: 123 VDTGMHRLGVQPFQVPEYVSRIERTHK-LNEKLG----FISHFSCADDINHPTTQRQLAC 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
           F    + Y G + ++A+S+GIL  P   F + R GI+L+G     +   + H +  V+T 
Sbjct: 178 FNQATAQYDGPK-TIANSAGILFWPESQFDVARAGIALFGISPSAEHTGRDHALVPVMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             R+I +RK  A   V YG      +D+ I V A+GY DGYP +        +PS   G 
Sbjct: 237 NTRLIAVRKHQASRPVGYGETWHAQQDTHIGVIAMGYGDGYPRS--------APS---GT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             F+ G +VPI+G+++MDM   D+    + +VGD ++++G ++ ++ +A   GT  Y+L 
Sbjct: 286 PVFVNGRLVPIVGRVSMDMITVDLGPDATDQVGDVVEMWGKNLPIETIANHVGTIPYELT 345

Query: 359 VRIGTRYAKFY 369
           +++  R  + Y
Sbjct: 346 IKLTPRVHRHY 356


>gi|13475189|ref|NP_106753.1| alanine racemase [Mesorhizobium loti MAFF303099]
 gi|20137424|sp|Q98A05|ALR1_RHILO RecName: Full=Alanine racemase, biosynthetic
 gi|14025940|dbj|BAB52539.1| alanine racemase [Mesorhizobium loti MAFF303099]
          Length = 397

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 193/367 (52%), Gaps = 24/367 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL A++ N+  ++ L G+  + AAVVK +AYGLG   IA  L +AG    FV +++E
Sbjct: 13  LEIDLAAIRANFQKISTLVGDKVKVAAVVKSDAYGLGLVDIARTLIDAGCDLLFVANLDE 72

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR    +  I V                LIPV+++  +L     + + G    Y L 
Sbjct: 73  ALLLRSSFSRVAIAVFRDEFDRFGTWYRSHGLIPVVNNCKEL---HAVGTAGEPQSYFLN 129

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           V+TGF+R GLS+ +   ++   +F +   + S+++SHLAC +  S  +N +Q +RFRT+ 
Sbjct: 130 VETGFSRFGLSVGDIQREYLLRTFERY--RPSIVLSHLACGECISDPMNQLQRDRFRTVY 187

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
              K    SL++S+G+ LG +YHF + R G +LYG  +   +++P++ VV   ARI+ +R
Sbjct: 188 DLLKPTRGSLSASAGVWLGKSYHFDMVRVGSALYGIHNAGVQTNPLKPVVKLRARILDVR 247

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK--G 304
              AGE V YG   +  R S +A+  IGY  G P + +              K F++   
Sbjct: 248 SVPAGEAVGYGATFRTDRASRVAIVGIGYKHGLPWSCA-------------NKIFVRLAE 294

Query: 305 YMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           Y  P +G+I+M+  + DITD  +     G + ++   D  ++D+  A+G +  + L R+G
Sbjct: 295 YSAPSIGRISMEYMIIDITDVPARRCSPGTFAELLSEDFTVNDLGAAAGVSPQEALTRLG 354

Query: 363 TRYAKFY 369
               + Y
Sbjct: 355 AGCTRKY 361


>gi|315182757|gb|ADT89670.1| alanine racemase [Vibrio furnissii NCTC 11218]
          Length = 387

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 191/366 (52%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+  + ALSG+ +  AV+K +AYG G  ++A AL +A    F V+ +EE  +
Sbjct: 8   IDLNALQHNYRRLKALSGSQQVVAVIKGDAYGHGAVQLASALPDA--DRFAVSRLEEAEE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YALQ 127
           LRL      I +L G     + K   +  L   I    QL     L +  ++HP    L+
Sbjct: 66  LRLAGITQPILLLEGCFCADDLKRAAELKLDTTIHCEEQL---HDLETSTLAHPIHVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VDTG +RLG+   +  ++       +KL +    ISH +CADD +      QL  F    
Sbjct: 123 VDTGMHRLGVQPFQVPEYVSRIERTRKLSEKLGFISHFSCADDINHPTTQRQLACFNQAT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARII 243
           + Y G + ++A+S+GIL  P   F + R GI+L+G     +   + H +  V+T   R+I
Sbjct: 183 AQYDGPK-TIANSAGILFWPESQFDVARAGIALFGISPSAEHTGRDHALVPVMTLNTRLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK  A   V YG      +D+ I V A+GY DGYP +        +PS   G   F+ 
Sbjct: 242 AVRKHQASRPVGYGETWHAQQDTHIGVIAMGYGDGYPRS--------APS---GTPVFVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G +VPI+G+++MDM   D+    + +VGD ++++G ++ ++ +A   GT  Y+L +++  
Sbjct: 291 GRLVPIVGRVSMDMITVDLGPDATDQVGDVVEMWGKNLPIETIANHVGTIPYELTIKLTP 350

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 351 RVHRHY 356


>gi|146305685|ref|YP_001186150.1| alanine racemase [Pseudomonas mendocina ymp]
 gi|145573886|gb|ABP83418.1| alanine racemase [Pseudomonas mendocina ymp]
          Length = 358

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 185/367 (50%), Gaps = 26/367 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+ +N+      +   +  AVVK NAYG G  ++  AL+      F V S+EE  +
Sbjct: 8   VDLSAIAHNYAVAKRCAPGRQAFAVVKANAYGHGVREVVTALHEVA-DGFAVASLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YALQ 127
           +R    +ARI +L G     E  I     L  V+ S  Q      L++C  + P    L+
Sbjct: 67  VRAMHGEARILLLEGCFEASEYAIAAQLGLDLVVQSAAQ---ADALLACEPARPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +D+G +RLG     +L   H      +++ +L+L+ SH ACAD+    +  +Q+ERF  L
Sbjct: 124 LDSGMHRLGFD-AASLRQWHARLEMAEQVAELNLL-SHFACADERGHPLTELQVERFLDL 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARI 242
           +        SLA+S+ +L  P  H    RPGI LYG T   D   +   ++  +T  AR+
Sbjct: 182 LD-LDFNHRSLANSAAVLTIPAAHMDWLRPGIMLYGATPFADFSARELGLKPAMTLAARV 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+   GE V YG      R S IA  + GYADGYP         H+PS   G    +
Sbjct: 241 IAVRQVAVGESVGYGATWVAERPSRIATVSCGYADGYP--------RHAPS---GTPVLV 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G   P+ G+++MDM   DITD   + +   ++++G  + +D+VA ASGT  Y+LL ++ 
Sbjct: 290 DGQRAPLAGRVSMDMLTVDITDLPEVGIDSSVELWGAQLPVDEVAHASGTIGYELLTKVT 349

Query: 363 TRYAKFY 369
            R  + Y
Sbjct: 350 ARVPRRY 356


>gi|71279952|ref|YP_269587.1| alanine racemase [Colwellia psychrerythraea 34H]
 gi|71145692|gb|AAZ26165.1| alanine racemase [Colwellia psychrerythraea 34H]
          Length = 360

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 191/365 (52%), Gaps = 22/365 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL  N+  ++ L+ N+ T AV+K +AYG    K+A AL ++ V+ F V  ++E + 
Sbjct: 12  INLDALVKNYQYLDNLASNSNTIAVLKADAYGHDASKVAHAL-SSEVKVFAVAFIDEALA 70

Query: 71  LRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           LR    +  + +L G  P  E   +I  + N   ++ S  QL +  K ++   S    L+
Sbjct: 71  LRDAGIKNTVLILEG--PFNESDFEIALENNFALMLHSNYQLEWL-KSITPEFSGELWLK 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NRLG  +++  +       +++  L ++ SH A AD       + QL + + L++
Sbjct: 128 VDTGMNRLGFQVEQIDNVMSQLSAQQINNL-VLCSHFATADQIDCARPAKQLAKLKALVA 186

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILI 245
            + G + S+A+S+GIL  P  H    R G++LYG +      KS P+   +T +A II I
Sbjct: 187 KH-GCKYSMANSAGILNWPESHGHYNRLGLALYGASPIGDSPKSQPLIPAMTLQANIIAI 245

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
                GE V YG   +  R++ +A  AIGYADGYP                G   FI G 
Sbjct: 246 HTVNVGESVGYGNNWQAERETKLATVAIGYADGYPRNAKS-----------GTPVFINGA 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++G+++MDM   DITD     +GD ++++G ++ +D VA  S T NY+LL R+  R 
Sbjct: 295 QAPLVGRVSMDMITVDITDLKHTAIGDTVELWGKNLSIDIVAQNSDTINYELLTRVSKRV 354

Query: 366 AKFYT 370
            + +T
Sbjct: 355 PRVFT 359


>gi|77919828|ref|YP_357643.1| alanine racemase [Pelobacter carbinolicus DSM 2380]
 gi|77545911|gb|ABA89473.1| alanine racemase [Pelobacter carbinolicus DSM 2380]
          Length = 378

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 189/382 (49%), Gaps = 40/382 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R++IDL ALK+N++    L+G  +   AVVK +AYG G   +A AL   GV+ F V  VE
Sbjct: 11  RVEIDLEALKHNFYQAQRLAGPGQGVLAVVKADAYGHGAAHVAMALQGVGVEMFGVAIVE 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC----GVSH 122
           EGV LR       I VL G++PGQE+ +    L+P +     +    +L SC    GV  
Sbjct: 71  EGVALREAGVVCPILVLGGLYPGQEENLLRYGLVPTLFD---MDVARRLDSCARAAGVVL 127

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-----LIISHLACADDPSSHVNSV 177
           PY ++VDTG +R+G    +          ++LG LS      + SHLA AD+P + VN  
Sbjct: 128 PYHMKVDTGMSRVGFRPDDL-----PRVLEELGALSGLRMDGLFSHLAMADEPENTVNQK 182

Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSH 230
           QLE FR  +   +          L++S+ +L        L+RPGI LYG   +       
Sbjct: 183 QLEIFRGCLDRVRQAGFAPRYVHLSNSAALLTREVPECNLSRPGILLYGALPSPAFAGRF 242

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++   RI  IRK   G  VSYG +    R +++AV  +GYADGY   LS +    
Sbjct: 243 DLKPVMSFRTRIAQIRKVPEGTGVSYGHRFVAERPTVLAVIPVGYADGYSRQLSNV---- 298

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                  G+  ++G    + G + MD TM D+TD   + VGD + + G D    I  D+ 
Sbjct: 299 -------GEMLVRGQRARVAGTVCMDWTMIDVTDIPDVAVGDEVTLLGCDNGQCITADEW 351

Query: 347 ALASGTTNYDLLVRIGTRYAKF 368
           A   GT +Y++  +   R  + 
Sbjct: 352 AERIGTISYEVFCQFSKRVPRL 373


>gi|323974227|gb|EGB69357.1| alanine racemase domain-containing protein [Escherichia coli
           TW10509]
          Length = 355

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 179/359 (49%), Gaps = 15/359 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + ++L A+ +N+ ++      A+  AV+K NAYGLG E IAPALY A  + FFV  + EG
Sbjct: 1   MCVNLAAIVDNYRTLARHVAPAQCGAVLKANAYGLGAEAIAPALYAANCRIFFVAQLSEG 60

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126
           V LR   P  A + VL G+ P      +   + P+++S+ Q+  +  L+          +
Sbjct: 61  VALRKILPTDAMVVVLNGVMPEAMAYCYAQQITPLLNSIDQVMAWLTLLETRQQRRAVMI 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG+  Q+ +        +       IISHLA AD P   +N  Q   F+   
Sbjct: 121 QLDSGMSRLGVMPQQLMRLAAIFRERNWPAPDYIISHLANADRPDHALNVAQHALFQQAK 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + +     SLA+S G+ L P +   L RPGI+L+ G  +   S P++   T    I+ ++
Sbjct: 181 TVFPSSRFSLANSCGMFLQPGWREDLCRPGIALF-GVAQPWFSRPLKPAFTLTLTILRVQ 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YG     TR   IA  + GYADG P  +        P+    G  + +G  
Sbjct: 240 DVPAGTPVGYGSTITATRPLRIATISAGYADGVPRNM------RPPA----GVCW-RGVR 288

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +P+LG++ MD  M D   +++   GD ++  G    L+ VA A  T  Y+++ R+G R+
Sbjct: 289 LPVLGRVCMDSFMVD-ASAVTPTAGDKVEFIGAGQTLEQVAAACNTIPYEIMTRLGARF 346


>gi|221133975|ref|ZP_03560280.1| alanine racemase [Glaciecola sp. HTCC2999]
          Length = 367

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 196/372 (52%), Gaps = 29/372 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEGV 69
           ID+ AL +N+H     +  ++T AV+K + YG G  KIA  L  A V D F V  ++E +
Sbjct: 9   IDINALLHNYHQAKNAAPQSQTMAVIKADGYGHGMLKIAQCL--ADVADGFAVAFIDEAI 66

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTF---YSKLMSCGVSHPYA 125
             R       I VL G H  ++ ++  D +L  V+    Q+ +   +   +S   + P  
Sbjct: 67  ACRDAGLTQPILVLEGAHSPEDIVLAVDYDLWLVMHQPEQIDWLVEFDATLSVDETKPTV 126

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
             + DTG +RLGLS  E L+        +    ++++ H ACADD S+ +N+ QL +   
Sbjct: 127 WFKCDTGLHRLGLSPNE-LETALRRVPSEYLDNAVLMGHFACADDLSNPMNAHQLTQLND 185

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT------VVTA 238
           L + Y+ +  S+A+S  I+   + H Q  R GI+LYG  + +N+S  +Q+      V+T 
Sbjct: 186 LANRYQ-LPISMANSPAIVADTDSHGQWNRLGIALYGA-EPLNRSSAVQSNVVLKPVMTL 243

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A II +R+   G+ V YG   +  R S+IA  AIGY DGYP         H+PS   G 
Sbjct: 244 TAAIIGLRQIQPGDAVGYGQTWQAQRPSMIATVAIGYGDGYP--------RHAPS---GT 292

Query: 299 KGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
             F++G  VP++G+++MDM   D+TD S    +GD ++++G ++ +  VA    T NY+L
Sbjct: 293 PVFLQGQTVPLVGRVSMDMITVDVTDLSQVPNIGDMVELWGANLSVTTVAAHINTINYEL 352

Query: 358 LVRIGTRYAKFY 369
           + RI  R  K Y
Sbjct: 353 VTRISPRVTKTY 364


>gi|304312030|ref|YP_003811628.1| Alanine racemase, catabolic [gamma proteobacterium HdN1]
 gi|301797763|emb|CBL45985.1| Alanine racemase, catabolic [gamma proteobacterium HdN1]
          Length = 362

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 201/373 (53%), Gaps = 29/373 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +D++AL++N+  +  L+   R  A++K +AYG G   IA AL +A    F V  + E
Sbjct: 6   RAVVDISALRHNYQRLRTLAQGRRVMALMKADAYGHGALGIASALPDADA--FGVAYLGE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
            V+LR    +A I +L G     E        + V+  + Q      L +  +S P    
Sbjct: 64  AVQLREAGVRAPIVLLEGAMAIDELAYAAALDLAVV--IHQHEQLQWLKNSSLSRPLTIW 121

Query: 126 LQVDTGFNRLGLSLQEA------LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           L+VDTG +RLG++  EA      L+    + + K+ ++ +++SHLACAD P   + + QL
Sbjct: 122 LKVDTGMHRLGIAPSEAASVLAELECLQRAPDPKVREV-VVMSHLACADLPDHPMTAQQL 180

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
           + F+  ++   G + S+A+S+G+LLG ++ F   RPGI LYGG+ + ++S     ++ V+
Sbjct: 181 KAFQE-VTRGVGGQRSIANSAGLLLGDDFGFDWVRPGIMLYGGSPRNDRSAEQLGLRAVM 239

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              A II IR   AGE V YG      RD+ + + A+GY DGYP         H   V  
Sbjct: 240 KLVAPIIAIRTVAAGESVGYGASWVAERDTRVGIVAVGYGDGYP--------RH---VRA 288

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G    +LG+++MDM   D++ +++ ++GD ++++GP + ++ VA  +GT NY+
Sbjct: 289 GACVLLHGCECLLLGRVSMDMLAIDLS-AVNAQLGDEVELWGPSLPVERVANWAGTINYE 347

Query: 357 LLVRIGTRYAKFY 369
           L  +I  R  + Y
Sbjct: 348 LFCQITGRVRREY 360


>gi|261322850|ref|ZP_05962047.1| alanine racemase [Brucella neotomae 5K33]
 gi|261298830|gb|EEY02327.1| alanine racemase [Brucella neotomae 5K33]
          Length = 314

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/281 (38%), Positives = 152/281 (54%), Gaps = 15/281 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---NK--SHPMQ 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   NK   H + 
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
            V+T  AR+I +R    G  V YGG         IA  A+G
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVG 301


>gi|218551070|ref|YP_002384861.1| Alanine racemase 3 [Escherichia fergusonii ATCC 35469]
 gi|218358611|emb|CAQ91259.1| Alanine racemase 3 [Escherichia fergusonii ATCC 35469]
          Length = 388

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 180/362 (49%), Gaps = 15/362 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  A+ +N+  +   +  A+  AV+K NAYGLG E IAPALY A  + FFV  + EG
Sbjct: 34  MCINRAAIVDNYRMLARHAAPAQCGAVLKANAYGLGAETIAPALYAANCRIFFVAQLSEG 93

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126
           V LR   P  A + VL G+ P      F   + P+++S+ Q+  +  L+          +
Sbjct: 94  VALRKILPTDAMVVVLNGVMPEAMVFCFAQQITPLLNSIDQVMAWLTLLETRQQRRAVMI 153

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG+  Q+ +        +       IISHLA AD P   +N VQ  R +   
Sbjct: 154 QLDSGMSRLGVMSQQLMRLAAIFRERNWPAPDYIISHLANADRPDHALNMVQHARLQQAK 213

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + +     SLA+S G+ L   +   L RPGI+L+G T     S  ++ V T    I+ ++
Sbjct: 214 AVFPSSRFSLANSCGMFLHLGWREDLCRPGIALFGVTQPWF-SRLLKPVFTLTLTILRVQ 272

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YG     TR   IA  + GYADG P  +        P+    G  + +G  
Sbjct: 273 DVPAGTPVGYGSTVTATRPLRIATISAGYADGVPRNM------RPPA----GVCW-RGVR 321

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D   ++S   GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 322 LPVLGRVCMDSFMVD-ASAVSPTAGDVVEFIGTGQTLEEVAAACDTIPYEIMTRLGARFQ 380

Query: 367 KF 368
           + 
Sbjct: 381 RI 382


>gi|13488309|ref|NP_085891.1| alanine racemase [Mesorhizobium loti MAFF303099]
 gi|20137422|sp|Q981H7|ALR3_RHILO RecName: Full=Alanine racemase 3
 gi|14028426|dbj|BAB54978.1| alanine racemase [Mesorhizobium loti MAFF303099]
          Length = 388

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 189/374 (50%), Gaps = 38/374 (10%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL+A++ N+ +++AL G   R AAVVK +AYGLG  K+A AL +AG    FV ++ E
Sbjct: 12  LEIDLSAIQANFQTISALVGPQVRVAAVVKSDAYGLGLVKVAGALIDAGCDLLFVGNLHE 71

Query: 68  GVKLRLYTPQARI------FVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGV 120
            + LR     A +      F  YG H       + +N LIPV+++  +L        CG 
Sbjct: 72  ALLLRSSHISAAVAVFCDEFARYGEH-------YRSNGLIPVVNNSVELDAI-----CGA 119

Query: 121 SHP--YALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
             P  Y L V+TG +RLGL+  +    +    F ++    S+++SHLAC++     +N +
Sbjct: 120 REPQAYFLNVETGLSRLGLAFDDVRRRYLGGIFKRR--PPSVVLSHLACSERAGDAMNLL 177

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           Q  RFR      K    SLA+S+G+ LG  YHF + R G +LYG      + +P++ VV 
Sbjct: 178 QWNRFRATSDLLKPTLLSLAASAGVWLGKRYHFDMVRVGSALYGLNSAGIRPNPLKPVVG 237

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +A+ +  R     E V YG   +  R S +A+A IGY  G P   +   S         
Sbjct: 238 VKAKTLDARNVARSEAVGYGATFRTGRASRLAIAGIGYKHGLPWACANKISVR------- 290

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNY 355
                 GY  P++G+++M+    D+TD        G  +++   D  +DD+A ++G    
Sbjct: 291 ----FAGYSAPLVGRVSMEYITIDVTDVPEALCGPGTNVELLSDDFTVDDLAASAGVHPQ 346

Query: 356 DLLVRIGTRYAKFY 369
           ++L R+G   A+ Y
Sbjct: 347 EVLTRLGVGCARQY 360


>gi|304319746|ref|YP_003853389.1| alanine racemase region protein [Parvularcula bermudensis HTCC2503]
 gi|303298649|gb|ADM08248.1| alanine racemase region protein [Parvularcula bermudensis HTCC2503]
          Length = 382

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 185/375 (49%), Gaps = 32/375 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVE 66
           L +DL AL  N+  +   +G  +  A VVK NAYGLG   IA  LY   G + FF  +  
Sbjct: 10  LTVDLGALGRNYDELKRRTGGTSAVAPVVKANAYGLGMHAIARTLYREKGARLFFTATCR 69

Query: 67  EGVKL-----RLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           E + L     R +     R++VL G   G   +      +P++S    +  +      G 
Sbjct: 70  EALALLVDGQRFFDDAPPRVYVLNGFD-GDRALQEKVGYLPILSDWQDVGDWV----AGG 124

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             P  + VD G NRLG+S Q+A     ++  N     + LI+ HL+ + DP++  N +Q 
Sbjct: 125 GGPCGISVDIGMNRLGMSFQDAGGLPQDTRLNPD--DVQLIMMHLSHSGDPTAPENELQA 182

Query: 180 ERFRT----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
           E+F T    L   Y   + SL++S GILLG     Q+ R G +LYGG         +  V
Sbjct: 183 EKFFTSGMMLARLYPKAQFSLSNSGGILLGLAPEQQIVRAGYALYGGAPNGLPGQGLDQV 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            T EA ++ +R   +GE V Y G  +  R + +AV   GYADG    LS     +  +V+
Sbjct: 243 TTFEASVLQVRDIGSGESVGYNGTWRAERPTRLAVLGAGYADGIQRALS-----NRGAVW 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTN 354
           LGG       + PI G ++MD+   DITD+ S +  GD  +I+G  I LD VA  +GT  
Sbjct: 298 LGGG------LCPIRGAVSMDLVTVDITDAPSPVTRGDKAEIWGAQIDLDLVARQAGTIG 351

Query: 355 YDLLVRIGTRYAKFY 369
           YDLL  +G+R  + Y
Sbjct: 352 YDLLTGVGSRVERIY 366


>gi|222080194|ref|YP_002540057.1| alanine racemase [Agrobacterium vitis S4]
 gi|221738839|gb|ACM39618.1| alanine racemase [Agrobacterium vitis S4]
          Length = 294

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/271 (37%), Positives = 142/271 (52%), Gaps = 3/271 (1%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  +  ++    TAAVVK +AYGLG E++A  LY  G + FFV    E 
Sbjct: 24  LTIDLGALSRNYELLAGMAAPGNTAAVVKADAYGLGAERVARTLYAKGCRHFFVAQFIEA 83

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
            +LR   +  ARIFVL G+ PG E +    N++PVI+S+ Q    ++     G   P  +
Sbjct: 84  TRLRPALSYDARIFVLNGLQPGNEDVCAYENIVPVINSMDQWRNRNRTARRLGRRLPIVV 143

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGL  +E               +  ++SHLA ADD  S  N  QLE  R + 
Sbjct: 144 QFDTGMSRLGLPPEERPLLAEAVAQGSDVDILFLMSHLASADDEKSAQNGEQLEELRKIA 203

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + + G + S A+S GI LG +Y   L RPGI+LYGG     + +PM+ VV  +  ++  R
Sbjct: 204 AEFPGYDLSFANSGGIFLGDDYRGLLARPGIALYGGAPSAAR-NPMEAVVRLDVAVVQTR 262

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
                  V YGG    TR++ +A  A G  D
Sbjct: 263 TVPGSTKVGYGGAHVTTRETRLATIAAGECD 293


>gi|284107226|ref|ZP_06386367.1| Alanine racemase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829973|gb|EFC34252.1| Alanine racemase [Candidatus Poribacteria sp. WGA-A3]
          Length = 386

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 182/371 (49%), Gaps = 23/371 (6%)

Query: 11  IDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL AL +N   +   L+      AV+K N YG G + +A AL   GV+ F V SV EGV
Sbjct: 14  IDLNALAHNLRELRRVLAPRVDILAVIKANGYGHGYKALAEALSQLGVRRFGVASVHEGV 73

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQV 128
            LR       + V+ G+ PGQ K +   NLIP +S    +   S+ +S     +P  ++V
Sbjct: 74  LLREAGRLEDVIVMGGMLPGQVKDLVHANLIPTLSDADTMHALSREVSQHDRPYPIHVKV 133

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  RLG + +E L    +     L     +++HLA AD+P      +QL+RF   +S 
Sbjct: 134 DTGMRRLGFTTREVLPLLQSPAFSHLLSCQGLMTHLADADNPDPAFTLLQLDRFHETVSS 193

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEARI 242
                       A+++ IL  P  H  + RPG+ LYG T   ++  P  +Q V++   ++
Sbjct: 194 LPANGPRPWRHAANTAAILWHPRAHLDMVRPGLLLYGYTPAQDRDVPVSLQPVLSLTTKV 253

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + ++ A  GE VSYG   +  RDS +A+  IGYA GY   LS             G+  I
Sbjct: 254 VHLKTAGKGEPVSYGDLYRTRRDSRLAILPIGYAHGYNRRLSNT-----------GEVII 302

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358
                PI+G+I MDMT+ D+TD  +I+ GD + + G      I   D+A    +  Y++L
Sbjct: 303 HDRRFPIVGRICMDMTVVDVTDDPTIKQGDDVILMGRSATQAITAYDLANWQDSIPYEVL 362

Query: 359 VRIGTRYAKFY 369
             +G    + Y
Sbjct: 363 CNLGPNVPREY 373


>gi|149918225|ref|ZP_01906717.1| alanine racemase [Plesiocystis pacifica SIR-1]
 gi|149820985|gb|EDM80392.1| alanine racemase [Plesiocystis pacifica SIR-1]
          Length = 402

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 25/341 (7%)

Query: 11  IDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +D  AL +N  ++ A  G   R  AVVK + YG G  + A A  +AG     V+ VEEGV
Sbjct: 38  VDEGALAHNLRTVQAHVGERCRVLAVVKADGYGHGAVESARAFVDAGAWGLAVSLVEEGV 97

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP--QLTFYSKLMSCGVSHPYALQ 127
           +LR +  +A + VL G+HPG E +I    L PV+ S    QL   +   S   + P  ++
Sbjct: 98  ELRQHGVRAPVLVLSGVHPGSEDVIVHGALTPVVWSPQHFQLLTSAVRRSGAATLPVHIK 157

Query: 128 VDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFR 183
           +DTG +RLG+    L   LD+       +L ++  +++H ACADD    + S  QLERF+
Sbjct: 158 IDTGMSRLGVLPEDLGALLDWYQAHAASEL-RIEGVMTHFACADDAEDALTSARQLERFQ 216

Query: 184 TLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPMQTVVT 237
             +     + I  S+    +S+G++     H  + RPGI+LYG G+ +  +   ++  + 
Sbjct: 217 ACLRVLGERRIHPSIRHVCNSAGLVRFSEAHLDMVRPGIALYGAGSSRAVELPELRMAMG 276

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +R++ IR+  AG  VSYG ++ L R S + +  +GY DGYP T+SG            
Sbjct: 277 VHSRLLGIRELPAGTAVSYGHRQVLDRPSRLGIVPVGYGDGYPRTMSGR----------- 325

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            +  I+G+  P++G ITMD++M D+T+      G+ + + G
Sbjct: 326 AQMLIRGHRCPVVGNITMDLSMVDVTELPDAREGERVTLMG 366


>gi|114777489|ref|ZP_01452486.1| biosynthetic alanine racemase [Mariprofundus ferrooxydans PV-1]
 gi|114552271|gb|EAU54773.1| biosynthetic alanine racemase [Mariprofundus ferrooxydans PV-1]
          Length = 358

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 177/365 (48%), Gaps = 26/365 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L  L +N+  +   + +A   AVVK NAYG G   +APAL+ AG + F VT  +EG K
Sbjct: 9   INLDHLCHNYRLLQQAATDASVMAVVKANAYGHGLNLVAPALFRAGCRLFAVTDADEGAK 68

Query: 71  LRLY------TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           LR             I +L GI   G   +    +L P IS   Q      L +      
Sbjct: 69  LRNILRSDDPAGDTEIALLSGIFDAGDASLATTEHLTPTISDSAQCDM---LQAADFDGA 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VDTG NRLG +  + L          + Q+   +SHLACAD P   +N  Q ERF 
Sbjct: 126 AWIKVDTGMNRLGAAEPQVL--IRQCLQAGI-QIRGFMSHLACADTPLHPMNRQQAERFA 182

Query: 184 TLISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           +L       +  SL +S+GI+  P+    + RPGI+LYG      K   ++ V+   AR+
Sbjct: 183 SLCDQAAPQLPRSLLNSAGIISMPDQCLDVVRPGIALYGAEPVAEKPMGLKPVMRMTARV 242

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE VSY           IA+ + GYADG P  LSG            G+   
Sbjct: 243 IQVRDIKAGETVSYSASFTAETSMRIAIVSAGYADGIPRALSGC-----------GQASC 291

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
              ++P+ G++ MD TM +++D+ +I+ GD ++ +G ++  +DVA    T +Y L   +G
Sbjct: 292 HDRLLPVTGRVCMDYTMLNVSDT-NIQSGDNVEFWGMELAANDVASMIDTISYTLFTGVG 350

Query: 363 TRYAK 367
            R  +
Sbjct: 351 ERVRR 355


>gi|146283965|ref|YP_001174118.1| alanine racemase, catabolic [Pseudomonas stutzeri A1501]
 gi|166969424|sp|A4VQM5|ALR_PSEU5 RecName: Full=Alanine racemase
 gi|145572170|gb|ABP81276.1| alanine racemase, catabolic [Pseudomonas stutzeri A1501]
          Length = 358

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 183/367 (49%), Gaps = 26/367 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DLTAL++N+      +   +  AVVK NAYG G  +   AL       F V  +EE   
Sbjct: 8   VDLTALRHNYLLAKQCAPQRKAFAVVKANAYGHGAPEAVTALREIA-DGFAVACLEEAEV 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YALQ 127
           +R   P+ARI +L G   P +     +  L   +    Q  +   L++  ++ P    L+
Sbjct: 67  IRGCAPEARILLLEGCFEPSEYLRAAELGLDIAVQDARQADW---LLAADLARPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +D+G +RLG S+ + L   H       ++G+L+LI SH ACAD+    +   QLER+  L
Sbjct: 124 LDSGMHRLGFSV-DGLRECHARLKGAAQVGELNLI-SHFACADERGHALTETQLERYAEL 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARI 242
           +        SLA+S+ +L  P  H    RPGI LYG T   +   +   ++ V+T    +
Sbjct: 182 L-ELPFEHCSLANSAAVLTLPQAHMAWIRPGIMLYGATPFAELSARELGLKPVMTLTGAL 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R    GE V YG      R S I   + GYADGYP T        +PS   G    I
Sbjct: 241 IAVRDVPVGESVGYGASWVAQRPSRIGTVSCGYADGYPRT--------APS---GTSVVI 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VP+ G+++MDM   D+TD    ++GD ++++G  + +D++A A GT  Y+LL ++ 
Sbjct: 290 HGQRVPLAGRVSMDMLAVDLTDLPQAQLGDAVELWGAQMPIDELAQACGTIGYELLTKVT 349

Query: 363 TRYAKFY 369
            R  + Y
Sbjct: 350 GRVPRRY 356


>gi|238918209|ref|YP_002931723.1| alanine racemase [Edwardsiella ictaluri 93-146]
 gi|259710066|sp|C5BCC5|ALR_EDWI9 RecName: Full=Alanine racemase
 gi|238867777|gb|ACR67488.1| alanine racemase, putative [Edwardsiella ictaluri 93-146]
          Length = 363

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 187/368 (50%), Gaps = 26/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N+  +   + ++R  AVVK NAYG G  + A  L  A    + V  + E + 
Sbjct: 8   IDRRALRHNFQQIRKFAPHSRLIAVVKANAYGHGLLETAKILNQADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  ++   N+   + S  QL     L + G+  P    ++
Sbjct: 66  LRSGGIVKPILLLEGFFSASDLPVLVANNIETAVHSEEQL---QALENAGLERPIRVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F         + Q    +SH +CAD+P S    VQL  F   +
Sbjct: 123 LDTGMHRLGVRPEQAEAFYRRLCACPNVAQPVNFMSHFSCADEPDSGRTEVQLACFDDFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAEAR 241
               G E S+A+S GILL P  H  + RPGI +YG + + + S     + +Q  +T ++ 
Sbjct: 183 RGKTG-EQSIAASGGILLWPQSHRDMVRPGIIMYGVSPQADLSLAADHYGLQPAMTLQSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G    
Sbjct: 242 LIAVREHKAGEPVGYGGAWVAQRDTRLGVVAIGYGDGYPRS--------APS---GTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+    +  VGD + ++GP + ++ VA  +G + Y+L+ ++
Sbjct: 291 INGREVPIVGRVSMDMISVDLGPQAADRVGDNVIMWGPGLPVEKVAACTGISAYELITKL 350

Query: 362 GTRYAKFY 369
            +R A  Y
Sbjct: 351 TSRVAMEY 358


>gi|183597310|ref|ZP_02958803.1| hypothetical protein PROSTU_00561 [Providencia stuartii ATCC 25827]
 gi|188023331|gb|EDU61371.1| hypothetical protein PROSTU_00561 [Providencia stuartii ATCC 25827]
          Length = 360

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 196/366 (53%), Gaps = 23/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+ ++R  A+VK NAYG G  +++  L +  V  F V  ++E + 
Sbjct: 8   INRRALRHNLQRVRELAPHSRLIAIVKANAYGHGLTEVSTTLEDL-VDGFGVARLKEALA 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR     A I +L G     +  ++ +  +  VI  V QL     L +  +++P    ++
Sbjct: 67  LRERGITAPIVLLEGFFEHSDLPLLVEHQIDTVIHCVEQLAM---LEATELANPIKVWMK 123

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  Q+A  F       K +     IISH   AD+P     + Q+  F+  +
Sbjct: 124 LDTGMHRLGVLPQDAEAFYQRLQACKNVKHPINIISHFCQADEPELPTTANQIHCFKQFV 183

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
           ++  G E S+A+S+GILL P+ H+   RPGI +YG + +   S     +Q+V+T ++ +I
Sbjct: 184 ANKAG-EKSIAASAGILLWPDAHYDWVRPGIIMYGASPQEGTSAEHFGLQSVMTLKSTLI 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AG+ V YG      RD+ + V AIGY DGYP +        +PS   G    + 
Sbjct: 243 AVREHAAGQCVGYGATWCSQRDTRLGVVAIGYGDGYPRS--------APS---GTPVLVN 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G+++MDM   D+  + + +VGD + ++G  + ++++A  +G  NY+LL ++ +
Sbjct: 292 GRKVPIVGRVSMDMITVDLGPNANDKVGDEVILWGKSLPVEEIAAQTGIINYELLTKLTS 351

Query: 364 RYAKFY 369
           R    Y
Sbjct: 352 RVVMEY 357


>gi|254230408|ref|ZP_04923789.1| alanine racemase [Vibrio sp. Ex25]
 gi|151937067|gb|EDN55944.1| alanine racemase [Vibrio sp. Ex25]
          Length = 366

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 189/367 (51%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   + A +  ++  AVVK N YG G   +A    +A    F V  +EE ++
Sbjct: 16  IDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHANHADA--FGVARIEEALQ 73

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 74  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLI---ALEQADLETPVVVWLK 130

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++  +F T       + +    +SH  CAD+  SH+   Q+E F++L 
Sbjct: 131 IDSGMHRLGVRPEQYDEFVTRLKECPNVAKPLRYMSHFGCADELDSHITPQQIELFKSLT 190

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           S  +G E SLA+S+G+L  P  H    RPGI +YG +   DK  +    Q V+T ++ +I
Sbjct: 191 SGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDLGYQPVMTLKSHLI 249

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YGG     RD+ + V A+GY DGYP +        +P+   G   ++ 
Sbjct: 250 AVREVKKGESVGYGGMWTSKRDTKVGVIAVGYGDGYPRS--------APN---GTPVWVN 298

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y+L+ ++  
Sbjct: 299 GRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHIGTIAYELVTKLTP 358

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 359 RVEMEYS 365


>gi|260773727|ref|ZP_05882642.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14]
 gi|260610688|gb|EEX35892.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14]
          Length = 366

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 191/368 (51%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL AL++N+  + +LSG  +  AV+K +AYG G  ++A AL  A   D+F V  VEE  
Sbjct: 8   IDLIALRHNYLRLKSLSGQQKLIAVIKGDAYGHGAVQLAKALPMA---DWFAVARVEEAE 64

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
           +L        + +L G     + +   D  L  VI    QL     L    +++P +  L
Sbjct: 65  ELIANGIDQPVLLLEGCFCADDLQRAADLKLATVIHCEEQL---RDLEQSNLANPISIWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           ++DTG +RLG+  ++  ++        K  GQL  + SH +CADD S      Q+E F  
Sbjct: 122 KIDTGMHRLGVQPEQVTEYVQRIERSGKLKGQLGFM-SHFSCADDLSHPATLKQIECFSQ 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241
               Y G + SLA+S+GIL  P   F + R GI+LYG +  +  S   H +  V+T   R
Sbjct: 181 AAFPYSGPK-SLANSAGILFWPESQFNVARAGIALYGISPSLYHSGIDHQLLPVMTVTTR 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  A + V YG      RD+ I V A+GY DGYP +        +P+   G   F
Sbjct: 240 LIAVRQHTANQPVGYGETWYAKRDTKIGVIAMGYGDGYPRS--------APA---GTPVF 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+      +VGD ++++G ++ ++ VA   GT  Y+L +++
Sbjct: 289 INGRQVPIVGRVSMDMITVDLGPDAMDKVGDSVEMWGKNLPVETVAKHIGTIPYELTIKL 348

Query: 362 GTRYAKFY 369
             R A+ Y
Sbjct: 349 TNRVARHY 356


>gi|262393111|ref|YP_003284965.1| alanine racemase biosynthetic [Vibrio sp. Ex25]
 gi|262336705|gb|ACY50500.1| alanine racemase biosynthetic [Vibrio sp. Ex25]
          Length = 361

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 189/367 (51%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   + A +  ++  AVVK N YG G   +A    +A    F V  +EE ++
Sbjct: 11  IDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHANHADA--FGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 69  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLI---ALEQADLETPVVVWLK 125

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++  +F T       + +    +SH  CAD+  SH+   Q+E F++L 
Sbjct: 126 IDSGMHRLGVRPEQYDEFVTRLKECPNVAKPLRYMSHFGCADELDSHITPQQIELFKSLT 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           S  +G E SLA+S+G+L  P  H    RPGI +YG +   DK  +    Q V+T ++ +I
Sbjct: 186 SGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDLGYQPVMTLKSHLI 244

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YGG     RD+ + V A+GY DGYP +        +P+   G   ++ 
Sbjct: 245 AVREVKKGESVGYGGMWTSKRDTKVGVIAVGYGDGYPRS--------APN---GTPVWVN 293

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y+L+ ++  
Sbjct: 294 GRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHIGTIAYELVTKLTP 353

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 354 RVEMEYS 360


>gi|327482293|gb|AEA85603.1| alanine racemase, catabolic [Pseudomonas stutzeri DSM 4166]
          Length = 358

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 183/367 (49%), Gaps = 26/367 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DLTAL++N+      +   +  AVVK NAYG G  +   AL       F V  +EE   
Sbjct: 8   VDLTALRHNYLLAKQCAPQRKAFAVVKANAYGHGAPEAVTALREIA-DGFAVACLEEAEV 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YALQ 127
           +R   P+ARI +L G   P +     +  L   +    Q  +   L++  ++ P    L+
Sbjct: 67  IRGCAPEARILLLEGCFEPSEYLRAAELGLDIAVQDARQADW---LLAADLARPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +D+G +RLG S+ + L   H       ++G+L+LI SH ACAD+    +   QLER+  L
Sbjct: 124 LDSGMHRLGFSV-DGLRECHARLKGAPQVGELNLI-SHFACADERGHALTETQLERYAEL 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARI 242
           +        SLA+S+ ++  P  H    RPGI LYG T   +   +   ++ V+T    +
Sbjct: 182 L-ELPFEHCSLANSAAVVTLPQAHMAWIRPGIMLYGATPFAELSARELGLKPVMTLTGAL 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R    GE V YG      R S I   + GYADGYP T        +PS   G    I
Sbjct: 241 IAVRDVPVGESVGYGASWVAQRPSRIGTVSCGYADGYPRT--------APS---GTSVVI 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VP+ G+++MDM   D+TD    ++GD ++++G  + +D++A A GT  Y+LL ++ 
Sbjct: 290 HGQRVPLAGRVSMDMLAVDLTDLPQAQLGDAVELWGAQMPIDELAQACGTIGYELLTKVT 349

Query: 363 TRYAKFY 369
            R  + Y
Sbjct: 350 GRVPRRY 356


>gi|261346560|ref|ZP_05974204.1| alanine racemase [Providencia rustigianii DSM 4541]
 gi|282565263|gb|EFB70798.1| alanine racemase [Providencia rustigianii DSM 4541]
          Length = 360

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 189/365 (51%), Gaps = 19/365 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+ N+R  AVVK NAYG G   +   +    V  F V  + E + 
Sbjct: 8   INRRALRHNLQRVRELAPNSRLIAVVKANAYGHGLVGVGTEVQEL-VDGFGVARLNEALL 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G     + +++ + N+  VI  V QL              + +++D
Sbjct: 67  LRHQGINKPIVLLEGFFEQSDLQLMVEYNIDTVIHCVEQLEMLESAQLAKQIKVW-MKLD 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  Q A  F     + +   L + I+SH   AD P     + Q+E F+  +S 
Sbjct: 126 TGMHRLGVLPQHAESFYQRLQSCQNVDLPINIVSHFCQADAPELPTTAKQIECFQQFVSD 185

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILI 245
             G E S+A+S+GILL P  H+   RPGI +YG + +  KS     +  V+T ++ +I +
Sbjct: 186 KPG-EKSIAASAGILLWPEAHYDWVRPGIMMYGASPQEGKSAASFGLLPVMTLKSSLIAV 244

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AG+ V YG   +  R++L+ V AIGY DGYP  +        PS   G    + G 
Sbjct: 245 REHSAGQCVGYGETWRSERNTLLGVVAIGYGDGYPRNV--------PS---GTPVLVNGR 293

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI+G+I+MDMT+ D+    + +VGD + ++G  + ++++A  +G  NY+LL ++ +R 
Sbjct: 294 KVPIIGRISMDMTVVDLGPDSTDKVGDDVILWGNALPVEEIAAQTGIINYELLTKLTSRV 353

Query: 366 AKFYT 370
           A  Y 
Sbjct: 354 AMEYV 358


>gi|269964436|ref|ZP_06178677.1| alanine racemase [Vibrio alginolyticus 40B]
 gi|269830774|gb|EEZ84992.1| alanine racemase [Vibrio alginolyticus 40B]
          Length = 366

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 194/382 (50%), Gaps = 29/382 (7%)

Query: 1   MHSNEFLRLK-----IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           M SN    +K     IDL+AL++N   + A +  ++  AVVK N YG G   +A    +A
Sbjct: 1   MMSNPMSYMKAAKACIDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHANHA 60

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
               F V  +EE ++LR       I +L G + PG   ++   N+  V+    QL     
Sbjct: 61  DA--FGVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLI---A 115

Query: 115 LMSCGVSHPYA--LQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPS 171
           L    +  P    L++D+G +RLG+  ++  +F T       + +    +SH  CAD+  
Sbjct: 116 LEQADLETPVVVWLKIDSGMHRLGVRPEQYDEFVTRLKECPNVAKPLRYMSHFGCADELD 175

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINK 228
           S +   Q+ERF++L S  +G E SLA+S+G+L  P  H    RPGI +YG +   DK  +
Sbjct: 176 SDITPQQIERFKSLTSGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQ 234

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               Q V+T ++ +I +R+   GE V YGG     RD+ + V A+GY DGYP +      
Sbjct: 235 DLGYQPVMTLKSHLIAVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRS------ 288

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
             +P+   G   ++ G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA 
Sbjct: 289 --APN---GTPVWVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAG 343

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
             GT  Y+L+ ++  R    Y+
Sbjct: 344 HIGTIAYELVTKLTPRVEMEYS 365


>gi|56415949|ref|YP_153024.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197364876|ref|YP_002144513.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130206|gb|AAV79712.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096353|emb|CAR61958.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 368

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 176/362 (48%), Gaps = 15/362 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGEEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V LR + +  A + +L G+ P    +     + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRKILSADAMVVLLNGVMPQAMPLCCAQQITPLLNSVDQVMAWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 193

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+ G  +   S P++   T    I+ ++
Sbjct: 194 KAFPTSRYSLANSCGMFLHPAWREDLCRPGVALF-GVAQPWFSTPLKPAFTLTLTILRVQ 252

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L            L G  + +G  
Sbjct: 253 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNLRP----------LAGVCW-RGVR 301

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 302 LPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIIARLGARFR 360

Query: 367 KF 368
           + 
Sbjct: 361 RI 362


>gi|207859294|ref|YP_002245945.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206711097|emb|CAR35471.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 368

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 177/362 (48%), Gaps = 15/362 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V LR + +  A + +L G+ P    +     + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRKILSADAMVVLLNGVMPQAMPLCCAQQITPLLNSVDQVMAWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 193

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+ G  +   S P++   T    I+ ++
Sbjct: 194 EAFPTSRYSLANSCGMFLHPAWREDLCRPGVALF-GVAQPWFSTPLKPAFTLTLSILRVQ 252

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L        P+    G  + +G  
Sbjct: 253 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL------RPPA----GVCW-RGVR 301

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 302 LPVLGRVCMDSFMVDASAIMPTP-GDVVEFIGVSQTLEEVAAACDTIPYEIMTRLGGRFR 360

Query: 367 KF 368
           + 
Sbjct: 361 RI 362


>gi|16762331|ref|NP_457948.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143819|ref|NP_807161.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213052147|ref|ZP_03345025.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213427047|ref|ZP_03359797.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289830029|ref|ZP_06547478.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|20137366|sp|Q8Z300|ALR3_SALTI RecName: Full=Alanine racemase 3
 gi|25291653|pir||AD0937 alanine racemase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504635|emb|CAD09518.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139455|gb|AAO71021.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 368

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 176/362 (48%), Gaps = 15/362 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V LR + +  A + +L G+ P          + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 193

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+ G  +   S P++   T    I+ ++
Sbjct: 194 KAFPTSRYSLANSCGMFLHPAWREDLCRPGVALF-GVAQPWFSTPLKPAFTLTLTILRVQ 252

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L        P+    G  + +G  
Sbjct: 253 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL------RPPA----GVCW-RGVR 301

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 302 LPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFR 360

Query: 367 KF 368
           + 
Sbjct: 361 RI 362


>gi|213583064|ref|ZP_03364890.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 362

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 176/362 (48%), Gaps = 15/362 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLAHHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V LR + +  A + +L G+ P          + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 193

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+ G  +   S P++   T    I+ ++
Sbjct: 194 KAFPTSRYSLANSCGMFLHPAWREDLCRPGVALF-GVAQPWFSTPLKPAFTLTLTILRVQ 252

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L        P+    G  + +G  
Sbjct: 253 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL------RPPA----GVCW-RGVR 301

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 302 LPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFR 360

Query: 367 KF 368
           + 
Sbjct: 361 RI 362


>gi|238754673|ref|ZP_04616026.1| Alanine racemase 1 [Yersinia ruckeri ATCC 29473]
 gi|238707132|gb|EEP99496.1| Alanine racemase 1 [Yersinia ruckeri ATCC 29473]
          Length = 359

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 188/366 (51%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  L+  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRLAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHP--YALQ 127
           LR       I +L G    ++  +   N I   + S+ QL     L    + +P    ++
Sbjct: 66  LRSGGIVKPILLLEGFFSAEDLPVLVVNHIETAVHSIEQL---EALEQADLPYPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+   EA  F    S    + Q   I+SH + AD+P       Q+E F T +
Sbjct: 123 LDTGMHRLGVRPDEAEAFYQRLSACHNVVQPINIMSHFSQADEPEVSATRQQIECFDTFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           +   G + S+A+S GILL P+ H    RPGI LYG +    K      +Q  +T ++ +I
Sbjct: 183 ADKPG-KQSIAASGGILLWPDSHRDWVRPGIVLYGVSPIEQKNGADFGLQPGMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK  AGE V YGG     RD+ + V A+GY DGYP +        +PS   G   ++ 
Sbjct: 242 AVRKHKAGEPVGYGGTWVSQRDTRLGVVAMGYGDGYPRS--------APS---GTPVWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G+++MDM   D+    S  VGD ++++G D+ ++ VA+A+G + Y+L+ ++  
Sbjct: 291 GREVPIVGRVSMDMISVDLGPDSSDRVGDEVELWGADLPVEKVAIATGISAYELITKLTP 350

Query: 364 RYAKFY 369
           R +  Y
Sbjct: 351 RVSMEY 356


>gi|91227270|ref|ZP_01261695.1| alanine racemase [Vibrio alginolyticus 12G01]
 gi|91188664|gb|EAS74953.1| alanine racemase [Vibrio alginolyticus 12G01]
          Length = 358

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 188/367 (51%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   + A +  ++  AVVK N YG G   +A    +A    F V  +EE ++
Sbjct: 8   IDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHANHADA--FGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 66  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLI---ALEQADLETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++  DF T       + +    +SH  CAD+  S +   Q+E F++L 
Sbjct: 123 IDSGMHRLGVRPEQYDDFVTRLKECPNVAKPLRYMSHFGCADELDSDITPQQIELFKSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           S  +G E SLA+S+G+L  P  H    RPGI +YG +   DK  +    Q V+T ++ +I
Sbjct: 183 SGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDLGYQPVMTLKSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YGG     RD+ + V A+GY DGYP +        +P+   G   ++ 
Sbjct: 242 AVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRS--------APN---GTPVWVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y+L+ ++  
Sbjct: 291 GRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHIGTIAYELVTKLTP 350

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 351 RVEMEYS 357


>gi|300724710|ref|YP_003714035.1| alanine racemase [Xenorhabdus nematophila ATCC 19061]
 gi|297631252|emb|CBJ91947.1| alanine racemase 1, PLP-binding, biosynthetic [Xenorhabdus
           nematophila ATCC 19061]
          Length = 359

 Score =  166 bits (419), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 188/366 (51%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   + A + +++  AVVK NAYG G  + A  + +A    F V  + E + 
Sbjct: 8   INRRALRHNLQQVRAQAPDSKVIAVVKANAYGHGLLETACTMEDADC--FGVARIGEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  +   N I  V+ S+ QL     L    +SHP    ++
Sbjct: 66  LRSGGLVKPILLLEGFFEAADLPVLVVNHIDTVVHSIEQL---EALEQADLSHPIKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+ + EA  F    S    + Q   +ISH + AD+P+      Q+ERF   +
Sbjct: 123 LDTGMHRLGVRIDEAEAFYQRLSCCHNVEQPINLISHFSRADEPAVETTQQQIERFMAFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
           +   G E S+A+S G+LL    H    RPGI +YG +  ++K+     +   +T ++ +I
Sbjct: 183 ADKSG-EKSIAASGGVLLWLQAHLDWVRPGIMMYGVSPMVDKTAADFNLIPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK   GE V YGG     RD+ + V A+GY DGYP +        +P+   G   FI 
Sbjct: 242 AVRKHKVGESVGYGGTWSSERDTCLGVVAMGYGDGYPRS--------APT---GMPVFIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              VPI+G+++MDM   D+  +   +VGD + ++G  + ++ +A  SG + Y+L+ ++ +
Sbjct: 291 DREVPIVGRVSMDMITVDLGPACQDKVGDEVILWGSALPVEKIAEHSGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|323493025|ref|ZP_08098160.1| alanine racemase [Vibrio brasiliensis LMG 20546]
 gi|323312723|gb|EGA65852.1| alanine racemase [Vibrio brasiliensis LMG 20546]
          Length = 358

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 184/367 (50%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   +   + +++  AVVK NAYG G   +A +    G   F V  +EE ++
Sbjct: 8   IDLEALQHNLQQIKLQAPSSKIMAVVKANAYGHGLRHVAKS--AKGADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 66  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLV---ALEQAELETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++  DF T       + +    +SH  CAD+    + + Q E F TL 
Sbjct: 123 IDSGMHRLGVRPEQYSDFVTRLKACDNVAKPLRYMSHFGCADELDRPITNEQTELFMTLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
              +G E SLA+S+G+L  P+      RPGI +YG +   DK  +    Q V+T ++ +I
Sbjct: 183 EGCEG-ERSLAASAGLLAWPDSQLDWVRPGIIMYGVSPFNDKTAQDLGYQPVMTLKSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YGG     RD+ + V AIGY DGYP T        +P+   G    + 
Sbjct: 242 AVRDVKAGESVGYGGVWTSERDTKVGVIAIGYGDGYPRT--------APN---GTPVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+      +VGD   ++G D+  ++VA   GT  Y+L+ ++ +
Sbjct: 291 GRKVPISGRVSMDMLTVDLGPDAKDQVGDEAILWGRDLPAEEVAGHIGTIAYELVTKLTS 350

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 351 RVDMEYS 357


>gi|268591426|ref|ZP_06125647.1| alanine racemase [Providencia rettgeri DSM 1131]
 gi|291313080|gb|EFE53533.1| alanine racemase [Providencia rettgeri DSM 1131]
          Length = 360

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 188/369 (50%), Gaps = 27/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  ++ N++  AVVK NAYG G   +  A+    V  F V  + E + 
Sbjct: 8   INRRALRHNLQRVKEIAPNSQMIAVVKANAYGHGLVGVGQAVEEL-VDGFGVARLNEALL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           LR +     I +L G     + ++   + I  VI  + QL             PY L+V 
Sbjct: 67  LRQHGVIKPIVLLEGFFEQSDLLLMAEHQIDTVIHCIEQLEMLE-----ATKLPYPLKVW 121

Query: 129 ---DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRT 184
              DTG +RLG+  ++A  F       +  QL + I+SH   AD P       Q+  F+ 
Sbjct: 122 MKLDTGMHRLGILPKDAEGFYQRLQRCQQVQLPINIVSHFCQADAPHLPTTEKQIACFKQ 181

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEAR 241
            I   +G E S+A+S+GILL P  H+   RPGI +YG + +  KS     +  V+T ++ 
Sbjct: 182 FIDGKEG-EKSIAASAGILLWPEAHYDWVRPGIMMYGASPQEGKSAEDFGLLPVMTLKST 240

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AG+ V YG      +D+L+ V AIGY DGYP         + PS   G    
Sbjct: 241 LIAVREHAAGQCVGYGETWCSDKDTLLGVVAIGYGDGYP--------RNVPS---GTPVL 289

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+I+MDMT+ D+  +   +VGD + ++G  + ++++A  +G  NY+LL ++
Sbjct: 290 INGRKVPIVGRISMDMTVVDLGLNADDKVGDDVILWGNQLPVEEIATQTGIINYELLTKL 349

Query: 362 GTRYAKFYT 370
            +R A  Y 
Sbjct: 350 TSRVAMEYV 358


>gi|218677912|ref|ZP_03525809.1| putative alanine racemase [Rhizobium etli CIAT 894]
          Length = 165

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/157 (51%), Positives = 110/157 (70%)

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
           D+PS  +N  QLE FR + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG     
Sbjct: 1   DEPSHAMNRRQLESFRRVSAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCG 60

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            ++PM+ V TA+ARII +R   AGE VSYG   +L RDS +A+ ++GYADGY  + S   
Sbjct: 61  MANPMRPVATAQARIIQVRNVEAGETVSYGRALQLRRDSRLAIVSVGYADGYMRSQSSGG 120

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324
                 V  GG+GFI G+ VP+ G+ITMD+T+FD+TD
Sbjct: 121 VPLRQVVPQGGEGFIAGHKVPVAGRITMDLTIFDVTD 157


>gi|262172532|ref|ZP_06040210.1| alanine racemase biosynthetic [Vibrio mimicus MB-451]
 gi|261893608|gb|EEY39594.1| alanine racemase biosynthetic [Vibrio mimicus MB-451]
          Length = 364

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 184/369 (49%), Gaps = 28/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + +++  AVVK N YG G   IA   Y  G   F V  +EE ++
Sbjct: 11  INLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIA--RYAIGADAFGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 69  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+      + Q E F +
Sbjct: 126 VDSGMHRLGVRPEQYRDFVNRLHQCAN--VAKPLRYMSHFGCADELDKSTTAEQTELFLS 183

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V+T ++ 
Sbjct: 184 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPVMTLKSH 242

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 243 VIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 291

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+    +  VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 292 VNGRRVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGYELVTKL 351

Query: 362 GTRYAKFYT 370
            +R    Y+
Sbjct: 352 TSRVEMSYS 360


>gi|262401537|ref|ZP_06078104.1| alanine racemase biosynthetic [Vibrio sp. RC586]
 gi|262352252|gb|EEZ01381.1| alanine racemase biosynthetic [Vibrio sp. RC586]
          Length = 361

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 184/369 (49%), Gaps = 28/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + +++  AVVK N YG G   IA   Y  G   F V  +EE ++
Sbjct: 8   INLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIA--RYAIGADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 66  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+      + Q E F +
Sbjct: 123 VDSGMHRLGVRPEQYRDFVNRLHQCAN--VAKPLRYMSHFGCADELDKSTTAEQTELFLS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V+T ++ 
Sbjct: 181 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPVMTLKSH 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 240 LIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+    +  VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 289 VNGRRVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGYELVTKL 348

Query: 362 GTRYAKFYT 370
            +R    Y+
Sbjct: 349 TSRVEMSYS 357


>gi|261210391|ref|ZP_05924685.1| alanine racemase biosynthetic [Vibrio sp. RC341]
 gi|260840449|gb|EEX67015.1| alanine racemase biosynthetic [Vibrio sp. RC341]
          Length = 364

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 183/369 (49%), Gaps = 28/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + +++  AVVK N YG G   IA   Y  G   F V  +EE ++
Sbjct: 11  INLDALQHNLQRVKQQAPDSKIMAVVKANGYGHGLRHIA--RYAMGADAFGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 69  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQTQLETPVMVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +D+G +RLG+  ++  DF    H   N  + +    +SH  CAD+      + Q E F +
Sbjct: 126 IDSGMHRLGVRPEQYQDFVTRLHQCDN--VAKPLRYMSHFGCADELDKSTTAAQTELFLS 183

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V+T ++ 
Sbjct: 184 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAAQLGYQPVMTLKSH 242

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R   AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 243 LIAVRDVKAGESVGYGGTWISQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 291

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+    S  VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 292 VNGRRVPIAGRVSMDMLTVDLGPEASDCVGDEAMLWGGELPVEEVAAHIGTLGYELVTKL 351

Query: 362 GTRYAKFYT 370
            +R    Y+
Sbjct: 352 TSRVEMSYS 360


>gi|300870894|ref|YP_003785765.1| alanine racemase [Brachyspira pilosicoli 95/1000]
 gi|300688593|gb|ADK31264.1| alanine racemase [Brachyspira pilosicoli 95/1000]
          Length = 368

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 195/374 (52%), Gaps = 29/374 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL+NN   + +++GN +   +VK NAYG G   ++  L N  V    V +VEEGV
Sbjct: 8   EIDLKALQNNIKIIRSMTGNTKLLTIVKANAYGHGIVDMSKQLENLNVDALGVATVEEGV 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL--- 126
           K+R    +  I VL+     + + +   +L P+IS+   L  Y + +    +H   L   
Sbjct: 68  KIREAGVKIPIIVLFQHFKNEAEDVCRYDLTPIISNAECLDDYDRFLK---NHNKKLKLH 124

Query: 127 -QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLERF 182
            +VDTG NR+G   ++ L   +   +    ++  I +H A +   DD S      Q++ F
Sbjct: 125 IKVDTGLNRMGAKPKDVLSLANKILSYGTLEIEGINTHYAASDGFDDISKEFTENQIKIF 184

Query: 183 RTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
             +++  K  GI+   A  A+S+ +L   N +F + R GI +YG T+K+      + ++ 
Sbjct: 185 TDVLNELKTNGIKINNAHTANSAALLYYKNAYFDMVRAGIVVYGYTEKL-YDFGFKPILN 243

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++IL RK    E VSYG   K  +D+ IAV  IGYADG    LS     ++  V + 
Sbjct: 244 LKSKVILTRKIKKNETVSYGMTWKADKDTNIAVIPIGYADGLSRKLS-----NNWEVKIN 298

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG--TTNY 355
           GK +      PI+GKI MD+ M DI +  +I+  D + IFG D +L+   +A    + ++
Sbjct: 299 GKYY------PIIGKICMDIIMADIGNEDNIKEEDEVLIFGDDERLNANTMAKKIESISH 352

Query: 356 DLLVRIGTRYAKFY 369
           ++LVRIG R  + Y
Sbjct: 353 EVLVRIGERVKRVY 366


>gi|166367623|ref|YP_001659896.1| alanine racemase [Microcystis aeruginosa NIES-843]
 gi|166089996|dbj|BAG04704.1| alanine racemase [Microcystis aeruginosa NIES-843]
          Length = 397

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 182/364 (50%), Gaps = 25/364 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID +AL+ N   + AL +      AV+K +AYG G  K+A ++  AG Q   + ++ E
Sbjct: 30  VEIDRSALQQNVRKVKALLAPKTELIAVIKADAYGHGAVKVANSVLEAGAQSLAIATIGE 89

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR     A I +L  ++ P +   +    L P +  + Q+  ++ +M       P  
Sbjct: 90  GIELREAGIVAPIMILGAVNTPEEVAALAHWQLQPTLVQIEQVQIFASVMRRLEQRLPVH 149

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +RLG   Q    F          +++ I SH A ADDP+  +  +Q +RF+  
Sbjct: 150 IKLDTGMSRLGTQWQNGTKFVEQVLEAPNLKIASIYSHFATADDPNPEIMQLQRQRFQQA 209

Query: 186 ISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           I+    KG       LA+S+  L   + H+   R G++LYG    D +    P+Q V+  
Sbjct: 210 IAELRSKGYHPPCLHLANSAATLSDRSLHYDRVRVGLALYGLYPADHLTDKVPLQPVLQV 269

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +ARI  ++   AG  VSYG Q    +D+ IAV  IGYADG P  LS              
Sbjct: 270 KARIAQVKTIAAGSGVSYGHQYIAAKDTRIAVVGIGYADGIPRNLSN-----------RL 318

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           K  ++G +VP +G ITMD  M D+++   ++ G+ + + G D    I  DD A   GT +
Sbjct: 319 KVSLRGRLVPQIGAITMDQLMIDVSEIPEVKTGEIVTLIGKDGPQCITADDWARDLGTIS 378

Query: 355 YDLL 358
           +++L
Sbjct: 379 WEIL 382


>gi|320539399|ref|ZP_08039068.1| alanine racemase 1, PLP-binding, biosynthetic [Serratia symbiotica
           str. Tucson]
 gi|320030524|gb|EFW12534.1| alanine racemase 1, PLP-binding, biosynthetic [Serratia symbiotica
           str. Tucson]
          Length = 359

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 188/366 (51%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID +AL++N   +   +  +   A+VK NAYG G  + A  L +A    F V+ + E + 
Sbjct: 8   IDRSALRHNLQQVRRQAPQSHLIAIVKANAYGHGMLETAHTLQDADC--FGVSRISEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G    ++  ++   N+  V+ S  QL     L    ++HP    ++
Sbjct: 66  LRFGGIVKPILLLEGFFSAEDLPLLVANNIETVVHSSEQL---EALEQAKLAHPLPVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F         + Q   I+S  +CAD+P S     Q+  F    
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLCACHNVAQPVNIMSQFSCADEPGSDATLKQIACFEQFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKS-HPMQTVVTAEARII 243
               G + S+A+SSGILL P+ H Q  RPGI LYG +  D  N S H +Q  +T ++ +I
Sbjct: 183 RGKPG-QRSIAASSGILLWPDAHNQWVRPGIILYGVSPLDNANGSQHLLQPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R  LAGE V YGG     RD+ + V AIGY DGYP +     +     ++L G+    
Sbjct: 242 AVRDHLAGEPVGYGGTWISQRDTRLGVVAIGYGDGYPRS-----APTCTPIWLNGR---- 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              VPI+G+++MDM   D+    + +VGD   ++G  + ++ +A+ +G + Y+L+ ++  
Sbjct: 293 --EVPIVGRVSMDMISVDLGPDATDKVGDEAVLWGQALPVERIAIYAGISVYELVTKLTQ 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|258622401|ref|ZP_05717424.1| alanine racemase [Vibrio mimicus VM573]
 gi|258585315|gb|EEW10041.1| alanine racemase [Vibrio mimicus VM573]
          Length = 375

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 183/369 (49%), Gaps = 28/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + +++  AVVK N YG G   IA   Y  G   F V  +EE ++
Sbjct: 22  INLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIA--RYAIGADAFGVARIEEALQ 79

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 80  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 136

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 137 VDSGMHRLGVRPEQYRDFVNRLHQCAN--VAKPLRYMSHFGCADELDKSTTEEQTELFLS 194

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V+T ++ 
Sbjct: 195 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPVMTLKSH 253

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 254 LIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 302

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+    +  VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 303 VNGRRVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGYELVTKL 362

Query: 362 GTRYAKFYT 370
            +R    Y+
Sbjct: 363 TSRVEMSYS 371


>gi|229525066|ref|ZP_04414471.1| alanine racemase biosynthetic [Vibrio cholerae bv. albensis VL426]
 gi|229338647|gb|EEO03664.1| alanine racemase biosynthetic [Vibrio cholerae bv. albensis VL426]
          Length = 375

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 182/369 (49%), Gaps = 28/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 22  INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIA--RHALGADAFGVARIEEALQ 79

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 80  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 136

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 137 VDSGMHRLGVRPEQYQDFVTRLHQCAN--VAKPLRYMSHFGCADELDKSTTVEQTELFLS 194

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ 
Sbjct: 195 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSH 253

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 254 LIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 302

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 303 VNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKL 362

Query: 362 GTRYAKFYT 370
            +R    Y+
Sbjct: 363 TSRVEMSYS 371


>gi|260775631|ref|ZP_05884528.1| alanine racemase biosynthetic [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608812|gb|EEX34977.1| alanine racemase biosynthetic [Vibrio coralliilyticus ATCC BAA-450]
          Length = 361

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 182/367 (49%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   + + + N++  AVVK N+YG G   +A    +A    F V  +EE ++
Sbjct: 11  IDLDALQHNLKQIKSQAPNSKIMAVVKANSYGHGLRHVAKHATDADA--FGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 69  LRACGVVTPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---EALEQAELDTPVVVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++  DF       + + +    +SH  CAD+      + Q E F  L 
Sbjct: 126 IDSGMHRLGVRPEQYTDFVSRLKACRNVAKPLRYMSHFGCADELDKSTTTEQTELFLALT 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
              +G E SLA+S+G+L   N      RPGI +YG +   DK  +    Q V+T ++ +I
Sbjct: 186 DGCEG-ERSLAASAGLLAWQNSQLDWVRPGIIMYGVSPFNDKTAQQMGYQPVMTLKSHLI 244

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YGG     RD+ + V AIGY DGYP T        +P+   G    + 
Sbjct: 245 AVRDVKAGESVGYGGMWTSQRDTKVGVIAIGYGDGYPRT--------APN---GTPVLVN 293

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +VGD   ++G  +  ++VA   GT  Y+L+ ++ +
Sbjct: 294 GRKVPIAGRVSMDMLTVDLGPDANDKVGDEAILWGQSLPAEEVACHIGTIAYELVTKLTS 353

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 354 RVEMEYS 360


>gi|262190632|ref|ZP_06048868.1| alanine racemase biosynthetic [Vibrio cholerae CT 5369-93]
 gi|20137519|sp|Q9KUY6|ALR1_VIBCH RecName: Full=Alanine racemase 1
 gi|262033497|gb|EEY51999.1| alanine racemase biosynthetic [Vibrio cholerae CT 5369-93]
          Length = 361

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 181/368 (49%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 8   INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIA--RHALGADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 66  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 123 VDSGMHRLGVRPEQYQDFVARLHQCEN--VAKPLRYMSHFGCADELDKSTTVEQTELFLS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ 
Sbjct: 181 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSH 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 240 LIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 289 VNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKL 348

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 349 TSRVEMSY 356


>gi|255747170|ref|ZP_05421113.1| alanine racemase biosynthetic [Vibrio cholera CIRS 101]
 gi|262147254|ref|ZP_06028055.1| alanine racemase biosynthetic [Vibrio cholerae INDRE 91/1]
 gi|255735219|gb|EET90621.1| alanine racemase biosynthetic [Vibrio cholera CIRS 101]
 gi|262031314|gb|EEY49927.1| alanine racemase biosynthetic [Vibrio cholerae INDRE 91/1]
 gi|327483230|gb|AEA77637.1| Alanine racemase, biosynthetic [Vibrio cholerae LMA3894-4]
          Length = 364

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 181/368 (49%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 11  INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIA--RHALGADAFGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 69  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 126 VDSGMHRLGVRPEQYQDFVARLHQCEN--VAKPLRYMSHFGCADELDKSTTVEQTELFLS 183

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ 
Sbjct: 184 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSH 242

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 243 LIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 291

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 292 VNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKL 351

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 352 TSRVEMSY 359


>gi|15640399|ref|NP_230026.1| alanine racemase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121590967|ref|ZP_01678287.1| alanine racemase, biosynthetic [Vibrio cholerae 2740-80]
 gi|153216658|ref|ZP_01950565.1| alanine racemase, biosynthetic [Vibrio cholerae 1587]
 gi|153823514|ref|ZP_01976181.1| alanine racemase, biosynthetic [Vibrio cholerae B33]
 gi|153827276|ref|ZP_01979943.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-2]
 gi|153830458|ref|ZP_01983125.1| alanine racemase, biosynthetic [Vibrio cholerae 623-39]
 gi|227080584|ref|YP_002809135.1| alanine racemase, biosynthetic [Vibrio cholerae M66-2]
 gi|229504955|ref|ZP_04394466.1| alanine racemase biosynthetic [Vibrio cholerae BX 330286]
 gi|229508607|ref|ZP_04398103.1| alanine racemase biosynthetic [Vibrio cholerae B33]
 gi|229516019|ref|ZP_04405470.1| alanine racemase biosynthetic [Vibrio cholerae RC9]
 gi|229526947|ref|ZP_04416344.1| alanine racemase biosynthetic [Vibrio cholerae 12129(1)]
 gi|229606347|ref|YP_002876995.1| alanine racemase [Vibrio cholerae MJ-1236]
 gi|254227117|ref|ZP_04920668.1| alanine racemase, biosynthetic [Vibrio cholerae V51]
 gi|254286204|ref|ZP_04961163.1| alanine racemase, biosynthetic [Vibrio cholerae AM-19226]
 gi|254851683|ref|ZP_05241033.1| alanine racemase [Vibrio cholerae MO10]
 gi|298501269|ref|ZP_07011067.1| alanine racemase [Vibrio cholerae MAK 757]
 gi|9654790|gb|AAF93545.1| alanine racemase, biosynthetic [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547193|gb|EAX57320.1| alanine racemase, biosynthetic [Vibrio cholerae 2740-80]
 gi|124114169|gb|EAY32989.1| alanine racemase, biosynthetic [Vibrio cholerae 1587]
 gi|125620360|gb|EAZ48743.1| alanine racemase, biosynthetic [Vibrio cholerae V51]
 gi|126518959|gb|EAZ76182.1| alanine racemase, biosynthetic [Vibrio cholerae B33]
 gi|148874060|gb|EDL72195.1| alanine racemase, biosynthetic [Vibrio cholerae 623-39]
 gi|149738824|gb|EDM53166.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-2]
 gi|150423619|gb|EDN15561.1| alanine racemase, biosynthetic [Vibrio cholerae AM-19226]
 gi|227008472|gb|ACP04684.1| alanine racemase, biosynthetic [Vibrio cholerae M66-2]
 gi|229335559|gb|EEO01039.1| alanine racemase biosynthetic [Vibrio cholerae 12129(1)]
 gi|229346922|gb|EEO11889.1| alanine racemase biosynthetic [Vibrio cholerae RC9]
 gi|229354375|gb|EEO19302.1| alanine racemase biosynthetic [Vibrio cholerae B33]
 gi|229358013|gb|EEO22929.1| alanine racemase biosynthetic [Vibrio cholerae BX 330286]
 gi|229369002|gb|ACQ59425.1| alanine racemase biosynthetic [Vibrio cholerae MJ-1236]
 gi|254847388|gb|EET25802.1| alanine racemase [Vibrio cholerae MO10]
 gi|297540023|gb|EFH76086.1| alanine racemase [Vibrio cholerae MAK 757]
          Length = 375

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 181/368 (49%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 22  INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIA--RHALGADAFGVARIEEALQ 79

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 80  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 136

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 137 VDSGMHRLGVRPEQYQDFVARLHQCEN--VAKPLRYMSHFGCADELDKSTTVEQTELFLS 194

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ 
Sbjct: 195 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSH 253

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 254 LIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 302

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 303 VNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKL 362

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 363 TSRVEMSY 370


>gi|229512608|ref|ZP_04402078.1| alanine racemase biosynthetic [Vibrio cholerae TMA 21]
 gi|229350390|gb|EEO15340.1| alanine racemase biosynthetic [Vibrio cholerae TMA 21]
          Length = 375

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 181/368 (49%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 22  INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLHHIA--RHALGADAFGVARIEEALQ 79

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 80  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 136

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 137 VDSGMHRLGVRPEQYQDFVARLHQCEN--VAKPLRYMSHFGCADELDKSTTVEQTELFLS 194

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ 
Sbjct: 195 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSH 253

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 254 LIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 302

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 303 VNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKL 362

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 363 TSRVEMSY 370


>gi|311281403|ref|YP_003943634.1| alanine racemase [Enterobacter cloacae SCF1]
 gi|308750598|gb|ADO50350.1| alanine racemase [Enterobacter cloacae SCF1]
          Length = 359

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         F+   +PVIS+      V  L     L    +  P 
Sbjct: 66  LREGGITQPILLLEGF--------FNAGDLPVISAQRLHTAVHNLEQLEALEQATLPEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  +EA  F    S  + + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEEAEAFYQRLSQCQNVRQPVNIVSHFARADEPECGATERQLDV 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVT 237
           F T      G+  S+A+S GILL P  HF   RPGI LYG +    K       +Q V++
Sbjct: 178 FNTFCDGKPGMR-SIAASGGILLWPQSHFDWVRPGIILYGVSPLEGKPWGPDFGLQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG  +  RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWESARDTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+        GD + ++G  + ++ +A  S  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDRAGDPVVLWGEGLPVERIAELSKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|256821804|ref|YP_003145767.1| alanine racemase [Kangiella koreensis DSM 16069]
 gi|256795343|gb|ACV25999.1| alanine racemase [Kangiella koreensis DSM 16069]
          Length = 364

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 192/365 (52%), Gaps = 22/365 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N +++  ++  +R  AVVK +AYG G  ++A AL + G   F V +V+E + 
Sbjct: 8   IDLAALRHNLNTIKTIANGSRVMAVVKADAYGHGLVQVAKALTD-GADMFAVATVQEALS 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L GI   ++ +++ + +L  V+   PQ+       +      + +++D
Sbjct: 67  LRKAEIKTPILLLEGIFNAKDLELVVEHDLQVVLHHWPQIEALQNFNTDKKIQVW-VKLD 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +G NRLG +LQ+ L    ++ +K   L     ++SH A ADDP    +S QLE F     
Sbjct: 126 SGMNRLGFALQD-LALIESTLSKIPSLANPIRLMSHFASADDPEDEFSSTQLEAFDQATK 184

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIIL 244
           +    E S+A+S+GIL     H+   RPG+ LYG +  +      + ++ V++ E++++ 
Sbjct: 185 NIT-TEKSMANSAGILTQKGAHYDWVRPGLLLYGCSPLVGSEASDYDLKPVMSLESQVLA 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           I+    GE   YG      RD+ + + AIGY DGYP       + +S  V+L G+     
Sbjct: 244 IKPIKKGESTGYGRHWFADRDTNLGLVAIGYGDGYPR-----HARNSTPVWLNGR----- 293

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +VP++G+++MDM   D+       VGD + ++G ++  + VA  + T  Y L   + TR
Sbjct: 294 -IVPLVGRVSMDMMAVDLGPDCQDAVGDRVVLWGKELPAESVAPFADTIPYTLFCGV-TR 351

Query: 365 YAKFY 369
             +FY
Sbjct: 352 RVRFY 356


>gi|121729738|ref|ZP_01682178.1| alanine racemase, biosynthetic [Vibrio cholerae V52]
 gi|147674692|ref|YP_001218641.1| alanine racemase [Vibrio cholerae O395]
 gi|121628523|gb|EAX61007.1| alanine racemase, biosynthetic [Vibrio cholerae V52]
 gi|146316575|gb|ABQ21114.1| alanine racemase, biosynthetic [Vibrio cholerae O395]
 gi|227012228|gb|ACP08438.1| alanine racemase, biosynthetic [Vibrio cholerae O395]
          Length = 375

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 181/368 (49%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 22  INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIA--RHALGADAFGVARIEEALQ 79

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 80  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 136

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 137 VDSGMHRLGVRPEQYQDFVARLHQCDN--VAKPLRYMSHFGCADELDKSTTVEQTELFLS 194

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ 
Sbjct: 195 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSH 253

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 254 LIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 302

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 303 VNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKL 362

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 363 TSRVEMSY 370


>gi|212710295|ref|ZP_03318423.1| hypothetical protein PROVALCAL_01354 [Providencia alcalifaciens DSM
           30120]
 gi|212687102|gb|EEB46630.1| hypothetical protein PROVALCAL_01354 [Providencia alcalifaciens DSM
           30120]
          Length = 360

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 187/369 (50%), Gaps = 29/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+ N+R  AVVK NAYG G   +   +    V  F V  + E + 
Sbjct: 8   INRRALRHNLQRVRELAPNSRLIAVVKANAYGHGLIGVGTEI-QGSVDGFGVARLNEALL 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G     + +++ + ++  VI  V QL              + +++D
Sbjct: 67  LRHQGVTKPIVLLEGFFEQSDLQLMVEYHIDTVIHCVEQLEMLESAQLAKKIKVW-MKLD 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL------IISHLACADDPSSHVNSVQLERFR 183
           TG +RLG+  Q A      SF ++L   S       I+SH   AD P       Q+E F+
Sbjct: 126 TGMHRLGILPQHA-----ESFYQRLQSCSNVDLPINIVSHFCQADAPELPTTQKQIECFQ 180

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEA 240
             +S   G E S+A+S+GILL P  H+   RPGI +YG + +  KS     +  V+T ++
Sbjct: 181 QFVSDKPG-EKSIAASAGILLWPEAHYDWVRPGIMMYGASPQEGKSAASFGLLPVMTLKS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R+  AG+ V YG      R++ + V AIGY DGYP  +        PS   G   
Sbjct: 240 TLIAVREHSAGQCVGYGETWCSERNTRLGVVAIGYGDGYPRNV--------PS---GTPV 288

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  VPI+G+I+MDMT+ D+    + +VGD + ++G  + ++++A  +G  NY+LL +
Sbjct: 289 LVNGRKVPIIGRISMDMTVVDLGPDATDKVGDDVILWGNALPVEEIATQTGIINYELLTK 348

Query: 361 IGTRYAKFY 369
           + +R A  Y
Sbjct: 349 LTSRVAMEY 357


>gi|90581360|ref|ZP_01237156.1| alanine racemase [Vibrio angustum S14]
 gi|90437470|gb|EAS62665.1| alanine racemase [Vibrio angustum S14]
          Length = 359

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 187/369 (50%), Gaps = 26/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL +N   +   + N++  AVVK NAYG G  ++A  L N  V  + V  +EE + 
Sbjct: 8   IDTEALAHNLGLIRQHAPNSKVLAVVKANAYGHGLLRVAQTLSN--VDAYGVARIEEALI 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL--Q 127
           LR       I +L G + P    ++   N+  V+ S+ QL     L    + +P  +  +
Sbjct: 66  LRAGGIVKPILLLEGFYAPSDLPVLVTNNIHTVVHSIEQL---EALEQTELDNPVQVWVK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++  DF    +  + + +    ISH   ADD SS +   QL+ F  L 
Sbjct: 123 IDTGMHRLGVRPEDLTDFMARLNACENVAKPLRFISHFGNADDLSSDITLKQLDTFLDLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQTVVTAEAR 241
             Y+G E SLA+S+GIL  P+   +  RPGI +YG      +++   ++ ++ V+T  + 
Sbjct: 183 QDYQG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFNESERFASAYDLKPVMTLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    GE V YGG     RD+ + V AIGY DGYP T        +P+   G    
Sbjct: 242 LIAVRDVKKGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRT--------APN---GTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VP+ G+++MDM   D+      +VGD   ++G  +  + VA   GT  Y+L+ ++
Sbjct: 291 VNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDTATLWGEGLPSEIVAEHIGTIAYELVTKL 350

Query: 362 GTRYAKFYT 370
             R A  YT
Sbjct: 351 TPRVAMAYT 359


>gi|262166870|ref|ZP_06034592.1| alanine racemase biosynthetic [Vibrio cholerae RC27]
 gi|262024700|gb|EEY43379.1| alanine racemase biosynthetic [Vibrio cholerae RC27]
          Length = 364

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 181/368 (49%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 11  INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIA--RHALGADAFGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 69  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 126 VDSGMHRLGVRPEQYQDFVARLHQCDN--VAKPLRYMSHFGCADELDKSTTVEQTELFLS 183

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ 
Sbjct: 184 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSH 242

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 243 LIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 291

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 292 VNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKL 351

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 352 TSRVEMSY 359


>gi|148981621|ref|ZP_01816478.1| alanine racemase [Vibrionales bacterium SWAT-3]
 gi|145960806|gb|EDK26141.1| alanine racemase [Vibrionales bacterium SWAT-3]
          Length = 358

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 184/368 (50%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   + + +   +  +VVK N YG G   IA    N+    F V  +EE ++
Sbjct: 8   IDLSALEHNLRQIKSKAPQCKVMSVVKANGYGHGLLHIAKHSKNSDA--FGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       + +L G + PG   I+   N+  V+    QL   S L +  +  P    L+
Sbjct: 66  LRAGGIVQPVLLLEGFYSPGDLPILVTNNIQTVVHCEEQL---SALENSVLESPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 123 VDSGMHRLGVRSEQYKDFVERLHQCPN--VAKPLRYMSHFGCADELDRTTTVEQTELFLS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEAR 241
           L    +G E SLA+S+G+L  P+ H    RPGI  YG +  ++KS        V+T  + 
Sbjct: 181 LTDGCEG-ERSLAASAGLLAWPDSHLDWVRPGIISYGVSPFVDKSAQELGFMPVMTLTSH 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R   AGE V YGG     RD+ + V AIGY DGYP T        +P+   G   F
Sbjct: 240 LIAVRDVKAGESVGYGGNWTSERDTKVGVIAIGYGDGYPRT--------APN---GTPVF 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+      +VGD   ++G ++  ++VA   GT  Y+L+ ++
Sbjct: 289 VNGRKVPIAGRVSMDMLTVDLGPDAQDKVGDEATLWGKELPSEEVAEHIGTIAYELVTKL 348

Query: 362 GTRYAKFY 369
            +R A  Y
Sbjct: 349 TSRVAMEY 356


>gi|258625986|ref|ZP_05720851.1| alanine racemase [Vibrio mimicus VM603]
 gi|258581734|gb|EEW06618.1| alanine racemase [Vibrio mimicus VM603]
          Length = 375

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 183/369 (49%), Gaps = 28/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + +++  A VK N YG G   IA   Y  G   F V  +EE ++
Sbjct: 22  INLDALQHNLQRVKQQAPHSKIMAAVKANGYGHGLRHIA--RYALGADAFGVARIEEALQ 79

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 80  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 136

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+      + Q E F +
Sbjct: 137 VDSGMHRLGVRPEQYRDFVNRLHQCAN--VAKPLRYMSHFGCADELDKSTTAEQTELFLS 194

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V+T ++ 
Sbjct: 195 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPVMTLKSH 253

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 254 LIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 302

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+    +  VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 303 VSGRRVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGYELVTKL 362

Query: 362 GTRYAKFYT 370
            +R    Y+
Sbjct: 363 TSRVEMSYS 371


>gi|297582256|ref|ZP_06944171.1| alanine racemase [Vibrio cholerae RC385]
 gi|297533514|gb|EFH72360.1| alanine racemase [Vibrio cholerae RC385]
          Length = 375

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 181/368 (49%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 22  INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIA--RHALGADAFGVARIEEALQ 79

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 80  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 136

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +D+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 137 IDSGMHRLGVRPEQYQDFVARLHQCEN--VAKPLRYMSHFGCADELDKSTTVEQTELFLS 194

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ 
Sbjct: 195 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSH 253

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 254 LIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 302

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 303 VNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKL 362

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 363 TSRVEMSY 370


>gi|254481208|ref|ZP_05094453.1| alanine racemase [marine gamma proteobacterium HTCC2148]
 gi|214038371|gb|EEB79033.1| alanine racemase [marine gamma proteobacterium HTCC2148]
          Length = 360

 Score =  162 bits (411), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 175/367 (47%), Gaps = 21/367 (5%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL AL++N      L+   +   VVK N YG G   +A  ++        V  +EE +
Sbjct: 8   RLDLAALRHNLAHARQLAPECKVMCVVKANGYGHGALNVA-RVFAPMADALAVACIEEAI 66

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR    +  I +L G+   QE II       V+    Q  ++ +           L++D
Sbjct: 67  ELRDGGIETPILLLQGVFEAQELIIASQQNFWVMVDNRQHLYWLEQARLPAPVTCWLKID 126

Query: 130 TGFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           TG +RLG+  +EA +F    +S   + G+L +  +H A AD+      + QL  F ++ +
Sbjct: 127 TGMHRLGVQPEEAAEFHQRLSSCENRTGEL-VTCTHFASADELDKPQTTEQLALFESITA 185

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARII 243
              G   S A+SSG+L  PN H+   RPG  LYG +     +HP    +  V+T  + +I
Sbjct: 186 DLPGPR-SAANSSGLLGWPNSHYDWIRPGYMLYGNS-PFTATHPNTDTLHPVMTLCSAVI 243

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            IR   +GE V Y       R S IA  +IGY DGYP   +            G    I 
Sbjct: 244 SIRNVASGESVGYAANWTAQRPSRIATVSIGYGDGYPRLAAN-----------GTPVLIN 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G   P+ G+++MDM   DITD   +++GD + ++G ++ + +VA  +GT  Y+L  R+  
Sbjct: 293 GQRAPLAGRVSMDMITVDITDLDDVKLGDQVILWGEELPVSEVAAHAGTIGYELTTRMPA 352

Query: 364 RYAKFYT 370
           R  +  T
Sbjct: 353 RTPRVVT 359


>gi|311693521|gb|ADP96394.1| alanine racemase [marine bacterium HP15]
          Length = 358

 Score =  162 bits (410), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 181/366 (49%), Gaps = 22/366 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL+ N+ +    +G AR  AVVK + YG G   +A AL ++    + V  +EE  
Sbjct: 8   RIDLDALRRNFQTAQRRAGGARVMAVVKADGYGHGIGPVASAL-DSLAPKYAVACLEEAR 66

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            +R       + +L G+H   +      +   PV  S  QL +  +L +      + L+V
Sbjct: 67  AIRETGLIQSVVLLQGVHAEADIDECARSGFEPVFHSFQQLAWLERLDTWPA---FWLKV 123

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLI 186
           ++G NRLG    E L    +          L+  ++H ACADDP S + + Q   F    
Sbjct: 124 NSGMNRLGFHPDE-LAGVMSRLQAMSADTELLGFVTHFACADDPDSAMTAQQTAVFEKAT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
           S +  +  S+A+S+         F  +RPGI LYGG+  +  + P   ++ V++ EA +I
Sbjct: 183 SSFPDLMKSVANSAAHFRPGQPMFDWSRPGIMLYGGSPMVGTTGPELGLEPVMSLEAPLI 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R   AGE V YG      RD+ + + AIGY DGYP         ++P+        I 
Sbjct: 243 STRMVPAGESVGYGASWVADRDTRMGMVAIGYGDGYPRHAG----TNTPAA-------IN 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  + ++G+++MDM   D+T++   + GD ++++G  + +D+VA  +GT +Y+L+  I  
Sbjct: 292 GQRIRLIGRVSMDMLAVDLTNAPDAKEGDSVELWGRTVGVDEVAACAGTISYELMTGITG 351

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 352 RVPRQY 357


>gi|289548107|ref|YP_003473095.1| alanine racemase [Thermocrinis albus DSM 14484]
 gi|289181724|gb|ADC88968.1| alanine racemase [Thermocrinis albus DSM 14484]
          Length = 337

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 192/366 (52%), Gaps = 37/366 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           L+I+  AL  N   +N  +G  +  AVVK NAYG+G   IA  L     V  F V  VEE
Sbjct: 5   LEINRDALLQNVKRINTFTGK-KLIAVVKANAYGVGATLIASLLEPLEEVAAFAVACVEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           GV+LR    +  I VL G+ P + + +   NL PV+S    L         G    + ++
Sbjct: 64  GVELREAGVKKPILVLGGVLPEELEELVRWNLTPVVSHPSHLKALE-----GSFVKFHVK 118

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  RLG  L+E +            ++  +++HL+   D S  +   Q+E FR ++S
Sbjct: 119 YDTGMGRLGF-LEEIIQDR---------RVEGVMTHLSHPADRSFTLK--QIETFRKIVS 166

Query: 188 HYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVVTAEARIIL 244
           HY+G++   L SS+G++   +Y   + R G++LYG  +K   S+P++    ++ +ARII 
Sbjct: 167 HYRGVKWVHLESSAGLIYRVDYATHV-RVGLALYG--EKPLSSYPIELSPALSLKARIIS 223

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++   AG  VSYG    L RD+ + V AIGYADG   +LSG             + + +G
Sbjct: 224 VKVLPAGHRVSYGDSCVLKRDTRVGVVAIGYADGLLKSLSG-----------KARFYYRG 272

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             VP+LG ITMDMTM D++ S+  EVGD+++I GP      +A  +GT  Y+L+  +  R
Sbjct: 273 VPVPLLGNITMDMTMVDLS-SVEAEVGDWVEIVGPHQSFTQLAKEAGTIPYELMSLLSRR 331

Query: 365 YAKFYT 370
             + + 
Sbjct: 332 VHRVFA 337


>gi|153840096|ref|ZP_01992763.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
 gi|149746306|gb|EDM57372.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
          Length = 361

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 186/367 (50%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   + A +  ++  AVVK N YG G   +A    +A    F V  +EE ++
Sbjct: 11  IDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHANHADA--FGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 69  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLI---ALEQADLETPVVVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++  +F         + +    +SH  CAD+  S +   Q+E F +L 
Sbjct: 126 IDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQIELFMSLT 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           S  +G E SLA+S+G+L  P    +  RPGI +YG +   DK  +    Q V+T ++ +I
Sbjct: 186 SGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPVMTLKSHLI 244

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YGG     RD+ + V A+GY DGYP +        +P+   G   ++ 
Sbjct: 245 AVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRS--------APN---GTPVWVN 293

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y+L+ ++  
Sbjct: 294 GRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAYELVTKLTP 353

Query: 364 RYAKFYT 370
           R    YT
Sbjct: 354 RVEMEYT 360


>gi|308094758|ref|ZP_05891769.2| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|308095056|ref|ZP_07663149.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|308125857|ref|ZP_07663541.1| alanine racemase [Vibrio parahaemolyticus K5030]
 gi|308126480|ref|ZP_05910422.2| alanine racemase [Vibrio parahaemolyticus AQ4037]
 gi|308087451|gb|EFO37146.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|308089684|gb|EFO39379.1| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|308109426|gb|EFO46966.1| alanine racemase [Vibrio parahaemolyticus AQ4037]
 gi|308113312|gb|EFO50852.1| alanine racemase [Vibrio parahaemolyticus K5030]
          Length = 361

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 186/367 (50%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   + A +  ++  AVVK N YG G   +A    +A    F V  +EE ++
Sbjct: 11  IDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHANHADA--FGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 69  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLI---ALEQADLETPVVVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++  +F         + +    +SH  CAD+  S +   Q+E F +L 
Sbjct: 126 IDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQIELFMSLT 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           S  +G E SLA+S+G+L  P    +  RPGI +YG +   DK  +    Q V+T ++ +I
Sbjct: 186 SGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPVMTLKSHLI 244

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YGG     RD+ + V A+GY DGYP +        +P+   G   ++ 
Sbjct: 245 AVREVKQGESVGYGGIWTSERDTKVGVIAVGYGDGYPRS--------APN---GTPVWVN 293

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y+L+ ++  
Sbjct: 294 GRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAYELVTKLTP 353

Query: 364 RYAKFYT 370
           R    YT
Sbjct: 354 RVEMEYT 360


>gi|89075968|ref|ZP_01162340.1| alanine racemase [Photobacterium sp. SKA34]
 gi|89048317|gb|EAR53896.1| alanine racemase [Photobacterium sp. SKA34]
          Length = 359

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 186/369 (50%), Gaps = 26/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL +N   +   + N++  AVVK NAYG G  ++A  L N  V  + V  +EE + 
Sbjct: 8   IDTEALAHNLGLIRQHAPNSKVLAVVKANAYGHGLLRVAQTLSN--VDAYGVARIEEALI 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL--Q 127
           LR       I +L G + P    ++   N+  V+ S+ QL     L    + +P  +  +
Sbjct: 66  LRAGGIVKPILLLEGFYAPSDLPVLVTNNIHTVVHSIEQL---EALEQTELDNPVQVWVK 122

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++  DF    +  + + +    ISH   ADD SS +   QL+ F  L 
Sbjct: 123 IDTGMHRLGVRPEDLTDFMVRLNACENVAKPLRFISHFGNADDLSSDITLKQLDTFLDLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVVTAEAR 241
             Y+G E SLA+S+GIL  P+   +  RPGI +YG +      +   S+ ++ V+T  + 
Sbjct: 183 QDYQG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFNESVRFAASYDLKPVMTLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    GE V YGG     RD+ + V AIGY DGYP T        +P+   G    
Sbjct: 242 LIAVRDVKQGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRT--------APN---GTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VP+ G+++MDM   D+      +VGD   ++G  +  + VA   GT  Y+L+ ++
Sbjct: 291 VNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDTATLWGEGLPAEVVAEHIGTIAYELVTKL 350

Query: 362 GTRYAKFYT 370
             R A  YT
Sbjct: 351 TPRVAMAYT 359


>gi|119776189|ref|YP_928929.1| alanine racemase [Shewanella amazonensis SB2B]
 gi|254802373|sp|A1SA53|ALR_SHEAM RecName: Full=Alanine racemase
 gi|119768689|gb|ABM01260.1| alanine racemase [Shewanella amazonensis SB2B]
          Length = 364

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 187/372 (50%), Gaps = 26/372 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALY----NAGVQDFF 61
           F R +I   ALK N   +  ++  ++  AVVK N YG G   +A  L     NA    F 
Sbjct: 4   FPRAEISSRALKANLKRLRQIAPGSKVMAVVKANGYGHGLLNVAEVLTDAHSNADADGFG 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           +  +EE +++R     AR+ +L G    ++  ++ + ++  V+  V QL     L S  +
Sbjct: 64  LARLEEALEVRAGGVSARLLLLEGFFRSEDLPLLVEHDIDTVVHHVSQLDM---LESVSL 120

Query: 121 SHPYA--LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           S P    L++D+G +RLG    E  D +     N  + +   +++H +CAD+P     + 
Sbjct: 121 SKPVTVWLKIDSGMHRLGFHASEFKDVYQRLQQNPNVAKPVHLMTHFSCADEPQKDFTAT 180

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQT 234
           Q+  F  L     G + +LA+S+G+L  P       RPGI+LYG +     +  +H ++ 
Sbjct: 181 QMAHFNALTQGLPG-DRTLANSAGVLYWPQSQADWIRPGIALYGVSPVAGDLGSNHGLEP 239

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   +++I +R+  AGE V YG     +RD+ + V AIGY DGYP         ++P  
Sbjct: 240 AMELVSQLIAVREHSAGESVGYGAYWTASRDTRLGVVAIGYGDGYP--------RNAPE- 290

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G  VPI+G+++MDM   D+    + +VGD   ++G ++ +++VA   GT  
Sbjct: 291 --GTPVLVNGRRVPIVGRVSMDMLTVDLGPDAADKVGDRALLWGKELPVEEVAERIGTIA 348

Query: 355 YDLLVRIGTRYA 366
           Y+L+ ++  R A
Sbjct: 349 YELVTKLTPRVA 360


>gi|297624657|ref|YP_003706091.1| alanine racemase [Truepera radiovictrix DSM 17093]
 gi|297165837|gb|ADI15548.1| alanine racemase [Truepera radiovictrix DSM 17093]
          Length = 374

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 184/372 (49%), Gaps = 27/372 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I L AL  N  S+ A +  A+    VK NAYG G  ++A  L   GV  F V + +E +
Sbjct: 11  EISLRALARNLASLRART-RAQLLVPVKANAYGHGAPEVARQLERLGVPWFGVATADEAL 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---L 126
           +LR     A I +   ++ G E +I     + V+ +         ++    S P A   L
Sbjct: 70  ELRGAGISADILIFGPVYEGLEALIAQGVALSVVDA----RSAEAVVRAAGSVPGARVHL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           + DTG  RLG  L   L         +   L  + +HLA AD+P S    VQL RF   +
Sbjct: 126 KTDTGMGRLGEPLAATLKTAERLSRARGVTLEGLWTHLAAADEPDSSFTQVQLARFSDTL 185

Query: 187 SHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP-MQTVVTA 238
           +     GI   L   A+S+ +   P  HF L RPGI++YG   +  I    P +  V+T 
Sbjct: 186 AALGRAGITVPLKHAANSAALFAHPASHFDLVRPGIAVYGYHASPFIAALAPELTPVMTL 245

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A +  +++  AG  +SYGG  +  RD+ +A    GYADGYP  LS   + H+       
Sbjct: 246 SAPVTFVKRVAAGTPISYGGLWRAPRDTTVATVRFGYADGYPRGLSA--TPHA------- 296

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDL 357
           +  ++G + PI+G++ MD  M D+ D L++ VG+   +FGP+    +D+A   GT +Y+L
Sbjct: 297 RVRLQGRLCPIVGRVCMDQLMVDVGD-LTVTVGERAVLFGPEGPTAEDLAGGVGTISYEL 355

Query: 358 LVRIGTRYAKFY 369
           L ++G R A+ Y
Sbjct: 356 LTQLGRRVARSY 367


>gi|330004917|ref|ZP_08305062.1| alanine racemase [Klebsiella sp. MS 92-3]
 gi|328536477|gb|EGF62821.1| alanine racemase [Klebsiella sp. MS 92-3]
          Length = 359

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 181/367 (49%), Gaps = 25/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G    ++  +I    L   + S  QL   + L    +  P    ++
Sbjct: 66  LRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQL---AALEQADLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F    S  K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +        K    Q V+T  + +
Sbjct: 183 EGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGKDFGCQPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYP--------RAAPS---GTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|269961478|ref|ZP_06175842.1| alanine racemase [Vibrio harveyi 1DA3]
 gi|269833855|gb|EEZ87950.1| alanine racemase [Vibrio harveyi 1DA3]
          Length = 369

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 193/382 (50%), Gaps = 29/382 (7%)

Query: 1   MHSNEFLRLK-----IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           M SN    +K     IDL+AL++N   +   +  ++  AVVK N YG G   +A    +A
Sbjct: 4   MMSNAMSYMKAAMACIDLSALQHNLQRVKEQAPESKVMAVVKANGYGHGLRHVAKHATHA 63

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
               F V  +EE ++LR       I +L G + PG   ++   N+  V+    QL   + 
Sbjct: 64  DA--FGVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---AA 118

Query: 115 LMSCGVSHPYA--LQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPS 171
           L    +  P    L++D+G +RLG+  ++  +F T       + +    +SH  CAD+  
Sbjct: 119 LEQADLETPVVVWLKIDSGMHRLGVRPEQYDEFITRLKECPNVAKPLRYMSHFGCADELD 178

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINK 228
           + + + Q++ F +L +  +G E SLA+S+G+L  P       RPGI +YG +   DK  +
Sbjct: 179 NSITTEQIDLFMSLTAGCQG-ERSLAASAGLLAWPQSQLDWVRPGIIMYGVSPFDDKTAQ 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               + V+T ++ +I +R+   GE V YGG     RD+ + V A+GY DGYP T      
Sbjct: 238 DMGYKPVMTLKSHLIAVREVKKGESVGYGGMWTSERDTKVGVIAVGYGDGYPRT------ 291

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
             +P+   G   F+ G  VPI G+++MDM   D+    + +V D   ++G D+ +++VA 
Sbjct: 292 --APN---GTPVFVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKDLPVEEVAS 346

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
             GT  Y+L+ ++ +R    Y+
Sbjct: 347 HIGTIAYELVTKLTSRVEMEYS 368


>gi|290476881|ref|YP_003469792.1| alanine racemase 1, PLP-binding, biosynthetic [Xenorhabdus bovienii
           SS-2004]
 gi|289176225|emb|CBJ83030.1| alanine racemase 1, PLP-binding, biosynthetic [Xenorhabdus bovienii
           SS-2004]
          Length = 359

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 185/366 (50%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +   + +++  AVVK NAYG G  ++A  + +A    F V  + E + 
Sbjct: 8   IDRRALRHNLQQVRVKAPDSKLVAVVKANAYGHGFLEVAYTMEDA--DSFGVARIGEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  +   N I  V+ S+ QL     L    +SHP    ++
Sbjct: 66  LRNGGIVKPILLLEGFFEAADLPVLVVNHIETVVHSIEQL---EALEQANLSHPIKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+ + EA +F    S    + Q   I+SH + AD+ +      Q++RF   I
Sbjct: 123 LDTGMHRLGVRIDEAEEFYQRLSCCHNVEQPVNIVSHFSRADELTVDTTPQQIDRFMAFI 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           +   G E S+A+S GILL P  H    RPGI +YG +   DK      +   +T ++ +I
Sbjct: 183 ADKSG-EKSIAASGGILLWPQAHLDWVRPGIMMYGASPIADKTAADFNLIPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK  + E V YGG     RD+ + V A+GY DGYP +        +PS   G    I 
Sbjct: 242 AVRKHKSDESVGYGGTWISERDTTLGVVAVGYGDGYPRS--------APS---GTPVLIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP++G+++MDM   D+      +VGD + ++G  + ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GRKVPLVGRVSMDMITVDLGPECYDKVGDEVTLWGNILPVEKIAEHTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RVVMEY 356


>gi|152972916|ref|YP_001338062.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957765|gb|ABR79795.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 359

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 25/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G    ++  +I    L   + S  QL   + L    +  P    ++
Sbjct: 66  LRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQL---AALEQADLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F    S  K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +   ++S       Q V+T  + +
Sbjct: 183 EGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGRDFGCQPVMTLSSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYP--------RAAPS---GTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|330501639|ref|YP_004378508.1| alanine racemase [Pseudomonas mendocina NK-01]
 gi|328915926|gb|AEB56757.1| alanine racemase [Pseudomonas mendocina NK-01]
          Length = 358

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 182/370 (49%), Gaps = 32/370 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+ +N+      +   +  AVVK NAYG G  ++  AL++     F V  +EE  +
Sbjct: 8   VDLSAIAHNYAVAKRCAPGRQAFAVVKANAYGHGVREVVTALHDLA-DGFAVACLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YALQ 127
           +R    +AR+ +L G     E  I     L  VI    Q      L++  +  P    L+
Sbjct: 67  VRAMHGEARVLLLEGCFEASEYAIAAQLGLDLVIQGAAQ---AEALLASDLVRPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG        +     N +++ +L+L+ SH ACAD+    +   Q+ERF  L+
Sbjct: 124 LDSGMHRLGFDAANLRHWYARLENAEQVNELNLL-SHFACADERGHPLTEQQVERFLDLL 182

Query: 187 ----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAE 239
               SH      SLA+S+ +L  P  H    RPGI LYG T   +   +   ++  +T  
Sbjct: 183 DLDFSHR-----SLANSAAVLTIPAAHMDWLRPGIMLYGATPFAELSARELGLKPAMTLA 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           AR+I +R+   GE V YG      R S IA  + GYADGYP         H+PS   G  
Sbjct: 238 ARVIAVREVAIGESVGYGASWVAQRPSRIATVSCGYADGYP--------RHAPS---GTP 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             ++G    + G+++MDM   DITD    +V   ++++G ++ LD+VA A  T  Y+LL 
Sbjct: 287 VLVEGQRAALAGRVSMDMLTVDITDLPEADVDSPVELWGANLPLDEVAAACSTIGYELLS 346

Query: 360 RIGTRYAKFY 369
           ++  R  + Y
Sbjct: 347 KVTARVPRRY 356


>gi|152979091|ref|YP_001344720.1| alanine racemase [Actinobacillus succinogenes 130Z]
 gi|171704339|sp|A6VP88|ALR_ACTSZ RecName: Full=Alanine racemase
 gi|150840814|gb|ABR74785.1| alanine racemase [Actinobacillus succinogenes 130Z]
          Length = 358

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 188/368 (51%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK+N   ++  + +++  A+VK NAYG G E +A  +    V  F V  +EE +
Sbjct: 7   KISSLALKHNLELIHQKAPDSKMIAIVKANAYGHGVEFVASTVEEQ-VDGFGVARIEEAL 65

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    ++  +I   N+  V+ +  QL     L    + +P    L
Sbjct: 66  TLRSKGIIKPILLLEGFFSAKDLPVIAVNNIQTVVHNREQL---EALKQTKLPNPIKVWL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E  D+      KK   +  +I   SH + AD+  S    +QL RF 
Sbjct: 123 KIDTGMHRLGVALDEVEDYVEEL--KKCANVEPLIGYVSHFSRADELDSDYTRIQLNRFL 180

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
              +  KG    +A+S GIL  P+ H +  RPGI +YG   TD  +    +  V+T  + 
Sbjct: 181 QA-TEDKGGPRCIAASGGILFWPDSHLEWIRPGIIMYGVSPTDTPSSEFGLIPVMTLTSS 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     +D+ I V AIGY DGYP  +        PS   G   +
Sbjct: 240 LIAVRRHKAGEPVGYGGTWISKKDTKIGVIAIGYGDGYPRNI--------PS---GTPVY 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G +VPI+G+++MDM   D+ +  + +VGD + ++G ++ ++ VA   G  +Y+L+ ++
Sbjct: 289 INGRIVPIVGRVSMDMITVDLGEDCTDKVGDEVILWGKELPIETVAKHMGILSYELMTKL 348

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 349 TPRVLTEY 356


>gi|28899508|ref|NP_799113.1| alanine racemase [Vibrio parahaemolyticus RIMD 2210633]
 gi|34098474|sp|Q87L78|ALR1_VIBPA RecName: Full=Alanine racemase 1
 gi|28807744|dbj|BAC60997.1| alanine racemase, biosynthetic [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 358

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 186/367 (50%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   + A +  ++  AVVK N YG G   +A    +A    F V  +EE ++
Sbjct: 8   IDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHANHADA--FGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 66  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLI---ALEQADLETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++  +F         + +    +SH  CAD+  S +   Q+E F +L 
Sbjct: 123 IDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQIELFMSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           S  +G E SLA+S+G+L  P    +  RPGI +YG +   DK  +    Q V+T ++ +I
Sbjct: 183 SGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPVMTLKSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YGG     RD+ + V A+GY DGYP +        +P+   G   ++ 
Sbjct: 242 AVREVKQGESVGYGGIWTSERDTKVGVIAVGYGDGYPRS--------APN---GTPVWVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y+L+ ++  
Sbjct: 291 GRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAYELVTKLTP 350

Query: 364 RYAKFYT 370
           R    YT
Sbjct: 351 RVEMEYT 357


>gi|328472359|gb|EGF43229.1| alanine racemase [Vibrio parahaemolyticus 10329]
          Length = 358

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 186/367 (50%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   + A +  ++  AVVK N YG G   +A    +A    F V  +EE ++
Sbjct: 8   IDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHANHADA--FGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 66  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLI---ALEQADLETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++  +F         + +    +SH  CAD+  S +   Q+E F +L 
Sbjct: 123 IDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQIELFMSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           S  +G E SLA+S+G+L  P    +  RPGI +YG +   DK  +    Q V+T ++ +I
Sbjct: 183 SGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPVMTLKSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YGG     RD+ + V A+GY DGYP +        +P+   G   ++ 
Sbjct: 242 AVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRS--------APN---GTPVWVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y+L+ ++  
Sbjct: 291 GRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAYELVTKLTP 350

Query: 364 RYAKFYT 370
           R    YT
Sbjct: 351 RVEMEYT 357


>gi|218556610|ref|YP_002389524.1| alanine racemase [Escherichia coli IAI1]
 gi|218363379|emb|CAR01032.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           IAI1]
          Length = 359

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 182/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSIGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|159029814|emb|CAO90868.1| alr [Microcystis aeruginosa PCC 7806]
          Length = 378

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 181/364 (49%), Gaps = 25/364 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID +AL+ N   + AL +      AV+K +AYG G  K+A ++  AG Q   + ++ E
Sbjct: 11  VEIDRSALQQNVRKVKALLAPKTELMAVIKADAYGHGAVKVANSVLEAGAQSLAIATIGE 70

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR     A I +L  ++ P +   +    L P +  + Q+  ++ +M       P  
Sbjct: 71  GIELREAGIVAPIMILGAVNTPEEVAALAHWQLQPTLVQIEQVRIFAAVMRRLEQRLPVH 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +RLG        F          +++ I SH A ADDP+  +  +Q +RF+  
Sbjct: 131 IKLDTGMSRLGTPWHNGTKFVEQVLEAPNLKIASIYSHFATADDPNPEIMQLQRQRFQQA 190

Query: 186 ISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           I+  K  G       LA+S+  L   + H+   R G++LYG    D +    P+Q V+  
Sbjct: 191 IAELKSKGYHPPCLHLANSAATLSDRSLHYDRVRVGLALYGLYPADHLTDKVPLQPVLQV 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +ARI  ++   AG  VSYG Q    +D+ IAV  IGYADG P  LS              
Sbjct: 251 KARIAQVKTIAAGSGVSYGHQYIAAKDTRIAVVGIGYADGIPRNLSN-----------RL 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           K  ++G +VP +G ITMD  M D+++   ++ G+ + + G D    I  DD A   GT +
Sbjct: 300 KVSLRGRLVPQIGAITMDQLMIDVSEIPEVKTGEIVTLIGKDGLQCITADDWARDLGTIS 359

Query: 355 YDLL 358
           +++L
Sbjct: 360 WEIL 363


>gi|238892526|ref|YP_002917260.1| alanine racemase [Klebsiella pneumoniae NTUH-K2044]
 gi|238544842|dbj|BAH61193.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 359

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 25/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G    ++  +I    L   + S  QL   + L    +  P    ++
Sbjct: 66  LRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQL---AALEQADLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F    S  K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +   ++S       Q V+T  + +
Sbjct: 183 EGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGRDFGCQPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYP--------RAAPS---GTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|206581084|ref|YP_002241006.1| alanine racemase [Klebsiella pneumoniae 342]
 gi|290512391|ref|ZP_06551758.1| alanine racemase [Klebsiella sp. 1_1_55]
 gi|206570142|gb|ACI11918.1| alanine racemase [Klebsiella pneumoniae 342]
 gi|289775386|gb|EFD83387.1| alanine racemase [Klebsiella sp. 1_1_55]
          Length = 359

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 181/367 (49%), Gaps = 25/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRDLAPASKLVAVVKANAYGHGLLETARTLTDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G    ++  +I    L   + S  QL   + L    +  P    ++
Sbjct: 66  LRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQL---AALEQADLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F    S  K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +        K    Q V+T  + +
Sbjct: 183 EGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGKDFGCQPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYP--------RAAPS---GTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|262163859|ref|ZP_06031599.1| alanine racemase biosynthetic [Vibrio mimicus VM223]
 gi|262027839|gb|EEY46504.1| alanine racemase biosynthetic [Vibrio mimicus VM223]
          Length = 364

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 183/369 (49%), Gaps = 28/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + +++  AVVK N YG G   IA   Y  G   F V  +EE ++
Sbjct: 11  INLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIA--RYAIGADAFGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +  G   ++   N+  V+    QL     L    +  P    L+
Sbjct: 69  LRASGVVKPILLLEGFYSQGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+      + Q E F +
Sbjct: 126 VDSGMHRLGVRPEQYRDFVNRLHQCVN--VAKPLRYMSHFGCADELDKSTTAEQTELFLS 183

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V+T ++ 
Sbjct: 184 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPVMTLKSH 242

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 243 LIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 291

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+    +  VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 292 VNGRRVPIAGRVSMDMLTVDLGPEAADCVGDEAMLWGRELPVEEVAAHIGTLGYELVTKL 351

Query: 362 GTRYAKFYT 370
            +R    Y+
Sbjct: 352 TSRVEMSYS 360


>gi|288937652|ref|YP_003441711.1| alanine racemase [Klebsiella variicola At-22]
 gi|288892361|gb|ADC60679.1| alanine racemase [Klebsiella variicola At-22]
          Length = 359

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 181/367 (49%), Gaps = 25/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRDLAPASKLVAVVKANAYGHGLLETARTLTDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G    ++  +I    L   + S  QL   + L    +  P    ++
Sbjct: 66  LRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQL---AALEQADLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F    S  K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +        K    Q V+T  + +
Sbjct: 183 EGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGKDFGCQPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYP--------RAAPS---GTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLAVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|301021579|ref|ZP_07185579.1| alanine racemase [Escherichia coli MS 69-1]
 gi|300397977|gb|EFJ81515.1| alanine racemase [Escherichia coli MS 69-1]
          Length = 359

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWGSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|193067831|ref|ZP_03048797.1| alanine racemase [Escherichia coli E110019]
 gi|192958806|gb|EDV89243.1| alanine racemase [Escherichia coli E110019]
          Length = 359

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 182/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P+IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPMISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|218707674|ref|YP_002415193.1| alanine racemase [Escherichia coli UMN026]
 gi|293402691|ref|ZP_06646788.1| alanine racemase [Escherichia coli FVEC1412]
 gi|293407785|ref|ZP_06651625.1| alanine racemase [Escherichia coli B354]
 gi|298378219|ref|ZP_06988103.1| alanine racemase [Escherichia coli FVEC1302]
 gi|300899831|ref|ZP_07118045.1| alanine racemase [Escherichia coli MS 198-1]
 gi|218434771|emb|CAR15704.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           UMN026]
 gi|284924146|emb|CBG37245.1| alanine racemase [Escherichia coli 042]
 gi|291429606|gb|EFF02620.1| alanine racemase [Escherichia coli FVEC1412]
 gi|291472036|gb|EFF14518.1| alanine racemase [Escherichia coli B354]
 gi|298280553|gb|EFI22054.1| alanine racemase [Escherichia coli FVEC1302]
 gi|300356602|gb|EFJ72472.1| alanine racemase [Escherichia coli MS 198-1]
          Length = 359

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCDATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|153803236|ref|ZP_01957822.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-3]
 gi|124121216|gb|EAY39959.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-3]
          Length = 376

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 180/371 (48%), Gaps = 33/371 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 22  INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIA--RHALGADAFGVARIEEALQ 79

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 80  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 136

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLER 181
           VD+G +RLG+   E     +  F  +L Q   +      +SH  CAD+        Q E 
Sbjct: 137 VDSGMHRLGVVRPE----QYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQTEL 192

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTA 238
           F +L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T 
Sbjct: 193 FLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTL 251

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G 
Sbjct: 252 KSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT--------APN---GT 300

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+
Sbjct: 301 PVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELV 360

Query: 359 VRIGTRYAKFY 369
            ++ +R    Y
Sbjct: 361 TKLTSRVEMSY 371


>gi|218692336|ref|YP_002400548.1| alanine racemase [Escherichia coli ED1a]
 gi|331660619|ref|ZP_08361551.1| alanine racemase [Escherichia coli TA206]
 gi|218429900|emb|CAR10727.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           ED1a]
 gi|331051661|gb|EGI23700.1| alanine racemase [Escherichia coli TA206]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 182/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    ++ P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLNEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|319897248|ref|YP_004135443.1| alanine racemase 1, plp-binding, biosynthetic [Haemophilus
           influenzae F3031]
 gi|317432752|emb|CBY81117.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus
           influenzae F3031]
          Length = 360

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 183/367 (49%), Gaps = 24/367 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L  + V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
            LR       I +L G    Q+  I   N I  I  V        L    +  P    L+
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETI--VHNREQLEALKRANLPSPIKVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFRT 184
           +DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF +
Sbjct: 126 IDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTKLQINRFLS 183

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARI 242
                +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + +
Sbjct: 184 ATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSSL 242

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R    G+ V YGG    +RD+ I V A+GY DGYP      D      V+L G+   
Sbjct: 243 IAVRHHKQGDPVGYGGIWTSSRDTKIGVVAMGYGDGYPR-----DVPEGTPVYLNGR--- 294

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
              +VPI+G+++MDM   D++     +VGD + ++G ++ ++ VA  +G  +Y+L+ ++ 
Sbjct: 295 ---LVPIVGRVSMDMLTVDLSTDSQDQVGDEVILWGKELPIETVAKFTGILSYELITKLT 351

Query: 363 TRYAKFY 369
            R    Y
Sbjct: 352 PRVITEY 358


>gi|260858163|ref|YP_003232054.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O26:H11 str. 11368]
 gi|257756812|dbj|BAI28314.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O26:H11 str. 11368]
 gi|323155607|gb|EFZ41782.1| alanine racemase [Escherichia coli EPECa14]
          Length = 365

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|229519921|ref|ZP_04409352.1| alanine racemase biosynthetic [Vibrio cholerae TM 11079-80]
 gi|229343049|gb|EEO08036.1| alanine racemase biosynthetic [Vibrio cholerae TM 11079-80]
          Length = 375

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 180/368 (48%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 22  INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIA--RHALGADAFGVARIEEALQ 79

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 80  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 136

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 137 VDSGMHRLGVRPEQYQDFVARLHQCEN--VAKPLRYMSHFGCADELDKSTTVEQTELFLS 194

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +  E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ 
Sbjct: 195 LTQGCQD-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSH 253

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T        +P+   G    
Sbjct: 254 LIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT--------APN---GTPVV 302

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 303 VNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKL 362

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 363 TSRVEMSY 370


>gi|86148219|ref|ZP_01066516.1| alanine racemase [Vibrio sp. MED222]
 gi|85833989|gb|EAQ52150.1| alanine racemase [Vibrio sp. MED222]
          Length = 358

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 187/371 (50%), Gaps = 34/371 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N + + + + + +  +VVK N YG G + IA   ++     F V  +EE ++
Sbjct: 8   IDLNALEHNLNQIKSKAPHCKVMSVVKANGYGHGLQHIAK--HSKSSDAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +  G   I+   N+  V+    QL   S L +  +  P    L+
Sbjct: 66  LRAGGIVKPILLLEGFYSSGDLPILVTNNIQTVVHCEEQL---SALENAELETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLER 181
           VD+G +RLG   ++     + +F ++L Q + +      +SH  CAD+        Q E 
Sbjct: 123 VDSGMHRLGARPEQ-----YQNFVERLHQCANVAKPLRYMSHFGCADELDRATTVEQTEL 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           F +L    +G E SLA+S+G+L  P+ H    RPGI  YG +   DK  +      V+T 
Sbjct: 178 FLSLTDGCEG-ERSLAASAGLLAWPDSHLDWVRPGIISYGVSPFADKSAQDLGFYPVMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I +R   AGE V YGG     RD+ + V AIGY DGYP T        +P+   G 
Sbjct: 237 TSHLIAVRDVKAGESVGYGGNWTSERDTKVGVIAIGYGDGYPRT--------APN---GT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             F+ G  VPI G+++MDM   D+    + +VGD   ++G D+  ++VA   GT  Y+L+
Sbjct: 286 PVFVNGRKVPIAGRVSMDMLTVDLGPDAADKVGDEATLWGKDLPSEEVAEHIGTIAYELV 345

Query: 359 VRIGTRYAKFY 369
            ++ +R A  Y
Sbjct: 346 TKLTSRVAMEY 356


>gi|157157084|ref|YP_001465553.1| alanine racemase [Escherichia coli E24377A]
 gi|157079114|gb|ABV18822.1| alanine racemase [Escherichia coli E24377A]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKSG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|120555293|ref|YP_959644.1| alanine racemase [Marinobacter aquaeolei VT8]
 gi|166969416|sp|A1U388|ALR_MARAV RecName: Full=Alanine racemase
 gi|120325142|gb|ABM19457.1| alanine racemase [Marinobacter aquaeolei VT8]
          Length = 357

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 180/365 (49%), Gaps = 21/365 (5%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL ALK+N+     L+G A   AVVK + YG G   +A AL       F V  +EE +
Sbjct: 8   RIDLDALKHNFRRARELAGTAYAMAVVKADGYGHGIRSVADALAPE-TSRFAVACIEEAI 66

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            +R    +  + +L G H   +    + +   PV+    QL++    +  G S  + ++V
Sbjct: 67  AIRGAGHRHSVVLLQGTHQKDDLAECERSGFEPVLHCQQQLSW----LGAGRSPRFWIKV 122

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLIS 187
           +TG NRLG   +E  +         L  L++  ++H ACADD  S +  +Q   F   ++
Sbjct: 123 NTGMNRLGFRPEELPEVMAGLEEAGLKHLAIGFVTHFACADDSDSEMTGLQTRIFERAVA 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIIL 244
            +  +  S+ +S+         ++ +RPGI LYG +    K+     +   +T +A +I 
Sbjct: 183 PWPDLMRSVGNSAAHFRPNQPLYEWSRPGIMLYGASPMEGKTGAELGLCPAMTLQAPLIT 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R   AGE V YG     ++D+ + + AIGYADGYP         H+ +   G    ++G
Sbjct: 243 TRVVRAGESVGYGASWTASQDTRMGMVAIGYADGYP--------RHAGT---GTPAAVRG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             + +LG+++MDM   D++       GD ++++G  + +D+VA  +GT  Y+LL  + +R
Sbjct: 292 QRIRLLGRVSMDMLAVDLSAVPEAREGDMVELWGKTVSVDEVATCAGTIGYELLTGVTSR 351

Query: 365 YAKFY 369
             + +
Sbjct: 352 VPRVH 356


>gi|301330573|ref|ZP_07223182.1| alanine racemase [Escherichia coli MS 78-1]
 gi|300843491|gb|EFK71251.1| alanine racemase [Escherichia coli MS 78-1]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 IARLTSRVAMKY 357


>gi|262045542|ref|ZP_06018563.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259037101|gb|EEW38351.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 183/367 (49%), Gaps = 25/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G    ++  +I    L   + S  QL   + L    +  P    ++
Sbjct: 66  LRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQL---AALEQADLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F    S  K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +   ++S       Q V+T  + +
Sbjct: 183 EGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGNDFGCQPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYP--------RATPS---GTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  +PI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREMPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|58257634|dbj|BAD88778.1| alanine racemase [synthetic construct]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEGQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ VA  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERVAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|331650063|ref|ZP_08351136.1| alanine racemase [Escherichia coli M605]
 gi|330908377|gb|EGH36896.1| alanine racemase, biosynthetic [Escherichia coli AA86]
 gi|331041008|gb|EGI13165.1| alanine racemase [Escherichia coli M605]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEANLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|74314547|ref|YP_312966.1| alanine racemase [Shigella sonnei Ss046]
 gi|20137404|sp|Q93HP9|ALR1_SHISO RecName: Full=Alanine racemase, biosynthetic
 gi|16610221|dbj|BAB71773.1| alanine racemase [Shigella sonnei]
 gi|73858024|gb|AAZ90731.1| alanine racemase 1 [Shigella sonnei Ss046]
 gi|323164550|gb|EFZ50351.1| alanine racemase [Shigella sonnei 53G]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSIGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|170769516|ref|ZP_02903969.1| alanine racemase [Escherichia albertii TW07627]
 gi|170121573|gb|EDS90504.1| alanine racemase [Escherichia albertii TW07627]
          Length = 359

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 183/372 (49%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEADLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P+      QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHFARADEPTCGATEKQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQSQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|16131879|ref|NP_418477.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24115357|ref|NP_709867.1| alanine racemase [Shigella flexneri 2a str. 301]
 gi|30064642|ref|NP_838813.1| alanine racemase [Shigella flexneri 2a str. 2457T]
 gi|89110774|ref|AP_004554.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K-12 substr. W3110]
 gi|91213579|ref|YP_543565.1| alanine racemase [Escherichia coli UTI89]
 gi|110807930|ref|YP_691450.1| alanine racemase [Shigella flexneri 5 str. 8401]
 gi|117626323|ref|YP_859646.1| alanine racemase [Escherichia coli APEC O1]
 gi|157163522|ref|YP_001460840.1| alanine racemase [Escherichia coli HS]
 gi|170021949|ref|YP_001726903.1| alanine racemase [Escherichia coli ATCC 8739]
 gi|170083510|ref|YP_001732830.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170680683|ref|YP_001746442.1| alanine racemase [Escherichia coli SMS-3-5]
 gi|188492399|ref|ZP_02999669.1| alanine racemase [Escherichia coli 53638]
 gi|191168796|ref|ZP_03030572.1| alanine racemase [Escherichia coli B7A]
 gi|194437323|ref|ZP_03069421.1| alanine racemase [Escherichia coli 101-1]
 gi|209921537|ref|YP_002295621.1| alanine racemase [Escherichia coli SE11]
 gi|215489388|ref|YP_002331819.1| alanine racemase [Escherichia coli O127:H6 str. E2348/69]
 gi|218561126|ref|YP_002394039.1| alanine racemase [Escherichia coli S88]
 gi|218697761|ref|YP_002405428.1| alanine racemase [Escherichia coli 55989]
 gi|218702717|ref|YP_002410346.1| alanine racemase [Escherichia coli IAI39]
 gi|237703613|ref|ZP_04534094.1| alanine racemase 1 [Escherichia sp. 3_2_53FAA]
 gi|238903162|ref|YP_002928958.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           BW2952]
 gi|253775319|ref|YP_003038150.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037050|ref|ZP_04871127.1| alanine racemase 1 [Escherichia sp. 1_1_43]
 gi|254163989|ref|YP_003047097.1| alanine racemase [Escherichia coli B str. REL606]
 gi|256024926|ref|ZP_05438791.1| alanine racemase [Escherichia sp. 4_1_40B]
 gi|260870812|ref|YP_003237214.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O111:H- str. 11128]
 gi|293476357|ref|ZP_06664765.1| alanine racemase [Escherichia coli B088]
 gi|300817971|ref|ZP_07098184.1| alanine racemase [Escherichia coli MS 107-1]
 gi|300823594|ref|ZP_07103722.1| alanine racemase [Escherichia coli MS 119-7]
 gi|300906364|ref|ZP_07124062.1| alanine racemase [Escherichia coli MS 84-1]
 gi|300917299|ref|ZP_07133972.1| alanine racemase [Escherichia coli MS 115-1]
 gi|300924316|ref|ZP_07140295.1| alanine racemase [Escherichia coli MS 182-1]
 gi|300929792|ref|ZP_07145244.1| alanine racemase [Escherichia coli MS 187-1]
 gi|300938190|ref|ZP_07152960.1| alanine racemase [Escherichia coli MS 21-1]
 gi|300946625|ref|ZP_07160884.1| alanine racemase [Escherichia coli MS 116-1]
 gi|300957537|ref|ZP_07169744.1| alanine racemase [Escherichia coli MS 175-1]
 gi|301019191|ref|ZP_07183389.1| alanine racemase [Escherichia coli MS 196-1]
 gi|301302732|ref|ZP_07208861.1| alanine racemase [Escherichia coli MS 124-1]
 gi|301645041|ref|ZP_07245004.1| alanine racemase [Escherichia coli MS 146-1]
 gi|306815836|ref|ZP_07449981.1| alanine racemase [Escherichia coli NC101]
 gi|307140743|ref|ZP_07500099.1| alanine racemase [Escherichia coli H736]
 gi|307312105|ref|ZP_07591742.1| alanine racemase [Escherichia coli W]
 gi|309795859|ref|ZP_07690273.1| alanine racemase [Escherichia coli MS 145-7]
 gi|312965646|ref|ZP_07779875.1| alanine racemase [Escherichia coli 2362-75]
 gi|312974153|ref|ZP_07788324.1| alanine racemase [Escherichia coli 1827-70]
 gi|331644794|ref|ZP_08345911.1| alanine racemase [Escherichia coli H736]
 gi|331670916|ref|ZP_08371750.1| alanine racemase [Escherichia coli TA271]
 gi|331680183|ref|ZP_08380842.1| alanine racemase [Escherichia coli H591]
 gi|331680983|ref|ZP_08381620.1| alanine racemase [Escherichia coli H299]
 gi|67462106|sp|P0A6B4|ALR1_ECOLI RecName: Full=Alanine racemase, biosynthetic
 gi|67462107|sp|P0A6B5|ALR1_SHIFL RecName: Full=Alanine racemase, biosynthetic
 gi|67462108|sp|P0A6B6|ALR1_SHIBO RecName: Full=Alanine racemase, biosynthetic
 gi|1790487|gb|AAC77023.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K-12 substr. MG1655]
 gi|16610217|dbj|BAB71771.1| alanine racemase [Shigella boydii]
 gi|24054663|gb|AAN45574.1| alanine racemase 1 [Shigella flexneri 2a str. 301]
 gi|30042901|gb|AAP18624.1| alanine racemase 1 [Shigella flexneri 2a str. 2457T]
 gi|85676805|dbj|BAE78055.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K12 substr. W3110]
 gi|91075153|gb|ABE10034.1| alanine racemase 1 [Escherichia coli UTI89]
 gi|110617478|gb|ABF06145.1| alanine racemase 1 [Shigella flexneri 5 str. 8401]
 gi|115515447|gb|ABJ03522.1| alanine racemase 1 [Escherichia coli APEC O1]
 gi|157069202|gb|ABV08457.1| alanine racemase [Escherichia coli HS]
 gi|169756877|gb|ACA79576.1| alanine racemase [Escherichia coli ATCC 8739]
 gi|169891345|gb|ACB05052.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170518401|gb|ACB16579.1| alanine racemase [Escherichia coli SMS-3-5]
 gi|188487598|gb|EDU62701.1| alanine racemase [Escherichia coli 53638]
 gi|190901174|gb|EDV60947.1| alanine racemase [Escherichia coli B7A]
 gi|194423879|gb|EDX39868.1| alanine racemase [Escherichia coli 101-1]
 gi|209914796|dbj|BAG79870.1| alanine racemase [Escherichia coli SE11]
 gi|215267460|emb|CAS11914.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218354493|emb|CAV01345.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           55989]
 gi|218367895|emb|CAR05690.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           S88]
 gi|218372703|emb|CAR20579.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           IAI39]
 gi|222035765|emb|CAP78510.1| alanine racemase, biosynthetic [Escherichia coli LF82]
 gi|226840156|gb|EEH72158.1| alanine racemase 1 [Escherichia sp. 1_1_43]
 gi|226901525|gb|EEH87784.1| alanine racemase 1 [Escherichia sp. 3_2_53FAA]
 gi|238859949|gb|ACR61947.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           BW2952]
 gi|242379581|emb|CAQ34402.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           BL21(DE3)]
 gi|253326363|gb|ACT30965.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975890|gb|ACT41561.1| alanine racemase [Escherichia coli B str. REL606]
 gi|253980046|gb|ACT45716.1| alanine racemase [Escherichia coli BL21(DE3)]
 gi|257767168|dbj|BAI38663.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O111:H- str. 11128]
 gi|260451118|gb|ACX41540.1| alanine racemase [Escherichia coli DH1]
 gi|281603462|gb|ADA76446.1| Alanine racemase, biosynthetic [Shigella flexneri 2002017]
 gi|291320810|gb|EFE60252.1| alanine racemase [Escherichia coli B088]
 gi|299882348|gb|EFI90559.1| alanine racemase [Escherichia coli MS 196-1]
 gi|300315711|gb|EFJ65495.1| alanine racemase [Escherichia coli MS 175-1]
 gi|300401812|gb|EFJ85350.1| alanine racemase [Escherichia coli MS 84-1]
 gi|300415443|gb|EFJ98753.1| alanine racemase [Escherichia coli MS 115-1]
 gi|300419481|gb|EFK02792.1| alanine racemase [Escherichia coli MS 182-1]
 gi|300453724|gb|EFK17344.1| alanine racemase [Escherichia coli MS 116-1]
 gi|300456848|gb|EFK20341.1| alanine racemase [Escherichia coli MS 21-1]
 gi|300462298|gb|EFK25791.1| alanine racemase [Escherichia coli MS 187-1]
 gi|300523926|gb|EFK44995.1| alanine racemase [Escherichia coli MS 119-7]
 gi|300529381|gb|EFK50443.1| alanine racemase [Escherichia coli MS 107-1]
 gi|300841952|gb|EFK69712.1| alanine racemase [Escherichia coli MS 124-1]
 gi|301076663|gb|EFK91469.1| alanine racemase [Escherichia coli MS 146-1]
 gi|305850811|gb|EFM51267.1| alanine racemase [Escherichia coli NC101]
 gi|306907912|gb|EFN38413.1| alanine racemase [Escherichia coli W]
 gi|307629105|gb|ADN73409.1| alanine racemase [Escherichia coli UM146]
 gi|308120520|gb|EFO57782.1| alanine racemase [Escherichia coli MS 145-7]
 gi|309704520|emb|CBJ03869.1| alanine racemase [Escherichia coli ETEC H10407]
 gi|310331687|gb|EFP98943.1| alanine racemase [Escherichia coli 1827-70]
 gi|312289620|gb|EFR17511.1| alanine racemase [Escherichia coli 2362-75]
 gi|312948630|gb|ADR29457.1| alanine racemase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648749|gb|EFS13189.1| alanine racemase [Shigella flexneri 2a str. 2457T]
 gi|315063377|gb|ADT77704.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli W]
 gi|315138607|dbj|BAJ45766.1| alanine racemase [Escherichia coli DH1]
 gi|315254725|gb|EFU34693.1| alanine racemase [Escherichia coli MS 85-1]
 gi|315297524|gb|EFU56803.1| alanine racemase [Escherichia coli MS 16-3]
 gi|315617421|gb|EFU98027.1| alanine racemase [Escherichia coli 3431]
 gi|320193412|gb|EFW68049.1| Alanine racemase, biosynthetic [Escherichia coli WV_060327]
 gi|320200816|gb|EFW75402.1| Alanine racemase, biosynthetic [Escherichia coli EC4100B]
 gi|323171196|gb|EFZ56844.1| alanine racemase [Escherichia coli LT-68]
 gi|323175939|gb|EFZ61531.1| alanine racemase [Escherichia coli 1180]
 gi|323182156|gb|EFZ67566.1| alanine racemase [Escherichia coli 1357]
 gi|323380559|gb|ADX52827.1| alanine racemase [Escherichia coli KO11]
 gi|323935542|gb|EGB31873.1| alanine racemase [Escherichia coli E1520]
 gi|323940236|gb|EGB36429.1| alanine racemase [Escherichia coli E482]
 gi|323946186|gb|EGB42220.1| alanine racemase [Escherichia coli H120]
 gi|323950400|gb|EGB46281.1| alanine racemase [Escherichia coli H252]
 gi|323954482|gb|EGB50266.1| alanine racemase [Escherichia coli H263]
 gi|323960459|gb|EGB56092.1| alanine racemase [Escherichia coli H489]
 gi|323969813|gb|EGB65094.1| alanine racemase [Escherichia coli TA007]
 gi|324007777|gb|EGB76996.1| alanine racemase [Escherichia coli MS 57-2]
 gi|324017104|gb|EGB86323.1| alanine racemase [Escherichia coli MS 117-3]
 gi|324118625|gb|EGC12517.1| alanine racemase [Escherichia coli E1167]
 gi|331035769|gb|EGI08007.1| alanine racemase [Escherichia coli H736]
 gi|331061830|gb|EGI33755.1| alanine racemase [Escherichia coli TA271]
 gi|331071646|gb|EGI42982.1| alanine racemase [Escherichia coli H591]
 gi|331081204|gb|EGI52365.1| alanine racemase [Escherichia coli H299]
 gi|332346052|gb|AEE59386.1| alanine racemase [Escherichia coli UMNK88]
 gi|332751997|gb|EGJ82390.1| alanine racemase [Shigella flexneri 4343-70]
 gi|332752167|gb|EGJ82559.1| alanine racemase [Shigella flexneri K-671]
 gi|332753294|gb|EGJ83675.1| alanine racemase [Shigella flexneri 2747-71]
 gi|332764759|gb|EGJ94988.1| alanine racemase [Shigella flexneri 2930-71]
 gi|332998121|gb|EGK17725.1| alanine racemase [Shigella flexneri VA-6]
 gi|332999051|gb|EGK18640.1| alanine racemase [Shigella flexneri K-272]
 gi|332999100|gb|EGK18687.1| alanine racemase [Shigella flexneri K-218]
 gi|333014184|gb|EGK33540.1| alanine racemase [Shigella flexneri K-304]
 gi|333014415|gb|EGK33766.1| alanine racemase [Shigella flexneri K-227]
          Length = 359

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|293417557|ref|ZP_06660179.1| alanine racemase [Escherichia coli B185]
 gi|291430275|gb|EFF03273.1| alanine racemase [Escherichia coli B185]
          Length = 359

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPRCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|269103593|ref|ZP_06156290.1| alanine racemase biosynthetic [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163491|gb|EEZ41987.1| alanine racemase biosynthetic [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 359

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 183/371 (49%), Gaps = 30/371 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL +N   +   + N++  AVVK NAYG G   +A +L    V  +    +EE + 
Sbjct: 8   IDTEALTHNLRQLRTQAPNSKILAVVKANAYGHGLLHVAKSLPT--VDAYGAARIEEALT 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + P    ++   N+  V+ S+ QL     L    +  P    L+
Sbjct: 66  LRAGGIVKPILLLEGFYSPSDLPVLVTNNIHTVVHSIEQL---EALEQAKLDGPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +DTG +RLG+  ++  +F    H   N  + +    ISH  CADD  S V + QLE F  
Sbjct: 123 IDTGMHRLGVRPEQIDEFITRLHACHN--VAKPLRYISHFGCADDLQSDVTNQQLETFLA 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQTVVTAE 239
           L     G E SLA+S+G+L  P+ H +  RPGI +YG       +    ++ ++ V+T  
Sbjct: 181 LTEGCTG-ERSLAASAGVLAWPDSHLEWIRPGIVMYGISPFAEPEMSASAYNLKPVMTLT 239

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I +R    GE V YGG     RD+ + V AIGY DGYP +        +P+   G  
Sbjct: 240 SSLIAVRDVKKGEQVGYGGNWTSERDTKVGVIAIGYGDGYPRS--------APN---GTP 288

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +VP+ G+++MDM   D+      +VGD   ++G  +  + VA   GT  Y+L+ 
Sbjct: 289 ILVNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDEAILWGNGLPAEVVAEHIGTIAYELVT 348

Query: 360 RIGTRYAKFYT 370
           ++ +R A  YT
Sbjct: 349 KLTSRVAMTYT 359


>gi|331665722|ref|ZP_08366616.1| alanine racemase [Escherichia coli TA143]
 gi|331056773|gb|EGI28767.1| alanine racemase [Escherichia coli TA143]
          Length = 359

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCDATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKLG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|163749309|ref|ZP_02156558.1| alanine racemase [Shewanella benthica KT99]
 gi|161331028|gb|EDQ01954.1| alanine racemase [Shewanella benthica KT99]
          Length = 358

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 186/377 (49%), Gaps = 38/377 (10%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I   ALK+N   +  ++ +++  AVVK N YG G   +A  + +A    F V  +
Sbjct: 4   FPRAEISCKALKHNLARLRQIAPSSKIMAVVKANGYGHGLLNVAQCIEDA--DGFGVARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY- 124
           EE + LR     A++ +L G     + I    N I  +  V   T    L    +S P  
Sbjct: 62  EEAIALRDGGVTAKLILLEGCFRPVDLITLVMNDIETV--VHNETQLEMLEQASLSKPVN 119

Query: 125 -ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---------IISHLACADDPSSHV 174
             L++DTG +RLG        FT   F +   +L           ++SH ACAD+P +  
Sbjct: 120 VWLKLDTGMHRLG--------FTPEQFEQIYARLQACPQVVKPIKLMSHFACADEPDNPY 171

Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHP 231
              QL +F  L+ +  G + +LA+S+G L  P+ H    RPGI+LYG    T  + K+H 
Sbjct: 172 TQEQLNKFNKLVRNLPG-DTTLANSAGTLYWPDSHKDWVRPGIALYGVSPVTGDLGKNHG 230

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +Q  +   +++I +R+  AGE V YG   +   D+ + + AIGY DGYP         ++
Sbjct: 231 LQPAMELISQLIAVREHKAGEPVGYGCYWRAKADTKLGIVAIGYGDGYP--------RNA 282

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
           P    G   ++ G +VPI+G+++MDM   D+    S  +GD   ++G  + ++ VA   G
Sbjct: 283 PE---GTPVWVNGRLVPIVGRVSMDMLTVDLGSDSSDSIGDEAILWGSALPVEVVAEHIG 339

Query: 352 TTNYDLLVRIGTRYAKF 368
           T  Y+L+ ++  R A +
Sbjct: 340 TIAYELVTKLTPRVAVY 356


>gi|193885277|pdb|3B8U|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221a
 gi|193885278|pdb|3B8U|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221a
 gi|193885279|pdb|3B8U|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221a
 gi|193885280|pdb|3B8U|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221a
          Length = 379

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 28  INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 85

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 86  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 137

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + +DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 138 TVWMXLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 197

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 198 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLADRSTGADFGCQPVMS 256

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 257 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 305

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 306 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 365

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 366 ITRLTSRVAMKY 377


>gi|315287851|gb|EFU47253.1| alanine racemase [Escherichia coli MS 110-3]
          Length = 359

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INHRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|161505290|ref|YP_001572402.1| alanine racemase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866637|gb|ABX23260.1| hypothetical protein SARI_03431 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 359

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +P IS+      V      + L +  ++ P 
Sbjct: 66  LREGGITQPILLLEGF--------FDAADLPTISAQRLHTAVHNQEQLTALEAVELAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P       QLE 
Sbjct: 118 TVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLEI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVT 237
           F        G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++
Sbjct: 178 FNAFCQDKAG-KRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I  R   AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAARDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+  +   + GD + ++G D+ ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPNAQDKAGDPVVLWGEDLPVERIAEITKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMEY 357


>gi|323965715|gb|EGB61167.1| alanine racemase [Escherichia coli M863]
 gi|327250397|gb|EGE62110.1| alanine racemase [Escherichia coli STEC_7v]
          Length = 359

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 182/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTRCKNVRQPVNIVSHFARADEPKCGATEKQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     R++ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERNTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|84393171|ref|ZP_00991935.1| alanine racemase [Vibrio splendidus 12B01]
 gi|84376223|gb|EAP93107.1| alanine racemase [Vibrio splendidus 12B01]
          Length = 358

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 185/371 (49%), Gaps = 34/371 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N + + + +   +  +VVK N YG G   IA    N+    F V  +EE ++
Sbjct: 8   IDLNALEHNLNQIKSKAPQCKVMSVVKANGYGHGLLHIAKHSKNSDA--FGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +  G   I+   N+  V+    QL   S L +  +  P    L+
Sbjct: 66  LRAGGIVKPILLLEGFYSSGDLPILVTNNIQTVVHCEEQL---SALENADLETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLER 181
           VD+G +RLG+  ++     + +F ++L Q + +      +SH  CAD+        Q E 
Sbjct: 123 VDSGMHRLGVRPEQ-----YQNFVERLHQCANVAKPLRYMSHFGCADELDRATTVEQTEL 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           F +L    +G E SLA+S+G+L  PN H    RPGI  YG +   DK  +    + V+T 
Sbjct: 178 FLSLTDGCEG-ERSLAASAGLLAWPNSHLDWVRPGIISYGVSPFADKSAQELGFKPVMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I +R   AGE V YG      RD+ + V AIGY DGYP          +P+   G 
Sbjct: 237 TSHLIAVRDVKAGESVGYGANWTSERDTKVGVIAIGYGDGYP--------RMAPN---GT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             F+ G  VPI G+++MDM   D+    + +VGD   ++G D+  ++VA   GT  Y+L+
Sbjct: 286 PVFVNGRKVPIAGRVSMDMLTVDLGPDAADKVGDEATLWGKDLPSEEVAEHIGTIAYELV 345

Query: 359 VRIGTRYAKFY 369
            ++ +R A  Y
Sbjct: 346 TKLTSRVAMEY 356


>gi|82546378|ref|YP_410325.1| alanine racemase [Shigella boydii Sb227]
 gi|187732519|ref|YP_001882723.1| alanine racemase [Shigella boydii CDC 3083-94]
 gi|20137402|sp|Q932V0|ALR1_SHIDY RecName: Full=Alanine racemase, biosynthetic
 gi|123558063|sp|Q31TW1|ALR_SHIBS RecName: Full=Alanine racemase
 gi|226711059|sp|B2TX62|ALR_SHIB3 RecName: Full=Alanine racemase
 gi|16610215|dbj|BAB71770.1| alanine racemase [Shigella dysenteriae]
 gi|16610219|dbj|BAB71772.1| alanine racemase [Shigella flexneri]
 gi|81247789|gb|ABB68497.1| alanine racemase 1 [Shigella boydii Sb227]
 gi|187429511|gb|ACD08785.1| alanine racemase [Shigella boydii CDC 3083-94]
 gi|320174482|gb|EFW49622.1| Alanine racemase, biosynthetic [Shigella dysenteriae CDC 74-1112]
 gi|320185265|gb|EFW60041.1| Alanine racemase, biosynthetic [Shigella flexneri CDC 796-83]
 gi|332087804|gb|EGI92930.1| alanine racemase [Shigella boydii 3594-74]
          Length = 359

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|323975315|gb|EGB70418.1| alanine racemase [Escherichia coli TW10509]
          Length = 359

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 182/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     R++ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERNTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|205354317|ref|YP_002228118.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274098|emb|CAR39107.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326629441|gb|EGE35784.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 358

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 174/362 (48%), Gaps = 25/362 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V LR + +  A + +L G+ P    +     + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRKILSADAMVVLLNGVMPQAMPLCCAQQITPLLNSVDQVMAWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RL    ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLAAIFRQ----------RGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 183

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+ G  +   S P++   T    I+ ++
Sbjct: 184 EAFPTSRYSLANSCGMFLHPAWREDLCRPGVALF-GVAQPWFSTPLKPAFTLTLSILRVQ 242

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L        P+    G  + +G  
Sbjct: 243 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL------RPPA----GVCW-RGVR 291

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D   ++    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 292 LPVLGRVCMDSFMVD-ARAIMPTPGDVVEFIGVSQTLEEVAAACDTIPYEIMTRLGGRFR 350

Query: 367 KF 368
           + 
Sbjct: 351 RI 352


>gi|294493177|gb|ADE91933.1| alanine racemase [Escherichia coli IHE3034]
          Length = 359

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L       P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASPDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|193885285|pdb|3B8W|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221p
 gi|193885286|pdb|3B8W|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221p
 gi|193885287|pdb|3B8W|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221p
 gi|193885288|pdb|3B8W|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221p
          Length = 379

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 28  INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 85

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 86  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 137

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + +DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 138 TVWMXLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 197

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 198 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLPDRSTGADFGCQPVMS 256

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 257 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 305

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 306 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 365

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 366 ITRLTSRVAMKY 377


>gi|301156142|emb|CBW15613.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus
           parainfluenzae T3T1]
          Length = 360

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 188/369 (50%), Gaps = 26/369 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK+N   +   + +++  AVVK NAYG G   ++ AL  + V  F V  +EE +
Sbjct: 9   KISSLALKHNLQVIKEKAPHSKIIAVVKANAYGHGVVFVSSAL-ESMVDCFAVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    ++  II   N+  V+ +  QL     L    V  P    L
Sbjct: 68  SLRSNGIIKPILLLEGFFDEKDLPIIAVNNIETVVHNREQL---EALKRAVVPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG+SL E +D+ +    KKL Q+      +SH + AD+  S    VQL+RF 
Sbjct: 125 KIDTGMHRLGVSLDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELDSDYTQVQLDRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
               + +G E ++A+S GIL  P  H    RPGI +YG   TD +     +  V+   + 
Sbjct: 183 QATKNKEG-ERTIAASGGILFWPEAHLDCIRPGIIMYGISPTDTVGAEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ +R+   GE V YGG     +D+ I V AIGY DGYP      D      V+L G+  
Sbjct: 242 LLAVREHKKGEPVGYGGIWTSPKDTKIGVVAIGYGDGYPR-----DVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+ +    +VGD + ++G ++ ++ VA  SG  +Y+L+ ++
Sbjct: 295 ----IVPIVGRVSMDMLTVDLGEDSQDKVGDEVILWGKELPIETVAKYSGILSYELITKL 350

Query: 362 GTRYAKFYT 370
             R    Y 
Sbjct: 351 TPRVITEYV 359


>gi|269137597|ref|YP_003294297.1| alanine racemase [Edwardsiella tarda EIB202]
 gi|267983257|gb|ACY83086.1| alanine racemase [Edwardsiella tarda EIB202]
 gi|304557668|gb|ADM40332.1| alanine racemase [Edwardsiella tarda FL6-60]
          Length = 363

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 184/368 (50%), Gaps = 26/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N+  +   + ++R  AVVK NAYG G  + A  L+ A    + V  + E + 
Sbjct: 8   IDRRALRHNFQQIRKFAPHSRLIAVVKANAYGHGLLETAKILHQADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  ++   N+   + S  QL     L +  +  P    ++
Sbjct: 66  LRSGGIVKPILLLEGFFSASDLPVLVANNIETAVHSEEQL---QALENARLERPIKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F         + Q    +SH + AD+P       QL  F   +
Sbjct: 123 LDTGMHRLGVRPEQAEAFYRRLCTCPNVAQPVNFMSHFSRADEPECGRTEQQLACFDDFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAEAR 241
               G E S+A+S GILL P  H  + RPGI +YG + + + S     + +Q  +T ++ 
Sbjct: 183 QGKAG-EQSIAASGGILLWPQSHRDMVRPGIIMYGVSPQADLSLAADHYGLQPAMTLQSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G    
Sbjct: 242 LIAVREHKAGEPVGYGGAWVAQRDTRLGVVAIGYGDGYPRS--------APS---GTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+    +  VGD + ++GP + ++ VA  +G + Y+L+ ++
Sbjct: 291 INGREVPIVGRVSMDMISVDLGPQAADRVGDNVIMWGPGLPVEKVAACTGISAYELITKL 350

Query: 362 GTRYAKFY 369
            +R A  Y
Sbjct: 351 TSRVAMEY 358


>gi|193885281|pdb|3B8V|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221k
 gi|193885282|pdb|3B8V|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221k
 gi|193885283|pdb|3B8V|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221k
 gi|193885284|pdb|3B8V|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221k
          Length = 379

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 28  INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 85

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 86  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 137

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + +DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 138 TVWMXLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 197

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 198 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLKDRSTGADFGCQPVMS 256

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 257 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 305

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 306 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 365

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 366 ITRLTSRVAMKY 377


>gi|58257636|dbj|BAD88779.1| alanine racemase [synthetic construct]
          Length = 359

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEGQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|331655873|ref|ZP_08356861.1| alanine racemase [Escherichia coli M718]
 gi|331046227|gb|EGI18317.1| alanine racemase [Escherichia coli M718]
          Length = 359

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGSTEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|193885202|pdb|2RJG|A Chain A, Crystal Structure Of Biosynthetic Alaine Racemase From
           Escherichia Coli
 gi|193885203|pdb|2RJG|B Chain B, Crystal Structure Of Biosynthetic Alaine Racemase From
           Escherichia Coli
 gi|193885204|pdb|2RJG|C Chain C, Crystal Structure Of Biosynthetic Alaine Racemase From
           Escherichia Coli
 gi|193885205|pdb|2RJG|D Chain D, Crystal Structure Of Biosynthetic Alaine Racemase From
           Escherichia Coli
 gi|193885206|pdb|2RJH|A Chain A, Crystal Structure Of Biosynthetic Alaine Racemase In D-
           Cycloserine-Bound Form From Escherichia Coli
 gi|193885207|pdb|2RJH|B Chain B, Crystal Structure Of Biosynthetic Alaine Racemase In D-
           Cycloserine-Bound Form From Escherichia Coli
 gi|193885208|pdb|2RJH|C Chain C, Crystal Structure Of Biosynthetic Alaine Racemase In D-
           Cycloserine-Bound Form From Escherichia Coli
 gi|193885209|pdb|2RJH|D Chain D, Crystal Structure Of Biosynthetic Alaine Racemase In D-
           Cycloserine-Bound Form From Escherichia Coli
          Length = 379

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 28  INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 85

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 86  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 137

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + +DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 138 TVWMXLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 197

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 198 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 256

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 257 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 305

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 306 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 365

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 366 ITRLTSRVAMKY 377


>gi|330445019|ref|ZP_08308673.1| alanine racemase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493137|dbj|GAA03170.1| alanine racemase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 359

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 185/367 (50%), Gaps = 22/367 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL +N   +   + N++  AVVK NAYG G  ++A +L N  V  + V  +EE + 
Sbjct: 8   IDTDALAHNLGLIRQQAPNSKILAVVKANAYGHGLLRVAQSLTN--VDAYGVARIEEALM 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G + P    ++   N+  V+ S+ QL    +           +++D
Sbjct: 66  LRAGGVVKPILLLEGFYAPSDLPVLVTNNIHTVVHSIEQLEALEQ-AELDSQVKVWVKID 124

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++  DF    +  + + +    ISH   ADD SS +   QL+ F  L   
Sbjct: 125 TGMHRLGVRPEDLTDFMARLNACENVAKPLRFISHFGNADDLSSDITLQQLDTFLNLTQD 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT-----DKINKSHPMQTVVTAEARII 243
           Y+G E SLA+S+G+L  P+   +  RPGI +YG +     ++   ++ ++ V+T  + II
Sbjct: 185 YQG-ERSLAASAGVLAWPDSQLEWIRPGIIMYGVSPFNEPERYASAYDLKPVMTLTSSII 243

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R    GE V YGG     RD+ + V AIGY DGYP +        +P+   G    + 
Sbjct: 244 AVRDVKKGEKVGYGGIWTSERDTKMGVIAIGYGDGYPRS--------APN---GTPVLVN 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G +VP+ G+++MDM   D+      +VGD   ++G  +  + VA   GT  Y+L+ ++  
Sbjct: 293 GRIVPMAGRVSMDMLTVDLGPDAQDKVGDTAILWGEGLPAEIVAEHIGTIAYELITKLTP 352

Query: 364 RYAKFYT 370
           R A  YT
Sbjct: 353 RVAMAYT 359


>gi|194432311|ref|ZP_03064599.1| alanine racemase [Shigella dysenteriae 1012]
 gi|194419514|gb|EDX35595.1| alanine racemase [Shigella dysenteriae 1012]
 gi|320179049|gb|EFW54008.1| Alanine racemase, biosynthetic [Shigella boydii ATCC 9905]
 gi|332084266|gb|EGI89469.1| alanine racemase [Shigella dysenteriae 155-74]
          Length = 359

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEKAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+        GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDNAGDSVILWGEGLPVERIAEITKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|193063073|ref|ZP_03044165.1| alanine racemase [Escherichia coli E22]
 gi|194426899|ref|ZP_03059452.1| alanine racemase [Escherichia coli B171]
 gi|260846847|ref|YP_003224625.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O103:H2 str. 12009]
 gi|192931332|gb|EDV83934.1| alanine racemase [Escherichia coli E22]
 gi|194415235|gb|EDX31504.1| alanine racemase [Escherichia coli B171]
 gi|195183272|dbj|BAG66813.1| alanine racemase 1 [Escherichia coli O111:H-]
 gi|257761994|dbj|BAI33491.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O103:H2 str. 12009]
 gi|323162193|gb|EFZ48056.1| alanine racemase [Escherichia coli E128010]
          Length = 359

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGIIKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|156972397|ref|YP_001443304.1| alanine racemase [Vibrio harveyi ATCC BAA-1116]
 gi|156523991|gb|ABU69077.1| hypothetical protein VIBHAR_00017 [Vibrio harveyi ATCC BAA-1116]
          Length = 366

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 192/382 (50%), Gaps = 29/382 (7%)

Query: 1   MHSNEFLRLK-----IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           M SN    +K     IDL+AL++N   +   + +++  AVVK N YG G   +A    +A
Sbjct: 1   MMSNAMSYMKAAMACIDLSALQHNLQRVKQQAPDSKVMAVVKANGYGHGLRHVAKHATHA 60

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
               F V  +EE ++LR       I +L G + PG   ++   N+  V+    QL     
Sbjct: 61  DA--FGVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLV---A 115

Query: 115 LMSCGVSHPYA--LQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPS 171
           L    +  P    L++D+G +RLG+  ++  +F T       + +    +SH  CAD+  
Sbjct: 116 LEQAELETPVVVWLKIDSGMHRLGVRPEQYDEFITRLKECPNVAKPLRYMSHFGCADELD 175

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINK 228
           + + + Q++ F +L +  +G E SLA+S+G+L  P       RPGI +YG +   DK  +
Sbjct: 176 NSITTEQIDLFMSLTAGCQG-ERSLAASAGLLAWPQSQLDWVRPGIIMYGVSPFNDKTAQ 234

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               + V+T ++ +I +R+   GE V YGG     RD+ + V A+GY DGYP T      
Sbjct: 235 DMGYKPVMTLKSHLIAVREVKKGESVGYGGMWTSERDTKVGVIAVGYGDGYPRT------ 288

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
             +P+   G    + G  VPI G+++MDM   D+    + +V D   ++G D+ +++VA 
Sbjct: 289 --APN---GTPVLVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKDLPVEEVAS 343

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
             GT  Y+L+ ++ +R    Y+
Sbjct: 344 HIGTIAYELVTKLTSRVEMEYS 365


>gi|123444026|ref|YP_001007996.1| alanine racemase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122090987|emb|CAL13870.1| alanine racemase (biosynthetic) [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 359

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 188/364 (51%), Gaps = 20/364 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRIAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G    ++  I   N I   + S+ QL            H + +++D
Sbjct: 66  LRSGGIVKPILLLEGFFAAEDLPILAANCIETAVHSIEQLEALEVAELSAPIHVW-MKLD 124

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++A  F    S  K + Q   I+SH + AD+P       QL+ F T ++ 
Sbjct: 125 TGMHRLGVRPEQAEAFYQRLSACKNVIQPVNIMSHFSRADEPQVDTTRQQLDCFDTFVAD 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARIILI 245
             G + S+A+S GILL P  H    RPGI LYG +  D+   SH  ++  +  ++ +I +
Sbjct: 185 KPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFELKPAMALKSSLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G   ++ G 
Sbjct: 244 REHKAGEPVGYGGTWVSERDTRLGVVAIGYGDGYPRS--------APS---GTPMWLNGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            V I+G+++MDM   D+  + + +VGD + ++G ++ ++ +A  +G + Y+L+ ++ +R 
Sbjct: 293 EVGIVGRVSMDMISVDLGPNATDKVGDEVLLWGAELPVEKIAACTGISAYELITKLTSRV 352

Query: 366 AKFY 369
           A  Y
Sbjct: 353 AMEY 356


>gi|283836658|ref|ZP_06356399.1| alanine racemase [Citrobacter youngae ATCC 29220]
 gi|291067398|gb|EFE05507.1| alanine racemase [Citrobacter youngae ATCC 29220]
          Length = 359

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 182/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V  L     L +  ++ P 
Sbjct: 66  LRAGGITQPVLLLEGF--------FDATDLPTISAQRLHTAVHNLEQLEALEAAKLAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F    +  + + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYQRLTQCENVRQPVNIVSHFARADEPECGATEKQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F        G + S+A+S GILL P  HF   RPG+ LYG +   N S       Q V++
Sbjct: 178 FNRFCEGKPG-QRSIAASGGILLWPQSHFDWARPGLILYGVSPLENHSIGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG  +  RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWQSERDTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPEAQDKAGDSVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|193885273|pdb|3B8T|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant P219a
 gi|193885274|pdb|3B8T|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant P219a
 gi|193885275|pdb|3B8T|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant P219a
 gi|193885276|pdb|3B8T|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant P219a
          Length = 379

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 28  INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 85

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 86  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 137

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + +DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 138 TVWMXLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 197

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 198 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSALEDRSTGADFGCQPVMS 256

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 257 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 305

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 306 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 365

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 366 ITRLTSRVAMKY 377


>gi|331675585|ref|ZP_08376332.1| alanine racemase [Escherichia coli TA280]
 gi|331067193|gb|EGI38601.1| alanine racemase [Escherichia coli TA280]
          Length = 359

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 181/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  + + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCQNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|323496058|ref|ZP_08101118.1| alanine racemase [Vibrio sinaloensis DSM 21326]
 gi|323318802|gb|EGA71753.1| alanine racemase [Vibrio sinaloensis DSM 21326]
          Length = 359

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 185/372 (49%), Gaps = 36/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + N++  AVVK N+YG G   IA  ++  G   F V  +EE ++
Sbjct: 8   INLDALEHNLEQIKRQAPNSKVMAVVKANSYGHGLRHIA--VHAHGADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL   + L    +  P    L+
Sbjct: 66  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---AALEQAELETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLER 181
           VD+G +RLG+  ++     +N+F  +L     +      +SH  CAD+ +    + Q E 
Sbjct: 123 VDSGMHRLGVRPEQ-----YNAFVSRLKACRNVAKPLRYMSHFGCADELNKPTTNEQTEL 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVT 237
           F +L    +G E SLA+S+G+L  P       RPGI +YG     N    +Q     V+T
Sbjct: 178 FLSLTQGCEG-ERSLAASAGLLAWPESQLDWVRPGIIMYG-VSPFNDKTALQMGYLPVMT 235

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++ +I +R   AGE V YGG     +D+ I V AIGY DGYP T        +P+   G
Sbjct: 236 LKSHLIAVRDVKAGESVGYGGTWTCEQDTKIGVIAIGYGDGYPRT--------APN---G 284

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              ++ G   PI G+++MDM   D+    +  VGD   ++G D+ +++VA   GT  Y+L
Sbjct: 285 TPVWVNGRKAPIAGRVSMDMLTVDLGPGATDRVGDEAILWGNDLPVEEVAGHIGTIAYEL 344

Query: 358 LVRIGTRYAKFY 369
           + ++ +R    Y
Sbjct: 345 VTKLTSRVEMEY 356


>gi|309787539|ref|ZP_07682151.1| alanine racemase [Shigella dysenteriae 1617]
 gi|308925117|gb|EFP70612.1| alanine racemase [Shigella dysenteriae 1617]
          Length = 353

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 2   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 59

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 60  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 111

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 112 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 171

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 172 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 230

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+   GE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 231 LTSSLIAVREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRA--------APS---G 279

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 280 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 339

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 340 IARLTSRVAMKY 351


>gi|283787218|ref|YP_003367083.1| alanine racemase [Citrobacter rodentium ICC168]
 gi|282950672|emb|CBG90346.1| alanine racemase [Citrobacter rodentium ICC168]
          Length = 359

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 183/372 (49%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRQLAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         F+ + +P IS+      V      + L S  +  P 
Sbjct: 66  LRAGGITQPVLLLEGF--------FEASDLPTISAQHLHTAVHNEEQLAALESASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F    +  K + Q   IISH A AD+P S     QL  
Sbjct: 118 TVWMKLDTGMHRLGVLPEQAEAFYQRLTKCKNVRQPVNIISHFARADEPESGATEKQLNI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL    HF   RPGI LYG +   N+S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWSQSHFNWARPGIILYGVSPLENRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG  +  RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWQSERDTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPEAQDKAGDPVILWGEGLPVERIAEITKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|218708338|ref|YP_002415959.1| alanine racemase [Vibrio splendidus LGP32]
 gi|254802395|sp|B7VI70|ALR_VIBSL RecName: Full=Alanine racemase
 gi|218321357|emb|CAV17307.1| Alanine racemase 1 [Vibrio splendidus LGP32]
          Length = 358

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 186/371 (50%), Gaps = 34/371 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N + + + + + +  +VVK N YG G   IA   ++     F V  +EE ++
Sbjct: 8   IDLNALEHNLNQIKSKAPHCKVMSVVKANGYGHGLLHIAK--HSKSSDAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +  G   I+   N+  V+    QL   S L +  +  P    L+
Sbjct: 66  LRAGGIVKPILLLEGFYSSGDLPILVTNNIQTVVHCEEQL---SALENAELETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLER 181
           VD+G +RLG   ++     + +F ++L Q + +      +SH  CAD+        Q E 
Sbjct: 123 VDSGMHRLGARPEQ-----YQNFVERLHQCANVAKPLRYMSHFGCADELDRATTVEQTEL 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           F +L    +G E SLA+S+G+L  P+ H    RPGI  YG +   DK  +      V+T 
Sbjct: 178 FLSLTDGCEG-ERSLAASAGLLAWPDSHLDWVRPGIISYGVSPFADKSAQDLGFYPVMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I +R   AGE V YGG     RD+ + V AIGY DGYP T        +P+   G 
Sbjct: 237 TSHLIAVRDVKAGESVGYGGNWTSERDTKVGVIAIGYGDGYPRT--------APN---GT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             F+ G  VPI G+++MDM   D+    + +VGD   ++G D+  ++VA   GT  Y+L+
Sbjct: 286 PVFVNGRKVPIAGRVSMDMLTVDLGPDAADKVGDEATLWGKDLPSEEVAEHIGTIAYELV 345

Query: 359 VRIGTRYAKFY 369
            ++ +R A  Y
Sbjct: 346 TKLTSRVAMEY 356


>gi|24375404|ref|NP_719447.1| alanine racemase [Shewanella oneidensis MR-1]
 gi|81845755|sp|Q8EAI6|ALR_SHEON RecName: Full=Alanine racemase
 gi|24350242|gb|AAN56891.1|AE015824_2 alanine racemase, biosynthetic [Shewanella oneidensis MR-1]
          Length = 358

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 191/368 (51%), Gaps = 24/368 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I  +AL+NN   +   + +++  AVVK N YG G   +A  L NA    F +  +
Sbjct: 4   FPRAEISSSALQNNLAVLRQQASSSQVMAVVKANGYGHGLLNVAKCLNNA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE ++LR  + +AR+ +L G     +  ++ + ++  V+    Q+     L    +S P 
Sbjct: 62  EEALELRAGSVKARLLLLEGFFRSTDLPLLVEHDIDTVVHHESQIEM---LEQATLSKPV 118

Query: 125 A--LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG++ ++ +  +   +  K + +   +++H ACAD+P +H   VQ++ 
Sbjct: 119 TVWLKVDSGMHRLGVTPEQFSAVYARLTACKNVAKPIHLMTHFACADEPDNHYTQVQMQT 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTA 238
           F  L +   G   +LA+S+G L  P       RPGI++YG    T     +H +   +  
Sbjct: 179 FNQLTADLPGFR-TLANSAGALYWPKSQGDWIRPGIAMYGVSPVTGDCGANHGLIPAMNL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +R+I +R+  A + V YG      +D+ + V AIGY DGYP         ++P    G 
Sbjct: 238 VSRLIAVREHKANQPVGYGCYWTAKQDTRLGVVAIGYGDGYP--------RNAPE---GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             +I G  VPI+G+++MDM   D+    + +VGD + ++G  + +++VA   GT  Y+L+
Sbjct: 287 PVWINGRRVPIVGRVSMDMLTVDLGHDATDQVGDDVLLWGQALPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|15804645|ref|NP_290686.1| alanine racemase [Escherichia coli O157:H7 EDL933]
 gi|15834289|ref|NP_313062.1| alanine racemase [Escherichia coli O157:H7 str. Sakai]
 gi|168748102|ref|ZP_02773124.1| alanine racemase [Escherichia coli O157:H7 str. EC4113]
 gi|168755220|ref|ZP_02780227.1| alanine racemase [Escherichia coli O157:H7 str. EC4401]
 gi|168760899|ref|ZP_02785906.1| alanine racemase [Escherichia coli O157:H7 str. EC4501]
 gi|168766310|ref|ZP_02791317.1| alanine racemase [Escherichia coli O157:H7 str. EC4486]
 gi|168774408|ref|ZP_02799415.1| alanine racemase [Escherichia coli O157:H7 str. EC4196]
 gi|168780463|ref|ZP_02805470.1| alanine racemase [Escherichia coli O157:H7 str. EC4076]
 gi|168784666|ref|ZP_02809673.1| alanine racemase [Escherichia coli O157:H7 str. EC869]
 gi|168798287|ref|ZP_02823294.1| alanine racemase [Escherichia coli O157:H7 str. EC508]
 gi|195935836|ref|ZP_03081218.1| alanine racemase [Escherichia coli O157:H7 str. EC4024]
 gi|208806109|ref|ZP_03248446.1| alanine racemase [Escherichia coli O157:H7 str. EC4206]
 gi|208812590|ref|ZP_03253919.1| alanine racemase [Escherichia coli O157:H7 str. EC4045]
 gi|208819299|ref|ZP_03259619.1| alanine racemase [Escherichia coli O157:H7 str. EC4042]
 gi|209397944|ref|YP_002273593.1| alanine racemase [Escherichia coli O157:H7 str. EC4115]
 gi|217325461|ref|ZP_03441545.1| alanine racemase [Escherichia coli O157:H7 str. TW14588]
 gi|254796072|ref|YP_003080909.1| alanine racemase [Escherichia coli O157:H7 str. TW14359]
 gi|261225171|ref|ZP_05939452.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255577|ref|ZP_05948110.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291285469|ref|YP_003502287.1| Alanine racemase, biosynthetic [Escherichia coli O55:H7 str.
           CB9615]
 gi|20137342|sp|Q8X5V2|ALR1_ECO57 RecName: Full=Alanine racemase, biosynthetic
 gi|12519004|gb|AAG59251.1|AE005638_5 alanine racemase 1 [Escherichia coli O157:H7 str. EDL933]
 gi|13364512|dbj|BAB38458.1| alanine racemase 1 [Escherichia coli O157:H7 str. Sakai]
 gi|187769867|gb|EDU33711.1| alanine racemase [Escherichia coli O157:H7 str. EC4196]
 gi|188017506|gb|EDU55628.1| alanine racemase [Escherichia coli O157:H7 str. EC4113]
 gi|189001846|gb|EDU70832.1| alanine racemase [Escherichia coli O157:H7 str. EC4076]
 gi|189357442|gb|EDU75861.1| alanine racemase [Escherichia coli O157:H7 str. EC4401]
 gi|189364060|gb|EDU82479.1| alanine racemase [Escherichia coli O157:H7 str. EC4486]
 gi|189368602|gb|EDU87018.1| alanine racemase [Escherichia coli O157:H7 str. EC4501]
 gi|189374890|gb|EDU93306.1| alanine racemase [Escherichia coli O157:H7 str. EC869]
 gi|189379189|gb|EDU97605.1| alanine racemase [Escherichia coli O157:H7 str. EC508]
 gi|208725910|gb|EDZ75511.1| alanine racemase [Escherichia coli O157:H7 str. EC4206]
 gi|208733867|gb|EDZ82554.1| alanine racemase [Escherichia coli O157:H7 str. EC4045]
 gi|208739422|gb|EDZ87104.1| alanine racemase [Escherichia coli O157:H7 str. EC4042]
 gi|209159344|gb|ACI36777.1| alanine racemase [Escherichia coli O157:H7 str. EC4115]
 gi|209751260|gb|ACI73937.1| alanine racemase 1 [Escherichia coli]
 gi|209751262|gb|ACI73938.1| alanine racemase 1 [Escherichia coli]
 gi|209751264|gb|ACI73939.1| alanine racemase 1 [Escherichia coli]
 gi|209751266|gb|ACI73940.1| alanine racemase 1 [Escherichia coli]
 gi|217321682|gb|EEC30106.1| alanine racemase [Escherichia coli O157:H7 str. TW14588]
 gi|254595472|gb|ACT74833.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O157:H7 str. TW14359]
 gi|290765342|gb|ADD59303.1| Alanine racemase, biosynthetic [Escherichia coli O55:H7 str.
           CB9615]
 gi|320190822|gb|EFW65472.1| Alanine racemase, biosynthetic [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638809|gb|EFX08455.1| alanine racemase [Escherichia coli O157:H7 str. G5101]
 gi|320654892|gb|EFX22853.1| alanine racemase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660740|gb|EFX28197.1| alanine racemase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665669|gb|EFX32706.1| alanine racemase [Escherichia coli O157:H7 str. LSU-61]
 gi|326341902|gb|EGD65685.1| Alanine racemase, biosynthetic [Escherichia coli O157:H7 str. 1125]
 gi|326346524|gb|EGD70258.1| Alanine racemase, biosynthetic [Escherichia coli O157:H7 str. 1044]
          Length = 359

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+   GE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|237728136|ref|ZP_04558617.1| alanine racemase 1 [Citrobacter sp. 30_2]
 gi|226910147|gb|EEH96065.1| alanine racemase 1 [Citrobacter sp. 30_2]
          Length = 359

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 183/372 (49%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD + +P IS+      V        L +  ++ P 
Sbjct: 66  LRAGGITQPILLLEGF--------FDASDLPTISAQRLHTAVHNQEQLEALEAAKLAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F    +  + + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYQRLTQCENVRQPVNIVSHFARADEPECGATEKQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F +      G + S+A+S GILL P  HF   RPG+ LYG +   N S       Q V++
Sbjct: 178 FNSFCEGKPG-QRSIAASGGILLWPQSHFDWARPGLILYGVSPLENHSIGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG  +  RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWQSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPEAQDKAGDSVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|82779537|ref|YP_405886.1| alanine racemase [Shigella dysenteriae Sd197]
 gi|123560897|sp|Q327W0|ALR_SHIDS RecName: Full=Alanine racemase
 gi|81243685|gb|ABB64395.1| alanine racemase 1 [Shigella dysenteriae Sd197]
          Length = 359

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+   GE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 IARLTSRVAMKY 357


>gi|157148050|ref|YP_001455368.1| alanine racemase [Citrobacter koseri ATCC BAA-895]
 gi|157085255|gb|ABV14933.1| hypothetical protein CKO_03857 [Citrobacter koseri ATCC BAA-895]
          Length = 359

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 183/372 (49%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         F+   +PVIS+      V      + L + G+  P 
Sbjct: 66  LRAGGITQPILLLEGF--------FEATDLPVISAQHLHTAVHNEEQLAALEAAGLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F    +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEKAEAFYQRLTQCKNVRQPVNIVSHFARADEPECGATEQQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   N+S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLENQSTGEDFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LISSLIAVREHKAGEPVGYGGTWISERDTCLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  V I+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVTIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|332140005|ref|YP_004425743.1| alanine racemase [Alteromonas macleodii str. 'Deep ecotype']
 gi|254802359|sp|B4S1A6|ALR_ALTMD RecName: Full=Alanine racemase
 gi|327550027|gb|AEA96745.1| alanine racemase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 358

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 184/361 (50%), Gaps = 18/361 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL +N+ ++ A++ ++++ AVVK +AYG G   +A  L +   Q F V  +EE + 
Sbjct: 9   IHADALLHNFKALAAIAPSSQSMAVVKADAYGHGAVNVARILQHVSSQ-FAVAIIEEAIA 67

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR     A + VL G H  +E ++ F  N I V+    QL + +        H + L+VD
Sbjct: 68  LRDAGISAPVVVLEGAHQAKECQMAFQHNCILVMHCEEQLQWLNNCPENQRPHIW-LKVD 126

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G +RLG ++ +  D T   +   L + ++I +H ACADD  +   + QL  F+  ++  
Sbjct: 127 SGMHRLGFAISDIEDMT-KKYRHLLSEQTVIATHFACADDVDNGFTASQLSAFKR-VADA 184

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTVVTAEARIILIRK 247
            G+  S+A+S   +  P       R G+ +YGG  +   N    +   +T  + I+ +R 
Sbjct: 185 IGLPTSVANSPATVNWPASRNAWNRLGVGVYGGAVSTANNVGVEIYPAMTLRSSILAVRT 244

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AGE V YG +   ++ S IA   IGYADGYP          +P +  G + F+ G   
Sbjct: 245 IAAGEGVGYGQRWVASKPSKIATVGIGYADGYPRHCK----NKTPVMVRGKRAFLAG--- 297

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
               +++MDM   D+T   ++ VGD ++++G ++ + +VA  + T +Y+L+ R+  R  +
Sbjct: 298 ----RVSMDMITIDVTHIDNVSVGDEVELWGQNVPIQEVAACADTIDYELMTRVSQRVPR 353

Query: 368 F 368
            
Sbjct: 354 I 354


>gi|296100680|ref|YP_003610826.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055139|gb|ADF59877.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 359

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 181/367 (49%), Gaps = 25/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +   I D +L   + +  QL   S L +  +S P    ++
Sbjct: 66  LRAGGITQPILLLEGFFEAADLPTIADQHLHTAVHNEEQL---SALETAELSEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A  F       K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEHAQAFYQRLCQCKNVRQPVNIVSHFARADEPDCGATEQQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G+  S+A+S GILL P  HF   RPGI LYG +   N+        Q V++  +++
Sbjct: 183 EGKPGMR-SIAASGGILLWPQSHFDWARPGIILYGVSPLENRPWGPDFGFQPVMSLVSKL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWTSARDTRLGVVAMGYGDGYP--------RAAPS---GTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  V I+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVKIVGRVAMDMICVDLGPDAQDKAGDDVVMWGDGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|237809465|ref|YP_002893905.1| alanine racemase [Tolumonas auensis DSM 9187]
 gi|237501726|gb|ACQ94319.1| alanine racemase [Tolumonas auensis DSM 9187]
          Length = 358

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 189/368 (51%), Gaps = 25/368 (6%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +ID  AL++N   + + +  N +  AVVK NAYG G  ++A  L +A    + V  +EE 
Sbjct: 7   QIDTQALQHNLAVVRSQIPANTKVVAVVKANAYGHGLIQVAKTLASADA--YAVARLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
           + LR       I +L G     +  ++   N+   + SV QL    ++    + +P    
Sbjct: 65  LILRSSGIVKPIIMLEGFFSADDLPVLAANNIQTAVHSVEQLDALEQMQ---LPNPVTVW 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLG+  +EA +F     N + + Q    I+H + AD+  +   + Q+E F  
Sbjct: 122 LKLDTGMHRLGVRPEEAEEFCERLANCRNVVQPFNFITHFSRADELDNLATTKQIELFNQ 181

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241
           L   Y G E SLASS+GI+   + H    RPGI LYG +  + K+   H +Q V+T +  
Sbjct: 182 LTQKYAG-ECSLASSAGIMEWHDAHADWIRPGIMLYGASPFLGKTGYDHGLQPVMTLKTS 240

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    GE V YG +    +D+ + V AIGY DGYP          +PS   G    
Sbjct: 241 LIAVRLVKQGEPVGYGAKWVAQQDTKVGVVAIGYGDGYP--------RMAPS---GVPVR 289

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VP++G+++MDM   D+    + +VGD + ++G  + ++ VA A GT  Y+L+ ++
Sbjct: 290 VNGRIVPLVGRVSMDMLTVDLGPDATDKVGDDVTLWGEGLPVETVAEAIGTIPYELITKL 349

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 350 TPRVIMEY 357


>gi|260582214|ref|ZP_05850008.1| alanine racemase [Haemophilus influenzae NT127]
 gi|260094846|gb|EEW78740.1| alanine racemase [Haemophilus influenzae NT127]
          Length = 360

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 183/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTL-EQNVDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---DALKRANLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           ++    +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + 
Sbjct: 183 SVTKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V AIGY DGYP      D      V+L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAIGYGDGYP-----RDVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|332083545|gb|EGI88765.1| alanine racemase [Shigella boydii 5216-82]
          Length = 359

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEKAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     R++ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERNTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+        GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDNAGDSVILWGEGLPVERIAEITKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|293394140|ref|ZP_06638440.1| alanine racemase [Serratia odorifera DSM 4582]
 gi|291423118|gb|EFE96347.1| alanine racemase [Serratia odorifera DSM 4582]
          Length = 359

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 184/365 (50%), Gaps = 22/365 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +   +  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRQAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G    ++  ++   N+   + S+ QL    +        P  +++D
Sbjct: 66  LRSGGIVKPILLLEGFFAAEDLPVLVANNIETAVHSIEQLEALEQ-AELARPVPVWMKID 124

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++A  F       + + Q   I+SH + AD+P+S     Q+  F +  +H
Sbjct: 125 TGMHRLGVRPEQAEAFYQRLCACRNVAQPVNIMSHFSRADEPNSDATQQQIACF-SAFAH 183

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIIL 244
            K  + S+A+S G LL P+ H +  RPGI LYG    I + H     +Q  +T ++ +I 
Sbjct: 184 GKPGQRSIAASGGTLLWPDAHNEWVRPGIILYG-VSPIEQRHGGQFDLQPAMTLKSCLIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  AGE V YGG     RD+ + V A+GY DGYP +        +P+   G   ++ G
Sbjct: 243 VREHKAGEAVGYGGTWVSPRDTRLGVVAMGYGDGYPRS--------APT---GTPIWLNG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             VPI+G+++MDM   D+    S  VGD + ++G  + ++ +A  +G   Y+L+ ++  R
Sbjct: 292 REVPIVGRVSMDMISVDLGPDASDRVGDEVVLWGAPLPVERIAEVTGIGAYELITKLTQR 351

Query: 365 YAKFY 369
            A  Y
Sbjct: 352 VAMEY 356


>gi|117620242|ref|YP_857049.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561649|gb|ABK38597.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 369

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 180/359 (50%), Gaps = 20/359 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ AL++N+  +   + +++  AV+K NAYG G   +A AL  A    + V  VEE + 
Sbjct: 8   IDIDALQHNFAVVRRHAPHSKIIAVLKANAYGHGLLPVAHALAQADA--YAVARVEEALV 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I VL G    +   ++    L   + +  QL    +  S        L++D
Sbjct: 66  LRANAITKPILVLGGFFSAEALPLLAKHELQTTLHTWEQLALLEQ-ASLPAPIKVWLKLD 124

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG NRLGL  +E   F    S  + + Q   +++H + +D+  +    +Q+E F  L +H
Sbjct: 125 TGMNRLGLRAEELPAFIERLSHCRNVVQPFHLMTHFSQSDEQDTQATRLQIEEFNRLSAH 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILI 245
             G E ++A+S+GIL  P       RPG+ LYG +    ++   H ++ V+T ++++I  
Sbjct: 185 LPG-ERAMANSAGILAWPASRSDWIRPGLMLYGASPFAGQLAADHDLRPVMTLKSQLIAT 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YGG     R++ + V A GY DGYP     +  E +P         I G 
Sbjct: 244 RACAQGEAVGYGGHWVADRNTTLGVVAAGYGDGYPR----MAPEGTPM-------LINGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            VPI+G+++MDM   D+  +   +VGD + ++G  + ++ VA   GT  Y+LL R+ +R
Sbjct: 293 QVPIVGRVSMDMITVDLGPAARDKVGDEVTLWGEGLPVEQVAEKIGTIPYELLTRLTSR 351


>gi|119503311|ref|ZP_01625395.1| alanine racemase [marine gamma proteobacterium HTCC2080]
 gi|119460957|gb|EAW42048.1| alanine racemase [marine gamma proteobacterium HTCC2080]
          Length = 355

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 193/370 (52%), Gaps = 32/370 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL NN  +   L GN++  A VK NAYG G  + + AL N  V  F V   EE 
Sbjct: 7   LSIDLNALSNNAATTRRLVGNSKILASVKANAYGHGLTRCSEAL-NQKVDGFAVAFCEEA 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR       + +L G    ++   I + +L+ V+ S  Q+    K  +C ++ P  ++
Sbjct: 66  VLLRQQGITLPLLLLEGPFDREDVDAIKEYDLMMVVHSHHQIELLQK-SACPLTSPVWIK 124

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQL----SLIISHLACADDPSSHVNSVQLERFR 183
           +DTG +RLG S  EA      S  ++L ++    +++++H    ++P+S +   Q   ++
Sbjct: 125 IDTGMHRLGFSPAEA-----PSVAQRLHEMGASSTILMTHYGEGEEPASALTQEQQRAWQ 179

Query: 184 TLISHYKGIEASLASSSGIL--LGPNYHFQLTRPGISLYGG--TDKINKSHPMQTVVTAE 239
           T  +H      S A+S+ I+  L PN  +   RPGI LYG   +D I  S  ++ V++  
Sbjct: 180 T-STHSITSATSAANSAAIINTLAPNTDWM--RPGIMLYGAAHSDPIGAS--LEAVMSFR 234

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ +R  LAG+ V YGG+ +  RDS IA   +GY DGYP       +E    V+L   
Sbjct: 235 SEVMAMRHILAGDTVGYGGRWRAQRDSTIATIPVGYGDGYP-----RGAEDGTPVWL--- 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
              +   VP++G+++MDM   D+TD     +G  ++++G  + +++VA  SGT  Y+LL 
Sbjct: 287 ---QHQCVPLVGRVSMDMITVDVTDFAGCHIGTSVELWGKHLSVNEVAKHSGTIGYELLT 343

Query: 360 RIGTRYAKFY 369
           R+  R    Y
Sbjct: 344 RLTGRVPVNY 353


>gi|317050883|ref|YP_004111999.1| alanine racemase [Desulfurispirillum indicum S5]
 gi|316945967|gb|ADU65443.1| alanine racemase [Desulfurispirillum indicum S5]
          Length = 358

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 183/367 (49%), Gaps = 23/367 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I L  +++N+  +   +G+ R   VVK +AYG G   +A  L + G   F V  V EG+
Sbjct: 7   EIHLPHIRHNFRLLQQRAGHTRIVGVVKADAYGHGDVPVALCLQSEGCTHFAVARVHEGI 66

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           KLR       I ++ G  P +   + + NL  V+     +    +++  G+S P  ++++
Sbjct: 67  KLRKAGIHGDILIMSGSFPNEFAALREFNLTTVVYCEENI---EEMVREGISVPVHIKIN 123

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF-RTLISH 188
           TG NRLG    + L + + +  +    +  I++H+ACAD+P S     Q   F R+L  +
Sbjct: 124 TGMNRLGFR-PDRLPWVYRTLTEAGFAVRGIMTHMACADEPGSPTIGAQENLFYRSLEPY 182

Query: 189 YK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
           ++ G+   L++S+GI    N    L RPGI LYGG    +K+  ++  +T + +I+ +++
Sbjct: 183 FQEGMLGHLSNSAGIFTLDNLG-SLARPGIMLYGGNPFADKTVDLRPAMTFKTKILQVKR 241

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE +SYG      R+ L+A  A GYADGY   LS              +  + G   
Sbjct: 242 VFPGEGISYGHSFVADREMLVATVAAGYADGYSRLLSN-----------KARVLVNGQYA 290

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGT 363
           P +G++ MDM+M D+T  +    GD + +FG      I   ++A   GT +Y++   I  
Sbjct: 291 PQVGRVCMDMSMVDVT-HIQPARGDEVVLFGEQRGQCIYASELAELMGTIDYEVFCGISP 349

Query: 364 RYAKFYT 370
           R  + YT
Sbjct: 350 RVKRIYT 356


>gi|322834774|ref|YP_004214801.1| alanine racemase [Rahnella sp. Y9602]
 gi|321169975|gb|ADW75674.1| alanine racemase [Rahnella sp. Y9602]
          Length = 359

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 184/367 (50%), Gaps = 26/367 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           ID  AL++N   +  L+  +R  AVVK NAYG G  +   +L +A   D++ V+ + E +
Sbjct: 8   IDRRALRHNLQRVRHLAPQSRLVAVVKANAYGHGLLETVHSLQDA---DYYGVSRLSEAL 64

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YAL 126
            LR       I +L G     E  ++ +  L   + S+ QL     L S  ++ P    L
Sbjct: 65  MLRKAGVVKPILLLEGFFSASELPLLIEHQLDTAVHSLEQL---DALESADLARPLNVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG+   +A  F    S  K + Q   ++SH   AD+P S     QL  F   
Sbjct: 122 KIDTGMHRLGVHPAQADAFYQRLSACKNVVQPVNMMSHFCRADEPESDATPKQLNCFNEF 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARI 242
                G + S+A+S GILL P  H  L RPGI LYG +     +     +Q V+T  + +
Sbjct: 182 AEGKPG-QKSIAASGGILLWPESHMNLVRPGIILYGVSPMETGTASDFGLQPVMTLTSSL 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YG      RD+ + V A+GY DGYP +        +P+   G    +
Sbjct: 241 IAVREHAAGEPVGYGSTWVSNRDTRLGVVAMGYGDGYPRS--------APN---GTPVLV 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VP+ G+++MDM   D+    + +VGD +  +G  + ++ +A A+G + Y+L+ ++ 
Sbjct: 290 NGREVPVAGRVSMDMITVDLGPDATDKVGDEVIFWGGKLPVERIAQATGISAYELITQLS 349

Query: 363 TRYAKFY 369
            R A+ Y
Sbjct: 350 ERVARVY 356


>gi|58257632|dbj|BAD88777.1| alanine racemase [synthetic construct]
          Length = 359

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 178/372 (47%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEGQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEHKPWGPDFGFQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R   AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G    ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGFPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|209693985|ref|YP_002261913.1| alanine racemase [Aliivibrio salmonicida LFI1238]
 gi|259710062|sp|B6ELK6|ALR_ALISL RecName: Full=Alanine racemase
 gi|208007936|emb|CAQ78068.1| alanine racemase [Aliivibrio salmonicida LFI1238]
          Length = 358

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 28/369 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +ID++AL +N   +   + N++  AVVK N YG G   IA   +  GV  F V  +EE +
Sbjct: 7   QIDMSALAHNLQKIKQQAPNSKLLAVVKANGYGHGLLNIAKGAH--GVDAFGVARIEEAL 64

Query: 70  KLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
           +LR      ++ +L G +  G   I+   N+   +    QL     L +  +  P    L
Sbjct: 65  QLRAGGIVKQVLLLEGFYSAGDLPILVANNIQTAVHCKEQL---EALENADLEGPVVVWL 121

Query: 127 QVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +VD+G +RLG+     QE +D  H    K + Q    +SH  CAD+  +   + Q+E F 
Sbjct: 122 KVDSGMHRLGIRPEEYQEYVDRLHAC--KNVAQPLRYMSHFGCADELDNPTTNEQIETFM 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEA 240
           +L    +G E SLA+S+G+L  P+      RPGI +YG +   +K  +       +T  +
Sbjct: 180 SLTDGCQG-ERSLAASAGLLAWPDSQLDWVRPGIIMYGVSPFSEKTAQDLGYLPTMTLTS 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R+  AGE V YG      RD+ I V AIGY DGYP+         +P+   G   
Sbjct: 239 HLIAVREVKAGESVGYGAMWTSERDTKIGVIAIGYGDGYPIA--------APN---GTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  VP+ G+++MDM   D+       VGD   ++G D+  ++VA   GT  Y+L+ +
Sbjct: 288 LVNGRKVPVAGRVSMDMLTVDLGPDAEDNVGDEAILWGRDLPAEEVAEHIGTIAYELVTK 347

Query: 361 IGTRYAKFY 369
           + +R    Y
Sbjct: 348 LTSRVQMQY 356


>gi|261254033|ref|ZP_05946606.1| alanine racemase biosynthetic [Vibrio orientalis CIP 102891]
 gi|260937424|gb|EEX93413.1| alanine racemase biosynthetic [Vibrio orientalis CIP 102891]
          Length = 358

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 183/367 (49%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + N++  AVVK N+YG G   IA   +  G   F V  +EE ++
Sbjct: 8   INLEALQHNLELIKQQAPNSKVMAVVKANSYGHGLRHIAK--HAQGADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +  G   ++   N+  V+    QL     L    +  P    L+
Sbjct: 66  LRACGVVKPILLLEGFYSQGDLPVLVTNNIQTVVHCEEQL---QALEQAELETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++  +F T     + + +    +SH  CAD+      + Q E F +L 
Sbjct: 123 IDSGMHRLGVRPEQYSEFVTRLKACRNVAKPLRYMSHFGCADELDKSTTNQQTELFLSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
              +G E SLA+S+G+L  P+   +  RPGI +YG +   D+  +    Q V+T ++ +I
Sbjct: 183 EGCEG-ERSLAASAGLLAWPDSQLEWVRPGIIMYGVSPFNDRSAQELGYQPVMTLKSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YGG     RD+ + V AIGY DGYP T        +P+   G    + 
Sbjct: 242 AVRDVKAGESVGYGGMWTSQRDTKVGVIAIGYGDGYPRT--------APN---GTPVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G   PI G+++MDM   D+    S +VGD   ++G  +  ++VA   GT  Y+L+ ++ +
Sbjct: 291 GRKAPIAGRVSMDMLTVDLGPDASDKVGDEAILWGNQLPAEEVASHIGTIAYELVTKLTS 350

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 351 RVDMEYS 357


>gi|95930765|ref|ZP_01313498.1| alanine racemase [Desulfuromonas acetoxidans DSM 684]
 gi|95133245|gb|EAT14911.1| alanine racemase [Desulfuromonas acetoxidans DSM 684]
          Length = 371

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 178/376 (47%), Gaps = 30/376 (7%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + IDL AL++N+H +   +  + R  AVVK +AYG G   +A  L  AG   F V  VEE
Sbjct: 9   VAIDLDALRHNYHVLRETMRPDWRMLAVVKADAYGHGAVPVARTLEEAGADLFGVAIVEE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYAL 126
           G++LR       I +L G  PGQE ++ + +L   +  + QL          G S    L
Sbjct: 69  GLELRAAGITRPILMLGGPWPGQEPVVIEHDLHVAVFEIEQLQRLEHAARQAGKSCFCHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT-- 184
           ++D+G  RLG+  ++  +        +  QL  I++H A AD P   + + Q   F+   
Sbjct: 129 KIDSGMGRLGVRDEQLDEVLRFFLASEALQLVGIMTHFALADCPDHPLTAQQQAHFKRAL 188

Query: 185 -------LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
                  LI  Y     S A+ S +  G N    L RPGI+LYGG    +++ P++ V+ 
Sbjct: 189 AKVRDAGLIPEYIHSSNSAATFSDVNGGCN----LVRPGIALYGGQPFEDRTLPLEPVMA 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               I  +++   G  VSYG +    R +LIA   +GYADGY   LS             
Sbjct: 245 LRTEIAHLKQLPTGSGVSYGHRFIAQRPTLIAAIPVGYADGYNRLLSNC----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   ++G  V + G + MD T+ D+TD  +++ GD + + G D    +  +  A   GT 
Sbjct: 294 GTALVRGQKVAVAGTVCMDWTLLDVTDVANVQCGDRVTLLGCDGDECVLAEQWAEKVGTI 353

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++  +I  R  + Y
Sbjct: 354 SYEVFCQISKRVPRHY 369


>gi|281181122|dbj|BAI57452.1| alanine racemase [Escherichia coli SE15]
          Length = 359

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEANLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + G  + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGAPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|158425840|ref|YP_001527132.1| alanine racemase [Azorhizobium caulinodans ORS 571]
 gi|158332729|dbj|BAF90214.1| alanine racemase [Azorhizobium caulinodans ORS 571]
          Length = 374

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 163/364 (44%), Gaps = 15/364 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+IDL A++ NW ++ A        AVVK NAYG G  +I P L + G +DF+V  +EE 
Sbjct: 11  LEIDLGAVRQNWRTVRAQYRGPTLGAVVKQNAYGFGLSRIVPLLSSLGCRDFWVVCIEEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + +R   P AR+FVL+G+            +IPV+    +L       +       A+Q 
Sbjct: 71  LAVRTLAPDARVFVLHGLAGAAPADFRAHRIIPVLMDASELPRVQAEAAARGPLDVAIQF 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG +RLGLS  +      +       +++  ++HLA   +P +  N  Q  RFR     
Sbjct: 131 DTGLSRLGLSRTDVKRLRDDPSPLAGLRIAAYVTHLAHFSNPVARHNDWQWRRFRAWTQA 190

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
                 S  +S+G+   P  H    R G +LYG     +   P+       A I+ +   
Sbjct: 191 LPPAPLSFCASAGVFGPPERHAHHARVGSALYGVETTPSSRQPILPAARLTAPILRVMDV 250

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            AG  V YGG  +  + + +A   +GY  G P +                 G++ G   P
Sbjct: 251 PAGTEVGYGGVYRTPQPARLAHVGVGYGGGLPFSFQ-----------RQAYGYVGGLPAP 299

Query: 309 ILGKITMDMTMFDIT---DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           I+  + M +   D++   + L++  G  +++FGP   +D +A A+G     ++V  G R 
Sbjct: 300 IVSGLAMSLMTLDVSGLPEGLAVP-GAQVELFGPAQPVDILAAAAGVAPNVVMVSAGART 358

Query: 366 AKFY 369
            + Y
Sbjct: 359 RRVY 362


>gi|256019701|ref|ZP_05433566.1| alanine racemase [Shigella sp. D9]
 gi|332280832|ref|ZP_08393245.1| alanine racemase 1 [Shigella sp. D9]
 gi|332103184|gb|EGJ06530.1| alanine racemase 1 [Shigella sp. D9]
          Length = 359

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG      D+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSECDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|239996484|ref|ZP_04717008.1| alanine racemase [Alteromonas macleodii ATCC 27126]
          Length = 358

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 186/361 (51%), Gaps = 18/361 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL +N+ ++ AL+ ++++ AVVK +AYG G   +A  L +   + F V  +EE + 
Sbjct: 9   IHADALLHNFKALAALAPSSQSMAVVKADAYGHGAVNVARILQHVSSR-FAVAIIEEAIA 67

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR     A I VL G H  +E ++ F  N I V+    QLT+          H + L+VD
Sbjct: 68  LRDAGISAPIVVLEGAHQAKECQMAFQHNCILVMHCEEQLTWLESCPEQQRPHIW-LKVD 126

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G +RLG +L +    T   +N  L + ++I +H ACADD  ++  + Q++ F  + S  
Sbjct: 127 SGMHRLGFALSDIEGIT-AKYNHLLSEQTVIATHFACADDVDNNFTNTQIDAFNQVASKL 185

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT--VVTAEARIILIRK 247
             +  S+A+S   +  P       R G+ +YGG    +++  ++    +T  + ++ +R 
Sbjct: 186 D-LPTSVANSPATVNWPASRNAWNRLGVGVYGGAVSTSQNLDIEIYPAMTLRSSVLAVRT 244

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AGE + YG     ++ S IA   IGYADGYP         H  +   G    I+G   
Sbjct: 245 IPAGEGIGYGQTWVASKPSKIATVGIGYADGYP--------RHCKN---GTPVLIRGKRA 293

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
            ++G+++MDM   D+T   ++ VGD ++++G ++ + +VA  + T +Y+L+ R+  R  +
Sbjct: 294 YLVGRVSMDMITIDVTHIDNVAVGDEVELWGQNVPIQEVAANADTIDYELMTRVSQRVPR 353

Query: 368 F 368
            
Sbjct: 354 I 354


>gi|145627697|ref|ZP_01783498.1| alanine racemase [Haemophilus influenzae 22.1-21]
 gi|144979472|gb|EDJ89131.1| alanine racemase [Haemophilus influenzae 22.1-21]
          Length = 360

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 188/368 (51%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L  + V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---DALKRANLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           ++    +G E ++A+S GIL  P+ H +  RPGI +YG   TD I K   +  V+   + 
Sbjct: 183 SVTKDKQG-ERTIAASGGILFWPDSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V A+GY DGYP  +     E +P ++L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPSNVP----EGTP-IYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|16762928|ref|NP_458545.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16767497|ref|NP_463112.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29144415|ref|NP_807757.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56416047|ref|YP_153122.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161617376|ref|YP_001591341.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167552528|ref|ZP_02346281.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167991437|ref|ZP_02572536.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168236939|ref|ZP_02661997.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168243645|ref|ZP_02668577.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168821308|ref|ZP_02833308.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194448214|ref|YP_002048237.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194735891|ref|YP_002117180.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262039|ref|ZP_03162113.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364974|ref|YP_002144611.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198244007|ref|YP_002218141.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|204927044|ref|ZP_03218246.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205355019|ref|YP_002228820.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859401|ref|YP_002246052.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213051931|ref|ZP_03344809.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213424514|ref|ZP_03357311.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213647520|ref|ZP_03377573.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|238913004|ref|ZP_04656841.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289824655|ref|ZP_06544182.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|60391222|sp|P0A1A3|ALR1_SALTY RecName: Full=Alanine racemase, biosynthetic
 gi|60391223|sp|P0A1A4|ALR1_SALTI RecName: Full=Alanine racemase, biosynthetic
 gi|25291655|pir||AF1016 alanine racemase (EC 5.1.1.1) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|153865|gb|AAA27022.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16422805|gb|AAL23071.1| biosynthetic alanine racemase 1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16505235|emb|CAD09231.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140053|gb|AAO71617.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56130304|gb|AAV79810.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161366740|gb|ABX70508.1| hypothetical protein SPAB_05231 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406518|gb|ACF66737.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194711393|gb|ACF90614.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197096451|emb|CAR62057.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197240294|gb|EDY22914.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197290054|gb|EDY29413.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197938523|gb|ACH75856.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|204323709|gb|EDZ08904.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205274800|emb|CAR39859.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205322805|gb|EDZ10644.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330206|gb|EDZ16970.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205337286|gb|EDZ24050.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205342080|gb|EDZ28844.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206711204|emb|CAR35580.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261249345|emb|CBG27208.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996559|gb|ACY91444.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160739|emb|CBW20270.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915352|dbj|BAJ39326.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320088655|emb|CBY98413.1| alanine racemase 1 [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223115|gb|EFX48185.1| Alanine racemase, biosynthetic [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615403|gb|EFY12323.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618463|gb|EFY15352.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622125|gb|EFY18975.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627196|gb|EFY23988.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631156|gb|EFY27920.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637626|gb|EFY34327.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642511|gb|EFY39111.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322643608|gb|EFY40163.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648343|gb|EFY44802.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654652|gb|EFY50972.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659612|gb|EFY55855.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662179|gb|EFY58395.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666075|gb|EFY62253.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672495|gb|EFY68606.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675924|gb|EFY71995.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680409|gb|EFY76447.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684697|gb|EFY80701.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132586|gb|ADX20016.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195961|gb|EFZ81127.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197109|gb|EFZ82250.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201773|gb|EFZ86837.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206287|gb|EFZ91249.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213298|gb|EFZ98100.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215668|gb|EGA00412.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222091|gb|EGA06477.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226502|gb|EGA10708.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229127|gb|EGA13256.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236263|gb|EGA20339.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237617|gb|EGA21678.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241717|gb|EGA25746.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248136|gb|EGA32073.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323254534|gb|EGA38345.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258406|gb|EGA42083.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323259686|gb|EGA43320.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265959|gb|EGA49455.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270401|gb|EGA53849.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625939|gb|EGE32284.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326630171|gb|EGE36514.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332991063|gb|AEF10046.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 359

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +P IS+      V      + L +  ++ P 
Sbjct: 66  LRAGGITQPILLLEGF--------FDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVT 237
           F        G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++
Sbjct: 178 FNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R   AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|209751258|gb|ACI73936.1| alanine racemase 1 [Escherichia coli]
 gi|320644177|gb|EFX13242.1| alanine racemase [Escherichia coli O157:H- str. 493-89]
 gi|320649496|gb|EFX18020.1| alanine racemase [Escherichia coli O157:H- str. H 2687]
          Length = 359

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 179/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++        Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRPTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+   GE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|16273470|ref|NP_439721.1| alanine racemase [Haemophilus influenzae Rd KW20]
 gi|260580354|ref|ZP_05848183.1| alanine racemase [Haemophilus influenzae RdAW]
 gi|1168421|sp|P45257|ALR_HAEIN RecName: Full=Alanine racemase
 gi|1574412|gb|AAC23218.1| alanine racemase, biosynthetic (alr) [Haemophilus influenzae Rd
           KW20]
 gi|260093031|gb|EEW76965.1| alanine racemase [Haemophilus influenzae RdAW]
          Length = 360

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 183/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTL-EQNVDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---DALKRANLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           ++    +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + 
Sbjct: 183 SVTKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V A+GY DGYP      D      V+L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----DVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|62182696|ref|YP_219113.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224586012|ref|YP_002639811.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62130329|gb|AAX68032.1| alanine racemase 1, biosynthetic [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224470540|gb|ACN48370.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322717195|gb|EFZ08766.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 359

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +P IS+      V      + L +  ++ P 
Sbjct: 66  LRAGGITQPILLLEGF--------FDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVT 237
           F        G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++
Sbjct: 178 FSAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R   AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|37681162|ref|NP_935771.1| alanine racemase [Vibrio vulnificus YJ016]
 gi|81859828|sp|Q7MH94|ALR_VIBVY RecName: Full=Alanine racemase
 gi|37199913|dbj|BAC95742.1| alanine racemase [Vibrio vulnificus YJ016]
          Length = 372

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 185/372 (49%), Gaps = 34/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   +   + +++  AVVK N YG G   +A   +  G   F V  +EE ++
Sbjct: 22  IDLVALQHNLQLIKQQAPHSKLMAVVKANGYGHGLRHVAK--HAVGADAFGVARIEEALQ 79

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +  G   ++   N+  V+    QL     L +  +  P    L+
Sbjct: 80  LRACGVVKPILLLEGFYSSGDLPVLVTNNIQTVVHCEEQL---RDLENAELETPVVVWLK 136

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLER 181
           +D+G +RLG+  ++     + +F ++L Q   +      +SH  CAD+ ++ +   Q+E 
Sbjct: 137 IDSGMHRLGVRPEQ-----YQAFVERLHQCPNVAKPLRYMSHFGCADEMNNEMTPKQIEL 191

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           F +L    KG E SLA+S+G+L       +  RPGI +YG +   DK       + V+T 
Sbjct: 192 FLSLTRGCKG-ERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGYKPVMTL 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I +R   AGE V YG      RD+ + V AIGY DGYP T        +P+   G 
Sbjct: 251 KSHLIAVRDVKAGESVGYGATWISERDTKVGVIAIGYGDGYPRT--------APN---GT 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G  VPI G+++MDM   D+    +  VGD   ++G D+  +DVA   GT  Y+L+
Sbjct: 300 PVLVNGRKVPIAGRVSMDMLTVDLGPDATDHVGDEAILWGADLPAEDVAQHIGTIAYELV 359

Query: 359 VRIGTRYAKFYT 370
            ++ +R    Y+
Sbjct: 360 TKLTSRVEMSYS 371


>gi|78211897|ref|YP_380676.1| alanine racemase [Synechococcus sp. CC9605]
 gi|78196356|gb|ABB34121.1| alanine racemase [Synechococcus sp. CC9605]
          Length = 376

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/322 (34%), Positives = 163/322 (50%), Gaps = 25/322 (7%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEK 92
           AVVK + YG G E +A A    G     V +++EG++LR    +A + +L  ++ P   +
Sbjct: 39  AVVKADGYGHGAETVARAALQGGATSLGVATLQEGLELRRAGLEAPVLLLSNLNEPDDLR 98

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
                 L+P +SS+      + L +  G      L++DTG  RLG SL E       +  
Sbjct: 99  TCLHWRLMPTLSSLRDAQLCNALAADSGRCFDVQLKIDTGMARLGCSLSEG--HQTAAVL 156

Query: 152 KKLGQLSL--IISHLACADDPSSHVNSVQLERFRTLISHY----KGIEASLASSSGILLG 205
           + L  L+L  I SHLACAD+P   + S+Q ERF +++S       GI   LA+S+G LL 
Sbjct: 157 QSLEHLNLEGIYSHLACADEPDDALTSLQQERFVSMLSALPRGGAGITRHLANSAGTLLN 216

Query: 206 PNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
              H  L R G++LYG      +N   P+Q  +   AR+ LIR  +AG  VSYG +    
Sbjct: 217 RELHHDLVRVGLALYGHAPASHLNNVIPLQPALAVRARVSLIRDVIAGTGVSYGHRFITQ 276

Query: 264 RDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
           R + +AV  IGYADG   +LSG + + HS               +P +G ITMD  + D 
Sbjct: 277 RPTRLAVVGIGYADGVLRSLSGHIHALHS------------NRQLPQVGAITMDQLLLDA 324

Query: 323 TDSLSIEVGDYIQIFGPDIKLD 344
           TD+  +E GD + + G D  L+
Sbjct: 325 TDAAGLEPGDIVTLLGQDGDLE 346


>gi|325499632|gb|EGC97491.1| alanine racemase [Escherichia fergusonii ECD227]
          Length = 359

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 39/374 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLIETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSK-----LMSCGVSHPY 124
           LR       I +L G         F+ + +P IS+   Q   +++     L +  +  P 
Sbjct: 66  LRAGGITQPILLLEGF--------FEADDLPTISAEHLQTAVHNEEQLVALETAELKEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F    S  K + Q   I+SH A AD+P S     QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVLPEQAEAFYQRLSQCKNVRQPVNIVSHFARADEPQSGATEKQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------GTDKINKSHPMQTV 235
           F T      G + S+A+S GILL P  HF   RPGI LYG      GT   +     Q V
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEDGTTGADFG--CQPV 234

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS  
Sbjct: 235 MSLTSSLIAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYP--------RAAPS-- 284

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y
Sbjct: 285 -GTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAAMTKVSAY 343

Query: 356 DLLVRIGTRYAKFY 369
           +L+ R+ +R A  Y
Sbjct: 344 ELITRLTSRVAMKY 357


>gi|168263431|ref|ZP_02685404.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|194444595|ref|YP_002043497.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194403258|gb|ACF63480.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|205347865|gb|EDZ34496.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 359

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +P IS+      V      + L +  ++ P 
Sbjct: 66  LRAGGITQPILLLEGF--------FDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVT 237
           F        G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++
Sbjct: 178 FNAFCRGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R   AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|260436550|ref|ZP_05790520.1| alanine racemase [Synechococcus sp. WH 8109]
 gi|260414424|gb|EEX07720.1| alanine racemase [Synechococcus sp. WH 8109]
          Length = 376

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 175/355 (49%), Gaps = 34/355 (9%)

Query: 12  DLTALKNNWHSMN--ALSGNART-----------AAVVKDNAYGLGCEKIAPALYNAGVQ 58
           +L   +  W  ++  A+ GNAR             AVVK + YG G E +A A    G  
Sbjct: 4   ELNPRQRAWVEVSPAAIRGNARALCQHLGPRTQLMAVVKADGYGHGAETVARAALQGGAT 63

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
              V +++EG++LR    +A + +L  ++ P   +      L+P +SS+ +    + L +
Sbjct: 64  SLGVATLQEGLELRRAGLEAPVLLLSNLNKPDDLRTCLHWGLMPTLSSLREAQLCNALAA 123

Query: 118 -CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             G      L++DTG  RLG SL E         + +   L  I SHLACAD+P+  + S
Sbjct: 124 DSGRCFDVQLKIDTGMARLGCSLSEGHQTAAELESLEHLNLEGIYSHLACADEPNDALTS 183

Query: 177 VQLERFRTLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-- 230
           +Q ERF ++++       GI   LA+S+G LL    H  L R G++LYG     + S+  
Sbjct: 184 LQQERFVSMLAALPQAGAGITRHLANSAGTLLNRELHHDLVRVGLALYGHAPASHLSNVI 243

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSE 289
           P+Q  +   AR+ LIR+  AG  VSYG +    R + +AV  IGYADG   +LSG + + 
Sbjct: 244 PLQPALAVRARVSLIREVPAGTGVSYGHRFITERPTRLAVVGIGYADGVLRSLSGRIHAL 303

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344
           H            +   +P +G ITMD  + D TD+  +E GD + + G D  L+
Sbjct: 304 H------------RNRQLPQVGAITMDQLLLDATDAAELEQGDIVTLLGQDGDLE 346


>gi|168231244|ref|ZP_02656302.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168466930|ref|ZP_02700778.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194472435|ref|ZP_03078419.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197249755|ref|YP_002149160.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|194458799|gb|EDX47638.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195630651|gb|EDX49263.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197213458|gb|ACH50855.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|205334185|gb|EDZ20949.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 359

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +P IS+      V      + L +  ++ P 
Sbjct: 66  LRAGGITQPILLLEGF--------FDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVT 237
           F        G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++
Sbjct: 178 FNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R   AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEITKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|326423831|ref|NP_760315.2| alanine racemase [Vibrio vulnificus CMCP6]
 gi|34098535|sp|Q8DCL0|ALR1_VIBVU RecName: Full=Alanine racemase 1
 gi|319999201|gb|AAO09842.2| alanine racemase [Vibrio vulnificus CMCP6]
          Length = 358

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 185/372 (49%), Gaps = 34/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   +   + +++  AVVK N YG G   +A   +  G   F V  +EE ++
Sbjct: 8   IDLVALQHNLQLIKQQAPHSKLMAVVKANGYGHGLRHVAK--HAVGADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +  G   ++   N+  V+    QL     L +  +  P    L+
Sbjct: 66  LRACGVVKPILLLEGFYSSGDLPVLVTNNIQTVVHCEEQL---RDLENAELETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLER 181
           +D+G +RLG+  ++     + +F ++L Q   +      +SH  CAD+ ++ +   Q+E 
Sbjct: 123 IDSGMHRLGVRPEQ-----YQAFVERLHQCPNVAKPLRYMSHFGCADEMNNEMTPKQIEL 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           F +L    KG E SLA+S+G+L       +  RPGI +YG +   DK       + V+T 
Sbjct: 178 FLSLTRGCKG-ERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGYKPVMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I +R   AGE V YG      RD+ + V AIGY DGYP T        +P+   G 
Sbjct: 237 KSHLIAVRDVKAGESVGYGATWISERDTKVGVIAIGYGDGYPRT--------APN---GT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G  VPI G+++MDM   D+    +  VGD   ++G D+  +DVA   GT  Y+L+
Sbjct: 286 PVLVNGRKVPIAGRVSMDMLTVDLGPDATDHVGDEAILWGADLPAEDVAQHIGTIAYELV 345

Query: 359 VRIGTRYAKFYT 370
            ++ +R    Y+
Sbjct: 346 TKLTSRVEMSYS 357


>gi|145632963|ref|ZP_01788696.1| alanine racemase [Haemophilus influenzae 3655]
 gi|144986619|gb|EDJ93185.1| alanine racemase [Haemophilus influenzae 3655]
          Length = 360

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 180/367 (49%), Gaps = 24/367 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L  + V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
            LR       I +L G    Q+  I   N I  I  V        L    +  P    L+
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETI--VHNREQLEALKRANLPSPIKVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFRT 184
           +DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF +
Sbjct: 126 IDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFLS 183

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARI 242
                +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + +
Sbjct: 184 ATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIIYGISPTDTIGKEFDLTPVMNLTSSL 242

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R    G+ V YGG     RD+ I V A+GY DGYP      D      V+L G+   
Sbjct: 243 IAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----DVPEGTPVYLNGR--- 294

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
              +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++ 
Sbjct: 295 ---LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKLT 351

Query: 363 TRYAKFY 369
            R    Y
Sbjct: 352 PRVITEY 358


>gi|88858927|ref|ZP_01133568.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           tunicata D2]
 gi|88819153|gb|EAR28967.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           tunicata D2]
          Length = 358

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 182/375 (48%), Gaps = 40/375 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I L AL +N+  +   +  ++  AV+K NAYG G   IA  L +A    F V  ++E +
Sbjct: 7   EISLAALDHNFKRVKEFAPASQIMAVLKANAYGHGLVAIAKRLSSADA--FAVARIDEAL 64

Query: 70  KLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G   P    I+   N   +I    QL     LM+C +       L
Sbjct: 65  ALRAGGLVKPIVLLEGFFEPQDLPILLANNFQTIIHHQSQL---DALMNCDLDGMLTTWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS---------LIISHLACADDPSSHVNSV 177
           ++DTG +RLG+S ++        F+K    LS          +++H ACADD S+     
Sbjct: 122 KIDTGMHRLGISPEQ--------FSKAYQTLSQCEHVNPNIRLMTHFACADDLSNGKTQQ 173

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQT 234
           QL  F  LI+  K  +  LA+S+ I+  P+ H    RPG+ +YG +  +NK    H +  
Sbjct: 174 QLAVFSELIADKKQ-QTCLANSAAIIGWPDSHGDWVRPGLMMYGVSPMLNKVGADHGLAP 232

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  + R+I +R    GE V YG       D++I V A+GY DGYP         H+PS 
Sbjct: 233 VMRLKTRLISLRVVKKGEAVGYGSTWTCPIDTIIGVVAMGYGDGYP--------RHAPS- 283

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G  VP++G+++MDM   D+      ++GD + ++GP++ ++ VA  + T  
Sbjct: 284 --GTPVMVNGKQVPLVGRVSMDMITVDLGLETDAKIGDQVILWGPELPVEVVAQCADTIP 341

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LL  I  R    Y
Sbjct: 342 YELLCNITPRVDYHY 356


>gi|332711200|ref|ZP_08431133.1| alanine racemase [Lyngbya majuscula 3L]
 gi|332350014|gb|EGJ29621.1| alanine racemase [Lyngbya majuscula 3L]
          Length = 408

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 181/373 (48%), Gaps = 25/373 (6%)

Query: 10  KIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +ID  AL +N   +  L  +  +  AVVK +AYG G   +A     AG     V +V EG
Sbjct: 44  EIDQVALHHNLRQIQQLWRHPTQLMAVVKADAYGHGALTVARTAIEAGAGGLCVATVSEG 103

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126
           ++LR    +A I +L   + P Q K I    L P + +  Q L F   L     S P  L
Sbjct: 104 IQLRQGGIKATILLLGATNTPEQVKAIAHWQLEPTLCNPQQALVFSETLSGLNQSLPVHL 163

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG +RLG+  Q+A++F          +++ + SHLA AD P   V   Q +RF+  I
Sbjct: 164 KLDTGMSRLGMPWQDAIEFVRLVQQLPNLEIASVYSHLATADSPDPTVMRQQHQRFKNAI 223

Query: 187 SHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
           +  +  GI      LA+S+  L     H+   R G+++YG    + + K   ++ V+  +
Sbjct: 224 AQLQAGGITPPRLHLANSAATLTDSALHYDWVRVGLAVYGLYPAEHLQKVIHLKPVMQVK 283

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARI  I+    G  +SYG Q    R   +AV  IGYADG P  LS   +           
Sbjct: 284 ARITQIKTIPPGTGISYGHQFISNRQMRLAVVGIGYADGVPRNLSNRINV---------- 333

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G  VP +G ITMD  M D++D  +I+VG+ + + G D    I  DD A+A GT ++
Sbjct: 334 -IIRGQQVPQIGAITMDQLMLDVSDIPNIQVGEIVTLIGQDGEEQISADDWAMALGTISW 392

Query: 356 DLLVRIGTRYAKF 368
           +++     R  + 
Sbjct: 393 EIICGFKHRLPRV 405


>gi|146309923|ref|YP_001174997.1| alanine racemase [Enterobacter sp. 638]
 gi|145316799|gb|ABP58946.1| alanine racemase [Enterobacter sp. 638]
          Length = 359

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 181/367 (49%), Gaps = 25/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +   I D +L   I +  QL     L +  +S P    ++
Sbjct: 66  LRAGGITQPILLLEGFFEATDLTTIADQHLHTAIHNEEQLL---ALETAELSEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F    S  K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSQCKNVHQPVNIVSHFARADEPECGATEQQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G+  S+A+S GILL P  HF   RPGI LYG +   NK       +Q V++  + +
Sbjct: 183 EGKPGMR-SIAASGGILLWPQSHFDWARPGIILYGVSPLENKPWGPDFGLQPVMSLVSNL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG      D+ + V A+GY DGYP          +PS   G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSESDTRLGVVAMGYGDGYPRA--------APS---GTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  V I+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVKIVGRVAMDMICVDLGPDAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|320155181|ref|YP_004187560.1| alanine racemase, biosynthetic [Vibrio vulnificus MO6-24/O]
 gi|319930493|gb|ADV85357.1| alanine racemase, biosynthetic [Vibrio vulnificus MO6-24/O]
          Length = 361

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 185/372 (49%), Gaps = 34/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   +   + +++  AVVK N YG G   +A   +  G   F V  +EE ++
Sbjct: 11  IDLVALQHNLQLIKQQAPHSKLMAVVKANGYGHGLRHVAK--HAVGADAFGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +  G   ++   N+  V+    QL     L +  +  P    L+
Sbjct: 69  LRACGVVKPILLLEGFYSSGDLPVLVTNNIQTVVHCEEQL---RDLENAELETPVVVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLER 181
           +D+G +RLG+  ++     + +F ++L Q   +      +SH  CAD+ ++ +   Q+E 
Sbjct: 126 IDSGMHRLGVRPEQ-----YQAFVERLHQCPNVAKPLRYMSHFGCADEMNNEMTPKQIEL 180

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           F +L    KG E SLA+S+G+L       +  RPGI +YG +   DK       + V+T 
Sbjct: 181 FLSLTRGCKG-ERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGYKPVMTL 239

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I +R   AGE V YG      RD+ + V AIGY DGYP T        +P+   G 
Sbjct: 240 KSHLIAVRDVKAGESVGYGATWISERDTKVGVIAIGYGDGYPRT--------APN---GT 288

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G  VPI G+++MDM   D+    +  VGD   ++G D+  +DVA   GT  Y+L+
Sbjct: 289 PVLVNGRKVPIAGRVSMDMLTVDLGPDATDHVGDEAILWGADLPAEDVAQHIGTIAYELV 348

Query: 359 VRIGTRYAKFYT 370
            ++ +R    Y+
Sbjct: 349 TKLTSRVEMSYS 360


>gi|253991385|ref|YP_003042741.1| alanine racemase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782835|emb|CAQ86000.1| alanine racemase) [Photorhabdus asymbiotica]
          Length = 359

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 180/366 (49%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +   AVVK NAYG G  + A  L +A    F V  + E + 
Sbjct: 8   IDRRALRHNLQRVREIAPKSNLIAVVKANAYGHGLLETAHTLDDADC--FGVARIGEALT 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  +   N I  V+ S+ QL     L    +SHP    ++
Sbjct: 66  LRHGGIVKPILLLEGCFDAADLPVLVANHIETVVHSIEQL---EALEQAKLSHPVKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++A +F    S  K + Q   I+SH   AD+P+      Q+  F+   
Sbjct: 123 LDSGMHRLGVRPEDAEEFYQRLSRCKNVQQPVNIVSHFGRADEPTLDTTCQQIACFQAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           +   G E S+ +S GILL P  H    RPG+ +YG +   DK      +   +T ++ +I
Sbjct: 183 ADKPG-EKSIDASGGILLWPEVHQDWVRPGLMMYGVSPLSDKTAADFNLMPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK  AGE V YGG     RD+ + V AIGY DGYP          +PS   G   +I 
Sbjct: 242 AVRKHKAGEAVGYGGTWISERDTCLGVVAIGYGDGYPRC--------APS---GTPIYIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +VGD   ++G  + ++ +A  +G   Y+L+ ++ +
Sbjct: 291 GREVPIAGRVSMDMISVDLGPDAADKVGDEAVLWGDVLPVERIAECTGIITYELVTKLTS 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RVVMEY 356


>gi|325578240|ref|ZP_08148375.1| alanine racemase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159976|gb|EGC72105.1| alanine racemase [Haemophilus parainfluenzae ATCC 33392]
          Length = 360

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 185/368 (50%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK+N   +   + +++  AVVK NAYG G   ++ AL  + V  F V  +EE +
Sbjct: 9   KISSLALKHNLQVIKEKAPHSKIIAVVKANAYGHGVVFVSSAL-ESMVDCFAVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    ++  II   N+  V+ +  QL     L    V  P    L
Sbjct: 68  SLRSNGIIKPILLLEGFFDEKDLPIIAVNNIETVVHNREQL---EALKRAAVPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG+SL E +D+ +    KKL Q+      +SH + AD+  S    VQL+RF 
Sbjct: 125 KIDTGMHRLGVSLDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELDSDYTQVQLDRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
                 KG E ++A+S GIL  P  H    RPGI +YG   TD +     +  V+   + 
Sbjct: 183 QATKD-KGGERTIAASGGILFWPEAHLDCIRPGIIMYGISPTDTVGAEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ +R+   GE V YGG     +D+ I V AIGY DGYP      D      V+L G+  
Sbjct: 242 LLAVREHKKGEPVGYGGIWTSPKDTKIGVVAIGYGDGYPR-----DVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VP +G+++MDM   D+      +VGD + ++G ++ ++ VA  SG  +Y+L+ ++
Sbjct: 295 ----IVPSVGRVSMDMLTVDLGADSQDKVGDEVILWGKELPIETVAKYSGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|200386495|ref|ZP_03213107.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199603593|gb|EDZ02138.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 359

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +P IS+      V      + L +  ++ P 
Sbjct: 66  LRAGGITQPILLLEGF--------FDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEEAEAFYQRLTRCKNVRQPVNIVSHFARADEPECGATEHQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVT 237
           F        G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++
Sbjct: 178 FNAFCRGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R   AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP--------RAAPS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L
Sbjct: 286 TPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYEL 345

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 346 ITRLTSRVAMKY 357


>gi|313109932|ref|ZP_07795860.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 39016]
 gi|310882362|gb|EFQ40956.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 39016]
          Length = 363

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 179/366 (48%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  +EE  +
Sbjct: 8   VDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVACLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           +R     ARI +L G     E  +     L  VI    Q   +   ++ G+  P    L+
Sbjct: 67  VRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAF---LAAGLDIPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG     AL   H       G   L +ISH ACAD+ +  +   QLE F  L+
Sbjct: 124 LDSGMHRLGFD-PAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFLGLL 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
                 + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A++I
Sbjct: 183 D-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGAQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YG      R + I   + GYADGYP T        +P+   G    + 
Sbjct: 242 SLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPRT--------APA---GTPVLVG 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL ++G 
Sbjct: 291 GRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKVGA 350

Query: 364 RYAKFY 369
           R  + +
Sbjct: 351 RVPRAF 356


>gi|396388|gb|AAC43147.1| alanine racemase [Escherichia coli str. K-12 substr. MG1655]
          Length = 358

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 179/372 (48%), Gaps = 36/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +   +  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLREXAPASKMVAVVKANAYGHGLLETARTLPDADA--FXVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS+      V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEGF--------FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
           F T      G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R+  AGE V YGG     RD+ + V A+GY DGY    SG     +P     
Sbjct: 237 LTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYXAAPSG-----TPV---- 287

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L
Sbjct: 288 ---LVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYEL 344

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 345 ITRLTSRVAMKY 356


>gi|218551364|ref|YP_002385156.1| alanine racemase [Escherichia fergusonii ATCC 35469]
 gi|218358906|emb|CAQ91565.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia
           fergusonii ATCC 35469]
 gi|324112309|gb|EGC06287.1| alanine racemase [Escherichia fergusonii B253]
          Length = 359

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 39/374 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLIETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSK-----LMSCGVSHPY 124
           LR       I +L G         F+ + +P IS+   Q   +++     L +  +  P 
Sbjct: 66  LRAGGITQPILLLEGF--------FEADDLPTISAEHLQTAVHNEEQLVALETAELKEPV 117

Query: 125 --ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F    S  K + Q   I+SH A AD+P S     QL+ 
Sbjct: 118 IVWMKLDTGMHRLGVLPEQAEAFYQRLSQCKNVRQPVNIVSHFARADEPQSGATEKQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------GTDKINKSHPMQTV 235
           F T      G + S+A+S GILL P  HF   RPGI LYG      GT   +     Q V
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEDGTTGADFG--CQPV 234

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS  
Sbjct: 235 MSLTSSLIAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYP--------RAAPS-- 284

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y
Sbjct: 285 -GTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAAMTKVSAY 343

Query: 356 DLLVRIGTRYAKFY 369
           +L+ R+ +R A  Y
Sbjct: 344 ELITRLTSRVAMKY 357


>gi|270263327|ref|ZP_06191597.1| hypothetical protein SOD_d03440 [Serratia odorifera 4Rx13]
 gi|270043015|gb|EFA16109.1| hypothetical protein SOD_d03440 [Serratia odorifera 4Rx13]
          Length = 359

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 183/364 (50%), Gaps = 20/364 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +   +  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRQAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G    ++  ++   N+   + S+ QL    +        P  +++D
Sbjct: 66  LRSGGIVKPILLLEGFFCAEDLPVLVANNIETAVHSIEQLEALEQ-TELARPVPVWMKLD 124

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++A  F    S  + + Q   I+SH + AD+P S     Q++ F + +  
Sbjct: 125 TGMHRLGVRPEQAEAFYQRLSACRNVAQPVNIMSHFSRADEPDSDATLKQMQCFESFVRG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILI 245
             G + S+A+S G LL P+ H    RPGI LYG +   D       +Q  +T ++ +I +
Sbjct: 185 KPG-QRSIAASGGTLLWPDAHNDWVRPGIILYGVSPMEDACGSQFDLQPAMTLKSNLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE V YGG      D+ + V A+GY DGYP +        +PS   G   ++ G 
Sbjct: 244 RDHKAGEAVGYGGTWVSEGDTRLGVVAMGYGDGYPRS--------APS---GTPVWLNGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VP++G+++MDM   D+  + + +VGD + ++G  + ++ +A  +G + Y+L+ ++  R 
Sbjct: 293 EVPVVGRVSMDMISVDLGPNATDKVGDEVVLWGKALPVERIAACTGISAYELITKLTQRV 352

Query: 366 AKFY 369
           A  Y
Sbjct: 353 AMEY 356


>gi|37528186|ref|NP_931531.1| alanine racemase [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36787623|emb|CAE16730.1| alanine racemase, biosynthetic [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 359

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 182/366 (49%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +   AVVK NAYG G  + A  L +A    F V  + E + 
Sbjct: 8   IDRRALRHNLQRVREIAPKSNLIAVVKANAYGHGLLETAHTLDDADC--FGVARIGEALT 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     + ++   N I  V+ SV QL     L    +SHP    ++
Sbjct: 66  LRHGGIVKPILLLEGCFDAADLLVLVANHIETVVHSVEQL---QALEQAKLSHPVKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++A +F    S  K + Q   I+SH   AD+P+      Q+  F+   
Sbjct: 123 LDSGMHRLGVRPEDAEEFYQRLSRCKNVQQPVNIVSHFGRADEPTVDTTCQQIACFQAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           +   G E S+ +S GILL P  H    RPG+ +YG +   DK      +   +T ++ +I
Sbjct: 183 ADKPG-EKSIDASGGILLWPEVHQDWVRPGLMMYGVSPLSDKTAVDFNLIPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G    I 
Sbjct: 242 AVRKHKAGESVGYGGIWVSERDTYLGVVAIGYGDGYPRS--------APS---GTPIHIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +VGD + ++G  + ++ VA  +G   Y+L+ ++ +
Sbjct: 291 GREVPIAGRVSMDMISVDLGPEATDKVGDEVVLWGDVLPVERVAKHTGIITYELVTKLTS 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RVVMEY 356


>gi|26250840|ref|NP_756880.1| alanine racemase [Escherichia coli CFT073]
 gi|110644389|ref|YP_672119.1| alanine racemase [Escherichia coli 536]
 gi|191171958|ref|ZP_03033503.1| alanine racemase [Escherichia coli F11]
 gi|227886936|ref|ZP_04004741.1| alanine racemase [Escherichia coli 83972]
 gi|300980476|ref|ZP_07175023.1| alanine racemase [Escherichia coli MS 200-1]
 gi|300992970|ref|ZP_07180125.1| alanine racemase [Escherichia coli MS 45-1]
 gi|301047007|ref|ZP_07194116.1| alanine racemase [Escherichia coli MS 185-1]
 gi|33301027|sp|Q8FB20|ALR1_ECOL6 RecName: Full=Alanine racemase, biosynthetic
 gi|26111271|gb|AAN83454.1|AE016770_254 Alanine racemase, biosynthetic [Escherichia coli CFT073]
 gi|110345981|gb|ABG72218.1| alanine racemase, biosynthetic [Escherichia coli 536]
 gi|190907723|gb|EDV67317.1| alanine racemase [Escherichia coli F11]
 gi|227836077|gb|EEJ46543.1| alanine racemase [Escherichia coli 83972]
 gi|300301052|gb|EFJ57437.1| alanine racemase [Escherichia coli MS 185-1]
 gi|300307778|gb|EFJ62298.1| alanine racemase [Escherichia coli MS 200-1]
 gi|300406744|gb|EFJ90282.1| alanine racemase [Escherichia coli MS 45-1]
 gi|307556202|gb|ADN48977.1| alanine racemase [Escherichia coli ABU 83972]
 gi|315291550|gb|EFU50910.1| alanine racemase [Escherichia coli MS 153-1]
 gi|324014852|gb|EGB84071.1| alanine racemase [Escherichia coli MS 60-1]
          Length = 359

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 182/374 (48%), Gaps = 39/374 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLIETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         F+ + +P IS+      V        L +  +  P 
Sbjct: 66  LRAGGITRPILLLEGF--------FEADDLPTISAEHLHTAVHNEEQLVALENAELKEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F    S  K + Q   I+SH A AD+P S     QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVLPEQAEAFYQRLSQCKNVRQPVNIVSHFARADEPQSGATEKQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------GTDKINKSHPMQTV 235
           F T      G + S+A+S GILL P  HF   RPGI LYG      GT   +     Q V
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEDGTTGADFG--CQPV 234

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS  
Sbjct: 235 MSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP--------RAAPS-- 284

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y
Sbjct: 285 -GTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAY 343

Query: 356 DLLVRIGTRYAKFY 369
           +L+ R+ +R A  Y
Sbjct: 344 ELITRLTSRVAMKY 357


>gi|90414458|ref|ZP_01222434.1| alanine racemase [Photobacterium profundum 3TCK]
 gi|90324463|gb|EAS41022.1| alanine racemase [Photobacterium profundum 3TCK]
          Length = 359

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 186/368 (50%), Gaps = 26/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL +N   ++  + N++  AVVK N YG G   +A +L +A    F V  +EE + 
Sbjct: 8   INTDALTHNIRQLHLQAPNSKLLAVVKANGYGHGLLHVAKSLPDADA--FGVARIEEALT 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +   +  II   N+  V+ S+ QL     L S  + +     L+
Sbjct: 66  LRAGGVVKPILLLEGFYGASDLPIIVTNNIHTVVHSIEQL---EALESAELDNQAVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++  DF         + +    +SH  CADD +S+V + Q+  F +L 
Sbjct: 123 IDTGMHRLGVRPEQLDDFVQRLHACDNVAKPLRYMSHFGCADDLTSNVTNQQINTFLSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT-----DKINKSHPMQTVVTAEAR 241
               G E SLA+S+GIL  P+   +  RPGI +YG +     D+  ++  +Q V+T  + 
Sbjct: 183 EGCSG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFIEPDRSAEAFNLQPVMTLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    GE V YGG     RD+ + V AIGY DGYP T        +P+   G    
Sbjct: 242 LIAVRDVKEGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRT--------APN---GTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VP+ G+++MDM   D+  +   +VGD   ++G  +  + VA   GT  Y+L+ ++
Sbjct: 291 VNGRIVPMAGRVSMDMLTVDLGPNAQDKVGDEAVLWGNGLPAEVVAEHIGTIAYELVTKL 350

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 351 TSRVDMTY 358


>gi|15600123|ref|NP_253617.1| biosynthetic alanine racemase [Pseudomonas aeruginosa PAO1]
 gi|20137487|sp|Q9HUN4|ALR1_PSEAE RecName: Full=Alanine racemase, biosynthetic
 gi|9951209|gb|AAG08315.1|AE004906_3 biosynthetic alanine racemase [Pseudomonas aeruginosa PAO1]
          Length = 358

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 180/367 (49%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  +EE  +
Sbjct: 8   VDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVACLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           +R     ARI +L G     E  +     L  VI    Q   +   ++ G+  P    L+
Sbjct: 67  VRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAF---LAAGLDIPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG     AL   H       G   L +ISH ACAD+ +  +   QLE F  L+
Sbjct: 124 LDSGMHRLGFD-PAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFLGLL 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
                 + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A++I
Sbjct: 183 D-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGAQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YG      R + I   + GYADGYP T     +     V +GG+  I 
Sbjct: 242 SLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPRT-----APAGTPVLVGGRRAI- 295

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL ++  
Sbjct: 296 -----LAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKVTA 350

Query: 364 RYAKFYT 370
           R  + Y+
Sbjct: 351 RVPRRYS 357


>gi|145635716|ref|ZP_01791411.1| alanine racemase [Haemophilus influenzae PittAA]
 gi|145639886|ref|ZP_01795486.1| alanine racemase [Haemophilus influenzae PittII]
 gi|229845613|ref|ZP_04465739.1| alanine racemase [Haemophilus influenzae 6P18H1]
 gi|145267039|gb|EDK07048.1| alanine racemase [Haemophilus influenzae PittAA]
 gi|145270977|gb|EDK10894.1| alanine racemase [Haemophilus influenzae PittII]
 gi|229811480|gb|EEP47183.1| alanine racemase [Haemophilus influenzae 6P18H1]
 gi|309751068|gb|ADO81052.1| Alanine racemase [Haemophilus influenzae R2866]
          Length = 360

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 183/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTL-EQNVDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---DALKRANLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           ++    +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + 
Sbjct: 183 SVTKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V A+GY DGYP      D      ++L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----DVPEGTPIYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       +GD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLIGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|68249839|ref|YP_248951.1| alanine racemase [Haemophilus influenzae 86-028NP]
 gi|148826096|ref|YP_001290849.1| alanine racemase [Haemophilus influenzae PittEE]
 gi|229847109|ref|ZP_04467214.1| alanine racemase [Haemophilus influenzae 7P49H1]
 gi|68058038|gb|AAX88291.1| alanine racemase [Haemophilus influenzae 86-028NP]
 gi|148716256|gb|ABQ98466.1| alanine racemase [Haemophilus influenzae PittEE]
 gi|229809938|gb|EEP45659.1| alanine racemase [Haemophilus influenzae 7P49H1]
          Length = 360

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 182/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTL-EQNVDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---EALKRSNLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           +     +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + 
Sbjct: 183 SATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V A+GY DGYP      D      V+L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----DVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|254282682|ref|ZP_04957650.1| alanine racemase [gamma proteobacterium NOR51-B]
 gi|219678885|gb|EED35234.1| alanine racemase [gamma proteobacterium NOR51-B]
          Length = 351

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 183/363 (50%), Gaps = 21/363 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           L IDL AL +N     +L+  +R  AV+K +AYG G    A AL   G+ D F V  VEE
Sbjct: 7   LSIDLDALVHNAKLCQSLAAPSRFMAVIKADAYGHGAVPCARALR--GIADAFAVALVEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            V+LR       I V+ G+    + + I +  L PVI S  QL + S         P  L
Sbjct: 65  AVELRAAGISEPILVMEGLFSADDMRHIVEHKLWPVIHSRHQLDYLSPEHH---GTPLWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG +RLG+  ++               ++L+ SHL  A++P + ++  Q++ ++ + 
Sbjct: 122 KIDTGMHRLGIEPEKLPQMLSRIRELGFSDITLM-SHLGDAENPDTALSQRQIDAWQNIT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +  +  SL +S+ +           R G  LYGG    N   P++ V++ ++ ++ +R
Sbjct: 181 GQHSSV-TSLCNSAAVAQRSVPESSWVRAGYMLYGGQTTPNPL-PLKPVMSFQSAVMALR 238

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE V YGG+    R S+IA  A GYADGYP +     +E    V +GG+      +
Sbjct: 239 TIAAGETVGYGGRWCAQRPSVIATVAAGYADGYPRS-----AEDGTPVNIGGE------I 287

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P++G+++MDM   D+TD   +++G    ++G    +DDVA  +GT  Y+L  R+  R  
Sbjct: 288 APLVGRVSMDMVTVDVTDLPGVKIGTPALLWGASPTIDDVANRAGTIGYELTARMPPRTP 347

Query: 367 KFY 369
           + Y
Sbjct: 348 RTY 350


>gi|49086668|gb|AAT51370.1| PA4930 [synthetic construct]
          Length = 359

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 180/367 (49%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  +EE  +
Sbjct: 8   VDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVACLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           +R     ARI +L G     E  +     L  VI    Q   +   ++ G+  P    L+
Sbjct: 67  VRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAF---LAAGLDIPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG     AL   H       G   L +ISH ACAD+ +  +   QLE F  L+
Sbjct: 124 LDSGMHRLGFD-PAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFLGLL 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
                 + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A++I
Sbjct: 183 D-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGAQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YG      R + I   + GYADGYP T     +     V +GG+  I 
Sbjct: 242 SLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPRT-----APAGTPVLVGGRRAI- 295

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL ++  
Sbjct: 296 -----LAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKVTA 350

Query: 364 RYAKFYT 370
           R  + Y+
Sbjct: 351 RVPRRYS 357


>gi|145637837|ref|ZP_01793485.1| alanine racemase [Haemophilus influenzae PittHH]
 gi|145268980|gb|EDK08935.1| alanine racemase [Haemophilus influenzae PittHH]
          Length = 360

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 182/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTL-EQNVDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---DALKRANLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           +     +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + 
Sbjct: 183 SATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V A+GY DGYP      D      V+L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----DVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|294634343|ref|ZP_06712881.1| alanine racemase [Edwardsiella tarda ATCC 23685]
 gi|291092240|gb|EFE24801.1| alanine racemase [Edwardsiella tarda ATCC 23685]
          Length = 363

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 182/368 (49%), Gaps = 26/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N+  + + + ++R  AVVK NAYG G  + A  L+ A    + V  + E + 
Sbjct: 8   IDRRALRHNFQQIRSFAPHSRLIAVVKANAYGHGLLETANTLHQADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  ++   N+   + S  QL     L    +  P    ++
Sbjct: 66  LRSGGIVKPILLLEGFFSASDLPVLVANNIETAVHSEEQL---QALEQAQLERPVKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F         + Q    +SH + AD+P       Q+  F   +
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLCACPNVAQPVNFMSHFSRADEPQCGRTEAQMACFDAFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAEAR 241
               G + S+A+S GILL P  H  + RPGI LYG + + + +     + +Q  +T ++ 
Sbjct: 183 QGKPG-DQSIAASGGILLWPQSHRDMVRPGIILYGVSPQADLALAADHYGLQPAMTLQSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG      D+ + V AIGY DGYP +        +PS   G    
Sbjct: 242 LIAVREHKAGEPVGYGGTWVAECDTRLGVVAIGYGDGYPRS--------APS---GTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+       VGD + ++GP + ++ VA  +G + Y+L+ ++
Sbjct: 291 INGREVPIVGRVSMDMISVDLGPQAQDRVGDKVIMWGPGLPVEKVAACTGISAYELITKL 350

Query: 362 GTRYAKFY 369
            +R A  Y
Sbjct: 351 TSRVAMEY 358


>gi|145631023|ref|ZP_01786799.1| alanine racemase [Haemophilus influenzae R3021]
 gi|144983490|gb|EDJ90966.1| alanine racemase [Haemophilus influenzae R3021]
          Length = 360

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 182/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTL-EQNVDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---DALKRANLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           +     +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + 
Sbjct: 183 SATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V A+GY DGYP      D      V+L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----DVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|58039646|ref|YP_191610.1| alanine racemase [Gluconobacter oxydans 621H]
 gi|58002060|gb|AAW60954.1| Alanine racemase [Gluconobacter oxydans 621H]
          Length = 257

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/232 (38%), Positives = 129/232 (55%), Gaps = 12/232 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL +DL A+ +N+  +  L+  A  AAVVK +AYGLG E++AP L NAG  DFFV  V+E
Sbjct: 18  RLTVDLDAIASNYRYLQTLASGASCAAVVKADAYGLGIERVAPVLENAGATDFFVAHVDE 77

Query: 68  GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YA 125
           G++LR + + +ARI VL+G  PG         L PV++S+ Q+  +    S   + P  A
Sbjct: 78  GIRLRSVVSEKARITVLHGPRPGASADCVRYGLRPVLNSLEQIALWRDEGSRTDALPEAA 137

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-----QLSLIISHLACADDPSSHVNSVQLE 180
           LQVD+G +R GLS     D    +     G     ++ L++SHLACAD P    N  Q +
Sbjct: 138 LQVDSGMSRFGLS-----DADLETLQADKGLVDGLKVGLVMSHLACADTPDHPANQAQKD 192

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           R   + +       SL++SSGI LG +YH  + RPG +LYG        +P+
Sbjct: 193 RLLQMSARLPPAPLSLSASSGIFLGTDYHLDVVRPGAALYGIAPNRTGPNPL 244


>gi|254238354|ref|ZP_04931677.1| biosynthetic alanine racemase [Pseudomonas aeruginosa C3719]
 gi|126170285|gb|EAZ55796.1| biosynthetic alanine racemase [Pseudomonas aeruginosa C3719]
          Length = 358

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 179/367 (48%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  +EE  +
Sbjct: 8   VDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVACLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           +R     ARI +L G     E  +     L  VI    Q   +   ++ G+  P    L+
Sbjct: 67  VRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAF---LAAGLDIPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG     AL   H       G   L +ISH ACAD+ +  +   QLE F  L+
Sbjct: 124 LDSGMHRLGFD-PAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFLGLL 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
                 + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A++I
Sbjct: 183 D-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGAQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YG      R + I   + GYADGYP T        +P+   G    + 
Sbjct: 242 SLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPRT--------APA---GTPVLVG 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL ++  
Sbjct: 291 GRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKVTA 350

Query: 364 RYAKFYT 370
           R  + Y+
Sbjct: 351 RVPRHYS 357


>gi|51894072|ref|YP_076763.1| alanine racemase [Symbiobacterium thermophilum IAM 14863]
 gi|81826014|sp|Q67K79|ALR_SYMTH RecName: Full=Alanine racemase
 gi|51857761|dbj|BAD41919.1| alanine racemase [Symbiobacterium thermophilum IAM 14863]
          Length = 377

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 173/372 (46%), Gaps = 23/372 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL A++ N  ++  +S   R  AVVK N YG G   +A A   AG     V SVEEGV
Sbjct: 12  EVDLNAVRANIRALKRISKAPRLMAVVKANGYGHGAVPVATAAIEAGADWLGVASVEEGV 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR +   A I VL  + PGQ + +    L + +           +    G      L+V
Sbjct: 72  TLRRHGISAPILVLGYVSPGQAEAVLTEGLRVALFDGELGQALNREGRRLGRWARVHLKV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF--RTLI 186
           DTG  R+GL   E              ++  + +HLA AD+P +    +QLER+      
Sbjct: 132 DTGMGRIGLQPAEVGRLGRELARLDHVEVEGVFTHLATADEPGNPYTRLQLERYEAALAE 191

Query: 187 SHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVVTAEAR 241
               G+  ++   A+S+G++L P  H+ + R GI++ G       + P++    +T + R
Sbjct: 192 LAAAGVRPAIRHAANSAGLMLHPEAHYDMVRSGIAVVGLPPAPGVAWPVKLAPALTWKTR 251

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           + L++   AG  +SYG      R   IA   +GYADGYP  LS              +  
Sbjct: 252 VGLVKWLEAGHSISYGCTYTTARREQIATLPVGYADGYPRRLSNR-----------AQVL 300

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTTNYDL 357
           I+G   P++G +TMD  M  + D L + VGD + +     G +I   ++A  + T +Y++
Sbjct: 301 IRGRRCPVVGVVTMDQMMVRVPDDLPVRVGDEVVLIGRQGGEEITATELAGLADTISYEI 360

Query: 358 LVRIGTRYAKFY 369
           +  I  R  +FY
Sbjct: 361 VCGISRRVPRFY 372


>gi|260914151|ref|ZP_05920624.1| alanine racemase [Pasteurella dagmatis ATCC 43325]
 gi|260631784|gb|EEX49962.1| alanine racemase [Pasteurella dagmatis ATCC 43325]
          Length = 360

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 185/367 (50%), Gaps = 24/367 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK+N  ++   + NA+  AVVK NAYG G   ++ A+    V  F V  +EE +
Sbjct: 9   KISSVALKHNIQTIKQKAPNAKIIAVVKANAYGHGVVFVSEAVEKM-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I+   N+  V+ ++ QL     L S  + +P    L
Sbjct: 68  SLRSNGITKPILLLEGFFCTQDLPILAVNNIQTVVHNIEQL---EALQSSDLPNPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG+ L +  +F     N      ++  +SH + AD+  S   ++QL RF   
Sbjct: 125 KIDTGMHRLGVDLSQVDEFYQALKNTPNVDPNIGFVSHFSRADEIHSDYTALQLNRFLQA 184

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARI 242
            +  KG E S+A+S GIL   + H    RPGI +YG    IN   + + +  V+T  + +
Sbjct: 185 TADKKG-ERSIAASGGILFWEDSHLDWIRPGIIMYG-IAPINVPAREYDLTPVMTLTSSL 242

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    GE V YGG     +D+ I V AIGY DGYP  +             G   ++
Sbjct: 243 ISVKAHKKGEPVGYGGVWVSDKDTKIGVVAIGYGDGYPRDIP-----------TGTPVYL 291

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+GK++MDM   D+      +VGD + ++G ++ ++++A  SG  +Y+L+ ++ 
Sbjct: 292 NGRRVPIVGKVSMDMLTVDLGQDSQDKVGDEVILWGKELPIEEIAELSGVISYELITKLT 351

Query: 363 TRYAKFY 369
            R    Y
Sbjct: 352 PRVLTEY 358


>gi|319776471|ref|YP_004138959.1| alanine racemase [Haemophilus influenzae F3047]
 gi|329123976|ref|ZP_08252524.1| alanine racemase [Haemophilus aegyptius ATCC 11116]
 gi|317451062|emb|CBY87295.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus
           influenzae F3047]
 gi|327467720|gb|EGF13215.1| alanine racemase [Haemophilus aegyptius ATCC 11116]
          Length = 360

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 183/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L  + V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---DALKRANLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGIALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQIYRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           +     +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + 
Sbjct: 183 SATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V A+GY DGYP      D      V+L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----DVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|107104029|ref|ZP_01367947.1| hypothetical protein PaerPA_01005102 [Pseudomonas aeruginosa PACS2]
 gi|218894025|ref|YP_002442894.1| biosynthetic alanine racemase [Pseudomonas aeruginosa LESB58]
 gi|254244178|ref|ZP_04937500.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 2192]
 gi|126197556|gb|EAZ61619.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 2192]
 gi|218774253|emb|CAW30070.1| biosynthetic alanine racemase [Pseudomonas aeruginosa LESB58]
          Length = 358

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 179/367 (48%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  +EE  +
Sbjct: 8   VDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVACLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           +R     ARI +L G     E  +     L  VI    Q   +   ++ G+  P    L+
Sbjct: 67  VRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAF---LAAGLDIPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG     AL   H       G   L +ISH ACAD+ +  +   QLE F  L+
Sbjct: 124 LDSGMHRLGFD-PAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFLGLL 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
                 + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A++I
Sbjct: 183 D-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGAQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YG      R + I   + GYADGYP T        +P+   G    + 
Sbjct: 242 SLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPRT--------APA---GTPVLVG 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL ++  
Sbjct: 291 GRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKVTA 350

Query: 364 RYAKFYT 370
           R  + Y+
Sbjct: 351 RVPRRYS 357


>gi|5690427|gb|AAD47082.1|AF165882_1 biosynthetic alanine racemase [Pseudomonas aeruginosa PAO1]
          Length = 358

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 180/367 (49%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  +EE  +
Sbjct: 8   VDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVACLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           +R     ARI +L G     E  +     L  VI    Q   +   ++ G+  P    L+
Sbjct: 67  VRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAF---LAAGLDIPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG     AL   H       G   L +ISH ACAD+ +  +   QLE F  L+
Sbjct: 124 LDSGMHRLGFD-PAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFLGLL 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
                 + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A++I
Sbjct: 183 D-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGAQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YG      R + I   + GYADGYP T     +     V +GG+  + 
Sbjct: 242 SLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPRT-----APAGTPVLVGGRRAL- 295

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL ++  
Sbjct: 296 -----LAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKVTA 350

Query: 364 RYAKFYT 370
           R  + Y+
Sbjct: 351 RVPRRYS 357


>gi|332163185|ref|YP_004299762.1| alanine racemase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318603930|emb|CBY25428.1| alanine racemase, biosynthetic [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667415|gb|ADZ44059.1| alanine racemase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861935|emb|CBX72104.1| alanine racemase [Yersinia enterocolitica W22703]
          Length = 359

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 186/364 (51%), Gaps = 20/364 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRIAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G    ++  I   N I   + S+ QL            H + +++D
Sbjct: 66  LRSGGIVKPILLLEGFFAAEDLPILAANCIETAVHSIEQLEALEVAELSAPIHVW-MKLD 124

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++A  F    S  K + Q   I+SH + AD+P       QL+ F T  + 
Sbjct: 125 TGMHRLGVRPEQAEAFYQRLSACKNVIQPVNIMSHFSRADEPQVDTTRQQLDCFDTFAAD 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARIILI 245
             G + S+A+S GILL P  H    RPGI LYG +  D+   SH  ++  +  ++ +I +
Sbjct: 185 KPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFELKPAMALKSSLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G   ++   
Sbjct: 244 REHKAGEPVGYGGTWVSERDTRLGVVAIGYGDGYPRS--------APS---GTPMWLNDR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            V I+G+++MDM   D+  + + +VGD + ++G ++ ++ +A  +G + Y+L+ ++ +R 
Sbjct: 293 EVGIVGRVSMDMISVDLGPNATDKVGDEVLLWGAELPVEKIAACTGISAYELITKLTSRV 352

Query: 366 AKFY 369
           A  Y
Sbjct: 353 AMEY 356


>gi|309973248|gb|ADO96449.1| Alanine racemase [Haemophilus influenzae R2846]
          Length = 360

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 182/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKALNSKIIAVVKANAYGHGVVFVASTL-EQNVDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---EALKRSNLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           +     +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + 
Sbjct: 183 SATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V A+GY DGYP      D      V+L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----DVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|152989346|ref|YP_001350978.1| biosynthetic alanine racemase [Pseudomonas aeruginosa PA7]
 gi|150964504|gb|ABR86529.1| alanine racemase [Pseudomonas aeruginosa PA7]
          Length = 358

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 180/367 (49%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+++N++     +   +  AVVK NAYG G  ++  AL++     F V  +EE  +
Sbjct: 8   VDLSAIRHNYNLAKRCAPQRQAFAVVKANAYGHGAREVVTALHDE-ADGFAVACLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           +R     ARI +L G     E  +     L  VI  + Q   +   ++ G+  P    L+
Sbjct: 67  VRALHADARILLLEGCFEASEYALAGQLRLDLVIQGLEQGEAF---LAAGLDTPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG     AL   H       G   L +ISH ACAD+ +  +   Q+E F  L+
Sbjct: 124 LDSGMHRLGFD-PAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQVECFLGLL 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
                 + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  AR+I
Sbjct: 183 D-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGATPFADLSAAELGLKPAMSLTARLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG      R + I   + GYADGYP         ++P+   G    + 
Sbjct: 242 SVREVAAGESVGYGAGWVAERPTRIGTVSCGYADGYP--------RNAPA---GTPVLVG 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    + G+++MDM   D+     + VGD ++++G  + +D+VA A G+  Y+LL ++  
Sbjct: 291 GRRTRLAGRVSMDMLTVDLGGLPDVRVGDPVELWGAQLAVDEVACACGSIGYELLSKVTA 350

Query: 364 RYAKFYT 370
           R  + Y 
Sbjct: 351 RVPRRYA 357


>gi|296126374|ref|YP_003633626.1| alanine racemase [Brachyspira murdochii DSM 12563]
 gi|296018190|gb|ADG71427.1| alanine racemase [Brachyspira murdochii DSM 12563]
          Length = 369

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 190/371 (51%), Gaps = 23/371 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL+ LKNN   +++++   +   +VK NAYG G  +I+ A    G     V +VEEG+
Sbjct: 8   EVDLSILKNNIEIIHSIANGVKLLNIVKANAYGHGLVEISQASEQFGADALGVATVEEGI 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQV 128
           K+R    +  I VL+     + +++   +LIP+IS+   L +Y + L   G S    ++V
Sbjct: 68  KIRESGVKLPIIVLFQHFKQEAELVCRYDLIPIISNDECLEYYDRYLKKYGGSLKLYIKV 127

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLERFRTL 185
           DTG NR+G   ++ LD      +     +  I +H A A   DD S      Q++ F  +
Sbjct: 128 DTGLNRMGARAEDVLDLAKKVLSYSTLSIEGINTHYAAADMQDDYSREFTQRQIDIFNNV 187

Query: 186 ISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           I+  K  GI       A+S+ +L   N +F + R GI LYG T        ++ ++  ++
Sbjct: 188 ITTLKSNGIVINNVHTANSAALLSYKNTYFDMVRAGIILYGYTYDEAYDLGIKPILNLKS 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++LIRK   GE +SYG   +  RD+ IAV  IGYADG    LS     ++  V + GK 
Sbjct: 248 KVVLIRKIKKGESISYGMTWRADRDTNIAVVPIGYADGVSRKLS-----NNWEVKINGKY 302

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS--GTTNYDLL 358
           +      P+ G++ MD  + +I +   I+  D + IFG D +L+   LA    + ++++L
Sbjct: 303 Y------PLRGRVCMDSIIIEIGND-DIKTEDDVLIFGNDKRLNANTLAKRIDSISHEVL 355

Query: 359 VRIGTRYAKFY 369
           V IG R  + Y
Sbjct: 356 VNIGDRVTRVY 366


>gi|209522716|ref|ZP_03271274.1| alanine racemase [Arthrospira maxima CS-328]
 gi|209496765|gb|EDZ97062.1| alanine racemase [Arthrospira maxima CS-328]
          Length = 399

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 177/380 (46%), Gaps = 31/380 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  A+ NN   + + LS   R  AV+K +AYG G   +A  +   GV DF V ++ E
Sbjct: 28  VEVDRWAIANNVKQIRHLLSPETRLMAVIKADAYGHGAVSVAKIVSEIGVDDFAVATIPE 87

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           G++LR    Q  I VL  +H   E K I    L P + +  Q L F   L S   S P  
Sbjct: 88  GIELRRLGIQQPILVLGAVHTSDEIKAIAHWGLQPTLCTPTQALLFSETLQSIKRSLPVQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L +DTG +RLG   ++AL+F          ++S I SH A AD     +   Q  RF+ +
Sbjct: 148 LNIDTGMSRLGTWWEQALEFVQLVRGLPNLEISGIYSHFATADIRDRTIMDQQHWRFQQV 207

Query: 186 ISHYKGIEA-----------SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
           ++  +                LA+S+  L  P  H+ + R G+SLYG      +     +
Sbjct: 208 LAQIQEHTTLFSIPTVKPCLHLANSAATLTDPALHYDMVRVGLSLYGLYPAPHLRSVVNL 267

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  ++  AR+  I+   AG  VSYG +    + + IAV  IGYADG P  LS        
Sbjct: 268 QPAMSIRARVTQIKTIEAGCGVSYGYKFIAKQKTPIAVVGIGYADGVPRHLSN------- 320

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 K  I+G  VP +G ITMD  M D+T    ++VG+ + + G D    I  DD A 
Sbjct: 321 ----QMKVLIRGQFVPQIGAITMDQLMLDVTAIPDLQVGEVVTLLGSDRHHSISADDWAE 376

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
             GT ++++L     R  + 
Sbjct: 377 QLGTISWEILCGFKHRLPRI 396


>gi|54310410|ref|YP_131430.1| alanine racemase [Photobacterium profundum SS9]
 gi|123614432|sp|Q3V7I5|ALR_PHOPR RecName: Full=Alanine racemase
 gi|46914851|emb|CAG21628.1| putative alanine racemase, biosynthetic [Photobacterium profundum
           SS9]
          Length = 359

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 186/368 (50%), Gaps = 26/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL +N   ++  + N++  AVVK N YG G   +A +L +A    F V  +EE + 
Sbjct: 8   INTDALTHNIRQLHLQAPNSKLLAVVKANGYGHGLLHVAKSLPDADA--FGVARIEEALT 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +   +  +I   N+  V+ S+ QL     L S  + +     L+
Sbjct: 66  LRAGGVVKPILLLEGFYGASDLPVIVTNNIHTVVHSIEQL---EALESAELDNQAVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++  D          + +    +SH  CADD +S+V + Q+  F +L 
Sbjct: 123 IDTGMHRLGVRPEQLDDVVQRLHACDNVAKPLRYMSHFGCADDLASNVTNQQINTFLSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT-----DKINKSHPMQTVVTAEAR 241
              +G E SLA+S+GIL  P+   +  RPGI +YG +     D+  ++  MQ V+T  + 
Sbjct: 183 EGCRG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFTEPDRSAEAFNMQPVMTLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    GE V YGG     RD+ + V AIGY DGYP T        +P+   G    
Sbjct: 242 LIAVRDVKEGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRT--------APN---GTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VP+ G+++MDM   D+  +   +VGD   ++G  +  + VA   GT  Y+L+ ++
Sbjct: 291 VNGRIVPMAGRVSMDMLTVDLGPNAQDKVGDEAILWGNGLPAEVVAEHIGTIAYELVTKL 350

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 351 TSRVDMTY 358


>gi|75906615|ref|YP_320911.1| alanine racemase [Anabaena variabilis ATCC 29413]
 gi|75700340|gb|ABA20016.1| alanine racemase [Anabaena variabilis ATCC 29413]
          Length = 395

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 178/378 (47%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL +N   +   LS   +  AVVK +AYG G   +A     AG     V +V E
Sbjct: 28  VEIDLEALSHNVQQLKQFLSPRTQLMAVVKADAYGHGAVTVAQTALQAGASCLGVATVPE 87

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---- 122
           G++LR    QA I +L   H P Q + I    L P I S  Q   +S  +   + H    
Sbjct: 88  GIQLREAGMQAPILILGATHTPEQIQAIAQWQLQPTIGSPKQALIFSNTLET-IQHDSPV 146

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
           P  +++DTG +RLG + Q+A +F      ++L  L++  + SHLA AD P   +   Q  
Sbjct: 147 PVHIKLDTGMSRLGTNWQQAGEFVQ--LVERLPHLNIASVYSHLATADSPDPGIMEEQYR 204

Query: 181 RFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
           RF   I+  K +        LA+S+  L  P  H+ + R G+++YG      + K   ++
Sbjct: 205 RFEEAIAQIKALSIKIPCLHLANSAATLADPRLHYDMVRVGLAVYGLYPAPHLQKKISLK 264

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +AR+  ++   AG  VSYG Q     +  +AV  IGYADG P  LS         
Sbjct: 265 PVIQVQARVTHVKTIAAGTGVSYGHQFIAPHEMRLAVVGIGYADGIPRNLSN-------- 316

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I+G  VP +G ITMD  M D++    ++ G+ + + G      I  DD A  
Sbjct: 317 ---KMQVLIRGQRVPQIGAITMDQLMIDVSALPDLQEGEIVTLLGKQGKEKITADDWAEE 373

Query: 350 SGTTNYDLLVRIGTRYAK 367
             T ++++L     R  +
Sbjct: 374 LNTISWEILCGFKHRLPR 391


>gi|301170339|emb|CBW29945.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus
           influenzae 10810]
          Length = 360

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 183/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L  + V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---DALKRANLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    K+L Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGVALDE-VDYFYQEL-KELPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           +     +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + 
Sbjct: 183 SATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V A+GY DGYP      D      V+L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----DVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|157145451|ref|YP_001452770.1| alanine racemase [Citrobacter koseri ATCC BAA-895]
 gi|157082656|gb|ABV12334.1| hypothetical protein CKO_01194 [Citrobacter koseri ATCC BAA-895]
          Length = 356

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 188/369 (50%), Gaps = 42/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEGV 69
           +DL A+K N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++EE +
Sbjct: 9   LDLQAMKQNLGIVRQAAPDARVWSVVKANAYGHGIERIWTAL---GATDGFAMLNLEEAI 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR    +  I +L G     E  I+DT  L   I S  QL     L +  ++ P    L
Sbjct: 66  TLRERGWKGPILMLEGFFHADELAIYDTYRLTTCIHSNWQLKV---LQNARLNAPLDVYL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +V++G NRLG  L E +            +G+++L+ SH A A+ P        +++  T
Sbjct: 123 KVNSGMNRLGF-LPERVQTVWQQLRALPNVGEMTLM-SHFADAEHPEG------IDQAMT 174

Query: 185 LISHY-KGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTV 235
            I+H  +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++ V
Sbjct: 175 KIAHATEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  ++II ++   AG+ V YGG+   T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSQIIGVQTLKAGDRVGYGGRYTATQEQRIGIVAAGYADGYP--------RHAPN-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGVRTGTVGTVSMDMLAVDLTPCPQAGIGTSVELWGKEIKIDDVASAAGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALAPR 350


>gi|288941546|ref|YP_003443786.1| alanine racemase [Allochromatium vinosum DSM 180]
 gi|288896918|gb|ADC62754.1| alanine racemase [Allochromatium vinosum DSM 180]
          Length = 367

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 185/382 (48%), Gaps = 34/382 (8%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            S   LR +I L A+++N+    +L+  +R  AVVK NAYG G   +A  L +     F 
Sbjct: 3   RSARPLRARIHLDAIRHNYRRAKSLAPRSRALAVVKANAYGHGAIAVARTLADE-ADGFA 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFY-----SKL 115
           V  VEE ++LR    Q  + +L G+  P +  ++    L  V+    QL +      S+ 
Sbjct: 62  VACVEEALELRESGIQEPMLLLEGVFSPDEIALVERAGLAMVVHCREQLDWVLNAHPSRR 121

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHV 174
           + C +      ++DTG +R+G SL E  +     +    +G+  + ++H A AD+     
Sbjct: 122 LDCWI------KLDTGMHRVGFSLSEFAEVNARLAACPHVGE-RVAMTHFARADEIDHPY 174

Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKIN 227
            S Q+E F   ++  + I  SLA+S+ +   P  H   TRPGI LYG       G++   
Sbjct: 175 TSAQIEAFEQALNGAR-IGRSLANSAAVFAWPQAHGDWTRPGIMLYGVSPFAGTGSNANM 233

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            +  ++  +T E+ +I +R   AGE V YGG+    R + + VAAIGYADGYP       
Sbjct: 234 DAGDLRPAMTLESALIAVRDLDAGEPVGYGGRFVCERPTRVGVAAIGYADGYP-----RH 288

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
           +     + +GG+      +  ++G+++MDM   D+T       GD ++++G  +    VA
Sbjct: 289 ARDGTPIAVGGR------LTRLIGRVSMDMITLDLTGFDEARPGDPVELWGRTVPAGAVA 342

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
            AS T  Y L   IG R    Y
Sbjct: 343 EASDTIAYQLFTGIGRRVPLMY 364


>gi|262275138|ref|ZP_06052949.1| alanine racemase biosynthetic [Grimontia hollisae CIP 101886]
 gi|262221701|gb|EEY73015.1| alanine racemase biosynthetic [Grimontia hollisae CIP 101886]
          Length = 358

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 176/364 (48%), Gaps = 19/364 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I + AL +N   + A++ N+RT A +K N YG G   +A AL +     F V  +EE V 
Sbjct: 8   IHMAALNHNIEIIRAMAPNSRTWAAIKANGYGHGLLPVAKAL-STQTDGFGVARLEEAVS 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L G     +    +  NL   +  + QL    K       H + L++D
Sbjct: 67  LRKGGIENPILLLEGFFSWADLPALEAHNLQTAVHCIEQLEALEKATLRQPLHVW-LKID 125

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  +   +F    + +  + +    +SH  CAD+    V   Q+  F  L   
Sbjct: 126 TGMHRLGVRPEHVSEFIERLNASPNVAKPLNFMSHFGCADELDKPVTPQQIALFNELTVS 185

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILI 245
             G + SLA+SSG L+ P+ HF   RPGISLYG +    +  +   ++  +T  + +I +
Sbjct: 186 QPGYK-SLAASSGSLMWPDSHFDFVRPGISLYGISPVAARCGQDFGLKPAMTMTSSLIAV 244

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+   GE V Y G+    RD+ + V AIGY DGYP          +P    G    + G 
Sbjct: 245 REVKKGEAVGYSGRWVAERDTQLGVVAIGYGDGYPRV--------APD---GTPVLVNGR 293

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VP+ G+++MDM   D+    +  VGD + ++G  + ++++A   GT  Y+L+  + +R 
Sbjct: 294 RVPLAGRVSMDMITVDLGPDSTDSVGDEVIMWGEGLPVEEIARHVGTIGYELVTNLTSRV 353

Query: 366 AKFY 369
              Y
Sbjct: 354 HIVY 357


>gi|37523387|ref|NP_926764.1| alanine racemase [Gloeobacter violaceus PCC 7421]
 gi|35214391|dbj|BAC91759.1| alanine racemase [Gloeobacter violaceus PCC 7421]
          Length = 381

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 173/364 (47%), Gaps = 26/364 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL++N   +   L  + R  AVVK +AYG G      A   AG     V ++EE
Sbjct: 12  VEIDLDALRHNVQQIRQRLRSHCRVMAVVKADAYGHGALSAGRAALEAGAACLGVATLEE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G +LR       I VL  IH G E   +    L P + +  Q+   ++ +S    HP  L
Sbjct: 72  GAQLRESGLGCPIVVLGPIHTGAEVAAVEHWRLEPTLCTPRQVLVCAEHLS--APHPVHL 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG  RLG   Q+A++F   ++     Q++ + SHLA AD+P S     Q  RF  ++
Sbjct: 130 KIDTGMTRLGAPWQDAVEFVRLAYRLPRLQVASVYSHLATADEPDSAALGEQHRRFERVL 189

Query: 187 SHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
              +  G+      LA+S+  L  P  H+ L R G++LYG     +   +  ++ V+   
Sbjct: 190 GELEAAGVRPECVHLANSAAALGDPGLHYDLVRVGVALYGLYPAPEFYGAAELRPVMQVR 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           AR+  +R+  A   VSYG   +    S +A  AIGYADG P  LSG             +
Sbjct: 250 ARVTQVREVPADTGVSYGHFWRTPTPSRLATVAIGYADGVPRRLSGQL-----------Q 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G   P +G ITMD  + D T   ++E GD + + G D    I   D A   GT  Y
Sbjct: 299 VLVHGRRAPQVGAITMDQIVIDCTHLSAVEEGDVVTLLGRDGNEAIGAADWADPLGTIAY 358

Query: 356 DLLV 359
           ++L 
Sbjct: 359 EILC 362


>gi|332304651|ref|YP_004432502.1| alanine racemase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171980|gb|AEE21234.1| alanine racemase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 375

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 189/383 (49%), Gaps = 35/383 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGN----------ARTAAVVKDNAYGLGCEKIAPALYNAG 56
           + + +DL A+++N++   +L             ++T AV+K +AYG G    A AL +  
Sbjct: 5   ISITVDLNAIRHNFNYAQSLGAKPKNGDSLDNVSQTMAVIKADAYGHGAVATARAL-DGK 63

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL 115
                V+S+EE V LR    +  I +L G     E  ++ D NL  V+ +  Q+    +L
Sbjct: 64  ATLLAVSSIEEAVSLRQNHIKTPILLLEGCFCSSELSVLDDLNLQVVLHNQHQI---EEL 120

Query: 116 MSCGVSHP--YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           ++  +  P    L++DTG +RLG+S  +A        N K  +  ++++H A +D P+  
Sbjct: 121 LNTSLDEPADVWLKIDTGMHRLGISAADANHTYQTLANSKNVRSIVLMTHFAMSDQPNHT 180

Query: 174 VNSVQLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKIN 227
               Q E F  L+         I  S A+S+ ++  P  H    RPGI LYG +  D  N
Sbjct: 181 FFKRQHEDFHNLVKALSTTDQLIPNSAANSAAVMSAPESHGTWNRPGIMLYGISPFDHEN 240

Query: 228 K-SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
             S P+   +   ++II +R+  AGE V YG     T+ S+IA  A GY DGYP T    
Sbjct: 241 TFSAPLIPAMQFHSKIIALRQVNAGESVGYGATWTATQPSIIATVAAGYGDGYPRTAKS- 299

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                     G    I G + P+ G+++MDM   D+T    +++GD ++++G ++ +++V
Sbjct: 300 ----------GTPVMINGQIAPLAGRVSMDMLCVDVTKLNKVKIGDDVELWGKELSVNEV 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + T  Y+L+ R+ TR  + +
Sbjct: 350 AQWADTLGYELVTRMPTRAKRIF 372


>gi|116053079|ref|YP_793398.1| biosynthetic alanine racemase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588300|gb|ABJ14315.1| biosynthetic alanine racemase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 358

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 179/367 (48%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  +EE  +
Sbjct: 8   VDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVACLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           +R     ARI +L G     E  +     L  VI    Q   +   ++ G+  P    L+
Sbjct: 67  VRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAF---LAAGLDIPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG     AL   H       G   L +ISH ACAD+ +  +   QLE F  L+
Sbjct: 124 LDSGMHRLGFD-PVALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFLGLL 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
                 + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A++I
Sbjct: 183 D-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGAQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YG      R + I   + GYADGYP T        +P+   G    + 
Sbjct: 242 SLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPRT--------APA---GTPVLVG 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL ++  
Sbjct: 291 GRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKVTA 350

Query: 364 RYAKFYT 370
           R  + Y+
Sbjct: 351 RVPRRYS 357


>gi|109900323|ref|YP_663578.1| alanine racemase [Pseudoalteromonas atlantica T6c]
 gi|122971491|sp|Q15NL4|ALR_PSEA6 RecName: Full=Alanine racemase
 gi|109702604|gb|ABG42524.1| alanine racemase [Pseudoalteromonas atlantica T6c]
          Length = 375

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 192/387 (49%), Gaps = 43/387 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNA----------RTAAVVKDNAYGLGCEKIAPALYNAG 56
           + + +DL A++ N+   NAL  NA           T AV+K +AYG G    A AL N  
Sbjct: 5   ISITVDLDAIRQNFAYANALGVNALESSINDRQSNTLAVIKADAYGHGAVATARAL-NGQ 63

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKL 115
                V+S+EE V LR +  +  I +L G   P +  ++ + NL  VI +  Q+     L
Sbjct: 64  AALLAVSSIEEAVSLRQHHIKTPILLLEGCFCPSELSVVNELNLQIVIHNQKQI---EDL 120

Query: 116 MSCGVSHPYA--LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPS- 171
           ++  ++ P    L+VDTG +RLG+ + +AL  +T  + +K +  + ++++H A +D P  
Sbjct: 121 LAQVLTKPIKVWLKVDTGMHRLGIPVSDALKAYTQLASSKNVCSV-MLMTHFATSDHPDH 179

Query: 172 ----SHVNSVQ-LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
               S + S+Q L    +    Y G   SLA+S+ +L  P       RPGI LYG     
Sbjct: 180 PLLLSQIQSIQKLAEKVSAEPSYAG--CSLANSAALLATPKSISTWNRPGIMLYG-ISPF 236

Query: 227 NKSH----PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
           N+S     P+   +T  +++I +R+   GE V YG      R S+IA  A GY DGYP T
Sbjct: 237 NQSDINVLPLIPAMTFSSKVIALRRVATGESVGYGAIWTAKRPSIIATVAAGYGDGYPRT 296

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
                         G    + G + P+ G+++MDM   D+T    I  G  ++++G +I 
Sbjct: 297 AKS-----------GTPVMVNGQIAPLAGRVSMDMLCVDVTQLTDISEGSPVELWGKNIP 345

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++DVA  + T  Y+L+ R+ TR  + +
Sbjct: 346 VNDVAAWADTLGYELVTRMPTRAKRVF 372


>gi|145641722|ref|ZP_01797298.1| alanine racemase [Haemophilus influenzae R3021]
 gi|145273536|gb|EDK13406.1| alanine racemase [Haemophilus influenzae 22.4-21]
          Length = 360

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 185/366 (50%), Gaps = 22/366 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  +EE +
Sbjct: 9   KISSHALKKNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTL-EQNVDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR       I +L G    Q+  I   N I  V+ +  QL    +     +   + L++
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRANLPSLIKVW-LKI 126

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFRTL 185
           DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF + 
Sbjct: 127 DTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFLSA 184

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARII 243
               +G E ++A+S GIL  P  H +  RPGI +YG   TD I K   +  V+   + +I
Sbjct: 185 TKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSSLI 243

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R    G+ V YGG     RD+ I V A+GY DGYP  +     E +P V+L G+    
Sbjct: 244 AVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPSNVP----EGTP-VYLNGR---- 294

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++  
Sbjct: 295 --LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKLTP 352

Query: 364 RYAKFY 369
           R    Y
Sbjct: 353 RVITEY 358


>gi|238789907|ref|ZP_04633687.1| Alanine racemase 1 [Yersinia frederiksenii ATCC 33641]
 gi|238721980|gb|EEQ13640.1| Alanine racemase 1 [Yersinia frederiksenii ATCC 33641]
          Length = 359

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 187/366 (51%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHP--YALQ 127
           LR       I +L G    ++  I   N I   + S+ QL     L +  +S P    ++
Sbjct: 66  LRSGGIVKPILLLEGFFTAEDLPILVANRIETAVHSIEQL---EALEAATLSAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F    S  + + Q   I+SH + AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSACRNVIQPVNIMSHFSRADEPKVETTRQQLDCFDTFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI LYG +  D+   SH  +   +  ++ +I
Sbjct: 183 KDKPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYGSHFNLLPAMELKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G   +I 
Sbjct: 242 AVREHKAGEPVGYGGTWVSKRDTRLGVVAIGYGDGYPRS--------APS---GTPMWIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+    + +VGD + ++G ++ ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GREVGIVGRVSMDMISVDLGPDATDKVGDEVLLWGAELPVEKIAARTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|148826764|ref|YP_001291517.1| alanine racemase [Haemophilus influenzae PittGG]
 gi|148718006|gb|ABQ99133.1| alanine racemase [Haemophilus influenzae PittGG]
          Length = 360

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 182/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTL-EQNVDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    Q+  I   N I  V+ +  QL     L    +  P    L
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQL---EALKRSNLPSPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183
           ++DTG +RLG++L E +D+ +    KKL Q+      +SH + AD+  S    +Q+ RF 
Sbjct: 125 KIDTGMHRLGVALDE-VDYFYQEL-KKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
           +     +G E ++A+S GIL  P  H +  RPGI +YG   T+ I K   +  V+   + 
Sbjct: 183 SATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTNTIGKEFGLTPVMNLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    G+ V YGG     RD+ I V A+GY DGYP      D      V+L G+  
Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----DVPEGTPVYLNGR-- 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++
Sbjct: 295 ----LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 351 TPRVITEY 358


>gi|261341531|ref|ZP_05969389.1| alanine racemase [Enterobacter cancerogenus ATCC 35316]
 gi|288316330|gb|EFC55268.1| alanine racemase [Enterobacter cancerogenus ATCC 35316]
          Length = 359

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 180/367 (49%), Gaps = 25/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +   I + +L   + +  QL     L +  +S P    ++
Sbjct: 66  LRAGGITQPILLLEGFFEAADLPTIAEQHLHTSVHNEEQLV---ALETAELSEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEDAETFYQRLCQCKNVRQPVNIVSHFARADEPECGATEQQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G   S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +
Sbjct: 183 EGKPGAR-SIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLVSNL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWTSERDTRLGVVAMGYGDGYPRA--------APS---GTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  V ++G++ MDM   D+      + GD + ++G  + ++ +A  +G + Y+L+ R+ 
Sbjct: 291 NGREVKLVGRVAMDMICVDLGPDAQDKAGDDVVMWGEGLPVERIAEMTGVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|145298771|ref|YP_001141612.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851543|gb|ABO89864.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 367

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 179/361 (49%), Gaps = 24/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ AL +N+  +   + +++  AV+K NAYG G  ++A  L  A    + V  +EE + 
Sbjct: 8   IDVDALHHNFAVVRRHAPHSKIIAVLKANAYGHGLLQVANTLSQADA--YGVARIEEALV 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I VL G    +   ++   +L   I +  QL     L    +  P    L+
Sbjct: 66  LRANAITKPILVLGGFFSAEALPLLAAHDLQTTIHTWDQLAL---LEQADLPTPITVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG NRLGL  Q+   F     N K + Q   +++H + +D+  S     Q+E F  L 
Sbjct: 123 LDTGMNRLGLRAQDIPAFVERLANCKNVVQPFHLMTHFSQSDEQDSQATPQQIEEFNALT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +  +G E ++A+S+GIL  P+      RPGI LYG +    ++   H ++ V+T ++++I
Sbjct: 183 ARMQG-ERAMANSAGILAWPDSRSDWIRPGIMLYGASPFGGQLASDHDLRPVMTLKSQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            IR    GE V YGG      D+ + V A+GY DGYP          +P    G    I 
Sbjct: 242 AIRPCEQGESVGYGGHWVAHHDTTLGVVAVGYGDGYP--------RMAPQ---GTPVLIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G+++MDM   D+      + GD + ++G  + ++ VA   GT  Y+LL R+ +
Sbjct: 291 GRRVPIVGRVSMDMITVDLGPGAGDKTGDEVILWGDGLPVEQVAEKIGTIPYELLTRLTS 350

Query: 364 R 364
           R
Sbjct: 351 R 351


>gi|260767143|ref|ZP_05876087.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972]
 gi|260617864|gb|EEX43039.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972]
 gi|315181333|gb|ADT88247.1| alanine racemase, biosynthetic [Vibrio furnissii NCTC 11218]
          Length = 364

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 183/370 (49%), Gaps = 32/370 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + N++  AVVK N YG G   +A   +  G   F V  +EE ++
Sbjct: 11  INLDALRHNLQQIKQQAPNSKLMAVVKANGYGHGLRHVAK--HAVGADAFGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +  G   ++   N+  V+    QL     L S  +  P    L+
Sbjct: 69  LRASGVVKPILLLEGFYSQGDLPVLVTNNIQTVLHCEEQL---QALESAELETPVVVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFTH-----NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +D+G +RLG+  ++   F       N+  K L      +SH  CAD+      + Q+E F
Sbjct: 126 IDSGMHRLGVRPEQYAQFVARLQACNNVAKPL----RYMSHFGCADELDKSTTTEQIELF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAE 239
            +L +  +G E S+A+S+G+L  P    +  RPGI +YG +   +K  +    Q V+T +
Sbjct: 182 LSLTNGCEG-ERSMAASAGLLAWPQSQMEWVRPGIIMYGVSPFAEKNAQQLGYQPVMTLK 240

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I +R   AGE V YG      RD+ I V AIGY DGYP T        +P+   G  
Sbjct: 241 SHLIAVRDVKAGESVGYGATWVSERDTKIGVIAIGYGDGYPRT--------APN---GTP 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +VP+ G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ 
Sbjct: 290 VVVNGRVVPLAGRVSMDMLTVDLGPDARDNVGDEAILWGSELPVEEVASHIGTLGYELVT 349

Query: 360 RIGTRYAKFY 369
           ++ +R    Y
Sbjct: 350 KLTSRVDMSY 359


>gi|312881940|ref|ZP_07741697.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370376|gb|EFP97871.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 360

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 181/366 (49%), Gaps = 22/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL ALK+N   +   + N++  AVVK N+YG G   +A   + +    F V  +EE ++
Sbjct: 8   IDLEALKHNLGRVKQQAPNSKVMAVVKANSYGHGLHYVAQ--HASAADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQV 128
           LR       I +L G +  ++  +  TN I  +    +  +   L    + +P    L++
Sbjct: 66  LRASGVVKPILLLEGFYSSRDLPVLVTNSIHTVVHCEEQLY--DLEKASLENPVVVWLKI 123

Query: 129 DTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G +RLG+  +    F       K + +    +SH  CAD+    +   Q+E F +L  
Sbjct: 124 DSGMHRLGVRPEHFEHFVERLEACKNVAKPLRYMSHFGCADELDKPITQKQIELFLSLTK 183

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIIL 244
              G E SLA+S+G+L  P+   +  RPGI LYG +   NK+      + V+T ++ +I 
Sbjct: 184 GCLG-ERSLANSAGVLAWPDSQLEWVRPGIILYGVSPLPNKTATDLGFKPVMTLKSHLIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R   +GE V YGG     RD+ + V AIGY DGYP          +P+   G    + G
Sbjct: 243 VRTVKSGESVGYGGNWTSDRDTKVGVIAIGYGDGYP--------RMAPN---GTPVLVNG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             VP+ G+++MDM   D+      +VGD   ++G  + +++VA   GT  Y+L+ ++ +R
Sbjct: 292 RKVPMAGRVSMDMLTVDLGPDAKDKVGDEAILWGNGLDVEEVAHHIGTIAYELVTKLTSR 351

Query: 365 YAKFYT 370
               Y+
Sbjct: 352 VDMEYS 357


>gi|212633597|ref|YP_002310122.1| alanine racemase [Shewanella piezotolerans WP3]
 gi|254802381|sp|B8CIQ9|ALR_SHEPW RecName: Full=Alanine racemase
 gi|212555081|gb|ACJ27535.1| Alanine racemase [Shewanella piezotolerans WP3]
          Length = 358

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 187/369 (50%), Gaps = 26/369 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I   ALK+N   ++ L+ +++  AVVK N YG G   +A  L NA    F +  +
Sbjct: 4   FPRAEISRKALKHNLARLHELAPSSKVMAVVKANGYGHGLLNVAQCLDNA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR     A++ +L G    G    + + ++  V+    QL     L S  ++ P 
Sbjct: 62  EEALALRTGGVTAKLLLLEGFFRIGDLTTLVEHDIETVVHHESQLEM---LESINLTKPV 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              L+VD+G +RLG S  +  D T+     N  + +   +++H ACAD+PS+   + Q  
Sbjct: 119 TVWLKVDSGMHRLGFSPAQ-FDATYQRLMANDNVAKPIHLMTHFACADEPSNPSTAEQQR 177

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
            F TLI    G + +LA+S+G L          RPGI+LYG +     +   H +   + 
Sbjct: 178 VFDTLIKGLPG-DRTLANSAGALFWQQSQADWIRPGIALYGVSPVFGDLGAKHGLMPAMD 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +++I IR+  AGE   YG      +D+ + V AIGY DGYP         ++P   LG
Sbjct: 237 LVSQLIAIREHKAGESAGYGSYWTAEKDTNLGVVAIGYGDGYP--------RNAP---LG 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G +VPI+G+++MDM   D+    + +VGD   ++G ++ +++VA   GT  Y+L
Sbjct: 286 TPVLVNGRIVPIVGRVSMDMLTVDLGIDANDKVGDLAVLWGKELPVEEVAEHIGTIAYEL 345

Query: 358 LVRIGTRYA 366
           + ++  R A
Sbjct: 346 VTKLTPRVA 354


>gi|220931017|ref|YP_002507925.1| alanine racemase [Halothermothrix orenii H 168]
 gi|254802366|sp|B8D0W1|ALR_HALOH RecName: Full=Alanine racemase
 gi|219992327|gb|ACL68930.1| alanine racemase [Halothermothrix orenii H 168]
          Length = 379

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 183/379 (48%), Gaps = 36/379 (9%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL+ L+ N++ +  + G N +  +VVK +AYG G   +A  L  AG Q   V   EEG
Sbjct: 12  EIDLSCLQFNFNQVKEILGSNVKIMSVVKADAYGHGVIPVAKTLVEAGTQRLAVAIPEEG 71

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
           V+LR       I VL  + P Q +++F  +LIP +         ++L +   V     ++
Sbjct: 72  VELREAGLSVPIQVLGEVLPSQYELLFKYDLIPTVGREETALSLNRLAAKYNVVKKVHIK 131

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLERF 182
           VDTG  R+G+  +EA+ F      KK+  LS I     ++H A AD+        Q ++F
Sbjct: 132 VDTGMGRIGVRPREAVGFV-----KKVNSLSNIKIEGLMTHFASADERDKSYTYEQWDKF 186

Query: 183 RTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQT 234
           + ++     +   +     ++S+ I+    +   + RPGI LYG     D IN    ++ 
Sbjct: 187 KQVLDGLNKLRIDIPIKHSSNSAAIIDFKKFGLDMVRPGIMLYGLKPSRDLINNID-LKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T + RI+ +++   G  +SYG      R S IA   +GYADGYP  LS          
Sbjct: 246 VLTWKTRIVYLKEVPPGTGISYGTTYVTNRKSKIATLPVGYADGYPRILSN--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G+  ++G   PI G++ MD  M D+T+   + VGD + + G      I   D+A  +
Sbjct: 297 --QGQVLVRGRKAPIRGRVCMDQIMIDVTEIPDVRVGDEVVLIGEQGTQKISATDIAEKA 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY+++  I  R  + Y
Sbjct: 355 DTINYEIVCGISQRVPREY 373


>gi|296391770|ref|ZP_06881245.1| alanine racemase [Pseudomonas aeruginosa PAb1]
          Length = 358

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 178/367 (48%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  +EE  +
Sbjct: 8   VDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVACLEEAAE 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           +R     ARI +L G     E  +     L  VI    Q   +   ++ G+  P    L+
Sbjct: 67  VRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAF---LAAGLDIPLNVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG     AL   H       G   L +ISH ACAD+ +      QLE F  L+
Sbjct: 124 LDSGMHRLGFD-PVALRAWHARLRNHPGVRELNLISHFACADERNHPFTEQQLESFLGLL 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
                 + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A++I
Sbjct: 183 D-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGAQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YG      R + I   + GYADGYP T        +P+   G    + 
Sbjct: 242 SLREVAVGESVGYGATWIAERPTRIGTVSCGYADGYPRT--------APA---GTPVLVG 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL ++  
Sbjct: 291 GRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGARLSVDEVARACGTLGYELLSKVTA 350

Query: 364 RYAKFYT 370
           R  + Y+
Sbjct: 351 RVPRRYS 357


>gi|170728531|ref|YP_001762557.1| alanine racemase [Shewanella woodyi ATCC 51908]
 gi|254802385|sp|B1KHY4|ALR_SHEWM RecName: Full=Alanine racemase
 gi|169813878|gb|ACA88462.1| alanine racemase [Shewanella woodyi ATCC 51908]
          Length = 358

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 188/368 (51%), Gaps = 24/368 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I   ALKNN   +  ++ N+   AVVK N YG G   +A  L  A    F +  +
Sbjct: 4   FPRAEISAQALKNNLSRLRQIAPNSSVMAVVKANGYGHGLLNVASCLTEA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +A++ +L G     +   + +  +  VI +  QL     L +  +S P 
Sbjct: 62  EEALALRAGGVKAKLVLLEGFFRQVDLTTLVEHGIDTVIHNEVQLDM---LENASLSKPV 118

Query: 125 A--LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L++D+G +RLG + ++ A  +       ++ +   I+SH ACAD+P + +   QL+ 
Sbjct: 119 TVWLKLDSGMHRLGFTPEQFAQVYARLEACPQVAKPINIMSHFACADEPDNPMTQEQLQV 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           F  L  + KG   +LA+S+G L  P+      RPGI+LYG +  I    ++H ++  +  
Sbjct: 179 FEALTKNSKGYR-TLANSAGTLYWPDSQADWIRPGIALYGVSPVIGDLGRNHGLEPAMKL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +++I +R+  AG+ V YG       D+ + V AIGY DGYP         ++P    G 
Sbjct: 238 VSQLIAVREHKAGQPVGYGCFWHAKADTRLGVVAIGYGDGYP--------RNAPE---GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VP++G+++MDM   D+       +GD + ++G ++ +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPVVGRVSMDMLTVDLGIDAKDSIGDDVVLWGKELPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|156932325|ref|YP_001436241.1| alanine racemase [Cronobacter sakazakii ATCC BAA-894]
 gi|156530579|gb|ABU75405.1| hypothetical protein ESA_00100 [Cronobacter sakazakii ATCC BAA-894]
          Length = 359

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 183/374 (48%), Gaps = 39/374 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   VNRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI------SSVPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         F+   +P I      ++V      + L    +S P 
Sbjct: 66  LREGGITQPILLLEGF--------FNAADLPAIAAQRFHTAVHSEEQLAALEQATLSEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  + A  F    +  K + Q   ++SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEAAQAFYDRLAACKNVRQPVNVVSHFARADEPDCGATERQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------QTV 235
           F +  +H K  + S+A+S GIL  P  HF   RPGI LYG +     +HP       Q  
Sbjct: 178 FNSF-THDKPGKRSIAASGGILFWPQSHFDWVRPGIILYGLSPL--DTHPWGAELGFQPA 234

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + +I +R   AGE V YGG     RD+ + V A+GY DGYP          +P+  
Sbjct: 235 MSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRC--------APT-- 284

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI+G++ MDM   D+    + + GD + ++G  + ++ +A A+G + Y
Sbjct: 285 -GTPVLVNGREVPIVGRVAMDMICVDLGPDAAEKAGDTVIMWGEALPVERIAEATGVSAY 343

Query: 356 DLLVRIGTRYAKFY 369
           +L+ R+ +R A  Y
Sbjct: 344 ELVTRLTSRVAMRY 357


>gi|254415385|ref|ZP_05029146.1| alanine racemase [Microcoleus chthonoplastes PCC 7420]
 gi|196177860|gb|EDX72863.1| alanine racemase [Microcoleus chthonoplastes PCC 7420]
          Length = 391

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 180/380 (47%), Gaps = 29/380 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            E   ++ID  AL +N + +  L S   +  AVVK +AYG G   +A      G     V
Sbjct: 22  TERAWVEIDRAALAHNLNQLKQLLSAKTQLMAVVKADAYGHGATMVAQTALATGAYGLCV 81

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGV 120
            +VEEG++LR     A I +L   + P Q + I    L P I +  Q L F   L  C  
Sbjct: 82  ATVEEGIQLREAGIDAPIVILGATNTPEQVRAIAHWYLQPTICTPQQALVFSDTLSRCQT 141

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178
                L +DTG +RLG+S Q+A +F      ++L  L L  + SHLA AD P   V  +Q
Sbjct: 142 PLSVHLNIDTGMSRLGMSWQQATEFVQ--LVQRLPHLKLASVYSHLATADSPDPTVMRLQ 199

Query: 179 LERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
            +RF   I+  H   I      LA+S+  L  P  H+   R G++LYG      ++    
Sbjct: 200 HQRFEAAIAQLHAANIVPPCLHLANSAATLTDPALHYDWVRVGLALYGLYPAPHLHPKVN 259

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  + R+  ++   AG  VSYG   +  +   +AV  IGYADG P  LS   +   
Sbjct: 260 LKPVMQVKTRVTQVKTIPAGTGVSYGYTFRTQKQLRLAVVGIGYADGVPRNLSNKMT--- 316

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                   G I+G  V  +G ITMD  M D+++   ++VG+ + + G D    I  DD A
Sbjct: 317 --------GLIRGQRVSQIGAITMDQLMLDVSNIPDLQVGEIVTLIGRDGDRQISADDWA 368

Query: 348 LASGTTNYDLLVRIGTRYAK 367
           ++  T ++++L     R  +
Sbjct: 369 ISLNTISWEILCGFKHRLPR 388


>gi|308051015|ref|YP_003914581.1| alanine racemase [Ferrimonas balearica DSM 9799]
 gi|307633205|gb|ADN77507.1| alanine racemase [Ferrimonas balearica DSM 9799]
          Length = 358

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 195/372 (52%), Gaps = 39/372 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I  +AL +N   + AL+ N++  AVVK NAYG G  ++A   + + V  F +  +EE +
Sbjct: 8   EIRRSALNHNLQRLRALAPNSKLMAVVKANAYGHGLIRLAS--WMSDVDGFGLARIEEAL 65

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR    QAR+ +L G+   ++ +      L  VI    Q+     L    +S P    L
Sbjct: 66  ALRESGSQARLVLLEGVFSAEDLEQAAQHELDVVIHDAEQVRL---LEHTPLSQPLTIWL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLE 180
           ++DTG +RLG++ ++      ++  ++L Q   +      ++H + AD+  +     Q++
Sbjct: 123 KIDTGMHRLGVTAEQ-----FSALYQRLCQCDNVRTPPNLMTHFSVADELENPETVRQIQ 177

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVT 237
           RF  L  +  G E +L++S+G L  P+ H    RPG++LYG    I    +   ++ V+T
Sbjct: 178 RFNQLAQNLPG-EKALSNSAGTLSWPSAHGDWVRPGLALYGVNPMIGGRAEQFDLKPVMT 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             ++++ +R+  AGE V YG   + +RD+ IAV A+GY DGYP         H+ S   G
Sbjct: 237 MRSKVLAVRELKAGEPVGYGQTWRSSRDTRIAVIAMGYGDGYP--------RHAVS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               I G   P+ G+I+MDM   ++ ++  ++VGD + ++G  + ++++A  +GT  Y+L
Sbjct: 286 TPVLINGQRYPLAGRISMDMLTVEVGEA-PVQVGDDVVLWGDGLPVEEIAECAGTIPYEL 344

Query: 358 LV----RIGTRY 365
           L     R+  RY
Sbjct: 345 LCSTTARVQYRY 356


>gi|332288773|ref|YP_004419625.1| alanine racemase [Gallibacterium anatis UMN179]
 gi|330431669|gb|AEC16728.1| alanine racemase [Gallibacterium anatis UMN179]
          Length = 357

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 185/361 (51%), Gaps = 23/361 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK+N   +++L+ N++  AVVK NAYG G E ++  + +  V  F V  + E +
Sbjct: 7   KISSLALKHNIEKIHSLAPNSKIIAVVKANAYGHGVEFVSQTVQD-NVDCFGVARLGEAL 65

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YAL 126
           +LR       I +L G     +  I+   NL  V+    QL     L++  + +P    +
Sbjct: 66  RLRSNGITKPILLLEGFFSASDLPILSVNNLETVVHCDEQL---EALLAAKLPNPINVWI 122

Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG+ L E   +    S ++ + Q+  I SH + AD+  S     QL+RF T 
Sbjct: 123 KIDTGMHRLGVQLDEVDRYYQALSASQNVNQIRFI-SHFSRADELDSDYTLKQLDRFLTA 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARII 243
            +   G E S+A+S GIL   + H    RPGI +YG       + ++ +  V+T  + +I
Sbjct: 182 CAGKVG-EKSIAASGGILFWKDSHLDWIRPGIIMYGISANSTPSSAYDLIPVMTLTSSLI 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R    GE V YGG+    +D+ I V AIGY DGYP             V  G   +I 
Sbjct: 241 AVRNHKKGEPVGYGGRWVSEKDTKIGVVAIGYGDGYPR-----------DVPTGTPVYIN 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+GK++MDM   D+      +VGD + ++G ++ ++++A   G  +Y+L+ ++  
Sbjct: 290 GRRVPIVGKVSMDMLTVDLGADAQDKVGDEVILWGKELPIEEIAEIIGVISYELVTKLTP 349

Query: 364 R 364
           R
Sbjct: 350 R 350


>gi|296119282|ref|ZP_06837850.1| alanine racemase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967674|gb|EFG80931.1| alanine racemase [Corynebacterium ammoniagenes DSM 20306]
          Length = 366

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 179/372 (48%), Gaps = 22/372 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            L  +I+L A+ +N H +  L G + R   VVK +AYG G EK+AP +  AG       +
Sbjct: 3   LLSTRINLDAISHNVHKLKELVGPDVRLMCVVKADAYGHGVEKVAPVMLKAGADVLGCAT 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           V+E V LR     A + V +   P Q+  + D     ++  VP L     L+   V    
Sbjct: 63  VDEAVALRSMGIDAPL-VAWMWEPEQD--LSDALSSNIVIGVPSLQHAQVLVDIEVPVKV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           A++V+TG +R G+   +  +      +    +++ ++SHLACAD+P +    VQ E FR 
Sbjct: 120 AIKVETGMHRNGVDRAQWAEVFALLNDAPHIEVTGLMSHLACADEPDNPHTDVQAEEFRA 179

Query: 185 LISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            I+  +  G+E     LA+S   L  P+ HF   R G++ YG        H +Q  +T  
Sbjct: 180 AIAQAREAGLECPINHLANSPATLTRPDLHFDQVRVGLACYGLEPVAGLDHELQPAMTWA 239

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A II ++    GE   YG       D  +AV  +GYADG P ++ G     S  V +GGK
Sbjct: 240 ANIINVKPIKKGESSCYGLTWTAPADGYLAVLPVGYADGLPRSIQG-----SLQVTIGGK 294

Query: 300 GFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357
            +      P +G+++MD  + D+ D+   +   D   IFG       ++A A+GT NY++
Sbjct: 295 SY------PHVGRVSMDQIVIDLGDNPFGVRADDEAIIFGEGGHSATELADAAGTINYEI 348

Query: 358 LVRIGTRYAKFY 369
           + R   R  + Y
Sbjct: 349 ICRPTGRTKRIY 360


>gi|78185553|ref|YP_377987.1| alanine racemase [Synechococcus sp. CC9902]
 gi|78169847|gb|ABB26944.1| alanine racemase [Synechococcus sp. CC9902]
          Length = 375

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 172/342 (50%), Gaps = 22/342 (6%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++   A+K N  ++   L+      AVVK + YG G   +A A  + G     V +++E
Sbjct: 12  VEVSPAAIKANASALCQHLTPGTELMAVVKADGYGHGAVSVANAALDGGAASLGVATLQE 71

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR    +A I +L  +  P   +   +  L+P +SS+        L    G      
Sbjct: 72  GLELRRAGLKAPILLLSNLCDPEDLRTCLEWQLMPTLSSLADAKLCHALAEDSGRRFKVQ 131

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++DTG +RLG +L +  + T    + K  +L  I SHLACADD S+ V   Q +RF+++
Sbjct: 132 LKIDTGMSRLGCALDDGAETTQAIQHLKNLELKGIYSHLACADDRSTTVTQQQRQRFQSV 191

Query: 186 ISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
           I        G+   LA+S+G LL PN H+ L R G++LYG    D +    P+++ ++  
Sbjct: 192 IETLPQRGVGLCRHLANSAGTLLEPNLHYDLVRVGLALYGHAPADHLRDIVPLRSALSVR 251

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVFLGG 298
           A++ LIR+  AG  VSYG Q        +AV AIGYADG   +LSG +D  H        
Sbjct: 252 AKVTLIREIKAGTGVSYGHQYISPNARRLAVVAIGYADGVLRSLSGQIDVLH-------- 303

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
               +   +P +G ITMD  + D TD+  +  G  + + G D
Sbjct: 304 ----RDKRLPQVGAITMDQLLIDATDATDLHPGSIVTLLGRD 341


>gi|197334235|ref|YP_002155060.1| alanine racemase [Vibrio fischeri MJ11]
 gi|197315725|gb|ACH65172.1| alanine racemase [Vibrio fischeri MJ11]
          Length = 357

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 180/370 (48%), Gaps = 28/370 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +ID++AL +N   +   + +++  AVVK N YG G   IA      G   F V  +EE +
Sbjct: 7   QIDMSALAHNLQKIKQQAPSSKLLAVVKANGYGHGLLNIAKG--AQGADAFGVARIEEAL 64

Query: 70  KLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
           +LR       I +L G +  G   I+   N+   I    QL     L S  +  P    L
Sbjct: 65  QLRAGGIVKPILLLEGFYSAGDLPILVTNNIQTAIHCKEQL---EALESTDLEFPVVAWL 121

Query: 127 QVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +VD+G +RLG+     QE +D  H    K + +    +SH  CAD+  S   + Q++ F 
Sbjct: 122 KVDSGMHRLGIRPEEFQEYVDRLHAC--KNVAKPLRYMSHFGCADELDSSTTTEQIDTFM 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEA 240
           +L    +G E SLA+S+G+L  P+      RPGI +YG +   ++  +       +T  +
Sbjct: 180 SLTKGCQG-ERSLAASAGLLAWPDSRLDWVRPGIIMYGVSPFSEQSAQELGYLPTMTLTS 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R   AGE V YG      RD+ I V AIGY DGYP T        +P+   G   
Sbjct: 239 HLIAVRDVKAGESVGYGAMWTSERDTKIGVIAIGYGDGYPRT--------APN---GTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  VPI G+++MDM   D+      +VGD   ++G D+  ++VA   GT  Y+L+ +
Sbjct: 288 LVNGRKVPIAGRVSMDMLTVDLGPEAQDKVGDEAILWGRDLPSEEVAEHIGTIAYELVTK 347

Query: 361 IGTRYAKFYT 370
           + +R    YT
Sbjct: 348 LTSRVQMQYT 357


>gi|153209215|ref|ZP_01947281.1| alanine racemase [Coxiella burnetii 'MSU Goat Q177']
 gi|212218349|ref|YP_002305136.1| alanine racemase, biosynthetic [Coxiella burnetii CbuK_Q154]
 gi|226711036|sp|B6J6U2|ALR_COXB1 RecName: Full=Alanine racemase
 gi|120575470|gb|EAX32094.1| alanine racemase [Coxiella burnetii 'MSU Goat Q177']
 gi|212012611|gb|ACJ19991.1| alanine racemase, biosynthetic [Coxiella burnetii CbuK_Q154]
          Length = 364

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 187/370 (50%), Gaps = 37/370 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I++TALK+N   + AL+  +   A++K N YG G  ++A AL +A    F V  ++E + 
Sbjct: 8   INVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVACIDEALT 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    ++ I V+ G +   E   F  + L  VI    Q++   K  +   S    L++D
Sbjct: 66  LREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEK-TNLTSSLSVWLKID 124

Query: 130 TGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           TG NRLG S++++        T +S  K +G    +++HLA AD+ +     +Q++RF +
Sbjct: 125 TGMNRLGFSVEQSPAVYNQLKTSSSIQKPIG----LMTHLADADNENKTFTELQIKRFFS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----------DKINKSHPMQT 234
           +     G   S+ +S+G    PN    L RPGI LYG +          +KI K    + 
Sbjct: 181 VTEKMIG-PKSIVNSAGFFAYPNALVDLIRPGIILYGISPFGINYNSFKEKIEKK--FRP 237

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A+II I+     + V YG       D  IA+ +IGY DGYP         H+PS 
Sbjct: 238 VMTLSAKIIAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYP--------RHAPS- 288

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G + P++G+++MDM   D+    + +VGD + ++G  + ++ +A  +GT  
Sbjct: 289 --GTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIA 346

Query: 355 YDLLVRIGTR 364
           Y+LL +I  R
Sbjct: 347 YELLCKITQR 356


>gi|197286571|ref|YP_002152443.1| alanine racemase [Proteus mirabilis HI4320]
 gi|227357646|ref|ZP_03841999.1| alanine racemase (biosynthetic) [Proteus mirabilis ATCC 29906]
 gi|194684058|emb|CAR45397.1| alanine racemase (biosynthetic) [Proteus mirabilis HI4320]
 gi|227162356|gb|EEI47360.1| alanine racemase (biosynthetic) [Proteus mirabilis ATCC 29906]
          Length = 363

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 182/363 (50%), Gaps = 25/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N+  +   + ++   AVVK NAYG G  + A  L +     F V  + E + 
Sbjct: 8   IDRRALRHNFQHVRDYAPHSHLIAVVKANAYGHGLLETAYTLMD-DADCFGVARIGEALT 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  I   N I  V+ S  QL     L +  +  P    ++
Sbjct: 67  LRSGGIVKPILLLEGFFDAVDLPILVVNHIETVVHSEEQL---EALENADLEEPVKVWMK 123

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185
           +DTG +RLG+  +EA  F       K + Q   ++SH + AD+P    V   Q++ F+  
Sbjct: 124 LDTGMHRLGVRPEEAEAFYQRLCACKNVQQPVNLVSHFSRADEPDIPEVTQNQIQLFQAF 183

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEAR 241
           I    G + S+A+S+GIL  P  H+Q  RPGI  YG    G ++  K   +   +T +  
Sbjct: 184 IQDKAG-DKSIAASAGILFWPQVHYQWVRPGIITYGISPTGDNRTGKDFGLTPAMTLKTS 242

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +RK  AGE V YGG     +D+ + V AIGY DGYP +        +PS   G   +
Sbjct: 243 LIAVRKHKAGEPVGYGGTWVSEKDTYLGVIAIGYGDGYPRS--------APS---GTPVW 291

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+   L   VGD   ++G  + ++++A  SG + Y+L+ ++
Sbjct: 292 INGRKVPIVGRVSMDMISVDLGSELIDRVGDEAILWGDVLPVEEIAKYSGISAYELITKL 351

Query: 362 GTR 364
            +R
Sbjct: 352 TSR 354


>gi|148243246|ref|YP_001228403.1| alanine racemase [Synechococcus sp. RCC307]
 gi|147851556|emb|CAK29050.1| Alanine racemase [Synechococcus sp. RCC307]
          Length = 395

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 171/341 (50%), Gaps = 24/341 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID  A++ N   +  +LS      AVVK + YG G   +A A  + G   F V ++ E
Sbjct: 25  LEIDRDAIRYNTAQLKGSLSPGCALMAVVKADGYGHGAVTVAEAALDGGASSFGVATLAE 84

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           G++LR    +A I VL  +   +E +      L P ISS+ Q    S +   G     A 
Sbjct: 85  GIELRQAGIEAPILVLGNLQQPEEFRCCLHWQLSPTISSLRQGLIGSNVGVAGGKPLLAH 144

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           L++DTG  RLG+  Q+          ++L  LS+  + SHLA AD+P   +N+ Q ERF 
Sbjct: 145 LKLDTGMARLGIDWQQGPKLLEEL--QQLDGLSIAGVYSHLADADNPDGLLNATQQERFE 202

Query: 184 TLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVT 237
            ++  +  +E       LA+S+G L  P  H+ + R G+SLYG +   + K  P++  ++
Sbjct: 203 AVLRRFHELELKPGLRHLANSAGTLSSPELHYDMVRVGLSLYGHSPAAHLKQLPLRPAMS 262

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A++ L+R   AG  VSYG Q   TR S +AV  IGYADG    LSG            
Sbjct: 263 VHAKVTLLRDVPAGAGVSYGHQFHTTRPSRLAVLGIGYADGVSRRLSGQM---------- 312

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            +   +G  +P +G ITMD  + D TD   +++GD + + G
Sbjct: 313 -EVLAEGRRLPQVGAITMDQIVIDATDLPELDIGDSVTLLG 352


>gi|295095419|emb|CBK84509.1| alanine racemase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 359

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 181/370 (48%), Gaps = 31/370 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +   I D +L   + +  QL   + L +  +S P    ++
Sbjct: 66  LRAGGITQPILLLEGFFEASDLPTIADQHLHTAVHNEEQL---AALETAELSEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A  F    S  K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPESAEAFYQRLSQCKNVRQPVNIVSHFARADEPECGATEQQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------HPMQTVVTAE 239
               G+  S+A+S GILL P  HF   RPGI LYG +   NK         P+ ++V+  
Sbjct: 183 EGKPGMR-SIAASGGILLWPQSHFDWARPGIILYGVSPLENKPWGPDFGFKPVMSLVS-- 239

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            ++I +R+  AGE V YGG      D+ + V A+GY DGYP          +P+   G  
Sbjct: 240 -KLIAVREHKAGEPVGYGGTWTSEHDTRLGVVAMGYGDGYPRA--------APT---GTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G  V I+G++ MDM   D+      + GD   ++G  + ++ +A  +  + Y+L+ 
Sbjct: 288 VLVNGREVKIVGRVAMDMICVDLGPDAQDKAGDDAVMWGEGLPVERIAEITKVSAYELIT 347

Query: 360 RIGTRYAKFY 369
           R+ +R A  Y
Sbjct: 348 RLTSRVAMKY 357


>gi|220934104|ref|YP_002513003.1| alanine racemase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254802394|sp|B8GNS7|ALR_THISH RecName: Full=Alanine racemase
 gi|219995414|gb|ACL72016.1| alanine racemase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 361

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 183/370 (49%), Gaps = 24/370 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL++N  +    +  +R  AV+K  AYG G   +A     A    F ++ ++E
Sbjct: 6   RARIDLNALRHNLRTARRAAPRSRVMAVIKAEAYGHGMLAVA-RALAAQADAFAISCIDE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDT--NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
              LR       + VL G     + I      ++ PVI S  QL     L S  +  P  
Sbjct: 65  ARVLREAGVTLPLVVLQGFRDAAQLIEVARLGDVQPVIHSTGQLDV---LESAALPAPLR 121

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLGL   EA    +  +   ++  +  +++HLACAD+P      +QL+ F
Sbjct: 122 VWLKLDTGMHRLGLPPGEAAVLQNRIAALPQVAGVPGLMTHLACADEPERPETGIQLQVF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
               +   G E S+A+S+ +L  P       RPGI LYG +    +  +S  +Q V+T  
Sbjct: 182 DAATADLPG-ERSIANSAAVLRTPAACRDWVRPGIMLYGASPLAGETAQSLDLQPVMTVS 240

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A ++ +++  AG+ V YGG         +AV A+GY DGYP         H+PS   G  
Sbjct: 241 APVVAVKRLAAGDAVGYGGGYVCQSPRTMAVVAMGYGDGYP--------RHAPS---GTP 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T+   +  GD + ++G  + +D++A A+GT +Y+LL 
Sbjct: 290 VRVHGRRCALMGRVSMDMLCVDVTEVPGVAPGDDVTLWGEGLPVDEIAAAAGTISYELLC 349

Query: 360 RIGTRYAKFY 369
            +G R    Y
Sbjct: 350 SVGGRLRLEY 359


>gi|251792441|ref|YP_003007167.1| alanine racemase [Aggregatibacter aphrophilus NJ8700]
 gi|247533834|gb|ACS97080.1| alanine racemase [Aggregatibacter aphrophilus NJ8700]
          Length = 360

 Score =  152 bits (385), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 182/369 (49%), Gaps = 28/369 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK+N  ++   + N++  AVVK NAYG G   ++ A+ +  V  F V  +EE +
Sbjct: 9   KISSVALKHNIQTIKQKAPNSKIIAVVKANAYGHGVVFLSSAVESL-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           KLR       I +L G    ++  I+   N+  V+ S  QL    +  +      + L++
Sbjct: 68  KLRSNGITKPILLLEGFFSSKDLPILAVNNIQTVVHSKEQLEALERAKTPNPVKVW-LKI 126

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLERF 182
           DTG +RLG+ L E       +F +KL  L+ +      +SH + AD+        QL RF
Sbjct: 127 DTGMHRLGVHLDEV-----ETFYQKLKSLTCVDPNIGFVSHFSRADELECGYTEKQLARF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEA 240
                   G E S+++S GIL  P  H    RPGI +YG    +   K + +  V+   +
Sbjct: 182 LQATEGKSG-ERSISASGGILFWPEAHLDWIRPGIIMYGISPNNTAGKEYGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R+   GE V YGG     +D+ I V AIGY DGYP      D      V+L G+ 
Sbjct: 241 SLIAVREHKKGEPVGYGGVWVSDKDTKIGVVAIGYGDGYPR-----DVPEGTPVYLNGR- 294

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
                 VPI+GK++MDM   D+      +VGD + ++G ++ ++++A  +G  +Y+L+ +
Sbjct: 295 -----RVPIVGKVSMDMLTVDLGADSQDKVGDEVILWGKELPIEEIASIAGIISYELITK 349

Query: 361 IGTRYAKFY 369
           +  R    Y
Sbjct: 350 LTPRVLTEY 358


>gi|219871770|ref|YP_002476145.1| alanine racemase [Haemophilus parasuis SH0165]
 gi|219691974|gb|ACL33197.1| alanine racemase [Haemophilus parasuis SH0165]
          Length = 378

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 186/381 (48%), Gaps = 38/381 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+ +AL++N   + +L+ +++  AVVK NAYG G   +   L +  V+ F V  ++E + 
Sbjct: 8   INGSALRHNMRLIKSLAPHSKICAVVKANAYGQGIRAVIKNLEDQ-VEAFGVARIKEALT 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDT------------NLIPVISSVPQLTFYS 113
           ++      +I +L G    +E +      FDT            N+     +  Q  F+ 
Sbjct: 67  IQESGYAGKILLLEGFFDREELLKTLSRRFDTVIHCLEQLELLENVAQEWQAEKQKGFWQ 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           +           L++DTG +RLG+  ++  +F        L +    +SH + AD+    
Sbjct: 127 RKTKIYFPITVWLKIDTGMHRLGIHPEQVAEFYQRLTACPLVECIHFVSHFSRADELDCD 186

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM- 232
               Q+  F T+   YK +E S+++SSGIL     H+   RPGI +YG +     S P+ 
Sbjct: 187 YTEKQIATFETVSQEYK-VERSISASSGILYWKQAHYDWVRPGIIMYGISPH---STPIV 242

Query: 233 ----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               + V+T  + +I +R   AGE V YGG     +D+ I V AIGY DGYP        
Sbjct: 243 DLGFKPVMTLSSSLIAVRSHKAGEPVGYGGSWVSDKDTKIGVVAIGYGDGYP-------- 294

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
            ++P    G   F+ G  VPI+G+++MDM   D+      +VGD ++++G  + +++VA 
Sbjct: 295 RNAPE---GTPVFVNGRKVPIVGRVSMDMMTVDLGIDSQDKVGDEVELWGERLLIEEVAE 351

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A G+ NY+L+ ++  R    Y
Sbjct: 352 AIGSINYELITKLTPRVITEY 372


>gi|317493449|ref|ZP_07951870.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918392|gb|EFV39730.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 359

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 185/366 (50%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N+  +   + ++R  AVVK NAYG G  + A  L +A    + V  + E +K
Sbjct: 8   IDRRALRHNFQQIRQFAPHSRLIAVVKANAYGHGLLETAKTLKDADC--YGVARIGEALK 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  ++   N+   I S  QL     L    +  P    ++
Sbjct: 66  LRSGGIVKPILMLEGFFSADDLPVLVANNIETAIHSEEQL---QALEEAELERPVKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F T  S  + + Q   I+SH + AD+P + +   QL  F    
Sbjct: 123 LDTGMHRLGVRPEQADAFYTRLSNCRNVEQPVNIMSHFSRADEPETGMTEAQLACFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           +   G++ S+A+S GILL    H  + RPGI LYG +   +     + +Q V+T ++ +I
Sbjct: 183 TGKPGLQ-SIAASGGILLWTQSHRDMVRPGIILYGVSPLAEPYADHYGLQPVMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V Y G     RD+ + V AIGY DGYP +        +PS   G    + 
Sbjct: 242 AVREHKAGEPVGYNGTWVSQRDTRLGVVAIGYGDGYPRS--------APS---GTPVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G+++MDM   D+      +VGD + ++  ++ ++ +A  +G + Y+L+ ++  
Sbjct: 291 GREVPIVGRVSMDMISVDLGPEAKDKVGDEVVLWSAELPVEKIAKYTGISAYELITKLTP 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RVTMEY 356


>gi|238798495|ref|ZP_04641974.1| Alanine racemase 1 [Yersinia mollaretii ATCC 43969]
 gi|238717657|gb|EEQ09494.1| Alanine racemase 1 [Yersinia mollaretii ATCC 43969]
          Length = 359

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 184/366 (50%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  AVVK NAYG G  +IA  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLEIAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHP--YALQ 127
           LR       I +L G    ++  I   N I   I S+ QL     L +  +  P    ++
Sbjct: 66  LRSGGIVKPILLLEGFFSAEDLPILAANRIETAIHSIEQL---EALEAADLPAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A  F    S    + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGIRPEHAEAFYQRLSTCPNVIQPVNIMSHFSRADEPQVETTRQQLACFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARII 243
           +   G + S+A+S GILL P  H    RPGI LYG +  D+   SH  +   +  ++ +I
Sbjct: 183 TGKPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPLDEPYASHFDLLPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G   ++ 
Sbjct: 242 AVREHKAGEPVGYGGTWVSERDTRLGVVAIGYGDGYPRS--------APS---GTPMWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+    S +VGD + ++G ++ ++ VA  +G + Y+L+ ++ +
Sbjct: 291 GREVGIVGRVSMDMISVDLGPDASDKVGDEVLLWGAELPVERVAACTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|315634389|ref|ZP_07889676.1| alanine racemase [Aggregatibacter segnis ATCC 33393]
 gi|315476979|gb|EFU67724.1| alanine racemase [Aggregatibacter segnis ATCC 33393]
          Length = 360

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 182/369 (49%), Gaps = 28/369 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK+N  ++   + N++  AVVK NAYG G   ++ A+ +  V  F V  +EE +
Sbjct: 9   KISSVALKHNIQTIKQKAPNSKIIAVVKANAYGHGVVFVSSAVESL-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           KLR       I +L G    ++  I+   N+  V+ S  QL    +  +      + L++
Sbjct: 68  KLRSNGITKPILLLEGFFSSKDLPILAVNNIQTVVHSQEQLEALEEAQTPNPVKVW-LKI 126

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLERF 182
           DTG +RLG+ L E      +SF +KL  L  +      +SH + AD+        QL RF
Sbjct: 127 DTGMHRLGVHLDEV-----DSFYQKLKSLPCVDPNIGFVSHFSRADELECGYTEKQLSRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEA 240
                   G E S+++S GIL   + H    RPGI +YG    +   K + +  V+   +
Sbjct: 182 LQATEGKSG-ERSISASGGILFWQDAHLDWIRPGIIMYGISPNNTAGKEYGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R+   GE V YGG     +D+ I V AIGY DGYP      D      V+L G+ 
Sbjct: 241 SLIAVREHKKGEPVGYGGVWTSEKDTKIGVVAIGYGDGYPR-----DVPQGTPVYLNGR- 294

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
                 VPI+GK++MDM   D+      +VGD + ++G ++ ++++A  +G  +Y+L+ +
Sbjct: 295 -----RVPIVGKVSMDMLTVDLGADSQDKVGDEVILWGKELPIEEIAEITGVISYELITK 349

Query: 361 IGTRYAKFY 369
           +  R    Y
Sbjct: 350 LTPRVLTEY 358


>gi|323703375|ref|ZP_08115024.1| alanine racemase [Desulfotomaculum nigrificans DSM 574]
 gi|323531644|gb|EGB21534.1| alanine racemase [Desulfotomaculum nigrificans DSM 574]
          Length = 372

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 186/388 (47%), Gaps = 41/388 (10%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            E +  +IDL A+++N   +  L G  R   AVVK N YG G   +A A  +AG     V
Sbjct: 2   QEPIWAEIDLGAIRHNIKEVRRLVGPDREIMAVVKANGYGHGAVPVARAALSAGATRLAV 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQ---------EKIIFDTNLIPVISSVPQLTFYS 113
             + E + LR       I VL  I P Q            ++ T+L   IS V Q     
Sbjct: 62  ARLNEAMVLRQAGINVPILVLGFIPPEQLAAALTNHITLTLYRTDLAEEISRVAQ----- 116

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           KL    V H   L+VDTG  RLG   ++ ++           +L  I +H A AD+    
Sbjct: 117 KLGQPAVIH---LKVDTGMGRLGFIPEQGIEEVKRVSQLAGLKLEGIYTHFAAADETDKS 173

Query: 174 VNSVQLERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKI 226
               QL+RF + IS    +G+  +L   A+S+ I+  P  +  + RPGI +YG   ++++
Sbjct: 174 YTRWQLDRFLSFISALEEQGVTFALRHCANSAAIIDHPEAYLDMVRPGIIIYGLYPSEEV 233

Query: 227 NKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           NKS   ++  +  + R+  ++    G  +SYG    + R+++I    +GYADGYP  LS 
Sbjct: 234 NKSRVDLRPAMALKTRVAHLKTVKPGTKISYGCTYTVPRETVIGSLPLGYADGYPRLLSS 293

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
                       G+  I+G   PI+G++ MD +M D+     ++VGD + IFG D    +
Sbjct: 294 R-----------GQVIIRGQRAPIVGRVCMDQSMVDVGHIPGVKVGDEVLIFGRDGADYL 342

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +++VA   GT NY+++  +G R  + Y
Sbjct: 343 PVEEVAAWLGTINYEMVCLVGARVPRIY 370


>gi|33866630|ref|NP_898189.1| alanine racemase [Synechococcus sp. WH 8102]
 gi|33633408|emb|CAE08613.1| putative alanine racemase [Synechococcus sp. WH 8102]
          Length = 376

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 180/372 (48%), Gaps = 31/372 (8%)

Query: 14  TALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72
           TA++ N   +   L    +  AVVK + YG G   +A A    G     V +++EG++LR
Sbjct: 17  TAIEANCRLLCRQLVTGCQLMAVVKADGYGHGAVTVARASLRGGASSLGVATLQEGLELR 76

Query: 73  LYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQVD 129
               +A + +L  +  P   +   +  L+P +SS+ +    + +         P  L++D
Sbjct: 77  DAGIEAPVLILSALPSPEDLRHCLEQRLMPTLSSLDEANTAAAVAAERGNERFPVQLKLD 136

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLIS 187
           TG  RLG   QE      +   + L QL L+   SHLACAD+    +  +QL+RFR++I 
Sbjct: 137 TGMARLGGEWQEGAQLVQSI--RTLPQLELVGLYSHLACADELGDQLTHLQLQRFRSVIE 194

Query: 188 HY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEAR 241
                  G+   LA+S+G L  P  H  + R G++LYG +  D +     +Q  +  +AR
Sbjct: 195 ALPDGGSGLCCHLANSAGTLQDPRLHLDMVRVGLALYGQSPADHLGLDLALQPALAVKAR 254

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVFLGGKG 300
           + LIR+  +G  VSYG +   +R S +AV AIGYADG    LSG +D  H          
Sbjct: 255 VSLIREVPSGSGVSYGHRFVTSRPSRLAVIAIGYADGVVRALSGRIDVLH---------- 304

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
             +G  VP +G ITMD  + D TD   + VGD + + G D    I+  D +   G+  ++
Sbjct: 305 --RGRRVPQVGNITMDQIILDATDVEELTVGDNVTLLGQDGDDCIRPQDWSARCGSIPWE 362

Query: 357 LLVRIGTRYAKF 368
           +L     R  + 
Sbjct: 363 ILCGFKHRLPRV 374


>gi|59710909|ref|YP_203685.1| alanine racemase [Vibrio fischeri ES114]
 gi|59479010|gb|AAW84797.1| alanine racemase 1, PLP-binding, biosynthetic [Vibrio fischeri
           ES114]
          Length = 360

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 180/373 (48%), Gaps = 34/373 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +ID++AL +N   +   + +++  AVVK N YG G   IA      G   F V  +EE +
Sbjct: 10  QIDMSALAHNLQKIKQQAPSSKLLAVVKANGYGHGLLNIAKG--AQGADAFGVARIEEAL 67

Query: 70  KLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
           +LR       I +L G +  G   I+   N+   I    QL     L S  +  P    L
Sbjct: 68  QLRAGGIVKPILLLEGFYSAGDLPILVTNNIQTAIHCKEQL---EALESTDLEFPVVAWL 124

Query: 127 QVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +VD+G +RLG+     QE +D  H    K + +    +SH  CAD+  S   + Q++ F 
Sbjct: 125 KVDSGMHRLGIRPEEFQEYVDRLHAC--KNVAKPLRYMSHFGCADELDSSTTTEQIDTFM 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH------PMQTVVT 237
           +L    +G E SLA+S+G+L  P+      RPGI +YG +    +S       P  T+ +
Sbjct: 183 SLTKGCQG-ERSLAASAGLLAWPDSRLDWVRPGIIMYGVSPFAEQSAQELGYLPTMTLTS 241

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +I +R   AGE V YG      RD+ I V AIGY DGYP T        +P+   G
Sbjct: 242 ---HLIAVRDVKAGESVGYGAIWTSERDTKIGVIAIGYGDGYPRT--------APN---G 287

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI G+++MDM   D+      +VGD   ++G D+  ++VA   GT  Y+L
Sbjct: 288 TPVLVNGRKVPIAGRVSMDMLTVDLGPDAQDKVGDEAILWGRDLPSEEVAEHIGTIAYEL 347

Query: 358 LVRIGTRYAKFYT 370
           + ++ +R    YT
Sbjct: 348 VTKLTSRVQMQYT 360


>gi|186685683|ref|YP_001868879.1| alanine racemase [Nostoc punctiforme PCC 73102]
 gi|186468135|gb|ACC83936.1| alanine racemase [Nostoc punctiforme PCC 73102]
          Length = 395

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/377 (31%), Positives = 181/377 (48%), Gaps = 31/377 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL  N   +   LS   +  AVVK +AYG G   +A  +  +G     V +V E
Sbjct: 28  VEIDLGALSYNVQQLVQFLSPRTQLMAVVKADAYGHGALTVAQTVIQSGASWLGVATVPE 87

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKL---MSCGVSHP 123
            ++LR    +A I +L   H P Q   I   NL P + S  Q   +S +   M+ G   P
Sbjct: 88  AIQLREGGIEAPILILGATHTPEQIHAIAQWNLQPTLCSPKQALVFSNILESMNHGSPVP 147

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLER 181
             +++DTG +RLG + Q+A +F      ++L  LS+  I SHLA ADDP +     Q  R
Sbjct: 148 VHIKLDTGMSRLGTNWQQAGEFVQ--LVQRLPHLSIASIYSHLATADDPDTTAMEEQHRR 205

Query: 182 FRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQT 234
           F   I+  K +E       LA+S+  L  P  H+ + R G+++YG      +  +  ++ 
Sbjct: 206 FEEAIAQIKAMEIEAPCLHLANSAAALTDPALHYDIVRVGLAVYGLYPAPHLQNAIDLKP 265

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  +AR+  ++   AG  VSYG +    R+  +AV  IGYADG P +LS          
Sbjct: 266 VLQLKARVTQVKTIAAGTAVSYGHKFIAPRELRLAVVGIGYADGVPRSLSN--------- 316

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
               +  I G  V  +G ITMD  M D++   +I+ G+ + + G      I  DD A   
Sbjct: 317 --KMQALIHGQRVSQIGTITMDQLMLDVSAIPNIQEGEVVTLLGKQGKEQISADDWAEQL 374

Query: 351 GTTNYDLLVRIGTRYAK 367
            T ++++L     R  +
Sbjct: 375 NTISWEILCGFKHRLPR 391


>gi|161503072|ref|YP_001570184.1| alanine racemase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864419|gb|ABX21042.1| hypothetical protein SARI_01137 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 356

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 181/370 (48%), Gaps = 36/370 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL  +G   F + ++E
Sbjct: 5   IQASLDLQVMKQNLSIVRRAAPEARVWSVVKANAYGHGIERVWNAL--SGTDGFAMLNLE 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P  
Sbjct: 63  EAITLRERGWKGPILMLEGFFHAQDLETYDTYRLTTCIHSNWQL---KALQNARLNAPLD 119

Query: 126 L--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +  +V++G NRLG   + A          + +G+++ I+SH A AD P         E  
Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMT-IMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQT 234
           R +    +GI+   SLA+S+  L  P  H+   RPGI LYG +      D  N    ++ 
Sbjct: 174 RRIALATEGIQCPYSLANSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIANTG--LKP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  + II ++   AGE V YGG     ++  I + A GYADGYP         H+P+ 
Sbjct: 232 VMTLSSEIIGVQTLRAGEKVGYGGCYSAHQEQRIGIVAAGYADGYP--------RHAPT- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  
Sbjct: 283 --GTPVLVDGIRTGTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVAAAAGTLG 340

Query: 355 YDLLVRIGTR 364
           Y+LL  +  R
Sbjct: 341 YELLCAVAPR 350


>gi|260599554|ref|YP_003212125.1| alanine racemase [Cronobacter turicensis z3032]
 gi|260218731|emb|CBA34079.1| Alanine racemase, biosynthetic [Cronobacter turicensis z3032]
          Length = 371

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 183/374 (48%), Gaps = 39/374 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 20  VNRRALRHNLQRLRELAPASQLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 77

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI------SSVPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         F+ + +P I      ++V      + L    +S P 
Sbjct: 78  LREGGITQPILLLEGF--------FNADDLPAIAAQRLHTAVHSEEQLAALEQATLSEPV 129

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  + A  F +  +  K + Q   ++SH A AD+P       QL+ 
Sbjct: 130 TVWMKLDTGMHRLGVRPEAAQAFYNRLAACKNVRQPVNVVSHFARADEPDCGATERQLDI 189

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------QTV 235
           F +  +H K  + S+A+S GIL  P  HF   RPGI LYG +     +HP       Q  
Sbjct: 190 FNSF-THDKPGKRSIAASGGILFWPQSHFDWIRPGIILYGVSPL--DTHPWGAELGFQPA 246

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + +I +R   AGE V YGG     RD+ + V A+GY DGYP          +P+  
Sbjct: 247 MSLISSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRC--------APT-- 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +G + Y
Sbjct: 297 -GTPVLVNGREVPIVGRVAMDMICVDLGPDAPEKAGDTVVMWGEALPVERIAEVTGVSAY 355

Query: 356 DLLVRIGTRYAKFY 369
           +L+ R+ +R A  Y
Sbjct: 356 ELVTRLTSRVAMRY 369


>gi|161829951|ref|YP_001596838.1| alanine racemase [Coxiella burnetii RSA 331]
 gi|189027533|sp|A9ND48|ALR_COXBR RecName: Full=Alanine racemase
 gi|161761818|gb|ABX77460.1| alanine racemase [Coxiella burnetii RSA 331]
          Length = 364

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 187/370 (50%), Gaps = 37/370 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I++TALK+N   + AL+  +   A++K N YG G  ++A AL +A    F V  ++E + 
Sbjct: 8   INVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVACIDEALT 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    ++ I V+ G +   E   F  + L  VI    Q++   K  +   S    L++D
Sbjct: 66  LREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEK-TNLTSSLSVWLKID 124

Query: 130 TGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           TG NRLG S++++        T +S  K +G    +++HLA AD+ +     +Q++RF +
Sbjct: 125 TGMNRLGFSVEQSPAVYNQLKTSSSIQKPIG----LMTHLADADNENKTFTELQIKRFFS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----------DKINKSHPMQT 234
           +     G   S+ +S+G    PN      RPGI LYG +          +KI K    + 
Sbjct: 181 VTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKK--FRP 237

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A+II I+     + V YG     + D  IA+ +IGY DGYP         H+PS 
Sbjct: 238 VMTLSAKIIAIKNRRQNDSVGYGCTWSCSEDMPIAIVSIGYGDGYP--------RHAPS- 288

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G + P++G+++MDM   D+    + +VGD + ++G  + ++ +A  +GT  
Sbjct: 289 --GTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIA 346

Query: 355 YDLLVRIGTR 364
           Y+LL +I  R
Sbjct: 347 YELLCKITQR 356


>gi|113971579|ref|YP_735372.1| alanine racemase [Shewanella sp. MR-4]
 gi|123324703|sp|Q0HF52|ALR_SHESM RecName: Full=Alanine racemase
 gi|113886263|gb|ABI40315.1| alanine racemase [Shewanella sp. MR-4]
          Length = 358

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 185/368 (50%), Gaps = 24/368 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I  +AL+NN   +   +  ++  AVVK N YG G   +A  L+ A    F +  +
Sbjct: 4   FPRAEISSSALQNNLAVLRQQASRSQVMAVVKANGYGHGLLNVANCLHTA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE ++LR    +AR+ +L G     +  ++   ++  V+    Q+     L    +S P 
Sbjct: 62  EEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEM---LEQATLSKPV 118

Query: 125 A--LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG++ ++ A  +   +    + +   +++H ACAD+P +H   VQ++ 
Sbjct: 119 TVWLKVDSGMHRLGVTPEQFAQVYARLTACDNVAKPIHLMTHFACADEPENHYTQVQMQT 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTA 238
           F  L +   G   +LA+S+G L  P       RPGI+LYG    T     +H +   +  
Sbjct: 179 FNQLTADLPGFR-TLANSAGALYWPKSQGDWIRPGIALYGVSPVTGDCGANHGLIPAMNL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +R+I +R   AG+ V YG      +D+ + V AIGY DGYP         ++P    G 
Sbjct: 238 VSRLIAVRDHKAGQPVGYGCYWTAKQDTRLGVVAIGYGDGYP--------RNAPE---GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+    +  VGD   ++G  + +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPIVGRVSMDMLTVDLGADATDLVGDEALLWGAALPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|146291864|ref|YP_001182288.1| alanine racemase [Shewanella putrefaciens CN-32]
 gi|254802380|sp|A4Y3F6|ALR_SHEPC RecName: Full=Alanine racemase
 gi|145563554|gb|ABP74489.1| alanine racemase [Shewanella putrefaciens CN-32]
 gi|319425098|gb|ADV53172.1| alanine racemase [Shewanella putrefaciens 200]
          Length = 358

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 186/368 (50%), Gaps = 24/368 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I  +AL+NN   +   +  ++  AVVK N YG G   +A  L NA    F +  +
Sbjct: 4   FPRAEISSSALQNNLAVLRQQASASQVMAVVKANGYGHGLLNVANCLVNA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE ++LR    +AR+ +L G     +  ++   ++  V+    Q+    ++    ++ P 
Sbjct: 62  EEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQVK---LTKPV 118

Query: 125 A--LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG++ ++ A  +        + +   +++H ACAD+P +H   VQ+  
Sbjct: 119 TVWLKVDSGMHRLGVTPEQFATVYARLMACPNIAKPIHLMTHFACADEPDNHYTDVQMAA 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
           F  L +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +  
Sbjct: 179 FNELTAGLPGFR-TLANSAGALYWPKSQGDWIRPGIALYGVSPVAGDCGTNHGLIPAMNL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +R+I +R   A + V YG      +D+ + V AIGY DGYP         ++P    G 
Sbjct: 238 VSRLIAVRDHKANQPVGYGCYWTAKQDTRLGVVAIGYGDGYP--------RNAPE---GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+    + +VGD + ++G D+ +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPIVGRVSMDMLTVDLGQDATDKVGDDVLLWGQDLPVEEVAERIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|260773674|ref|ZP_05882590.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14]
 gi|260612813|gb|EEX38016.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14]
          Length = 365

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 183/371 (49%), Gaps = 28/371 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +  IDL AL+ N   +   + +++  AVVK N YG G  ++A   Y      F V  ++E
Sbjct: 8   KASIDLQALQYNLQRIKQQAPSSKVMAVVKANGYGHGSCQVA--RYAQDADAFGVARIQE 65

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR       I +L G +  G   ++   N+  V+    QL     L    +  P + 
Sbjct: 66  ALQLRANGIVKPILLLEGFYSAGDLPVLMTNNIQTVVHCEEQL---QALERAQLDTPVSV 122

Query: 126 -LQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L++D+G +RLG+  ++  +F    H   N  + +    +SH  CAD+ +S +   Q+E 
Sbjct: 123 WLKIDSGMHRLGVRPEQHAEFVERLHRCPN--VAKPLRYMSHFGCADELNSPITRQQIEL 180

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
           F +L    KG E SLA+S+G+L  P       RPGI LYG +    +  ++   + V+T 
Sbjct: 181 FLSLTEGCKG-ERSLAASAGLLAWPESQLDWVRPGIILYGVSPFAHQDAQAMGYRPVMTL 239

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A +I +R+  AGE + YG      R++ I V AIGY DGYP T        +P+   G 
Sbjct: 240 TAPLIAVREVKAGESIGYGALWTAQRETKIGVIAIGYGDGYPRT--------APN---GT 288

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +VP+ G+++MDM   D+       VGD   ++G D+ ++ VA   GT  Y+L+
Sbjct: 289 PVLVNGRIVPMAGRVSMDMLTVDLGPESQDNVGDEAILWGQDLPVERVAEHIGTVGYELV 348

Query: 359 VRIGTRYAKFY 369
            ++ +R    Y
Sbjct: 349 TKLTSRVEMHY 359


>gi|261855604|ref|YP_003262887.1| alanine racemase [Halothiobacillus neapolitanus c2]
 gi|261836073|gb|ACX95840.1| alanine racemase [Halothiobacillus neapolitanus c2]
          Length = 378

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 180/364 (49%), Gaps = 20/364 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N      ++   +  A VK +AYG G   +A AL +  V  F V ++ EG
Sbjct: 23  LTIDLAALRHNAAVARQVAKGRKLLAAVKADAYGHGMATVARALRDR-VDGFMVATLGEG 81

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LRL     R+ VL G+    E        + PV     Q+     +   G+     L+
Sbjct: 82  EALRLAGITQRVLVLQGVMSQAEARRAARRFLEPVFHHASQIDAVGTV-GFGLPLTAWLK 140

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +R+G + +E A  +   S  + +     +++H ACAD+P       Q+  F+   
Sbjct: 141 LDTGMHRVGFTPEEFAQAYARLSALRGVRPNPNVLTHFACADEPDRAPTDDQITLFKQTT 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
           +   G E SL +S+G+L  P+      RPGI LYGG   I  +     ++ V+T   ++I
Sbjct: 201 TECSG-ETSLCNSAGLLAYPHAGGDWVRPGIMLYGGNPFITGTAADWDLKPVMTLTTQLI 259

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG+        + V +IGY DGYP         H+P+   G    + 
Sbjct: 260 AVREVQAGERVGYGGKFTAPATMPVGVVSIGYGDGYP--------RHAPN---GTPIVVN 308

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ++G+++MD+   D+   +  +VGD +Q +G  + +D+VA A+GT +Y+L+ ++  
Sbjct: 309 GQRSQVIGRVSMDLVTVDLR-GIQAQVGDTVQCWGDQLPIDEVAQAAGTISYELMCQMSG 367

Query: 364 RYAK 367
           R  +
Sbjct: 368 RVTR 371


>gi|167855746|ref|ZP_02478501.1| alanine racemase [Haemophilus parasuis 29755]
 gi|167853143|gb|EDS24402.1| alanine racemase [Haemophilus parasuis 29755]
          Length = 378

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 184/378 (48%), Gaps = 32/378 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+ +AL++N   + +L+ +++  AVVK NAYG G   +   L +  V+ F V  ++E + 
Sbjct: 8   INGSALRHNMRLIKSLAPHSKICAVVKANAYGQGIRAVIKNLEDQ-VEAFGVARIKEALT 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDT------------NLIPVISSVPQLTFYS 113
           ++      +I +L G    +E +      FDT            N+     +  Q  F+ 
Sbjct: 67  IQESGYAGKILLLEGFFDREELLKTLSRRFDTVIHCLEQLELLENVAQEWQAEKQKGFWQ 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           +           L++DTG +RLG+  ++  +F        L +    +SH + AD+    
Sbjct: 127 RKTKIYFPITVWLKIDTGMHRLGIHPEQVAEFYQRLTACPLVECIHFVSHFSRADELDCD 186

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM- 232
               Q+  F T+   YK +E S+++SSGIL     H+   RPGI +YG +        + 
Sbjct: 187 YTEKQIATFETVSQEYK-VERSISASSGILYWKQAHYDWVRPGIIMYGISPHTTPIIDLG 245

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V+T  + +I +R   AGE V YGG     +D+ I V AIGY DGYP         ++
Sbjct: 246 FKPVMTLSSSLIAVRSHKAGEPVGYGGSWVSDKDTKIGVVAIGYGDGYP--------RNA 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
           P    G   F+ G  VPI+G+++MDM   D+      +VGD ++++G  + +++VA A G
Sbjct: 298 PE---GTPVFVNGRKVPIVGRVSMDMMTVDLGIDSQDKVGDEVELWGERLLIEEVAEAIG 354

Query: 352 TTNYDLLVRIGTRYAKFY 369
           + NY+L+ ++  R    Y
Sbjct: 355 SINYELITKLTPRVITEY 372


>gi|52425237|ref|YP_088374.1| alanine racemase [Mannheimia succiniciproducens MBEL55E]
 gi|81825540|sp|Q65TC1|ALR_MANSM RecName: Full=Alanine racemase
 gi|52307289|gb|AAU37789.1| Alr protein [Mannheimia succiniciproducens MBEL55E]
          Length = 357

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 185/369 (50%), Gaps = 27/369 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +KI   ALK+N   +   + +++  AVVK NAYG G E ++  L N  V  F V  + E 
Sbjct: 6   VKISSVALKHNIQIIKQKAPHSKIIAVVKANAYGHGVEFVSSTLENL-VDGFGVARLAEA 64

Query: 69  VKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
           + +R       I +L G   P    I+   N+  V+ +  QL     +    + +P    
Sbjct: 65  LSVRSNGVTKPILLLEGFFSPKDLPILSVNNIQTVVHNQDQL---DAIKRANLENPIKVW 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           L++DTG +RLG+SL+E +D+ +N       + ++  + SH + AD+  S   ++QL RF 
Sbjct: 122 LKIDTGMHRLGVSLEE-VDYYYNELMNCPNVDEVGFV-SHFSRADETDSDYTNIQLNRFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
               + KG   ++A+S GIL   + H +  RPGI +YG    IN     + +  V+T  +
Sbjct: 180 DATKNKKG-NRTIAASGGILFWEDSHLEYIRPGIIMYG-VSPINIPSSEYGLIPVMTLTS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    GE V YGG     RD+ I V AIGY DGYP  +             G   
Sbjct: 238 SLIAVRDHKKGEPVGYGGIWVSERDTKIGVVAIGYGDGYPRNVPA-----------GTPI 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           +I G  VPI+G+++MDM   D+      +VGD   ++G ++ +++VA  +G  +Y+L+ +
Sbjct: 287 YINGRRVPIVGRVSMDMVTVDLGPDCKDKVGDEAVLWGKELPIEEVAEITGLLSYELMTK 346

Query: 361 IGTRYAKFY 369
           +  R    Y
Sbjct: 347 LTPRVLTEY 355


>gi|332535828|ref|ZP_08411559.1| alanine racemase, biosynthetic [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034780|gb|EGI71319.1| alanine racemase, biosynthetic [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 359

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 190/374 (50%), Gaps = 37/374 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+LTAL +N   +   + N++  AV+K NAYG G   IA  L NA    F V  ++EG+
Sbjct: 7   EINLTALAHNLAQVKGFAPNSKVMAVLKANAYGHGLVTIAQHLNNADA--FAVARIDEGL 64

Query: 70  KLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKL-----MSCGVSHP 123
            LR       I +L G  +     I+   N   +I    QL    K      ++C     
Sbjct: 65  ALRAGGLTKPIVLLEGFFNKADLPILLANNFQTIIHDEYQLAALEKAKLDAPITCW---- 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLER 181
             L+V+TG +RLG++  E  +  +N   K     + +  ++H +CADD  +     Q+  
Sbjct: 121 --LKVNTGMHRLGIA-PEQFEAFYNRLQKTPNAKNSVNLMTHFSCADDVDNAKTVQQITL 177

Query: 182 FRTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVV 236
           F  L++   GI+ +  L++S+GI+  P+ H    RPG+ LYG +   + I + H ++ V+
Sbjct: 178 FDNLVN---GIDQAHCLSNSAGIIAWPSGHGDWVRPGLMLYGVSPMANSIGQQHKLKPVM 234

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               R+I +R   A E V YGG+ K  + + +AV A+GY DGYP       ++    V +
Sbjct: 235 RLTTRVIAVRDVPANEAVGYGGRWKSDKPTKLAVVAMGYGDGYP-----RHAKEGTPVII 289

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G + +       I+G + MDM   DI  +  +I+VGD + ++GP++ ++++AL + T  Y
Sbjct: 290 GEQRY------GIVGSVAMDMISVDIGANEHNIKVGDRVTMWGPELPVEEIALCADTIPY 343

Query: 356 DLLVRIGTRYAKFY 369
           +LL  I  R +  Y
Sbjct: 344 ELLCNITPRVSYEY 357


>gi|284051398|ref|ZP_06381608.1| alanine racemase [Arthrospira platensis str. Paraca]
 gi|291568246|dbj|BAI90518.1| alanine racemase [Arthrospira platensis NIES-39]
          Length = 399

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 177/380 (46%), Gaps = 31/380 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  A+ NN   + + LS   R  AV+K +AYG G   +A  +   GV DF V ++ E
Sbjct: 28  VEVDRWAIANNVKQIRHLLSPETRFMAVIKADAYGHGAVSVAKIVSEIGVDDFAVATIPE 87

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           G++LR    Q  I VL  +H   E K I    L P + +  Q L F   L S   S P  
Sbjct: 88  GMELRRLGIQQPILVLGAVHTADEIKAIAHWGLQPTLCTPTQALLFSETLQSIQRSLPVQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L +DTG +RLG   ++AL+F          ++S I SH A AD     +   Q  RF+ +
Sbjct: 148 LNIDTGMSRLGTWWEQALEFVQLVRGLPNLEISGIYSHFATADIRDRTIMDQQHWRFQQV 207

Query: 186 ISHYKGIEA-----------SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
           ++  +   +            LA+S+  L     H+ + R G+SLYG      +     +
Sbjct: 208 LAQIQEHTSLLSVPTIKPCLHLANSAATLTDRALHYDMVRVGLSLYGLYPAPHLRSVINL 267

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  ++  ARI  I+   AG  VSYG +    + + IAV  IGYADG P  LS        
Sbjct: 268 QPAMSIRARITQIKTIEAGCGVSYGYKFIAKQRTPIAVVGIGYADGVPRQLSNC------ 321

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 K  I+G  VP +G ITMD  M D+T    ++VG+ + + G D    I  DD A 
Sbjct: 322 -----MKVLIRGQFVPQIGAITMDQLMLDVTAIPDLQVGEVVTLLGSDRHHSISADDWAQ 376

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
             GT ++++L     R  + 
Sbjct: 377 QLGTISWEILCGFKHRLPRI 396


>gi|307609535|emb|CBW99033.1| hypothetical protein LPW_08181 [Legionella pneumophila 130b]
          Length = 357

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 190/372 (51%), Gaps = 39/372 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+ +AL +N   +  L+   +  A+VK NAYG G  ++AP L +  ++ F V  +EE
Sbjct: 6   RLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVACLEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + +R    +    +  G+    E  +  + +   ++    QL +   L+   + +P  +
Sbjct: 65  ALAIRALGVETSCILFQGVFSSDELSVAVENDFACILHHAQQLEW---LIKTPLPYPIKI 121

Query: 127 --QVDTGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             +V+TG +RLG  + E         T    +K +G    +++HLACAD+P    N  Q+
Sbjct: 122 WVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKNIG----LMTHLACADEPHRPENQQQI 177

Query: 180 ERFRTL-ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH------PM 232
             F+ + I  ++  + S+A+S+ I+  P+ H  + RPGI LYG +   N++       P+
Sbjct: 178 SLFQEISIPGFR--QRSIANSAAIISFPDSHADVVRPGIMLYGVSPFANQNARDLSLIPV 235

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++A   I  I    +   V YGG  K  + S I + A GY DGYP  +S    E +P
Sbjct: 236 MRFMSA---ISAIHDNPSFAQVGYGGTWKSDKPSRIGIVAAGYGDGYPRHIS----EKTP 288

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                   +++G  V I+G+++MDM   D+T+   +E+GD ++++G  + ++ +A ++GT
Sbjct: 289 V-------WVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGT 341

Query: 353 TNYDLLVRIGTR 364
             Y+LL +I  R
Sbjct: 342 VGYELLCQISER 353


>gi|114046202|ref|YP_736752.1| alanine racemase [Shewanella sp. MR-7]
 gi|123131743|sp|Q0HYW0|ALR_SHESR RecName: Full=Alanine racemase
 gi|113887644|gb|ABI41695.1| alanine racemase [Shewanella sp. MR-7]
          Length = 358

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 186/368 (50%), Gaps = 24/368 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I  +AL+NN   +   +  ++  AVVK N YG G   +A  L+ A    F +  +
Sbjct: 4   FPRAEISSSALQNNLAVLRQQASRSQVMAVVKANGYGHGLLNVANCLHTA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE ++LR    +AR+ +L G     +  ++   ++  V+    Q+     L    +S P 
Sbjct: 62  EEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEM---LEQATLSKPV 118

Query: 125 A--LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG++ ++ A  +   +    + +   +++H ACAD+P ++   VQ++ 
Sbjct: 119 TVWLKVDSGMHRLGVTPEQFAQVYARLTACDNVAKPIHLMTHFACADEPENNYTQVQMQT 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTA 238
           F  L +   G   +LA+S+G L  P       RPGI+LYG    T     +H +   +  
Sbjct: 179 FNQLTADLPGFR-TLANSAGALYWPKSQGDWIRPGIALYGVSPVTGDCGANHGLIPAMNL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +R+I +R   AG+ V YG      +D+ + V AIGY DGYP         ++P    G 
Sbjct: 238 VSRLIAVRDHKAGQPVGYGCYWTAKQDTRLGVVAIGYGDGYP--------RNAPE---GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+    + +VGD   ++G  + +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPIVGRVSMDMLTVDLGADAADQVGDEALLWGAALPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|237807335|ref|YP_002891775.1| alanine racemase [Tolumonas auensis DSM 9187]
 gi|237499596|gb|ACQ92189.1| alanine racemase [Tolumonas auensis DSM 9187]
          Length = 358

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 186/369 (50%), Gaps = 28/369 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++I+L AL++N+  +   S  ++  AV+K NAYG     +A  L  A    F V  +EE
Sbjct: 6   RIQINLKALQHNFEKIKKCSPKSKIIAVIKGNAYGHDAVLVAKTLQQADA--FAVARIEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            V LR    +  I +L G    ++ +I       PVI    QL   + ++S  +  P   
Sbjct: 64  AVVLRQAGIERPIVLLEGCFCAKDLLIAAHYQFQPVIHHAGQL---ADILSASLPTPVKV 120

Query: 126 -LQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L++DTG +R+G+  ++   +     NS N   G +  + SH   AD+ S+     QL  
Sbjct: 121 WLKIDTGMHRIGIMPEQVAHYVTQLSNSANVS-GHVGFV-SHFYRADELSASTTHEQLAC 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
           F    + Y G E SL++S+G+L   + HF   RPGI+LYG     D    +  +Q V+T 
Sbjct: 179 FIQATAPYPG-EKSLSNSAGVLYWSDAHFDWVRPGIALYGISPRADSTGIAEGLQPVMTL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I +R+  AGE + YGG     +D+ I V A+GY DGYP          +P+   G 
Sbjct: 238 KSTLISVREHKAGESIGYGGHWIADQDTRIGVIAMGYGDGYP--------RMAPA---GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G  V + G+++MDM   D+      ++GD + ++G  +  ++VA   GT  Y+L+
Sbjct: 287 PVLVNGRKVALAGRVSMDMMTVDLGPESQDQIGDEVTLWGNGLPAEEVARHIGTIAYELV 346

Query: 359 VRIGTRYAK 367
           ++I +R  +
Sbjct: 347 IKITSRVQR 355


>gi|120600208|ref|YP_964782.1| alanine racemase [Shewanella sp. W3-18-1]
 gi|254802384|sp|A1RNI3|ALR_SHESW RecName: Full=Alanine racemase
 gi|120560301|gb|ABM26228.1| alanine racemase [Shewanella sp. W3-18-1]
          Length = 358

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 186/368 (50%), Gaps = 24/368 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I  +AL+NN   +   +  ++  AVVK N YG G   +A  L NA    F +  +
Sbjct: 4   FPRAEISSSALQNNLAVLRQQARASQVMAVVKANGYGHGLLNVANCLVNA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE ++LR    +AR+ +L G     +  ++   ++  V+    Q+    ++    ++ P 
Sbjct: 62  EEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQVK---LTKPV 118

Query: 125 A--LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG++ ++ A  +        + +   +++H ACAD+P +H   VQ+  
Sbjct: 119 TVWLKVDSGMHRLGVTPEQFATVYARLMACPNIAKPIHLMTHFACADEPDNHYTDVQMAA 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
           F  L +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +  
Sbjct: 179 FNELTAGLPGFR-TLANSAGALYWPKSQGDWIRPGIALYGVSPVAGDCGTNHGLIPAMNL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +R+I +R   A + V YG      +D+ + V AIGY DGYP         ++P    G 
Sbjct: 238 VSRLIAVRDHKANQPVGYGCYWTAKQDTRLGVVAIGYGDGYP--------RNAPE---GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+    + +VGD + ++G D+ +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPIVGRVSMDMLTVDLGQDATDKVGDDVLLWGQDLPVEEVAERIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|212212678|ref|YP_002303614.1| alanine racemase, biosynthetic [Coxiella burnetii CbuG_Q212]
 gi|226711037|sp|B6J0J1|ALR_COXB2 RecName: Full=Alanine racemase
 gi|212011088|gb|ACJ18469.1| alanine racemase, biosynthetic [Coxiella burnetii CbuG_Q212]
          Length = 364

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 186/370 (50%), Gaps = 37/370 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I++TALK+N   + AL+  +   A++K N YG G  ++A AL +A    F V  ++E + 
Sbjct: 8   INVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVACIDEALT 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    ++ I V+ G +   E   F  + L  VI    Q++   K  +   S    L++D
Sbjct: 66  LREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLKK-TNLTSSLSVWLKID 124

Query: 130 TGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           TG NRLG S++++        T +S  K +G    +++HLA AD+ +     +Q++RF +
Sbjct: 125 TGMNRLGFSVEQSPAVYNQLKTSSSIQKPIG----LMTHLADADNENKTFTELQIKRFFS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----------DKINKSHPMQT 234
           +     G   S+ +S+G    PN      RPGI LYG +          +KI K    + 
Sbjct: 181 VTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKK--FRP 237

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A+II I+     + V YG       D  IA+ +IGY DGYP         H+PS 
Sbjct: 238 VMTLSAKIIAIKNRRKNDSVGYGCTWSCPEDMPIAIVSIGYGDGYP--------RHAPS- 288

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G + P++G+++MDM   D+    + +VGD + ++G  + ++ +A  +GT  
Sbjct: 289 --GTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIA 346

Query: 355 YDLLVRIGTR 364
           Y+LL +I  R
Sbjct: 347 YELLCKITQR 356


>gi|29654196|ref|NP_819888.1| alanine racemase, biosynthetic [Coxiella burnetii RSA 493]
 gi|165918546|ref|ZP_02218632.1| alanine racemase [Coxiella burnetii RSA 334]
 gi|81839075|sp|Q83D71|ALR_COXBU RecName: Full=Alanine racemase
 gi|29541462|gb|AAO90402.1| alanine racemase, biosynthetic [Coxiella burnetii RSA 493]
 gi|165917792|gb|EDR36396.1| alanine racemase [Coxiella burnetii RSA 334]
          Length = 364

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 186/370 (50%), Gaps = 37/370 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I++TALK+N   + AL+  +   A++K N YG G  ++A AL +A    F V  ++E + 
Sbjct: 8   INVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVACIDEALT 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    ++ I V+ G +   E   F  + L  VI    Q++   K  +   S    L++D
Sbjct: 66  LREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEK-TNLTSSLSVWLKID 124

Query: 130 TGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           TG NRLG S++++        T +S  K +G    +++HLA AD+ +     +Q++RF +
Sbjct: 125 TGMNRLGFSVEQSPAVYNQLKTSSSIQKPIG----LMTHLADADNENKTFTELQIKRFFS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----------DKINKSHPMQT 234
           +     G   S+ +S+G    PN      RPGI LYG +          +KI K    + 
Sbjct: 181 VTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKK--FRP 237

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A+II I+     + V YG       D  IA+ +IGY DGYP         H+PS 
Sbjct: 238 VMTLSAKIIAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYP--------RHAPS- 288

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G + P++G+++MDM   D+    + +VGD + ++G  + ++ +A  +GT  
Sbjct: 289 --GTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIA 346

Query: 355 YDLLVRIGTR 364
           Y+LL +I  R
Sbjct: 347 YELLCKITQR 356


>gi|86606130|ref|YP_474893.1| alanine racemase [Synechococcus sp. JA-3-3Ab]
 gi|86554672|gb|ABC99630.1| alanine racemase [Synechococcus sp. JA-3-3Ab]
          Length = 429

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 182/374 (48%), Gaps = 27/374 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID   L+ N   + A LS +    AVVK NAYG G   +AP    AG +   V ++ E
Sbjct: 60  VEIDAAQLRENLRLLQARLSPDTEIWAVVKANAYGHGARLVAPIALAAGAKGLCVATLAE 119

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR    QA I VL  ++   E +      L   ++   Q+    ++    G   P  
Sbjct: 120 GIELRQAGLQAPILVLGALNTWAELQQAMAARLEVSLTRAEQIPVMRQVARWAGRPVPVH 179

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + VDTG  RLG+  QEA             +   + SH A AD+P S V + Q  RF  +
Sbjct: 180 VNVDTGMTRLGIPWQEAAAVWGQICRIPELEGCSLFSHFATADEPDSPVMAQQEARFAQV 239

Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVVTAE 239
           +   +     L      +S+G L+  + H+   R G++LYG +   +   P ++ ++  +
Sbjct: 240 VEQIRQAGDPLPPLHLDNSAGALI--HLHYPRVRLGLALYGLSPAPHLQVPGLRPILRLK 297

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           AR+  I+   A   VSYG +   +R S IA  AIGYADG P  LSG         +L  +
Sbjct: 298 ARLTHIQTVPAHTGVSYGHRYVTSRPSRIATLAIGYADGIPRRLSG---------WL--R 346

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-----KLDDVALASGTTN 354
           G+++G ++  +G ITMD  M+D+T+   I+VGD +++ GP +      + D A   GT +
Sbjct: 347 GWVRGSLIQQVGTITMDQCMWDVTERPDIQVGDVVELLGPHLASAGFSIQDWADQLGTIS 406

Query: 355 YDLLVRIGTRYAKF 368
           Y+LL  +  R  + 
Sbjct: 407 YELLCGLSARLPRV 420


>gi|261867673|ref|YP_003255595.1| alanine racemase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293392262|ref|ZP_06636596.1| alanine racemase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261413005|gb|ACX82376.1| alanine racemase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290952796|gb|EFE02915.1| alanine racemase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 360

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 184/371 (49%), Gaps = 32/371 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK+N  ++   +  ++  AVVK NAYG G   ++ A+ N  V  F V  +EE +
Sbjct: 9   KISSVALKHNIQTIKQKAPESKIIAVVKANAYGHGVVFVSSAVENL-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
           KLR       I +L G    ++  ++   N+  V+ S  QL     L      +P    L
Sbjct: 68  KLRSNGITKPILLLEGFFSAKDLPVLAVNNIQTVVHSQEQL---DALEQAKTPNPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLE 180
           ++DTG +RLG+ L E      ++F +KL  L  +      +SH + AD+ +      QL 
Sbjct: 125 KIDTGMHRLGVHLDEV-----DAFYQKLKSLPCVDPNIGFVSHFSRADELACGYTEKQLA 179

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           RF    +  KG E S+++S GIL   + H    RPGI +YG    +   K + +  V+  
Sbjct: 180 RFLQA-TEGKGGERSISASGGILFWQDAHLDWIRPGIIMYGISPNNTAGKEYGLIPVMNL 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I +R+   GE V YGG     +D+ I V AIGY DGYP      D      V+L G
Sbjct: 239 TSSLIAVREHKKGEPVGYGGVWMSDKDTKIGVVAIGYGDGYPR-----DVPEGTPVYLNG 293

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           +       VPI+GK++MDM   D+      +VGD + ++G ++ ++++A  +G  +Y+L+
Sbjct: 294 R------RVPIVGKVSMDMLTVDLGADSQDKVGDEVILWGKELPIEEIAAITGVISYELI 347

Query: 359 VRIGTRYAKFY 369
            ++  R    Y
Sbjct: 348 TKLTPRVLTEY 358


>gi|67458471|ref|YP_246095.1| alanine racemase [Rickettsia felis URRWXCal2]
 gi|75537059|sp|Q4UNC8|ALR_RICFE RecName: Full=Alanine racemase
 gi|67004004|gb|AAY60930.1| Alanine racemase [Rickettsia felis URRWXCal2]
          Length = 462

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 195/468 (41%), Gaps = 119/468 (25%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLG------------------------ 44
           L+I+L+A+KNN+  +  +   +   A VK N YGLG                        
Sbjct: 6   LEINLSAIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 45  -----------------CEK--------------IAPALYN--AGVQDFFVTSVEEGVKL 71
                            CEK              ++   +N  +G+Q  F     +G  +
Sbjct: 66  VNLRKALASWHESVFRHCEKNYTVIRRSNPVKNSVSQNFFNYFSGLQQCFAPR-NDGSSI 124

Query: 72  RLYTPQA-----RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYA 125
              TP+A      I VL G+       + + NL PV++++ Q+  + K  +      P  
Sbjct: 125 HATTPKALDNDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCY 184

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L  +TG NRLGL+  E     +N    K   L  IISHLA +++  +  N  QL RF+T 
Sbjct: 185 LHFNTGINRLGLTHNEIEQLINNRDLLKGLDLQYIISHLAVSEEIDNPYNLEQLNRFKTY 244

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-------------- 231
           + ++  ++ASLA+S GI LG +YHF L RPG +LYG    I+ S+               
Sbjct: 245 LQYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPVIDLSNNLSYKEEFEGDTERR 304

Query: 232 ----------------------------MQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
                                       +Q  VT +A II ++       + Y       
Sbjct: 305 TAAYINVREDSSTGSTYKLPLEGGYSRGLQNPVTLKAPIIHLQNLTLDSHIGYNMTFTTE 364

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
           RDS+IA   +GYADG+    S             G+ FI G  VPI+G+I+MD+   D+T
Sbjct: 365 RDSVIATLPLGYADGFSRNFSN-----------QGEVFINGRSVPIVGRISMDLINIDVT 413

Query: 324 D--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D   L I +G   +I G     D +A   GT  Y++L  +G+RY + Y
Sbjct: 414 DLPPLDIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSRYKRIY 461


>gi|296106326|ref|YP_003618026.1| alanine racemase [Legionella pneumophila 2300/99 Alcoy]
 gi|295648227|gb|ADG24074.1| alanine racemase [Legionella pneumophila 2300/99 Alcoy]
          Length = 357

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 190/372 (51%), Gaps = 39/372 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+ +AL +N   +  L+   +  A+VK NAYG G  ++AP L +  ++ F V  +EE
Sbjct: 6   RLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVACLEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + +R    +    +  G+    E  +  + +   ++    QL +   L+   + +P  +
Sbjct: 65  ALAIRALGVETPCILFQGVFSSDELSVAVENDFACILHHAQQLEW---LIKTPLPYPIKI 121

Query: 127 --QVDTGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             +V+TG +RLG  + E         T    +K +G    +++HLACAD+P    N  Q+
Sbjct: 122 WVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKNIG----LMTHLACADEPHRPENQQQI 177

Query: 180 ERFRTL-ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH------PM 232
             F+ + I  ++  + S+A+S+ I+  P+ H  + RPGI LYG +   N++       P+
Sbjct: 178 SLFQEISIPGFR--QRSIANSAAIISFPDSHADVVRPGIMLYGVSPFANQNARDLSLIPV 235

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++A   I  I    +   V YGG  K  + S I + A GY DGYP  +S    E +P
Sbjct: 236 MRFMSA---ISAIHDNPSFAQVGYGGTWKSDKPSRIGIVAAGYGDGYPRHIS----EKTP 288

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                   +++G  V I+G+++MDM   D+T+   +E+GD ++++G  + ++ +A ++GT
Sbjct: 289 V-------WVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGT 341

Query: 353 TNYDLLVRIGTR 364
             Y+LL +I  R
Sbjct: 342 VGYELLCQISER 353


>gi|238752148|ref|ZP_04613630.1| Alanine racemase 1 [Yersinia rohdei ATCC 43380]
 gi|238709621|gb|EEQ01857.1| Alanine racemase 1 [Yersinia rohdei ATCC 43380]
          Length = 359

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 187/366 (51%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHP--YALQ 127
           LR       I +L G    ++  +   N I   + S+ QL     L +  +S P    ++
Sbjct: 66  LRSGGIVKPILLLEGFFAAEDLPVLVANRIETAVHSIEQL---EALEAAELSAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F    S  K + Q   I+SH + AD+P       QL+ F +  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSDCKNVIQPVNIMSHFSRADEPLIETTRQQLDCFDSFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARII 243
           +   G + S+A+S GILL P  H    RPGI LYG +  D+   SH  +   +  ++ +I
Sbjct: 183 TGKPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFNLLPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G    I 
Sbjct: 242 AVREHKAGESVGYGGTWVSERDTRLGVVAIGYGDGYPRS--------APS---GTPMLIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+    + +VGD + ++G ++ ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GREVGIVGRVSMDMISVDLGPDATDKVGDEVLLWGAELPVETIAARTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|168241390|ref|ZP_02666322.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168462709|ref|ZP_02696640.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194451208|ref|YP_002045847.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194409512|gb|ACF69731.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195633999|gb|EDX52351.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|205339703|gb|EDZ26467.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 356

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIA-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLNAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|158334044|ref|YP_001515216.1| alanine racemase [Acaryochloris marina MBIC11017]
 gi|158304285|gb|ABW25902.1| alanine racemase, putative [Acaryochloris marina MBIC11017]
          Length = 386

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 179/379 (47%), Gaps = 30/379 (7%)

Query: 5   EFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E   + IDL AL+NN   +   L       AVVK + YG G   +A      G     V 
Sbjct: 13  ERAWVNIDLKALENNVRQIKQQLLPQTALMAVVKADGYGHGAVTVAQTALANGATWLGVA 72

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++ EG++LR     A I +L   H  QE + I    L P + S  Q   +S+ +   +  
Sbjct: 73  TILEGIELRQADINAPILILGATHTVQEIEAIVRWQLQPTLCSPEQALIFSRHLQHPL-- 130

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
           P  L+VDTG +RLG   Q+   F    F  +L  L +  I SHLA ADD  S     Q  
Sbjct: 131 PIHLKVDTGMSRLGPIWQQGATFI--EFVSRLPNLKIASIYSHLATADDADSSFMLQQQS 188

Query: 181 RFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
           R + ++S  +  +  L     A+S+G L+GP +H+ L R G++LYG        ++  +Q
Sbjct: 189 RLQDVLSRIQAQDIPLPKLHLANSAGTLVGPQFHYDLVRVGLALYGLYPAPHFQQAIALQ 248

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +ARI  I+   AG  VSY       +   +AV  IGYADG P +LS   +     
Sbjct: 249 PVMQVKARITQIKTLPAGSGVSYNHTFTTEQPLTVAVVGIGYADGVPRSLSNQMNV---- 304

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I+G + P +G ITMD  M D++D  +++VG+ + I G D    I  +  A A
Sbjct: 305 -------IIRGRLAPQIGAITMDQLMVDVSDVPNLQVGEVVTILGQDGKASISAETWADA 357

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT +Y+++     R  + 
Sbjct: 358 LGTISYEIVCGFKHRLPRI 376


>gi|194442850|ref|YP_002041058.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194401513|gb|ACF61735.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 356

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 183/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A       +  + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLWAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++    GE V YGG+  +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSVGERVGYGGRYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|114564506|ref|YP_752020.1| alanine racemase [Shewanella frigidimarina NCIMB 400]
 gi|122298735|sp|Q07XT3|ALR_SHEFN RecName: Full=Alanine racemase
 gi|114335799|gb|ABI73181.1| alanine racemase [Shewanella frigidimarina NCIMB 400]
          Length = 372

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 186/382 (48%), Gaps = 43/382 (11%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPAL-----------YN 54
           F R +I   AL++N   +  ++ N++  AVVK N YG G   +A  +           Y+
Sbjct: 4   FPRAEISRYALQSNLAQLRLIAPNSKIMAVVKANGYGHGLLNVAECVGLLNYVESVCKYH 63

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYS 113
            G   F +  +EE ++LR    + ++ +L G     +   +   N+  V+    QL    
Sbjct: 64  GGADGFGLARLEEALQLREGGVKGKLLLLEGFFRQSDLPTLVSHNIDTVVHHESQLQM-- 121

Query: 114 KLMSCGVSHPYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLA 165
            L +  +  P    +++DTG +R+G SL++      NS  ++L     +      ++H A
Sbjct: 122 -LETIALDKPVTVWIKIDTGMHRIGFSLEQ-----FNSIYQRLLACPQVAKPIHLMTHFA 175

Query: 166 CADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225
           CAD+P + +   Q+  F   +S  +G + +LA+S+G L  P       RPGI+LYG +  
Sbjct: 176 CADEPDNPLTQTQMNAFEQQVSGLEG-DRTLANSAGTLFWPTSQADWVRPGIALYGVSPV 234

Query: 226 INK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
           +     +H +   +   + +I +R+  AG+ V YG      +D+ + V AIGY DGYP  
Sbjct: 235 VGDRGVNHRLIPAMELVSNLIAVREHKAGDSVGYGASWTAKKDTRLGVVAIGYGDGYP-- 292

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
                  ++P    G   +I G  VPI+G+++MDM   D+       VGD +Q++G  + 
Sbjct: 293 ------RNAPE---GTPVWINGRRVPIVGRVSMDMLTVDLGADAQDNVGDSVQLWGKALA 343

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           +++VA   GT  Y+L+ ++  R
Sbjct: 344 VEEVAEHIGTIAYELVTKLTPR 365


>gi|238764111|ref|ZP_04625065.1| Alanine racemase 1 [Yersinia kristensenii ATCC 33638]
 gi|238697648|gb|EEP90411.1| Alanine racemase 1 [Yersinia kristensenii ATCC 33638]
          Length = 359

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 187/366 (51%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHP--YALQ 127
           LR       I +L G    ++  +   N I   + S+ QL     L +  +S P    ++
Sbjct: 66  LRSGGIVKPILLLEGFFAAEDLPVLVANRIETAVHSIEQL---EALEAANLSAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F    S  + + Q   I+SH + AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSACRNIIQPVNIMSHFSRADEPLVDTTRQQLDCFDTFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARII 243
           +   G + S+++S GILL P  H    RPGI LYG +  D+   SH  +   +  ++ +I
Sbjct: 183 ADKPG-KQSISASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFDLLPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G   ++ 
Sbjct: 242 AVREHKAGEPVGYGGTWISERDTRLGVVAIGYGDGYPRS--------APS---GTPMWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+      +VGD + ++G ++ ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GREVGIVGRVSMDMISVDLGPEAIDKVGDEVLLWGAELPVEKIAARTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|294139221|ref|YP_003555199.1| alanine racemase [Shewanella violacea DSS12]
 gi|293325690|dbj|BAJ00421.1| alanine racemase, biosynthetic [Shewanella violacea DSS12]
          Length = 358

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 185/371 (49%), Gaps = 30/371 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I   ALKNN   +  ++  ++  AVVK N YG G   +A  + +A    F +  +
Sbjct: 4   FPRAEISCKALKNNLARLRQIAPASKIMAVVKANGYGHGLLNVAKCIEDA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP- 123
           EE + LR     +++ +L G   P     +   ++  V+ +  QL     L    +S P 
Sbjct: 62  EEAIALRDGGVTSKLILLEGFFRPVDLTTLVMKDIETVVHNEKQLEM---LEQASLSKPA 118

Query: 124 -YALQVDTGFNRLGLSLQEALDFTHNSFN----KKLGQLSLIISHLACADDPSSHVNSVQ 178
              L++DTG +RLG + ++   F H         ++ +   I+SH ACAD+P +     Q
Sbjct: 119 NVWLKLDTGMHRLGFTPEQ---FEHVYARLLDCPQVAKPIKIMSHFACADEPDNPYTREQ 175

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
           L  F  L  +  G E +LA+S+G L  P+ H    RPGISLYG +     + K+H +Q  
Sbjct: 176 LNIFNRLAKNLPG-ETTLANSAGTLYWPDSHKDWVRPGISLYGVSPVVGDLGKNHGLQPA 234

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   +++I IR+  AG+   YG   +   ++ + V AIGY DGYP         ++P   
Sbjct: 235 MELISQLIAIREHKAGDPAGYGCYWRAKEETKLGVVAIGYGDGYP--------RNAPE-- 284

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G +VPI+G+++MDM   D+    +  +GD   ++G  + ++ VA   GT  Y
Sbjct: 285 -GTPVWVNGRLVPIVGRVSMDMLTVDLGLDSTDSIGDEAIMWGSALPVEVVAEHIGTIAY 343

Query: 356 DLLVRIGTRYA 366
           +L+ ++  R A
Sbjct: 344 ELVTKLTPRVA 354


>gi|163803116|ref|ZP_02197000.1| alanine racemase [Vibrio sp. AND4]
 gi|159173108|gb|EDP57940.1| alanine racemase [Vibrio sp. AND4]
          Length = 358

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 185/371 (49%), Gaps = 34/371 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   +   + N++   VVK N YG G   +A    +A    F V  +EE ++
Sbjct: 8   IDLSALQHNLQRVKQQAPNSKVMVVVKANGYGHGLRHVAKHATHADA--FGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G +  G   ++   N+  V+    QL   + L    +  P    L+
Sbjct: 66  LRACGVVKPILLLEGFYSLGDLPVLVTNNIQTVVHCEEQL---AALEQADLETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLER 181
           +D+G +RLG+  ++     ++ F  +L +   +      +SH  CAD+  + + + Q++ 
Sbjct: 123 IDSGMHRLGVRPEQ-----YDEFISRLKECPNVAKPLRYMSHFGCADELDNKITTEQIDL 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           F +L +  +G E SLA+S+G+L  P       RPGI +YG +   +K  +    + V+T 
Sbjct: 178 FMSLTAGCQG-ERSLAASAGLLAWPQSQLDWVRPGIIMYGVSPFGEKTAQDMGYKPVMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I +R    G  V YGG     RD+ + V A+GY DGYP T        +P+   G 
Sbjct: 237 KSHLIAVRDVKKGASVGYGGIWTSERDTKVGVIAVGYGDGYPRT--------APN---GT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G  VPI G+++MDM   D+    + +V D   ++G D+ +++VA   GT  Y+L+
Sbjct: 286 PVLVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKDLPVEEVASHIGTIGYELV 345

Query: 359 VRIGTRYAKFY 369
            ++ +R    Y
Sbjct: 346 TKLTSRVEMEY 356


>gi|126659612|ref|ZP_01730742.1| alanine racemase [Cyanothece sp. CCY0110]
 gi|126619058|gb|EAZ89797.1| alanine racemase [Cyanothece sp. CCY0110]
          Length = 402

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 185/387 (47%), Gaps = 33/387 (8%)

Query: 2   HSNEFLR----LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           H +E +R    ++IDL+AL +N   +  L S      AVVK +AYG G   +A     AG
Sbjct: 13  HLSEIIRKRAWVEIDLSALSHNVRQIKQLLSPKTALMAVVKADAYGHGAIAVAQTALQAG 72

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKL 115
                V ++ EG++LR     A I +L  I+ P +   I   NL P +    Q    S+ 
Sbjct: 73  ASALAVATLGEGIELREAGITAPILILGAINTPEEIAAIAHWNLEPTLCYPEQAMVVSQT 132

Query: 116 MS-CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSS 172
           +S C    P  L++DTG +RLG+   +  +F   +  K+L  L+L  + SHLA ADDP  
Sbjct: 133 LSQCEKVLPVHLKLDTGMSRLGIPWHQGTEFV--TLVKQLPYLNLRSVYSHLATADDPDP 190

Query: 173 HVNSVQLERFRTLISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYG--GTDK 225
               +Q +RF++ I++ K  GI       A+S+  L+ P  H+ L R G+ LYG      
Sbjct: 191 SHMYLQHKRFKSAIANLKTQGIGPPRLHFANSAATLIAPQLHYDLVRVGLGLYGLYPAPH 250

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +    P++ V+  +A+I  I+       VSYG Q    R   IAV  IGYADG P  LS 
Sbjct: 251 LRSIVPLKPVLQVKAKITQIKSIPTNTGVSYGYQFVSDRPMKIAVVGIGYADGVPRNLSN 310

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
                        +  I+G  V  +G ITMD  M D++    ++VGD + + G D    I
Sbjct: 311 RL-----------QVLIQGQRVRQIGAITMDQLMLDVSHLRQVKVGDVVTLIGQDGDYEI 359

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKF 368
             D  A   GT ++++L     R  + 
Sbjct: 360 TADHWARMLGTISWEILCGFKHRLPRI 386


>gi|197247858|ref|YP_002146222.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211561|gb|ACH48958.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 356

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGAILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++ S  L++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|167554127|ref|ZP_02347868.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205321605|gb|EDZ09444.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 356

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++ S  L++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  I  R
Sbjct: 342 ELLCAIAPR 350


>gi|168237864|ref|ZP_02662922.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736004|ref|YP_002114836.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194711506|gb|ACF90727.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289280|gb|EDY28647.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 356

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGAILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRTMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|15893783|ref|NP_347132.1| alanine racemase [Clostridium acetobutylicum ATCC 824]
 gi|20137418|sp|Q97LR2|ALR1_CLOAB RecName: Full=Alanine racemase 1
 gi|15023352|gb|AAK78472.1|AE007563_12 Alanine racemase [Clostridium acetobutylicum ATCC 824]
 gi|325507906|gb|ADZ19542.1| alanine racemase [Clostridium acetobutylicum EA 2018]
          Length = 386

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 186/384 (48%), Gaps = 45/384 (11%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  +  N   +   S +     VVK +AYG G   +AP L   G     V  + E V
Sbjct: 11  EIDLDNIAYNMQQIRRCSKSDEIIGVVKADAYGHGAVDVAPVLLENGANRLAVAVISEAV 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP--VISSVPQLTFYSKLMSCGVSHPYALQ 127
           +LR    Q  I +L     G   +    ++I   +  +V    +  KL          L+
Sbjct: 71  ELRKSGIQCPIMIL-----GYTPLSLVDSIIKYSIEQTVFSYDYAEKLSEAARQKNITLR 125

Query: 128 V----DTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSSHVNSV 177
           +    DTG  R+G L  +E++   +     K+ +LS II     SH + +D+ +      
Sbjct: 126 IHIALDTGMGRIGFLPTEESVWEVY-----KISKLSNIIIEGIFSHFSTSDETNKEYTYA 180

Query: 178 QLERFRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           QL++F    +    K I+ ++    +S+ I+  P  HF+ TRPGI LYG   +++++K+ 
Sbjct: 181 QLKKFEWFYNELRKKNIKINIRHIGNSAAIMELPETHFEATRPGIILYGYYPSNEVDKNK 240

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ ++T +  ++ I+K + GE VSYG + K  R+S+IA   +GYADGY   LSG    
Sbjct: 241 LNLKPIMTLKTNVVHIKKMMPGEYVSYGRKFKCERESIIATLPVGYADGYTRMLSG---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DIKL--DD 345
                    K  I G   P++G+I MD  M DITD  S++VGD + I G   D K   DD
Sbjct: 297 -------KAKVIINGNYAPVIGRICMDQCMIDITDLPSVQVGDEVVIMGESDDKKFTADD 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY+++  I  R  + Y
Sbjct: 350 MAEIIGTINYEVICMISKRVPRVY 373


>gi|157372681|ref|YP_001480670.1| alanine racemase [Serratia proteamaculans 568]
 gi|157324445|gb|ABV43542.1| alanine racemase [Serratia proteamaculans 568]
          Length = 359

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 185/364 (50%), Gaps = 20/364 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +   +  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRQAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G    ++  ++   N+   + S+ QL    +  +     P  +++D
Sbjct: 66  LRSGGIVKPILMLEGFFCAEDLPVLVANNIETAVHSIEQLEALEQ-ATLARPVPVWMKLD 124

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++A  F    S  + + Q   I+SH + AD+P S     Q++ F +  + 
Sbjct: 125 TGMHRLGVRPEQAEAFYQRLSACRNVVQPVNIMSHFSRADEPESDTTLKQIQCFESFAAG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILI 245
             G + S+A+S G LL P+ H +  RPGI LYG +         + +Q  +T ++ +I +
Sbjct: 185 KPG-QRSIAASGGTLLWPDAHNEWVRPGIILYGVSPMEGSQGCQYDLQPAMTLKSNLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AGE V YGG      D+ + V A+GY DGYP +        +P+   G   ++ G 
Sbjct: 244 REHKAGESVGYGGTWVSAGDTRLGVVAMGYGDGYPRS--------APT---GTPVWLNGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI+G+++MDM   D+    + +VGD + ++G  + ++ +A  +G + Y+L+ ++  R 
Sbjct: 293 EVPIVGRVSMDMMSVDLGPEATDKVGDEVVLWGQALPVERIADCTGISAYELITKLTQRV 352

Query: 366 AKFY 369
           +  Y
Sbjct: 353 SMEY 356


>gi|16765143|ref|NP_460758.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56413279|ref|YP_150354.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|167993251|ref|ZP_02574346.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168259965|ref|ZP_02681938.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|197362204|ref|YP_002141841.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|113661|sp|P06191|ALR2_SALTY RecName: Full=Alanine racemase, catabolic
 gi|153939|gb|AAA27054.1| alanine racemase (dadB) (EC 5.1.1.1) [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16420333|gb|AAL20717.1| alanine racemase 2 [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56127536|gb|AAV77042.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093681|emb|CAR59151.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205328703|gb|EDZ15467.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205350739|gb|EDZ37370.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|261246987|emb|CBG24804.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993756|gb|ACY88641.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158326|emb|CBW17825.1| Alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912792|dbj|BAJ36766.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224435|gb|EFX49498.1| Alanine racemase, catabolic [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322616798|gb|EFY13706.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620391|gb|EFY17257.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625707|gb|EFY22526.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626157|gb|EFY22967.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322638917|gb|EFY35610.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640736|gb|EFY37386.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644122|gb|EFY40667.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649194|gb|EFY45632.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655353|gb|EFY51661.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660890|gb|EFY57121.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662812|gb|EFY59019.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667996|gb|EFY64155.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674242|gb|EFY70336.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675403|gb|EFY71477.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683182|gb|EFY79198.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686875|gb|EFY82853.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323130076|gb|ADX17506.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195234|gb|EFZ80414.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200174|gb|EFZ85260.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203827|gb|EFZ88845.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207381|gb|EFZ92329.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213735|gb|EFZ98517.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217366|gb|EGA02085.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220884|gb|EGA05320.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227984|gb|EGA12132.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231387|gb|EGA15500.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235827|gb|EGA19906.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240396|gb|EGA24439.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245289|gb|EGA29289.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249860|gb|EGA33759.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252850|gb|EGA36686.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257434|gb|EGA41128.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263314|gb|EGA46850.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266762|gb|EGA50248.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268968|gb|EGA52424.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|332988689|gb|AEF07672.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 356

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|238912133|ref|ZP_04655970.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 356

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCACSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|54293722|ref|YP_126137.1| hypothetical protein lpl0775 [Legionella pneumophila str. Lens]
 gi|81822433|sp|Q5WYG1|ALR_LEGPL RecName: Full=Alanine racemase
 gi|53753554|emb|CAH15009.1| hypothetical protein lpl0775 [Legionella pneumophila str. Lens]
          Length = 357

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 192/372 (51%), Gaps = 39/372 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+ +AL +N   +  L+   +  A+VK NAYG G  ++AP L +  ++ F V  +EE
Sbjct: 6   RLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVACLEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + +R    +    +  G+    E  +  + +   V+    QL +   L+   + +P  +
Sbjct: 65  ALAIRALGVETPCILFQGVFSSDELSVAVENDFACVLHHAKQLEW---LIKTPLPYPIKV 121

Query: 127 --QVDTGFNRLGL---SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             +V+TG +RLG     LQ+ +D   T    +K +G    +++HLACAD+P    N  Q+
Sbjct: 122 WVKVNTGMHRLGFKIHELQKVMDALQTCTWVDKNIG----LMTHLACADEPHRPENQQQI 177

Query: 180 ERFRTL-ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH------PM 232
             F+ + I  ++  + S+A+S+ I+  P+    + RPGI LYG +   N++       P+
Sbjct: 178 SLFQEISIPGFR--QRSIANSAAIISFPDSQADVVRPGIMLYGVSPFANQNARDLGLIPV 235

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++A   I  I    +   V YGG  K  + S I + A GY DGYP  +S    E +P
Sbjct: 236 MRFMSA---ISAIHDNPSFAQVGYGGTWKSDKPSRIGIVAAGYGDGYPRHIS----EKTP 288

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                   +++G  V I+G+++MDM   D+T+   +E+GD ++++G  + ++ +A ++GT
Sbjct: 289 V-------WVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGT 341

Query: 353 TNYDLLVRIGTR 364
             Y+LL +I  R
Sbjct: 342 IGYELLCQISER 353


>gi|329894372|ref|ZP_08270242.1| Alanine racemase [gamma proteobacterium IMCC3088]
 gi|328923168|gb|EGG30491.1| Alanine racemase [gamma proteobacterium IMCC3088]
          Length = 354

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 176/361 (48%), Gaps = 25/361 (6%)

Query: 11  IDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ID+ AL+ N  W   + L   ++   VVK +AYG   + IAPAL N     F V    EG
Sbjct: 9   IDIEALRANALWLKQHCL--GSKLMCVVKADAYGHDLKLIAPALSNIA-DGFAVAHCTEG 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
           ++LR   P A I VL G     E    +  +L   +++  Q+  Y  L       P   +
Sbjct: 66  LELRAINPTAPILVLEGTFDAAELNAAYQHDLTVALTNTWQVRDY--LARPLDQRPTVWV 123

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG +RLGLS  E      ++   +L Q +++ +H + AD   +   ++QL R   L 
Sbjct: 124 KVDTGMHRLGLSETELNALCRDN---RLPQDTVLFTHFSDADT-DAEKTALQLARLTRLG 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +K +  S A+S   L+ PN H    RPG SLYGG+   +    ++ V++   RI  IR
Sbjct: 180 ERHK-LMMSAANSPACLMHPNTHLDWVRPGYSLYGGSPLAHIEDNLRPVMSVYTRIHSIR 238

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               GE V YG      R S IA   IGYADGYP ++             G K ++    
Sbjct: 239 SLPVGECVGYGSTWCAERASKIATLPIGYADGYPRSIKS-----------GTKVWLHNQF 287

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P++G+++MD+   D+TD  + + GD ++++G  + L  +A  +  + Y+++ RI  R  
Sbjct: 288 APVVGRVSMDLLTIDVTDIPAAKAGDLVEVWGQHMTLHALANHNELSGYEIMARIPKRLP 347

Query: 367 K 367
           +
Sbjct: 348 R 348


>gi|52840976|ref|YP_094775.1| hypothetical protein lpg0739 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54296765|ref|YP_123134.1| hypothetical protein lpp0804 [Legionella pneumophila str. Paris]
 gi|81822627|sp|Q5X709|ALR_LEGPA RecName: Full=Alanine racemase
 gi|81823455|sp|Q5ZXJ2|ALR_LEGPH RecName: Full=Alanine racemase
 gi|52628087|gb|AAU26828.1| alanine racemase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53750550|emb|CAH11952.1| hypothetical protein lpp0804 [Legionella pneumophila str. Paris]
          Length = 357

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 189/372 (50%), Gaps = 39/372 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+ +AL +N   +  L+   +  A+VK NAYG G  ++AP L +  ++ F V  +EE
Sbjct: 6   RLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVACLEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + +R    +    +  G+    E  +  + +   V+    QL +   L+   + +P  +
Sbjct: 65  ALAIRALGVETPCILFQGVFSSDELSVAVENDFACVLHHAQQLEW---LIKTPLPYPIKV 121

Query: 127 --QVDTGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             +V+TG +RLG  + E         T    +K +G    +++HLACAD+P    N  Q+
Sbjct: 122 WVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKSIG----LMTHLACADEPHRPENQQQI 177

Query: 180 ERFRTL-ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH------PM 232
             F+ + I  ++  + S+A+S+ I+  P+    + RPGI LYG +   N++       P+
Sbjct: 178 SLFQEISIPGFR--QRSIANSAAIISFPDSQADVVRPGIMLYGVSPFANQNAHDLGLIPV 235

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++A   I  I    +   V YGG  K  + S I V A GY DGYP  +S    E +P
Sbjct: 236 MRFMSA---ISAIHDNPSFAQVGYGGTWKSDKPSRIGVVAAGYGDGYPRHIS----EKTP 288

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                   +++G  V I+G+++MDM   D+T+   IE+GD ++++G  + ++ +A ++GT
Sbjct: 289 V-------WVRGREVSIVGRVSMDMLTIDLTEHPDIEIGDEVELWGTHVLVERIAKSAGT 341

Query: 353 TNYDLLVRIGTR 364
             Y+LL +I  R
Sbjct: 342 VGYELLCQISER 353


>gi|117919166|ref|YP_868358.1| alanine racemase [Shewanella sp. ANA-3]
 gi|254802382|sp|A0KT33|ALR_SHESA RecName: Full=Alanine racemase
 gi|117611498|gb|ABK46952.1| alanine racemase [Shewanella sp. ANA-3]
          Length = 358

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 183/368 (49%), Gaps = 24/368 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I  +AL+NN   +   +  ++  AVVK N YG G   +A  L+ A    F +  +
Sbjct: 4   FPRAEISSSALQNNLAVLRQQASRSQVMAVVKANGYGHGLLNVANCLHTA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE ++LR    +AR+ +L G     +  ++   ++  V+    Q+     L    +S P 
Sbjct: 62  EEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEM---LEQATLSKPV 118

Query: 125 A--LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG++ ++    +        + +   +++H ACAD+P +H   VQ++ 
Sbjct: 119 TVWLKVDSGMHRLGVTPEQFTQVYARLMACDNVAKPIHLMTHFACADEPENHYTQVQMQT 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTA 238
           F  L +   G   +LA+S+G L  P       RPGI+LYG    T     +H +   +  
Sbjct: 179 FNQLTADLPGFR-TLANSAGALYWPKSQGDWIRPGIALYGVSPVTGDCGANHGLIPAMNL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +R+I +R   AG+ V YG      +D+ + V AIGY DGYP         ++P    G 
Sbjct: 238 VSRLIAVRDHKAGQPVGYGCYWTAKQDTRLGVVAIGYGDGYP--------RNAPE---GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+    +  VGD   ++G  + +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPIVGRVSMDMLTVDLGADATDLVGDEALLWGAALPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|253702117|ref|YP_003023306.1| alanine racemase [Geobacter sp. M21]
 gi|259710067|sp|C6E5Z6|ALR_GEOSM RecName: Full=Alanine racemase
 gi|251776967|gb|ACT19548.1| alanine racemase [Geobacter sp. M21]
          Length = 379

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 179/378 (47%), Gaps = 30/378 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL++N+  +   +       AVVK +AYG G + ++  L   GV  F V  + E
Sbjct: 8   VEIDLAALRHNFSLVQKRVPEGCGLLAVVKADAYGHGFQYVSEELEKLGVDAFAVAFLAE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLMSCGVSHPY 124
           GV+LR+      + +L GI+PG+E+ +   N+   + S+     L   +  + C      
Sbjct: 68  GVQLRMSGITRPVLILGGIYPGEERRLIGLNISTALFSLEQAAALDQAALEIKCYRKAHI 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSS-HVNSVQLER 181
            L+VDTG  RLG+   E  +F       K  +L  I SH A AD  DP       +Q ER
Sbjct: 128 HLKVDTGMGRLGVPYHEVPEFLAKLKQFKNLELEGIFSHFASADELDPEGIAFTRLQAER 187

Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQT 234
           F   +       Y      +A+S+ IL     +  L RPGI LYG   +       P Q 
Sbjct: 188 FNAAVEEARRQGYAPSYVHVANSAAILAQDLPYCNLARPGIILYGALPSGDFEGQVPSQP 247

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  ++R+ +++    G  +SYG +   T  +LIA   +GYADGY  +L+          
Sbjct: 248 VMRLKSRVAMLKWVEPGTSISYGRRYVATERALIASVPVGYADGYCRSLTN--------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALA 349
              G+  I+G    + G + MD  M D+T+   + VGD + + GPD     I  +++A  
Sbjct: 299 --KGEALIRGQRAKVAGTVCMDWIMLDVTNVKGVAVGDDVTLLGPDPMGDCISAEEMAEK 356

Query: 350 SGTTNYDLLVRIGTRYAK 367
           +GT  Y++L  I TR  +
Sbjct: 357 AGTIPYEVLCGIATRRVR 374


>gi|200389510|ref|ZP_03216121.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199601955|gb|EDZ00501.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 356

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAHSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|284006501|emb|CBA71762.1| alanine racemase (biosynthetic) [Arsenophonus nasoniae]
          Length = 361

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 185/367 (50%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +  ++ ++R  AVVK NAYG G  + A  + +     F V  + E + 
Sbjct: 8   IHRRALRHNLQRVREIASHSRIIAVVKANAYGHGLLETAHTVKDLA-DSFGVARISEAIA 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     E  I   + I  V+ S+ QL     L    +  P    ++
Sbjct: 67  LRENGISNPILLLEGFFDLAELPIITRHAIDIVVQSIEQL---ETLEQIKLEKPIKVWMK 123

Query: 128 VDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185
           +DTG +RLG   +EA + +      + + +   I+SH + AD+P      + QL  F   
Sbjct: 124 LDTGMHRLGFRPEEAAISYARLVACQNIQKPINIMSHFSRADEPGLPAATNQQLTCFNVF 183

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARI 242
           I    G E S+A+S+GILL P  +F   RPGI +YG +    K  K   +  V+T ++ +
Sbjct: 184 IKDKPG-EKSIAASAGILLWPASYFDWVRPGIMMYGASPQEGKQGKDFGLLPVMTLKSNL 242

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I IR+  AGE V YGG     +D+ + V AIGY DGYP         ++PS   G    I
Sbjct: 243 IAIRQHKAGEPVGYGGVWVSEQDTNLGVVAIGYGDGYP--------RNAPS---GTPILI 291

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G+++MDM   D+    + +VGD   ++G  + +++VA  +G ++Y+LL ++ 
Sbjct: 292 NGRKVPIVGRVSMDMISVDLGVGTNDKVGDEAIMWGDLLPVEEVAAYTGVSDYELLTKLT 351

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 352 SRVAMEY 358


>gi|161613692|ref|YP_001587657.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168820548|ref|ZP_02832548.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|161363056|gb|ABX66824.1| hypothetical protein SPAB_01417 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205342561|gb|EDZ29325.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320085692|emb|CBY95470.1| alanine racemase 2, catabolic [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 356

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++ S  L++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|154706770|ref|YP_001424314.1| alanine racemase, biosynthetic [Coxiella burnetii Dugway 5J108-111]
 gi|189027532|sp|A9KFM0|ALR_COXBN RecName: Full=Alanine racemase
 gi|154356056|gb|ABS77518.1| alanine racemase, biosynthetic [Coxiella burnetii Dugway 5J108-111]
          Length = 364

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 185/370 (50%), Gaps = 37/370 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I++TALK+N   + AL+  +    ++K N YG G  ++A AL +A    F V  ++E + 
Sbjct: 8   INVTALKHNLSQIKALAPKSLAWVMIKSNGYGHGLVRVAKALSDANA--FGVACIDEALT 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    ++ I V+ G +   E   F  + L  VI    Q++   K  +   S    L++D
Sbjct: 66  LREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEK-TNLTSSLSVWLKID 124

Query: 130 TGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           TG NRLG S++++        T +S  K +G    +++HLA AD+ +     +Q++RF +
Sbjct: 125 TGMNRLGFSVEQSPAVYNQLKTSSSIQKPIG----LMTHLADADNENKTFTELQIKRFFS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----------DKINKSHPMQT 234
           +     G   S+ +S+G    PN      RPGI LYG +          +KI K    + 
Sbjct: 181 VTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKK--FRP 237

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A+II I+     + V YG       D  IA+ +IGY DGYP         H+PS 
Sbjct: 238 VMTLSAKIIAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYP--------RHAPS- 288

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G + P++G+++MDM   D+    + +VGD + ++G  + ++ +A  +GT  
Sbjct: 289 --GTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIA 346

Query: 355 YDLLVRIGTR 364
           Y+LL +I  R
Sbjct: 347 YELLCKITQR 356


>gi|207856691|ref|YP_002243342.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206708494|emb|CAR32815.1| Alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 356

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++ S  L++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLNAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|62180365|ref|YP_216782.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224583706|ref|YP_002637504.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62127998|gb|AAX65701.1| alanine racemase 2, catabolic [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224468233|gb|ACN46063.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322714840|gb|EFZ06411.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 356

 Score =  149 bits (376), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++    GE V YGG+  +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSVGERVGYGGRYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|148360608|ref|YP_001251815.1| hypothetical protein LPC_2554 [Legionella pneumophila str. Corby]
 gi|226711052|sp|A5IGG9|ALR_LEGPC RecName: Full=Alanine racemase
 gi|148282381|gb|ABQ56469.1| hypothetical protein LPC_2554 [Legionella pneumophila str. Corby]
          Length = 357

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 189/372 (50%), Gaps = 39/372 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+ +AL +N   +  L+   +  A+VK NAYG G  ++AP L +  ++ F V  +EE
Sbjct: 6   RLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVACLEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + +R    +    +  G+    E  +  + +   V+    QL +   L+   + +P  +
Sbjct: 65  ALAIRALGVETPCILFQGVFSSDELSVAVENDFACVLHHAQQLEW---LIKTPLPYPIKV 121

Query: 127 --QVDTGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             +V+TG +RLG  + E         T    +K +G    +++HLACAD+P    N  Q+
Sbjct: 122 WVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKSIG----LMTHLACADEPHRPENQQQI 177

Query: 180 ERFRTL-ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH------PM 232
             F+ + I  ++  + S+A+S+ I+  P+    + RPGI LYG +   N++       P+
Sbjct: 178 SLFQEISIPGFR--QRSIANSAAIISFPDSQADVVRPGIMLYGVSPFANQNAHDLGLIPV 235

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++A   I  I    +   V YGG  K  + S I V A GY DGYP  +S    E +P
Sbjct: 236 MRFMSA---ISAIHDNPSFAQVGYGGTWKSDKPSRIGVVAAGYGDGYPRHIS----EKTP 288

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                   +++G  V I+G+++MDM   D+T+   +E+GD ++++G  + ++ +A ++GT
Sbjct: 289 V-------WVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGT 341

Query: 353 TNYDLLVRIGTR 364
             Y+LL +I  R
Sbjct: 342 VGYELLCQISER 353


>gi|146305288|ref|YP_001185753.1| alanine racemase [Pseudomonas mendocina ymp]
 gi|145573489|gb|ABP83021.1| alanine racemase [Pseudomonas mendocina ymp]
          Length = 362

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 186/369 (50%), Gaps = 36/369 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     LSG AR  AVVK +AYG G  + A AL  +    F V  +EE
Sbjct: 5   RALIDLDALRHNYQLARELSG-ARALAVVKADAYGHGAVRCAQAL-QSEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + LR    +A I +L G     E  + D + L  V+ +  Q+     +    +S P  L
Sbjct: 63  ALALREAGIRAPILLLEGFFEADELALIDQHELWCVVHAQWQI---EAIEQARLSRPLTL 119

Query: 127 --QVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             ++D+G +R+GL     QEA  +     + K+G++ +++SH A AD+P       QL  
Sbjct: 120 WLKLDSGMHRVGLHPAEYQEA--YRRLLASGKVGKI-VLMSHFARADEPECERTVEQLAV 176

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLT------RPGISLYGGT---DKINKSHPM 232
           F+         E SL +S  +L  P   F+ T      RPGI LYG T       ++  +
Sbjct: 177 FQQ-ARQGLAAEVSLCNSPAVLGWPQL-FEKTGASDWVRPGIMLYGATPFEQAQEQAARL 234

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q V+T E+++I +R+  AGE V YG +    R + + V AIGYADGYP         H+P
Sbjct: 235 QPVMTLESKVISVRELPAGEPVGYGARFVSERPTRVGVVAIGYADGYP--------RHAP 286

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
           +   G    + G +  ++G+++MDM   D+TD     +G  ++++G  +   DVA+A+G+
Sbjct: 287 T---GTPVAVDGQLTRLIGRVSMDMLTVDLTDLPQAGLGSRVELWGKQVLASDVAMAAGS 343

Query: 353 TNYDLLVRI 361
             Y +   +
Sbjct: 344 IPYQIFCNL 352


>gi|149377612|ref|ZP_01895350.1| alanine racemase [Marinobacter algicola DG893]
 gi|149358085|gb|EDM46569.1| alanine racemase [Marinobacter algicola DG893]
          Length = 366

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 176/366 (48%), Gaps = 22/366 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +ID  AL++N+     L+  AR  AV+K + YG G  ++A AL +   + F V  +EE +
Sbjct: 8   RIDTRALRHNYRLACRLASPARAMAVIKADGYGHGIREVARALASDAPK-FAVACLEEAL 66

Query: 70  KLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
            +R       + +L G+H  G            V+ S  QL +  +        P   ++
Sbjct: 67  AIREAGVDHPVVLLQGMHSAGDVATCVCEGFEVVVHSGYQLDWLDQ----ADERPTVWVK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFRTLI 186
           V+TG NRLG +     D          G+ ++  ++H ACADD S      Q   F   +
Sbjct: 123 VNTGMNRLGFAPSVLADVMARLDTIGAGETVAGFVTHFACADDISRDDTDQQTRVFSEAV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
             +  +E S ++S+   L     F  TRPGI LYG +  + K+ P   ++ V+T EA + 
Sbjct: 183 VDWPKLEKSASNSAAHFLPAQPSFDWTRPGIMLYGASPTLGKTGPELGLEAVMTLEAPLT 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R    GE V YG      +++ + + AIGY DGYP   +G D+            ++ 
Sbjct: 243 AVRTLKPGESVGYGYSWTAIQETRMGIVAIGYGDGYPRH-AGTDT----------PAWVG 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  + ++G+++MDM   D+T +     GD ++++G ++ +D+VA  +GT  Y+LL  I  
Sbjct: 292 GNRIRLIGRVSMDMLAVDLTGAPEACPGDLVELWGRNVSVDEVAQHAGTIGYELLTGITA 351

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 352 RVPRLY 357


>gi|94500388|ref|ZP_01306920.1| alanine racemase [Oceanobacter sp. RED65]
 gi|94427423|gb|EAT12401.1| alanine racemase [Oceanobacter sp. RED65]
          Length = 365

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 182/373 (48%), Gaps = 33/373 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+   ++L+  +++ AVVK NAYG G    A AL    V  F V S++E ++
Sbjct: 9   IDLEALRSNYRLADSLAPQSQSIAVVKANAYGHGAVPCAKAL-EPIVPAFAVASIDEAIE 67

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHPYA 125
           LR    +  I +L G    G+ +I  +     +I +   L F      K + C     + 
Sbjct: 68  LREGGIRKPILLLEGPFSFGEVQIASEHEFWLMIENHNHLAFIEQCEHKKLICKPLKCW- 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQL 179
           L++D+G +RLG      + F   +  +KL   S++       +H A AD         Q+
Sbjct: 127 LKMDSGMHRLGF-----MPFEIAAIYQKLKSTSIVHDEIVVATHFATADVEGDAFVKEQI 181

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVV 236
           + F   IS   G   SL +S+G++  P  H    RPG  LYG +      H    +Q+V+
Sbjct: 182 DCFNEAISGL-GCLTSLCNSAGVMAWPQAHGSWNRPGFMLYGASPFELPQHNDKTLQSVM 240

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T ++++I +R    GE V YG      RDS IA   +GY DGYP         H+ +   
Sbjct: 241 TLQSKVISVRNVKKGEAVGYGKTWIAQRDSRIATVTVGYGDGYP--------RHAKN--- 289

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    +      + G+++MDM   D+TD  S+ +GD +  +G D+ +++VA  SGT  Y+
Sbjct: 290 GTPILVNNQRCKLAGRVSMDMITVDVTDVGSVNIGDDVICWGKDLPINEVAHYSGTIGYE 349

Query: 357 LLVRIGTRYAKFY 369
           L+ R+  R ++ Y
Sbjct: 350 LMTRMPLRPSRIY 362


>gi|3913032|sp|O30746|ALR2_KLEAE RecName: Full=Alanine racemase, catabolic
 gi|2360966|gb|AAC38140.1| alanine racemase [Klebsiella aerogenes]
          Length = 356

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 178/369 (48%), Gaps = 42/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL+ N   +   +  +R  AV KDNAYG G  ++  AL  A    F + ++EE + 
Sbjct: 9   IDLLALRQNLQIVRRAAPGSRLWAVDKDNAYGHGVARVWSALSAA--DGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQV 128
           LR    +  I +L G     E  + D   +P  +SV        L    +  P    L+V
Sbjct: 67  LREQGWKGPILLLEGFFHADELAVLDQYRLP--TSVHSNWQIKALQQAKLRAPLDIYLKV 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++G NRLG   +      H  + +      +G+++L+ SH A A++P   V     E  R
Sbjct: 125 NSGMNRLGFMPER----VHTVWQQLRAISNVGEMTLM-SHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTV 235
            +    +G++   SLA+S+  L  P  HF   RPGI LYG +      D  N    ++ V
Sbjct: 175 RIEQAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTG--LKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++    GE + YGG  + T++  I + A GYADGYP          +PS  
Sbjct: 233 MTLRSEIIGVQNLRPGEAIGYGGLYRTTQEQRIGIVACGYADGYPRV--------APS-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y
Sbjct: 283 -GTPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALAPR 350


>gi|119471275|ref|ZP_01613778.1| alanine racemase 1, PLP-binding, biosynthetic [Alteromonadales
           bacterium TW-7]
 gi|119445741|gb|EAW27024.1| alanine racemase 1, PLP-binding, biosynthetic [Alteromonadales
           bacterium TW-7]
          Length = 359

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 185/367 (50%), Gaps = 23/367 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+LTAL +N   +   + N++  AV+K NAYG G  KIA  L +A    F V  ++E +
Sbjct: 7   EINLTALAHNLAQVKRFAPNSKVMAVLKANAYGHGLVKIAQHLNDADA--FAVARIDEAL 64

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR       I +L G     +  I+   N   +I    QL    +         + L+V
Sbjct: 65  ALRAGGLTKPIVLLEGFFNKDDLPILLANNFQTIIHDEYQLAALEEAELEAPLLCW-LKV 123

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLI 186
           +TG +RLG++  E  D  +    K     + +  ++H ACADD ++   + Q+ +F  L+
Sbjct: 124 NTGMHRLGIA-PEQFDEFYKRLQKTPNANNTVNLMTHFACADDVNNTKTAQQISQFDCLV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARII 243
           ++       L++S+GI+  PN H    RPG+ LYG +   N   + H ++ V+    R+I
Sbjct: 183 NNINQAHC-LSNSAGIIAWPNAHGDWVRPGLMLYGVSPMANALGEQHQLKPVMRLTTRVI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   A E V YGG+ K  + + +AV A+GY DGYP       ++    V +G + +  
Sbjct: 242 AVRHVPANEAVGYGGRWKSDKATQLAVVAMGYGDGYP-----RHAKEGTPVVIGKQRY-- 294

Query: 304 GYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
                I+G + MDM   DI  +  +I+VGD + ++GP++ ++++A  + T  Y+LL  I 
Sbjct: 295 ----GIVGSVAMDMISVDIGQNEHNIKVGDRVTMWGPELPVEEIAQCADTIPYELLCNIT 350

Query: 363 TRYAKFY 369
            R +  Y
Sbjct: 351 PRVSYEY 357


>gi|307823471|ref|ZP_07653700.1| alanine racemase [Methylobacter tundripaludum SV96]
 gi|307735456|gb|EFO06304.1| alanine racemase [Methylobacter tundripaludum SV96]
          Length = 362

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 179/364 (49%), Gaps = 30/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++L A+++N   + + + +A+  AV+K N YG G  +IA AL  A    F V  V+EG++
Sbjct: 9   VNLDAVQHNLSKVRSCAPDAKVMAVIKANGYGHGMLRIAEALQQADA--FAVARVDEGIR 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    + RI VL G    +E   +    L  V+ S+ QL  +      G    + L++D
Sbjct: 67  LRKAGFKHRIAVLEGFTCAEELDELLHYQLDAVVHSLTQLEIFEAETKSGTCAVW-LKLD 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQLERFR 183
           +G NRLG   +E      +S  ++L Q +L+      ++H A ADD +      Q+  F 
Sbjct: 126 SGMNRLGFKAKE-----FDSVYQRLTQCALVKQPISLMTHFASADDINDDKTLRQINLFN 180

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEA 240
             IS Y G E S+A+S+GIL          RPG+ L+G +   D   +   ++ V+   +
Sbjct: 181 ETISGYSG-ERSMANSAGILGWEQSLTDWVRPGVMLHGISPFPDSTGRQLGLRPVMELHS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +++   G+ V YGG     + + + V AIGY DGYP               +G   
Sbjct: 240 RLIAVKQIEVGDTVGYGGSWICEKPTTLGVVAIGYGDGYPRYAK-----------VGTPV 288

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  VP++G+++MDM   D+      + GD + ++G  + ++++A  + T  Y L+  
Sbjct: 289 LVNGRRVPLIGRVSMDMITVDLETEGHAKPGDLVTLWGEGLPVEEIARCADTIPYTLVCG 348

Query: 361 IGTR 364
           +  R
Sbjct: 349 VTQR 352


>gi|205352531|ref|YP_002226332.1| D-amino acid dehydrogenase-Alanine racemase fusion protein
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205272312|emb|CAR37191.1| D-amino acid dehydrogenase-Alanine racemase fusion protein
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326627589|gb|EGE33932.1| D-amino acid dehydrogenase-Alanine racemase fusion protein
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 793

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 442 IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 498

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 499 EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 555

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 556 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 609

Query: 182 FRTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++ S  L++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 610 MRRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 669

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 670 MTLSSEIIGVQTLNAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 719

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 720 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 778

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 779 ELLCAVAPR 787


>gi|226326592|ref|ZP_03802110.1| hypothetical protein PROPEN_00442 [Proteus penneri ATCC 35198]
 gi|225205017|gb|EEG87371.1| hypothetical protein PROPEN_00442 [Proteus penneri ATCC 35198]
          Length = 363

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 180/363 (49%), Gaps = 25/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N+  +   + ++   AVVK NAYG G  + A  L +     F V  + E + 
Sbjct: 8   IDRRALRHNFQHVRDYAPHSHLIAVVKANAYGHGLLETAYTLMD-NADCFGVARIGEALT 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  I   N I  V+ S  QL     L    +  P    ++
Sbjct: 67  LRSGGIVKPILLLEGFFDIADLPILVVNHIETVVHSQEQL---EALEQANLDEPVKVWMK 123

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185
           +DTG +RLG+  ++A  F    S  K + Q   I+SH + AD+P        Q+  F+  
Sbjct: 124 IDTGMHRLGIRPEDAQAFYLRLSACKNVQQPVNIVSHFSRADEPDVPEATQKQISLFQDF 183

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEAR 241
           I    G + S+++S+GIL  P  H+Q  RPGI  YG    G ++  K   +   +T +  
Sbjct: 184 IQDKAG-DKSISASAGILFWPQVHYQWVRPGIITYGISPTGDERTGKDFGLTPAMTLKTS 242

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +RK  AGE V YGG     +D+ + V AIGY DGYP +        +PS   G   +
Sbjct: 243 LIAVRKHKAGEPVGYGGTWVSEKDTYLGVIAIGYGDGYPRS--------APS---GTPVW 291

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+   L   VGD   ++G  + ++++A  SG + Y+L+ ++
Sbjct: 292 INGRKVPIVGRVSMDMISVDLGTELIDSVGDEAILWGDVLPVEEIAKYSGISAYELITKL 351

Query: 362 GTR 364
            +R
Sbjct: 352 TSR 354


>gi|218553745|ref|YP_002386658.1| alanine racemase [Escherichia coli IAI1]
 gi|218360513|emb|CAQ98069.1| alanine racemase 2, PLP-binding [Escherichia coli IAI1]
          Length = 356

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 182/371 (49%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    + +I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGQILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISSAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGAVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|197263989|ref|ZP_03164063.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242244|gb|EDY24864.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 356

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 181/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++ S  L++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+       +G  ++++G +IK+DDVA ASGT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLMPCPQAGIGTPVELWGKEIKVDDVASASGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|213970669|ref|ZP_03398794.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato T1]
 gi|301382556|ref|ZP_07230974.1| alanine racemase [Pseudomonas syringae pv. tomato Max13]
 gi|302063077|ref|ZP_07254618.1| alanine racemase [Pseudomonas syringae pv. tomato K40]
 gi|302133576|ref|ZP_07259566.1| alanine racemase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924503|gb|EEB58073.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato T1]
          Length = 357

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 181/370 (48%), Gaps = 26/370 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  R  AV+K +AYG G   +A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARDSSGG-RALAVIKADAYGHGAVHVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A I +L G     E  +I + +L  V+ ++ QL    +    G      L
Sbjct: 63  ALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHAIWQLEAIEQAQP-GKPLTVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG +R+GL   E                 +++SH +CAD+ +S  +  Q+  F    
Sbjct: 122 KLDTGMHRVGLHPSEYRAAYQRLLATGKVPRVVLMSHFSCADELNSACSDQQVAVFE--- 178

Query: 187 SHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAEA 240
           +  +G+  E SL +S  ++  PN     +R GI LYG T   +++ P+    Q V+T E+
Sbjct: 179 AARQGLVAETSLKNSPAVMGWPNIPSDWSRTGIMLYGAT-PFDQTQPLAERLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG      R   I V A+GYADGYP         H+P+   G   
Sbjct: 238 KVISVRELPAGEAVGYGATFVSERPLRIGVVAMGYADGYP--------RHAPT---GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+TD     +G  +Q++G  +   +VA  +GT  Y +   
Sbjct: 287 LIDGQRSRLLGRVSMDMLCVDLTDVPQAGLGSRVQLWGKGVLASEVATQAGTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|198244745|ref|YP_002215339.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197939261|gb|ACH76594.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326623083|gb|EGE29428.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 356

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 182/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRVMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++ S  L++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   +GE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLNSGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|87300882|ref|ZP_01083724.1| alanine racemase [Synechococcus sp. WH 5701]
 gi|87284753|gb|EAQ76705.1| alanine racemase [Synechococcus sp. WH 5701]
          Length = 403

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 188/385 (48%), Gaps = 28/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +H  +   +++D TA+++N  ++   L+ ++   AVVK + YG G   +A A    G   
Sbjct: 21  LHPRQRAWVEVDETAIEHNARALGRWLAPDSSLMAVVKADGYGHGAAPVARAAMAGGATS 80

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117
             V +++EG++LR    +A + V+   IHP + +   + +L+P IS + +      L S 
Sbjct: 81  LGVATLQEGIELRQAGLEAPVLVMGNLIHPEELRSCLEWDLMPTISGMREALLCQNLASG 140

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHV 174
            G S    L++DTG  RLG+   + +             L+ + SHLA AD P      +
Sbjct: 141 SGRSMALHLKLDTGMARLGVDWGDGVRLLQALLGLDAVLLAGVYSHLADADAPDPGGGGL 200

Query: 175 NSVQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
            ++Q +RF +++     +  +     LA+S+G L     H+ L R G++LYG     + S
Sbjct: 201 TALQQQRFESVLRGAGELGLATGVRHLANSAGTLRCRRLHYDLVRVGLALYGQAPAEHLS 260

Query: 230 H--PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           H  P+Q  ++  AR+ LIR+  AG  VSYG +    R S +AV  IGYADG P  LS   
Sbjct: 261 HTVPLQPAMSVRARVCLIREVPAGVGVSYGHRYTTRRPSRLAVVTIGYADGVPRLLS--- 317

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             +   V   G+   +      +G ITMD  + D T++  +EVG  + + G D    I  
Sbjct: 318 --NQLEVLFAGRRLAQ------VGAITMDQLLIDATEAPQLEVGSVVTLLGDDGGERITP 369

Query: 344 DDVALASGTTNYDLLVRIGTRYAKF 368
            D A ASGT  +++L     R  + 
Sbjct: 370 QDWAQASGTIPWEILCGFKHRLPRL 394


>gi|16760692|ref|NP_456309.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29141550|ref|NP_804892.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213162931|ref|ZP_03348641.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213420203|ref|ZP_03353269.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213426623|ref|ZP_03359373.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213648191|ref|ZP_03378244.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|20137367|sp|Q8Z688|ALR2_SALTI RecName: Full=Alanine racemase, catabolic
 gi|25291652|pir||AC0723 alanine racemase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16502989|emb|CAD05485.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137177|gb|AAO68741.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 356

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 181/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
            LL  +  R
Sbjct: 342 GLLCAVAPR 350


>gi|213026678|ref|ZP_03341125.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 356

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 181/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
            LL  +  R
Sbjct: 342 GLLCAVAPR 350


>gi|204927774|ref|ZP_03218975.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204323116|gb|EDZ08312.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 356

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 181/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGAILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   +            + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERVQTVWQQLRTMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|17229950|ref|NP_486498.1| alanine racemase [Nostoc sp. PCC 7120]
 gi|17131550|dbj|BAB74157.1| alanine racemase [Nostoc sp. PCC 7120]
          Length = 401

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 178/378 (47%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL +N   +   LS   +  AVVK +AYG G   +A     AG     V +V E
Sbjct: 34  VEIDLEALSHNVQQLKQFLSPRTQLMAVVKADAYGHGAVTVAQTALQAGASCLGVATVPE 93

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---- 122
           G++LR    QA I +L   H P Q + I    L   I S  Q   +S  +   + H    
Sbjct: 94  GIQLREAGIQAPILILGATHTPEQIQAIAQWQLQATIGSPKQALIFSNTLET-IQHDSPI 152

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
           P  +++DTG +RLG + Q+A +F      ++L  L +  + SHLA AD P   +   Q  
Sbjct: 153 PVHIKLDTGMSRLGTNWQQAGEFVQ--LVERLPHLDIASVYSHLATADSPDPGIMEEQHR 210

Query: 181 RFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
           RF   I+  K  GI+     LA+S+  L  P  H+ + R G+++YG      +     ++
Sbjct: 211 RFEEAIAQIKTLGIKIPSLHLANSAATLADPRLHYDMVRVGLAVYGLYPAPHLQNKISLK 270

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +ARI  ++   AG  VSYG Q     +  +AV +IGYADG P  LS         
Sbjct: 271 PVIQVQARITHVKTIAAGTGVSYGHQFIAPHEMRLAVVSIGYADGVPRNLSN-------- 322

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I+G  VP +G ITMD  M D +    ++ G+ + + G      I  DD A A
Sbjct: 323 ---KMQVLIRGQRVPQIGAITMDQLMIDASALPDLQEGEIVTLLGKQGKEKITADDWAEA 379

Query: 350 SGTTNYDLLVRIGTRYAK 367
             T ++++L     R  +
Sbjct: 380 LNTISWEVLCGFKHRLPR 397


>gi|20137211|sp|Q8YU96|ALR_ANASP RecName: Full=Alanine racemase
          Length = 386

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 178/378 (47%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL +N   +   LS   +  AVVK +AYG G   +A     AG     V +V E
Sbjct: 19  VEIDLEALSHNVQQLKQFLSPRTQLMAVVKADAYGHGAVTVAQTALQAGASCLGVATVPE 78

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---- 122
           G++LR    QA I +L   H P Q + I    L   I S  Q   +S  +   + H    
Sbjct: 79  GIQLREAGIQAPILILGATHTPEQIQAIAQWQLQATIGSPKQALIFSNTLET-IQHDSPI 137

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
           P  +++DTG +RLG + Q+A +F      ++L  L +  + SHLA AD P   +   Q  
Sbjct: 138 PVHIKLDTGMSRLGTNWQQAGEFVQ--LVERLPHLDIASVYSHLATADSPDPGIMEEQHR 195

Query: 181 RFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
           RF   I+  K  GI+     LA+S+  L  P  H+ + R G+++YG      +     ++
Sbjct: 196 RFEEAIAQIKTLGIKIPSLHLANSAATLADPRLHYDMVRVGLAVYGLYPAPHLQNKISLK 255

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +ARI  ++   AG  VSYG Q     +  +AV +IGYADG P  LS         
Sbjct: 256 PVIQVQARITHVKTIAAGTGVSYGHQFIAPHEMRLAVVSIGYADGVPRNLSN-------- 307

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I+G  VP +G ITMD  M D +    ++ G+ + + G      I  DD A A
Sbjct: 308 ---KMQVLIRGQRVPQIGAITMDQLMIDASALPDLQEGEIVTLLGKQGKEKITADDWAEA 364

Query: 350 SGTTNYDLLVRIGTRYAK 367
             T ++++L     R  +
Sbjct: 365 LNTISWEVLCGFKHRLPR 382


>gi|168233845|ref|ZP_02658903.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194471678|ref|ZP_03077662.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194458042|gb|EDX46881.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332109|gb|EDZ18873.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 356

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 181/369 (49%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++    GE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSVGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGY 341

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 342 ELLCAVAPR 350


>gi|260867595|ref|YP_003233997.1| alanine racemase 2, PLP-binding [Escherichia coli O111:H- str.
           11128]
 gi|257763951|dbj|BAI35446.1| alanine racemase 2, PLP-binding [Escherichia coli O111:H- str.
           11128]
 gi|323179296|gb|EFZ64866.1| alanine racemase [Escherichia coli 1180]
          Length = 356

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 182/371 (49%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISSAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IEQVA---EGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|197119823|ref|YP_002140250.1| alanine racemase [Geobacter bemidjiensis Bem]
 gi|254802364|sp|B5EBG2|ALR_GEOBB RecName: Full=Alanine racemase
 gi|197089183|gb|ACH40454.1| alanine racemase [Geobacter bemidjiensis Bem]
          Length = 379

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 177/378 (46%), Gaps = 30/378 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL++N+  +   +       AVVK +AYG G + ++  L   GV  F V  + E
Sbjct: 8   VEIDLAALRHNFSLVQKRVPEGCGLLAVVKADAYGHGFQYVSEELEKLGVDAFAVAFLAE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLMSCGVSHPY 124
           GV+LR+      + +L GI+PG+E+     N+   + S+     L   +  + C      
Sbjct: 68  GVQLRMSGITRPVLILGGIYPGEERRCIGLNISTALFSLEQAAALDQAALEIKCYRKAHI 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSS-HVNSVQLER 181
            L+VDTG  RLG+   E  +F       K  +L  I SH A AD  DP       +Q ER
Sbjct: 128 HLKVDTGMGRLGVPYHEVPEFLAKLKQFKNLELEGIFSHFASADELDPEGIAFTKLQAER 187

Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQT 234
           F   +       Y      +A+S+ IL     +  L RPGI LYG   +       P Q 
Sbjct: 188 FNAAVEEARRQGYAPTYVHVANSAAILTQDLPYCNLARPGIILYGALPSGDFEGQVPSQP 247

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  ++R+ +++    G  +SYG +      +LIA   +GYADGY  +L+          
Sbjct: 248 VMRLKSRVAMLKWVEPGTSISYGRRYVAAERALIASVPVGYADGYCRSLTN--------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALA 349
              G+  I+G    + G + MD  M D+T+   + VGD + + GPD     I  +++A  
Sbjct: 299 --KGEALIRGQRAKVAGTVCMDWIMLDVTNVKGVAVGDDVTLLGPDPMGDCISAEEMAEK 356

Query: 350 SGTTNYDLLVRIGTRYAK 367
           +GT  Y++L  I TR  +
Sbjct: 357 AGTIPYEVLCGIATRRVR 374


>gi|323187415|gb|EFZ72724.1| alanine racemase [Escherichia coli RN587/1]
          Length = 356

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SLA+S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLANSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|331652220|ref|ZP_08353239.1| alanine racemase [Escherichia coli M718]
 gi|331050498|gb|EGI22556.1| alanine racemase [Escherichia coli M718]
          Length = 356

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISSAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCSLALR 350


>gi|15602278|ref|NP_245350.1| alanine racemase [Pasteurella multocida subsp. multocida str. Pm70]
 gi|20137233|sp|Q9CNL5|ALR_PASMU RecName: Full=Alanine racemase
 gi|12720664|gb|AAK02497.1| Alr [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 360

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 187/371 (50%), Gaps = 32/371 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK+N  ++   +  ++  AVVK NAYG G   ++ A+    V  F V  +EE +
Sbjct: 9   KISSVALKHNIQTIKQKAPQSKIIAVVKANAYGHGVVFVSAAVEEL-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G    ++  +I   N+  V+ +V QL     L +  V +P    L
Sbjct: 68  SLRSNGITKPILLLEGFFCDKDLPVIAINNIQTVVHNVEQL---EALKAAKVPNPIKVWL 124

Query: 127 QVDTGFNRLGLSLQEALDFTH-----NSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           ++DTG +RLG++L++   F        + + ++G     +SH + AD+       +QL R
Sbjct: 125 KIDTGMHRLGVALEDVEYFYQALRDSENVDPQIG----FVSHFSRADELECDYTKLQLTR 180

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           F     +  G E S+A+S GIL   + H    RPGI +YG    IN   + + +  V+T 
Sbjct: 181 FLNATQNKAG-EKSIAASGGILFWESSHLDWIRPGIIMYG-ISPINVPAQEYDLTPVMTL 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I I++   GE V YGG     +D+ I V AIGY DGYP  +        P+   G 
Sbjct: 239 TSSLIAIKQHKKGEPVGYGGIWVSDKDTKIGVVAIGYGDGYPRDI--------PT---GT 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+      +VGD + ++G ++ ++++A  SG  +Y+L+
Sbjct: 288 PVYLNGRRVPIVGRVSMDMLTVDLGAEAQDKVGDEVILWGKELPIEEIADISGVISYELI 347

Query: 359 VRIGTRYAKFY 369
            ++  R    Y
Sbjct: 348 TKLTPRVLTEY 358


>gi|83644553|ref|YP_432988.1| alanine racemase [Hahella chejuensis KCTC 2396]
 gi|123534099|sp|Q2SLB1|ALR_HAHCH RecName: Full=Alanine racemase
 gi|83632596|gb|ABC28563.1| alanine racemase [Hahella chejuensis KCTC 2396]
          Length = 374

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 187/382 (48%), Gaps = 39/382 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N   +N+++ NAR AAV+K +AYG G  +IA AL     +   V   +E
Sbjct: 5   RALIDLDALRHNIRLLNSIAHNARCAAVIKADAYGHGAVEIARALKGEAPK-LAVACYDE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDT----NLIPVISSVPQLTFYSKLMSCGVSHP 123
            V LR       + VL G +  +E  + D+    ++  V+  + QL   S++     + P
Sbjct: 64  AVSLREAGVTTPLLVLEGFYSSEE--LADSTRWCDIEWVVHDMEQLDMLSEVAPLRKAGP 121

Query: 124 YA------LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ---LSLI--ISHLACADDPSS 172
            +      ++++TG NRLGL L +     H    +KL Q   LS+I  ++H ACAD+  S
Sbjct: 122 DSTRMQTWIKLNTGMNRLGLPLNK---LAH--VAEKLQQFPGLSVIGLMTHFACADELDS 176

Query: 173 HVNSVQLERFRTLI--SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKIN 227
            +   Q   F+  +  +   G   S A+S+ +L  P  H    RPGI++YG +   DK  
Sbjct: 177 LLQQRQWRAFQAGMQAAGANGWSYSSANSAALLQYPETHLDWVRPGIAMYGASPMADKTG 236

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+T E+R+I  R+  AG+ + YG        + + V A+GY DGYP  +    
Sbjct: 237 ADFGLKPVMTFESRLIATRELQAGDSIGYGAAWTADAPTRMGVVAVGYGDGYPRQMQN-- 294

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
                    G    + G    I+G+++MDM   DI+      +G  ++++G  +  D+VA
Sbjct: 295 ---------GAPVAVCGKRTKIIGRVSMDMLTVDISHIPEARIGSEVELWGGTVSADEVA 345

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             + T +Y L   + +R  + Y
Sbjct: 346 GYASTISYTLFTGMTSRVPRVY 367


>gi|215486418|ref|YP_002328849.1| alanine racemase [Escherichia coli O127:H6 str. E2348/69]
 gi|312966424|ref|ZP_07780646.1| alanine racemase [Escherichia coli 2362-75]
 gi|215264490|emb|CAS08857.1| alanine racemase 2, PLP-binding [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288877|gb|EFR16775.1| alanine racemase [Escherichia coli 2362-75]
          Length = 356

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SLA+S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLANSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G +   +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVLTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|90417095|ref|ZP_01225023.1| alanine racemase [marine gamma proteobacterium HTCC2207]
 gi|90331111|gb|EAS46367.1| alanine racemase [marine gamma proteobacterium HTCC2207]
          Length = 358

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 178/366 (48%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+    +L+  ++T  +VK NAYG G  K++ AL +     F V  +EE ++
Sbjct: 9   IDLQALRHNYELAQSLAPKSKTIPMVKANAYGHGAIKVSQALSDIA-PAFGVACIEEALE 67

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YALQV 128
           LR    +  I +L G     E  +  T    V+    Q      +++  ++ P    L V
Sbjct: 68  LRDTGIKQPILLLEGTFEATELKLAATKGFWVMVENHQQK--EAILNADLALPLNVWLGV 125

Query: 129 DTGFNRLGLSLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           DTG +RLG    E  D   T NS ++ + Q  +  SH ACAD+  S     Q++ F+   
Sbjct: 126 DTGMHRLGFQPGEIADIYKTLNS-SRNISQPIVFTSHFACADNLDSDSTLKQIQTFKAC- 183

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +    ++ SLA+S+ IL  P    +  RPG  LYG +        +  ++ V++ E+ +I
Sbjct: 184 APVTALQ-SLANSAAILAWPKAQREWQRPGYMLYGNSPFAVAQENADQLKPVMSFESAVI 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V Y       R+S IA   +GY DGYP            +   G    I 
Sbjct: 243 SLRTIAAGESVGYTANWTAERESTIATITVGYGDGYPR-----------NAINGTPVLIN 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G   P++G+++MDM   D+T    + +GD   ++GP++ +++VA    T  Y+LL R+  
Sbjct: 292 GIRCPLVGRVSMDMITVDVTALSEVAIGDKAVLWGPELPVNEVASYCDTIGYELLTRMPE 351

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 352 RVPRVY 357


>gi|332759341|gb|EGJ89649.1| alanine racemase [Shigella flexneri 2747-71]
 gi|332767413|gb|EGJ97607.1| alanine racemase [Shigella flexneri 2930-71]
          Length = 356

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQSDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISGAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTACDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GAPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|24112577|ref|NP_707087.1| alanine racemase [Shigella flexneri 2a str. 301]
 gi|30062707|ref|NP_836878.1| alanine racemase [Shigella flexneri 2a str. 2457T]
 gi|24051477|gb|AAN42794.1| alanine racemase 2 [Shigella flexneri 2a str. 301]
 gi|30040955|gb|AAP16685.1| alanine racemase 2 [Shigella flexneri 2a str. 2457T]
 gi|281600603|gb|ADA73587.1| Alanine racemase [Shigella flexneri 2002017]
 gi|313649368|gb|EFS13799.1| alanine racemase [Shigella flexneri 2a str. 2457T]
 gi|332760272|gb|EGJ90562.1| alanine racemase [Shigella flexneri K-671]
 gi|333019431|gb|EGK38714.1| alanine racemase [Shigella flexneri K-304]
          Length = 356

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQSDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GAPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|149907726|ref|ZP_01896473.1| alanine racemase [Moritella sp. PE36]
 gi|149809396|gb|EDM69325.1| alanine racemase [Moritella sp. PE36]
          Length = 357

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 182/368 (49%), Gaps = 26/368 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I L +L++N   +  ++ +++  AVVK NAYG G   +A AL +  V  F V  VEE +
Sbjct: 7   EICLQSLQHNVQQIKNIAPHSKIMAVVKANAYGHGLLAVASALTD--VDAFAVARVEEAL 64

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YALQ 127
            LR       I +L G     E  I   N I     + Q     +L    +  P    L+
Sbjct: 65  TLRSGGIVKPILLLEGFFSTDELPILVANNIQTSVHIEQQ--LDELEQADLEAPIHVWLK 122

Query: 128 VDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +DTG +RLG+   + + A++   N  N  + Q + +++H +CAD+    +   Q+  F  
Sbjct: 123 MDTGMHRLGIRPDNCKRAIERLKN--NPNVVQPARLMTHFSCADEADPSITQRQINIFDE 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241
           L++  +G E S+A+S+G+L  P+ H    RPGI LYG +  I  +   H ++ V+T    
Sbjct: 181 LVAGEEG-EHSIANSAGVLAWPSAHRDWIRPGIMLYGVSPMIGATAVEHDLKPVMTLTTD 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +     GE   YGG    + D+ + V A+GY DGYP     +  E +P         
Sbjct: 240 LIAVHDIKKGETTGYGGIWSASTDTRLGVVAVGYGDGYPR----MAPEGTPV-------L 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G +VPI+G+++MDM   D+      +VGD + ++G  +  + VA   GT  Y+L+ ++
Sbjct: 289 INGRIVPIVGRVSMDMLTVDLGVDCQDKVGDKVIMWGAGLPAELVAEHIGTIAYELVTKL 348

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 349 TQRVTLKY 356


>gi|302184903|ref|ZP_07261576.1| alanine racemase [Pseudomonas syringae pv. syringae 642]
          Length = 357

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 186/374 (49%), Gaps = 34/374 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A + +L G     E  +I + +L  V+ +  QL    +    G      L
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELALIVEHDLWTVVHATWQLEAIEQ-AHLGKPITVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLERF 182
           ++DTG +R+GL   E       ++ + L  G+++ I+  SH + AD+ +S  +  QL  F
Sbjct: 122 KLDTGMHRVGLHPHE----YQAAYQRLLATGKVARIVLMSHFSRADELNSGCSDEQLAVF 177

Query: 183 RTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVV 236
            T     KG+  E SL +S  +L  P      +RPGI LYG T    + HP+    Q V+
Sbjct: 178 ETF---RKGLAAETSLKNSPAVLGWPQIPSDWSRPGIMLYGAT-PFEQVHPLADRLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E++II +R+   GE V YG      R S I V A+GYADGYP         H+P+   
Sbjct: 234 TLESKIISVRELPVGEPVGYGATFVCDRPSRIGVVAMGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  + T  Y+
Sbjct: 283 GTPVQIDGQPSRLLGRVSMDMLCVDLTDVPKAGLGSRVELWGKQVLASEVAQGAETIPYE 342

Query: 357 LLVRIGTRYAKFYT 370
           +   +  R  + Y+
Sbjct: 343 IFCNL-RRVPRIYS 355


>gi|191168521|ref|ZP_03030307.1| alanine racemase [Escherichia coli B7A]
 gi|309794276|ref|ZP_07688700.1| alanine racemase [Escherichia coli MS 145-7]
 gi|190901419|gb|EDV61182.1| alanine racemase [Escherichia coli B7A]
 gi|308122181|gb|EFO59443.1| alanine racemase [Escherichia coli MS 145-7]
          Length = 356

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISSAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGAVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|238782924|ref|ZP_04626952.1| Alanine racemase 1 [Yersinia bercovieri ATCC 43970]
 gi|238716127|gb|EEQ08111.1| Alanine racemase 1 [Yersinia bercovieri ATCC 43970]
          Length = 359

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 182/366 (49%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHP--YALQ 127
           LR       I +L G    ++  I   N I   I S+ QL     L +  +  P    ++
Sbjct: 66  LRSGGIVKPILLLEGFFAAEDLPILVANRIETAIHSIEQL---EALEAADLPAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A       S  + + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGVRPEHAPALYQRLSTCRNVIQPVNIMSHFSRADEPQVETTRQQLSCFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARII 243
           +   G + S+A+S GILL P  H    RPGI LYG +  D+   SH  +   +  ++ +I
Sbjct: 183 ADKPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPLDEPYASHFNLLPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G   ++ 
Sbjct: 242 AVREHKAGEPVGYGGTWISERDTRLGVVAIGYGDGYPRS--------APS---GTPMWVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+      +VGD + ++G ++ ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GREVCIVGRVSMDMISVDLGPDAHDKVGDEVLLWGAELPVERIAACTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|283851833|ref|ZP_06369110.1| alanine racemase [Desulfovibrio sp. FW1012B]
 gi|283572749|gb|EFC20732.1| alanine racemase [Desulfovibrio sp. FW1012B]
          Length = 373

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 180/377 (47%), Gaps = 31/377 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++ +LR ++ L  +  N+  +  L G  R  AV+K +AYG G  + A  L  AG   F V
Sbjct: 4   AHNYLRTRVRLDHIAANYKRLAGLGG--RVLAVIKADAYGHGLLETARVLTGAGCDGFAV 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGV 120
            SV EG  LR   P+A I  L G + P  + +I   ++IP I    QL     +     V
Sbjct: 62  GSVAEGAALRAAIPRAAIVSLLGPVLPEDDAMILGHSIIPFIHDFGQLERLAGRAARKRV 121

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179
               AL+ DTG  RLG    +  +      +    +++++ SHLA ADDP++    + Q 
Sbjct: 122 KARVALKFDTGMARLGFVEADVPELLKRLEDMPAIEVAMVGSHLATADDPAAFAFVAEQG 181

Query: 180 ERFRTLISHYK----GIEASLASSSGILL-GPNYHFQLTRPGISLYG-----GTDKINKS 229
           E F  + +  +      E SL +S+GI+     + F+  R GI+LYG     GTD+    
Sbjct: 182 EGFGRICAALRRAGLAFEGSLCNSAGIMAHADRFGFETRRAGIALYGVNPFLGTDRETLG 241

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +   +    RI+ +    AG  VSYG      RD  +AV A GYAD Y   LS     
Sbjct: 242 QGLVAAMETVTRIVSVHDVAAGRSVSYGRTFTAERDMRVAVVAAGYADAYSRGLS----- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF---GPD-IKLDD 345
           ++ ++ L GK       VPI+G++ M +T  D+T  ++   GD I +    GP+ +  +D
Sbjct: 297 NAGAMCLAGK------RVPIVGRVCMQLTAVDVT-GIACAPGDVIHLLGGQGPEAVTAND 349

Query: 346 VALASGTTNYDLLVRIG 362
           VA   GT  Y++L   G
Sbjct: 350 VAGWWGTIPYEVLCLFG 366


>gi|323977248|gb|EGB72335.1| alanine racemase [Escherichia coli TW10509]
          Length = 356

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D   L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQYRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPEGIAGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|94985480|ref|YP_604844.1| alanine racemase [Deinococcus geothermalis DSM 11300]
 gi|166967411|sp|Q1IYK9|ALR_DEIGD RecName: Full=Alanine racemase
 gi|94555761|gb|ABF45675.1| alanine racemase [Deinococcus geothermalis DSM 11300]
          Length = 355

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 175/366 (47%), Gaps = 35/366 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAV--VKDNAYGLGCEKIAP-ALYNAGVQDFFVTSVEE 67
           I  +AL++N   + AL+  A T  +  VK +AYG G E +A  A  +  V  F V    E
Sbjct: 12  ISESALRSN---LTALARQAGTQLLLPVKADAYGHGMEIVARLAARHPAVWGFAVAVPRE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPY 124
              L        I +L    P  E++    +L   +PV S    L     L +   +H  
Sbjct: 69  AATLAALGLGKPILLL--TPPTLEEMGPLADLGVRLPVAS----LAEAEALPAHARAH-- 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG NRLG   +EA+        +  G L    +H A AD+P       Q  RF+ 
Sbjct: 121 -LKVDTGMNRLGARPEEAVRVGQRLAER--GLLEGAYTHFATADEPDLSFARQQFARFQE 177

Query: 185 LISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYG-GTDKINKSHPMQTVVTAEARI 242
           +++    + A  A+  G+L  GP     L RPG++ YG     +    P+  V+T +AR+
Sbjct: 178 VLAALPPVLAHAANGGGVLSFGPLPSLSLARPGLASYGFAPAHLRGVAPLTPVMTLQARV 237

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             +     GE VSYGG  + TR +++A   IGYADGYP   +G                +
Sbjct: 238 THVHAVYPGESVSYGGLWRATRKTIVATVGIGYADGYPRNATGKACV-----------LV 286

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRI 361
           +G   P+LG+I MD  M D+TD L + VGD+++++G D I + DVA   GT  Y++L  +
Sbjct: 287 RGECRPVLGRICMDQCMVDVTD-LEVRVGDWVEVWGTDKITVTDVAAWGGTVEYEVLTGL 345

Query: 362 GTRYAK 367
           G R  +
Sbjct: 346 GARVER 351


>gi|323144440|ref|ZP_08079044.1| alanine racemase [Succinatimonas hippei YIT 12066]
 gi|322415779|gb|EFY06509.1| alanine racemase [Succinatimonas hippei YIT 12066]
          Length = 359

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 178/366 (48%), Gaps = 30/366 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+  ALKNN   +      ++  AVVK NAYG G  ++A ALY   V  F V  ++E +
Sbjct: 7   EINTQALKNNIDIIKTYVPGSKIVAVVKANAYGHGLYQVASALYEK-VDAFAVARLDEAL 65

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    +  I +L G    ++   I  + +   +  + QL    +       H + L++
Sbjct: 66  NLREQGIKKPIILLEGFFNEEDLPFIARSEIYTAVHDMEQLEAIERAKVEKPLHCW-LKI 124

Query: 129 DTGFNRLG------LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           D G +RLG      L+++E L+   N   K +G    +ISHL+ AD P+ +  N  Q+  
Sbjct: 125 DIGMHRLGADPQDVLNMKERLEKCPNVL-KPIG----LISHLSVADTPTETDYNIAQINY 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           FR    H+ G +  L++S+GIL  P+ H    RPGI +YG +   DK+     ++ V+T 
Sbjct: 180 FRETAKHFSG-DLCLSNSAGILAWPDSHTPWVRPGIIMYGISPFEDKVGSDFGLKPVMTL 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ II IRK   G  V YG       D+ I + A GY DGYP          +P+   G 
Sbjct: 239 KSSIIAIRKVKKGAKVGYGAAWTAPYDTTIGIVATGYGDGYPRV--------APN---GT 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I G  VP  G + MDM   D+  +   +VGD   ++G  + ++ +A   GT  Y+L+
Sbjct: 288 PVLINGKYVPTAGHVCMDMMFVDLGLNSQDKVGDEAILWGKGLPVEKIAKLCGTIPYELV 347

Query: 359 VRIGTR 364
            R+  R
Sbjct: 348 CRVMPR 353


>gi|157157280|ref|YP_001462440.1| alanine racemase [Escherichia coli E24377A]
 gi|193066540|ref|ZP_03047582.1| alanine racemase [Escherichia coli E22]
 gi|193071186|ref|ZP_03052109.1| alanine racemase [Escherichia coli E110019]
 gi|194425883|ref|ZP_03058439.1| alanine racemase [Escherichia coli B171]
 gi|194434909|ref|ZP_03067154.1| alanine racemase [Shigella dysenteriae 1012]
 gi|209918429|ref|YP_002292513.1| alanine racemase [Escherichia coli SE11]
 gi|218694704|ref|YP_002402371.1| alanine racemase [Escherichia coli 55989]
 gi|218700229|ref|YP_002407858.1| alanine racemase [Escherichia coli IAI39]
 gi|218704705|ref|YP_002412224.1| alanine racemase [Escherichia coli UMN026]
 gi|256018560|ref|ZP_05432425.1| alanine racemase [Shigella sp. D9]
 gi|260843482|ref|YP_003221260.1| alanine racemase 2, PLP-binding [Escherichia coli O103:H2 str.
           12009]
 gi|260854851|ref|YP_003228742.1| alanine racemase 2, PLP-binding [Escherichia coli O26:H11 str.
           11368]
 gi|293404725|ref|ZP_06648717.1| alr [Escherichia coli FVEC1412]
 gi|298380368|ref|ZP_06989967.1| alr [Escherichia coli FVEC1302]
 gi|300816877|ref|ZP_07097097.1| alanine racemase [Escherichia coli MS 107-1]
 gi|300821043|ref|ZP_07101192.1| alanine racemase [Escherichia coli MS 119-7]
 gi|300896564|ref|ZP_07115085.1| alanine racemase [Escherichia coli MS 198-1]
 gi|300906907|ref|ZP_07124581.1| alanine racemase [Escherichia coli MS 84-1]
 gi|300920384|ref|ZP_07136819.1| alanine racemase [Escherichia coli MS 115-1]
 gi|300921848|ref|ZP_07138005.1| alanine racemase [Escherichia coli MS 182-1]
 gi|301305555|ref|ZP_07211646.1| alanine racemase [Escherichia coli MS 124-1]
 gi|301327101|ref|ZP_07220381.1| alanine racemase [Escherichia coli MS 78-1]
 gi|307310056|ref|ZP_07589706.1| alanine racemase [Escherichia coli W]
 gi|331662583|ref|ZP_08363506.1| alanine racemase [Escherichia coli TA143]
 gi|331667571|ref|ZP_08368435.1| alanine racemase [Escherichia coli TA271]
 gi|331676966|ref|ZP_08377662.1| alanine racemase [Escherichia coli H591]
 gi|331682674|ref|ZP_08383293.1| alanine racemase [Escherichia coli H299]
 gi|332279622|ref|ZP_08392035.1| alanine racemase [Shigella sp. D9]
 gi|157079310|gb|ABV19018.1| alanine racemase [Escherichia coli E24377A]
 gi|192925819|gb|EDV80471.1| alanine racemase [Escherichia coli E22]
 gi|192955518|gb|EDV85998.1| alanine racemase [Escherichia coli E110019]
 gi|194415938|gb|EDX32204.1| alanine racemase [Escherichia coli B171]
 gi|194416842|gb|EDX32966.1| alanine racemase [Shigella dysenteriae 1012]
 gi|209911688|dbj|BAG76762.1| alanine racemase [Escherichia coli SE11]
 gi|218351436|emb|CAU97144.1| alanine racemase 2, PLP-binding [Escherichia coli 55989]
 gi|218370215|emb|CAR18011.1| alanine racemase 2, PLP-binding [Escherichia coli IAI39]
 gi|218431802|emb|CAR12687.1| alanine racemase 2, PLP-binding [Escherichia coli UMN026]
 gi|257753500|dbj|BAI25002.1| alanine racemase 2, PLP-binding [Escherichia coli O26:H11 str.
           11368]
 gi|257758629|dbj|BAI30126.1| alanine racemase 2, PLP-binding [Escherichia coli O103:H2 str.
           12009]
 gi|291426933|gb|EFE99959.1| alr [Escherichia coli FVEC1412]
 gi|298277810|gb|EFI19324.1| alr [Escherichia coli FVEC1302]
 gi|300359593|gb|EFJ75463.1| alanine racemase [Escherichia coli MS 198-1]
 gi|300401340|gb|EFJ84878.1| alanine racemase [Escherichia coli MS 84-1]
 gi|300412600|gb|EFJ95910.1| alanine racemase [Escherichia coli MS 115-1]
 gi|300421774|gb|EFK05085.1| alanine racemase [Escherichia coli MS 182-1]
 gi|300526342|gb|EFK47411.1| alanine racemase [Escherichia coli MS 119-7]
 gi|300530651|gb|EFK51713.1| alanine racemase [Escherichia coli MS 107-1]
 gi|300839144|gb|EFK66904.1| alanine racemase [Escherichia coli MS 124-1]
 gi|300846279|gb|EFK74039.1| alanine racemase [Escherichia coli MS 78-1]
 gi|306909774|gb|EFN40268.1| alanine racemase [Escherichia coli W]
 gi|315060440|gb|ADT74767.1| Alanine racemase [Escherichia coli W]
 gi|315254855|gb|EFU34823.1| alanine racemase [Escherichia coli MS 85-1]
 gi|320181803|gb|EFW56713.1| Alanine racemase, catabolic [Shigella boydii ATCC 9905]
 gi|320199227|gb|EFW73818.1| Alanine racemase, catabolic [Escherichia coli EC4100B]
 gi|323153142|gb|EFZ39406.1| alanine racemase [Escherichia coli EPECa14]
 gi|323162287|gb|EFZ48145.1| alanine racemase [Escherichia coli E128010]
 gi|323172462|gb|EFZ58099.1| alanine racemase [Escherichia coli LT-68]
 gi|323185649|gb|EFZ71010.1| alanine racemase [Escherichia coli 1357]
 gi|323378997|gb|ADX51265.1| alanine racemase [Escherichia coli KO11]
 gi|323947528|gb|EGB43532.1| alanine racemase [Escherichia coli H120]
 gi|324017565|gb|EGB86784.1| alanine racemase [Escherichia coli MS 117-3]
 gi|324117262|gb|EGC11169.1| alanine racemase [Escherichia coli E1167]
 gi|331061005|gb|EGI32969.1| alanine racemase [Escherichia coli TA143]
 gi|331065156|gb|EGI37051.1| alanine racemase [Escherichia coli TA271]
 gi|331075655|gb|EGI46953.1| alanine racemase [Escherichia coli H591]
 gi|331080305|gb|EGI51484.1| alanine racemase [Escherichia coli H299]
 gi|332092228|gb|EGI97305.1| alanine racemase [Shigella boydii 5216-82]
 gi|332097916|gb|EGJ02889.1| alanine racemase [Shigella dysenteriae 155-74]
 gi|332101974|gb|EGJ05320.1| alanine racemase [Shigella sp. D9]
          Length = 356

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISSAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|257481781|ref|ZP_05635822.1| alanine racemase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331009415|gb|EGH89471.1| alanine racemase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 357

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 38/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR     A + +L G     E  +I + N   V+ S  QL     +    ++ P   
Sbjct: 63  ALELRAAGIHAPVLLLEGFFEADELALIVEHNFWAVVHSTWQL---EAIEQAQLARPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++DTG +R+GL   E      +++ + L  G+++ I+  SH A AD+ +S  +    E
Sbjct: 120 WLKIDTGMHRVGLYPHE----YQSAYQRLLVTGKVARIVLMSHFARADELNSGCSD---E 172

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QT 234
           +F    S  KG+  E SL +S  +L  P+     +RPGI LYG T    ++HP+    Q 
Sbjct: 173 QFAVFESFRKGLVAETSLKNSPAVLGWPHIPSDWSRPGIMLYGAT-PFGQAHPLADRLQP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T E++II +R+  AGE V YG      R   I V A+GYADGYP         H+P+ 
Sbjct: 232 VMTLESKIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYP--------RHAPT- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  
Sbjct: 283 --GTPVQIDGQASRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATLAETIP 340

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++   +  R  + Y+
Sbjct: 341 YEIFCNL-RRVPRIYS 355


>gi|323964681|gb|EGB60152.1| alanine racemase [Escherichia coli M863]
 gi|327253872|gb|EGE65501.1| alanine racemase [Escherichia coli STEC_7v]
          Length = 356

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D   L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQYRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGIAGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYAARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|283832821|ref|ZP_06352562.1| alanine racemase [Citrobacter youngae ATCC 29220]
 gi|291071417|gb|EFE09526.1| alanine racemase [Citrobacter youngae ATCC 29220]
          Length = 356

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 183/367 (49%), Gaps = 38/367 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEGV 69
           IDL ALK N       + +AR  +VVK NAYG G E++  AL   G  D F + ++EE +
Sbjct: 9   IDLQALKQNLAITRQAAPDARVWSVVKANAYGHGIERVWNAL---GTTDGFAMLNLEEAI 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR    +  I +L G     +  ++D   L   + S  QL     L +  ++ P    L
Sbjct: 66  TLRERGWKGPILMLEGFFHADDLKVYDKYRLTTCVHSNWQL---KALQNARLNAPLDVYL 122

Query: 127 QVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +V++G NRLG L  + +  +        +G+++L+ SH A A+ P    N +Q E    +
Sbjct: 123 KVNSGMNRLGFLPDRVSTVWQQLRAMPNVGEMTLM-SHFADAEHP----NGIQ-EAMTRI 176

Query: 186 ISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTVVT 237
               +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++ V+T
Sbjct: 177 AQATEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II I+   AG+ V YGG+   + +  I + A GYADGYP         H+PS   G
Sbjct: 235 LSSEIIGIQTLKAGDRVGYGGRYTASGEQRIGIVATGYADGYP--------RHAPS---G 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L
Sbjct: 284 TPVLVDGVRTTTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVASAAGTVGYEL 343

Query: 358 LVRIGTR 364
           +  +  R
Sbjct: 344 MCSLALR 350


>gi|170681793|ref|YP_001744011.1| alanine racemase [Escherichia coli SMS-3-5]
 gi|300939584|ref|ZP_07154241.1| alanine racemase [Escherichia coli MS 21-1]
 gi|170519511|gb|ACB17689.1| alanine racemase [Escherichia coli SMS-3-5]
 gi|300455588|gb|EFK19081.1| alanine racemase [Escherichia coli MS 21-1]
          Length = 356

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISSAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|330986844|gb|EGH84947.1| alanine racemase [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 357

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 38/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR     A + +L G     E  +I + N   V+ S  QL     +    ++ P   
Sbjct: 63  ALELRAAGIHAPVLLLEGFFEADELALIVEHNFWTVVHSTWQL---EAIEQAQLARPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++DTG +R+GL   E      +++ + L  G+++ I+  SH A AD+ +S  +    E
Sbjct: 120 WLKIDTGMHRVGLYPHE----YQSAYQRLLVTGKVARIVLMSHFARADELNSGCSD---E 172

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QT 234
           +F    S  KG+  E SL +S  +L  P+     +RPGI LYG T    ++HP+    Q 
Sbjct: 173 QFAVFESFRKGLVAETSLKNSPAVLGWPHIPSDWSRPGIMLYGAT-PFGQAHPLADRLQP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T E++II +R+  AGE V YG      R   I V A+GYADGYP         H+P+ 
Sbjct: 232 VMTLESKIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYP--------RHAPT- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  
Sbjct: 283 --GTPVQIDGQASRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATLAETIP 340

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++   +  R  + Y+
Sbjct: 341 YEIFCNL-RRVPRIYS 355


>gi|170717657|ref|YP_001784734.1| alanine racemase [Haemophilus somnus 2336]
 gi|168825786|gb|ACA31157.1| alanine racemase [Haemophilus somnus 2336]
          Length = 359

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 179/362 (49%), Gaps = 25/362 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   ALK+N   +   + N++  A+VK NAYG G E ++  L++  V  F V  + E +
Sbjct: 9   RISSVALKHNIQVIKQKAKNSKVIAIVKANAYGHGLEFVSSTLHHL-VDCFGVARLSEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           +L        I +L G     +  II   N+  VI +  QL    K         + L++
Sbjct: 68  RLCTEGITKPILLLEGFFSEDDLPIIAVNNIQTVIHNQEQLYVLKKAKLPNKIKVW-LKI 126

Query: 129 DTGFNRLGLSLQEALDF----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           DTG +RLG+ L++  DF       S  K++G     +SH + AD+       +QLERF  
Sbjct: 127 DTGMHRLGVDLEQVEDFYQQLVQCSNVKEIG----FLSHFSRADELMCGYTEIQLERFLQ 182

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARI 242
           +    +G E S+ +SSGIL     +    RPGI +YG    +   + + +  V+T  + +
Sbjct: 183 VTEGKQG-ERSIVASSGILFWQQAYLDWIRPGIIMYGISPNNTPAEVYGLIPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I IR    GE V YGG     RD+ I V AIGY DGYP  +             G   +I
Sbjct: 242 ITIRNHKKGEPVGYGGSWISERDTKIGVVAIGYGDGYPRDMPQ-----------GTPVYI 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G+++MDM   D+      +VGD + ++G ++ +++++  SG  +Y+L+ ++ 
Sbjct: 291 NGRKVPIVGRVSMDMLTVDLGIESQDKVGDEVILWGKELPIEEISAISGMISYELITKLT 350

Query: 363 TR 364
            R
Sbjct: 351 PR 352


>gi|50122586|ref|YP_051753.1| alanine racemase [Pectobacterium atrosepticum SCRI1043]
 gi|123614469|sp|Q3V7N2|ALR_ERWCT RecName: Full=Alanine racemase
 gi|49613112|emb|CAG76563.1| alanine racemase, biosynthetic [Pectobacterium atrosepticum
           SCRI1043]
          Length = 360

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 178/366 (48%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A    +A    + V  + E + 
Sbjct: 8   INRRALRHNLQRIRQLAPGSQIVAVVKANAYGHGMIESAHTFCDADC--YGVARLSEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  ++ +  L   + S+ QL   + L    +  P    ++
Sbjct: 66  LRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHSLEQL---AALEQATLPQPIRVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A  F    +  + + Q   I+SH   AD+P +     QL  F    
Sbjct: 123 LDTGMHRLGVLPEHADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQLACFDAFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI LYG +  D  + +H   Q  +T  + +I
Sbjct: 183 QGKPGAQ-SIAASGGILLWPQAHRDRVRPGIILYGVSPLDNEDAAHFGFQPAMTFTSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V A+GY DGYP          +P+   G    I 
Sbjct: 242 AVREHKAGETVGYGGTWTSPRDTRLGVVAVGYGDGYPRC--------APA---GTPVLIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP+ G+++MDM   D+      +VGD + ++GP + ++ +A  +G + Y+L+ R+  
Sbjct: 291 GREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGPTLSVERIAAHTGASAYELITRLTQ 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RTALEY 356


>gi|284920994|emb|CBG34059.1| alanine racemase, catabolic [Escherichia coli 042]
          Length = 356

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLDIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISGAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLTAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|330977319|gb|EGH77272.1| alanine racemase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 357

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 187/374 (50%), Gaps = 34/374 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL  +    F V  +EE
Sbjct: 5   RAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-ESQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A + +L G     E  +I + +L  V+ +  QL    +    G      L
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELALIVEHDLWTVVHATWQLEAIEQ-ARLGKPITVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLERF 182
           ++DTG +R+GL   E        + + L  G+++ I+  SH + AD+ +S  +  QL  F
Sbjct: 122 KLDTGMHRVGLHPHE----YQAGYQRLLATGKVARIVLMSHSSRADELNSGCSDEQLAVF 177

Query: 183 RTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVV 236
            T     KG+  E SL +S  +L  P      +RPGI LYG T   ++ HP+    Q V+
Sbjct: 178 ETF---RKGLAAETSLKTSPAVLGWPQIPSDWSRPGIMLYGAT-PFDQVHPLADRLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E++II +R+  AGE V YG      R S I V A+GYADGYP         H+P+   
Sbjct: 234 TLESKIISVRELPAGEPVGYGATFVCDRPSRIGVVAMGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  + T  Y+
Sbjct: 283 GTPVQIDGQPSRLLGRVSMDMLCVDLTDVPQAGLGSRVELWGKQVLASEVAQRAETIPYE 342

Query: 357 LLVRIGTRYAKFYT 370
           +   +  R  + Y+
Sbjct: 343 IFCNL-RRVPRIYS 355


>gi|330964276|gb|EGH64536.1| alanine racemase [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 357

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 188/374 (50%), Gaps = 34/374 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARDSSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A I +L G     E  +I + +L  V+ +V QL    +    G      L
Sbjct: 63  ALELRTAGIRAPILLLEGFFEADELALIVEHDLWTVVHAVWQLEAIEQAQP-GKPLTVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLERF 182
           ++DTG +R+GL   E       ++ + L  G+++ ++  SH +CAD+ +S  +  Q+  F
Sbjct: 122 KLDTGMHRVGLHPCE----YRAAYQRLLATGKVARVVLMSHFSCADELNSACSDQQVAVF 177

Query: 183 RTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVV 236
               +  +G+  E SL +S  ++  P  H   +R GI LYG T   +++ P+    Q V+
Sbjct: 178 E---AARQGLVAEISLKNSPAVMGWPKIHSDWSRTGIMLYGAT-PFDQAQPLAKRLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+++I +R+  AGE V YG      R   I   A+GYADGYP         H+P+   
Sbjct: 234 TLESKVISVRELPAGEAVGYGATFVSERPLRIGAVAMGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  +GT  Y 
Sbjct: 283 GTPVLIDGQRSRLLGRVSMDMLCIDLTDLPQAGLGSRVELWGKGVLASEVATQAGTIPYQ 342

Query: 357 LLVRIGTRYAKFYT 370
           +   +  R  + Y+
Sbjct: 343 IFCNL-RRVPRIYS 355


>gi|110805189|ref|YP_688709.1| alanine racemase [Shigella flexneri 5 str. 8401]
 gi|110614737|gb|ABF03404.1| alanine racemase 2, catabolic [Shigella flexneri 5 str. 8401]
 gi|332757831|gb|EGJ88158.1| alanine racemase [Shigella flexneri 4343-70]
 gi|333005412|gb|EGK24930.1| alanine racemase [Shigella flexneri K-218]
          Length = 356

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQSDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|320659446|gb|EFX27015.1| alanine racemase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 356

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 182/371 (49%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  ++D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L      +    +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLWAMANVGEMTLM-SHFAEAEHPDG--ISGAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|157160693|ref|YP_001458011.1| alanine racemase [Escherichia coli HS]
 gi|170020442|ref|YP_001725396.1| alanine racemase [Escherichia coli ATCC 8739]
 gi|188493753|ref|ZP_03001023.1| alanine racemase 2, catabolic [Escherichia coli 53638]
 gi|194437125|ref|ZP_03069224.1| alanine racemase [Escherichia coli 101-1]
 gi|253773812|ref|YP_003036643.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161272|ref|YP_003044380.1| alanine racemase [Escherichia coli B str. REL606]
 gi|300928267|ref|ZP_07143804.1| alanine racemase [Escherichia coli MS 187-1]
 gi|301648159|ref|ZP_07247912.1| alanine racemase [Escherichia coli MS 146-1]
 gi|307137803|ref|ZP_07497159.1| alanine racemase [Escherichia coli H736]
 gi|312971372|ref|ZP_07785547.1| alanine racemase [Escherichia coli 1827-70]
 gi|331641716|ref|ZP_08342851.1| alanine racemase [Escherichia coli H736]
 gi|157066373|gb|ABV05628.1| alanine racemase [Escherichia coli HS]
 gi|169755370|gb|ACA78069.1| alanine racemase [Escherichia coli ATCC 8739]
 gi|188488952|gb|EDU64055.1| alanine racemase 2, catabolic [Escherichia coli 53638]
 gi|194424108|gb|EDX40096.1| alanine racemase [Escherichia coli 101-1]
 gi|242376970|emb|CAQ31692.1| alanine racemase 2, PLP-binding [Escherichia coli BL21(DE3)]
 gi|253324856|gb|ACT29458.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973173|gb|ACT38844.1| alanine racemase [Escherichia coli B str. REL606]
 gi|253977387|gb|ACT43057.1| alanine racemase [Escherichia coli BL21(DE3)]
 gi|300463736|gb|EFK27229.1| alanine racemase [Escherichia coli MS 187-1]
 gi|301073745|gb|EFK88551.1| alanine racemase [Escherichia coli MS 146-1]
 gi|310335969|gb|EFQ01169.1| alanine racemase [Escherichia coli 1827-70]
 gi|315615973|gb|EFU96599.1| alanine racemase [Escherichia coli 3431]
 gi|323962767|gb|EGB58345.1| alanine racemase [Escherichia coli H489]
 gi|323973413|gb|EGB68600.1| alanine racemase [Escherichia coli TA007]
 gi|331038514|gb|EGI10734.1| alanine racemase [Escherichia coli H736]
          Length = 356

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|300115384|ref|YP_003761959.1| alanine racemase [Nitrosococcus watsonii C-113]
 gi|299541321|gb|ADJ29638.1| alanine racemase [Nitrosococcus watsonii C-113]
          Length = 356

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 181/367 (49%), Gaps = 21/367 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F +  ID +AL++N   +  L+  +R  AVVK + YG G   +A AL  A    F V  +
Sbjct: 3   FPQAIIDASALRHNLQRVRELAPRSRIMAVVKADGYGHGLTSVAGALVAA--DAFAVARL 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  + +L GI   ++ ++     L  V+    QL    ++       P 
Sbjct: 61  EEAMALRQAGHRCPVVLLGGIADKEQLQLAAAHRLTLVVHEFAQLELLERVPIIS-PLPV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+ DTG +RLG S + A +          +  +  +++HLA AD+    +  +QL+ F 
Sbjct: 120 WLKADTGMHRLGFSPEVAAEAVARLRGCPAVASVVGVMTHLASADESEDSLTPIQLQVFE 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEA 240
            + +   G+  S+A+S+ +++ P+ HF   RPG+ LYG +   + +     +++V+T + 
Sbjct: 180 EIAA--PGLLRSMANSAAVIIYPHVHFDWVRPGLMLYGASPFAHGTGAAVGLKSVMTLKT 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I       G+ + YG         ++ VAA+GY DGYP         H+ S   G   
Sbjct: 238 RLIATHHLRPGDSIGYGATWVCPEAMMVGVAALGYGDGYP--------RHARS---GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  V ++G+++MDM   D+      +VGD +  +GPD+ +++VA  + T  Y+LL +
Sbjct: 287 LVNGRPVSLVGRVSMDMITLDLRTQPEAKVGDPVIAWGPDLPVEEVARHATTIPYELLCQ 346

Query: 361 IGTRYAK 367
           +  R  +
Sbjct: 347 VTARVPR 353


>gi|110641415|ref|YP_669145.1| alanine racemase [Escherichia coli 536]
 gi|191171055|ref|ZP_03032606.1| alanine racemase [Escherichia coli F11]
 gi|300996024|ref|ZP_07181358.1| alanine racemase [Escherichia coli MS 200-1]
 gi|110343007|gb|ABG69244.1| alanine racemase, catabolic [Escherichia coli 536]
 gi|190908787|gb|EDV68375.1| alanine racemase [Escherichia coli F11]
 gi|300304631|gb|EFJ59151.1| alanine racemase [Escherichia coli MS 200-1]
 gi|324015669|gb|EGB84888.1| alanine racemase [Escherichia coli MS 60-1]
          Length = 356

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G +   +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVLTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|127514205|ref|YP_001095402.1| alanine racemase [Shewanella loihica PV-4]
 gi|254802378|sp|A3QI45|ALR_SHELP RecName: Full=Alanine racemase
 gi|126639500|gb|ABO25143.1| alanine racemase [Shewanella loihica PV-4]
          Length = 358

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 187/369 (50%), Gaps = 26/369 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I   ALK N   +  L+  ++  AVVK N YG G   +A  L +A    F +  +
Sbjct: 4   FPRAEISGDALKANLKRLRQLAPQSKVMAVVKANGYGHGLLNVAHCLASA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE ++LR     A++ +L G   P     + + ++  V+    QL     L +  ++ P 
Sbjct: 62  EEALELRAGGVSAKLLLLEGFFRPSDVATLVEHDIDTVVHHESQLEM---LEAASLAKPV 118

Query: 125 A--LQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              +++DTG +RLG +L   EA+ +        + +   +++H ACAD+P +   + Q  
Sbjct: 119 TVWMKIDTGMHRLGFNLDQFEAI-YQRLQACANVAKPINLMTHFACADEPDNPATAEQAR 177

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
           RF  + ++  G + +LA+S+  L          RPGI+LYG +     + ++H ++  + 
Sbjct: 178 RFEQMTANLPG-DRTLANSAATLYWQATQADWIRPGIALYGVSPVVGDLGRNHGLEPAME 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +++I +R   AG+ V YG   +  +D+ + V AIGY DGYP         ++P    G
Sbjct: 237 LVSQLIAVRDHKAGDPVGYGSYWRAKQDTKLGVVAIGYGDGYP--------RNAPE---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              ++ G +VP++G+++MDM   D+    + +VGD   ++G  + +++VA   GT  Y+L
Sbjct: 286 TPVWVNGRLVPVVGRVSMDMLTVDLGLDATDKVGDTAVLWGKALPVEEVAEHIGTIAYEL 345

Query: 358 LVRIGTRYA 366
           + ++  R A
Sbjct: 346 VTKLTPRVA 354


>gi|170719388|ref|YP_001747076.1| alanine racemase [Pseudomonas putida W619]
 gi|169757391|gb|ACA70707.1| alanine racemase [Pseudomonas putida W619]
          Length = 357

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 187/366 (51%), Gaps = 35/366 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A + +L G     E  +I + +L  V+ S+ QL    K     V  P  L
Sbjct: 63  ALELRAAGIKAPMLLLEGFFEASELSLIAEHDLWCVVHSLWQLEAIEK---TPVHKPLTL 119

Query: 127 --QVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
             ++D+G +R+GL  ++     H ++ + L  G+++ I+  SH A AD+  +     Q+ 
Sbjct: 120 WLKLDSGMHRVGLHPKD----YHEAYQRLLASGKVARIVLMSHFARADELDADATEQQIA 175

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
            F    +  +G+  E SL +S G+L  P+      RPGI LYG T       ++  +Q V
Sbjct: 176 VFE---AARQGLAAECSLRNSPGVLAWPHAPSDWVRPGIMLYGATPFEVAQAQAERLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++R+I +R+  AGE V YG +    R + + V A+GYADGYP          +P+  
Sbjct: 233 MTLQSRVISVRELPAGEPVGYGAKFISPRPTRVGVVAMGYADGYP--------RQAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+++MDM   D+TD     +G  ++++G  +   +VA+ +GT  Y
Sbjct: 283 -GTPVMVAGKRSQLIGRVSMDMLCIDLTDVPEATIGSPVELWGKHVLASEVAMHAGTIPY 341

Query: 356 DLLVRI 361
            +   +
Sbjct: 342 QIFCNL 347


>gi|333005015|gb|EGK24535.1| alanine racemase [Shigella flexneri VA-6]
          Length = 356

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|292493497|ref|YP_003528936.1| alanine racemase [Nitrosococcus halophilus Nc4]
 gi|291582092|gb|ADE16549.1| alanine racemase [Nitrosococcus halophilus Nc4]
          Length = 356

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 179/370 (48%), Gaps = 25/370 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F +  IDL+AL++N   +  L   +R  AVVK + YG G ++IA  L  A    F V  +
Sbjct: 3   FPQAIIDLSALRHNLQRVRELVPRSRVMAVVKADGYGHGLKRIAQVLAEA--HAFAVARL 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            E + LR    +  I +L GI   +E ++    +L  V+    QL     L    V+ P 
Sbjct: 61  GEALVLRQAGYRGDIVLLEGIADKEELQLAAAYHLTLVVHEATQLDL---LWQAPVNAPL 117

Query: 125 A--LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           +  L+VDTG +RLG   +   +  T       +  +  ++SHLA AD     + ++QLE 
Sbjct: 118 SVWLKVDTGMHRLGFPPERVAEAVTSLRRCPAVAAVVGLMSHLANADQAEDSLTAIQLET 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTA 238
           F  +     G+  S+A+S+ ++  P  HF   RPG+ LYG +   + +     ++ V+T 
Sbjct: 178 FERIT--VPGLWRSMANSAAVIACPQAHFDWVRPGLMLYGVSPFAHCTGAAVGLKPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           + R+I I     G+ + YG          + VAAIGY DGYP         H+     G 
Sbjct: 236 KTRLIAIHHLHPGDSIGYGATWVCPEAMAVGVAAIGYGDGYP--------RHAAP---GT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G  VP++G+++MDM   D+      +VGD + ++G  + ++++A  + T  Y+LL
Sbjct: 285 PLLVNGRPVPLVGRVSMDMVTLDLRSQPEAKVGDPVIVWGAGLPVEEIACHAATIPYELL 344

Query: 359 VRIGTRYAKF 368
            ++  R  + 
Sbjct: 345 CQVTARVPRI 354


>gi|113461082|ref|YP_719150.1| alanine racemase [Haemophilus somnus 129PT]
 gi|112823125|gb|ABI25214.1| alanine racemase [Haemophilus somnus 129PT]
          Length = 359

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 179/362 (49%), Gaps = 25/362 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   ALK+N   +   + N++  A+VK NAYG G E ++  L++  V  F V  + E +
Sbjct: 9   RISSVALKHNIQVIKQKAKNSKVIAIVKANAYGHGLEFVSSTLHHL-VDCFGVARLSEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           +L        I +L G     +  II   N+  VI +  QL +  K           L++
Sbjct: 68  RLCAEGITKPILLLEGFFSEDDLPIIAVNNIQTVIHNQEQL-YELKKAKLPNKIKVWLKI 126

Query: 129 DTGFNRLGLSLQEALDF----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           DTG +RLG+ L++  DF       S  K++G     +SH + AD+       +QLERF  
Sbjct: 127 DTGMHRLGVDLEQVEDFYQQLVQCSNVKEIG----FLSHFSRADELMCGYTEIQLERFLQ 182

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARI 242
           +    +G E S+ +SSGIL     +    RPGI +YG    +   + + +  V+T  + +
Sbjct: 183 VTEGKQG-ERSIVASSGILFWQQAYLDWIRPGIIMYGISPNNTPAEVYGLIPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I IR    GE V YGG     RD+ I V AIGY DGYP  +             G   +I
Sbjct: 242 ITIRNHKKGEPVGYGGSWISERDTKIGVVAIGYGDGYPRDMPQ-----------GTPVYI 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G+++MDM   D+      +VGD + ++G ++ +++++  SG  +Y+L+ ++ 
Sbjct: 291 NGRKVPIVGRVSMDMLTVDLGIESQDKVGDEVILWGKELPIEEISAISGMISYELITKLT 350

Query: 363 TR 364
            R
Sbjct: 351 PR 352


>gi|218689133|ref|YP_002397345.1| alanine racemase [Escherichia coli ED1a]
 gi|218426697|emb|CAR07532.1| alanine racemase 2, PLP-binding [Escherichia coli ED1a]
          Length = 356

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  A+   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAI---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISSAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIISVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|320195830|gb|EFW70455.1| Alanine racemase, catabolic [Escherichia coli WV_060327]
          Length = 356

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|218245760|ref|YP_002371131.1| alanine racemase [Cyanothece sp. PCC 8801]
 gi|218166238|gb|ACK64975.1| alanine racemase [Cyanothece sp. PCC 8801]
          Length = 403

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 180/385 (46%), Gaps = 29/385 (7%)

Query: 2   HSNEFLR----LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           H +E +R    ++I+  AL +N   +  L S      AVVK +AYG G  K+A    +AG
Sbjct: 18  HLSEIIRQRAWVEINQQALIHNVAEIKGLLSPKTALMAVVKADAYGHGAIKVAQTALDAG 77

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQ-LTFYSK 114
                + ++ EG++LR     A I +L  I+  +E   I    L P + +  Q L F   
Sbjct: 78  ANGLAIATLGEGIELREAGITAPILILGAINTSEEIAAIAQWQLQPTLCNPQQALIFSDT 137

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L   G + P  L++DTG +RLG    +A DF          +++ I SHLA ADDP    
Sbjct: 138 LSKLGQTLPVHLKLDTGMSRLGTPWHQATDFVRLVQQLPYLKIATIYSHLATADDPDRSE 197

Query: 175 NSVQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
              Q  RF+  I+  K     L     A+S+  L+ PN H+ L R G++LYG      + 
Sbjct: 198 MERQHRRFKQAIAQLKSHGLPLPPLHFANSAATLVNPNLHYDLVRVGLALYGLYPAPHLR 257

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+  +A++  ++    G  VSYG Q    R   +AV  IGYADG P  LS   
Sbjct: 258 SFADLKPVLQVKAKVTQVKTIPPGTGVSYGYQFVSDRTMDVAVVGIGYADGVPRNLSN-- 315

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      +  I+G  V  +G ITMD  M D++   +++VG+ + + G D    I  
Sbjct: 316 ---------RLEVLIRGQRVRQIGAITMDQLMLDVSAIPNLQVGEVVTLIGKDGDQEITA 366

Query: 344 DDVALASGTTNYDLLVRIGTRYAKF 368
           DD A   GT ++++L     R  + 
Sbjct: 367 DDWANKLGTISWEILCGFKHRLPRI 391


>gi|238897886|ref|YP_002923565.1| alanine racemase 1, PLP-binding, biosynthetic [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|259710068|sp|C4K4C4|ALR_HAMD5 RecName: Full=Alanine racemase
 gi|229465643|gb|ACQ67417.1| alanine racemase 1, PLP-binding, biosynthetic [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 358

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 183/366 (50%), Gaps = 22/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           I+L +L++N   +   +  +R  AVVK NAYG G   +A AL NA   D+F V  +EE +
Sbjct: 8   INLKSLRHNLEKIQQYAPKSRLMAVVKANAYGHGLLTVAQALKNA---DYFSVARIEEAL 64

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR       I +L G    ++  +   N I  VI +  QL    K+        + +++
Sbjct: 65  TLRSGGIIKPILLLEGFFSLEDLAVLQVNHIETVIHNFEQLVALEKVRLPEPVRVW-MKI 123

Query: 129 DTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG +RLG+ L++A  F     N   + +   II+HL+  +     V   Q+  F   + 
Sbjct: 124 DTGMHRLGVRLEQADAFYQRLQNCPNVAKPIHIITHLSDVNPHHPVVTDQQIRSFDAFVQ 183

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
              G + S+A+S  ILL P  H  + RPGI+LYG +     I + + +  V+T ++ +I 
Sbjct: 184 GKPG-QKSIAASGAILLCPQSHRDVVRPGIALYGISPFEHFIGRDYGLLPVMTLQSPLIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  AGE V Y G+      + + V AIGY DGYP        + +P+   G   +I  
Sbjct: 243 VREHKAGETVGYAGEWISQTATFLGVLAIGYGDGYP--------QSAPT---GTPVWIND 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             VPI+G+++MDM   D+    + +VGD   ++G  + L+ VA   G T Y+L+ ++  R
Sbjct: 292 RQVPIVGRVSMDMISVDLGRDATDKVGDRAVLWGDQLSLEKVASYIGYTAYELVSKLTGR 351

Query: 365 YAKFYT 370
            A  Y 
Sbjct: 352 VAISYV 357


>gi|288934755|ref|YP_003438814.1| alanine racemase [Klebsiella variicola At-22]
 gi|288889464|gb|ADC57782.1| alanine racemase [Klebsiella variicola At-22]
          Length = 356

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 178/369 (48%), Gaps = 42/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL+ N   +   +  +R  AVVK NAYG G  ++  AL  +G   F + ++EE + 
Sbjct: 9   IDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSAL--SGADGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQV 128
           LR    +  I +L G     E  + D   +   +SV        L    +  P    L+V
Sbjct: 67  LREQGWKGPILLLEGFFHADELAVLDQYRL--TTSVHSNWQIKALQQAKLRAPLDIYLKV 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++G NRLG   +      H  + +      +G+++L+ SH A A++P   V     E  R
Sbjct: 125 NSGMNRLGFMPER----VHTVWQQLRAISNVGEMTLM-SHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTV 235
            +    +G++   SLA+S+  L  P  HF   RPGI LYG +      D  N    ++ V
Sbjct: 175 RIEQAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTG--LKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++    GE + YGG  + +++  I + A GYADGYP          +PS  
Sbjct: 233 MTLRSEIIGVQNLRPGEAIGYGGLYRTSQEQRIGIVACGYADGYPRV--------APS-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y
Sbjct: 283 -GTPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALAPR 350


>gi|53803938|ref|YP_114173.1| alanine racemase [Methylococcus capsulatus str. Bath]
 gi|81823645|sp|Q607M5|ALR_METCA RecName: Full=Alanine racemase
 gi|53757699|gb|AAU91990.1| alanine racemase [Methylococcus capsulatus str. Bath]
          Length = 359

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 178/363 (49%), Gaps = 23/363 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +D+ A  +N+  + A + +++  AV+K NAYG G   I  A        F V  VEE
Sbjct: 6   RAVLDMAAFAHNFAWIRAAAPDSKIMAVIKANAYGHGL--IRAARALPAADAFAVARVEE 63

Query: 68  GVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           G+ LR      RI VL  YG   G  ++     L PVI S  QL    +L    V     
Sbjct: 64  GIVLRQAGIAQRIAVLQGYGDEEGM-RLSARHGLEPVIHSGFQLDLLERL-DTSVPMGVW 121

Query: 126 LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+ D+G +RLGL+ +E A      +   ++ Q   +++HLA AD        +QL  F  
Sbjct: 122 LKADSGMHRLGLADEEFARARLRLARMPQVRQPVPVMTHLANADATDDPTTEIQLRCFGR 181

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEAR 241
           +       E S+ +S+G++          RPGI LYG +    +S P   +  V+T ++R
Sbjct: 182 MAGGRG--EFSIGNSAGLMAWAAARSAWVRPGILLYGVSPFPGRSGPEEGLMPVMTLQSR 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +++   G+ V YGG     R + + +AAIGY DGYP   +            G    
Sbjct: 240 LIAVKQLKTGDAVGYGGDFICRRPTRMGIAAIGYGDGYPRRAA-----------TGTPVL 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           ++G  VP++G+++MDM   D+TD  S E+GD + ++G  + ++++AL + T  Y LL  +
Sbjct: 289 VRGRRVPLIGRVSMDMISVDLTDCPSAEIGDTVTLWGQGLPVEEIALHADTIPYVLLCNV 348

Query: 362 GTR 364
             R
Sbjct: 349 TQR 351


>gi|238794660|ref|ZP_04638266.1| Alanine racemase 1 [Yersinia intermedia ATCC 29909]
 gi|238726049|gb|EEQ17597.1| Alanine racemase 1 [Yersinia intermedia ATCC 29909]
          Length = 359

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 183/366 (50%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHP--YALQ 127
           LR       I +L G    ++  I   N I   + S+ QL     L +  +  P    ++
Sbjct: 66  LRSGGIVKPILLLEGFFAAEDLPILVANRIETAVHSIEQL---EALEAADLPAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       + + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGVRPEQADAFYQRLCACRNVIQPVNIMSHFSRADEPEVETTHQQLACFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI LYG +  D+   SH  +   +  ++ +I
Sbjct: 183 IGKPG-KQSIAASGGILLWPQAHRDWVRPGIILYGVSPMDEPYASHFDLLPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG      D+ + V AIGY DGYP +        +PS   G   ++ 
Sbjct: 242 AVREHKAGEPVGYGGTWVSEHDTRLGVVAIGYGDGYPRS--------APS---GTPMWVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+  + S +VGD + ++G D+ ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GREVCIVGRVSMDMISVDLGPNSSDKVGDEVLLWGADLPVEKIAAYTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|225620639|ref|YP_002721897.1| alanine racemase [Brachyspira hyodysenteriae WA1]
 gi|225215459|gb|ACN84193.1| alanine racemase [Brachyspira hyodysenteriae WA1]
          Length = 366

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 190/371 (51%), Gaps = 26/371 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL+AL  N   + ++  + +   +VK NAYG G  +I+ A    G     V +VEEG+
Sbjct: 8   EIDLSALNKNMQIIKSIIKDVKLLNIVKANAYGHGLIEISKASEKFGADALGVANVEEGI 67

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQV 128
           K+R    +  I VL+     +  ++   NL P+IS+   L +Y K L   G +    ++V
Sbjct: 68  KIREAGVKLPILVLFQHFKDESDLVCKYNLSPIISNDECLEYYDKFLKKNGGNLNLYIKV 127

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLERFRTL 185
           DTG NR+G   ++ +       +     +  I +H A +   DD S    + Q++ F  +
Sbjct: 128 DTGLNRMGAKPEDVVPLAKKVLSYSTLNIEGINTHYAASDMQDDYSVSFTNKQIKVFNDV 187

Query: 186 IS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           ++  +  GI+   A  ++S+ I+   N +F + R GI LYG  D      P   +++ ++
Sbjct: 188 LNDLNENGIKIKNAHTSNSAAIISYKNTYFDMVRAGIILYGYNDDFLGIKP---ILSLKS 244

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++L+R    GE +SYG      +D+ +AV  IGYADG P  LS     ++  V + GK 
Sbjct: 245 HVVLVRTIKKGESISYGMTWTADKDTRVAVIPIGYADGVPRKLS-----NNWEVKINGKY 299

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS--GTTNYDLL 358
           +      P+ G+I MD  + +I +  S+++GD + IFG D KL+   LA+   + ++++L
Sbjct: 300 Y------PLRGRICMDSIIAEIGND-SVKIGDEVLIFGNDEKLNADTLAARIDSISHEVL 352

Query: 359 VRIGTRYAKFY 369
           V IG R  + Y
Sbjct: 353 VNIGERVKRVY 363


>gi|116072169|ref|ZP_01469437.1| alanine racemase [Synechococcus sp. BL107]
 gi|116065792|gb|EAU71550.1| alanine racemase [Synechococcus sp. BL107]
          Length = 375

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 158/316 (50%), Gaps = 21/316 (6%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AVVK + YG G   +A A  + G     V +++EG++LR    +A I +L  +  P   +
Sbjct: 38  AVVKADGYGHGAVTVANAALDGGAASLGVATLQEGLELRQAGLKAPILLLSNLCDPEDLR 97

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
              +  L+P +SS+        L    G      L++DTG +RLG +L +  + T    +
Sbjct: 98  TCLEWQLMPTLSSLADAKLCHALAEDSGRRFQVQLKIDTGMSRLGCALDDGAETTQAIQH 157

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS----HYKGIEASLASSSGILLGPN 207
            K   L  I SHLACADD +  V   Q +RF+++I        G+   LA+S+G LL PN
Sbjct: 158 LKNLDLKGIYSHLACADDRNITVTQQQRQRFQSVIETLPQQGTGLCRHLANSAGTLLEPN 217

Query: 208 YHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
            H+ L R G++LYG    D ++   P+++ +   A++ LIR+  AG  VSYG Q      
Sbjct: 218 LHYDLVRVGLALYGHAPADHLSDIVPLRSALAVRAKVTLIREIKAGTGVSYGHQYISPNS 277

Query: 266 SLIAVAAIGYADGYPLTLSG-LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324
             +AV AIGYADG   +LSG +   H            +   +P +G ITMD  + D TD
Sbjct: 278 RRLAVVAIGYADGVLRSLSGQIQVLH------------RDKRLPQVGAITMDQLLIDATD 325

Query: 325 SLSIEVGDYIQIFGPD 340
           +  +  G  + + G D
Sbjct: 326 APELHPGSIVTLLGRD 341


>gi|262041903|ref|ZP_06015086.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040709|gb|EEW41797.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 356

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 178/369 (48%), Gaps = 42/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL+ N   +   +  +R  AVVK NAYG G  ++  AL  A    F + ++EE + 
Sbjct: 9   IDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSALSAA--DGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQV 128
           LR    +  I +L G     E  + D   +   +SV        L    +  P    L+V
Sbjct: 67  LREQGWKGPILLLEGFFHADELAVLDQYRL--TTSVHSNWQIKALQQAKLRAPLDIYLKV 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++G NRLG   +      H  + +      +G+++L+ SH A A++P   V     E  R
Sbjct: 125 NSGMNRLGFMPER----VHTVWQQLRAISNVGEMTLM-SHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTV 235
            +    +G++   SLA+S+  L  P  HF   RPGI LYG +      D  N    ++ V
Sbjct: 175 RIEQAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTG--LKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++    GE + YGG  + T++  I + A GYADGYP        + +PS  
Sbjct: 233 MTLRSEIIGVQNLRPGEAIGYGGLYRTTQEQRIGIVACGYADGYP--------QVAPS-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y
Sbjct: 283 -GTPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALAPR 350


>gi|326202147|ref|ZP_08192017.1| alanine racemase [Clostridium papyrosolvens DSM 2782]
 gi|325987942|gb|EGD48768.1| alanine racemase [Clostridium papyrosolvens DSM 2782]
          Length = 719

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 189/379 (49%), Gaps = 35/379 (9%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +ID+  LK+N + +  L   + +  AVVK NAYG G  +I+ +L  AGV  F V ++ EG
Sbjct: 353 EIDMDRLKHNVNQLKLLLPHDCQLMAVVKSNAYGHGDIEISKSLNKAGVYAFAVATLSEG 412

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR    +  I +L   HP +  ++   +L     +V    +   L S G+     +++
Sbjct: 413 IELRNNKIKGEILILGYTHPDEAPLLVRYDL---TQTVVDYEYAEILDSTGLKIKVHIKI 469

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHV-NSVQLERFRTL 185
           DTG +RLG    +AL     ++N K   +    +HL+ AD  +PS+ +    Q+++F + 
Sbjct: 470 DTGMHRLG-ETNDALTNLDRTYNCKNLIVGGTYTHLSSADSVEPSNIIFTKEQIKKFYST 528

Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVV 236
           +++ K       +  + SS GIL  P       R GI+LYG   K N+       ++ V+
Sbjct: 529 LNYLKSHNRNPSKIHIQSSYGILNYPELDCDYARVGIALYGVLSKENEKTKIRAALEPVL 588

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +ARI+L ++   GE V YG      + + IAV  IGYADG P +LS            
Sbjct: 589 SLKARIVLTKEIQEGESVGYGRSFIAVKRTKIAVLCIGYADGIPRSLS------------ 636

Query: 297 GGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
            GKG+  IKG   PI+G I MD    DI+D   ++ GD   + G D    I  + VA  +
Sbjct: 637 CGKGYVLIKGKKAPIIGNICMDQLTVDISDIPDVQQGDIATLIGDDGNEAITAEQVASLA 696

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT   +LL R+G R  + Y
Sbjct: 697 GTITNELLSRLGNRIERVY 715


>gi|78042901|ref|YP_359522.1| alanine racemase [Carboxydothermus hydrogenoformans Z-2901]
 gi|85681910|sp|Q9F8I0|ALR_CARHZ RecName: Full=Alanine racemase
 gi|77995016|gb|ABB13915.1| alanine racemase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 368

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 178/375 (47%), Gaps = 27/375 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +++L  +++N+  +  L+  A    V+K NAYG G  ++A AL   G + F V  ++EG+
Sbjct: 7   EVNLENIRHNFREVKRLARQAEAMPVIKANAYGHGAVEVAKALIAEGAKRFAVAILDEGI 66

Query: 70  KLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQ 127
           KLR     A + +L    P + EK++F  NL P +      L +  +L     +  Y L+
Sbjct: 67  KLREAGIDAPVLILGYTPPEEVEKLLF-YNLTPTLHHRELALAYQERLERLKKTLFYHLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG  R+G   +E L+        K  +   + +H A AD+     + +Q+ERF  ++ 
Sbjct: 126 IDTGMGRIGFWYEE-LEKIEEVLKLKNLEAEGVYTHFARADEQDLSFSKLQIERFNIVLK 184

Query: 188 HY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAE 239
           H   KGIE      A+S+ I+  P  H+ L RPGI LYG     D   +   ++  +T +
Sbjct: 185 HLKAKGIEVKYRHAANSAAIMRLPEAHYDLVRPGIMLYGEYPSRDVPRELAHLKPALTLK 244

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           AR+  ++K  AG  VSYG     ++ +LI    +GYADGY   LS             G 
Sbjct: 245 ARVSQVKKVPAGFTVSYGSTYVTSKATLIVSLPLGYADGYFRRLSN-----------RGV 293

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G    I G++ MD  M  + ++  +  GD   + G      I   ++A   GT NY
Sbjct: 294 VLINGKRWSIAGRVCMDQLMVAVDETERVNPGDEAVLLGKQGEETITAMEMADLVGTINY 353

Query: 356 DLLVRIGTRYAKFYT 370
           ++L  I  R  + Y 
Sbjct: 354 EILTNISYRVPRIYV 368


>gi|116748009|ref|YP_844696.1| alanine racemase [Syntrophobacter fumaroxidans MPOB]
 gi|189027394|sp|A0LFQ9|ALR_SYNFM RecName: Full=Alanine racemase
 gi|116697073|gb|ABK16261.1| alanine racemase [Syntrophobacter fumaroxidans MPOB]
          Length = 375

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 176/374 (47%), Gaps = 24/374 (6%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL++N+  +   L+  +R   VVK +AYG G   +A  L   G     V+   E
Sbjct: 6   VEIDLAALRHNYSRAKERLAPGSRILGVVKSDAYGHGMIPVARELVACGASFLAVSKHWE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
            V LR    +  I  L G+ P +        + PVI  +      S    S   +    +
Sbjct: 66  AVDLRAAGIRLPILCLLGVEPSEMAEAIRNEIRPVIYRIDHARRLSDTARSLNATATVHV 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG  RLG+  +    F +        +L  ++SH A AD+     +++QL RFR  +
Sbjct: 126 KLDTGMGRLGIPCRHLEAFLNELLTLPAIRLEGVLSHFASADEADKTSSTLQLTRFREAM 185

Query: 187 S--HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEA 240
           +    +G+     +A+S+G+L  P  HF L RPGI LYG    +    P  ++ V+T ++
Sbjct: 186 ALLSARGLSVLGHIANSAGLLDLPQAHFDLARPGIMLYGSPPSLELHKPADLRPVMTFKS 245

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II ++   AG+ + YGG         IA   +GY DGYP  LS             G+ 
Sbjct: 246 KIIQLKDVQAGQPIGYGGTFVTAAPGRIATIPVGYDDGYPRLLSNR-----------GRV 294

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            ++G   P++G+++M+M   D+T   S    D + + G      +  +++A   GT +Y+
Sbjct: 295 LVRGMSAPVVGRVSMNMITADVTHIPSAREDDEVVLLGAQGTERVTAEEIAQLCGTISYE 354

Query: 357 LLVRIG-TRYAKFY 369
           +   IG  R+  F+
Sbjct: 355 IYCSIGRNRFKSFH 368


>gi|206580802|ref|YP_002237825.1| alanine racemase [Klebsiella pneumoniae 342]
 gi|206569860|gb|ACI11636.1| alanine racemase [Klebsiella pneumoniae 342]
          Length = 356

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 178/369 (48%), Gaps = 42/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL+ N   +   +  +R  AVVK NAYG G  ++  AL  +G   F + ++EE + 
Sbjct: 9   IDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSAL--SGADGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQV 128
           LR    +  I +L G     E  + D   +   +SV        L    +  P    L+V
Sbjct: 67  LREQGWKGPILLLEGFFHADELAVLDQYRL--TTSVHSNWQIKALQQAKLRAPLDIYLKV 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++G NRLG   +      H  + +      +G+++L+ SH A A++P   V     E  R
Sbjct: 125 NSGMNRLGFMPER----VHTVWQQLRAISNVGEMTLM-SHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTV 235
            +    +G++   SLA+S+  L  P  HF   RPGI LYG +      D  N    ++ V
Sbjct: 175 RIEQAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTG--LKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + +I ++    GE + YGG  + +++  I + A GYADGYP          +PS  
Sbjct: 233 MTLRSEVIGVQNLRPGEAIGYGGLYRTSQEQRIGIVACGYADGYPRV--------APS-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y
Sbjct: 283 -GTPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALAPR 350


>gi|16129153|ref|NP_415708.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108035|ref|AP_001815.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr.
           W3110]
 gi|170080818|ref|YP_001730138.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238900421|ref|YP_002926217.1| alanine racemase 2, PLP-binding [Escherichia coli BW2952]
 gi|256023134|ref|ZP_05436999.1| alanine racemase [Escherichia sp. 4_1_40B]
 gi|300951652|ref|ZP_07165476.1| alanine racemase [Escherichia coli MS 116-1]
 gi|300955586|ref|ZP_07167944.1| alanine racemase [Escherichia coli MS 175-1]
 gi|301029512|ref|ZP_07192593.1| alanine racemase [Escherichia coli MS 196-1]
 gi|2506172|sp|P29012|ALR2_ECOLI RecName: Full=Alanine racemase, catabolic
 gi|1651592|dbj|BAA36045.1| alanine racemase 2, PLP-binding [Escherichia coli str. K12 substr.
           W3110]
 gi|1787439|gb|AAC74274.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr.
           MG1655]
 gi|169888653|gb|ACB02360.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238859950|gb|ACR61948.1| alanine racemase 2, PLP-binding [Escherichia coli BW2952]
 gi|260449676|gb|ACX40098.1| alanine racemase [Escherichia coli DH1]
 gi|299877620|gb|EFI85831.1| alanine racemase [Escherichia coli MS 196-1]
 gi|300317515|gb|EFJ67299.1| alanine racemase [Escherichia coli MS 175-1]
 gi|300449098|gb|EFK12718.1| alanine racemase [Escherichia coli MS 116-1]
 gi|309701490|emb|CBJ00797.1| alanine racemase, catabolic [Escherichia coli ETEC H10407]
 gi|315135826|dbj|BAJ42985.1| alanine racemase [Escherichia coli DH1]
 gi|323937908|gb|EGB34172.1| alanine racemase [Escherichia coli E1520]
 gi|323942468|gb|EGB38636.1| alanine racemase [Escherichia coli E482]
 gi|332342769|gb|AEE56103.1| alanine racemase [Escherichia coli UMNK88]
          Length = 356

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  A+   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISGAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|74311720|ref|YP_310139.1| alanine racemase [Shigella sonnei Ss046]
 gi|73855197|gb|AAZ87904.1| alanine racemase 2, catabolic [Shigella sonnei Ss046]
 gi|323165267|gb|EFZ51055.1| alanine racemase [Shigella sonnei 53G]
          Length = 356

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISSAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALVLR 350


>gi|289164180|ref|YP_003454318.1| alanine racemase 1, PLP-binding, biosynthetic [Legionella
           longbeachae NSW150]
 gi|288857353|emb|CBJ11181.1| alanine racemase 1, PLP-binding, biosynthetic [Legionella
           longbeachae NSW150]
          Length = 359

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 187/372 (50%), Gaps = 39/372 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+ +AL +N   +   +   +  A+VK NAYG G   +AP L    V  F V  +EE
Sbjct: 6   RLVIEPSALLHNLEQIKRFAPGKKIIAMVKANAYGCGVHIVAPVL-EGHVDAFGVACIEE 64

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + L     +    +  G+  P + KI+       VI    QL +   L++  ++ P  L
Sbjct: 65  ALILHKIGSRTPCILFQGVFSPDEFKIVAQHQFGCVIHQPHQLQW---LLNTPLNTPIKL 121

Query: 127 --QVDTGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             +V+TG +RLG   QE  +      T    +K +G    +++HLACAD+P    N  Q+
Sbjct: 122 WVKVNTGMHRLGFKPQELHEVMSALQTCTWVDKDIG----LMTHLACADEPERIENYQQI 177

Query: 180 ERFRTL-ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH------PM 232
             F  + I+ +   + S+A+S+ I+  P  H  + RPGI LYG +   N++       P+
Sbjct: 178 SLFENISITGFS--QRSIANSAAIISFPQTHADVVRPGIMLYGVSPFANQTSIELGLLPV 235

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              V+A   I  +        V Y G  K  + S+I + A GY DGYP  ++    E++P
Sbjct: 236 MRFVSA---ISAVHHNPPFAPVGYSGIWKSEKHSVIGIVAAGYGDGYPRHIA----ENTP 288

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                   +++G  VPI+G+++MDM   D+T+   ++ G  ++++G +I ++ VA A+GT
Sbjct: 289 V-------WVQGKEVPIVGRVSMDMLAVDLTEHQEVKPGAPVELWGKNILVERVAKAAGT 341

Query: 353 TNYDLLVRIGTR 364
           + Y+LL +I  R
Sbjct: 342 SGYELLCQISER 353


>gi|257058805|ref|YP_003136693.1| alanine racemase [Cyanothece sp. PCC 8802]
 gi|256588971|gb|ACU99857.1| alanine racemase [Cyanothece sp. PCC 8802]
          Length = 403

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 180/385 (46%), Gaps = 29/385 (7%)

Query: 2   HSNEFLR----LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           H +E +R    ++I+  AL +N   +  L S      AVVK +AYG G  K+A    +AG
Sbjct: 18  HLSEIIRQRAWVEINQQALIHNVAEIKGLLSPKTALMAVVKADAYGHGAIKVAQTALDAG 77

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQ-LTFYSK 114
                + ++ EG++LR     A I +L  I+ P +   I    L P + +  Q L F   
Sbjct: 78  ANGLAIATLGEGIELREAGITAPILILGAINTPEEIAAIAQWQLQPTLCNPQQALIFSGT 137

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L   G + P  L++DTG +RLG    +A DF          +++ I SHLA ADDP    
Sbjct: 138 LSKLGQTLPVHLKLDTGMSRLGTPWHQATDFVRLVQQLPYLKIATIYSHLATADDPDRSE 197

Query: 175 NSVQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
              Q  RF+  I+  K     L     A+S+  L+ PN H+ L R G++LYG      + 
Sbjct: 198 MERQHRRFKQAIAQLKSHGLPLPPLHFANSAATLVNPNLHYDLVRVGLALYGLYPAPHLR 257

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+  +A++  ++    G  VSYG Q    R   +AV  IGYADG P  LS   
Sbjct: 258 SFADLKPVLQVKAKVTQVKTIPPGTGVSYGYQFVSDRTMDVAVVGIGYADGVPRNLSN-- 315

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      +  I+G  V  +G ITMD  M D++   +++VG+ + + G D    I  
Sbjct: 316 ---------RLEVLIRGQRVRQIGAITMDQLMLDVSAIPNLQVGEVVTLIGKDGDQEITA 366

Query: 344 DDVALASGTTNYDLLVRIGTRYAKF 368
           DD A   GT ++++L     R  + 
Sbjct: 367 DDWANKLGTISWEILCGFKHRLPRI 391


>gi|152970855|ref|YP_001335964.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238895366|ref|YP_002920101.1| alanine racemase [Klebsiella pneumoniae NTUH-K2044]
 gi|150955704|gb|ABR77734.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238547683|dbj|BAH64034.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 356

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 177/369 (47%), Gaps = 42/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL+ N   +   +  +R  AVVK NAYG G  ++  AL  A    F + ++EE + 
Sbjct: 9   IDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSALSAA--DGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQV 128
           LR    +  I +L G     E  + D   +   +SV        L    +  P    L+V
Sbjct: 67  LREQGWKGPILLLEGFFHADELAVLDQYRL--TTSVHSNWQIKALQQAKLRAPLDIYLKV 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++G NRLG   +      H  + +      +G+++L+ SH A A++P   V     E  R
Sbjct: 125 NSGMNRLGFMPER----VHTVWQQLRAISNVGEMTLM-SHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTV 235
            +    +G++   SLA+S+  L  P  HF   RPGI LYG +      D  N    ++ V
Sbjct: 175 RIEQAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTG--LKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++    GE + YGG  + T++  I + A GYADGYP          +PS  
Sbjct: 233 MTLRSEIIGVQNLRPGEAIGYGGLYRTTQEQRIGIVACGYADGYPRV--------APS-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y
Sbjct: 283 -GTPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALAPR 350


>gi|15801412|ref|NP_287429.1| alanine racemase [Escherichia coli O157:H7 EDL933]
 gi|168750754|ref|ZP_02775776.1| alanine racemase [Escherichia coli O157:H7 str. EC4113]
 gi|168756556|ref|ZP_02781563.1| alanine racemase [Escherichia coli O157:H7 str. EC4401]
 gi|168764385|ref|ZP_02789392.1| alanine racemase [Escherichia coli O157:H7 str. EC4501]
 gi|168771082|ref|ZP_02796089.1| alanine racemase [Escherichia coli O157:H7 str. EC4486]
 gi|168777795|ref|ZP_02802802.1| alanine racemase [Escherichia coli O157:H7 str. EC4196]
 gi|168782549|ref|ZP_02807556.1| alanine racemase [Escherichia coli O157:H7 str. EC4076]
 gi|168802076|ref|ZP_02827083.1| alanine racemase [Escherichia coli O157:H7 str. EC508]
 gi|195938845|ref|ZP_03084227.1| alanine racemase [Escherichia coli O157:H7 str. EC4024]
 gi|208808683|ref|ZP_03251020.1| alanine racemase [Escherichia coli O157:H7 str. EC4206]
 gi|208815621|ref|ZP_03256800.1| alanine racemase [Escherichia coli O157:H7 str. EC4045]
 gi|208822589|ref|ZP_03262908.1| alanine racemase [Escherichia coli O157:H7 str. EC4042]
 gi|209396444|ref|YP_002270130.1| alanine racemase [Escherichia coli O157:H7 str. EC4115]
 gi|217328528|ref|ZP_03444610.1| alanine racemase [Escherichia coli O157:H7 str. TW14588]
 gi|254792667|ref|YP_003077504.1| alanine racemase [Escherichia coli O157:H7 str. TW14359]
 gi|291282205|ref|YP_003499023.1| Alanine racemase, catabolic [Escherichia coli O55:H7 str. CB9615]
 gi|20137340|sp|Q8X4I9|ALR2_ECO57 RecName: Full=Alanine racemase, catabolic
 gi|12514890|gb|AAG56041.1|AE005336_2 alanine racemase 2, catabolic [Escherichia coli O157:H7 str.
           EDL933]
 gi|187767039|gb|EDU30883.1| alanine racemase [Escherichia coli O157:H7 str. EC4196]
 gi|188015110|gb|EDU53232.1| alanine racemase [Escherichia coli O157:H7 str. EC4113]
 gi|189000041|gb|EDU69027.1| alanine racemase [Escherichia coli O157:H7 str. EC4076]
 gi|189356318|gb|EDU74737.1| alanine racemase [Escherichia coli O157:H7 str. EC4401]
 gi|189360063|gb|EDU78482.1| alanine racemase [Escherichia coli O157:H7 str. EC4486]
 gi|189365594|gb|EDU84010.1| alanine racemase [Escherichia coli O157:H7 str. EC4501]
 gi|189375882|gb|EDU94298.1| alanine racemase [Escherichia coli O157:H7 str. EC508]
 gi|208728484|gb|EDZ78085.1| alanine racemase [Escherichia coli O157:H7 str. EC4206]
 gi|208732269|gb|EDZ80957.1| alanine racemase [Escherichia coli O157:H7 str. EC4045]
 gi|208738074|gb|EDZ85757.1| alanine racemase [Escherichia coli O157:H7 str. EC4042]
 gi|209157844|gb|ACI35277.1| alanine racemase [Escherichia coli O157:H7 str. EC4115]
 gi|217318955|gb|EEC27381.1| alanine racemase [Escherichia coli O157:H7 str. TW14588]
 gi|254592067|gb|ACT71428.1| alanine racemase 2, PLP-binding [Escherichia coli O157:H7 str.
           TW14359]
 gi|290762078|gb|ADD56039.1| Alanine racemase, catabolic [Escherichia coli O55:H7 str. CB9615]
 gi|320187974|gb|EFW62641.1| Alanine racemase, catabolic [Escherichia coli O157:H7 str. EC1212]
 gi|320637335|gb|EFX07142.1| alanine racemase [Escherichia coli O157:H7 str. G5101]
 gi|320643196|gb|EFX12397.1| alanine racemase [Escherichia coli O157:H- str. 493-89]
 gi|320648133|gb|EFX16809.1| alanine racemase [Escherichia coli O157:H- str. H 2687]
 gi|320653967|gb|EFX22041.1| alanine racemase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320664583|gb|EFX31734.1| alanine racemase [Escherichia coli O157:H7 str. LSU-61]
 gi|326342729|gb|EGD66499.1| Alanine racemase, catabolic [Escherichia coli O157:H7 str. 1044]
 gi|326346421|gb|EGD70158.1| Alanine racemase, catabolic [Escherichia coli O157:H7 str. 1125]
          Length = 356

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  ++D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|323953960|gb|EGB49759.1| alanine racemase [Escherichia coli H263]
          Length = 356

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  A+   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAI---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|172038632|ref|YP_001805133.1| alanine racemase [Cyanothece sp. ATCC 51142]
 gi|171700086|gb|ACB53067.1| alanine racemase [Cyanothece sp. ATCC 51142]
          Length = 404

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 185/388 (47%), Gaps = 35/388 (9%)

Query: 2   HSNEFLR----LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           H +E +R    ++IDL+AL +N   +  L S      AVVK +AYG G   +A  +  AG
Sbjct: 19  HLSEIIRQRAWVEIDLSALSHNVVQIKQLLSPKTTLMAVVKADAYGHGAIAVAQTVLQAG 78

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKL 115
            +   V ++ EG++LR     A I +L  I+ P +   I   NL P +    Q    S  
Sbjct: 79  AKALAVATLGEGIELREAGITAPILILGAINTPEEITAIAHWNLEPTLCYPEQALMVSDT 138

Query: 116 MSCGVSHPYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPS 171
           +S     P +  L++DTG +RLG    +  +F   S  ++L  L+L  + SHLA ADDP 
Sbjct: 139 LS-QYEKPLSVHLKLDTGMSRLGTPWHQGTEFA--SLVQQLPYLNLSSVYSHLATADDPD 195

Query: 172 SHVNSVQLERFRTLISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYG--GTD 224
                +Q +RF+T I + K  GI       A+S+  L+ P  H+ L R G++LYG    D
Sbjct: 196 PSHMYLQHKRFKTAIDNLKAQGIVPPRLHFANSAATLIAPQLHYDLVRVGLALYGLYPAD 255

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            +    P++ V+  +A+I  I+   A   VSYG Q    R   IAV  IGYADG P  LS
Sbjct: 256 HLRSIVPLKPVLQVKAKITQIKSIPANTGVSYGYQFVSDRPMKIAVVGIGYADGVPRNLS 315

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                         +  I G     +G ITMD  M D++    ++VGD + + G D    
Sbjct: 316 N-----------RLQVLIHGQRACQIGAITMDQLMLDVSHLRHVKVGDVVTLIGKDEDQE 364

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKF 368
           I  D  A   GT ++++L     R  + 
Sbjct: 365 ISADHWAKMLGTISWEILCGFKHRLPRI 392


>gi|320322231|gb|EFW78327.1| alanine racemase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 357

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 38/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + N   V+ S  QL     +    ++ P   
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELALIVEHNFWTVVHSTWQL---EAIEQAQLAKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++DTG +R+GL   E       ++ + L  G+++ I+  SH A AD+ +S  +    E
Sbjct: 120 WLKIDTGMHRVGLYPHE----YQAAYQRLLVTGKVARIVLMSHFARADELNSGCSD---E 172

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QT 234
           +F    S  KG+  E SL +S  +L  P+     +RPGI LYG T    ++HP+    Q 
Sbjct: 173 QFAVFESFRKGLAAEISLKNSPAVLGWPHIPSDWSRPGIMLYGAT-PFGQAHPLADRLQP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T E++II +R+  AGE V YG      R   I V A+GYADGYP         H+P+ 
Sbjct: 232 VMTLESKIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYP--------RHAPT- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  
Sbjct: 283 --GTPVQIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIP 340

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++   +  R  + Y+
Sbjct: 341 YEIFCNL-RRVPRIYS 355


>gi|326790617|ref|YP_004308438.1| alanine racemase [Clostridium lentocellum DSM 5427]
 gi|326541381|gb|ADZ83240.1| alanine racemase [Clostridium lentocellum DSM 5427]
          Length = 379

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 190/386 (49%), Gaps = 37/386 (9%)

Query: 5   EFLRL--KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           E LR   +I+L+ L++N   +   L    +  AVVK +AYG G  +++  L   G++ F 
Sbjct: 9   ELLRAYSEINLSNLEHNLGQLQEQLPAMCKVIAVVKADAYGHGAVQVSRHLQRLGIEHFA 68

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           V S++E ++LR+   +  I VL G  P   +E +I+      +  ++   ++  K+    
Sbjct: 69  VASIDEAIELRINQIEGEILVL-GYTPIGRREDLIY----YHITQALIDESYAEKISKGK 123

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNS 176
                 +++DTG NRLGL     LD     + K+  +++   SHL+ AD   D       
Sbjct: 124 GRLRVHIKLDTGMNRLGLRATN-LDALMAIYRKENLEITGTFSHLSRADSLCDEDKSFTE 182

Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKIN 227
            Q++ F  +I     +H +  +  L SS GI+  P     L RPGI LYG +    + I 
Sbjct: 183 YQIKTFYEIIGSLKKNHIEVGKTHLQSSYGIINYPQIKCDLARPGILLYGVSSNPEENIA 242

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           +   ++ V++  A++  I+    GE V YG   K+ ++S+IA+  IGYADGYP  LS   
Sbjct: 243 ERLDVRPVLSLRAKVGSIKHVDKGETVGYGNHFKVEKESVIAIVTIGYADGYPRYLSK-- 300

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                    G K  I+G  VPI+G + MD  + D+T    I+VG  + + G D    + +
Sbjct: 301 --------RGCKVLIRGREVPIIGNVCMDQMIVDVTSLNDIKVGSQVTLIGKDEEAYLSV 352

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + ++L + T N + L  IG R  K Y
Sbjct: 353 NQISLLTNTINNETLTGIGQRVKKVY 378


>gi|91210403|ref|YP_540389.1| alanine racemase [Escherichia coli UTI89]
 gi|117623404|ref|YP_852317.1| alanine racemase [Escherichia coli APEC O1]
 gi|218558114|ref|YP_002391027.1| alanine racemase [Escherichia coli S88]
 gi|237705146|ref|ZP_04535627.1| alanine racemase 2 [Escherichia sp. 3_2_53FAA]
 gi|91071977|gb|ABE06858.1| alanine racemase 2, catabolic [Escherichia coli UTI89]
 gi|115512528|gb|ABJ00603.1| alanine racemase 2, catabolic [Escherichia coli APEC O1]
 gi|218364883|emb|CAR02579.1| alanine racemase 2, PLP-binding [Escherichia coli S88]
 gi|222032985|emb|CAP75725.1| lanine racemase, catabolic [Escherichia coli LF82]
 gi|226899903|gb|EEH86162.1| alanine racemase 2 [Escherichia sp. 3_2_53FAA]
 gi|294490907|gb|ADE89663.1| alanine racemase [Escherichia coli IHE3034]
 gi|307627292|gb|ADN71596.1| alanine racemase [Escherichia coli UM146]
 gi|312945816|gb|ADR26643.1| alanine racemase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315288597|gb|EFU47995.1| alanine racemase [Escherichia coli MS 110-3]
 gi|323949699|gb|EGB45585.1| alanine racemase [Escherichia coli H252]
          Length = 356

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  A+   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAI---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|157963394|ref|YP_001503428.1| alanine racemase [Shewanella pealeana ATCC 700345]
 gi|254802379|sp|A8H8K6|ALR_SHEPA RecName: Full=Alanine racemase
 gi|157848394|gb|ABV88893.1| alanine racemase [Shewanella pealeana ATCC 700345]
          Length = 358

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 182/372 (48%), Gaps = 32/372 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I   ALKNN   ++ L+ +++  AVVK N YG G   +A  L NA    F +  +
Sbjct: 4   FPRAEISRHALKNNLARLHELAPSSKVMAVVKANGYGHGLLNVAQCLDNA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +A++ +L G     + + + + ++  V+    Q+     L    ++ P 
Sbjct: 62  EEALALRAGGVKAKLLLLEGFFRATDLVTLVEHDIETVVHHESQIEM---LEQAELNKPV 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-----IISHLACADDPSSHVNSV 177
              ++VD+G +RLG    E     H  + + L   ++     +++H ACAD+P +   + 
Sbjct: 119 TVWMKVDSGMHRLGFVPDE----FHQIYQRLLACDNIAKPINLMTHFACADEPDNDCTAK 174

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQT 234
           Q+  F  L     G + +LA+S+G L          RPGI+LYG +     +   H +  
Sbjct: 175 QIAVFEELTKDLLG-DRTLANSAGALFWQQSQASWIRPGIALYGVSPVVGDLGTKHGLIP 233

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   +++I IR   AG+ V YG      +D+ + V AIGY DGYP         ++P  
Sbjct: 234 AMELVSQLIAIRDHKAGQPVGYGSHWVAEKDTKLGVVAIGYGDGYP--------RNAP-- 283

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
            LG    I G + PI+G+++MDM   D+       VGD   ++G D+ +++VA   GT  
Sbjct: 284 -LGTPVLINGRLAPIVGRVSMDMLTVDLGAGAKDNVGDKAVLWGKDLPVEEVAEHIGTIA 342

Query: 355 YDLLVRIGTRYA 366
           Y+L+ ++  R A
Sbjct: 343 YELVTKLTPRVA 354


>gi|218549113|ref|YP_002382904.1| alanine racemase [Escherichia fergusonii ATCC 35469]
 gi|218356654|emb|CAQ89280.1| alanine racemase 2, PLP-binding [Escherichia fergusonii ATCC 35469]
 gi|324113955|gb|EGC07929.1| alanine racemase [Escherichia fergusonii B253]
 gi|325497535|gb|EGC95394.1| alanine racemase [Escherichia fergusonii ECD227]
          Length = 356

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 183/371 (49%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL  A    F + ++E
Sbjct: 5   IQASVDLQALKQNLAIVRRAAPDARVWSVVKANAYGHGIERIWNAL--ASTDGFALLNIE 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           + V LR    +  I +L G     +  ++D   L   + S  QL     L +  ++ P  
Sbjct: 63  DAVTLRERGWKGPILMLEGFFHADDLAVYDKYRLTTSVHSNWQL---KALQNARLNAPLD 119

Query: 126 L--QVDTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDPSSHVNSVQLER 181
           +  +V++G NRLG    E +            +G+++L+ SH A A+ P   V +  LE+
Sbjct: 120 IYVKVNSGMNRLGFP-PEKIPTVWQQLRGMSNVGEMTLM-SHFADAEHPEGIVQA--LEK 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SLA+S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 VE---QASEGMECRRSLANSAATLWHPQAHFDWVRPGIILYGASPTGHWCDIANTG--LK 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AG+ V YGG+   + +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGDRVGYGGRYTASGEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTITVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|332994605|gb|AEF04660.1| alanine racemase [Alteromonas sp. SN2]
          Length = 355

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 178/361 (49%), Gaps = 21/361 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   A+ +N+  +  L+  +R+ AVVK +AYG G   ++  L +   + F V  +EE + 
Sbjct: 9   IHADAILSNFKLLAELAPTSRSMAVVKADAYGHGAVNVSRILQHVSPR-FAVAIIEEAIA 67

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSH--PYALQ 127
           LR     A I VL G H  +E  +  ++  I V+ +  QL +   +++C         L+
Sbjct: 68  LREAGITAPIVVLEGAHQAKECAMAASHGCILVMHNQAQLEW---MLACPEDRRPTIWLK 124

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            D+G +RLG  L   L      +   + Q +++++HLACADD S+     QL  F  + +
Sbjct: 125 ADSGMHRLGFVLN-TLPSIVKQYASLITQDTVLVTHLACADDTSNDFTQKQLSAFLQIAT 183

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  S+A+S   +  P       R GI++YGG      +  +   +T  + II +R 
Sbjct: 184 QL-ALPVSIANSPATIEWPQSRGDWNRLGIAVYGGQPN-TANVALAPTMTLRSSIIALRD 241

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      +DS IA   IGYADGYP         H P+   G    + G   
Sbjct: 242 VPKGESVGYGQNWVAQKDSRIATVGIGYADGYP--------RHCPN---GTPVAVNGERA 290

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
            + G+++MDM   D+T   ++ +GD ++++G ++ +++VA A+ + +Y+LL R+  R  +
Sbjct: 291 GLAGRVSMDMITIDVTHISNVNIGDRVELWGENVPINEVAEAADSIDYELLTRVSARVPR 350

Query: 368 F 368
            
Sbjct: 351 I 351


>gi|91791886|ref|YP_561537.1| alanine racemase [Shewanella denitrificans OS217]
 gi|122968993|sp|Q12RW2|ALR_SHEDO RecName: Full=Alanine racemase
 gi|91713888|gb|ABE53814.1| alanine racemase [Shewanella denitrificans OS217]
          Length = 363

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 184/376 (48%), Gaps = 36/376 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP--ALYNAGVQDFFVT 63
           F R +I   AL+ N   +  L+  ++  AVVK N YG G   +A   A Y+ G   F + 
Sbjct: 4   FPRAEISRKALQANLARIRELAPQSKIMAVVKANGYGHGLLNVANSVATYDQGADGFGLA 63

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI------SSVPQLTFYSKLMS 117
            +EE ++LR     AR+ +L G         F    +P++      + V   +    L  
Sbjct: 64  RLEEALELRSGGVNARLLLLEGF--------FRVTDLPLLVQHHIDTVVHHESQVEMLEQ 115

Query: 118 CGVSHPYA--LQVDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSH 173
             ++ P    +++DTG +RLG SL +  D  +        + +   +++H AC+D+P + 
Sbjct: 116 AELTTPVTVWMKIDTGMHRLGFSLAQ-FDAIYQRLLACHNIAKPIHLMTHFACSDEPDNS 174

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SH 230
               Q++ F ++ +   G + SLA+S G+L  P       R GI+LYG +  +     +H
Sbjct: 175 FTQAQIDAFESVTASLDG-DRSLANSGGMLFWPQSQRDWIRAGIALYGVSPMVGDKGGNH 233

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +   +  ++++I ++   AG+ V YG   +  +D+ I V AIGY DGYP         H
Sbjct: 234 GLVPAMELKSQLISVKDHQAGDSVGYGAFWRARKDTRIGVVAIGYGDGYP--------RH 285

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
           +P    G   ++ G  VPI+G+++MDM   D+      +VGD + ++G  + +++VA   
Sbjct: 286 APE---GTPVWLNGRRVPIVGRVSMDMLTVDLGLDSQDKVGDEVLLWGSALAVEEVADHI 342

Query: 351 GTTNYDLLVRIGTRYA 366
           GT  Y+L+ ++  R A
Sbjct: 343 GTIAYELVTKLTPRVA 358


>gi|28867343|ref|NP_789962.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28850577|gb|AAO53657.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331018536|gb|EGH98592.1| alanine racemase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 357

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 187/374 (50%), Gaps = 34/374 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  R  AV+K +AYG G   +A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARDSSGG-RALAVIKADAYGHGAVHVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A I +L G     E  +I + +L  V+ ++ QL    +    G      L
Sbjct: 63  ALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHAIWQLEAIEQ-AQLGKPLTVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLERF 182
           ++DTG +R+GL   E       ++ + L  G+++ ++  SH +CAD+ +S  +  Q+  F
Sbjct: 122 KLDTGMHRVGLHPSE----YRAAYQRLLATGKVARVVLMSHFSCADELNSACSDQQVAVF 177

Query: 183 RTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVV 236
               +  +G+  E SL +S  ++  P      +R GI LYG T   +++ P+    Q V+
Sbjct: 178 E---AARQGLVAETSLKNSPAVMGWPKIPSDWSRTGIMLYGAT-PFDQTQPLAERLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+++I +R+  AGE V YG      R   I V A+GYADGYP         H+P+   
Sbjct: 234 TLESKVISVRELPAGEAVGYGATFVSERPLRIGVVAMGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  +GT  Y 
Sbjct: 283 GTPVLIDGQRSRLLGRVSMDMLCVDLTDVPQAGLGSRVELWGKAVLASEVATQAGTIPYQ 342

Query: 357 LLVRIGTRYAKFYT 370
           +   +  R  + Y+
Sbjct: 343 IFCNL-RRVPRIYS 355


>gi|229816616|ref|ZP_04446914.1| hypothetical protein COLINT_03673 [Collinsella intestinalis DSM
           13280]
 gi|229807822|gb|EEP43626.1| hypothetical protein COLINT_03673 [Collinsella intestinalis DSM
           13280]
          Length = 383

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 177/382 (46%), Gaps = 36/382 (9%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +ID  AL+ N  +  +L G   R   VVK +AYG G    A  ++ AG   F V +V EG
Sbjct: 15  EIDTGALRRNTRAFKSLVGPRQRLCCVVKADAYGHGVANCAKVMHAAGADMFAVATVLEG 74

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYAL 126
           V LR    +  I +L     G    + + +++P + S P+  +    +  + G    Y +
Sbjct: 75  VALREAGQKLPILLLSEPPQGAIDTLLEYDIMPSVYS-PEFAWAYGERAAALGRVGKYHM 133

Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            ++TG NR+G+   E +DF  +  F+  L +     +H A ADDP    + +Q +RF   
Sbjct: 134 AINTGMNRIGVHCTEVVDFRRSVDFHAGL-ECDGTFTHFATADDPDGWDHQLQCKRFTEA 192

Query: 186 ISHYK--GIEASLA---SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           IS  +  G +  +    ++ G +L P  HF + R GI LYG    ++     P++ V++ 
Sbjct: 193 ISALREAGFDPGIVHCDNTPGSVLNPAMHFDMIRAGIGLYGLQPCERTASVLPLEPVMSI 252

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSG-LDSEHSPSVFL 296
            AR+        GE V YG   ++ R  + +    IGYADG P  LS  +D         
Sbjct: 253 RARVTHACYPAMGEGVGYGFTYRVPRTRVEVCTLPIGYADGLPRVLSNRMDV-------- 304

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITD-----SLSIEVGDYIQIFGPD----IKLDDVA 347
                 +G  +  +G I MD  M  +++     +   EVGD + I G D    I LD++A
Sbjct: 305 ----LFRGERIRQVGNICMDQCMVAVSETSLRPTQEAEVGDLMTIVGRDGDAQITLDELA 360

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
            A GT NY+L    G R  K Y
Sbjct: 361 RACGTINYELACGFGMRLEKIY 382


>gi|331657235|ref|ZP_08358197.1| alanine racemase [Escherichia coli TA206]
 gi|315297316|gb|EFU56596.1| alanine racemase [Escherichia coli MS 16-3]
 gi|331055483|gb|EGI27492.1| alanine racemase [Escherichia coli TA206]
          Length = 356

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 181/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P    +++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISSAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RVDQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|290508880|ref|ZP_06548251.1| alanine racemase [Klebsiella sp. 1_1_55]
 gi|289778274|gb|EFD86271.1| alanine racemase [Klebsiella sp. 1_1_55]
          Length = 356

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 177/369 (47%), Gaps = 42/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL+ N   +   +  +R  AVVK NAYG G  ++  AL  +G   F + ++EE + 
Sbjct: 9   IDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSAL--SGADGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQV 128
           LR    +  I +L G     E  + D   +   +SV        L    +  P    L+V
Sbjct: 67  LREQGWKGPILLLEGFFHADELAVLDQYRL--TTSVHSNWQIKALQQAKLRAPLDIYLKV 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++G NRLG   +      H  + +      +G+++L+ SH A A++P   V     E  R
Sbjct: 125 NSGMNRLGFMPER----VHTVWQQLRAISNVGEMTLM-SHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTV 235
            +    +G+    SLA+S+  L  P  HF   RPGI LYG +      D  N    ++ V
Sbjct: 175 RIEQAAEGLNCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTG--LKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++    GE + YGG  + +++  I + A GYADGYP          +PS  
Sbjct: 233 MTLRSEIIGVQNLRPGEAIGYGGLYRTSQEQRIGIVACGYADGYPRV--------APS-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y
Sbjct: 283 -GTPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALAPR 350


>gi|229593333|ref|YP_002875452.1| alanine racemase [Pseudomonas fluorescens SBW25]
 gi|229365199|emb|CAY53479.1| alanine racemase, catabolic [Pseudomonas fluorescens SBW25]
          Length = 357

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 192/375 (51%), Gaps = 36/375 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     ++G A+  AVVK +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLAREVTG-AKALAVVKADAYGHGAVRVAQAL-EADADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + +L  V+ S+ QL     +    +  P   
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELPLILEHDLWCVVHSLWQL---EAIEQAQLRTPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++D+G +R+GL  +   DF H ++ + L  G+++ I+  SH A AD+     +  Q+ 
Sbjct: 120 WLKLDSGMHRVGLHPK---DF-HEAYQRLLASGKVAKIVLMSHFARADELDCVSSDEQVA 175

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235
            F    +  +G+  E SL +S  +L  P+      RPGI LYG T   +    +  +Q V
Sbjct: 176 VFE---AARQGLSAEVSLRNSPSVLGWPSVSSDWVRPGIMLYGATPFGEDQALAARLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+++I +R+  AGE V YG +    +   I V A+GYADGYP         H+P+  
Sbjct: 233 MTLESKVICVRELPAGEPVGYGAKFITPKPMRIGVVAMGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    +LG+++MDM   D+TD     +G  ++++G +I   D+A A+ T  Y
Sbjct: 283 -GTPVLVAGQRSQLLGRVSMDMLCVDLTDVPQAGLGATVELWGKNILASDIATAAETIPY 341

Query: 356 DLLVRIGTRYAKFYT 370
            +   +  R  + Y+
Sbjct: 342 QIFCNL-RRVPRLYS 355


>gi|320331880|gb|EFW87818.1| alanine racemase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330873077|gb|EGH07226.1| alanine racemase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 357

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 38/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + N   V+ S  QL     +    ++ P   
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELALIVEHNFWMVVHSTWQL---EAIEQAQLAKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++DTG +R+GL   E       ++ + L  G+++ I+  SH A AD+ +S  +    E
Sbjct: 120 WLKIDTGMHRVGLYPHE----YQAAYQRLLVTGKVARIVLMSHFARADELNSGCSD---E 172

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QT 234
           +F    S  KG+  E SL +S  +L  P+     +RPGI LYG T    ++HP+    Q 
Sbjct: 173 QFAVFESFRKGLAAEISLKNSPAVLGWPHIPSDWSRPGIMLYGAT-PFGQAHPLADRLQP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T E++II +R+  AGE V YG      R   I V A+GYADGYP         H+P+ 
Sbjct: 232 VMTLESKIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYP--------RHAPT- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  
Sbjct: 283 --GTPVQIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIP 340

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++   +  R  + Y+
Sbjct: 341 YEIFCNL-RRVPRIYS 355


>gi|253689861|ref|YP_003019051.1| alanine racemase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259710071|sp|C6DE79|ALR_PECCP RecName: Full=Alanine racemase
 gi|251756439|gb|ACT14515.1| alanine racemase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 360

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 179/366 (48%), Gaps = 24/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+ +++  A+VK NAYG G  + A    +A    + V  + E + 
Sbjct: 8   INRRALRHNLQRIRQLAPDSQVVAIVKANAYGHGMIEAAHTFCDADC--YGVARLSEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  ++ +  L   + S  QL   + L    +S P    ++
Sbjct: 66  LRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHSPEQL---AALEQATLSQPLRVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A  F    +  + + Q   I+SH + AD+P +     QL  F    
Sbjct: 123 LDTGMHRLGVLPEHADAFWQRLTACRNVVQPVNIMSHFSRADEPEAGTTERQLTCFDAFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI LYG +  D  + +H   Q  +T  + +I
Sbjct: 183 QGKPGAQ-SIAASGGILLWPQSHRDRVRPGIILYGVSPLDNEDAAHFGFQPAMTFTSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V YGG     R++ + V A+GY DGYP          +P+   G    I 
Sbjct: 242 AVREHHTGEAVGYGGTWTSPRNTRLGVVAVGYGDGYPRC--------APA---GTPVLIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP+ G+++MDM   D+      +VGD + ++GP + ++ +A  +G + Y+L+ R+  
Sbjct: 291 GREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGPTLPVERIAAHTGASAYELITRLTQ 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RTALEY 356


>gi|167036307|ref|YP_001671538.1| alanine racemase [Pseudomonas putida GB-1]
 gi|166862795|gb|ABZ01203.1| alanine racemase [Pseudomonas putida GB-1]
          Length = 357

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 187/366 (51%), Gaps = 35/366 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + +L  V+ S+ QL    K     +  P   
Sbjct: 63  ALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEKTQ---LHKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++D+G +R+GL  ++     H+++ + L  G++S I+  SH A AD+  +   + Q+ 
Sbjct: 120 WLKLDSGMHRVGLHPKD----YHDAYQRLLASGKVSRIVLMSHFARADELDADATAQQIA 175

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
            F    +  +G+  E SL +S G+L  P       RPG+ LYG T       ++  +Q V
Sbjct: 176 VFE---AARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVPQAEAARLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++R+I +R+  AGE V YG +    R + + V A+GYADGYP          +P+  
Sbjct: 233 MTLQSRVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYP--------RQAPN-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+++MDM   D+TD     VG  ++++G  +   +VA  +GT  Y
Sbjct: 283 -GTPVLVAGQRTQLIGRVSMDMLNIDLTDVPQATVGSPVELWGKQVLASEVAAQAGTIPY 341

Query: 356 DLLVRI 361
            +   +
Sbjct: 342 QIFCNL 347


>gi|312142736|ref|YP_003994182.1| alanine racemase [Halanaerobium sp. 'sapolanicus']
 gi|311903387|gb|ADQ13828.1| alanine racemase [Halanaerobium sp. 'sapolanicus']
          Length = 377

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 178/376 (47%), Gaps = 28/376 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL  LK N   +   L+ +    AVVK + YG G    A A   AG     V   EE
Sbjct: 14  VEIDLNNLKFNIKEIKKTLNSDTIFTAVVKADGYGHGAVPTAEAAIEAGADRLAVAIPEE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           G++LR     A I +L  + P Q   +   +LIP IS        + L +   +     L
Sbjct: 74  GIELREAGIAAPIEILGELLPEQLPELIRYDLIPTISKFKTAERLNNLCAGYNLKKKIHL 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            +DTG NR+G++ ++AL            ++  I++H A AD+       +Q ERF  LI
Sbjct: 134 NIDTGMNRVGVNYKKALPLLKKITELPNLEIEGIMTHFARADELEKEYTLIQWERFNQLI 193

Query: 187 SHYKG--IEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
              +   IE  +   A+S+ ++  P +   + R GI +YG   +  +  +  ++ V++ +
Sbjct: 194 EKLEAENIEIPIKHCANSAAVIDFPEFALDMVRAGIMIYGLKPSPDLKNNFNLKAVLSWK 253

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RI+ ++   AGE +SYG +    +   IA   +GYADGY             +  LG K
Sbjct: 254 SRIVRLKDVPAGEGISYGSEYITPKREKIATIPLGYADGY-------------ARILGNK 300

Query: 300 G--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               +KG   PI G+I MD  M D++    ++VGD + + G      +  D +A  +GT 
Sbjct: 301 ASVLVKGKRAPIRGRICMDQFMVDVSGIEGVKVGDEVVLIGSQNGLSLSADKLAEQAGTI 360

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++ RI  R A+ Y
Sbjct: 361 NYEIVSRISKRVARIY 376


>gi|218671884|ref|ZP_03521553.1| alanine racemase protein [Rhizobium etli GR56]
          Length = 160

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 216 GISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275
           GI+LYGG      ++PM+ V TAEARII +R   AGE VSYG   +L RDS +A+ + GY
Sbjct: 1   GIALYGGEAVCGMANPMRPVATAEARIIQVRTVGAGETVSYGRALQLPRDSRLAIVSAGY 60

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDY 333
           ADGY  + S        +V  GG+GFI G+ VP+ G+ITMD+T+FD+TD    ++  GDY
Sbjct: 61  ADGYMRSQSSGGVPLRQAVPQGGQGFIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDY 120

Query: 334 IQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++FG ++ LDDVA A+GT  Y++L  +G R+ + Y
Sbjct: 121 VELFGKNMPLDDVARAAGTIGYEILTSMGLRHERRY 156


>gi|325290796|ref|YP_004266977.1| alanine racemase [Syntrophobotulus glycolicus DSM 8271]
 gi|324966197|gb|ADY56976.1| alanine racemase [Syntrophobotulus glycolicus DSM 8271]
          Length = 376

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 182/381 (47%), Gaps = 25/381 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH        IDL AL+ N+  +     N+   A+VK NAYG G  +I   L   GV+ F
Sbjct: 1   MHGMRPAWACIDLGALRRNYRRI-CRQTNSEVMAIVKANAYGHGALEIVRTLKEEGVRRF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCG 119
            V  +EE +++R   P+  + ++    P Q + I    +IP +  + Q   +S +    G
Sbjct: 60  GVAILEEALQIREKFPEVTVMLIGPTMPDQAERIVAEGIIPEVFRLEQAEAFSLEAEKKG 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           +     ++VDTG  R+G   ++AL+           ++  I +HLA AD+        QL
Sbjct: 120 IPAILHIKVDTGMGRIGFQ-EDALENILKIAQLPGIEIEGIYTHLATADEIDLGFAFTQL 178

Query: 180 ERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPM 232
           +RF  L    K  G+   +   A+S+ IL   +  ++L RPG+ LYG    +     +  
Sbjct: 179 KRFDGLYESLKTAGLNIPMRHVANSAAILQLRDQEYELCRPGLMLYGQLPMNHWEGENGF 238

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + +++ +ARI+ ++K  AG+ VSYG        +L+A   +GYADG   +LS        
Sbjct: 239 EPLMSLKARIVHLKKIAAGDSVSYGRTFIAQAPTLVATLPLGYADGLRRSLSN------- 291

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348
                    +KG   P++G+I MD TM D+T    +E+GD + I G + K       +A 
Sbjct: 292 ----NWNVIVKGRYAPVIGRICMDQTMIDVTGIEGVEIGDEVTILGSEGKSSLTAAQMAE 347

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            +GT +Y++L  I  R  + Y
Sbjct: 348 CAGTISYEILCGISQRVPRVY 368


>gi|315125720|ref|YP_004067723.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           sp. SM9913]
 gi|315014234|gb|ADT67572.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           sp. SM9913]
          Length = 359

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 187/368 (50%), Gaps = 25/368 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L AL +N   +   + N++  AV+K NAYG G  KIA  L +A    F V  ++E +
Sbjct: 7   EINLQALAHNLAQVRQFAPNSKVMAVLKANAYGHGLVKIAQHLNDADA--FAVARIDEAL 64

Query: 70  KLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G  H     I+   N   +I    QL     L +  +  P +  L
Sbjct: 65  ALRAGGLTKPIVLLEGFFHQDDLPILLANNFQTIIHDENQL---RALENAKLDAPISCWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTL 185
           +++TG +RLG++  +  DF          + ++ +++H + ADD +    + Q+  F +L
Sbjct: 122 KINTGMHRLGVAPTQLNDFYQRLQATDNAKDTINLMTHFSSADDVNDPKTAEQIALFDSL 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARI 242
           +   K     LA+S+GI+  P  H +  RPG+ +YG +  +N   K H ++ V+    ++
Sbjct: 182 VQG-KQQAHCLANSAGIIAWPAGHGEWVRPGLMMYGVSPMLNTSGKDHQLKPVMRLTTKV 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I IR   A + V YGG  +  + + +AV A+GY DGYP       ++H   V + GK + 
Sbjct: 241 IAIRDVDAAQGVGYGGSWQSAQPTKLAVVAMGYGDGYP-----RHAKHGTPVVIAGKRY- 294

Query: 303 KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
                 I G I+MDM   DI ++   I+VGD + ++GP++ ++++A  + T +Y+LL  I
Sbjct: 295 -----GIAGNISMDMISVDIGENADGIKVGDEVVMWGPELPVEEIAQCADTISYELLCNI 349

Query: 362 GTRYAKFY 369
             R +  Y
Sbjct: 350 TPRVSYEY 357


>gi|294649985|ref|ZP_06727373.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824078|gb|EFF82893.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194]
          Length = 356

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 180/361 (49%), Gaps = 25/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID TAL+ N + +  L+ N++  ++VK NAYG G +    AL  A    F V  +EE ++
Sbjct: 8   IDSTALQYNLNRVKQLAPNSKIVSMVKANAYGHGIKDCLTAL--AATDAFGVACLEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQ 127
           +R       I ++ G+    E I + +  L  V+    Q+ +    K     +     ++
Sbjct: 66  IRRLGYLQPITLIEGVFSADEMIHVIEQKLECVVHHAQQVEWLLAHKDQYQALDLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTLI 186
           +++G NRLG  + E +        K  G   ++  H A AD  + H +N  Q  +F  + 
Sbjct: 126 LNSGMNRLGFKVSEIITVIQRL--KAEGFNCVLTMHFANAD--TDHPLNEQQKMQFLQVK 181

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
              + I AS  +S+ I   P  HF   RPGI LYG +   DK  ++  ++ V+T  A II
Sbjct: 182 QACEPILASCCNSAAIYRYPELHFDFVRPGIMLYGASPFADKNVEALDLKPVMTFSAEII 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            + +   GE V YG     T+D  IA+ +IGY DGYP         +    F+     I 
Sbjct: 242 ALNQIQQGEYVGYGSTYVATQDMTIAIVSIGYGDGYP-------RAYIKPNFVA----IH 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             ++P++G+++MDM   DI++ L+ E+G  ++++G    +DDVA A+GT  Y+LL R+  
Sbjct: 291 DQLIPVIGRVSMDMIAIDISN-LNAEIGTKVELWGNTRLVDDVAEANGTIGYELLCRLSQ 349

Query: 364 R 364
           R
Sbjct: 350 R 350


>gi|26247504|ref|NP_753544.1| alanine racemase [Escherichia coli CFT073]
 gi|227886397|ref|ZP_04004202.1| alanine racemase [Escherichia coli 83972]
 gi|300971950|ref|ZP_07171738.1| alanine racemase [Escherichia coli MS 45-1]
 gi|301046830|ref|ZP_07193947.1| alanine racemase [Escherichia coli MS 185-1]
 gi|306813916|ref|ZP_07448089.1| alanine racemase [Escherichia coli NC101]
 gi|27923729|sp|P59237|ALR2_ECOL6 RecName: Full=Alanine racemase, catabolic
 gi|26107905|gb|AAN80104.1|AE016759_378 Alanine racemase, catabolic [Escherichia coli CFT073]
 gi|227836601|gb|EEJ47067.1| alanine racemase [Escherichia coli 83972]
 gi|300301198|gb|EFJ57583.1| alanine racemase [Escherichia coli MS 185-1]
 gi|300411075|gb|EFJ94613.1| alanine racemase [Escherichia coli MS 45-1]
 gi|305852553|gb|EFM53001.1| alanine racemase [Escherichia coli NC101]
 gi|307553240|gb|ADN46015.1| alanine racemase [Escherichia coli ABU 83972]
 gi|315290759|gb|EFU50131.1| alanine racemase [Escherichia coli MS 153-1]
 gi|324006029|gb|EGB75248.1| alanine racemase [Escherichia coli MS 57-2]
          Length = 356

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISSAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SLA+S+  L     HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLANSAATLWHQEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G +   +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVLTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|123966942|ref|YP_001012023.1| alanine racemase [Prochlorococcus marinus str. MIT 9515]
 gi|123201308|gb|ABM72916.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9515]
          Length = 399

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 169/330 (51%), Gaps = 28/330 (8%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L  N    AVVK + YG   + ++      G     V +++EG+KLR  +    I VL  
Sbjct: 48  LKNNCEFMAVVKADGYGHDAKVVSENAIRGGASQLGVATLKEGIKLRSSSINVPILVLGN 107

Query: 86  IHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCG-VSHPYALQVDTGFNRLGLSLQEAL 143
           ++  ++ +I F  +L+P +SS+ +    +++     +     L++DTG +RLG    E +
Sbjct: 108 LYAKKDLLICFRNDLMPTVSSIRECLICNEIGKINNMKFSLHLKIDTGMSRLGFECDEFV 167

Query: 144 DFTHNSFNKKLGQLSLIISHLACADD-----PSSHVNSVQLERFRTL-----ISHYKGIE 193
              +N  + K   +  I SHLACAD+     P S    +Q E+F+ L     I + K I+
Sbjct: 168 QQFNNIKSLKNIDVKGIYSHLACADEKNALNPKSRT-QLQREKFQELLKLVSIDNTKNIK 226

Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEARIILIRKALAG 251
             LA+S+G++LG N+HF + R G+++YG    IN +    ++  +  +A++  +R    G
Sbjct: 227 IHLANSAGMILGKNFHFDMVRVGLAMYGYDPLINTTEKSLLKPALFLKAKVTFVRTIEKG 286

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE-HSPSVFLGGKGFIKGYMVPIL 310
             VSYG +    R + +AV +IGYADG   +LSG  S  H+  ++            P +
Sbjct: 287 VGVSYGNKFVSDRKTKLAVLSIGYADGIIRSLSGKISLIHNKKLY------------PQV 334

Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
           G ITMD  M DITDS  I+VG  + + G D
Sbjct: 335 GSITMDQMMVDITDSEDIKVGSTMLLLGSD 364


>gi|157373902|ref|YP_001472502.1| alanine racemase [Shewanella sediminis HAW-EB3]
 gi|254802383|sp|A8FRA1|ALR_SHESH RecName: Full=Alanine racemase
 gi|157316276|gb|ABV35374.1| Alanine racemase [Shewanella sediminis HAW-EB3]
          Length = 358

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 184/368 (50%), Gaps = 24/368 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I   AL+NN   +  ++  ++  AVVK N YG G   +A  L NA    F +   
Sbjct: 4   FPRAEISSKALQNNLARLREIAPGSKVMAVVKANGYGHGLLNVAHCLDNA--DGFGLARP 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    ++++ +L G     +   + + ++  V+ +  QL     L S  ++ P 
Sbjct: 62  EEALALREGGVKSKLILLEGFFSQVDLTTLVEHDIDTVVHNEVQLEL---LESSILAKPA 118

Query: 125 A--LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L++D+G +RLG + ++ A  +       ++ +   ++SH ACAD+P +    VQ+  
Sbjct: 119 TVWLKIDSGMHRLGFTPEQFAAVYARLEACPQVAKPINLMSHFACADEPDNPSTKVQINL 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTA 238
           F  LI    G + SLA+S+G L  P       RPGI+LYG +  I     +H +   +  
Sbjct: 179 FNDLIKDLPG-QRSLANSAGTLYWPESQADWIRPGIALYGVSPVIGDLGGNHGLMPAMEL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +++I +R   AGE V YG       D+ + V AIGY DGYP         ++P    G 
Sbjct: 238 VSQLIAVRDHKAGEPVGYGSSWYAKEDTKLGVVAIGYGDGYP--------RNAPE---GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+  + +  +GD   ++G  + +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPIVGRVSMDMLTVDLGINATDLIGDDAILWGKALPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|333007517|gb|EGK26995.1| alanine racemase [Shigella flexneri K-272]
 gi|333019899|gb|EGK39171.1| alanine racemase [Shigella flexneri K-227]
          Length = 356

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+  + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYGQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 GIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISGAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|148550379|ref|YP_001270481.1| alanine racemase [Pseudomonas putida F1]
 gi|148514437|gb|ABQ81297.1| alanine racemase [Pseudomonas putida F1]
          Length = 357

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 187/366 (51%), Gaps = 35/366 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR     A + +L G     E  +I + +L  V+ S+ QL    K     +  P   
Sbjct: 63  ALELRAAGINAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEK---TPLHKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++D+G +R+GL  ++     H+++ + L  G++S I+  SH A AD+  +   + Q+ 
Sbjct: 120 WLKLDSGMHRVGLHPKD----YHDAYQRLLASGKVSRIVLMSHFARADELDADATAQQIA 175

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
            F    +  +G+  E SL +S G+L  P       RPG+ LYG T       ++  +Q V
Sbjct: 176 VFE---AARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++R+I +R+  AGE V YG +   +R + + V A+GYADGYP          +P+  
Sbjct: 233 MTLQSRVISVRELPAGEPVGYGAKFVSSRPTRVGVVAMGYADGYP--------RQAPN-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+++MDM   D+TD     VG  ++++G  +   +VA  +GT  Y
Sbjct: 283 -GTPVLVAGKRTHLIGRVSMDMLSIDLTDVPQATVGSPVELWGKQVLASEVAAQAGTIPY 341

Query: 356 DLLVRI 361
            +   +
Sbjct: 342 QIFCNL 347


>gi|228907651|ref|ZP_04071508.1| Alanine racemase [Bacillus thuringiensis IBL 200]
 gi|228852143|gb|EEM96940.1| Alanine racemase [Bacillus thuringiensis IBL 200]
          Length = 340

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 164/349 (46%), Gaps = 24/349 (6%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           A VK N YG G  +++    N+GV    V S+EE +KLR    QA I +L    P     
Sbjct: 2   ATVKANGYGHGAVEVSKKAINSGVDYLAVASLEEAIKLRKSDIQAPILMLGYTPPSAANH 61

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
           +   +L   I  +      SK     G      ++VDTG  RLGL  +EA DF H     
Sbjct: 62  VVYWDLTQSIFDIEHAEALSKSGQILGKKAKVHVKVDTGMGRLGLQAEEANDFIHIVSRM 121

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL-----ASSSGILLGPN 207
               L  + SH A AD+        Q  R++ L+   +  + S+     A+S+  +  P+
Sbjct: 122 DGLYLEGVYSHFATADEADKRYAEKQKNRWKRLLEELEKRKVSIPLFHIANSAATIEMPD 181

Query: 208 YHFQLTRPGISLYG--GTDKINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
             + + R GIS+YG   + ++NK+   ++  +  + ++I I+    G  VSYG       
Sbjct: 182 MTYDMVRIGISMYGLYPSKEVNKTKVNLKQAIQLKTKVIYIQTLEKGYGVSYGATNIERD 241

Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324
            ++IA   IGYADGY   LSG       + ++     I G + PI GKI MD  M D+TD
Sbjct: 242 KAIIATIPIGYADGYSRRLSG-------TAYV----LIHGQLAPIFGKICMDFCMIDVTD 290

Query: 325 SLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              + +GD + ++G      I LD+VA   GT +Y++   +G R  + Y
Sbjct: 291 IKGVNIGDEVVVYGGQGDYFISLDEVASMLGTISYEVACNLGQRVPRIY 339


>gi|90407215|ref|ZP_01215402.1| alanine racemase [Psychromonas sp. CNPT3]
 gi|90311638|gb|EAS39736.1| alanine racemase [Psychromonas sp. CNPT3]
          Length = 357

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 184/371 (49%), Gaps = 28/371 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  I+L AL++N   +   + N++  A++K NAYG G  +IA  L +  +    V    E
Sbjct: 5   RAIINLKALQHNLKVLKKQAPNSKILAIIKANAYGHGMIEIAKNLTD--IHGLGVARFNE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            + LR    +  I +L G    +   ++   +L  VI S  Q+     L+S  +  P   
Sbjct: 63  ALVLRHAHIKTPIVLLEGFFAKENLPLLVQHDLQTVIHSEEQV---QDLISATLDKPLTI 119

Query: 126 -LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L++D G +RLG      ++      +S N KL  ++LI  H  CAD+  + +   Q++ 
Sbjct: 120 WLKLDVGMHRLGFHAHQFKKMYQLLKHSKNVKL-PINLI-CHFNCADELDNPITEKQIQL 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           F+  I    G+  SLASS+  L  P  H  + RPGI+LYG +   DK  +   +Q V+T 
Sbjct: 178 FKVQIQEDSGLN-SLASSAATLAWPTSHADMIRPGIALYGISPFADKEAEEFSLQPVMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++R+I +R+   GE V YG      +D+ + V A+GY DGYP     +  E +P      
Sbjct: 237 KSRLIAVREHKKGEAVGYGANWVAPQDTKLGVVAVGYGDGYP----RMAPEGTPI----- 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +VP++G+++MDM   D+    + +VGD + ++G  +    V+   GT  Y+L+
Sbjct: 288 --LVNGRIVPLVGRVSMDMLTVDLGLDCTDKVGDDVTLWGEGLSATRVSKHMGTVAYELI 345

Query: 359 VRIGTRYAKFY 369
            ++  R    Y
Sbjct: 346 TKLTARVELQY 356


>gi|145704|gb|AAC36881.1| catabolic alanine racemase [Escherichia coli]
          Length = 356

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 178/369 (48%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  A+   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P          R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISG-----R 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
              +    +G+E   SL++S+  L  P  HF   RPGI LYG    G  +   +  ++ V
Sbjct: 173 MARIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGRSPSGQWRDIANTGLRPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+    
Sbjct: 233 MTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHA---L 281

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 282 TGTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALAVR 350


>gi|225174429|ref|ZP_03728428.1| alanine racemase [Dethiobacter alkaliphilus AHT 1]
 gi|225170214|gb|EEG79009.1| alanine racemase [Dethiobacter alkaliphilus AHT 1]
          Length = 379

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 173/375 (46%), Gaps = 26/375 (6%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+ +N       +S   R  A+VK + YG G  ++A     AGV    V  VEE 
Sbjct: 12  EIDLGAIGHNIRQFKQHVSSQTRLMAIVKADGYGHGAVEVAREAVAAGVSFLGVGMVEEA 71

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L          +   NL P V +      F    +  G      ++
Sbjct: 72  LELRENGIDTPILILGFTPKAYAPYLCQYNLTPTVFTPEEADAFAEAALRAGNDLAVHVK 131

Query: 128 VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VDTG  R+G    ++A  F  +  +     L+ + +H A ADDP +     QLERF  LI
Sbjct: 132 VDTGMGRVGCFPCEDADGFISHVASLPGLSLTGLYTHFAAADDPDATYTRWQLERFLKLI 191

Query: 187 SHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
           +    +GI   +   A+S+G +  P  H  + R GIS+YG     +   +   ++  ++ 
Sbjct: 192 ARLEARGIHIPVKHAANSAGAISHPETHLDMVRLGISVYGLYPADEVCRREVKLRPAMSL 251

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A++I ++   AG  VSYG      R + IA   +GY DGYP  LS             G
Sbjct: 252 KAKVIFVKDVPAGTKVSYGCTYVTERAARIATLPLGYGDGYPRHLSNC-----------G 300

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +  I G   P++G++ MD+TM D+ D   +  GD + +FG      + +D+VA    T N
Sbjct: 301 QVLIHGRRAPVVGRVCMDLTMIDVQDIAEVSAGDEVVLFGRQGDAFLSVDEVARWIDTIN 360

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++ RI  R  + Y
Sbjct: 361 YEVVTRISRRIPRVY 375


>gi|119900214|ref|YP_935427.1| alanine racemase [Azoarcus sp. BH72]
 gi|166919546|sp|A1KCI5|ALR_AZOSB RecName: Full=Alanine racemase
 gi|119672627|emb|CAL96541.1| alanine racemase [Azoarcus sp. BH72]
          Length = 353

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 176/356 (49%), Gaps = 24/356 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+    +  G  R  AVVK NAYG G  + A AL  A    F V  ++E ++
Sbjct: 8   IDLDALRHNYRLARSRHGG-RALAVVKANAYGHGAVRCAQAL-AAEADGFAVAFLDEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           LR       I +L G+    E + +    L PV+    Q+    +     ++ P    L+
Sbjct: 66  LRAAGITQTIVLLEGVFDAAELEQVVAHGLWPVVHHAAQIEMIEQ---AALARPLDIWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           V++G NR G  + +A+           K+G+++L+ +H A AD+P     + QL  F T 
Sbjct: 123 VNSGMNRAGF-VGDAVGSAWQRLRASGKVGEITLM-THFARADEPQVIATAEQLADFDTA 180

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                G   SLA+S+ +L  P+ H    RPGI LYG      + + +Q V+T E+ +I +
Sbjct: 181 TRGLPGPR-SLANSAAVLGWPDAHADWARPGILLYGADPMPGEGNGLQPVMTLESGVIAV 239

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AG  + YG +    R   I + A+GYADGYP +      + +P V       + G 
Sbjct: 240 RDLAAGAPLGYGARYVAERPRRIGLVAMGYADGYPRSA----PDGTPVV-------VDGQ 288

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
              ++G+++MDM   D+TD     +G  ++++G  + ++ VA  +GT  Y+LL  +
Sbjct: 289 PSMLVGRVSMDMLTVDLTDLPQAGIGSRVELWGRQVPINQVAAGAGTIAYELLCNV 344


>gi|160873869|ref|YP_001553185.1| alanine racemase [Shewanella baltica OS195]
 gi|304411180|ref|ZP_07392795.1| alanine racemase [Shewanella baltica OS183]
 gi|307306475|ref|ZP_07586218.1| alanine racemase [Shewanella baltica BA175]
 gi|254802377|sp|A9L126|ALR_SHEB9 RecName: Full=Alanine racemase
 gi|160859391|gb|ABX47925.1| alanine racemase [Shewanella baltica OS195]
 gi|304350373|gb|EFM14776.1| alanine racemase [Shewanella baltica OS183]
 gi|306910766|gb|EFN41194.1| alanine racemase [Shewanella baltica BA175]
 gi|315266096|gb|ADT92949.1| alanine racemase [Shewanella baltica OS678]
          Length = 358

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 182/378 (48%), Gaps = 40/378 (10%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N F R +I  +AL+ N  ++   +  +R  AVVK N YG G   +A  L +A    F + 
Sbjct: 2   NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVANCLVSA--DGFGLA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++E ++LR     AR+ +L G     +  ++   ++  V+    QL    + +   +S 
Sbjct: 60  RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTV---LSK 116

Query: 123 PYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---------IISHLACADDPS 171
           P    L+VD+G +RLG        FT   F+    +L           +++H ACAD+P 
Sbjct: 117 PVTVWLKVDSGMHRLG--------FTPEQFSTVYDRLMACSNVAKPIHLMTHFACADEPD 168

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINK 228
           +   SVQ+  F TL +   G   +LA+S+G L  P       RPGI+LYG    T     
Sbjct: 169 NTYTSVQMAAFNTLTAGLPGFR-TLANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGA 227

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +H +   +   +++I +R   A + V YG      +D+ + V AIGY DGYP        
Sbjct: 228 NHGLVPAMELVSQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYP-------- 279

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
            ++P    G   ++ G  VPI+G+++MDM   D+      +VGD   ++G  + +++VA 
Sbjct: 280 RNAPE---GTPVWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAE 336

Query: 349 ASGTTNYDLLVRIGTRYA 366
             GT  Y+L+ ++  R A
Sbjct: 337 HIGTIAYELVTKLTPRVA 354


>gi|22124492|ref|NP_667915.1| alanine racemase [Yersinia pestis KIM 10]
 gi|45440330|ref|NP_991869.1| alanine racemase [Yersinia pestis biovar Microtus str. 91001]
 gi|108809954|ref|YP_653870.1| alanine racemase [Yersinia pestis Antiqua]
 gi|108813509|ref|YP_649276.1| alanine racemase [Yersinia pestis Nepal516]
 gi|145600898|ref|YP_001164974.1| alanine racemase [Yersinia pestis Pestoides F]
 gi|150260633|ref|ZP_01917361.1| alanine racemase (biosynthetic) [Yersinia pestis CA88-4125]
 gi|162420301|ref|YP_001605330.1| alanine racemase [Yersinia pestis Angola]
 gi|165926799|ref|ZP_02222631.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936464|ref|ZP_02225032.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010502|ref|ZP_02231400.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213905|ref|ZP_02239940.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402467|ref|ZP_02307924.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419354|ref|ZP_02311107.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426158|ref|ZP_02317911.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167470981|ref|ZP_02335685.1| alanine racemase [Yersinia pestis FV-1]
 gi|218927526|ref|YP_002345401.1| alanine racemase [Yersinia pestis CO92]
 gi|229836578|ref|ZP_04456744.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           Pestoides A]
 gi|229840186|ref|ZP_04460345.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842268|ref|ZP_04462423.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229903994|ref|ZP_04519107.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           Nepal516]
 gi|270489020|ref|ZP_06206094.1| alanine racemase [Yersinia pestis KIM D27]
 gi|294502386|ref|YP_003566448.1| alanine racemase [Yersinia pestis Z176003]
 gi|20137380|sp|Q8ZJ10|ALR1_YERPE RecName: Full=Alanine racemase 1
 gi|226711068|sp|A9QYT2|ALR_YERPG RecName: Full=Alanine racemase
 gi|21957285|gb|AAM84166.1|AE013660_1 alanine racemase 1 [Yersinia pestis KIM 10]
 gi|45435186|gb|AAS60746.1| alanine racemase (biosynthetic) [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108777157|gb|ABG19676.1| alanine racemase (biosynthetic) [Yersinia pestis Nepal516]
 gi|108781867|gb|ABG15925.1| alanine racemase (biosynthetic) [Yersinia pestis Antiqua]
 gi|115346137|emb|CAL19005.1| alanine racemase (biosynthetic) [Yersinia pestis CO92]
 gi|145212594|gb|ABP42001.1| alanine racemase (biosynthetic) [Yersinia pestis Pestoides F]
 gi|149290041|gb|EDM40118.1| alanine racemase (biosynthetic) [Yersinia pestis CA88-4125]
 gi|162353116|gb|ABX87064.1| alanine racemase [Yersinia pestis Angola]
 gi|165915580|gb|EDR34189.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921422|gb|EDR38646.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990592|gb|EDR42893.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204880|gb|EDR49360.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963348|gb|EDR59369.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048155|gb|EDR59563.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054869|gb|EDR64671.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229679764|gb|EEO75867.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           Nepal516]
 gi|229690578|gb|EEO82632.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696552|gb|EEO86599.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706262|gb|EEO92270.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           Pestoides A]
 gi|262360469|gb|ACY57190.1| alanine racemase [Yersinia pestis D106004]
 gi|262364415|gb|ACY60972.1| alanine racemase [Yersinia pestis D182038]
 gi|270337524|gb|EFA48301.1| alanine racemase [Yersinia pestis KIM D27]
 gi|294352845|gb|ADE63186.1| alanine racemase [Yersinia pestis Z176003]
 gi|320013815|gb|ADV97386.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 359

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 179/371 (48%), Gaps = 34/371 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  L+  +R  AVVK NAYG G    A  L +A    + V  + E + 
Sbjct: 8   IDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQDADC--YGVARISEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI------SSVPQLTFYSKLMSCGVSHP- 123
           LR       I +L G         FD   +PV+      ++V  L     L +  +S P 
Sbjct: 66  LRAGGIVKPILLLEGF--------FDAEDLPVLVANHIETAVHSLEQLVALEAATLSAPI 117

Query: 124 -YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+   +A  F    S  + + Q   I+SH + AD+P       QL  
Sbjct: 118 NVWMKLDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLAC 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
           F    +   G + S+A+S GIL  P  H    RPGI LYG +       +   +   +T 
Sbjct: 178 FDAFAAGKPG-KQSIAASGGILRWPQAHRDWVRPGIVLYGVSPFDAPYGRDFGLLPAMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G 
Sbjct: 237 KSSLIAVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRS--------APS---GT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  V I+G+++MDM   D+    + +VGD   ++G ++ ++ VA  +G + Y+L+
Sbjct: 286 PVWLNGREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELI 345

Query: 359 VRIGTRYAKFY 369
             + +R A  Y
Sbjct: 346 TNLTSRVAMEY 356


>gi|67922161|ref|ZP_00515676.1| Alanine racemase [Crocosphaera watsonii WH 8501]
 gi|67856061|gb|EAM51305.1| Alanine racemase [Crocosphaera watsonii WH 8501]
          Length = 405

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 185/388 (47%), Gaps = 35/388 (9%)

Query: 2   HSNEFLR----LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           H +E +R    ++IDL+AL +N   +  L S      AVVK +AYG G   +A  +  AG
Sbjct: 19  HLSEVIRQRAWVEIDLSALSHNVVQIKQLLSPKTALMAVVKADAYGHGAIAVAQTVLEAG 78

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKL 115
                V ++ EG++LR     A I +L  I+ P +   I   N+ P +    Q   +S+ 
Sbjct: 79  ANALAVATLGEGIELREAGITAPILILGAINTPEEIAAIAHWNIEPTLCDPQQAIIFSQT 138

Query: 116 MSCGVSHPYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPS 171
           +S     P +  L++DTG +RLG+   +  +F   S  KKL  L L  + SHLA ADDP 
Sbjct: 139 LSQW-EKPLSVHLKLDTGMSRLGMPWHQGTEFA--SLVKKLPYLKLNSVYSHLATADDPD 195

Query: 172 SHVNSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTD 224
                +Q +RF+T IS  K  G++      A+S+  L+ P  H+ L R G+ LYG     
Sbjct: 196 RTNMYLQHKRFKTAISQLKAQGVKPPRLHFANSAATLIAPQLHYDLVRVGLGLYGLYPAP 255

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            +     ++ V+  +A+I  I+   A   VSYG Q    R   IAV  IGYADG P  LS
Sbjct: 256 HLRSIVSLKPVLQVKAKITQIKTIPANTGVSYGYQFVSDRPMKIAVVGIGYADGVPRQLS 315

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                         +  IKG     +G ITMD  M D++    ++VGD + + G D    
Sbjct: 316 N-----------RLQVLIKGQRACQIGAITMDQLMLDVSHLRHLKVGDTVTLIGQDGNQE 364

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKF 368
           I  +  A   GT ++++L     R  + 
Sbjct: 365 ITANHWATMLGTISWEILCGFKHRLPRI 392


>gi|260598252|ref|YP_003210823.1| alanine racemase [Cronobacter turicensis z3032]
 gi|260217429|emb|CBA31526.1| Alanine racemase, catabolic [Cronobacter turicensis z3032]
          Length = 356

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 186/374 (49%), Gaps = 44/374 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL AL++N   +   +  +R  +VVK NAYG G +++  AL   G  D F + ++
Sbjct: 5   IQASLDLQALRHNLEVVRRAAPRSRVWSVVKANAYGHGLDRVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G     E  +FD   L   + S  QL     L    ++ P 
Sbjct: 62  EEAILLRERGWKGPILMLEGFFHADELPLFDKYRLTTSVHSNWQL---KALAGAKLNAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSS-HVNS 176
              L++++G NRLG + +      H+ + +      +GQ++L+ +H A AD P       
Sbjct: 119 DVYLKINSGMNRLGFTPER----VHSIWQQLKAIANVGQITLM-AHFADADRPDGIDAAM 173

Query: 177 VQLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSH 230
           V++E+        +GI+A  SL++S+  L  P  HF   RPGI LYG    G  +   + 
Sbjct: 174 VRIEQA------AEGIDAPRSLSNSAAALWHPQAHFDWVRPGIVLYGASPSGQWRDIATS 227

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q V+T ++ II ++    G+ V YG + +   +  I + A GYADGYP         H
Sbjct: 228 GLQPVMTLKSEIIGVQTLKPGDTVGYGSRYRAMGEQRIGIVACGYADGYP--------RH 279

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
           +P    G    + G    I+G ++MDM   D+T      +G  ++++G +IK+DDVA A 
Sbjct: 280 APD---GAPVLVDGVRTGIIGTVSMDMLTVDLTPCPQAGIGSPVELWGNEIKIDDVAAAC 336

Query: 351 GTTNYDLLVRIGTR 364
           GT  Y+L+  +  R
Sbjct: 337 GTVGYELMCALAPR 350


>gi|218437857|ref|YP_002376186.1| alanine racemase [Cyanothece sp. PCC 7424]
 gi|218170585|gb|ACK69318.1| alanine racemase [Cyanothece sp. PCC 7424]
          Length = 403

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 176/364 (48%), Gaps = 25/364 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A+ +N H++   LS +    AVVK +AYG G  K+A     AG     + ++ E
Sbjct: 30  IEIDHHAIAHNVHAIKQILSPSTELMAVVKADAYGHGALKVAQTALQAGASWLAIATLGE 89

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR     A I +L  I+ P +   I    L P + +  Q   +S+ +S  G + P  
Sbjct: 90  GIELREAGIAAPILILGAINTPEEIATIAHWKLQPTLCNPQQALIFSETLSKIGQTLPVH 149

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++DTG +RLG    EA DF          ++  + SHLA ADDP   +  +Q +RF   
Sbjct: 150 LKIDTGMSRLGTIWHEAADFVQLVHQLPNLKMKSVYSHLATADDPDPTIMRLQHQRFEKA 209

Query: 186 ISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           IS  K  GI       A+S+  L   + H+ L R G+ LYG      +  +  ++ V+  
Sbjct: 210 ISEIKAQGITPPRLHFANSAATLSDRSVHYDLVRVGLGLYGLYPAPHLRSTVDLKPVLQV 269

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +ARI  ++    G  VSYG Q    R+  IAV  IGYADG    LS              
Sbjct: 270 KARITQVKTIPPGTGVSYGYQFISDRELRIAVVGIGYADGVSRNLSN-----------RL 318

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +  I+G  V  +G ITMD  M D+++   ++ G+ + + G D    I  D+ A   GT +
Sbjct: 319 EVLIRGKRVRQIGAITMDQLMLDVSNIPHLQAGEVVTLIGKDQDEEITADEWATQLGTIS 378

Query: 355 YDLL 358
           +++L
Sbjct: 379 WEIL 382


>gi|71736924|ref|YP_272530.1| alanine racemase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|123638783|sp|Q48PY9|ALR_PSE14 RecName: Full=Alanine racemase
 gi|71557477|gb|AAZ36688.1| alanine racemase [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 357

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 187/376 (49%), Gaps = 38/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+       G  +  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLAREHRGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + N   V+ S  QL     +    ++ P   
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELALIVEHNFWTVVHSTWQL---EAIEQAQLAKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++DTG +R+GL   E       ++ + L  G+++ I+  SH A AD+ +S  +    E
Sbjct: 120 WLKIDTGMHRVGLYPHE----YQAAYQRLLVTGKVARIVLMSHFARADELNSGCSD---E 172

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QT 234
           +F    S  KG+  E SL +S  +L  P+     +RPGI LYG T    ++HP+    Q 
Sbjct: 173 QFAVFESFRKGLAAEISLKNSPAVLGWPHIPSDWSRPGIMLYGAT-PFGQAHPLADRLQP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T E++II +R+  AGE V YG      R   I V A+GYADGYP         H+P+ 
Sbjct: 232 VMTLESKIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYP--------RHAPT- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  
Sbjct: 283 --GTPVQIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIP 340

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++   +  R  + Y+
Sbjct: 341 YEIFCNL-RRVPRIYS 355


>gi|51594730|ref|YP_068921.1| alanine racemase [Yersinia pseudotuberculosis IP 32953]
 gi|186893733|ref|YP_001870845.1| alanine racemase [Yersinia pseudotuberculosis PB1/+]
 gi|51588012|emb|CAH19616.1| alanine racemase (biosynthetic) [Yersinia pseudotuberculosis IP
           32953]
 gi|186696759|gb|ACC87388.1| alanine racemase [Yersinia pseudotuberculosis PB1/+]
          Length = 359

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 179/371 (48%), Gaps = 34/371 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  L+  +R  AVVK NAYG G    A  L +A    + V  + E + 
Sbjct: 8   IDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQDADC--YGVARISEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI------SSVPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +PV+      ++V  L     L +  +S P 
Sbjct: 66  LRAGGIVKPILLLEGF--------FDAEDLPVLVANHIETAVHSLEQLVALEAATLSAPI 117

Query: 125 --ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+   +A  F    S  + + Q   I+SH + AD+P       QL  
Sbjct: 118 NAWMKLDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLAC 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
           F    +   G + S+A+S GIL  P  H    RPGI LYG +       +   +   +T 
Sbjct: 178 FDAFAAGKPG-KQSIAASGGILRWPQAHRDWVRPGIVLYGVSPFDTPYGRDFGLLPAMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G 
Sbjct: 237 KSSLIAVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRS--------APS---GT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  V I+G+++MDM   D+    + +VGD   ++G ++ ++ VA  +G + Y+L+
Sbjct: 286 PVWLNGREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELI 345

Query: 359 VRIGTRYAKFY 369
             + +R A  Y
Sbjct: 346 TNLTSRVAMEY 356


>gi|251788347|ref|YP_003003068.1| alanine racemase [Dickeya zeae Ech1591]
 gi|247536968|gb|ACT05589.1| alanine racemase [Dickeya zeae Ech1591]
          Length = 358

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 176/361 (48%), Gaps = 24/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  A+VK NAYG G  + A A  +A    + V+ + E + 
Sbjct: 8   IDRQALRHNLQHIRQMAPQSRLIAIVKANAYGHGAVEAARAFSDA--DGYGVSRLSEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     E  ++ +  L   +    QL   + L    + HP    ++
Sbjct: 66  LRTAGITKPILLLEGFFAADELPLLAEHQLETAVHCEEQL---AALEQAHLPHPLTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  Q+A  F    S    + Q   I+SH   AD+P +     QL+ F    
Sbjct: 123 LDTGMHRLGVLPQQAEAFYARLSRCSNVVQPVNIMSHFCRADEPQTDTTQRQLDCFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI  YG +   +       ++  +T  +R+I
Sbjct: 183 QGKPGRQ-SIAASGGILLWPQAHRDQIRPGIIQYGVSPLAEGDASQWQLKPAMTLTSRLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG      RD+ + V AIGY DGYP      D++    V++ G+    
Sbjct: 242 AVREHPAGEPVGYGSLWSSPRDTRLGVIAIGYGDGYP-----RDAKSGTPVWINGR---- 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              VP+ G+++MDM   D+      +VGD + ++G  + ++ +A  +G + Y+L+ R+  
Sbjct: 293 --EVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGGPLPVEKIAAHNGISAYELITRLTA 350

Query: 364 R 364
           R
Sbjct: 351 R 351


>gi|170026067|ref|YP_001722572.1| alanine racemase [Yersinia pseudotuberculosis YPIII]
 gi|169752601|gb|ACA70119.1| alanine racemase [Yersinia pseudotuberculosis YPIII]
          Length = 359

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 179/371 (48%), Gaps = 34/371 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  L+  +R  AVVK NAYG G    A  L +A    + V  + E + 
Sbjct: 8   IDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQDADC--YGVARISEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI------SSVPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +PV+      ++V  L     L +  +S P 
Sbjct: 66  LRAGGIVKPILLLEGF--------FDAEDLPVLVANHIETAVHSLEQLVALEAATLSAPI 117

Query: 125 --ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+   +A  F    S  + + Q   I+SH + AD+P       QL  
Sbjct: 118 NAWMKLDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLAC 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
           F    +   G + S+A+S GIL  P  H    RPGI LYG +       +   +   +T 
Sbjct: 178 FDAFAAGKPG-KQSIAASGGILRWPQAHRDWVRPGIVLYGVSPFDAPYGRDFGLLPAMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G 
Sbjct: 237 KSSLIAVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRS--------APS---GT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  V I+G+++MDM   D+    + +VGD   ++G ++ ++ VA  +G + Y+L+
Sbjct: 286 PVWLNGREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELI 345

Query: 359 VRIGTRYAKFY 369
             + +R A  Y
Sbjct: 346 TNLTSRVAMEY 356


>gi|153948196|ref|YP_001402718.1| alanine racemase [Yersinia pseudotuberculosis IP 31758]
 gi|152959691|gb|ABS47152.1| alanine racemase [Yersinia pseudotuberculosis IP 31758]
          Length = 359

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 179/371 (48%), Gaps = 34/371 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  L+  +R  AVVK NAYG G    A  L +A    + V  + E + 
Sbjct: 8   IDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQDADC--YGVARISEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI------SSVPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +PV+      ++V  L     L +  +S P 
Sbjct: 66  LRAGGIVKPILLLEGF--------FDAEDLPVLVANHIETAVHSLEQLVALEAARLSAPI 117

Query: 125 --ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+   +A  F    S  + + Q   I+SH + AD+P       QL  
Sbjct: 118 NAWMKLDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLAC 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
           F    +   G + S+A+S GIL  P  H    RPGI LYG +       +   +   +T 
Sbjct: 178 FDAFAAGKPG-KQSIAASGGILRWPQAHRDWVRPGIVLYGVSPFDAPYGRDFGLLPAMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I +R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G 
Sbjct: 237 KSSLIAVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRS--------APS---GT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  V I+G+++MDM   D+    + +VGD   ++G ++ ++ VA  +G + Y+L+
Sbjct: 286 PVWLNGREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELI 345

Query: 359 VRIGTRYAKFY 369
             + +R A  Y
Sbjct: 346 TNLTSRVAMEY 356


>gi|331646502|ref|ZP_08347605.1| alanine racemase [Escherichia coli M605]
 gi|281178345|dbj|BAI54675.1| alanine racemase [Escherichia coli SE15]
 gi|330911052|gb|EGH39562.1| alanine racemase, catabolic [Escherichia coli AA86]
 gi|331045254|gb|EGI17381.1| alanine racemase [Escherichia coli M605]
          Length = 356

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     S  + R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDG--ISSAMAR 175

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G+E   SL++S+  L     HF   RPGI LYG +      D  N    ++
Sbjct: 176 IE---QAAEGLECRRSLSNSAATLWHQEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|152999256|ref|YP_001364937.1| alanine racemase [Shewanella baltica OS185]
 gi|254802376|sp|A6WJ85|ALR_SHEB8 RecName: Full=Alanine racemase
 gi|151363874|gb|ABS06874.1| alanine racemase [Shewanella baltica OS185]
          Length = 358

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 182/378 (48%), Gaps = 40/378 (10%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N F R +I  +AL+ N  ++   +  +R  AVVK N YG G   +A  L +A    F + 
Sbjct: 2   NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVANCLVSA--DGFGLA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++E ++LR     AR+ +L G     +  ++   ++  V+    QL    + +   +S 
Sbjct: 60  RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTV---LSK 116

Query: 123 PYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---------IISHLACADDPS 171
           P    L+VD+G +RLG        FT   F+    +L           +++H ACAD+P 
Sbjct: 117 PVTVWLKVDSGMHRLG--------FTPEQFSTVYARLMACPNVAKPIHLMTHFACADEPD 168

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINK 228
           +   SVQ+  F +L +   G   +LA+S+G L  P       RPGI+LYG    T     
Sbjct: 169 NSYTSVQMAAFNSLTAGLPGFR-TLANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGA 227

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +H +   +   +++I +R   A + V YG      +D+ + V AIGY DGYP        
Sbjct: 228 NHGLVPAMELVSQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYP-------- 279

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
            ++P    G   ++ G  VPI+G+++MDM   D+      +VGD   ++G  + +++VA 
Sbjct: 280 RNAPE---GTPVWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAE 336

Query: 349 ASGTTNYDLLVRIGTRYA 366
             GT  Y+L+ ++  R A
Sbjct: 337 HIGTIAYELVTKLTPRVA 354


>gi|70733320|ref|YP_263094.1| alanine racemase [Pseudomonas fluorescens Pf-5]
 gi|123652058|sp|Q4K3T9|ALR_PSEF5 RecName: Full=Alanine racemase
 gi|68347619|gb|AAY95225.1| alanine racemase [Pseudomonas fluorescens Pf-5]
          Length = 357

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 181/361 (50%), Gaps = 25/361 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  R  AV+K +AYG G  + A AL       F V  +EE
Sbjct: 5   RALIDLQALRHNYQLARETSG-VRALAVIKADAYGHGAVRCAQAL-EGEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + +   V+ S+ QL     +    V+ P   
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEASELALIVEHDFWCVVHSLWQL---EAIEQAAVAKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L++D+G +R+GL  ++  + +     + K+ ++ +++SH A AD+     +S Q+  F 
Sbjct: 120 WLKLDSGMHRVGLHPKDYQVAYQRLQASGKVEKI-VLMSHFARADELDCPRSSEQVAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEA 240
                  G E SL +S  ++  P+      RPGI LYG T   +  + +  +Q V+T E+
Sbjct: 179 A-ARQGLGAEISLRNSPAVMGWPSVPSDWVRPGIMLYGSTPFEENNSVAARLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG +    R   I V A+GYADGYP         H+P+   G   
Sbjct: 238 KVICVRELPAGEPVGYGARFITDRPMRIGVVAMGYADGYP--------RHAPT---GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    +LG+++MDM   D+TD     +G  ++++G +I   DVA A+ T  Y L   
Sbjct: 287 LVAGQRSRLLGRVSMDMLCVDLTDVPQAGLGSTVELWGKNILASDVAQAADTIPYQLFCN 346

Query: 361 I 361
           +
Sbjct: 347 L 347


>gi|168787693|ref|ZP_02812700.1| alanine racemase [Escherichia coli O157:H7 str. EC869]
 gi|261224927|ref|ZP_05939208.1| alanine racemase 2, PLP-binding protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261257216|ref|ZP_05949749.1| alanine racemase 2, PLP-binding protein [Escherichia coli O157:H7
           str. FRIK966]
 gi|189372430|gb|EDU90846.1| alanine racemase [Escherichia coli O157:H7 str. EC869]
          Length = 356

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 180/371 (48%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I   L   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSVL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  ++D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|327403145|ref|YP_004343983.1| Alanine racemase [Fluviicola taffensis DSM 16823]
 gi|327318653|gb|AEA43145.1| Alanine racemase [Fluviicola taffensis DSM 16823]
          Length = 762

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 189/378 (50%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+L+A+K+N     + +    +  A+VK ++YG G +K+AP L  +G+++F V   +E
Sbjct: 400 VEINLSAIKHNVSFYQSRIPKEVKILAMVKASSYGSGADKVAPFLQQSGIRNFGVAFADE 459

Query: 68  GVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVS 121
           GV+LR    +A I      V+    P    +I +  L P I S  QL  F + L+   +S
Sbjct: 460 GVELR----KAGIGISSSIVVMNPDPEHSDLIIEYRLEPAIYSFEQLDEFITALIHKQIS 515

Query: 122 -HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQL 179
            +P  L+ DTG +RLG +  +         ++   ++  I SHLA AD+P  S     QL
Sbjct: 516 AYPIHLKFDTGMHRLGFAPSDKERILAIINSQPEVKIQGIYSHLADADNPIHSEFTQKQL 575

Query: 180 ERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
             F +++S+++        A + +S G L  P   + + R GIS+YG T+       +Q 
Sbjct: 576 TSFESIVSYFRTNSSDSFLAHILNSEGSLRYPESCYDMIRLGISMYGYTENNQLKASLQG 635

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            V+  + I  I+    G+ + YG   +   D  IA+  +GYADG+  +LS          
Sbjct: 636 SVSWYSSISQIKAVPKGDFIGYGISYQAIEDMTIAIIPVGYADGFRRSLS---------- 685

Query: 295 FLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
              GKG  FI G   P++G++ MDM M DI+ S+  ++ D ++I G +  ++  A +  T
Sbjct: 686 --NGKGSVFIHGIKCPVVGRVCMDMIMVDIS-SVDAKINDSVEIIGQNQPMEVFAKSMET 742

Query: 353 TNYDLLVRIGTRYAKFYT 370
             Y+++  +  R  + Y 
Sbjct: 743 IPYEVMTGLSKRMHRVYV 760


>gi|3661473|gb|AAC61705.1| alanine racemase [Escherichia coli]
          Length = 356

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 178/369 (48%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  A+   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P          R
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISG-----R 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
              +    +G+E   SL++S+  L  P  HF   RPGI LYG    G  +   +  ++ V
Sbjct: 173 MARIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGRSPSGQWRDIANTGLRPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+    
Sbjct: 233 MTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHA---L 281

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y
Sbjct: 282 TGTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALALR 350


>gi|170768101|ref|ZP_02902554.1| alanine racemase [Escherichia albertii TW07627]
 gi|170122867|gb|EDS91798.1| alanine racemase [Escherichia albertii TW07627]
          Length = 356

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 185/370 (50%), Gaps = 36/370 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + ++R  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLRALKQNLTIVRQAAPHSRVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D   L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQYRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSV-QLE 180
              L+V++G NRLG+S +  L           +G+++L+ SH A A+ P    +++ +++
Sbjct: 119 DIYLKVNSGMNRLGVSPERVLTVWQQLRAMTNVGEMTLM-SHFAGAEHPDGITDAMARID 177

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQT 234
           +    ++  +    SL++S+  L  P  HF   RPGI LYG +      D  N    ++ 
Sbjct: 178 QAAEGLACRR----SLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LRP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  + II I+    G+ V YGG+     +  I + A GYADGYP         H+P+ 
Sbjct: 232 VMTLSSEIIGIQTLKVGDQVGYGGRYTAPDEQRIGIVAAGYADGYP--------RHAPT- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  
Sbjct: 283 --GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVG 340

Query: 355 YDLLVRIGTR 364
           Y+L+  +  R
Sbjct: 341 YELMCALALR 350


>gi|189347602|ref|YP_001944131.1| alanine racemase [Chlorobium limicola DSM 245]
 gi|189341749|gb|ACD91152.1| alanine racemase [Chlorobium limicola DSM 245]
          Length = 374

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 164/373 (43%), Gaps = 25/373 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I L+ L+ N   +   +G   R   +VK NAYG G  ++A  L + GV DF V +++E 
Sbjct: 13  RIKLSHLEENIRHIRQWTGKKLRIMGIVKANAYGHGVHRVAETLESVGVSDFGVANIQEA 72

Query: 69  VKLR----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           V LR    L  P A +     + P  +  +     + V S         K  + G     
Sbjct: 73  VALRTGGALKKPAAILAFSSPLEPQIDGYLQHDIEMTVCSFDILRAAGEKAAAYGKKLAV 132

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++VDTG  RLGL   E ++   N       +L  I +H A    P  +    QLE FR 
Sbjct: 133 QVKVDTGMGRLGLQPAETMELLRNINRSPDIELKGIYTHFAEGSKPGGYTGR-QLEEFRN 191

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT--VVT 237
           L++ Y+      I    ASS  IL   +  F + RPGI LYG         P+    V+ 
Sbjct: 192 LVTQYESESGTTICKHAASSGAILCRKDAWFDMVRPGILLYGYLPDPCMPAPIAVTPVMQ 251

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            EAR+I I+    G  VSY    +      IA  A GYADGYP  LS             
Sbjct: 252 MEARVIFIKTVAPGTSVSYNRTWRAAESRSIATVAAGYADGYPRALSN-----------K 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYD 356
           G+  I G   P +G +TMD  M D+     ++ GD   +FG +    DD+A + G+ +Y+
Sbjct: 301 GRVVINGKSCPQVGTVTMDQIMIDLGKEHDVKTGDKAILFGWEGPTADDIAGSIGSISYE 360

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + +
Sbjct: 361 VLCSVSNRVVRIF 373


>gi|227112420|ref|ZP_03826076.1| alanine racemase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 360

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 177/364 (48%), Gaps = 20/364 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  A+VK NAYG G    A    +A    + V  + E + 
Sbjct: 8   INRRALRHNLQRIRQLAPGSQVVAIVKANAYGHGMIDAAHTFSDADC--YGVARLSEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G     +  ++ +  L   + S  QL    ++ +     P  +++D
Sbjct: 66  LRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHSPEQLAALEQV-TLPQPIPVWMKLD 124

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLG+  + A  F    +  + + Q   I+SH   AD+P +     QL  F      
Sbjct: 125 SGMHRLGVLPEHADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQLACFDAFTQG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARIILI 245
             G + S+A+S GILL P  H    RPGI LYG +  D  + +H   Q  +T  + +I +
Sbjct: 185 KPGAQ-SIAASGGILLWPQSHRDRVRPGIILYGVSPLDNEDAAHFGFQPAMTFTSHLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AGE V YGG     R++ + V A+GY DGYP          +P+   G    I G 
Sbjct: 244 REHNAGEAVGYGGTWTSPRNTRLGVVAVGYGDGYPRC--------APA---GTPVLINGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VP+ G+++MDM   D+  +   +VGD + ++GP + ++ +A  +G + Y+L+ R+  R 
Sbjct: 293 EVPLSGRVSMDMITVDLGPNAQDKVGDEVILWGPTLPVERIAAHTGASAYELITRLTQRT 352

Query: 366 AKFY 369
           A  Y
Sbjct: 353 ALEY 356


>gi|312963835|ref|ZP_07778306.1| alanine racemase [Pseudomonas fluorescens WH6]
 gi|311281870|gb|EFQ60480.1| alanine racemase [Pseudomonas fluorescens WH6]
          Length = 357

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 191/373 (51%), Gaps = 34/373 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     ++G A+  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARDVTG-AKALAVIKADAYGHGAVRVAQAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + +   V+ S+ QL     +    +S P   
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELALIIEHDFWCVVHSLWQL---EAIEQAALSKPLTI 119

Query: 126 -LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L++D+G +R+GL     QEA  +     + K+ ++ +++SH A AD+     ++ Q+  
Sbjct: 120 WLKLDSGMHRVGLHPKDYQEA--YQRLLASGKVAKI-VLMSHFARADELDCTSSNEQVAV 176

Query: 182 FRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVV 236
           F    +  +G+  E SL +S  +L  P+      RPGI LYG T   +    +  +Q V+
Sbjct: 177 FD---AARQGLAAEVSLRNSPAVLGWPSVSSDWVRPGIMLYGATPFGEDQALAARLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+++I +R+  AGE V YG +    +   I V A+GYADGYP         H+P+   
Sbjct: 234 TLESKVICVRELPAGEPVGYGARFVTPKPMRIGVVAMGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G    +LG+++MDM   D+TD     +G  ++++G +I   DVA+A+ T  Y 
Sbjct: 283 GTPVLVAGQRSQLLGRVSMDMLCVDLTDVPQAGLGSTVELWGKNILASDVAVAADTIPYQ 342

Query: 357 LLVRIGTRYAKFY 369
           +   +  R  + Y
Sbjct: 343 IFCNL-RRVPRLY 354


>gi|298484845|ref|ZP_07002945.1| Alanine racemase, catabolic [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160699|gb|EFI01720.1| Alanine racemase, catabolic [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 357

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 187/376 (49%), Gaps = 38/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLARENSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR     A + +L G     E  +I + +   V+ S  QL     +    ++ P   
Sbjct: 63  ALELRAAGIHAPVLLLEGFFEADELALIVEHDFWTVVHSTWQL---EAIEQAQLAKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++DTG +R+GL   E       ++ + L  G+++ I+  SH A AD+ +S  +    E
Sbjct: 120 WLKIDTGMHRVGLYPHE----YQAAYQRLLVTGKVARIVLMSHFARADELNSGCSD---E 172

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QT 234
           +F    S  KG+  E SL +S  +L  P+     +RPGI LYG T    ++HP+    Q 
Sbjct: 173 QFAVFESFRKGLVAETSLKNSPAVLGWPHIPSDWSRPGIMLYGAT-PFGQAHPLADRLQP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T E++II +R+  AGE V YG      R   I V A+GYADGYP         H+P+ 
Sbjct: 232 VMTLESKIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYP--------RHAPT- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  
Sbjct: 283 --GTPVQIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIP 340

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++   +  R  + Y+
Sbjct: 341 YEIFCNL-RRVPRIYS 355


>gi|152987893|ref|YP_001351392.1| alanine racemase [Pseudomonas aeruginosa PA7]
 gi|150963051|gb|ABR85076.1| alanine racemase [Pseudomonas aeruginosa PA7]
          Length = 368

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 180/371 (48%), Gaps = 28/371 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVE 66
           R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  AG  D F V  +E
Sbjct: 16  RALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL--AGEADGFAVACIE 72

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR    +  I +L G     E ++I   +   V+ +  QL    +  S        
Sbjct: 73  EALELRAAGIREPILLLEGFFEAAELELIVAHDFWCVVHAAWQLEAIER-ASLARLLTVW 131

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLERFR 183
           L++D+G +R+G    E     H       G+++ I+  SH + AD+        QL  F 
Sbjct: 132 LKMDSGMHRVGF-FPEDFRAAHERLRAS-GKVAKIVMMSHFSRADELDCPRTDEQLAAFA 189

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAE 239
                 +G E SL +S  +L  P       RPGI LYG T    ++HP+    + V+T E
Sbjct: 190 AASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGAT-PFERAHPLADRLRPVMTLE 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R+  AGE V YG +    R   I V A+GYADGYP         H+P    G  
Sbjct: 248 SKVISVRELPAGEPVGYGARYSTERSQRIGVVAMGYADGYP--------RHAPD---GTL 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL 
Sbjct: 297 VFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLC 356

Query: 360 RIGTRYAKFYT 370
            +  R  + Y+
Sbjct: 357 NL-KRVPRVYS 366


>gi|330876475|gb|EGH10624.1| alanine racemase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 355

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 188/374 (50%), Gaps = 34/374 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARDSSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A I +L G     E  +I + +L  V+ ++ QL    +    G      L
Sbjct: 63  ALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHAIWQLGAIEQAQP-GKPLTVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLERF 182
           ++DTG +R+GL   E       ++ + L  G+++ ++  SH +CAD+ +S  +  Q+  F
Sbjct: 122 KLDTGMHRVGLHPSE----YRAAYQRLLATGKVARVVLMSHFSCADELNSACSDQQVAVF 177

Query: 183 RTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVV 236
               +  +G+  E SL +S  ++  P  H   +R GI LYG T   +++ P+    Q V+
Sbjct: 178 E---AARQGLVAETSLKNSPAVMGWPKIHSDWSRTGIMLYGAT-PFDQAQPLAERLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+++I +R+  AG+ + YG      R   I   A+GYADGYP         H+P+   
Sbjct: 234 TLESKVISVRELPAGDALGYGATFVSERPLRIGAVAMGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  +GT  Y 
Sbjct: 283 GTPVLIDGQRSRLLGRVSMDMLCVDLTDLPQAGLGSRVELWGKGVLASEVATQAGTIPYQ 342

Query: 357 LLVRIGTRYAKFYT 370
           +   +  R  + Y+
Sbjct: 343 IFCNL-RRVPRIYS 355


>gi|94971247|ref|YP_593295.1| alanine racemase [Candidatus Koribacter versatilis Ellin345]
 gi|94553297|gb|ABF43221.1| alanine racemase [Candidatus Koribacter versatilis Ellin345]
          Length = 411

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 189/383 (49%), Gaps = 35/383 (9%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++DL+AL++N+ ++++ ++  A+  AVVK +AYG G  + A AL   G + F VT+  E 
Sbjct: 34  EVDLSALRHNYRTLSSHVAPKAQICAVVKCDAYGHGALECAQALEAEGAKWFGVTNPSEA 93

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPYA 125
           + LR    + RI +L G   G+E+ + + +  P + +   V  L   +K        P  
Sbjct: 94  LVLRRGGIKGRILLLSGFWQGEEESVLEHDFTPAVWTEGHVAWLDAAAKRFG-RTKVPVH 152

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++DTG +RLG+   E        F  +   +  + SHLA ++   +     Q+  F   
Sbjct: 153 LKIDTGMSRLGVRWNELPTLLPKLFRARRLSIEGVWSHLASSEVVDAFDAQAQIANFEQA 212

Query: 186 ISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHP------ 231
           +++   +G++     LA+S+ + + P+  + + RPG+ LYG        N   P      
Sbjct: 213 LTYLADEGVKWKYRHLANSAAVAVRPSTWYDMVRPGLLLYGHCLPLTHTNHVSPDVHLQL 272

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++ + R++ IR+  AG+ V YG      + SL+A   +GY DGY   LS      
Sbjct: 273 ALKPVLSWKTRVVDIRRVPAGQGVGYGSTFTTRKPSLLATIPVGYGDGYLRALSN----- 327

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                  G+  ++G   PI G ++MD+T+ D++    + VGD + + G D    I+++++
Sbjct: 328 ------KGRALVRGEYAPIAGNVSMDLTIIDVSRIPGVAVGDEVTLIGRDGEKSIEIEEL 381

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    +  Y+++  I  R  + Y
Sbjct: 382 ARHYQSIAYEVMCGISKRVPRKY 404


>gi|113475275|ref|YP_721336.1| alanine racemase [Trichodesmium erythraeum IMS101]
 gi|110166323|gb|ABG50863.1| alanine racemase [Trichodesmium erythraeum IMS101]
          Length = 395

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 183/383 (47%), Gaps = 42/383 (10%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+  AL  N   + +L S   +   VVK +AYG G  KI+  +  AGV    V ++ E
Sbjct: 28  VEINDRALSYNVQQLKSLLSAKTQLMGVVKADAYGHGASKISKTILEAGVDRLAVATLPE 87

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           G++LRL   +  I +L  I  P Q + I    L P I +  Q   +S+ +S   + P   
Sbjct: 88  GIELRLAGIKPPILILGAIDRPEQIRAIAHWQLEPTICTPQQALVFSETLSYQ-TEPMLV 146

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
            L++DTG +RLG   Q+A++F    F + L  L +  I SHLA AD+    V   Q +RF
Sbjct: 147 HLKLDTGMSRLGTPWQQAVEFV--KFVQGLPNLKIASIYSHLATADNLDQTVMKQQHQRF 204

Query: 183 RTLI--------SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------GTDKINK 228
              I        S    I+  LA+S+  L  P  H+ + R G+++YG        DKIN 
Sbjct: 205 EEAIGLCGIGGKSFSSDIQLHLANSAATLTDPALHYDMVRVGLAIYGLYPAPHLQDKIN- 263

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V+  +AR+  ++   AG  VSYG Q    +   +AV  IGYADG P  LS    
Sbjct: 264 ---LKPVMQVKARVTQVKTIEAGTGVSYGYQFIAPKQMRLAVVGIGYADGLPRNLSN--- 317

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344
                     K  ++  ++P +G ITMD  M D++    +E G+ + + G      I  +
Sbjct: 318 --------RMKVIVRDRLIPQVGAITMDQLMLDVSAIPDLETGEVVTLLGQVGKHQISAE 369

Query: 345 DVALASGTTNYDLLVRIGTRYAK 367
           + A   GT ++++L     R  +
Sbjct: 370 NWANTLGTISWEILCGFKNRLPR 392


>gi|237731822|ref|ZP_04562303.1| alanine racemase [Citrobacter sp. 30_2]
 gi|226907361|gb|EEH93279.1| alanine racemase [Citrobacter sp. 30_2]
          Length = 356

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 180/368 (48%), Gaps = 40/368 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEGV 69
           IDL ALK N       + +AR  +VVK NAYG G E++  AL   G  D F + ++EE +
Sbjct: 9   IDLQALKQNLTITRQAAPDARVWSVVKANAYGHGIERVWNAL---GTTDGFAMLNLEEAI 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR    +  I +L G    ++  ++D   L   + S  QL     L +  +  P    L
Sbjct: 66  TLRERGWKGPILMLEGFFHAEDLTVYDNYRLTTCVHSNWQL---KALQNARLKAPLDVYL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +V++G NRLG  L E +            +G+++L+ SH A A+ P      +Q E    
Sbjct: 123 KVNSGMNRLGF-LPERVPTVWQQLRAMPNVGEMTLM-SHFADAEHP----EGIQ-EAMAR 175

Query: 185 LISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTVV 236
           +    + +E   SL++S+  L  P  H+   RPGI LYG +      D  N    ++ V+
Sbjct: 176 IAQATEELECRRSLSNSAATLWHPEAHYDWVRPGIILYGASPSGQWRDIANTG--LKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II I+   AG+ V YGG+   + +  I + A GYADGYP         H+PS   
Sbjct: 234 TLSSEIIGIQTLKAGDRVGYGGRYTASGEQRIGIVATGYADGYP--------RHAPS--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGVRTGTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVATAAGTVGYE 342

Query: 357 LLVRIGTR 364
           L+  +  R
Sbjct: 343 LMCSLALR 350


>gi|66043507|ref|YP_233348.1| alanine racemase [Pseudomonas syringae pv. syringae B728a]
 gi|75503888|sp|Q4ZZW2|ALR_PSEU2 RecName: Full=Alanine racemase
 gi|63254214|gb|AAY35310.1| Alanine racemase [Pseudomonas syringae pv. syringae B728a]
 gi|330972182|gb|EGH72248.1| alanine racemase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 357

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 118/374 (31%), Positives = 185/374 (49%), Gaps = 34/374 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RAFIDLQALRHNYQLARESSGG-KALAVVKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A + +L G     E  +I + +L  V+ +  QL    +    G      L
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELALIVEHDLWTVVHATWQLEAIEQ-ARLGKPITVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLERF 182
           ++DTG +R+GL   E        + + L  G+++ I+  SH + AD+ +S  +  QL  F
Sbjct: 122 KLDTGMHRVGLHPHE----YQAGYQRLLATGKVARIVLMSHFSRADELNSGCSDEQLAVF 177

Query: 183 RTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVV 236
            T     KG+  E SL +S  +L  P      +RPGI LYG T   ++ HP+    Q V+
Sbjct: 178 ETF---RKGLAAETSLKNSPAVLGWPQIPSDWSRPGIMLYGAT-PFDQVHPLADRLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E++II +R+   GE V YG      R   I V A+GYADGYP         H+P+   
Sbjct: 234 TLESKIISVRELPVGEPVGYGATFVCDRPLRIGVVAMGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    I G    +LG+++MDM   D+T+     +G  ++++G  +   +VA  + T  Y+
Sbjct: 283 GTPVQIDGQPSRLLGRVSMDMLCVDLTEVPQAGLGSRVELWGKQVLASEVAQRAETIPYE 342

Query: 357 LLVRIGTRYAKFYT 370
           +   +  R  + Y+
Sbjct: 343 IFCNL-RRVPRIYS 355


>gi|229015244|ref|ZP_04172279.1| Alanine racemase [Bacillus mycoides DSM 2048]
 gi|228746046|gb|EEL96014.1| Alanine racemase [Bacillus mycoides DSM 2048]
          Length = 340

 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 168/357 (47%), Gaps = 40/357 (11%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---------Y 84
           A VK N YG G  +++    N+GV    V S+EE +KLR    QA I +L         +
Sbjct: 2   ATVKANGYGHGAVEVSKKAINSGVDYLAVASLEEAIKLRKSDIQAPILILGYTPPSAANH 61

Query: 85  GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALD 144
            ++    + IFD      +S+  Q+         G      ++VDTG  RLGL  +EA D
Sbjct: 62  VVYWDLTQSIFDIEHAEALSTSGQI--------LGKKAKVHVKVDTGMGRLGLQAEEASD 113

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL-----ASS 199
           F H         L  + SH A AD+        Q  R++ L+   +  + S+     A+S
Sbjct: 114 FIHIVSRMDGLYLEGVYSHFATADEADKRYAEKQKNRWKRLLEELEKRKVSIPLFHIANS 173

Query: 200 SGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVVTAEARIILIRKALAGELVSY 256
           +  +  P+  + + R GIS+YG   + ++NK+   ++  +  + ++I I+    G  VSY
Sbjct: 174 AATIEMPDMTYDMVRIGISMYGLYPSKEVNKTKVNLRQAIQLKTKVIYIQTLEKGYGVSY 233

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           G        ++IA   IGYADGY   LSG       + ++     I G + P+ GKI MD
Sbjct: 234 GATNIERDKAIIATIPIGYADGYSRRLSG-------TAYV----LIHGQLAPVFGKICMD 282

Query: 317 MTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             M D+TD   + +GD + ++G      I LD+VA   GT +Y++   +G R  + Y
Sbjct: 283 FCMIDVTDIKGVNIGDEVVVYGGQGDYFISLDEVASMLGTISYEVACNLGQRVPRIY 339


>gi|330957316|gb|EGH57576.1| alanine racemase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 357

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 40/377 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AV+K +AYG G  ++A  L  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLARESSGG-KALAVIKADAYGHGAVRVAQTL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
            ++LR    +A I +L G     E  +I + +L  V+ S  QL    +      +HP   
Sbjct: 63  ALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHSTWQLEAIER------AHPGKP 116

Query: 124 --YALQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSV 177
               L++DTG +R+GL   E       ++ + L  G ++ I+  +H ACAD+ +S  ++ 
Sbjct: 117 LTVWLKLDTGMHRVGLHPSE----YRAAYQRLLSTGNVAKIVLMTHFACADELNSPSSAE 172

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----Q 233
           Q   F          E SL +S  ++  P      +R GI LYG T   +++ P+    Q
Sbjct: 173 QCAVFEATCQGLAA-ETSLKNSPAVMGWPKIPGDWSRAGIMLYGAT-PFDQAQPLAERLQ 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T E++II +R   AGE V YG      + S I V A+GYADGYP         H+P+
Sbjct: 231 PVMTLESKIISVRDLPAGEAVGYGATFVTDKPSRIGVVAMGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    I G    ++G+++MDM   D+T+     +G  ++++G  +   DVA  +GT 
Sbjct: 283 ---GTPVQIDGQRSRLVGRVSMDMLCVDLTELPQAGIGSRVELWGKAVLASDVAAQAGTI 339

Query: 354 NYDLLVRIGTRYAKFYT 370
            Y +   +  R  + Y+
Sbjct: 340 PYQIFCNL-RRVPRVYS 355


>gi|301017210|ref|ZP_07181991.1| alanine racemase [Escherichia coli MS 69-1]
 gi|300400341|gb|EFJ83879.1| alanine racemase [Escherichia coli MS 69-1]
          Length = 356

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 40/372 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAM---- 173

Query: 182 FRTLISHY-KGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPM 232
             T I    +G+E   SL++S+  L     HF   RPGI LYG +      D  N    +
Sbjct: 174 --TRIEQAAEGLECRRSLSNSAATLWHSEAHFDWVRPGIILYGASPSGQWRDIANTG--L 229

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P
Sbjct: 230 RPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAP 281

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
           +   G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT
Sbjct: 282 T---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGT 338

Query: 353 TNYDLLVRIGTR 364
             Y+L+  +  R
Sbjct: 339 VGYELMCALALR 350


>gi|156933648|ref|YP_001437564.1| alanine racemase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531902|gb|ABU76728.1| hypothetical protein ESA_01470 [Cronobacter sakazakii ATCC BAA-894]
          Length = 356

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 184/374 (49%), Gaps = 44/374 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL AL++N   +   +  +R  +VVK NAYG G +++  AL   G  D F + ++
Sbjct: 5   IQASLDLQALRHNLEVVRRAAPRSRVWSVVKANAYGHGLDRVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G     E  +FD   L   + S  QL     L    ++ P 
Sbjct: 62  EEAILLRERGWKGPILMLEGFFHADELPLFDKYRLTTSVHSNWQL---KALAEAKLNAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSS-HVNS 176
              L++++G NRLG   +      H  + +      +GQ++L+ +H A AD P       
Sbjct: 119 DVYLKINSGMNRLGFVPER----VHTIWQQLKTIANVGQITLM-AHFADADRPDGIDAAM 173

Query: 177 VQLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSH 230
           V++E+        +GI+A  SLA+S+  L  P  HF   RPGI LYG    G  +   + 
Sbjct: 174 VRIEQA------AEGIDAPRSLANSAAALWHPQAHFDWVRPGIVLYGASPSGQWRDIATS 227

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q V+T ++ II ++    G+ V YG + +  R+  I + A GYADGYP         H
Sbjct: 228 GLQPVMTLKSEIIGVQTLKPGDTVGYGSRYRAAREQRIGIVAGGYADGYP--------RH 279

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
           +P    G    + G    I+G ++MDM   D+T      +G  ++++G + K+DDVA A 
Sbjct: 280 APD---GTPVLVDGVRTGIVGTVSMDMLAVDLTPCPQAGIGSPVELWGNETKIDDVAAAC 336

Query: 351 GTTNYDLLVRIGTR 364
           GT  Y+L+  +  R
Sbjct: 337 GTIGYELMCALAPR 350


>gi|85858827|ref|YP_461029.1| alanine racemase [Syntrophus aciditrophicus SB]
 gi|85721918|gb|ABC76861.1| alanine racemase [Syntrophus aciditrophicus SB]
          Length = 661

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 172/378 (45%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL +   NW  +  L G A R   VVK +AYG G  +I+      G     V + +E
Sbjct: 13  VEVDLDSFTWNWAELRRLVGPAVRVLQVVKADAYGHGAIEISHTALKNGAACLGVANADE 72

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYAL 126
           GV+LR+    A I +L     G+ + I    L P +S +   + F   L   GV+ P  +
Sbjct: 73  GVQLRVSGITAPIIILSPSTGGEIREIIKYGLTPSLSDLLFASEFQRHLARAGVTSPVHI 132

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA----CADDPSSHVNSVQLERF 182
           ++DTG  R G+  +EA     N F      +  I +HLA    C D      N  Q   F
Sbjct: 133 EIDTGMGRGGMLCEEAPAIIRNIFGLPNIAVEGIFTHLASSEVCVD-----YNEQQWSLF 187

Query: 183 RTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTV 235
           R L      +  S     +A+S  IL  P +H  + RPG+  YG            ++ V
Sbjct: 188 RELTDRLNAMGISIPIKHMANSGAILNYPRFHLDMVRPGLMSYGIHPAPSTEDRADLRPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ + R++L+++  AG  + Y       R S IA   +GY DGY + LS           
Sbjct: 248 MSFKTRVVLLKEFPAGASIGYNRTYVTERPSRIATLPVGYGDGYGVILSN---------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
             G+  I+G   P++G+I+MDMT  D++      +GD + + G      I  +D+A+   
Sbjct: 298 -QGEVLIRGRRAPVVGRISMDMTTVDVSAIPDCHIGDEVVLMGRQGEEVISANDIAVRVR 356

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +YD+L  +G R  + +
Sbjct: 357 TISYDILCALGKRAPRIF 374


>gi|227824623|ref|ZP_03989455.1| alanine racemase [Acidaminococcus sp. D21]
 gi|226905122|gb|EEH91040.1| alanine racemase [Acidaminococcus sp. D21]
          Length = 381

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 175/374 (46%), Gaps = 27/374 (7%)

Query: 10  KIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++DL+A+ +N   +   L    +  AVVK +AYG G   +A A   AGV    V+  +E 
Sbjct: 9   EVDLSAIAHNVQVTRKVLKPGTKICAVVKADAYGHGAVPVATAALAAGVNYLAVSMTQEA 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS--SVPQLTFYSKLMSCGVSHPYAL 126
           ++LR     A I +L  +    EK + D N+   +   +V Q    + L    V+  + L
Sbjct: 69  LELREAGIMAPILILGTMTEEHEKALVDYNITQTVYDLAVAQELSAAALQENKVAKVH-L 127

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTG NR+G   +EA D           +L  + SH A AD+        Q  +F    
Sbjct: 128 AVDTGMNRIGCRPEEAADLAEAISKLPHVELEGMFSHFASADEMDKSFAESQYRKFMEAD 187

Query: 187 SHYK--GIEASLA---SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
              K  GI+  L    +S+GI    +    + R GI+LYG   +D + +   ++  ++ +
Sbjct: 188 RAIKDRGIQIPLVHIDNSAGITEMKHTECDMVRQGITLYGLWPSDDVERCLDLKPALSLK 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A ++ ++   AGE + YG   +      +A   +GYADGY   LS              +
Sbjct: 248 AEVVFVKDVPAGEKIGYGCTYETKAPMKVATIPLGYADGYSRALSN-------------R 294

Query: 300 GFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYD 356
           G+I  +GY  P++G+I MD  M D+T+   +  GD   IFGP  + LD +A   GT  Y+
Sbjct: 295 GYITIRGYKAPVVGRICMDQFMVDVTNVPGVHKGDEAVIFGPGGVSLDQLAKWVGTIPYE 354

Query: 357 LLVRIGTRYAKFYT 370
           L+  + TR  + YT
Sbjct: 355 LMCLLSTRVPRKYT 368


>gi|170079084|ref|YP_001735722.1| alanine racemase [Synechococcus sp. PCC 7002]
 gi|169886753|gb|ACB00467.1| alanine racemase [Synechococcus sp. PCC 7002]
          Length = 399

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 180/374 (48%), Gaps = 25/374 (6%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  AL  N  ++ + L+      AVVK +AYG G  K+A  +  AG     + ++ E
Sbjct: 35  VEIDHQALAANIRALKDILAPQTALMAVVKADAYGHGAVKVAETVLKAGASWLAIATLGE 94

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125
           GV+LR     A I VL   +  +E + I   +L P + ++ Q+T +++ L   G + P  
Sbjct: 95  GVELREAGITAPILVLGATNTTEEIEAIAHWDLQPTLCNLSQVTIFNEALARLGKTLPVH 154

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++DTG +RLG   +EAL F           ++ I SH A ADDP       Q +RF+  
Sbjct: 155 LKIDTGMSRLGTRWEEALPFVAAVHQAPHLNIASIYSHFATADDPDPTTMDQQHQRFQAA 214

Query: 186 IS--HYKGI---EASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           I+    +GI   +  +++S+  L   + H+ L R G+S+YG      ++    ++ V+  
Sbjct: 215 IAKLEQQGIPIPKRHISNSAATLHSRDLHYDLVRLGLSIYGVYPAPHLSPKVHLKPVLQV 274

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +ARI  ++       VSYG +     D+  AV  IGYADG P  LS              
Sbjct: 275 KARITQLKTLPPDTGVSYGHRFITATDTKTAVVGIGYADGVPRRLSN-----------NL 323

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           K  + G   P +G ITMD  M D++    ++VGD + + G D    + +D  A   GT +
Sbjct: 324 KVLVNGAFAPQIGAITMDQLMLDVSHLPDVQVGDVVTLIGTDHDQQLTVDQWANQLGTIS 383

Query: 355 YDLLVRIGTRYAKF 368
           +++L     R  + 
Sbjct: 384 WEILCGFKHRLPRI 397


>gi|262195116|ref|YP_003266325.1| alanine racemase [Haliangium ochraceum DSM 14365]
 gi|262078463|gb|ACY14432.1| alanine racemase [Haliangium ochraceum DSM 14365]
          Length = 397

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 186/389 (47%), Gaps = 38/389 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           H+    R++IDL A+  N   +  +S  A   AVVK +AYG G   +A +L   G  + F
Sbjct: 3   HTVRPTRVEIDLDAIHANARVLREVS-QAALYAVVKADAYGHGARVVARSLAEVGAAEGF 61

Query: 62  VTS-VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
             S VEEG +LR     A I V+     G E  I   +L+  +SS   +   +   +   
Sbjct: 62  AVSLVEEGCELRDAGIDAPILVMGPALRGGEDEIVGRDLMAALSSFDDIARLAAAAARRG 121

Query: 121 SH-PYALQVDTGFNRLGLS---LQEALDF--THNSFNKKLGQLSLIISHLACAD--DPSS 172
           +  P  L+VDTG  RLG++   + EALD    H S      ++  ++SHLACAD  DP+ 
Sbjct: 122 ARLPVHLKVDTGMGRLGIAPARVGEALDHIRAHGSL-----EVVGLMSHLACADGDDPAD 176

Query: 173 H--VNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225
              ++  Q+ RF    +  +      +   LA+SS  LL P     L R G++LYG + +
Sbjct: 177 PGCMSYEQIARFDEAAAVLRARGLRHVRQHLANSSATLLFPEARRDLVRCGLALYGNSQQ 236

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             +   ++  V     I  +R+  AG  VSYG   +   D+ +AV  IGYADG P  L+G
Sbjct: 237 PERVPRLRQGVRLVTEIAQVREVAAGSSVSYGALWRAPHDARVAVIPIGYADGAPRRLTG 296

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD---- 340
           +           G+  I G   P++G ++MDMTM D++    S+  GD + + G      
Sbjct: 297 V-----------GEVLIAGRRCPMVGAVSMDMTMIDVSALGGSVGEGDEVVLLGEQGDDA 345

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I + ++A  +G   Y++   +  R  + Y
Sbjct: 346 ISVHEMASWTGLCEYEVTCGLSKRVPRVY 374


>gi|126175832|ref|YP_001051981.1| alanine racemase [Shewanella baltica OS155]
 gi|254802375|sp|A3D8P9|ALR_SHEB5 RecName: Full=Alanine racemase
 gi|125999037|gb|ABN63112.1| alanine racemase [Shewanella baltica OS155]
          Length = 358

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 182/378 (48%), Gaps = 40/378 (10%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N F R +I  +AL+ N  ++   +  +R  AVVK N YG G   +A  L +A    F + 
Sbjct: 2   NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVANCLVSA--DGFGLA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++E ++LR     AR+ +L G     +  ++   ++  V+    QL    + +   +S 
Sbjct: 60  RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTV---LSK 116

Query: 123 PYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---------IISHLACADDPS 171
           P    L+VD+G +RLG        FT   F+    +L           +++H ACAD+P 
Sbjct: 117 PVTVWLKVDSGMHRLG--------FTPEQFSTVYDRLMACPNVAKPIHLMTHFACADEPD 168

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINK 228
           +   SVQ+  F +L +   G   +LA+S+G L  P       RPGI+LYG    T     
Sbjct: 169 NTYTSVQMAAFNSLTAGLPGFR-TLANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGA 227

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +H +   +   +++I +R   A + V YG      +D+ + V AIGY DGYP        
Sbjct: 228 NHGLVPAMELVSQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYP-------- 279

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
            ++P    G   ++ G  VPI+G+++MDM   D+      +VGD   ++G  + +++VA 
Sbjct: 280 RNAPE---GTPVWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAE 336

Query: 349 ASGTTNYDLLVRIGTRYA 366
             GT  Y+L+ ++  R A
Sbjct: 337 HIGTIAYELVTKLTPRVA 354


>gi|289624832|ref|ZP_06457786.1| alanine racemase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647733|ref|ZP_06479076.1| alanine racemase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866551|gb|EGH01260.1| alanine racemase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 357

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 187/376 (49%), Gaps = 38/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLARENSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR     A + +L G     E  +I + +   V+ S  QL     +    ++ P   
Sbjct: 63  ALELRAAGIHAPVLLLEGFFEADELALIVEHDFWTVVHSTWQL---EAIEQAQLAKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++DTG +R+GL   E       ++ + L  G+++ ++  SH A AD+ +S  +    E
Sbjct: 120 WLKIDTGMHRVGLYPHE----YQAAYQRLLVTGKVARVVLMSHFARADELNSGCSD---E 172

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QT 234
           +F    S  KG+  E SL +S  +L  P+     +RPGI LYG T    ++HP+    Q 
Sbjct: 173 QFAVFESFRKGLVAETSLKNSPAVLGWPHIPSDWSRPGIMLYGAT-PFGQAHPLADRLQP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T E++II +R+  AGE V YG      R   I V A+GYADGYP         H+P+ 
Sbjct: 232 VMTLESKIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYP--------RHAPT- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  
Sbjct: 283 --GTPVQIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIP 340

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++   +  R  + Y+
Sbjct: 341 YEIFCNL-RRVPRIYS 355


>gi|237797761|ref|ZP_04586222.1| alanine racemase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020611|gb|EGI00668.1| alanine racemase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 357

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 185/375 (49%), Gaps = 36/375 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLARESSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A I +L G     E  +I + +L  V+ ++ QL    K     +  P   
Sbjct: 63  ALELRAAGLRAPILLLEGFFEADELALIVEHDLWTVVHTIWQLEAIEK---ARLDKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLS--LIISHLACADDPSSHVNSVQL 179
            L++DTG +R+GL   E     + + +++L   G+++  ++++H ACAD+  S  ++ Q 
Sbjct: 120 WLKLDTGMHRVGLYPSE-----YRAAHQRLLASGKVAKVVLMTHFACADELDSPSSAEQY 174

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTV 235
             F          E SL +S  +L  P      +R GI LYG T    +S P+    Q V
Sbjct: 175 AVFEATCQGLAA-ETSLKNSPAVLGWPKIRSDWSRTGIMLYGAT-PFGQSQPLADRLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E++II +R+  AGE V YG      R   + VAA+GYADGYP         H+PS  
Sbjct: 233 MTLESKIISVREVPAGEAVGYGATFVSDRPLRVGVAAMGYADGYP--------RHAPS-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+++MDM   D+T      +G  ++++G  +   +VA  + T  Y
Sbjct: 283 -GTPVHVDGQRSRLIGRVSMDMLCVDLTGLPQARLGSRVELWGKGVLASEVAAQAETIPY 341

Query: 356 DLLVRIGTRYAKFYT 370
            +   +  R  + Y+
Sbjct: 342 QIFCNL-RRVPRIYS 355


>gi|217971929|ref|YP_002356680.1| alanine racemase [Shewanella baltica OS223]
 gi|254802374|sp|B8E9P2|ALR_SHEB2 RecName: Full=Alanine racemase
 gi|217497064|gb|ACK45257.1| alanine racemase [Shewanella baltica OS223]
          Length = 358

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 182/378 (48%), Gaps = 40/378 (10%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N F R +I  +AL+ N  ++   +  +R  AVVK N YG G   +A  L +A    F + 
Sbjct: 2   NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVAHCLVSA--DGFGLA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++E ++LR     AR+ +L G     +  ++   ++  V+    QL    + +   +S 
Sbjct: 60  RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTV---LSK 116

Query: 123 PYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---------IISHLACADDPS 171
           P    L+VD+G +RLG        FT   F+    +L           +++H ACAD+P 
Sbjct: 117 PVTVWLKVDSGMHRLG--------FTPEQFSTVYDRLMACPNVAKPIHLMTHFACADEPD 168

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINK 228
           +   SVQ+  F +L +   G   +LA+S+G L  P       RPGI+LYG    T     
Sbjct: 169 NTYTSVQMAAFNSLTAGLPGFR-TLANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGA 227

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +H +   +   +++I +R   A + V YG      +D+ + V AIGY DGYP        
Sbjct: 228 NHGLVPAMELVSQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYP-------- 279

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
            ++P    G   ++ G  VPI+G+++MDM   D+      +VGD   ++G  + +++VA 
Sbjct: 280 RNAPE---GTPVWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAE 336

Query: 349 ASGTTNYDLLVRIGTRYA 366
             GT  Y+L+ ++  R A
Sbjct: 337 HIGTIAYELVTKLTPRVA 354


>gi|26991945|ref|NP_747370.1| alanine racemase [Pseudomonas putida KT2440]
 gi|24987073|gb|AAN70834.1|AE016728_3 alanine racemase, catabolic [Pseudomonas putida KT2440]
          Length = 357

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 186/366 (50%), Gaps = 35/366 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--Y 124
            ++LR    +A + +L G     E  +I + +L  V+ S+ QL    K     +  P   
Sbjct: 63  ALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEK---TPLHKPLNV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++D+G +R+GL  ++     H+++ + L  G++S I+  +H A AD+  +   S Q+ 
Sbjct: 120 WLKLDSGMHRVGLHPKD----YHDAYQRLLASGKVSRIVLMTHFARADELDADATSQQIA 175

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
            F    +  +G+  E SL +S G+L  P       RPG+ LYG T       ++  +Q V
Sbjct: 176 VFE---AARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++R+I +R+  AGE V YG +    R + + V A+GYADGYP          +P+  
Sbjct: 233 MTLQSRVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYP--------RQAPN-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+++MDM   D+TD     VG  ++ +G  +   +VA  +GT  Y
Sbjct: 283 -GTPVLVAGKRTQLIGRVSMDMLSIDLTDVPQATVGSPVEFWGKQVLASEVAAHAGTIPY 341

Query: 356 DLLVRI 361
            +   +
Sbjct: 342 QIFCNL 347


>gi|300857181|ref|YP_003782165.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
 gi|300437296|gb|ADK17063.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
          Length = 385

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 182/380 (47%), Gaps = 36/380 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL+ + +N  S+  +  +     VVK +AYG G   +AP L   G     V  V EG
Sbjct: 10  VEVDLSIIASNMRSIRDVCKDKEIFGVVKADAYGHGAIDVAPVLLENGATRLAVALVSEG 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-----P 123
           ++LR      +I VL    P   + + +  L PV+S       Y+K +S   +       
Sbjct: 70  IELRKAGVTCQINVLGITPPNLFRELLEYELEPVVSDYD----YAKALSESAAALNKTVR 125

Query: 124 YALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
             L+VDTG  R+G L+ ++A+D        KL  + +  I SH + A + +   +  Q E
Sbjct: 126 IHLKVDTGLGRIGFLTTEKAVD--EAVMISKLPNIFIESIFSHFSSAGEANKEYSYKQFE 183

Query: 181 RFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSH-PMQ 233
           +F+  I+    KG+   L   A+SS I   P  +    RPG  +YG  +D + +   P++
Sbjct: 184 KFQWFINKMEEKGLYIKLKHIANSSAIWNLPETYLDGVRPGTIIYGCSSDDVKREVIPIK 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T +A I+ +++  AG+ + YG + +  R S+I    +GYADGY   LSG        
Sbjct: 244 PAMTWKANILFLKELEAGQYIGYGRKFRTERKSIIGTLGVGYADGYSRMLSG-------- 295

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                K  I G   P++G I MD  M D+TD   +++GD + + G      I  DD+A  
Sbjct: 296 ---KAKVIINGKFAPVVGNICMDQCMVDLTDIGDVKLGDEVILMGSQGELKIDADDIAKL 352

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT N +++  IG R  + Y
Sbjct: 353 IGTNNNEVMCLIGRRVPRVY 372


>gi|104784314|ref|YP_610812.1| alanine racemase [Pseudomonas entomophila L48]
 gi|122401266|sp|Q1I2V7|ALR_PSEE4 RecName: Full=Alanine racemase
 gi|95113301|emb|CAK18029.1| alanine racemase 2, PLP-binding, catabolic [Pseudomonas entomophila
           L48]
          Length = 357

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 183/364 (50%), Gaps = 31/364 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L+G A+  AVVK +AYG G  + A AL       F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARELTG-AKALAVVKADAYGHGAVRCALALETEA-DGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + +L  V+ S+ QL     +    V  P   
Sbjct: 63  ALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQL---EAIEQTPVRKPLTI 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLERF 182
            L++DTG +R+G+  ++  D          G++S I+  SH A AD+  +     Q+  F
Sbjct: 120 WLKMDTGMHRVGVHPKDYQDAYQRLLAS--GKVSRIVLMSHFARADELDAAATEQQVAVF 177

Query: 183 RTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHP--MQTVVT 237
               +  +G+  E SL +S  +L  P+      RPGI LYG T  ++ ++    +Q V+T
Sbjct: 178 E---AARQGLSAECSLRNSPAVLGWPSIKSDWVRPGIMLYGATPFEVAQAEAARLQPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++RII +R+  AGE V YG +    R + + V A+GYADGYP          +P+   G
Sbjct: 235 LQSRIISVRELPAGEPVGYGAKFISPRPTRVGVVAMGYADGYP--------RQAPT---G 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G    ++G+++MDM   D+T+     VG  ++++G  +   DVA+ +GT  Y +
Sbjct: 284 TPVVVAGKRTQLIGRVSMDMLCVDLTEVPEATVGSPVELWGKQVLASDVAMQAGTIPYQI 343

Query: 358 LVRI 361
              +
Sbjct: 344 FCNL 347


>gi|317485550|ref|ZP_07944427.1| alanine racemase [Bilophila wadsworthia 3_1_6]
 gi|316923230|gb|EFV44439.1| alanine racemase [Bilophila wadsworthia 3_1_6]
          Length = 384

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 177/376 (47%), Gaps = 30/376 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           FL   I    L+N  H++  L + +     V+K +AYG G   +A  L   G+Q   V S
Sbjct: 2   FLSSAIITVHLENLRHNLKTLLARHPSLMPVIKADAYGHGVVAVARVLAEEGIQHMAVGS 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII---FD-TNLIPVISSVPQLTFYSKLMSCGV 120
           V EG  LR     A +  L G+   ++  +   +D T L+    S+ ++   S L     
Sbjct: 62  VGEGALLRQEGHTAFLLALMGLARDEDTALAASYDITPLVHSRESLERILAQSHLTGRAK 121

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQL 179
               A++ DTG +RLG  + EA +        K  +  L++SHLA +D P+       Q 
Sbjct: 122 PLTVAIKFDTGMSRLGFRVDEAAELADYLRTLKEVRPVLVMSHLAASDTPALDDFTHEQA 181

Query: 180 ERF----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG-----TDKINKSH 230
            RF     ++ + + G++ SL +S G+L  P+Y   L RPG++LYGG     TD+     
Sbjct: 182 RRFHEATESMKAVFPGLKTSLTNSPGLLCWPSYVGDLARPGVTLYGGNPLHGTDRAKLGM 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +  V+   A ++ +   + G  VSYG      +D   AV   GYADGYP +LS      
Sbjct: 242 GLLPVMEMAAPVLSVHPVVKGATVSYGCLYTAPKDIRAAVVGAGYADGYPRSLS------ 295

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                + G   I+G   PILG++ M M + D+TD   +E GD   + G      I+ +++
Sbjct: 296 -----MRGSVLIRGQRAPILGRVCMQMCIVDVTDIPGVEPGDTAYLLGGSGPLAIRPEEL 350

Query: 347 ALASGTTNYDLLVRIG 362
           A   GT +Y++   +G
Sbjct: 351 AEWWGTISYEVFCALG 366


>gi|224028214|dbj|BAH23434.1| alanine racemase [Pseudomonas taetrolens]
          Length = 357

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 186/366 (50%), Gaps = 35/366 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + +L  V+ S+ QL    +     +  P   
Sbjct: 63  ALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIERTQ---LHKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++D+G +R+GL  ++     H ++ + L  G+++ I+  SH A AD+  +   + Q+ 
Sbjct: 120 WLKLDSGMHRVGLHPKD----YHEAYQRLLASGKVARIVLMSHFARADELDADATAQQIA 175

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
            F    +  +G+  E SL +S G+L  P       RPG+ LYG T       ++  +Q V
Sbjct: 176 VFE---AARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAERLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++R+I +R+  AGE V YG +    R + + V A+GYADGYP          +P+  
Sbjct: 233 MTLQSRVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYP--------RQAPN-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+++MDM   D+TD     VG  ++++G  +   +VA  +GT  Y
Sbjct: 283 -GTPVLVAGKRTQLIGRVSMDMLSIDLTDVPEATVGSPVELWGKHVLASEVAAHAGTIPY 341

Query: 356 DLLVRI 361
            +   +
Sbjct: 342 QIFCNL 347


>gi|313501244|gb|ADR62610.1| DadX [Pseudomonas putida BIRD-1]
          Length = 357

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 185/366 (50%), Gaps = 35/366 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I +  L  V+ S+ QL    K     +  P   
Sbjct: 63  ALELRAAGIKAPVLLLEGFFEASELALIAEHGLWCVVHSLWQLEAIEK---TPLHKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++D+G +R+GL  ++     H+++ + L  G++S I+  SH A AD+  +   + Q+ 
Sbjct: 120 WLKLDSGMHRVGLHPKD----YHDAYQRLLASGKVSRIVLMSHFARADELDADATAQQIA 175

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
            F    +  +G+  E SL +S G+L  P       RPG+ LYG T       ++  +Q V
Sbjct: 176 VFE---AARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++R+I +R+  AGE V YG +    R + + V A+GYADGYP          +P+  
Sbjct: 233 MTLQSRVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYP--------RQAPN-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+++MDM   D+TD     VG  ++ +G  +   +VA  +GT  Y
Sbjct: 283 -GTPVLVAGKRTQLIGRVSMDMLSIDLTDVPQATVGSPVEFWGKQVLASEVAAHAGTIPY 341

Query: 356 DLLVRI 361
            +   +
Sbjct: 342 QIFCNL 347


>gi|270157427|ref|ZP_06186084.1| alanine racemase [Legionella longbeachae D-4968]
 gi|269989452|gb|EEZ95706.1| alanine racemase [Legionella longbeachae D-4968]
          Length = 353

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 185/369 (50%), Gaps = 39/369 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+ +AL +N   +   +   +  A+VK NAYG G   +AP L    V  F V  +EE + 
Sbjct: 3   IEPSALLHNLEQIKRFAPGKKIIAMVKANAYGCGVHIVAPVL-EGHVDAFGVACIEEALI 61

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL--Q 127
           L     +    +  G+  P + KI+       VI    QL +   L++  ++ P  L  +
Sbjct: 62  LHKIGSRTPCILFQGVFSPDEFKIVAQHQFGCVIHQPHQLQW---LLNTPLNTPIKLWVK 118

Query: 128 VDTGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           V+TG +RLG   QE  +      T    +K +G    +++HLACAD+P    N  Q+  F
Sbjct: 119 VNTGMHRLGFKPQELHEVMSALQTCTWVDKDIG----LMTHLACADEPERIENYQQISLF 174

Query: 183 RTL-ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH------PMQTV 235
             + I+ +   + S+A+S+ I+  P  H  + RPGI LYG +   N++       P+   
Sbjct: 175 ENISITGFS--QRSIANSAAIISFPQTHADVVRPGIMLYGVSPFANQTSIELGLLPVMRF 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           V+A   I  +        V Y G  K  + S+I + A GY DGYP  ++    E++P   
Sbjct: 233 VSA---ISAVHHNPPFAPVGYSGIWKSEKHSVIGIVAAGYGDGYPRHIA----ENTPV-- 283

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
                +++G  VPI+G+++MDM   D+T+   ++ G  ++++G +I ++ VA A+GT+ Y
Sbjct: 284 -----WVQGKEVPIVGRVSMDMLAVDLTEHQEVKPGAPVELWGKNILVERVAKAAGTSGY 338

Query: 356 DLLVRIGTR 364
           +LL +I  R
Sbjct: 339 ELLCQISER 347


>gi|291542822|emb|CBL15932.1| alanine racemase [Ruminococcus bromii L2-63]
          Length = 710

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 182/375 (48%), Gaps = 35/375 (9%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL  L++N  ++  A+       AVVK  AYG G  +I+  L   GV+ F V +++E
Sbjct: 345 IEIDLNNLEHNVKTLRKAMPPKCELMAVVKAQAYGHGAYEISTHLEKIGVRAFAVATIDE 404

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ LR Y  +  I +L      +   +   NLI  + S     + + L   GV     ++
Sbjct: 405 GISLRKYGIRGEILILGYTSIDRASELKKYNLIQTLIS---FEYANALNRQGVMVNAHIK 461

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-----QLERF 182
           +DTG +RLG+   + LD     F  K   +  I +HL C+D  SS  + +     Q++ F
Sbjct: 462 IDTGMHRLGIPSADFLD-VEKVFTMKNLNVCGIFTHLCCSD--SSMPDDIAFTRGQIDGF 518

Query: 183 RTLISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQ 233
             LI H K  GI   +  + SS G L  P       R G++LYG      D       ++
Sbjct: 519 YNLIDHLKKTGINIPKLHIQSSYGFLNYPELKCSYVRTGVALYGVKSLPDDNTELLLDLR 578

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++ ++R++LIR+   G+ V YG      R+S IA+  IGY DG+P +LS  +      
Sbjct: 579 PVLSLKSRVVLIRQIEKGDSVGYGRSFVAERNSRIAILPIGYGDGFPRSLSNGN------ 632

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
               G+  I  Y+VP++G+I MD    DITD+  I  GD   +       D+  D VA  
Sbjct: 633 ----GRALIGQYIVPVIGRICMDQLAIDITDAEGIAAGDIATLIDTDGCTDLSADVVAKN 688

Query: 350 SGTTNYDLLVRIGTR 364
           S + + +LL R+G R
Sbjct: 689 SNSISNELLCRMGER 703


>gi|301059502|ref|ZP_07200415.1| alanine racemase [delta proteobacterium NaphS2]
 gi|300446397|gb|EFK10249.1| alanine racemase [delta proteobacterium NaphS2]
          Length = 372

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 172/371 (46%), Gaps = 20/371 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  ++L A+++N  +     G N +  AVVK + YG G  +++    ++G     V   E
Sbjct: 12  RAVVNLGAVEHNIAAAREKIGKNRKLMAVVKADGYGHGALEVSTKALSSGADCLGVAFPE 71

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYA 125
           E   LR     A I  L  I P +   + D  L   + S+           +  V     
Sbjct: 72  EAEPLRKAGIDAPILALGLIQPDEAYKVIDLGLEQTVCSLELAEALNGAAGNASVKIDVH 131

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++VDTG  R+G+   + L++       K   L  I SH ACAD+  +   + Q+  F   
Sbjct: 132 IKVDTGMGRIGVLPHDLLEYCRKIRQLKHLNLKGIFSHFACADENDADFTNRQIRIFDQA 191

Query: 186 ISHY--KGI---EASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           +      GI   +  LA+S+GIL  P  H+ L RPGI +YG   + +I +S  +   +T 
Sbjct: 192 VREMAASGISVPQKHLANSAGILAHPASHYDLVRPGIMIYGLYPSPEIARSVSLIPAMTL 251

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +++I  +++      +SYG     +R ++IA   +GYADGY   LS              
Sbjct: 252 KSKITQVKRVSRETPISYGRTYYTSRSAMIATLPVGYADGYNRRLSNRSF---------- 301

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I+G   P++G++ MDM MFD+T   ++  GD   +FG    +DD+A    T NY+++
Sbjct: 302 -AIIRGERAPLVGRVCMDMCMFDVTAIKNVRPGDEAILFGESPTIDDIAKGLDTINYEVV 360

Query: 359 VRIGTRYAKFY 369
             +G R  + Y
Sbjct: 361 CAVGKRVPRIY 371


>gi|83816434|ref|YP_444716.1| alanine racemase [Salinibacter ruber DSM 13855]
 gi|83757828|gb|ABC45941.1| alanine racemase [Salinibacter ruber DSM 13855]
          Length = 450

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 171/373 (45%), Gaps = 25/373 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G A   A++K +AYG G   +A A Y AG++ + V  + EGV 
Sbjct: 63  VDLAAIRHNAGVLQERAGGADVMAIIKADAYGHGVRPVAQAAYEAGIRHYGVARLPEGVH 122

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           LR      RI VL    P Q     + +L   +SS        +  S        + VDT
Sbjct: 123 LREAGHGGRILVLGAPAPTQLPRYAEYDLDLTVSSADVAAAVVRHASPEAPLRVHVTVDT 182

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR-TLISHY 189
           G  RLGL+  +         +    +L+ + +H A AD P S     QL+RFR  + +  
Sbjct: 183 GMGRLGLAPDDVPAVMTRLADASGVRLAGLWTHFATADAPGSSFAQTQLDRFRAVVGAVD 242

Query: 190 KGIEASLASSSGILL---GPNYHF--QLTRPGISLYG--GTDKINKSHPMQTVVTAEARI 242
             +E   A+++G LL    P + F   L R GI+LYG   T +++    ++  +   AR+
Sbjct: 243 VDVEHVHAANTGGLLTIGAPTHEFDASLVRSGIALYGLAATPELSARLDLRPAMRLAARV 302

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             ++   AG  +SYG Q +  R + IA   IGY DGYP   SG  S             I
Sbjct: 303 THLKTVPAGTPISYGAQWEAPRRTRIATLGIGYGDGYPRRCSGRASVR-----------I 351

Query: 303 KGYMVPILGKITMDMTMFDI-----TDSLSIEVGDYIQIFGPDIKLD-DVALASGTTNYD 356
            G   PI+G I MDM M D+       +  ++ GD   +FGP      DVA  S T  Y+
Sbjct: 352 GGASCPIVGTICMDMCMVDLGPPNEAPATRVDRGDEAVLFGPAGPTAYDVAQWSDTIPYE 411

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + +
Sbjct: 412 ILCGVSPRVPRRH 424


>gi|291614600|ref|YP_003524757.1| alanine racemase [Sideroxydans lithotrophicus ES-1]
 gi|291584712|gb|ADE12370.1| alanine racemase [Sideroxydans lithotrophicus ES-1]
          Length = 353

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 184/365 (50%), Gaps = 26/365 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL+NN   +   + ++R  AV+K NAYG G  ++A AL  A  + F +  V + + 
Sbjct: 9   IDLSALQNNLR-VARRTASSRIMAVIKANAYGHGLLRVAEALNEA--EGFALLDVRDAIA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    +  I +L G    +E  ++ +  L  VI S  QL     L +C   +     L+
Sbjct: 66  LREAGFRQTILLLEGFFDAEELPLLAEYELGSVIHSTRQLAM---LDACPRRNSLEVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NRLG + ++              +   +++H + AD+P       QLE F+ L +
Sbjct: 123 INTGMNRLGFAPEQVPAAMEKLRKHPAVRDITLMTHFSHADEPEGVAE--QLELFKGLTA 180

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
            Y+ +  SLA+S+ +L  P+ H +  RPGI LYG +   D   +   ++ V+T  + II 
Sbjct: 181 AYR-LPRSLANSAALLRYPSTHSEWVRPGIMLYGASPFADASAQQLGLRPVMTLTSEIIS 239

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  AG+ V Y G  +  +   I   A GYADGYP         H+P+   G    + G
Sbjct: 240 VRELKAGDRVGYAGLFRADKTMRIGTVACGYADGYP--------RHAPT---GTPIQVNG 288

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
                LG+++MDM   D+++    ++G  + ++G  + +++VA ++GT +Y+L+  +  R
Sbjct: 289 QRTRTLGRVSMDMLSVDLSEIPDADIGSPVTLWGTGLSVEEVAKSAGTISYELMCALTAR 348

Query: 365 YAKFY 369
               Y
Sbjct: 349 VPVKY 353


>gi|261822874|ref|YP_003260980.1| alanine racemase [Pectobacterium wasabiae WPP163]
 gi|261606887|gb|ACX89373.1| alanine racemase [Pectobacterium wasabiae WPP163]
          Length = 359

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 175/367 (47%), Gaps = 24/367 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +  L+  ++  AVVK NAYG G  + A    +A    + V  + E + 
Sbjct: 8   ISRRALRHNLQRIRQLAPGSQVVAVVKANAYGHGMIESAHTFCDADC--YGVARLSEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     +  ++ +  L   + S  QL   + L    +  P    ++
Sbjct: 66  LRAAGITKPIVLLEGFFSADDLPLLAEHQLETAVHSPEQL---AALEQATLPQPLRVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F    +  + + Q   I+SH   AD+P +     QL  F    
Sbjct: 123 LDTGMHRLGVLPEQADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQLACFDAFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI LYG +  D  + +H   Q  +T  + +I
Sbjct: 183 QGKPGAQ-SIAASGGILLWPQAHRDRVRPGIILYGVSPLDNEDAAHFGFQPAMTFTSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG      RD+ + V A+GY DGYP          +P+   G    I 
Sbjct: 242 AVREHKAGEAVGYGSTWTSPRDTRLGVVAVGYGDGYPRC--------APA---GTPVLIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP+ G+++MDM   D+      +VGD   ++GP + ++ +A  +G + Y+L+ R+  
Sbjct: 291 GREVPLSGRVSMDMITIDLGPDAQDKVGDEAILWGPALSVERIAAHTGVSAYELITRLTQ 350

Query: 364 RYAKFYT 370
           R    YT
Sbjct: 351 RATLEYT 357


>gi|73763193|gb|AAZ83976.1| alanine racemase [Pseudomonas putida]
          Length = 357

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 186/366 (50%), Gaps = 35/366 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + +L  V+ S+ QL    +     +  P   
Sbjct: 63  ALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIERTQ---LHKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++D+G +R+GL  ++     H ++ + L  G+++ I+  SH A AD+  +   + Q+ 
Sbjct: 120 WLKLDSGMHRVGLHPKD----YHEAYQRLLASGKVARIVLMSHFARADELDADATAQQIA 175

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
            F    +  +G+  E SL +S G+L  P       RPG+ LYG T       ++  +Q V
Sbjct: 176 VFE---AARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAERLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++R+I +R+  AGE V YG +    R + + V A+GYADGYP          +P+  
Sbjct: 233 MTLQSRVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYP--------RQAPN-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+++MDM   D+TD     VG  ++++G  +   +VA  +GT  Y
Sbjct: 283 -GTPVLVAGKRTQLIGRVSMDMLSIDLTDVPEATVGSPVELWGKHVLAREVAAHAGTIPY 341

Query: 356 DLLVRI 361
            +   +
Sbjct: 342 QIFCNL 347


>gi|307150203|ref|YP_003885587.1| alanine racemase [Cyanothece sp. PCC 7822]
 gi|306980431|gb|ADN12312.1| alanine racemase [Cyanothece sp. PCC 7822]
          Length = 407

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 174/364 (47%), Gaps = 25/364 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  AL +N  S+   LS +    AVVK +AYG G  ++A     AG     + ++ E
Sbjct: 30  IEIDHHALAHNIRSIKQILSPSTALMAVVKADAYGHGAVRVAQTALQAGATWLAIATLGE 89

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           G++LR     A I +L  I+ P +   I    L P + +  Q L F   L     S P  
Sbjct: 90  GIELREAGIAAPILILGAINTPAEIATIAQWKLQPTLCNPQQALVFSETLTKLDQSLPVH 149

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++DTG +RLG    EA  F          +++ I SHLA ADDP   V  +Q +RF   
Sbjct: 150 LKLDTGMSRLGTIWTEAAAFVQLVQQLPYLKIASIYSHLATADDPDPTVMRLQHQRFEAA 209

Query: 186 ISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           I+  K  GI       A+S+  L  P+ H+ L R G+ LYG      + +S  ++ V+  
Sbjct: 210 IAEIKANGITPPRLHFANSAATLTDPSLHYDLVRVGLGLYGLYPAPHLRESVDLKPVLQV 269

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +AR+  ++   AG  VSYG Q    R   IAV  IGYADG    LS              
Sbjct: 270 KARVTQVKTIPAGTGVSYGYQFISDRPLRIAVVGIGYADGVQRNLSN-----------RL 318

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +  ++G  +  +G ITMD  M D+++   ++ G+ + + G D    I  D+ A   GT +
Sbjct: 319 EVLVRGQRISQIGAITMDQLMLDVSNIPDLQAGEVVTLIGKDQDQEITADEWADKLGTIS 378

Query: 355 YDLL 358
           +++L
Sbjct: 379 WEIL 382


>gi|242278092|ref|YP_002990221.1| alanine racemase [Desulfovibrio salexigens DSM 2638]
 gi|242120986|gb|ACS78682.1| alanine racemase [Desulfovibrio salexigens DSM 2638]
          Length = 374

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 178/376 (47%), Gaps = 37/376 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L +++DL A+++N+  +      +R   VVK +AYG G  ++A AL   G   F V +V 
Sbjct: 8   LEVEVDLNAIRHNYRLLR--DKGSRVYGVVKADAYGHGLIEVARALEEEGADTFAVGTVG 65

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSC-GVSH 122
           EG++LR      RI  L G  P  E+  F+     +IP I    QL   S ++S  G   
Sbjct: 66  EGMQLRKSGCSKRIISLLG--PLNEEDCFNAAQNKIIPFIGEFEQLEMLSAVVSAQGRKV 123

Query: 123 PYALQVDTGFNRLGLSLQEALD--FTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQL 179
             +L+ DTG +RLG S+ E LD        N ++  + L  SHLA +DDP+     S Q 
Sbjct: 124 EISLKFDTGMSRLGFSVNE-LDKLIEWLKINPQICPV-LASSHLATSDDPAYEGYMSAQA 181

Query: 180 ERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSH 230
           E F  ++         +EASLA+S+GIL+    H+   R GI+LYG     GT+      
Sbjct: 182 ETFSGILKRLADAGYELEASLANSAGILVHDQVHYSAQRGGIALYGSNPLLGTEWSESGR 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +     I  +R+   G+ +SYG      RD  +A+   GYADGY   LS      
Sbjct: 242 DLKPAMQVRTNIAAVRELKKGQAISYGCTYTADRDMTVAIVCAGYADGYSRGLSST---- 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                  G+  I G    ILG++ M + + D++    ++ GD   + G +    I  +D+
Sbjct: 298 -------GEVCIHGKRAKILGRVCMQLCIVDVSHIEGVKFGDTAYLLGGEGEGHISAEDL 350

Query: 347 ALASGTTNYDLLVRIG 362
           A    T  Y++   +G
Sbjct: 351 AGWWQTITYEIFCLLG 366


>gi|330501216|ref|YP_004378085.1| alanine racemase [Pseudomonas mendocina NK-01]
 gi|328915502|gb|AEB56333.1| alanine racemase [Pseudomonas mendocina NK-01]
          Length = 357

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 179/364 (49%), Gaps = 31/364 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     LSG AR  AVVK +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLDALRHNYQLARELSG-ARALAVVKADAYGHGAVRCAQAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            + LR     A I +L G     E  + D  +L  V+ +  Q+     +    +S P + 
Sbjct: 63  ALALREAGIGAPILLLEGFFETDELALIDQHDLWCVVHAQWQI---EAIEQAQLSKPLSV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++D+G +R+GL   +       ++ + L  G++S I+  +H A AD+P     + QL 
Sbjct: 120 WLKLDSGMHRVGLHPSD----YQQAYRRLLASGKISKIVLMTHFARADEPECERTAEQLA 175

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVT 237
            F+         E SL +S  +L  P       RPGI LYG T       ++  +  V+T
Sbjct: 176 VFQQAREGLAA-EVSLRNSPAVLGWPQVPSDWVRPGIMLYGATPFEQAQEQAARLLPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+++I +R+  AGE V YG +    R + + V A+GYADGYP         H+P+   G
Sbjct: 235 LESKVISVRELPAGEPVGYGARFVSERPTRVGVVAMGYADGYP--------RHAPT---G 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G    ++G+++MDM   D+TD     +   ++++G  +   DVA+A+G+  Y +
Sbjct: 284 TPVMVDGQPTRLIGRVSMDMLTVDLTDLPQAGLCSRVELWGKQVLASDVAMAAGSIPYQI 343

Query: 358 LVRI 361
              +
Sbjct: 344 FCNL 347


>gi|88810604|ref|ZP_01125861.1| Alanine racemase region [Nitrococcus mobilis Nb-231]
 gi|88792234|gb|EAR23344.1| Alanine racemase region [Nitrococcus mobilis Nb-231]
          Length = 365

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 173/366 (47%), Gaps = 22/366 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               R  +DL AL++N       + +AR  AV+K N YG G  ++A     A    F V+
Sbjct: 2   TRLARATVDLGALRHNLAVARQAAPSARVIAVLKANGYGHGLLQVA--AALAQADAFAVS 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSH 122
            + E  +LRL   + RI +L G     E  +FD   L PVI +  QL   + L    +  
Sbjct: 60  CMAEASRLRLAGYRHRIILLAGYFEPDELPLFDRYALDPVIHAEWQL---APLERSTLQR 116

Query: 123 P--YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           P    L+VDTG +RLG    +  +      +         ++HLA AD+       +QLE
Sbjct: 117 PLDVWLKVDTGMHRLGFPAGQVCEVYQRLRSMPSVASVRFMTHLARADNRRDPTTRMQLE 176

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVTA 238
            F        G E S+A+S+  L     H Q  RPGI LYG +  I+  +S  +  V T 
Sbjct: 177 TFEAACQGLSG-ERSIANSAATLAWRQTHAQWVRPGIMLYGCSPFIDGLESPALWPVQTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           EAR++ +     G+L+ YGG         + V ++GY DGYP         H+PS   G 
Sbjct: 236 EARLVAVNYHRRGDLIGYGGIYACPEAMPVGVVSVGYGDGYP--------RHAPS---GT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G  V ++G+++MDM   D+  + + +VGD + ++G  + +  VA   GT  Y+LL
Sbjct: 285 PLLVAGREVSLVGRVSMDMLSVDLRSAPNAQVGDLVVLWGESLPVGRVAEQCGTIAYELL 344

Query: 359 VRIGTR 364
            ++ +R
Sbjct: 345 CKLTSR 350


>gi|253996549|ref|YP_003048613.1| alanine racemase [Methylotenera mobilis JLW8]
 gi|253983228|gb|ACT48086.1| alanine racemase [Methylotenera mobilis JLW8]
          Length = 361

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 176/366 (48%), Gaps = 31/366 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L AL++N   ++  + +++  AVVK N YG G   +A  L  A    F V  + E + 
Sbjct: 8   VSLNALRHNLSVVHKFAPHSKIMAVVKANGYGHGLINVAHGLSAA--DGFAVLGINEAMD 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    Q  I +L G+   QE  +  +  L  VI S PQL      +     H + L+++
Sbjct: 66  LRDAGFQQTILLLEGVFCAQELNVASNLGLNVVIHSQPQLEMLESAVLNKPMHVH-LKMN 124

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQL--------SLIISHLACADDPSSHVNSVQLER 181
           +G NRLG        F   +FN+   +L          +++H A ADD +       L  
Sbjct: 125 SGMNRLG--------FQPEAFNRAYERLLACENVADITLMTHFATADDETGIEQPYNL-- 174

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           F+T  +    +  SLA+S+ IL  P  H    RPGI LYG +   D    ++ +   +  
Sbjct: 175 FKT-TTQGLNLPVSLANSATILRHPKAHADWVRPGIMLYGASPVGDTAAATYGLMPAMQF 233

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II +++  AGE V YG +   TR + I + A GYADGYP   +GL S  S     G 
Sbjct: 234 TSEIIGVQEVKAGETVGYGNRFTATRSTRIGIVACGYADGYPRH-AGLVSGQSS----GA 288

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +   LG+++MDM   D+TD  +  +G  ++++G  + +D VA AS T  Y+LL
Sbjct: 289 PIAVAGQLTNTLGRVSMDMLFCDLTDIPNANIGSPVELWGKQVPVDAVAAASDTVGYELL 348

Query: 359 VRIGTR 364
             +  R
Sbjct: 349 CAVAPR 354


>gi|271501945|ref|YP_003334971.1| alanine racemase [Dickeya dadantii Ech586]
 gi|270345500|gb|ACZ78265.1| alanine racemase [Dickeya dadantii Ech586]
          Length = 358

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 177/361 (49%), Gaps = 24/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  A+VK NAYG G  + A A  +A    + V+ + E + 
Sbjct: 8   IDRQALRHNLQRIRQMAPQSRLIAIVKANAYGHGALEAARAFSDA--DGYGVSRLSEALV 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     E  ++ +  L   + S  QL   + L    + HP    ++
Sbjct: 66  LRAAGITKPILLLEGFFDADELPLLAEHQLETAVHSEEQL---AALEQARLPHPLTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A  F     N   + Q   I+SH   AD+P       QL+ F   +
Sbjct: 123 LDTGMHRLGVLPEHADAFYTRLCNCTNVVQPVNIMSHFCRADEPEVDTTQRQLDCFDAFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI  YG +           ++  +T  +++I
Sbjct: 183 QGKPGRQ-SIAASGGILLWPQAHRDQIRPGIIQYGISPLAQGDASQWQLKPAMTLTSQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG      RD+ + V AIGY DGYP      D+++   V++ G+    
Sbjct: 242 AVREHHAGEPVGYGSNWVSPRDTRLGVVAIGYGDGYPR-----DAKNGTPVWVNGR---- 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              VP+ G+++MDM   D+      +VGD + ++G  + +++VA  +G + Y+L+ R+  
Sbjct: 293 --EVPLSGRVSMDMLTVDLGPDAQDKVGDEVILWGGPLPVENVAAYNGISAYELITRLTA 350

Query: 364 R 364
           R
Sbjct: 351 R 351


>gi|77163759|ref|YP_342284.1| alanine racemase region [Nitrosococcus oceani ATCC 19707]
 gi|254435880|ref|ZP_05049387.1| alanine racemase [Nitrosococcus oceani AFC27]
 gi|123595159|sp|Q3JEJ2|ALR_NITOC RecName: Full=Alanine racemase
 gi|76882073|gb|ABA56754.1| alanine racemase [Nitrosococcus oceani ATCC 19707]
 gi|207088991|gb|EDZ66263.1| alanine racemase [Nitrosococcus oceani AFC27]
          Length = 356

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 178/367 (48%), Gaps = 21/367 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F +  ID +AL++N   +  L+  ++  AVVK + YG G  ++A  L  A    F V  +
Sbjct: 3   FPQAIIDASALRHNLQRVRELAPRSQIMAVVKADGYGHGLTRVADVLVAA--DAFAVARL 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE   LR    +  + +L GI   ++ ++     L  V+    QL    ++       P 
Sbjct: 61  EEATALRQAGHRCPVVLLGGISDKEQLQLAAAHRLTLVVHEFAQLDLLERVRITS-PLPV 119

Query: 125 ALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            ++ DTG +RLG   Q  A           +  +  ++SHLA AD+    +  +QL+ F 
Sbjct: 120 WVKADTGMHRLGFPPQVVAKAIARLRCCPAVASVVGLMSHLASADESEDFLTPIQLQTFE 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEA 240
            + +   G+  S+A+S+ +++ P  HF   RPG+ LYG +   + +     +++V+T + 
Sbjct: 180 GIAA--PGLLRSMANSAAVMVYPYAHFDWVRPGLMLYGASPFAHGTGAAVGLKSVMTLQT 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I I     G+ + YG          + VAA+GY DGYP         H+ S   G   
Sbjct: 238 RLIAIHHLRPGDSIGYGATWVCPEAMTVGVAALGYGDGYP--------RHAVS---GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  VP++G+++MDM   D+      +VGD +  +GP++ +++VA  + T  Y+LL +
Sbjct: 287 LVNGRPVPLVGRVSMDMITLDLRTQPKAKVGDPVIAWGPNLPVEEVARHATTIPYELLCQ 346

Query: 361 IGTRYAK 367
           +  R  +
Sbjct: 347 VTGRVPR 353


>gi|119943978|ref|YP_941658.1| alanine racemase [Psychromonas ingrahamii 37]
 gi|119862582|gb|ABM02059.1| alanine racemase [Psychromonas ingrahamii 37]
          Length = 358

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 184/371 (49%), Gaps = 26/371 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  I+L AL++N+  +   +  ++  AV+K NAYG G  K+A  L +  V  F V  + 
Sbjct: 4   IRAVINLKALQHNFQVLQKTAPQSQIIAVIKANAYGHGMVKVAQKLQH--VHAFAVARLS 61

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E + LR    +  I +L G    G    +   +L  V+ S  Q+   + +M   + +P  
Sbjct: 62  EALILRSAGIKHPIILLGGFFKDGDLATLSAADLQCVVHSQEQV---AAIMQAKLPNPLK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLER 181
             L++DTG +RLG    E  D  +      +     I  ++H   A++ +++  + QL  
Sbjct: 119 IWLKLDTGMHRLGFH-PEQFDAVYKRLEGSINVQKPINFLTHFHSAEEVNNNATAQQLSL 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           F+  I    G++ SLA+S+ +   P  HF   RPGI+LYG +   D++ K   ++ V+T 
Sbjct: 178 FKQYIQAGSGLK-SLANSAAVFAWPETHFDAVRPGIALYGISPFADRLAKDLQLRPVMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I IR   A E V YG       D+ + V A+GY DGYP     L  E +P      
Sbjct: 237 KSSLIAIRDHKARESVGYGAHWTAQNDTQLGVVAMGYGDGYPR----LAPEGTPV----- 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +VPI+G+I+MDM   D+      +VGD + ++G  +  + VA   GT  Y+L+
Sbjct: 288 --LVNGRIVPIVGRISMDMLTIDLGLMNQDKVGDDVTLWGEGLPAEIVAQKIGTIAYELV 345

Query: 359 VRIGTRYAKFY 369
            ++ +R    Y
Sbjct: 346 TKLTSRVTLHY 356


>gi|126665189|ref|ZP_01736172.1| alanine racemase [Marinobacter sp. ELB17]
 gi|126630559|gb|EBA01174.1| alanine racemase [Marinobacter sp. ELB17]
          Length = 359

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 177/369 (47%), Gaps = 27/369 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N+      SG +   AV+K + YG G   +A     A V  F V  +EE + 
Sbjct: 9   IDSKALQHNYQVACQRSGQSSAMAVIKADGYGHGIAGVA-GALAAVVPKFAVACIEEAIA 67

Query: 71  LR-LYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           +R     Q  + +L G+H  Q+     + N  PV+    QL +   L+    +    L+V
Sbjct: 68  IRNAGVGQQPVALLQGVHSEQDLATCIEHNFEPVLHCDDQLQW---LVQAPAAPRIWLKV 124

Query: 129 DTGFNRLGLSLQEALD----FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +TG NRLG   +E         H+    K+      ++H ACADD  S +   Q ERF  
Sbjct: 125 NTGMNRLGFHAEELAQVMATLAHHQLTPKV---IGFVTHFACADDKRSTMTQQQTERFEK 181

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEAR 241
             + +  ++ S+A+S+ +       F  +RPGI LYG +  +  S     +++V+T +A 
Sbjct: 182 ATAPWPELQLSVANSAALFRPGQKLFGWSRPGIMLYGASPIVGTSAAELGLKSVMTLQAP 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I  R    G+ V YG      + + + + A+GY DGYP         H+ +   G    
Sbjct: 242 LISTRLLQPGDTVGYGADWVACKPTRMGIVALGYGDGYP--------RHAGT---GTPAA 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  + ++G+++MDM   D++ + +   GD ++++G  + +DDVA  +GT  Y+LL  +
Sbjct: 291 IHGQRIQLIGRVSMDMLAVDLSAAPAARNGDPVELWGATVPVDDVAGHAGTIGYELLTGV 350

Query: 362 GTRYAKFYT 370
             R  + + 
Sbjct: 351 TARVPRRWC 359


>gi|227326007|ref|ZP_03830031.1| alanine racemase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 360

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 173/363 (47%), Gaps = 18/363 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A    +A    + V  + E + 
Sbjct: 8   INRRALRHNLQRIRQLAPGSQVVAVVKANAYGHGMIEAAHTFCDADC--YGVARLSEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           LR       I +L G     +  +   + +      P+     +  +     P  +++D+
Sbjct: 66  LRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHCPEQLAALEQATLPQPIPVWMKLDS 125

Query: 131 GFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           G +RLG+  + A  F    +  + + Q   I+SH   AD+P +     QL  F       
Sbjct: 126 GMHRLGVLPEHADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQLACFDAFTQGK 185

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARIILIR 246
            G + S+A+S GILL P  H    RPGI LYG +  D  + +H   Q  +T  + +I +R
Sbjct: 186 PGAQ-SIAASGGILLWPQSHRDRVRPGIILYGVSPLDNEDAAHFGFQPAMTFTSHLIAVR 244

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +  +GE V YGG     R++ + V A+GY DGYP          +P+   G    + G  
Sbjct: 245 EHNSGEAVGYGGTWTSPRNTRLGVVAVGYGDGYPRC--------APA---GTPVLVNGRE 293

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           VP+ G+++MDM   D+      +VGD + ++GP + ++ +A  +G + Y+L+ R+  R A
Sbjct: 294 VPLSGRVSMDMITVDLGPDAQDKVGDEVILWGPTLPVERIAAHTGASAYELITRLTQRTA 353

Query: 367 KFY 369
             Y
Sbjct: 354 LEY 356


>gi|218886445|ref|YP_002435766.1| alanine racemase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|254802361|sp|B8DRL1|ALR_DESVM RecName: Full=Alanine racemase
 gi|218757399|gb|ACL08298.1| alanine racemase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 372

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 177/371 (47%), Gaps = 33/371 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++ L AL+ N+ ++  +S  A    V+K +AYG G   +A  L  AG   F   +V E 
Sbjct: 10  VRVRLGALRRNFETLRRMSPAAMP--VIKSDAYGHGLLPVARTLEAAGADAFAAGTVGEC 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            +LR      RI  L G     + +     +++P + S  QL   +   + G     AL+
Sbjct: 68  AQLRDGGIPGRIVALLGATDAADAECCVARSIVPAVYSADQLEMLAGRAAPGQQVDIALK 127

Query: 128 VDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
            DTG  RLG S   L   LD  H    + + +  L++SHLA +DDPS S     Q E F 
Sbjct: 128 FDTGMARLGFSEADLPALLDRLHA---RPMLRPVLVMSHLAVSDDPSRSDFTRQQGEAFG 184

Query: 184 TLIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQT 234
            +++     +   + SLA+S+ +L  P  HF + RPGI+LYG     GT + +    +Q 
Sbjct: 185 RILAGVRADWPAAQGSLANSAALLAHPELHFDVQRPGIALYGANPLRGTAQEHLGDGLQP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   A I+ +    AG  +SYG      RD  +A+ A GYAD Y   LSG         
Sbjct: 245 AMDVAAPILQVHPLPAGRSISYGRTFTAPRDMTVAIVATGYADAYSRGLSG--------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKL--DDVALASG 351
              G   + G  VPILG++ M MT  D+TD   +  GD   +  GP   L  D++A   G
Sbjct: 296 --KGAMTVHGRRVPILGRVCMQMTAVDVTDVPGVAAGDDAYLLGGPGEALTPDELADLWG 353

Query: 352 TTNYDLLVRIG 362
           T +Y++L  +G
Sbjct: 354 TISYEVLCLLG 364


>gi|88800247|ref|ZP_01115814.1| alanine racemase [Reinekea sp. MED297]
 gi|88776962|gb|EAR08170.1| alanine racemase [Reinekea sp. MED297]
          Length = 358

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 189/374 (50%), Gaps = 34/374 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  I  +AL +N   +   +  A   AV+K NAYG G +  A AL  A    F V+S++E
Sbjct: 6   RALISRSALTHNLGRVRHYAPQANIWAVIKANAYGHGADVAAEALSAA--DGFAVSSLDE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
            + LR       I +L G+   Q     +   + +   V   T   ++ +  +  P +  
Sbjct: 64  AIALRDSGVSHPILLLSGV--TQADHWAEAAALGLHCVVHSRTQVEQIRTQTLPSPLSVW 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPS-SHVNSVQLERF 182
           L++D+G +RLGL+  E +    ++ ++ +  +S+I  ++H+A AD P   +    Q E F
Sbjct: 122 LKIDSGMHRLGLT-PENVPAAFSALSQ-VSNVSVIGALTHMASADVPERDNATRQQFEVF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAE 239
           +   +    ++ S+ +S+ IL   +      RPGI LYG T     S   + +Q V+  E
Sbjct: 180 QA--ASPATLQTSVGNSATILRHADCVGDWVRPGIMLYGATPTTEASAADYGLQPVMAFE 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS---VFL 296
           A +I +R   AGE V YG + + +R + IA  A GY DGYP         H+P    V+L
Sbjct: 238 APVIAVRDIAAGESVGYGHRWQASRPARIATLAAGYGDGYP--------RHAPDGTPVWL 289

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           GG+       VPI G+++MD+   D++  S  ++VGD  Q++GP++ +DDVA   GT  Y
Sbjct: 290 GGQ------RVPIAGRVSMDLITVDVSLLSEEVKVGDMAQLWGPELPVDDVAEHIGTIGY 343

Query: 356 DLLVRIGTRYAKFY 369
           +LL R+  R  K +
Sbjct: 344 ELLTRLSLRVPKVF 357


>gi|330890950|gb|EGH23611.1| alanine racemase [Pseudomonas syringae pv. mori str. 301020]
          Length = 357

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 186/376 (49%), Gaps = 38/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  A +K +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RAFIDLQALRHNYQLAREHSGG-KALAGIKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + N   V+ S  QL     +    ++ P   
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELALIVEHNFWTVVHSTWQL---EAIEQAQLAKPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++DTG +R+GL   E       ++ + L  G+++ I+  SH A AD+ +S  +    E
Sbjct: 120 WLKIDTGMHRVGLYPHE----YQAAYQRLLVTGKVARIVLMSHFARADELNSGCSD---E 172

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QT 234
           +F    S  KG+  E SL +S  +L  P+     +RPGI LYG T    + HP+    Q 
Sbjct: 173 QFAVFESFRKGLAAEISLKNSPAVLGWPHIPSDWSRPGIMLYGAT-PFGQPHPLADRLQP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T E++II +R+  AGE V YG      R   I V A+GYADGYP         H+P+ 
Sbjct: 232 VMTLESKIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYP--------RHAPT- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  
Sbjct: 283 --GTPVQIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIP 340

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++   +  R  + Y+
Sbjct: 341 YEIFCNL-RRVPRIYS 355


>gi|322633763|gb|EFY30503.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
          Length = 341

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 176/357 (49%), Gaps = 34/357 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGT 338


>gi|15600495|ref|NP_253989.1| alanine racemase [Pseudomonas aeruginosa PAO1]
 gi|20137486|sp|Q9HTQ2|ALR2_PSEAE RecName: Full=Alanine racemase, catabolic
 gi|9951618|gb|AAG08687.1|AE004943_3 catabolic alanine racemase [Pseudomonas aeruginosa PAO1]
          Length = 357

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 178/372 (47%), Gaps = 30/372 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--Y 124
           G++LR    +  I +L G     E ++I   +   V+    QL    +     ++ P   
Sbjct: 63  GLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIER---ASLARPLNV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLERF 182
            L++D+G +R+G    E     H       G+++ I+  SH + AD+        QL  F
Sbjct: 120 WLKMDSGMHRVGF-FPEDFSAAHERLRAS-GKVAKIVMMSHFSRADELDCPRTEEQLAAF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTA 238
                  +G E SL +S  +L  P       RPGI LYG T    ++HP+    + V+T 
Sbjct: 178 AAASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGAT-PFERAHPLADRLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+++I +R   AGE V YG +    R   I V A+GYADGYP         H+     G 
Sbjct: 236 ESKVISVRDLPAGEPVGYGARYSTERSQRIGVVAMGYADGYP--------RHAAD---GT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL
Sbjct: 285 LVFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLL 344

Query: 359 VRIGTRYAKFYT 370
             +  R  + Y+
Sbjct: 345 CNL-KRVPRVYS 355


>gi|300869471|ref|ZP_07114054.1| Alanine racemase [Oscillatoria sp. PCC 6506]
 gi|300332528|emb|CBN59252.1| Alanine racemase [Oscillatoria sp. PCC 6506]
          Length = 408

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 181/383 (47%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL AL +N   +  LS + +TA   VVK +AYG G   +A     AG     V ++ 
Sbjct: 34  VEIDLAALAHNVRQLK-LSLSPKTALMTVVKADAYGHGAVTVAQTALEAGASWLGVATIP 92

Query: 67  EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           EG++LR     A I +L   H P Q + I    L P I +  Q   +S+++ +   S   
Sbjct: 93  EGIELRDRGINAPILILGATHTPEQVEAIAHWQLQPTICTPKQALVFSEVLGTLNKSLSV 152

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +RLG   Q+A +F          +L+ I SHLA AD P   V   Q +RF  
Sbjct: 153 HVKLDTGMSRLGSPWQQAAEFVQLVARSPNLELASIYSHLATADSPDFTVMKQQQQRFEG 212

Query: 185 LISHYKGIEAS-------------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            I++ + I+ S             LA+S+  L   + H+ + R G++ YG      +   
Sbjct: 213 AIANCE-IQNSELFLNPKSSPRLHLANSAAALADKSLHYDMVRVGLATYGLYPAPHLQSV 271

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+  +A++  ++   AG  VSYG +    R+  +AV  IGYADG P  LS     
Sbjct: 272 IDLKPVMQVKAKVTQVKTIAAGTGVSYGYKFIADREMRLAVIGIGYADGIPRNLSN---- 327

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                    K  ++G  V  +G ITMD  M D+T    +EVG+ + + G D    I  DD
Sbjct: 328 -------KMKVLVRGQWVSQVGAITMDQIMLDVTSIPDLEVGEVVTLLGKDGENKISADD 380

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
            A   GT ++++L     R  + 
Sbjct: 381 WAAELGTISWEILCSFKHRLPRI 403


>gi|226952672|ref|ZP_03823136.1| alanine racemase 1 [Acinetobacter sp. ATCC 27244]
 gi|226836578|gb|EEH68961.1| alanine racemase 1 [Acinetobacter sp. ATCC 27244]
          Length = 356

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 179/361 (49%), Gaps = 25/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID TAL+ N + +  L+ N++  ++VK NAYG G +    AL  A    F V  +EE ++
Sbjct: 8   IDSTALQYNLNRVKQLAPNSKIVSMVKANAYGHGIKDCLTAL--AATDAFGVACLEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQ 127
           +R       I ++ G+    E I + +  L  V+    Q+ +    K     +     ++
Sbjct: 66  IRRLGYLQPITLIEGVFSADEMIHVIEQKLECVVHHAQQVEWLLAHKDQYQALDLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTLI 186
           +++G NRLG  + E          K  G   ++  H A AD  + H +N  Q  +F  + 
Sbjct: 126 LNSGMNRLGFKVSEITTVIQRL--KAEGFNCVLTMHFANAD--TDHPLNEQQKMQFLQVK 181

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
              + I AS  +S+ I   P  HF   RPGI LYG +   DK  ++  ++ V+T  A II
Sbjct: 182 QACEPILASCCNSAAIYRYPELHFDFVRPGIMLYGASPFADKNVEALDLKPVMTFSAEII 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            + +   GE V YG     T+D  IA+ +IGY DGYP         +    F+     I 
Sbjct: 242 ALNQIQQGEYVGYGSTYVATQDMTIAIVSIGYGDGYP-------RAYIKPNFVA----IY 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             ++P++G+++MDM   DI++ L+ ++G  ++++G    +DDVA A+GT  Y+LL R+  
Sbjct: 291 DQLIPVIGRVSMDMIAIDISN-LNAKIGTKVELWGNTRLVDDVAEANGTIGYELLCRLSQ 349

Query: 364 R 364
           R
Sbjct: 350 R 350


>gi|168185661|ref|ZP_02620296.1| alanine racemase [Clostridium botulinum C str. Eklund]
 gi|169296525|gb|EDS78658.1| alanine racemase [Clostridium botulinum C str. Eklund]
          Length = 387

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 42/383 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L +N   +  LS       +VK +AYG G   I P L   G     V  V EGV
Sbjct: 11  EINLDNLASNMKEIKKLSNTKEIIGIVKADAYGHGALDIVPTLIENGATGLAVAVVSEGV 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--HPYA-- 125
           +LR    +  I VL    P    ++   ++   + S+     Y+K +S      H  A  
Sbjct: 71  ELRRGGIECPIMVLGFTPPSLIDMLLKHDIEQTVFSLD----YAKELSKAAEKMHKIAKI 126

Query: 126 -LQVDTGFNRLG-LSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + VDTG  R+G L  +E++ D    S    + ++  I SH + AD+ +   +S QL +F
Sbjct: 127 HIAVDTGMGRIGFLPNEESIQDVKKISMLPNI-KIKGIFSHFSTADEENKEYSSYQLNQF 185

Query: 183 RTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-P 231
                 Y+G++          +++S+ I+  P   F+  RPGI LYG   +++++KS   
Sbjct: 186 NKF---YEGLKKENVNIETRHISNSAAIMDLPETKFEGVRPGIILYGYYPSNEVDKSKLK 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  +  I+ I+K  +GE +SYG + K  R+S IA   +GYADGY   L G      
Sbjct: 243 LKPVMQLKTNIVHIKKIPSGEYISYGRKFKTDRESFIATLPVGYADGYTRLLFG------ 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYI----QIFGPDIKLDDV 346
                  K  I G + P++G+I MD  M DITD    I+VG+ +    Q  G  I  DD+
Sbjct: 297 -----KAKVIINGQLAPVVGRICMDQCMVDITDIKGDIKVGEEVILIGQKNGIKIDADDI 351

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A   GT NY+++  I  R  + Y
Sbjct: 352 AEMLGTINYEIICMISKRVPRVY 374


>gi|83651967|gb|ABC36031.1| alanine racemase [Burkholderia thailandensis E264]
          Length = 386

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 176/363 (48%), Gaps = 29/363 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + N+R  +VVK NAYG G E++ PAL +A      +  ++E V
Sbjct: 20  RIHPDAIAHNLAIVRQKAPNSRVWSVVKANAYGHGIERVYPALADA--DGIALLDLDEAV 77

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ- 127
           ++R       + +L GI    +  I D + + V +    QL     L S   + P  +Q 
Sbjct: 78  RVRALGWTKPVLLLEGIFDAADIEIADRHRLTVAVHGDEQLKL---LTSAKTTRPIDIQL 134

Query: 128 -VDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +++G NRLG       D +   +    +G+++L++ H A ADD        Q+  F   
Sbjct: 135 KMNSGMNRLGYRPSAFRDAWERAAAAPSIGRIALMM-HFANADDGEI---DWQMSVFDAA 190

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEAR 241
                G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +R
Sbjct: 191 TDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTLTSR 249

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++    GE V YG +    R+  I V A GYADGYP         H+PS   G    
Sbjct: 250 IIGVQTLSPGETVGYGRRFAAEREMRIGVVACGYADGYP--------RHAPS---GTPIA 298

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +  ++G+++MDM   D+T      VG  ++++G  +++DDVA A+GT  Y+L+  +
Sbjct: 299 VDGVLTRVVGRVSMDMLTVDLTPCPHAGVGSTVELWGKQVRVDDVAEAAGTIGYELMCAL 358

Query: 362 GTR 364
             R
Sbjct: 359 ARR 361


>gi|161723116|ref|YP_439909.2| alanine racemase [Burkholderia thailandensis E264]
 gi|167616568|ref|ZP_02385199.1| alanine racemase [Burkholderia thailandensis Bt4]
 gi|257143071|ref|ZP_05591333.1| alanine racemase [Burkholderia thailandensis E264]
          Length = 374

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 176/363 (48%), Gaps = 29/363 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + N+R  +VVK NAYG G E++ PAL +A      +  ++E V
Sbjct: 8   RIHPDAIAHNLAIVRQKAPNSRVWSVVKANAYGHGIERVYPALADA--DGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ- 127
           ++R       + +L GI    +  I D + + V +    QL     L S   + P  +Q 
Sbjct: 66  RVRALGWTKPVLLLEGIFDAADIEIADRHRLTVAVHGDEQLKL---LTSAKTTRPIDIQL 122

Query: 128 -VDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +++G NRLG       D +   +    +G+++L++ H A ADD        Q+  F   
Sbjct: 123 KMNSGMNRLGYRPSAFRDAWERAAAAPSIGRIALMM-HFANADDGEI---DWQMSVFDAA 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEAR 241
                G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +R
Sbjct: 179 TDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTLTSR 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++    GE V YG +    R+  I V A GYADGYP         H+PS   G    
Sbjct: 238 IIGVQTLSPGETVGYGRRFAAEREMRIGVVACGYADGYP--------RHAPS---GTPIA 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +  ++G+++MDM   D+T      VG  ++++G  +++DDVA A+GT  Y+L+  +
Sbjct: 287 VDGVLTRVVGRVSMDMLTVDLTPCPHAGVGSTVELWGKQVRVDDVAEAAGTIGYELMCAL 346

Query: 362 GTR 364
             R
Sbjct: 347 ARR 349


>gi|78058366|gb|ABB17545.1| VanTG2 [Enterococcus faecalis]
          Length = 712

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 182/375 (48%), Gaps = 35/375 (9%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL  L++N   +  A+       AVVK  AYG G  +IA  L   GV+ F V +++E
Sbjct: 347 LEIDLNNLEHNVKVLKRAMPQKCELMAVVKAEAYGHGLYEIATHLNKIGVKAFAVATIDE 406

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+KLR Y     I +L    P + K +   +L   +          K     ++H   ++
Sbjct: 407 GIKLRQYGVLGEILILGYTAPARAKELRKYDLTQTLIDYKYALLLDKQGYDVMTH---IK 463

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERFRT 184
           VDTG +RLG   ++ ++     F+ K  ++S I +HL  AD   +      +VQ+E F  
Sbjct: 464 VDTGMHRLGFDAKD-IEKISAVFSMKHIKVSGIYTHLCAADSVDEKDIFFTNVQIESFYN 522

Query: 185 LISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
           L++  K  GI   +  + SS G+L  P       R G+SLYG      D+      ++ V
Sbjct: 523 LLNQLKEKGITIPKIHIQSSYGLLNYPELKCDYVRVGVSLYGVLSSPNDRTKLHLDLRPV 582

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++R+IL+R+   GE V Y       RDSLIA+  +GYADGYP  LS           
Sbjct: 583 LSLKSRVILLREIKKGESVGYSRSFVANRDSLIALLPVGYADGYPRNLS----------- 631

Query: 296 LGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
             GK +  I G+  P++GKI MD    D+TD  +++ G    + G D    I    VA +
Sbjct: 632 -CGKSYVLINGHQAPVVGKICMDQLAVDVTDIPNVKTGSIATLIGKDGKEEITAPMVAES 690

Query: 350 SGTTNYDLLVRIGTR 364
           + +   +LL R+G R
Sbjct: 691 AESITNELLSRMGHR 705


>gi|107104405|ref|ZP_01368323.1| hypothetical protein PaerPA_01005481 [Pseudomonas aeruginosa PACS2]
 gi|116053449|ref|YP_793776.1| alanine racemase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254238003|ref|ZP_04931326.1| catabolic alanine racemase [Pseudomonas aeruginosa C3719]
 gi|296392161|ref|ZP_06881636.1| alanine racemase [Pseudomonas aeruginosa PAb1]
 gi|313106726|ref|ZP_07792943.1| catabolic alanine racemase [Pseudomonas aeruginosa 39016]
 gi|115588670|gb|ABJ14685.1| catabolic alanine racemase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169934|gb|EAZ55445.1| catabolic alanine racemase [Pseudomonas aeruginosa C3719]
 gi|310879445|gb|EFQ38039.1| catabolic alanine racemase [Pseudomonas aeruginosa 39016]
          Length = 357

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 178/372 (47%), Gaps = 30/372 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--Y 124
           G++LR    +  I +L G     E ++I   +   V+    QL    +     ++ P   
Sbjct: 63  GLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIER---ASLARPLNV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLERF 182
            L++D+G +R+G    E     H       G+++ I+  SH + AD+        QL  F
Sbjct: 120 WLKMDSGMHRVGF-FPEDFRAAHERLRAS-GKVAKIVMMSHFSRADELDCPRTEEQLAAF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTA 238
                  +G E SL +S  +L  P       RPGI LYG T    ++HP+    + V+T 
Sbjct: 178 AAASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGAT-PFERAHPLADRLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+++I +R   AGE V YG +    R   I V A+GYADGYP         H+     G 
Sbjct: 236 ESKVISVRDLPAGEPVGYGARYSTERSQRIGVVAMGYADGYP--------RHAAD---GT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL
Sbjct: 285 LVFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLL 344

Query: 359 VRIGTRYAKFYT 370
             +  R  + Y+
Sbjct: 345 CNL-KRVPRVYS 355


>gi|78485703|ref|YP_391628.1| alanine racemase [Thiomicrospira crunogena XCL-2]
 gi|78363989|gb|ABB41954.1| alanine racemase [Thiomicrospira crunogena XCL-2]
          Length = 356

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 173/370 (46%), Gaps = 38/370 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L AL+ N   +   + +++  A++K N YG G E++A  L  A    + V  ++E + 
Sbjct: 10  IHLNALQQNLRQVKTFAPDSKVLAIIKSNGYGHGIERVAGQLAQA--DGYGVACIDEAIV 67

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQ 127
           LR       I +L G+    E  I     L   + S  QL +   L +  +  P    L+
Sbjct: 68  LRQKGFLHPIVLLEGLFSEVELAIAIQHRLEFAVHSFLQLEW---LKNSSIKTPLNIWLK 124

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVNSVQL 179
           +DTG +RLG        F  +   K + +L  +        +SH A AD+  S     QL
Sbjct: 125 LDTGMHRLG--------FQAHEIQKVIAELKALSAPVNIHLMSHFASADESESFTRQ-QL 175

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           + F  +    K    S+A+S+ +   P  H    RPGI LYG          ++ V+T  
Sbjct: 176 QVFNQVAETLK-CPRSIANSAAVQWFPESHLDWVRPGIMLYGACATSETVPGLKPVMTLM 234

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++    GE V YG   +  R SLIAV AIGY DGYP         H+PS   G  
Sbjct: 235 SEIISLKWIETGETVGYGQTWQAPRRSLIAVVAIGYGDGYP--------RHAPS---GTP 283

Query: 300 GFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             I+G  +P++G+++MDM   D+T+ +  + +GD   ++G  + +D +A A GT  Y+LL
Sbjct: 284 VLIQGKKMPLVGRVSMDMITVDVTELADKVAIGDEAVLWGQGLPVDVIANACGTIGYELL 343

Query: 359 VRIGTRYAKF 368
             +  R  + 
Sbjct: 344 CGVTQRVPRI 353


>gi|123969267|ref|YP_001010125.1| alanine racemase [Prochlorococcus marinus str. AS9601]
 gi|123199377|gb|ABM71018.1| putative Alanine racemase [Prochlorococcus marinus str. AS9601]
          Length = 399

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 184/377 (48%), Gaps = 41/377 (10%)

Query: 15  ALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL+ N  ++ + LS N +  AVVK + YG   + ++      G     V +++EGVKLR 
Sbjct: 36  ALETNVRNLRSKLSKNCQFMAVVKADGYGHDAKVVSEYAIRGGASQLGVATLKEGVKLRS 95

Query: 74  YTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTG 131
           +  +  I +L  ++  ++ II F  +L+P ISS+ +    + +    G+     L+VDTG
Sbjct: 96  FGVKKPILILGNLYTKRDLIISFKNDLMPTISSIRECLICNNIGKQFGLKFSLHLKVDTG 155

Query: 132 FNRLGLSLQEALDFTHN-----SFNKKLGQLSLIISHLACAD-----DPSSHVNSVQLER 181
            +RLG    E   F  N     SF   L  +  I SHL+ AD     DP S +  +Q  +
Sbjct: 156 MSRLGF---EYSRFIQNFEKIKSFENIL--IEGIYSHLSSADEDNALDPKS-ITQLQRLK 209

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQT 234
           F  L+          I+  LA+S+ +LL  ++HF + R G+S+YG +   KI+K+  ++ 
Sbjct: 210 FNELLKQINLDRNNEIKIHLANSAAMLLNKDFHFNMVRVGLSMYGYSPLTKIDKNLSLEP 269

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + ++  IR    G  VSYGG+    R + +AV +IGYADG P  LSG         
Sbjct: 270 ALFLKVKVAFIRTIEPGVNVSYGGKFVSCRKTKLAVLSIGYADGVPRNLSG--------- 320

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K   K  + P +G ITMD  M DIT S  I+VG  + + G D    I   D A  S
Sbjct: 321 --KIKVIYKNKLYPQVGSITMDQMMVDITGSNEIKVGSTMILLGSDGDKTITPIDWAKES 378

Query: 351 GTTNYDLLVRIGTRYAK 367
            T  +++L     R  +
Sbjct: 379 DTIPWEILCSFKNRLPR 395


>gi|113953241|ref|YP_729636.1| alanine racemase [Synechococcus sp. CC9311]
 gi|113880592|gb|ABI45550.1| alanine racemase [Synechococcus sp. CC9311]
          Length = 393

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 172/346 (49%), Gaps = 28/346 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++  +A++ N  S+   L  +    AVVK + YG G E +A A    G   F V +++E
Sbjct: 28  LEVSDSAIEANARSLKRHLGPHCDLMAVVKADGYGHGAETVAKASVRGGATSFGVATLQE 87

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           G+ LR       + VL  +  P   +      L+P +SS+ +      L  S G   P  
Sbjct: 88  GIDLRNAGLDQPVLVLGHLSQPDDLRACLQWRLMPTLSSMREALLCQNLADSSGRRFPVQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADD----PSSHVNSVQL 179
           L+VDTG  RLG   ++     H    ++L QLSL  I SHLA AD     P++ V  +Q 
Sbjct: 148 LKVDTGMTRLGCDWKDGKRLAHAI--QQLDQLSLSGIYSHLALADGERDGPAAQVTKLQE 205

Query: 180 ERFRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTV 235
           +RF ++    +   ++  LA+S+G L     H  L R G++LYG   ++ ++    ++  
Sbjct: 206 DRFESITRELRSPTLKRHLANSAGTLRDTGLHHDLVRVGLALYGHCPSEHLDGILNLEPA 265

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSV 294
           ++ +A++ LIR+  AG  VSYG +    R S +AV +IGYADG    LSG + + H+   
Sbjct: 266 MSVKAKVSLIREVPAGVGVSYGHRFVTQRPSRLAVVSIGYADGVSRCLSGRIHALHA--- 322

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                    G  +P +G ITMD  + D T+   +E GD + + G D
Sbjct: 323 ---------GQTLPQVGAITMDQLILDATEHRGLESGDVVTLLGRD 359


>gi|218894405|ref|YP_002443275.1| alanine racemase [Pseudomonas aeruginosa LESB58]
 gi|218774634|emb|CAW30451.1| catabolic alanine racemase [Pseudomonas aeruginosa LESB58]
          Length = 357

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 178/372 (47%), Gaps = 30/372 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--Y 124
           G++LR    +  I +L G     E ++I   +   V+    QL    +     ++ P   
Sbjct: 63  GLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIER---ASLARPLNV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLERF 182
            L++D+G +R+G    E     H       G+++ I+  SH + AD+        QL  F
Sbjct: 120 WLKMDSGMHRVGF-FPEDFRAAHERLRAS-GKVAKIVMMSHFSRADELDCPRTEEQLAAF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTA 238
                  +G E SL +S  +L  P       RPGI LYG T    ++HP+    + V+T 
Sbjct: 178 AAASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGAT-PFERAHPLADRLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+++I +R   AGE V YG +    R   I V A+GYADGYP         H+     G 
Sbjct: 236 ESKVISVRDLPAGEPVGYGARYSTERSQRIGVVAMGYADGYP--------RHAAD---GT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL
Sbjct: 285 LVFIDGNPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLL 344

Query: 359 VRIGTRYAKFYT 370
             +  R  + Y+
Sbjct: 345 CNL-KRVPRVYS 355


>gi|5690425|gb|AAD47081.1|AF165881_1 catabolic alanine racemase DadX [Pseudomonas aeruginosa PAO1]
          Length = 357

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 178/372 (47%), Gaps = 30/372 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--Y 124
           G++LR    +  I +L G     E ++I   +   V+    QL    +     ++ P   
Sbjct: 63  GLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIER---ASLARPLNV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLERF 182
            L++D+G +R+G    E     H       G+++ I+  SH + AD+        QL  F
Sbjct: 120 WLKMDSGMHRVGF-FPEDFRAAHERLRAS-GKVAKIVMMSHFSRADELDCPRTEEQLAAF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTA 238
                  +G E SL +S  +L  P       RPGI LYG T    ++HP+    + V+T 
Sbjct: 178 SAASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGAT-PFERAHPLADRLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+++I +R   AGE V YG +    R   I V A+GYADGYP         H+     G 
Sbjct: 236 ESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYP--------RHAAD---GT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL
Sbjct: 285 LVFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLL 344

Query: 359 VRIGTRYAKFYT 370
             +  R  + Y+
Sbjct: 345 CNL-KRVPRVYS 355


>gi|167578429|ref|ZP_02371303.1| alanine racemase [Burkholderia thailandensis TXDOH]
          Length = 374

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 176/363 (48%), Gaps = 29/363 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + N+R  +VVK NAYG G E++ PAL +A      +  ++E V
Sbjct: 8   RIHPDAIAHNLAIVRKKAPNSRVWSVVKANAYGHGIERVYPALADA--DGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ- 127
           ++R       + +L GI    +  I D + + V +    QL     L S   + P  +Q 
Sbjct: 66  RVRELGWTKPVLLLEGIFDAADIEIADRHRLTVAVHGDEQLKL---LTSAKTTRPIDIQL 122

Query: 128 -VDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +++G NRLG       D +   +    +G+++L++ H A ADD        Q+  F   
Sbjct: 123 KMNSGMNRLGYRPSAFRDAWERAAAAPSIGRIALMM-HFANADDGEI---DWQMSVFDAA 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEAR 241
                G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +R
Sbjct: 179 TDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTLTSR 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++    GE V YG +    R+  I V A GYADGYP         H+PS   G    
Sbjct: 238 IIGVQTLSPGETVGYGRRFAAEREMRIGVVACGYADGYP--------RHAPS---GTPIA 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +  ++G+++MDM   D+T      VG  ++++G  +++DDVA A+GT  Y+L+  +
Sbjct: 287 VDGVLTRVVGRVSMDMLTVDLTPCPHAGVGSTVELWGKQVRVDDVAEAAGTIGYELMCAL 346

Query: 362 GTR 364
             R
Sbjct: 347 ARR 349


>gi|51246605|ref|YP_066489.1| alanine racemase [Desulfotalea psychrophila LSv54]
 gi|50877642|emb|CAG37482.1| related to alanine racemase [Desulfotalea psychrophila LSv54]
          Length = 373

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 178/386 (46%), Gaps = 32/386 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N F  + +  +AL+ N+ +M + +    +  A+VK +AYG G  ++A AL +     
Sbjct: 1   MKRNSFNNVTVCRSALRKNFKTMQDKMGQGGKLMAMVKADAYGHGAVEVAKALQDVACSS 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V  + E V LR       IFV+ G       ++FD  L PV+     +   S     G
Sbjct: 61  FGVAEIREAVLLRDAGITGDIFVMLGFDLDAVGLMFDYRLTPVVHCYEDIVALSVE---G 117

Query: 120 VSHPYA----LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           V   Y     ++VDTG  RLG   ++ L   HN        ++ ++SH   AD  +S  +
Sbjct: 118 VKRGYEIGCHIKVDTGMRRLGFEPEQVLGVAHNISRLSGVFVAGMLSHFPEADVVNSPSS 177

Query: 176 SVQLERFRT----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKIN 227
              + RF +    L S +  +   LA+S G+L  P   F + R GIS+YG    G  +  
Sbjct: 178 RDGIRRFASLDVVLKSEFSTV-CHLANSGGVLNFPESLFDMGRSGISIYGYHPAGAIEGG 236

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            + P    ++  +RI+ ++K  AG  VSYG      R +L+AV   GY DGY  +LS   
Sbjct: 237 GTSPFIPAMSFRSRILQVKKVAAGTGVSYGHSYITKRPTLLAVLPTGYEDGYRRSLSN-- 294

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      +  I+G   P+ G+I M+  + D+TD  ++  GD + + G      I  
Sbjct: 295 ---------KAEVLIRGQRAPVRGQICMNACVVDVTDIENVTAGDEVVLLGEQGNERITA 345

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DD+A  + T +Y++L  +G    + Y
Sbjct: 346 DDIAEWADTISYEILCMLGHTNNRLY 371


>gi|283785526|ref|YP_003365391.1| alanine racemase, catabolic [Citrobacter rodentium ICC168]
 gi|282948980|emb|CBG88583.1| alanine racemase, catabolic [Citrobacter rodentium ICC168]
          Length = 356

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 182/371 (49%), Gaps = 38/371 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++  +DL ALK N + +   + +AR  +VVK NAYG G ++I  AL   G   F + ++E
Sbjct: 5   IQASLDLQALKQNLNIVRQAAPDARVWSVVKANAYGHGIDRIWNAL--GGTDGFALLNLE 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E + LR    +  I +L G    ++  ++DT  L   + S  QL     + +  ++ P  
Sbjct: 63  EAITLRERGWKGPILMLEGFFHAEDLAVYDTWRLTTCVHSNWQL---KAIQNAKLNAPLD 119

Query: 126 L--QVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLER 181
           +  +V++G NRLG  L E L            +G+++L+ SH A A+ P     ++    
Sbjct: 120 IYVKVNSGMNRLGF-LPERLQTVWQQLRAMPNVGEMTLM-SHFATAEHPGGIGKAMARIG 177

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
             T     +G+E   SLA+S+  L  P  H    RPGI LYG +      D  N    ++
Sbjct: 178 LAT-----EGLECRRSLANSAATLWHPEAHGDWVRPGIILYGASPSGQWRDIANTG--LK 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AG+ V YG +     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLNSEIIGVQTLQAGDRVGYGERFTAQGEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT 
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALALR 350


>gi|85710981|ref|ZP_01042042.1| Alanine racemase [Idiomarina baltica OS145]
 gi|85695385|gb|EAQ33322.1| Alanine racemase [Idiomarina baltica OS145]
          Length = 384

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 185/380 (48%), Gaps = 38/380 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +I LT L++N   + +         V+K + YG G  ++A A+ +  V+ + V  ++E
Sbjct: 23  RARILLTNLRDNAKQLKSYIDQQPMLGVIKADGYGHGATEVAHAITDY-VEKYAVAFIDE 81

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + LR       I +L G++  ++ ++  +    PVI +  Q+   S++ S        L
Sbjct: 82  AIALRGSGIDKPIVILQGVYSTEDWLLCAEQQFEPVIHNAQQIDCLSEITSEANRVNVWL 141

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--------LIISHLACADDPSSHVNSVQ 178
           + D+G +RLG        F  +     +GQL         ++++H A AD+P S + ++Q
Sbjct: 142 KQDSGMHRLG--------FFADDVEGAVGQLRAHALINQIVLMTHFAEADNPESPLTAIQ 193

Query: 179 LERFRTLISHYKG-IEASLASSSGILLGPNY--HFQLT---RPGISLYG---GTDKINKS 229
           LERF  ++   +  I+    ++S  +LG +      LT   R GI+LYG       +  +
Sbjct: 194 LERFYAVLHAVRDKIDGVSVANSAFMLGDDVLDAMGLTKWFRAGIALYGQNPSQADLTDN 253

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  +  EA +I +R    GE V YG + +  R+S IA  AIGYADGYP +L      
Sbjct: 254 VELKPTMALEAPVIALRIIQPGETVGYGSRWRAQRESRIATVAIGYADGYPRSLPD---- 309

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                  G    I G +  ++G+I+MDM   D+TD   IE+GD ++++G  + +  +A  
Sbjct: 310 -------GTPMIINGQVGCLVGRISMDMITVDVTDIEGIELGDNVELWGEQLPIQVIADQ 362

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T  Y+L  ++  R  + Y
Sbjct: 363 ARTITYELFAQVTRRVPRVY 382


>gi|325923659|ref|ZP_08185284.1| alanine racemase [Xanthomonas gardneri ATCC 19865]
 gi|325545858|gb|EGD17087.1| alanine racemase [Xanthomonas gardneri ATCC 19865]
          Length = 366

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 179/356 (50%), Gaps = 25/356 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLDALRHNYRLAKRLGGS-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V ++  Q+   +   S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATTQQVRALADFQSPRPLRAW-LKLD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELECSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           +     E SL +S G+L  P      +RPG+ LYG      +   +  ++ V+T  +RII
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQETESTAQLRPVMTLRSRII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG +    R + + V A+GYADGYP        + +P+   G    + 
Sbjct: 241 SVRELPAGEPVGYGARFVAQRPTRVGVVAMGYADGYP--------QFAPN---GTPVLVD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           G + P++G+++MDM   D+T+    E+G  +Q++G   ++  +A     + Y LL 
Sbjct: 290 GVVCPLIGRVSMDMLTVDLTEHPQAEIGAPVQLWGDAPRVAPLATQCNVSAYQLLC 345


>gi|167625575|ref|YP_001675869.1| alanine racemase [Shewanella halifaxensis HAW-EB4]
 gi|167355597|gb|ABZ78210.1| alanine racemase [Shewanella halifaxensis HAW-EB4]
          Length = 358

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 179/368 (48%), Gaps = 24/368 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F R +I   ALKNN   ++ L+ +++  AVVK N YG G   +A  L NA    F +  +
Sbjct: 4   FPRAEISRHALKNNLARLHELAPSSKVMAVVKANGYGHGLLNVAQCLDNA--DGFGLARL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +A++ +L G     + + + + ++  V+    Q+     L    ++ P 
Sbjct: 62  EEALALRAGGVKAKLLLLEGFFRAADLVTLVEHDIETVVHHESQIEM---LEQAELNKPV 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++D+G +RLG    E         +   + +   +++H ACAD+PS+   + QL  
Sbjct: 119 TVWMKIDSGMHRLGFVPDEFKVVYQRLLDCDNVAKPINLMTHFACADEPSNPYTAEQLAV 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
           F  L     G + +LA+S+G L          RPGI+LYG +     +   H +   +  
Sbjct: 179 FEALTKDLPG-DRTLANSAGALFWQQSQANWIRPGIALYGVSPVVGDLGTKHGLIPAMEL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +++I IR   AG+ V Y       +D+ + V AIGY DGYP         ++P   LG 
Sbjct: 238 VSQLIAIRDHKAGQPVGYASYWTADKDTKLGVVAIGYGDGYP--------RNAP---LGT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I G + PI+G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+
Sbjct: 287 PVLINGRLAPIVGRVSMDMLTVDLGADAKDSVGDKAVLWGKELPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|226946802|ref|YP_002801875.1| alanine racemase [Azotobacter vinelandii DJ]
 gi|226721729|gb|ACO80900.1| alanine racemase [Azotobacter vinelandii DJ]
          Length = 361

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 190/381 (49%), Gaps = 45/381 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L G AR  AVVK +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLAALRHNYRLAREL-GGARALAVVKADAYGHGAVRCARAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQL-----TFYSKLMSCGVS 121
            ++LR     A I +L G     E + I   +L  V+ S  QL     T  ++ ++C   
Sbjct: 63  ALELREAGIAAPILLLEGFFESAELEPIQRHDLWCVVHSPWQLEAIERTALTRPLTCW-- 120

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLII--SHLACADDPSSHVNS 176
               L++D+G +R+G +  +     + + + +L   G+++ I+  SH A AD+      +
Sbjct: 121 ----LKLDSGMHRVGFAPAD-----YRAAHARLMASGKVARIVAMSHFARADELDCPRVA 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHF-----QLTRPGISLYGGTD---KINK 228
            QL +F T  +     E SL +S  +L  P +       +  RPGI LYG T       +
Sbjct: 172 EQLAQFETATAGLVA-EFSLRNSPALLGWPQFFRHGHGDEWLRPGIMLYGATPFERYQEQ 230

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++ V+T E+RII +R+  AGE V YG +   +R + + V A+GYADGYP        
Sbjct: 231 AAQLRPVMTLESRIIGVRELPAGEPVGYGARFVASRPTRVGVVAMGYADGYP-------- 282

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
            H+P+   G    + G    ++G+++MDM   D+TD     +G  ++++G  +   +VA 
Sbjct: 283 RHAPN---GTPVAVDGRPAQLIGRVSMDMLTVDLTDLPQAGLGSRVELWGAQVPASEVAA 339

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A+GT  Y L   +  R A+ +
Sbjct: 340 AAGTIAYQLFCNV-RRVARSW 359


>gi|126697057|ref|YP_001091943.1| alanine racemase [Prochlorococcus marinus str. MIT 9301]
 gi|126544100|gb|ABO18342.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9301]
          Length = 399

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 183/375 (48%), Gaps = 37/375 (9%)

Query: 15  ALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL+ N   +   L  N +  AVVK + YG   + +       G  +  V ++EEG+KLR 
Sbjct: 36  ALETNVRQLRTKLRKNCQFMAVVKADGYGHDAKVVCDYAIKGGASELGVATLEEGIKLRS 95

Query: 74  YTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTG 131
           +  +  I +L  ++  ++ II F  +L+P ISS+ +    + +    G+     L+VDTG
Sbjct: 96  FGVKKPILILGNLYTKRDLIISFKNDLMPTISSIRECLVCNNIGKHFGLKFSLHLKVDTG 155

Query: 132 FNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADD----PSSHVNSVQLERFRT 184
            +RLG    E+  F       K    +S+  I SHL+ AD+     S  +   Q  +F  
Sbjct: 156 MSRLGF---ESKKFIQQFEKIKSFENISIEGIYSHLSSADENNALDSQSITQSQRLKFNE 212

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVT 237
           L+          I+  LA+S+G+LL  ++HF + R G+S+YG +   KI+K+  ++  ++
Sbjct: 213 LLKQINFDRNNEIKIHLANSAGMLLSKDFHFHMVRVGLSMYGYSPLAKIDKNLLLKPALS 272

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVFL 296
            + ++  IR    G  VSYGG+    R + +AV +IGYADG P  LSG +   H+   + 
Sbjct: 273 LKVKVAFIRTIDKGVSVSYGGKFVSNRKTKLAVLSIGYADGVPRNLSGKIKVIHNNKFY- 331

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                      P +G ITMD  M DITDS  I+VG  + + G D    I   + +  S T
Sbjct: 332 -----------PQVGSITMDQMMVDITDSKEIKVGSIMVLLGSDGDKTISPLEWSRKSNT 380

Query: 353 TNYDLLVRIGTRYAK 367
             +++L     R  K
Sbjct: 381 IPWEILCSFKNRLPK 395


>gi|158321297|ref|YP_001513804.1| alanine racemase [Alkaliphilus oremlandii OhILAs]
 gi|158141496|gb|ABW19808.1| alanine racemase [Alkaliphilus oremlandii OhILAs]
          Length = 390

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 183/390 (46%), Gaps = 36/390 (9%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M + E LR    +I+L  LK+N H++ N +  +    AV+K + YG G  +IA  L   G
Sbjct: 1   MITKENLRPVWAEINLDHLKHNIHAIKNIVKKDTIVCAVIKADGYGHGAAEIAKTLLENG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKL 115
                V ++ E V LR    +  I VL      Q ++I D N+   + S  Q L F +  
Sbjct: 61  ADRIAVATLSEAVALRKSGYEVPIMVLGYTPEHQGELILDNNITQTVYSYDQALEFSNAA 120

Query: 116 MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                     L++DTG +RLG    +EA+      FN     +  I +H A ADD     
Sbjct: 121 KQKNQKMTLHLKIDTGMSRLGFQPNEEAIHDIKKIFNLPNLTIEGIFTHFAAADDRDK-- 178

Query: 175 NSVQLERFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTD 224
            +   ++F T +   K +E          +++S+ I+  P  +  + RPGI LYG   +D
Sbjct: 179 -AYTYQQFHTFMDFVKKLEQEGCPIPIKHVSNSAAIMDLPEMNLDMVRPGIILYGLYPSD 237

Query: 225 KINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
            ++KS   ++ V+  +A+I  ++       +SYG +   + D  I    IGYADGY   +
Sbjct: 238 DVDKSRIELKQVMELKAKISHVKTLTKDRGISYGLKYTTSGDEKIITMPIGYADGYTRMM 297

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
           SG             +  +KG  +P++G+I MD  M + T  L +E GD + ++  D   
Sbjct: 298 SG-----------KAEAIVKGNKIPLVGRICMDQCMANAT-GLDVEPGDEVTLYSNDRES 345

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            + +DD+A   GT NY+++  +G R  + Y
Sbjct: 346 GLSIDDIANKLGTINYEIVCMLGKRVPRVY 375


>gi|262372192|ref|ZP_06065471.1| alanine racemase [Acinetobacter junii SH205]
 gi|262312217|gb|EEY93302.1| alanine racemase [Acinetobacter junii SH205]
          Length = 356

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 177/360 (49%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ +++  ++VK NAYG G +    AL NA    F V  +EE + 
Sbjct: 8   IDSEALQYNLNRVKQLAPHSQIVSMVKANAYGHGVQDCLAAL-NA-TDAFGVACLEEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTF--YSKLMSCGVSHPYALQ 127
           +R       I ++ G+    E + +    L  V+    Q+ +   +K     +     ++
Sbjct: 66  IRRLGYTQPITLIEGVFTEDEMEDVIQQKLECVVHRHEQVEWLIQNKEAYNALGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG  + E +   H    K L    ++  H A AD     +N  Q+++F  + +
Sbjct: 126 LNSGMNRLGFKINEIIAVIHQL--KSLNFNCVLTMHFANAD-VDHPLNEQQIQQFLEVKN 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
             + I AS  +S+ I   PN HF   RPGI LYG T   DK      ++ V++ EA II 
Sbjct: 183 ACEPILASCCNSAAIYKYPNLHFDYVRPGIMLYGATPFADKDVNELDLKPVMSFEAEIIT 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           + +  AGE V YG     T    IA+ +IGY DGYP           P+        I  
Sbjct: 243 LNQIQAGESVGYGSTFTATNSMQIAIVSIGYGDGYPRAYV------KPNYVA-----IDK 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D T+ L ++VG  ++++G    +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QLTPVIGRVSMDMIAIDTTN-LQVKVGTKVELWGKTRLVDDVANANGTIGYELLCRLSNR 350


>gi|46202740|ref|ZP_00052682.2| COG0787: Alanine racemase [Magnetospirillum magnetotacticum MS-1]
          Length = 228

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 12/237 (5%)

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191
            NRLGL ++EAL  + +    + G + L++SHL  A+ P   + + Q E F  + + +  
Sbjct: 1   MNRLGLRVEEALALSGDPVIARAG-IDLVMSHLVSAEQPDDPLTAHQAEAFARVRAAFPH 59

Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAG 251
           + ASLA+SSG  L  +    L RPG  L+GG  +  +++PM+ VV  EA I+ +R+  AG
Sbjct: 60  LRASLANSSGTCLADDARHDLLRPGYCLFGGNPEPGRANPMRPVVRLEATILQVRQVEAG 119

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
           E   Y  + +      +A  ++GYADGYP + S             G   + G + P+LG
Sbjct: 120 ETCGYNARWRAPAPRRLATLSLGYADGYPRSASN-----------SGHALVGGVLCPMLG 168

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
            I+MD+ + D+T +     G    + G  + +D V  A+GT  Y++L  +G+RY + 
Sbjct: 169 LISMDLIILDVTHAPEARRGGTATLIGDSLDIDTVGQAAGTIGYEILTGLGSRYVRI 225


>gi|49258690|pdb|1RCQ|A Chain A, The 1.45 A Crystal Structure Of Alanine Racemase From A
           Pathogenic Bacterium, Pseudomonas Aeruginosa, Contains
           Both Internal And External Aldimine Forms
          Length = 357

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 177/372 (47%), Gaps = 30/372 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--Y 124
           G++LR    +  I +L G     E ++I   +   V+    QL    +     ++ P   
Sbjct: 63  GLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIER---ASLARPLNV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLERF 182
            L +D+G +R+G    E     H       G+++ I+  SH + AD+        QL  F
Sbjct: 120 WLXMDSGMHRVGF-FPEDFRAAHERLRAS-GKVAKIVMMSHFSRADELDCPRTEEQLAAF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTA 238
                  +G E SL +S  +L  P       RPGI LYG T    ++HP+    + V+T 
Sbjct: 178 SAASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGAT-PFERAHPLADRLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+++I +R   AGE V YG +    R   I V A+GYADGYP         H+     G 
Sbjct: 236 ESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYP--------RHAAD---GT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL
Sbjct: 285 LVFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLL 344

Query: 359 VRIGTRYAKFYT 370
             +  R  + Y+
Sbjct: 345 CNL-KRVPRVYS 355


>gi|213859876|ref|ZP_03385580.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 320

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 159/335 (47%), Gaps = 35/335 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +P IS+      V      + L +  ++ P 
Sbjct: 66  LRAGGITQPILLLEGF--------FDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVT 237
           F        G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++
Sbjct: 178 FNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMS 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R   AGE V YGG     RD+ + V A+GY DGYP          +PS   G
Sbjct: 237 LTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
               + G  VPI+G++ MDM   D+  +     GD
Sbjct: 286 TPVLVNGREVPIIGRVAMDMICVDLGPNAQDNAGD 320


>gi|188533687|ref|YP_001907484.1| Alanine racemase, catabolic [Erwinia tasmaniensis Et1/99]
 gi|226711042|sp|B2VJ52|ALR_ERWT9 RecName: Full=Alanine racemase
 gi|188028729|emb|CAO96591.1| Alanine racemase, catabolic [Erwinia tasmaniensis Et1/99]
          Length = 356

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 179/368 (48%), Gaps = 40/368 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL+ N       +G +R  +VVK NAYG G +++  +L  A    F + ++EE + 
Sbjct: 9   INRAALRQNLAIARQAAGGSRLWSVVKANAYGHGIDRVWQSL--AETDGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    +  I +L G  HP   +I+    L   + S  Q+     L    +S P    L+
Sbjct: 67  LRERGWKKPILLLEGFFHPADLEILDRYRLTTSVHSNWQI---KALAEAKLSAPLDIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +++G NRLG   ++     +N++ K      +G+L+L+ +H A A+           E  
Sbjct: 124 MNSGMNRLGFQPEQ----VNNAWQKLRSLKNVGELTLM-AHFADAESTEGVA-----EPL 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVV 236
           + +    +G+E   SLA+S+  L  P  H    RPGI LYG    G  +      +Q V+
Sbjct: 174 KRIEQAAEGLECPRSLANSAATLWHPQTHHDWVRPGIILYGASPSGRWQDIAGSGLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II +++  AG  V YG + + +    I V A GYADGYP         H+P+   
Sbjct: 234 TLTSEIIGVQQLAAGSCVGYGSRYRASGSQRIGVVACGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G M  ++G ++MDM   D+T      +G  ++++G  +K+DDVA ASGT  Y+
Sbjct: 283 GTPIRVDGEMTQVVGAVSMDMITVDLTPCPQAGIGSQVELWGNSVKIDDVASASGTVGYE 342

Query: 357 LLVRIGTR 364
           L+  +  R
Sbjct: 343 LMCALAQR 350


>gi|307132473|ref|YP_003884489.1| alanine racemase 1, PLP-binding, biosynthetic [Dickeya dadantii
           3937]
 gi|306530002|gb|ADM99932.1| alanine racemase 1, PLP-binding, biosynthetic [Dickeya dadantii
           3937]
          Length = 358

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 176/361 (48%), Gaps = 24/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  A+VK NAYG G  + A A  +A    + V+ + E + 
Sbjct: 8   IDRQALRHNLQRIRQMAPQSRLIAIVKANAYGHGAVEAARAFSDA--DGYGVSRLSEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     E  ++ +  L   +    QL   + L    + HP    ++
Sbjct: 66  LRAAGITKPILLLEGFFAADELPLLAEHQLETAVHCEEQL---AALEQARLPHPLTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F    S    + Q   I+SH   AD+P +     QL+ F   +
Sbjct: 123 LDTGMHRLGVLPEKAEAFYARLSACANVVQPVNIMSHFCRADEPQAGTTQHQLDCFDAFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI  YG +           ++  +T  + +I
Sbjct: 183 QDKPGRQ-SIAASGGILLWPQTHRDQIRPGIIQYGVSPLAQGDASQWQLKPAMTLTSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  A E V YGG     R + + V AIGY DGYP      D++    V++ G+    
Sbjct: 242 AVREHHADEPVGYGGTWTSPRATRMGVIAIGYGDGYPR-----DAKSGTPVWINGR---- 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              VP+ G+++MDM   D+  +   +VGD + ++G  + ++ VA  SG + Y+L+ R+ +
Sbjct: 293 --EVPLSGRVSMDMITVDLGPNAQDKVGDEVILWGGPLPVEKVAAHSGISAYELITRLTS 350

Query: 364 R 364
           R
Sbjct: 351 R 351


>gi|121997449|ref|YP_001002236.1| alanine racemase [Halorhodospira halophila SL1]
 gi|254802365|sp|A1WUS2|ALR_HALHL RecName: Full=Alanine racemase
 gi|121588854|gb|ABM61434.1| alanine racemase [Halorhodospira halophila SL1]
          Length = 364

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 171/372 (45%), Gaps = 33/372 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  ++L+AL+ N  +  A +   R  AV+K + YG G   +A AL     + F VT  +E
Sbjct: 6   RATVNLSALRANLRTARAAAPQQRIMAVIKSDGYGHGLAVVAGAL-TGHAEAFAVTDADE 64

Query: 68  GVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
              LR    + RI +L G             +L  VI +  Q+     L    ++ P   
Sbjct: 65  AEALRAAGFRERIVLLQGPFAVDDLARAAAADLELVIHAHWQV---EALAQAQLASPVTV 121

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVNSVQ 178
            L+VD+G +RLG   +E  D       ++L + S +      ++HLACADD        Q
Sbjct: 122 WLKVDSGMHRLGFPPEEVQDAW-----RRLTEASCVRADIGFLTHLACADDRDDPATERQ 176

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235
           LE F+       G   S A+S+G+L  P  H+   RPGI LYG +   D  ++   +Q  
Sbjct: 177 LETFQAACDGLPGPR-SAANSAGVLGWPASHYDWVRPGIMLYGASPFVDGRDEQPALQPA 235

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  + R++ +R   AG+ V YG          + V +IGY DGYP         H+PS  
Sbjct: 236 MAFQGRVVAVRHLRAGDPVGYGATWSCPEAMPVGVVSIGYGDGYP--------RHAPS-- 285

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+I+MDM   D+     +  GD   ++G  ++ ++VA A GT  Y
Sbjct: 286 -GTPVEVAGQRTRLVGRISMDMLAVDLRGLDPVAEGDPAILWGGAVRAEEVAGACGTIAY 344

Query: 356 DLLVRIGTRYAK 367
           +L  R+  R  +
Sbjct: 345 ELFCRMPPRVRR 356


>gi|322418170|ref|YP_004197393.1| alanine racemase [Geobacter sp. M18]
 gi|320124557|gb|ADW12117.1| alanine racemase [Geobacter sp. M18]
          Length = 379

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 179/378 (47%), Gaps = 30/378 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL++N+  +   +       AVVK +AYG G + ++  L   GV  F V  + E
Sbjct: 8   VEIDLAALRHNFGLVQKKVPQGCGILAVVKADAYGHGFQYVSEELEKLGVDAFAVAFLAE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLMSCGVSHPY 124
           GV+LR+      + +L G++PG+E+     N+   + S+     L   +  + C      
Sbjct: 68  GVQLRMSGIYRPVLILGGVYPGEERRCIGLNISTALYSLEQAAALDQAALEIKCYRKAKV 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSS-HVNSVQLER 181
            L+VDTG  RLG++  +  +F       K  ++  I SH A AD  DP       +Q ER
Sbjct: 128 HLKVDTGMGRLGVTWDKVPEFLAELRQFKNLEMEGIFSHFASADELDPDGLAFTKLQAER 187

Query: 182 FRTLI--SHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQT 234
           F   +  +  +G E     +A+S+ IL        L RPGI LYG   +   +  +    
Sbjct: 188 FNAAVVEARRQGFEPRYVHVANSAAILAADLPFCNLVRPGIILYGAAPSGDFSDENSALP 247

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  ++R+ +++    G  +SYG +      +LIA   +GYADGY  +L+          
Sbjct: 248 VMKLKSRVAMLKWVEPGTTISYGRRYVARERALIASVPVGYADGYCRSLTN--------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALA 349
              G+  I+G    + G + MD  M D+TD   + VGD + + G D     I  +++A  
Sbjct: 299 --KGEALIRGERARVAGTVCMDWIMLDVTDIEGVAVGDEVTLLGADPMGDRISAEELAEK 356

Query: 350 SGTTNYDLLVRIGTRYAK 367
           +GT  Y+++  I TR  +
Sbjct: 357 AGTIAYEIMCGISTRRVR 374


>gi|332652709|ref|ZP_08418454.1| alanine racemase [Ruminococcaceae bacterium D16]
 gi|332517855|gb|EGJ47458.1| alanine racemase [Ruminococcaceae bacterium D16]
          Length = 373

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 180/378 (47%), Gaps = 44/378 (11%)

Query: 10  KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++DL AL +N   +  AL+   R  +VVK +AYG G   +A  L   GV+ F V  +EEG
Sbjct: 11  EVDLNALAHNARVLQGALAPGCRLMSVVKADAYGHGSIPVARRLEAEGVKAFAVACLEEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    Q +I +L    PG   + F      ++ +V        L + GV     L +
Sbjct: 71  IALRRSGIQGKILILGYTSPG---MAFQICRWKLVQTVADEGHGRALAAQGVPLSVHLAL 127

Query: 129 DTGFNRLGLSLQEALDFTHNSFNK--KLGQLSL--IISHLACADDPSSHVNS---VQLER 181
           DTG +RLG+ +++     H + ++  KL  L++    SHL  +D   +   S    QLE+
Sbjct: 128 DTGMHRLGIPVED-----HEAISRLYKLPNLNIQGTFSHLCVSDSLEAKDVSFTHTQLEQ 182

Query: 182 F----RTLISH-YKGIEASLASSSGILLGPNYHFQLTRPGISLYG------GTDKINKSH 230
           F    R L +H     E  + +S GI   P       R GI+LYG       T++    H
Sbjct: 183 FYGAVRWLKTHGMNPGEIHIQASYGIWNLPPQPCFWARAGIALYGIFSNDAHTERKLDLH 242

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P   V++  AR+ L+R  L GE   YG   +  +   +AV  IGYADG P +LS      
Sbjct: 243 P---VLSLRARVALVRTMLPGEGAGYGLAFRTDQMRRLAVVTIGYADGLPRSLSQ----- 294

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                 GG+  + G   P++G++ MD  M D+TD   ++ GD   I G D    I+ +DV
Sbjct: 295 -----QGGEVLLHGTRCPMVGRMCMDQLMVDVTDVPCVKPGDVATIIGTDGGEVIRAEDV 349

Query: 347 ALASGTTNYDLLVRIGTR 364
           A   GT   +LL R+G R
Sbjct: 350 AGQCGTITNELLSRLGQR 367


>gi|221212666|ref|ZP_03585643.1| alanine racemase [Burkholderia multivorans CGD1]
 gi|221167765|gb|EEE00235.1| alanine racemase [Burkholderia multivorans CGD1]
          Length = 373

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 179/360 (49%), Gaps = 33/360 (9%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R  AVVK NAYG G E+I PAL  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPAL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L GI  P   +++    L   +    QL     L++     P  +Q  +++G
Sbjct: 71  GWDKPVLLLEGIFEPADVELVERHRLTVAVHCDEQLDL---LIAAKPQQPIDIQLKMNSG 127

Query: 132 FNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
            NRLG    + + A +   ++    +G+++L++ H A AD+    V+  QL +F    + 
Sbjct: 128 MNRLGYRPDAFRAAWERAASA--PSIGRITLMM-HFANADE--GEVDW-QLAQFDAATAG 181

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIIL 244
             G E +L++S+ +L  P  H    RPG  LYG +      H    P+   +T  ++II 
Sbjct: 182 IPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLTSKIIG 240

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++   AGE V YG +    R   I V A GYADGYP         H+P+   G    + G
Sbjct: 241 VQTLAAGETVGYGRRFTAERPMRIGVVACGYADGYP--------RHAPT---GTPIAVDG 289

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 290 VLTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCALARR 349


>gi|114331518|ref|YP_747740.1| alanine racemase [Nitrosomonas eutropha C91]
 gi|122313683|sp|Q0AFV7|ALR_NITEC RecName: Full=Alanine racemase
 gi|114308532|gb|ABI59775.1| alanine racemase [Nitrosomonas eutropha C91]
          Length = 361

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 177/366 (48%), Gaps = 24/366 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  ID TAL++N   + + +  AR  AVVK +AYG G  +   AL  A    F V  +E
Sbjct: 5   IRALIDCTALQHNLSVVRSHTRQARIMAVVKADAYGHGLLRTTQALNTA--DGFAVLELE 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
             ++LR       + +L G    +E    D   L  VI S  QL+        G    Y 
Sbjct: 63  AAIQLREAGFNQPVLLLEGFFSAEELEAIDHYQLSTVIHSHEQLSLLLAHRKTGKPDIY- 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADD--PSSHVNSVQLERF 182
           L+++TG NRLG   +E   +  N   +     S+ +++H +CADD   +  VN  QL++F
Sbjct: 122 LKINTGMNRLGFRPEEE-SYVFNRIRQWRSDTSITLMTHFSCADDALEADQVNQ-QLDQF 179

Query: 183 RTLIS-HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
             L       +  +LA+S+ IL  P  H    RPGI LYG +   DK      ++ V+T 
Sbjct: 180 AALHDVKENNLPQTLANSAAILRYPGTHADWVRPGIVLYGASPLPDKTGIELGLRPVMTL 239

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ++II +++    + V YGGQ    +   I V A GYADGYP         H+P+   G 
Sbjct: 240 TSQIIAVQQLDPSDRVGYGGQFIANQPMRIGVVAAGYADGYP--------RHAPT---GT 288

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    ++G+I+MDM   D+       VG  + ++G  + +++VA ++ T +Y+LL
Sbjct: 289 PVLVNGQRTRLVGRISMDMLTVDLNGISEAGVGSPVTLWGEGLPVEEVAKSAQTISYELL 348

Query: 359 VRIGTR 364
             +  R
Sbjct: 349 TALSPR 354


>gi|117617805|ref|YP_855561.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559212|gb|ABK36160.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 357

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 178/362 (49%), Gaps = 24/362 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+  AL++N   +   +   +  AVVK NAYG G   +A  L +A    + V  +EE +
Sbjct: 7   QINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVDADA--YAVARIEEAL 64

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G     +  ++   NL   + +  QL     L    +  P    L
Sbjct: 65  MLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQL---EALEQADLPAPVVAWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG+   E   F    +  K + Q   I++H + +D+        Q++ F  L
Sbjct: 122 KLDTGMHRLGVRADEMPAFIERLAKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSQL 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARI 242
            +   G E ++A+S+GIL  P+ H    RPG+ LYG +   + +   + +Q V+T + ++
Sbjct: 182 TAPLLG-ERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQL 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YG      RD+ + V AIGY DGYP          +P+   G    +
Sbjct: 241 IAVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYP--------RMAPN---GTPVLV 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G +VP++G+++MDMT  D+    + + GD   ++G  + ++ VA   GT  Y+L+ ++ 
Sbjct: 290 NGRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLT 349

Query: 363 TR 364
           +R
Sbjct: 350 SR 351


>gi|158520074|ref|YP_001527944.1| alanine racemase [Desulfococcus oleovorans Hxd3]
 gi|254802360|sp|A8ZRV0|ALR_DESOH RecName: Full=Alanine racemase
 gi|158508900|gb|ABW65867.1| alanine racemase [Desulfococcus oleovorans Hxd3]
          Length = 390

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 190/393 (48%), Gaps = 52/393 (13%)

Query: 10  KIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+ +N  ++ AL+  A R  A VK + YG G  ++A     +G     V+ ++E 
Sbjct: 9   EIDLDAVAHNVAALKALTRPACRLMAAVKADGYGHGMCEVASVALESGASALGVSRIDEA 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
           + LR +   A I VL      + + + D NLI  + ++ +    S+  +  G +    L+
Sbjct: 69  LDLRNHGITAPILVLGHTPAHRCREMVDQNLIQTVCALAEAQALSRAATAIGATVSVHLK 128

Query: 128 VDTGFNRLGLSL--------QEALDFTHNSFNKKLGQLSL-------IISHLACADDP-S 171
           VDTG  RLG++         QEA      +  + L  L L       + +H ACAD    
Sbjct: 129 VDTGMGRLGINTVVPGRTAPQEA------AVKEALAVLDLPGLAAEGVFTHFACADSADK 182

Query: 172 SHVNSVQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYG--GTD 224
           +H N+ Q +RF TLI   +     +A     +S+ ++  P  H  + R GI++YG   + 
Sbjct: 183 THANA-QFKRFSTLIQELEAAGRPVAVRHAANSAALIDMPETHLDMVRAGIAIYGLYPSA 241

Query: 225 KINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           ++++    ++  +  + R+  ++K  AG  VSYG      + +++AV ++GYADG     
Sbjct: 242 EVDRQKVALKPAMAFKTRVAQVKKVPAGFTVSYGATYTTPKPTVLAVVSVGYADGL---- 297

Query: 284 SGLDSEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
                    +  L  +GF  ++G  VP++G+I MD+TM D+     + VGD + IFG   
Sbjct: 298 ---------NRLLSSRGFMLVRGCRVPLVGRICMDLTMLDVGGVPDVAVGDEVVIFGSQN 348

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
              I  D++A A  T +Y+++  I  R  + Y 
Sbjct: 349 GAFIGADEIADALNTISYEVVTSITGRVPRVYC 381


>gi|33862083|ref|NP_893644.1| alanine racemase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634301|emb|CAE19986.1| putative Alanine racemase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 395

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 179/344 (52%), Gaps = 33/344 (9%)

Query: 15  ALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           A+++N   + + L  N    AVVK + YG   + ++      G     V +++EG+KLR 
Sbjct: 32  AIESNVRQLRSKLKNNCEFMAVVKADGYGHDAKVVSEKAIKGGASQLGVATLKEGIKLRS 91

Query: 74  YTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTG 131
           +   A I VL  ++  ++ +I F  +L+P IS+  +    + +  S  +     L+VDTG
Sbjct: 92  FGINAPILVLGNLYTKKDLLICFRNDLMPTISTFRECLICNNIGKSNNLKFSLHLKVDTG 151

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADD-----PSSHVNSVQLERFRT 184
            +RLG    + +   +N   K L  +++  I SHLACAD+     P S    +Q E+F+ 
Sbjct: 152 MSRLGFECDQFVQQFNNI--KSLENIAVKGIYSHLACADEKNALNPKSST-QLQKEKFQE 208

Query: 185 L-----ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237
           L     I + + I+  LA+S+G++LG ++HF + R G+S+YG   +  IN++  ++  + 
Sbjct: 209 LLKIIDIDNTQNIKIHLANSAGMVLGKDFHFDMVRVGLSMYGYDPSVNINENLFLKPALF 268

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE-HSPSVFL 296
            +A++  +R    G  VSYG +    R + +AV +IGYADG    LSG  S  H+  ++ 
Sbjct: 269 LKAKVTFVRTIEKGIGVSYGNKFVSDRKTKLAVLSIGYADGIIRNLSGKISLIHNKRLY- 327

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                      P +G ITMD  M DITDS  IEVG  + + G +
Sbjct: 328 -----------PQVGSITMDQMMVDITDSNDIEVGSTMLLLGSE 360


>gi|313903544|ref|ZP_07836934.1| alanine racemase [Thermaerobacter subterraneus DSM 13965]
 gi|313466097|gb|EFR61621.1| alanine racemase [Thermaerobacter subterraneus DSM 13965]
          Length = 394

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 172/375 (45%), Gaps = 25/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A+ +N  ++  L+  A+  AVVK + YG G   +A      G +   V  VEEG
Sbjct: 15  VEVDLDAIAHNVQTLQRLAAPAQLMAVVKADGYGHGAVMVARTALAHGARRLAVAVVEEG 74

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
           V LR       I V+    P Q  +     L   +SS  +    ++     G      ++
Sbjct: 75  VHLRQSAIACPILVMGWTPPWQYALALRYELELAVSSEEEARALAEAARRDGRKVRVHIK 134

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTL 185
           +DTG  RLGL   +       +    LG L +  + +HLA ADDP + +   QL RF  +
Sbjct: 135 IDTGMGRLGLRWDQPRLAEVVARIAGLGGLEVAGVFTHLATADDPEAPLTEDQLGRFDRV 194

Query: 186 ISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           +     +G+   L   A+S+ +L  P   + L RPGI+LYG         +  +Q  +  
Sbjct: 195 LQALDERGLRPGLRHAANSAALLRLPGARYDLVRPGIALYGLEPFPGAVAAFGLQPALAW 254

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           + R+ L+++   G  +SYG      R S IA   +GYADG    LS             G
Sbjct: 255 KTRVALVKEVPPGTPISYGATFVTRRRSRIATLPVGYADGLRRALSNR-----------G 303

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTTN 354
           +  + G  VPI+G++ MD  M D+TD+  + VGD + +     G  I  D++A    T  
Sbjct: 304 QVLVGGRRVPIVGRVCMDQVMVDVTDAGPVAVGDEVVLIGRQGGEQITADEMAGWMDTIG 363

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  IG R  + Y
Sbjct: 364 YEVVTGIGRRVPRIY 378


>gi|145300176|ref|YP_001143017.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852948|gb|ABO91269.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 357

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 179/362 (49%), Gaps = 24/362 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+  AL++N   +   + + +  AVVK NAYG G   +A  L +A    + V  +EE +
Sbjct: 7   QINTAALRHNLAVVKRHAPDCKIIAVVKANAYGHGLLPVARTLVDADA--YAVARIEEAL 64

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G     +  ++   NL   + +  QL     L    +  P    L
Sbjct: 65  MLRSCAVVKPIVLLEGFFSSADLPVLAANNLQTAVHTWEQL---EALEQAELPAPVVAWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG+   E   F    +  K + Q   I++H + +D+        Q++ F  L
Sbjct: 122 KLDTGMHRLGVRADEMPAFIARLAKCKNVVQPFNIMTHFSRSDELEQSTTREQIDLFSRL 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARI 242
            +   G E ++A+S+GIL  P+ H    RPG+ LYG +   + +   + +Q V+T + ++
Sbjct: 182 TAPLLG-ERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQL 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YG      RD+ + V AIGY DGYP          +P+   G    +
Sbjct: 241 IAVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYP--------RMAPN---GTSVLV 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G +VP++G+++MDMT  D+    + + GD   ++G  + ++ VA   GT  Y+L+ ++ 
Sbjct: 290 NGRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADEIGTIPYELITKLT 349

Query: 363 TR 364
           +R
Sbjct: 350 SR 351


>gi|146312008|ref|YP_001177082.1| alanine racemase [Enterobacter sp. 638]
 gi|145318884|gb|ABP61031.1| alanine racemase [Enterobacter sp. 638]
          Length = 356

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 180/366 (49%), Gaps = 34/366 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL ALKNN   +   +  +R  +VVK N YG G E I  AL  +    F + ++EE +
Sbjct: 8   QLDLQALKNNLQIVRRAAPGSRVWSVVKANGYGHGIESIWSAL--SATDGFALLNLEEAI 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
            LR    +  I +L G     E  + D   +   +SV        L +  +  P    L+
Sbjct: 66  LLRERGWKGPILLLEGFFHADELPLLDKYRL--TTSVHSNWQIKALQNAKLHSPLDIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDPSSHVNSV-QLERFRT 184
           +++G NRLG    E ++         K +G+++L+ +H A A+ P    N++ ++E+   
Sbjct: 124 MNSGMNRLGFQ-PERVNTVWQQLRAIKNVGEMTLM-AHFADAEKPDGITNAMARIEQAAE 181

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTVVTA 238
            +   +    SL++S+  L  P  H+Q  RPGI LYG +      D  N    ++ V+T 
Sbjct: 182 GLDCAR----SLSNSAATLWHPEAHYQWVRPGIVLYGASPSGQWQDIANSG--LKPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II I+   AG+ V YG + + T +  I + A GYADGYP          +PS   G 
Sbjct: 236 RSEIIGIQTLKAGDTVGYGSRYRSTGEQRIGIVAGGYADGYP--------RLAPS---GT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             +I G     +G I+MDM   D+T      +G  ++++G ++K+DDVA A+GT  Y+LL
Sbjct: 285 PVWIDGVRTGTVGTISMDMMAIDLTPCPQAGIGSPVELWGNEVKVDDVASAAGTVGYELL 344

Query: 359 VRIGTR 364
             +  R
Sbjct: 345 TALAPR 350


>gi|237654641|ref|YP_002890955.1| alanine racemase [Thauera sp. MZ1T]
 gi|237625888|gb|ACR02578.1| alanine racemase [Thauera sp. MZ1T]
          Length = 361

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 177/357 (49%), Gaps = 20/357 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL+AL++N+       G  R  AVVK NAYG G  + A AL +     F V  + E
Sbjct: 5   RALIDLSALRHNYLLARERHGG-RALAVVKANAYGHGALRCAQALRDE-ADGFAVAFLGE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR     A I +L G+    E        L  V+    QL    +         + L
Sbjct: 63  ALELRAGGIDAPILLLEGVFAADELAEAARQRLWMVVHHEEQLCMLERTPLAAPVDVW-L 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +V++G NR G  + +A+  T        K+G++ ++++H A AD+P       QL+RF  
Sbjct: 122 KVNSGMNRAGF-VGDAVARTWRRLQASGKVGRI-VLMTHFARADEPELGTTLEQLQRFEA 179

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
             +   G   S+A+S+ IL  P       RPGI LYG      + + ++ V+T E+ ++ 
Sbjct: 180 ATAGLPGAR-SVANSAAILAWPQARRDWARPGILLYGADPMPAEGNGLRAVMTLESAVMA 238

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  +GE + YGG+    R + + + A+GYADGYP  +     + +P         ++G
Sbjct: 239 VREIASGEALGYGGRFVAERPTRVGLVAMGYADGYPRVV----PDGTPVA-------VEG 287

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               I+G+++MDM   D+T      +G  ++++G  + ++ +A A+GT +Y+LL  +
Sbjct: 288 RASRIIGRVSMDMLTIDLTALPEACLGSQVELWGKQVPINHIAQAAGTISYELLCNV 344


>gi|300717006|ref|YP_003741809.1| alanine racemase, catabolic [Erwinia billingiae Eb661]
 gi|299062842|emb|CAX59962.1| Alanine racemase, catabolic [Erwinia billingiae Eb661]
          Length = 356

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 185/369 (50%), Gaps = 42/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D +AL++N       + ++R  +VVK NAYG G +++  +   A    F + ++EE + 
Sbjct: 9   VDTSALRHNLAVARQAAPHSRVWSVVKANAYGHGIDRVWQSF--AATDGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    +  I +L G     E  I D   L   + S  Q+   +K     +S P    L+
Sbjct: 67  LRERGWKKPILLLEGFFHADELAILDQYRLTTSVHSNWQIQALAK---AKLSAPLDIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLER- 181
           V++G NRLG + ++       ++NK      +G+++L+ +H A A+       S  +E+ 
Sbjct: 124 VNSGMNRLGFAPEQ----VQQAWNKLRGLENVGEMTLM-AHFAEAE------TSEGIEQP 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SLA+S+  L  P+ H    RPGI LYG    G  +   S  +Q V
Sbjct: 173 LRRIEQAAEGLDCLRSLANSAATLWHPHTHHDWVRPGIILYGASPSGKWQDIASSGLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + II I+    G+ V YG + +   +  I V A GYADGYP         H+P+  
Sbjct: 233 MSLNSEIIAIQNLKTGDGVGYGSRYRAQGEQRIGVVACGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G     +G I+MDM   D+T  L   +G  ++++G +IK+D+VA ++GT  Y
Sbjct: 283 -GTPVWVDGVRTHTVGAISMDMITVDLTPCLQAGIGSQVELWGSNIKIDEVAESAGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  + TR
Sbjct: 342 ELMCALATR 350


>gi|253999137|ref|YP_003051200.1| alanine racemase [Methylovorus sp. SIP3-4]
 gi|253985816|gb|ACT50673.1| alanine racemase [Methylovorus sp. SIP3-4]
          Length = 356

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 176/366 (48%), Gaps = 37/366 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L AL++N   +   + +ART AVVK N YG G   +A  L  A    F V  ++E ++
Sbjct: 8   IHLAALQHNLRRVRDYAPHARTMAVVKANGYGHGLLNVARGLAEA--DGFAVLRLQEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    Q  + +L G+    E     D  +  V+ +  Q+    +  S  V     ++++
Sbjct: 66  LRAAGYQQTLLLLEGVFESTELNAAADAGVSIVVHAEHQIAMLEQ-ASLPVPIAVFVKMN 124

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSHVNSVQLER 181
           TG NRLG        F   +F   + +L+         +++H A AD+     ++  L+R
Sbjct: 125 TGMNRLG--------FVPQAFASAVARLAACPQVSSITLMTHFATADEAPGIASA--LQR 174

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTA 238
           F    +  +    SLA+S+ IL  P  H    RPGI LYG T    +  +H  +Q V+  
Sbjct: 175 FEAGAAGMQ-YPKSLANSAAILRHPESHADWVRPGIMLYGATPVQSVTAAHFGLQAVMHL 233

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I ++    GE + YG      R++ + + A GYADGYP         H+P    G 
Sbjct: 234 QSELIAVQTLPPGESLGYGATFVAERETRVGIVACGYADGYP--------RHAPG---GT 282

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +   LG+++MDM   DITD  + ++G  ++++G  I +D VA A GT  Y+LL
Sbjct: 283 PIAVAGQVSKTLGRVSMDMLFVDITDIPAADIGSPVELWGATIPVDAVAEACGTVGYELL 342

Query: 359 VRIGTR 364
             + +R
Sbjct: 343 CAVTSR 348


>gi|332704045|ref|ZP_08424133.1| Alanine racemase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554194|gb|EGJ51238.1| Alanine racemase [Desulfovibrio africanus str. Walvis Bay]
          Length = 379

 Score =  139 bits (350), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 178/379 (46%), Gaps = 38/379 (10%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L +++DL  + +N+  M   S  AR   V+K +AYG G   +A AL  AG   F V SV
Sbjct: 7   MLEVQVDLKRIVDNYRFMR--SRAARLMPVIKADAYGHGLLPVAKALAAAGADAFCVGSV 64

Query: 66  EEGVKLRL-YTPQA--RIFVLYGIHPGQ---EKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
            E V LR    P +  R+  L G    +   E +  +  L+  +    QL        S 
Sbjct: 65  GEAVTLRRERKPDSGCRVVSLLGPMDREDYAEAVSHEVTLL--VGRHEQLELLQVAASSA 122

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV- 177
           G   P AL+ DTG +RLG S  +              +L L+ SHLA AD+ S  V+ V 
Sbjct: 123 GRMAPVALKFDTGMSRLGFSEADVPRLIQTLTTSPNLRLELVTSHLATADEDSG-VDYVL 181

Query: 178 -QLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKIN 227
            Q ERFR + +         +A+LA+S+GIL  P  HF L RPGI+LYG     GT+   
Sbjct: 182 AQAERFRAITAKLSAAGLRFQANLANSAGILAYPELHFDLQRPGIALYGSNPFLGTNHEE 241

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
              P++  ++   RI+ +     G  +SYG      RD  +A+ A GYADGY   LS   
Sbjct: 242 LGRPLKQAMSVTTRILDVHDLPRGGTISYGRTYTAPRDMRVAIMAAGYADGYSRGLSN-- 299

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G+  +KG   PILG++ M +T  DIT    +  GD + + G      I +
Sbjct: 300 ---------KGQVCLKGSRAPILGRVCMQLTAVDITGREDVHPGDTVHLLGGSGRGYISV 350

Query: 344 DDVALASGTTNYDLLVRIG 362
           +++A   GT +Y+    +G
Sbjct: 351 EELAGWWGTISYESFCILG 369


>gi|310829658|ref|YP_003962015.1| alanine racemase [Eubacterium limosum KIST612]
 gi|308741392|gb|ADO39052.1| alanine racemase [Eubacterium limosum KIST612]
          Length = 399

 Score =  139 bits (350), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 181/374 (48%), Gaps = 28/374 (7%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I L  L  N   +   +G  AR   VVK +AYG G + +A  L + GV    V  ++E 
Sbjct: 19  EIKLENLLFNLEQIKKAAGPEARIMGVVKADAYGHGVD-VAELLQDEGVPCLGVAFLDEA 77

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL----MSCGVSHP 123
           + LR     +  +F+L      Q   + + ++ P    V QL F   L    ++ G  HP
Sbjct: 78  IALRQKGIDRCDLFILGYTGADQIPELVEWDVTP---GVYQLEFAQALSDYCVANGSVHP 134

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VDTG  R+G    EA +      +    ++  + +H A AD+       +QL R+ 
Sbjct: 135 VHIKVDTGMGRIGFRWDEAAEAVLKIADMPGIRIEGLYTHFATADEVDKDFTHLQLTRYA 194

Query: 184 TLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTV 235
            ++     KG+E  L    +S+ I+      F + RPGI LYG   +D++ K    ++ V
Sbjct: 195 QVVKALSDKGVEIPLKHVENSAAIIDFDKTVFNMVRPGIILYGHYPSDEVKKEKLGLKPV 254

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ + RI+ I+   AG+ VSYG +     D +IA   +GYADGY   LSG          
Sbjct: 255 MSFKTRIVHIKTIHAGDTVSYGRKFTAEGDRVIATLPVGYADGYSRMLSGK--------- 305

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G +  + G+  P++G I MD  M DIT    + + D +++FG ++ ++++A   GT +Y
Sbjct: 306 -GAEVLVNGHRAPVVGNICMDQCMVDITGLEGVSLYDEVELFGENLPVEELAEKLGTISY 364

Query: 356 DLLVRIGTRYAKFY 369
           +LL  +  R  + Y
Sbjct: 365 ELLCMVNKRVPRVY 378


>gi|294506479|ref|YP_003570537.1| Alanine racemase [Salinibacter ruber M8]
 gi|294342806|emb|CBH23584.1| Alanine racemase [Salinibacter ruber M8]
          Length = 465

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 170/373 (45%), Gaps = 25/373 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G A   A++K +AYG G   +A A Y AG++ + V  + EGV 
Sbjct: 73  VDLAAIQHNAGVLQERAGGADVMAIIKADAYGHGVRPVARAAYEAGIRHYGVARLPEGVH 132

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           LR      RI VL    P Q     + +L   + S        +  S        + VDT
Sbjct: 133 LREAGHGGRILVLGAPAPTQLPRYAEYDLDLTVPSADIAAAVVRHASPEAPLRVHVTVDT 192

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR-TLISHY 189
           G  RLGL+  +         +    +L+ + +H A AD P S     QL+RFR  + +  
Sbjct: 193 GMGRLGLAPDDVPAVMTRLADAPGVRLAGLWTHFATADAPGSSFAQTQLDRFRAVVDAVD 252

Query: 190 KGIEASLASSSGILL---GPNYHF--QLTRPGISLYG--GTDKINKSHPMQTVVTAEARI 242
             +E   A+++G LL    P + F   L R GI+LYG   T +++    ++  +   AR+
Sbjct: 253 VDVEHVHAANTGGLLTIGAPTHEFDASLVRSGIALYGLAATPELSARLDLRPAMRLAARV 312

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             ++   AG  +SYG Q +  R + IA   IGY DGYP   SG  S             I
Sbjct: 313 THLKTVPAGTPISYGAQWEAPRRTRIATLGIGYGDGYPRRCSGRASVR-----------I 361

Query: 303 KGYMVPILGKITMDMTMFDI-----TDSLSIEVGDYIQIFGPDIKLD-DVALASGTTNYD 356
            G   PI+G I MDM M D+       +  ++ GD   +FGP      DVA  S T  Y+
Sbjct: 362 GGASCPIVGTICMDMCMVDLGPPNEAPATRVDRGDEAVLFGPAGPTAYDVAQWSDTIPYE 421

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + +
Sbjct: 422 ILCGVSPRVPRRH 434


>gi|167565411|ref|ZP_02358327.1| alanine racemase [Burkholderia oklahomensis EO147]
          Length = 374

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 175/363 (48%), Gaps = 29/363 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+  N   +   +  +R  +VVK NAYG G E+I PAL +A      +  ++E V
Sbjct: 8   RIHPDAVARNLAIVRQKAPRSRIWSVVKANAYGHGIERIYPALADA--DGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ- 127
           ++R       I +L GI    +  I D + + V +    QLT    L S   + P  +Q 
Sbjct: 66  RVRELGWTKPILLLEGIFEAADVEIADRHRLTVAVHGDEQLTL---LTSAKTARPIDIQL 122

Query: 128 -VDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +++G NRLG         +   +    +G ++L++ H A AD+        Q+  F  +
Sbjct: 123 KMNSGMNRLGYRPGAFRAAWERAAAAPSIGDIALVM-HFANADEGEI---DWQMRAFDAV 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEAR 241
                G E +L++S+ +L  P  H    RPG  LYG +      H    P+Q  +T  ++
Sbjct: 179 TDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHLADVPLQPAMTVTSK 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++   AGE V YG +    R+  I V A GYADGYP         H+P+   G    
Sbjct: 238 IIGVQTLAAGETVGYGRRFTAEREMRIGVVACGYADGYP--------RHAPT---GTPIA 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+LL  +
Sbjct: 287 VDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGAQVRVDDVAEAAGTIGYELLCAL 346

Query: 362 GTR 364
             R
Sbjct: 347 ARR 349


>gi|327394099|dbj|BAK11521.1| alanine racemase, catabolic DadB [Pantoea ananatis AJ13355]
          Length = 356

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 182/364 (50%), Gaps = 32/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +   +  +R  +VVK NAYG G  ++  +L  +    F + ++EE + 
Sbjct: 9   IDQQALRHNLAIVRRAAPTSRVWSVVKANAYGHGIARVWESL--SATDGFALLNMEEAIL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL--Q 127
           LR    +  I +L G  HP    +I    L   + S  Q+     L +  +S P  L  +
Sbjct: 67  LREQGWKKPILLLEGFFHPDDLALIDRYRLTTSVHSNWQI---HALANATLSAPVDLYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG   ++     H     + +G ++L+ +H A A++P   V     E  + + 
Sbjct: 124 INSGMNRLGFRPEQVNGIWHKLRALENVGDITLM-AHFADAENPDGIV-----EPLKRIA 177

Query: 187 SHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240
              +G+++  SL++S+  L  P  H+   RPGI LYG +   N     S  ++ V+T  +
Sbjct: 178 QATEGLDSPVSLSNSACTLWHPEAHYDWVRPGIILYGASPSGNWQDIASSGLKPVMTLSS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II +++  AG+ V YG +   T+   I V A GYADGYP         H+P+   G   
Sbjct: 238 EIIGVQQLQAGDGVGYGYRYHATQPQRIGVVACGYADGYP--------RHAPT---GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G M  ++G ++MDM   D+T      +G  ++++G ++K+D VA A+GT  Y+L+  
Sbjct: 287 AVDGIMTQVVGAVSMDMITVDLTPCPQAGIGSSVELWGENVKIDQVAKAAGTVGYELMCA 346

Query: 361 IGTR 364
           +  R
Sbjct: 347 LAPR 350


>gi|254519968|ref|ZP_05132024.1| alanine racemase [Clostridium sp. 7_2_43FAA]
 gi|226913717|gb|EEH98918.1| alanine racemase [Clostridium sp. 7_2_43FAA]
          Length = 385

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 188/381 (49%), Gaps = 39/381 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L  N   +   SGN+    VVK NAYG G  +I+  L N G+    V ++ E +
Sbjct: 10  EINLNNLIYNIDQIKKKSGNSEIIGVVKANAYGHGAVEISKVLLNHGINRLAVANIVEAI 69

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQ 127
           +LR    +A I +L GI        + + ++ P IS+    +   +K  +   +    + 
Sbjct: 70  ELRENEIKAPIMLL-GISEDYAIDALLEYDVEPTISTYEFAMNLNNKANALNKTVNIHIA 128

Query: 128 VDTGFNRLGLS-----LQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
           +D+G  R+G       L++ ++ +      KL  L +  I SH + AD      +  QLE
Sbjct: 129 MDSGMGRIGFRKNDKGLEDIINIS------KLSNLKIESIFSHFSTADSKDKSYSLRQLE 182

Query: 181 RFRTLISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PM 232
            + T +   +  G+   + +L++S+ I+  P  H+   RPGI  YG   +D+++K+H  +
Sbjct: 183 IYNTFLDKLQEAGVYINKKNLSNSAAIIDLPESHYDYVRPGIIQYGYYPSDEVDKNHFDI 242

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T + +II I++    E + YG   K +R +++A   +GYADGY   LS        
Sbjct: 243 KHVLTWKTKIIHIKEVEENEYIGYGQTFKTSRKTVVATLPVGYADGYSRGLSN------- 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                GK  I G + PI+G + MD  M DITD  ++ +G+ + + G D       DD+A 
Sbjct: 296 ----KGKVIINGQLAPIIGNVCMDQFMVDITDIENVHLGNEVILLGSDGNVKFDADDIAK 351

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            + T +Y++L  IG R  + Y
Sbjct: 352 LTNTISYEVLCLIGRRAPRIY 372


>gi|78049364|ref|YP_365539.1| alanine racemase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|123584116|sp|Q3BNX4|ALR_XANC5 RecName: Full=Alanine racemase
 gi|78037794|emb|CAJ25539.1| Alanine racemase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 365

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 183/366 (50%), Gaps = 26/366 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLARRLGGS-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V ++  Q+   ++  S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATQQQVRALAEFQSPRPLRVW-LKMD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           +     E SL +S G+L  P      +RPG+ LYG          +  ++ V+T  +RII
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTENTAQLRPVMTLRSRII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG +    R + + V A+GYADGYP        + +P+   G    + 
Sbjct: 241 SVRELPAGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLVD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  +  
Sbjct: 290 GQICPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVSALAAQCNVSAYQLLCGL-K 348

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 349 RVPRIY 354


>gi|225849897|ref|YP_002730131.1| alanine racemase [Persephonella marina EX-H1]
 gi|225644813|gb|ACO02999.1| alanine racemase [Persephonella marina EX-H1]
          Length = 359

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 181/371 (48%), Gaps = 35/371 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEG 68
           +ID   L  N H++   S      AVVK +AYG G  +I+  L     V+   V + EEG
Sbjct: 8   EIDSKRLIQNTHNVYNYSKKG-ILAVVKADAYGHGSVEISKILEKISYVRKLCVATAEEG 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            +LR    +  I VL G+   +     + NL PVIS   QL       S  V     L+ 
Sbjct: 67  KELREGGIKKEILVLGGVLKEELDYFIEYNLQPVISDFDQLYLLKDRFSGSVH----LKF 122

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRTLIS 187
           DTG +RLG  +++  D       +K  ++  ++SH   AD DP   +   Q+E+F+ ++ 
Sbjct: 123 DTGMHRLGFYIEDT-DRVIKYIKEKNIKVEGLMSHFPSADVDP--ELTGHQIEKFKKIVD 179

Query: 188 HYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
            +K  GI      + +S+G++   +Y     R GISLYG     N    ++TV++ +++I
Sbjct: 180 IFKNEGINPRFIHIQNSAGLVYRCDY-CNCVRVGISLYGEKPSDNFPLNIKTVMSVKSKI 238

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF- 301
           I ++    G++VSYGG  K  +D  I + + GYADG P  LS              +GF 
Sbjct: 239 ISVKGIKKGDMVSYGGSFKADKDMKIGIVSFGYADGLPRELS-------------NRGFF 285

Query: 302 -IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
            +K     ILG +TMDMT+ D++    ++VGD + I G     +I  +D+A    T  Y+
Sbjct: 286 LVKDKRSRILGNVTMDMTIIDLSGIEDVKVGDTVLIVGKNGKEEISFNDIAKMCNTIPYE 345

Query: 357 LLVRIGTRYAK 367
           ++ RI  R  +
Sbjct: 346 IMCRISKRVKR 356


>gi|255523385|ref|ZP_05390354.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|296184669|ref|ZP_06853080.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|255512843|gb|EET89114.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|296050451|gb|EFG89874.1| alanine racemase [Clostridium carboxidivorans P7]
          Length = 386

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 177/376 (47%), Gaps = 27/376 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL  L  N  S+   S +     VVK +AYG G  ++AP L   G     V  + EG
Sbjct: 10  VEVDLDNLTYNMKSIRKKSKSKELIGVVKADAYGHGALEVAPVLLENGATRLAVAVLSEG 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126
           ++LR       I +L G+ P      + + ++ P ++S    +  SK            +
Sbjct: 70  IELRKSGISCHIMIL-GLTPNTLMDDLLEYDIEPAVTSYEYASELSKAAQAKDKVAKIHV 128

Query: 127 QVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            VDTG  R+G L  +++++  +        ++  + SH   AD+     +  Q E++   
Sbjct: 129 AVDTGMGRIGFLPNEDSIEEVYKISKLPNIEIESLFSHFCTADELDKDYSHKQFEKYNYF 188

Query: 186 IS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVT 237
                 KG++ ++   A+S+ I+  P  H++  RPGI LYG    T+   K   ++ V+T
Sbjct: 189 CEKLQEKGVKINMRDIANSAAIMELPETHYEGARPGIILYGYYPSTEVDKKMLDIKPVMT 248

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +A I+ I+    GE + YG + +  R S+IA   +GYADGY   LSG            
Sbjct: 249 WKADIMHIKTLEKGEYIGYGRKFRTERKSVIATLPVGYADGYTRMLSG-----------K 297

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            K  I G   P++G I MD  M DIT+   ++VGD + + G D      +DD+A   GT 
Sbjct: 298 AKVIINGKFAPVVGNICMDQCMIDITEIEDVKVGDEVILMGSDGTLKFDVDDMAPMLGTI 357

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+LL  I  R  + Y
Sbjct: 358 NYELLCMISKRVPRVY 373


>gi|77461745|ref|YP_351252.1| alanine racemase [Pseudomonas fluorescens Pf0-1]
 gi|77385748|gb|ABA77261.1| alanine racemase, catabolic [Pseudomonas fluorescens Pf0-1]
          Length = 365

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 191/375 (50%), Gaps = 36/375 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     ++G A+  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 13  RALIDLQALRHNYRIAREVTG-AKALAVIKADAYGHGAVRCAQAL-EAEADGFAVACIEE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A + +L G     E  +I + +   V+ S+ QL     +    +S P   
Sbjct: 71  ALELRAAGIRAPVLLLEGFFEADELALIVEHDFWCVVHSLWQL---EAIEQTTLSKPITV 127

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLS--LIISHLACADDPSSHVNSVQLE 180
            L++D+G +R+GL  +   D+   ++ + L  G ++  +++SH A AD+     ++ Q+ 
Sbjct: 128 WLKLDSGMHRVGLHPK---DYP-AAYQRLLASGNVAKVVLMSHFARADELHEQSSADQVA 183

Query: 181 RFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINK-SHPMQTV 235
            F    +  +G+  E SL +S  +L  P  H    RPGI LYG T  ++ N  +  +Q V
Sbjct: 184 VFE---AARQGLAAEVSLRNSPAVLGWPQIHSDWVRPGIMLYGATPFEEANAVAERLQPV 240

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+++I +R+  AGE V YG +    +   I V A+GYADGYP          +P+  
Sbjct: 241 MTLESKVISVRELPAGEPVGYGAKFITDKPMRIGVVAMGYADGYP--------RQAPT-- 290

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ILG+++MDM   D+TD     +G  ++++G +I   DVA  + T  Y
Sbjct: 291 -GTPVLVAGQRSRILGRVSMDMLCIDLTDVPQAGLGSTVELWGKNILASDVAKWADTIPY 349

Query: 356 DLLVRIGTRYAKFYT 370
            +   +  R  + Y+
Sbjct: 350 QIFCNL-RRVPRLYS 363


>gi|91775684|ref|YP_545440.1| alanine racemase [Methylobacillus flagellatus KT]
 gi|122985541|sp|Q1H1N8|ALR_METFK RecName: Full=Alanine racemase
 gi|91709671|gb|ABE49599.1| alanine racemase [Methylobacillus flagellatus KT]
          Length = 357

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 180/368 (48%), Gaps = 39/368 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N + +   +  +R  AVVK +AYG G  ++AP L  A    F V  +EE + 
Sbjct: 8   IDLGALRHNLNLVRQRAPGSRVLAVVKADAYGHGLLRVAPGLAEA--DGFGVLRLEEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    + R+ +L GI    E        +  V+ +  QL  +  + +  V  P +  L+
Sbjct: 66  LREAGYRQRLLLLEGIFSMDELGAAAQHGISVVVHNAQQLAMFEAMAAASVK-PISVFLK 124

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSHVNSVQL 179
           +++G NRLG        F   ++ + L +L          +++H A AD+     +  QL
Sbjct: 125 MNSGMNRLG--------FKSQAYKQALQRLEACPVVADVSLMTHFATADEERGIAD--QL 174

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVV 236
           + F  + + +     SLA+S+ IL  P  H    RPGI LYG +        S  ++  +
Sbjct: 175 KEFDAVTAGWHH-PVSLANSAAILRFPEAHRDWVRPGIILYGASPVSGVSAASFGLRPAM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              + +I ++   AG+++ YG +   T+ + +A+ A GYADGYP         H+P+   
Sbjct: 234 RFTSEVIAVQTLEAGDILGYGARFTATQATRVAIVACGYADGYP--------RHAPN--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    I G+    LG+++MDM   DI+     +VG  ++++G  + +D VA A+GT  Y+
Sbjct: 283 GTPIAIDGHRTQTLGRVSMDMLFADISQLPDADVGSQVELWGEVVPVDAVAEAAGTVGYE 342

Query: 357 LLVRIGTR 364
           LL  +  R
Sbjct: 343 LLCAVAPR 350


>gi|22294181|dbj|BAC08012.1| alanine racemase [Thermosynechococcus elongatus BP-1]
          Length = 412

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 178/384 (46%), Gaps = 31/384 (8%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           H  E   ++IDL AL  N  S+   L+      AVVK +AYG G   +A  +   G    
Sbjct: 40  HECERAWIEIDLAALAANTRSLRQWLAPTTELLAVVKADAYGHGALTVAQTVLAHGATWL 99

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V ++ EG+ LR     A I VL  ++ P Q +++    L P +S+  Q   +S      
Sbjct: 100 GVATIPEGIALRQAGITAPILVLGSVNLPVQVQMMAQWQLQPTLSTPKQALIFSDYAD-R 158

Query: 120 VSHP--YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVN 175
           +  P    L +DTG +RLG   Q+A+ F    F ++L  L +  I SH A ADDP + + 
Sbjct: 159 LREPLDVHLMIDTGMSRLGCPWQDAVGFVQ--FVQRLPHLRIQGIYSHFASADDPDASLM 216

Query: 176 SVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
             Q   F  +           +   +A+S+  L   + H+ + R G+SLYG      +  
Sbjct: 217 RQQQAYFEQVWEQISALGLGPVRRHMANSAATLANRSSHYDMVRIGLSLYGVYPASHLRG 276

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             P++ V+   +RI L+++  AG  +SYG Q    +   IAV  IGYADG P  LS    
Sbjct: 277 VVPLRPVMQVRSRITLLKEIPAGTGISYGHQFIAPQPMKIAVVGIGYADGVPRLLS---- 332

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
            +   V + GK   +      +G ITMD  M D++D   ++ GD + + G D    + ++
Sbjct: 333 -NKLEVLVQGKRLRQ------VGAITMDQLMIDVSDMDGLQEGDVVTLLGEDGGDCLTVE 385

Query: 345 DVALASGTTNYDLLVRIGTRYAKF 368
             A A GT  +++L     R  + 
Sbjct: 386 TWAEALGTITWEILCGFKNRLPRI 409


>gi|161485772|ref|NP_681250.2| alanine racemase [Thermosynechococcus elongatus BP-1]
          Length = 383

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 178/384 (46%), Gaps = 31/384 (8%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           H  E   ++IDL AL  N  S+   L+      AVVK +AYG G   +A  +   G    
Sbjct: 11  HECERAWIEIDLAALAANTRSLRQWLAPTTELLAVVKADAYGHGALTVAQTVLAHGATWL 70

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V ++ EG+ LR     A I VL  ++ P Q +++    L P +S+  Q   +S      
Sbjct: 71  GVATIPEGIALRQAGITAPILVLGSVNLPVQVQMMAQWQLQPTLSTPKQALIFSDYAD-R 129

Query: 120 VSHPYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVN 175
           +  P    L +DTG +RLG   Q+A+ F    F ++L  L +  I SH A ADDP + + 
Sbjct: 130 LREPLDVHLMIDTGMSRLGCPWQDAVGFVQ--FVQRLPHLRIQGIYSHFASADDPDASLM 187

Query: 176 SVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
             Q   F  +           +   +A+S+  L   + H+ + R G+SLYG      +  
Sbjct: 188 RQQQAYFEQVWEQISALGLGPVRRHMANSAATLANRSSHYDMVRIGLSLYGVYPASHLRG 247

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             P++ V+   +RI L+++  AG  +SYG Q    +   IAV  IGYADG P  LS    
Sbjct: 248 VVPLRPVMQVRSRITLLKEIPAGTGISYGHQFIAPQPMKIAVVGIGYADGVPRLLS---- 303

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
            +   V + GK   +      +G ITMD  M D++D   ++ GD + + G D    + ++
Sbjct: 304 -NKLEVLVQGKRLRQ------VGAITMDQLMIDVSDMDGLQEGDVVTLLGEDGGDCLTVE 356

Query: 345 DVALASGTTNYDLLVRIGTRYAKF 368
             A A GT  +++L     R  + 
Sbjct: 357 TWAEALGTITWEILCGFKNRLPRI 380


>gi|94986479|ref|YP_594412.1| alanine racemase, catabolic [Lawsonia intracellularis PHE/MN1-00]
 gi|166969415|sp|Q1MSD5|ALR_LAWIP RecName: Full=Alanine racemase
 gi|94730728|emb|CAJ54090.1| alanine racemase, catabolic [Lawsonia intracellularis PHE/MN1-00]
          Length = 380

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 178/376 (47%), Gaps = 36/376 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +KI L  L+ N   + +   N     V+K NAYG G   +A  L + GVQ   V S+ EG
Sbjct: 8   IKIHLERLRYNLRILRSRYPN--VMPVIKANAYGHGIRVVANVLRDEGVQHMAVGSITEG 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQL---TFYSKLMSCGVSHPY 124
             LR    QA +  L G    ++ +I    N+ PVI ++  L     YS++   G + P 
Sbjct: 66  FLLRQEGHQAFLLALLGPFSEEDARIAVVHNITPVIHNIESLQSIVHYSRVHQGGTAVPV 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF- 182
           A+++DTG  RLG S  + +       +       L++SHL   +  S  +V   Q+E+F 
Sbjct: 126 AIKIDTGMGRLGFSSNDYISLIDLLRHTPEVNPILLLSHLVAPEISSLDNVTHNQVEQFA 185

Query: 183 ---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQT 234
              + +   +  I+ SL +S G+L  PNY    +RPGI+LYG     GT +++       
Sbjct: 186 RAYKAIKEAFPTIKTSLTNSPGLLAWPNYIGDFSRPGIALYGGNPFYGTSRVSLGKGFLP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  EA ++ I    AG  + YG       D  +AV   GYADGY  + S          
Sbjct: 246 VMEVEAPVVAINTVSAGSSIGYGCTYYAKEDIRVAVIGAGYADGYSRSFS---------- 295

Query: 295 FLGGKGF--IKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPD----IKLDDVA 347
               KG+  IKG    I+G++ M M M DIT+S S I +GD   + G      IK +++A
Sbjct: 296 ---NKGWVVIKGKRYRIVGRVCMQMLMVDITNSHSKISIGDKAFLLGGGGSLAIKPEELA 352

Query: 348 LASGTTNYDLLVRIGT 363
              GT  +++   +G+
Sbjct: 353 EWWGTIPHEVCCSLGS 368


>gi|148244756|ref|YP_001219450.1| alanine racemase [Candidatus Vesicomyosocius okutanii HA]
 gi|226711067|sp|A5CWE3|ALR_VESOH RecName: Full=Alanine racemase
 gi|146326583|dbj|BAF61726.1| alanine racemase [Candidatus Vesicomyosocius okutanii HA]
          Length = 351

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 179/363 (49%), Gaps = 28/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I  +ALK+N   +   S N++  ++VK NAYG     I P + ++ +    V+ + E 
Sbjct: 7   VSISQSALKHNLLVVKENSPNSKIVSMVKANAYGHKINLINPIINHSDL--LAVSEISEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL- 126
            KLR  T +  I +L G+   QE +     N   V+    Q+T  +         P  + 
Sbjct: 65  KKLRKITKKP-ILLLSGVIEDQELQQAIKLNCQIVVHDKTQITTIN-----NTKQPINIW 118

Query: 127 -QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +++TG +RLGLS  E  D      N  L     ++SH ACAD+ +  +N  QL  F+  
Sbjct: 119 IKINTGMHRLGLSTHEYFDCIKLLANNPLINTQCVMSHFACADEINHPMNQSQLFEFKK- 177

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEARIIL 244
            S Y   + S+A+S+ IL  P  HF   RPGI LYG +  +I  +H ++ V+   A I+ 
Sbjct: 178 -STYHTTKRSMANSAAILSNPASHFDYVRPGIMLYGVSPFEIINNH-LKPVMQISAPIMS 235

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           I+    G+ V YG      + + IA   IGY DGYP         H+ +   G    I  
Sbjct: 236 IKTIQTGDSVGYGATWIAKKSTTIATIGIGYGDGYP--------RHAKN---GTPVLINN 284

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT 363
            + P++G+++MD+   DI++ +   VGD + ++G   ++++ +A  S T  Y+LL  I +
Sbjct: 285 NLCPLIGRVSMDLICVDISN-VKASVGDNVILWGAQKLRIETIAKYSDTIAYELLTGISS 343

Query: 364 RYA 366
           R A
Sbjct: 344 RVA 346


>gi|325282969|ref|YP_004255510.1| Alanine racemase [Deinococcus proteolyticus MRP]
 gi|324314778|gb|ADY25893.1| Alanine racemase [Deinococcus proteolyticus MRP]
          Length = 370

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 182/380 (47%), Gaps = 51/380 (13%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAV--VKDNAYGLGCEKIAP-ALYNAGVQDFFVTS 64
           R  I   AL+ N   +  LSG A    +  +K NAYG G E +AP A  +  V    V +
Sbjct: 18  RALISARALRGN---LKFLSGKAGVPLLWPMKANAYGHGVEAVAPVAAESEAVWGMAVAT 74

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI----PVISSVPQLTF--YSKLMSC 118
             E ++L          VL+G++  +  ++F  +       ++++  QLT   Y++  + 
Sbjct: 75  PAEALELS--------SVLHGLNCPKPVVLFGASFPDEWPALVAAGVQLTVSTYAEAAAL 126

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L+V+TG NRLG S  EA+        ++ GQL+ + SH + A++    ++  Q
Sbjct: 127 PSGARAHLKVNTGMNRLGASPAEAVAVGRRL--QERGQLAGVFSHFSEAEEADQTLSRQQ 184

Query: 179 LERFRTLISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYG-----GTDKINKSHPM 232
              F+ +  H+      + +SS +L LGP     L RPG+S YG     GT ++  +   
Sbjct: 185 FRTFQEVARHFPEALHHMGNSSAVLNLGPLPGMDLARPGLSSYGVMPSPGTPELTPA--- 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              +T +ARI  +  A AGE VSY G   L RD+LIA   IGYADGYP   +G       
Sbjct: 242 ---MTLQARITYLHTAAAGERVSYNGLTTLQRDTLIATLPIGYADGYPRRATG-----QA 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVA 347
            V L G+        P+LG++ MD  M D T  L +  GD++ ++G D     + + +VA
Sbjct: 294 EVLLAGE------RRPVLGRVCMDQLMVDAT-GLDVSTGDWVTLWGQDAGGRELHVSEVA 346

Query: 348 LASGTTNYDLLVRIGTRYAK 367
             S    Y++L R+  R  +
Sbjct: 347 QWSEMAEYEILTRLSVRVER 366


>gi|298489912|ref|YP_003720089.1| alanine racemase ['Nostoc azollae' 0708]
 gi|298231830|gb|ADI62966.1| alanine racemase ['Nostoc azollae' 0708]
          Length = 395

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 173/376 (46%), Gaps = 29/376 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL  N   +   LS   +  AVVK +AYG G   +A  +  AG     V +V E
Sbjct: 28  VEIDLGALSYNVKQLVIFLSSRTQLMAVVKADAYGHGSVTVAKTVLEAGASCLGVATVPE 87

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHP 123
           G++LR    +A I +L   H   Q   I    L P + S  Q    S  +         P
Sbjct: 88  GIQLREGGIKAPILILGATHTLEQIHAIAQWKLQPTLCSPKQALEVSNTLEAINYNSPIP 147

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++DTG +RLG + QEA DF           ++ + SHLA AD P   +   Q  RF 
Sbjct: 148 VHIKLDTGMSRLGTNWQEAGDFVQLVQGLPHLDIASVYSHLATADSPDPAIMQQQHNRFE 207

Query: 184 TLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTV 235
             I+  K  GI+     LA+S+  L  P  H+ + R G+++YG    T   NK   +Q V
Sbjct: 208 QAIAQIKARGIKIPSLHLANSAATLADPKLHYDMVRAGLAIYGLYPATHLENKIK-LQPV 266

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +AR+  ++   AG  VSYG Q    R+  IAV  IGYADG P +LS           
Sbjct: 267 LQLKARVTHVKTIAAGTGVSYGHQFIAPREMRIAVVGIGYADGVPRSLSN---------- 316

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
              +  ++G  V  +G ITMD  M D++    ++ G+ + + G      I  DD A    
Sbjct: 317 -QMQVLLRGQRVHQIGTITMDQIMLDVSSIPDLQEGEIVTLLGEQGQEQISADDWANQLN 375

Query: 352 TTNYDLLVRIGTRYAK 367
           T ++++L     R  +
Sbjct: 376 TISWEILCAFKHRLPR 391


>gi|88703618|ref|ZP_01101334.1| alanine racemase [Congregibacter litoralis KT71]
 gi|88702332|gb|EAQ99435.1| alanine racemase [Congregibacter litoralis KT71]
          Length = 359

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 165/359 (45%), Gaps = 22/359 (6%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75
           L++N   +   +  +R  A VK +AYG G    + AL N  V  F V  + E + LR   
Sbjct: 14  LRHNARRVREEAPRSRIMACVKADAYGHGITTASEAL-NDIVDGFAVACISEALALRDAG 72

Query: 76  PQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQVDTGF 132
            +  + +L G   P +       +L   ++   QL +  K    G+S P A  L++DTG 
Sbjct: 73  IKKPVLMLEGPQSPDEVPEAAHKDLTLCVNEWHQLEWLEK---AGLSAPLACWLKIDTGM 129

Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI 192
           +RLG S Q   +       K      ++ +H + AD P  +    Q+  F   ++     
Sbjct: 130 HRLGFSPQRTAEALQRLERKAKNPELVLCTHFSSADLPKDNGVEAQVRAFDE-VAATTAY 188

Query: 193 EASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKAL 249
             SLA+S+ IL  P  H    RPG  LYGG+   D    +  ++  +   A +I +R   
Sbjct: 189 AHSLANSAAILTIPESHRHWVRPGYMLYGGSPLADAAAATLNLKPAMEFVAEVISVRDVS 248

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
            GE V Y G+ +  R S IA  A GY DGYP         H+P    G   FI G + P+
Sbjct: 249 VGERVGYRGRWEARRPSRIATVAAGYGDGYP--------RHAPD---GTPVFINGKVAPL 297

Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
            G+++MDM   D+T+   I VG    ++G +  +D+VA A+ T  Y++L  +  R  + 
Sbjct: 298 AGRVSMDMITVDVTEHPDIAVGAKAVLWGGEPTVDEVATAADTIGYEILAGMPKRVPRV 356


>gi|330812573|ref|YP_004357035.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380681|gb|AEA72031.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 357

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/378 (30%), Positives = 191/378 (50%), Gaps = 42/378 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     ++G A+  AV+K +AYG G  + A AL +     F V  +EE
Sbjct: 5   RALIDLQALRHNYQLAREITG-AKALAVIKADAYGHGAVRCAEALQDTA-DGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +  I +L G     E  +I + +   V+ S+ QL    K     +S P   
Sbjct: 63  ALELRAGGIRGPILLLEGFFEASELPLIVEHDFWCVVHSLWQLEAIEK---AALSQPITV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACAD---DPSSHVNSV 177
            L++D+G +R+GL      D+   ++ + L  G+++ I+  SH A AD   DPSS     
Sbjct: 120 WLKLDSGMHRVGL---HPADY-QAAYRRLLASGKVAKIVLMSHFARADELHDPSSTEQLA 175

Query: 178 QLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT--DKINK-SHPM 232
             ++ R      +G+ A  SL +S  +L  P       RPGI LYG T  D+ N  +  +
Sbjct: 176 IFDKAR------QGLVAQISLRNSPAVLGWPQIPSDWVRPGIMLYGATPFDEPNAVASRL 229

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q V+T E++II +R+  AGE V YG +   T+ + + V A+GYADGYP          +P
Sbjct: 230 QPVMTLESKIICVRELPAGEPVGYGARFVTTQPTRVGVVAMGYADGYP--------RQAP 281

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
           +   G    + G    ++G+++MDM   D+T+     +G  ++++G +I   DVA A+ T
Sbjct: 282 T---GTPVLVDGQRSQLVGRVSMDMLCVDLTNVPQAGLGSTVELWGKNILASDVAKAADT 338

Query: 353 TNYDLLVRIGTRYAKFYT 370
             Y +   +  R  + Y+
Sbjct: 339 IPYQIFCNL-RRVPRLYS 355


>gi|317121110|ref|YP_004101113.1| alanine racemase [Thermaerobacter marianensis DSM 12885]
 gi|315591090|gb|ADU50386.1| alanine racemase [Thermaerobacter marianensis DSM 12885]
          Length = 394

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 168/375 (44%), Gaps = 25/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A+ +N  ++  L+  A+  AVVK + YG G   +A      G +   V  VEEG
Sbjct: 15  VEVDLDAIAHNVQTLQRLAAPAQLMAVVKADGYGHGAVMVARTALAHGARRLAVAVVEEG 74

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR       I V+    P Q  +    +L + V S              G      L+
Sbjct: 75  VHLRQSAIACPILVMGWTPPWQYSLALRYDLELAVSSEDEARALAEAARREGRKVRVHLK 134

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTL 185
           VDTG  RLGL           +    LG L +  + +HLA ADDP + +   QL RF  +
Sbjct: 135 VDTGMGRLGLRWDHPRLAETAARIAGLGGLEVVGVFTHLATADDPEAPLTEDQLARFARI 194

Query: 186 ISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           +     +G+   L   A+S+ +L  P   + L RPGI+LYG         +  ++  +  
Sbjct: 195 VHALDERGLRPLLRHAANSAALLRLPGARYDLVRPGIALYGLEPFPGAVAAFGLRPALAW 254

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           + R+ L+++   G  +SYG      R S IA   +GYADG    LS             G
Sbjct: 255 KTRVALVKEVPPGTPISYGATFVTRRRSRIATLPVGYADGLRRALSNR-----------G 303

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354
           +  + G   PI+G++ MD  M D+TD+  + VGD + + G      I  D++A    T  
Sbjct: 304 QVLVGGRRAPIVGRVCMDQVMVDVTDAGPVAVGDEVVLIGRQGDQQITADEMAGWMDTIG 363

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  IG R  + Y
Sbjct: 364 YEVVTGIGRRVPRIY 378


>gi|134288204|ref|YP_001110367.1| alanine racemase [Burkholderia vietnamiensis G4]
 gi|134132854|gb|ABO59564.1| alanine racemase [Burkholderia vietnamiensis G4]
          Length = 365

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 169/356 (47%), Gaps = 47/356 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L+  ++  AVVK NAYG G E++ P L +A      +  +EE V++R    +  I +L G
Sbjct: 24  LTCGSQVWAVVKANAYGHGIERVFPGLSDA--DGIALLDLEEAVRVRALGWRKPILLLEG 81

Query: 86  I-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-----LQVDTGFNRLGL-- 137
           I  P    ++ +  L   +  V QL   S+      S P +     L++++G NRLG   
Sbjct: 82  IFEPADLNVVVEHRLTVAVHCVDQLHMLSR------SEPRSPIDIQLKMNSGMNRLGFRP 135

Query: 138 -----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI 192
                + +EA D +       +  + L+ +H A AD+        Q + F        G 
Sbjct: 136 DMYRQAWEEASDMS------SIANIGLM-THFANADEGEI---DWQTDVFDAATQGLPGT 185

Query: 193 EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIRKA 248
             SLA+S+G+L  P  H    RPG  LYG +      H    P++  ++ E++II I+  
Sbjct: 186 R-SLANSAGVLWHPQSHRDWVRPGTILYGTSPTGASRHVARFPLRAAMSLESQIIGIQSI 244

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
              E V YG     +R   I V A GYADGYP         H+P+   G    + G    
Sbjct: 245 SPSETVGYGRTFTGSRRMRIGVVACGYADGYP--------RHAPT---GTPVLVDGVRTQ 293

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           ++G+++MDM   D+T   S  +G  ++++G ++ +DDVA ASGT  Y+L+  +  R
Sbjct: 294 VVGRVSMDMMTVDLTPCPSANIGSRVELWGSNVSVDDVAEASGTIGYELICALARR 349


>gi|84622288|ref|YP_449660.1| alanine racemase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|123523220|sp|Q2P7U1|ALR_XANOM RecName: Full=Alanine racemase
 gi|84366228|dbj|BAE67386.1| alanine racemase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 366

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 178/357 (49%), Gaps = 27/357 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G    A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLAKRLGGS-KALAVVKADAYGHGAVPCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V ++  Q+   +   S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQSPRPLRVW-LKMD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVTAEARI 242
           +     E SL +S G+L  P      +RPG+ LYG      D  N +  ++ V+T  +RI
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQ-LRPVMTLRSRI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           IL+R    GE V YG +    R + + V A+GYADGYP        + +P+   G    +
Sbjct: 240 ILVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL 
Sbjct: 289 DGQVCPLIGRVSMDMLTVDLTDHPQADIGATVQLWGQAPRVGPLATQCNVSAYQLLC 345


>gi|118581006|ref|YP_902256.1| alanine racemase [Pelobacter propionicus DSM 2379]
 gi|118503716|gb|ABL00199.1| alanine racemase [Pelobacter propionicus DSM 2379]
          Length = 433

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 179/380 (47%), Gaps = 34/380 (8%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL+AL++N+  + +++S  A   AVVK +AYG G   I+  L   GV  F V  + E 
Sbjct: 66  EIDLSALRHNFQLIRSSVSPQAELLAVVKADAYGHGFMDISRELERLGVNAFGVAFLAEA 125

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY----SKLMSCGVSHPY 124
           ++LR       I +L G++PGQE+     N+  ++ ++ Q        +KL      H  
Sbjct: 126 IQLRKAGIDRPILLLGGVYPGQERKCIGYNISTIVFNLEQARALDRAAAKLFRKAQLH-- 183

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLER 181
            L+VDTG  RLG+   E   F           L  ++SH A AD   +   + + +Q ER
Sbjct: 184 -LKVDTGMGRLGIPYAEVPSFLRELAALPHISLEGVVSHFASADELNESGRYFSRLQAER 242

Query: 182 FRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQT 234
           F   ++  +    +     +A+S+  LL       L RPGI+LYG   +        ++ 
Sbjct: 243 FAWALAETRSAGFAPRYVHIANSAAGLLRDIPGCNLVRPGIALYGALPSPDFQGQLDLRP 302

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  ++RI +++    G  +SYG +      +LIA   +GYADGY   L+          
Sbjct: 303 VMRLKSRIAMLKWVEPGTPISYGRRFTTGGRTLIASVPVGYADGYVRALTNR-------- 354

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALA 349
              G+  ++G    + G + MD  M D+T    + VGD + + GPD     I  +++A A
Sbjct: 355 ---GEALVRGERARVAGTVCMDWIMLDVTGVKGVSVGDPVVLMGPDDSGNCIHAEELAEA 411

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +GT  Y++   I  R  + Y
Sbjct: 412 AGTIPYEIFCGISKRVPRVY 431


>gi|332161937|ref|YP_004298514.1| alanine racemase, catabolic [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605542|emb|CBY27040.1| alanine racemase, catabolic [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666167|gb|ADZ42811.1| alanine racemase, catabolic [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863879|emb|CBX73970.1| alanine racemase [Yersinia enterocolitica W22703]
          Length = 363

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 180/362 (49%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++L+AL +N + + +  G A+  +VVK NAYG G  ++   L  A    F +  + E + 
Sbjct: 9   LNLSALHHNLNVVRSHVGTAKIWSVVKANAYGHGLARVWQGL--AATDGFALLDLNEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    Q  I +L G    Q+ ++ D   L   + S  QL            + Y L+ +
Sbjct: 67  LREQGWQGPILLLEGFFQAQDLVLLDHYRLTTAVHSDWQLEVIKAARLTAPLNIY-LKFN 125

Query: 130 TGFNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLI 186
           +G NRLG  +   EA+    NS +  +G+++L+ SH A AD+P       VQ+++    I
Sbjct: 126 SGMNRLGFPIGQAEAVWQWANSLSN-VGEITLM-SHFANADNPIGVDEQFVQIQQASGHI 183

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
              +      A+S+ IL  PN H+   RPGI LYG +   + +      ++ V++  + I
Sbjct: 184 PAAR----CFANSAAILRNPNTHYDWVRPGIILYGASPSGDITDIAGLGLRAVMSLHSEI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++   AG+ V YG + + T    I V A GYADGYP          +P+   G    +
Sbjct: 240 IALQSLSAGQSVGYGSRYRATGSQRIGVVACGYADGYPRV--------APT---GTPIMV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G +   +G I+MDM   D+T     ++G  ++I+G ++ +D+VA A+GT  Y+L+  + 
Sbjct: 289 DGILTHTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVPIDNVAQAAGTVGYELMCALA 348

Query: 363 TR 364
           +R
Sbjct: 349 SR 350


>gi|58580317|ref|YP_199333.1| alanine racemase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|81311987|sp|Q5H522|ALR_XANOR RecName: Full=Alanine racemase
 gi|58424911|gb|AAW73948.1| alanine racemase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 366

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 178/357 (49%), Gaps = 27/357 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G    A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLAKRLGGS-KALAVVKADAYGHGAVPCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V ++  Q+   +   S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQSPRPLRVW-LKMD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVTAEARI 242
           +     E SL +S G+L  P      +RPG+ LYG      D  N +  ++ V+T  +RI
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQ-LRPVMTLRSRI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           IL+R    GE V YG +    R + + V A+GYADGYP        + +P+   G    +
Sbjct: 240 ILVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL 
Sbjct: 289 DGQVCPLIGRVSMDMLTVDLTDHPQADIGATVQLWGQAPRVGPLATQCNVSAYQLLC 345


>gi|21674734|ref|NP_662799.1| alanine racemase [Chlorobium tepidum TLS]
 gi|25452782|sp|Q8KB67|ALR_CHLTE RecName: Full=Alanine racemase
 gi|21647945|gb|AAM73141.1| alanine racemase [Chlorobium tepidum TLS]
          Length = 383

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 171/362 (47%), Gaps = 25/362 (6%)

Query: 11  IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L++N   + A++G   R   +VK NAYG G  ++   L   GV+DF V ++ E +
Sbjct: 23  ISLGNLRHNLACIRAITGPQCRVMGIVKANAYGHGATQVTATLEAEGVRDFGVANIYEAI 82

Query: 70  KL---RLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA 125
           +L       P +RI        G   +     + + V          S   +CG      
Sbjct: 83  ELLQEHRMLPDSRILAFASPLAGHIDLYLQHGVEMTVCDHETARAAESIAAACGRRLQVQ 142

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L+VDTG  RLG++ +EA +           +L+ I +H A +D P     + QLERF  +
Sbjct: 143 LKVDTGMGRLGVTPEEAAELLELIEACPNLELTGIYTHFAESDKPEG-FTARQLERFLHV 201

Query: 186 ISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTVVTA 238
              Y     K +    A+S  I+  P+    + RPGI LYG    D    + P++ V+  
Sbjct: 202 TGAYERRTGKTVTKHAANSGAIISMPDARLDMVRPGILLYGCHPVDAAPSTVPVRPVMQF 261

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++R+I +++  AG  +SY       + + IA  + GYADG+   LS     +   V +GG
Sbjct: 262 QSRVIFVKEVPAGTAISYNRTWSAPKATRIATISAGYADGFHRALS-----NQARVSIGG 316

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDL 357
           K F      P +G ITMD TM ++    S++VGD   +FG D     + ALA+GT +Y+L
Sbjct: 317 KSF------PQVGTITMDQTMVNLGSDDSVKVGDTAVLFGWDGPSAGEQALAAGTISYEL 370

Query: 358 LV 359
           L 
Sbjct: 371 LC 372


>gi|210631730|ref|ZP_03296972.1| hypothetical protein COLSTE_00857 [Collinsella stercoris DSM 13279]
 gi|210159850|gb|EEA90821.1| hypothetical protein COLSTE_00857 [Collinsella stercoris DSM 13279]
          Length = 383

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 176/381 (46%), Gaps = 34/381 (8%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+  AL+ N  +  +L G   R   VVK +AYG G    A  ++ AG   F V +V EG
Sbjct: 15  EINTGALRRNTRAFKSLIGARQRLCCVVKADAYGHGAASCAKVMHAAGADMFAVATVLEG 74

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYAL 126
           V LR    +  I +L     G    + + +++P + S P+  +    +  S G    Y +
Sbjct: 75  VALREAGQKLPILLLSEPPAGAIDALLEFDIMPSVYS-PEFAWAYGERAASLGKVGKYHM 133

Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            ++TG NR+G+   E +DF  +  F+  L Q     +H A AD+P    + +Q +RF   
Sbjct: 134 AINTGMNRIGVHYTEVVDFRRSVDFHAGL-QCDGTFTHFATADEPDGWDHQLQCKRFSEA 192

Query: 186 ISHYK--GIEASLA---SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           ++  +  G +  +    ++ G +L P  HF + R GI LYG    ++     P++ V++ 
Sbjct: 193 VACLRDAGFDPGIVHCDNTPGSILNPAMHFDMIRAGIGLYGLQPCERTRAVLPLEPVMSI 252

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
           +AR+        GE V YG   ++ R  + I    IGYADG P  LS     +   V   
Sbjct: 253 KARVTHTCHPAMGEGVGYGFTYRVPRTRVEICTLPIGYADGLPRVLS-----NRMEVLFN 307

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDS-----LSIEVGDYIQIFGPD----IKLDDVAL 348
           G+   +      +G I MD  M  I+++        EVGD + I G D    I LD++A 
Sbjct: 308 GRRMRQ------VGNICMDQCMVAISENPMHPVPEAEVGDLMTIVGRDGDAQITLDELAS 361

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY+L    G R  K Y
Sbjct: 362 MCQTINYELACGFGMRLEKIY 382


>gi|182682437|ref|YP_001830597.1| alanine racemase [Xylella fastidiosa M23]
 gi|182632547|gb|ACB93323.1| alanine racemase [Xylella fastidiosa M23]
 gi|307578720|gb|ADN62689.1| alanine racemase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 362

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 23/365 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  +EE ++
Sbjct: 8   IDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQAL-EAEVDGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    QA I +L G    +E ++I   NL  VI+S  Q+   +   S      + L++D
Sbjct: 66  LRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGVW-LKLD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLGL  +E  D   +  +  ++G++ ++++HLA AD+  +   + Q   F    S 
Sbjct: 125 SGMHRLGLEPKEFRDAWMSLHSLPQVGEV-VLMTHLARADELDNPRTNEQASVF-AHASQ 182

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIIL 244
                AS+ +SSG+L     +    RPG+ LYG      +  + S P++ V+   +++I 
Sbjct: 183 GMVAPASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVYSKLIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  AGE V YG      R + + V A+GYADGYP                G    + G
Sbjct: 243 VRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPLLVDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL  +  R
Sbjct: 292 RVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCGL-KR 350

Query: 365 YAKFY 369
             ++Y
Sbjct: 351 VRRYY 355


>gi|28199693|ref|NP_780007.1| alanine racemase [Xylella fastidiosa Temecula1]
 gi|31076596|sp|Q87AK1|ALR_XYLFT RecName: Full=Alanine racemase
 gi|28057814|gb|AAO29656.1| alanine racemase [Xylella fastidiosa Temecula1]
          Length = 365

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 23/365 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  +EE ++
Sbjct: 11  IDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQAL-EAEVDGFAVACIEEALE 68

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    QA I +L G    +E ++I   NL  VI+S  Q+   +   S      + L++D
Sbjct: 69  LRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGVW-LKLD 127

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLGL  +E  D   +  +  ++G++ ++++HLA AD+  +   + Q   F    S 
Sbjct: 128 SGMHRLGLEPKEFRDAWMSLHSLPQVGEV-VLMTHLARADELDNPRTNEQASVF-AHASQ 185

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIIL 244
                AS+ +SSG+L     +    RPG+ LYG      +  + S P++ V+   +++I 
Sbjct: 186 GMVAPASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVYSKLIA 245

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  AGE V YG      R + + V A+GYADGYP                G    + G
Sbjct: 246 VRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPLLVDG 294

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL  +  R
Sbjct: 295 RVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCGL-KR 353

Query: 365 YAKFY 369
             ++Y
Sbjct: 354 VRRYY 358


>gi|71899103|ref|ZP_00681267.1| Alanine racemase [Xylella fastidiosa Ann-1]
 gi|71731097|gb|EAO33164.1| Alanine racemase [Xylella fastidiosa Ann-1]
          Length = 369

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 23/365 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  +EE ++
Sbjct: 15  IDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQAL-EAEVDGFAVACIEEALE 72

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    QA I +L G    +E ++I   NL  VI+S  Q+   +   S      + L++D
Sbjct: 73  LRQVGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGVW-LKLD 131

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLGL  +E  D   +  +  ++G++ ++++HLA AD+  +   + Q   F    S 
Sbjct: 132 SGMHRLGLEPKEFRDAWMSLHSLPQVGEV-VLMTHLARADELDNPRTNEQASVF-AHASQ 189

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIIL 244
                AS+ +SSG+L     +    RPG+ LYG      +  + S P++ V+   +++I 
Sbjct: 190 GMVAPASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVYSKLIA 249

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  AGE V YG      R + + V A+GYADGYP                G    + G
Sbjct: 250 VRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPLLVDG 298

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL  +  R
Sbjct: 299 RVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCGL-KR 357

Query: 365 YAKFY 369
             ++Y
Sbjct: 358 VRRYY 362


>gi|91200113|emb|CAJ73156.1| similar to alanine racemase [Candidatus Kuenenia stuttgartiensis]
          Length = 374

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 177/376 (47%), Gaps = 30/376 (7%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL+AL++N   +    G N +   VVK NAYG G  +I   L   GV+   +  +EEG
Sbjct: 8   EIDLSALRHNLQEIRRRIGANIKILGVVKANAYGHGDYEIGALLVKNGVEMLGIAILEEG 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM----SCGVSHPY 124
           V LR     + + +  G    Q   I   NL P   +V  LT   KL     S G +   
Sbjct: 68  VHLREKGITSPLLLFGGFFEEQIDAIIHYNLTP---TVYDLTLAEKLAHHAHSAGKTVNV 124

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            + +DTG    G+    A +   +        +  I +H + ADD  S     Q+  F+ 
Sbjct: 125 HVYIDTGMGGTGVRHDVAFECIKHLTGMNGLVIEGIYTHCSSADDNDSTNTERQIRNFKD 184

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237
           +I+     GI   L   A++  IL   + +F + RPG+SLYG   +DK +++  ++ V++
Sbjct: 185 IIAKLDTAGIIIPLKHMANTGSILRYNDSYFTMARPGLSLYGLHVSDKESRNLSVKPVMS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + RII I+    GE + YGG  K+TR + +A   +GY DGY   LS             
Sbjct: 245 LKTRIIHIKTMEPGETLGYGGSYKITRTTRVATLPLGYDDGYNRLLSNQ----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G+  ++G  VP++G+I MD    D+T   ++ VGD + I+G      I ++ VA    T 
Sbjct: 294 GRVIVRGNKVPVIGRICMDQCFIDVTTIKNVSVGDEVVIYGRQGKETISIESVAEQRKTI 353

Query: 354 NYDLLVRIGTRYAKFY 369
            Y++   +  R  + Y
Sbjct: 354 PYEITCNVSYRVPRIY 369


>gi|71275083|ref|ZP_00651370.1| Alanine racemase [Xylella fastidiosa Dixon]
 gi|170731066|ref|YP_001776499.1| alanine racemase [Xylella fastidiosa M12]
 gi|71163892|gb|EAO13607.1| Alanine racemase [Xylella fastidiosa Dixon]
 gi|167965859|gb|ACA12869.1| Alanine racemase [Xylella fastidiosa M12]
          Length = 369

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 23/365 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  +EE ++
Sbjct: 15  IDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQAL-EAEVDGFAVACIEEALE 72

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    QA I +L G    +E ++I   NL  VI+S  Q+   +   S      + L++D
Sbjct: 73  LRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGVW-LKLD 131

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLGL  +E  D   +  +  ++G++ ++++HLA AD+  +   + Q   F    S 
Sbjct: 132 SGMHRLGLEPKEFRDAWMSLHSLPQVGEV-VLMTHLARADELDNPRTNEQASVF-AHASQ 189

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIIL 244
                AS+ +SSG+L     +    RPG+ LYG      +  + S P++ V+   +++I 
Sbjct: 190 GMVAPASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVYSKLIA 249

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  AGE V YG      R + + V A+GYADGYP                G    + G
Sbjct: 250 VRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPLLVDG 298

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL  +  R
Sbjct: 299 RVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCGL-KR 357

Query: 365 YAKFY 369
             ++Y
Sbjct: 358 VRRYY 362


>gi|226950848|ref|YP_002805939.1| alanine racemase [Clostridium botulinum A2 str. Kyoto]
 gi|226841311|gb|ACO83977.1| alanine racemase [Clostridium botulinum A2 str. Kyoto]
          Length = 386

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 178/377 (47%), Gaps = 31/377 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV    V  + E +
Sbjct: 11  EIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSRLAVAVLSEAM 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           +LR+   +  I +L         ++ D ++   + S       SK+    V     L+  
Sbjct: 71  ELRMSGVKEPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKI---AVLKRKILKIH 127

Query: 128 --VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
             VDTG  R+G L  +E+++  +        ++  + SH + AD+        Q+ ++  
Sbjct: 128 IVVDTGMGRIGFLPTKESVEDVYKISKLPNIEIEGVFSHFSSADESDKDYTLYQMNKYNA 187

Query: 185 LIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
            I+    K I+  +   A+S+ I+   N H    R GI +YG       +  +  ++ V+
Sbjct: 188 FINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRNNINLKPVM 247

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +  I+ I+K  +GE +SYGG  K  R+S+IA   IGYADGY   LS            
Sbjct: 248 SLKTSIVHIKKVSSGEYISYGGTFKTKRESIIATLPIGYADGYNRLLSN----------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
            GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D+A   GT
Sbjct: 297 KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAEDIASQIGT 356

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y+++  +  R  + Y
Sbjct: 357 ISYEVICNVNKRVPRVY 373


>gi|330828532|ref|YP_004391484.1| alanine racemase [Aeromonas veronii B565]
 gi|328803668|gb|AEB48867.1| Alanine racemase [Aeromonas veronii B565]
          Length = 357

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 177/362 (48%), Gaps = 24/362 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+  AL++N   +   +   +  AVVK NAYG G   +A  L +A    + V  +EE +
Sbjct: 7   QINTAALRHNLAVVKRHAPACKIIAVVKANAYGHGLLPVARTLVDADA--YAVARIEEAL 64

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR       I +L G     +  ++   NL   + +  QL     L    +  P    L
Sbjct: 65  MLRSCAVVKPIVLLEGFFSADDLPVLAANNLQTAVHTWEQL---EALEQVELPAPVVAWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG+   E   F       K + Q   I++H + +D+        Q++ F  L
Sbjct: 122 KLDTGMHRLGVRADEMPAFIERLGKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSKL 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARI 242
            +   G E ++A+S+GIL  P+ H    RPG+ LYG +   + I   + +Q V+T + ++
Sbjct: 182 TAPLAG-ERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTIAADYDLQPVMTLKTQL 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YG      RD+ + V AIGY DGYP          +P+   G    I
Sbjct: 241 IAVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYP--------RMAPN---GTSVLI 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G +VP++G+++MDM+  D+    + + GD   ++G  + ++ VA   GT  Y+L+ ++ 
Sbjct: 290 NGRIVPLVGRVSMDMSTVDLGPGATDKPGDEAVLWGEGLPVERVADEIGTIPYELITKLT 349

Query: 363 TR 364
           +R
Sbjct: 350 SR 351


>gi|21244412|ref|NP_643994.1| alanine racemase [Xanthomonas axonopodis pv. citri str. 306]
 gi|23813646|sp|Q8PGD0|ALR_XANAC RecName: Full=Alanine racemase
 gi|21110074|gb|AAM38530.1| alanine racemase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 366

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 180/357 (50%), Gaps = 27/357 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLAKRLGGS-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V ++  Q+   ++  S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRVW-LKLD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVTAEARI 242
           +     E SL +S G+L  P      +RPG+ LYG      D  N +  ++ V+T  +RI
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQ-LRPVMTLRSRI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YG +    R + + V A+GYADGYP        + +P+   G    +
Sbjct: 240 ISVRELPAGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            G + P+ G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL 
Sbjct: 289 DGQVCPLAGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVGALAAQCNVSAYQLLC 345


>gi|194289835|ref|YP_002005742.1| alanine racemase [Cupriavidus taiwanensis LMG 19424]
 gi|226711038|sp|B3R2F9|ALR_CUPTR RecName: Full=Alanine racemase
 gi|193223670|emb|CAQ69677.1| alanine racemase 2, PLP-binding [Cupriavidus taiwanensis LMG 19424]
          Length = 373

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 162/361 (44%), Gaps = 22/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   + +AR  AVVK NAYG G  ++  AL   G   F +  + E V 
Sbjct: 9   IHQPALANNLDVIRRKAPDARVWAVVKANAYGHGIRRVFAALR--GADGFGLLDLNEAVL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           LR    Q  I +L G   P    +I    L   I    QL     L S     P A+Q+ 
Sbjct: 67  LRDLGWQGPILLLEGFFQPQDIALIEQYRLTTAIHCDEQLRM---LESARPKGPLAIQLK 123

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            +TG NRLG    E       +         + ++H + AD P    +  Q+E F    +
Sbjct: 124 LNTGMNRLGFHPAEYRAAWERARAMPCVGSIVHMTHFSDADGPRGIAH--QVEAFDAATA 181

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARII 243
           +  G EASL++S+ +L  P  H    RPGI LYG    G D       +Q  ++  + +I
Sbjct: 182 NLPG-EASLSNSAAVLWHPQAHRAWVRPGIILYGASPTGRDADIAGTGLQPAMSLHSELI 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            ++    G+ V YG      R   I V A GYADGYP   SG   + +P         + 
Sbjct: 241 AVQDLQPGDTVGYGSLFTAERPMRIGVVACGYADGYPRHASGWGEQRAPV-------LVD 293

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ++G+++MDM   D+T      VG  + ++G  + +D+VA ASGT  Y+L+  +  
Sbjct: 294 GVRTELVGRVSMDMLCVDLTPCPKARVGSPVTLWGQGLPIDEVAQASGTVGYELMCALAP 353

Query: 364 R 364
           R
Sbjct: 354 R 354


>gi|297201785|ref|ZP_06919182.1| alanine racemase [Streptomyces sviceus ATCC 29083]
 gi|297147954|gb|EFH28798.1| alanine racemase [Streptomyces sviceus ATCC 29083]
          Length = 389

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 168/382 (43%), Gaps = 34/382 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N  ++ A +  A   AVVK +AYG G    A A   AG +     + EE
Sbjct: 15  RAEIDLAALRANVRALRARASGAALMAVVKSDAYGHGAVPCARAAVEAGARWLGTATPEE 74

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR      RI        G  +   + +L   +S +  L    +     GV     L
Sbjct: 75  ALALRKAGLPGRIMCWLWTPGGPWREAIEADLDVSVSGMWALRELVAAAREAGVPARVQL 134

Query: 127 QVDTGFNRLGLSLQEALDFTH------NSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + DTG  R G   Q   D+         + ++ L +++ + SH ACAD+P     + QL 
Sbjct: 135 KADTGLGRNG--CQPGEDWAELVAEALRAQSEGLLRVTGLWSHFACADEPGHPSITAQLT 192

Query: 181 RFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---- 231
            FR +++H +G         +A+S   L  P  HF L R GI+ YG +       P    
Sbjct: 193 LFREMLAHAEGRGVRPEVRHIANSPATLTLPESHFDLVRTGIATYGISPSPELGVPGDFG 252

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T  A I L+++   G  VSYG +     D+ + +  +GYADG P   SG      
Sbjct: 253 LRPVMTLSASIALVKRVPGGHGVSYGHRYVTPGDTTLGLVPVGYADGIPRHASG------ 306

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   + G    + G+I MD  + D+        G    +FGP    +   +D A
Sbjct: 307 -----AGPVLVDGKWRTVAGRIAMDQFVVDLGGD-EPPTGTRAVLFGPGDRGEPTAEDWA 360

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
            A+GT  Y+++ RIGTR  + Y
Sbjct: 361 QAAGTIAYEIVTRIGTRVPRVY 382


>gi|124024027|ref|YP_001018334.1| alanine racemase [Prochlorococcus marinus str. MIT 9303]
 gi|123964313|gb|ABM79069.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9303]
          Length = 398

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 175/377 (46%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  A++ N  S+   L  +    AVVK + YG G   +A A    G +   V +++E
Sbjct: 31  VEVNPAAVEANCRSLRRHLCESCALMAVVKADGYGHGAVTVARAALQGGAKSLGVATLQE 90

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR     A + VL  + H    K      L+P +SS+ ++     L    G      
Sbjct: 91  GIELRQAGHNAPVLVLGNLTHSEDLKACLHWQLMPTLSSMREVLLCQNLADGSGRQFRIQ 150

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD----PSSHVNSVQLER 181
           L++DTG  RLG  L+EA        +    +L  I SHLA AD      ++ V   Q + 
Sbjct: 151 LKIDTGMTRLGCELKEAPRLVEAIDHLNQLELKGIYSHLALADGDLQGEAAMVTDQQQQH 210

Query: 182 F----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235
           F    RTL   + G    LA+S+G L     H+ + R G++LYG +   ++     +Q  
Sbjct: 211 FEAVLRTLPEQHNGFMRHLANSAGTLRDRGLHYDMVRVGLALYGHSPNLQLQGKVDLQPA 270

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ +AR+ LIR   AG  VSYG +    R S +AV  IGYADG   +LSG  S       
Sbjct: 271 LSVKARVTLIRDVPAGVGVSYGHRFTTRRPSRLAVVGIGYADGVSRSLSGQIS------- 323

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                  +G ++P +G ITMD  + D T+   +EVG  + + G D    I     +  SG
Sbjct: 324 ----AIAEGQLLPQVGAITMDQLVLDATNHPDLEVGSIVTLLGQDGDACITPQQWSDLSG 379

Query: 352 TTNYDLLVRIGTRYAKF 368
           +  +++L     R  + 
Sbjct: 380 SIPWEVLCSFKHRLPRL 396


>gi|289665503|ref|ZP_06487084.1| alanine racemase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 366

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 180/357 (50%), Gaps = 27/357 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLAKQLGGS-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V ++  Q+   ++  S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRVW-LKMD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVTAEARI 242
           +     E SL +S G+L  P      +RPG+ LYG      D  N +  ++ V+T  +RI
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFRQDTENTAQ-LRPVMTLRSRI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+   GE V YG +    R + + V A+GYADGYP        + +P+   G    +
Sbjct: 240 ISVRELPVGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL 
Sbjct: 289 DGKVCPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVSPLAAQCNVSAYQLLC 345


>gi|116075736|ref|ZP_01472995.1| alanine racemase [Synechococcus sp. RS9916]
 gi|116067051|gb|EAU72806.1| alanine racemase [Synechococcus sp. RS9916]
          Length = 410

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 167/346 (48%), Gaps = 28/346 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++   A+++N  ++  L        AVVK + YG G   +A A    G     V +++E
Sbjct: 45  LEVSPAAIESNARALRRLLKPTCALMAVVKADGYGHGATTVARAAVQGGAAQLGVATLQE 104

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G+ LR    +  I VL  +  P   +      L+P +SS+ +      L   G    +A+
Sbjct: 105 GIDLRRAGLEQPILVLGNLTQPDDLRACLQWQLMPTLSSMREALLCQNLAD-GSGRQFAV 163

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACAD-DPS---SHVNSVQ 178
           Q+  DTG NRLG + ++A   T     ++L QL L  I SHLA AD DP      V  +Q
Sbjct: 164 QLKLDTGMNRLGCAWEDAPRLT--EAIQQLNQLHLCGIYSHLALADGDPEGDGDRVTRLQ 221

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234
             RF  ++ H    +A   LA+S+G L  P  H  L R G++LYG +    ++ + P+Q 
Sbjct: 222 QTRFNEVLHHLPEHQALHHLANSAGTLRDPGLHHDLVRVGLALYGHSPSPHLDAAVPLQP 281

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  +AR+ LIR+   G  VSYG +    R S +AV  IGYADG    LSG  +      
Sbjct: 282 AMGVKARVTLIREVGTGVGVSYGHRFVTQRPSRLAVVGIGYADGVSRCLSGKIT------ 335

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                   +G+ +  +G ITMD  + D TD   ++ GD + + G D
Sbjct: 336 -----ALHRGHSLLQVGAITMDQLILDATDHPDLDSGDVVTLLGRD 376


>gi|239906401|ref|YP_002953142.1| alanine racemase [Desulfovibrio magneticus RS-1]
 gi|239796267|dbj|BAH75256.1| alanine racemase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 172/381 (45%), Gaps = 38/381 (9%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            + +LR +I    +  N+  + A  G  +  +V+K +AYG G  + A AL  AG + F V
Sbjct: 4   EHNYLRTRIRTENIVANYTRLRAQGG--QVVSVIKADAYGHGLLETATALAGAGCESFAV 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118
            S  EG  LR     A I  L G + P  E +I + NL+P +    QL   +  ++C   
Sbjct: 62  GSAAEGAALRDAGCTAEILSLLGPVLPEDELLIIEKNLVPFMHDFDQLARLA--VACTRL 119

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSV 177
           G     AL+ DTG  RLG    +A             ++ ++ SHLA ADDP +    + 
Sbjct: 120 GRVAKVALKFDTGMARLGFVEADAPKLAEMLCASPCIEVVMVSSHLATADDPGAFEFVAE 179

Query: 178 QLERFRTLISHYK----GIEASLASSSGILL-GPNYHFQLTRPGISLYG-----GTDKIN 227
           Q  RF  +    +       ASL +S+GIL       F   R GI+LYG     G+ +  
Sbjct: 180 QGARFARICQALRHGGLTFRASLCNSAGILAHAGAIGFDARRAGIALYGVNPFAGSAREA 239

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             H +   +    RI+ +     G  +SYG      RD  +A+ A GYAD Y   LS   
Sbjct: 240 LGHGLLPAMETVTRIVSVHDLPRGASISYGRTYVAERDMRVAIVAAGYADAYSRGLS--- 296

Query: 288 SEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
                      KGF  + G  VPILG++ M +T  D++   ++  GD I + G +    +
Sbjct: 297 ----------NKGFMCLAGRRVPILGRVCMQLTAVDVSGLDAVRPGDAIHLLGGEGPGAV 346

Query: 342 KLDDVALASGTTNYDLLVRIG 362
             DD+AL  GT  Y++   +G
Sbjct: 347 TADDLALWWGTIPYEVFCLLG 367


>gi|148238739|ref|YP_001224126.1| alanine racemase [Synechococcus sp. WH 7803]
 gi|147847278|emb|CAK22829.1| Alanine racemase [Synechococcus sp. WH 7803]
          Length = 393

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 186/378 (49%), Gaps = 32/378 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++   A+++N  ++  L +      AVVK + YG G E +A A    G     V +++E
Sbjct: 28  MEVSAQAVESNARALRQLLAPGCALMAVVKADGYGHGAETVARAAICGGATSLGVATLQE 87

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G++LR    +  + VL  +   ++ +      L+P +SS+ +      L S G    +A+
Sbjct: 88  GIELRRAGLELPVLVLGNLIQVEDLRACLHWQLMPTLSSMREALLCQNLAS-GSGRRFAV 146

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADD-PS---SHVNSVQ 178
           Q+  DTG  RLG   Q+    T     ++L QL L  + SHLA AD  PS     +  +Q
Sbjct: 147 QLKLDTGMTRLGCDWQDGSRLTQAI--QQLDQLILRGVYSHLALADGGPSGDAERITRLQ 204

Query: 179 LERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQT 234
            ERF  +   ++   ++  LA+S+G L   + H    R G++LYG   ++ +N++ P++ 
Sbjct: 205 QERFEAVTRAHRSDNLQFHLANSAGTLRDRSLHHDQVRVGLALYGHAPSEHLNQTVPLEP 264

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  +AR+ LIR   AG  VSYG +   +R S +AV  IGYADG    LSG       +V
Sbjct: 265 AMGVKARVSLIRDVPAGVGVSYGHRFVTSRPSRLAVVGIGYADGVSRCLSG-----QIAV 319

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G+       +P +G ITMD  M D TD  +++VGD + + G D    I   D A  S
Sbjct: 320 LHAGR------RLPQVGAITMDQLMVDATDHPTLDVGDVVTLLGSDGDAVIHPQDWAELS 373

Query: 351 GTTNYDLLVRIGTRYAKF 368
            +  +++L     R  + 
Sbjct: 374 DSIPWEVLCSFKHRLPRL 391


>gi|125975179|ref|YP_001039089.1| alanine racemase [Clostridium thermocellum ATCC 27405]
 gi|256003157|ref|ZP_05428149.1| alanine racemase [Clostridium thermocellum DSM 2360]
 gi|281418399|ref|ZP_06249418.1| alanine racemase [Clostridium thermocellum JW20]
 gi|125715404|gb|ABN53896.1| alanine racemase [Clostridium thermocellum ATCC 27405]
 gi|255992848|gb|EEU02938.1| alanine racemase [Clostridium thermocellum DSM 2360]
 gi|281407483|gb|EFB37742.1| alanine racemase [Clostridium thermocellum JW20]
 gi|316939345|gb|ADU73379.1| alanine racemase [Clostridium thermocellum DSM 1313]
          Length = 391

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 175/361 (48%), Gaps = 48/361 (13%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ-EKI 93
           VVK +AYG G  +IA  L   GV    V+ ++E ++LR    +  I +L    P + E+I
Sbjct: 39  VVKADAYGHGVMEIARTLLENGVTRLAVSMLDEAIQLRQNGIKVPILILSYTDPVRAEEI 98

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSH----PYALQVDTGFNRLGLSLQEALDFTHNS 149
           + +     V  +V        L    V H       +++DTG  R+G            S
Sbjct: 99  VLND----VTQTVFSHDLAEALSEAAVKHHRNVKIHIKIDTGMTRVGF-------MPGYS 147

Query: 150 FNKKLGQLS----LII----SHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SL 196
             K + Q+S    +II    +H A AD+       +Q ERF +++     I        +
Sbjct: 148 AVKNVVQISKLPGIIIEGLFTHFASADEADKSYTYMQFERFMSIVGELNRIGVYIPVKHV 207

Query: 197 ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVVTAEARIILIRKALAGEL 253
            +S+ ++  P  H  + RPGI+LYG   +D+++K+   ++  ++ +A +IL++       
Sbjct: 208 CNSAALIEFPEMHLNMVRPGIALYGLYPSDEVDKTKIDLRPAMSLKANVILVKDVEKDTF 267

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           +SYG   K +R+S IA   IGYADGY   L+G            GK  + G + PI+G+I
Sbjct: 268 ISYGRIFKTSRNSRIATIPIGYADGYTRLLTG-----------KGKVLLNGQLAPIVGRI 316

Query: 314 TMDMTMFDITD-SLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKF 368
            MD  M DITD    ++VGD   + G     +IK++D+A + GT NY+L+  IG R  + 
Sbjct: 317 CMDQCMVDITDIEGDVKVGDEAVLIGKQKDNEIKVEDLAKSVGTINYELVSIIGKRIPRV 376

Query: 369 Y 369
           Y
Sbjct: 377 Y 377


>gi|15837454|ref|NP_298142.1| alanine racemase [Xylella fastidiosa 9a5c]
 gi|9105760|gb|AAF83662.1|AE003925_2 alanine racemase [Xylella fastidiosa 9a5c]
          Length = 365

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 184/366 (50%), Gaps = 25/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  +EE ++
Sbjct: 11  IDLDALRHNYRFARRLGGG-KALAVVKADAYGHGAVRCAQAL-EAEVDGFAVACIEEALE 68

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    QA I +L G    +E ++I   NL  VI+S  Q+   +   S      + L++D
Sbjct: 69  LRQAGIQAPILLLEGFFEAEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGVW-LKLD 127

Query: 130 TGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +G +RLGL  +E  D    S ++  ++G++ ++++HLA AD+  +   + Q   F    S
Sbjct: 128 SGMHRLGLEPKEFRD-AWMSLHRLPQVGEI-VLMTHLARADELDNPRTNEQASVFAQ-AS 184

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARII 243
                 AS+ +SSG+L     +    RPG+ LYG      +  + S P++ V+   +R+I
Sbjct: 185 QGMVAPASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPIPQESTSLSGPLRPVMMVYSRLI 244

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            + +  AGE V YG      R + + V A+GYADGYP                G    + 
Sbjct: 245 AVHELPAGEPVGYGACFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPLLVD 293

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL  +  
Sbjct: 294 GRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCGL-K 352

Query: 364 RYAKFY 369
           R  ++Y
Sbjct: 353 RVRRYY 358


>gi|259908277|ref|YP_002648633.1| Alanine racemase, catabolic [Erwinia pyrifoliae Ep1/96]
 gi|224963899|emb|CAX55402.1| Alanine racemase, catabolic [Erwinia pyrifoliae Ep1/96]
 gi|283478209|emb|CAY74125.1| dadX [Erwinia pyrifoliae DSM 12163]
          Length = 356

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 176/368 (47%), Gaps = 40/368 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL+ N       +G AR  +VVK NAYG G + +  +L       F + ++EE + 
Sbjct: 9   INRAALRQNLAIARYTAGGARLWSVVKANAYGHGIDHVWQSLNE--TDGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    +  I +L G  HP   +I+    L   + S  Q+   + L    +S P    L+
Sbjct: 67  LRERGWKKPILLLEGFFHPDDLQILDRYRLTTSVHSNWQI---NALAQAKLSAPIDIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +++G NRLG   +      H  + K      +G+L+L+ +H A A+           E  
Sbjct: 124 MNSGMNRLGFQPER----VHGVWQKLRSLENVGELTLM-AHFADAESAEGVA-----EPL 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVV 236
           + +    +G+E   SLA+S+  L  P  H+   RPGI LYG    G  +      +Q V+
Sbjct: 174 KRIEQAAEGLECPRSLANSAATLWHPQTHYDWVRPGIILYGASPSGQWQDIAGSGLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + +I +++  AG  V YG + +      I V A GYADGYP         H+P+   
Sbjct: 234 TLTSEVIAVQQLAAGSGVGYGSRYRANCSQRIGVVACGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G    I+G ++MDM   D+T  L   +G  ++++G ++K+DDVA ASGT  Y+
Sbjct: 283 GTPIRVDGEKTQIVGAVSMDMITVDLTPCLQAGIGSQVELWGDNVKIDDVASASGTVGYE 342

Query: 357 LLVRIGTR 364
           L+  +  R
Sbjct: 343 LMCALAPR 350


>gi|157414132|ref|YP_001484998.1| alanine racemase [Prochlorococcus marinus str. MIT 9215]
 gi|157388707|gb|ABV51412.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9215]
          Length = 399

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 182/364 (50%), Gaps = 38/364 (10%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           LS N +  AVVK + YG   + ++      G     V +++EG+KLR +  +  I +L  
Sbjct: 48  LSKNCQFMAVVKADGYGHDAKVVSDYAIRGGASQLGVATLKEGIKLRSFGVKKPILILGN 107

Query: 86  IHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEAL 143
           ++  ++ II F  +L+P ISS+ +    + +    G+     L+VDTG +RLG    E+ 
Sbjct: 108 LYTKKDLIISFKNDLMPTISSIRECFICNNIGKHFGLKFSLHLKVDTGMSRLGF---ESN 164

Query: 144 DFTHNSFN-KKLGQLSL--IISHLACAD-----DPSSHVNSVQLERFRTLISHYK----- 190
            F       K L  +S+  I SHL+ AD     DP S +  +Q  +F  L+         
Sbjct: 165 KFVQQFEKIKSLENISIDGIYSHLSSADAENALDPQS-ITQLQRLKFNQLLKQINLDRNN 223

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKA 248
            I+  LA+S+G+LL  ++HF + R G+S+YG +   KI+K+  ++  +  + ++  IR  
Sbjct: 224 EIKIHLANSAGMLLNKDFHFNMVRVGLSMYGYSPLAKIDKNLLLKPALFLKVKVAFIRII 283

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVFLGGKGFIKGYMV 307
             G  VSYGG+   +R + +AV +IGYADG P  LSG ++  H+  ++            
Sbjct: 284 EPGVSVSYGGKFVSSRKTKLAVLSIGYADGVPRNLSGKINVIHNNKLY------------ 331

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGT 363
           P +G ITMD  M DIT S  I +G  + + G D    I   + A  S T  +++L     
Sbjct: 332 PQVGSITMDQMMVDITGSNEIRIGSTMVLLGSDGDKTISPLEWATKSNTIPWEILCSFKN 391

Query: 364 RYAK 367
           R  +
Sbjct: 392 RLPR 395


>gi|20137243|sp|Q9PF26|ALR_XYLFA RecName: Full=Alanine racemase
          Length = 362

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 184/366 (50%), Gaps = 25/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  +EE ++
Sbjct: 8   IDLDALRHNYRFARRLGGG-KALAVVKADAYGHGAVRCAQAL-EAEVDGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    QA I +L G    +E ++I   NL  VI+S  Q+   +   S      + L++D
Sbjct: 66  LRQAGIQAPILLLEGFFEAEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGVW-LKLD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +G +RLGL  +E  D    S ++  ++G++ ++++HLA AD+  +   + Q   F    S
Sbjct: 125 SGMHRLGLEPKEFRD-AWMSLHRLPQVGEI-VLMTHLARADELDNPRTNEQASVFAQ-AS 181

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARII 243
                 AS+ +SSG+L     +    RPG+ LYG      +  + S P++ V+   +R+I
Sbjct: 182 QGMVAPASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPIPQESTSLSGPLRPVMMVYSRLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            + +  AGE V YG      R + + V A+GYADGYP                G    + 
Sbjct: 242 AVHELPAGEPVGYGACFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPLLVD 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL  +  
Sbjct: 291 GRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCGL-K 349

Query: 364 RYAKFY 369
           R  ++Y
Sbjct: 350 RVRRYY 355


>gi|325915922|ref|ZP_08178218.1| alanine racemase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537889|gb|EGD09589.1| alanine racemase [Xanthomonas vesicatoria ATCC 35937]
          Length = 368

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 183/366 (50%), Gaps = 26/366 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLDALRHNYRLAKRLGGS-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V+S+  Q+   ++  S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEQDELRLIAEHDLWTVVSTPQQVRALAEFQSPRPLRIW-LKLD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF         L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLHGLPQIASMVLMTHLARADELDCSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARII 243
           +     E S+ +S G+L  P      +RPG+ LYG     + +     ++ V+T  +RII
Sbjct: 181 AGGMRAETSIRNSPGLLGWPALRNDWSRPGLMLYGANPFPHDTELTTQLRPVMTLRSRII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YG +    R + + V A+GYADGYP        + +P+   G    + 
Sbjct: 241 SVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPMLVD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  +  
Sbjct: 290 GQVCPLIGRVSMDMLTVDLTDHPQADIGSGVQLWGDAPRVSPLATQCNVSAYQLLCGL-K 348

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 349 RVPRVY 354


>gi|325929301|ref|ZP_08190432.1| alanine racemase [Xanthomonas perforans 91-118]
 gi|325929312|ref|ZP_08190443.1| alanine racemase [Xanthomonas perforans 91-118]
 gi|325540323|gb|EGD11934.1| alanine racemase [Xanthomonas perforans 91-118]
 gi|325540334|gb|EGD11945.1| alanine racemase [Xanthomonas perforans 91-118]
          Length = 365

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 182/366 (49%), Gaps = 26/366 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLARRLGGS-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V ++  Q+   ++  S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRVW-LKMD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           +     E SL +S G+L  P      +RPG+ LYG          +  ++ V+T  +RII
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTENTAQLRPVMTLRSRII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG +    R + + V A+GYADGYP        + +P+   G      
Sbjct: 241 SVRELPAGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLAD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  +  
Sbjct: 290 GQICPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVSALAAQCNVSAYQLLCGL-K 348

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 349 RVPRIY 354


>gi|289668321|ref|ZP_06489396.1| alanine racemase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 366

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 180/357 (50%), Gaps = 27/357 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLAKQLGGS-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V ++  Q+   ++  S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRVW-LKMD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVTAEARI 242
           +     E SL +S G+L  P      +RPG+ LYG      D  N +  ++ V+T  +RI
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFRQDTENTAQ-LRPVMTLRSRI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+   GE V YG +    R + + V A+GYADGYP        + +P+   G    +
Sbjct: 240 ISVRELPVGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL 
Sbjct: 289 DGKVCPLIGRVSMDMLTVDLTDHPHADIGTPVQLWGDAPQVSPLAAQCNVSAYQLLC 345


>gi|302392182|ref|YP_003828002.1| alanine racemase [Acetohalobium arabaticum DSM 5501]
 gi|302204259|gb|ADL12937.1| alanine racemase [Acetohalobium arabaticum DSM 5501]
          Length = 375

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 179/383 (46%), Gaps = 27/383 (7%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           NEF R   ++++L  ++ N   + A +S +    AVVK +AYG G   +A A   AG   
Sbjct: 3   NEFNRPVWVEVNLENIRFNLKQIRARVSADTLVMAVVKADAYGHGAVPVARAAVEAGADR 62

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V   EEGV+LR    +  I +L  + P Q  ++    LIP +S +       ++ +  
Sbjct: 63  LAVGLPEEGVQLRNAGFEVPIQILGEVLPEQIPLLAKYGLIPTVSKLETAVELERINAQL 122

Query: 120 VS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            S     L+VDTG  RLG+   E + F     +    +L  +++H A AD+        Q
Sbjct: 123 ESRQKIHLKVDTGMGRLGVKPDEVVGFAQKLSSFPHLELEGLLTHFATADEADKEYTRQQ 182

Query: 179 LERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
            ++F   I      GI   +   A+S+ I+  P     L R GI LYG   +D++  S  
Sbjct: 183 WQKFNYAIECLEAAGIRIPVKHCANSAAIIDLPEMELDLVRAGIMLYGLRPSDEVGDSLQ 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +++V+  +ARI+ +++   G  +SYG        + IA   +GYADGY   LS       
Sbjct: 243 LKSVLNWKARIVYLKEVDKGCGISYGATYTTADKAEIATIPLGYADGYFRALSN------ 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DIKLDDVALA 349
                 G   I G   PI G++ MD  M D+T+   + VGD + + G   D ++  + LA
Sbjct: 297 -----KGDVLINGRRAPIRGRVCMDQFMVDVTEIPGVSVGDEVILIGKQDDKEVTAMELA 351

Query: 350 S--GTTNYDLLVRIGTRYAKFYT 370
              GT NY+++ +I  R  + Y 
Sbjct: 352 DLVGTINYEIISKITKRVPRIYV 374


>gi|119509533|ref|ZP_01628680.1| alanine racemase [Nodularia spumigena CCY9414]
 gi|119465722|gb|EAW46612.1| alanine racemase [Nodularia spumigena CCY9414]
          Length = 395

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 178/375 (47%), Gaps = 27/375 (7%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL +N   +   LS N +  AVVK +AYG G   +A     +G     V +V E
Sbjct: 28  VEIDLGALSHNVQQLVQFLSPNTQLMAVVKADAYGHGAVTVAQTAVESGAGWLGVATVPE 87

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHP 123
           G++LR    +A I +L   + P Q + I    L P + S  Q   +S ++     G   P
Sbjct: 88  GIQLREGGIKAPILILGASYTPEQIQAIAHWKLQPSLCSPKQAFIFSNILETINDGSPLP 147

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++DTG +RLG + +EA++F     N    +++ I SHLA ADD  +     Q  RF 
Sbjct: 148 VHIKLDTGMSRLGTNWKEAVEFVQLVQNLPHLEIASIYSHLATADDLDTTFMQEQHRRFE 207

Query: 184 TLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVV 236
             I+  K  GI      LA+S+  L     H+ + R G+++YG     +  H   ++ V+
Sbjct: 208 QAIAQIKSTGINPPCLHLANSAASLTNRALHYDIVRAGLAIYGLYPATHLQHTIHLKPVL 267

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             + R+  ++   AG  VSYG Q    ++  +AV  IGYADG P  LS            
Sbjct: 268 QLKTRVTQVKTIAAGTGVSYGQQFIAPQEMRLAVVGIGYADGVPRNLSQ----------- 316

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
             +  I+G  VP +G ITMD  M D++    ++ G+ + + G      I  +D A    T
Sbjct: 317 KMQVLIRGQRVPQVGTITMDQLMLDVSAIPDLQEGEIVTLLGEQGREQISANDWAEKLNT 376

Query: 353 TNYDLLVRIGTRYAK 367
            ++++L     R  +
Sbjct: 377 ISWEILCGFKHRLPR 391


>gi|71901892|ref|ZP_00683951.1| Alanine racemase [Xylella fastidiosa Ann-1]
 gi|71728346|gb|EAO30518.1| Alanine racemase [Xylella fastidiosa Ann-1]
          Length = 369

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 23/365 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  +EE ++
Sbjct: 15  IDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQAL-EAEVDGFAVACIEEALE 72

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    QA I +L G    +E ++I   NL  VI+S  Q+   +   S      + L++D
Sbjct: 73  LRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGVW-LKLD 131

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLGL  +E  D   +  +  ++G++ ++++HLA AD+  +   + Q   F    S 
Sbjct: 132 SGMHRLGLEPKEFRDAWMSLHSLPQVGEV-VLMTHLARADELDNPRTNEQASVF-AHASQ 189

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIIL 244
                AS+ +SSG+L     +    RPG+ LYG      +  + S P++ V+   +++I 
Sbjct: 190 GMVAPASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVYSKLIA 249

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  AGE V YG      R + + V A+GYADGYP                G    + G
Sbjct: 250 VRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPLLVDG 298

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL  +  R
Sbjct: 299 RVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLSGL-KR 357

Query: 365 YAKFY 369
             ++Y
Sbjct: 358 VRRYY 362


>gi|148265867|ref|YP_001232573.1| alanine racemase [Geobacter uraniireducens Rf4]
 gi|146399367|gb|ABQ28000.1| alanine racemase [Geobacter uraniireducens Rf4]
          Length = 384

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 177/382 (46%), Gaps = 38/382 (9%)

Query: 10  KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL AL++N++ +  A+   +   AVVK +AYG G   I+  L   GV  F V  + EG
Sbjct: 17  EIDLAALRHNYYQVKKAVPAGSGLLAVVKADAYGHGFMDISRELEALGVTAFGVAFLAEG 76

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHPY 124
           ++LR       I +L GI+PGQEK     N+   + S+ Q         KL      H  
Sbjct: 77  IQLRKSGIDRPILLLGGIYPGQEKKCVGFNISTAVFSLDQARVLDDVARKLYRKAKIH-- 134

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACA---DDPSSHVNSVQL 179
            L+VDTG  RLG+  +EA  F      KKL  L L  I SH A A   DD  S   + Q 
Sbjct: 135 -LKVDTGMGRLGIRYEEAPAFFREL--KKLKNLELEGIFSHFASADELDDEGSGYTARQT 191

Query: 180 ERFRTLISH--YKGIEASLA--SSSGILLGPNYHF-QLTRPGISLYGG--TDKINKSHPM 232
           E F  ++     +G   +    ++S      ++ F  L RPGI LYG   +        +
Sbjct: 192 EIFAAVLQEGTRQGFSPTFVHIANSAAAFSRDFPFCNLARPGIVLYGALPSADFQGKIDV 251

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+  ++R+ +++    G  +SY  +    + +L+A   +GYADGY   L+        
Sbjct: 252 KPVMRLKSRVAMLKWVEPGTSISYARRYVAGKKTLVASVPVGYADGYCRALTN------- 304

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVA 347
                G+  ++G    + G + MD  M D+TD   + VGD + + G D     I  +++A
Sbjct: 305 ----KGEALVRGQRARVAGTVCMDWIMLDVTDIAGVAVGDEVTLLGCDNQGNCIHAEELA 360

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             SGT  Y++   I  R  + Y
Sbjct: 361 AWSGTIAYEIFCGISKRVPRVY 382


>gi|297617945|ref|YP_003703104.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145782|gb|ADI02539.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680]
          Length = 379

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 181/392 (46%), Gaps = 42/392 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           MH       ++DL A+ +N   + N L G AR   VVK NAYG G  ++A      G + 
Sbjct: 2   MHLARPTWAEVDLGAVAHNLKELRNLLVGTARLMPVVKANAYGHGILEVARTCVEEGAEF 61

Query: 60  FFVTSVEEGVKLRLY-TPQARIFVL---------YGIHPGQEKIIFDTNLIPVISSVPQL 109
             V  ++E + L+     + RI VL           +  G     FD  L   +S V   
Sbjct: 62  LAVALLDEALLLKEAGINRPRILVLGATSEEGAQEAVKQGVRLTCFDRRLAEAVSRVA-- 119

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACAD 168
               KL   G  H   +++DTG  RLG    E        F +  G ++  I +H A AD
Sbjct: 120 ---CKLQKPGYIH---IKIDTGMGRLGFYPDERALADIEEFLRLPGLEVEGIFTHFAAAD 173

Query: 169 DPSSHVNSVQLERFRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG-- 221
                    QL RF   +     KG++  L   A+S+ ++  P+ H  L RPGIS+YG  
Sbjct: 174 AADKSYTEWQLRRFLDFVGELEQKGVKIPLKHAANSAALIDLPSAHLDLVRPGISVYGLW 233

Query: 222 GTDKI-NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
            +D++ N+   +   +   +RI++++    G  VSYG     TR + +A   IGYADGY 
Sbjct: 234 PSDEVANRCLNLIPAMRLLSRIVMLKDLPPGHAVSYGCTYITTRTTKVATVPIGYADGYS 293

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-P 339
             LSG    H+          ++G  V  +G+I MD  MFD+++   +  GD + +FG P
Sbjct: 294 RLLSG--KVHA---------VVRGKRVCGIGRICMDQCMFDVSEVEGVREGDEVILFGRP 342

Query: 340 D--IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  +  D++A   GT NY+++  +G R  + Y
Sbjct: 343 EDGVTADELASLIGTINYEIVCMLGPRIPRIY 374


>gi|282901702|ref|ZP_06309618.1| Alanine racemase region protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193465|gb|EFA68446.1| Alanine racemase region protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 391

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 176/376 (46%), Gaps = 29/376 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL NN   +   LS  ++  AVVK +AYG G   +A  +  AG     V +V E
Sbjct: 19  VEIDLGALSNNVKQLVGFLSPGSQLMAVVKADAYGHGAVTVATTVLAAGATWLGVATVTE 78

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHP 123
           G++LR    +A I +L   H P Q   I    L P + S  Q   +S L++        P
Sbjct: 79  GIQLREAGIKAPILILGATHTPEQIHAITSWQLEPTLCSPGQALIFSDLLNSIDYNYELP 138

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++DTG +RLG   Q+A +F           ++ + SH A AD P + +   Q  RF+
Sbjct: 139 VHIKLDTGMSRLGADWQQAGEFAQLVQGLPRLHIASVYSHFATADSPDTTIMEQQHGRFQ 198

Query: 184 TLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVV 236
             I+  + +        LA+S+  L     H+ + R G+++YG     ++ + +Q    +
Sbjct: 199 QAIAQIRAMGIKIPSLHLANSAATLGNKELHYDMVRAGLAIYGLYPAAHQRNHLQLRPAL 258

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVF 295
             +ARI  I+    G  VSYG +    R+  I V  IGYADG P +LS  +D        
Sbjct: 259 QVKARITHIKTISEGTGVSYGHKFIAPREMRIGVVGIGYADGVPRSLSNQMDV------- 311

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
                 ++G  V  +G ITMD  M DI+  + +E G+ + + G     +I  DD A    
Sbjct: 312 -----LVQGQRVKQIGMITMDQLMIDISSLVEVEEGEIVTLLGEQGEENITADDWANQLN 366

Query: 352 TTNYDLLVRIGTRYAK 367
           T +++++     R  +
Sbjct: 367 TISWEIICGFKDRLPR 382


>gi|33355854|gb|AAQ16274.1| serine racemase [Enterococcus faecalis]
 gi|77380201|gb|ABA71733.1| VanTG [Enterococcus faecalis]
          Length = 712

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 183/374 (48%), Gaps = 33/374 (8%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L  L++N +++  A+S      AVVK  AYG G  ++   L   GV  F V +++E
Sbjct: 347 LEINLNNLEHNVNTLQKAMSPKCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDE 406

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           G++LR Y   + I +L    P + K +    L   +        YS L++  G      +
Sbjct: 407 GIRLRKYGISSEILILGYTSPSRAKELCKYELTQTLIDYR----YSLLLNKQGYDIKAHI 462

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFR 183
           ++DTG +RLG S ++  D    +F+ K  +++ I +HL  AD    +     + Q+  F 
Sbjct: 463 KIDTGMHRLGFSTEDK-DKILAAFSLKHIKVAGIFTHLCAADSLEENDVAFTNKQIGSFY 521

Query: 184 TLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQT 234
            ++   K       +  + SS G+L  P       R G++LYG      DK      ++ 
Sbjct: 522 KVLDWLKSSGLNIPKVHIQSSYGLLNYPELECDYIRVGVALYGVLSSTNDKTKLELDLRP 581

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +A+++LIRK   GE V Y      TRDSLIA+  IGYADG+P  LS  +S     V
Sbjct: 582 VLSLKAKVVLIRKIKQGESVGYSRAFTATRDSLIAILPIGYADGFPRNLSCGNS----YV 637

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
            +GG+        PI+GKI MD    D+TD  +++ G    + G D    I    VA ++
Sbjct: 638 LIGGR------QAPIVGKICMDQLAVDVTDIPNVKTGSIATLIGKDGKEEITAPMVAESA 691

Query: 351 GTTNYDLLVRIGTR 364
            +   +LL R+G R
Sbjct: 692 ESITNELLSRMGHR 705


>gi|326204287|ref|ZP_08194146.1| alanine racemase [Clostridium papyrosolvens DSM 2782]
 gi|325985562|gb|EGD46399.1| alanine racemase [Clostridium papyrosolvens DSM 2782]
          Length = 389

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 182/383 (47%), Gaps = 39/383 (10%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I L  + +N   +  ++G NA    VVK +AYG G  ++A  L   G   F V+ ++E 
Sbjct: 11  EISLDNIAHNIREIRRITGKNAEIMGVVKADAYGHGVMEVAKTLLENGASRFAVSMLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR    +  I +L    P +   I + ++   V S         + +  G      ++
Sbjct: 71  IQLRREGIEVPILILGYTDPRRANEIIENDVTQSVFSHDLAQALSDEAVRQGKKVKIHIK 130

Query: 128 VDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
           +DTG +R+G      +++  ++ +      +L  + +  + +H A AD+ +    + Q E
Sbjct: 131 IDTGMSRIGFLPGYSAVKNVVEIS------RLPNIIIEGLFTHFATADEKNREYTNTQFE 184

Query: 181 RFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PM 232
           RF ++    + I   +     A+S+ I+  P  H  + RPGI LYG   +D +NK+   +
Sbjct: 185 RFMSICCELQRIGIHIPVKHCANSAAIIEYPEMHLDMVRPGIILYGMYPSDDVNKAKIDL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T +A +I++++      +SYG      R S IA   IGYADG+   LS        
Sbjct: 245 KPAMTLKANVIMVKEVEKNTSISYGRIFTTGRTSKIATIPIGYADGFNRMLSN------- 297

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGP----DIKLDDVA 347
                GK  I G   P++G++ MD  M DITD   ++EVGD + + G     +I  +DVA
Sbjct: 298 ----KGKVLINGEFAPVVGRVCMDQCMVDITDIGSNVEVGDEVVLIGAQGQNNITAEDVA 353

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
              G  NY+L+  +G R  + + 
Sbjct: 354 QTIGMINYELVCIVGKRIPRAFV 376


>gi|153939434|ref|YP_001392754.1| alanine racemase [Clostridium botulinum F str. Langeland]
 gi|152935330|gb|ABS40828.1| alanine racemase [Clostridium botulinum F str. Langeland]
 gi|295320733|gb|ADG01111.1| alanine racemase [Clostridium botulinum F str. 230613]
          Length = 386

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 181/382 (47%), Gaps = 41/382 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  L++N   +  + GN     V+K NAYG G  ++AP L   GV    V  + E +
Sbjct: 11  EIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEVAPTLLENGVSRLAVAVLSEAM 70

Query: 70  KLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ- 127
           +LR+   +  I +L G  PG    ++ D ++   + S       SK+    V     L+ 
Sbjct: 71  ELRMSGVKESIMIL-GYTPGALGDMLLDNDIEQSVYSYNDALELSKI---AVLKRKILKI 126

Query: 128 ---VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
              VDTG  R+G L  +E+++  +        ++  + SH + AD+        Q+ ++ 
Sbjct: 127 HIVVDTGMGRIGFLPTKESVEDVYKISKLPNIKIEGLFSHFSSADELDKDYTLYQMNKYN 186

Query: 184 TLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGG-------TDKINKSHP 231
             I+    K I+     +A+S+ I+   N H    R GI +YG         D IN    
Sbjct: 187 EFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRDNIN---- 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS       
Sbjct: 243 LKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN------ 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D+A
Sbjct: 297 -----KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAEDIA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT +Y+++  +  R  + Y
Sbjct: 352 SQIGTISYEVICNVNKRVPRVY 373


>gi|331268600|ref|YP_004395092.1| alanine racemase [Clostridium botulinum BKT015925]
 gi|329125150|gb|AEB75095.1| alanine racemase [Clostridium botulinum BKT015925]
          Length = 387

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 178/380 (46%), Gaps = 36/380 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L  N   +  +S +     +VK +AYG G   +AP L   G     V  + EGV
Sbjct: 11  EINLDNLAFNVKEIKKISSSKEIIGIVKADAYGHGALDVAPTLIENGATGLAVAVINEGV 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---- 125
           +LR    +  I VL    P     + DT L   I        Y+K +S GV+        
Sbjct: 71  ELRRGGIECPIMVLGFTAP----TLIDTLLRHDIEQTVFSLEYAKQLS-GVAEKMHKKIK 125

Query: 126 --LQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG  R+G L  +E++       N    ++  I +H + AD+ +      QL++F
Sbjct: 126 IHIAVDTGMGRIGFLPNKESVQDVKKISNLPNVEIKGIFTHFSTADESNKEYTYYQLKKF 185

Query: 183 RTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQT 234
                  K    ++     A+S+ I+      F+  RPGI LYG   +++++KS   ++ 
Sbjct: 186 NEFYDELKKENINIQTRHIANSAAIMELSETQFEGVRPGIILYGYYPSNQVDKSKLKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  +  I+ I+K  +G+ +SYG + K  R+S+IA   +GYADGY   L           
Sbjct: 246 VMELKTNIVHIKKISSGKYISYGRKFKTERESIIATLPVGYADGYTRLL----------- 294

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD----IKLDDVALA 349
           F   K  I G   PI+G+I MD  M DITD    I++GD + + G +    I  DD+A  
Sbjct: 295 FNKAKVIINGQFAPIIGRICMDQCMVDITDIKGDIKIGDEVILMGQENGIKIDADDIASM 354

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  I  R  + Y
Sbjct: 355 LGTINYEVVCMISKRVPRVY 374


>gi|238760291|ref|ZP_04621434.1| Alanine racemase 1 [Yersinia aldovae ATCC 35236]
 gi|238701493|gb|EEP94067.1| Alanine racemase 1 [Yersinia aldovae ATCC 35236]
          Length = 343

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 168/338 (49%), Gaps = 20/338 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +  ++  +R  AVVK NAYG G  +IA  L +A    + V  + E + 
Sbjct: 8   IDRRALRHNLQQIRHIAPQSRLIAVVKANAYGHGLLEIAHTLQDADC--YGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G    ++  I   N I   + S+ QL     +      + + +++D
Sbjct: 66  LRSGGIVKPILLLEGFFAAEDLPILVANRIETAVHSIEQLEALENVQLPAPINVW-MKLD 124

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++A  F    S    + Q   I+SH + AD+P       QL  F    + 
Sbjct: 125 TGMHRLGVRPEQAEAFYQRLSACDNVIQPVNIMSHFSRADEPQVETTRQQLSCFDAFTAG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEARIILI 245
             G++ S+A+S GILL P  H    RPGI LYG +  D  + SH  +   +  ++ +I +
Sbjct: 185 KPGMK-SIAASGGILLWPEAHRDWVRPGIILYGVSPLDSPHASHYNLLPAMALKSSLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AGE V YGG     RD+ + V AIGY DGYP +        +PS   G    I G 
Sbjct: 244 REHKAGEPVGYGGTWVSDRDTRLGVVAIGYGDGYPRS--------APS---GTPVRINGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
            V ++G+++MDM   D+    S +VGD + ++G D +L
Sbjct: 293 EVGLVGRVSMDMISVDLGPDASDKVGDEVLLWGSDCRL 330


>gi|161521048|ref|YP_001584475.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|189352774|ref|YP_001948401.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|160345098|gb|ABX18183.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|189336796|dbj|BAG45865.1| alanine racemase [Burkholderia multivorans ATCC 17616]
          Length = 373

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 178/360 (49%), Gaps = 33/360 (9%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R  AVVK NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L GI  P   +++    L   +    QL     L++     P  +Q  +++G
Sbjct: 71  GWDKPVLLLEGIFEPADVELVERHQLTVAVHCDEQLDL---LIAAKPQQPIDIQLKMNSG 127

Query: 132 FNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
            NRLG    + + A +   ++    +G+++L++ H A AD+    ++  QL +F    + 
Sbjct: 128 MNRLGYRPDAFRAAWERAASA--PSIGRITLMM-HFANADE--GEIDW-QLAQFDAATAG 181

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIIL 244
             G E +L++S+ +L  P  H    RPG  LYG +      H    P+   +T  ++II 
Sbjct: 182 IPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLTSKIIG 240

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++   AGE V YG +    R   I V A GYADGYP         H+P+   G    + G
Sbjct: 241 VQTLAAGETVGYGRRFTAERPMRIGVVACGYADGYP--------RHAPT---GTPIAVDG 289

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 290 VLTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDRVKVDDVAEASGTIGYELMCALARR 349


>gi|330000338|ref|ZP_08303687.1| alanine racemase [Klebsiella sp. MS 92-3]
 gi|328538021|gb|EGF64193.1| alanine racemase [Klebsiella sp. MS 92-3]
          Length = 333

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 168/350 (48%), Gaps = 42/350 (12%)

Query: 30  ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89
           +R  AVVK NAYG G  ++  AL  A    F + ++EE + LR    +  I +L G    
Sbjct: 5   SRLWAVVKANAYGHGVARVWSALSAA--DGFALLNLEEAILLREQGWKGPILLLEGFFHA 62

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQVDTGFNRLGLSLQEALDFTH 147
            E  + D   +   +SV        L    +  P    L+V++G NRLG   +      H
Sbjct: 63  DELAVLDQYRL--TTSVHSNWQIKALQQAKLRAPLDIYLKVNSGMNRLGFMPER----VH 116

Query: 148 NSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA--SLASSS 200
             + +      +G+++L+ SH A A++P   V     E  R +    +G++   SLA+S+
Sbjct: 117 TVWQQLRAISNVGEMTLM-SHFAEAENPQGIV-----EPMRRIEQAAEGLDCPRSLANSA 170

Query: 201 GILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTVVTAEARIILIRKALAGELV 254
             L  P  HF   RPGI LYG +      D  N    ++ V+T  + II ++    GE +
Sbjct: 171 ATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTG--LKPVMTLRSEIIGVQNLRPGEAI 228

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            YGG  + T++  I + A GYADGYP          +PS   G    + G     +G+++
Sbjct: 229 GYGGLYRTTQEQRIGIVACGYADGYPRV--------APS---GTPVLVDGVRTTTVGRVS 277

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y+L+  +  R
Sbjct: 278 MDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYELMCALAPR 327


>gi|50085519|ref|YP_047029.1| alanine racemase 1, biosynthetic [Acinetobacter sp. ADP1]
 gi|49531495|emb|CAG69207.1| alanine racemase 1, biosynthetic [Acinetobacter sp. ADP1]
          Length = 358

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 175/364 (48%), Gaps = 30/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ +A+  ++VK NAYG G +    AL       F V  + E ++
Sbjct: 8   IDRQALRYNLNRVKQLAPHAKIVSMVKANAYGHGIKDCLAALETT--DSFGVACLAEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           +R       I ++ G+    E  I+ + NL  V+    Q+ +  +  +  ++      ++
Sbjct: 66  IRDEGYTQSITLIEGVFSQDEMPIVIEKNLECVVHHAQQIKWLLEYKTQYITQKLKVWIK 125

Query: 128 VDTGFNRLGLSLQEALD----FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +++G NRLG    E ++      H  F+       ++  H A AD P   +N  Q+++  
Sbjct: 126 LNSGMNRLGFKPDEIIEVIQQLQHQGFH------CVLTMHFANADVPDHPMNQRQIDQLI 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-HP--MQTVVTAEA 240
           T+ +    IE S  +S+ I   P  HF   RPGI LYG +    ++ H   ++ V+   A
Sbjct: 180 TIKTACAPIEISCCNSAAIFNWPELHFDYVRPGIMLYGASPFAEQNIHQLDLKPVMRFTA 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I+ +    AGE + YG       D  +A+ +IGY DGYP      +      V LG + 
Sbjct: 240 HIMALNTIKAGEHIGYGSLYTAKTDMTVAIVSIGYGDGYPRAFIAQN-----FVALGQQL 294

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           F      PI+G+++MDM   D+TD   I +   I+++G    +D+VA A+GT  Y+LL R
Sbjct: 295 F------PIVGRVSMDMLAIDVTDR-DIAIDTEIELWGHTRLVDEVASANGTIGYELLCR 347

Query: 361 IGTR 364
           +  R
Sbjct: 348 LSNR 351


>gi|331090918|ref|ZP_08339761.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405472|gb|EGG85005.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 369

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 178/375 (47%), Gaps = 35/375 (9%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL  +K N + + N +       AV+K NAYG G   +   L   G+  F V +V+E
Sbjct: 5   LEIDLEKIKWNVNCLRNMMPSGCEMMAVIKANAYGHGAVPVGKMLNGMGIYSFAVATVDE 64

Query: 68  GVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           G++LR       I +L    +   +E + +D     +I ++    +  ++  CG S    
Sbjct: 65  GIELRENGIIGDILILGYTDLKRMEEVVRYD-----LIQTIVDERYGEEMNKCGFSIQAE 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERF 182
           L++D+G +RLG+ L E ++ T   FN +  ++  + +HL  +D            Q+E+F
Sbjct: 120 LKIDSGMHRLGV-LAENIEETEKVFNLQNLRIKGMFTHLYESDSLEKEAVEKTEKQIEKF 178

Query: 183 RTLISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQ 233
             L+ + K  GI   +  + SS G+L  P   +   R GI+L+G      DK     P+Q
Sbjct: 179 DRLVDNLKQRGIVIPKLHIQSSYGLLNYPQLQYDYVRIGIALFGVLSSKQDKTKVKLPLQ 238

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ +A +  +R+  +GE   Y G      D  IA  +IGYADG P  LSG ++     
Sbjct: 239 PALSLKALVTSVREIKSGETAGYSGAYHAEADRKIAAVSIGYADGIPRNLSGTNN----- 293

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                K  + G    I+GKI MD  + D+T    +  GD + + G     ++ + D+A  
Sbjct: 294 -----KVIVHGQKTSIIGKICMDQLLIDVTMIKDVRAGDTVTLIGREGEEEVSVLDMADK 348

Query: 350 SGTTNYDLLVRIGTR 364
           +GT   ++  R+G R
Sbjct: 349 AGTIANEIFSRLGKR 363


>gi|212704878|ref|ZP_03313006.1| hypothetical protein DESPIG_02945 [Desulfovibrio piger ATCC 29098]
 gi|212671720|gb|EEB32203.1| hypothetical protein DESPIG_02945 [Desulfovibrio piger ATCC 29098]
          Length = 352

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 163/357 (45%), Gaps = 30/357 (8%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90
           R   V+K +AYG G  ++A AL  AG + F V +V EG+ LR       I  L G    +
Sbjct: 6   RLMPVIKSDAYGHGMTEVAHALDAAGARHFAVGTVAEGICLRQDGLAQTILPLLGCQNDE 65

Query: 91  E-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS 149
           + +      L P+I+    L   + L S       A+++DTG +RLG S ++        
Sbjct: 66  DWQQANACGLTPLITGFEALEKAAALSSPADPWGVAIKLDTGMSRLGFSAEDIPALLERL 125

Query: 150 FNKKLGQLSLIISHLACADDPSSHV-NSVQLERFR----TLISHYKGIEASLASSSGILL 204
                 + SL +SH  CAD P        QLE+F     +L + Y  ++ SLA+S+G + 
Sbjct: 126 RACPGLKPSLAVSHFPCADMPEQEAFTRRQLEKFTAMTDSLRAAYPSLKRSLANSAGTMG 185

Query: 205 GPNYHFQLTRPGISLYG-----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
            P   F+L RPG SLYG     GT    +   ++ V+   A ++ +R    GE +SYG  
Sbjct: 186 WPESRFELCRPGFSLYGGNPFRGTAWEGRGAGLEPVMEVSAPLLQVRHLKPGEGISYGQT 245

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
               R+  +AV   GYA GYP   SG        + +     + G   P +G+I M M M
Sbjct: 246 FIAPREMSVAVVGAGYATGYPRGASG-------RIHV----LVNGRRAPQVGRICMGMFM 294

Query: 320 FDITDSLSIEVGDYIQIFG-------PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D+T  L    GD   + G         + +D++A A G  +Y+LL  +G    + Y
Sbjct: 295 IDVT-GLPAHAGDLAWLLGGPAAPGETPVSIDELAEACGGFSYELLCLLGQGSPRVY 350


>gi|153956178|ref|YP_001396943.1| alanine racemase [Clostridium kluyveri DSM 555]
 gi|189027531|sp|A5N376|ALR_CLOK5 RecName: Full=Alanine racemase
 gi|146349036|gb|EDK35572.1| Alr [Clostridium kluyveri DSM 555]
          Length = 391

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 183/386 (47%), Gaps = 49/386 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L  N   + +  GN     V+K +AYG G  +IA  L   GV    V  ++E +
Sbjct: 11  EINLDNLVYNIGQIKSKIGNKELIGVIKADAYGHGAVEIAKVLLENGVSRLAVAILDEAI 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +LR    +  I VL  I       I + ++ P+   VP  ++ SKL     S    ++V 
Sbjct: 71  ELRKNKIKVPIMVLGIIPHAFLDEIMNYDIEPI---VPSYSYASKLSKLAESKDKKIKVH 127

Query: 129 ---DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVNSV 177
              DTG  R+G S+        NS  +++G++S +         SH + AD+     +  
Sbjct: 128 IALDTGMGRIGFSIDP------NSV-EEIGKISKLPNIEIQSLFSHFSTADETDKAYSCE 180

Query: 178 QLERFRTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKIN 227
           Q ++++ L      K ++    ++++S+ I+  P+ +  L RPGI +YG       DK N
Sbjct: 181 QFKKYKLLYEELVKKNVKINMRTISNSAAIMELPDTYCDLVRPGIIMYGYYPSTEVDKNN 240

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            S  ++ ++T +A ++ ++   +G  + YG + K  R S+IA   +GYADGY   L G  
Sbjct: 241 LS--IKPIMTLKANVVYVKVLESGSYIGYGRKFKCNRKSVIATLPLGYADGYTRRLFG-- 296

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL---- 343
                      K  I G   P++G I MD  M D+TD   + +GD + + G    L    
Sbjct: 297 ---------KAKVIINGKFAPVVGNICMDQCMVDVTDVGEVNIGDEVVLIGEKDGLKFNA 347

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DD+A  +GT +Y++L  IG R  K Y
Sbjct: 348 DDIAEITGTISYEVLCMIGRRVPKLY 373


>gi|117923575|ref|YP_864192.1| alanine racemase [Magnetococcus sp. MC-1]
 gi|117607331|gb|ABK42786.1| alanine racemase [Magnetococcus sp. MC-1]
          Length = 396

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 167/378 (44%), Gaps = 32/378 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL++N       +G       V+K + YG+G   +A  L       F V  VEE
Sbjct: 23  LEIDLAALRHNLRQARTATGPQVAHFPVIKADGYGIGAIAVAHTLEEEA-DGFCVALVEE 81

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +LR      RI +  G++PG E+      + P +S    L    +   C       ++
Sbjct: 82  AEQLRTAGINKRIMLFSGLYPGLEERAIRARVEPFLSDEINLNALWQAAKCYGPISVHIK 141

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G  RLG   +          +    +L+ ++SH+ACADD  S + + QL     ++ 
Sbjct: 142 IDSGMARLGYHPEHVPSLLDQLAHMPELKLAGLVSHMACADDRHSPITNAQLATLSPILE 201

Query: 188 H--YKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGG------TDKINKSHPMQTVVT 237
           H   K  +A  SLA+S+ IL  PN H+Q  RPGI +YG       T+  N+   +Q VV 
Sbjct: 202 HPLVKQTQAQLSLANSATILGHPNAHYQWVRPGIMIYGASPFFPHTNAANEG--LQPVVR 259

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               I  I     G+ + YG     TR + IA   +GYADGY    S             
Sbjct: 260 WVTHIQRIHTLEKGKSLGYGHTFTATRPTRIAQLPVGYADGYNRLWSN-----------K 308

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF------GPDIKLDDVALASG 351
           G   I G   P++G + MD    DI+D L  EV  + +          +I L++ A    
Sbjct: 309 GSVLIAGQHCPVVGIVCMDQIAVDISD-LQGEVKQWDEAVLLGKQHNAEITLENWATELK 367

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L RIG R  + Y
Sbjct: 368 TIPYEILTRIGPRVPRRY 385


>gi|219856503|ref|YP_002473625.1| hypothetical protein CKR_3160 [Clostridium kluyveri NBRC 12016]
 gi|219570227|dbj|BAH08211.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 399

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 183/386 (47%), Gaps = 49/386 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L  N   + +  GN     V+K +AYG G  +IA  L   GV    V  ++E +
Sbjct: 19  EINLDNLVYNIGQIKSKIGNKELIGVIKADAYGHGAVEIAKVLLENGVSRLAVAILDEAI 78

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +LR    +  I VL  I       I + ++ P+   VP  ++ SKL     S    ++V 
Sbjct: 79  ELRKNKIKVPIMVLGIIPHAFLDEIMNYDIEPI---VPSYSYASKLSKLAESKDKKIKVH 135

Query: 129 ---DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVNSV 177
              DTG  R+G S+        NS  +++G++S +         SH + AD+     +  
Sbjct: 136 IALDTGMGRIGFSIDP------NSV-EEIGKISKLPNIEIQSLFSHFSTADETDKAYSCE 188

Query: 178 QLERFRTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKIN 227
           Q ++++ L      K ++    ++++S+ I+  P+ +  L RPGI +YG       DK N
Sbjct: 189 QFKKYKLLYEELVKKNVKINMRTISNSAAIMELPDTYCDLVRPGIIMYGYYPSTEVDKNN 248

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            S  ++ ++T +A ++ ++   +G  + YG + K  R S+IA   +GYADGY   L G  
Sbjct: 249 LS--IKPIMTLKANVVYVKVLESGSYIGYGRKFKCNRKSVIATLPLGYADGYTRRLFG-- 304

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL---- 343
                      K  I G   P++G I MD  M D+TD   + +GD + + G    L    
Sbjct: 305 ---------KAKVIINGKFAPVVGNICMDQCMVDVTDVGEVNIGDEVVLIGEKDGLKFNA 355

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DD+A  +GT +Y++L  IG R  K Y
Sbjct: 356 DDIAEITGTISYEVLCMIGRRVPKLY 381


>gi|118444310|ref|YP_877347.1| alanine racemase [Clostridium novyi NT]
 gi|166919551|sp|A0PY95|ALR_CLONN RecName: Full=Alanine racemase
 gi|118134766|gb|ABK61810.1| alanine racemase [Clostridium novyi NT]
          Length = 387

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 182/383 (47%), Gaps = 42/383 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L +N   +  LS       +VK +AYG G   I P L   G     V  V EGV
Sbjct: 11  EINLDNLASNMKHIKELSNTKEIIGIVKADAYGHGALDIVPTLIENGATALAVAVVSEGV 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--HPYA-- 125
           +LR    +  I VL    P    ++   ++   + S+     Y+K +S      H  A  
Sbjct: 71  ELRRGGIECPIMVLGFTPPSLIDMLLKHDIEQTVFSLD----YAKELSKAAEKMHKVAKI 126

Query: 126 -LQVDTGFNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + VDTG  R+G   + Q   D    S    + ++  + SH + AD+ +   ++ QL +F
Sbjct: 127 HIAVDTGMGRIGFLPNEQSIQDVKAISMLPNI-KIKGMFSHFSTADEKNKEYSAYQLNQF 185

Query: 183 RTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-P 231
                 Y+G++          +++S+ I+  P   F+  RPGI LYG   +++++K+   
Sbjct: 186 NKF---YEGLKRENVNIETRHISNSAAIMDLPETIFEGVRPGIILYGYYPSNEVDKTKLE 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  +  ++ I+K  +GE +SYG + K  R+SLIA   +GYADGY   L G      
Sbjct: 243 LKPVMQLKTNVVHIKKIPSGEYISYGRKFKTDRESLIATLPVGYADGYTRLLFG------ 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGP----DIKLDDV 346
                  K  I G + P++G+I MD  M DITD    I+VG+ + + G      I  DD+
Sbjct: 297 -----KAKVIINGQLAPVVGRICMDQCMVDITDIKGDIKVGEEVILIGEKNGVKIDADDI 351

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A   GT NY+++  I  R  + Y
Sbjct: 352 AEMLGTINYEVICMISKRVPRVY 374


>gi|262369752|ref|ZP_06063080.1| alanine racemase [Acinetobacter johnsonii SH046]
 gi|262315820|gb|EEY96859.1| alanine racemase [Acinetobacter johnsonii SH046]
          Length = 356

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 177/361 (49%), Gaps = 25/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ NA+  ++VK NAYG G +    AL  +    F V  +EE ++
Sbjct: 8   IDSQALQYNLNRVKQLAPNAKIVSMVKANAYGHGVKDCLAAL--SETDAFGVACLEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    +  I ++ G+    E   + +  L  VI    Q+ +     +  ++    L V 
Sbjct: 66  IRALGFEQPITLIEGVFSADEMSSVIEQKLECVIHHPQQVDWLLAHKTAYIAQKLKLWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTLI 186
            ++G NRLG  + E ++  +    K  G   ++  H A AD  + H +N  Q  +F  + 
Sbjct: 126 LNSGMNRLGFKVAEIINVINTL--KAEGFTCVLAMHFANAD--ADHPLNEQQRAQFLHIK 181

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARII 243
                I AS  +S+ I   P  +F   RPGI LYG +   NK+     ++ V+T  A II
Sbjct: 182 EACSPILASCCNSAAIFKWPELNFDFVRPGIMLYGASPFANKNAHDLDLKPVMTFTAEII 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +    AGE V YG      +++ +A+ +IGY DGYP      +       ++     I 
Sbjct: 242 ALNTIQAGEGVGYGSHFVANQETELAIVSIGYGDGYPRAFPKQN-------YVA----IN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V ++G++ MDM   D+T  L+ ++G  ++++G +  +DDVA A+GT  Y+LL R+  
Sbjct: 291 GQAVAVVGRVAMDMIAIDVT-GLNAKLGTKVELWGENRLVDDVAEANGTIGYELLCRLSN 349

Query: 364 R 364
           R
Sbjct: 350 R 350


>gi|325981463|ref|YP_004293865.1| alanine racemase [Nitrosomonas sp. AL212]
 gi|325530982|gb|ADZ25703.1| alanine racemase [Nitrosomonas sp. AL212]
          Length = 360

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 175/359 (48%), Gaps = 21/359 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID +AL +N   +   + +AR  AV+K NAYG G    A AL N  V  F +  ++  + 
Sbjct: 9   IDHSALTHNLTIVRQYAPSARILAVLKANAYGHGLLHTANALKN--VDGFALLELDAAIT 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L G    +E  +I    L  VI    Q++  S   +  +     ++V+
Sbjct: 67  LRTAGYKQPILLLEGFFSTKEIALIEQYQLSAVIHHTEQVSMLSDFKNHKMD--IFIKVN 124

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFRTLISH 188
           TG NRLGLS ++         N +  +   +++H A ADDPS   + + QL+ F T+   
Sbjct: 125 TGMNRLGLSPKQLPQVIKELTNDQHVKNITLMTHFASADDPSEKASVLRQLQCFETITET 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILI 245
           Y     SLA+S+ I+  P  H    RPGI LYG +   DK      +  V+T  ++II +
Sbjct: 185 Y-NYPCSLANSAAIVNYPETHSDWVRPGIMLYGASPFPDKTAADLNLLPVMTLSSKIIAM 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
                G+ V Y G         I + A GYADGYP         H+P+   G    I   
Sbjct: 244 HDLEPGDKVGYHGLFTADDRIRIGIVACGYADGYP--------RHAPT---GTPILINNQ 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              +LG+I+MDM   D+T+  + ++GD + ++G  + ++++A  +GT++Y LL  +  R
Sbjct: 293 RSRLLGRISMDMLAIDLTEVENTKLGDPVVLWGKGMPVEEIAGYAGTSSYQLLCGLSAR 351


>gi|123442531|ref|YP_001006508.1| alanine racemase, catabolic [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089492|emb|CAL12340.1| alanine racemase, catabolic [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 355

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 179/361 (49%), Gaps = 26/361 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++L+AL +N + + +  G A+  +VVK NAYG G  ++   L  A    F +  + E + 
Sbjct: 9   LNLSALHHNLNVVRSHVGTAKIWSVVKANAYGHGLARVWQGL--AATDGFALLDLNEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    Q  I +L G+   Q+ ++ D   L   + S  QL            + Y L+ +
Sbjct: 67  LREQGWQGPILLLEGVFQAQDLVLLDHYRLTTAVHSDWQLEVIKTARLTAPLNIY-LKFN 125

Query: 130 TGFNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +G NRLG  +   EA+    NS +  +G+++L+ SH A AD+P   V+  Q  + +    
Sbjct: 126 SGMNRLGFPIGQAEAVWQWANSLSN-VGEITLM-SHFANADNPIG-VDE-QFAQIQQASG 181

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARII 243
           H        A+S+ IL  PN H+   RPGI LYG +   + +      ++ V+   + II
Sbjct: 182 HIPAARC-FANSAAILRNPNTHYDWVRPGIILYGASPSGDIADIAGLGLRPVMGLRSEII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            ++   AG+ V YG + + T    I V A GYADGYP          +P+   G    + 
Sbjct: 241 ALQSLSAGQSVGYGSRYRATGVQRIGVVACGYADGYPRV--------APT---GTPIMVD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G +   +G I+MDM   D+T     ++G  ++I+G ++ +D+VA A+GT  Y+L+  + +
Sbjct: 290 GILTHTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVPIDNVAQAAGTVGYELMCALAS 349

Query: 364 R 364
           R
Sbjct: 350 R 350


>gi|160947411|ref|ZP_02094578.1| hypothetical protein PEPMIC_01345 [Parvimonas micra ATCC 33270]
 gi|158446545|gb|EDP23540.1| hypothetical protein PEPMIC_01345 [Parvimonas micra ATCC 33270]
          Length = 393

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 180/388 (46%), Gaps = 36/388 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+ N+ L + ++L  LKNN+  +      A+   V+K NAYGLG   +A  L   G   F
Sbjct: 1   MYENQSL-IFVNLDKLKNNFLKIKEKCNGAKVGIVLKANAYGLGACTVAEFLQKQGADYF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPV--ISSVPQLTFYSKLM 116
            V +  E ++LR    +  I +L G  P    EK+I +   + V  I  + +L   S   
Sbjct: 60  CVANFSEAMELRKKKIKLPILIL-GYVPNALFEKLIKNNVDLTVYNIEMIRELNEIS--A 116

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            C       +++DTG NRLG  + + L D+    ++ K   +  + SHL  +D       
Sbjct: 117 KCRKKCKIHIKIDTGMNRLGFLIDDKLKDYLKEIYSMKHIIVKGMFSHLCVSDIDDFSFT 176

Query: 176 SVQLERFRTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTD----K 225
            +Q+ERF   + H    E        +A+  G LL  +Y++ + R GI +YG       K
Sbjct: 177 KLQVERFEK-VKHILEEENLKIPMLHIANDGGALL-HDYYYDMVRVGIGIYGHYPSEYVK 234

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            N    M TVV+  + +  I+    G+ V YG      R   +A  +IGYADGYP  LS 
Sbjct: 235 DNSKMKMDTVVSFVSTVSNIKYIHKGDTVGYGRTFCADRTIKVATISIGYADGYPYELSN 294

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DIKL 343
                       G   I      ILGK+ MD TM DI+D   +++GD   ++G   D+KL
Sbjct: 295 -----------KGYVMINNKKAKILGKVCMDQTMIDISDIDDVKIGDTALLYGEYKDMKL 343

Query: 344 D--DVALASGTTNYDLLVRIGTRYAKFY 369
           D  ++A  + T  YDL+ RI  R  + Y
Sbjct: 344 DIFEIAKIANTNVYDLICRINMRIPRVY 371


>gi|254525606|ref|ZP_05137658.1| alanine racemase [Prochlorococcus marinus str. MIT 9202]
 gi|221537030|gb|EEE39483.1| alanine racemase [Prochlorococcus marinus str. MIT 9202]
          Length = 399

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 182/371 (49%), Gaps = 52/371 (14%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           LS N +  AVVK + YG   + ++      G     V +++EG+KLR +  +  I +L  
Sbjct: 48  LSKNCQFMAVVKADGYGHDAKVVSDYAIKGGASQLGVATLKEGIKLRSFGVKKPILILGN 107

Query: 86  IHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEAL 143
           ++  ++ II F  +L+P ISS+ +    + +    G+     L+VDTG +RLG       
Sbjct: 108 LYTKKDLIISFKNDLMPTISSIRECLICNNIGKHFGLKFSLHLKVDTGMSRLG------- 160

Query: 144 DFTHNSFNKKLGQLSL--------IISHLACAD-----DPSSHVNSVQLER--FRTLIS- 187
            F  N F ++  ++          I SHL+ AD     DP S   + QL+R  F  L+  
Sbjct: 161 -FESNKFVQQFEKIKSFENISIDGIYSHLSSADEDNALDPKS---TTQLQRLKFNQLLKK 216

Query: 188 ----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEAR 241
                   I+  LA+S+G+LL  ++HF + R G+S+YG +   KI+K+  ++  +  + +
Sbjct: 217 INLDRNNEIKIHLANSAGMLLNKDFHFNMVRVGLSMYGYSPLAKIDKNLLLKPALFLKVK 276

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVFLGGKG 300
           +  IR    G  VSYGG+   +R + +AV +IGYADG P  LSG ++  H+  ++     
Sbjct: 277 VAFIRIIEPGVSVSYGGKFVSSRKTKLAVLSIGYADGVPRNLSGKINVIHNNKLY----- 331

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
                  P +G ITMD  M DIT S  I +G  + + G D    I   + A  S T  ++
Sbjct: 332 -------PQVGSITMDQMMVDITGSNEIRIGSTMVLLGSDGDKTISPLEWATKSNTIPWE 384

Query: 357 LLVRIGTRYAK 367
           +L     R  +
Sbjct: 385 ILCSFKNRLPR 395


>gi|213585856|ref|ZP_03367682.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 316

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 154/323 (47%), Gaps = 33/323 (10%)

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYS 113
           F V  +EE ++LR       I +L G         FD   +P IS+      V      +
Sbjct: 12  FGVARLEEALRLRAGGITQPILLLEGF--------FDAADLPTISAQCLHTAVHNQEQLA 63

Query: 114 KLMSCGVSHPYA--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDP 170
            L +  ++ P    +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P
Sbjct: 64  ALEAVELAEPVTVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEP 123

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
                  QL+ F        G + S+A+S GILL P  HF   RPGI LYG +   +K  
Sbjct: 124 ECGATEHQLDIFNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPW 182

Query: 231 P----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                 Q V++  + +I +R   AGE V YGG     RD+ + V A+GY DGYP      
Sbjct: 183 GPDFGFQPVMSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA---- 238

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
               +PS   G    + G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +
Sbjct: 239 ----APS---GTPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERI 291

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +  + Y+L+ R+ +R A  Y
Sbjct: 292 AEMTKVSAYELITRLTSRVAMKY 314


>gi|139439475|ref|ZP_01772907.1| Hypothetical protein COLAER_01932 [Collinsella aerofaciens ATCC
           25986]
 gi|133775028|gb|EBA38848.1| Hypothetical protein COLAER_01932 [Collinsella aerofaciens ATCC
           25986]
          Length = 381

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 180/384 (46%), Gaps = 38/384 (9%)

Query: 9   LKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  AL+ N  +  N L+   R   VVK +AYG G  + A  +Y+AG   F V +V E
Sbjct: 12  VEIDRGALRRNTRAYKNLLNPRQRLCCVVKADAYGHGAVECAKIMYSAGADMFAVATVNE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIP-VISSVPQLTFYSKLMSCGVSHPY 124
           GV+LR       I +L    P  E I  + + +++P V +S   L +    ++ G    Y
Sbjct: 72  GVELRQGGITKPILILS--EPPIEAIPTLLEFDIMPSVYTSDFALAYGECAVAAGKVGKY 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L ++TG NR+G+   + LDF    +F++ + Q   + +H A AD+PS     +Q +RF 
Sbjct: 130 HLAIETGMNRIGVHYTQVLDFVRGINFHRGI-QCDGVFTHFATADEPSGWDYKLQCQRFT 188

Query: 184 TLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVV 236
             +   K  G E  +   A++   +L P+ HF + R G+ LYG          MQ   V+
Sbjct: 189 EAVQAIKDAGFECGIVHCANTPSSMLDPSMHFDMIRAGVGLYGMQPCELSGRVMQLDPVM 248

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSG-LDSEHSPSV 294
           +  AR+  +     GE V YG   ++ R  + I    IGYADG   TLS  +D       
Sbjct: 249 SVHARVTRVAHPAMGEGVGYGFTYRVPRTRVQICTLPIGYADGLSRTLSNRMDV------ 302

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV-----GDYIQIFGPD----IKLDD 345
                   +G  V  +G I MD  M  I  + + E+     GD I I G D    I +D+
Sbjct: 303 ------LYRGERVHQVGNICMDQFMVAIQSNPAHEIPEAEYGDEIIIVGRDGDAEITMDE 356

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY++    G R  K Y
Sbjct: 357 MARLRGTINYEVACGFGMRLDKVY 380


>gi|313201238|ref|YP_004039896.1| alanine racemase [Methylovorus sp. MP688]
 gi|312440554|gb|ADQ84660.1| alanine racemase [Methylovorus sp. MP688]
          Length = 356

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 174/366 (47%), Gaps = 37/366 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L AL++N   +   + +ART AVVK N YG G   +A  L  A    F V  ++E ++
Sbjct: 8   IHLAALQHNLRRVRDYAPHARTMAVVKANGYGHGLLNVARGLAEA--DGFAVLRLQEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  + +L G+    E     D  +  V+ +  Q+    +  S  V     ++++
Sbjct: 66  LRAAGYRQTLLLLEGVFESAELNAAADAGVSIVVHAEHQIAMLEQ-ASLPVPIAVFVKMN 124

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSHVNSVQLER 181
           TG NRLG        F   +F   + +L+         +++H A AD+      ++Q  R
Sbjct: 125 TGMNRLG--------FVPQAFASAVARLAACPQVSSITLMTHFATADEAPGIATALQ--R 174

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTA 238
           F    +  +    SLA+S+ IL  P  H    RPGI LYG T    +  +H  +Q V+  
Sbjct: 175 FEAGAAGMQ-YPKSLANSAAILRHPESHADWVRPGIMLYGATPVQSVTAAHFGLQAVMHL 233

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I ++    GE + YG      R++ + + A GYADGYP         H+P    G 
Sbjct: 234 QSELIALQTLPPGESLGYGATFVAERETRVGIVACGYADGYP--------RHAPG---GT 282

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +   LG+++MDM   DITD    ++G  ++++G  I +D VA A GT  Y+LL
Sbjct: 283 PIAVAGQVSKTLGRVSMDMLFVDITDIPGADIGSPVELWGATIPVDAVAEACGTVGYELL 342

Query: 359 VRIGTR 364
             + +R
Sbjct: 343 CAVTSR 348


>gi|269121335|ref|YP_003309512.1| alanine racemase [Sebaldella termitidis ATCC 33386]
 gi|268615213|gb|ACZ09581.1| alanine racemase [Sebaldella termitidis ATCC 33386]
          Length = 356

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 167/362 (46%), Gaps = 17/362 (4%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L++N + +  ++G++     +K +AYG G  ++   L + G++   V +  E  
Sbjct: 6   EINLDNLRHNINILKTIAGDSMLLPAIKADAYGHGIAEVFNVLISEGIKWVGVATFNEAE 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           KLR       I V   +     +   D N+   ++S+ ++ F   L    ++    L VD
Sbjct: 66  KLRKLDKATNILVFGPVETEDMRKAIDMNIAFPLTSMDEIDF---LNENNLAPRVHLAVD 122

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           TG  R+G S     +    +       +  I SHL+ AD  S      QLE F+ ++  +
Sbjct: 123 TGMGRIGFSRNSLDEVKRKTEENSKINVEGIFSHLSSAD-TSPEYTKRQLEDFKKIVEKF 181

Query: 190 KGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEARIILIRK 247
             I+   + +S G +      + + RPGI LYGG  K N  S+  + V+  ++R+  I+K
Sbjct: 182 PKIKYRHILNSFGSMQFSESKYDIIRPGIILYGGIKKENAFSYDFKPVMALKSRVSFIKK 241

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
                 +SY  + +      IA  +IGYADG    L+G            G+  I     
Sbjct: 242 LENNSFISYNRKYEGRAGEKIATVSIGYADGIRRDLTG-----------KGEVVINNRRC 290

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
            I G I MD  M  I + L + VGD ++ FG +I +++VA   GT +Y++L  IG R  +
Sbjct: 291 RIAGTICMDQLMVSIPEDLEVNVGDTVEFFGENIHIEEVAEKCGTISYEILCGIGQRVTR 350

Query: 368 FY 369
            Y
Sbjct: 351 IY 352


>gi|170755879|ref|YP_001783035.1| alanine racemase [Clostridium botulinum B1 str. Okra]
 gi|169121091|gb|ACA44927.1| alanine racemase [Clostridium botulinum B1 str. Okra]
          Length = 386

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 181/382 (47%), Gaps = 41/382 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV    V  + E +
Sbjct: 11  EIDLDNLQHNLRQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSRLAVAVLSEAM 70

Query: 70  KLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ- 127
           +LR+   +  I +L G  PG    ++ D ++   + S       SK+    V     L+ 
Sbjct: 71  ELRMSGVKESIMIL-GYTPGALGDMLLDNDIEQSVYSYNDALELSKI---AVLKRKILKI 126

Query: 128 ---VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
              VDTG  R+G L  +E+++  +        ++  + SH + AD+        Q+ ++ 
Sbjct: 127 HIVVDTGMGRIGFLPTKESVEDVYKISKLPNIKIEGLFSHFSSADELDKDYTLYQMNKYN 186

Query: 184 TLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGG-------TDKINKSHP 231
             I+    K I+     +A+S+ I+   N H    R GI +YG         D IN    
Sbjct: 187 EFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRDNIN---- 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS       
Sbjct: 243 LKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN------ 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +++A
Sbjct: 297 -----KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAENIA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT +Y+++  +  R  + Y
Sbjct: 352 SQIGTISYEVICNVNKRVPRVY 373


>gi|300856377|ref|YP_003781361.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
 gi|300436492|gb|ADK16259.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
          Length = 388

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 185/379 (48%), Gaps = 34/379 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  L  N   +    GN +    VVK NAYG G  +++  L   GV    V+ ++E 
Sbjct: 11  EINLDNLVYNIRQIKLKVGNNKGLIGVVKANAYGHGALEVSQVLLENGVNRLAVSELDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH----P 123
           ++LR    +A I +L GI P      I D N+ PV   VP   + SKL     +      
Sbjct: 71  IELRENGIKAPIMIL-GIVPDTFLNDIIDYNVEPV---VPSYEYASKLSKVAKNKWKTAK 126

Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG  R+G    E +++  +N       ++  + SH + +D+     +  Q E++
Sbjct: 127 IHVAVDTGMGRIGFQPNENSIEEIYNISKLPNIEIQSLFSHFSTSDEKDKTYSQEQFEKY 186

Query: 183 RTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQT 234
           +T  +    + I+ S+   A+S+ I+   + +    RPGI +YG   +D ++++   ++ 
Sbjct: 187 KTFYNELINRKIKISMRDIANSAAIMELQDTYCDAVRPGIIIYGYYPSDDVDRNDLSIKP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +A++  ++   AG+ V YG + K  R S+IA   IGYADGY   LSG         
Sbjct: 247 VMSLKAKVAYVKTLEAGKYVGYGRKFKSERKSVIATLPIGYADGYTRMLSG--------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLD--DVALAS 350
               K  + G   P++G I MD  M D+TD+  + VGD + + G    +K D  D+A   
Sbjct: 298 --KAKVIVNGKFAPVVGNICMDQCMIDVTDAGEVNVGDEVILMGEKNGLKFDAEDIAKTI 355

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y++L  I  R  + Y
Sbjct: 356 GTISYEILCSISRRVPRVY 374


>gi|319937488|ref|ZP_08011893.1| alanine racemase [Coprobacillus sp. 29_1]
 gi|319807328|gb|EFW03937.1| alanine racemase [Coprobacillus sp. 29_1]
          Length = 391

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 178/380 (46%), Gaps = 36/380 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+L AL+NN   ++ L     +  AVVK +AYG G  KI+  L   G+  F V +++E
Sbjct: 13  VEINLDALENNVQEISKLLRSRKQIMAVVKADAYGHGAIKISQELEKLGIDCFAVATIDE 72

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR       I +L    P    ++   +LI    +V    +  +L +  +     ++
Sbjct: 73  AMILRQNHIHGDILILGFTAPHLAPLLLKYHLI---QTVIDYDYGQQLNAMQLPLQIHIK 129

Query: 128 VDTGFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISHLACADDPSS---HVNSVQLERF 182
           +D+G +RLG       D TH    F      +  + SHL  AD       H    Q   F
Sbjct: 130 IDSGMHRLGADYH---DLTHIRRLFELPYLHVEGVFSHLCVADSSKMEDIHFTKQQFLNF 186

Query: 183 RTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSH-PMQ 233
              I       Y   +  + SS G+L  P+YH+   R GI+LYG    TD   K+H  +Q
Sbjct: 187 NQTIHQLQEFGYDVGKVHIQSSYGLLNYPDYHYDYARMGIALYGVQSSTDDYMKNHLNLQ 246

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++ ++ I  +    AG  + YG    L +DSLIAV  +GYADG P  LS      +  
Sbjct: 247 PVLSIQSHIACLHHYPAGSSLGYGRTYTLEKDSLIAVVPLGYADGLPRQLS-----QNQD 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
           V + GK       +PI+G+I MD  M D+T    +++ D +   G +    I ++++A  
Sbjct: 302 VLVRGKK------IPIVGRICMDQLMIDVTSLKDVQLNDIVTFIGHNHQQTIGIEELAKN 355

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T + ++L RIG R  K Y
Sbjct: 356 AHTISNEILSRIGQRLPKVY 375


>gi|188993228|ref|YP_001905238.1| alanine racemase [Xanthomonas campestris pv. campestris str. B100]
 gi|167734988|emb|CAP53200.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 360

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 181/367 (49%), Gaps = 26/367 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G  +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLDALRHNYRLARQLGGG-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E  +I + +L  V+++  Q+   ++  S      + L++D
Sbjct: 66  LRQAGVRAPILLLEGFFEHDELALIAEHDLWTVVATPWQVRALAEFRSPRPLRVW-LKLD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF     + + L Q+   ++++HLA AD+        Q   F    
Sbjct: 125 SGMHRLGLSPE---DFRAAWLHLRGLPQIDSLVLMTHLAQADELECSRTDEQAVAFALTC 181

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARII 243
              +  E SL +S G+L  P      +RPG+ LYG       S     ++ V+T  +RII
Sbjct: 182 GGMRA-ETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQPSELTAQLRPVMTVRSRII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YG +    R + + V A+GYADGYP        + +P+   G    + 
Sbjct: 241 SVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLVD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G + P++G+++MDM   D+T+    +VG  +Q++G   ++  +A     + Y LL  +  
Sbjct: 290 GQVCPLIGRVSMDMLTVDLTEHPHADVGTPVQLWGDAPQVSTLAAQCNVSAYQLLCGL-K 348

Query: 364 RYAKFYT 370
           R  + Y+
Sbjct: 349 RVPRHYS 355


>gi|303242638|ref|ZP_07329113.1| alanine racemase [Acetivibrio cellulolyticus CD2]
 gi|302589846|gb|EFL59619.1| alanine racemase [Acetivibrio cellulolyticus CD2]
          Length = 389

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 176/384 (45%), Gaps = 43/384 (11%)

Query: 10  KIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L  + +N   +  ++   A    VVK +AYG G  ++A  L   GV    V+ ++E 
Sbjct: 11  EVNLDNIAHNVKEIRRITDKKAEIMGVVKADAYGHGVMEVAKTLLENGVTRLAVSMLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L    P + E+II +     V S           +    +    ++
Sbjct: 71  IQLRKNGIDVPILILSYTDPRRAEEIILNDVTQTVFSHDLAEALSEAAVRLDKNIKIHIK 130

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSSHVNSVQLERF 182
           +D+G  R+G           N    K+ +L  II     +H A +D+       +Q ERF
Sbjct: 131 IDSGMTRVGF--MPGYSAVKNVV--KISKLPKIIIEGLFTHFASSDEIDRSYTYMQFERF 186

Query: 183 RTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSH 230
            +++S    I        + +S+G++  P  H  + RPGI+LYG         D+IN   
Sbjct: 187 MSIVSELNRIGIYIPVKHVCNSAGVIEFPEMHLNMVRPGIALYGMYPSEEVQKDRIN--- 243

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +T +A IIL++       +SYG   K  R+S IA   IGYADGY   L+      
Sbjct: 244 -LKPAMTLKANIILVKDVETDTCISYGRIFKTQRESRIATLPIGYADGYTRLLTN----- 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIF----GPDIKLDD 345
                  G+  + G  VPI+GKI MD  M D+TD    + VGD + +F    G +I ++D
Sbjct: 298 ------KGRVLVNGQSVPIVGKICMDQCMIDVTDVQGEVNVGDEVVLFGSQNGSEISIED 351

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY++   IG R  + Y
Sbjct: 352 LASKIGTINYEIACIIGKRIPRVY 375


>gi|221196747|ref|ZP_03569794.1| alanine racemase [Burkholderia multivorans CGD2M]
 gi|221203416|ref|ZP_03576435.1| alanine racemase [Burkholderia multivorans CGD2]
 gi|221177350|gb|EEE09778.1| alanine racemase [Burkholderia multivorans CGD2]
 gi|221183301|gb|EEE15701.1| alanine racemase [Burkholderia multivorans CGD2M]
          Length = 373

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 177/360 (49%), Gaps = 33/360 (9%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R  AVVK NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L GI  P   +++    L   +    QL     L++     P  +Q  +++G
Sbjct: 71  GWDKPVLLLEGIFEPADVELVERHRLTVAVHCDEQLDL---LIAARPQQPIDIQLKMNSG 127

Query: 132 FNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
            NRLG    + + A +   ++    +G+++L++ H A AD+    ++  QL +F    + 
Sbjct: 128 MNRLGYRPDAFRAAWERAASA--PSIGRITLMM-HFANADE--GEIDW-QLAQFDAATAG 181

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIIL 244
             G E +L++S+  L  P  H    RPG  LYG +      H    P+   +T  ++II 
Sbjct: 182 IPG-ERTLSNSAAALWHPRAHRDWVRPGTILYGASPTGASRHIADTPLMAAMTLTSKIIG 240

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++   AGE V YG +    R   I V A GYADGYP         H+P+   G    + G
Sbjct: 241 VQSLAAGETVGYGRRFTAERPMRIGVVACGYADGYP--------RHAPT---GTPIAVDG 289

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 290 VLTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCALARR 349


>gi|40063239|gb|AAR38066.1| alanine racemase [uncultured marine bacterium 577]
          Length = 357

 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 182/366 (49%), Gaps = 34/366 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   +   S  +R  AV+K +AYG G  + A A  +A    F +  +E  ++
Sbjct: 9   IDLSALEHNLSVVRRHSSRSRVMAVIKADAYGHGLLRAAEAFKSA--DGFAILELEAAIR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           LR    +  I ++ G     E  +F+  +L  VI +  QL   S         P  L V 
Sbjct: 67  LREAGYEHTILLIEGFFSRSELELFERYHLSTVIHNSWQLDMLS-----AYKQPRGLDVF 121

Query: 129 ---DTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLER 181
              +TG NRLG + ++   AL+   +  N  +GQ++L+ +H ACAD        + QL+ 
Sbjct: 122 LKLNTGMNRLGFTPEQFLRALEILKS--NPVIGQITLM-THFACADAYKDRSGVIEQLKC 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTA 238
           F ++ S       SLA+S+ IL  P  H    RPGI LYG +    I+ S   ++  +T 
Sbjct: 179 FNSITSDLD-FPCSLANSAAILSYPETHADWVRPGIMLYGSSPFSDISASELDLRPAMTL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +RII ++    G+ V YG    + R   + + A GYADGYP         H+P+   G 
Sbjct: 238 TSRIIAVQDLHTGDKVGYGQTYCVKRPMRVGIVAGGYADGYP--------RHAPT---GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    I+G+++MDM   D+T+  +  VG  +  +G  + +D+VA ++GT +Y+LL
Sbjct: 287 PISVDGIRTRIIGRVSMDMLHVDLTNIENGGVGSLVIFWGKGMPVDEVAESAGTISYELL 346

Query: 359 VRIGTR 364
             +  R
Sbjct: 347 CSLAQR 352


>gi|163781726|ref|ZP_02176726.1| alanine racemase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882946|gb|EDP76450.1| alanine racemase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 348

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 184/368 (50%), Gaps = 41/368 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           L+I  +A++ N   +    G  +  AV+K +AYG+G + +AP L     V+ F V  VEE
Sbjct: 16  LRIKRSAVEENVRELFRFGGK-KLIAVIKSDAYGIGVKYVAPILRELPEVESFAVACVEE 74

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           GV LR    +  + +L GI P + + + +  L PV+S +  L              + ++
Sbjct: 75  GVLLREMGIKREVLILGGILPEELEAVKEYGLTPVVSDIEHLKIIGN-----EDIKFHVK 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  RLG  + E +D           ++  I+SHL+   D     +  Q+ERF  ++ 
Sbjct: 130 YDTGMGRLGF-VDEFVDDP---------RVVGIMSHLSTPAD--EEFSRKQIERFEAIVR 177

Query: 188 HY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVVTAEARIIL 244
            Y + I+  L SS+G++    Y   + R G+++YG  +K  K +P++    V+  AR++ 
Sbjct: 178 RYSRKIKVHLESSAGVIYRVPYTTHI-RVGLAIYG--EKPLKEYPLRLRPAVSIRARVLS 234

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI-- 302
           ++   AG  +SYG      R+  I V A GYADG   +LS              +G++  
Sbjct: 235 LKTLPAGHPISYGRTFVTEREMRIGVIAFGYADGLMKSLS-------------NRGYLLY 281

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           +G  +PI+G ITMDMT+ D+  + ++ VGD++ +   +    ++A  +GT  Y+L+  + 
Sbjct: 282 EGNKLPIVGNITMDMTIVDV-GTANVRVGDWVTVVSEERTFGELAREAGTIPYELMCNVS 340

Query: 363 TRYAKFYT 370
           +R  +  T
Sbjct: 341 SRVKREVT 348


>gi|304396143|ref|ZP_07378025.1| alanine racemase [Pantoea sp. aB]
 gi|304356512|gb|EFM20877.1| alanine racemase [Pantoea sp. aB]
          Length = 356

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 179/367 (48%), Gaps = 38/367 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL+ N   +   +  +R  +VVK NAYG G E++  AL  +    F + ++EE ++
Sbjct: 9   INQQALRQNLAVVRQAAPASRVWSVVKANAYGHGIERVREAL--SATDGFALLNMEEAIQ 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    +  I +L G   P   ++I    L   + S  Q+     L S  +S P    L+
Sbjct: 67  LREQGWKKPILLLEGFFQPEDLQLIDRYRLTTSVHSNWQI---KALASAQLSAPVDIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-----LIISHLACADDPSSHVNSVQ-LER 181
           +++G NRLG   ++      N   +KL  LS      +++H A A++    V  +Q +E+
Sbjct: 124 MNSGMNRLGFRPEQV-----NGAWQKLRALSNVGEMTLMAHFADAENSQGLVAPLQRIEQ 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
               +S  +    SL++S+  L  P  HF   RPGI LYG +   N        +Q V+T
Sbjct: 179 AAEGLSCPR----SLSNSACTLWHPEAHFDWVRPGIILYGASPSGNWQDIAGSGLQPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II +++  AG+ V YG +   +    I V A GYADGYP         H+P+   G
Sbjct: 235 LSSEIIAVQQLQAGDGVGYGYRYHASTAQRIGVVACGYADGYP--------RHAPT---G 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G M  ++G ++MDM   D+T      +G  ++++G  +K+D VA A+GT  Y+L
Sbjct: 284 TPVCVDGVMTQVVGAVSMDMITVDLTPCPQAGIGSAVELWGEQVKIDQVAKAAGTVGYEL 343

Query: 358 LVRIGTR 364
           +  +  R
Sbjct: 344 MCALAPR 350


>gi|21233076|ref|NP_638993.1| alanine racemase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770016|ref|YP_244778.1| alanine racemase [Xanthomonas campestris pv. campestris str. 8004]
 gi|23813644|sp|Q8P4R0|ALR_XANCP RecName: Full=Alanine racemase
 gi|81304032|sp|Q4UQB5|ALR_XANC8 RecName: Full=Alanine racemase
 gi|21114928|gb|AAM42917.1| alanine racemase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575348|gb|AAY50758.1| alanine racemase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 360

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 181/367 (49%), Gaps = 26/367 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G  +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLDALRHNYRLARQLGGG-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E  +I + +L  V+++  Q+   ++  S      + L++D
Sbjct: 66  LRQAGVRAPILLLEGFFEHDELALIAEHDLWTVVATPWQVRALAEFRSPRPLRVW-LKLD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF     + + L Q+   ++++HLA AD+        Q   F    
Sbjct: 125 SGMHRLGLSPE---DFRAAWLHLRGLPQIDSLVLMTHLAQADELECSRTDEQAVAFALTC 181

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARII 243
              +  E SL +S G+L  P      +RPG+ LYG       S     ++ V+T  +RII
Sbjct: 182 GGMRA-ETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQPSELTAQLRPVMTVRSRII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YG +    R + + V A+GYADGYP        + +P+   G    + 
Sbjct: 241 SVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLVD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G + P++G+++MDM   D+T+    +VG  +Q++G   ++  +A     + Y LL  +  
Sbjct: 290 GKVCPLIGRVSMDMLTVDLTEHPHADVGTPVQLWGDAPQVSTLAAQCNVSAYQLLCGL-K 348

Query: 364 RYAKFYT 370
           R  + Y+
Sbjct: 349 RVPRHYS 355


>gi|170735828|ref|YP_001777088.1| alanine racemase [Burkholderia cenocepacia MC0-3]
 gi|169818016|gb|ACA92598.1| alanine racemase [Burkholderia cenocepacia MC0-3]
          Length = 373

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 176/360 (48%), Gaps = 33/360 (9%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R  AVVK NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGL--AAADGIGLLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L G+  P   ++     L   +    QL     L++     P  +Q  +++G
Sbjct: 71  GWDKPVLLLEGVFEPADVELADRHRLTVAVHCDEQLDL---LIAAKPRQPIDIQLKMNSG 127

Query: 132 FNRLG---LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
            NRLG    + + A +   N+    +G+++L++ H A AD+    V+  QL++F    + 
Sbjct: 128 MNRLGYRPAAFRAAWERAANA--PSIGKITLMM-HFANADE--GEVDW-QLDQFDATTAG 181

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIIL 244
             G E S+++S+ +L  P  H    RPG  LYG +      H    P+   +T  ++II 
Sbjct: 182 IPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLSSKIIG 240

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++     E V YG +    R   I V A GYADGYP         H+P+   G    + G
Sbjct: 241 VQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYP--------RHAPT---GTPIAVDG 289

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 290 VMTRVVGRVSMDMLTVDLTPCPNAGIGSRVELWGDQVKVDDVAQASGTIGYELMCALARR 349


>gi|292488465|ref|YP_003531347.1| alanine racemase [Erwinia amylovora CFBP1430]
 gi|292899653|ref|YP_003539022.1| alanine racemase [Erwinia amylovora ATCC 49946]
 gi|291199501|emb|CBJ46618.1| Alanine racemase, catabolic [Erwinia amylovora ATCC 49946]
 gi|291553894|emb|CBA20939.1| Alanine racemase [Erwinia amylovora CFBP1430]
 gi|312172607|emb|CBX80863.1| Alanine racemase [Erwinia amylovora ATCC BAA-2158]
          Length = 356

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 177/368 (48%), Gaps = 40/368 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL+ N       +  AR  +VVK NAYG G E +  +L       F + ++EE + 
Sbjct: 9   INRAALRQNLAIARHSAAGARLWSVVKANAYGHGIEHVWQSLTE--TDGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    +  I +L G  HP    ++    L   + S  Q+   + L    +S P    L+
Sbjct: 67  LRECGWKKPILLLEGFFHPDDLPLLDRYRLTTSVHSNWQI---NALAQAKLSAPLDIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +++G NRLG       D  H+ + K      +G+L+L+ +H A  D  ++   +  L+R 
Sbjct: 124 MNSGMNRLGFQP----DRVHSVWQKLRALENVGELTLM-AHFA--DAETTEGVAGPLKRI 176

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVV 236
                  +G+E   SLA+S+  L  P  H+   RPGI LYG    G  +      +Q V+
Sbjct: 177 EQAA---EGLECPRSLANSAATLWHPQTHYDWVRPGIILYGASPSGQWRDIAGSGLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II +++  AG  V YGG+ +      I V A GYADGYP         H+P+   
Sbjct: 234 TLTSEIIAVQQLAAGSSVGYGGRYRANCSQRIGVVACGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G    I+G ++MDM   D+T      +G  ++++G ++K+DDVA ASGT  Y+
Sbjct: 283 GTPIRVDGEKTQIVGAVSMDMITVDLTPCPRAGIGSQVELWGDNVKIDDVAAASGTVGYE 342

Query: 357 LLVRIGTR 364
           L+  +  R
Sbjct: 343 LMCALAPR 350


>gi|260549412|ref|ZP_05823631.1| alanine racemase 1 [Acinetobacter sp. RUH2624]
 gi|260407521|gb|EEX00995.1| alanine racemase 1 [Acinetobacter sp. RUH2624]
          Length = 356

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 175/360 (48%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 8   IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAAL-NAS-DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    +  + ++ G+    E  +  +     VI    Q  +  K     ++    + V 
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG    E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKNPEVIEIIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
             + + AS  +S+ I   P  +F   RPGI LYG +   DK      ++ V+T  A +I 
Sbjct: 183 ACEPVLASCCNSAAIFKWPEMNFDYVRPGIMLYGASPFADKTVHELDLKPVMTFTAEVIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP         +    F+     I G
Sbjct: 243 LNHIQAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYP-------RAYVKQNFVA----IDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ TR
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSTR 350


>gi|33864030|ref|NP_895590.1| alanine racemase [Prochlorococcus marinus str. MIT 9313]
 gi|33635614|emb|CAE21938.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9313]
          Length = 398

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 173/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  A++ N  S+   L  +    AVVK + YG G   +A A    G +   V +++E
Sbjct: 31  VEVNPAAVEANCRSLRRHLCESCALMAVVKADGYGHGALTVARAALQGGAKSLGVATLQE 90

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR     A + VL  + H    K      L+P +SS+ +      L    G      
Sbjct: 91  GIELRQAGHNAPVLVLGNLTHSEDLKACLHWQLMPTLSSMREALLCQNLADGSGRQFRIQ 150

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD----PSSHVNSVQLER 181
           L++DTG  RLG  L+EA        +    +L  I SHLA AD      ++ V   Q + 
Sbjct: 151 LKIDTGMTRLGCELKEAPMLVEAIGHLNQLELKGIYSHLALADGDLQGKAAMVTDQQQQH 210

Query: 182 F----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235
           F    RTL   + G    LA+S+G L     H+ + R G++LYG +   ++     +Q  
Sbjct: 211 FETVLRTLPEQHNGFTRHLANSAGTLRDRGLHYDMVRVGLALYGHSPNLQLQGKVDLQPA 270

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ +AR+ LIR   AG  VSYG +    R S +AV  IGYADG   +LSG  S       
Sbjct: 271 LSVKARVTLIRDVPAGVGVSYGHRFTTRRPSRLAVVGIGYADGVSRSLSGQIS------- 323

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                   G ++P +G ITMD  + D T+   +EVG  + + G D    I     +  SG
Sbjct: 324 ----AIADGQLLPQVGAITMDQLVLDATNHPDLEVGSIVTLLGKDGDACITPQQWSDLSG 379

Query: 352 TTNYDLLVRIGTRYAKF 368
           +  +++L     R  + 
Sbjct: 380 SIPWEVLCSFKHRLPRL 396


>gi|291522358|emb|CBK80651.1| alanine racemase [Coprococcus catus GD/7]
          Length = 392

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 188/383 (49%), Gaps = 37/383 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L ALK+N   + A+ G+ +   V+K NAYG G   +A  L   G   F V +V+EG+
Sbjct: 10  EINLDALKHNIQEIQAVLGDTKLMCVIKTNAYGHGSIVLARELAAMGAYGFAVATVDEGI 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---L 126
           +LR       I VL  +   Q   +   +++P I +      +  + +    H  A   +
Sbjct: 70  ELRNNGIIQPILVLGFVAKEQYADMITHHIMPAIFTYSMAKDFDAVAN--AMHTVADVHI 127

Query: 127 QVDTGFNRLGL-SLQEALDFTH------NSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           ++DTG +R+G  S  E+++ T       NS  K + ++  I +H ACAD    H+   QL
Sbjct: 128 KLDTGMSRIGFKSDAESIEATVQGIVMINSLLKNI-RIDGIFTHFACADCEDDHMTFKQL 186

Query: 180 ERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-P 231
           +RF  +I   +  G+   +   A+S+ I+  P     + R GI +YG   +D++++    
Sbjct: 187 KRFDNVIDRLEKNGVHIPIKHCANSAAIIKYPGMRMNMARAGIIIYGLYPSDEVDREVIK 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  ++ +I ++    G  V YG      R + IA  +IGY DGYP  LS     + 
Sbjct: 247 LEPVMRLKSHVIYVKTVEPGTTVGYGATYVCQRPTKIATVSIGYGDGYPRALS-----NK 301

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD----IKLDDV 346
             V +G + +      PI+G+I MD  M D+TD+   I+ GD + + G      I +++V
Sbjct: 302 GRVLIGSQSW------PIIGRICMDQLMVDVTDADYEIKQGDEVVLVGSQGSESIPVEEV 355

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + + NY+ +  I  R  + Y
Sbjct: 356 AAINNSFNYEFVCDINRRVPRVY 378


>gi|188578747|ref|YP_001915676.1| alanine racemase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523199|gb|ACD61144.1| alanine racemase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 366

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 177/357 (49%), Gaps = 27/357 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLAKRLGGS-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V ++  Q+   +   S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQSPRPLRVW-LKMD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF         L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLCGLPQIASLVLMTHLARADELDCSRTDEQAVAF-ALS 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVTAEARI 242
           +     E SL +S G+L  P      +RPG+ LYG      D  N +  ++ V+T  +RI
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQ-LRPVMTLRSRI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           IL+R    GE V YG +    R + + V A+GYADGYP        + +P+   G    +
Sbjct: 240 ILVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            G + P++G+++MDM   D+TD     +G  +Q++G   ++  +A     + Y LL 
Sbjct: 289 DGQVCPLIGRVSMDMLTVDLTDHPQAAIGATVQLWGQAPRVGPLATQCNVSAYQLLC 345


>gi|330895721|gb|EGH28011.1| alanine racemase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 330

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 170/339 (50%), Gaps = 27/339 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-EAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A + +L G     E  +I + +L  V+ +  QL    +    G      L
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELALIVEHDLGTVVHATWQLEAIEQ-ARLGKPITVWL 121

Query: 127 QVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +R+GL   E    +       K+ ++ +++SH + AD+ +S  +  QL  F T 
Sbjct: 122 KLDTGMHRVGLHPHEYQAGYQRLLATGKVARV-VLMSHFSRADELNSGCSDEQLAVFETF 180

Query: 186 ISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAE 239
               KG+  E SL +   +L  P      +RPGI LYG T   +++HP+    Q V+T E
Sbjct: 181 ---RKGLAAETSLKNPPAVLGWPQIPSDWSRPGIMLYGAT-PFDQAHPLADRLQPVMTLE 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II +R+   GE V YG      R S I V A+GYADGYP         H+P+   G  
Sbjct: 237 SKIISVRELPVGEPVGYGATFVCDRPSRIGVVAMGYADGYP--------RHAPT---GTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
             I G    +LG+++MDM   D+TD     +G  +++ G
Sbjct: 286 VQIDGQPSRLLGRVSMDMLCVDLTDVPQAGLGSRVELVG 324


>gi|261417347|ref|YP_003251030.1| alanine racemase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373803|gb|ACX76548.1| alanine racemase [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 407

 Score =  135 bits (341), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 175/377 (46%), Gaps = 30/377 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+L AL NN   + + +  + +    VK ++YG G    + A    G     V  + E
Sbjct: 19  IEINLDALCNNIQFIRSQIPASTKILLPVKADSYGHGSLACSFAAKFGGADYLGVAHISE 78

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYAL 126
           G+ LR Y     I VL    P       +  L   I+ +   + F   L   G      L
Sbjct: 79  GMLLRQYGMDLPILVLGPCTPSDFAYFVEYQLTAAITDIRTAMAFDQFLGETGTECKAHL 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRT 184
            +DTG NR G    +A DF +      L  L    + +HLA AD P +    +Q++RF  
Sbjct: 139 AIDTGMNRYGF---DAEDFNNIRAALSLKHLKFEGMFTHLATADMPGNPKTEIQIQRFTR 195

Query: 185 LIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237
           L+     +G+   +   +SS+G L  P  HF + RPG++LYG      I  + P++ V+ 
Sbjct: 196 LVDVLEAEGLRPEICHCSSSAGTLTHPESHFDMVRPGLTLYGYNCMGAIPTTLPIKPVMK 255

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++ I  +     GE VSYGG     + + IA  AIGY DGY      L  E++      
Sbjct: 256 IKSTIRHVHDVKPGETVSYGGYWAAQQLTRIATIAIGYGDGY------LRGEYN-----K 304

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G  FI+G + PILG++ MD TM D++    ++VG+ + +   +    I ++ VA    T 
Sbjct: 305 GFVFIRGQLCPILGRVCMDATMVDVSHIPDVQVGETVDVVNGELDFRISMESVAEEHHTI 364

Query: 354 NYDLLVRIGTR-YAKFY 369
            Y++  R+  R Y K+Y
Sbjct: 365 PYEITSRVARRLYRKYY 381


>gi|225010284|ref|ZP_03700756.1| alanine racemase [Flavobacteria bacterium MS024-3C]
 gi|225005763|gb|EEG43713.1| alanine racemase [Flavobacteria bacterium MS024-3C]
          Length = 363

 Score =  135 bits (341), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 170/368 (46%), Gaps = 23/368 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL +N+  M + +S       VVK N YG     IA  L + GV    V    E
Sbjct: 6   LEIDLAALAHNYRYMRSKISAETMLLGVVKANGYGSESIAIAQKLTDLGVNYLGVAYTHE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           GV LRL   +  I VL   HP  E+   I +  L P I S+  L  + ++      +P  
Sbjct: 66  GVALRLAGIKTPILVL---HPQPEEFHDIVNHCLEPSIYSIRTLEAFIQVAPLNSHYPIH 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERFR- 183
           L+++TG NRLGLS             +   ++  ++SHLA  DD        +Q++RF+ 
Sbjct: 123 LKLNTGLNRLGLSTGTLERVCKTLLCQSNVKVKAVLSHLAATDDLKERAFTELQIQRFKD 182

Query: 184 --TLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
               I  + G  A   L +SSGI+  P   F + R GI+LYG  +       ++ V T  
Sbjct: 183 GVAFIEKHIGPVAIKHLINSSGIINFPEAAFNMVRSGIALYGYGNNPKIDALLKPVATLT 242

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            +I  I     G+ V Y       +   +A   IG+ADG    +S +  +    VF+GGK
Sbjct: 243 TKISQIHSIEKGDWVGYNKGFVANKKMRVATLTIGHADG----ISRVYGQGKGVVFVGGK 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
                   PI+G + MDM M D+ + ++ E GD + IFG     +  A  + T +Y+LL 
Sbjct: 299 ------PCPIIGNVCMDMLMIDLENQIANE-GDSVVIFGKGASAETFAGGAKTISYELLT 351

Query: 360 RIGTRYAK 367
            IG R  +
Sbjct: 352 GIGARVKR 359


>gi|242238192|ref|YP_002986373.1| alanine racemase [Dickeya dadantii Ech703]
 gi|242130249|gb|ACS84551.1| alanine racemase [Dickeya dadantii Ech703]
          Length = 358

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 174/362 (48%), Gaps = 26/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D +AL++N   +  ++  +R  A+VK NAYG G  + A    +A    + V+ + E + 
Sbjct: 8   VDRSALRHNLQLIRQMAPQSRLIAIVKANAYGHGALEAARVFSDA--DGYGVSRLSEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     E  ++ +  L   +  V QL   + L    + HP    ++
Sbjct: 66  LRAGGITKPILLLEGFFCADELPLLAEHQLETAVHCVEQL---AALEQATLPHPLKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+    A  F    S    + Q   ++SH   AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVLPAHAEAFYARLSSCANVVQPVNVMSHFCRADEPEFDTTRRQLDCFDAFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  H    RPGI LYG    G     +   ++  +T  + +
Sbjct: 183 RGKPGAQ-SIAASGGILLWPEAHRDQIRPGIILYGVSPLGHGDAGQWQ-LKPAMTLTSHL 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YG     TRD+ + V A+GY DGYP    G  S        G   +I
Sbjct: 241 IAVREHHAGEPVGYGSTWSSTRDTRLGVVAMGYGDGYP---RGARS--------GTPVWI 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VP++G+++MDM   D+      +VG+ + ++G  + +++VA  +  + Y+L+ R+ 
Sbjct: 290 NGREVPLVGRVSMDMLTVDLGPDADDQVGNEVILWGGPLPVENVAAHNDISAYELITRLT 349

Query: 363 TR 364
            R
Sbjct: 350 AR 351


>gi|148381338|ref|YP_001255879.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|153933765|ref|YP_001385715.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|153935067|ref|YP_001389121.1| alanine racemase [Clostridium botulinum A str. Hall]
 gi|148290822|emb|CAL84957.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|152929809|gb|ABS35309.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|152930981|gb|ABS36480.1| alanine racemase [Clostridium botulinum A str. Hall]
          Length = 386

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 177/377 (46%), Gaps = 31/377 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV    V  + E +
Sbjct: 11  EIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSRLAVAVLSEAM 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           +LR+   +  I +L         ++ D ++   + S       SK+    V     L+  
Sbjct: 71  ELRMSGVKEPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKI---AVLKRKILKIH 127

Query: 128 --VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
             VDTG  R+G L  +E+++  +        ++  I SH + AD+        Q+ ++  
Sbjct: 128 IVVDTGMGRIGFLPTKESVEDVYKISKLPNIEIEGIFSHFSSADESDKDYTLYQMNKYNA 187

Query: 185 LIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
            I+    K I+     +A+S+ I+   N H    R GI +YG       +  +  ++ V+
Sbjct: 188 FINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRNNINLKPVM 247

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS            
Sbjct: 248 SLKTSIVHIKKVSSGEYISYGRTFKTKRESIIATLPIGYADGYNRLLSN----------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
            GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D+A   GT
Sbjct: 297 KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAEDIASQIGT 356

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y+++  +  R  + Y
Sbjct: 357 ISYEVICNVNKRVPRVY 373


>gi|302326590|gb|ADL25791.1| alanine racemase [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 434

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 175/377 (46%), Gaps = 30/377 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+L AL NN   + + +  + +    VK ++YG G    + A    G     V  + E
Sbjct: 46  IEINLDALCNNIQFIRSQIPASTKILLPVKADSYGHGSLACSFAAKFGGADYLGVAHISE 105

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYAL 126
           G+ LR Y     I VL    P       +  L   I+ +   + F   L   G      L
Sbjct: 106 GMLLRQYGMDLPILVLGPCTPSDFAYFVEYQLTAAITDIRTAMAFDQFLGETGTECKAHL 165

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRT 184
            +DTG NR G    +A DF +      L  L    + +HLA AD P +    +Q++RF  
Sbjct: 166 AIDTGMNRYGF---DAEDFNNIRAALSLKHLKFEGMFTHLATADMPGNPKTEIQIQRFTR 222

Query: 185 LIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237
           L+     +G+   +   +SS+G L  P  HF + RPG++LYG      I  + P++ V+ 
Sbjct: 223 LVDVLEAEGLRPEICHCSSSAGTLTHPESHFDMVRPGLTLYGYNCMGAIPTTLPIKPVMK 282

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++ I  +     GE VSYGG     + + IA  AIGY DGY      L  E++      
Sbjct: 283 IKSTIRHVHDVKPGETVSYGGYWAAQQLTRIATIAIGYGDGY------LRGEYN-----K 331

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G  FI+G + PILG++ MD TM D++    ++VG+ + +   +    I ++ VA    T 
Sbjct: 332 GFVFIRGQLCPILGRVCMDATMVDVSHIPDVQVGETVDVVNGELDFRISMESVAEEHHTI 391

Query: 354 NYDLLVRIGTR-YAKFY 369
            Y++  R+  R Y K+Y
Sbjct: 392 PYEITSRVARRLYRKYY 408


>gi|329296350|ref|ZP_08253686.1| alanine racemase [Plautia stali symbiont]
          Length = 356

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 176/362 (48%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +   + +AR  +VVK NAYG G  ++  +L  A    F + ++EE + 
Sbjct: 9   INQQALRHNLAIVRQAAPHARVWSVVKANAYGHGIARVWQSL--AETDGFALLNMEEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L G     +  + D   L   + S  Q+   +K         Y L+++
Sbjct: 67  LREQGWKKLILLLEGFFHADDLTLIDRYRLTTSVHSNWQIQALAKAQLSAPVDVY-LKIN 125

Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G NRLG   ++A    H       +G+++L+ +H A A++P   V  +Q      +   
Sbjct: 126 SGMNRLGFRPEQAQAAWHKLRALPSVGEMTLM-AHFADAENPQGLVEPMQ-----RVEQA 179

Query: 189 YKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARI 242
            +G+    SLA+S+  L  P  HF   RPGI LYG +   +     S  +Q V+T  + I
Sbjct: 180 AEGLNCPRSLANSATTLWHPQAHFDWVRPGIILYGASPSGDWQDIASTGLQPVMTLSSEI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +++  AGE V YG +        I + A GYADGYP         H+P+   G    +
Sbjct: 240 IGVQQLSAGEGVGYGYRYHAAALQRIGIVACGYADGYP--------RHAPT---GTPVSV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G     LG I+MDM M D+       +G  ++++G ++K+D+VA A+GT  Y+L+  + 
Sbjct: 289 DGIRTQTLGAISMDMMMIDLEPCPQAGIGSRVELWGNEVKIDEVAKAAGTVGYELMCALA 348

Query: 363 TR 364
            R
Sbjct: 349 PR 350


>gi|294624631|ref|ZP_06703303.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292601066|gb|EFF45131.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 366

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 178/356 (50%), Gaps = 25/356 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLAKRLGGS-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR     A I +L G     E ++I + +L  V ++  Q+   ++  S      + L++D
Sbjct: 66  LRQAGIGAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRVW-LKMD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQ--TVVTAEARII 243
           +     E SL +S G+L  P      +RPG+ LYG      + +H  Q   V+T  +RII
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTAHTAQLRPVMTLRSRII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YG +    R + + V A+GYADGYP        + +P+   G    + 
Sbjct: 241 SVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLVD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL 
Sbjct: 290 GQVCPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVGALAAQCNVSAYQLLC 345


>gi|319764875|ref|YP_004128812.1| alanine racemase [Alicycliphilus denitrificans BC]
 gi|330827080|ref|YP_004390383.1| alanine racemase [Alicycliphilus denitrificans K601]
 gi|317119436|gb|ADV01925.1| alanine racemase [Alicycliphilus denitrificans BC]
 gi|329312452|gb|AEB86867.1| alanine racemase [Alicycliphilus denitrificans K601]
          Length = 358

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 174/369 (47%), Gaps = 26/369 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS-VE 66
           R   DL AL+ N+    A+ G  + AA +K NAYG G  + A AL  AG  D F  +  +
Sbjct: 6   RADFDLAALRANYAHAKAVHGG-KVAATLKANAYGHGAVECARAL--AGQADAFAVAFAQ 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN--LIPVISSVPQLTFYSKLMSCGVS--- 121
           E ++LR       I VL G   G + +       L  V+    QL     L   G     
Sbjct: 63  EAMELREAGLTEPILVLEGAF-GMDDVALAQRHGLWLVVHQEEQLRMLESLQDRGGGAGV 121

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           H + L++DTG +R G++  +A       +   K+  ++L+ +HLA AD+P + +   QL 
Sbjct: 122 HAW-LKIDTGMHRAGVAPGQARALWQRLAACDKVAGITLM-THLASADEPGNPMTGRQLA 179

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
            F        G   S+A+S+G+L     H    RPGI LYG   +   S  +Q V+   +
Sbjct: 180 VFADATQGLPGPR-SIANSAGVLGWKGAHQDWARPGIMLYGADPRGMPSDVLQPVMRLAS 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            + + R    GE + YGG     R + + + A+GYADGYP  +        PS   G   
Sbjct: 239 EVFVERWLAPGEALGYGGSFVADRPTRVGLVAMGYADGYPRVV--------PS---GTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G +  I+G++ MDM   D+TD      G  ++++G  + ++ VA A+GT  Y+LL  
Sbjct: 288 AVDGRLTRIIGRVAMDMLTVDLTDLPGAGPGAQVELWGSQVSVNQVAAAAGTIAYELLCN 347

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 348 V-KRVRRVY 355


>gi|213423375|ref|ZP_03356363.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 299

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 135/277 (48%), Gaps = 3/277 (1%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V LR + +  A + +L G+ P          + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 193

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+ G  +   S P++   T    I+ ++
Sbjct: 194 KAFPTSRYSLANSCGMFLHPAWREDLCRPGVALF-GVAQPWFSTPLKPAFTLTLTILRVQ 252

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
               G  + YG     TR   IA  + GYADG P  L
Sbjct: 253 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL 289


>gi|86608143|ref|YP_476905.1| alanine racemase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556685|gb|ABD01642.1| alanine racemase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 424

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 180/374 (48%), Gaps = 27/374 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID   L+ N   +   L  N    AVVK NAYG G + +AP    AG +   V ++ E
Sbjct: 54  VEIDAAQLRENLRLLQRRLGSNVEIWAVVKANAYGHGAQLVAPVAVAAGAKGLCVATLAE 113

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR    QA + VL  ++   E +      L   ++   Q+    ++    G   P  
Sbjct: 114 GIELRQTGLQAPVLVLGALNTWAELQQAMAARLEVSLTCTDQIPLMRQVARWAGRPIPVH 173

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + VDTG  RLG+  +EA             +   + SHLA AD+P S V   Q  RF  +
Sbjct: 174 VNVDTGMTRLGIPWKEAAAVWGQICRIPELEGCSLFSHLATADEPHSPVMEQQHARFAQV 233

Query: 186 ISHYKGIEASLAS-----SSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVVTAE 239
           +   +     L +     S+G L   + H+   R G+ LYG +   +   P +Q ++  +
Sbjct: 234 VEQIRQAGDPLPALHLDNSAGALT--HLHYSRVRLGLVLYGLSPAPHLPVPGLQPILRLK 291

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           AR+  I+   A   VSYG +   +R S IA  AIGYADG P  LSG         +L  +
Sbjct: 292 ARLSHIQTVPAQTGVSYGHRYITSRPSRIATLAIGYADGIPRRLSG---------WL--R 340

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTN 354
           G+++G ++  +G ITMD  M+D+T+   I+VGD +++ GP+     + + D A   GT +
Sbjct: 341 GWVRGGLIQQVGTITMDQCMWDVTERPDIQVGDVVELLGPNLANAGLSVQDWADQLGTIS 400

Query: 355 YDLLVRIGTRYAKF 368
           Y+LL  +  R  + 
Sbjct: 401 YELLCGLSARLPRV 414


>gi|323190084|gb|EFZ75362.1| alanine racemase [Escherichia coli RN587/1]
          Length = 261

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 17/249 (6%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  F T
Sbjct: 23  MKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNT 82

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEA 240
                 G + S+A+S GILL P  HF   RPGI LYG +   ++S       Q V++  +
Sbjct: 83  FCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTS 141

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R+  AGE V YGG     RD+ + V A+GY DGYP          +PS   G   
Sbjct: 142 SLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---GTPV 190

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R
Sbjct: 191 LVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITR 250

Query: 361 IGTRYAKFY 369
           + +R A  Y
Sbjct: 251 LTSRVAMKY 259


>gi|189425818|ref|YP_001952995.1| alanine racemase [Geobacter lovleyi SZ]
 gi|189422077|gb|ACD96475.1| alanine racemase [Geobacter lovleyi SZ]
          Length = 380

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 181/387 (46%), Gaps = 48/387 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +IDL AL+ N+  + + S  +R+A  AVVK +AYG G  +++  L   GV  F V  + E
Sbjct: 10  EIDLGALRENYSVVRS-SVPSRSAVLAVVKADAYGHGFLEVSKELERQGVDAFGVAFLAE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY----SKLMSCGVSHP 123
            ++LR       + +L GI+PGQE+      +   + S+ QL        KL    + H 
Sbjct: 69  AIQLRKAGIDKPVLLLGGIYPGQERKCVGYGISSAVFSLEQLKALDLAAGKLYRKALVH- 127

Query: 124 YALQVDTGFNRLGL------SLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHV 174
             L+VDTG  RLG+      +L  AL    N +      L  +ISH A A   D+   + 
Sbjct: 128 --LKVDTGMGRLGIPYDQVPALLNALKLLPNIY------LEGVISHFASADELDESGQYF 179

Query: 175 NSVQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGG--TDKIN 227
             +Q ERF   +   +    S     +A+S+G LL       L RPGI+LYG   +    
Sbjct: 180 TRLQGERFGWAVEQIRKAGFSPRYIHIANSAGALLNDYPFCNLVRPGIALYGALPSPDFQ 239

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+  +++I +++       +SYG +    + +LIA   +GYADGYP  L+   
Sbjct: 240 GRLSLRPVMRLKSKIAMLKWVEPATTISYGRRFTAEQRTLIASVPVGYADGYPRALTN-- 297

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----- 342
                     G+  ++G    + G + MD  M D+T    + VGD + + G D K     
Sbjct: 298 ---------KGQVLVRGERAQVSGTVCMDWLMLDVTHIPGVAVGDDVTLIGEDRKGNTVF 348

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
            ++VA  +GT  Y+LL  I  R  + Y
Sbjct: 349 AEEVAHWAGTIPYELLCGISKRVPRVY 375


>gi|73490247|dbj|BAE19803.1| alanine racemase [Pseudomonas fluorescens]
          Length = 357

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/375 (30%), Positives = 189/375 (50%), Gaps = 36/375 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     ++G A+  AV+K +AYG G  + A AL       F V  +EE
Sbjct: 5   RALIDLQALRHNYQLAREVTG-AKALAVIKADAYGHGAVRCAEALQETA-DGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +  I +L G     E  +I + +   V+ S+ QL    K     +S P   
Sbjct: 63  ALELRAAGIRGPILLLEGFFEADELPLIVEHDFWCVVHSLWQLEAIEK---AALSQPITV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLE 180
            L++D+G +R+GL      D+   ++ + L  G+++ I+  SH A AD+     ++ QL 
Sbjct: 120 WLKLDSGMHRVGL---HPADY-QAAYRRLLASGKVAKIVLMSHFARADELHDSSSTEQLA 175

Query: 181 RFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT--DKINK-SHPMQTV 235
            F       +G+ A  SL +S  +L  P       RPGI LYG T  D+ N  +  +Q V
Sbjct: 176 IFD---KARQGLVAQISLRNSPAVLGWPQIPSDWVRPGIMLYGATPFDEPNAVASRLQPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E++II +R+  AGE V YG +   T+ + + V A+GYADGYP          +P+  
Sbjct: 233 MTLESKIISVRELPAGEPVGYGARFVTTQPTRVGVVAMGYADGYP--------RQAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    ++G    ++G+++MDM   D+T      +G  ++++G +I   DVA A+ T  Y
Sbjct: 283 -GTPVLVEGQRSQLVGRVSMDMLAVDLTHIPQAGLGSTVELWGKNILASDVAKAADTIPY 341

Query: 356 DLLVRIGTRYAKFYT 370
            +   +  R  + Y+
Sbjct: 342 QIFCNL-RRVPRLYS 355


>gi|310767806|gb|ADP12756.1| Alanine racemase, catabolic [Erwinia sp. Ejp617]
          Length = 356

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 175/368 (47%), Gaps = 40/368 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL+ N       +G AR  +VVK NAYG G + +  +L       F + ++EE + 
Sbjct: 9   INRAALRQNLAIARYTAGGARLWSVVKANAYGHGIDHVWQSLNE--TDGFALLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    +  I +L G  HP   +I+    L   + S  Q+   + L    +S P    L+
Sbjct: 67  LRERGWKKPILLLEGFFHPDDLQILDRYRLTTSVHSNWQI---NALAQAKLSAPIDIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +++G NRLG   +      H  + K      +G+L+L+ +H A A+           E  
Sbjct: 124 MNSGMNRLGFQPER----VHGVWQKLRSLENVGELTLM-AHFADAETAEGVA-----EPL 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVV 236
           + +    +G+E   SLA+S+  L  P  H+   RPGI LYG    G  +      +Q V+
Sbjct: 174 KRIEQAAEGLECPRSLANSAATLWHPQTHYDWVRPGIILYGASPSGQWQDIAGSGLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + +I +++  AG  V YG + +      I V A GYADGYP         H+P+   
Sbjct: 234 TLTSEVIAVQQLAAGSGVGYGSRYRANCSQRIGVVACGYADGYP--------RHAPT--- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G    I+G ++MDM   D+T      +G  ++++G +IK+DDVA ASGT  Y+
Sbjct: 283 GTPIRVDGEKTQIVGAVSMDMITVDLTPCPQAGIGSQVELWGDNIKIDDVASASGTVGYE 342

Query: 357 LLVRIGTR 364
           L+  +  R
Sbjct: 343 LMCALAPR 350


>gi|332970508|gb|EGK09497.1| alanine racemase [Desmospora sp. 8437]
          Length = 412

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 176/392 (44%), Gaps = 44/392 (11%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           SN + R     IDL A+ +N       L    R  A VK NAYG G   ++ A   AG  
Sbjct: 4   SNRYFRDTVALIDLDAITHNVSQFRRRLPAGCRLMAAVKANAYGHGSVPVSRAALAAGAT 63

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVL-----YGIHP----GQEKIIFDTNLIPVISSVPQL 109
           D  V  ++E ++LR     A I VL      GI P    G    +FD   +  I+ V   
Sbjct: 64  DLAVAFLDEALELRAGGITAPILVLGHIPDRGIEPALKAGITLTVFDEAGVEKIAEVAAR 123

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
           T        G      ++VDTG  R+GL    A+ F           +  + +H A AD+
Sbjct: 124 T--------GRRARLHIKVDTGMGRIGLWEDAAVPFAERWARDPRVTVEGLFTHFATADE 175

Query: 170 PSSHVNSVQLERFRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTD 224
                   Q  RF  ++     +GI   +   A+S+  +  P +   + R GIS+YG   
Sbjct: 176 MDKSYAVEQHGRFLRVLQQLQDRGIRIPVVHCANSAAAIDLPEWSHGMIRLGISMYGYYP 235

Query: 225 KINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
               S     ++  +T + RI+ +++  AG  +SYG    ++ +  IA   IGYADGY  
Sbjct: 236 SAQVSRVRVRLRPALTLKTRIVHLKRPPAGTGISYGKTAMVSGNQWIATLPIGYADGYSR 295

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--- 338
            LS             G   ++G  VP++G++ MD TM D+T ++ ++VGD + ++G   
Sbjct: 296 QLSNR-----------GAALVRGRRVPVIGRVCMDQTMLDVTSAMPVKVGDEVVLYGKQG 344

Query: 339 -PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             +I +D+VA   GT +Y++   +G R  + Y
Sbjct: 345 NEEIHVDEVADLLGTISYEITCMLGHRVPRLY 376


>gi|284033912|ref|YP_003383843.1| alanine racemase [Kribbella flavida DSM 17836]
 gi|283813205|gb|ADB35044.1| alanine racemase [Kribbella flavida DSM 17836]
          Length = 375

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 176/378 (46%), Gaps = 35/378 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N  ++ A   +A    VVK + YG G   +A A   AG     V  +EE ++
Sbjct: 8   VDLAAIRHNVAALRARLSSAELMTVVKADGYGHGMAPVARAARQAGADWIGVAVLEEALE 67

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---LQ 127
           LR       IF  +   PG+       N I + +  P   +    ++ GV+   A   L+
Sbjct: 68  LRAAGDNGPIFC-WLTTPGEPLARAIANDIDLSAGAP---WEIDELAAGVTDRPARVHLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSL--IISHLACADDPSSHVNSVQLERFRT 184
           +DTG  R G   +E       +   +K G++ +  I SHLA +D+P S VN  Q+  F +
Sbjct: 124 IDTGLGRGGAVPEEWPTLIRAALKEQKTGRIVITGIWSHLASSDEPKSPVNEAQVATFES 183

Query: 185 LISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            ++  +  G++     LA+S G L  P  HF L RPGI+ YG    G    +    ++  
Sbjct: 184 AVAVAESLGVDPGFKHLANSGGTLALPETHFDLVRPGIATYGLSPFGHALPSAELGLRPA 243

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  AR+ + ++  AG  VSYG      + S + +  +GY DG P   S           
Sbjct: 244 MTLRARLAMAKRVPAGAGVSYGLTWTAPKPSTLGLVPLGYGDGLPRHASN---------- 293

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
            G    + G    ++G+I MD  + ++ D      GD + +FGP    +   DD A A+G
Sbjct: 294 -GAPVQVHGIRRSVVGRICMDQCVVNLDDG-DAAAGDEVVLFGPGDHGEPTADDWADAAG 351

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++ R+G R  + Y
Sbjct: 352 TINYEIVTRLGPRIPRRY 369


>gi|113868091|ref|YP_726580.1| alanine racemase [Ralstonia eutropha H16]
 gi|123032940|sp|Q0K9V9|ALR_RALEH RecName: Full=Alanine racemase
 gi|113526867|emb|CAJ93212.1| alanine racemase [Ralstonia eutropha H16]
          Length = 373

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 162/361 (44%), Gaps = 22/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +  +R  AVVK NAYG G  ++  AL   G   F +  + E V 
Sbjct: 9   IHQPALANNLDIIRGKAPESRIWAVVKANAYGHGIRRVFAALR--GADGFGLLDLNEAVL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           LR    Q  I +L G   P    +I    L   I    QL     L S     P A+Q+ 
Sbjct: 67  LRDLGWQGPILLLEGFFQPQDVAVIEQYRLTTAIHCDEQLRM---LESARAKGPLAIQLK 123

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            +TG NRLG     A   T     + +  +  I+     +D  S+   + Q+E F    +
Sbjct: 124 LNTGMNRLGF--HPAAYRTAWERARAMPCVGSIVHMTHFSDADSARGVAHQIEAFDAATA 181

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARII 243
           +  G EASL++S+ +L  P  H    RPGI LYG    G D       +Q  ++  + +I
Sbjct: 182 NLPG-EASLSNSAAVLWHPQAHRAWVRPGIILYGASPTGRDADIAGTGLQPAMSLHSELI 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            ++    G+ V YG      R   I V A GYADGYP   SG   + +P         + 
Sbjct: 241 SVQDLQPGDTVGYGSLFTAERPMRIGVVACGYADGYPRHASGWGEQRAPV-------LVD 293

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ++G+++MDM   D+T      VG  + ++G  + +D+VA ASGT  Y+L+  +  
Sbjct: 294 GVRTELVGRVSMDMLCVDLTPCPKARVGSPVTLWGQGLPIDEVAQASGTVGYELMCALAP 353

Query: 364 R 364
           R
Sbjct: 354 R 354


>gi|227355801|ref|ZP_03840194.1| alanine racemase, catabolic [Proteus mirabilis ATCC 29906]
 gi|227164120|gb|EEI49017.1| alanine racemase, catabolic [Proteus mirabilis ATCC 29906]
          Length = 370

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 178/370 (48%), Gaps = 35/370 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ I+L AL +N   + + +  ++  +VVK +AYG G   + PAL +     F +  +++
Sbjct: 6   KISINLDALSHNLSVIKSKAQGSKVWSVVKADAYGHGLSCVWPALSH--TDGFALIELDK 63

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            + LR       I +L G   P    ++   +L  V+ +  Q   +  +    +  P   
Sbjct: 64  AIMLREQGWVGPILLLEGFFKPDDVYLLERYSLTTVVHADWQ---FEAIEQAQLERPINI 120

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLERF 182
            L++++G NRLG   ++       +  K++  +  I+  SH A AD      + + +   
Sbjct: 121 YLKLNSGMNRLGYRPEDYQQAIQRA--KRITNIGSIVQMSHFANAD------SGLNMATQ 172

Query: 183 RTLI--SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVV 236
           + +I  S    +   LA+S+ IL  P  H    RPGI LYG    G  +      +Q V+
Sbjct: 173 KQIIDSSMVNDLPRCLANSAAILFEPQTHHSWVRPGIILYGVSPSGVWQDIADFDLQPVM 232

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + ++ I+    GE + YG +    RD  IAV A GYADGYP         H+P    
Sbjct: 233 TFNSEVLAIQSVKKGEQIGYGSRYTAQRDMRIAVVACGYADGYP--------RHAPD--- 281

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    +KG+   ++G+I+MDM   D+TD   +E G  ++++G  + +D+VALA GT  Y+
Sbjct: 282 GTPVIVKGHKTQLVGRISMDMLTIDVTDLPDVEHGSPVELWGNQLPVDEVALACGTIGYE 341

Query: 357 LLVRIGTRYA 366
           LL  I  R A
Sbjct: 342 LLCAIAPRVA 351


>gi|311279308|ref|YP_003941539.1| alanine racemase [Enterobacter cloacae SCF1]
 gi|308748503|gb|ADO48255.1| alanine racemase [Enterobacter cloacae SCF1]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 180/369 (48%), Gaps = 42/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL AL++N   +   +  +R  +VVK NAYG G ++I  AL       F + ++EE + 
Sbjct: 9   LDLQALRHNLSVVRRAAPGSRVWSVVKANAYGHGIDRIWSALKE--TDGFAMLNLEEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYAL--Q 127
           LR    +  + +L G    ++  +FD   L   + S  Q+     L +  +  P  +  +
Sbjct: 67  LRERGWKGPVLMLEGFFQAEDLALFDKYRLTTTVHSNWQI---KALQNARLHAPLDVYVK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNS-VQLER 181
           V++G NRLG + Q      H ++ +      +G ++L+ SH A A+ P     + VQ+E+
Sbjct: 124 VNSGMNRLGFTPQR----LHTAWQQLRALPNVGDMTLM-SHFADAEKPDGIREAMVQIEQ 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTV 235
                +   G   SL++S+  L  P  HF   RPGI LYG +      D  N    ++ V
Sbjct: 179 ----AAEGLGCPRSLSNSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANSG--LKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II I+    G+ V YG   + T++  I + A GYADGYP     +  +++P   
Sbjct: 233 MTLSSEIIGIQNLKPGDTVGYGRLYRATQEQRIGIVACGYADGYPR----IAPDNTPV-- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
                 + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA   GT  Y
Sbjct: 287 -----LVDGVRTGTVGRVSMDMLAVDLTPCPQAGIGTPVELWGNEIKIDDVASCCGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALAPR 350


>gi|168178920|ref|ZP_02613584.1| alanine racemase [Clostridium botulinum NCTC 2916]
 gi|182669985|gb|EDT81961.1| alanine racemase [Clostridium botulinum NCTC 2916]
          Length = 386

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 178/375 (47%), Gaps = 27/375 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL +L++N   +  + GN     V+K NAYG G  +IAP L   GV    V  + E +
Sbjct: 11  EIDLDSLQHNLKQIKKICGNKEIIGVIKANAYGHGSMEIAPTLLENGVSRLAVAVLSEAM 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYALQ 127
           +LR+   +  I +L         ++ D ++   + S       SK  L+   +   + + 
Sbjct: 71  ELRMSGIKEPIMILGYTPCALGDMLLDNDIEQSVYSYNDALELSKIALLKRKILKIHIV- 129

Query: 128 VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VDTG  R+G L  +E+++  +        Q+  + SH + AD+        Q+  +   I
Sbjct: 130 VDTGMGRIGFLPTKESVEDVYKISKLPNIQIEGVFSHFSSADELDKDYTLYQMNNYNEFI 189

Query: 187 S--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
           +    K I+     +A+S+ I+   + H    R GI +YG       +  +  ++ V++ 
Sbjct: 190 NKLEEKNIQVHIKHIANSAAIIDLESTHLDAVRAGIIMYGYYPSNYVLRNNIKLKPVMSL 249

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS             G
Sbjct: 250 KTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN-----------KG 298

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           K  + G + P++G++ MD  M D+T   +++VGD + I G +       +D+A   GT +
Sbjct: 299 KVIVNGKLAPVIGRVCMDQCMIDVTSIENLKVGDVVTIMGQENGVSYTAEDIASQIGTIS 358

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  +  R  + Y
Sbjct: 359 YEVICNVNKRVPRVY 373


>gi|317492318|ref|ZP_07950747.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919657|gb|EFV40987.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 178/370 (48%), Gaps = 36/370 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  IDL+AL +N   +   +  A+  +VVK NAYG G  +I  AL  A    F +  +E
Sbjct: 5   IRATIDLSALTHNLDQIRQQTPEAKIWSVVKANAYGHGLSRIWRAL--AKTDGFALLDIE 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E + LR    Q  I +L G    Q+  + D   L   I +  QL    +         Y 
Sbjct: 63  EAILLREQGWQGPILLLEGFFQPQDLQLIDRYRLTTTIHNESQLQILGRARLSAPVDIY- 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD------PSSHVNSVQL 179
           L+V+TG +RLG   ++ +   H++          +++H A AD+      P +  N+  +
Sbjct: 122 LKVNTGMHRLGFMPEQLMAIYHSARALPNVDHITLMTHFANADNHLGVESPLAAFNAAAV 181

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQT 234
           +     IS  +     LA+S+  L     H    RPGI LYG +       I +SH ++ 
Sbjct: 182 D-----ISAPR----CLANSAATLWHQPTHADWVRPGIVLYGASPTGRWHDIAESH-LRP 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + II I+   +G+ V YG + +  +   I + A GYADGYP         H+ S 
Sbjct: 232 VMSLRSEIIAIQNIQSGDSVGYGSRYQAVQPQRIGIVACGYADGYP--------RHALS- 282

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G   ++ G    +LG ++MDM   D+T    ++VG+ ++++G ++ +DDVA ++GT  
Sbjct: 283 --GTPVWVSGQRTQLLGTVSMDMLAIDLTALPEVQVGESVELWGQNLPVDDVAQSAGTIG 340

Query: 355 YDLLVRIGTR 364
           Y+LL  +  R
Sbjct: 341 YELLCAVAPR 350


>gi|167722932|ref|ZP_02406168.1| alanine racemase [Burkholderia pseudomallei DM98]
          Length = 349

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 172/362 (47%), Gaps = 27/362 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  ++E V
Sbjct: 8   RIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           ++R       + +L GI    +  I D + + V  +V     +  L +   + P  +Q  
Sbjct: 66  RVRELGWTKPVLLLEGIFEAADVEIADRHRLTV--AVHGDEQFKLLTAAKTTRPIDIQLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG            +     +G+++L++ H A AD+        Q+  F    
Sbjct: 124 MNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMM-HFANADEGEI---DWQMSVFDAAT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
               G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +RI
Sbjct: 180 QGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTSRI 238

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    GE V YG      R+  I V A GYADGYP         H+P+   G    +
Sbjct: 239 IGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYP--------RHAPT---GTPIAV 287

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+  + 
Sbjct: 288 DGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCALA 347

Query: 363 TR 364
            R
Sbjct: 348 RR 349


>gi|295095597|emb|CBK84687.1| alanine racemase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 182/371 (49%), Gaps = 44/371 (11%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL ALK+N   +   +  +R  +VVK NAYG G ++I  AL   G   F + ++EE +
Sbjct: 8   QLDLQALKDNLQIVRRAAPGSRVWSVVKANAYGHGIDRIWSAL--GGTDGFALLNLEEAI 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL--Q 127
            LR    +  I +L G    Q+  + D   +   +SV        +    +  P  L  +
Sbjct: 66  LLRERGWKGPILLLEGFFHAQDLPLLDKYRL--TTSVHSNWQIKAIQDAKLHAPLDLYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-----KKLGQLSLIISHLACADDPSSHVNS-VQLER 181
           V++G NRLG   +      H  +      K +G+++L+ +H A A+ P    ++ V++E+
Sbjct: 124 VNSGMNRLGFQPER----VHTVWQQLRALKNVGEMTLM-AHFADAEKPDGIADAMVRIEQ 178

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G++   SL++S+  L  P  H+   RPGI LYG +      D  N    ++
Sbjct: 179 A------AEGLDCPRSLSNSAATLWHPEAHYNWVRPGIVLYGASPSGQWQDIANSG--LK 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AG+ V YG + +   +  I + A GYADGYP          +PS
Sbjct: 231 PVMTLRSEIIGVQTLKAGDTVGYGSRYRAAGEQRIGIVAGGYADGYPRI--------APS 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G   ++ G     +G ++MDM   D+T      +G  ++++G ++K+DDVA A+GT 
Sbjct: 283 ---GTPVWVDGVRTGTVGTVSMDMLAIDLTPCPQAGIGSPVELWGNEVKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALAPR 350


>gi|87122505|ref|ZP_01078385.1| biosynthetic alanine racemase [Marinomonas sp. MED121]
 gi|86162298|gb|EAQ63583.1| biosynthetic alanine racemase [Marinomonas sp. MED121]
          Length = 359

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 180/369 (48%), Gaps = 22/369 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L   IDL A+K+N+     L  N +  AVVK NAYG G  ++A  L +  V  F V ++E
Sbjct: 5   LTAHIDLAAIKHNYLLAKKLQPNTKAFAVVKANAYGHGAVEVAKYLDDI-VDAFAVAAIE 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPY 124
           E ++LR     + I +L G+    E ++  + N    I +  QLT +   ++  +     
Sbjct: 64  EAIELREAGVSSPILLLEGVFESAEWQVCENHNFWVAIENQTQLTDF---IAANIQIDKV 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L++D+G +RLG+    A  F      N  +G++ ++++H + ADD  S   S QL  F 
Sbjct: 121 FLKLDSGMHRLGVQPSSADKFIELLEHNPNVGEV-VLMTHFSSADDLDSPATSEQLAVFD 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH-PMQTVVTAEA 240
            +   +  ++ S+A+S+  L          RPGI LYG +  D+I+     ++  +T  +
Sbjct: 180 QVHRQFSQLDVSVANSAATLKWQLPEGGWIRPGIMLYGISPFDEISAQELGLKPAMTLTS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+   GE V Y           IA  A+GY DGYP       + H   V      
Sbjct: 240 KIISLREVKDGEAVGYARAYVAKGQRQIATVAVGYGDGYPRM-----ANHQTPVL----- 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            ++  M  + G+++MDM   D+T+    +VGD + ++G    ++DVA  S T  Y+L+ R
Sbjct: 290 -VEQAMCCLSGRVSMDMITLDVTELGETQVGDEVILWGEKNPVEDVAAHSSTIAYELVTR 348

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 349 MTGRAKRQY 357


>gi|322807721|emb|CBZ05296.1| alanine racemase [Clostridium botulinum H04402 065]
          Length = 386

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 178/381 (46%), Gaps = 39/381 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV    V  + E +
Sbjct: 11  EIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSRLAVAVLSEAM 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           +LR+   +  I +L         ++ D N+   + S       SK+    V     L+  
Sbjct: 71  ELRMSGVKEPIMILGYTPWALGDMLLDNNIEQSVYSYNDALELSKI---AVLKRKILKIH 127

Query: 128 --VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
             VDTG  R+G L  +E+++  +        ++  + SH + AD+        Q+ ++  
Sbjct: 128 IVVDTGMGRIGFLPTKESVEDVYKISKLPNIKIEGLFSHFSSADELDKDYTLYQMNKYNE 187

Query: 185 LIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGG-------TDKINKSHPM 232
            I+    K I+     +A+S+ I+   N H    R GI +YG         D IN    +
Sbjct: 188 FINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRDNIN----L 243

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS        
Sbjct: 244 KPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN------- 296

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +++A 
Sbjct: 297 ----KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAENIAS 352

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT +Y+++  +  R  + Y
Sbjct: 353 QIGTISYEVICNVNKRVPRVY 373


>gi|308447430|ref|XP_003087428.1| hypothetical protein CRE_20666 [Caenorhabditis remanei]
 gi|308256594|gb|EFP00547.1| hypothetical protein CRE_20666 [Caenorhabditis remanei]
          Length = 326

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 159/336 (47%), Gaps = 22/336 (6%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI- 93
           +VK NAYG G +    AL NA    F V  + E +++R    Q  I ++ GI    E I 
Sbjct: 1   MVKANAYGHGVKDCLAAL-NA-TDAFGVACLAEALEIRALGYQQPITLIEGIFSADEMIS 58

Query: 94  IFDTNLIPVISSVPQLTFYS--KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
           + + NL  V+   PQL +    K           +++++G NRLG    E ++   +   
Sbjct: 59  VLENNLEIVVHHQPQLAWLRAHKKQYIDKGLKVWVKLNSGMNRLGFKFAEIIEVIQSL-- 116

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
           K  G   ++  H A AD     +N  Q ++F  + +  + I AS  +S+ I   P  +F 
Sbjct: 117 KAEGFTCVLAMHFANADADHHPLNEQQKDQFLQVKAACEPILASCCNSAAIFKWPELNFD 176

Query: 212 LTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
             RPGI LYG +   D+      ++ V++  A II +    AGE V YG       +  I
Sbjct: 177 FVRPGIMLYGASPFADRSVAELDIKPVMSFTAEIIALNHIQAGESVGYGSTFFSKNEMDI 236

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
           A+ +IGY DGYP T    +              I G M  I+G++ MDM   D+T  L  
Sbjct: 237 AIVSIGYGDGYPRTFPQQNYVS-----------INGQMTAIIGRVAMDMIAIDVT-GLDA 284

Query: 329 EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +G  ++++G D  +DDVA A+GT  Y+LL R+  R
Sbjct: 285 PLGTVVELWGKDRLVDDVAAANGTIGYELLCRMSAR 320


>gi|154500510|ref|ZP_02038548.1| hypothetical protein BACCAP_04183 [Bacteroides capillosus ATCC
           29799]
 gi|150270741|gb|EDM98037.1| hypothetical protein BACCAP_04183 [Bacteroides capillosus ATCC
           29799]
          Length = 380

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 180/383 (46%), Gaps = 38/383 (9%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I L  L++N+ ++ AL     R   VVK NAYG G   +A  L   G +   V  V+E 
Sbjct: 11  EISLANLEHNYRALRALLPQGCRFLGVVKANAYGNGAVPVAKRLEELGTEYLAVACVDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL----TFYSKLMSCGVSHPY 124
            +LR    +  I VL G  P +     D   + +  +VP L       +  ++ G +   
Sbjct: 71  AELREAGVKTPILVL-GDTPNE--CAADLLRLDLTQNVPDLETARALSAAAVAAGKTMKV 127

Query: 125 ALQVDTGFNRLGLSLQEA-LDFTHNSFN--KKLGQLSL--IISHLACADDPSSHVNSVQL 179
            ++VDTG +RLG    EA +D +  +     +L  L    I +H + +D  +     +Q 
Sbjct: 128 HMKVDTGMSRLGFLCDEAHMDASVEALAVASRLPGLEAEGIFTHFSDSDG-NEEYTMLQF 186

Query: 180 ERFRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHP 231
            RF  ++     +GI   +   A+S  +L  P  +  + RPGI+LYG     D      P
Sbjct: 187 GRFLAVLDRLAERGITFPIRHCANSGAVLHYPCTYLDMVRPGIALYGHYPAPDCEGLDGP 246

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V+  ++RI  +R   AG  VSYG    L RDSL+AV  IGYADG P   S      
Sbjct: 247 GLRPVMELKSRIATVRALPAGTCVSYGRTCTLQRDSLLAVVPIGYADGLPRLCSN----- 301

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                 G +  ++G   PI+G++ MDM M D+TD   ++ GD   ++G D    + ++  
Sbjct: 302 ------GLEMLVRGQRAPIVGRVCMDMCMVDVTDIPGVQPGDVATVYGSDGDETVTVEAA 355

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +GT  Y+LL  +  R  + Y
Sbjct: 356 AERAGTIQYELLCAVSERVPRVY 378


>gi|285019694|ref|YP_003377405.1| alanine racemase [Xanthomonas albilineans GPE PC73]
 gi|283474912|emb|CBA17411.1| probable alanine racemase protein [Xanthomonas albilineans]
          Length = 357

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 171/360 (47%), Gaps = 27/360 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L G  +  AVVK +AYG G    A AL  A    F V  +EE
Sbjct: 5   RALIDLDALRHNYCLARRLGGG-KVLAVVKADAYGHGAVACARAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR     A I +L GI    E  ++    L  V++S  Q+     + +     P  L
Sbjct: 63  ALELRQAGIAAPILLLEGIFEADELPLVAAHRLWCVVASPWQV---EAIAAFDAPQPLCL 119

Query: 127 --QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLERF 182
             ++D+G +RLGL+  +A    H   +  L Q+   +++SH A AD+  S     Q+E F
Sbjct: 120 WLKLDSGMHRLGLA-PDAFRAAHARLSA-LPQVERLVLMSHFARADELESARTLEQVEVF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
           R   +   G E SL +S  +L  P  H    RPG+ LYG             ++ V+T +
Sbjct: 178 RQTTADLAG-EISLCNSPALLGWPQVHSDWARPGLMLYGADPFAAAAALPGELRPVMTLQ 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R    GE V YG +    R + + V AIGYADGYP   S            G  
Sbjct: 237 SKVIAVRDLAPGEPVGYGARFVAPRPTRVGVVAIGYADGYPQFASN-----------GTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G    ++G+++MDM   D+T+     +G  +Q++G   ++D +A    ++ Y LL 
Sbjct: 286 VLIDGMPGELIGRVSMDMLTVDLTEHPQAGLGSVVQLWGAQPRIDALAARCASSAYRLLC 345


>gi|260554562|ref|ZP_05826783.1| alanine racemase [Acinetobacter baumannii ATCC 19606]
 gi|260411104|gb|EEX04401.1| alanine racemase [Acinetobacter baumannii ATCC 19606]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 173/360 (48%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 8   IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAAL-NAS-DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    +  + ++ G+    E  I  +     VI    Q  +  K     ++    + V 
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPIAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG    E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLHIKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   DK      ++ V+T  A II 
Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP         +    F+     I G
Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYP-------RAYVKQNFVA----IDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  +++ G    +DDVA A+GT  Y+LL R+ TR
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELLGNHRLVDDVAEANGTIGYELLCRLSTR 350


>gi|254479071|ref|ZP_05092425.1| alanine racemase [Carboxydibrachium pacificum DSM 12653]
 gi|214034987|gb|EEB75707.1| alanine racemase [Carboxydibrachium pacificum DSM 12653]
          Length = 388

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 180/385 (46%), Gaps = 43/385 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R++++L ++ +N+  +  + G+  +   VVK NAYG G   +A AL   GV    V +VE
Sbjct: 9   RVEVNLDSIVHNFREIKRVVGDRVKVMGVVKANAYGHGAYHVAKALVENGVDYLAVATVE 68

Query: 67  EGVKLRLYTPQARIFVLYGIHP------GQEKII----FDTNLIPVISSVPQLTFYSKLM 116
           E ++LR Y   A + +L G  P        EK +    FD   +  +  +          
Sbjct: 69  EALELRSYGITAPVLIL-GYTPLSQAGEAVEKDVTFTAFDLKYVKELGEIAS-------- 119

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175
             G      +++DTG  R+G +  +  +      +K  G +L  I SH A +D+      
Sbjct: 120 RKGKKAKIHVKIDTGMGRIGYTDFDLAEREIEEMSKLEGIELEGIFSHFATSDEKDKDYA 179

Query: 176 SVQLERFRTLISHY--KGIEASLA--SSSGILLGPNY-HFQLTRPGISLYGG--TDKINK 228
             Q ERF  ++     +G+  +L   ++SG +   NY +  + RPGI+LYG   +D +NK
Sbjct: 180 REQFERFADMLKRLEKRGVNITLKHIANSGAITDLNYAYLDMVRPGITLYGSYPSDDVNK 239

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +  + +I+ I++      +SYG      R S IA   IGYADG    LS   +
Sbjct: 240 ILDLRPAMNFKTKIVYIKEVPENTSISYGRTFITKRPSKIATLPIGYADGLNRLLS---N 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
            H           ++G  VPI+G++ MD TM D+T+   +EVGD + IFG      I  D
Sbjct: 297 NHEV--------LVRGKYVPIVGRVCMDQTMIDVTEVEGVEVGDEVVIFGEQEGKRITAD 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           D+A    T  +++   I  R  + Y
Sbjct: 349 DIAKKLRTIPHEVYCGISRRVPRIY 373


>gi|294667296|ref|ZP_06732516.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292602968|gb|EFF46399.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 366

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 177/356 (49%), Gaps = 25/356 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLAKRLGGS-KALAVVKADAYGHGAVRCAQAL-EPEAYGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR     A I +L G     E ++I + +L  V ++  Q+   ++  S      + L++D
Sbjct: 66  LRQAGIGAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRVW-LKMD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-ALT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
           +     E SL +S G+L  P      +RPG+ LYG          +  ++ V+T  +RII
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTAHTAQLRPVMTLRSRII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YG +    R + + V A+GYADGYP        + +P+   G    + 
Sbjct: 241 SVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLVD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL 
Sbjct: 290 GQVCPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVGALAAQCNVSAYQLLC 345


>gi|30249388|ref|NP_841458.1| alanine racemase [Nitrosomonas europaea ATCC 19718]
 gi|81838719|sp|Q82UR4|ALR_NITEU RecName: Full=Alanine racemase
 gi|30138751|emb|CAD85328.1| Alanine racemase [Nitrosomonas europaea ATCC 19718]
          Length = 362

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 175/370 (47%), Gaps = 32/370 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  I+  AL++N   +      AR  AVVK +AYG G  ++A AL    V  F V  +E
Sbjct: 5   IRAFINCAALRHNLAVVRRHVHQARIMAVVKADAYGHGLLRVARAL--DAVDGFAVLELE 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
             ++LR       I +L G    +E + I    L  VI    QL+        G    + 
Sbjct: 63  AAIQLREAGFSQLILLLEGFFSIEEIEAINHYRLSTVIHCHEQLSMLLAHKKTGKPDIF- 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS-----HLACADD--PSSHVNSVQ 178
           L+++TG NRLG   +E      NS   +L Q    IS     H ACADD   + HV+  Q
Sbjct: 122 LKINTGMNRLGFRPEEG-----NSVLNRLRQWHTDISITLMTHFACADDLLEADHVDQ-Q 175

Query: 179 LERFRTLISHYKG-IEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQT 234
           L  F  L    +G I  +LA+S+ IL  P  H    RPGI LYG +   DK      +Q 
Sbjct: 176 LGSFARLEEKREGCIPRTLANSAAILRYPGTHADWVRPGIILYGASPLPDKTGIELGLQP 235

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  +RII ++     + + YGGQ    +   + V A GYADGYP         H+P+ 
Sbjct: 236 VMTLTSRIIAVQHLDFSDRLGYGGQFVADQPMRVGVVAAGYADGYP--------RHAPT- 286

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G    ++G+++MDM   D++       G  + ++G  + +++VA ++ T +
Sbjct: 287 --GTPVLVNGRRTRLIGRVSMDMLTVDLSGINEAGAGSLVTLWGEGLPVEEVARSAQTIS 344

Query: 355 YDLLVRIGTR 364
           Y+LL  +  R
Sbjct: 345 YELLAALSPR 354


>gi|167572513|ref|ZP_02365387.1| alanine racemase [Burkholderia oklahomensis C6786]
          Length = 374

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 173/363 (47%), Gaps = 29/363 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+  N   +   +  +R  +VVK NAYG   E+I PAL +A      +  ++E V
Sbjct: 8   RIHPDAVARNLAIVRQKAPRSRIWSVVKANAYGHDIERIYPALADA--DGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ- 127
           ++R       I +L GI    +  I D + + V +    QLT    L S   + P  +Q 
Sbjct: 66  RVRELGWTKPILLLEGIFEAADVEIADRHRLTVAVHGDEQLTL---LASAKTTRPIDIQL 122

Query: 128 -VDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +++G NRLG         +   +    +G ++L++ H A AD+        Q+  F   
Sbjct: 123 KMNSGMNRLGYRPGAFRAAWERAAAAPSIGDIALMM-HFANADEGEI---DWQMRAFDAA 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEAR 241
                G E +L++S+ +L  P  H    RPG  LYG +      H    P+Q  +T  ++
Sbjct: 179 TDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHLADVPLQPAMTVTSK 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++   AGE V YG +    R+  I V A GYADGYP         H+P+   G    
Sbjct: 238 IIGVQTLAAGETVGYGRRFTAEREMRIGVVACGYADGYP--------RHAPT---GTPIA 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+LL  +
Sbjct: 287 VDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGAQVRVDDVAEAAGTIGYELLCAL 346

Query: 362 GTR 364
             R
Sbjct: 347 ARR 349


>gi|189485368|ref|YP_001956309.1| alanine racemase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287327|dbj|BAG13848.1| alanine racemase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 385

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 176/358 (49%), Gaps = 31/358 (8%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           ++ + +   V+K NAYG G   +A     AGV    ++S+EEG++ R    ++ I +L  
Sbjct: 40  IAKDTKIMVVIKANAYGHGGVALAKETQRAGVAWIGISSLEEGIQFREAGIKSNILILGN 99

Query: 86  IHPGQE-KIIFDTNLIPVISSV---PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141
           I P +  ++    +L P IS++     L +++  ++  ++  + L++D+G  R+G+  + 
Sbjct: 100 IFPFENFQVAVAHSLTPTISTMSGLAALEYWAVRLNKKIN--FHLKIDSGMGRIGVVPEA 157

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRTLISHYK---GIE--AS 195
           +              ++ + +H A AD DP       QL+ F  ++   +   G++  A 
Sbjct: 158 SYPILQKIVQMPKTNMTGMYTHFAVADTDPV--FTQQQLDIFTNIVKFARINLGLKFIAH 215

Query: 196 LASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGEL 253
            A+S+ +      H  + RPGIS+YG T      +   +++V++ + +II ++K  AG  
Sbjct: 216 AANSAALFRNKRTHLDMVRPGISIYGLTPFKHAERFLKLKSVLSWKTKIIFLKKVPAGFC 275

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           VSYG      R S+IA   +GYADGY   LS                 ++G   PI G+I
Sbjct: 276 VSYGRTFVTNRASVIATIPVGYADGYNRLLSN-----------KCDVLVRGKRCPIAGRI 324

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           TMDMTM D+TD   + +GD + + G      IK+D++A    T NY++   I  R  +
Sbjct: 325 TMDMTMIDVTDVKGVTLGDEVVLIGVQGKEHIKVDELAKIQNTINYEVTSSISVRVPR 382


>gi|257094224|ref|YP_003167865.1| alanine racemase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046748|gb|ACV35936.1| alanine racemase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 367

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 176/368 (47%), Gaps = 27/368 (7%)

Query: 10  KIDLTALKNNW----HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTS 64
           +ID  AL++N+    +      G AR  AVVK NAYG G  + A AL  A V D F +  
Sbjct: 8   RIDGGALRHNYLLARNQARRGEGRARAWAVVKANAYGHGLLRAARAL--ADVADGFALLD 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE V+LR    +  I +L G     +  +    +L  V+  + QL    +  S  V  P
Sbjct: 66  LEEAVRLRDAGIRQPILLLEGFFEAADLAVCAAHDLTLVVHRLEQLQMLRR-ASLPVRLP 124

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERF 182
             L++++G NRLGL+  E                  +++H A AD D      + QLERF
Sbjct: 125 IFLKLNSGMNRLGLTAAELPAVRRELAASPAVSAVTLMTHFAEADGDGGEACITWQLERF 184

Query: 183 RTLISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVV 236
             +++ +        SLA+S+ IL  P       RPGI LYGG+   D+   S  ++ V+
Sbjct: 185 AGMLADWPEAATWPVSLANSAAILRYPQTARDWVRPGIMLYGGSPFADQDAASLGLKPVM 244

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  +RI+ +++   GE V YGG     R + + V A GYADGYP         H+P    
Sbjct: 245 TLHSRILAVQEIAVGERVGYGGTFVARRPTRVGVVACGYADGYP--------RHAPG--- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     LG+++MDM   D+TD  +  V   + ++G  +  D VA A+GT +Y+
Sbjct: 294 GTPIVVAGQATTTLGRVSMDMLACDLTDLPAAGVNSPVVLWGEGLAADAVAAAAGTISYE 353

Query: 357 LLVRIGTR 364
           L   +  R
Sbjct: 354 LFCALARR 361


>gi|74318118|ref|YP_315858.1| alanine racemase [Thiobacillus denitrificans ATCC 25259]
 gi|123611457|sp|Q3SH36|ALR_THIDA RecName: Full=Alanine racemase
 gi|74057613|gb|AAZ98053.1| alanine racemase [Thiobacillus denitrificans ATCC 25259]
          Length = 367

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 173/368 (47%), Gaps = 33/368 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  I   A+ +N       +G AR  AVVK NAYG G  +   AL   G  D F V ++
Sbjct: 4   IKASISADAMAHNLRVARRHAGAARVFAVVKANAYGHGLSR---ALRAFGAADGFAVLTL 60

Query: 66  EEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE   LR       I +L GI   G+     + +L PV+    QL +  +         +
Sbjct: 61  EEAASLRQMGVDKPILLLEGIFDAGEIAACAELDLWPVLHHARQLDWLEQQRPARALEVF 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-----LIISHLACADDPSSHVNSVQL 179
            L+ D+G +RLG  L E     H     ++  L+      +++H A ADD  S   + QL
Sbjct: 121 -LKFDSGMHRLGFPLAE-----HAEVVARVRALAGVARVTLMTHFAQADD--SAGVAWQL 172

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVV 236
           + FR  +  + G+  S A+S+ ++  P       RPGI LYG    TD       ++  +
Sbjct: 173 QPFREALDGH-GLPWSSANSAALMRYPETVGDWVRPGIMLYGASPFTDVPASGLGLEPAM 231

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE + YG   +  +     V A GYADGYP         H+P+   
Sbjct: 232 TLRSEIIAVQTLAAGEGIGYGQTFRADKPMRAGVVACGYADGYP--------RHAPT--- 280

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     LG+++MDM   D+++  +  VG  + ++G  + +DDVA A+GT++Y+
Sbjct: 281 GTPVVVDGRRTRTLGRVSMDMLCVDLSECPAAGVGSAVVLWGDGLPVDDVAAAAGTSSYE 340

Query: 357 LLVRIGTR 364
           LL  +  R
Sbjct: 341 LLCALAPR 348


>gi|166713563|ref|ZP_02244770.1| alanine racemase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 366

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 177/357 (49%), Gaps = 27/357 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N+     L G+ +  AVVK +AYG G  + A AL       F V  +EE ++
Sbjct: 8   IDLEALRHNYRLAKRLGGS-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVACIEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A I +L G     E ++I + +L  V ++  Q+   +   S      + L++D
Sbjct: 66  LRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQSPRPLRVW-LKMD 124

Query: 130 TGFNRLGLSLQEALDFTHNSFN-KKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLI 186
           +G +RLGLS +   DF       + L Q++  ++++HLA AD+        Q   F  L 
Sbjct: 125 SGMHRLGLSPE---DFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDQQAVAF-ALS 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVTAEARI 242
           +     E SL +S G+L  P      +RPG+ LYG      D  N +  ++ V+T  +RI
Sbjct: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQ-LRPVMTLRSRI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R    GE V YG +    R + + V A+GYADGYP        + +P+   G    +
Sbjct: 240 ISVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYP--------QFAPN---GTPVLV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            G + P++G+++MDM   D+TD     +G  +Q++G   ++  +A     + Y LL 
Sbjct: 289 DGQVCPLIGRVSMDMLTVDLTDHPQAAMGATVQLWGQAPRVGPLATQCNVSAYQLLC 345


>gi|213964899|ref|ZP_03393098.1| alanine racemase [Corynebacterium amycolatum SK46]
 gi|213952435|gb|EEB63818.1| alanine racemase [Corynebacterium amycolatum SK46]
          Length = 537

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 180/388 (46%), Gaps = 45/388 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++L A+ +N  ++ A++G +   AVVK + Y  G  + A A  + G     V +++E + 
Sbjct: 13  VNLDAITHNVKTVKAIAGVSEFMAVVKADGYSQGALQTARAALDGGATQLGVATIDEALS 72

Query: 71  LR--LYTPQ---------ARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSC 118
           +R  L T           A I+        Q  +  + +L +P ++    +    + +S 
Sbjct: 73  VREELRTTLDDGHAIPILAWIWDAAATSLVQRAVAANIDLGLPSMAHALAVANAGRALS- 131

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN----KKLGQLSLI--ISHLACADDPSS 172
            V+    + VDTG  R G S+    DF H         K G L++    +H ACAD+P +
Sbjct: 132 -VTPRVTVMVDTGLGRSGFSMANG-DFEHAVAQLVELHKTGALNITGAFTHFACADEPGN 189

Query: 173 HVNSVQLERFRTLISHYKGIEASL-------ASSSGILLGPNYHFQLTRPGISLYGGTDK 225
                Q + FR  I+  +  EA L       A+S   L  P+  F + RPG+++YGG   
Sbjct: 190 ESVDKQAQNFRAAIAALR--EAGLDELINHAANSPASLSRPDLAFDMVRPGLAIYGGEPI 247

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +  +H ++  +  EA +IL++K  AG+ VSYG      RD+ I +   GYADG   + SG
Sbjct: 248 VGSTHGLRPAMRWEASVILVKKLPAGQSVSYGQTWTADRDTTIGIVPCGYADGMMRSASG 307

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DI 341
              E S          I G   P +G++ MD  + D+     +EVGD   I G     + 
Sbjct: 308 R-FEVS----------INGTRYPQVGRVCMDQFVVDLGPDTDVEVGDTAVIVGDPTLGEP 356

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            LDD+A ASGT NY++L     R  + +
Sbjct: 357 GLDDLAKASGTINYEILTAPKGRSERKW 384


>gi|262375308|ref|ZP_06068541.1| alanine racemase [Acinetobacter lwoffii SH145]
 gi|262309562|gb|EEY90692.1| alanine racemase [Acinetobacter lwoffii SH145]
          Length = 356

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 175/367 (47%), Gaps = 37/367 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+  A+  ++VK NAYG G +    AL       F V  ++E ++
Sbjct: 8   IDSAALQYNLNRVKQLAPTAKIVSMVKANAYGHGVKDCLAALSETDA--FGVACLQEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQL--------TFYSKLMSCGVS 121
           +R       I ++ G+    E  I+ + N+  V+    QL        T+ +K +   V 
Sbjct: 66  IRELGYLQPITLIEGVFSADEMPIVIEQNIEVVVHHQAQLDWLLAHKETYIAKDLKVWV- 124

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLE 180
                ++++G NRLG  +    D  H    K  G   ++  H A AD  + H +N  Q+ 
Sbjct: 125 -----KLNSGMNRLGFKIDVIKDVIHTL--KAEGFSCVLAMHFANAD--AEHPLNDEQIR 175

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVT 237
           +F  + +    I AS  +S+ I   P  HF   RPGI LYG T   D+      ++ V+T
Sbjct: 176 QFLEIKNDCAPILASCCNSAAIYKYPELHFDYVRPGIMLYGATPFADRDVHDLDLKPVMT 235

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A II + +  AGE V YG      ++  +A+ +IGY DGYP      +       ++ 
Sbjct: 236 FTAEIIALNEIQAGEHVGYGSTFTADQNMTLAIVSIGYGDGYPRAFPKQN-------YVA 288

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               I G    ++G++ MDM   D+T  L +++G  ++++G    +DDVA A+GT  Y+L
Sbjct: 289 ----INGQQTRVIGRVAMDMIAIDVT-GLDVQLGTEVELWGKTRLIDDVAEANGTIGYEL 343

Query: 358 LVRIGTR 364
           L R+  R
Sbjct: 344 LCRLSNR 350


>gi|170759362|ref|YP_001788727.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406351|gb|ACA54762.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
          Length = 386

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 176/377 (46%), Gaps = 31/377 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV    V  + E +
Sbjct: 11  EIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGSMEIAPTLLENGVSRLAVAVLSEAM 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           +LR+   +  I +L         ++ D ++   + S       SK+    V     L+  
Sbjct: 71  ELRMSGIKEPIMILGYTPCALGDMLLDNDIEQSVYSYNDALELSKI---AVLKRKILKIH 127

Query: 128 --VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
             VDTG  R+G L  +E+++  +        Q+  + SH + AD+        Q+  +  
Sbjct: 128 IVVDTGMGRIGFLPTKESVEDVYKISKLPNIQIEGVFSHFSSADELDKDYTLYQMNNYNE 187

Query: 185 LIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
            I+    K I+     +A+S+ I+   + H    R GI +YG       +  +  ++ V+
Sbjct: 188 FINKLEEKNIQVHIKHIANSAAIIDLESTHLDAVRAGIIMYGYYPSNYVLRNNIKLKPVM 247

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS            
Sbjct: 248 SLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN----------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
            GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D+A   GT
Sbjct: 297 KGKVIVNGKLAPVIGRVCMDQCMIDVTSIENLKVGDVVTIMGEENGVSYTAEDIASQIGT 356

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y+++  +  R  + Y
Sbjct: 357 ISYEVICNVNKRVPRVY 373


>gi|167897553|ref|ZP_02484955.1| alanine racemase [Burkholderia pseudomallei 7894]
 gi|167922125|ref|ZP_02509216.1| alanine racemase [Burkholderia pseudomallei BCC215]
          Length = 374

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 172/363 (47%), Gaps = 29/363 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  ++E V
Sbjct: 8   RIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ- 127
           ++R       + +L GI    +  I D + + V +    QL     L +   + P  +Q 
Sbjct: 66  RVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHCDEQLKL---LTAAKTTRPIDIQL 122

Query: 128 -VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +++G NRLG            +     +G+++L++ H A AD+        Q+  F   
Sbjct: 123 KMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMM-HFANADEGEI---DWQMSVFDAA 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEAR 241
                G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +R
Sbjct: 179 TQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTSR 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++    GE V YG      R+  I V A GYADGYP         H+P+   G    
Sbjct: 238 IIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYP--------RHAPT---GTPIA 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+  +
Sbjct: 287 VDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCAL 346

Query: 362 GTR 364
             R
Sbjct: 347 ARR 349


>gi|167827477|ref|ZP_02458948.1| alanine racemase [Burkholderia pseudomallei 9]
 gi|167914212|ref|ZP_02501303.1| alanine racemase [Burkholderia pseudomallei 112]
 gi|226195224|ref|ZP_03790815.1| alanine racemase [Burkholderia pseudomallei Pakistan 9]
 gi|225933029|gb|EEH29025.1| alanine racemase [Burkholderia pseudomallei Pakistan 9]
          Length = 374

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 172/362 (47%), Gaps = 27/362 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  ++E V
Sbjct: 8   RIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           ++R       + +L GI    +  I D + + V  +V     +  L +   + P  +Q  
Sbjct: 66  RVRELGWTKPVLLLEGIFEAADVEIADRHRLTV--AVHGDEQFKLLTAAKTTRPIDIQLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG            +     +G+++L++ H A AD+        Q+  F    
Sbjct: 124 MNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMM-HFANADEGEI---DWQMSVFDAAT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
               G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +RI
Sbjct: 180 QGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTSRI 238

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    GE V YG      R+  I V A GYADGYP         H+P+   G    +
Sbjct: 239 IGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYP--------RHAPT---GTPIAV 287

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+  + 
Sbjct: 288 DGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCALA 347

Query: 363 TR 364
            R
Sbjct: 348 RR 349


>gi|73490240|dbj|BAE19797.1| alanine racemase [Pseudomonas fluorescens]
          Length = 357

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 181/368 (49%), Gaps = 22/368 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     ++G A+  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLAREVTG-AKALAVIKADAYGHGAVRCAQAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A I +L G     E  +I + +   V+ S+ QL    +       H + L
Sbjct: 63  ALELRAAGIRAPILLLEGFFEADELPLIVEHDFWCVVHSLWQLDAIEQARLAKPIHVW-L 121

Query: 127 QVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++D+G +R+GL   +    +     +  + ++ +++SH A AD+     +  Q+  F   
Sbjct: 122 KLDSGMHRVGLHPNDYKAAYQRLQASANVAKI-VLMSHFARADELDCTRSVEQVAVFLGA 180

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARI 242
            +     E SL +S  +L  P       RPG+ LYG +   +    +  +Q V+T E+++
Sbjct: 181 RADLTA-EISLRNSPAVLGWPRVPSDWVRPGLMLYGSSPFDEPQATASRLQPVMTLESKV 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YG +    +   I V A+GYADGYP          +P+   G   F+
Sbjct: 240 ICVRELPAGEPVGYGARFITPKPMRIGVVAMGYADGYP--------RQAPT---GTPVFV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    +LG+++MDM   D+TD     +G  ++++G +I   +VA A+ T  Y +   + 
Sbjct: 289 DGVRSQLLGRVSMDMLCIDLTDVPQAGLGSTVELWGKNILASEVATAADTIPYQIFCNL- 347

Query: 363 TRYAKFYT 370
            R  + Y+
Sbjct: 348 KRVPRLYS 355


>gi|76818834|ref|YP_337437.1| alanine racemase [Burkholderia pseudomallei 1710b]
 gi|167741914|ref|ZP_02414688.1| alanine racemase [Burkholderia pseudomallei 14]
 gi|167819093|ref|ZP_02450773.1| alanine racemase [Burkholderia pseudomallei 91]
 gi|217419246|ref|ZP_03450753.1| alanine racemase [Burkholderia pseudomallei 576]
 gi|237507771|ref|ZP_04520486.1| alanine racemase [Burkholderia pseudomallei MSHR346]
 gi|254189746|ref|ZP_04896255.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237]
 gi|254264373|ref|ZP_04955238.1| alanine racemase [Burkholderia pseudomallei 1710a]
 gi|254300019|ref|ZP_04967465.1| alanine racemase [Burkholderia pseudomallei 406e]
 gi|76583307|gb|ABA52781.1| alanine racemase [Burkholderia pseudomallei 1710b]
 gi|157810371|gb|EDO87541.1| alanine racemase [Burkholderia pseudomallei 406e]
 gi|157937423|gb|EDO93093.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237]
 gi|217398550|gb|EEC38565.1| alanine racemase [Burkholderia pseudomallei 576]
 gi|234999976|gb|EEP49400.1| alanine racemase [Burkholderia pseudomallei MSHR346]
 gi|254215375|gb|EET04760.1| alanine racemase [Burkholderia pseudomallei 1710a]
          Length = 374

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 172/362 (47%), Gaps = 27/362 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  ++E V
Sbjct: 8   RIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           ++R       + +L GI    +  I D + + V  +V     +  L +   + P  +Q  
Sbjct: 66  RVRELGWTKPVLLLEGIFEAADVEIADRHRLTV--AVHGDEQFKLLTAAKTTRPIDIQLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG            +     +G+++L++ H A AD+        Q+  F    
Sbjct: 124 MNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMM-HFANADEGEI---DWQMSVFDAAT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
               G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +RI
Sbjct: 180 QGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTSRI 238

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    GE V YG      R+  I V A GYADGYP         H+P+   G    +
Sbjct: 239 IGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYP--------RHAPT---GTPIAV 287

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+  + 
Sbjct: 288 DGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCALA 347

Query: 363 TR 364
            R
Sbjct: 348 RR 349


>gi|317968847|ref|ZP_07970237.1| alanine racemase [Synechococcus sp. CB0205]
          Length = 405

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 180/377 (47%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  ++  +L       AVVK + YG G   +A +    G   F V +++E
Sbjct: 30  VEIDEAAIQANAEALRRSLQPGCALMAVVKADGYGHGAVPVARSAAAGGASCFGVATLQE 89

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           GV+LR       + VL  + HP + +      L+P +S + +      L S  G      
Sbjct: 90  GVELRQAGLDQPVLVLGNLSHPDELRACLHWQLMPTLSGMREALLCQNLASGSGRQLAVH 149

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QLERF 182
           L++DTG +RLG   +E           +  QL+ + SHLA AD P + ++++   Q +RF
Sbjct: 150 LKLDTGMSRLGAPWEEGPRLVQAIAGLESLQLAGVYSHLAGADAPGNGLDALTATQQQRF 209

Query: 183 RTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTV 235
            ++++  +  +       LA+S+G L     H+ L R G++LYG   +D +     +Q  
Sbjct: 210 DSVLTGLQQQQLPSGCRHLANSAGTLRSRQLHYDLVRVGLALYGQRPSDHLGSGLDLQPA 269

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   AR+ LIR+  AG  VSYG +    R S +AV  IGYADG P  LS     +   V 
Sbjct: 270 MHVRARVSLIREVPAGVGVSYGHRFITQRPSRLAVVGIGYADGVPRLLS-----NQLEVL 324

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--KLDDVALAS--G 351
            GG+       VP LG ITMD  + D TD   +E G  + + G +   ++D  A +   G
Sbjct: 325 FGGQ------RVPQLGAITMDQLVLDATDVPELEAGSVVTLLGEEAGERIDPTAWSDPIG 378

Query: 352 TTNYDLLVRIGTRYAKF 368
           T  +++L     R  + 
Sbjct: 379 TIPWEILCGFKHRLPRL 395


>gi|53721740|ref|YP_110725.1| alanine racemase [Burkholderia pseudomallei K96243]
 gi|126455974|ref|YP_001074998.1| alanine racemase [Burkholderia pseudomallei 1106a]
 gi|167848949|ref|ZP_02474457.1| alanine racemase [Burkholderia pseudomallei B7210]
 gi|242313527|ref|ZP_04812544.1| alanine racemase [Burkholderia pseudomallei 1106b]
 gi|254192792|ref|ZP_04899227.1| alanine racemase [Burkholderia pseudomallei S13]
 gi|52212154|emb|CAH38171.1| alanine racemase, catabolic [Burkholderia pseudomallei K96243]
 gi|126229742|gb|ABN93155.1| alanine racemase [Burkholderia pseudomallei 1106a]
 gi|169649546|gb|EDS82239.1| alanine racemase [Burkholderia pseudomallei S13]
 gi|242136766|gb|EES23169.1| alanine racemase [Burkholderia pseudomallei 1106b]
          Length = 374

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 172/363 (47%), Gaps = 29/363 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  ++E V
Sbjct: 8   RIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ- 127
           ++R       + +L GI    +  I D + + V +    QL     L +   + P  +Q 
Sbjct: 66  RVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQLKL---LTAAKTTRPIDIQL 122

Query: 128 -VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +++G NRLG            +     +G+++L++ H A AD+        Q+  F   
Sbjct: 123 KMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMM-HFANADEGEI---DWQMSVFDAA 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEAR 241
                G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +R
Sbjct: 179 TQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTSR 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++    GE V YG      R+  I V A GYADGYP         H+P+   G    
Sbjct: 238 IIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYP--------RHAPT---GTPIA 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+  +
Sbjct: 287 VDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCAL 346

Query: 362 GTR 364
             R
Sbjct: 347 ARR 349


>gi|255319496|ref|ZP_05360710.1| alanine racemase [Acinetobacter radioresistens SK82]
 gi|262378480|ref|ZP_06071637.1| alanine racemase [Acinetobacter radioresistens SH164]
 gi|255303436|gb|EET82639.1| alanine racemase [Acinetobacter radioresistens SK82]
 gi|262299765|gb|EEY87677.1| alanine racemase [Acinetobacter radioresistens SH164]
          Length = 356

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 176/361 (48%), Gaps = 25/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+  A+  ++VK NAYG G +    AL +    +F V  +EE ++
Sbjct: 8   IDSQALQYNLNRVKQLAPTAKIVSMVKANAYGHGIKDCLAALNS--TDNFGVACLEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    Q  I ++ GI   +E   +    L  VI    QL +        ++    + V 
Sbjct: 66  IRKLGYQQPITLIEGIFSEEEMDSVIQYGLECVIHQSAQLDWLKARKEEYITKNLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTLI 186
            ++G NRLG  + E ++   NS  K  G   ++  H A AD  + H +N  Q  +F  + 
Sbjct: 126 LNSGMNRLGFKVPEIIEII-NSL-KAEGFSCVLAMHFANAD--ADHPLNEQQKTQFLQVK 181

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
                + AS  +S+ I   P  +F   RPGI LYG +   DK      ++ V+T +A II
Sbjct: 182 EACDPVLASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKSAHELDLKPVMTFDAAII 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            + +   GE V YG     ++D  IA+ +IGY DGYP           P+  +     I 
Sbjct: 242 ALNQIQTGEAVGYGSTFVASQDMQIAIVSIGYGDGYPRAFI------KPNYVM-----IN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
               P++G+++MDM   D++  L++ +G  ++++G    +D+VA A+GT  Y+LL R+  
Sbjct: 291 NKPAPVIGRVSMDMIAVDVS-GLTVTLGTQVELWGKQRLVDEVAEANGTIGYELLCRLSN 349

Query: 364 R 364
           R
Sbjct: 350 R 350


>gi|332094464|gb|EGI99513.1| alanine racemase [Shigella boydii 3594-74]
          Length = 324

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 166/343 (48%), Gaps = 38/343 (11%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           +VK NAYG G E+I  AL   G  D F + ++EE + LR    +  I +L G    Q+  
Sbjct: 1   MVKANAYGHGIERIWSAL---GATDGFALLNLEEAITLRERGWKGPILMLEGFFHAQDLE 57

Query: 94  IFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYA--LQVDTGFNRLGLSLQEALDFTHN-S 149
           I+D + L   + S  QL     L +  +  P    L+V++G NRLG      L       
Sbjct: 58  IYDQHRLTTCVHSNWQL---KALQNARLKAPLDIYLKVNSGMNRLGFQPDRVLTVWQQLR 114

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA--SLASSSGILLGPN 207
               +G+++L+ SH A A+ P     S  + R        +G+E   SL++S+  L  P 
Sbjct: 115 AMANVGEMTLM-SHFAEAEHPDG--ISSAMARIE---QAAEGLECRRSLSNSAATLWHPE 168

Query: 208 YHFQLTRPGISLYGGT------DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
            HF   RPGI LYG +      D  N    ++ V+T  + II ++   AGE V YGG+  
Sbjct: 169 AHFDWVRPGIILYGASPSGQWRDIANTG--LRPVMTLSSEIIGVQTLKAGERVGYGGRYT 226

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
              +  I + A GYADGYP         H+P+   G    + G     +G ++MDM   D
Sbjct: 227 ARDEQRIGIVAAGYADGYP--------RHAPT---GTPVLVDGVRTMTVGTVSMDMLAVD 275

Query: 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +T      +G  ++++G +IK+DDVA A+GT  Y+L+  +  R
Sbjct: 276 LTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALR 318


>gi|261340176|ref|ZP_05968034.1| alanine racemase [Enterobacter cancerogenus ATCC 35316]
 gi|288317692|gb|EFC56630.1| alanine racemase [Enterobacter cancerogenus ATCC 35316]
          Length = 356

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 183/369 (49%), Gaps = 40/369 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEG 68
           ++DL ALK+N   +   +  +R  +VVK NAYG G ++I  AL   G  D F + +++E 
Sbjct: 8   QLDLQALKDNLQIVRRAAPGSRVWSVVKANAYGHGIDRIWGAL---GATDGFALLNLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
           + LR    +  I +L G     +  + D   L   + S  Q+     L    +  P    
Sbjct: 65  ILLRERGWKGPILLLEGFFHADDLPLLDKYRLTTSLHSNWQI---KALQDAKLHAPLDIY 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNS-VQLERFR 183
           L+V++G NRLG   +          N K +G+++L+ +H A A+ P    ++ V++E+  
Sbjct: 122 LKVNSGMNRLGFQPERVHTVWQQLRNLKNVGEMTLM-AHFADAEKPDGIADAMVRVEQ-- 178

Query: 184 TLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTV 235
                 +G++   SL++S+  L  P  HF   RPGI LYG +      D  N    ++ V
Sbjct: 179 ----AAEGLDCPRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWQDIANSG--LKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AG+ V YG + + T +  I + A GYADGYP          +PS  
Sbjct: 233 MTLRSEIIGVQTLKAGDTVGYGSRYRATGEQRIGIVACGYADGYPRI--------APS-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G     +G ++MDM   D+T      +G  ++++G ++K+DDVA A+GT  Y
Sbjct: 283 -GTPVWVDGVRTGTVGTVSMDMMAIDLTPCPQAGIGTPVELWGNEVKIDDVASAAGTVGY 341

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 342 ELMCALAPR 350


>gi|261343600|ref|ZP_05971245.1| alanine racemase [Providencia rustigianii DSM 4541]
 gi|282567981|gb|EFB73516.1| alanine racemase [Providencia rustigianii DSM 4541]
          Length = 354

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 175/367 (47%), Gaps = 31/367 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  I L +L++N   +    G A+  +V+K +AYG G  ++   L N     F V  + 
Sbjct: 5   IRAVIHLQSLEHNLSVIRQNIGAAKIWSVLKADAYGHGIHRVWRGLKN--TDGFAVLDLH 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E + LR    +  I +L G    ++  + D   L   + S  QLT    +    +  P +
Sbjct: 63  EAILLREEGWEGPILLLEGFFQQEDLQVIDQYQLTTSVHSHWQLT---AIEQATLHQPLS 119

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++++G NRLG + +E +       +    +   ++SH A +D PS       +++  
Sbjct: 120 VYIKLNSGMNRLGFTTEEYVSVVSKLQSMANVKNVTLMSHFANSDIPSG------IDQPL 173

Query: 184 TLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
             I  + G+     +A+S  +L   N H+   R GI LYG +     S    + +Q  ++
Sbjct: 174 QKIMQFDGLHLNTCIANSGAVLWHKNTHYDWVRAGIVLYGASPSGKWSDIEKYNLQAAMS 233

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++ II I +  AGE + YG +   T+   IA  A GYADGYP         H+PS   G
Sbjct: 234 LQSEIIAIHEIQAGESIGYGSKFTTTKPMHIATVACGYADGYP--------RHAPS---G 282

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              +  G    +LG ++MDM   DI+D    ++G  ++++G +I +DDVA A+GT  Y+L
Sbjct: 283 TPVWCNGMRCSLLGAVSMDMLTIDISDCPDAKLGSLVELWGQNIPVDDVAEAAGTIGYEL 342

Query: 358 LVRIGTR 364
           L  +  R
Sbjct: 343 LCALARR 349


>gi|126444859|ref|YP_001062046.1| alanine racemase [Burkholderia pseudomallei 668]
 gi|167905905|ref|ZP_02493110.1| alanine racemase [Burkholderia pseudomallei NCTC 13177]
 gi|254183078|ref|ZP_04889670.1| alanine racemase [Burkholderia pseudomallei 1655]
 gi|126224350|gb|ABN87855.1| alanine racemase [Burkholderia pseudomallei 668]
 gi|184213611|gb|EDU10654.1| alanine racemase [Burkholderia pseudomallei 1655]
          Length = 374

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 172/363 (47%), Gaps = 29/363 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  ++E V
Sbjct: 8   RIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ- 127
           ++R       + +L GI    +  I D + + V +    QL     L +   + P  +Q 
Sbjct: 66  RVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQLKL---LTAAKTTRPIDIQL 122

Query: 128 -VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +++G NRLG            +     +G+++L++ H A AD+        Q+  F   
Sbjct: 123 KMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMM-HFANADEGEI---DWQMSVFDAA 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEAR 241
                G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +R
Sbjct: 179 TQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTSR 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++    GE V YG      R+  I V A GYADGYP         H+P+   G    
Sbjct: 238 IIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYP--------RHAPT---GTPIA 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+  +
Sbjct: 287 VDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCAL 346

Query: 362 GTR 364
             R
Sbjct: 347 ARR 349


>gi|304437288|ref|ZP_07397248.1| alanine racemase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369780|gb|EFM23445.1| alanine racemase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 368

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 173/379 (45%), Gaps = 28/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N     +IDL AL +N+  + + +   A+  AVVK +AYG G    A    + G     V
Sbjct: 3   NRAAWAEIDLGALAHNYREIRSRIQKGAKLCAVVKADAYGHGAIAAARVALDEGADYLAV 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
            ++ E +KLR     A + +L  + P   + + D ++   +  +  +   S+  +  G +
Sbjct: 63  ATLSEALKLRAAGFTAPLLILGLVEPESAREVVDGDITQTVCRMDLVEALSQEAVRQGKT 122

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L ++TG  R+G+  ++A +           +L  + SH A AD P       Q++ 
Sbjct: 123 VKVHLTIETGMGRIGVHPKDAAETAKKIAALPNVELEGVFSHFALADIPDKTFTKQQVKL 182

Query: 182 FRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
           F+        IEA+        +A S+ IL  P+ HF + R GI  YG   +D++     
Sbjct: 183 FKDACD---AIEAAGIHIPIKHIAESAAILEIPDVHFDMVRAGIIQYGLWPSDEVTCPID 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +   ARI+ I+    GE V YG +    R++ IA   +GYADGY            
Sbjct: 240 LRPCMKFCARIVYIKTIQPGESVGYGRKFIAERETRIATLPVGYADGYI----------- 288

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALAS 350
              + GG   + G   PI G++ MD  M D+TD    ++GD   +FG D +  D++A  +
Sbjct: 289 -RAYAGGSVEVCGKRAPIAGRVCMDQFMIDVTDIPEAKLGDVCTLFGSDSLTADEIAGWA 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY+++  +  R  + Y
Sbjct: 348 NTINYEVVCLVSERVPRVY 366


>gi|253682108|ref|ZP_04862905.1| alanine racemase [Clostridium botulinum D str. 1873]
 gi|253561820|gb|EES91272.1| alanine racemase [Clostridium botulinum D str. 1873]
          Length = 387

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 178/379 (46%), Gaps = 34/379 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L +N   +  +S + +   +VK +AYG G   +AP L   G     V  + EGV
Sbjct: 11  EINLDNLASNMKEIKKISSSKKIIGIVKADAYGHGALDVAPTLIENGATGLAVAVINEGV 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---- 125
           +LR    +  I VL    P     + DT L   I        Y+K +S      +     
Sbjct: 71  ELRRSGIECPIMVLGFTAP----TLIDTLLRHDIEQTVFSLEYAKQLSEVAEKMHKKIKI 126

Query: 126 -LQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            + VDTG  R+G L  +E++            ++  I +H + AD+ +      QL++F 
Sbjct: 127 HIAVDTGMGRIGFLPNKESVQDVKKISKLPNVEIKGIFTHFSTADESNKEYTYYQLKKFN 186

Query: 184 TLISHYK----GIEAS-LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTV 235
                 K     IE   +A+S+ I+      F+  RPGI LYG   +D+++KS   ++ V
Sbjct: 187 EFYDELKKENVNIETRHIANSAAIMELSETQFEGVRPGIILYGYYPSDEVDKSKLKLKPV 246

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +  I+ I+K  +G+ +SYG + K  R+S+IA   +GYADGY   L           F
Sbjct: 247 MELKTNIVHIKKISSGQYISYGRKFKTERESIIATLPVGYADGYTRLL-----------F 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD----IKLDDVALAS 350
              K  I G   PI+G+I MD  M DITD    +++GD + + G +    I  DD+A   
Sbjct: 296 NKAKVIINGQFAPIIGRICMDQCMVDITDIKGDVKLGDEVILMGQENGIKIDADDIASML 355

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++  I  R  + Y
Sbjct: 356 GTINYEVVCMISKRVPRVY 374


>gi|302038070|ref|YP_003798392.1| alanine racemase [Candidatus Nitrospira defluvii]
 gi|300606134|emb|CBK42467.1| Alanine racemase [Candidatus Nitrospira defluvii]
          Length = 387

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 171/374 (45%), Gaps = 25/374 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + +DL AL +N   +  L+  +   AVVK NAYG G  ++   L    V  F V +V+EG
Sbjct: 12  VSVDLNALGHNLAHVRRLAPRSEVLAVVKANAYGHGALELTRTLQQLAVHRFGVATVDEG 71

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI--SSVPQLTFYSKLMSCGVSHPYAL 126
           + LR       I V+    P Q   +    L PV+  S + Q    +        +   +
Sbjct: 72  IVLRQAGIHDPILVMGPTVPAQFPDLIAHRLTPVLYRSDMVQAFAAAVPPKA-APYSVHV 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++TG  RLG+   E  D       +   +L  +++HLA AD+  +     QL  F+  +
Sbjct: 131 KIETGMGRLGVHPPEMPDLAAMPAFRATLRLEGLMTHLADADNTKTTHTETQLTEFQQTL 190

Query: 187 SHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAE 239
              +  G+   L   A+S+GI+  P   + L RPGI LYG     N++    ++ ++T +
Sbjct: 191 DTLRQGGLSCPLIHAANSAGIIQYPASLYTLVRPGIMLYGYHTLSNETPAPELRPILTWK 250

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A I  +    AG+ VSY       R S IAV  +GYADGY   LS             G 
Sbjct: 251 ATIAHLHNIQAGDSVSYNRTFIAARRSKIAVLPVGYADGYNRLLSNR-----------GM 299

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G  VP++G++ MDMTM D+TD   + +G    + G      +   D+A    T  Y
Sbjct: 300 VLIGGRRVPVVGRVCMDMTMVDVTDVPGVHIGQEAILIGQQGQERLTAADLAAWQQTIPY 359

Query: 356 DLLVRIGTRYAKFY 369
           ++L  IG R  + Y
Sbjct: 360 EVLCAIGQRVPRHY 373


>gi|72382936|ref|YP_292291.1| alanine racemase [Prochlorococcus marinus str. NATL2A]
 gi|72002786|gb|AAZ58588.1| alanine racemase [Prochlorococcus marinus str. NATL2A]
          Length = 402

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 173/381 (45%), Gaps = 31/381 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D   ++NN   + N +  +    AVVK + YG G E +A +    G     V ++EE
Sbjct: 34  VEVDSKIIENNARVLKNFIGDDCSLMAVVKADGYGHGAETVAKSALTGGADSLGVATLEE 93

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           G++LR    + +I +L  +   +E    F  +LIP IS + +    + +     +  +A 
Sbjct: 94  GIQLRNAGLKCQILILGNLINSEELYSSFCWDLIPTISGIREAIICNNIAE-NKNKKFAI 152

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-----DPSSHVNSVQL 179
            L++DTG  RLG +  +  +  +     +   L  I SHLA AD     +       +QL
Sbjct: 153 HLKIDTGMTRLGCNCNQFKELINKIDCLENIALEGIYSHLAIADRYLENNTQLSFTQIQL 212

Query: 180 ERFRTLIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
            RF  ++       K I   LA+S+G L     HF + R G+SLYG    +       + 
Sbjct: 213 NRFEKVLKGLGKRNKFICRHLANSAGTLSDSRLHFDMVRVGLSLYGYFPVNDFKSDLKLS 272

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +  +AR+ L+R    G  V YG   K  R S +AV AIGYADG   +LSG  S     
Sbjct: 273 PALKVKARVTLVRDVGKGIGVGYGHFFKTQRASKLAVVAIGYADGVSRSLSGKISAS--- 329

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I G +VP +G I MD  +FDITD   I+ G  + + G D    I   D    
Sbjct: 330 --------IDGVLVPQVGAIAMDQMVFDITDKPDIKTGQVLTLLGTDGEVCISPQDWCDL 381

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           SG+  +++L     R  +  T
Sbjct: 382 SGSIPWEVLCSFRNRLPRVVT 402


>gi|184158698|ref|YP_001847037.1| alanine racemase [Acinetobacter baumannii ACICU]
 gi|183210292|gb|ACC57690.1| Alanine racemase [Acinetobacter baumannii ACICU]
 gi|322507492|gb|ADX02946.1| Alanine racemase 1, biosynthetic [Acinetobacter baumannii 1656-2]
 gi|323518612|gb|ADX92993.1| alanine racemase [Acinetobacter baumannii TCDC-AB0715]
          Length = 356

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 174/360 (48%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 8   IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAAL-NAS-DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    +  + ++ G+    E  +  +     VI    Q  +  K     ++    + V 
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG    E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKDPEIIEVIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLHIKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   DK      ++ V+T  A II 
Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP         +    F+     I G
Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYP-------RAYVKQNFVA----IDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350


>gi|81301010|ref|YP_401218.1| alanine racemase [Synechococcus elongatus PCC 7942]
 gi|81169891|gb|ABB58231.1| alanine racemase [Synechococcus elongatus PCC 7942]
          Length = 406

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 172/374 (45%), Gaps = 25/374 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  A+  N   +   L+ +    AVVK +AYG G   IA  +  AG     V ++ E
Sbjct: 29  VEVDQGAIAANTRQIRQFLAPSCELMAVVKADAYGHGAVAIASTVLGAGATALGVATIPE 88

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           GV+LR     A I +L  IH P + + I    + P +S+  Q    ++++   G S P  
Sbjct: 89  GVRLREAGITAPILLLGSIHSPDEVQAIAHWQIQPSLSTPKQALICAEVLDRLGQSLPVH 148

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++DTG +RLG   Q A++F          QL+ + SH A AD P       Q   F   
Sbjct: 149 LKLDTGMSRLGAPWQTAVEFLQLVHGLPSLQLASLYSHFATADSPDRAPLQQQHAAFEQA 208

Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           I+  +       +  +A+S+  LL  + H+   R G++LYG      +     +   ++ 
Sbjct: 209 IAQIQAEGLPVPKLHIANSAATLLDSSLHYDQVRVGLALYGLYPAPHLGDRLSLYPALSV 268

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +AR+  +    AG+ VSYG +    R++ IAV  IGYADG P  LS              
Sbjct: 269 KARVTHVTTLPAGQGVSYGHRYVTQRETPIAVVGIGYADGVPRALSN-----------QM 317

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354
           +   +G  +P +G ITMD  M DI+    +  GD + + G      I  DD A  + T +
Sbjct: 318 EVLYRGQRLPQIGAITMDQMMIDISAMPQLAPGDVVTLLGRSGSEQITADDWADRANTIS 377

Query: 355 YDLLVRIGTRYAKF 368
           +++L     R  +F
Sbjct: 378 WEILCGFKDRLPRF 391


>gi|168181951|ref|ZP_02616615.1| alanine racemase [Clostridium botulinum Bf]
 gi|237796857|ref|YP_002864409.1| alanine racemase [Clostridium botulinum Ba4 str. 657]
 gi|182674830|gb|EDT86791.1| alanine racemase [Clostridium botulinum Bf]
 gi|229261016|gb|ACQ52049.1| alanine racemase [Clostridium botulinum Ba4 str. 657]
          Length = 386

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 177/377 (46%), Gaps = 31/377 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV    V  + E +
Sbjct: 11  EIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSRLAVAVLSEAM 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           +LR+   +  I +L         ++ D ++   + S       SK+    V     L+  
Sbjct: 71  ELRMSGVKNPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKI---AVLKRKILKIH 127

Query: 128 --VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
             VDTG  R+G L  +E+++  +        ++  + SH + AD+        Q+ ++  
Sbjct: 128 IVVDTGMGRIGFLPTKESVEDVYKISKLPNIEIEGVFSHFSSADELDKDYTLYQMNKYNE 187

Query: 185 LIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
            I+    K I+     +A+S+ I+   N H    R GI +YG       +  +  ++ V+
Sbjct: 188 FINKLEEKNIQLPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRNNINLKPVM 247

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS            
Sbjct: 248 SLKTSIVHIKKVSSGEYISYGRTFKTKRESIIATLPIGYADGYNRLLSN----------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
            GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D+A   GT
Sbjct: 297 KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAEDIASQIGT 356

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y+++  +  R  + Y
Sbjct: 357 ISYEVICNVNKRVPRVY 373


>gi|163940135|ref|YP_001645019.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
 gi|163862332|gb|ABY43391.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
          Length = 398

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 179/383 (46%), Gaps = 41/383 (10%)

Query: 9   LKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL AL+ N+     A+        VVK NAYG G   IA A+  AG     V  V+E
Sbjct: 11  IEVDLNALQRNFQQYKQAIPFGTAIMTVVKANAYGHGAVPIAKAVIEAGTSHLAVAFVDE 70

Query: 68  GVKLRLYTPQARIFV---LYGIHPGQ---EKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           G++LR    +A I V   ++G  P +   + I +D ++   + ++  L    ++ S    
Sbjct: 71  GIELR----EAGITVPILIFGYTPYEAIVDAITYDLSM--TVYTIEDLHAIEEVASQMEK 124

Query: 122 HPYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + Y  +++DTG +R+GL L E   F       K  Q+  + +H ACAD+       +Q E
Sbjct: 125 NAYIHIKIDTGMSRIGLQLNEVTLFLQTLKCTKYIQVEGMYTHFACADERDKAYTLMQQE 184

Query: 181 RFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPM 232
            F+  +S  + ++  +      +S+  +        + R GI+LYG     D   ++  +
Sbjct: 185 VFQKAVSKAEELQIVIPWIHANNSAATIDMRETKGNMVRLGIALYGLYPSADVNQEAISL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q ++T ++++  I+K   G  VSYG     T +  IA   +GYADG    LS        
Sbjct: 245 QPILTFKSKVAHIKKVKKGNGVSYGATYTATGEEWIATIPVGYADGVSRQLS-------- 296

Query: 293 SVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDV 346
                 KGF  IK   VPI+G+I MD  M D+T  + I VGD +  +G      I +D V
Sbjct: 297 -----NKGFVLIKDVKVPIIGRICMDQLMLDVTKIMPIHVGDEVVFYGNQGEESISVDCV 351

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T NY++   +  R  + Y
Sbjct: 352 ADTLSTINYEITCMLSRRIPRIY 374


>gi|332873690|ref|ZP_08441633.1| alanine racemase [Acinetobacter baumannii 6014059]
 gi|332738078|gb|EGJ68962.1| alanine racemase [Acinetobacter baumannii 6014059]
          Length = 358

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 174/360 (48%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 10  IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAAL-NAS-DAFGVACLQEGLE 67

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    +  + ++ G+    E  +  +     VI    Q  +  K     ++    + V 
Sbjct: 68  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 127

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG    E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 128 LNSGMNRLGFKDPEIIEVIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLHIKE 184

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   DK      ++ V+T  A II 
Sbjct: 185 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 244

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP         +    F+     I G
Sbjct: 245 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYP-------RAYVKQNFVA----IDG 293

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 294 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 352


>gi|332798489|ref|YP_004459988.1| alanine racemase [Tepidanaerobacter sp. Re1]
 gi|332696224|gb|AEE90681.1| Alanine racemase [Tepidanaerobacter sp. Re1]
          Length = 393

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 180/383 (46%), Gaps = 41/383 (10%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  L++N   +  + S NA+  A+VK + YG G  ++A    + G     V  ++E 
Sbjct: 14  EINLDDLRHNLLEIRRITSTNAKLCAIVKADGYGHGAVEVAQTALSCGAHYLGVAFLDEA 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
           V+LR    +A I +L      Q   I + ++   + S+      S+            ++
Sbjct: 74  VELREKGIKAPILILGFTPENQFDTIIEHDITQTVYSLKSAILLSEKALKRKKKAKVHIK 133

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-----IISHLACADDPSSHVNSVQLERF 182
           +DTG +R+G       D +  S  +KL QL       I++H A AD+      +V  E+F
Sbjct: 134 LDTGMSRIGFQT----DASSISDIRKLFQLEGLKVEGILTHFAKADEKD---RTVTEEQF 186

Query: 183 RTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-P 231
           R        IEA         +A+S+GI+  PN H  + RPGI LYG   +D+I KS   
Sbjct: 187 RIFTEAVNTIEAKDYKIPIKHIANSAGIIEYPNTHLDMVRPGIILYGMYPSDEITKSKIH 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ +++ + R+  ++    G+ +SYGG     R ++IA   +GYADGY   LS       
Sbjct: 247 LKPILSLKTRVAHVKSLPKGKAISYGGTYITERHTIIATLPVGYADGYSRLLSSR----- 301

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD----IKLDDV 346
                  +  I G   P++G+I MD  M D+TD    ++  D + + G D    I+ +D+
Sbjct: 302 ------AQVLINGQRAPVVGRICMDQCMVDVTDIQGEVKPKDEVTLIGADGSERIEAEDI 355

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A   GT NY++   I  R  + Y
Sbjct: 356 AKIIGTINYEITCGISKRVPRVY 378


>gi|134279387|ref|ZP_01766100.1| alanine racemase [Burkholderia pseudomallei 305]
 gi|134249806|gb|EBA49887.1| alanine racemase [Burkholderia pseudomallei 305]
          Length = 374

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 172/362 (47%), Gaps = 27/362 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  ++E V
Sbjct: 8   RIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           ++R       + +L GI    +  I D + + V  +V     +  L +   + P  +Q  
Sbjct: 66  RVRELGWTKPVLLLEGIFEAADVEIADRHRLTV--AVHGDEQFKLLTAAKTTRPIDIQLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG            +     +G+++L++ H A AD+        Q+  F    
Sbjct: 124 MNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMM-HFANADEGEI---DWQMSVFDAAT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
               G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +RI
Sbjct: 180 QGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTSRI 238

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    GE V YG      R+  I + A GYADGYP         H+P+   G    +
Sbjct: 239 IGVQTLTPGETVGYGRCFAAEREMRIGIVACGYADGYP--------RHAPT---GTPIAV 287

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+  + 
Sbjct: 288 DGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCALA 347

Query: 363 TR 364
            R
Sbjct: 348 RR 349


>gi|20141177|sp|P54918|ALR_SYNY3 RecName: Full=Alanine racemase
          Length = 372

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 172/376 (45%), Gaps = 29/376 (7%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  AL +N        G      AVVK +AYG G  ++A     AG     + ++ E
Sbjct: 8   VEIDQAALVHNVRQFRQYVGPKTNLMAVVKADAYGHGAVRVAQTALQAGADWLAIATLGE 67

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125
           G++LR     A I +L GI+ P + + I    L P + S  Q   ++  L+  G   P  
Sbjct: 68  GIELREAGITAPILLLGGINSPEEIEAIAHWRLQPTLCSPEQAQLFNDILLKLGKVLPVH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           L++DTG  RLG    +A +F      + L QL L  + SHLA ADDP++     Q ERF 
Sbjct: 128 LKLDTGMTRLGTPWPQAANFV--GLVQSLPQLRLASLYSHLATADDPNTATMLQQQERFA 185

Query: 184 TLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVV 236
             I+  +       +  LA+S+  L G  +H+ + R G+ LYG      +     ++ V+
Sbjct: 186 KAIASLRQARLPIPKLHLANSAATLHGQAWHYDMVRVGLGLYGLYPAPHLGDCLDLKPVL 245

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  A+I  IR    G  VSYG Q        +AV  IGYADG P  LS     +   V L
Sbjct: 246 TVRAKITQIRTIPPGTGVSYGHQFVSEETMPMAVVGIGYADGVPRNLS-----NQLEVLL 300

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                 +G  V  +G ITMD  M D+      +VG+ + + G D    I  D  A   GT
Sbjct: 301 ------RGQPVRQIGAITMDQMMVDLRGIDDPQVGEVVTLIGQDGDRQITADHWASTLGT 354

Query: 353 TNYDLLVRIGTRYAKF 368
            ++++L     R  + 
Sbjct: 355 ISWEILCGFKHRLPRI 370


>gi|227431178|ref|ZP_03913233.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353073|gb|EEJ43244.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 373

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 175/375 (46%), Gaps = 29/375 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A++ N   +   +G  R  AVVK NAYG G +++  AL+  GV DF V ++ EG
Sbjct: 14  LDIDLKAIQTNAKLIMRHAGAQRLIAVVKANAYGHGAKQVVGALFEVGVYDFAVATIGEG 73

Query: 69  VKLRLYTPQARIFV-LYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           V LR Y PQA I + L G+    Q +++ +  L P + +   L      +  G      L
Sbjct: 74  VDLRKYYPQAEINIFLLGVQDVTQTEVMVENRLSPAVGTTEWLDEAVNYIKDGQKLDIQL 133

Query: 127 QVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            VDTG  R+G     A+ D  H     +  QL+ + +H A ADD + +    Q++RF   
Sbjct: 134 AVDTGMGRMGAHSASAVEDMYHLIQGTEKFQLAGVFTHFATADDNNQNYYDEQVQRFYQW 193

Query: 186 ISHYKGIEAS---LASS-SGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
           +    GI      LA+S S I      +    R G  LYG   G  +     P++  +  
Sbjct: 194 VQS-AGIPKQYLHLANSGSAIWHHDEIYTDTIRVGSVLYGYNPGAPEKKMPLPLKPALQL 252

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++++  + +   GE VSYG      +   IA   IGYADGY   +SG+            
Sbjct: 253 KSKLGSVHQLTTGESVSYGATYTAEKPQWIATLPIGYADGYLRRMSGM------------ 300

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           K  + G++  ++G++TMD  +  IT      VG  + + G +    I +++VA  + T  
Sbjct: 301 KVLVDGHIEHVIGRVTMDQIV--ITLKQKYPVGKTVTLVGLEGENQISVEEVAEYAQTIP 358

Query: 355 YDLLVRIGTRYAKFY 369
           +++L   G R  + Y
Sbjct: 359 HEILTNFGARLPRIY 373


>gi|197285367|ref|YP_002151239.1| alanine racemase, catabolic [Proteus mirabilis HI4320]
 gi|194682854|emb|CAR43168.1| alanine racemase, catabolic [Proteus mirabilis HI4320]
          Length = 370

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 178/371 (47%), Gaps = 37/371 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ I+L AL +N   + + +  ++  +VVK +AYG G   + PAL +     F +  +++
Sbjct: 6   KISINLDALSHNLSVIKSKAQGSKVWSVVKADAYGHGLSCVWPALSH--TDGFALIELDK 63

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            + LR       I +L G   P    ++   +L  V+ +  Q   +  +    +  P   
Sbjct: 64  AIMLREQGWVGPILLLEGFFKPDDVYLLERYSLTTVVHADWQ---FEAIEQAQLERPINI 120

Query: 126 -LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L++++G NRLG      Q+A+       N  +G + + +SH A AD        + +  
Sbjct: 121 YLKLNSGMNRLGYRPEDYQQAIQRAKGITN--IGSI-VQMSHFANAD------TGLNMAT 171

Query: 182 FRTLI--SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            + +I  S    +   LA+S+ IL  P  H    RPGI LYG    G  +      +Q V
Sbjct: 172 QKQIIDSSMVNDLPRCLANSAAILFEPQTHHSWVRPGIILYGVSPSGVWQDIADFDLQPV 231

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + ++ I+    GE + YG +    RD  IAV A GYADGYP         H+P   
Sbjct: 232 MTFNSEVLAIQSVKKGEQIGYGSRYTAQRDMRIAVVACGYADGYP--------RHAPD-- 281

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    +KG+   ++G+I+MDM   D+TD   +E G  ++++G  + +D+VALA GT  Y
Sbjct: 282 -GTPVIVKGHKTQLVGRISMDMLTIDVTDLPDVEHGSPVELWGNQLPVDEVALACGTIGY 340

Query: 356 DLLVRIGTRYA 366
           +LL  I  R A
Sbjct: 341 ELLCAIAPRVA 351


>gi|107026636|ref|YP_624147.1| alanine racemase [Burkholderia cenocepacia AU 1054]
 gi|116692174|ref|YP_837707.1| alanine racemase [Burkholderia cenocepacia HI2424]
 gi|105896010|gb|ABF79174.1| alanine racemase [Burkholderia cenocepacia AU 1054]
 gi|116650174|gb|ABK10814.1| alanine racemase [Burkholderia cenocepacia HI2424]
          Length = 373

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 176/360 (48%), Gaps = 33/360 (9%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R  AV+K NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L G+  P   ++     L   +    QL     L++     P  +Q  +++G
Sbjct: 71  GWDKPVLLLEGVFEPADVELADHHRLTVAVHCDEQLDL---LIAAKPRQPIDIQLKMNSG 127

Query: 132 FNRLG---LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
            NRLG    + + A +   ++    +G+++L++ H A AD+    V+  QL++F    + 
Sbjct: 128 MNRLGYRPAAFRAAWERAASA--PSIGKITLMM-HFANADE--GEVDW-QLDQFDATTAG 181

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIIL 244
             G E S+++S+ +L  P  H    RPG  LYG +      H    P+   +T  ++II 
Sbjct: 182 IPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLSSKIIG 240

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++     E V YG +    R   I V A GYADGYP         H+P+   G    + G
Sbjct: 241 VQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYP--------RHAPT---GTPIAVDG 289

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 290 VMTRVVGRVSMDMLTVDLTPCPNAGIGSRVELWGDQVKVDDVAEASGTIGYELMCALARR 349


>gi|254253815|ref|ZP_04947132.1| Alanine racemase [Burkholderia dolosa AUO158]
 gi|124898460|gb|EAY70303.1| Alanine racemase [Burkholderia dolosa AUO158]
          Length = 465

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 167/358 (46%), Gaps = 29/358 (8%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A++ N   +   +  +R  AVVK NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 105 AVRRNLAFIRRTAAQSRVWAVVKANAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 162

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L GI  P   + +    L   +    QL     L++     P  +Q  +++G
Sbjct: 163 GWDKPVLLLEGIFEPADVEWVDRHRLTVAVHCDEQLDL---LIAAKPRQPIDIQLKMNSG 219

Query: 132 FNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
            NRLG            +     +G ++L++ H A AD+        QLERF    +   
Sbjct: 220 MNRLGYRPDAFRAAWERAAAAPSIGTITLMM-HFANADEGEI---DWQLERFDAATAGIP 275

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIR 246
           G E ++A+S+G+L  P  H    RPG  LYG +      H    P+   +T  +RII ++
Sbjct: 276 G-ERTVANSAGVLWHPRAHRDWVRPGTILYGASPTGVARHIADTPLLPAMTLTSRIIGVQ 334

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G+ V YG +    R   I V A GYADGYP         H+P+   G    + G  
Sbjct: 335 TLEPGDTVGYGRRFTADRPMRIGVVACGYADGYP--------RHAPT---GTPIAVDGVT 383

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             ++G+++MDM   D+T      +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 384 TRVVGRVSMDMLTVDLTPCPHAGIGSSVELWGDRVKVDDVAEASGTIGYELMCALARR 441


>gi|282895986|ref|ZP_06304017.1| Alanine racemase region protein [Raphidiopsis brookii D9]
 gi|281199096|gb|EFA73966.1| Alanine racemase region protein [Raphidiopsis brookii D9]
          Length = 385

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 180/369 (48%), Gaps = 33/369 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL NN   +   LS   +  AVVK +AYG G   +A  +  AG     V +V E
Sbjct: 17  VEIDLGALSNNVKQLVGFLSPGTQLMAVVKADAYGHGAITVATTVLAAGATWLGVATVTE 76

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G++LR    +A I +L   + P Q   I    L P + S  Q   +S+ ++  + H Y L
Sbjct: 77  GIQLREAGIKAPILILGATYTPEQIHAITSWQLEPTLCSPGQALIFSQFLNS-IDHNYKL 135

Query: 127 QV----DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
            V    DTG +RLG   Q+A  F    F ++L +L +  + SH A AD P + +   Q  
Sbjct: 136 PVHIKLDTGMSRLGAEWQQAGQFAQ--FVQELPRLHIASVYSHFATADSPDTTIMEQQHG 193

Query: 181 RFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ-- 233
           RF+  I+  +  GI+     LA+S+  L     H+ + R G+++YG     ++ + +Q  
Sbjct: 194 RFQQAIAQIRARGIKIPSLHLANSAATLGDKELHYDMVRAGLAIYGLYPAAHQRNYLQLR 253

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +  +ARI  I+    G  VSYG +    R+  I V  IGYADG P    GL ++    
Sbjct: 254 PALQVKARITHIKTISKGTGVSYGHKFIAPREMRIGVVGIGYADGVP---RGLSNQM--- 307

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  ++G+ V  +G ITMD  M DI+  + ++ G+ + + G      I  DD A  
Sbjct: 308 -----EVLVQGHRVQQIGMITMDQLMIDISPLVEVQEGEIVTLLGEQGEEKITADDWANQ 362

Query: 350 SGTTNYDLL 358
             T +++++
Sbjct: 363 LNTISWEII 371


>gi|227505268|ref|ZP_03935317.1| alanine racemase [Corynebacterium striatum ATCC 6940]
 gi|227198167|gb|EEI78215.1| alanine racemase [Corynebacterium striatum ATCC 6940]
          Length = 363

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 178/380 (46%), Gaps = 39/380 (10%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            LR +IDL A+ +N   +      A+   VVK +AYG G +++AP +  AG   F V ++
Sbjct: 1   MLRTRIDLDAIAHNVSLLKEKVAPAQLMCVVKADAYGHGVKEVAPVMAAAGADAFGVATL 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-------LIPVISSVPQLTFYSKLMSC 118
           +E V+LR            GI       I+D+           +   VP LT    L+  
Sbjct: 61  DEAVELRRS----------GIDQPIAAWIWDSTDEVAEALACRIHIGVPSLTHARCLVET 110

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNS 176
            V+    ++V+TG +R G+  +   D     F +   Q+ ++  +SH ACAD+P +  N 
Sbjct: 111 EVAAKVYIKVETGLHRSGVD-ESDWDEVFALF-RDAPQIEVLGLMSHFACADEPDNPFND 168

Query: 177 VQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q   FR  I   +  G+E     LA+S  +L  P+ +F+L RPG++ YG      + H 
Sbjct: 169 EQEATFRRAIERARAAGLECPINHLANSPAVLDRPSAYFELVRPGLACYGLEPIPGRDHG 228

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T  A I+ ++   AGE  SYG      +   +A    GYADG P    G      
Sbjct: 229 LKPAMTWAASIVNVKPIEAGEATSYGQTWHAEKRGFLATVPCGYADGLPRDFQG-----K 283

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFG-PDIKLDDVALA 349
             V +GGK      + P +G++ MD  + D+ D+   ++ GD   IFG   +    +A A
Sbjct: 284 LHVGIGGK------LYPQVGRVCMDQIVVDLGDNEYGVQQGDEAIIFGVGGMSATALADA 337

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +GT NY+++ R   R  + Y
Sbjct: 338 AGTINYEVICRPTGRSVRKY 357


>gi|218780053|ref|YP_002431371.1| alanine racemase [Desulfatibacillum alkenivorans AK-01]
 gi|218761437|gb|ACL03903.1| alanine racemase [Desulfatibacillum alkenivorans AK-01]
          Length = 363

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 177/369 (47%), Gaps = 21/369 (5%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL +N+  +  L+G   +  +VVK +AYG G ++ A  L + G     V    +
Sbjct: 6   LEIDLKALAHNYRVLADLAGPGTKMVSVVKADAYGHGLKQAARTLVDCGTYALGVFDPAD 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
              +R       I  L GI P + +     N+  VI S+      S+  +  G +    +
Sbjct: 66  AAVIRQEGIHVPIVSLSGIFPWEAEDAAKNNIDAVIFSMEAAQALSQAFLEKGETGNVII 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG  RLG+  ++   F       K  +++ I SHLA ++ P       Q+E FR+  
Sbjct: 126 KVDTGMGRLGIFPEDLPAFVEALAPLKGIRVTGIASHLAASEIPDHPHTKSQVEAFRS-- 183

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIIL 244
           +    I  +LA+S  +L G      L RPGI+LYG     ++  +  ++ V+T + RII 
Sbjct: 184 ASLSMINDTLANSGAVLEGLAKGVPLARPGIALYGSAPDPEMKGADLLKPVMTFKTRIIS 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++    G  +SYG     +R SLIA   +GYADGY   L+             G   + G
Sbjct: 244 LKTLPKGSPISYGMTFTTSRPSLIAAVPVGYADGYFRRLAN-----------KGVAIVHG 292

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVR 360
             VP++G + M++TM D+T    ++ GD + + G      +  D++A ++GT +Y++   
Sbjct: 293 KRVPVVGTVCMNLTMLDVTGLDEVQPGDEVVLLGEKDGQRVTGDELAASAGTISYEIYCS 352

Query: 361 IGTRYAKFY 369
           +G    + Y
Sbjct: 353 LGHANPRQY 361


>gi|161407967|ref|YP_001015793.2| alanine racemase [Prochlorococcus marinus str. NATL1A]
          Length = 402

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 174/380 (45%), Gaps = 29/380 (7%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D   ++NN   + N +  +    AVVK + YG G E +A +    G     V ++EE
Sbjct: 34  VEVDSKIIENNARVLKNFIGDDCSLMAVVKADGYGHGAETVAKSALTGGADSLGVATLEE 93

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           G++LR    + +I +L  +   +E    F  +LIP IS + +    + +        +  
Sbjct: 94  GIQLRNAGLKCQILILGNLINSEELYSSFCWDLIPTISGIREAIICNNIAENKHKKFFIH 153

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVN--SVQLE 180
           L+VDTG  RLG    E  D        +   L  I SHLA AD   + ++ +N   +Q+ 
Sbjct: 154 LKVDTGMTRLGCDCDEVKDLISKIDYLENISLKGIYSHLAIADKDLEKNTKLNFTQIQVT 213

Query: 181 RFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQT 234
           RF  ++    +  K +   LA+S+G L     HF + R G+SLYG    +       ++ 
Sbjct: 214 RFEKVLKDLGARNKSLCRHLANSAGTLSDSRLHFDMVRVGLSLYGYFPVNDFESDLRLKP 273

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  ++R+ L+R+   G  V YG   K  R S +AV AIGYADG    LSG  S      
Sbjct: 274 ALKVKSRVTLVREVEKGIGVGYGHFFKTQRKSKLAVVAIGYADGVSRNLSGKISAS---- 329

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  I G +VP +G I MD  +FDITD   I  G  + + G D    I   +    S
Sbjct: 330 -------IDGVLVPQVGAIAMDQMVFDITDKPDIRTGQVLTLLGTDGAVCISPQNWCDLS 382

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           G+  +++L     R  +  T
Sbjct: 383 GSIPWEVLCGFRNRLPRVVT 402


>gi|134300698|ref|YP_001114194.1| alanine racemase [Desulfotomaculum reducens MI-1]
 gi|226711040|sp|A4J8G6|ALR_DESRM RecName: Full=Alanine racemase
 gi|134053398|gb|ABO51369.1| alanine racemase [Desulfotomaculum reducens MI-1]
          Length = 370

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 182/382 (47%), Gaps = 31/382 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            E +  +I+L A+++N   +  + G N    AVVK N YG G   +A     AG     V
Sbjct: 2   KEPIWAEINLEAIRHNIKEIRKMVGPNREIMAVVKANGYGHGAVPVARVALEAGATRLAV 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---- 118
             + E  +LR    +  I +L  I P Q   I D     V  +V +     K+ +     
Sbjct: 62  ARLSEAQELRRAGLKVPILLLGYISPDQ---IGDALEYNVTLTVFRFDLAKKIAAIAQGR 118

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNS 176
           G      L+VDTG  R+G +  E       +    L  L +  I +H A AD+       
Sbjct: 119 GQRATVHLKVDTGMGRIGFTPDEE-GLAEITAVCALNGLDVEGIYTHFATADEQDKSYTR 177

Query: 177 VQLERFRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            Q +RF  +++    +GI  SL   A+S+ I+  P  +  L RPGI LYG   +++++K 
Sbjct: 178 WQFKRFMLVLNRLEEQGITFSLRHCANSAAIMEFPETYLDLVRPGIILYGLYPSEEVDKG 237

Query: 230 HPM-QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             + Q  +T +ARI  ++K  +G  +SYG    + +++ IA   +GYADGYP  LS    
Sbjct: 238 KLLLQPAMTLKARITHVKKVNSGTKISYGCTYTVPQETDIASLPLGYADGYPRLLSS--- 294

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVA 347
                    G+  +KG    ++G++ MD  M D+     ++V D + IF G ++ +++VA
Sbjct: 295 --------KGQVLVKGKRARVVGRVCMDQCMVDVGHIAEVKVHDEVIIFGGAELPVEEVA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY+++  +G+R  + Y
Sbjct: 347 TWLGTINYEVVCWVGSRVPRVY 368


>gi|56751905|ref|YP_172606.1| alanine racemase [Synechococcus elongatus PCC 6301]
 gi|56686864|dbj|BAD80086.1| alanine racemase [Synechococcus elongatus PCC 6301]
          Length = 406

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 170/374 (45%), Gaps = 25/374 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  A+  N   +   L+ +    AVVK +AYG G   IA  +  AG     V ++ E
Sbjct: 29  VEVDQGAIAANTRQIRQFLAPSCELMAVVKADAYGHGAVAIASTVLGAGATALGVATIPE 88

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           GV+LR     A I +L  IH P + + I    + P +S+  Q L     L   G S P  
Sbjct: 89  GVRLREAGITAPILLLGSIHSPDEVQAIAHWQIQPSLSTPKQALICAEALDRLGQSLPVH 148

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++DTG +RLG   Q A++F          QL+ + SH A AD P       Q   F   
Sbjct: 149 LKLDTGMSRLGAPWQTAVEFLQLVHGLPSLQLASLYSHFATADSPDRAPLQQQHAAFEQA 208

Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           I+  +       +  +A+S+  LL  + H+   R G++LYG      +     +   ++ 
Sbjct: 209 IAQIQAEGLPVPKLHIANSAATLLDSSLHYDQVRVGLALYGLYPAPHLGDRLSLYPALSV 268

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +AR+  +    AG+ VSYG +    R++ IAV  IGYADG P  LS              
Sbjct: 269 KARVTHVTTLPAGQGVSYGHRYVTQRETPIAVVGIGYADGVPRALSN-----------QM 317

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354
           +   +G  +P +G ITMD  M DI+    +  GD + + G      I  DD A  + T +
Sbjct: 318 EVLYRGQRLPQIGAITMDQMMIDISAMPQLAPGDVVTLLGRSGSEQITADDWADRANTIS 377

Query: 355 YDLLVRIGTRYAKF 368
           +++L     R  +F
Sbjct: 378 WEILCGFKDRLPRF 391


>gi|258592918|emb|CBE69227.1| Alanine racemase [NC10 bacterium 'Dutch sediment']
          Length = 392

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 34/377 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL A+++N  ++  L   + +  +VVK + YG G   +A    +AG     V +V+E
Sbjct: 22  VEVDLEAIRHNIAAIRRLLKPSTQLMSVVKADGYGHGAVAVARTALSAGASWLAVATVDE 81

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           G+ LR+    A I  L+G     E+I  + +  L P + S+ Q   +S+     V  P  
Sbjct: 82  GISLRMAGIDAPIL-LFGPVICTEEIEAVAEHRLQPTVCSLDQARRFSEAGLGPV--PIH 138

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFR 183
           L+VDTG +RLG+S QEA D    S  + L  +S++   SHLA AD         Q ERF 
Sbjct: 139 LKVDTGMSRLGISWQEAQDLL--SAIRVLPDVSVVSLYSHLATADAVDPTTTREQFERFS 196

Query: 184 TLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVV 236
            L+     +GI   L   A+S+  L  P+ HF L R G++ YG   +  +     ++  +
Sbjct: 197 QLVETLEQQGIRPPLVHLANSAATLTFPDTHFDLVRIGLAQYGLYPSSHLQAVVALRPAL 256

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVF 295
             +A+II ++    G  VSYG   +  R + +A  +IGY DG    LS  +D       F
Sbjct: 257 ALKAKIIFVKTVPPGTGVSYGHTFRTARRTRLATVSIGYGDGISRALSNRID-------F 309

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
           L     ++G  V  +G ITMD  + D+TD+  +  GD   + G D    I + + A   G
Sbjct: 310 L-----VRGRRVRQVGTITMDQCLIDVTDAPEVSDGDIATLLGHDGEEGISIAEWAERLG 364

Query: 352 TTNYDLLVRIGTRYAKF 368
           T  Y++L  +  R  + 
Sbjct: 365 TIPYEILTALSPRLPRI 381


>gi|88807916|ref|ZP_01123427.1| alanine racemase [Synechococcus sp. WH 7805]
 gi|88787955|gb|EAR19111.1| alanine racemase [Synechococcus sp. WH 7805]
          Length = 393

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 172/347 (49%), Gaps = 30/347 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++   A++ N  ++   L       AVVK + YG G E +A A    G     V +++E
Sbjct: 28  MEVSAQAVEKNARALKGILKPGCALMAVVKADGYGHGAETVARAAICGGAASLGVATLQE 87

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR    +  + VL  +   ++ +      L+P +SS+ +      L S  G      
Sbjct: 88  GIELRRAGLELPVLVLGNLIQAEDLRACLHWQLMPTLSSMREALLCQNLASGSGRRFSVQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADD----PSSHVNSVQL 179
           L++DTG  RLG   Q+    T  +  ++L  L L  + SHLA AD      +  +  +Q 
Sbjct: 148 LKLDTGMTRLGCDWQDGSRLT--AAIQQLDHLMLRGVYSHLAMADGGPEGDAERITRLQQ 205

Query: 180 ERF----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQ 233
           ERF    R+L S  + ++  LA+S+G L  P+ H    R G++LYG +    +N+S  ++
Sbjct: 206 ERFDAVTRSLRS--EALQLHLANSAGTLRDPSLHHDQVRVGLALYGHSPSQHLNQSVHLE 263

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +  +AR+ LIR   AG  VSYG +   +R S +AV  IGYADG   +LSG       S
Sbjct: 264 PAMGVKARVSLIRVVPAGVGVSYGHRFITSRPSRLAVVGIGYADGVSRSLSG-----QIS 318

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
           V   G+       +P +G ITMD  + D TD  +++VGD + + G D
Sbjct: 319 VLHAGQ------RLPQVGAITMDQLLVDATDHPALDVGDVVTLLGSD 359


>gi|300782672|ref|YP_003762963.1| alanine racemase [Amycolatopsis mediterranei U32]
 gi|299792186|gb|ADJ42561.1| alanine racemase [Amycolatopsis mediterranei U32]
          Length = 371

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 165/341 (48%), Gaps = 29/341 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+ IDL A+++N   + A +  +   AVVK +AYG G   +A A   AG       S+ E
Sbjct: 9   RVDIDLDAIRHNLTLLGARAPGSEVMAVVKADAYGHGALPVARAAVEAGATWLGTCSLGE 68

Query: 68  GVKLRLYTPQARIFVL-----YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            + LR     AR+F           PG E    D +L    SS+ +L   S     G   
Sbjct: 69  ALALREAGITARLFSWLDTPDVDFAPGVEN---DIDL--AASSLGELRRISAAAKPGTPA 123

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++DTG +R G       +    +  +   ++  I SHLACAD+P      +Q +RF
Sbjct: 124 RVHLKIDTGLSRNGCPPAAWAELVEAAAAEPRVEVVAIWSHLACADEPEHPSIDLQAKRF 183

Query: 183 RTL--ISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +   G++    LA+S+ +L  P+ HF + RPGI++YG  + + +   ++  +T 
Sbjct: 184 AEAYDTARAAGLDPMRHLANSAALLTRPDLHFDIVRPGIAMYG-LNPVPQPEDLRPAMTF 242

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVFLG 297
            + + L+++  AGE VSYG     +R++ +A+   GYADG P +LSG +D      V LG
Sbjct: 243 RSAVALVKRIEAGESVSYGHTWTASRETNLALVPAGYADGVPRSLSGRMD------VLLG 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           G+        P+ G++ MD  + D  D     VGD + +FG
Sbjct: 297 GQ------RRPVAGRVCMDQLVVDCGD-YEPSVGDEVVLFG 330


>gi|149192465|ref|ZP_01870656.1| alanine racemase [Vibrio shilonii AK1]
 gi|148833698|gb|EDL50744.1| alanine racemase [Vibrio shilonii AK1]
          Length = 347

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 162/341 (47%), Gaps = 30/341 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEEGV 69
           I+L AL +N   +   + N++  AVVK N YG G   IA    NA G   F V  +EE +
Sbjct: 11  INLDALAHNLACIKQKAPNSKVMAVVKANGYGHGLRHIAK---NATGADAFGVARIEEAL 67

Query: 70  KLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
           +LR       I +L G + P    ++   N+  V+    QL     L    +  P    L
Sbjct: 68  QLRASGVVKPILLLEGFYSPNDLPVLVTNNIQTVVHCYEQL---DALEQAELETPVVVWL 124

Query: 127 QVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +VD+G +RLG+     QE ++  H   N  + +    +SH  CAD+  + +   Q+E F 
Sbjct: 125 KVDSGMHRLGVREEQYQEFVERLHRCDN--VAKPLRYMSHFGCADELDNTMTQQQIELFL 182

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEA 240
           +L     G E S+A+S+G+L          RPGI +YG +   DK       + V+T ++
Sbjct: 183 SLTEGCNG-ERSMAASAGLLEWQQSRLDWVRPGIIMYGVSPFGDKTAADMGFKPVMTLKS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    GE V YG      RD+ + V AIGY DGYP T        +P+   G   
Sbjct: 242 HLIAVRDVKKGESVGYGATWTSQRDTKVGVIAIGYGDGYPRT--------APN---GTPV 290

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341
            + G  VPI G+++MDM   D+      +VGD   ++G ++
Sbjct: 291 LVNGRKVPIAGRVSMDMLTVDLGPDALDQVGDEAILWGEEL 331


>gi|16331712|ref|NP_442440.1| alanine racemase [Synechocystis sp. PCC 6803]
 gi|1001266|dbj|BAA10510.1| alanine racemase [Synechocystis sp. PCC 6803]
          Length = 400

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 172/376 (45%), Gaps = 29/376 (7%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  AL +N        G      AVVK +AYG G  ++A     AG     + ++ E
Sbjct: 36  VEIDQAALVHNVRQFRQYVGPKTNLMAVVKADAYGHGAVRVAQTALQAGADWLAIATLGE 95

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125
           G++LR     A I +L GI+ P + + I    L P + S  Q   ++  L+  G   P  
Sbjct: 96  GIELREAGITAPILLLGGINSPEEIEAIAHWRLQPTLCSPEQAQLFNDILLKLGKVLPVH 155

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           L++DTG  RLG    +A +F      + L QL L  + SHLA ADDP++     Q ERF 
Sbjct: 156 LKLDTGMTRLGTPWPQAANFV--GLVQSLPQLRLASLYSHLATADDPNTATMLQQQERFA 213

Query: 184 TLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVV 236
             I+  +       +  LA+S+  L G  +H+ + R G+ LYG      +     ++ V+
Sbjct: 214 KAIASLRQARLPIPKLHLANSAATLHGQAWHYDMVRVGLGLYGLYPAPHLGDCLDLKPVL 273

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  A+I  IR    G  VSYG Q        +AV  IGYADG P  LS     +   V L
Sbjct: 274 TVRAKITQIRTIPPGTGVSYGHQFVSEETMPMAVVGIGYADGVPRNLS-----NQLEVLL 328

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                 +G  V  +G ITMD  M D+      +VG+ + + G D    I  D  A   GT
Sbjct: 329 ------RGQPVRQIGAITMDQMMVDLRGIDDPQVGEVVTLIGQDGDRQITADHWASTLGT 382

Query: 353 TNYDLLVRIGTRYAKF 368
            ++++L     R  + 
Sbjct: 383 ISWEILCGFKHRLPRI 398


>gi|281357855|ref|ZP_06244341.1| alanine racemase [Victivallis vadensis ATCC BAA-548]
 gi|281315802|gb|EFA99829.1| alanine racemase [Victivallis vadensis ATCC BAA-548]
          Length = 377

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 177/385 (45%), Gaps = 29/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+    + L++DL  L +N+H +       R  AV+K NAYGLG + +A  +  AG   F
Sbjct: 1   MNLESRVNLEVDLKKLADNFHEIRRRVSPCRLMAVLKANAYGLGVQPVAEVVKQAGAAAF 60

Query: 61  FVTSVEEGVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
            V  + E V+L  L  P   + +L  + P +     +  +I  ++ +      S + +  
Sbjct: 61  GVAEINEAVELVPLGLP---VQILGNLLPDEIAPAVEYGVICPLNDLEMAKKISAEAVRQ 117

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G +   A+ VD+G  RLG+   EA +           +L  I SH + A       +  Q
Sbjct: 118 GKTATGAVTVDSGMGRLGMPAAEAAEQILAMRGLPNLKLDGIYSHFSSAFMRYDDYSLGQ 177

Query: 179 LERFRTLISHYKGI-----EASLASSSGILLGPNYH---FQLTRPGISLYGGTD-KINKS 229
           L  F+TL++  KG         +A+S  +   P+     F L R GI++YG  D ++++S
Sbjct: 178 LASFKTLLAELKGAGLEFPNVHMAASDALNNFPDSTRPPFTLARCGINMYGYYDNEVHQS 237

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +  VV  + R+  +R   AG  + YG   +L +D+ +   A GYADG PL LS     
Sbjct: 238 MRLAPVVELKTRLAAVRMLAAGSCIGYGRMHRLQKDTRVGTIAAGYADGLPLALSNR--- 294

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   + G + P+LG+I+MD T   + ++   + GD +   G      + L+D
Sbjct: 295 --------GYVLVNGVLCPVLGRISMDYTTISLENAPEAQPGDEVVCIGGQDGRFVSLED 346

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
            A   GT  YDLL   GTR  + Y 
Sbjct: 347 WAQLKGTHVYDLLCSFGTRVRRRYV 371


>gi|302877856|ref|YP_003846420.1| alanine racemase [Gallionella capsiferriformans ES-2]
 gi|302580645|gb|ADL54656.1| alanine racemase [Gallionella capsiferriformans ES-2]
          Length = 353

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 175/359 (48%), Gaps = 24/359 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+NN H     + ++R  AV+K + YG G  ++A AL  A  + F +  +++ V+
Sbjct: 9   IDQNALENNLHVARR-AASSRIMAVIKADGYGHGLLRVAEAL--AAAEGFALLDIQDAVR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L G     +  +     L  VI S  Q+         G    + L+V+
Sbjct: 66  LREAGYRQTILLLEGFFDAADLALIAAYELTTVIHSNWQIALLDAYPGRGTLDVW-LKVN 124

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLG S  E ++    S         + ++SH + AD+P     S+QL     + S 
Sbjct: 125 SGMHRLGFS-PEGVNAAMKSLRAHAAVREITLMSHFSHADEPRG--VSLQLALINEIASE 181

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILI 245
           Y+ +  SLA+S+ +L  P  H    RPG+ LYG +   D   +   ++ V+T  +RII I
Sbjct: 182 YR-VARSLANSAALLRYPATHGDWVRPGVMLYGASPFADTSAQQLGLKPVMTLSSRIIAI 240

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +   AG+ V Y G  +  R   I V A GYADGYP         H+P+   G    + G 
Sbjct: 241 QNLQAGDEVGYAGVFRADRTMRIGVVACGYADGYP--------RHAPN---GTPVLVDGR 289

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              +LG+I+MDM   D+T      +G  + ++G  + ++ VA A+GT +Y+L+  +  R
Sbjct: 290 KTQLLGRISMDMLCVDLTALPDSGMGAQVTLWGQGLPVETVAAAAGTISYELMCGLTAR 348


>gi|116618901|ref|YP_819272.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097748|gb|ABJ62899.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 373

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 175/375 (46%), Gaps = 29/375 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A++ N   +   +G  R  AVVK NAYG G +++  AL+  GV DF V ++ EG
Sbjct: 14  LDIDLKAIQTNAKLIMRHAGAQRLIAVVKANAYGHGAKQVVGALFEVGVYDFAVATIGEG 73

Query: 69  VKLRLYTPQARIFV-LYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           V LR Y PQA I + L G+    Q +++ +  L P + +   L      +  G      L
Sbjct: 74  VDLRKYYPQAEINIFLLGVQDVTQTEVMVENRLSPAVGTTEWLDEAVNYIKDGQKLDVQL 133

Query: 127 QVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            VDTG  R+G     A+ D  H     +  QL+ + +H A ADD + +    Q++RF   
Sbjct: 134 AVDTGMGRMGAHSASAVEDMYHLIQGTEKFQLAGVFTHFATADDNNQNYYDEQVQRFYQW 193

Query: 186 ISHYKGIEAS---LASS-SGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
           +    GI      LA+S S I      +    R G  LYG   G  +     P++  +  
Sbjct: 194 VQS-AGIPKQYWHLANSGSAIWHHDEIYTDTIRVGSVLYGYNPGAPEKKMPLPLKPALQL 252

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++++  + +   GE VSYG      +   IA   IGYADGY   +SG+            
Sbjct: 253 KSKLGSVHQLTTGESVSYGATYTAEKPQWIATLPIGYADGYLRRMSGM------------ 300

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           K  + G++  ++G++TMD  +  IT      VG  + + G +    I ++++A  + T  
Sbjct: 301 KVLVDGHIEHVIGRVTMDQIV--ITLKQKYPVGKTVTLVGLEGENQISVEEIAEYAQTIP 358

Query: 355 YDLLVRIGTRYAKFY 369
           +++L   G R  + Y
Sbjct: 359 HEILTNFGARLPRIY 373


>gi|68536824|ref|YP_251529.1| hypothetical protein jk1734 [Corynebacterium jeikeium K411]
 gi|260579183|ref|ZP_05847073.1| D-alanine racemase [Corynebacterium jeikeium ATCC 43734]
 gi|68264423|emb|CAI37911.1| alr [Corynebacterium jeikeium K411]
 gi|258602669|gb|EEW15956.1| D-alanine racemase [Corynebacterium jeikeium ATCC 43734]
          Length = 572

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 179/394 (45%), Gaps = 53/394 (13%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M       L +DL A+ +N       +  A   AVVK +AY  G + +APA+ +AGV+  
Sbjct: 3   MSDRHLAELVVDLDAIAHNVRVFREAAAPAGVLAVVKADAYNHGVDVVAPAMLDAGVEQL 62

Query: 61  FVTSVEEGVKLRLYTP------QARIFVLYGIHPGQ---EKIIFDTNLIPVISSVPQLTF 111
            V ++ E + LR           +     +   PG+   E    D N+      VP L  
Sbjct: 63  GVATLGEALHLREILAGLGESYASAPITAWMWTPGEDLAEVFAADINV-----GVPSLAH 117

Query: 112 YSKLM--------SCGVSHPY--ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLI 160
              L+           VS P    L VDTG +R G+S  E  +      +K +L +++ +
Sbjct: 118 ARSLVDQAEKTQREAQVSAPVRVTLMVDTGLSRSGVSPAEWRETVELLASKTELVEVTAV 177

Query: 161 ISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRP 215
           ++H+A ADDP S  N++Q  RF   I     +G+      +A++   L  P+  +QL RP
Sbjct: 178 MTHMASADDPKSEANNLQAARFAEAIEFCRSRGLRVPCNHIANTPATLHRPDLAYQLVRP 237

Query: 216 GISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275
           G+ LYG  D I     ++  +T  AR+   R    GE VSY    +  RD+  AV A+GY
Sbjct: 238 GVGLYG-IDPIGVDVELRAAMTLRARVTTTRVVPKGEGVSYSHTWRAQRDTRTAVVALGY 296

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI----------TDS 325
           ADG P ++SG        V + GK +      P +G++ MD  + ++            +
Sbjct: 297 ADGLPRSVSG-----KMQVTINGKTY------PQIGRVCMDQIVVELGPADGAEGSTNGA 345

Query: 326 LSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLL 358
             ++ GD+  IFG      D+ A  +GT +Y++L
Sbjct: 346 ADVKPGDWAVIFGEGGNSADEFAELAGTISYEVL 379


>gi|123961746|gb|ABM76529.1| putative Alanine racemase [Prochlorococcus marinus str. NATL1A]
          Length = 427

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 174/380 (45%), Gaps = 29/380 (7%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D   ++NN   + N +  +    AVVK + YG G E +A +    G     V ++EE
Sbjct: 59  VEVDSKIIENNARVLKNFIGDDCSLMAVVKADGYGHGAETVAKSALTGGADSLGVATLEE 118

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           G++LR    + +I +L  +   +E    F  +LIP IS + +    + +        +  
Sbjct: 119 GIQLRNAGLKCQILILGNLINSEELYSSFCWDLIPTISGIREAIICNNIAENKHKKFFIH 178

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVN--SVQLE 180
           L+VDTG  RLG    E  D        +   L  I SHLA AD   + ++ +N   +Q+ 
Sbjct: 179 LKVDTGMTRLGCDCDEVKDLISKIDYLENISLKGIYSHLAIADKDLEKNTKLNFTQIQVT 238

Query: 181 RFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQT 234
           RF  ++    +  K +   LA+S+G L     HF + R G+SLYG    +       ++ 
Sbjct: 239 RFEKVLKDLGARNKSLCRHLANSAGTLSDSRLHFDMVRVGLSLYGYFPVNDFESDLRLKP 298

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  ++R+ L+R+   G  V YG   K  R S +AV AIGYADG    LSG  S      
Sbjct: 299 ALKVKSRVTLVREVEKGIGVGYGHFFKTQRKSKLAVVAIGYADGVSRNLSGKISAS---- 354

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  I G +VP +G I MD  +FDITD   I  G  + + G D    I   +    S
Sbjct: 355 -------IDGVLVPQVGAIAMDQMVFDITDKPDIRTGQVLTLLGTDGAVCISPQNWCDLS 407

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           G+  +++L     R  +  T
Sbjct: 408 GSIPWEVLCGFRNRLPRVVT 427


>gi|309777766|ref|ZP_07672714.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914450|gb|EFP60242.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 382

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 185/391 (47%), Gaps = 37/391 (9%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           SN    L+IDL+ + +N   +  L    ++  A+VK N YG G  + A  +   G+  F 
Sbjct: 4   SNTRSWLEIDLSRISHNIKEVQKLLPSTSKIMAIVKANGYGHGDVECARVMEQQGIDFFG 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V+SV+EGV+LR +  Q+ I VL    P     + + +LI  + S   L +  KL + G  
Sbjct: 64  VSSVDEGVRLREHGIQSPILVLGYTPPVHFHYLHEASLIQTLVS---LEYAQKLNAYGRK 120

Query: 122 HPYAL----QVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLA---CADDPS 171
           H   +    +VDTG +R+G+  QE    ++     ++     +  I SH +   C D+ +
Sbjct: 121 HDIVIKAHAKVDTGMSRIGIVAQEHAYHIEDIKALYHMDHIAVCGIFSHFSVSDCLDEEN 180

Query: 172 SHVNSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTD-- 224
                 Q+  F  +++  +  GI+     L +S GIL  PN  +   RPG+   G T   
Sbjct: 181 CRFTDHQIALFDRVLADLRAAGIDPGTTHLQNSYGILNYPNLKYDYVRPGLLWMGVTSDD 240

Query: 225 --KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             +I  +   Q ++  +A + L+++   G  VSYG   K    + +A  A+GYADG+P +
Sbjct: 241 AVEIRTAPQFQPIMEWKANVSLVKEIQPGVTVSYGRHFKAKECTRVATLAVGYADGFPRS 300

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
           +S         V L GK       VPI+G I MD  M DIT   +++ GD   + G D  
Sbjct: 301 VSN----KGACVLLHGK------RVPIIGNICMDQMMVDITGLDAVQEGDVATLIGSDGE 350

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             + +D+++  + T N + L  I  R  + Y
Sbjct: 351 ETLPVDELSRLAKTINNETLCWISQRVPRIY 381


>gi|195953382|ref|YP_002121672.1| alanine racemase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932994|gb|ACG57694.1| alanine racemase [Hydrogenobaculum sp. Y04AAS1]
          Length = 343

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 45/372 (12%)

Query: 9   LKIDLTALKNNWHSMNALSG-----NARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFV 62
           ++I L  LK N   +N +S      N    AVVK NAYG+G  +++  L  N  V+ F V
Sbjct: 1   MRIVLELLKENI--LNNISQIYNSVNKPIIAVVKANAYGMGSAEVSKVLDDNPYVKSFAV 58

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             +EE V+LR    +  I VL G+   ++ + +    L PVISS  Q   +  + + G+ 
Sbjct: 59  ACIEEAVELREVDVKKPILVLGGVLDLKDVEYLKHYKLTPVISSAYQ---FDMIKNAGID 115

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             + +++DTG  RLG   LQE +    N        L  I++HLA   D     ++ Q++
Sbjct: 116 --FHVKLDTGMGRLGFFELQEDIIGHPN--------LKGIMTHLASPLD--KDYSAFQIQ 163

Query: 181 RFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +F+ ++   K   IE    SS+G++   ++   + R G+++YG         P++ +   
Sbjct: 164 KFKNIVKSLKRNSIEIHYQSSAGLMYEKDFTTAI-RIGLAMYGEKPYEGFDIPIKPIYKV 222

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG---LDSEHSPSVF 295
           +A++I ++    G+ +SYGG   LT+D+ I V ++GYADG P +L+     D       F
Sbjct: 223 KAKVISLKNFKKGDKISYGGTYTLTKDATIGVVSMGYADGIPKSLANKWYFD-------F 275

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G K       +P++G +TMDMTMF++ + ++I++GDY+            +    T  Y
Sbjct: 276 NGAK-------LPMVGAVTMDMTMFELPEGVNIKIGDYVDFVNEGQTFSMASKIVKTIPY 328

Query: 356 DLLVRIGTRYAK 367
           +L+ R+G R  +
Sbjct: 329 ELMCRMGKRVKR 340


>gi|167752890|ref|ZP_02425017.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
 gi|167659959|gb|EDS04089.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
          Length = 790

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 175/374 (46%), Gaps = 26/374 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL A+ +N +   A L    R  A+VK  +YG G  ++A  L + GV    V   +E
Sbjct: 429 LEVDLDAMIHNLNYFRARLRPGVRLVAMVKAASYGAGDFEVAQMLQHQGVNYLAVAFADE 488

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHPYA 125
           GV LR    +  I VL     G   ++    L P I +   L F+SK +      S+P  
Sbjct: 489 GVLLRERGIRMPIVVLNA-DEGSFDLMVAHRLEPEIYNFRSLAFFSKAVERVGEESYPIH 547

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSS-HVNSVQLERFR 183
           +++DTG +RLG  ++  LD    +  +    +++ I SHL C+D P        Q+ RF 
Sbjct: 548 IKLDTGMHRLGF-MEGELDMLTETLGETPSVKVATIFSHLNCSDMPQEDRYTREQIARFD 606

Query: 184 TLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
            +           +    A+S+ I   P   F + R G+ LYG   + N    ++ V T 
Sbjct: 607 RMSGRLAAALPYPVLRHTANSAAIERFPEAQFDMCRLGLGLYGFGFEHNDE--LKPVSTL 664

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++RI+ ++   AGE V YG   KLTRDS+ A   +GYAD       GLD       +   
Sbjct: 665 KSRIVQLKHLSAGEAVGYGRAGKLTRDSVTATVPMGYAD-------GLDRHLGCGRW--- 714

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLDDVALASGTTNYD 356
              + G   PI+G++ MD  M D+TD   +E GD + IF   P    +D+A    T  Y+
Sbjct: 715 SMLVAGRPAPIVGRVCMDSCMIDVTDIPGVEEGDEVVIFSAVPGNTPEDMARVLDTIPYE 774

Query: 357 LLVRIGTRYAKFYT 370
           ++  +  R  + Y+
Sbjct: 775 VMTSVSGRVKRIYS 788


>gi|330718524|ref|ZP_08313124.1| alanine racemase [Leuconostoc fallax KCTC 3537]
          Length = 375

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 178/377 (47%), Gaps = 33/377 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L++DL A++NN  ++   +G  +  AVVK NAYG G   +  +LY  G++DF V +++EG
Sbjct: 16  LQVDLAAIQNNAKAIMKHAGAQKMIAVVKANAYGHGAVAVTNSLYAIGIRDFAVATIDEG 75

Query: 69  VKLRLYTPQARI-FVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           ++LR    Q  I  +L G+    Q  +I   +L P I  +  L   ++LM+        L
Sbjct: 76  IELRQNITQQDINILLLGVQDVAQVPVILQYHLTPAIGDIQWLMKATQLMAMDDVLNVHL 135

Query: 127 QVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            VDTG  R+G      +Q   DF   S +     LS + +H A ADD +      Q+++F
Sbjct: 136 AVDTGMGRMGARNEHDVQMVKDFIDQSSHFA---LSGVFTHFATADDHNDAYYQQQVQKF 192

Query: 183 RTLISHYKGIE--ASLASSSGILLGPN-YHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
           +   +H +  E    LA++   L   N  +    R G +LYG   GT  +     +Q  +
Sbjct: 193 QLWTTHAQIPEELCHLANTGSALWHHNEINTHTIRVGSALYGFNPGTPHLEMPLQLQPAM 252

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             + +I    +   GE +SYG      +  L+A   IGYADGY   L G+          
Sbjct: 253 ALKTKIGATHQMAVGESISYGATYTAQQPQLVATLPIGYADGYLRRLQGM---------- 302

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             K  + G+   ++G+ITMD  +  IT      VG  + + G D    I ++D+A  + T
Sbjct: 303 --KVLVDGHFEKVVGRITMDQIL--ITLKQPYPVGTIVTLMGYDGEQQISVEDIANYAKT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
             +++L  + +R  + Y
Sbjct: 359 IPHEVLTILTSRLPRIY 375


>gi|302390446|ref|YP_003826267.1| alanine racemase [Thermosediminibacter oceani DSM 16646]
 gi|302201074|gb|ADL08644.1| alanine racemase [Thermosediminibacter oceani DSM 16646]
          Length = 391

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 180/375 (48%), Gaps = 26/375 (6%)

Query: 8   RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R++I+L  L++N   +  + S NA   AVVK +AYG G  ++A    + G +   V  ++
Sbjct: 9   RVEINLDNLEHNLKEIRRITSPNAGICAVVKADAYGHGAVEVAMTALSFGAKYLAVAFLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125
           E V LR    +A I +L      Q   I +  +   + +V      S+     G+     
Sbjct: 69  EAVVLREAGIRAPILILGFTPEDQFDKILEYGITQTVYNVRSAEVLSREAQKRGMKAKVH 128

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++DTG +R+G   +  +L      F     ++  I +H A AD+        Q +++R 
Sbjct: 129 IKLDTGMSRIGFPAEPSSLSDIEKVFLLPGIEVEGIFTHFARADEEDKSFTEEQYKKYRE 188

Query: 185 LIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVV 236
            +     +G+   +   A+S+ I+  P  H  + RPGI LYG   ++++ +S   ++ V+
Sbjct: 189 TVGVLESRGLRVPIKHVANSAAIIDMPGMHLDMVRPGIILYGIYPSEEVQRSRITLKPVM 248

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T + R+  ++   AG  +SYGG     + S+IA   +GYADGYP  LS            
Sbjct: 249 TFKTRVSHVKTVPAGTPISYGGTFVTKKTSVIATLPVGYADGYPRLLSSR---------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
             +  IKG   P++G++ MD  M D+TD   ++ GD +++FG      +  D++A   GT
Sbjct: 299 -AEVVIKGRRAPLVGRVCMDQCMVDVTDIPGVQPGDEVELFGTGENGGVTADEIAKIVGT 357

Query: 353 TNYDLLVRIGTRYAK 367
             Y+++  I  R  +
Sbjct: 358 IPYEIVCGISKRVPR 372


>gi|56477426|ref|YP_159015.1| alanine racemase [Aromatoleum aromaticum EbN1]
 gi|81821118|sp|Q5P3K0|ALR_AZOSE RecName: Full=Alanine racemase
 gi|56313469|emb|CAI08114.1| Alanine racemase [Aromatoleum aromaticum EbN1]
          Length = 353

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 173/358 (48%), Gaps = 22/358 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+H   +  G  R  AVVK NAYG G  + A     A    F V  +EE
Sbjct: 5   RALIDLDALRHNYHLARSRHGG-RALAVVKANAYGHGAAQCA-RALAADADGFAVGFLEE 62

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR       I +L G+  P +   +   +L  V+    QL          +     L
Sbjct: 63  ALELRAAGIDQPILLLEGVFAPAELDEVVRHDLWIVVHHAEQLRIIDHARPA-LPLEVWL 121

Query: 127 QVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++++G NR G     L+ A     +S   K+G ++L+ +H A AD+P     + QL  F 
Sbjct: 122 KMNSGMNRAGFLSHELRPAWQRLKDS--GKVGGITLM-THFARADEPQVLATTEQLTAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
           T      G   SLA+S  IL  P  H    RPGI LYG     ++ + ++ V+T E+ +I
Sbjct: 179 TATRELPGPR-SLANSGAILGWPAAHRDWARPGILLYGADPMPDEPNGLRPVMTLESAVI 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AG  + YG +    R +   + A+GYADGYP            SV  G    + 
Sbjct: 238 AVREIPAGAPLGYGARFHAERATRAGLVALGYADGYPR-----------SVPNGTPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G    ++G+++MD+   D+TD     +G  ++++G +I ++ +A A+ T +Y+LL  +
Sbjct: 287 GLRTRLIGRVSMDLLTIDLTDLPDAGLGSRVELWGANIPVNRIAQAAKTISYELLCNV 344


>gi|291298088|ref|YP_003509366.1| alanine racemase [Stackebrandtia nassauensis DSM 44728]
 gi|290567308|gb|ADD40273.1| alanine racemase [Stackebrandtia nassauensis DSM 44728]
          Length = 366

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 177/375 (47%), Gaps = 38/375 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVV----KDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL  +  N   + AL+G  RT+A V    K N YG G    A A  + G     V +++
Sbjct: 9   VDLGTIAAN---VEALAG--RTSAAVMPALKANGYGHGLVPAARACLDGGASRLGVATLD 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR     A I   + + PG +     D ++   ++S  QL   S +   G  HP  
Sbjct: 64  EAMELRNSGVAAPILA-WLVAPGLDLAAAVDADIELAVASREQL---SAVADAGARHPAR 119

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLI--ISHLACADDPSSHVNSVQLE 180
             L+ DTG  R G    E       +   +  G++ ++   SHLACAD+P + +   Q +
Sbjct: 120 IHLKADTGMGRGGAPRAEWQTLVDLAAKAQADGRIEIVGAFSHLACADEPGNPLTQSQDD 179

Query: 181 RFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            FR  +      +       LA+S+G+L  P+ H+ L RPGI++YG    +    P++  
Sbjct: 180 NFRDFLDLLWAADVQPQWQHLANSAGLLAHPDTHYNLVRPGIAVYG-YPPVATEAPLRPA 238

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  AR++L++   AG  + YG      R + +A+  +GYADG P + S     +   V 
Sbjct: 239 MTLRARVVLVKTLPAGHGIGYGHTYVTKRPTRVAIVPLGYADGIPRSTS-----NRAEVL 293

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTN 354
           +GG+        PI G+++MD  +    D   +  GD ++ FG  DI  +D A    T +
Sbjct: 294 VGGR------RCPIRGRVSMDQVVV-EVDEGDVRAGDVVEFFGDGDITAEDWATWHDTIS 346

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  IG R  + Y
Sbjct: 347 YEILTSIGPRIPRRY 361


>gi|189218087|ref|YP_001938729.1| Alanine racemase [Methylacidiphilum infernorum V4]
 gi|259710070|sp|B3DWZ0|ALR_METI4 RecName: Full=Alanine racemase
 gi|189184945|gb|ACD82130.1| Alanine racemase [Methylacidiphilum infernorum V4]
          Length = 387

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 182/371 (49%), Gaps = 26/371 (7%)

Query: 9   LKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  AL+ N   +   +    +  AVVK  AYG G   IA  L ++GV+   + +++E
Sbjct: 19  VEIDGRALRFNIRVARERIPKKTKIIAVVKSEAYGHGLIPIAKELVHSGVEVLGINNIDE 78

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
            ++LR    ++ + +L  I P +  II   N+  VISS  +  + S+     G      +
Sbjct: 79  AIELRQAGIRSALLILCPILPSEASIIVSYNVGVVISSYNEAKWLSQAAERQGKKAIVHI 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACA--DDPSSHVNSVQLERF 182
           ++DTG  RLG    + +        K+L  LS+  I +H + A  D  ++    ++L +F
Sbjct: 139 KIDTGMGRLGFIPSQFIQEMEKI--KRLSSLSIAAICTHFSQAETDIEATEKQWLELLKF 196

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           R    ++KG+   +A+S+ +     Y     R G++LYG          ++ ++T + +I
Sbjct: 197 R---HYFKGLPIHVANSAALWRKSVYACDYVRIGLALYGIAPMPFLRRFLKPILTWKCKI 253

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +LI++   G  +SYG   KL + S IAV ++GY DGY  +LS   S             I
Sbjct: 254 VLIKELPRGHPISYGATYKLKKPSRIAVLSVGYGDGYCRSLSNKASV-----------LI 302

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358
           KG   P+ G ITM++ M DITD  S +VGD   + G      I  D++A  S T +Y+++
Sbjct: 303 KGKRCPVRGAITMNLLMVDITDLPSCKVGDEAVLLGTQGKESITADELAKLSQTISYEII 362

Query: 359 VRIGTRYAKFY 369
             I +   + Y
Sbjct: 363 TNIHSHIRRNY 373


>gi|20808552|ref|NP_623723.1| alanine racemase [Thermoanaerobacter tengcongensis MB4]
 gi|23813661|sp|Q8R860|ALR2_THETN RecName: Full=Alanine racemase 2
 gi|20517179|gb|AAM25327.1| Alanine racemase [Thermoanaerobacter tengcongensis MB4]
          Length = 388

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 180/385 (46%), Gaps = 43/385 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R++++L ++ +N+  +  + G+  +   VVK NAYG G   +A AL   GV    V +VE
Sbjct: 9   RVEVNLDSIVHNFREIKRVVGDRVKVMGVVKANAYGHGAYHVAKALVENGVDYLAVATVE 68

Query: 67  EGVKLRLYTPQARIFVLYGIHP------GQEKII----FDTNLIPVISSVPQLTFYSKLM 116
           E ++LR Y   A + +L G  P        EK +    FD   +  +  +          
Sbjct: 69  EALELRSYGITAPVLIL-GYTPLSQAGEAVEKDVTFTAFDLKYVKELGEIAS-------- 119

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175
             G      +++DTG  R+G +  +  +      +K  G +L  I SH A +D+      
Sbjct: 120 RKGKKAKIHVKIDTGMGRIGYTDFDLAEREIEEMSKLEGIELEGIFSHFATSDEKDKDYA 179

Query: 176 SVQLERFRTLISHY--KGIEASLA--SSSGILLGPNY-HFQLTRPGISLYGG--TDKINK 228
             Q ERF  ++     +G+  +L   ++SG +   NY +  + RPGI+LYG   ++ +NK
Sbjct: 180 REQFERFADMLKRLEKRGVNITLKHIANSGAITDLNYAYLDMVRPGITLYGSYPSNDVNK 239

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +  + +I+ I++      +SYG      R S IA   IGYADG    LS   +
Sbjct: 240 ILDLRPAMNFKTKIVYIKEVPENTSISYGRTFITKRPSKIATLPIGYADGLNRLLS---N 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
            H           ++G  VPI+G++ MD TM D+T+   +EVGD + IFG      I  D
Sbjct: 297 NHEV--------LVRGKYVPIVGRVCMDQTMIDVTEVEGVEVGDEVVIFGEQEGKRITAD 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           D+A    T  +++   I  R  + Y
Sbjct: 349 DIAKKLRTIPHEVYCGISRRVPRIY 373


>gi|187933435|ref|YP_001885767.1| alanine racemase [Clostridium botulinum B str. Eklund 17B]
 gi|187721588|gb|ACD22809.1| alanine racemase [Clostridium botulinum B str. Eklund 17B]
          Length = 386

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 175/380 (46%), Gaps = 37/380 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A+  N  ++  L+ N    AVVK + YG G   + P L   G     V  + E +
Sbjct: 11  EIDLDAIAYNMRNIKKLAQNKDVIAVVKADCYGHGALDVVPTLLENGASRLAVAVLTEAI 70

Query: 70  KLRLYTPQARIFVLYGIHPG---QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           +LR     A I +L G  P    +E + +D     +  +V  L +  KL    +      
Sbjct: 71  ELRNNNITAPIMIL-GYTPEYLFEEVVNYD-----IEQTVYDLEYAKKLSHLAIKFNKKA 124

Query: 127 QV----DTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           +V    DTG  R+G +  ++A+      +N K   +  I +H + +D+      + Q  +
Sbjct: 125 KVHIAIDTGMGRIGFIPNEKAIKDIKKIYNLKGLDVIGIFTHFSTSDETDKEYTNEQFNK 184

Query: 182 FRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQ 233
           F + I     +   +     ++S  I+  P  +    R GI LYG   +D+INK +  ++
Sbjct: 185 FTSFIDMLSKVGVKIPIKHISNSGAIIDMPKTYLDSVRAGIILYGYYPSDEINKDNIKLK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T +A +  +++      +SYG   K  R S+IA   IGYADGY   L+         
Sbjct: 245 PALTLKASLTRVQELDINSYISYGKTFKTERKSIIATLPIGYADGYSRLLAP-------- 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKL--DDVALA 349
              G K  I G   PI+G+I MD  M D+TD   I VGD + I G D  +KL  +D+A +
Sbjct: 297 ---GAKVIINGKFSPIIGRICMDQCMIDVTDIDDIHVGDEVIILGEDGNLKLTANDLAKS 353

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY++L  +  R  + Y
Sbjct: 354 MGTINYEILCMLKYRIPRVY 373


>gi|229167180|ref|ZP_04294921.1| Alanine racemase [Bacillus cereus AH621]
 gi|228616218|gb|EEK73302.1| Alanine racemase [Bacillus cereus AH621]
          Length = 398

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 178/383 (46%), Gaps = 41/383 (10%)

Query: 9   LKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL AL+ N+     A+        VVK NAYG G   IA A+  AG     V  V+E
Sbjct: 11  IEVDLNALQRNFQQYKQAIPFGTAIMTVVKANAYGHGAVPIAKAVTEAGTSHLAVAFVDE 70

Query: 68  GVKLRLYTPQARIFV---LYGIHPGQ---EKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           G++LR    +A I V   ++G  P +   + I +D ++   + ++  L    ++ S    
Sbjct: 71  GIELR----EAGITVPILIFGYTPYEAIVDAITYDLSM--TVYTIEDLHAIEEVASQMEK 124

Query: 122 HPYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + Y  +++DTG +RLGL L E   F       K  Q+  + +H ACAD+       +Q E
Sbjct: 125 NAYIHIKIDTGMSRLGLQLNEVTLFLQTLKCTKYIQVEGMYTHFACADERDKMYTLMQQE 184

Query: 181 RFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPM 232
            F+  +S  + ++  +      +S+  +        + R GI+LYG     D   ++  +
Sbjct: 185 VFQKAVSKAEELQIVIPWIHANNSAATIDMRETKGNMVRLGIALYGLYPSADVNQEAISL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q ++  ++++  I+K   G  V YG     T +  IA   +GYADG    LS        
Sbjct: 245 QPILIFKSKVAHIKKVKKGNGVGYGATYTATGEEWIATIPVGYADGVSRQLSN------- 297

Query: 293 SVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDV 346
                 KGF  IKG  VPI+G+I MD  M D+T  + I VGD +  +G      I +D V
Sbjct: 298 ------KGFVLIKGMKVPIIGRICMDQLMLDVTKIMPIHVGDEVVFYGNQGEESISVDCV 351

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T NY++   +  R  + Y
Sbjct: 352 ADILSTINYEITCMLSRRIPRIY 374


>gi|223938778|ref|ZP_03630666.1| alanine racemase [bacterium Ellin514]
 gi|223892476|gb|EEF58949.1| alanine racemase [bacterium Ellin514]
          Length = 392

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 171/374 (45%), Gaps = 25/374 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL  L+ N+  +N   +   +   VVKD AYG G  K+A A   AGV+   +++++E
Sbjct: 29  IEIDLKQLRRNYEVINREKTKGLKLLLVVKDEAYGHGGLKVAKAALEAGVEFLSLSNLDE 88

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
            + LR      RI +L      +       NL   + S   +    KL    G   P  L
Sbjct: 89  AMALRGGGIDTRILLLGERQDEELPWCVAQNLTCCVDSQEVVLKLGKLAEKVGRPVPVHL 148

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++TG NR G+   EAL       + K  Q   ++SH A +D+      ++QLERF+ ++
Sbjct: 149 KINTGMNRYGVRWTEALALVEFILSTKSLQFEGVLSHFAMSDELDKTFANLQLERFKMVL 208

Query: 187 SHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSHP-MQTVVTAE 239
           +    K I      + +S G L  P  HF + R G+  YG    ++ +  P +  V++ +
Sbjct: 209 AELADKSIHVKYRHICNSGGFLDLPQAHFDMVRIGLLQYGVYPSQVCRRIPGIAPVMSVK 268

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARI   +   A ++V YG + K      I V  IGY DGY            P +   G 
Sbjct: 269 ARIAAFQNIEAEDVVGYGMRYKAPSPRRIGVIPIGYGDGY------------PRIRNEGY 316

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             I+G   P++G + MD  M D+TD    ++ + I + G     +I + DVA    + +Y
Sbjct: 317 VLIRGRRAPLVGGVAMDAIMVDVTDVPEAQLWEEIVLMGRQGDEEISVHDVARWKNSVSY 376

Query: 356 DLLVRIGTRYAKFY 369
           D+L     R  + Y
Sbjct: 377 DILTGWRARLPRIY 390


>gi|148378278|ref|YP_001252819.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|153930927|ref|YP_001382679.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|153935439|ref|YP_001386230.1| alanine racemase [Clostridium botulinum A str. Hall]
 gi|148287762|emb|CAL81828.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|152926971|gb|ABS32471.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|152931353|gb|ABS36852.1| alanine racemase [Clostridium botulinum A str. Hall]
          Length = 404

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 188/391 (48%), Gaps = 44/391 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L  L +N   +  ++ +    +VVK +AYG G  +IA  L   G     V  + E 
Sbjct: 10  IEINLDNLIHNMKEIRRVARSKEIISVVKADAYGHGALEIASLLLENGANRLAVAVLSEA 69

Query: 69  VKLRLYTPQARIFVLYGIHP----------GQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           ++LR     A I +L G  P            E II +   + V S         K    
Sbjct: 70  LELRNSGITAPIIIL-GYTPLRYDERTICNNAETIIKNDLEVSVSSYKYAEQLSKKAQQL 128

Query: 119 GVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSS 172
           G      + +DTG  RLG L  +E L+  +     ++ +L  II     SH + AD+ + 
Sbjct: 129 GKDVKIHVNIDTGMGRLGFLPTEENLEKIY-----QISKLPNIIFEGLFSHFSTADEKNK 183

Query: 173 HVNSVQLERFRTLISHYKGIEAS-------LASSSGILLGPNYHFQLTRPGISLYG--GT 223
              + Q ++F  L  +YK  + +       +A+S+ ++  P  H    RPGI+ YG   +
Sbjct: 184 EYTNEQFKKF--LDFYYKLRDKNVKVNIKHIANSAALIDLPYTHLDAVRPGIAQYGYYPS 241

Query: 224 DKIN-KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            ++N K   ++ ++T +  I+L++   +G+ +SYG + +  R+S IAV  IGYADGY   
Sbjct: 242 SEVNHKDINLRPIMTLKTNIVLVKDIKSGQSISYGRKFRTIRNSKIAVLPIGYADGYERE 301

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---- 338
           LS  ++ +   V + G+        PI+G+ITMDM M D+TD   ++VGD + + G    
Sbjct: 302 LSNENNVYKAQVIVNGR------RAPIVGRITMDMCMIDVTDIGDVKVGDEVILIGECND 355

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             I ++D+A    T  Y++  RI  R  ++Y
Sbjct: 356 ERISVEDIANLLNTIPYEVTSRISKRIPRYY 386


>gi|260893600|ref|YP_003239697.1| alanine racemase [Ammonifex degensii KC4]
 gi|260865741|gb|ACX52847.1| alanine racemase [Ammonifex degensii KC4]
          Length = 369

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 174/376 (46%), Gaps = 31/376 (8%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++   AL++N   +  + G + R   +VK NAYG G   +A  L  AGV    V   +E 
Sbjct: 8   EVSREALRHNLRVVKEIVGPSVRVMGIVKANAYGHGLVPVAKILEEAGVDWLGVARGQEA 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
           ++LR       I VL  +HP +   +    +     S   L  ++ +    G       +
Sbjct: 68  LELRREGVDHPILVLGYVHPAECPALLAQEVTLTAYSEDILREWAGIAQREGKRLKVHFK 127

Query: 128 VDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VDTG  RLG   + A  +           ++  I +H ACAD P       QLE+F  L+
Sbjct: 128 VDTGMGRLGFKAEPAGKEAILRLAALPRVEVEGIYTHFACADLPDEKPTRDQLEKFIMLL 187

Query: 187 SHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVT 237
              +  G+   L   A+S+ ++     H  + RPGI LYG     + ++N S  M    T
Sbjct: 188 EELERAGLSIPLRHAANSAALIRFRESHLDMVRPGIMLYGLLPFPSARVNLSPAM----T 243

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +AR++ +++  AG  VSYG   + +R SL+A  A GY DGY   LS             
Sbjct: 244 LKARVVQVKRVGAGFPVSYGWTYRTSRPSLLATVAAGYGDGYSRLLSN-----------K 292

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G+  ++G  VP++G++ MD  + D T+   +E G+ + +FG      + ++++A   GT 
Sbjct: 293 GEVLLRGRRVPVVGRVCMDQLIVDATELGEVEPGEEVVLFGRQGEVSLPVEELAEKIGTI 352

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 353 NYEVVCAVSARVPRVY 368


>gi|262279566|ref|ZP_06057351.1| alanine racemase [Acinetobacter calcoaceticus RUH2202]
 gi|262259917|gb|EEY78650.1| alanine racemase [Acinetobacter calcoaceticus RUH2202]
          Length = 356

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 174/360 (48%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 8   IDRHALQYNLNRVKQLAANSKIVSMVKANAYGHGIKDCLAAL-NAS-DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    Q  + ++ G  +  +  I  +     VI    Q  +  K     ++    + V 
Sbjct: 66  IRELGFQQPVTLIEGAFYEDEMPIAIEQKFECVIHHQQQFEWLIKHKQEYIAQGLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG  + E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKVPEIIEVIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
               + AS  +S+ I   P  HF   RPGI LYG +   DK      ++ V++  A +I 
Sbjct: 183 ACDPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADKTVHDLDLKPVMSFTAEVIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP         +    ++     I G
Sbjct: 243 LNHIQAGEHVGYGSTFCAQQKMDIAIVSIGYGDGYP-------RAYIKQNYVA----IDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T ++ +++G  ++++G    +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QLCPVVGRVSMDMLAIDVT-AIQVKLGSQVELWGTHRLVDDVADANGTIGYELLCRLSNR 350


>gi|292669625|ref|ZP_06603051.1| alanine racemase [Selenomonas noxia ATCC 43541]
 gi|292648834|gb|EFF66806.1| alanine racemase [Selenomonas noxia ATCC 43541]
          Length = 368

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 171/374 (45%), Gaps = 28/374 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL A+ +N+  +   +   A+  AVVK +AYG G   +A     AG +   V ++ E
Sbjct: 8   VEIDLGAIAHNYGEIRKYIRHEAKLCAVVKADAYGHGAIAVARKAIAAGAEYLAVATISE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126
            +KLR       + +L    P     I D +L   +  +  +   S +  + G      +
Sbjct: 68  ALKLREAGFTTPLLILGLTKPESSFDIVDADLTQTVCRIDLVQALSAEATAQGKRVKVHI 127

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTG  R+G+  ++A DF          +L  I SH A AD      +  Q++ F+   
Sbjct: 128 AVDTGLGRIGVRPEDAADFAKKITALPGIELEGIFSHFALADIEDKSFSRHQIKLFQIAC 187

Query: 187 SHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVV 236
           +   G+EA+        +A S+ IL  P+ HF + R GI  YG       +HP  ++  +
Sbjct: 188 T---GVEAAGIHIPLRHIAESAAILDLPDVHFDMVRAGILQYGLWPSNEVAHPFYLRPAM 244

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              ARI+ I+    G  + YG      R++ IA  ++GYADGY               + 
Sbjct: 245 KFCARIVYIKTISPGTSIGYGRHFIAERETRIATISVGYADGYI------------RAYA 292

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNY 355
            G   I+G    I G+I MD  M DITD    ++GD + +FG D +  DD+A  + T +Y
Sbjct: 293 CGAVEIRGKRAAIAGRICMDQCMVDITDIPEAKIGDVVTLFGSDTLPADDLAEWANTISY 352

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +    ++ Y
Sbjct: 353 EVLCLVSKHVSRVY 366


>gi|239501434|ref|ZP_04660744.1| alanine racemase [Acinetobacter baumannii AB900]
          Length = 356

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  A + N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 8   IDRQAFQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAAL-NAS-DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    +  + ++ G+    E  +  +     VI    Q  +  K     ++    + V 
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG    E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKDPEIIEVIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLHIKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   DK      ++ V+T  A II 
Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP         +    F+     I G
Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYP-------RAYVKQNFVA----IDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350


>gi|251780841|ref|ZP_04823761.1| alanine racemase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085156|gb|EES51046.1| alanine racemase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 386

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 177/380 (46%), Gaps = 37/380 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A+  N  ++  L+ N    AVVK + YG G   + P L   G     V  + E +
Sbjct: 11  EIDLDAIAYNMKNIKKLAQNKDVIAVVKADCYGHGALDVVPTLLENGASRLAVAVLTEAI 70

Query: 70  KLRLYTPQARIFVLYGIHPG---QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           +LR     A I +L G  P    +E + +D     +  +V  L +  KL    +      
Sbjct: 71  ELRNNNVTAPIMIL-GYTPEYLFEEVVNYD-----IEQTVYDLEYAKKLSHLAIKFNKKA 124

Query: 126 ---LQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + +DTG  R+G +  ++A+      +N K   +  I +H + +D+      + Q  +
Sbjct: 125 KIHIAIDTGMGRIGFIPNEKAIKDIKKIYNLKGLDVIGIFTHFSTSDETDKEYTNEQFNK 184

Query: 182 FRTLISHYKGIEASL----ASSSGILLG-PNYHFQLTRPGISLYG--GTDKINKSH-PMQ 233
           F + I     +   +     S+SG ++  P  +    R GI LYG   +D+INK +  ++
Sbjct: 185 FTSFIDMLSKVGVKIPIKHTSNSGAIIDLPKTYLDSVRAGIILYGYYPSDEINKDNIKLK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T +A +  +++      +SYG   K  R S+IA   IGYADGY   L+         
Sbjct: 245 PALTLKASLTRVQELDINSYISYGKTFKTERKSIIATLPIGYADGYSRLLAP-------- 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKL--DDVALA 349
              G K  I G   PI+G+I MD  M D+TD  ++ VGD + I G D  +KL  +D+A +
Sbjct: 297 ---GAKVIINGQFAPIVGRICMDQCMIDVTDIDNVNVGDEVIILGEDGNLKLTANDLANS 353

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY++L  +  R  + Y
Sbjct: 354 MGTINYEILCMLKYRIPRVY 373


>gi|255306640|ref|ZP_05350811.1| serine/alanine racemase [Clostridium difficile ATCC 43255]
          Length = 712

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 177/375 (47%), Gaps = 35/375 (9%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL  L++N   +  A+  +    AVVK NAYG    ++A      GV+ F V +++E
Sbjct: 348 IEIDLNNLEHNVKMIQKAMPEDCELMAVVKANAYGHSAFEVATCANQIGVKAFAVATIDE 407

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ LR Y     I +L   +P + K +   NL   +  +      +K      SH   ++
Sbjct: 408 GIDLRRYGILGEILILGYTNPIRAKELHKYNLTQSVIDLNHAISLNKQKYNIKSH---IK 464

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERFRT 184
           +DTG +RLG  + +       +F  K   +  I +HL  +D   D      + Q+E F  
Sbjct: 465 IDTGMHRLGFDVNDVRSIL-KAFKLKYLDICGIFTHLCVSDSLKDEDVDFTNKQIECFYK 523

Query: 185 LISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----V 235
           LI     KGI+     + SS G    PN      R GI+LYG     N +  +Q     V
Sbjct: 524 LIDFLLKKGIKIPKVHIQSSYGFFNYPNLKCNYVRIGIALYGILSSPNDTTKLQLDLRPV 583

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++++ILIRK    +   YG     +RDS+IA+ +IGYADG P  LS           
Sbjct: 584 LSLKSQVILIRKIQKDDSFGYGRVFIASRDSVIAILSIGYADGIPRNLS----------- 632

Query: 296 LGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
             GK +  I G    I+G+I MD    DITD  ++EVG+   I G D    +   +VA  
Sbjct: 633 -CGKSYVIINGCRAAIVGRICMDQLAVDITDIPNVEVGNTAIIIGRDNLSELSASEVANN 691

Query: 350 SGTTNYDLLVRIGTR 364
           S + + +LL R+G R
Sbjct: 692 SCSISNELLSRVGRR 706


>gi|126699232|ref|YP_001088129.1| serine/alanine racemase [Clostridium difficile 630]
 gi|254975261|ref|ZP_05271733.1| serine/alanine racemase [Clostridium difficile QCD-66c26]
 gi|255092651|ref|ZP_05322129.1| serine/alanine racemase [Clostridium difficile CIP 107932]
 gi|255314388|ref|ZP_05355971.1| serine/alanine racemase [Clostridium difficile QCD-76w55]
 gi|255517066|ref|ZP_05384742.1| serine/alanine racemase [Clostridium difficile QCD-97b34]
 gi|255650170|ref|ZP_05397072.1| serine/alanine racemase [Clostridium difficile QCD-37x79]
 gi|260683293|ref|YP_003214578.1| serine/alanine racemase [Clostridium difficile CD196]
 gi|260686889|ref|YP_003218022.1| serine/alanine racemase [Clostridium difficile R20291]
 gi|115250669|emb|CAJ68493.1| Alanine racemase 1 [Clostridium difficile]
 gi|260209456|emb|CBA62968.1| serine/alanine racemase [Clostridium difficile CD196]
 gi|260212905|emb|CBE04150.1| serine/alanine racemase [Clostridium difficile R20291]
          Length = 712

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 177/375 (47%), Gaps = 35/375 (9%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL  L++N   +  A+  +    AVVK NAYG    ++A      GV+ F V +++E
Sbjct: 348 IEIDLNNLEHNVKMIQKAMPEDCELMAVVKANAYGHSAFEVATCANQIGVKAFAVATIDE 407

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ LR Y     I +L   +P + K +   NL   +  +      +K      SH   ++
Sbjct: 408 GIDLRRYGILGEILILGYTNPIRAKELHKYNLTQSVIDLNHAISLNKQKYNIKSH---IK 464

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERFRT 184
           +DTG +RLG  + +       +F  K   +  I +HL  +D   D      + Q+E F  
Sbjct: 465 IDTGMHRLGFDVNDVRSIL-KAFKLKYLDICGIFTHLCVSDSLKDEDVDFTNKQIECFYK 523

Query: 185 LISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----V 235
           LI     KGI+     + SS G    PN      R GI+LYG     N +  +Q     V
Sbjct: 524 LIDFLLKKGIKIPKVHIQSSYGFFNYPNLKCNYVRIGIALYGILSSPNDTTKLQLDLRPV 583

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++++ILIRK    +   YG     +RDS+IA+ +IGYADG P  LS           
Sbjct: 584 LSLKSQVILIRKIQKDDSFGYGRVFIASRDSVIAILSIGYADGIPRNLS----------- 632

Query: 296 LGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
             GK +  I G    I+G+I MD    DITD  ++EVG+   I G D    +   +VA  
Sbjct: 633 -CGKSYVIINGCRAAIVGRICMDQLAVDITDIPNVEVGNTAIIIGRDNLSELSASEVANN 691

Query: 350 SGTTNYDLLVRIGTR 364
           S + + +LL R+G R
Sbjct: 692 SCSISNELLSRVGRR 706


>gi|296101876|ref|YP_003612022.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056335|gb|ADF61073.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 356

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 182/371 (49%), Gaps = 44/371 (11%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL ALK+N   +   +  +R  +VVK NAYG G ++I  AL  +    F + ++EE +
Sbjct: 8   QLDLQALKDNLQIVRRAAPGSRVWSVVKANAYGHGIDRIWSAL--SATDGFALLNLEEAI 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
            LR    +  I +L G     +  + D   +   +SV        +    +  P    L+
Sbjct: 66  LLRERGWKGPILLLEGFFHADDLPLLDKYRL--TTSVHSNWQIKAIQDAKLHAPLDIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-----KKLGQLSLIISHLACADDPSSHVNS-VQLER 181
           V++G NRLG   +      H  +      K +G+++L+ +H A A+ P    ++ V++E+
Sbjct: 124 VNSGMNRLGFQPER----VHTVWQQLRALKNVGEMTLM-AHFADAEKPDGIADAMVRIEQ 178

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
                   +G++   SL++S+  L  P  H+   RPGI LYG +      D  N    ++
Sbjct: 179 A------AEGLDCPRSLSNSAATLWHPEAHYNWVRPGIVLYGASPSGQWQDIANSG--LK 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AG+ V YG + + T +  I + A GYADGYP          +PS
Sbjct: 231 PVMTLRSEIIGVQTLKAGDTVGYGSRYRATGEQRIGIVAGGYADGYPRI--------APS 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G   ++ G     +G ++MDM   D+T      +G  ++++G ++K+DDVA A+GT 
Sbjct: 283 ---GTPVWVDGVRTGTVGTVSMDMLAVDLTPCPQAGIGSPVELWGNEVKIDDVAAAAGTV 339

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 340 GYELMCALAPR 350


>gi|206563057|ref|YP_002233820.1| alanine racemase [Burkholderia cenocepacia J2315]
 gi|198039097|emb|CAR55060.1| alanine racemase, catabolic [Burkholderia cenocepacia J2315]
          Length = 373

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 175/360 (48%), Gaps = 33/360 (9%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +      +R  AVVK NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTVAPSRVWAVVKANAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L G+  P   ++     L   +    QL     L++     P  +Q  +++G
Sbjct: 71  GWDKPVLLLEGVFEPADVELADRYRLTVAVHCDEQLDL---LIAAKPRQPIDIQLKMNSG 127

Query: 132 FNRLG---LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
            NRLG    + + A +   ++    +G+++L++ H A AD+    V+  QLE+F    + 
Sbjct: 128 MNRLGYRPAAFRAAWERAASA--PSIGKITLMM-HFANADE--GEVDW-QLEQFDATTAG 181

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIIL 244
             G E S+++S+ +L  P  H    RPG  LYG +      H    P+   +T  ++II 
Sbjct: 182 IPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLVAAMTLTSKIIG 240

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++     E V YG +    R   I V A GYADGYP         H+P+   G    + G
Sbjct: 241 VQTLAPEETVGYGRRFTADRPMRIGVVACGYADGYP--------RHAPT---GTPIAVDG 289

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 290 VMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCALARR 349


>gi|114319749|ref|YP_741432.1| alanine racemase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226143|gb|ABI55942.1| alanine racemase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 365

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 174/369 (47%), Gaps = 28/369 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVE 66
           R +I L AL++N+  + + +  AR  AV+K + YG G +++A  L  AG  D F V+ V+
Sbjct: 9   RARIRLEALRHNYRLLRSSAPGARVMAVIKADGYGHGIDRVARTL--AGEADCFAVSGVD 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHP 123
           E + +R       + +L G     E  +       PV+ S  Q+     L S G   S  
Sbjct: 67  EAMPIRAAGATQPVVLLGGFFAAAEIPLHVREGFQPVVHSWWQV---EALASAGPHESLD 123

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDPSSHVNSVQLER 181
             ++VD+G +RLG    E  +  H        L Q+  + +HLA ADD  S     QL  
Sbjct: 124 VWIKVDSGMHRLGFLPGEVAE-VHRRLTALPNLRQIGFL-THLAEADDRDSPRTLEQLRV 181

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTA 238
           F    +   G   S A+S+G L  P  H+   RPGISLYG +  I++  P   ++ V+T 
Sbjct: 182 FDQACAGLPGPR-SAANSAGTLGWPAAHYDWVRPGISLYGASPFIDQGRPRPDLRPVMTL 240

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+ +I +++  AG  + YG   +      + V AIGY DGYP         H+PS   G 
Sbjct: 241 ESGLISVKRLPAGAPIGYGSTWRCPEAMPVGVVAIGYGDGYP--------RHAPS---GT 289

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    +LG+++MD+   D+        G  + ++G  +  + +A  +GT  Y+L 
Sbjct: 290 PVRVDGVESQLLGRVSMDLITVDLRPCPEARPGAPVVLWGDGLPAETIAERAGTIAYELY 349

Query: 359 VRIGTRYAK 367
            ++  R  +
Sbjct: 350 CQVTPRAPR 358


>gi|71065518|ref|YP_264245.1| alanine racemase [Psychrobacter arcticus 273-4]
 gi|71038503|gb|AAZ18811.1| alanine racemase [Psychrobacter arcticus 273-4]
          Length = 368

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 186/369 (50%), Gaps = 23/369 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I   A+ +N + +   +   +  A+VK NAYG G   + PAL  A      V ++ E 
Sbjct: 4   ITIKPAAITHNLNQVKKFAPETKVLAMVKANAYGHGVAAVLPALQQAN--GVGVATLIEA 61

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTF---YSKLMSCGVSHPY 124
           ++ R       I ++ G     E +   + ++  VI   PQLT+   ++  + C     +
Sbjct: 62  LEARQLGWDKTIALIEGAFTVDEWRQAIEHDISCVIHHAPQLTWALEHTPPVHCATRVVW 121

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+ +TG NRLG +  + +       ++   QL ++ +H A ADD +  +N++Q++RF  
Sbjct: 122 -LKYNTGMNRLGFN-ADGVIVAAQRLHEAGYQL-ILTTHFANADDQTHPLNAMQIQRFND 178

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVV 236
           ++S  +      ++ SL +S+GI+  P +H    RPGI LYG T  I++S     +Q  +
Sbjct: 179 MLSTLQETVSADVQGSLCNSAGIVNFPTHHHDWVRPGIMLYGSTPVIDQSAYELDLQAAM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              A+II ++   AGE + YG +    +D+  A+ ++GY DGYP  ++  D  +   +  
Sbjct: 239 EFSAQIIALQTVNAGEGIGYGSRWLAQQDTRTALVSVGYGDGYPRVIA--DKTYVTVIDT 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
                 + Y   ++G++ MDM + D+++      +   + ++G   ++D+VA  +GT +Y
Sbjct: 297 INH---QSYPCTVIGRVAMDMIVIDVSNVPEGTALNSKVILWGNAPRVDEVATHAGTISY 353

Query: 356 DLLVRIGTR 364
           +LL R+  R
Sbjct: 354 ELLCRLSLR 362


>gi|170758199|ref|YP_001785612.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405188|gb|ACA53599.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
          Length = 404

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 188/391 (48%), Gaps = 44/391 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L  L +N   +  ++ +    +VVK +AYG G  +IA  L   G     V  + E 
Sbjct: 10  IEINLDNLIHNMKEIRRVARSKEIISVVKADAYGHGALEIASLLLENGANRLAVAVLSEA 69

Query: 69  VKLRLYTPQARIFVLYGIHP----------GQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           ++LR     A I +L G  P            E II +   + V S         K    
Sbjct: 70  LELRNNGITAPIIIL-GYTPLRYDEKTICNNAETIIKNDLEVSVSSYKYAEQLSKKAQQL 128

Query: 119 GVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSS 172
           G      + +DTG  RLG L  +E L+  +     ++ +L  II     SH + AD+ + 
Sbjct: 129 GKDVKIHVNIDTGMGRLGFLPTEENLEKIY-----QISKLPNIIFEGLFSHFSTADEKNK 183

Query: 173 HVNSVQLERFRTLISHYKGIEAS-------LASSSGILLGPNYHFQLTRPGISLYG--GT 223
              + Q ++F  L  +YK  + +       +A+S+ ++  P  H    RPGI+ YG   +
Sbjct: 184 DYTNEQFKKF--LDFYYKLRDKNVKVNIKHIANSAALIDLPYTHLDAVRPGIAQYGYYPS 241

Query: 224 DKIN-KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            ++N K   ++ ++T +  I+L++   +G+ +SYG + +  R+S IAV  IGYADGY   
Sbjct: 242 SEVNHKDINLRPIMTLKTNIVLVKDIKSGQSISYGRKFRTIRNSKIAVLPIGYADGYERE 301

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---- 338
           LS  ++ +   V + G+        PI+G+ITMDM M D+TD   ++VGD + + G    
Sbjct: 302 LSNENNVYKAQVIVNGR------RAPIVGRITMDMCMIDVTDIGDVKVGDEVILIGECND 355

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             I ++D+A    T  Y++  RI  R  ++Y
Sbjct: 356 ERISVEDIADLLNTIPYEVTSRISKRIPRYY 386


>gi|115358240|ref|YP_775378.1| alanine racemase [Burkholderia ambifaria AMMD]
 gi|115283528|gb|ABI89044.1| alanine racemase [Burkholderia ambifaria AMMD]
          Length = 373

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 171/358 (47%), Gaps = 29/358 (8%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R  AV+K NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L GI  P   ++     L   +    QL     L++     P  +Q  +++G
Sbjct: 71  GWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQLDL---LIAAKPRQPLDIQLKMNSG 127

Query: 132 FNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
            NRLG         +   +    +G+++L++ H A AD+    V+  QLE+F    +   
Sbjct: 128 MNRLGYRPYAFRAAWERAAAAPSIGKITLMM-HFANADE--GEVDW-QLEQFDAATAGIP 183

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIR 246
           G E S ++S+ +L  P  H    RPG  LYG +      H    P+   +T  ++II ++
Sbjct: 184 G-ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAAGHIADTPLMPAMTLTSKIIGVQ 242

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                E V YG +    R   I V A GYADGYP         H+P+   G    + G M
Sbjct: 243 TLAPDETVGYGRRFTADRPMRIGVVACGYADGYP--------RHAPT---GTPIAVDGMM 291

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 292 TRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCALARR 349


>gi|308271849|emb|CBX28457.1| Alanine racemase [uncultured Desulfobacterium sp.]
          Length = 386

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 177/397 (44%), Gaps = 44/397 (11%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++  +  +IDL A+ +N   +  + + ++R  AVVK NAYG G  ++A    + G +   
Sbjct: 2   ADNIIWAEIDLKAIAHNLSELRRIINPDSRLMAVVKANAYGHGSVEVARCALDNGAEYLG 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V  +EE + LR     A I +     P   + I   NL+  + S     F   L S  +S
Sbjct: 62  VARIEEAMLLRKNNIDAPILIFGFTQPDSYENILKYNLVQTVCS---YAFAESLSSFAIS 118

Query: 122 HPYALQV----DTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIIS-----------HL 164
               ++V    DTG  R+G+      ++  N       L ++  I S           H 
Sbjct: 119 KNQKIKVHIKIDTGMGRIGVLPDCFRNYNKNGIKPVSALAEVESIASLSGIEAEGIYTHF 178

Query: 165 ACADDPSSHVNSVQLERFRTLISH--YKGIEASL---ASSSGILLGPNYHFQLTRPGISL 219
           + AD       + Q E F   IS+   KGIE  L   A+S+ I+  P  H  + R GIS+
Sbjct: 179 SMADSYDKSFTTKQFEIFMEFISNLKLKGIEFKLKHAANSAAIIDIPKTHLDMVRAGISM 238

Query: 220 YG--GTDKINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           YG   ++++NK    +   ++ +A +  ++    G  VSYG   K T  + IA   +GYA
Sbjct: 239 YGLYPSEEVNKDRVSLLPAMSLKAIVTQVKNVSCGFNVSYGATYKTTAPTTIATVPVGYA 298

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           DGY   LS             G   + G   PI G++ MD+TM D+     ++ GD + +
Sbjct: 299 DGYSRLLSS-----------RGHMLVHGQKAPIAGRVCMDLTMLDVGSITEVKQGDEVVV 347

Query: 337 FGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           FG      + +D++A    T NY+++  I  R  + Y
Sbjct: 348 FGKQNGSCVTVDEIATLINTINYEIVTLISERVKRVY 384


>gi|288818067|ref|YP_003432415.1| alanine racemase [Hydrogenobacter thermophilus TK-6]
 gi|288787467|dbj|BAI69214.1| alanine racemase [Hydrogenobacter thermophilus TK-6]
 gi|308751668|gb|ADO45151.1| alanine racemase [Hydrogenobacter thermophilus TK-6]
          Length = 338

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 173/360 (48%), Gaps = 31/360 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
           L+ID  A++ N  ++   SG  R  AVVK +AYG+G   I P L     V  F V  VEE
Sbjct: 6   LEIDADAIRQNIKAIRDFSGK-RVIAVVKADAYGIGAVHICPILEALDEVSSFAVACVEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G++LR    +  I +L G+  G+ K + +  L PV+S    L         G+   + ++
Sbjct: 65  GIELRKAGIKKDILILGGVFKGERKALIEYALTPVVSHEAHLRAIE-----GLDIGFHVK 119

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  RLG        F  +   K   ++  +++HL+   D     + +Q+E+F+ ++ 
Sbjct: 120 YDTGMGRLG--------FFEDVLIKD-RRVKGVLTHLSSPLDKD--FSLMQIEKFKKIVK 168

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            Y  ++  L SS+GI+    +   + R G+++YG     +    ++  ++ +ARI+ ++ 
Sbjct: 169 AYSNVDIHLESSAGIVYMVPFATHV-RIGLAMYGEKPAPDYPIELKRAISIKARILSVKY 227

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
                 VSY       R   + V A GYADG    LS +           G  + K   +
Sbjct: 228 LPPSYPVSYSRTFITDRKKKVGVVAFGYADGLAKALSNV-----------GCLYWKDKPL 276

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
            ILG ITMDMTM D+ D+   +VGD +++ GP      +A  +GT  Y+++  + +R  +
Sbjct: 277 RILGNITMDMTMVDLDDT-DAQVGDEVEVVGPHQSFSHLAKLAGTIPYEIMCHLSSRIKR 335


>gi|255100756|ref|ZP_05329733.1| serine/alanine racemase [Clostridium difficile QCD-63q42]
          Length = 712

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/375 (30%), Positives = 177/375 (47%), Gaps = 35/375 (9%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL  L++N   +  A+  +    AVVK NAYG    ++A      GV+ F V +++E
Sbjct: 348 IEIDLNNLEHNVKMIQKAMPEDCELMAVVKANAYGHSAFEVATCANQIGVKAFAVATIDE 407

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ LR Y     I +L   +P + K +   NL   +  +      +K      SH   ++
Sbjct: 408 GIDLRRYGILGEILILGYTNPIRAKELHKYNLTQSVIDLNHAISLNKQKYNIKSH---IK 464

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERFRT 184
           +DTG +RLG  + +       +F  K   +  I +HL  +D   D      + Q+E F  
Sbjct: 465 IDTGMHRLGFDVNDVRSIL-KAFKLKYLDICGIFTHLCVSDSLKDEDVDFTNKQIECFYK 523

Query: 185 LISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----V 235
           LI     KG++     + SS G    PN      R GI+LYG     N +  +Q     V
Sbjct: 524 LIDFLLKKGVKIPKVHIQSSYGFFNYPNLKCNYVRIGIALYGILSSPNDTTKLQLDLRPV 583

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++++ILIRK    +   YG     +RDS+IA+ +IGYADG P  LS           
Sbjct: 584 LSLKSQVILIRKIQKDDSFGYGRVFIASRDSVIAILSIGYADGIPRNLS----------- 632

Query: 296 LGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
             GK +  I G    I+G+I MD    DITD  ++EVG+   I G D    +   +VA  
Sbjct: 633 -CGKSYVIINGCRAAIVGRICMDQLAVDITDIPNVEVGNTAIIIGRDNLSELSASEVANN 691

Query: 350 SGTTNYDLLVRIGTR 364
           S + + +LL R+G R
Sbjct: 692 SCSISNELLSRVGRR 706


>gi|298529139|ref|ZP_07016542.1| alanine racemase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510575|gb|EFI34478.1| alanine racemase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 371

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 165/350 (47%), Gaps = 34/350 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L++ I   ++++N+  ++  +  AR  AVVK +AYG G E+ A  L+ AG   F V SV
Sbjct: 1   MLKVHIQTRSIEDNFAFLSRRT-TARVMAVVKADAYGHGLEETARCLHQAGADRFGVGSV 59

Query: 66  EEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-- 122
           +EG +LR       I+ L G + P    ++    +IP I S  QL    +  SC      
Sbjct: 60  QEGARLRDCLDAPEIYSLLGPVSPEDYHLLARHRIIPFIHSREQLKALQE-ASCSFRGTI 118

Query: 123 PYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSV- 177
           P A++++TG NRLG     L E L+    ++ K  G +L ++ SHL+ AD        + 
Sbjct: 119 PVAIKLETGMNRLGFRGGDLHELLE----TWEKCRGLKLHMLASHLSLADSVQGRQEVLR 174

Query: 178 QLERF----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG-----TDKINK 228
           QL+ F    RT+ +     E SLA+S+ IL  P  H    RPGISLYG      T   +K
Sbjct: 175 QLKTFEDYCRTMQARGHEFEKSLANSAAILAHPETHLDCVRPGISLYGDNPFEHTPWASK 234

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +   +   A ++ +     G  VSYG      RD  IAV   GYAD Y   LS    
Sbjct: 235 GEGLAQAMHVRAPVLAVHHLEKGAGVSYGLCFTAPRDMRIAVIGCGYADNYSRGLSNR-- 292

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                    G    +G  +P+LG++ M +++ D + +  I  G  + + G
Sbjct: 293 ---------GWMLYQGRRMPVLGRVCMQLSVVDASHAGDIAPGCEVYVLG 333


>gi|322832740|ref|YP_004212767.1| alanine racemase [Rahnella sp. Y9602]
 gi|321167941|gb|ADW73640.1| alanine racemase [Rahnella sp. Y9602]
          Length = 357

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 175/359 (48%), Gaps = 28/359 (7%)

Query: 14  TALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           +AL  N + +   + N++   VVK N YG G  +I  +L  +    F +    E + LR 
Sbjct: 12  SALTQNLNIIRGFAPNSKVWTVVKANGYGHGISRIWRSL--SATDGFALLDFNEAILLRE 69

Query: 74  YTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQVDT 130
              Q  I +L G    ++  I D   L   + S  Q+     L    +S P +  L+V++
Sbjct: 70  SGWQGPILLLEGFFTAEDLAIVDKYRLTTAVHSEWQI---KALAQASISLPVSIYLKVNS 126

Query: 131 GFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           G NRLG + + A          K++G+++L+ SH A AD  S      Q+        + 
Sbjct: 127 GMNRLGFAPERAGAVWQQLRELKQVGEITLM-SHFATAD--SVEGVDAQMSVINLAGQNI 183

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHP-MQTVVTAEARIILI 245
           +G    LA+S+  L  P+ H    RPGI +YG +   +  + +H  +Q V+T ++ +I +
Sbjct: 184 RGPRC-LANSAATLWHPHTHHDWIRPGIIIYGASPSGEWKDIAHTGLQPVMTLKSELIAV 242

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           ++  AG  V YGG+  +TR   I V A GYADGYP         H+PS   G   ++ G 
Sbjct: 243 QELNAGARVGYGGRYSVTRPQRIGVVACGYADGYP--------RHAPS---GTPVWVDGV 291

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
                G ++MDM   D+T     ++G  ++++G ++ +DDVA A+GT  Y+LL  +  R
Sbjct: 292 RTTTTGTVSMDMLAVDLTPCPQAQMGAPVELWGNNLPVDDVATAAGTLGYELLSALAPR 350


>gi|193077741|gb|ABO12603.2| alanine racemase 1 [Acinetobacter baumannii ATCC 17978]
          Length = 356

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 173/360 (48%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 8   IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAAL-NAS-DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    +  + ++ G+    E  I  +     VI    Q  +  K     ++    + V 
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPIAIEQKFECVIHHQQQFEWLIKHKQAYITQGLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG    E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLHVKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   DK      ++ V+T  A II 
Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP         +    F+     I  
Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYP-------RAYVKQNFVA----IDS 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350


>gi|166999264|ref|ZP_02265105.1| alanine racemase [Burkholderia mallei PRL-20]
 gi|254179158|ref|ZP_04885810.1| alanine racemase [Burkholderia mallei ATCC 10399]
 gi|160694485|gb|EDP84495.1| alanine racemase [Burkholderia mallei ATCC 10399]
 gi|243064575|gb|EES46761.1| alanine racemase [Burkholderia mallei PRL-20]
          Length = 374

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 171/362 (47%), Gaps = 27/362 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  ++E V
Sbjct: 8   RIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           ++R       + +L GI    +  I D + + V  +V     +  L +   + P  +Q  
Sbjct: 66  RVRELGWTKPVLLLEGIFEAADVEIADRHRLTV--AVHGDEQFKLLTAAKTTRPIDIQLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG            +     +G+++L++ H A AD+        Q+  F    
Sbjct: 124 MNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMM-HFANADEGEI---DWQMSVFDAAT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
               G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +RI
Sbjct: 180 QGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTSRI 238

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    GE V YG      R+  I V A GYADGYP         H+P+   G    +
Sbjct: 239 IGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYP--------RHAPT---GTPIAV 287

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+ +  + 
Sbjct: 288 DGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYEPMCALA 347

Query: 363 TR 364
            R
Sbjct: 348 RR 349


>gi|308187068|ref|YP_003931199.1| alanine racemase 2, catabolic [Pantoea vagans C9-1]
 gi|308057578|gb|ADO09750.1| alanine racemase 2, catabolic [Pantoea vagans C9-1]
          Length = 356

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 182/367 (49%), Gaps = 38/367 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +   +  +R  +VVK NAYG G E++  AL  +    F + ++EE + 
Sbjct: 9   INQQALRHNLTVVRQAAPASRVWSVVKANAYGHGIERVREAL--SATDGFALLNMEEAIL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    +  I +L G   P   ++I    L   + S  Q+     L S  +S P    L+
Sbjct: 67  LREQGWKKPILLLEGFFQPEDLQLIDRYRLTTSVHSNWQI---KALASASLSAPVDIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQ-LER 181
           +++G NRLG   ++       ++ K      +G+++L+ +H A A++P   +  +Q +E+
Sbjct: 124 MNSGMNRLGFRPEQ----VSGAWQKLRALSNVGEMTLM-AHFADAENPQGLIAPLQRVEQ 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
               ++  +    SL++S+  L  P  HF   RPGI LYG +   +        ++ V+T
Sbjct: 179 AAAGLNCPR----SLSNSACTLWHPEAHFDWVRPGIILYGASPSGDWQDIAGSGLKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II +++  AG+ V YG +   +    I V A GYADGYP         H+P+   G
Sbjct: 235 LSSEIIAVQQLQAGDGVGYGYRYHASTAQRIGVVACGYADGYP--------RHAPT---G 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G M  ++G ++MDM   D+T      +G  ++++G  +K+D VA A+GT  Y+L
Sbjct: 284 TPVCVDGVMTQVVGAVSMDMITVDLTPCPQAGIGSSVELWGEQVKIDQVAKAAGTVGYEL 343

Query: 358 LVRIGTR 364
           +  +  R
Sbjct: 344 MCALAPR 350


>gi|317048429|ref|YP_004116077.1| alanine racemase [Pantoea sp. At-9b]
 gi|316950046|gb|ADU69521.1| alanine racemase [Pantoea sp. At-9b]
          Length = 356

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 178/363 (49%), Gaps = 30/363 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +   +  +R  +VVK NAYG G  ++  +L  A    F + ++EE + 
Sbjct: 9   INQQALRHNLAVVRQAAPASRIWSVVKANAYGHGIRRVWQSL--AETDGFALLNMEEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL--QV 128
           LR    +  I +L G    ++  + D   +   +SV        L    +S P  +  +V
Sbjct: 67  LREQGWKKPILLLEGFFHAEDLQLIDRYRL--TTSVHSNWQIQALAQAQLSAPIDIYVKV 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDPSSHVNSVQ-LERFRTL 185
           ++G NRLG    E ++    +      +G+++L+ +H A A++P   +  ++ +ER    
Sbjct: 125 NSGMNRLGFR-PEQVNAAWQALRGLANVGEMTLM-AHFADAENPQGIIEPMKRIERAAEG 182

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEAR 241
           ++  +    SL++S+  L  P  HF   RPGI LYG +   N     S  +  V+T  + 
Sbjct: 183 LNCPR----SLSNSAATLWHPEAHFDWVRPGIVLYGASPSGNWQDIASTGLTPVMTLTSE 238

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II I++  AG+ V YG +   +    I V A GYADGYP         H+P+   G    
Sbjct: 239 IIGIQQLQAGDGVGYGYRYHASAAQRIGVVACGYADGYP--------RHAPT---GTPVS 287

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G M   +G I+MDM M D+       +G  ++++G  +K+DDVA A+GT  Y+L+  +
Sbjct: 288 VDGVMTRTVGAISMDMIMIDLEPCPQAGIGSKVELWGEQVKIDDVAKAAGTVGYELMCAL 347

Query: 362 GTR 364
             R
Sbjct: 348 APR 350


>gi|121535443|ref|ZP_01667253.1| alanine racemase [Thermosinus carboxydivorans Nor1]
 gi|121305952|gb|EAX46884.1| alanine racemase [Thermosinus carboxydivorans Nor1]
          Length = 413

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 175/374 (46%), Gaps = 24/374 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL A+++N   +   L  + R  AVVK NAYG G   ++ A   AG     V   EE
Sbjct: 44  VQVDLGAIRHNIIQIRRRLKPSTRLTAVVKANAYGHGAIPVSRAALAAGADSLAVALPEE 103

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           GV+LR       I VL    P Q  ++ + +L   + +   L   +    C G      +
Sbjct: 104 GVELRDAGFTVPILVLGLTLPEQASVLVEYDLTATVCTEDGLKALAHAARCAGKRARVMV 163

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           + DTG  R+GL+  + L F   +      +L  + +HLA AD         QL  F  ++
Sbjct: 164 KADTGMGRIGLTSDKLLPFLTAAAAMPEIELRGLFTHLATADAADKSYARRQLAAFTAIL 223

Query: 187 SHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
                        S A+S+ ++   + HF   RPGI++YG   + ++++S  ++  +  +
Sbjct: 224 DQAAAAGILLPYISAANSATVIDIVDGHFNTVRPGIAIYGLPPSLEMHQSLDLRPAMEFK 283

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            RI+ I++  AG  VSYG      + + +A   +GYADGY   LS     +   V +GGK
Sbjct: 284 TRIVYIKEVPAGFAVSYGCTYVTPQATFLATLPVGYADGYSRHLS-----NKACVLIGGK 338

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
                   P++G+I MD T+ D+       VGD   +FG     +I + ++A  +GT NY
Sbjct: 339 ------RRPVVGRICMDQTIVDLGPVCDAAVGDEAVLFGRQGDAEITVTELAELAGTINY 392

Query: 356 DLLVRIGTRYAKFY 369
           +L+  I  R  + Y
Sbjct: 393 ELVCGISGRVPRLY 406


>gi|229829044|ref|ZP_04455113.1| hypothetical protein GCWU000342_01129 [Shuttleworthia satelles DSM
           14600]
 gi|229792207|gb|EEP28321.1| hypothetical protein GCWU000342_01129 [Shuttleworthia satelles DSM
           14600]
          Length = 387

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 177/372 (47%), Gaps = 28/372 (7%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVE 66
           + IDL A++ N  +M + +  + R  AVVK +AYG G  +IA  L  +  V  + V +V+
Sbjct: 8   MDIDLDAVRANVDAMFDRMRPDCRMMAVVKADAYGHGAREIAALLEPDQRVFGYAVATVD 67

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           E  +LR +     I +L    P +   +    + P I S    L F       G+  P  
Sbjct: 68  EAYELRRHQISKPILILGYSFPEEYPAMVRLGIRPAIFSYESALAFDRAASQAGMIAPVH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           +++DTG +R+G  + E  D +  +   +L  L +  I +H A AD+        Q + F+
Sbjct: 128 IKIDTGMSRIGFQVDEE-DLSQAARIAQLKHLRMEGIFTHFARADEKDKSHAYAQADLFQ 186

Query: 184 TLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVV 236
             I   +  G+E  +   ++S+ I+  P  +  + R GISLYG   +++++ + P+   +
Sbjct: 187 QAIDRLERAGVEFEIRHCSNSASIMELPELNMDMVRAGISLYGLWPSEEMDPNFPLSAAM 246

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + I  I+    G  +SYGG  ++   + IA   +GYADGY   LS            
Sbjct: 247 SLGSHITHIKTLGEGRCISYGGTYQVKGKAKIATIPVGYADGYARGLSNR---------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
            G   I+G   PI+G+I MD  M D++    I VG+ + + G D    I L+++   SG 
Sbjct: 297 -GYVLIQGKRAPIVGRICMDQFMVDVSAFDHIAVGEKVTLLGEDGKERISLEELGRLSGR 355

Query: 353 TNYDLLVRIGTR 364
            NY+    +G R
Sbjct: 356 FNYEFACLLGNR 367


>gi|167839235|ref|ZP_02465962.1| alanine racemase [Burkholderia thailandensis MSMB43]
          Length = 374

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 173/362 (47%), Gaps = 27/362 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+ +N   +   + ++R  +VVK NAYG G E+I PAL  AG     +  ++E V
Sbjct: 8   RIHPDAVAHNLAIVRQKAPSSRVWSVVKANAYGHGIERIYPAL--AGADGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           ++R       + +L GI    +    D   + V  +V        L S   + P  +Q  
Sbjct: 66  RVRELGWTKPVLLLEGIFDAADVETADRYRLTV--AVHGDEPLKLLTSSKTARPIDIQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG         +   +    +G+++L++ H A ADD    ++  Q+  F    
Sbjct: 124 MNSGMNRLGYRPDAFRAAWERAATAPSIGRIALMM-HFANADD--GEIDW-QMSMFDAAT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
               G E +L++S+ +L  P  H    RPG  LYG +      H    P++  +T  +RI
Sbjct: 180 DGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTVTSRI 238

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    GE V YG +    R   I V A GYADGYP         H+P+   G    +
Sbjct: 239 IGVQTLSPGETVGYGRRFAAGRAMRIGVVACGYADGYP--------RHAPT---GTPIAV 287

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+  + 
Sbjct: 288 DGVRTQVVGRVSMDMLTVDLTPCPNAGVGSTVELWGEQVRVDDVAQAAGTIGYELMCALA 347

Query: 363 TR 364
            R
Sbjct: 348 RR 349


>gi|78224104|ref|YP_385851.1| alanine racemase [Geobacter metallireducens GS-15]
 gi|123571083|sp|Q39RJ8|ALR_GEOMG RecName: Full=Alanine racemase
 gi|78195359|gb|ABB33126.1| alanine racemase [Geobacter metallireducens GS-15]
          Length = 379

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 177/381 (46%), Gaps = 36/381 (9%)

Query: 10  KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL AL++N+  +  A+       A+VK +AYG G   I+  L + GV  F V  + EG
Sbjct: 9   EIDLAALRHNFEQVQRAVPAGCGILAIVKADAYGHGFMDISRELESLGVTAFGVAFLAEG 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--- 125
           ++LR       + +L G++PGQE+     NL   + S+ Q    +++++   +  Y    
Sbjct: 69  IQLRKSGIDRPVLILGGVYPGQERKCVGFNLSTAVFSLEQ----ARVLNDTAARLYRKAK 124

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLE 180
             +++DTG  RLG++  EA  F       K  +L  IISH A A   DD     +  Q  
Sbjct: 125 IHVKIDTGMGRLGVAAAEAPAFFRELREMKSLELEGIISHFASADELDDDGRRFSDRQAA 184

Query: 181 RFRTLISHYK--GIEASLA--SSSGILLGPNYHF-QLTRPGISLYGG--TDKINKSHPMQ 233
            F   ++  +  G++      ++S    G +  F  L RPGI LYG   +        ++
Sbjct: 185 VFAQSVAEARSLGLDPRYVHIANSAAAFGMDLPFCNLVRPGIVLYGALPSGDFEGKMALR 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            ++  ++ + +++    G  +SY  +       LIA   +GYADGY   L+         
Sbjct: 245 PIMRLQSTVAMLKWVEPGTSISYARRYTAPDRRLIASVPVGYADGYSRALTNR------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVAL 348
               G+  I+G   P++G + MD  M D+T    + VGD + + G D     ++ +++A 
Sbjct: 298 ----GEVLIRGTRAPVVGTVCMDWIMIDVTSVPGVAVGDEVTLLGCDRQGHCVRAEELAS 353

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            +GT  Y++   I  R  + Y
Sbjct: 354 WAGTIPYEIFCGISKRVPRVY 374


>gi|257468004|ref|ZP_05632100.1| alanine racemase, biosynthetic [Fusobacterium ulcerans ATCC 49185]
 gi|317062290|ref|ZP_07926775.1| alanine racemase [Fusobacterium ulcerans ATCC 49185]
 gi|313687966|gb|EFS24801.1| alanine racemase [Fusobacterium ulcerans ATCC 49185]
          Length = 364

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 178/372 (47%), Gaps = 34/372 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+ID+  LK N + +  L        V+K N+YG G  + A  L   GV+ F V S+EE 
Sbjct: 5   LEIDMDNLKYNLNKIKELVQGTNVLGVIKANSYGFGAIETAKELSKNGVEIFGVASLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR    +  I +L  +   + +I  + N    ISS+ Q+ F   L S  ++    +++
Sbjct: 65  MELREGGIEEEILILGSLFNDEIEIAAEKNFQITISSMRQIEF---LESNKINAEIHIKI 121

Query: 129 DTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERF 182
           DTG  RLG + +   +A+D+      K +G    I SHL+ AD   D + +    Q+ +F
Sbjct: 122 DTGMGRLGFTPEKGKKAVDYCIEKGIKAVG----IYSHLSDADGMSDEAYNYTKEQINKF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQ--LTRPGISLYGGTDKINKSHP-MQTVVTAE 239
           + +   YK I+     +SG +L  N  F+  L R GI +YG     N+  P  + V T +
Sbjct: 178 K-IFEEYKNIKYIHILNSGGILRFNDGFKGNLVRAGICMYGMLG--NERMPGFKRVFTMK 234

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            RI+ IR       +SYG   KL      A  AIGYAD       G+  E S   +    
Sbjct: 235 TRILFIRTLEEDSYISYGRTVKLKEGETFATLAIGYAD-------GMKKEFSNKTY---- 283

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
             I+G   PI+G+I MDM M  I +S+   I +G    +   DI ++++     +T +D+
Sbjct: 284 ALIEGEKCPIVGEICMDMCMVKIPESILKKINIGTEAIVIRDDI-IEEINSVHKST-WDI 341

Query: 358 LVRIGTRYAKFY 369
           L  IG R  + Y
Sbjct: 342 LTGIGRRVYRVY 353


>gi|254442146|ref|ZP_05055622.1| alanine racemase [Verrucomicrobiae bacterium DG1235]
 gi|198256454|gb|EDY80762.1| alanine racemase [Verrucomicrobiae bacterium DG1235]
          Length = 385

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 180/379 (47%), Gaps = 33/379 (8%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL AL+ N +++ NAL    R  AVVK +AYG G  +    L  AG+  + V +V E 
Sbjct: 14  EIDLAALERNLNAIKNALPPRIRYIAVVKADAYGHGMHQTVARLMQAGIDMYGVANVAEA 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
             +R         ++ G    +E + +F+ +LIP +SSV ++ F   L     ++    +
Sbjct: 74  ATIREIGGSGWSILILGATLREEAQFLFEYDLIPTLSSVEEVRFLDDLAEKRDANLRVHI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG  RLG+  ++A +        K  +L  I +H + A+         Q  RF T I
Sbjct: 134 KVDTGMGRLGIWHEDADELFEAMRTAKRLKLDGIYTHFSHAE-TDVEFTERQRRRFMTAI 192

Query: 187 SHYKGIEAS-----LASSSGIL-LGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVT 237
           +    I  +       +S+G+        +   R G+  +G T     +    P   + +
Sbjct: 193 TRVNWINPAELLIHADNSAGLTSFSRESAYNAVRIGLLQFGITPYAQSLFAKVPTNPIFS 252

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + RI L+++  AG  VSYG   +L R+S +A+   GY DG P +LS             
Sbjct: 253 FKTRISLVKRLPAGTEVSYGRTCRLKRESRVAILCAGYGDGIPRSLS------------- 299

Query: 298 GKGF--IKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIF----GPDIKLDDVALAS 350
            KGF  I+G   P LG++TMD T+ D+TD  +S + GD   +     G +IK++  A  +
Sbjct: 300 NKGFALIQGKRCPYLGRVTMDQTIIDVTDLEVSPQAGDEACLIGFQDGGEIKVEQFARWA 359

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT ++++L  I  R  + Y
Sbjct: 360 GTISWEILCSITKRVPRIY 378


>gi|188590505|ref|YP_001920878.1| alanine racemase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500786|gb|ACD53922.1| alanine racemase [Clostridium botulinum E3 str. Alaska E43]
          Length = 386

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 174/380 (45%), Gaps = 37/380 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A+  N  ++  L+ N    AVVK + YG G   + P L   G     V  + E +
Sbjct: 11  EIDLDAIAYNMKNIKKLAQNKDVIAVVKADCYGHGALDVVPTLLENGASRLAVAVLTEAI 70

Query: 70  KLRLYTPQARIFVLYGIHPG---QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---- 122
           +LR     A I +L G  P    +E + +D     +  +V  L +  KL    +      
Sbjct: 71  ELRNNNVNAPIMIL-GYTPEYLFEEVVNYD-----IEQTVYDLEYAKKLSHLAIKFNKKA 124

Query: 123 PYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + +DTG  R+G +  ++A+      ++ K   +  I +H + +D+      + Q  +
Sbjct: 125 KIHIAIDTGMGRIGFIPNEKAIKDIKEIYDLKGIDVIGIFTHFSTSDETDKEYTNEQFNK 184

Query: 182 FRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQ 233
           F + I     +   +     ++S  I+  P  +    R GI LYG   +D+INK +  ++
Sbjct: 185 FTSFIDMLSKVGVKIPIKHISNSGAIIDLPKTYLDSVRAGIILYGYYPSDEINKDNIKLK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T +A +  +++      +SYG   K  R S+IA   IGYADGY   L+         
Sbjct: 245 PALTLKASLTRVQELDINSYISYGKTFKTERKSIIATLPIGYADGYSRLLAP-------- 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL----DDVALA 349
              G K  I G   PI+G+I MD  M D+TD  ++ VGD + I G D  L    +D+A +
Sbjct: 297 ---GAKVIINGQFAPIVGRICMDQCMIDVTDIDNVNVGDEVIILGEDDNLKLTANDLANS 353

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY++L  +  R  + Y
Sbjct: 354 MGTINYEILCMLKYRIPRVY 373


>gi|169795500|ref|YP_001713293.1| alanine racemase 1, biosynthetic [Acinetobacter baumannii AYE]
 gi|213158560|ref|YP_002319858.1| alanine racemase [Acinetobacter baumannii AB0057]
 gi|215482987|ref|YP_002325192.1| alanine racemase [Acinetobacter baumannii AB307-0294]
 gi|301345094|ref|ZP_07225835.1| alanine racemase [Acinetobacter baumannii AB056]
 gi|301510834|ref|ZP_07236071.1| alanine racemase [Acinetobacter baumannii AB058]
 gi|301595321|ref|ZP_07240329.1| alanine racemase [Acinetobacter baumannii AB059]
 gi|169148427|emb|CAM86293.1| alanine racemase 1, biosynthetic [Acinetobacter baumannii AYE]
 gi|213057720|gb|ACJ42622.1| alanine racemase [Acinetobacter baumannii AB0057]
 gi|213987304|gb|ACJ57603.1| alanine racemase [Acinetobacter baumannii AB307-0294]
          Length = 356

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 8   IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAAL-NAS-DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    +  + ++ G+    E  +  +     VI    Q  +  K     ++    + V 
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG    E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLHIKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   DK      ++ V+T  A II 
Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP         +    F+     I  
Sbjct: 243 LNHIKAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYP-------RAYVKQNFVA----IDS 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350


>gi|332850737|ref|ZP_08432984.1| alanine racemase [Acinetobacter baumannii 6013150]
 gi|332866952|ref|ZP_08437278.1| alanine racemase [Acinetobacter baumannii 6013113]
 gi|332730574|gb|EGJ61890.1| alanine racemase [Acinetobacter baumannii 6013150]
 gi|332734333|gb|EGJ65460.1| alanine racemase [Acinetobacter baumannii 6013113]
          Length = 358

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 10  IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAAL-NAS-DAFGVACLQEGLE 67

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    +  + ++ G+    E  +  +     VI    Q  +  K     ++    + V 
Sbjct: 68  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 127

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG    E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 128 LNSGMNRLGFKNPEIIEVIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLHIKE 184

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   DK      ++ V+T  A II 
Sbjct: 185 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 244

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP         +    F+     I  
Sbjct: 245 LNHIKAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYP-------RAYVKQNFVA----IDS 293

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 294 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 352


>gi|194015919|ref|ZP_03054534.1| alanine racemase [Bacillus pumilus ATCC 7061]
 gi|194012274|gb|EDW21841.1| alanine racemase [Bacillus pumilus ATCC 7061]
          Length = 393

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 185/386 (47%), Gaps = 31/386 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +N F R    +I+L+A+K+N  H  + +  + +  AVVK NAYG G  ++A A   AG
Sbjct: 1   MDTNAFYRDTWAEINLSAIKHNVSHMKDHIGQSVQLMAVVKANAYGHGDIEVARAALKAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E V LR    +A I VL  + P   K+    N+I    S+  L   +K++
Sbjct: 61  ADVLAVAFLDEAVSLRNKGIKAPILVLGAVPPEYVKVAVRYNVIMTAYSIDWLRDVTKMV 120

Query: 117 SCGVSHP--YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSH 173
              +  P  + L++D+G NRLG+   E ++      ++    QL  + +H A AD+    
Sbjct: 121 KGQMGQPIRFHLKIDSGMNRLGVKTIEQVNEVKKLVSEHSYLQLEGVFTHFATADEKDEA 180

Query: 174 VNSVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
               Q++ F+TL+   H   +    A+S+  L   +  F + R GIS+YG   +++I   
Sbjct: 181 YFDRQVDTFQTLLEPLHTDKLLVHCANSAAGLRFKDVLFNMVRFGISMYGLSPSEEIKDE 240

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++  ++   ++  ++    GE VSYG      +D+ I    +GYADG+   L+  +
Sbjct: 241 LPFKLEEAMSLHTKLAHVKHIQEGESVSYGATYTANQDTWIGTVPVGYADGWIRKLAATE 300

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                 V +GGK         I G++ MD  M ++ D L   VG+ + + G      + +
Sbjct: 301 ------VLVGGK------RRKIAGRVCMDQFMIELKDKLP--VGEPVVLIGKQGEDMVSV 346

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           D++A    T NY++   IG R  + Y
Sbjct: 347 DEIAKRLETINYEVTCSIGHRVPRVY 372


>gi|284037156|ref|YP_003387086.1| alanine racemase [Spirosoma linguale DSM 74]
 gi|283816449|gb|ADB38287.1| alanine racemase [Spirosoma linguale DSM 74]
          Length = 835

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 180/390 (46%), Gaps = 49/390 (12%)

Query: 9   LKIDLTALKNNWH------SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           L+I+L AL +N +      S N      +   +VK  AYG G  ++A  L    V    V
Sbjct: 461 LEINLDALTHNLNYYRERISRNDGPSETKIMVMVKAFAYGSGSAEVAQLLQFHRVDYLAV 520

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLM---- 116
              +EGV LR       I V+   +P  E    + +  L P I S+  L  + + +    
Sbjct: 521 AYADEGVSLRQNGVDLPIMVM---NPAPETFSTLLEYKLEPEIYSLRLLREWEEFLRSRE 577

Query: 117 -----SCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACAD 168
                +   ++P  L++DTG +RLG   +E     DF     N     ++ + SHL  AD
Sbjct: 578 HAFANTQSTTYPIHLKIDTGMHRLGFLERELTVVTDFLKRQPNL---HVATVFSHLVGAD 634

Query: 169 DPSSHVNSVQLERFRTLI--SHYKGIE------ASLASSSGILLGPNYHFQLTRPGISLY 220
           D  +  N    +++ T +  + + G E        L +S+GI+  P+Y   + R GI LY
Sbjct: 635 D--AQFNPFSRQQYETFLRCTEFLGAELGYMPTRHLLNSAGIVRFPDYKLDMVRLGIGLY 692

Query: 221 GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           G      +   +QTV T    +  I+   AGE V Y  +  L  D+ IA  AIGYADGY 
Sbjct: 693 GVEATGTEQSALQTVGTLRTIVSQIKTVGAGESVGYSRRGVLDHDARIATLAIGYADGYD 752

Query: 281 LTL-SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339
             L +G+           G  ++ G   P +G + MDMTM D+T++ S+  GD + IFGP
Sbjct: 753 RRLGNGV-----------GNVWVNGSYCPTVGSVCMDMTMIDVTNA-SVSEGDEVLIFGP 800

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++ + ++A   GT  Y++L  +  R  + +
Sbjct: 801 ELPITELARRIGTIPYEILTGVSERVKRVF 830


>gi|71907615|ref|YP_285202.1| alanine racemase region [Dechloromonas aromatica RCB]
 gi|71847236|gb|AAZ46732.1| Alanine racemase region [Dechloromonas aromatica RCB]
          Length = 370

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 172/371 (46%), Gaps = 32/371 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M ++  +R +I   A+ +N+      +  ++  AV+K NAYG G  +   AL       F
Sbjct: 1   MKTSRPIRARIAPAAILHNYRLAKRHAPQSKAWAVIKANAYGHGQWRAVDALRGE-ADGF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            +   E  V LR       I +L GI   ++ + + +  L  VI  + QL    +     
Sbjct: 60  ALLECENAVALREAGVTQPILMLEGIFSARDVRAVIEYRLTSVIHCLEQLELLVRNGRFD 119

Query: 120 VSHPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVN 175
                 L+++TG NRLG +   L  A +       ++L Q+ + +++H A AD       
Sbjct: 120 TPISVCLKLNTGMNRLGFTAATLPRAWEIL-----QQLPQVDVTLMTHFADAD--GERGV 172

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PM 232
           + QLERF  L   + G   SL +S+ IL  P  H    RPGI LYG +   ++S     +
Sbjct: 173 TWQLERFHDLAGDWAG-PVSLGNSAAILSHPKAHGDWVRPGIMLYGASPFADQSAVDLGL 231

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T E+ +I I+   AGE V YGG     R   I V A GYADGYP         H+P
Sbjct: 232 RPVMTLESAVIGIQDLAAGERVGYGGTFTADRPMRIGVVACGYADGYP--------RHAP 283

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVAL 348
           +   G    + G     +G+++MDM   D+TD     +G  + ++G  I      D+VA 
Sbjct: 284 T---GTPIAVMGRRTRTIGRVSMDMLACDLTDVPEAGIGSPVTLWGLGIAGAVPADEVAA 340

Query: 349 ASGTTNYDLLV 359
           A+GT  Y+L  
Sbjct: 341 AAGTVAYELFC 351


>gi|171319654|ref|ZP_02908747.1| alanine racemase [Burkholderia ambifaria MEX-5]
 gi|171095107|gb|EDT40115.1| alanine racemase [Burkholderia ambifaria MEX-5]
          Length = 373

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 170/357 (47%), Gaps = 27/357 (7%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R  AV+K NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTGF 132
                + +L GI    +  + D + + V     +      L++     P  +Q  +++G 
Sbjct: 71  GWDKPVLLLEGIFEPADVDLADRHRLTVTVHCDE--HLDLLIAAKPRQPLDIQLKMNSGM 128

Query: 133 NRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191
           NRLG            +     +G+++L++ H A AD+    V+  QLE+F    +   G
Sbjct: 129 NRLGYRPHAFRAAWERAAAAPSIGKITLMM-HFANADE--GEVDW-QLEQFDAATAGIPG 184

Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIRK 247
            E S ++S+ +L  P  H    RPG  LYG +      H    P+   +T  ++II ++ 
Sbjct: 185 -ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLTSKIIGVQT 243

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
               E V YG +    R   I V A GYADGYP         H+P+   G    + G M 
Sbjct: 244 LAPEETVGYGRRFTADRPMRIGVVACGYADGYP--------RHAPT---GTPIAVDGVMT 292

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+LL  +  R
Sbjct: 293 RVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELLCALARR 349


>gi|187776664|ref|ZP_02993137.1| hypothetical protein CLOSPO_00179 [Clostridium sporogenes ATCC
           15579]
 gi|187775323|gb|EDU39125.1| hypothetical protein CLOSPO_00179 [Clostridium sporogenes ATCC
           15579]
          Length = 386

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 178/382 (46%), Gaps = 41/382 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV    V  + E +
Sbjct: 11  EIDLDNLQHNLKEIKKICGNKEIIGVIKANAYGHGAMEIAPTLLANGVSRLAVAVLSEAM 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           +LR+   +  I +L         ++ D ++        + + YS   +  +S    L+  
Sbjct: 71  ELRMSGVKEPIMILGYTPWALGDMLLDNDI--------EQSVYSYNDALELSRIAVLKRK 122

Query: 128 -------VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                  VDTG  R+G L  +E+++  +        ++  + SH + AD+        Q+
Sbjct: 123 ILKIHIVVDTGMGRIGFLPTKESVENVYKISKLPNIKIEGVFSHFSSADELDKDYTLYQM 182

Query: 180 ERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHP 231
            ++   I+    K I+     +A+S+ I+   + H    R GI +YG       +  +  
Sbjct: 183 NKYNQFINKLEEKNIQVPIKHIANSAAIIDLESTHLDAVRAGIIMYGYYPSNYVLTNNTK 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +  I+ I+K  +GE +SYG   K  ++S+IA   IGYADGY   LS       
Sbjct: 243 LKPVMSLKTSIVHIKKVSSGEYISYGRTFKTEKESIIATLPIGYADGYNRLLSN------ 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL----DDVA 347
                 GK  + G + P++G++ MD  M D+T    ++VGD + I G +  +    +D+A
Sbjct: 297 -----KGKVIVNGKLAPVIGRVCMDQCMIDVTSIEDLKVGDVVTIMGEESGVSYTAEDIA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT +Y+++  +  R  + Y
Sbjct: 352 SEIGTISYEVICNVNKRVPRVY 373


>gi|83590990|ref|YP_430999.1| alanine racemase [Moorella thermoacetica ATCC 39073]
 gi|83573904|gb|ABC20456.1| alanine racemase [Moorella thermoacetica ATCC 39073]
          Length = 373

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 167/374 (44%), Gaps = 25/374 (6%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+  N  ++   L+      A+VK NAYG G   +A      GV    V ++ E 
Sbjct: 8   EIDLEAVARNVRAIKKILAPQTEIMAIVKANAYGHGAGPVARTALANGVSWLGVATLGEA 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
           + LR     A + +L    P     + + ++   + SV Q    +   +  G      L+
Sbjct: 68  LDLRREGITAPLLILGYTPPEDAGRVVEADISQTVFSVDQARALNAAAAAVGTRARLHLK 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG  RLG   +EA+       +     L  I +H A +D         QL  F+ +I+
Sbjct: 128 IDTGMGRLGFLPREAVTAARAIADLPHVTLEGIFTHFAASDAADKTYTQRQLGLFQQVIA 187

Query: 188 HY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAE 239
               +GI       A+S  I+  P  HF L R GI LYG     +   K   +  V+T +
Sbjct: 188 ELEKQGITFPWRHAANSGAIIDLPGTHFNLVRAGIILYGHYPSPEVQRKRLALTPVMTLK 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            R++L+++  AG  +SYG   +    + IA   +GYADGY   LS              +
Sbjct: 248 TRVVLVKEVPAGSYISYGCTYRTPGPARIATLPVGYADGYSRLLSNR-----------AE 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             ++G   PI+G+I MD  M D+T    + VGD + +FG      + +++VA   GT NY
Sbjct: 297 VLVRGRRAPIVGRICMDQCMIDVTAIPEVRVGDEVVLFGRQGGQTLTVEEVAAWMGTINY 356

Query: 356 DLLVRIGTRYAKFY 369
           ++L  I  R  + Y
Sbjct: 357 EILCLISKRVPRVY 370


>gi|297569634|ref|YP_003690978.1| alanine racemase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925549|gb|ADH86359.1| alanine racemase [Desulfurivibrio alkaliphilus AHT2]
          Length = 380

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 179/379 (47%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL+ N+ ++ + ++   R  AVVK +AYG G E  A A   AG   F V ++EE
Sbjct: 10  VEIDLKALRVNYEAVRSRVAPGIRIMAVVKADAYGHGLEAAAGAFAGAGADCFGVGTLEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           G++LR       + +L G  P +   + +  L PV+ +   L   S+L +  G      L
Sbjct: 70  GIRLRRAGLDGEVVLLLGFDPREAAEVVEYRLSPVVFAADGLEALSRLAADRGRQVGVHL 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ----LERF 182
           ++D G  R G++  +              +L+ ++SH   AD P +     +    L+  
Sbjct: 130 KLDAGMGRFGVAPADLTRLAAIITGLPGLRLAGMMSHFPLADVPGAETRCREQWQLLQAG 189

Query: 183 RTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
             +     G+   L   A+S+ +L  P  H  L RPGISLYG      +       +Q  
Sbjct: 190 GAVCLPPAGVARPLLHMANSAALLRFPWAHGDLVRPGISLYGYSPLPVELAAAGLALQPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  +R++ ++   AG  +SYG +      + +AV  +GYADGYP  +SG        V 
Sbjct: 250 MSLRSRVLQVKMLPAGYGISYGHRYVTPAPTRLAVLPVGYADGYPRGVSG-----RAQVL 304

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
           LGG+       VPILG I M+  M D++   +++ GD     G      I  D++A   G
Sbjct: 305 LGGR------RVPILGTICMNACMADVSALPAVQAGDEAVFLGRQGEEFIGADELADWHG 358

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T +Y+LL RIG    + YT
Sbjct: 359 TISYELLCRIGAMNQRLYT 377


>gi|212550479|ref|YP_002308796.1| alanine racemase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548717|dbj|BAG83385.1| alanine racemase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 383

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 178/385 (46%), Gaps = 29/385 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +++  L+++L A+ +N++   +L   + +   +VK N YG+G  +++  L N G     V
Sbjct: 8   DDYTILEVNLKAIIDNFNYFRSLLKRDTKIICMVKANGYGIGSYELSKTLQNNGADILAV 67

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI--SSVPQLTFYSKLMSCGV 120
              +EGV LR       I V+        KI F  NL P I   ++   T         +
Sbjct: 68  ALADEGVYLRKKGIHLPILVMNTEKYSLNKI-FQYNLHPCIYNQNILDATIVETKKQDIL 126

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQL 179
            +P  L++DTG +R G + +E  D      N+    +  I SHLA   DP   +  + Q+
Sbjct: 127 HYPIHLKIDTGMHRFGFNPEEIPDVAKILKNQNNVFVQSIFSHLAATADPFLDYFTNQQI 186

Query: 180 ERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKS 229
           + F  L    + +     +  + +S+GI   P+  F + R GI LYG      +  + K 
Sbjct: 187 KLFIYLSKQLEQLLGYQCQRHILNSAGIERFPDAQFDMVRLGIGLYGISVCTFSHTMGKD 246

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++ V   + RI+ IR+   GE V Y     L RDS +A   +GYADG    L    
Sbjct: 247 RPYGVKPVAVLKTRILQIREIKKGETVGYNRNGILDRDSFVACLPVGYADGLNRHLGN-- 304

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDD 345
                 VF+G      G++ PI+G I MD  + DITD  + ++  GD ++IFG  I ++ 
Sbjct: 305 --RCCQVFIG------GHLCPIIGNICMDSCIIDITDITNKKIVEGDEVEIFGKHITINF 356

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +A    T  Y++L  I  R  + Y 
Sbjct: 357 LAKKLQTIPYEILTSISQRVKRVYV 381


>gi|119485491|ref|ZP_01619819.1| alanine racemase [Lyngbya sp. PCC 8106]
 gi|119457247|gb|EAW38373.1| alanine racemase [Lyngbya sp. PCC 8106]
          Length = 404

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 178/384 (46%), Gaps = 37/384 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+L A+  N   +  L S      AVVK +AYG G   +A  +  AG   F V +  E
Sbjct: 32  VEINLAAIAYNVEQIKTLLSPQTTLMAVVKADAYGHGAVSVAKTVSQAGAGAFAVATTPE 91

Query: 68  GVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR    +  I VL   + P + K I    L P + +  Q   +S+++S    +    
Sbjct: 92  GIELREAGIKQPILVLGAAYTPDEVKAISHWQLQPTLCTPQQALLFSEILSQLNQTLEVH 151

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           L +DTG +RLG S Q A++F      ++L  L +  I SH A AD P   +   Q +RF+
Sbjct: 152 LNIDTGMSRLGTSWQHAVEFVQ--LVQRLPNLKIAGIYSHFATADSPDQTLMRQQHQRFQ 209

Query: 184 TLISH-----YKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
            +I         G+           +++S+  L     H+ L R G+++YG      +  
Sbjct: 210 DVIKKIGVNPQNGLTKETVSRPCLHISNSAATLTDSALHYDLVRVGLAIYGLYPAPHLAA 269

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++  +  +A++  I+   AG  VSYG Q    + + +AV  IGYADG P  LS    
Sbjct: 270 TIDLKPAMQVKAKVTQIKMIEAGTGVSYGYQYVAEKITRVAVVGIGYADGIPRNLSN--- 326

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                     K  ++G ++P +G ITMD  M D+T    ++VG+ + + G +    I  +
Sbjct: 327 --------KMKVLVRGQLLPQIGAITMDQLMIDVTSMPDLQVGEVVTVLGQEGENTISAE 378

Query: 345 DVALASGTTNYDLLVRIGTRYAKF 368
           D A    T ++++L     R  + 
Sbjct: 379 DWAADLDTISWEILCGFKHRLPRL 402


>gi|34497370|ref|NP_901585.1| alanine racemase [Chromobacterium violaceum ATCC 12472]
 gi|34103226|gb|AAQ59589.1| alanine racemase [Chromobacterium violaceum ATCC 12472]
          Length = 356

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 176/366 (48%), Gaps = 28/366 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEGV 69
           I L  L++N+    A  G+ R  AV+K NAYG G  + A AL  A + D F V  +EE +
Sbjct: 8   IRLDHLRHNYLQARAAHGD-RALAVLKANAYGHGAVRCAQAL--ADIADGFAVACLEEAL 64

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--AL 126
           +LR       I +L G+   +E K + +  L   ++S  QL+   +      S P+   L
Sbjct: 65  ELRAAGIANPILLLEGVFDAEELKAVDEHGLWMAVTSEEQLSMVEQ---SNPSRPFNVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +D+G +R G   +      H    + K G ++ + +H A AD+P   +   QLE F   
Sbjct: 122 MLDSGMHREGFLPENYHQAWHRLQASGKAGGITKM-THFARADEPEIPMTFAQLEAFDAA 180

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARI 242
           +      + S+A+S+GIL  P       R GI+LYG T       +   ++ V+   +++
Sbjct: 181 VRGLPAGDESVANSAGILCHPRAQRNWGRVGIALYGVTPLPAGFGQGDALRPVMRFSSKV 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             +R+   GE + YG      R + + + A GYADGYP   S            G    +
Sbjct: 241 FGVRELGVGEPIGYGDNFVTERPTRVGLVACGYADGYPRRASS-----------GSPALV 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+++MDM   D+TD  ++ VG  ++++G  + +++VA  +GT  Y+ L  + 
Sbjct: 290 DGQRTRLIGRVSMDMLTVDLTDLPAVGVGSEVELWGDGVSVNEVAAHAGTIGYEPLCNV- 348

Query: 363 TRYAKF 368
            + A+F
Sbjct: 349 -KRARF 353


>gi|254422201|ref|ZP_05035919.1| alanine racemase [Synechococcus sp. PCC 7335]
 gi|196189690|gb|EDX84654.1| alanine racemase [Synechococcus sp. PCC 7335]
          Length = 399

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 175/370 (47%), Gaps = 35/370 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+LTAL +N   + A L       +VVK +AYG G   +A     AG     V +V E
Sbjct: 20  VEINLTALAHNVKVLKAMLPKGTDLLSVVKADAYGHGAVMVADVAIAAGTTWLGVATVPE 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           G++LR       I V+  ++   E + I   NL PVI +  Q L F   L          
Sbjct: 80  GIELRQAGIDVPILVMGAVNDSAEVRAIAHWNLQPVIVNPKQALVFSETLKDQRTPVQVH 139

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFR 183
           +Q+DTG +RLG S Q A++F    F ++L  L  +   SH A AD     V  +Q +RF+
Sbjct: 140 IQLDTGMSRLGFSWQRAVEFVR--FVRQLPYLETVGLCSHFATADSLDQTVMRLQHDRFK 197

Query: 184 TLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGG------TDKINKSHPM 232
             I+  K      +   +A+S+  L+ P +H+ + R G++ YG        DK+     +
Sbjct: 198 QAIARLKQESLLPVRLHIANSAAALIAPTFHYDMVRMGLATYGLYPAPHLRDKLKVE--L 255

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q V+  +ARI  I++  A   VSY  Q    +   IA+  IGYADG P  LS        
Sbjct: 256 QPVLELKARITHIKEIDAHTGVSYSYQFIAPKSMKIAIVGIGYADGVPRILSN------- 308

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  +    V  +G ITMD  + D++D  S++ GD + + G      +  D+ A 
Sbjct: 309 ----KMQVVVNEQRVNQIGAITMDQLIIDVSDLESVQEGDIVTLLGRTQYHCLHADEWAE 364

Query: 349 ASGTTNYDLL 358
            +GT ++++L
Sbjct: 365 LAGTISWEIL 374


>gi|220930291|ref|YP_002507200.1| alanine racemase [Clostridium cellulolyticum H10]
 gi|220000619|gb|ACL77220.1| alanine racemase [Clostridium cellulolyticum H10]
          Length = 389

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 181/383 (47%), Gaps = 39/383 (10%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I L  + +N   +  ++G NA    VVK +AYG G  ++A  L   G   F V+ ++E 
Sbjct: 11  EISLDNIAHNIREIRKITGKNAEIMGVVKADAYGHGVMEVAKTLLENGASRFAVSMLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR    +  I +L    P +   I + ++   V S         + +  G      ++
Sbjct: 71  IQLRRAGIEVPILILGYTDPIRANEIIENDVTQSVFSHDLAQALSDEAVRQGKKVKIHIK 130

Query: 128 VDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
           +DTG +R+G      +++  +D +       L  + +  + +H A AD+ +      Q E
Sbjct: 131 IDTGMSRIGFLPGYSAVKNVVDIS------TLPNIIIEGLFTHFATADEKNRDYTYTQFE 184

Query: 181 RFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PM 232
           RF ++    + I   +     A+S+ ++  P  H  + RPGI LYG   + +++KS   +
Sbjct: 185 RFMSICCELQRIGIHIPVKHCANSAAVIEYPEMHLDMVRPGIILYGMYPSSEVDKSKIDL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T +A +I++++      +SYG      R S IA   IGYADG+   LS        
Sbjct: 245 KPAMTLKANVIMVKEVEKNTSISYGRIFTTNRTSKIATIPIGYADGFTRMLSN------- 297

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGP----DIKLDDVA 347
                GK  I G + P++G+I MD  M D+T   S +EVGD + + G     +I ++DVA
Sbjct: 298 ----KGKVLIHGELAPVVGRICMDQCMVDVTHIGSKVEVGDEVVLIGSQGQNNIMVEDVA 353

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
              G  NY+L+  +G R  + + 
Sbjct: 354 QTIGMINYELVCIVGKRIPRAFV 376


>gi|238025116|ref|YP_002909348.1| alanine racemase [Burkholderia glumae BGR1]
 gi|237879781|gb|ACR32113.1| Alanine racemase [Burkholderia glumae BGR1]
          Length = 375

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 171/363 (47%), Gaps = 29/363 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+++N   +   +   R  AVVK NAYG G E+I PAL +A      +  ++E V
Sbjct: 8   QIRPAAVRHNLAIIRRKAAGTRIWAVVKANAYGHGIERIYPALADA--DGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ- 127
           ++R       + +L G+    +  + D   L   +    QL     L S   S P  +Q 
Sbjct: 66  RVRELGWTRPVLLLEGLFDASDVAVADRYRLTVAVHGEEQLDM---LASARPSRPIDIQL 122

Query: 128 -VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +++G NRLG         +   S    +G+++L+ +H A AD+      + Q ++F   
Sbjct: 123 KMNSGMNRLGFRPSAFRAAWERASATPAVGRIALM-THFANADEGEV---AWQTQQFDAA 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEAR 241
                G E SL++S+ +L  P+ H    RPG  LYG +      H   T     +T  +R
Sbjct: 179 TEGLPG-ERSLSNSAAVLWHPDAHRDWVRPGTILYGASPTGATRHIADTGLVPAMTLTSR 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I ++     E V YG +    R   I V A GYADGYP         H+ +   G    
Sbjct: 238 LIGVQTIEENETVGYGRRFAAKRTMRIGVVACGYADGYP--------RHAQT---GTPIA 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +  ++G+++MDM   D+T   +  VG  ++++G  +++DDVA ASGT  Y+L+  I
Sbjct: 287 VDGIVTRVVGRVSMDMLTVDLTPCPNARVGSSVELWGEQVRVDDVAEASGTIGYELMCAI 346

Query: 362 GTR 364
             R
Sbjct: 347 ARR 349


>gi|226356276|ref|YP_002786016.1| alanine racemase [Deinococcus deserti VCD115]
 gi|259710064|sp|C1CVP5|ALR_DEIDV RecName: Full=Alanine racemase
 gi|226318266|gb|ACO46262.1| putative Alanine racemase [Deinococcus deserti VCD115]
          Length = 355

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 169/364 (46%), Gaps = 31/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA-PALYNAGVQDFFVTSVEEGV 69
           I   AL +N   ++A +G  R    VK NAYG G E IA  A  +  V    V +  E  
Sbjct: 12  ISEAALHHNLSGLSARAGT-RLLLPVKANAYGHGLELIARQAAAHPDVWGLAVATPREAQ 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPYAL 126
            + L      + +L    P +   + D  +   +SS+ +   L  +++      +H   L
Sbjct: 71  AVALLNLGRPVVLLTPPTPDEVVPLADLGVRLPVSSLEEAEALPVHAR------AH---L 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG NRLG    EA+        +  G L    +H A  D+        QL RFR++I
Sbjct: 122 KVDTGMNRLGARPDEAIRIGQRLAER--GVLEGAYTHFATTDEEDLSFAHEQLRRFRSVI 179

Query: 187 SHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYG-GTDKINKSHPMQTVVTAEARIIL 244
           +    + A  A+  GIL LG      L+RPG++ YG     + +  P+  V+T  A +  
Sbjct: 180 AALPPVLAHCANGGGILSLGHLGDMGLSRPGLASYGFAPAHLQRVVPLTPVMTLRATVTQ 239

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           + KA AGE VSYGG  +  RD+ +A    GYADGYP   +           L     ++G
Sbjct: 240 VHKAFAGESVSYGGLWQAPRDTTLATIGFGYADGYPRNAT-----------LRAHVLVRG 288

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIGT 363
              P++G+I MD  M D+T  L +  GD ++ +G  D+ + +VA    T  Y++L  +G 
Sbjct: 289 ERRPVVGRICMDQCMVDVT-GLEVRAGDQVECWGSGDLTVSEVAGWGDTIEYEVLTGLGE 347

Query: 364 RYAK 367
           R  +
Sbjct: 348 RVER 351


>gi|167013239|pdb|2ODO|A Chain A, Crystal Structure Of Pseudomonas Fluorescens Alanine
           Racemase
 gi|167013240|pdb|2ODO|B Chain B, Crystal Structure Of Pseudomonas Fluorescens Alanine
           Racemase
 gi|167013241|pdb|2ODO|C Chain C, Crystal Structure Of Pseudomonas Fluorescens Alanine
           Racemase
 gi|167013242|pdb|2ODO|D Chain D, Crystal Structure Of Pseudomonas Fluorescens Alanine
           Racemase
          Length = 357

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 179/368 (48%), Gaps = 22/368 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     ++G A+  AV+  +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYQLAREVTG-AKALAVIXADAYGHGAVRCAQAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A I +L G     E  +I + +   V+ S+ QL    +       H + L
Sbjct: 63  ALELRAAGIRAPILLLEGFFEADELPLIVEHDFWCVVHSLWQLDAIEQARLAKPIHVW-L 121

Query: 127 QVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            +D+G +R+GL   +    +     +  + ++ +++SH A AD+     +  Q+  F   
Sbjct: 122 XLDSGMHRVGLHPNDYKAAYQRLQASANVAKI-VLMSHFARADELDCTRSVEQVAVFLGA 180

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARI 242
            +     E SL +S  +L  P       RPG+ LYG +   +    +  +Q V+T E+++
Sbjct: 181 RADLTA-EISLRNSPAVLGWPRVPSDWVRPGLMLYGSSPFDEPQATASRLQPVMTLESKV 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YG +    +   I V A+GYADGYP          +P+   G   F+
Sbjct: 240 ICVRELPAGEPVGYGARFITPKPMRIGVVAMGYADGYP--------RQAPT---GTPVFV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    +LG+++MDM   D+TD     +G  ++++G +I   +VA A+ T  Y +   + 
Sbjct: 289 DGVRSQLLGRVSMDMLCIDLTDVPQAGLGSTVELWGKNILASEVATAADTIPYQIFCNL- 347

Query: 363 TRYAKFYT 370
            R  + Y+
Sbjct: 348 KRVPRLYS 355


>gi|37526452|ref|NP_929796.1| alanine racemase, catabolic [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785883|emb|CAE14934.1| Alanine racemase, catabolic [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 362

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 168/362 (46%), Gaps = 25/362 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L AL+NN   +    GN++  AVVK NAYG G   I  +L  A    F +    E + 
Sbjct: 9   IHLDALENNLAIIRNKVGNSKIWAVVKANAYGHGLHCIWRSLDQA--DGFALLDFHEAIL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    Q  I +L G   P    II +  L  V+ S  QL     + +  +S P    L+
Sbjct: 67  LREQGWQGAILLLEGFFKPEDLPIIDEYQLTTVVHSHWQL---EAIEAANLSKPINIYLK 123

Query: 128 VDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG    Q +   +     +++GQ++L+ SH A AD  +  ++  +       +
Sbjct: 124 LNSGMNRLGFPADQYSAVLSLARGIRQIGQITLM-SHFANADKDNKEISVTEQLNVIHSV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
           S    I   LA+S+  L  P  H    RPGI LYG    G  K      ++ V++ ++ I
Sbjct: 183 SQGLDISQCLANSAASLWYPQTHRDWVRPGIVLYGASPSGKWKDIADIGLKAVMSLQSEI 242

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I I+   AG+ + YG +        +   A GYADGYP                G    +
Sbjct: 243 IAIQNLKAGDKIGYGSEYTAPGPMRVGTVACGYADGYPRC-----------AMTGTPIIV 291

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    +LG ++MDM   D+T     ++G  ++++G ++ +DDVA +SGT  Y+LL  + 
Sbjct: 292 DGVRTQVLGTVSMDMLSVDLTPCPQAQIGSPVELWGQNLPVDDVAESSGTIGYELLCALA 351

Query: 363 TR 364
            R
Sbjct: 352 NR 353


>gi|120603074|ref|YP_967474.1| alanine racemase [Desulfovibrio vulgaris DP4]
 gi|254802362|sp|A1VF31|ALR_DESVV RecName: Full=Alanine racemase
 gi|120563303|gb|ABM29047.1| alanine racemase [Desulfovibrio vulgaris DP4]
          Length = 376

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 28/367 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L ++  N+  +  ++   R   V+K +AYG G E +  AL   G ++  V +V EG K
Sbjct: 12  VSLQSIIANYRRIRTVA--QRPMPVIKSDAYGHGLEAVGMALEAEGARECAVGTVGEGAK 69

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR     A I  L G    ++ ++   + +IP +  +  L   +   +       AL+ D
Sbjct: 70  LRKAGFGADIVALLGALDREDAQLAASSGIIPTVLDIAGLERLAAQGTTERPVRVALKFD 129

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLI-- 186
           TG  RLG +  +              +  + +SHLA ADDP+ S     Q   F  ++  
Sbjct: 130 TGMARLGFTEHDVSALCERLRTLPSVRPVMAVSHLAVADDPTQSAFTMAQGAAFARIMAG 189

Query: 187 --SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQTVVTAE 239
             S++  I  SL++S+  L  P  H+ + RPGI+LYG     GT        +   ++  
Sbjct: 190 LRSNFPDIMGSLSNSAATLAHPQLHWDVQRPGIALYGSNPLRGTALARHGEGLLPAMSVS 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             ++ +    AG  +SYG     T+D+ +A+ A GYAD Y   LSG            G 
Sbjct: 250 VPVLQVHPLPAGRSISYGRTYTATKDATVAIIAAGYADNYSRALSGR-----------GV 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
               G  VP+LG++ M  T  D+TD   I  GD + + G      +  D++A   GT +Y
Sbjct: 299 AVAGGRRVPVLGRVCMQTTAIDVTDVPGIATGDRVWLLGGPGPATVSADELADLWGTISY 358

Query: 356 DLLVRIG 362
           ++L  +G
Sbjct: 359 EVLCLLG 365


>gi|309388300|gb|ADO76180.1| alanine racemase [Halanaerobium praevalens DSM 2228]
          Length = 377

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 175/374 (46%), Gaps = 24/374 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I + AL  N+  + + L+   + AAVVK +AYG G  KIA  L   G +   V S EE
Sbjct: 11  LEIKMKALAKNYKFIRSKLNKKTKIAAVVKADAYGHGAVKIAKKLVCLGTEYLCVGSPEE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           G++LR    +  I VL  + P Q + I   +LI   +S   L   +K  +         L
Sbjct: 71  GIELRNAGLEVPILVLAEVLPAQYQSILAGDLIQTAASRETLFALNKFAAKNNKKIKIHL 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           + DTG  R+G   +E  +    + +    +L  I SHLA AD+     ++ QL RF   +
Sbjct: 131 KCDTGMGRIGFLPEELFEVYKLALSLDNLKLEGIFSHLARADETEKEFSNKQLARFDCAL 190

Query: 187 -----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
                S++K     +A+S+ ++     +  L RPGI LYG   + ++ +   ++ ++  +
Sbjct: 191 NKIKKSNFKLPLIHIANSAAVIDLKATYLDLVRPGIILYGLLPSAELKEESFLEPILEFK 250

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            +I+ +R+      +SYG   K      +AV  IGY DGYP  LS             G+
Sbjct: 251 TKIVQLRELPPASTISYGSTYKTEASEKLAVLPIGYKDGYPRLLSN-----------QGE 299

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
             I+G   PI GK+ M  T+  + +  +  +GD + + G     +I   ++A  + T +Y
Sbjct: 300 VLIRGQRAPIRGKVCMGQTIVSVEEIENAAIGDEVVLIGKQGTAEITAAEIAKLASTISY 359

Query: 356 DLLVRIGTRYAKFY 369
           +++  +     K Y
Sbjct: 360 EIVCNLDRNLKKIY 373


>gi|196232506|ref|ZP_03131358.1| alanine racemase [Chthoniobacter flavus Ellin428]
 gi|196223268|gb|EDY17786.1| alanine racemase [Chthoniobacter flavus Ellin428]
          Length = 335

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 162/345 (46%), Gaps = 22/345 (6%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK NAYG G   +A AL     + F V +V E  +LR + P A IF+L    P +   
Sbjct: 2   AVVKANAYGHGLGPVAKALVGH-AEMFGVATVGEAEELRSHVPDAPIFILGPALPDERLP 60

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
           +     IP IS+V +   Y+ L       P  L +DTG  R+G+   +A+       + +
Sbjct: 61  VVTGCFIPAISTVEEARAYAALTGAK-PLPVHLLIDTGMGRVGILQDDAVATAREILSLR 119

Query: 154 LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEAS-----LASSSGILLGPNY 208
              ++ + SHL  AD+  +     QL +F  ++   + +  S     + +S+GI+  P  
Sbjct: 120 GLTVTGLASHLPVADEDDAFTRE-QLAQFHQVVGQLRSLGISQPVVHVENSAGIISYPTQ 178

Query: 209 HFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
              + R G+ +YG +        ++ V+T + R+ L+R+  AG  +SYG      R   I
Sbjct: 179 AGDMVRAGLMIYGSSPVPEFQPKLRAVMTWKTRVTLVREMPAGHGISYGRTFITPRPMRI 238

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
           A   +GYADGY   L    S  S  V +GG+        P+LG++TMD  + D++    +
Sbjct: 239 ATLGVGYADGYQRHL----SNRSADVLIGGQ------RCPVLGRVTMDQILADVSALPQV 288

Query: 329 EVGDYIQIF----GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD   +     G +I   ++A  SGT  +++   +G R  + Y
Sbjct: 289 TAGDEAVLIGSQGGEEISAAELAQKSGTIPWEIFTGVGRRVERAY 333


>gi|238785910|ref|ZP_04629876.1| Alanine racemase, catabolic [Yersinia bercovieri ATCC 43970]
 gi|238713179|gb|EEQ05225.1| Alanine racemase, catabolic [Yersinia bercovieri ATCC 43970]
          Length = 373

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 174/364 (47%), Gaps = 32/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L+AL +N   +    G+A+  +VVK NAYG G  +I   L  A    F +  + E + 
Sbjct: 25  LHLSALHHNLSLIRRHVGSAKIWSVVKANAYGHGLARIWQGL--AATDGFALLDLNEAIL 82

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    Q  I +L G    Q+  + D   L  ++ S  QL     + +  +S P    L+
Sbjct: 83  LREQGWQGPILLLEGFFQPQDLALLDHYRLTTIVHSDWQL---EAINAARLSAPLNIYLK 139

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNS-VQLERFRT 184
           +++G NRLG  + +A D      N    + +++L+ SH A AD+   H+ +  Q  R + 
Sbjct: 140 LNSGMNRLGFPVGQA-DAVWQWANSLSNVAEVTLM-SHFANADN---HIGTHEQFSRIQQ 194

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240
              H        A+S+ IL  P  H+   RPGI LYG +   N +      ++ V+   +
Sbjct: 195 ASGHISATRC-FANSAAILHAPETHYDWVRPGIILYGASPSGNIADIAEIGLRPVMHLHS 253

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II ++   AG  V YG + + T    I V A GYADGYP          +PS   G   
Sbjct: 254 EIIAVQALSAGHQVGYGSRYRATGAQRIGVVACGYADGYP--------RLAPS---GTPI 302

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G +   +G I+MDM   D+T     +VG  ++I+G ++ +D+VA A+GT  Y+L+  
Sbjct: 303 RVDGILTQTVGAISMDMLTVDLTPCPQAQVGSQVEIWGANLPIDNVAAAAGTVGYELMCA 362

Query: 361 IGTR 364
           +  R
Sbjct: 363 LAAR 366


>gi|238794498|ref|ZP_04638107.1| Alanine racemase, catabolic [Yersinia intermedia ATCC 29909]
 gi|238726181|gb|EEQ17726.1| Alanine racemase, catabolic [Yersinia intermedia ATCC 29909]
          Length = 358

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 172/362 (47%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L+AL +N   +   +G A+  +VVK NAYG G  +I  AL       F +  + E + 
Sbjct: 9   LHLSALSHNLSIVRRHAGAAKIWSVVKANAYGHGLARIWQAL--DATDGFALLDLNEAIM 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    Q  I +L G    Q+  + D   L  V+ S  QL   +        + Y L+++
Sbjct: 67  LREQGWQGPILLLEGFFRTQDLALVDHYRLTTVVHSDWQLDAINAARLTAPPNIY-LKLN 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVN-SVQLERFRTLI 186
           +G NRLG  + +A D      N    +G+++L+ SH A AD+   H+  S Q  R +   
Sbjct: 126 SGMNRLGFPIGQA-DAVWQWANSISNIGEVTLM-SHFANADN---HMGASEQFTRIQQAS 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
            H        A+S+ IL  P  H+   RPGI LYG +   + +      ++ V+   + I
Sbjct: 181 GHIAAARC-FANSAAILRNPETHYDWVRPGIILYGASPSGDVNDIAGIGLRPVMGLHSEI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I  +   AG  V YG +   T    I V A GYADGYP          +PS   G    +
Sbjct: 240 IATQMLSAGHSVGYGSRYSATGTQRIGVVACGYADGYP--------RLAPS---GTPIRV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G +   +G I+MDM   D+T     +VG  ++I+G ++ +DDVA A+GT  Y+L+  + 
Sbjct: 289 DGILTHTVGSISMDMLTVDLTPCPQAQVGSKVEIWGDNLPIDDVAAAAGTVGYELMCALA 348

Query: 363 TR 364
           +R
Sbjct: 349 SR 350


>gi|226310176|ref|YP_002770070.1| amino acid racemase [Brevibacillus brevis NBRC 100599]
 gi|226093124|dbj|BAH41566.1| probable amino acid racemase [Brevibacillus brevis NBRC 100599]
          Length = 574

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 175/379 (46%), Gaps = 37/379 (9%)

Query: 11  IDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L++N   +   L  +    AVVK  AYG G  +IA  L   G+  F V +++EG+
Sbjct: 211 IHLPHLQHNVREIQQVLPKDCAMMAVVKAQAYGHGGWQIARFLNKLGIDHFAVATIDEGI 270

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR    +  I VL       E+ I       +  +V    +   L    V  P  +++D
Sbjct: 271 ELRKKGVKGEILVL---GYTDERRIRQIARFKLTQTVVDDEYAQTLNGYNVKIPVHIKID 327

Query: 130 TGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFR 183
           TG  RLG    E+ ++T      +  K  Q+    +HL+ AD   +        Q++RF+
Sbjct: 328 TGMGRLG----ESWEYTEKIAAMYRYKHLQVCGTFTHLSVADSLEASDIAYTKNQIDRFQ 383

Query: 184 TLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQT 234
            +I   K  GI      + SS G+L      +   R GI+LYG      DK+  S  ++ 
Sbjct: 384 NVIEQLKEKGINPQKLHVQSSYGVLNYGELQYDYARMGIALYGMLSKQGDKVKTSIDLRP 443

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +AR++ +++   G  V YG      +DS IA+ +IGYADG P  LS          
Sbjct: 444 VLSLKARVVQVKQVEKGAPVGYGRAHTAQKDSKIAIVSIGYADGVPRMLSQ--------- 494

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
            +G    I+G   PI+G + MD  + DI+D   ++ G+ +   G D    I  +++A + 
Sbjct: 495 -VGATCLIRGKRRPIIGFVCMDQLIVDISDIEEVQRGEVVTFIGRDQEEEITAEEMAQSC 553

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T   +L+ R+G R  + Y
Sbjct: 554 KTITNELVSRLGERVKRVY 572


>gi|87124994|ref|ZP_01080841.1| putative Alanine racemase [Synechococcus sp. RS9917]
 gi|86167314|gb|EAQ68574.1| putative Alanine racemase [Synechococcus sp. RS9917]
          Length = 390

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 159/343 (46%), Gaps = 22/343 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++   A+ +N  S+ +L        AVVK + YG G   +A A    G     V +++E
Sbjct: 25  LEVAPAAISHNARSIRSLLRPGCALMAVVKADGYGHGAVTVARAALAGGATQLGVATLQE 84

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G++LR    +  + V+  +    + +      L+P +S + +      L S  G      
Sbjct: 85  GIELRQAGLREPVLVMGNLTQADDLRRCLHWQLMPTLSGMREALLCQNLASDSGRRFDVQ 144

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPS---SHVNSVQLER 181
           L++DTG  RLG   QEA             +L  I SHLA AD DP+     V   Q +R
Sbjct: 145 LKLDTGMTRLGCDWQEAPRLVDAIQQLDRIRLEGIYSHLALADGDPNGDGERVTQQQHQR 204

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVT 237
           FR  +      +A   LA+S+G L  P  H  L R G++LYG +   +  H   ++  +T
Sbjct: 205 FREALRLLPEGDAVHHLANSAGTLRDPELHHDLVRVGLALYGHSPSPHLDHAVALEPAMT 264

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             AR+ LIR+  AG  VSYG +    R S +AV AIGYADG    LSG            
Sbjct: 265 VRARVSLIRQVGAGVGVSYGHRFITARPSRLAVVAIGYADGVSRALSGRIC--------- 315

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                +G  +P +G ITMD  + D+TD  ++E G  + + G D
Sbjct: 316 --ALHQGRRLPQVGAITMDQLILDVTDHPNLEPGAVVTLLGRD 356


>gi|238754895|ref|ZP_04616245.1| Alanine racemase, catabolic [Yersinia ruckeri ATCC 29473]
 gi|238706906|gb|EEP99273.1| Alanine racemase, catabolic [Yersinia ruckeri ATCC 29473]
          Length = 357

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 177/364 (48%), Gaps = 32/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L+A  +N + +  L+ +A+  +VVK NAYG G  +I  +L  A    F +  + E V 
Sbjct: 9   LHLSAFTHNLNLVRGLAPDAKVWSVVKANAYGHGLARIWRSL--ATTDGFALLDLNEAVL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    Q  I +L G    Q+ ++ D   L  V+ S  QL    +       + Y L+++
Sbjct: 67  LREQGWQGPILLLEGFFQPQDLVLLDHYRLTTVVHSDWQLEAIQRARLTAPLNVY-LKIN 125

Query: 130 TGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +G NRLG  + +  A+     S    +GQ++L+ SH A AD+P+        ++F  ++ 
Sbjct: 126 SGMNRLGFPVGQTHAVWLWAKSL-ANIGQITLM-SHFANADNPTGVT-----QQFDHIVH 178

Query: 188 HYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK-----INKSHPMQTVVTAEA 240
               I A  S A+S+  L     H    RPGI LYG +       I  S  +Q  ++  +
Sbjct: 179 ASAKIAAPRSFANSAATLWHSRTHADWIRPGIILYGASPSGKVADIADSG-LQPTMSLHS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I+ I+    G  V YG +   +    I + A GYADGYP         H+P+   G   
Sbjct: 238 KILAIQDLSKGHSVGYGSRYLASDAQRIGIVACGYADGYP--------RHAPT---GTPI 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +   LG I+MDM M D+T      +G  ++++G ++ +D+VA  +GT  Y+L+  
Sbjct: 287 WVDGVLTRTLGTISMDMLMLDLTSCPQAMIGSQVELWGKNLPIDEVAATAGTVGYELMCA 346

Query: 361 IGTR 364
           + +R
Sbjct: 347 LASR 350


>gi|170696497|ref|ZP_02887622.1| alanine racemase [Burkholderia graminis C4D1M]
 gi|170138600|gb|EDT06803.1| alanine racemase [Burkholderia graminis C4D1M]
          Length = 356

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 168/366 (45%), Gaps = 28/366 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L   I  +AL NN       +  ++  AVVK NAYG G  +  P L       F +  +E
Sbjct: 5   LSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARAFPGLR--ATDGFGLLDLE 62

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E VKLR       I +L G   P    +I   +L   + S  QL     L    +S P  
Sbjct: 63  EAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRM---LEMARLSKPVN 119

Query: 126 LQ--VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +Q  +++G NRLG + ++    +      + +GQ++L+ +H + AD  S    + Q+E F
Sbjct: 120 IQLKMNSGMNRLGYTPEKFRAAWERARACQGVGQITLM-THFSDAD--SERGVAHQMEAF 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTA 238
                   G   SLA+S+  L  P  HF   RPGI LYG    G     +   +Q  +T 
Sbjct: 177 ERGAQGIAGAR-SLANSAATLWHPQSHFDWVRPGIILYGASPSGVSAAIQGTGLQPAMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I ++    G+ V YG   K      I V A GYADGYP     +  E +P +    
Sbjct: 236 ASELIAVQNIAEGQTVGYGSLFKARGPMRIGVVACGYADGYPR----VAPEGTPVI---- 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    I+G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+
Sbjct: 288 ---VDGVRTRIVGRVSMDMLTVDLTPVPTANVGSRVELWGASLPIDDVARACGTIGYELM 344

Query: 359 VRIGTR 364
             +  R
Sbjct: 345 CAVAPR 350


>gi|330813901|ref|YP_004358140.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486996|gb|AEA81401.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 198

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 114/212 (53%), Gaps = 18/212 (8%)

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY 220
           +SHLACAD+ +++ N++Q  RF  +   +   + SLA+S GI LG  YH+ + RPGISLY
Sbjct: 1   MSHLACADEKNNNYNNIQKARFEKIKKEFSNCKYSLAASGGIFLGKQYHYDMVRPGISLY 60

Query: 221 GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           GG    +K   ++  V+ +  +  I +   GE + Y       +++  A   IGYADG  
Sbjct: 61  GGKRTFHKG--IKHAVSLKVPVTQINQIKKGESIGYSRTFYTKKNTTTATIPIGYADGLN 118

Query: 281 LTLSGLDSEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIF 337
           + LS              KGF   KG  +PI+G+++MD+ + D+T     ++VGD I I+
Sbjct: 119 IRLS-------------NKGFFLFKGKKIPIIGRVSMDLIILDVTKFKNKVKVGDMIDIY 165

Query: 338 GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             D  +DD A  +GT  Y ++  +  RY K Y
Sbjct: 166 NSDYTIDDFAKQTGTIPYRIITCMSQRYDKKY 197


>gi|284929657|ref|YP_003422179.1| alanine racemase [cyanobacterium UCYN-A]
 gi|284810101|gb|ADB95798.1| alanine racemase [cyanobacterium UCYN-A]
          Length = 400

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 171/372 (45%), Gaps = 25/372 (6%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL  N   + N LS      AVVK + YG G   +A  +  AG     V ++ E
Sbjct: 30  MQIDLDALTYNVTQIKNLLSTGTALMAVVKADGYGHGGVTVAKTVLKAGANALAVATLME 89

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDT--NLIPVISSVPQLTFYSKLMSCGVSH-PY 124
           G++LR     + I VL G+    E+++ +   NL   I  + Q    S+ +S        
Sbjct: 90  GIELREAGVNSPILVL-GVTNTPEEVVANIHWNLEATICCLEQAFMISRTLSQYKKQLSV 148

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++DTG +RLG    +              +LS I SHL+ +DDP      +Q +RF T
Sbjct: 149 HLKLDTGMSRLGTPWYQGTRLIKLVHKLPYLKLSGIYSHLSASDDPDKESIELQHQRFET 208

Query: 185 LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
           ++S  K         A+S+  +  P  H+ L R G++LYG   +  +     ++ ++  +
Sbjct: 209 VVSDLKNQNKFCLHFANSAATINYPQLHYNLVRVGLALYGIYPSPHLRSQVSLKPILQVK 268

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A+I  I+    G  VSYG Q       +IA+ +IGYADG P  LS              +
Sbjct: 269 AKITQIKTISQGTKVSYGNQFTSKHSMIIAIVSIGYADGVPRNLSN-----------RLQ 317

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G     +G ITMD  + D++    I+VGD + + G D    I  +D AL  GT ++
Sbjct: 318 VLIHGQRAHQIGAITMDQLILDVSHVKDIKVGDIVTLIGKDGEQEITANDWALELGTISW 377

Query: 356 DLLVRIGTRYAK 367
           ++L     R  +
Sbjct: 378 EILCGFKRRLPR 389


>gi|157691230|ref|YP_001485692.1| alanine racemase [Bacillus pumilus SAFR-032]
 gi|157679988|gb|ABV61132.1| alanine racemase [Bacillus pumilus SAFR-032]
          Length = 392

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 184/386 (47%), Gaps = 31/386 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +N F R    +I+L+A+K+N  H  + +  + +  AVVK NAYG G  ++A A   AG
Sbjct: 1   MDTNAFYRDTWAEINLSAIKHNVSHMKDHIGQSVQLMAVVKANAYGHGDIEVASAALKAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E V LR    +A I VL  +     K+    N+I    S+  L     +M
Sbjct: 61  ADILAVAFLDEAVSLRNKGIKAPILVLGAVPTEYVKVAVRYNVIMTAYSIDWLKDVINMM 120

Query: 117 SCGVSHP--YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSH 173
              +  P  + L++D+G NRLG+   E ++      ++    QL  + +H A AD+    
Sbjct: 121 EGQMGQPIRFHLKIDSGMNRLGVKTIEQVNEVKKLVDEHSYLQLEGVFTHFATADEKDEA 180

Query: 174 VNSVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
               Q++ F+TL+   H   +    A+S+  L   +  F + R GIS+YG   +++I   
Sbjct: 181 YFDRQVDTFQTLLEPLHTDKLLIHCANSAAGLRFKDVLFNMVRFGISMYGLSPSEEIKDE 240

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++  ++   ++  ++    GE VSYG      +D+ I    +GYADG+   L+G +
Sbjct: 241 LPFKLEEAMSLHTKLAHVKHIQKGESVSYGATYTANQDTWIGTVPVGYADGWIRKLAGTE 300

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                 V +GGK         I G+I MD  M ++ D L   VG+ + + G      I++
Sbjct: 301 ------VLVGGK------RRKITGRICMDQFMVELKDKLP--VGEPVVLIGKQGEDMIQV 346

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           D++A    T NY++   IG R  + Y
Sbjct: 347 DEIAKRLETINYEITCSIGHRVPRVY 372


>gi|172063006|ref|YP_001810657.1| alanine racemase [Burkholderia ambifaria MC40-6]
 gi|171995523|gb|ACB66441.1| alanine racemase [Burkholderia ambifaria MC40-6]
          Length = 373

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 170/358 (47%), Gaps = 29/358 (8%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R  AV+K NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L GI  P   ++     L   +    QL     L++     P  +Q  +++G
Sbjct: 71  GWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQLDV---LIAAKPRQPLDIQLKMNSG 127

Query: 132 FNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
            NRLG            +     +G+++L++ H A AD+    V+  QLE+F    +   
Sbjct: 128 MNRLGYRPHAFRAAWERAAAAPSIGKITLMM-HFANADE--GEVDW-QLEQFDAATAGIP 183

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIR 246
           G E S ++S+ +L  P  H    RPG  LYG +      H    P+   +T  ++II ++
Sbjct: 184 G-ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMPAMTLTSKIIGVQ 242

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                E V YG +    R   I V A GYADGYP         H+P+   G    + G M
Sbjct: 243 TLAPDETVGYGRRFTADRPMRIGVVACGYADGYP--------RHAPT---GTPIAVDGVM 291

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 292 TRVVGRVSMDMLTVDLTPCPNAGIGSGVELWGDQVKVDDVAEASGTIGYELMCALAHR 349


>gi|152980345|ref|YP_001353215.1| alanine racemase [Janthinobacterium sp. Marseille]
 gi|166968413|sp|A6SY68|ALR_JANMA RecName: Full=Alanine racemase
 gi|151280422|gb|ABR88832.1| alanine racemase [Janthinobacterium sp. Marseille]
          Length = 359

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 171/369 (46%), Gaps = 40/369 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ AL++N     A + +++  AVVK NAYG G E+       A      +  ++   +
Sbjct: 9   IDIAALRSNLALAKARAPHSKAWAVVKANAYGHGLERGMRGF--AAADGLGLIELDAAAR 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQ 127
           LR      RI +L G     + K++ +  L  VI    QL     +KL +    H   L+
Sbjct: 67  LRELGWNKRILLLEGFFDASDTKLLAEHRLDTVIHCEEQLLMLEQAKLRTQIDVH---LK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVNSVQ- 178
           +++G NRLG        FT   +     +L  I        ++H A A+DP + V  VQ 
Sbjct: 124 LNSGMNRLG--------FTPARYRAAYERLRAIPAVRHISFVTHFANAEDPDNPVLPVQE 175

Query: 179 -LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTV 235
            + RF+       G E SLA+S+  LL P       RPGI LYG T     +    ++  
Sbjct: 176 QVRRFKEATRDLPG-EKSLANSATDLLHPAAAADWIRPGIMLYGATPGAQSAEQFGLRAA 234

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + II ++  +AG+ V YG     T    I V A GYADGYP         H+PS  
Sbjct: 235 MSLHSEIIGVQHIVAGDAVGYGSAFVATAPMTIGVVACGYADGYP--------RHAPS-- 284

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+++MDM   D+T      +G  + ++G  + +D+VA A+GT  Y
Sbjct: 285 -GTPVIVDGVKTRMVGRVSMDMITVDLTPVAKPRIGSKVTLWGASLPIDEVANAAGTVGY 343

Query: 356 DLLVRIGTR 364
           +L+  +  R
Sbjct: 344 ELMCGLAPR 352


>gi|220906119|ref|YP_002481430.1| alanine racemase [Cyanothece sp. PCC 7425]
 gi|219862730|gb|ACL43069.1| alanine racemase [Cyanothece sp. PCC 7425]
          Length = 387

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 177/395 (44%), Gaps = 48/395 (12%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E   +++DL AL  N   +  L S +    AVVK +AYG G   +A  +   G     V 
Sbjct: 8   ERAWVEVDLAALGENTRRIKGLLSPSTELMAVVKADAYGHGAVMVARKVLQQGASSLGVA 67

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS--CGV 120
           ++ EG++LR     A I V   ++   E + I    L   +SS  Q   +S+ +   C  
Sbjct: 68  TIAEGIELRQAGIDAPILVFGAVNTLAEVQAIAQWQLQATLSSPKQALIFSRHLEHPC-- 125

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQ 178
             P  L +DTG  RLG   +++L+     +      L+ + SHLA AD  DPS      Q
Sbjct: 126 --PVHLVIDTGMGRLGCPQEQSLELIKFVYGLPHLTLAGLCSHLAMADAIDPSCMEQ--Q 181

Query: 179 LERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
             +F  ++   +  GI      LA+S+  L  P +H+ L R G++LYG      +     
Sbjct: 182 RCQFEQVVQQVRCAGIPLPPLHLANSAATLRSPQFHYNLVRVGLALYGLYPAPHLRSRVE 241

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +Q V+   ARI L++   AG  VSYG Q    +   IAV  IGYADG P  LS     + 
Sbjct: 242 LQPVLQVRARITLVKTIAAGSGVSYGHQFVAPQPMRIAVVGIGYADGVPRNLS-----NR 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----------- 340
            SV L      +G  V  +G ITMD  + D+T   +++ GD + + G D           
Sbjct: 297 MSVLL------RGQRVAQIGVITMDQLIIDVTGVENVQEGDVVTLIGEDGEDPGATPSRS 350

Query: 341 -------IKLDDVALASGTTNYDLLVRIGTRYAKF 368
                  I +++ A   GT ++++L     R  + 
Sbjct: 351 GQPQVERITVEEWAHTLGTISWEILCNFKQRLPRI 385


>gi|296272487|ref|YP_003655118.1| alanine racemase [Arcobacter nitrofigilis DSM 7299]
 gi|296096661|gb|ADG92611.1| alanine racemase [Arcobacter nitrofigilis DSM 7299]
          Length = 399

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 180/376 (47%), Gaps = 29/376 (7%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  L +N      ++  +++  AV+K + YG G   IA  L   G   F V ++ E 
Sbjct: 10  EINLDNLAHNMRETRRITNIDSKITAVIKADGYGHGAVAIAKTLLENGADRFAVATLSEA 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           + LR       I VL G  P    K I + N+I  I ++ Q   +S++ +S   +    +
Sbjct: 70  LLLRNSFSDVEILVL-GYTPEHLAKDIIENNIIQTIYTLKQAKEFSRVAISLNKNLVVHI 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG+   E    T    +K  G  +  I +H A AD+        Q+E+F  +
Sbjct: 129 KLDTGMHRLGMPFSEETIETILDISKHEGLFIEGIFTHFAIADNIDKKYTKQQVEKFTFI 188

Query: 186 IS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237
           ++    KG+      +++S+ I+  P ++F + R GI LYG     + +H    ++ V+ 
Sbjct: 189 VNSLEEKGLNIPIKHVSNSAAIIDLPEFNFDMVRAGIMLYGLYPSKDVNHNLINLKEVMC 248

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +A I  +++  A   VSYG   K  + S +A   IGYADGY   LSG            
Sbjct: 249 LKANISQVKELEANCGVSYGLTYKCEKKSKVATLPIGYADGYTRMLSG-----------K 297

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            K  +    VP++G I MD  + D+T  L + +GD + +FG +    I +DD++    T 
Sbjct: 298 AKVLVNNTKVPVIGSICMDQCIIDVT-GLDVNMGDEVILFGGNNPNAIAIDDISNLLNTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 357 NYEIVCMIDKRVPRVY 372


>gi|210621786|ref|ZP_03292815.1| hypothetical protein CLOHIR_00760 [Clostridium hiranonis DSM 13275]
 gi|210154550|gb|EEA85556.1| hypothetical protein CLOHIR_00760 [Clostridium hiranonis DSM 13275]
          Length = 388

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 176/374 (47%), Gaps = 28/374 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A K N  S+  +  N  +   +VK +AYG G  +IA  L    V+   V+  EE 
Sbjct: 14  EIDLDAFKRNLKSIRKVLNNGEKICGIVKADAYGHGSVEIAKTLEENDVEYLAVSRAEEA 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           ++LR    +  I +L G  P Q    II +  +  + S    +          +     +
Sbjct: 74  MELRRKGLELPILIL-GYTPEQRYRDIIRNDVMFTIYSMEDAVKLNEAAEELEMDAKVHI 132

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRT 184
           ++DTG NRLG  + E         ++ + ++S+  I +H A AD+       +Q E+F+ 
Sbjct: 133 KIDTGMNRLGFKVTEESICEIKKISE-MDRISIKGIFTHFAAADEVDKSFTEMQGEKFKY 191

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSH-PMQTVV 236
           +++  K  G+E  L   A+S+ I+   +  F + R GI +YG   +D I K   P++ V+
Sbjct: 192 MLNRLKEEGVEVPLVHAANSAAIVDCDDLKFDMVRAGIIMYGCYPSDDIMKERVPVEPVM 251

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T + R+  I+    GE +SYG   +      IA  AIGYADG+      +    +P V +
Sbjct: 252 TIKTRVSHIKTIEPGEKISYGCTYEAKEKERIATLAIGYADGF------VRGRKNPKVCI 305

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNY 355
            GK +       ++G+I MD  M  I     I+VGD   +FG   + + + A   GT ++
Sbjct: 306 NGKDY------EVVGRICMDQCMIKIGMDDDIKVGDEAVVFGKGGVSISEFAEDCGTISH 359

Query: 356 DLLVRIGTRYAKFY 369
           +++  I  R  + +
Sbjct: 360 EIMCNISRRIPRVF 373


>gi|77361350|ref|YP_340925.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876261|emb|CAI87483.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 330

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 169/345 (48%), Gaps = 27/345 (7%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-K 92
           AV+K NAYG G   IA  L +A    F V  ++E + LR       I +L G     +  
Sbjct: 2   AVLKANAYGHGLVTIAQHLNDADA--FAVARIDEALALRAGGLTKPIVLLEGFFDEADLP 59

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YALQVDTGFNRLGLSLQEALDFTHNSF 150
           I+   N   +I    QL   + L +  +  P    L+++TG +RLG++  E  D  +N  
Sbjct: 60  ILLANNFQTIIHDENQL---AALENAQLEAPINCWLKINTGMHRLGIA-PEQFDEFYNRL 115

Query: 151 NKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY 208
            K     + +  ++H +CADD  S     Q+  F  L  + +     L++S+GIL  P+ 
Sbjct: 116 QKTANANNTVNLMTHFSCADDVDSSKTMQQIALFNRLAENVEQAHC-LSNSAGILAWPSG 174

Query: 209 HFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
           H    RPG+ LYG +   N   K++ ++ V+    ++I +R   A E V Y G+ +  + 
Sbjct: 175 HGDWVRPGLMLYGVSPMANTTGKTYQLEPVMRLTTKVIAVRNVAAHEAVGYSGRWQSDKP 234

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TD 324
           + +AV A+GY DGYP         H+ +   G    I      I+G + MDM   DI  +
Sbjct: 235 TQLAVVAMGYGDGYP--------RHARA---GTPVIINKQRYGIVGSVAMDMITLDIGNN 283

Query: 325 SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +I+VGD + ++GP++ ++++A  + T  Y+LL  I  R +  Y
Sbjct: 284 THNIKVGDEVTMWGPELPVEEIAQCADTIPYELLCNITPRVSYQY 328


>gi|251771481|gb|EES52058.1| alanine racemase [Leptospirillum ferrodiazotrophum]
          Length = 403

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 171/391 (43%), Gaps = 44/391 (11%)

Query: 8   RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+ +DL  L+ N  + + +L        V+K NAYG G   ++  + + G+    V   +
Sbjct: 18  RVTVDLGGLRENVRAVLRSLPKGTGLLPVIKSNAYGHGIIPVSQLMTDEGIPRVAVMGAD 77

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EG  LR      +I +L G  P + ++  +  L P+I  + Q+    +      S    L
Sbjct: 78  EGCLLRKSGFSGKIILLGGFAPDEIQLCQNLRLTPIIHHMDQVRALERFSPEAPSLDVHL 137

Query: 127 QVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++D+G  RLG    E    LD      + K+  L   ++H    +D      S+  E FR
Sbjct: 138 KIDSGMGRLGFLPSEFPLVLDRLQRMPSVKIEGL---MTHFPVPED--REDTSICREIFR 192

Query: 184 ----TLISH--YKGIEASLASSSGILLGPNYHFQL------------TRPGISLYGG-TD 224
               T+I H     +     +SSG +L       L             RPGI LYG    
Sbjct: 193 QSIVTMIGHPALSALSVVHMASSGAILSGEVMLDLPTPPSGRRISFWARPGILLYGHFPG 252

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
             N S P++ V   EAR++ IR    G  VSYG   ++ RDS + V  +GYADG P  LS
Sbjct: 253 AHNPSFPVRPVFGLEARVLAIRTLPRGSSVSYGRTVRVDRDSRVGVLGMGYADGLPRLLS 312

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV-GDYIQIFGPD--- 340
           G            G   +  +  P LG+I MDM + D+TD  + E   ++I +  PD   
Sbjct: 313 G-----------KGWAVVGNHRAPFLGRICMDMVVVDLTDIPADETHSEWITLIDPDNTL 361

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            + +D +AL   T  Y++L  +G R  + Y 
Sbjct: 362 SMSVDQLALEGNTIPYEILCLLGHRSERRYV 392


>gi|46579368|ref|YP_010176.1| alanine racemase [Desulfovibrio vulgaris str. Hildenborough]
 gi|81830473|sp|Q72DH4|ALR_DESVH RecName: Full=Alanine racemase
 gi|46448782|gb|AAS95435.1| alanine racemase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233193|gb|ADP86047.1| alanine racemase [Desulfovibrio vulgaris RCH1]
          Length = 376

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 28/367 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L ++  N+  +  ++   R   V+K +AYG G E +  AL   G ++  V +V EG K
Sbjct: 12  VSLQSIIANYRRIRTVA--QRPMPVIKSDAYGHGLEAVGMALEAEGARECAVGTVGEGAK 69

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR     A I  L G    ++ ++   + +IP +  +  L   +   +       AL+ D
Sbjct: 70  LRKAGFGADIVALLGALDREDAQLAASSGIIPTVLDIAGLERLAAQGTPERPVRVALKFD 129

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLI-- 186
           TG  RLG +  +              +  + +SHLA ADDP+ S     Q   F  ++  
Sbjct: 130 TGMARLGFTEHDVSALCERLRTLPSVRPVMAVSHLAVADDPTQSAFTMAQGAAFARIMAG 189

Query: 187 --SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQTVVTAE 239
             S++  I  SL++S+  L  P  H+ + RPGI+LYG     GT        +   ++  
Sbjct: 190 LRSNFPDIMGSLSNSAATLAHPQLHWDVQRPGIALYGSNPLRGTALARHGEGLLPAMSVS 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             ++ +    AG  +SYG     T+D+ +A+ A GYAD Y   LSG            G 
Sbjct: 250 VPVLQVHPLPAGRSISYGRTYTATKDATVAIIAAGYADNYSRALSGR-----------GV 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
               G  VP+LG++ M  T  D+TD   I  GD + + G      +  D++A   GT +Y
Sbjct: 299 AVAGGRRVPVLGRVCMQTTAIDVTDVPGIATGDRVWLLGGPGPATVSADELADLWGTISY 358

Query: 356 DLLVRIG 362
           ++L  +G
Sbjct: 359 EVLCLLG 365


>gi|238751628|ref|ZP_04613118.1| Alanine racemase, catabolic [Yersinia rohdei ATCC 43380]
 gi|238710190|gb|EEQ02418.1| Alanine racemase, catabolic [Yersinia rohdei ATCC 43380]
          Length = 358

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 175/364 (48%), Gaps = 32/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L+AL +N + +    G A+  +VVK NAYG G  ++   L  A    F +  + E + 
Sbjct: 9   INLSALHHNLNIVRQHVGAAKIWSVVKANAYGHGLARVWQGL--AATDGFAMLDLNEAIM 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    Q  I +L G    ++ ++ D  +L   + S  QL     + +  +S P    L+
Sbjct: 67  LREQGWQGPILLLEGFFQPRDIMLLDHYHLTTTVHSDWQL---EAINAARLSAPLNIYLK 123

Query: 128 VDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            ++G NRLG  + Q    +   +    +G ++L+ SH A AD+P         E+F  + 
Sbjct: 124 FNSGMNRLGFPIGQMDAIWQWATSLSNVGDITLM-SHFANADNPIG-----VGEQFSVIQ 177

Query: 187 SHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240
                I A+  LA+S+ IL  P  HF   RPGI LYG +   + +      +Q V++  +
Sbjct: 178 QASAAIPAARCLANSAAILGNPETHFDWVRPGIILYGASPSGDVADIAEIGLQPVMSLNS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II ++   AG  V YG + +      I V A GYADGYP          +P+   G   
Sbjct: 238 EIIALQSLTAGHCVGYGSRYQARSAQRIGVVACGYADGYP--------RLAPN---GTPI 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G +   +G I+MDM   D+T     ++G  ++I+G ++ +D VA A+GT  Y+L+  
Sbjct: 287 MVDGILTQTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVPIDTVAQAAGTVGYELMCA 346

Query: 361 IGTR 364
           +  R
Sbjct: 347 LANR 350


>gi|159905543|ref|YP_001549205.1| alanine racemase [Methanococcus maripaludis C6]
 gi|159887036|gb|ABX01973.1| alanine racemase [Methanococcus maripaludis C6]
          Length = 373

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 176/376 (46%), Gaps = 29/376 (7%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL+A+KNN   +  ++   ++  AVVK NAYG G  +++      G     V    E 
Sbjct: 9   EIDLSAIKNNIKEIRRITNPKSQVMAVVKANAYGHGAIEVSKVCLENGADRLAVARSTEA 68

Query: 69  VKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
           ++LR       I V  Y      EK++ + ++I  + S+       K+      HP   +
Sbjct: 69  LELRNAGITCPILVFGYCTEEEIEKMV-ENDIILTVYSLETANSIQKIAEKLGEHPKIHI 127

Query: 127 QVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG L  +EA++        K  ++  I +H A AD+      ++Q  RF   
Sbjct: 128 KLDTGMSRLGFLPEKEAVEAIQKIMELKNIEVEGIYTHFADADNSDKTYTTMQFSRFTNF 187

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVVT 237
           +   +  E  +     ++S+ I+  P  H  L RPGI LYG   ++ ++K    ++  ++
Sbjct: 188 LHDLEENEIFIPIKHASNSAAIIDHPETHLNLVRPGIILYGLYPSELVHKERIDLKPAMS 247

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  +  +++      +SYG   +  + S IA   IGYADG+   L              
Sbjct: 248 LKVLVTHVKEVPENTKISYGCTFETKKPSKIASLPIGYADGFTRMLKD------------ 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
           G   I G  VP++G+I MD  M D++D  +++VGD + IFG      I +++     GT 
Sbjct: 296 GYVLIHGSRVPVIGRICMDQCMIDVSDIENVQVGDVVTIFGTQEHEKIPIEEFGEKLGTI 355

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+L+  +  R  + Y
Sbjct: 356 NYELVCMVANRVPRKY 371


>gi|297538234|ref|YP_003674003.1| alanine racemase [Methylotenera sp. 301]
 gi|297257581|gb|ADI29426.1| alanine racemase [Methylotenera sp. 301]
          Length = 358

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 175/364 (48%), Gaps = 24/364 (6%)

Query: 11  IDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A ++N+  +  A +G A   AV+K NAYG G    A A+       F V  +EE +
Sbjct: 9   IRLDAFRHNYRVAKQAHAGKA--LAVIKANAYGHGAVHCAKAI-EGEADGFAVACLEEAL 65

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--YAL 126
           +LR       I +L G     E   I   +L  V+ +  Q+     L +  ++ P    L
Sbjct: 66  QLREAGIPEPILLLEGFFEAIELPEIVANDLWIVVHAQWQVEI---LFAAKLAKPLHVWL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++D+G +R+GL   E +       N K +G++ ++++H A AD+ SS+    Q+E F+  
Sbjct: 123 KMDSGMHRVGLPPDEYVQAYERLKNHKNVGKI-VLMTHFANADNVSSNHTLQQIETFQNT 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                  E SLA+S+ IL         TRPGI LYG    +     ++ V+   ++II I
Sbjct: 182 TQGLSA-EISLANSAAILGWKQAKCDWTRPGIMLYGADPLMKADAKLKPVMQLTSKIISI 240

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
                GE + YG      RD+++ V A GYADGYP            S   G    + G 
Sbjct: 241 SNVKQGESIGYGSIFTAERDTVVGVVACGYADGYPR-----------SAVTGTPIAVDGK 289

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           M  ++G+++MDM   D+TD  +  +G  ++++G  +  + VA ++GT  Y+L   +   +
Sbjct: 290 MTRLIGRVSMDMLFVDLTDIPNATIGSQVELWGNQVSANAVATSAGTIAYELFCNVKRAH 349

Query: 366 AKFY 369
            +++
Sbjct: 350 FQYF 353


>gi|170757299|ref|YP_001779928.1| alanine racemase [Clostridium botulinum B1 str. Okra]
 gi|169122511|gb|ACA46347.1| alanine racemase [Clostridium botulinum B1 str. Okra]
          Length = 404

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 187/391 (47%), Gaps = 44/391 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L  L +N   +  ++ +    +VVK +AYG G  +IA  L   G     V  + E 
Sbjct: 10  IEINLDNLIHNMKEIRRVARSKEIISVVKADAYGHGALEIASLLLENGANRLAVAVLSEA 69

Query: 69  VKLRLYTPQARIFVLYGIHP----------GQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           ++LR     A I +L G  P            E II +   + V S         K    
Sbjct: 70  LELRNSGITAPIIIL-GYTPLRYDERTICNNAETIIKNDLEVSVSSYKYAEQLSKKAQQL 128

Query: 119 GVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSS 172
           G      + +DTG  RLG L  +E L+  +     ++ +L  II     SH +  D+ + 
Sbjct: 129 GKDVKIHVNIDTGMGRLGFLPTEENLEKIY-----QISKLPNIIFEGLFSHFSTVDEKNK 183

Query: 173 HVNSVQLERFRTLISHYKGIEAS-------LASSSGILLGPNYHFQLTRPGISLYG--GT 223
              + Q ++F  L  +YK  + +       +A+S+ ++  P  H    RPGI+ YG   +
Sbjct: 184 DYTNEQFKKF--LDFYYKLRDKNVKVNIKHIANSAALIDLPYTHLDAVRPGIAQYGYYPS 241

Query: 224 DKIN-KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            ++N K   ++ ++T +  I+L++   +G+ +SYG + +  R+S IAV  IGYADGY   
Sbjct: 242 SEVNHKDINLRPIMTLKTNIVLVKDIKSGQSISYGRKFRTIRNSKIAVLPIGYADGYERE 301

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---- 338
           LS  ++ +   V + G+        PI+G+ITMDM M D+TD   ++VGD + + G    
Sbjct: 302 LSNENNVYKAQVIVNGR------RAPIVGRITMDMCMIDVTDIGDVKVGDEVILIGECND 355

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             I ++D+A    T  Y++  RI  R  ++Y
Sbjct: 356 ERISVEDIADLLNTIPYEVTSRISKRIPRYY 386


>gi|118602666|ref|YP_903881.1| alanine racemase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567605|gb|ABL02410.1| alanine racemase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 350

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 173/356 (48%), Gaps = 21/356 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I  +ALK+N   +   S N R  ++VK NAYG   + I P + ++ +    V+ + E  K
Sbjct: 7   ISQSALKHNLSVVKKNSLNTRIVSMVKANAYGHHIDLIDPIINHSDL--LGVSEILEAEK 64

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR  T Q  I +L G+   QE +     N   V+    QL+  +       +    ++++
Sbjct: 65  LRKTTNQP-ILLLSGVIKDQELQQAIKLNCQIVVHDKTQLSVVNNTKQ---AIDIWIKIN 120

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           TG NRLGLS  E         N  L  +  I+SH ACAD+ +  +N  QL  F+ L    
Sbjct: 121 TGMNRLGLSTNEYNHCIKLLGNNPLINIQCIMSHFACADEINHPMNQSQLFEFKKLTDPV 180

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249
              + S+A+S+ IL     HF   RPGI LYG +     +H ++ V+   A I+ I+   
Sbjct: 181 VA-KRSMANSAAILSNSASHFDYVRPGIMLYGVSPFNIINHNLKPVMQLSAPIMSIKTIK 239

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
           A + V YG      + + IA   IGY DGYP         H+ +   G    I   + P+
Sbjct: 240 ADDSVGYGVTWTADKSTAIATIGIGYGDGYP--------RHAKN---GTPVLINNTLCPL 288

Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLLVRIGTR 364
           +G+++MD+   DI++ ++  VGD   ++G   ++++ +A  S T  Y+LL  I +R
Sbjct: 289 VGRVSMDLICVDISN-INASVGDNAILWGNKQLRIETIAKHSATIAYELLAGISSR 343


>gi|182436579|ref|YP_001824298.1| putative alanine racemase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465095|dbj|BAG19615.1| putative alanine racemase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 392

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 173/379 (45%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   +   +  A+  AVVK + YG G    A A   AG       + +E
Sbjct: 10  RAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAAREAGATWLGTATPQE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR      RI        G  +   + ++   +  +  L    +   + G +    L
Sbjct: 70  ALALRAAGLDGRIMCWLWTPGGPWREAIEADIDVSVGGMWALREVVAAAAAAGRTARIQL 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +  +    +   ++ G++ +  + SH ACAD+P     + QL  +R
Sbjct: 130 KADTGLGRGGCQPADWPELVGEALAAERAGRVEVTGLWSHFACADEPGHPSIAAQLAVYR 189

Query: 184 TLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQT 234
            L+++ +  G+E     LA+S   L  P  HF L R GI++YG +       +    ++ 
Sbjct: 190 DLVAYAEKEGVEPEVRHLANSPATLTIPEAHFDLVRTGIAMYGVSPAPELGTSADLGLRP 249

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A + L++ A AG  +SYG     T ++ + +  +GYADG P   SG     +  V
Sbjct: 250 VMTLAASVALVKDAPAGHGISYGHHYTTTAETTLGLIPVGYADGVPRHASG-----TGPV 304

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
            +GGK      +  + G++ MD  + D+ D    E G    +FGP    +    D A A+
Sbjct: 305 LVGGK------VRRVAGRVAMDQFVVDL-DGDRPEAGAEAVLFGPGDRGEPTAQDWAEAA 357

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT  Y+++ RIGTR  + Y
Sbjct: 358 GTIAYEIVTRIGTRVPRVY 376


>gi|307729311|ref|YP_003906535.1| alanine racemase [Burkholderia sp. CCGE1003]
 gi|307583846|gb|ADN57244.1| alanine racemase [Burkholderia sp. CCGE1003]
          Length = 356

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 168/366 (45%), Gaps = 28/366 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L   I  +AL NN       +  ++  AVVK NAYG G  +  P L       F +  +E
Sbjct: 5   LSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARAFPGLR--ATDGFGLLDLE 62

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E VKLR       I +L G   P    +I   +L   + S  QL     L    +S P  
Sbjct: 63  EAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRM---LEMARLSKPVN 119

Query: 126 LQ--VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +Q  +++G NRLG + ++    +      + +GQ++L+ +H + AD  S    + Q+E F
Sbjct: 120 IQLKMNSGMNRLGYTPEKFRAAWERARACQGVGQITLM-THFSDAD--SERGVAHQMEAF 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTA 238
                   G   SLA+S+  L  P  HF   RPGI +YG    G     +   +Q  +T 
Sbjct: 177 ERGAQGIAGAR-SLANSAATLWHPQSHFDWVRPGIIMYGASPSGVSAAIEGTGLQPAMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I ++    G+ V YG   K      I V A GYADGYP     +  E +P +    
Sbjct: 236 ASELIAVQSVPEGQTVGYGSLFKARAPMRIGVVACGYADGYPR----VAPEGTPVI---- 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    I+G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+
Sbjct: 288 ---VDGVRTRIVGRVSMDMLTVDLTPVPTANVGSRVELWGTSLPIDDVARACGTIGYELM 344

Query: 359 VRIGTR 364
             +  R
Sbjct: 345 CAVAPR 350


>gi|253989451|ref|YP_003040807.1| alanine racemase, catabolic [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780901|emb|CAQ84063.1| alanine racemase, catabolic [Photorhabdus asymbiotica]
          Length = 357

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 164/364 (45%), Gaps = 32/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L AL+NN   +    GN++  AVVK NAYG G   I P L  A    F +    E + 
Sbjct: 9   IHLDALENNLAVIRNKVGNSKIWAVVKANAYGHGLRCIWPHLDQA--DGFALLDFNEAIL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    Q  I +L G   P   +II +  L  V+ S  QL     + +   SHP    L+
Sbjct: 67  LREQGWQRPILLLEGFFQPEDLRIIDEYQLTTVVHSHWQL---KAIEAANFSHPINIYLK 123

Query: 128 VDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++G NRLG      +E L    N   +++GQ++L+ SH A AD     +   +      
Sbjct: 124 LNSGMNRLGFPADQYREVLSLAKNI--RQIGQITLM-SHFANAD---KKIGVTEQLNVID 177

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240
            +S    I   LA+S   L  P  H    R GI+LYG +            ++ V++ ++
Sbjct: 178 SVSQGLNISQCLANSGACLWYPQTHRDWVRTGIALYGASPSGKWEDIADVGLKAVMSLKS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II ++   AG+ + YG +        +   A GYADGYP                G   
Sbjct: 238 EIIAVQNLKAGDKIGYGSKYTAPGPMRVGTVACGYADGYPRC-----------AMTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    +LG I+MDM   D+T     ++G  ++++G ++ +DDVA   GT  Y+LL  
Sbjct: 287 IVNGVRTQMLGAISMDMMTVDLTPCPQAQIGSPVELWGQNLPVDDVAGVPGTIGYELLCA 346

Query: 361 IGTR 364
           +  R
Sbjct: 347 LAER 350


>gi|253583474|ref|ZP_04860672.1| alanine racemase [Fusobacterium varium ATCC 27725]
 gi|251834046|gb|EES62609.1| alanine racemase [Fusobacterium varium ATCC 27725]
          Length = 364

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 179/373 (47%), Gaps = 36/373 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+ID+  LK N + +  L        V+K N+YG G  +IA  L   G++ F V S+EE 
Sbjct: 5   LEIDMDNLKYNLNKIKELVHGTNVLGVIKANSYGFGAIEIAKELSKFGIEIFGVASLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR    +  I +L  +   + +I  +      +SS+ Q+ F   L S  +     +++
Sbjct: 65  MELREGGIEEEILILGSLFNDEIEIAAEKKFQITVSSMRQIEF---LESNKIDAEIHIKI 121

Query: 129 DTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERF 182
           DTG  RLG +  E   A+D+  N   K +G    I SHL+ AD   D + +    Q+ +F
Sbjct: 122 DTGMGRLGFTPSEGRKAVDYCINRGLKVVG----IYSHLSDADGMNDEAYNYTKEQINKF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQ--LTRPGISLYG--GTDKINKSHPMQTVVTA 238
           + +   YK I+     +SG +L  N  F+  L R GI +YG  G +++      + V T 
Sbjct: 178 K-IFEEYKTIKYIHILNSGGILRFNDGFKGNLVRAGICMYGMLGNERV---PGFKRVFTM 233

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           + RI+ IR       +SYG   KL +    A  AIGYAD       G+  E S   +   
Sbjct: 234 KTRILFIRTLEEDSYISYGRTIKLKKGETFATLAIGYAD-------GMKKEFSNKTY--- 283

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
              I+G   PI+G+I MDM M  I +S+   I +G    +   DI ++++     +T +D
Sbjct: 284 -ALIEGEKCPIVGEICMDMCMVKIPESILKKINIGTEAIVIRDDI-IEEINSIHKST-WD 340

Query: 357 LLVRIGTRYAKFY 369
           +L  IG R  + Y
Sbjct: 341 ILTGIGRRVYRVY 353


>gi|218673972|ref|ZP_03523641.1| putative alanine racemase [Rhizobium etli GR56]
          Length = 174

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/130 (57%), Positives = 88/130 (67%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DLTAL  NW  M   SG AR AAVVK +AYGLG E    ALY AG +DFFV +V+
Sbjct: 21  LRLTVDLTALTENWRDMARRSGAARAAAVVKADAYGLGIEDAGEALYLAGARDFFVATVD 80

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV LRLY P ARIFVL GI PG E+  FD +L+PVISS  QL F+  +++    +P AL
Sbjct: 81  EGVTLRLYAPDARIFVLSGIWPGTERRFFDNDLVPVISSDEQLAFWMAVLADYGDYPCAL 140

Query: 127 QVDTGFNRLG 136
            VDTGF   G
Sbjct: 141 HVDTGFTGWG 150


>gi|238788483|ref|ZP_04632276.1| Alanine racemase, catabolic [Yersinia frederiksenii ATCC 33641]
 gi|238723396|gb|EEQ15043.1| Alanine racemase, catabolic [Yersinia frederiksenii ATCC 33641]
          Length = 357

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 178/365 (48%), Gaps = 34/365 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++L+AL++N  ++   +G+A+  +VVK NAYG G  +I   L  A    F +  + E + 
Sbjct: 9   LNLSALRHNLSTVRHHAGSAKIWSVVKANAYGHGLARIWQGL--AATDGFALLDLNEAIM 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    Q  I +L G    Q+ ++ D   L   + S  QL     + +  +S P    L+
Sbjct: 67  LREQGWQGPILLLEGFFQPQDLVLLDYYRLTTTVHSDWQL---EAIKAARLSAPLNIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG  + +A      + +   +G+++L+ SH A AD      N + +E   +LI
Sbjct: 124 LNSGMNRLGFPVGQAEAIWQWAKSLSHVGEVTLM-SHFANAD------NDIGVETQFSLI 176

Query: 187 SHYKG-IEAS--LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
                 I A+   A+S+ IL  P  H+   RPGI LYG     + +      +Q V++  
Sbjct: 177 QQATAQIPAARCFANSAAILRHPETHYDWVRPGIILYGAAPSGDSADIAEMGLQPVMSLN 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++    G  V YG +   +    I V A GYADGYP          +PS   G  
Sbjct: 237 SEIIALQSLSTGHSVGYGSRYTASAAQRIGVVACGYADGYP--------RLAPS---GTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G I+MDM   D+T     ++G  ++++G +  +DDVA A+GT  Y+L+ 
Sbjct: 286 IRVDGILTQTVGSISMDMLTVDLTPCPQAQIGSKVEVWGENQPIDDVAKAAGTVGYELMC 345

Query: 360 RIGTR 364
            +  R
Sbjct: 346 ALANR 350


>gi|229085084|ref|ZP_04217335.1| Alanine racemase [Bacillus cereus Rock3-44]
 gi|228698209|gb|EEL50943.1| Alanine racemase [Bacillus cereus Rock3-44]
          Length = 391

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 174/378 (46%), Gaps = 30/378 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++++L A+K+N           N    A VK NAYG G  ++A A   AGV    V  V+
Sbjct: 11  VEVNLDAIKHNVREFKKRVNDENMTMMAAVKANAYGHGAVEVAKAAIEAGVNQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHP 123
           EG++LR       I +L    +   ++ I +D  ++  +  +  L    ++    G    
Sbjct: 71  EGIELREAGISVPILILGYTPVEAAKDAIEYD--IMMTVYRIEDLKGIDEVAKRLGKKAR 128

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++DTG +R+GL  +E   F     N K  ++  + +H + AD+      ++Q   F 
Sbjct: 129 IQVKIDTGMSRIGLQEEEVAPFLEELKNMKHIEMEGVFTHYSTADEIDKTYTNMQTNLFE 188

Query: 184 TLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
             ++  K +   L     ++S+G +   N    + R GI +YG       +H    +Q  
Sbjct: 189 KAVTTAKEMGIHLPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSQEVAHTVVSLQPA 248

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++++  I+ A     VSYG     T +  IA   IGYADGY   LS           
Sbjct: 249 LSLKSKVAHIKHAKKNRGVSYGNTYVATGEEWIATVPIGYADGYNRQLSN---------- 298

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
             G   I G  VP+LG++ MD  M D+T+++ ++VGD +  +G     +I ++++A   G
Sbjct: 299 -KGHALINGVRVPVLGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQGEEEIPVEEIADMLG 357

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   +  R  + Y
Sbjct: 358 TINYEVTCMLDRRIPRVY 375


>gi|313672870|ref|YP_004050981.1| alanine racemase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939626|gb|ADR18818.1| alanine racemase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 365

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 180/368 (48%), Gaps = 28/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP-ALYNAGVQDFFVTSVEEGV 69
           IDL    NN +    LS +  T  V+K N YG G  ++A   L ++ ++ F V + EEGV
Sbjct: 12  IDLKRYLNNLNIARKLSKSYITP-VIKANGYGHGAIELARFTLEHSDIRIFCVATFEEGV 70

Query: 70  KLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           KLR    ++   ++ G        ++I +  LI +        F   L    + +P +++
Sbjct: 71  KLRYGIGESAEIIVLGFVDEYFFNEVITNNLLINIYDDEIAFRFNKYLEKKRLKYPVSIK 130

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQL--SLIISHLACADDPSSHVNSVQLERFRTL 185
           +DTG NRLG  +  +++F    F +K   L   +++SHL+  D    +  S+Q++RF ++
Sbjct: 131 IDTGMNRLGFDV--SINFIE--FREKYPNLVPKVLMSHLSSPDSDLDYT-SLQIDRFSSV 185

Query: 186 ISHYKGI----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
               K I    + SL +S  +L   N  F  +RPGI  YG   K +    ++ V+   ++
Sbjct: 186 AERAKKIFPYIKTSLFNSPALLSFEN-SFDYSRPGILTYGFV-KSDHDIGIKPVMKIFSK 243

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++     E V Y       + +++ V  IGYADGY   LS             G  +
Sbjct: 244 IIHVKSLDKNESVGYNRTYITGKKTILGVLPIGYADGYNRLLSN-----------RGFVY 292

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + GY  PI+G+I MDMTM DI+D    + G  ++I G +I+ D++A    T +Y++L  I
Sbjct: 293 VDGYKCPIVGRICMDMTMIDISDLPEGKWGKEVEILGDNIRADEMAKMCNTISYEILTSI 352

Query: 362 GTRYAKFY 369
             R  + Y
Sbjct: 353 SPRIPRIY 360


>gi|254497101|ref|ZP_05109922.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353681|gb|EET12395.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 351

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 181/370 (48%), Gaps = 37/370 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+ +AL +N   +   +   +   +VK NAYG G   + P L    V+ F V  +EE 
Sbjct: 1   MVIEPSALLHNLAQIRRFAPGKKIITMVKANAYGCGLHAVVPVL-EGQVEAFGVACIEEA 59

Query: 69  VKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL- 126
           + +R    +    +  G+  P + K++       V+    Q+ +   L++  +  P  L 
Sbjct: 60  MAIRKMGSRTYCILFQGVFSPDEFKMVAQYQFGCVMHQPHQMQW---LLNTPLDTPIKLW 116

Query: 127 -QVDTGFNRLGL---SLQEALDFTHNS--FNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            +V+TG +RLG     LQE ++   +    +K++G    +++HLACAD+P    N  Q+ 
Sbjct: 117 VKVNTGMHRLGFKPHELQEVMNALQDCPWVDKEIG----LMTHLACADEPECIENVQQIS 172

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH------PMQT 234
            F   IS     + S+A+S+ I+  P  H  + RPGI LYG +    ++       P+  
Sbjct: 173 LFEQ-ISVAGFSQRSIANSAAIISFPQTHADVVRPGIMLYGVSPFAKQTAIDLGLVPVMR 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            V+A   I  +        V Y G  K  + S I + A GY DGYP  ++     ++P  
Sbjct: 232 FVSA---ISAVYDHPPFAQVGYSGTWKSDKPSRIGIVAAGYGDGYPRHIAA----NTPI- 283

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
                 +++G  V I+G+++MDM   D+T+   I+ G  ++++G  I ++ +A A+GT+ 
Sbjct: 284 ------WVQGREVTIVGRVSMDMLAVDLTEHPDIQPGAPVELWGTHILVERIAQAAGTSG 337

Query: 355 YDLLVRIGTR 364
           Y+LL +I  R
Sbjct: 338 YELLCQISER 347


>gi|295092961|emb|CBK82052.1| alanine racemase [Coprococcus sp. ART55/1]
          Length = 389

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 190/391 (48%), Gaps = 39/391 (9%)

Query: 1   MHSNEFLRLK--IDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M ++ F R++  I+L  +++N  +M  L  G+ +  AV+K +AYG G  ++A AL +  +
Sbjct: 1   MDNSNFNRVQAVINLDNIRDNITAMKRLIDGDKKMLAVIKADAYGHGAVEVAEALDD--L 58

Query: 58  QDFF-VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL- 115
            DFF V  ++E ++LR       I +L    P   ++I   ++ P +  V      S L 
Sbjct: 59  VDFFAVAFIDEALELRRANIDKPILILGYTDPSDYELILRYDVRPAMYEVDDAQKLSDLA 118

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-----SLIISHLACADDP 170
           +S        ++VDTG  R+G +  E  D   N   +K+ Q+       I +H A AD+ 
Sbjct: 119 VSMNTKAKIHIKVDTGMGRIGFTCDE--DGVKNI--EKISQMPGIEIEGIFTHYAKADEL 174

Query: 171 SSHVNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG--GT 223
                + QLE+FR + S  + +        +++S+GI+   N  F + R GI  YG   +
Sbjct: 175 DKTAANGQLEKFRWINSQLEALGIHIPVRHISNSAGIMEMDNSDFDMVRSGIVTYGLYPS 234

Query: 224 DKINKS-HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
           D+++K+   ++  +   +++I ++   AG  + YG       D  +A  + GYADGYP  
Sbjct: 235 DEVDKNIAALKPAMRLMSKVIFVKDVKAGTGIGYGWSYIADHDIKVATVSAGYADGYPRA 294

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
            S +           G+  I G   PI+G++ MD  M D++    ++V D + + G D  
Sbjct: 295 QSNI-----------GRVIIHGEYAPIIGRVCMDQFMVDVSHIDGVKVRDDVTLIGQDGD 343

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             + +++VA  + + NY+L+  I  R  + Y
Sbjct: 344 REVTVEEVAAPANSFNYELVCNISRRVPRTY 374


>gi|187777116|ref|ZP_02993589.1| hypothetical protein CLOSPO_00661 [Clostridium sporogenes ATCC
           15579]
 gi|187774044|gb|EDU37846.1| hypothetical protein CLOSPO_00661 [Clostridium sporogenes ATCC
           15579]
          Length = 402

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 187/391 (47%), Gaps = 46/391 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L  L +N   +  ++ +    +VVK +AYG G  +IA  L   G     V  + E 
Sbjct: 10  IEINLDNLIHNMKEIRRVAKSKEIISVVKADAYGHGASEIASLLLENGANRLAVAVLSEA 69

Query: 69  VKLRLYTPQARIFVLYGIHP----------GQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           ++LR     A I +L G  P            E II +   + V S         K    
Sbjct: 70  LELRNSGITAPIIIL-GYTPLRYDEKTICNNAETIIKNGLEVSVSSYKYAEQLSKKAQQL 128

Query: 119 GVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSS 172
           G      + +DTG  RLG L  +E L+  +     ++ +L  II     SH + AD+ + 
Sbjct: 129 GKDVKIHVNIDTGMGRLGFLPTEENLEKIY-----QISKLPNIIFEGLFSHFSTADEKNK 183

Query: 173 HVNSVQLERFRTLISHYKGIEAS-------LASSSGILLGPNYHFQLTRPGISLYG--GT 223
              + Q ++F  L  +YK  + +       +A+S+ ++  P  H    RPGI+ YG   +
Sbjct: 184 DYTNEQFKKF--LDFYYKLKDKNVKINIKHIANSAALIDLPYTHLDAIRPGIAQYGYYPS 241

Query: 224 DKINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            ++N  +  ++  +T +  I+L++   +GE +SYG + +  R+S IAV  IGYADGY   
Sbjct: 242 SEVNHENINLRPTMTLKTNIVLVKDIKSGESISYGRRFRTIRNSKIAVLPIGYADGYERE 301

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---- 338
           LS  D+ +   V + G+        PI+G+ITMDM M D+TD   ++VGD + + G    
Sbjct: 302 LS--DNVYKTQVIVNGR------RAPIVGRITMDMCMIDVTDVGDVKVGDEVILIGECND 353

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             I ++D+A    T  Y++  RI  R  ++Y
Sbjct: 354 EKIAVEDIADLLHTIPYEVTSRISKRIPRYY 384


>gi|78780004|ref|YP_398116.1| alanine racemase [Prochlorococcus marinus str. MIT 9312]
 gi|78713503|gb|ABB50680.1| alanine racemase [Prochlorococcus marinus str. MIT 9312]
          Length = 399

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 190/389 (48%), Gaps = 53/389 (13%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++   A+++N   + + LS + +  AVVK + YG   + ++      G     V +++E
Sbjct: 30  IEVKGKAIESNVRQLRSKLSKSCQFMAVVKADGYGHDAKVVSEYAIKGGASQLGVATLKE 89

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           G+ LR    +  I +L  ++  ++ II F  +L+P ISS+ +    + +    G      
Sbjct: 90  GIMLRSSGVKKPILILGNLYAKRDLIISFKNDLMPTISSIRECLICNNIGKHFGSKFSLH 149

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACAD-----DPSS 172
           L+VDTG +RLG        F  N F ++  ++          I SHL+ AD     DP S
Sbjct: 150 LKVDTGMSRLG--------FESNKFVQQFEKIKSFENISVEGIYSHLSSADEDNSLDPKS 201

Query: 173 HVNSVQLER--FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD- 224
              S Q++R  F+ L+          I+  LA+S+G+L+  ++HF + R G+S+YG +  
Sbjct: 202 ---STQIQRLKFQELLQQINVDRNHNIKIHLANSAGMLINKDFHFHMVRVGLSMYGYSPL 258

Query: 225 -KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
            KI+++  ++  +  + ++  IR    G  VSYGG+    R + +AV +IGYADG P  L
Sbjct: 259 AKIDRNLSLKPALFLKVKVAFIRIIDQGVKVSYGGKFVSGRKTKLAVLSIGYADGVPRNL 318

Query: 284 SG-LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
           SG ++  H+  ++            P +G ITMD  M DIT S  I++G  + + G D  
Sbjct: 319 SGKINVIHNNELY------------PQVGSITMDQMMVDITGSDEIKIGSTMLLLGSDGD 366

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAK 367
             I   D A  S T  +++L     R  +
Sbjct: 367 KTISPFDWANQSNTIPWEILCSFKNRLPR 395


>gi|167746566|ref|ZP_02418693.1| hypothetical protein ANACAC_01276 [Anaerostipes caccae DSM 14662]
 gi|167653526|gb|EDR97655.1| hypothetical protein ANACAC_01276 [Anaerostipes caccae DSM 14662]
          Length = 388

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 179/392 (45%), Gaps = 46/392 (11%)

Query: 4   NEFLRL--KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           N++ R+   IDL A+ +N   +  L G + +   V+K + YG G   +A AL   GV  F
Sbjct: 2   NQYYRVYAAIDLDAVCHNISEIKKLVGPDTKIMPVIKADGYGHGAVPVAKALNKIGVDGF 61

Query: 61  FVTSVEEGVKLRLYTPQARIFVL-------YG--IHPGQEKIIFDTNLIPVISSVPQLTF 111
            V  +EEG+ LR       I +L       Y   I    E+ +F   +   IS      F
Sbjct: 62  AVAIIEEGIALRKQGITKPILILGYTSEYQYASLIQHEIEQTVFSYEMAEAISK-----F 116

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADD 169
              +      H   ++VDTG NR+G    E          +KL  + +  I +H ACAD+
Sbjct: 117 AVTMKKEARIH---IKVDTGMNRIGFKPTEE-SVGQVQRIQKLPNIKIQGIFTHFACADE 172

Query: 170 PSSHVNSVQLERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYG--G 222
                   Q E F   +S    KGIE     +++S+ I+        + R GI  YG   
Sbjct: 173 EDKTSARYQKELFDQFVSKIEEKGIEIPVKHVSNSAAIMDLRECRMDMVRSGIITYGLYP 232

Query: 223 TDKINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
           +++++KS   ++  ++  + +I +++   GE VSYG      R + IA   +GYADGYP 
Sbjct: 233 SEEVDKSAIDLKPALSLISHVIHVKEVGPGEGVSYGSTFVTDRKTRIATIPVGYADGYPR 292

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
            LS             G+  I+G   PI+G+I MD  M D+TD   + V D + + G + 
Sbjct: 293 ALSSR-----------GRVIIRGQYAPIIGRICMDQFMVDVTDIEGVSVMDRVTLVGTEG 341

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              I +++ A  +G+ NY+ +  IG R  + Y
Sbjct: 342 DKNISVEEAADLAGSFNYEFVCGIGKRVPRVY 373


>gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
          Length = 818

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 170/376 (45%), Gaps = 35/376 (9%)

Query: 8   RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+++L+AL +N  +    L    +T  ++K  AYG G  ++A  L    V    V   +
Sbjct: 461 RLEVNLSALAHNLRAYQRCLKPGVKTMVMIKATAYGAGSREVARLLEYLRVDYCCVAYAD 520

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EG +LR     A I VL       E++     L PV+ S+ QL   S+     + H   L
Sbjct: 521 EGTELRQAGISAPIMVLNPEAGAFEQMRLQ-RLEPVVYSLEQLNNMSQ---EALPHGVHL 576

Query: 127 QVDTGFNRLGLSLQEA---LDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +D+G +RLG  L E    LD+  TH   + K      + +HLA ++DP+   ++   E+
Sbjct: 577 SIDSGMHRLGFDLHEMEGLLDYLRTHPELHVKS-----VYTHLAASEDPAH--DAFTHEQ 629

Query: 182 FRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            R     Y  I A L         +S+GI   P Y   + R GI LYG         P+Q
Sbjct: 630 ARRFNQAYARITAVLGYHPLQHALNSNGITRFPQYQQDMVRLGIGLYGIDVSNTLPEPLQ 689

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++ +A I  I+   AGE + YG + +          ++GYADG       L       
Sbjct: 690 VVLSFKATISQIKTIAAGETIGYGRRAQAHSLMRTGTISVGYADG-------LRRAAGNG 742

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
            F  G   ++G   PILG + MDM+M D+T     + GD ++IFG D  + ++A    T 
Sbjct: 743 AFSVG---VRGKRAPILGSVCMDMSMIDLTHIPEAQTGDTVEIFGHDPSVQELAKILATI 799

Query: 354 NYDLLVRIGTRYAKFY 369
            Y++   I  R  + Y
Sbjct: 800 PYEVFTGISQRVKRVY 815


>gi|110835047|ref|YP_693906.1| alanine racemase [Alcanivorax borkumensis SK2]
 gi|123149285|sp|Q0VMG4|ALR_ALCBS RecName: Full=Alanine racemase
 gi|110648158|emb|CAL17634.1| alanine racemase, catabolic [Alcanivorax borkumensis SK2]
          Length = 353

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 173/372 (46%), Gaps = 44/372 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++I L AL+NN      L+G+A+  A+VK N YG G    A  + ++ V    V  ++E
Sbjct: 5   RVEIRLAALRNNALRAAELAGDAQVFAMVKANGYGHGLLLAAETMLDS-VSGLGVAVLDE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
              LR +     I V  G    +E +     +L  V+ S+ Q+     L++        L
Sbjct: 64  ARTLREHGIALPILVAEGFFDAEELEAAARLSLEVVVHSLWQVEL---LLANPCPVRIWL 120

Query: 127 QVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERF 182
           +V+ G NRLGL   EAL        + N  +G    ++SH ACAD D   H     L   
Sbjct: 121 KVNAGMNRLGLRPNEALSAAARLSQAGNAPVG----VMSHFACADMDEDIHSEKQLL--L 174

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE--- 239
              ++    +  S ++S+ +L  P  H Q  RPGI LYG       S P      AE   
Sbjct: 175 AGSVAEQLQLPLSASNSAALLRYPRAHAQRVRPGIMLYG-------SSPFNWQTAAELGL 227

Query: 240 -------ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
                  AR+I I    AGE V YG     +    I V A+GY DGYP         H+P
Sbjct: 228 QVSHRFSARLIAINAVEAGESVGYGATWTASDPRQIGVVAVGYGDGYP--------RHAP 279

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
           S   G    + G +  ++G+++MDM   D+T  LS  VGD ++++G  + +DDVA A GT
Sbjct: 280 S---GTPVAVNGVVTTLVGRVSMDMITIDVT-GLSASVGDEVELWGDVVDVDDVARACGT 335

Query: 353 TNYDLLVRIGTR 364
            +Y+L  +I  R
Sbjct: 336 ISYELFCQITQR 347


>gi|255659976|ref|ZP_05405385.1| alanine racemase [Mitsuokella multacida DSM 20544]
 gi|260847728|gb|EEX67735.1| alanine racemase [Mitsuokella multacida DSM 20544]
          Length = 369

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 170/383 (44%), Gaps = 35/383 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N     +IDL AL++N+  +   + G A+  AVVK +AYG G   +A     AG     V
Sbjct: 3   NRAAWAEIDLAALRHNYEEIKKNIRGGAKLCAVVKADAYGHGALAVARVAVEAGASYLAV 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++ E ++LR       I +L  + P + + I D ++  V+  +P     S+       H
Sbjct: 63  ATLGEAIELREAGFTVPILLLGLVLPDEARDIVDYDVTQVVCELPLAEAISR--EAVRQH 120

Query: 123 PYA---LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV 177
             A   L+V+TG  R+G+  +E       +  K+L  + +  + SH A AD         
Sbjct: 121 KTAKVHLKVETGMGRIGIRPEEIGALA--AAVKQLPNIEIEGMFSHFAMADSKDKTYTKG 178

Query: 178 QLERFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           QL +F   +   + +E +        +A S+ IL  P  H+ + R G+  YG       +
Sbjct: 179 QLAKFEQAL---RAVEEAGVKLKIRHIAESAAILEIPEAHYDMVRAGVIQYGMWPSDEVT 235

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           HP  ++ V+   A+++ ++    GE + YG Q    R+S IA   IGYADGY        
Sbjct: 236 HPIDLKPVMKVCAKVVFMKTLHPGESIGYGRQFIAERESRIATLPIGYADGYIRAYGN-- 293

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDV 346
                    GG     G   PI G++ MD  M D+TD   ++ GD   +FG + +  D  
Sbjct: 294 ---------GGYVSFGGRKAPIAGRVCMDQVMVDVTDLPDVKEGDTAVLFGDETVTADTA 344

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T NY++   I  R  + Y
Sbjct: 345 AKWLNTINYEVTCLISPRVPRVY 367


>gi|89092607|ref|ZP_01165560.1| alanine racemase [Oceanospirillum sp. MED92]
 gi|89083119|gb|EAR62338.1| alanine racemase [Oceanospirillum sp. MED92]
          Length = 358

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 176/372 (47%), Gaps = 36/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L A+++N+    +++ +    A++K NAYG G  ++A AL +     F V  +EE ++
Sbjct: 9   ISLEAIRHNYSLAKSVAPDQGALAIIKANAYGHGAVEVAKALSDIA-DGFGVACIEEAIE 67

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    +  I +L G     E   I   NL   + S+ Q+     + +  +  P    L+
Sbjct: 68  LREAGIKLPILLLEGFFSADELDYISRENLWCAVHSLAQIDI---IAAAKIDTPIKIWLK 124

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-----LIISHLACADDPSSHVNSVQLERF 182
           +D+G +RLG++  +     +    ++L  L+     ++++H + AD+P   V + Q+  F
Sbjct: 125 MDSGMHRLGVAPDD-----YQEAYQRLNDLTQVKEVVLMTHFSSADEPDLAVTAEQIALF 179

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
             +    +GIEA  SLA+S+G +  P       RPGI LYG T        +  ++  +T
Sbjct: 180 DKVT---QGIEADVSLANSAGTMAYPEARRSWQRPGIMLYGATPFAMPQEVADKLKPAMT 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R    GE V Y       + + +   A+GYADGYP         ++ S   G
Sbjct: 237 LSSEVIAVRDLEPGEAVGYSCTWVCDKPTRVGTVAMGYADGYP--------RYAKS---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G    I+G+++MDM   D+TD    EVG Y++ +G ++   ++A    T  Y L
Sbjct: 286 TPVLVNGQKSQIIGRVSMDMLAVDLTDIPDAEVGSYVEFWGDNLAASEIATYCDTIPYTL 345

Query: 358 LVRIGTRYAKFY 369
              I  R  K Y
Sbjct: 346 FTGITRRVHKKY 357


>gi|323526510|ref|YP_004228663.1| alanine racemase [Burkholderia sp. CCGE1001]
 gi|323383512|gb|ADX55603.1| alanine racemase [Burkholderia sp. CCGE1001]
          Length = 356

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 167/366 (45%), Gaps = 28/366 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L   I  +AL NN       +  ++  AVVK NAYG G  +  P L       F +  +E
Sbjct: 5   LSATIHTSALANNLAVARRYAPRSKIWAVVKANAYGHGLARAFPGLR--ATDGFGLLDLE 62

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E VKLR       I +L G   P    +I   +L   + S  QL     L    +S P  
Sbjct: 63  EAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRM---LEMARLSKPVN 119

Query: 126 LQ--VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +Q  +++G NRLG + ++    +      + +GQ++L+ +H + AD      +  Q+E F
Sbjct: 120 IQLKMNSGMNRLGYTPEKFRAAWERARACQGVGQITLM-THFSDADGERGIAH--QMEAF 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTA 238
                   G   SLA+S+  L  P  HF   RPGI LYG    G     +   +Q  +T 
Sbjct: 177 ERGAHGIAGAR-SLANSAATLWHPESHFDWVRPGIILYGASPSGVSAAIEGTGLQPAMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I ++    G+ V YG   K      I V A GYADGYP     +  E +P +    
Sbjct: 236 ASELIAVQSVAEGDTVGYGSLFKARAPMRIGVVACGYADGYPR----VAPEGTPVI---- 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    I+G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+
Sbjct: 288 ---VDGVRTRIVGRVSMDMLTVDLTPIPTASVGSRVELWGTSLPIDDVARACGTIGYELM 344

Query: 359 VRIGTR 364
             +  R
Sbjct: 345 CAVAPR 350


>gi|206889591|ref|YP_002248188.1| alanine racemase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|259710075|sp|B5YIM9|ALR_THEYD RecName: Full=Alanine racemase
 gi|206741529|gb|ACI20586.1| alanine racemase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 363

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 183/387 (47%), Gaps = 52/387 (13%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA----AVVKDNAYGLGCEKIAPALYNAGVQD 59
           + FL+ +I+L +L +N+  + A   N R +    A+VK +AYG G  ++A      GV  
Sbjct: 2   SRFLQAEINLKSLIHNFSKIKAHLRNTRVSCKIIAIVKADAYGHGAVEVARVFGLLGVDY 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
             V   EE + LR    +  I VL+     + + +F  NLIPVI    Q  F SK  S  
Sbjct: 62  LGVAFSEEAIVLREAGIKVPIIVLF---DREIEGVFKYNLIPVIFDYRQAEFLSKEASRR 118

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-----IISHLACADDPSSH 173
           GV  P  ++V+TG  RLG+              KK+ QL       ++SH + A+D    
Sbjct: 119 GVILPVHIKVETGMGRLGIYENPCETI------KKIAQLDNLKIDGVMSHFSRAEDLEW- 171

Query: 174 VNSVQLERFRTLIS--HYKGIEA--SLASSSGILLGPNYH---FQLTRPGISLYGGTDKI 226
               Q+++F  +    H  G++    +A+S G+    NY    F   RPG+ LYG     
Sbjct: 172 -TQEQMKKFSKIREFLHNLGMKPLFHIANSQGL----NYKEALFDAVRPGLMLYG----- 221

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
             +      +T + +++ IRK   G  +SYGG     +DSLI V  +GYADGY  +LS  
Sbjct: 222 YGAEGFIPCMTVKTKLLDIRKLPKGTPISYGGTFVTKKDSLIGVIPVGYADGYFRSLSN- 280

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIK 342
                       +  ++G  VP++G + MD+TM D+TD   +++ D + + G     +I 
Sbjct: 281 ----------KAEVIVRGKRVPVVGTVCMDLTMIDLTDIQEVQIDDEVILLGKTGSEEIT 330

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
              +A  +GT  Y++L   G R  + Y
Sbjct: 331 ASHIAQWAGTIPYEVLTSFGGRARRKY 357


>gi|153820397|ref|ZP_01973064.1| alanine racemase [Vibrio cholerae NCTC 8457]
 gi|126509060|gb|EAZ71654.1| alanine racemase [Vibrio cholerae NCTC 8457]
          Length = 307

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/281 (33%), Positives = 139/281 (49%), Gaps = 17/281 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA   +  G   F V  +EE ++
Sbjct: 11  INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIA--RHALGADAFGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G + PG   ++   N+  V+    QL     L    +  P    L+
Sbjct: 69  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL---QALEQAQLETPVMVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD+G +RLG+  ++  DF    H   N  + +    +SH  CAD+        Q E F +
Sbjct: 126 VDSGMHRLGVRPEQYQDFVARLHQCEN--VAKPLRYMSHFGCADELDKSTTVEQTELFLS 183

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ 
Sbjct: 184 LTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSH 242

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
           +I +R+  AGE V YGG     RD+ I V AIGY DGYP T
Sbjct: 243 LIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRT 283


>gi|94310342|ref|YP_583552.1| alanine racemase [Cupriavidus metallidurans CH34]
 gi|166969425|sp|Q1LNJ3|ALR_RALME RecName: Full=Alanine racemase
 gi|93354194|gb|ABF08283.1| alanine racemase 2, PLP-binding protein [Cupriavidus metallidurans
           CH34]
          Length = 368

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 165/366 (45%), Gaps = 32/366 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +  +R  AVVK NAYG G  ++   L  A    F +  + E V 
Sbjct: 9   IHQPALANNLEVVRRQAPASRIWAVVKANAYGHGIRRVFAGLKAA--DGFGLLDLSEAVL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           LR    Q  I +L GI   Q+  + +   L   +    QL         G   P A+Q+ 
Sbjct: 67  LRDLGWQGPILLLEGIFQAQDVPLLEQYRLTTAVHCEEQLRMLELARPKG---PLAIQLK 123

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLERF 182
            +TG NRLG    +     + +  ++   +S I     ++H + AD  S    + Q+E F
Sbjct: 124 LNTGMNRLGFRPAQ-----YRAAWERARTMSCIGSIVHMTHFSDAD--SKRGIAHQVEAF 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTA 238
               ++  G E S+A+S+ +L  P  H    RPGI LYGG+     S      +Q  ++ 
Sbjct: 177 EAATANLPG-EVSMANSAAVLWHPQAHRNWVRPGIILYGGSPTGVSSDIAETGLQPAMSL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I I+    G+ V YG      R   + V A GYADGYP    G     +P      
Sbjct: 236 HSELIGIQDLQPGDTVGYGSMFTADRAMRVGVVACGYADGYPRHAVGWGERRAPV----- 290

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    ++G+++MDM   D+T     +VG  + ++G  + +DDVA ASGT  Y+L+
Sbjct: 291 --LVDGVRTQLVGRVSMDMICVDLTPCPKAKVGTPVTLWGHGLPIDDVAAASGTVGYELM 348

Query: 359 VRIGTR 364
             +  R
Sbjct: 349 CALAPR 354


>gi|323140360|ref|ZP_08075291.1| alanine racemase [Phascolarctobacterium sp. YIT 12067]
 gi|322415164|gb|EFY05952.1| alanine racemase [Phascolarctobacterium sp. YIT 12067]
          Length = 372

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 174/383 (45%), Gaps = 27/383 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           MH       +I+L A+ +N     A L    +  AVVK +AYG G  ++A      G   
Sbjct: 1   MHIQRGAWAEINLDAVAHNVQMAKANLKPTTKLCAVVKADAYGHGAVRVAQEAARNGADF 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSC 118
           F V  ++EGVKLR    +  I VL  + P   +I    ++   +    +L    +  +  
Sbjct: 61  FAVALLQEGVKLREAGIETPILVLGSMLPEVAEICVRYDISHAVFDEERLYALNAAALKL 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  +++DTG +R+G+ +++A  F   + +     +  + SH A AD       + Q
Sbjct: 121 HTKAKIHIKIDTGMHRIGVHVRDAGRFAKLAASLPGIYIEGVFSHFATADADDKQYAAYQ 180

Query: 179 LERFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
            ERF+  +   + IEA         +A+S+ +     Y   + R GI+LYG      I+ 
Sbjct: 181 FERFQEAL---RLIEAEGVHIPIRHIANSAALTELQEYQLDMVRQGITLYGLHPAHMIDC 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               + V+T + ++  ++    GE + YG    LTR S+IA   IGYADG    LS    
Sbjct: 238 YKDFEPVMTVKTQVAFVKTLPPGETIGYGRTYTLTRPSVIATVPIGYADGVSRRLSNR-- 295

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVA 347
                    G   + G   PI+G++ MD TM D+TD   +++G  + +F G ++ ++ VA
Sbjct: 296 ---------GYMLVNGKKAPIIGRVCMDQTMLDVTDIPDVKLGSEVIVFGGRELPMELVA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
             + T  Y+++  +  R  + Y 
Sbjct: 347 EWADTICYEIVCDVSPRVPREYV 369


>gi|238765457|ref|ZP_04626377.1| Alanine racemase, catabolic [Yersinia kristensenii ATCC 33638]
 gi|238696314|gb|EEP89111.1| Alanine racemase, catabolic [Yersinia kristensenii ATCC 33638]
          Length = 355

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 179/365 (49%), Gaps = 34/365 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++L+AL +N   +   +  A+  +VVK NAYG G  +I   L  A    F +  + E + 
Sbjct: 9   LNLSALHHNLSLVRQRAKTAKIWSVVKANAYGHGLARIWSGL--AATDGFALLDLNEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G    Q+ ++ D   L   + S  QL     + +  ++ P    L+
Sbjct: 67  LREQGWHGPILLLEGFFQPQDLVLLDHYRLTTSVHSDWQL---EAIKAARLTAPLNIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            ++G NRLG  + +A      + +   +G+++L+ SH A AD      NS+ ++   T I
Sbjct: 124 FNSGMNRLGFPVGQAQAVWQWAKSLSNVGEVTLM-SHFANAD------NSIGVDEQFTQI 176

Query: 187 SHYKG-IEAS--LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
               G I A+   A+S+ IL  P  H+   RPGI LYG +   + +      ++ V++  
Sbjct: 177 QQATGHIPAARCFANSAAILRNPQTHYDWVRPGIILYGASPSGDMADIAGMGLRPVMSLR 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   AG+ V YGG+ + +    I V A GYADGYP          +PS   G  
Sbjct: 237 SEIIAVQSLSAGQRVGYGGRYRASGAQRIGVVACGYADGYP--------RLAPS---GTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G I+MDM   D+T     ++G  ++I+G ++ +D VA A+GT  Y+L+ 
Sbjct: 286 IMVDGILTHTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVLIDQVAKAAGTVGYELMC 345

Query: 360 RIGTR 364
            + +R
Sbjct: 346 ALASR 350


>gi|224826682|ref|ZP_03699783.1| alanine racemase [Lutiella nitroferrum 2002]
 gi|224601283|gb|EEG07465.1| alanine racemase [Lutiella nitroferrum 2002]
          Length = 355

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 177/359 (49%), Gaps = 27/359 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEGV 69
           I L   ++N+       G  R  AVVK NAYG G  + A A+  A + D + V  +EE +
Sbjct: 8   IRLEHFRHNYELARRQHGG-RALAVVKANAYGHGAVRCAQAV--ADIADGYAVACLEEAL 64

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
           +LR       I +L G+    E + +    L  V+ S  QL     L++   + PY   L
Sbjct: 65  QLREAGLTLPILLLEGVFEAAELREVEQHGLWLVVQSQQQLDM---LLASQPAKPYRVWL 121

Query: 127 QVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++D+G +R G   Q+ A  +   + + K+  + + ++H A AD+P+    + Q+E F   
Sbjct: 122 KMDSGMHRAGFFPQDYAAAYQRLAESGKVDGI-VKMTHFARADEPALSATAQQMETFDAA 180

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARI 242
            +   G E S+A+S+ I++         RPGI LYG T       +   ++ V+   +R+
Sbjct: 181 CAGLPG-EVSVANSAAIMVHERTRRDWGRPGIMLYGATPLPAGYAQDAALKPVMRLTSRV 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             +R+  AGE V YG      R + + + A GYADGYP     L S  SP         I
Sbjct: 240 FGVRELAAGEPVGYGATFVTERPTRVGLIACGYADGYPR----LASTGSPVA-------I 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            G  + I+G+++MDM   D+TD  +  +G  ++++G  + +++VA  +GT  Y+LL  +
Sbjct: 289 DGVRLRIIGRVSMDMITVDLTDLPAAGIGSEVELWGDSVNVNEVAAQAGTIAYELLCNV 347


>gi|160931457|ref|ZP_02078853.1| hypothetical protein CLOLEP_00290 [Clostridium leptum DSM 753]
 gi|156869522|gb|EDO62894.1| hypothetical protein CLOLEP_00290 [Clostridium leptum DSM 753]
          Length = 396

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 180/384 (46%), Gaps = 38/384 (9%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++DL AL +N   + +A++ +A+   V+K + YG G   +A     AG   F V+++EE 
Sbjct: 11  QVDLDALDHNIREIRSAIAPSAKLMCVIKADGYGHGAVPLAKESEAAGADWFAVSNLEEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVI---SSVPQLTFYSKLMSCGVSHPY 124
            +LR    Q  I +L G  P  + +++    +   +   S   QL+ Y++    G     
Sbjct: 71  QELREAGIQKPILIL-GFTPDSDARLLAQMEISQAVLSESHARQLSSYAQ--EAGTRVRV 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSSHVN--S 176
            + VDTG  R+GLS Q        +   +              +H A AD+  +  +   
Sbjct: 128 HIAVDTGMTRIGLSAQNQTQALEAAAAARRIAELPGLLLEGLFTHFAVADEAEAGADYTK 187

Query: 177 VQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            Q + FR +    KG   S+     ++S+GIL  P  +F L R GI LYG   + K+ + 
Sbjct: 188 RQYQSFRLVADTLKGWGISIPFCHCSNSAGILDYPEMNFNLVRAGIILYGLEPSSKVRRP 247

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ ++  ++ + +++    G  VSYG      R++ IA   IGYADGYP  LS L   
Sbjct: 248 LDLRPLMELKSVVSMVKTVGPGVDVSYGRTYTTRRETKIATVPIGYADGYPRALSNL--- 304

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G+  ++G    I+G++ MD  M D+T    +E GD + +FG D    + +++
Sbjct: 305 --------GEMLVRGQRARIIGRVCMDQLMLDVTHIPDVEEGDVVTVFGRDGGAFLPVEE 356

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           V+    T NY+ + +I  R  + Y
Sbjct: 357 VSSLDQTINYETVCQITKRVPRIY 380


>gi|332654151|ref|ZP_08419895.1| alanine racemase [Ruminococcaceae bacterium D16]
 gi|332517237|gb|EGJ46842.1| alanine racemase [Ruminococcaceae bacterium D16]
          Length = 372

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 169/380 (44%), Gaps = 40/380 (10%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL+AL++N+ ++ A L    R   V K NAYG G   +A  L   G     V  V+E 
Sbjct: 11  EIDLSALEHNYRALRAMLPAGCRFLGVCKANAYGHGAVPVAQKLEQLGADMLAVACVDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP--VISSVPQLTFYSKLMSCGVSHPYAL 126
            +LR       I  L     G   +     L+   V  +V  L     L    V+    L
Sbjct: 71  RELRQAGITLPILCL-----GNTPVELAPMLLEYQVTQAVGDLATGQALSDAAVAAGKTL 125

Query: 127 ----QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL----IISHLACADDPSSHVNSVQ 178
               ++DTG +RLG   Q   + T     +      L    + +H A AD  S      Q
Sbjct: 126 TIHVKLDTGMSRLGFLWQG--EQTAREIARLCALPGLKAEGMFTHFADADS-SEEYTMGQ 182

Query: 179 LERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSH 230
           L +F    +  + +  +       +S  +L  P  H  + RPGI+LYG     +      
Sbjct: 183 LTKFLDARAALEKLGVTFKICHCGASGAVLNYPCTHIDMVRPGIALYGYYPAPEMEGLDG 242

Query: 231 P-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           P ++ V+T ++RI  +R+  AG  VSYG    L RDS +AV  IGY DGYP +LS     
Sbjct: 243 PGLRPVMTVKSRIAAVRELPAGTCVSYGRTAVLKRDSKLAVVPIGYGDGYPRSLSNRMVM 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       I G + PI+G++ MDM M D+TD   ++ GD   ++GP++  +  A  
Sbjct: 303 E-----------IHGVLCPIVGRVCMDMCMVDVTDLPDVKPGDIALVYGPELT-EKAADL 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +GT  Y+LL  +  R  + Y
Sbjct: 351 TGTIVYELLCDLNPRVPRIY 370


>gi|258516878|ref|YP_003193100.1| alanine racemase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780583|gb|ACV64477.1| alanine racemase [Desulfotomaculum acetoxidans DSM 771]
          Length = 373

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 181/379 (47%), Gaps = 34/379 (8%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L+A+ +N   +  ++   A+  AVVK +AYG G  + A    + GV    V+ V EG
Sbjct: 9   EINLSAIAHNIQELRRIAAPGAQLMAVVKADAYGHGAVETARIALDNGVVILAVSRVSEG 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
           V LR       + VL  + PG+       +L   + ++ Q    S + +  G+     ++
Sbjct: 69  VALREAGIDCPVLVLGYLSPGEVLFSLKNDLSHTVFNMQQAEILSDIATKAGIKAKVHIK 128

Query: 128 VDTGFNRLGLS-----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++TG  RLG       +++ +  T  S  K  G    I +H A +D         QL RF
Sbjct: 129 IETGMGRLGFEACQAVVEQVIAVTRLSHLKVDG----IFTHFAVSDIIDKSYTRQQLFRF 184

Query: 183 RTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQT 234
           + ++   H KG++  L   A+S+ I+  P+ H  + R GI++YG   ++ ++KS   +Q 
Sbjct: 185 QEVLRELHRKGVDIQLKHAANSAAIIDMPDTHLNMVRAGIAMYGLYPSEGVDKSRIVLQP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ + ++  I++  AG  VSYG      R +LIA   +GYADGY   LS          
Sbjct: 245 AMSFKTQVGHIKRVPAGYPVSYGCTYITRRPTLIATLPVGYADGYSRLLSSR-------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               +  I G   P++G++ MD  M D+       +GD + ++G      + +++VA   
Sbjct: 297 ---AEVLIHGQRAPVVGRVCMDQCMIDVGHINDPLIGDEVVLWGQQGESSLPVEEVAEKM 353

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+L+  +  R  + Y
Sbjct: 354 GTINYELVCMVNVRVPRVY 372


>gi|170016583|ref|YP_001727502.1| alanine racemase [Leuconostoc citreum KM20]
 gi|169803440|gb|ACA82058.1| Alanine racemase [Leuconostoc citreum KM20]
          Length = 376

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 179/381 (46%), Gaps = 41/381 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++IDL A++ N  S+ A +G  R  AVVK + YG G   +A ALY  GV+DF V ++ EG
Sbjct: 15  IEIDLGAIQENAQSIMAHAGAKRLIAVVKADGYGHGATPVANALYEIGVRDFAVATIGEG 74

Query: 69  VKLR--LYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +KLR  L     RI VL G+       ++    L P I S+  L+   + +  G +    
Sbjct: 75  IKLRQELAYQDYRI-VLLGVQDIAHVDVMVKYRLSPAIESIDWLSVALQAIPEGATLDVE 133

Query: 126 LQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           L VDTG  R+G   +EA+   + +   N KL +L  + +H A ADD +      Q +RF 
Sbjct: 134 LAVDTGMGRMGAHSKEAVYSVYRYIKNNDKL-ELGGVFTHFATADDSNIGYYKQQAQRFN 192

Query: 184 TLISHYKGIEAS---LASSSGILLGPNYHFQ-----LTRPGISLYG---GTDKINKSHPM 232
             ++   GI      LA+S   L    +H Q       R G  LYG   G   +    P+
Sbjct: 193 DWVTA-AGIPRQYWHLANSGSAL----WHTQEIDTRTIRVGSVLYGYNPGAPLLTLPIPL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V   ++RI  + + + GE VSYG      +   +A   IGYADGY   ++G+      
Sbjct: 248 KHVFALKSRIGAVHQLITGESVSYGATYTAQKPQWVATLPIGYADGYLRRMAGM------ 301

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I G +  ++G+ITMD  +  +  +  I  G  + + G D    I +++ A 
Sbjct: 302 ------RVLINGKVTYVIGRITMDQIVIALDQAYPI--GTEVTLIGRDGDNEITVEEFAD 353

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            + T  +++L   G R  + Y
Sbjct: 354 YANTIPHEILTSFGPRLPRIY 374


>gi|167586833|ref|ZP_02379221.1| alanine racemase [Burkholderia ubonensis Bu]
          Length = 356

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 167/362 (46%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++  AVVK NAYG G  +  P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRYAGQSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD  S    + QL  F    
Sbjct: 124 MNSGMNRLGYTPEKYRAAWERARACHGIGQITLM-THFSDAD--SERGVAEQLAAFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARI 242
            H  G   SLA+S+ +L  P  HF   RPGI LYG +            ++  +T  + +
Sbjct: 181 EHIAGAR-SLANSAAVLWHPGTHFDWVRPGIMLYGASPSGRFADIADTGLKPTMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIAKGQSIGYGSTFSAQAQMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G ++ +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVGSRVELWGNELPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 AR 350


>gi|254448149|ref|ZP_05061612.1| alanine racemase [gamma proteobacterium HTCC5015]
 gi|198262275|gb|EDY86557.1| alanine racemase [gamma proteobacterium HTCC5015]
          Length = 323

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 158/337 (46%), Gaps = 23/337 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N   R  IDL A+++N       +  +R  A VK +AYG G  ++  A     V    V 
Sbjct: 2   NRPARATIDLEAIRHNVKVAKRAAPQSRVLAAVKADAYGHGLTRVLSAFEE--VDALAVA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           SVEE V LR  + +  I VL GI  P    +     L PV     QL + S+  S     
Sbjct: 60  SVEEAVALRAVSDK-DIVVLQGIRQPEHLALCTKHALQPVFHQSQQLDWLSRWSSQDSML 118

Query: 123 PYALQVDTGFNRLGLSLQEALD--FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              L+VD+G +RLG  L +A++  F   S +  + +++  ++H+ACADD S      QL+
Sbjct: 119 SVWLKVDSGMHRLGFDL-DAVERAFVRLSDHAAVNRVA-CMTHMACADDRSDDYTLQQLK 176

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVT 237
            F  + +       S A+S+ +L  P  H+   RPGI LYG +  I  +     +Q  + 
Sbjct: 177 AFERVTADLSAPR-SAANSACVLGWPQAHYDWVRPGIMLYGASPFIGDTAQDWGLQPAMR 235

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A I+ I+    G+ V YG      +   + V AIGY DGYP       +  +P+    
Sbjct: 236 LTAPIVAIKHCRKGDAVGYGRSWVCPKPMTLGVVAIGYGDGYPRHA----NNQTPA---- 287

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
              ++KG+   ++G+++MDM   D+T    + + D +
Sbjct: 288 ---WVKGHTTHLVGRVSMDMIAIDLTGYTDVSIDDEV 321


>gi|269468498|gb|EEZ80156.1| alanine racemase [uncultured SUP05 cluster bacterium]
          Length = 349

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 176/365 (48%), Gaps = 36/365 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I  +AL +N   +      ++  ++VK +AYG     + P +  + +    V+ + E  K
Sbjct: 7   ISQSALAHNLSVVRQSCSGSKIVSMVKADAYGHHLTLVDPIIDESDL--LAVSELSEAQK 64

Query: 71  LRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           LR  T +  I +L G++   E    +  D ++  V+    Q+   ++     GV     +
Sbjct: 65  LREKTDKP-ILLLSGVYSQDELQSALALDCHV--VVHEKEQINLIAQTKQRIGV----WI 117

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG +RLGL   E  +      N  L  +  ++SH ACAD+     N  QL  F  L 
Sbjct: 118 KIDTGMHRLGLLANEYHECIEAFKNNTLVDVECVMSHFACADEIDHPTNEAQLNEFNQLT 177

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
                ++ S+A+S+ IL   N  F   RPGI LYG    GTD+ N    ++ V+   A I
Sbjct: 178 D--DSVKRSMANSAAILSNKNALFDFVRPGIMLYGISPFGTDESN----LKPVMELSAPI 231

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + I+    GE V YG      + + IA+  IGY DGYP         H+ +   G    I
Sbjct: 232 LSIKTIQTGESVGYGATWTADKKTNIAIIGIGYGDGYP--------RHAKN---GTPVCI 280

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRI 361
            G + P++G+++MD+   +I DS++ +VGD + ++G + +  + VA  S T  Y+L+  +
Sbjct: 281 NGEICPLIGRVSMDLICVNI-DSITAKVGDVVTLWGNEKLSAETVATWSDTIGYELVTGV 339

Query: 362 GTRYA 366
            +R +
Sbjct: 340 SSRVS 344


>gi|255994095|ref|ZP_05427230.1| alanine racemase [Eubacterium saphenum ATCC 49989]
 gi|255993763|gb|EEU03852.1| alanine racemase [Eubacterium saphenum ATCC 49989]
          Length = 382

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 178/379 (46%), Gaps = 33/379 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I L  + +N   +  ++G ++  A+VK +AYG G  +I+  L + G+  F + +++EG
Sbjct: 18  MEISLANILHNVKEIQKIAGKSKIIAMVKADAYGHGATEISTFLADNGIDYFAIATLKEG 77

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
           ++LR       I +L  +      II + + +P+++S+      S+   S G      + 
Sbjct: 78  IELRRAGLNKNIILLSPVDNYYADIIVENDFMPIVTSLDNAKALSETAKSYGKVLSIMIA 137

Query: 128 VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG  R+G L   EA+D            +  ++SHL+ + +     + +QL++F+   
Sbjct: 138 LDTGMGRIGYLPNPEAIDEITKIAKLDDIHIKGLLSHLSSSPETDKSYSYMQLDKFKDFT 197

Query: 187 SHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHPMQT 234
                KGI     ++A+S  I+   +      RPGI +YG         D ++    ++ 
Sbjct: 198 EKLKSKGINPEIKTIANSGAIVSMRDMMLDAIRPGILIYGYFPEDTCTCDDLD----LKP 253

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ +A II +++   G   SYG +    +DS+I    +GYADGYP   SG         
Sbjct: 254 ALSVKANIIHMQRVKKGFCCSYGRKFVAKKDSIIGTIPVGYADGYPANYSG--------- 304

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K  + G   PI G I MD+ M D+TD  + +VGD + + G D    I   D+   S
Sbjct: 305 --NAKVIVNGKTAPIAGAICMDLCMIDLTDIENSKVGDEVILLGSDGKNTITALDIEKGS 362

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           G   Y++L   G R  K +
Sbjct: 363 GMFRYEILTGFGQRLPKQF 381


>gi|28212093|ref|NP_783037.1| alanine racemase [Clostridium tetani E88]
 gi|81841128|sp|Q890X1|ALR_CLOTE RecName: Full=Alanine racemase
 gi|28204536|gb|AAO36974.1| alanine racemase [Clostridium tetani E88]
          Length = 387

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 180/382 (47%), Gaps = 40/382 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  L  N   +  +       AVVK +AYG G   IAP L   G     V  + E +
Sbjct: 11  EIDLDKLVYNMQQIKNICKGREIIAVVKADAYGHGALDIAPILLENGATRLAVAVLNEAI 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH------- 122
           +LR     A I VL G  P     + +T+L   I      T YS  ++  +S        
Sbjct: 71  ELRRGGIDAPIMVL-GFTPDS---LIETSLKYNIEQ----TVYSYEIAKEISEVAVKSNR 122

Query: 123 --PYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + +DTG  R+G L  +E++D  +        Q+  I SH A AD+       +Q 
Sbjct: 123 VAKIHIALDTGMGRIGFLPDKESIDKIYKLSKLPNIQIEGIFSHFASADEQDKTYTKLQF 182

Query: 180 ERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-P 231
            +F  + +    +GI+  +   A+S+ I+  P  H +  RPGI +YG   + ++NK    
Sbjct: 183 NKFLWVCNSLEERGIDIKIRHIANSAAIIDMPELHLEGVRPGIIMYGYYPSSEVNKGKLD 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +  I+ I+    G+ +SYG + K  ++S+IA   +GYADGY  +L        
Sbjct: 243 LKPVMSLKTTIVHIKNMEKGKYISYGREFKTEKESIIATLPVGYADGYSRSLYD------ 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKL--DDVA 347
                GGK  +K  + P++G+I MD  M D++    +++GD + + G +  IK+  +++ 
Sbjct: 297 ----KGGKIILKEQLAPLVGRICMDQCMIDVSHIEDVKIGDEVILMGENKGIKMTAEEIG 352

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++   I  R  + Y
Sbjct: 353 NLLGTINYEVTCMISKRVPRVY 374


>gi|288554966|ref|YP_003426901.1| alanine racemase [Bacillus pseudofirmus OF4]
 gi|190403006|gb|ACE78171.1| alanine racemase [Bacillus pseudofirmus]
 gi|288546126|gb|ADC50009.1| alanine racemase [Bacillus pseudofirmus OF4]
          Length = 369

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 169/374 (45%), Gaps = 33/374 (8%)

Query: 10  KIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +I L ALK N  S  A   S   R  AVVK + YG G    A +  N G     V  ++E
Sbjct: 12  QISLQALKENAASFKASLQSPACRLMAVVKGDGYGHGAVAAASSALNGGADYLGVAILDE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            ++LR    +A I VL    P   +     N+   + S        ++ S   S P  + 
Sbjct: 72  AIELRDAGVEAPILVLGYTSPHALREAISRNITLTVFSTDVRDALLEVASEAES-PIKVH 130

Query: 128 V--DTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +  +TG  R+G+  +E L D     ++    ++  I +H A AD+  S     Q  RF +
Sbjct: 131 IKTETGMGRVGVQTKEELLDVMTPLYHHNNIEVEGIFTHFAEADNLQSTYTDEQFARFLS 190

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            I   +  +  +      +S+G L   + H  + R GISLYG    ++   P++      
Sbjct: 191 FIEAIEKDDMHVPIKHCCNSAGTLFHKDKHLDMVRVGISLYGLRPDVSLEFPIELTQAMR 250

Query: 240 --ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I+ +RK   G  +SYG   KL+ + ++A   IGYADG    LS             
Sbjct: 251 LFSSIVSLRKLPEGSSISYGRTHKLSSEKVVATMPIGYADGLSRALS------------- 297

Query: 298 GKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            KGF+   G   PILG++ MD TM D+TD     +GD+++       +D++A  +GT NY
Sbjct: 298 NKGFVTLHGQKAPILGRVCMDQTMIDVTDIPDAALGDHVE-----FPIDEMAELTGTINY 352

Query: 356 DLLVRIGTRYAKFY 369
           +++  +  R  ++Y
Sbjct: 353 EIVCAVSKRVPRYY 366


>gi|162455533|ref|YP_001617900.1| hypothetical protein sce7251 [Sorangium cellulosum 'So ce 56']
 gi|226711060|sp|A9ESU7|ALR_SORC5 RecName: Full=Alanine racemase
 gi|161166115|emb|CAN97420.1| alr [Sorangium cellulosum 'So ce 56']
          Length = 379

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 179/385 (46%), Gaps = 36/385 (9%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           R +++L  L++N   +   L+G  +     V+K +AYG G   +A  L  AG+    V  
Sbjct: 5   RAEVNLAHLRHNLRVLERGLTGATKPQIWGVLKADAYGHGAPAVARTLERAGIPGLCVAL 64

Query: 65  VEEGVKLRLYTPQARIFVLYGIH----PGQEKIIFDTNLIPVI---SSVPQLTFYSKLMS 117
           +EE ++LR    +  I V+ G +     G E+II   +L+PV+     + +L    +L  
Sbjct: 65  LEEAIELRDAGIRLPILVMGGYYGPRRDGFEEIIA-RDLVPVVYDAGQIERLASVVRLEQ 123

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G    + L+VDTG  RLG +  E              +L  +++HLACAD     V   
Sbjct: 124 RGRVGVH-LKVDTGMGRLGAASSEIEAVLATLAKHPEVKLDGLMTHLACADADDLGVTIE 182

Query: 178 QLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q+  F  +    K  G+   +   ++S+ +L  P     + RPG++L+G +     +  +
Sbjct: 183 QMRLFGEIEQRAKSFGLTPRVRHASNSAAMLRLPAALLDIVRPGVALFGISPCAGLAPDL 242

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+   + I+ +R    G+ + YG   + +R+S++A   +GYADG    LS        
Sbjct: 243 KPVIRVRSEIVALRTIAKGDRIGYGHTWQASRESVVATVPMGYADGLSRQLSNR------ 296

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--------IKLD 344
                G   ++G   PI G ++MD+TM D+TD     +GD +   G          I  +
Sbjct: 297 -----GAALVRGQRAPIAGAVSMDLTMLDVTDVPGARLGDEVVFLGTQDGPLGRGTISAE 351

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++A  +GT  +++L  I  R  +FY
Sbjct: 352 EIAGLTGTIAWEVLTSISRRVPRFY 376


>gi|93006286|ref|YP_580723.1| alanine racemase [Psychrobacter cryohalolentis K5]
 gi|92393964|gb|ABE75239.1| alanine racemase [Psychrobacter cryohalolentis K5]
          Length = 368

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 180/370 (48%), Gaps = 25/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I   A+ +N + + AL+  +   A+VK NAYG G   + PAL  A      V ++ E 
Sbjct: 4   ITIKPAAITHNLNQVKALAPKSNVLAMVKANAYGHGVAAVLPALQQA--DGIGVATLREA 61

Query: 69  VKLRLYTPQARIFVLYG---IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHP 123
           ++ R       I ++ G   +   Q+ I  D +   VI   PQL +  + +      +  
Sbjct: 62  LEARQLGWDKTIGLIEGAFTVDEWQQAIEHDISC--VIHHAPQLDWALEQIPPVDSATRM 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++ +TG NRLG + Q  L     S +    QL ++ +H A AD+    +N++Q++RF 
Sbjct: 120 VWIKYNTGMNRLGFNNQ-TLSSAAKSLHDAGYQL-ILTTHFANADNQDHPLNAIQIQRFN 177

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            ++S  +      I+ SL +S+GI+  P +H    RPGI LYG    I++S     +Q  
Sbjct: 178 DMLSTLRQTVSTNIKGSLCNSAGIVNFPEHHHDWVRPGIMLYGSAPVIDQSAYTLNLQPA 237

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   A+II ++   AG+ + YG +    +D   A+ +IGY DGYP  ++G        V 
Sbjct: 238 MEFSAQIIALQTVQAGDAIGYGSRWIAQQDVKTALVSIGYGDGYPRVVNG-----DAYVS 292

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
           +      + Y   ++G++ MDM + D++    S  +   + ++G    +D+VA  + T  
Sbjct: 293 VIDAVNQQRYSCAVIGRVAMDMIVIDVSAVPESSALNSKVILWGDAPHVDEVATHADTIG 352

Query: 355 YDLLVRIGTR 364
           Y+LL R+  R
Sbjct: 353 YELLCRLSVR 362


>gi|225378153|ref|ZP_03755374.1| hypothetical protein ROSEINA2194_03813 [Roseburia inulinivorans DSM
           16841]
 gi|225209959|gb|EEG92313.1| hypothetical protein ROSEINA2194_03813 [Roseburia inulinivorans DSM
           16841]
          Length = 390

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 180/385 (46%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M+ +  +   IDL+A+ +N  +M+  +  + +  AV+K + YG G   IA  + +   V 
Sbjct: 1   MNKHSRVCANIDLSAVMHNMEAMHQNIDPDTKIMAVIKADGYGHGAVPIAKEIEHLDYVY 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117
            +   +VEEG+ LR    Q  I +L  I P Q + +    + P + ++      S     
Sbjct: 61  GYAAATVEEGMILRNNGIQKPILILGYIFPDQYEEVIQAEICPSVFTLEMAKELSAAAEK 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G        VDTG +R+G  + +EA D            +  I +H A AD+       
Sbjct: 121 VGKDCRMHFAVDTGMSRIGYQVTEEAADEMAQIAKLPHMIVEGIFTHFAKADEYDKTFTK 180

Query: 177 VQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINK- 228
            Q+++FR +I+  +    S+     ++S+GI      +  + R GI+LYG   ++++++ 
Sbjct: 181 EQIQKFRKMIAMMEDRGVSIPVKHCSNSAGIAEIREANMDMVRAGITLYGLWPSEEVDQN 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           S  ++ V+  +  +  ++   AG  +SYGG     RDS IA   +GYADGY   LS    
Sbjct: 241 SLDLKPVMELKTHVAYVKDLEAGRAISYGGTFITKRDSRIATIPVGYADGYCRGLSNT-- 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G   PI G++ MD  M D+TD   +++GD + + G D    I ++
Sbjct: 299 ---------GSVLIHGKRAPICGRVCMDQFMVDVTDIPDVKIGDEVTLIGRDGDEVITME 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +V   SG  NY+ +  +G R  + +
Sbjct: 350 EVGSLSGRFNYEFVCVLGKRIPRVF 374


>gi|75765474|pdb|1XFC|A Chain A, The 1.9 A Crystal Structure Of Alanine Racemase From
           Mycobacterium Tuberculosis Contains A Conserved Entryway
           Into The Active Site
 gi|75765475|pdb|1XFC|B Chain B, The 1.9 A Crystal Structure Of Alanine Racemase From
           Mycobacterium Tuberculosis Contains A Conserved Entryway
           Into The Active Site
 gi|5759222|gb|AAD51033.1|AF172731_1 alanine racemase [Mycobacterium tuberculosis]
          Length = 384

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 180/386 (46%), Gaps = 50/386 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E + 
Sbjct: 16  VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 75

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIP----VISSVPQL-TFYSKLMSCGVSH 122
           LR   +  P     VL  +HP    I F   L+      +SS+ QL      +   G + 
Sbjct: 76  LRADGITAP-----VLAWLHP--PGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTA 128

Query: 123 PYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              ++VDTG NR G+   +    L     +  +   +L  ++SH+  AD P   +N VQ 
Sbjct: 129 TVTVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQA 188

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +RF   ++  +  G+    A L++SS  +  P+  F L RPGI++Y G   +     M  
Sbjct: 189 QRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVY-GLSPVPALGDMGL 247

Query: 235 V--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           V  +T +  + L++   AGE VSYG      RD+ +A+  IGYADG              
Sbjct: 248 VPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADG-------------- 293

Query: 293 SVF--LGGK--GFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK----L 343
            VF  LGG+    I G   P +G+I MD  M D+    L +  GD   +FGP I+     
Sbjct: 294 -VFRSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTA 352

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
            D A   GT +Y+++     R  + Y
Sbjct: 353 QDWADLVGTIHYEVVTSPRGRITRTY 378


>gi|170697807|ref|ZP_02888893.1| alanine racemase [Burkholderia ambifaria IOP40-10]
 gi|170137309|gb|EDT05551.1| alanine racemase [Burkholderia ambifaria IOP40-10]
          Length = 373

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 170/357 (47%), Gaps = 27/357 (7%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R  AVVK NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTGF 132
                + +L GI    +  + D + + V     +   +  L++     P  +Q  +++G 
Sbjct: 71  GWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQ--FDLLIAAKPRQPLDIQLKMNSGM 128

Query: 133 NRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191
           NRLG            +     +G+++L++ H A AD+    V+  QL++F    +   G
Sbjct: 129 NRLGYRPHAFRAAWERAAAAPSIGKITLMM-HFANADE--GEVDW-QLDQFDAATAGIPG 184

Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIRK 247
            E S ++S+ +L  P  H    RPG  LYG +      H    P+   +T  ++II ++ 
Sbjct: 185 -ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLTSKIIGVQT 243

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
               E V YG +    R   I V A GYADGYP          +P+   G    + G M 
Sbjct: 244 LAPDETVGYGRRFTADRPMRIGVVACGYADGYP--------RQAPT---GTPIAVDGVMT 292

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 293 RVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCALARR 349


>gi|61218413|sp|P0A4X2|ALR_MYCTU RecName: Full=Alanine racemase
 gi|61218415|sp|P0A4X3|ALR_MYCBO RecName: Full=Alanine racemase
          Length = 386

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 180/386 (46%), Gaps = 50/386 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E + 
Sbjct: 18  VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 77

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIP----VISSVPQL-TFYSKLMSCGVSH 122
           LR   +  P     VL  +HP    I F   L+      +SS+ QL      +   G + 
Sbjct: 78  LRADGITAP-----VLAWLHP--PGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTA 130

Query: 123 PYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              ++VDTG NR G+   +    L     +  +   +L  ++SH+  AD P   +N VQ 
Sbjct: 131 TVTVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQA 190

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +RF   ++  +  G+    A L++SS  +  P+  F L RPGI++Y G   +     M  
Sbjct: 191 QRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVY-GLSPVPALGDMGL 249

Query: 235 V--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           V  +T +  + L++   AGE VSYG      RD+ +A+  IGYADG              
Sbjct: 250 VPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADG-------------- 295

Query: 293 SVF--LGGK--GFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK----L 343
            VF  LGG+    I G   P +G+I MD  M D+    L +  GD   +FGP I+     
Sbjct: 296 -VFRSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTA 354

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
            D A   GT +Y+++     R  + Y
Sbjct: 355 QDWADLVGTIHYEVVTSPRGRITRTY 380


>gi|331002036|ref|ZP_08325556.1| alanine racemase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411832|gb|EGG91237.1| alanine racemase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 392

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 182/380 (47%), Gaps = 37/380 (9%)

Query: 10  KIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           K+DL A+K+N   +  AL  N + AAVVK + YG G   +  +L+   + DFF V ++EE
Sbjct: 10  KVDLDAIKHNLMITKQALKENMKLAAVVKADGYGHG--SVPVSLHIKDIVDFFCVATLEE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPY 124
           G+ LR +     I +L  I     +E I+FD    +  +    ++   +K M  G     
Sbjct: 68  GINLRYHGITKPILILACIPRSSYKESIVFDIRESVFTLEQAKKINDEAKEM--GKKMSI 125

Query: 125 ALQVDTGFNRLGLS-LQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            + +DTG NR+G    +E+ D   T N  N    ++  I +H   AD+        Q E 
Sbjct: 126 HIAIDTGMNRIGFKPTKESADIIKTINEMNNI--EIEGIFTHFHSADEIDLTSAKRQEEL 183

Query: 182 FRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN-KSHPMQ 233
           F   +   +  GIE  +   ++S+ I+        + R GI++YG   ++++N KS   +
Sbjct: 184 FLEFLDMLRNMGIEPKITHASNSAAIVNNIGTQLDMVRCGITMYGVSPSNEVNLKSFDYR 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++  + I  I++  AGE VSYG   K  +D  IA  + GYADGYP  LS         
Sbjct: 244 PALSIYSTITYIKEIKAGECVSYGAIFKAEKDMNIATISFGYADGYPRDLSN-------- 295

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
               G   I G    ILG+I MD T+ D+++   +E+GD + I G      I ++++   
Sbjct: 296 ---KGYVLIHGVKCRILGRICMDQTIVDVSNIPKVEIGDTVVILGESEDSKITVEELTKD 352

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           S T +Y+ +  I  R  + Y
Sbjct: 353 SNTFSYEFICGINKRVPRLY 372


>gi|20137249|sp|Q9RVE3|ALR_DEIRA RecName: Full=Alanine racemase
          Length = 351

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 17/245 (6%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L+VDTG NRLG    +A+        +  GQL  + +H A AD+P       QL RFR++
Sbjct: 118 LKVDTGMNRLGARPADAVAVGRALAER--GQLEGVYTHFATADEPDLSFALTQLVRFRSV 175

Query: 186 ISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGT-DKINKSHPMQTVVTAEARII 243
           +     + A  A+  G+L  G      L RPG++ YG   + +     ++ V+T  AR+ 
Sbjct: 176 LDALPPVLAHCANGGGVLSFGRIEGMSLARPGLAAYGYVPEHLRHVCALRPVMTVRARVN 235

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +  A  GE VSYG   +  R++ +AV  +GYADGYP   +G       +V +GG+    
Sbjct: 236 QLHTAYPGETVSYGALWRAERETGVAVVGMGYADGYPRNATG-----RAAVLIGGE---- 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIG 362
               P+LG+I MD  M D+T  L + VGD+ +++G  D+ + DVA    T  Y++L  +G
Sbjct: 287 --RRPVLGRICMDQMMVDVT-GLDVGVGDWAELWGEGDLSVTDVARWGDTIEYEVLTGLG 343

Query: 363 TRYAK 367
           +R  +
Sbjct: 344 SRVER 348


>gi|308406153|ref|ZP_07495313.2| alanine racemase alr [Mycobacterium tuberculosis SUMu012]
 gi|308364367|gb|EFP53218.1| alanine racemase alr [Mycobacterium tuberculosis SUMu012]
          Length = 370

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 180/386 (46%), Gaps = 50/386 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E + 
Sbjct: 2   VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 61

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIP----VISSVPQL-TFYSKLMSCGVSH 122
           LR   +  P     VL  +HP    I F   L+      +SS+ QL      +   G + 
Sbjct: 62  LRADGITAP-----VLAWLHP--PGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTA 114

Query: 123 PYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              ++VDTG NR G+   +    L     +  +   +L  ++SH+  AD P   +N VQ 
Sbjct: 115 TVTVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQA 174

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +RF   ++  +  G+    A L++SS  +  P+  F L RPGI++Y G   +     M  
Sbjct: 175 QRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVY-GLSPVPALGDMGL 233

Query: 235 V--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           V  +T +  + L++   AGE VSYG      RD+ +A+  IGYADG              
Sbjct: 234 VPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADG-------------- 279

Query: 293 SVF--LGGK--GFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK----L 343
            VF  LGG+    I G   P +G+I MD  M D+    L +  GD   +FGP I+     
Sbjct: 280 -VFRSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTA 338

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
            D A   GT +Y+++     R  + Y
Sbjct: 339 QDWADLVGTIHYEVVTSPRGRITRTY 364


>gi|238022968|ref|ZP_04603394.1| hypothetical protein GCWU000324_02890 [Kingella oralis ATCC 51147]
 gi|237865776|gb|EEP66914.1| hypothetical protein GCWU000324_02890 [Kingella oralis ATCC 51147]
          Length = 351

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 177/368 (48%), Gaps = 24/368 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L  +I L  L++N+  + AL GN +  AV+K NAYG G  + A AL++A    F V  +E
Sbjct: 4   LTCEIRLDYLRDNYQYLKALHGN-KLLAVMKANAYGHGAVQCARALHDA-ADGFAVAFLE 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E V+LR       I VL G+    +   + +  L PV+    QL     L++     P  
Sbjct: 62  EAVELREAGITKPIVVLEGVFQAADYAAVAEYRLWPVVHCQAQL---EGLLAFDWREPAT 118

Query: 126 --LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++D+G +R G      A  F     + K+G++ + +SH ACAD+    +  +QLE F
Sbjct: 119 VWLKMDSGMHRTGFFPHNYAAAFAALRQSGKVGEI-VKMSHFACADETERGMTQMQLEAF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
               +   G E SLA+S+ I+  P       R G++LYG       S  ++ V+  ++ +
Sbjct: 178 DLACAGLDGAE-SLANSAAIMAYPEARRDWGRAGLALYGVDPFGAFSGSLKPVMRLKSEV 236

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
              R     E + YG      R + +   A GYADGYP   +      +P         I
Sbjct: 237 FAERVLQPHEPIGYGASFYTKRSTRVGAVAGGYADGYPRRAA----SDTPVA-------I 285

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+I+MDM   D+  +  + VG  +++FG  I +++VA A+GT  Y++L  + 
Sbjct: 286 DGVRSRLIGRISMDMLTVDLQQA-DMGVGSEVELFGDIISVNEVAAAAGTIAYEVLCNV- 343

Query: 363 TRYAKFYT 370
            R  + Y+
Sbjct: 344 KRAKRVYS 351


>gi|73541623|ref|YP_296143.1| alanine racemase [Ralstonia eutropha JMP134]
 gi|72119036|gb|AAZ61299.1| Alanine racemase region [Ralstonia eutropha JMP134]
          Length = 373

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 159/361 (44%), Gaps = 22/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   A+ NN   +   +  +R  AV+K NAYG G  ++   L   G   F +  + E V+
Sbjct: 9   IHQPAIANNLEVVRRHAPGSRVWAVIKANAYGHGIRRVFAGLR--GTDGFGLLDLNEAVQ 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           LR    Q  I +L G   P    ++    L   +    QL         G   P A+Q+ 
Sbjct: 67  LRDLGWQGPILLLEGFFQPQDVPLLEQYRLTTAVHCDEQLRMLESARPKG---PLAIQLK 123

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            +TG NRLG    +       +         + ++H + AD P    +  Q+E F    +
Sbjct: 124 LNTGMNRLGFHPSQYRTAWERARAMPCVGSIVHMTHFSDADTPRGIAH--QIEAFDKATA 181

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARII 243
           +  G EASL++S+ +L  P  H    RPG+ LYG +    ++      +Q  ++  + +I
Sbjct: 182 NLPG-EASLSNSAAVLWHPEAHRAWVRPGVILYGASPTGREADIAGVGLQPAMSLHSELI 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            ++    G+ V YG      R   I V A GYADGYP   +G     +P         + 
Sbjct: 241 AVQDLQPGDTVGYGSMFTADRPMRIGVVACGYADGYPRHATGWGEHRAPV-------LVD 293

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ++G+++MDM   D+       +G  + ++G  + +DDVA ASGT  Y+L+  +  
Sbjct: 294 GVRTQLVGRVSMDMLCVDLGPCPKARIGSPVTLWGQGLPIDDVAQASGTVGYELMCALAP 353

Query: 364 R 364
           R
Sbjct: 354 R 354


>gi|330721327|gb|EGG99406.1| Alanine racemase2C catabolic [gamma proteobacterium IMCC2047]
          Length = 334

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 158/341 (46%), Gaps = 19/341 (5%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-K 92
           A++K +AYG G E+ A AL N+      V  ++E + LR       I +L G    +E +
Sbjct: 2   AMLKADAYGHGAEQAALAL-NSYTDAIAVAFIDEAIALREAGINKPITLLQGTFDEREIE 60

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFN 151
           +     L  V+    Q     +    G      L+ D+G +RLG S  E A  +   S +
Sbjct: 61  LACQYTLDLVVLHGEQAEML-EAADPGCQLTVWLKFDSGMHRLGFSADEYAYWYERLSKH 119

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
             + ++ L+ +H +CAD+P + V   Q   F            SLA+S+ I+  P+    
Sbjct: 120 PNVAEVRLM-THFSCADEPENPVTKEQEALFDKKTKGLSCTTYSLANSAAIMAWPSTLRD 178

Query: 212 LTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
             RPG+ LYG     D       ++ V+T +  II  R   AGE V YG     +    I
Sbjct: 179 WVRPGVMLYGVCPFADWRENHRDLRPVMTLKTVIISTRTLEAGEAVGYGRSWVASEKCRI 238

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
            VA+IGYADGYP  L             G    + G  V ++G++TMDM   D+T    +
Sbjct: 239 GVASIGYADGYPRCLPN-----------GTPVLVNGQRVSMVGRVTMDMITLDLTGVADV 287

Query: 329 EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +VGD + ++G  + ++++A  +GT  Y+LL  +  R  + Y
Sbjct: 288 KVGDEVTLWGEGLAVEEIAEYAGTIAYELLTGVSKRVPRIY 328


>gi|167036911|ref|YP_001664489.1| alanine racemase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039616|ref|YP_001662601.1| alanine racemase [Thermoanaerobacter sp. X514]
 gi|256751517|ref|ZP_05492394.1| alanine racemase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300915134|ref|ZP_07132449.1| alanine racemase [Thermoanaerobacter sp. X561]
 gi|307725058|ref|YP_003904809.1| alanine racemase [Thermoanaerobacter sp. X513]
 gi|320115330|ref|YP_004185489.1| alanine racemase [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853856|gb|ABY92265.1| alanine racemase [Thermoanaerobacter sp. X514]
 gi|166855745|gb|ABY94153.1| alanine racemase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749601|gb|EEU62628.1| alanine racemase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300888858|gb|EFK84005.1| alanine racemase [Thermoanaerobacter sp. X561]
 gi|307582119|gb|ADN55518.1| alanine racemase [Thermoanaerobacter sp. X513]
 gi|319928421|gb|ADV79106.1| alanine racemase [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 388

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 174/391 (44%), Gaps = 55/391 (14%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R +I L  + +N   +    G   +   VVK NAYG G  ++A  L   GV    V ++E
Sbjct: 9   RAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACQVAKVLIENGVSYLGVATIE 68

Query: 67  EGVKLRL-----------YTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
           E ++LR            YTP  QA+  +++ I     + +FD N +  +  +       
Sbjct: 69  EALELRECGINIPILVFGYTPLPQAKELIVHNI----TQTVFDINYVKDLERIA------ 118

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG----QLSLIISHLACADD 169
             ++ G      ++VDTG  R+G +    L+       K +     ++  I SH A +D+
Sbjct: 119 --LNVGKKAKVHVKVDTGMGRIGYT---DLNVAEKEIEKMMEMEGVEVEGIFSHFATSDE 173

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLA----SSSGILLGPNY-HFQLTRPGISLYGGTD 224
                   Q + F+ L+   K  E ++     ++SG ++   Y +  + RPGI LYG   
Sbjct: 174 KDKTYAEQQFDMFKKLLESLKQKEINIPLKHIANSGAIIDLKYTYLDMVRPGIVLYGSYP 233

Query: 225 KINKSHPMQTVVTA--EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             N   P+    T   + +I+ I++   G  +SYG      R S IA   +GYADG+   
Sbjct: 234 SENVERPLDLRQTMGFKTKIVYIKEVPEGTSISYGRTFITKRKSKIATLPVGYADGFNRL 293

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----G 338
           LS  ++ H           +KG   P++G+I MD TM D+TD   +EVGD + IF    G
Sbjct: 294 LS--NNHHV---------LVKGKYAPVIGRICMDQTMLDVTDIEGVEVGDDVTIFGNQDG 342

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             I  +++A    T  Y++   I  R  + Y
Sbjct: 343 EKITAEEIAKKLNTIPYEVYCGISRRVPRIY 373


>gi|126207740|ref|YP_001052965.1| alanine racemase [Actinobacillus pleuropneumoniae L20]
 gi|166919545|sp|A3MYX4|ALR_ACTP2 RecName: Full=Alanine racemase
 gi|126096532|gb|ABN73360.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 374

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 177/378 (46%), Gaps = 41/378 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  + E ++
Sbjct: 8   ISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVARLREALE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDTNL-----IPVISSVP-------QLTFYS 113
           ++      +I ++ G    +E +      FDT +     + ++  V        Q  F+ 
Sbjct: 67  IQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAEEWQQEQQKGFWK 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACAD 168
           +           L++DTG +RLG+  ++      + F ++L    L+     +SH + AD
Sbjct: 127 RKAKIYFPINVWLKIDTGMHRLGVHPEQV-----DMFYQRLKACPLVESISFVSHFSRAD 181

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
           +P       Q+  F    S Y   E S+++SSGIL     H+   RPGI ++G +     
Sbjct: 182 EPDCGYTEKQIAIFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYTP 241

Query: 229 SHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP      
Sbjct: 242 ITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGTWISDKDTKLGVVAMGYGDGYP------ 295

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
              ++P    G    + G +VPI+G+++MDM   D+      +VGD +  +G D+ +++V
Sbjct: 296 --RNAPE---GTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEEV 350

Query: 347 ALASGTTNYDLLVRIGTR 364
           A   G  +Y+L+ ++  R
Sbjct: 351 AQHIGVISYELITKLTPR 368


>gi|326692184|ref|ZP_08229189.1| alanine racemase [Leuconostoc argentinum KCTC 3773]
          Length = 375

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 178/390 (45%), Gaps = 40/390 (10%)

Query: 2   HSNEFLRLK-----IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           +SNE L ++     +DL A++ N   + A +G  R  AVVK +AYG G   +  ALY  G
Sbjct: 3   NSNELLMMRPSWLTVDLAAIQYNAKQIMAHAGAIRLIAVVKADAYGHGAVAVTTALYEIG 62

Query: 57  VQDFFVTSVEEGVKLRLYTPQARI-FVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSK 114
           V+DF V ++ EGV LR   P      +L G+   Q   ++    L P + ++  L    +
Sbjct: 63  VRDFAVATIAEGVALRQQVPYDDFNIILLGVQDVQYVPVMVSQRLTPAVGTLAWLDEAEQ 122

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSH 173
           L++        L VDTG  R+G   + AL   ++   +    QLS + +H A ADD +  
Sbjct: 123 LLNSDDQLMIQLAVDTGMGRMGAHSEAALQEMYDKVLDTPSLQLSGVFTHFATADDTNQA 182

Query: 174 VNSVQLERFRTLISHYKGIEAS---LASSSGILLGPNYHFQLT----RPGISLYG---GT 223
               Q+  F   ++   GI      LA+S   L    +H Q+     R G  LYG   G 
Sbjct: 183 YYDQQVANFNAWVTAV-GIPKQYWHLANSGSALW---HHDQIETGTIRVGSVLYGYNPGA 238

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
            ++     ++ V++ ++RI  + +  AGE VSYG     T    +A   IGYADGY   +
Sbjct: 239 PELPMPVALKNVLSLKSRIGAVHQLQAGESVSYGATYTATEPQWVATLPIGYADGYLRRM 298

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
            G+               + G+   ++G++TMD  +  IT      VG  + + G D   
Sbjct: 299 GGMTV------------LVNGHEEKVIGRVTMDQIV--ITLDRDYPVGTVVTLIGQDGDA 344

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I ++D A  + T  +++L   G R  + Y
Sbjct: 345 EITVEDFAQYAQTIPHEILTTFGPRLPRIY 374


>gi|15806106|ref|NP_294810.1| alanine racemase [Deinococcus radiodurans R1]
 gi|6458816|gb|AAF10657.1|AE001958_11 alanine racemase [Deinococcus radiodurans R1]
          Length = 367

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 17/245 (6%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L+VDTG NRLG    +A+        +  GQL  + +H A AD+P       QL RFR++
Sbjct: 134 LKVDTGMNRLGARPADAVAVGRALAER--GQLEGVYTHFATADEPDLSFALTQLVRFRSV 191

Query: 186 ISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGT-DKINKSHPMQTVVTAEARII 243
           +     + A  A+  G+L  G      L RPG++ YG   + +     ++ V+T  AR+ 
Sbjct: 192 LDALPPVLAHCANGGGVLSFGRIEGMSLARPGLAAYGYVPEHLRHVCALRPVMTVRARVN 251

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +  A  GE VSYG   +  R++ +AV  +GYADGYP   +G       +V +GG+    
Sbjct: 252 QLHTAYPGETVSYGALWRAERETGVAVVGMGYADGYPRNATG-----RAAVLIGGE---- 302

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIG 362
               P+LG+I MD  M D+T  L + VGD+ +++G  D+ + DVA    T  Y++L  +G
Sbjct: 303 --RRPVLGRICMDQMMVDVT-GLDVGVGDWAELWGEGDLSVTDVARWGDTIEYEVLTGLG 359

Query: 363 TRYAK 367
           +R  +
Sbjct: 360 SRVER 364


>gi|190149523|ref|YP_001968048.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189914654|gb|ACE60906.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 374

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 177/378 (46%), Gaps = 41/378 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  + E ++
Sbjct: 8   ISREALRHNIELIKTFTPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVARLREALE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDTNL-----IPVISSVP-------QLTFYS 113
           ++      +I ++ G    +E +      FDT +     + ++  V        Q  F+ 
Sbjct: 67  IQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAKEWQQEQQKGFWK 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACAD 168
           +           L++DTG +RLG+  ++      + F ++L    L+     +SH + AD
Sbjct: 127 RKAKIYFPINVWLKIDTGMHRLGVHPEKV-----DMFYQRLKACPLVESISFVSHFSRAD 181

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
           +P       Q+  F    S Y   E S+++SSGIL     H+   RPGI ++G +     
Sbjct: 182 EPDCGYTEKQIAVFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYTP 241

Query: 229 SHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP      
Sbjct: 242 ITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYP------ 295

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
              ++P    G    + G +VPI+G+++MDM   D+      +VGD +  +G D+ +++V
Sbjct: 296 --RNAPE---GTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEEV 350

Query: 347 ALASGTTNYDLLVRIGTR 364
           A   G  +Y+L+ ++  R
Sbjct: 351 AQHIGVISYELITKLTPR 368


>gi|85059320|ref|YP_455022.1| alanine racemase [Sodalis glossinidius str. 'morsitans']
 gi|123519392|sp|Q2NTA8|ALR_SODGM RecName: Full=Alanine racemase
 gi|84779840|dbj|BAE74617.1| alanine racemase [Sodalis glossinidius str. 'morsitans']
          Length = 356

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 171/365 (46%), Gaps = 32/365 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           K+D   L +N   +   +  A+  +VVK N YG G   +   L       F +  + E V
Sbjct: 8   KVDSAVLASNLSIVRRHAPQAQVWSVVKANGYGHGLNTVWQGLQQ--TDGFALLDLHEAV 65

Query: 70  KLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    +  I +L G   P    +I    L  V+ S  Q+    ++        Y L++
Sbjct: 66  VLREKGWRGPILLLEGFFQPADLAVIDRYRLTTVVHSDWQIEALRRMTPRAPLDIY-LKL 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++G NRLG S + AL     S N  K +  L+L+ SH A AD P        +E    ++
Sbjct: 125 NSGMNRLGFS-ERALPGAWQSLNALKHVATLTLM-SHFAYADMPEG------VEGQMAVV 176

Query: 187 SHY-KGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
           +   +G+     LA+S+  L  P  H Q  RPGI LYG +   N     +  ++ V+T +
Sbjct: 177 ARAGEGLTGPRCLANSAATLWHPATHGQWVRPGIILYGASPSGNWQDIAASGLRPVMTLQ 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++   AG  + YGG+ +++    + V A GYADGYP         H+P+   G  
Sbjct: 237 SELIAVQSVPAGGRIGYGGRHRVSETHRVGVVACGYADGYP--------RHAPT---GTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     LG ++MDM M D+       +G  ++++G  +K+D+VA ++GT  Y+L+ 
Sbjct: 286 ILVDGVRTSTLGAVSMDMLMVDLQLCPKARIGSAVELWGDHVKIDEVAASAGTLGYELMS 345

Query: 360 RIGTR 364
            +  R
Sbjct: 346 ALAPR 350


>gi|167589682|ref|ZP_02382070.1| alanine racemase [Burkholderia ubonensis Bu]
          Length = 377

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 172/359 (47%), Gaps = 33/359 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   A+++N   +      +R  AVVK NAYG G E+I P L  A      +  ++E V+
Sbjct: 9   IRPAAVRHNLEFIRRTVAPSRVWAVVKANAYGHGIERIYPGL--AAADGIALLDLDEAVR 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           +R       + +L GI  P   ++     L   +    QL     L++     P  +Q  
Sbjct: 67  VRALGWDKPVLLLEGIFEPADVELAEHHRLTVAVHCDAQLDL---LIAAKPQRPIDIQLK 123

Query: 128 VDTGFNRLG---LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++G NRLG    + + A +    +    +G+++L+ +H A AD+        QL++F  
Sbjct: 124 MNSGMNRLGYRPAAFRAAWERAAGA--PSIGKITLM-THFANADEGEI---DWQLDQFDA 177

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240
             +   G E S+++S+ +L  P  H    RPG  LYG +      H    P+   +T  +
Sbjct: 178 ATAGMPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLIAAMTLTS 236

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II ++     E V YG +    +   I V A GYADGYP         H+P+   G   
Sbjct: 237 KIIGVQTLAPQETVGYGRRFAADQPMRIGVVACGYADGYP--------RHAPT---GTPI 285

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            + G +  ++G+++MDM   D+T   +  +G +++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 286 AVDGMLTRVVGRVSMDMLTVDLTPCPNAGIGSHVELWGDQVKVDDVAEASGTIGYELMC 344


>gi|165975710|ref|YP_001651303.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303251626|ref|ZP_07337799.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303252778|ref|ZP_07338938.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247237|ref|ZP_07529287.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307251781|ref|ZP_07533684.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307260709|ref|ZP_07542399.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307262841|ref|ZP_07544466.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|165875811|gb|ABY68859.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302648339|gb|EFL78535.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302649468|gb|EFL79651.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306856295|gb|EFM88448.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306860782|gb|EFM92792.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306869630|gb|EFN01417.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306871856|gb|EFN03575.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 374

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 177/378 (46%), Gaps = 41/378 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  + E ++
Sbjct: 8   ISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVARLREALE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDTNL-----IPVISSVP-------QLTFYS 113
           ++      +I ++ G    +E +      FDT +     + ++  V        Q  F+ 
Sbjct: 67  IQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAKEWQQEQQKGFWK 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACAD 168
           +           L++DTG +RLG+  ++      + F ++L    L+     +SH + AD
Sbjct: 127 RKAKIYFPINVWLKIDTGMHRLGVHPEKV-----DMFYQRLKACPLVESISFVSHFSRAD 181

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
           +P       Q+  F    S Y   E S+++SSGIL     H+   RPGI ++G +     
Sbjct: 182 EPDCGYTEKQIAVFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYTP 241

Query: 229 SHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP      
Sbjct: 242 ITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYP------ 295

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
              ++P    G    + G +VPI+G+++MDM   D+      +VGD +  +G D+ +++V
Sbjct: 296 --RNAPE---GTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEEV 350

Query: 347 ALASGTTNYDLLVRIGTR 364
           A   G  +Y+L+ ++  R
Sbjct: 351 AQHIGVISYELITKLTPR 368


>gi|150402682|ref|YP_001329976.1| alanine racemase [Methanococcus maripaludis C7]
 gi|150033712|gb|ABR65825.1| alanine racemase [Methanococcus maripaludis C7]
          Length = 373

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 170/379 (44%), Gaps = 35/379 (9%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL+A+KNN   +  ++   ++  AVVK NAYG G  +++      G     V    E 
Sbjct: 9   EIDLSAIKNNIQEIRRITNPKSQVMAVVKANAYGHGAIEVSKVCLENGADRLAVARSTEA 68

Query: 69  VKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I V  Y      EK++ +   + V S     +        G      ++
Sbjct: 69  LELRNAGITCPILVFGYCTEEEIEKMVENDITLTVYSFETAESIQKIAEKLGKHSKIHIK 128

Query: 128 VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VDTG  RLG L  +EA++        K  ++  I +H A AD+      ++Q  RF   +
Sbjct: 129 VDTGMGRLGFLPKKEAIETIKKIMELKNIKIEGIYTHFADADNSDKSYTTMQFSRFTNFL 188

Query: 187 SHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHPMQT 234
            + +  E  +     ++S+ I+  P  H  L RPGI LYG         ++IN    ++ 
Sbjct: 189 HNLEENEIFIPIKHASNSAAIIDHPETHLNLVRPGIILYGLYPSELVHKERIN----LKP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ +  I  +++      +SYG   +  + S IA   IGYADG+   L           
Sbjct: 245 AMSLKVLITHVKEVPENTKISYGCTFETKKPSKIASLPIGYADGFTRMLKD--------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   I G  VP++G+I MD  M D++D  +++VGD + IFG      I +++     
Sbjct: 296 ---GYVLIHGSRVPVIGRICMDQCMIDVSDIENVQVGDVVTIFGTQENEKIPIEEFGEKL 352

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+L+  +  R  + Y
Sbjct: 353 GTINYELVCMVAGRVPRKY 371


>gi|269216099|ref|ZP_06159953.1| alanine racemase [Slackia exigua ATCC 700122]
 gi|269130358|gb|EEZ61436.1| alanine racemase [Slackia exigua ATCC 700122]
          Length = 435

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 176/382 (46%), Gaps = 33/382 (8%)

Query: 9   LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL A+++N + +   L    R  AVVK + YG G  ++A    +AG     V +V+E
Sbjct: 64  VEIDLGAIRHNTYANKRCLKPGTRLMAVVKADGYGHGAVQVARTALSAGASQLAVATVDE 123

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           G++LR     A I +L         ++   +++P + +      Y++L    G+  PY L
Sbjct: 124 GIELRRAGIAAPILILSEPPASAAPLLLQHDIMPSVYTPEFAIAYAELADAHGMRAPYHL 183

Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            ++TG NR+G+   EA++F    SF++ L Q+    +H A AD   +   ++Q  RF   
Sbjct: 184 ALNTGMNRIGVRHDEAVEFARQISFHRALDQVG-TFTHFATADCAETLDFNLQFRRFADA 242

Query: 186 ISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           I   +  GI+  +   A+S+ +L  P  H  + R GISLYG     +   +  ++  ++ 
Sbjct: 243 IEGMRVAGIDPGIVHCANSAALLRYPETHMDMVRMGISLYGFHPCPETRGAAVLKPAMSV 302

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ARI  +      E V YG   + T    I    +GYADG+   LSG         F+ G
Sbjct: 303 HARITAVNAPQLSEGVGYGLHYRSTGSVRICTVPVGYADGFARALSGRTD------FIYG 356

Query: 299 KGFIKGYMVPILGKITMDMTMFDI-------TDSLSIEVGDYIQIFGP----DIKLDDVA 347
                G     +G I MD +MF++          L  +VGD + + G      + ++++ 
Sbjct: 357 -----GRRCHQVGNICMDQSMFEVDMRSLGTRPRLDPQVGDEVVVIGEKDGLSVGVEELC 411

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT  Y++   +  R  K Y
Sbjct: 412 DVLGTIPYEVCCALAMRMPKVY 433


>gi|91784141|ref|YP_559347.1| alanine racemase [Burkholderia xenovorans LB400]
 gi|91688095|gb|ABE31295.1| Alanine racemase [Burkholderia xenovorans LB400]
          Length = 356

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 167/366 (45%), Gaps = 28/366 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L   I  +AL NN       +  ++  AVVK NAYG G  ++ P L       F +  +E
Sbjct: 5   LSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARVFPGLR--ATDGFGLLDLE 62

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E VKLR       I +L G   P    +I   +L   + S  QL     L    +S P  
Sbjct: 63  EAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRM---LEMARLSKPVN 119

Query: 126 LQ--VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +Q  ++TG NRLG + ++    +      + +GQ++L+ +H + AD         Q+E F
Sbjct: 120 IQLKMNTGMNRLGYTPEKFRAAWERARAAQGVGQITLM-THFSDAD--GDRGVDYQVEAF 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTA 238
                   G   SLA+S+  L  P  HF   RPGI LYG    G     +   +Q  +T 
Sbjct: 177 ERGAQGIAGAR-SLANSAATLWHPATHFDWVRPGIILYGASPSGVTAAIEGTGLQPAMTF 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I ++    G  V YG   K      I V A GYADGYP     +  E +P +    
Sbjct: 236 ASELIAVQTLHEGHTVGYGSSFKARGSMRIGVVACGYADGYPR----VAPEGTPVI---- 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              ++G    I+G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+
Sbjct: 288 ---VEGVRTRIVGRVSMDMLTVDLTPIPTANVGSRVELWGNALPIDDVAQACGTIGYELM 344

Query: 359 VRIGTR 364
             +  R
Sbjct: 345 CAVAPR 350


>gi|78062814|ref|YP_372722.1| alanine racemase [Burkholderia sp. 383]
 gi|77970699|gb|ABB12078.1| Alanine racemase [Burkholderia sp. 383]
          Length = 373

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 33/360 (9%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R   VVK +AYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAAQSRVWGVVKADAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L GI  P   ++     L   +    QL     L++     P  +Q  +++G
Sbjct: 71  GWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQLDL---LIAARPQQPIDIQLKMNSG 127

Query: 132 FNRLG---LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
            NRLG    + + A +   ++    +G+++L++ H A AD+    V+  QL++F    + 
Sbjct: 128 MNRLGYRPAAFRAAWERAASA--PSIGKITLMM-HFANADE--GEVDW-QLDQFDATTAG 181

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIIL 244
             G E S ++S+ +L  P  H    RPG  LYG    G  +     P+   +T  ++II 
Sbjct: 182 IPG-ERSTSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARDIADTPLMAAMTLTSKIIG 240

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++     E V YG +    R   I V A GYADGYP         H+P+   G    + G
Sbjct: 241 VQTLSPEETVGYGRRFTADRPMRIGVVACGYADGYP--------RHAPT---GTPIAVDG 289

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 290 VMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCALARR 349


>gi|15610559|ref|NP_217940.1| alanine racemase [Mycobacterium tuberculosis H37Rv]
 gi|15843019|ref|NP_338056.1| alanine racemase [Mycobacterium tuberculosis CDC1551]
 gi|31794604|ref|NP_857097.1| alanine racemase [Mycobacterium bovis AF2122/97]
 gi|121639348|ref|YP_979572.1| alanine racemase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663287|ref|YP_001284810.1| alanine racemase [Mycobacterium tuberculosis H37Ra]
 gi|148824630|ref|YP_001289384.1| alanine racemase [Mycobacterium tuberculosis F11]
 gi|167968690|ref|ZP_02550967.1| alanine racemase [Mycobacterium tuberculosis H37Ra]
 gi|215405459|ref|ZP_03417640.1| alanine racemase [Mycobacterium tuberculosis 02_1987]
 gi|215413331|ref|ZP_03422016.1| alanine racemase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428925|ref|ZP_03426844.1| alanine racemase [Mycobacterium tuberculosis T92]
 gi|215432390|ref|ZP_03430309.1| alanine racemase [Mycobacterium tuberculosis EAS054]
 gi|215447752|ref|ZP_03434504.1| alanine racemase [Mycobacterium tuberculosis T85]
 gi|218755205|ref|ZP_03534001.1| alanine racemase [Mycobacterium tuberculosis GM 1503]
 gi|219559485|ref|ZP_03538561.1| alanine racemase [Mycobacterium tuberculosis T17]
 gi|224991844|ref|YP_002646533.1| putative alanine racemase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800470|ref|YP_003033471.1| alanine racemase alr [Mycobacterium tuberculosis KZN 1435]
 gi|254234024|ref|ZP_04927349.1| alanine racemase alr [Mycobacterium tuberculosis C]
 gi|254366033|ref|ZP_04982078.1| alanine racemase alr [Mycobacterium tuberculosis str. Haarlem]
 gi|260188477|ref|ZP_05765951.1| alanine racemase [Mycobacterium tuberculosis CPHL_A]
 gi|260202499|ref|ZP_05769990.1| alanine racemase [Mycobacterium tuberculosis T46]
 gi|260206790|ref|ZP_05774281.1| alanine racemase [Mycobacterium tuberculosis K85]
 gi|289444919|ref|ZP_06434663.1| alanine racemase [Mycobacterium tuberculosis T46]
 gi|289449122|ref|ZP_06438866.1| alanine racemase alr [Mycobacterium tuberculosis CPHL_A]
 gi|289555698|ref|ZP_06444908.1| alanine racemase alr [Mycobacterium tuberculosis KZN 605]
 gi|289571648|ref|ZP_06451875.1| alanine racemase alr [Mycobacterium tuberculosis T17]
 gi|289576156|ref|ZP_06456383.1| alanine racemase alr [Mycobacterium tuberculosis K85]
 gi|289747252|ref|ZP_06506630.1| alanine racemase alr [Mycobacterium tuberculosis 02_1987]
 gi|289752142|ref|ZP_06511520.1| alanine racemase alr [Mycobacterium tuberculosis T92]
 gi|289755553|ref|ZP_06514931.1| alanine racemase [Mycobacterium tuberculosis EAS054]
 gi|289759583|ref|ZP_06518961.1| alanine racemase alr [Mycobacterium tuberculosis T85]
 gi|289763606|ref|ZP_06522984.1| alanine racemase alr [Mycobacterium tuberculosis GM 1503]
 gi|294995803|ref|ZP_06801494.1| alanine racemase [Mycobacterium tuberculosis 210]
 gi|297636085|ref|ZP_06953865.1| alanine racemase [Mycobacterium tuberculosis KZN 4207]
 gi|297733085|ref|ZP_06962203.1| alanine racemase [Mycobacterium tuberculosis KZN R506]
 gi|298526906|ref|ZP_07014315.1| D-alanine racemase [Mycobacterium tuberculosis 94_M4241A]
 gi|313660416|ref|ZP_07817296.1| alanine racemase [Mycobacterium tuberculosis KZN V2475]
 gi|1449364|emb|CAB01033.1| ALANINE RACEMASE ALR [Mycobacterium tuberculosis H37Rv]
 gi|13883361|gb|AAK47870.1| D-alanine racemase [Mycobacterium tuberculosis CDC1551]
 gi|31620201|emb|CAD95644.1| PROBABLE ALANINE RACEMASE ALR [Mycobacterium bovis AF2122/97]
 gi|121494996|emb|CAL73482.1| Probable alanine racemase alr [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124599553|gb|EAY58657.1| alanine racemase alr [Mycobacterium tuberculosis C]
 gi|134151546|gb|EBA43591.1| alanine racemase alr [Mycobacterium tuberculosis str. Haarlem]
 gi|148507439|gb|ABQ75248.1| alanine racemase [Mycobacterium tuberculosis H37Ra]
 gi|148723157|gb|ABR07782.1| alanine racemase alr [Mycobacterium tuberculosis F11]
 gi|224774959|dbj|BAH27765.1| putative alanine racemase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321973|gb|ACT26576.1| alanine racemase alr [Mycobacterium tuberculosis KZN 1435]
 gi|289417838|gb|EFD15078.1| alanine racemase [Mycobacterium tuberculosis T46]
 gi|289422080|gb|EFD19281.1| alanine racemase alr [Mycobacterium tuberculosis CPHL_A]
 gi|289440330|gb|EFD22823.1| alanine racemase alr [Mycobacterium tuberculosis KZN 605]
 gi|289540587|gb|EFD45165.1| alanine racemase alr [Mycobacterium tuberculosis K85]
 gi|289545402|gb|EFD49050.1| alanine racemase alr [Mycobacterium tuberculosis T17]
 gi|289687780|gb|EFD55268.1| alanine racemase alr [Mycobacterium tuberculosis 02_1987]
 gi|289692729|gb|EFD60158.1| alanine racemase alr [Mycobacterium tuberculosis T92]
 gi|289696140|gb|EFD63569.1| alanine racemase [Mycobacterium tuberculosis EAS054]
 gi|289711112|gb|EFD75128.1| alanine racemase alr [Mycobacterium tuberculosis GM 1503]
 gi|289715147|gb|EFD79159.1| alanine racemase alr [Mycobacterium tuberculosis T85]
 gi|298496700|gb|EFI31994.1| D-alanine racemase [Mycobacterium tuberculosis 94_M4241A]
 gi|323717910|gb|EGB27099.1| alanine racemase alr [Mycobacterium tuberculosis CDC1551A]
 gi|326905266|gb|EGE52199.1| alanine racemase alr [Mycobacterium tuberculosis W-148]
 gi|328460202|gb|AEB05625.1| alanine racemase alr [Mycobacterium tuberculosis KZN 4207]
          Length = 408

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 180/386 (46%), Gaps = 50/386 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E + 
Sbjct: 40  VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 99

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIP----VISSVPQL-TFYSKLMSCGVSH 122
           LR   +  P     VL  +HP    I F   L+      +SS+ QL      +   G + 
Sbjct: 100 LRADGITAP-----VLAWLHP--PGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTA 152

Query: 123 PYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              ++VDTG NR G+   +    L     +  +   +L  ++SH+  AD P   +N VQ 
Sbjct: 153 TVTVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQA 212

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +RF   ++  +  G+    A L++SS  +  P+  F L RPGI++Y G   +     M  
Sbjct: 213 QRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVY-GLSPVPALGDMGL 271

Query: 235 V--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           V  +T +  + L++   AGE VSYG      RD+ +A+  IGYADG              
Sbjct: 272 VPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADG-------------- 317

Query: 293 SVF--LGGK--GFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK----L 343
            VF  LGG+    I G   P +G+I MD  M D+    L +  GD   +FGP I+     
Sbjct: 318 -VFRSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTA 376

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
            D A   GT +Y+++     R  + Y
Sbjct: 377 QDWADLVGTIHYEVVTSPRGRITRTY 402


>gi|294668465|ref|ZP_06733565.1| hypothetical protein NEIELOOT_00380 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309618|gb|EFE50861.1| hypothetical protein NEIELOOT_00380 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 352

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 174/372 (46%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LR  I L  L+ N+ ++  L G  +  AV+K +AYG G  + A AL +     F V  +E
Sbjct: 4   LRADIRLDRLRENYQTLKRLHGG-KMLAVLKADAYGHGAVRCAHALADLA-DGFAVAFLE 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E V+LR       I +L G+    E    D   L PV++   QL     L+      P  
Sbjct: 62  EAVELRTQGITQPIVLLEGVFDAAEYAAVDEYGLWPVVADQWQL---ETLLKHEWKTPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLI--ISHLACADDPSSHVNS 176
             L++D+G +R G        F HN  +      + G++S I  ISH ACAD+    +  
Sbjct: 119 VWLKMDSGMHRAGF-------FPHNYASAYTALAQSGKVSDIVKISHFACADEEERGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F    +   G E SLA+S+ +L  P       R G++LYG    +     ++ V+
Sbjct: 172 MQIEAFDMGCAGLAG-EESLANSAAMLAYPQARRDWGRAGLALYGIDPFLENDPSIKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              +R+   R     E + YG      R + + +AA GYADGYP   +            
Sbjct: 231 RLVSRVFAERVLQPHEPIGYGASFYTKRSTRVGLAACGYADGYPRRAA-----------T 279

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G    ILG+++MDM   ++ D+    VG  ++++G  + +++VA A+GT  Y+
Sbjct: 280 GTPVAVNGRRSRILGRVSMDMLTVELADTHE-GVGSEVELWGDTVSINEVAAAAGTIAYE 338

Query: 357 LLVRIGTRYAKF 368
           LL  +  + AKF
Sbjct: 339 LLCNV--KRAKF 348


>gi|212710753|ref|ZP_03318881.1| hypothetical protein PROVALCAL_01821 [Providencia alcalifaciens DSM
           30120]
 gi|212686450|gb|EEB45978.1| hypothetical protein PROVALCAL_01821 [Providencia alcalifaciens DSM
           30120]
          Length = 354

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 175/369 (47%), Gaps = 35/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  I    L++N   +    G A+  +V+K + YG G ++I   L  +    F V  + 
Sbjct: 5   IRAIIHPHNLEHNLAVIRQKIGQAKIWSVMKADGYGHGIKRIWRGLKAS--DGFAVLDLH 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E V LR    Q  I +L G     + ++ D   L   + S  QL   + +    +S P +
Sbjct: 63  EAVLLREEGWQGPILLLEGFFQAADLVVIDQYQLTTSVHSRWQL---AAIEQATLSQPIS 119

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++++G NRLG S+ E  D     +    +  ++L+ SH A +D P      V LE+ 
Sbjct: 120 VYIKLNSGMNRLGFSVSEYSDIVDQLTHMANVANVTLM-SHFANSDLPGG--TQVPLEK- 175

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK-----INKSHPMQTV 235
              I H+  +     +A+S  +L   N H+   R GI LYG +       I + H ++  
Sbjct: 176 ---IQHFSSLSLPTCIANSGAVLWHQNTHYDWVRAGIVLYGASPSGKWADIAEYH-LKAA 231

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ II I    AG+ + YG +    +   IA  A GYADGYP         H+P+  
Sbjct: 232 MTLQSEIIAIHHIEAGQSIGYGSKFTSEKPMRIATVACGYADGYP--------RHAPT-- 281

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   + +G    +LG ++MDM   DI+D   + +G  ++++G ++ +DDVA  +GT  Y
Sbjct: 282 -GTPVWCQGRRCELLGAVSMDMLTIDISDCPEVTIGTPVELWGENLPVDDVAQFAGTIGY 340

Query: 356 DLLVRIGTR 364
           +LL  +  R
Sbjct: 341 ELLCALARR 349


>gi|225023462|ref|ZP_03712654.1| hypothetical protein EIKCOROL_00320 [Eikenella corrodens ATCC
           23834]
 gi|224943811|gb|EEG25020.1| hypothetical protein EIKCOROL_00320 [Eikenella corrodens ATCC
           23834]
          Length = 351

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 174/360 (48%), Gaps = 26/360 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L   I L+ L++N+  +  L GN +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LTATIRLSHLRHNYQLLKRLHGN-KMLAVVKADAYGHGAVRCARALADLA-DGFAVATLD 61

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR     A I +L G+  P +   + +  L P + +  QL     L++     P  
Sbjct: 62  EGIELRQAGVSAPIVMLEGVFEPAEYAAVDEYRLWPGVQNQWQL---ESLLAHRWREPVT 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLER 181
             L++D+G +R+G   Q      H +  ++  Q++ I+  +H A AD+P   + + QL  
Sbjct: 119 VWLKMDSGMHRVGFFPQN-FAPAHQAL-RQSPQVAHIVNMTHFARADEPEQAMTTAQLAA 176

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           F T ++   G + SLA+S+ I+  P       R GI+LYG          ++ V+   +R
Sbjct: 177 FDTAVAGLSGAQ-SLANSAAIIAHPAARRDWGRAGIALYGIEPFPGACPELKPVMRLTSR 235

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I   R    GE V YG      R + I +AA GYADGYP T              G    
Sbjct: 236 IFAERTLQPGEPVGYGASFITERSTRIGIAACGYADGYPRTAQN-----------GCPLT 284

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G    ++G+++MDM   ++       VG  ++++G  + +  VA ++GT +Y+LL  I
Sbjct: 285 VNGQPSRLIGRVSMDMLAVELDHHQG--VGSEVELWGDAVSVATVAQSAGTISYELLCHI 342


>gi|160872424|ref|ZP_02062556.1| alanine racemase [Rickettsiella grylli]
 gi|159121223|gb|EDP46561.1| alanine racemase [Rickettsiella grylli]
          Length = 367

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 177/371 (47%), Gaps = 47/371 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++++L AL +N   +  ++  ++  A+VK NAYG G   IA AL +  +  F V+  EE 
Sbjct: 7   VELNLGALCHNVKRVRDIAPRSKLLAMVKANAYGHGLLPIAKALTD--IDGFGVSCSEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
           + LR    + RI ++ GI    E  ++ D  L  VI    QL   SK       HP    
Sbjct: 65  LYLRQAGLKQRIVLMEGIFSQDEISLLTDYELDTVIHDHHQLYLLSK-------HPLPRK 117

Query: 126 ----LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--------LIISHLACADDPSSH 173
               L+++TG NRLG        F+ N F+  L +LS         +++H + AD+  + 
Sbjct: 118 VNVWLKINTGMNRLG--------FSPNDFDAVLDKLSRHAWLNIVCVMTHFSNADNIRNT 169

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---H 230
               Q++ F   +  Y     SLA+S+ IL  P+ H    RPG+ LYG +   N S   +
Sbjct: 170 TTKNQIKLFEQTLKGYP-FPTSLANSAAILASPHVHADWVRPGLMLYGVSPFSNSSGAHY 228

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V+T ++ II I++   G+ V Y G     +   +   AIGY DGYP +        
Sbjct: 229 GLKPVMTLKSEIISIQQLKKGDKVGYRGTWISPQSLRVGTVAIGYGDGYPYSAKS----- 283

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                 G    + G +  ++G ++MDM   ++ + L  ++GD + ++G  + ++ +A  +
Sbjct: 284 ------GTPILVNGKLTELIGHVSMDMLTVNLLNQLETKIGDSVVLWGAGLPVEQIAKRT 337

Query: 351 GTTNYDLLVRI 361
            +  Y+LL  I
Sbjct: 338 SSFCYELLCGI 348


>gi|256828239|ref|YP_003156967.1| alanine racemase [Desulfomicrobium baculatum DSM 4028]
 gi|256577415|gb|ACU88551.1| alanine racemase [Desulfomicrobium baculatum DSM 4028]
          Length = 374

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 171/372 (45%), Gaps = 29/372 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R +I L AL +N+  +   + N   A V+K +AYG G  + A AL+ AG +     +V 
Sbjct: 8   VRTRIRLKALVDNYRLIRTRATN--PAPVIKSDAYGHGLPEAAAALFAAGARTMAAGTVG 65

Query: 67  EGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
           E   L+   P+  +  L G +       + + +++  + S  QL    +     G +   
Sbjct: 66  EAAVLKDTVPEVEVISLLGPLDTADYACVCERDIVAFVGSTEQLLLLEEAARLAGTTVRV 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFR 183
           AL+ DTG  RLG ++ EA          +  + ++  SHLA ADDP  +     Q  RF 
Sbjct: 126 ALKFDTGMARLGFAVDEAAGVADTLDGLEHVRATMACSHLATADDPGQAEYAQEQGGRFA 185

Query: 184 TLIS--HYKG--IEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQT 234
            ++   H +G  + ASLA+S  I   P  H  L RPGI+LYG     GT    K H +Q 
Sbjct: 186 RILKALHARGLDVRASLANSGAIFGHPALHHDLQRPGIALYGANPFHGTPWEAKGHGLQP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   +R++ IR   AG+ VSYG       +  I + A+GYAD Y   LS          
Sbjct: 246 AMQVSSRLVQIRTIPAGQSVSYGRTFTAPAEMRIGIVAVGYADNYSRGLSA--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
               +  I G  VP+LG++ M +T  D++       GD I + G      I  +++A   
Sbjct: 297 --KAQMLIHGKRVPVLGRVCMQLTAVDLSHVPEAAAGDEIFMLGGAGPAAISAEELAGWW 354

Query: 351 GTTNYDLLVRIG 362
           GT  Y++   +G
Sbjct: 355 GTITYEVFCLLG 366


>gi|147676995|ref|YP_001211210.1| alanine racemase [Pelotomaculum thermopropionicum SI]
 gi|254802371|sp|A5D4I1|ALR_PELTS RecName: Full=Alanine racemase
 gi|146273092|dbj|BAF58841.1| alanine racemase [Pelotomaculum thermopropionicum SI]
          Length = 374

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 173/381 (45%), Gaps = 38/381 (9%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L A+ +N   +  ++   A+  AVVK NAYG G E+++      G +   V  V EG
Sbjct: 9   EINLRAIAHNIREIRRVTEPGAKVMAVVKANAYGHGAEEVSQTALAGGAEWLGVARVAEG 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI-SSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR    +A + VL    P Q   +   NL   + +    L         G       +
Sbjct: 69  VSLRQAGIEAPVLVLGYTTPEQAADVIRHNLSQTVYTRNAALFLAEAAAREGKRARVHFK 128

Query: 128 VDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
           VDTG  R+G      +++E L+        +L QL +  I +H A AD         Q +
Sbjct: 129 VDTGMGRIGWLAGPGAVREILELA------RLPQLEVEGIFTHFAAADAADKRYTLEQFQ 182

Query: 181 RFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PM 232
           +F  +I   +  G+E  L   A+S+ I+  P  H  + R GI LYG   +D++++    +
Sbjct: 183 KFIEMIDELQKNGLEFPLRHAANSAAIMELPGTHLDMVRAGIILYGLYPSDEVDRRRIDL 242

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ +AR+  +++  AG  VSYG      R  +IA   +GYADGY   LS        
Sbjct: 243 RPAMSLKARVAHVKEVPAGFKVSYGCTYTTGRPGVIATLPLGYADGYSRLLSS------- 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G+  I G   P++G++ MD  M D++    ++ GD   + G      I  D+VA 
Sbjct: 296 ----KGEALIHGRRAPVVGRVCMDQVMVDVSGIPGVKAGDEAVLIGRQGGETISADEVAA 351

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY++   +  R  + Y
Sbjct: 352 KLGTINYEVTCMVSGRVPRVY 372


>gi|227549893|ref|ZP_03979942.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078039|gb|EEI16002.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 362

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 177/379 (46%), Gaps = 33/379 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M S + L  +IDL A+ +N   ++ L+G+A    VVK NAY  G  ++ P +  AG   F
Sbjct: 1   MVSMDLLTARIDLDAIAHNTRILSQLAGSACLMCVVKANAYNHGVSQVVPVMDAAGADAF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP--VISSVPQLTFYSKLMSC 118
              ++ E  ++R  T +  +  L+   PGQ+        IP  +   VP +     L+  
Sbjct: 61  GTATLAEAAEVRELTAKPVVSWLW--VPGQD--------IPAGIELGVPSIEHLRWLVDA 110

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            ++ P  ++VDTG +R GL ++   D   +   +    +  ++SHLA AD+P+   N  Q
Sbjct: 111 HINAPLHIKVDTGMHRSGL-VEADWDKAFSLAVRAGLNVRGLMSHLAVADEPAHPYNDEQ 169

Query: 179 LERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            + FR  I   +  G++     LA++  +L  P+  F   R GI LYG        H ++
Sbjct: 170 AQAFRRAIERARAHGLDVGCNHLANTPSLLSRPDLVFDQVRAGIGLYGLEPIAGAEHGLR 229

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSP 292
             +T  ARI+ ++  +AG+ +SYG       D  +AV   GYADG   +  G L+     
Sbjct: 230 PAMTWAARILAVKPLVAGDALSYGLTWSAPADGFVAVVPAGYADGVGRSWQGHLEVA--- 286

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGP-DIKLDDVALAS 350
                    ++    P +G++ MD  +  + D+   + VGD   IFG   +   ++A   
Sbjct: 287 ---------VRARRYPQVGRVCMDQLLIWLGDNPEGVAVGDEAIIFGAGGMSATELAERV 337

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++     R  + +
Sbjct: 338 GTINYEIVCSPKGRTVRSF 356


>gi|307245065|ref|ZP_07527159.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307249464|ref|ZP_07531453.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|307254020|ref|ZP_07535868.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258475|ref|ZP_07540213.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854053|gb|EFM86264.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306858538|gb|EFM90605.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306863046|gb|EFM94992.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867480|gb|EFM99330.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 381

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 177/378 (46%), Gaps = 41/378 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  + E ++
Sbjct: 15  ISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVARLREALE 73

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDTNL-----IPVISSVP-------QLTFYS 113
           ++      +I ++ G    +E +      FDT +     + ++  V        Q  F+ 
Sbjct: 74  IQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAKEWQQEQQKGFWK 133

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACAD 168
           +           L++DTG +RLG+  ++      + F ++L    L+     +SH + AD
Sbjct: 134 RKAKIYFPINVWLKIDTGMHRLGVHPEKV-----DMFYQRLKACPLVESISFVSHFSRAD 188

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
           +P       Q+  F    S Y   E S+++SSGIL     H+   RPGI ++G +     
Sbjct: 189 EPDCGYTEKQIAVFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYTP 248

Query: 229 SHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP      
Sbjct: 249 ITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYP------ 302

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
              ++P    G    + G +VPI+G+++MDM   D+      +VGD +  +G D+ +++V
Sbjct: 303 --RNAPE---GTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEEV 357

Query: 347 ALASGTTNYDLLVRIGTR 364
           A   G  +Y+L+ ++  R
Sbjct: 358 AQHIGVISYELITKLTPR 375


>gi|290958110|ref|YP_003489292.1| alanine racemase [Streptomyces scabiei 87.22]
 gi|260647636|emb|CBG70741.1| putative alanine racemase [Streptomyces scabiei 87.22]
          Length = 386

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 168/379 (44%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N  ++ A +  A   AVVK +AYG G  + A A   AG       + EE
Sbjct: 15  RAEIDLDALRANVRTLRARAAGAELMAVVKSDAYGHGAVRCARAAVEAGATWLGTATPEE 74

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
            + LR      R+        G  +   + ++   +S +  L   +             L
Sbjct: 75  ALALRAAGLSGRLMCWLWAPGGPWREAVEADIDVAVSGLWALREVTDAARAAGLRARVQL 134

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G +  +  +    +   +   L +++ + SH ACAD+P       QL RFR
Sbjct: 135 KADTGLGRNGCAPGDWPELVTEALRAEAEGLVKVTGLWSHFACADEPGHPSIEAQLTRFR 194

Query: 184 TLISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQT 234
            +I+H   +G+      +A+S   L  P+  F L R GI++YG +            ++ 
Sbjct: 195 DMIAHAEEQGVRPEVRHIANSPATLTLPDARFDLVRTGIAVYGVSPSPELGSAADLGLRP 254

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   A + L++   AG  VSYG        + + +  +GYADG P   SG     +  V
Sbjct: 255 VMRLSASLALVKHVPAGHGVSYGHHYVTPGATTLGLVPVGYADGVPRHASG-----TGPV 309

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
            +GGK         + G++ MD  + D+     +  GD + +FG     +   +D A A+
Sbjct: 310 LVGGKWRT------VAGRVAMDQFVVDLGGDEPV-AGDEVVLFGAGDRGEPTAEDWAQAA 362

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT  Y+++ RIGTR  + Y
Sbjct: 363 GTIAYEIVTRIGTRVPRVY 381


>gi|311744760|ref|ZP_07718556.1| alanine racemase [Aeromicrobium marinum DSM 15272]
 gi|311311877|gb|EFQ81798.1| alanine racemase [Aeromicrobium marinum DSM 15272]
          Length = 375

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 167/373 (44%), Gaps = 29/373 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A + N   +  L+  +   AVVK +AYG G  +I  A   AG     V +VEE + 
Sbjct: 14  VDLDAYRENLRLLGDLAPASALMAVVKADAYGHGMTEIGRAARQAGADWLGVATVEEALA 73

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           LR       +                 ++    SSV QL    ++++ G      L+VDT
Sbjct: 74  LRSGGDDGPVLCWLASPGASYAAAVAADVEVTASSVGQL---EEIVAAGGRPRVQLKVDT 130

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           G +R G + +E  D    +   +     +++   SHLACADDP    N +Q   FR  + 
Sbjct: 131 GLSRNGAAPEEWPDLVEAAARARDAGRIEITGTWSHLACADDPEHPANELQERAFRAALD 190

Query: 188 --HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEA 240
                G++     LA+S+  L  P+ H  L R GI+ YG     +++   P++  +T  A
Sbjct: 191 VVTAAGVDPGLRHLANSAATLTRPSTHLDLVRVGIAAYGIPPDPRLSIDLPLRPALTLRA 250

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  +R+  AG  VSYG +    R + + +  +GY +G           H  +      G
Sbjct: 251 RLAAVRRVPAGTGVSYGHRYVTERPTTLGLVPVGYGEGV----------HRAATGRAEAG 300

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYD 356
           F  G  VP++G I MD  + D+ D L  + GD + +FG     +    D A A+GT  Y+
Sbjct: 301 F-AGRRVPVVGTICMDQLVVDLGD-LPADRGDVVTLFGDGSDGEPSATDWAEAAGTIGYE 358

Query: 357 LLVRIGTRYAKFY 369
           ++  +G R    Y
Sbjct: 359 VVTGLGGRIRHTY 371


>gi|238922140|ref|YP_002935654.1| alanine racemase [Eubacterium eligens ATCC 27750]
 gi|238873812|gb|ACR73520.1| alanine racemase [Eubacterium eligens ATCC 27750]
          Length = 389

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 172/382 (45%), Gaps = 40/382 (10%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +ID+ AL +N+ ++    G N +   VVK +AYG G  +++  L  +G     V+S++E 
Sbjct: 11  EIDMDALAHNYETLRKRIGENVKFLGVVKADAYGHGSVQVSRLLQESGADYLAVSSIDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           V+LR       + +L G  P +E  ++I +     V      L +  + + CG +    +
Sbjct: 71  VELRHNGITMPVLIL-GHTPKEEVSELIKNNITQAVTCRAKALEYSEEAVKCGGTLKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-------IISHLACADDPSSHVNSVQL 179
           +VDTG +RLG       D+  +         +L       I +H A +D+      S   
Sbjct: 130 KVDTGMSRLGYLCDG--DYFESGVEGICEGCTLPGLDAEGIFTHFAVSDEFGEEYESYTK 187

Query: 180 ERFRTLISHYKGIEASL---------ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            +F    S    +E  L         A++  +   P     + RPG+ LYG  D   +  
Sbjct: 188 HQFELFTSVIDEVEKKLGKKFKIRHCANTGAVARYPETWLDMVRPGLLLYGYGD-FAQEL 246

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG---LD 287
            ++ V++ +  +  I+   AG  +SYGG  K  R + + V   GYADGY   LS    L 
Sbjct: 247 GLKPVMSLKTTVSTIKTYPAGTAISYGGIYKTDRKTRMGVVPYGYADGYFRCLSNRYELM 306

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
           +E  P+              P  GKI MDM M D+TD ++++VG  ++IFG    ++ +A
Sbjct: 307 TEEGPA--------------PQRGKICMDMCMIDLTDKMNVDVGSEVEIFGKANPIEHMA 352

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             +GT  Y+L   +  R  + Y
Sbjct: 353 QLAGTIPYELTCAVSKRVPRMY 374


>gi|228991111|ref|ZP_04151071.1| Alanine racemase [Bacillus pseudomycoides DSM 12442]
 gi|228768647|gb|EEM17250.1| Alanine racemase [Bacillus pseudomycoides DSM 12442]
          Length = 391

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 176/379 (46%), Gaps = 32/379 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++++L A+K+N         +   A  A VK N YG G  ++A A   AGV    V  V+
Sbjct: 11  VEVNLDAVKHNVREFKKRVNDKNIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHP---GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           EG++LR       I VL G  P    ++ I +D  ++  +  +  L   +++        
Sbjct: 71  EGIELREAGVTVPILVL-GYTPVDVAKDAIGYD--IMMTVYRIEDLKGINEIAKQLEKKA 127

Query: 124 Y-ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +  +++DTG +R+GL  +E   F     N K  ++  + +H + AD+ +    ++Q   F
Sbjct: 128 HIQVKIDTGMSRIGLQEEEVAPFLEELKNMKYIEIEGMFTHYSTADEINKTYTNMQTSLF 187

Query: 183 RTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
              ++  K ++  L     ++S+G +   N    + R GI +YG        H    +Q 
Sbjct: 188 EKAVNTAKEMDIHLPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHTVVSLQP 247

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ ++++  I+ A     VSYG     T +  IA   IGYADGY   LS          
Sbjct: 248 ALSLKSKLAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN--------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   I G  VP+LG++ MD  M D+T ++ ++VGD +  +G     +I ++++A   
Sbjct: 299 --KGHALINGIRVPVLGRVCMDQLMLDVTKAMPVQVGDEVVFYGRQGEEEISVEEIADTL 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++   +  R  + Y
Sbjct: 357 GTINYEVTCMLDRRIPRVY 375


>gi|318042533|ref|ZP_07974489.1| alanine racemase [Synechococcus sp. CB0101]
          Length = 396

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 183/386 (47%), Gaps = 32/386 (8%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           H  +   +++   A++ N  S+  +L+   +  AVVK + YG G   +A A    G   F
Sbjct: 17  HPRQRAWVEVCEAAVQANARSLRRSLAPGCQLMAVVKADGYGHGAVPVARAAAAGGASTF 76

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V +++EGV+LR    +  + VL  +  P + +      L+P +S + +      L + G
Sbjct: 77  GVATLQEGVELRQAGLRQPVLVLGNLTQPEELRACLHWQLMPTLSGMREALLCQNL-AAG 135

Query: 120 VSHPYALQV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
              P A+Q+  DTG  RLG   QE           +  QL+ + SHLA AD P + ++ +
Sbjct: 136 SGRPMAVQLKLDTGMARLGAPWQEGRRIAEAISALEAVQLAGLYSHLADADAPGTVLDPL 195

Query: 178 ---QLERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKIN-- 227
              Q ERF  +++     G+      LA+S+G L     H+ + R G++LYG    ++  
Sbjct: 196 TRQQQERFEQVLTGVQEAGLACGSRHLANSAGTLRTAQLHYDMVRVGLALYGQRPAVHLG 255

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-L 286
            S  +Q  +   AR+ LIR+  AG  VSYG +    R S +AV +IGYADG P  LS  L
Sbjct: 256 GSLALQPAMQVRARVSLIREVPAGTGVSYGHRFTTQRPSRLAVVSIGYADGVPRLLSNRL 315

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLD 344
              H             G  +P +G ITMD  + D T++  +E G  + + G D   ++D
Sbjct: 316 QVLH------------HGRRIPQVGAITMDQLVLDATEAPELEQGSVVTLLGSDGGERID 363

Query: 345 DVALA--SGTTNYDLLVRIGTRYAKF 368
            +A +   GT  +++L     R  + 
Sbjct: 364 PLAWSDPCGTIPWEILCGFKHRLPRL 389


>gi|313896008|ref|ZP_07829562.1| alanine racemase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975433|gb|EFR40894.1| alanine racemase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 368

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 40/380 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+L A+ +N+  +   +  +A+  AVVK +AYG G   +A     AG +   + ++ E
Sbjct: 8   VEINLGAIAHNYSEIRKHIQKDAKLCAVVKADAYGHGAIAVARKAIAAGAEYLALATISE 67

Query: 68  GVKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-- 122
            +KLR     TP     ++ G+   +    FD     +  +V +L     L +  V    
Sbjct: 68  ALKLREAGFTTP----LLILGLTKAENS--FDIVDADITQTVCRLDLAEALSAEAVCQNK 121

Query: 123 --PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L VDTG  R+G+  ++A        +    +L  + SH A AD       S  ++
Sbjct: 122 TVKVHLAVDTGLGRIGVRPEDAASMARAIISLPNVELEGVFSHFALADTAD---KSFAMQ 178

Query: 181 RFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           + R        IE +        +A S+ IL  P+ HF + R GI  YG   ++++ +  
Sbjct: 179 QVRLFAEACDAIERAGIHIPIRHIAESAAILDLPDVHFDMVRAGIIQYGIWPSNEVTRPI 238

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +   +   ARI+ I+    G+ V YG      R++ IA  ++GYADG+           
Sbjct: 239 TLHPAMKFCARIVYIKTVAPGDSVGYGRAFIAPRETRIATISVGYADGFL---------- 288

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALA 349
               + GG   + G   PI G+I MD  M D+TD     +GD + +FG + +  D+VA  
Sbjct: 289 --RAYAGGSVELHGRRAPIAGRICMDQCMIDVTDIPEAAIGDVVTLFGSETLTADEVAAR 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +GT +Y++L  +    ++ Y
Sbjct: 347 AGTISYEVLCLVSKHVSRIY 366


>gi|320009058|gb|ADW03908.1| alanine racemase [Streptomyces flavogriseus ATCC 33331]
          Length = 411

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 170/379 (44%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   + A +  A+  AVVK +AYG G    A A   AG       + +E
Sbjct: 37  RAEIDLAALRANVRVLRARASGAQLMAVVKSDAYGHGAVPCARAAQEAGASWLGTATPQE 96

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR    + R+        G  +   + ++   +S +  L    +     G+     L
Sbjct: 97  ALALRAAGIRGRVMCWLWTPGGPWREAVEADIDVSVSGMWALDEVVAAATEAGIPARIQL 156

Query: 127 QVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G       E +     +    + +++ + SH ACAD+P     + QL+ FR
Sbjct: 157 KADTGLGRNGCQPADWPELVSAARAAEEAGVLRVTGLWSHFACADEPGHPSIAAQLDVFR 216

Query: 184 TLISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQT 234
            ++++   +G+      +A+S   L  P  HF L R GI++YG +       +    ++ 
Sbjct: 217 DMVAYAEKEGVRPEVRHIANSPATLTVPESHFDLVRTGIAMYGISPSPELGTSADFGLRP 276

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A + L+++   G  +SYG       ++ +A+  +GYADG P   SG         
Sbjct: 277 VMTLAASVALVKQVPPGHGISYGHHYTTAAETTLALVPVGYADGIPRHASGR-------- 328

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   + G +  I G++ MD  + D+   + +E G    +FGP    +   +D A A+
Sbjct: 329 ---GPVLVGGAVRRIAGRVAMDQFVVDLGGEV-LEAGAEAVLFGPGDRGEPSAEDWARAA 384

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y+++ RIG R  + +
Sbjct: 385 DTIAYEIVTRIGVRVPRVH 403


>gi|238924324|ref|YP_002937840.1| alanine racemase [Eubacterium rectale ATCC 33656]
 gi|238875999|gb|ACR75706.1| alanine racemase [Eubacterium rectale ATCC 33656]
          Length = 376

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 179/386 (46%), Gaps = 41/386 (10%)

Query: 7   LRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFF 61
           +R  IDL A+  N  SM N L      AAVVK + YG G E ++    P  Y  G   + 
Sbjct: 6   IRADIDLDAILYNMESMHNKLKPGTMMAAVVKADGYGHGAEAVSEVLEPLPYLWG---YA 62

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM----- 116
           V +  E ++L     +  I +L    P Q + I D ++ P + +       S++      
Sbjct: 63  VATSNEAMELIAAGRKKPILILGLSFPEQFEEIVDNDVRPAVCTYETAKELSRIAVAKNK 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           +C +     +++DTG  R+G  + +E+ D            +  I +H A AD+ S    
Sbjct: 123 TCKIH----IKIDTGMCRIGFQVTEESADIIAQIAKLPNIMIEGIFTHFARADELSKEPA 178

Query: 176 SVQLERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
             Q + F+ +I+    +G+E  +   ++S+GI+  P  +  + R GI+LYG   +++++K
Sbjct: 179 FEQFDLFKRMIALVEARGVEIPIKHCSNSAGIVEIPECNMDMVRAGITLYGLWPSEEVDK 238

Query: 229 SH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           S   ++ V++  +R+  +++   G  +SYGG   +     IA   +GY DGY   LS   
Sbjct: 239 SKISLKPVMSLHSRVAYVKELEPGRHISYGGTFTVEHPMRIATVPVGYGDGYSRGLSN-- 296

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G   IKG   PI G++ MD  M D+TD   +++GD + + G D    I +
Sbjct: 297 ---------KGWVLIKGKKAPICGRVCMDQFMVDVTDIPDVKIGDAVTLLGKDGDETITM 347

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + +   SG  NY+    I  R  + Y
Sbjct: 348 EQLGELSGRFNYEFACLITPRVPRIY 373


>gi|332967677|gb|EGK06788.1| alanine racemase [Kingella kingae ATCC 23330]
          Length = 399

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 180/363 (49%), Gaps = 27/363 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L  +I L  L++N+  +    G  +  AVVK NAYG G  + A AL++     F V  +E
Sbjct: 48  LVCEIRLEHLRHNYRILKEKHG-GKLLAVVKANAYGHGAVRCALALHDIA-DGFAVAFLE 105

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHP 123
           E ++LR       I +L G    QE  +I   NL  V+ +  QL     L++     S  
Sbjct: 106 EAIELRENGITKPIVLLEGAFDAQEYHLIEQWNLWTVVHNQVQL---EDLLAHDWKQSAT 162

Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++D+G +R G      A  +T  S + K+G++ + +SH ACADD    +  +Q+E F
Sbjct: 163 VWLKMDSGMHRAGFFPHHYAAAYTALSQSNKVGKI-VKMSHFACADDAERGMTEIQIEAF 221

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTA 238
               +   G E+SLA+S+ IL  P  H    R GI+LYG +   +++      ++ V+  
Sbjct: 222 DLACADLAG-ESSLANSAAILAYPEAHRDWGRAGIALYGISPFTDRAGCFDADLKPVMRL 280

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +++   R     E + YG      R + + V A GYADGYP   +      +P      
Sbjct: 281 VSKVFAERVLQPHEPIGYGATFYTKRSTRVGVVACGYADGYPRATAN----DTPVA---- 332

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I G    ++G+++MDM   ++TDS +  +G  +++FG  + +++VA A+GT +Y++ 
Sbjct: 333 ---INGIRSRLIGRVSMDMITVELTDSHA-GLGSEVELFGDVVNVNEVARAAGTISYEIT 388

Query: 359 VRI 361
             I
Sbjct: 389 CNI 391


>gi|291279508|ref|YP_003496343.1| alanine racemase [Deferribacter desulfuricans SSM1]
 gi|290754210|dbj|BAI80587.1| alanine racemase [Deferribacter desulfuricans SSM1]
          Length = 363

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 174/366 (47%), Gaps = 25/366 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVEEG 68
           +I+L   K+N     +LS  ++  A+VK +AYG G  K++   Y    V+DF V ++EEG
Sbjct: 14  EINLANYKHNIEVAKSLS-KSKIIAIVKADAYGHGAIKLSKFAYEQCDVKDFGVATIEEG 72

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVI---SSVPQLTFYSKLMSCGVSHPY 124
           V LR   P  ARI  L  I     + +    + P +   S + +L  ++K     V    
Sbjct: 73  VNLRNVLPTDARIITLGYIDEHHFEELLHHKITPTVFDKSIMAKLDKFAK--GNNVVLDV 130

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++DTG NRLG  L    +    S++     + L+++HL+ +D    +    Q+ RF  
Sbjct: 131 VLKIDTGMNRLGFGLNTDFNELVESYSNL--NIVLMMTHLSSSDTDLDYT-KWQINRFDE 187

Query: 185 LISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            +  Y    E S+ +SS I    N  +  TRPGI  YG     N+   ++ V++  +++I
Sbjct: 188 YLKRYNVKAETSVFNSSAICFYSN-KYTYTRPGIMSYGYVYPENR-FGLKPVMSIYSKLI 245

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            I++   GE +SY      ++D  I V  IGYADGY   LS             G  F+ 
Sbjct: 246 HIKRLKKGEKISYNQTFTASKDMKIGVIPIGYADGYFRALSN-----------KGVMFVN 294

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ++G + MDMTM DIT     ++   +++ G  I  + +A    T +Y+++  I  
Sbjct: 295 GKPCNVVGTVCMDMTMIDITHLNESDLDCEVEVLGKHIDAEQIAKMCNTISYEIVCAISD 354

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 355 RIPRVY 360


>gi|295136431|ref|YP_003587107.1| alanine racemase [Zunongwangia profunda SM-A87]
 gi|294984446|gb|ADF54911.1| alanine racemase [Zunongwangia profunda SM-A87]
          Length = 368

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 170/370 (45%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL +L++N+  + + +    +  AVVK  AYG     IA  L  AG+  F V   +E
Sbjct: 9   LEIDLKSLEHNYQYLRSKVEPTVKMMAVVKAFAYGSDSVTIAAKLEKAGIDHFAVAYTKE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPYA 125
           G  LR    +  + VL+   P    ++ D  L P + S   LT + K         +P  
Sbjct: 69  GETLRAGGIEKPVLVLHP-QPHNLTLLIDNCLTPSLYSKHILTEFIKTAEALKLKEYPVH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADD-PSSHVNSVQLERFR 183
           + ++TG NRLG  L+E +D     F   L  +L  I SHLA ++D         Q+E F+
Sbjct: 128 ININTGLNRLGFGLEE-IDQVITLFKNTLAVRLVGIYSHLAASEDLAEKEFTQGQIETFK 186

Query: 184 T-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 L +    I   L ++SGIL  P   F + R GI LYG  +   +   ++ V T 
Sbjct: 187 KASGKILKAFDHKIMRHLCNTSGILNYPEATFDMVRTGIGLYGYGNSAQEDKKLKPVGTL 246

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I  I    A E V Y       RD+  A   IG+ADG    +S +  +   +V +  
Sbjct: 247 KTIISQIHNIKAEESVGYNRAFIAKRDTTTATLPIGHADG----ISRIYGKQKTAVLIND 302

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           K        PI+G + MDM M D+T  +  + GD + IFG +   + +A  +GT +Y+L+
Sbjct: 303 KE------APIIGNVCMDMIMVDVT-GIECKEGDQVIIFGKERSAEKLANNAGTISYELI 355

Query: 359 VRIGTRYAKF 368
             I  R  + 
Sbjct: 356 TSISQRVKRL 365


>gi|307256278|ref|ZP_07538062.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865242|gb|EFM97141.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 374

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 177/378 (46%), Gaps = 41/378 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  + E ++
Sbjct: 8   ISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVARLREALE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDTNL-----IPVISSVP-------QLTFYS 113
           ++      +I ++ G    +E +      FDT +     + ++  V        Q  F+ 
Sbjct: 67  IQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAEEWQQEQQKGFWK 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACAD 168
           +           L++DTG +RLG+  ++      + F ++L    L+     +SH + AD
Sbjct: 127 RKAKIYFPINVWLKIDTGMHRLGVHPEQV-----DMFYQRLKACPLVESISFVSHFSRAD 181

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
           +P       Q+  F    S Y   E S+++SSGIL     H+   RPGI ++G +     
Sbjct: 182 EPDCGYTEKQIAIFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYTP 241

Query: 229 SHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP      
Sbjct: 242 ITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYPRNAQ-- 299

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
             E +P +       + G +VPI+G+++MDM   D+      +VGD +  +G D+ +++V
Sbjct: 300 --EGTPVL-------VNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEEV 350

Query: 347 ALASGTTNYDLLVRIGTR 364
           A   G  +Y+L+ ++  R
Sbjct: 351 AQHIGVISYELITKLTPR 368


>gi|187924455|ref|YP_001896097.1| alanine racemase [Burkholderia phytofirmans PsJN]
 gi|226711029|sp|B2T5L6|ALR_BURPP RecName: Full=Alanine racemase
 gi|187715649|gb|ACD16873.1| alanine racemase [Burkholderia phytofirmans PsJN]
          Length = 356

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 168/367 (45%), Gaps = 30/367 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L   I  +AL NN       +  ++  AVVK NAYG G  ++ P L       F +  +E
Sbjct: 5   LSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARVFPGLR--ATDGFGLLDLE 62

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E VKLR       I +L G   P    +I   +L   + S  QL     L    +S P  
Sbjct: 63  EAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRM---LEMARLSKPVN 119

Query: 126 LQ--VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-LER 181
           +Q  ++TG NRLG + ++    +      + +GQ++L+ +H + AD        VQ  ER
Sbjct: 120 IQLKMNTGMNRLGYTPEKFRAAWERARAAQGVGQITLM-THFSDADGDRGVDYQVQAFER 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVT 237
               I+  +    SLA+S+  L  P  HF   RPGI +YG    G     +   +Q  +T
Sbjct: 179 GAQGIAGAR----SLANSAATLWHPATHFDWVRPGIIMYGASPSGVTAAIEGTGLQPAMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I ++    G  V YG   K      I V A GYADGYP     +  E +P +   
Sbjct: 235 LASELIAVQTLSEGHTVGYGSSFKARGSMRIGVVACGYADGYPR----VAPEGTPVI--- 287

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G    ++G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L
Sbjct: 288 ----VDGVRTRVVGRVSMDMLTVDLTPVPTANVGSRVELWGTSLPIDDVAQACGTIGYEL 343

Query: 358 LVRIGTR 364
           +  +  R
Sbjct: 344 MCAVAPR 350


>gi|152975352|ref|YP_001374869.1| alanine racemase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024104|gb|ABS21874.1| alanine racemase [Bacillus cytotoxicus NVH 391-98]
          Length = 392

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 176/381 (46%), Gaps = 36/381 (9%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++++L A+K+N         + N    A VK NAYG G  ++A A   AGVQ   V  V+
Sbjct: 11  VEVNLDAIKHNVKEFKKRIHNENITMMAAVKANAYGHGAVEVAKAATEAGVQQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNL----IPVISSVPQLTFYSKLMSCGV 120
           EG++LR       I VL    +   Q+ I +D  +    I  +SS+ ++    +L +   
Sbjct: 71  EGIELREAGVTVPILVLGYTPVEAAQDAIEYDIMMTVYRIEELSSINEIA--KQLQTKAR 128

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            H   +++DTG +R+GL  +E   F          ++  + +H + AD+      ++Q +
Sbjct: 129 VH---VKIDTGMSRIGLQEEEVAPFLKELQKMNHIEVEGMYTHYSTADELDKTYTNMQTK 185

Query: 181 RFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PM 232
            F   ++  K +   +     ++S+G +   N    + R GI +YG        H    +
Sbjct: 186 LFEKAVNTAKELGMPIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVVSL 245

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  ++ ++++  I++A     VSYG     T +  IA   IGYADGY   LS        
Sbjct: 246 QPALSLKSKVAHIKRAKKNRGVSYGNTYMTTGEEWIATVPIGYADGYNRQLSN------- 298

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                G   I G  VP+LG++ MD  M D+T ++ + VGD +  +G     +I +++VA 
Sbjct: 299 ----KGHALINGIRVPVLGRVCMDQLMLDVTKAMPVRVGDEVVFYGKQGDEEISVEEVAD 354

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY++   +  R  + Y
Sbjct: 355 LLDTINYEVTCMLDRRIPRAY 375


>gi|33241130|ref|NP_876072.1| alanine racemase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|81835791|sp|Q7V9Z2|ALR_PROMA RecName: Full=Alanine racemase
 gi|33238660|gb|AAQ00725.1| Alanine racemase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 386

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 166/353 (47%), Gaps = 33/353 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG-IHPGQEK 92
           AVVK + YG G E +A A    G  +  V +++E ++LR       I VL   I+P    
Sbjct: 45  AVVKADGYGHGSETVAEAALAGGATNLGVATLQEALELRKAGIVCPILVLGNLINPEDLD 104

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA----LQVDTGFNRLGLSLQEALDFTHN 148
                +L+P +SS  +    +++     SH       ++VDTG  RLG  L+ A +    
Sbjct: 105 ACIHWDLMPTLSSAREALLCNQIAE---SHDKEFCVHIKVDTGMTRLGCDLRLASELIQL 161

Query: 149 SFNKKLGQLSLIISHLACAD-DPSSHVNSV---QLERFRTLISHY----KGIEASLASSS 200
             N K   L  I SHLA AD + +   NS    Q E+F TL+S      K +   LA+S+
Sbjct: 162 VDNLKNLSLRGIYSHLALADVEANGQANSFTSKQKEKFETLLSSVMPRGKPLYRHLANSA 221

Query: 201 GILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           G L     HF + R G++LYG +    +  +  +Q  +   A++ L+R   +   VSYG 
Sbjct: 222 GTLRDKGLHFDMVRVGLALYGYSPLKDLRNNFSLQPALAVRAKVTLLRDVPSDTGVSYGH 281

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
                R S +AV  IGYADG    LSG       SV + GK +      P +G ITMD  
Sbjct: 282 TFITQRPSRLAVVGIGYADGISRALSG-----KMSVLIDGKFY------PQVGSITMDQL 330

Query: 319 MFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAK 367
           + DIT+S  I++G  + + G D    I   D +  SG+  +++L     R  +
Sbjct: 331 VIDITESPQIQIGSVVTLLGVDGDSAITPYDWSEISGSIPWEILCSFKYRLPR 383


>gi|325295168|ref|YP_004281682.1| Alanine racemase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065616|gb|ADY73623.1| Alanine racemase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 353

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 169/370 (45%), Gaps = 36/370 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEEG 68
           +I L  L +N+  +  +SG  +  AVVK NAYG G  +I+  L +   V  F V + EEG
Sbjct: 6   EIHLNRLFHNYREIKKISGRKKIFAVVKANAYGHGSVRISKFLEDKTDVSGFAVATFEEG 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            +LR    +  I V+        K   D  L PVI     L    +L       P+ +++
Sbjct: 66  KELREARIRREILVMASHLEEGYKEAVDYRLTPVIFDFEGLKLVKEL-----DIPFHVKI 120

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-----IISHLACADDPSSHVNSVQLERFR 183
           DTG  RLG        F  N +N+ L +L       I+SH + AD+        Q ++F 
Sbjct: 121 DTGMGRLG--------FLENEWNELLSELKYSKVEGIMSHFSSADEDLDFTKE-QFKKFY 171

Query: 184 TLISHYKGIEASLA----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           +  S  K ++  +     +S+ I +  +      R GI+LYG     +    ++ V+  +
Sbjct: 172 SFASELKQLKPEIKIHIDNSAAIPIKFDSILTHCRVGIALYGSKPYPDYPLNLKQVMEVK 231

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A++I I++  +   +SY    K ++   +AV + GYADG   +LS             G+
Sbjct: 232 AKVISIKELPSEFPISYSKTYKTSKQEKVAVISFGYADGLLRSLSN-----------KGE 280

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G   PI G+I MDMT+  I + L +  GD   I G  +  +++A  +GT  Y+++ 
Sbjct: 281 VLINGRRCPIRGRICMDMTIVSI-EGLKVRKGDTAIISGEKLTFEEIAEKAGTIPYEIMC 339

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 340 DISPRVKRIY 349


>gi|296158928|ref|ZP_06841756.1| alanine racemase [Burkholderia sp. Ch1-1]
 gi|295890803|gb|EFG70593.1| alanine racemase [Burkholderia sp. Ch1-1]
          Length = 356

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 167/366 (45%), Gaps = 28/366 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L   I  +AL NN       +  ++  AVVK NAYG G  ++ P L       F +  +E
Sbjct: 5   LSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARVFPGLR--ATDGFGLLDLE 62

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E VKLR       I +L G   P    +I   +L   + S  QL     L    +S P  
Sbjct: 63  EAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRM---LEMARLSKPVN 119

Query: 126 LQ--VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +Q  ++TG NRLG + ++    +      + +GQ++L+ +H + AD         Q+E F
Sbjct: 120 IQLKMNTGMNRLGYTPEKFRAAWERARAAQGVGQITLM-THFSDAD--GDRGVDYQVEAF 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTA 238
                   G   SLA+S+  L  P  HF   RPGI +YG    G     +   +Q  +T 
Sbjct: 177 ERGAQGIAGAR-SLANSAATLWHPATHFDWVRPGIIMYGASPSGVTAAIEGTGLQPAMTF 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I ++    G  V YG   K      I V A GYADGYP     +  E +P +    
Sbjct: 236 ASELIAVQTLNEGHTVGYGSSFKARGSMRIGVVACGYADGYPR----VAPEGTPVI---- 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              ++G    I+G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+
Sbjct: 288 ---VEGVRTRIVGRVSMDMLTVDLTPIPTANVGSRVELWGNALPIDDVAQACGTIGYELM 344

Query: 359 VRIGTR 364
             +  R
Sbjct: 345 CAVAPR 350


>gi|317495370|ref|ZP_07953739.1| alanine racemase [Gemella moribillum M424]
 gi|316914429|gb|EFV35906.1| alanine racemase [Gemella moribillum M424]
          Length = 375

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 178/378 (47%), Gaps = 35/378 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+++L A+ NN+  ++ L+G   + AVVK ++YGLG + IA  LY  GV+ F V ++EE 
Sbjct: 9   LRVNLDAVLNNYRKLDKLNGLKTSLAVVKADSYGLGAKVIADYLYKNGVRHFAVATLEEA 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHPY 124
           ++L+ Y  ++ + VL   +P   K   + N   +  + P   ++     +L         
Sbjct: 69  LELKKYIKESLLLVLGVTNPKNVKYAVENN---ISLTCPSKEWFEEALKELEKIDGKLKL 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++++TG NR+G S  E L   HN F  +  +   I SH + AD   +  +  Q   F +
Sbjct: 126 HIKLETGMNRIGTSEVEELMEIHNLFYSEKVEFEGIFSHYSNADGEDNEYDDYQTANFNS 185

Query: 185 LISHYKGIEA--SLASSSGILL--GPNYHFQLTRPGISLYG-----GTDKINKSHPMQTV 235
           L+  +K       + +S+G +     N    L+R GI+LYG       +++NK   ++ V
Sbjct: 186 LVKLFKLKPKYIHIENSAGTIKYSDRNDICNLSRIGIALYGCYPSSNIERLNKL-SLEPV 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +++  ++K   G  + YG   +   D  IA   IGYADG      G          
Sbjct: 245 ASLVSKVTHVKKVPKGTKIGYGISYETQEDEYIATIPIGYADGLLRRAQGF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
              K  + G    I+G++ MD  M   ++  +I+VGD + +FG      I +DD A    
Sbjct: 296 ---KLNVAGEECEIVGRVCMDQLMVRCSE--NIKVGDDVLVFGEYNNQKISVDDFADYQK 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++   I  R  + Y
Sbjct: 351 TISYEIFCCINRRVPRKY 368


>gi|256380541|ref|YP_003104201.1| alanine racemase [Actinosynnema mirum DSM 43827]
 gi|255924844|gb|ACU40355.1| alanine racemase [Actinosynnema mirum DSM 43827]
          Length = 388

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 164/374 (43%), Gaps = 56/374 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL  L++N   + A +  A   AVVK + YG G  ++A     +G       S+ E + 
Sbjct: 32  IDLDNLRHNTAYLAARAPGAELMAVVKADGYGHGAVEVARTALGSGATWLGSCSIPEALA 91

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--- 127
           LR     A +               DT+  P I+    L         G+S P AL+   
Sbjct: 92  LRAGGITAPVLAWLDTP--------DTDFAPAIAEGVDL---------GLSTPRALESAA 134

Query: 128 ---------------VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                          +DTG +R G    E   F   +      ++  I SHLACAD+P  
Sbjct: 135 AAARRAGRRARVHLKIDTGLSRNGCPADEWEAFVELAAATPEVEVHAIWSHLACADEPGH 194

Query: 173 HVNSVQLERF----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
                Q ERF    R  +      +  LA+S+ +L  P+ HF L RPGI+LY G + +  
Sbjct: 195 PATDAQAERFDDAYRAALRAGLDPKRHLANSAALLTRPDLHFDLVRPGIALY-GLNPVPD 253

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
            H ++ V+T  + ++  ++  AGE VSYG       D+ +A+  +GYADG P  LS  + 
Sbjct: 254 EHDLRPVMTFRSSVVRTKRIRAGESVSYGLTWTAKSDTSLALVPVGYADGVPRALS--NR 311

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LD 344
            H   V L G+        P++G++ MD  + D  D   I  GD + +FG  +       
Sbjct: 312 MH---VRLAGR------RRPVVGRVCMDQVVVDCGDD-EIAEGDEVVLFGTGVDGGPTAR 361

Query: 345 DVALASGTTNYDLL 358
           + A  +GT +Y+++
Sbjct: 362 EWADTTGTIDYEIV 375


>gi|134296048|ref|YP_001119783.1| alanine racemase [Burkholderia vietnamiensis G4]
 gi|134139205|gb|ABO54948.1| alanine racemase [Burkholderia vietnamiensis G4]
          Length = 356

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 167/362 (46%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++  AVVK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG   ++    +        +GQ++L+ +H + AD  +    + QL  F    
Sbjct: 124 MNSGMNRLGYQPEKYRAAWERARACPAIGQITLM-THFSDAD--TERGVAEQLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
            +  G   SLA+S+ +L  P+ HF   RPGI LYG    G         +Q  +T  + +
Sbjct: 181 ENIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSADIADTGLQPTMTLTSEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIAKGQAIGYGSTFSAPARMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGVRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNTLPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 PR 350


>gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 851

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 184/373 (49%), Gaps = 30/373 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++IDL AL +N  ++    G     AV+K +AYG G  + A  +   G     V ++ E 
Sbjct: 486 VRIDLDALASNVQAIRQAVG-VPVMAVLKADAYGHGAVRSARTVLLNGASSLAVATLGEA 544

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI---SSVPQLTFYSKLMSCGVSHPYA 125
           + LR     A I +L G  P  +      N I V      V Q + + + ++ G+     
Sbjct: 545 LHLRQADIAAPILIL-GYTPTWQMREALLNRISVALFDRHVAQ-SLHEQALALGLKAQVH 602

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           +++DTG  RLGL++++A+DF    + + L  + +  I +H A AD+  +    +QL+RF+
Sbjct: 603 IKIDTGMARLGLAVEQAVDFI--EWLQGLAGIEVVGIFTHFANADEADASFFGLQLQRFQ 660

Query: 184 TLISH--YKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           TL+     +G+   +   A+S+  ++ P+  + + R GI+LYG     +    +Q V+  
Sbjct: 661 TLLDQLTQRGLRPPVVHAANSAAAMVHPSARYDMVRAGIALYGIDPSSDVHLNLQPVLEF 720

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  +  +R+  AG  +SYG     +R S IA   +GYADG+           +P  +   
Sbjct: 721 QTEVAQVRELPAGSPISYGCTFVTSRISRIATIPVGYADGF---------RRAPQPWR-- 769

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +  I G  VP++G++ MD  M D+T+  S++ GD + + G      I+ ++VA   GT  
Sbjct: 770 EVLIHGQRVPVVGRVCMDYAMIDVTELDSVQRGDQVVLIGQQGTDRIRAEEVAEWLGTNA 829

Query: 355 YDLLVRIGTRYAK 367
           Y+++  I  R  +
Sbjct: 830 YEVVSAILPRVPR 842


>gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM
           22836]
          Length = 823

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 182/372 (48%), Gaps = 27/372 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+ +N++   + L+   +   +VK + YG G  ++A  L         V   EE
Sbjct: 465 LDIDLDAIVHNYNFYRSRLNPKTKMVCMVKADGYGTGATEVAKTLQYHKCDYLAVAVAEE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVS-HPYA 125
           GV LR    +  I VL     G E++     L P + +   L  F  +    G++ +P  
Sbjct: 525 GVFLRKQGIKVPIIVLNSEVGGFEELAMYA-LEPEVYNFRILDAFIKEAKLQGITNYPIH 583

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +RLG + ++  +      ++   ++  + SHLA ++  S + ++  +++ +T 
Sbjct: 584 IKIDTGMHRLGFTEEDIPELMERIKSQTGVRIQSVFSHLAASE--SWNFDNFTVDQIKTF 641

Query: 186 ISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
               K IE +        + +S+GI   PN    + R GISLYG +   +  + ++ V T
Sbjct: 642 KKITKEIEKNCHYQVMKHILNSAGIERFPNEQMDMVRLGISLYGVS--ASGLNGLRNVCT 699

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I+ I+   AGE V YG +    +D+ IA   IGYAD       GL  +    V   
Sbjct: 700 LKTTILQIKDIKAGETVGYGRKGHFDKDATIATIRIGYAD-------GLSRQFGNGV--- 749

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           GK  + G+MVPI+G I MD++M D+T  + ++ GD + IFG +  + D+A    T  Y++
Sbjct: 750 GKVLVNGHMVPIVGNICMDLSMIDVT-GIEVKEGDSVVIFGENPSVVDLAKEINTIPYEV 808

Query: 358 LVRIGTRYAKFY 369
           L  I +R    Y
Sbjct: 809 LTSISSRVKHIY 820


>gi|238797371|ref|ZP_04640871.1| Alanine racemase, catabolic [Yersinia mollaretii ATCC 43969]
 gi|238718802|gb|EEQ10618.1| Alanine racemase, catabolic [Yersinia mollaretii ATCC 43969]
          Length = 357

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 172/364 (47%), Gaps = 32/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L+AL++N   +    G+A   +VVK NAYG G  +I   L       F +  + E + 
Sbjct: 9   LHLSALRHNLSLIRRHVGSANIWSVVKANAYGHGLARIWQGL--DATDGFALLDLNEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    Q  I +L G    Q+  + D   L   + S  QL     + +  +S P    L+
Sbjct: 67  LREQGWQGPILLLEGFFQPQDLALLDHYRLTTTVHSDWQL---EAINAARLSAPLNIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNS-VQLERFRT 184
           +++G NRLG  + +A D      N    +G+++L+ SH A AD+   H+ +  Q  R + 
Sbjct: 124 LNSGMNRLGFPVGQA-DAVWQWANSLSNVGEVTLM-SHFANADN---HIGAGEQFSRIQQ 178

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240
              H        A+S+ IL  P  H+   RPGI LYG +   + +      ++ V+  ++
Sbjct: 179 ASGHIPAARC-FANSAAILRNPETHYDWVRPGIILYGASPSGDIADIAGIGLRPVMQLQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II I+   AG  V YG +   +    I V A GYADGYP          +PS   G   
Sbjct: 238 EIIAIQALSAGHQVGYGSRYSASGSQRIGVVACGYADGYP--------RLAPS---GTPI 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G +   +G I+MDM   D+T     +VG  ++I+G  + +D+VA A+GT  Y+L+  
Sbjct: 287 RVDGVLTQTVGAISMDMLTVDLTPCPQAQVGSQVEIWGETLPIDNVAAAAGTVGYELMCA 346

Query: 361 IGTR 364
           +  R
Sbjct: 347 LAAR 350


>gi|289423534|ref|ZP_06425335.1| alanine racemase [Peptostreptococcus anaerobius 653-L]
 gi|289156036|gb|EFD04700.1| alanine racemase [Peptostreptococcus anaerobius 653-L]
          Length = 387

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 183/386 (47%), Gaps = 49/386 (12%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L  L+ N++ +   +  +A+   V+K + YG G  ++A    + G   F V+  +E
Sbjct: 11  VEVNLDNLEFNYNELRKRVPDSAKMCMVIKADGYGHGAVELAKFYESIGADFFAVSRAKE 70

Query: 68  GVKLRLYTPQARIFVL---------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
             +LR    ++ I  L         Y +       IFD N+   I+ + +        S 
Sbjct: 71  AKELRDAGVKSPILNLGVTLEDEYEYMVERDLSMTIFDYNVASKINEIAK--------SM 122

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSH 173
           G      +++DTG +R+G  ++  LD+      KK+ QL  I      +H A AD+ +  
Sbjct: 123 GKVARLHIKLDTGMSRIGYVVEGRLDYVVGEI-KKISQLENIRLEGMFTHFANADEANPE 181

Query: 174 VNSVQLERFRTLIS--HYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
             ++QL RF++++     +GI+  L   S+S  +L  +  F + RPG+  YG   +D++ 
Sbjct: 182 FKNIQLARFKSVVDSLEEEGIKIELIHCSNSAAILNDDDDFNMVRPGVIQYGVYPSDEVE 241

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           K+  ++ V++ + R+  I++  +G  V YG     ++   IA   IGYADG+        
Sbjct: 242 KNVAIKPVMSFKCRVANIKELGSGVSVGYGRNYFTSKTERIATITIGYADGF-------- 293

Query: 288 SEHSPSVFLGGKG---FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKL 343
                    G KG   +I G   P+ G I MD TM  + D L +++GD + +FG + + +
Sbjct: 294 -------LRGRKGAYVYINGQKCPVTGNICMDQTMVRLPDGLDVKIGDEVLLFGEEYVTV 346

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +DVA    T  +++   I  R  + Y
Sbjct: 347 EDVARECSTIVHEVWCNINRRVDRIY 372


>gi|240949115|ref|ZP_04753463.1| alanine racemase [Actinobacillus minor NM305]
 gi|240296510|gb|EER47142.1| alanine racemase [Actinobacillus minor NM305]
          Length = 374

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 174/382 (45%), Gaps = 49/382 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  + E ++
Sbjct: 8   ISQEALRHNIQLIKTFAPKQKLLAMIKANAYGQGLLPAAGTLSDL-VEGFGVARLREALE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDTNLIPVISSVPQLT--------------- 110
           ++      +I ++ G    +E +      FDT    VI  + QL                
Sbjct: 67  IQETGYTGKIVLVEGFFDREELLKTLSRRFDT----VIHCLEQLELLEQVAKEWDAEQRK 122

Query: 111 -FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHL 164
            F+ +           L++DTG +RLG+  ++        F ++L   SL+     +SH 
Sbjct: 123 GFWKRKAKIYFPVHIWLKIDTGMHRLGVHPEQV-----EMFYQRLKACSLVASISFVSHF 177

Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
           + AD+        Q+  F      Y   E S+++SSGIL     H+   RPGI ++G + 
Sbjct: 178 SRADELDCGYTEKQIATFEAATKPYPEHERSISASSGILYWQQAHYDWVRPGIIMHGISP 237

Query: 225 KINK--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                 S   + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP  
Sbjct: 238 HYEPITSLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVIAMGYGDGYP-- 295

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
                  ++P    G    + G  VPI+G+++MDM   D+      +VGD +  +G D++
Sbjct: 296 ------RNAPE---GTPVLVNGRKVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLQ 346

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           ++DVA   G  +Y+L+ ++  R
Sbjct: 347 IEDVAKHIGVISYELITKLTPR 368


>gi|220903457|ref|YP_002478769.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|259710065|sp|B8J2K3|ALR_DESDA RecName: Full=Alanine racemase
 gi|219867756|gb|ACL48091.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 371

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 168/374 (44%), Gaps = 27/374 (7%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL+A ++N   + +L         ++K + YG G   +A      G     V  ++E 
Sbjct: 11  EIDLSAFRHNMRQIKSLLQPGTIFCPIIKADGYGHGAVPLAHEAVAMGAGYLGVAILDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
             LR       I +L    P     +   ++   I S  Q    S   S  G++    ++
Sbjct: 71  AALRAAGITLPILILGYTPPQAAAFVVSNHITQTIFSKEQADALSAAASNLGITVKVHVK 130

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG  R+G+  +EA  F       +   L  + +H A +D   S  ++  LE+F    +
Sbjct: 131 VDTGMTRIGVRPEEAAAFCSYVAGLENVHLEGMFTHFASSD---SADHAYCLEQFGRFTA 187

Query: 188 HYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237
               +EAS         A+S+ IL  P  H  + R GI LYG   +D+      ++ V+ 
Sbjct: 188 AIAAVEASGIRLGIRHCANSAAILSLPEGHLDMVRAGIILYGLKPSDECPMPIDLRPVMR 247

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +AR+ ++++   G  VSYG      ++S +A   IGYADGY   LS             
Sbjct: 248 LKARLAMVKQVPPGVGVSYGSIYHTQKESSLATIPIGYADGYTRMLS-----------RK 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALASGTTNYD 356
            +  ++G   P++G+I MD  M D++      VGD + +F GPD+  D++A   GT NY+
Sbjct: 297 AQVLLRGQRAPVVGRICMDQCMVDVSHVPQAAVGDEVLLFGGPDLPADEIAAHLGTINYE 356

Query: 357 LLVRIGTRYAKFYT 370
           ++  +G R  + Y 
Sbjct: 357 VVCMVGKRVPRVYV 370


>gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter heparinus DSM 2366]
 gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366]
          Length = 817

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 164/370 (44%), Gaps = 24/370 (6%)

Query: 9   LKIDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL AL  N  ++    L G  +  A+VK  +YG G  +IA  L    V    V   +
Sbjct: 460 MEIDLNALAGNLQFYRSKLLPG-VKVMAMVKAFSYGSGSFEIANLLQYHKVDYLAVAYTD 518

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EG+ LR       I V+    P     I   NL P I ++  L  +   +     +P  L
Sbjct: 519 EGISLRKAGITLPIMVM-SPEPSAFDAIIRYNLEPEIYNIEILQGFIGFLKTD-QYPIHL 576

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185
           ++DTG +RLG    +  D        +  +++ + SHL  ++D         Q+ERF  +
Sbjct: 577 KIDTGMHRLGFEEPDLSDLLKVLTETRKVKVASVFSHLVGSEDGLHDEFTRHQIERFTAM 636

Query: 186 IS------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                   HY  I   ++++SGI   P    ++ R GI LYG    +  +  +QTV   +
Sbjct: 637 TELISETLHYPFIR-HISNTSGISRHPETQLEMVRLGIGLYGFDAALKNNTALQTVAILK 695

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I  I+     E V YG +  L +   IA   IGYADGY                  G+
Sbjct: 696 TTITQIKHLKPNETVGYGRKGLLPKGGTIATVKIGYADGYSRAFGNGT----------GR 745

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             IKG +VP +G I MDM M D+T  L ++ GD + +F  ++ +  +A   GT  Y++L 
Sbjct: 746 MLIKGKLVPTVGVICMDMCMLDVT-GLDVKTGDEVIVFNNELSIAQLATQIGTIPYEILT 804

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 805 NVSQRVKRVY 814


>gi|227872694|ref|ZP_03991023.1| alanine racemase [Oribacterium sinus F0268]
 gi|227841454|gb|EEJ51755.1| alanine racemase [Oribacterium sinus F0268]
          Length = 360

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 171/329 (51%), Gaps = 29/329 (8%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++L+ L++N  ++ + L    +  AVVK +AYG G  ++A A+       F V ++EEG+
Sbjct: 15  VELSYLQDNIKAVKSHLRKGMQFCAVVKMDAYGHGIVEVARAVEEE-CALFGVATIEEGI 73

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPYAL 126
            LR       I +L  +  GQ + ++  +++P + +  Q   L+  SK    G S P  L
Sbjct: 74  ILRKGGITTPILILGVVPKGQYRSLWHYDIMPSLFTREQGEALSAISKKE--GKSLPCHL 131

Query: 127 QVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +DTG  R+G+ +++  A++     F+    ++  I SH AC DD       +Q  RF  
Sbjct: 132 ALDTGMGRIGIQVEKEGAVELGLELFSLSGIEICGIFSHFACCDDRDKSYTEMQERRFAD 191

Query: 185 LIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237
            +     +GI+     L++S+GIL G    + + R GI++YG   +  + +  P++ V++
Sbjct: 192 YLRALEERGIKLPLCHLSNSAGILEGRGVQYDMVRDGIAMYGLYPSKDMERKLPLKQVLS 251

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
            +A+I  I++  +GE +SYG    +TR+ + +A   +GY DGYP  LS     +   V +
Sbjct: 252 WKAKISHIKEVPSGEAISYGASF-VTREPMRVATVPVGYGDGYPRVLS-----NKAKVLV 305

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDS 325
           GGK        PILG++ MD  M D++ +
Sbjct: 306 GGKP------CPILGRVCMDQFMIDVSHT 328


>gi|291287316|ref|YP_003504132.1| alanine racemase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884476|gb|ADD68176.1| alanine racemase [Denitrovibrio acetiphilus DSM 12809]
          Length = 361

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 171/366 (46%), Gaps = 26/366 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLG-CEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A   N  +   LSG     A+VK +AY  G  E    A        F V ++ E 
Sbjct: 14  EIDLRAFGKNIETARELSG-TDIIAIVKADAYSHGELEMCGYAYQKHNCTKFAVATILEA 72

Query: 69  VKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YAL 126
           + LR +  +   IFVL  I     +  ++ N+I  I+     T Y++ +     H    +
Sbjct: 73  IILREHLGEGVSIFVLGYIDETFYEEAYEHNIIFTINDNDTATKYNEFLQRKNLHANVTV 132

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLERFRT 184
           +++TG NRLG       D +   F+     L    I+SHL+ AD    +  + Q+E F  
Sbjct: 133 KINTGMNRLGFRT----DMSWYEFSSAYPALRPIHIMSHLSSADTDREYTYN-QIEEFHN 187

Query: 185 LISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            I+  K     SL +SSGI  G    F LTRPGI LYG  D       ++ V+   +RI+
Sbjct: 188 FIAKNKIRCHTSLLNSSGIA-GYENKFSLTRPGIMLYGYLDG-GYDVKLEKVMRIYSRIV 245

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            I+    G+ VSY  +    R+  I V  IGYADGYP  LS  +  H          F+ 
Sbjct: 246 QIQYLRKGDAVSYSRKFHADRNMAIGVVPIGYADGYPRCLS--NKSHV---------FVD 294

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G   P++G + MDM M D+T  +++     +++ G  I  D++A  +GT +Y++L  I  
Sbjct: 295 GIKCPVIGNVCMDMMMVDLT-GVNLNGSLKVEVLGDSIDADELAEMAGTISYEILTGIQN 353

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 354 RIPRIY 359


>gi|329938191|ref|ZP_08287642.1| alanine racemase [Streptomyces griseoaurantiacus M045]
 gi|329302680|gb|EGG46570.1| alanine racemase [Streptomyces griseoaurantiacus M045]
          Length = 387

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 173/379 (45%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N  ++ A +  A+  AVVK +AYG G    A A   AG +     + EE
Sbjct: 12  RAEIDLAALRANVRALRAHAPGAQLMAVVKADAYGHGALPCARAALAAGARWLGTATPEE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR      RI        G  +   + +L   +S +  L    +   + GV     L
Sbjct: 72  ALALRAAGIPGRIMCWLWTPGGPWREAVEADLDLGVSGLWALREVTAAARAAGVPARVQL 131

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G S  +  +    +   +   L +++ + SHLACAD+P       QL RFR
Sbjct: 132 KGDTGLGRNGCSPADWPELVAEALRAEAAGLLRITGLWSHLACADEPGHPSVVPQLARFR 191

Query: 184 TLI--SHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQT 234
            ++  +  +G+      +A+S   L  P+ HF L R GI++YG +       P    ++ 
Sbjct: 192 EMVGYAEERGVRPEVRHIANSPAALTLPDSHFDLVRTGIAMYGLSPSPELGAPADFGLRP 251

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A + L++    G  VSYG       D+ + +  +GYADG P   SG        V
Sbjct: 252 VMTLAASLALVKHVPGGHGVSYGHHYVTPGDTTLGLVPLGYADGIPRHASGAG-----PV 306

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
            +GGK         + G++ MD  + D+       VG    +FGP    +   +D A A+
Sbjct: 307 LVGGKWRT------VAGRVAMDQFVVDLGGD-EPPVGAEAVLFGPGDRGEPTAEDWAQAA 359

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT  Y+++ RIGTR  + +
Sbjct: 360 GTIAYEIVTRIGTRVPRVH 378


>gi|167766635|ref|ZP_02438688.1| hypothetical protein CLOSS21_01141 [Clostridium sp. SS2/1]
 gi|167711758|gb|EDS22337.1| hypothetical protein CLOSS21_01141 [Clostridium sp. SS2/1]
 gi|291558653|emb|CBL37453.1| alanine racemase [butyrate-producing bacterium SSC/2]
          Length = 387

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 176/383 (45%), Gaps = 28/383 (7%)

Query: 4   NEFLRLK--IDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           N++ R+   IDL A+ +N   +  + G   +   V+K + YG G   IA  L   GV  F
Sbjct: 2   NQYYRVHAVIDLDAICHNIREVKRVVGEGVKVMPVIKADGYGHGAVPIAKELNKIGVDAF 61

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCG 119
            V  +EEG+ LR    +  I +L      Q   +    + P +         SK+  + G
Sbjct: 62  AVAILEEGITLRNNGIRQPILILGYTSEYQYSSLIQYEIEPTVFCYEMAESLSKIAQALG 121

Query: 120 VSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 +++DTG NR+G    +E++D           ++  I +H ACAD+        Q
Sbjct: 122 KDAKIHIKLDTGMNRIGFKPTKESVDIIEKIAKLPNIKIQGIFTHFACADEADKTETYEQ 181

Query: 179 LERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH- 230
             ++   I+  +  +       +++S+ I+    +   + R GI  YG   +++++K   
Sbjct: 182 ERKYDQFITWLEERDIYIPIKHVSNSASIIDLDGFRKDMVRSGIITYGLYPSEEVSKDVL 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +  +  I+ I++  AGE +SY       + + IA   +GYADGYP +LS      
Sbjct: 242 DLRPAMELKTHIVYIKEVEAGEGISYNHTYVTDKKTKIATIPVGYADGYPRSLSS----- 296

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                  GK  I+G   PI+G+I MD  M D+TD   + V D + + G D    + +++V
Sbjct: 297 ------KGKVLIRGQYAPIIGRICMDQFMVDVTDVEGVSVMDEVTLVGHDGNKMLTVEEV 350

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +G+ NY+ +  IG R  + Y
Sbjct: 351 ANEAGSFNYEFVCGIGKRVPRVY 373


>gi|291525106|emb|CBK90693.1| alanine racemase [Eubacterium rectale DSM 17629]
          Length = 376

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 177/386 (45%), Gaps = 41/386 (10%)

Query: 7   LRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFF 61
           +R  IDL A+  N  SM N L      AAVVK + YG G E ++    P  Y  G   + 
Sbjct: 6   IRADIDLDAILYNMESMHNKLKPGTMMAAVVKADGYGHGAEAVSEILEPLPYLWG---YA 62

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM----- 116
           V +  E ++L     +  I +L    P Q + I D ++ P + +       S++      
Sbjct: 63  VATSNEAMELIAAGRKKPILILGLSFPEQFEEIVDNDVRPAVCTYETAKELSRIAVAKNK 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           +C +     +++DTG  R+G  + +E+ D            +  I +H A AD+ S    
Sbjct: 123 TCKIH----IKIDTGMCRIGFQVTEESADIIAQIAKLPNIMIEGIFTHFARADELSKEPA 178

Query: 176 SVQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
             Q + F+ +I+  +  E  +     ++S+GI+  P  +  + R GI+LYG   +++++K
Sbjct: 179 FEQFDLFKRMIALVEAREVEIPIKHCSNSAGIVEIPECNMDMVRAGITLYGLWPSEEVDK 238

Query: 229 SH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           S   ++ V++  +R+  +++   G  +SYGG   +     IA   +GY DGY   LS   
Sbjct: 239 SKISLKPVMSLHSRVAYVKELEPGRHISYGGTFTVEHPMRIATVPVGYGDGYSRGLSN-- 296

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G   IKG   PI G++ MD  M D+TD   +++GD + + G D    I +
Sbjct: 297 ---------KGWVLIKGKKAPICGRVCMDQFMVDVTDIPDVKIGDAVTLLGKDGDETITM 347

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + +   SG  NY+    I  R  + Y
Sbjct: 348 EQLGELSGRFNYEFACLITPRVPRIY 373


>gi|320529492|ref|ZP_08030578.1| alanine racemase [Selenomonas artemidis F0399]
 gi|320138286|gb|EFW30182.1| alanine racemase [Selenomonas artemidis F0399]
          Length = 368

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 172/380 (45%), Gaps = 40/380 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+L A+ +N+  +   +  +A+  AVVK +AYG G   +A     AG +   + ++ E
Sbjct: 8   VEINLGAIAHNYGEIRKHIQKDAKLCAVVKADAYGHGAIAVARKAIAAGAEYLALATISE 67

Query: 68  GVKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-- 122
            +KLR     TP     ++ G+   +    FD     +  +V +L     L +  V    
Sbjct: 68  ALKLREAGFTTP----LLILGLTKAENS--FDIVDADITQTVCRLDLAEALSAEAVCQNK 121

Query: 123 --PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L VDTG  R+G+  ++A        +    +L  + SH A AD       S  ++
Sbjct: 122 TVKVHLAVDTGLGRIGVRPEDAASMARAIISLPNVELEGVFSHFALADTAD---KSFAMQ 178

Query: 181 RFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           + R        IE +        +A S+ IL  P+ HF + R GI  YG   + ++ +  
Sbjct: 179 QVRLFAEACDAIEHAGIHIPIRHIAESAAILDLPDVHFDMVRAGIIQYGIWPSSEVTRPI 238

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +   ARI+ I+    G+ V YG      R++ IA  ++GYADG+           
Sbjct: 239 TLRPAMKFCARIVYIKTIAPGDSVGYGRAFIAPRETRIATISVGYADGFL---------- 288

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALA 349
               + GG   + G   PI G+I MD  M D+TD     VGD + +FG + +  D+VA  
Sbjct: 289 --RAYAGGSVELHGRRAPIAGRICMDQCMIDVTDIPEAAVGDVVTLFGSETLTADEVAAR 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +GT +Y++L  +    ++ Y
Sbjct: 347 AGTISYEVLCLVSKHVSRIY 366


>gi|237743978|ref|ZP_04574459.1| alanine racemase [Fusobacterium sp. 7_1]
 gi|229433009|gb|EEO43221.1| alanine racemase [Fusobacterium sp. 7_1]
          Length = 354

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 176/372 (47%), Gaps = 38/372 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  ++ N     VVK NAYGLG  +I   L   GV  F V ++EE 
Sbjct: 5   VEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSVEITKILQEIGVNFFGVANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L+    + +I +L G     E I      + V ISS+ QL F   L++  ++    L+
Sbjct: 65  IELQEAGIKDKILIL-GASFEDELIEATKRGVHVAISSMGQLQF---LVNNKLNPNIHLK 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QLERFRT 184
            DTG  RLG  + EA        N  L  L  I SHL+ +D+ +    +    Q+E+F+ 
Sbjct: 121 FDTGMTRLGFEVDEAKKVIEFCKNNNL-NLVGIFSHLSDSDENTVETKNFTLEQIEKFKK 179

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKINKSHP-MQTVVT 237
           +++        +++S+GI      +FQ      L R GI +Y  T   NK  P ++ + T
Sbjct: 180 IVNSLNLKYIHISNSAGIT-----NFQNDIVGNLVRMGIGMYSFTG--NKKTPYLKNIFT 232

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++R++ I+K      VSYG    L  DS  AV  IGYADG    LS            G
Sbjct: 233 IKSRVLFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLSK-----------G 281

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G   I  +   I+G I MDMTM  I   +  S+++GD + +   DI LD++ +      +
Sbjct: 282 GYVLINNHRCEIIGNICMDMTMIRIPKEVENSVKIGDEVTVINADI-LDNLNIPELCV-W 339

Query: 356 DLLVRIGTRYAK 367
           + +  IG R  +
Sbjct: 340 EFMTGIGKRVKR 351


>gi|254360577|ref|ZP_04976726.1| alanine racemase [Mannheimia haemolytica PHL213]
 gi|153091117|gb|EDN73122.1| alanine racemase [Mannheimia haemolytica PHL213]
          Length = 374

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 172/377 (45%), Gaps = 39/377 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   + + +   +  A++K NAYG G    A  L +  V  F V  + E ++
Sbjct: 8   IDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLPAAGTLADM-VDGFGVARLREALE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDTNLIPVISSVPQLT--------------- 110
           ++      +I ++ G    +E +      FDT    VI ++ QL                
Sbjct: 67  IQETGYTGKIVLVEGFFDREELLKTLSRKFDT----VIHNLEQLELLEQVAKEWQAEQQK 122

Query: 111 -FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
            F+++           L++DTG +RLG+  ++   F     N  L      +SH + AD+
Sbjct: 123 GFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVERLKNCALVNSISFVSHFSRADE 182

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
                   Q+  F      Y+  + S+++SSGIL     H+   RPGI ++G +      
Sbjct: 183 LDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYWKQAHYDWVRPGIIMHGISPHYTPI 242

Query: 230 HPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP       
Sbjct: 243 TDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVTAMGYGDGYP------- 295

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
             ++P    G    I G +VPI+G+++MDM   D+      +VGD    +G  + ++DVA
Sbjct: 296 -RNAPE---GTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKVGDKAIFWGEQLLIEDVA 351

Query: 348 LASGTTNYDLLVRIGTR 364
              G  +Y+L+ ++  R
Sbjct: 352 KHIGVISYELITKLTPR 368


>gi|291529405|emb|CBK94991.1| alanine racemase [Eubacterium rectale M104/1]
          Length = 376

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 177/386 (45%), Gaps = 41/386 (10%)

Query: 7   LRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFF 61
           +R  IDL A+  N  SM N L      AAVVK + YG G E ++    P  Y  G   + 
Sbjct: 6   IRADIDLDAILYNMESMHNKLKPGTMMAAVVKADGYGHGAEAVSEVLEPLPYLWG---YA 62

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM----- 116
           V +  E ++L     +  I +L    P Q + I D ++ P + +       S++      
Sbjct: 63  VATSNEAMELIAAGRKKPILILGLSFPEQFEEIVDNDVRPAVCTYETAKELSRIAVAKNK 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           +C +     +++DTG  R+G  + +E+ D            +  I +H A AD+ S    
Sbjct: 123 TCKIH----IKIDTGMCRIGFQVTEESADIIAQIAKLPNIMIEGIFTHFARADELSKEPA 178

Query: 176 SVQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
             Q + F+ +I+  +  E  +     ++S+GI+  P  +  + R GI+LYG   +++++K
Sbjct: 179 FEQFDLFKRMIALVEAREVEIPIKHCSNSAGIVEIPECNMDMVRAGITLYGLWPSEEVDK 238

Query: 229 SH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           S   ++ V++  +R+  +++   G  +SYGG   +     IA   +GY DGY   LS   
Sbjct: 239 SKISLKPVMSLHSRVAYVKELEPGRHISYGGTFTVEHPMRIATVPVGYGDGYSRGLSN-- 296

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G   IKG   PI G++ MD  M D+TD   +++GD + + G D    I +
Sbjct: 297 ---------KGWVLIKGKKAPICGRVCMDQFMVDVTDIPDVKIGDAVTLLGKDGDETITM 347

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + +   SG  NY+    I  R  + Y
Sbjct: 348 EQLGELSGRFNYEFACLITPRVPRIY 373


>gi|134293333|ref|YP_001117069.1| alanine racemase [Burkholderia vietnamiensis G4]
 gi|134136490|gb|ABO57604.1| alanine racemase [Burkholderia vietnamiensis G4]
          Length = 373

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 168/358 (46%), Gaps = 29/358 (8%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           A+++N   +   +  +R  AV+K NAYG G E+I P L  A      +  ++E V++R  
Sbjct: 13  AVRHNLDFIRRTAARSRVWAVIKANAYGHGIERIYPGL--AAADGIALLDLDEAVRVREL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
                + +L GI  P   ++     L   +    QL     L++     P  +Q  +++G
Sbjct: 71  GWDKPVLLLEGIFEPVDVELADRHRLTVAVHCDEQLDL---LIAAQPQRPIDIQLKMNSG 127

Query: 132 FNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
            NRLG         +   +    +G ++L++ H A AD+      + QL +F    +   
Sbjct: 128 MNRLGYRPHLFRAAWERAAAAPSIGNITLMM-HFANADEGEV---AWQLNQFDAATAGIP 183

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIR 246
           G E S ++S+ +L  P  H    RPG  LYG +      H    P+   +T  ++II ++
Sbjct: 184 G-ERSTSNSAAVLWHPQAHRDWVRPGTILYGASPTGASRHIADTPLMAAMTLTSKIIGVQ 242

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                E V YG +    +   I V A GYADGYP         H+P+   G    + G M
Sbjct: 243 TLAPQETVGYGRRFTAEQPMRIGVVACGYADGYP--------RHAPT---GTPIAVDGVM 291

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 292 TRVIGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCALARR 349


>gi|303326566|ref|ZP_07357009.1| alanine racemase [Desulfovibrio sp. 3_1_syn3]
 gi|302864482|gb|EFL87413.1| alanine racemase [Desulfovibrio sp. 3_1_syn3]
          Length = 352

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 167/359 (46%), Gaps = 39/359 (10%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG-IHPGQEKI 93
           VVK +AYG G   +A AL  AG + F V +V EGV LR       I  L G I     + 
Sbjct: 10  VVKSDAYGHGLLPVARALDGAGARRFAVGTVCEGVALREAGLGQTIVPLMGAISREDWQA 69

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--ALQVDTGFNRLGLSLQEALDFTHNSFN 151
               +L P+++    +   +    C    P+  AL+ +TG NRLG S +E L     S  
Sbjct: 70  AAAHDLTPLLTDFEDIEKAAA--CCPADRPFRVALKCETGMNRLGFSAEE-LPAALESL- 125

Query: 152 KKLGQLS--LIISHLACADDPSSHV-NSVQLERFRTLIS----HYKGIEASLASSSGILL 204
           ++  +L+  L +SHLACAD P        Q ERF ++ +     +  I  SL +S+G L 
Sbjct: 126 RRFPRLAPVLALSHLACADMPGETAYTQAQAERFASMCAVLREAFPDIARSLGNSAGALG 185

Query: 205 GPNYHFQLTRPGISLYGG-----TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
            P   ++  RPG++LYGG     T    +   ++ V++  + ++ +R+  AG+ VSYG  
Sbjct: 186 LPESRYEACRPGLALYGGNPFAGTAWETRGTGLEWVMSVSSPVLQVRQLKAGQSVSYGRI 245

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
               +   +AV A GYA G+   LS  +D              I G  VP +G++ M M 
Sbjct: 246 FTAPQAMTVAVVAAGYATGFARALSNRIDL------------LINGRRVPQVGRVCMSML 293

Query: 319 MFDITDSLSIEVGDYIQIFG-------PDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           M D++    +  GD   I G         +   ++A   GT  Y++L  +G+   + Y+
Sbjct: 294 MADVSSLPDVRTGDTAWILGGPAAPGQRPVSAQEMADELGTIPYEILCLMGSTNPRVYS 352


>gi|296332832|ref|ZP_06875292.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673178|ref|YP_003864850.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150112|gb|EFG91001.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411422|gb|ADM36541.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 389

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 177/387 (45%), Gaps = 36/387 (9%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +  F R    +IDL+A+K N  +M    G +    AVVK NAYG G  + A A  +AG
Sbjct: 1   MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR    +A I VL  + P   +I  + +L     SV  L   ++ M
Sbjct: 61  ASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYAEIAAEYDLTLTGYSVEWLQEAARHM 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175
             G  H + L+VDTG NRLG+  +E +       ++    +   + +H A AD+      
Sbjct: 121 KKGSLH-FHLKVDTGMNRLGVKTEEEVHHVMAILDRNPRLKCKGVFTHFATADEKERGYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG------TDKIN 227
            +Q ERF+ LI+    K +    A+S+  L      F   R GI +YG       TD+I 
Sbjct: 180 LMQFERFKELIAPLPLKKMMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADITDEIP 239

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            + HP  T+ +  + + LIRK   GE VSYG +    +D+ I    +GYADG+   L G 
Sbjct: 240 FELHPAFTLHSTLSHVKLIRK---GESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGT 296

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              +KG  + I G+I MD  M ++        G  + + G      I 
Sbjct: 297 EI------------LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYIS 342

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +D++A    T NY++   I +R  + +
Sbjct: 343 MDEIAGRLETINYEVSCTISSRVPRMF 369


>gi|145294758|ref|YP_001137579.1| alanine racemase [Corynebacterium glutamicum R]
 gi|166967410|sp|A4QBT0|ALR_CORGB RecName: Full=Alanine racemase
 gi|140844678|dbj|BAF53677.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 361

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 170/389 (43%), Gaps = 56/389 (14%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L  KIDL A+ +N   +  ++G A+  AVVK NAY  G EK+AP +   G   F V ++
Sbjct: 3   LLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATL 62

Query: 66  EEGVKLR-----------LYTPQA-------RIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
            E ++LR           ++TP+        R   L  I P   K + DT+   +  S+ 
Sbjct: 63  AEAMQLRDIGISQEVLCWIWTPEQDFRAAIDRNIDLAVISPAHAKALIDTDAEHIRVSI- 121

Query: 108 QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
                              ++D+G +R G+  QE              +++ + +HLACA
Sbjct: 122 -------------------KIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLACA 162

Query: 168 DDPSSHVNSVQLERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGG 222
           D+P +     Q+  FR  ++     G+E  +    +S   L   + H ++ RPG++ YG 
Sbjct: 163 DEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGL 222

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                + H ++  +T EA++ ++++  AG+  SYG   +      +AV   GYADG P  
Sbjct: 223 EPVAGREHGLKPAMTWEAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMP-- 280

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD- 340
                  H+   F      I G   P +G++ MD  +  + D+   +E G    IFG + 
Sbjct: 281 ------RHAQGKF---SVTIDGVDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIFGENG 331

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
               D A    T NY+++ R   R  + Y
Sbjct: 332 HDATDFAERLDTINYEVVCRPTGRTVRAY 360


>gi|297159652|gb|ADI09364.1| alanine racemase [Streptomyces bingchenggensis BCW-1]
          Length = 384

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 166/379 (43%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DL AL+ N  ++ A +  A   AVVK +AYG G    A A   AG       + EE
Sbjct: 9   RAVVDLAALRANVRALRAAAPGAELMAVVKSDAYGHGAVPCARAAREAGASWLGTATPEE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR      R+        G  +   + ++   +S++  L    +    CG +    L
Sbjct: 69  ALALRAAGDTGRLLCWLWTPGGPWREAIEADVDVSLSAMWALREAVAAARECGRTARVQL 128

Query: 127 QVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +  +        +  G +++  + SH ACAD+P     + QL+ FR
Sbjct: 129 KADTGLGRNGCPPADWPELVAAARAAEAEGTVTVTGLWSHFACADEPGHPSIAAQLKVFR 188

Query: 184 TLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQT 234
           TL++  +  G+      +A+S   L  P  HF L R GI++YG +      HP    ++ 
Sbjct: 189 TLLAQAEQAGLRPEVRHIANSPATLTLPESHFDLVRTGIAVYGISPSPEVGHPGDFGLRP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A +  +++   G  VSYG +      + +A+  +GYADG P   SG         
Sbjct: 249 VMTLVASLASVKRVPGGHGVSYGHRYITPGPTTLALVPVGYADGVPRHASGT-------- 300

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   + G    + G + MD  + D+    +   GD   +FGP    +   +D A A 
Sbjct: 301 ---GPVLVAGKWRTVAGTVAMDQFVVDLGGDAAAP-GDEAVLFGPGDRGEPTAEDWARAV 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           G+  Y+++ RI  R  + Y
Sbjct: 357 GSIAYEIVTRISARVPRVY 375


>gi|116626436|ref|YP_828592.1| alanine racemase [Candidatus Solibacter usitatus Ellin6076]
 gi|116229598|gb|ABJ88307.1| alanine racemase [Candidatus Solibacter usitatus Ellin6076]
          Length = 376

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 175/374 (46%), Gaps = 34/374 (9%)

Query: 16  LKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           +  N+ ++  ++G     A VVK +AYG G  +++  L   G +   V+SVEE V LR  
Sbjct: 16  IARNYRNVRHVAGPRTEVAGVVKADAYGHGALEVSRVLLAEGARWLAVSSVEEAVHLREG 75

Query: 75  -TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGF 132
               ARI V+ G  P +   + D +L P + S+ Q+    +L  S G   PY L++D+G 
Sbjct: 76  GIRDARILVMGGFLPYEANSVVDFDLTPAVHSLSQIRDIDRLAASAGKPLPYHLKIDSGM 135

Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK-- 190
            RLG +   A +      + +   L  +++H A A D +S   + Q   F  +    +  
Sbjct: 136 GRLG-TRAAAAEILATLADSRHASLEGLMTHFASAADYTSPQTAEQTAYFEAICGTLRAA 194

Query: 191 GIEAS-LASSSGILLG-----PNYHFQLTRPGISLYGGTDKINKSHPMQTV-----VTAE 239
           G+ A  L +SS I +G     P Y   L R G +LYG         P Q +     +T +
Sbjct: 195 GVTAPYLHTSSTIAIGYGRNSPAY--TLVRAGHALYGYVSPARGEAPPQLLNVKPALTWK 252

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A+++ ++    G LV YGG  +  R   I +   GYADG    LS             GK
Sbjct: 253 AKLLAVKDIPEGALVGYGGSFRAPRAMRIGILGAGYADGMFHRLSNR-----------GK 301

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLD--DVALASGTTNY 355
               G +  I+G ++MD+T  D++ + ++  GD + + G   D  LD   +A  +GT +Y
Sbjct: 302 VIADGKLTAIIGTVSMDLTTIDLSHTAALGPGDEVTLLGVEGDASLDAQQIAKVAGTISY 361

Query: 356 DLLVRIGTRYAKFY 369
           ++L  I +R  + Y
Sbjct: 362 NILCSISSRVHRVY 375


>gi|317499467|ref|ZP_07957733.1| alanine racemase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893241|gb|EFV15457.1| alanine racemase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 387

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 176/383 (45%), Gaps = 28/383 (7%)

Query: 4   NEFLRLK--IDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           N++ R+   IDL A+ +N   +  + G   +   V+K + YG G   IA  L   GV  F
Sbjct: 2   NQYYRVHAVIDLDAICHNIREVKRVVGEGVKVMPVIKADGYGHGAVPIAKELNKIGVDAF 61

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCG 119
            V  +EEG+ LR    +  I +L      Q   +    + P +         SK+  + G
Sbjct: 62  AVAILEEGITLRNNGIRQPILILGYTSEYQYSSLIQYEIEPTVFCYEMAESLSKIAQALG 121

Query: 120 VSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 +++DTG NR+G    +E++D           ++  I +H ACAD+        Q
Sbjct: 122 KDAKIHIKLDTGMNRIGFKPTKESVDIIEKIAKLPNIKIQGIFTHFACADEADKTETYEQ 181

Query: 179 LERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS-H 230
             ++   I+  +  +       +++S+ I+    +   + R GI  YG   +++++K   
Sbjct: 182 ERKYDQFITWLEERDIYIPIKHVSNSASIIDLDGFRKDMVRSGIITYGLYPSEEVSKDVL 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +  +  I+ I++  AGE +SY       + + IA   +GYADGYP +LS      
Sbjct: 242 DLRPAMELKTHIVYIKEVEAGEGISYNHTYVTDKKTKIATIPVGYADGYPRSLSS----- 296

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                  GK  I+G   PI+G+I MD  M D+TD   + V D + + G D    + +++V
Sbjct: 297 ------KGKVLIRGQYAPIIGRICMDQFMVDVTDIEGVSVMDEVTLVGHDGNKMLTVEEV 350

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +G+ NY+ +  IG R  + Y
Sbjct: 351 ANEAGSFNYEFVCGIGKRVPRVY 373


>gi|300854387|ref|YP_003779371.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
 gi|300434502|gb|ADK14269.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
          Length = 386

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 184/381 (48%), Gaps = 39/381 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +++L  L  N  ++ A +       VVK +AYG G  +++  L   G     V  + EG+
Sbjct: 11  EVNLDNLAYNMRNIKAQTMTKEIFGVVKADAYGHGALEVSKVLLENGATRLSVAVLSEGI 70

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPYA 125
           +LR       I +L G+ P      +   +L PV+ S      L+ Y+   +  V     
Sbjct: 71  ELRKGGITCPINIL-GVTPSTLFPDLIGYSLEPVVFSYEYAKSLSEYANSKNKKVK--VH 127

Query: 126 LQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           L VD+G  R+G      +++EA+  +  S      ++  + SH + AD+     +  Q +
Sbjct: 128 LAVDSGMGRIGFLPTEHNVEEAVKISKISNI----EIESVFSHFSTADEKDKKYSKFQFD 183

Query: 181 RFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PM 232
           ++R  ++  K  G+      +++S+ I+  P  +    RPGI LYG   +D+++KS   +
Sbjct: 184 KYRWFVNELKEKGLNIKIRDISNSAAIVDLPETYCDGVRPGIILYGYYPSDEVDKSRLDI 243

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T +A ++ ++    G+ V YG + K  R ++IA   +GYADGY   LSG       
Sbjct: 244 KPVMTLKASVVYLKTLNEGQYVGYGRRFKTERRTVIATLPVGYADGYTRILSG------- 296

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL----DDVAL 348
                 K  I G + P++G I MD  M D+TD   +++GD + + G D K+    +D+A 
Sbjct: 297 ----KLKVIINGKLAPVIGNICMDQCMIDVTDIEDVKIGDEVILMGSDGKVKFDAEDIAK 352

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT +Y++L  +  R  + Y
Sbjct: 353 LLGTISYEVLCMVNKRVPRVY 373


>gi|254304302|ref|ZP_04971660.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324494|gb|EDK89744.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 354

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 178/372 (47%), Gaps = 38/372 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L   GV+ F V ++EE 
Sbjct: 5   VEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L+    + +I +L G     E I      + V ISS+ QL F   L++  ++    L+
Sbjct: 65  IELQEAGIKDKILIL-GASFEDELIEATKRGVHVAISSMGQLHF---LVTNKLNPNIHLK 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE---RF 182
            DTG  RLG  + EA       F KK   L+L  I SHL+ +D  +       LE   +F
Sbjct: 121 FDTGMTRLGFEVDEAEKVIE--FCKK-NNLNLVGIFSHLSDSDGNTMETKIFTLEQINKF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHP-MQTVVT 237
           + +I+        +++S+GI    N+H      L R GI +Y  T   NK  P ++ + T
Sbjct: 178 KKIINSLNLEYVHISNSAGI---TNFHDDILGNLVRLGIGMYSFTG--NKKTPYLKNIFT 232

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++R++ I+K      VSYG    L  DS  AV  IGYADG    LS            G
Sbjct: 233 IKSRVLFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLSK-----------G 281

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G   I  +   I+G I MDMTM  I   +  SI++GD + +   DI LD++ +      +
Sbjct: 282 GYVLINNHRCEIIGNICMDMTMIRIPKEIENSIKIGDEVTVINADI-LDNLNIPELCV-W 339

Query: 356 DLLVRIGTRYAK 367
           + +  IG R  +
Sbjct: 340 EFMTGIGKRVKR 351


>gi|91215530|ref|ZP_01252501.1| alanine racemase [Psychroflexus torquis ATCC 700755]
 gi|91186482|gb|EAS72854.1| alanine racemase [Psychroflexus torquis ATCC 700755]
          Length = 367

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 165/376 (43%), Gaps = 35/376 (9%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+IDL AL+ N+  + + LS   +   VVK  AYG     I   L   GVQ   V  +E
Sbjct: 8   RLEIDLQALEYNYKLLKSYLSTKTKIMGVVKAFAYGTDSIIIGKHLVKIGVQHLAVAYIE 67

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EGV+LR    +A I V Y   P  E+I  + D  L P   SV    F   L      H  
Sbjct: 68  EGVRLRKAGVEAPILVFY---PQLEEIQKLIDFQLTP---SVYNHRFLEGLCEELALHEI 121

Query: 125 -----ALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+++TG NRLG  + +      H    +K+  + L     A  +         Q
Sbjct: 122 DSFGIHLKINTGLNRLGFEIDDLNTILQHLKAERKIKMVGLFTHLAASGNKDEVEFTKGQ 181

Query: 179 LERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           + +F      ++       E+ + +SSGIL  P+  + + R GI+LYG  +   +   ++
Sbjct: 182 ISKFEQARQFFENHLPYIFESHICNSSGILNYPDAEYDMVRAGIALYGYGNNPKEHKMLK 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V + +  I  +R    G+ V Y  + K  R++ IA   +GYADG   +           
Sbjct: 242 AVASLKTVIAQLRMIQKGDSVGYERKFKAERETKIATLPLGYADGISRS----------- 290

Query: 294 VFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
            F  GK    I     PI+G + MD  M D+T  +  E GD ++IFG +  + D  +   
Sbjct: 291 -FGNGKAQVLINHQKAPIIGNVCMDTLMLDVT-GIDCEEGDEVEIFGKNHTVLDFDIEQQ 348

Query: 352 TTNYDLLVRIGTRYAK 367
           T  Y+++ RI  R  +
Sbjct: 349 TIPYEVITRISQRVTR 364


>gi|307267174|ref|ZP_07548681.1| alanine racemase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917790|gb|EFN48057.1| alanine racemase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 384

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 179/388 (46%), Gaps = 49/388 (12%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R +I L  + +N   +    G   +   VVK NAYG G  ++A  L   GV    V ++E
Sbjct: 9   RAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACQVAKVLIENGVSYLAVATIE 68

Query: 67  EGVKLRL-----------YTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
           E ++LR            YTP  QA+  +++ I     + +FD N +  +  +       
Sbjct: 69  EALELRECGINIPILVIGYTPLTQAKELIVHNI----TQTVFDINYVKDLERIA------ 118

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
             ++ G      +++DTG  R+G + L+ A          +  ++  I SH A +D+ + 
Sbjct: 119 --LNVGKKAKVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKNK 176

Query: 173 HVNSVQLERFRTLISHYK--GIEASLA--SSSGILLGPNY-HFQLTRPGISLYGG--TDK 225
                Q + F+ L+   K  GI   L   ++SG ++   Y +  + RPGI LYG   +++
Sbjct: 177 TYAEKQFDMFKKLLERLKEKGINIPLKHIANSGAIIDLKYTYLDMVRPGIVLYGSYPSEE 236

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           + +   ++  +  + +I+ I++   G  +SYG      R S IA   +GYADG+   LS 
Sbjct: 237 VERPLDLKQTMGFKTKIVHIKEVPEGTSISYGRTFITKRKSKIATLPVGYADGFNRLLS- 295

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDI 341
            ++ H           +KG   P++G+I MD TM D+TD   +E+GD + IF    G  I
Sbjct: 296 -NNHHV---------LVKGKYAPVIGRICMDQTMIDVTDIEGVELGDDVVIFGNQEGEKI 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
             +++A    T  Y++   I  R  + Y
Sbjct: 346 TAEEIAKKLNTIPYEVYCGISRRVPRIY 373


>gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 813

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 175/375 (46%), Gaps = 35/375 (9%)

Query: 9   LKIDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L AL+   H++N   G    + +  A+VK  +YG G  +IA  L    V    V  
Sbjct: 457 LEINLNALE---HNLNVYRGLVPKDVKMMAMVKAFSYGSGSFEIANLLQFNQVDYLTVAY 513

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSH- 122
            +EGV+LR       I V+       E ++   NL P I S   L  F S +   G+ + 
Sbjct: 514 ADEGVELRNAGITLPIVVMSPDENAFESVV-QHNLEPEIYSFRILHAFISFVRIKGLKNF 572

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P  ++VDTG +RLG    EA         + + ++    SHLA A   +S  N+   E+ 
Sbjct: 573 PIHIKVDTGMHRLGFMPDEAEALIDILRQQDVVRVQSAFSHLASA--ANSQDNAFTAEQI 630

Query: 183 RTLISHYKGIEASL--------ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
             L    K ++  L        A++SGI L P+ +F + R GI +YG  +       +QT
Sbjct: 631 LKLDQFAKKLQQELGYSFLRHIAATSGIELWPSAYFDMVRLGIGMYG-VEASRTDLSLQT 689

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V   +  +  I+   A E V Y     L RDS IA   IGYADGY       D      V
Sbjct: 690 VGVLKTNVTQIKHIPASETVGYNRHGVLYRDSKIATIKIGYADGY-------DRRFGNGV 742

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              GK  + G++VP +G I MDM M D+TD +++   D + +F PDI     A + GT  
Sbjct: 743 ---GKMLVNGHLVPTVGDICMDMCMLDVTD-IAVSEEDEVVVF-PDITA--AANSIGTIP 795

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LLV I  R  + Y
Sbjct: 796 YELLVNISQRVKRVY 810


>gi|187928333|ref|YP_001898820.1| alanine racemase [Ralstonia pickettii 12J]
 gi|226711056|sp|B2UAX2|ALR_RALPJ RecName: Full=Alanine racemase
 gi|187725223|gb|ACD26388.1| alanine racemase [Ralstonia pickettii 12J]
          Length = 374

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 159/357 (44%), Gaps = 22/357 (6%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL NN       + N+R  AVVK NAYG G E++   L       F +  ++E V+LR  
Sbjct: 13  ALANNLQIARRHAPNSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLDLDEAVRLRQL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
             Q  + +L G   P    I+    L   +    QL         G +    L+++TG +
Sbjct: 71  GWQGPVLLLEGFFKPEDLAIVEQYRLTTTVHCEEQLRMLELARLKGPTS-VQLKINTGMS 129

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLI-ISHLACADDPSSHVNSVQLERFRTLISHYKGI 192
           RLG +   A            G  +++ ++H + AD P    +  QL  F        G 
Sbjct: 130 RLGFA-PAAYRAAWERARAISGVGTIVHMTHFSDADGPRGIEH--QLAAFERATQGLPG- 185

Query: 193 EASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVVTAEARIILIRK 247
           EASL++S+  L  P  H    RPG+ +YG +       I+ +  +   ++ ++ +I I+ 
Sbjct: 186 EASLSNSAATLWHPKAHRDWVRPGVIMYGASPTGVAADIDGTG-LMPAMSLKSELIAIQD 244

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G  + YG +  +     I V A GYADGYP    G D  H+P         + G   
Sbjct: 245 LQPGATIGYGSRFTVEHPMRIGVVACGYADGYPRHAPGWDGNHTPV-------LVDGVRT 297

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            I+G+++MDM   D+       VG  + ++G  + +DDVA ASGT  Y+L+  +  R
Sbjct: 298 HIVGRVSMDMITVDLAGVPEARVGTPVTLWGEGLPIDDVAQASGTVGYELMCALAPR 354


>gi|293609464|ref|ZP_06691766.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827916|gb|EFF86279.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 356

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 169/367 (46%), Gaps = 37/367 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 8   IDRNALQYNLNRVKQLATNSKIVSMVKANAYGHGIKDCLAAL-NAS-DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    Q  + ++ G+    E  I        +I    Q  +  K     ++    + V 
Sbjct: 66  IRELGFQQPVTLIEGVFSEDEMPIAIKQKFECIIHHQQQFEWLIKHKQAYINQGLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG    E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
               + AS  +S+ I   P  HF   RPGI LYG +   D+      ++ V+T  A +I 
Sbjct: 183 ACDPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADQTVHDLDLKPVMTFSAEVIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +      E V YG     T+   IA+ +IGY DGYP                  + +IK 
Sbjct: 243 LNHIQTNEHVGYGSTFCATQAMDIAIVSIGYGDGYP------------------RAYIKP 284

Query: 305 YMVPI-------LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
             V I       +G+++MDM   D+T  + +++G  ++++GP   +DDVA A+GT  Y+L
Sbjct: 285 NYVAIDKQPCAVVGRVSMDMIAIDVT-GMKVKLGTPVELWGPHRLVDDVADANGTIGYEL 343

Query: 358 LVRIGTR 364
           L R+  R
Sbjct: 344 LCRLSNR 350


>gi|310659416|ref|YP_003937137.1| alanine racemase [Clostridium sticklandii DSM 519]
 gi|308826194|emb|CBH22232.1| Alanine racemase [Clostridium sticklandii]
          Length = 384

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 176/373 (47%), Gaps = 26/373 (6%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  +K N++++  L     +  AV+K NAYG G  + A  L   G   F V   EE 
Sbjct: 11  EINLDHVKANYNNIRKLLKPETKFCAVIKANAYGHGAVQYAKVLDKEGADYFAVAVCEEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
           ++LR  +    I  L  +   + K +   N+   I S  +    S++     ++    ++
Sbjct: 71  LELRQNSITKPIMCLGYVPEDRFKDMMQNNVDITIYSYEKAALLSQIAKDNNLNAKIHIK 130

Query: 128 VDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLGL    EA+D        +  ++  I +H A ADD        Q + +  ++
Sbjct: 131 LDSGMSRLGLQCDNEAVDEILKISTLENLEIVGIFTHFALADDKDLSYTHEQYKNYSFVV 190

Query: 187 SHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSH-PMQTVVTA 238
           +    KG++     + +S+  ++ P YH  + RPGI LYG   +D ++KS   +   +  
Sbjct: 191 NELETKGLKIPIKHVCNSAATMMLPEYHLDMVRPGIILYGHYPSDDVDKSKVKLYPAMAL 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +  ++K   G  +SYG + +   + +IA   IGYADG+   LSG        V L  
Sbjct: 251 KSTVAHVKKLEEGRGISYGHKYRSKENEIIATIPIGYADGFTRMLSG-----QADVKLND 305

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS--GTTNYD 356
           K      MVP++G+I MD  M  + +    +VGD I IF  +  +D    A   GT NY+
Sbjct: 306 K------MVPVVGRICMDQCMLSLEE--EAKVGDQITIFSDEEGMDIERFAQRLGTINYE 357

Query: 357 LLVRIGTRYAKFY 369
           LL  +  R  + Y
Sbjct: 358 LLCMVQRRVPRIY 370


>gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 813

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 171/375 (45%), Gaps = 35/375 (9%)

Query: 9   LKIDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L AL+   H++N   G      +  A+VK  +YG G  +IA  L    V    V  
Sbjct: 457 LEINLNALE---HNLNVYRGLVPKEVKMMAMVKAFSYGSGSFEIANLLQFNQVDYLTVAY 513

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
            +EGV+LR       I V+       E ++   NL P I S   L  +   +      + 
Sbjct: 514 ADEGVELRNAGITLPIVVMSPDENAFESVV-QHNLEPEIYSFRILHAFISFVRIKDLKNF 572

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P  ++VDTG +RLG    EA         + + ++    SHLA A +P    N+   E+ 
Sbjct: 573 PIHIKVDTGMHRLGFMPDEAEALIDILRQQDVVRVQSAFSHLASAANPQD--NAFTAEQI 630

Query: 183 RTLISHYKGIEASL--------ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
             L    K ++  L        A++SGI L P+ +F + R GI +YG  +       +QT
Sbjct: 631 LKLDQFAKKLQQELGYSFLRHIAATSGIELWPSAYFDMVRLGIGMYG-VEASRTDLSLQT 689

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V   +  +  I+   A E V Y     L RDS IA   IGYADGY       D      V
Sbjct: 690 VGVLKTNVTQIKHIPASETVGYNRHGVLHRDSKIATIKIGYADGY-------DRRFGNGV 742

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              GK  + G++VP +G I MDM M D+TD +++   D + +F PDI     A + GT  
Sbjct: 743 ---GKMLVNGHLVPTVGDICMDMCMLDVTD-IAVSEEDEVVVF-PDITA--AANSIGTIP 795

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LLV I  R  + Y
Sbjct: 796 YELLVNISQRVKRVY 810


>gi|299139893|ref|ZP_07033065.1| alanine racemase [Acidobacterium sp. MP5ACTX8]
 gi|298598247|gb|EFI54413.1| alanine racemase [Acidobacterium sp. MP5ACTX8]
          Length = 385

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 167/382 (43%), Gaps = 37/382 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I    L  N+ ++ A++G    A AV+K NAYG G    AP L  AG Q   V+ V E
Sbjct: 5   IEISSARLAENFRAIQAVAGQGVEALAVIKANAYGHGTTICAPVLAEAGAQWLGVSDVAE 64

Query: 68  GVKLRLYTPQA--RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           G  +R   P +  R+ V+ G+       +    L PV+ +   +    +   S G     
Sbjct: 65  GEAVRTALPHSGIRVLVMCGMELADAPALVAHGLTPVVWTPEHIAALERAARSAGHRIQV 124

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+VDTG  R G +  E L  T  +  + +      I++HL C++   + +   Q ERF 
Sbjct: 125 HLEVDTGMGRQGAAPGEDLARTLEALADSRWVSCEGIMTHLCCSESAEAKITEEQRERFA 184

Query: 184 TLISHY--KGIEAS---LASSSGILLGPNYHF-----------QLTRPGISLYGGTDKIN 227
           + +      G+      LA++S +  G    +            + R G ++YG   +I 
Sbjct: 185 SALDQALAAGMRPEFVHLANTSAVDEGSTMQWIRDTAKSLGARAMVRIGFAIYGHCLEIE 244

Query: 228 KSHP--------MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
             H         +  V+  + RII +R   AG  V YG     T+   +A+  +GYADGY
Sbjct: 245 GEHAHAGALAPKVSPVLVWKTRIIGLRGVAAGATVGYGATFVATQPMRLALLPVGYADGY 304

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339
               S        S    G   I G   P++G+++M++T+ D++    ++ G    + G 
Sbjct: 305 RRAAS--------SGVGNGWVMIAGRRAPVVGRVSMNLTVVDVSGHADVQEGMEAVLLGE 356

Query: 340 DIKLDDVALASGTTNYDLLVRI 361
            +  +D A  SGT  YD+L  I
Sbjct: 357 GVTAEDQARWSGTIAYDILCGI 378


>gi|330821390|ref|YP_004350252.1| Alanine racemase [Burkholderia gladioli BSR3]
 gi|327373385|gb|AEA64740.1| Alanine racemase [Burkholderia gladioli BSR3]
          Length = 375

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 173/364 (47%), Gaps = 31/364 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I   A+++N   +   + ++R  AVVK NAYG G E+I P L  A      +  ++E V
Sbjct: 8   QIRPAAVRHNLAVIRRRAASSRVWAVVKANAYGHGIERIYPGLAEA--DGIALLDLDEAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           ++R       + +L G+    +  I D   + V    P+      L +   + P  +Q  
Sbjct: 66  RVRELGWTRPVLLLEGLFEAADVAIADRYRLSVAVHTPEQ--LDMLAAARPTRPIDIQLK 123

Query: 128 VDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++G NRLG      +EA  +   S    +G+++L++ H A AD+  +     Q++ F  
Sbjct: 124 MNSGMNRLGFRPDVYREA--WQRASTTPAVGRIALMM-HFANADEGQA---DWQMQVFDA 177

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEA 240
                 G E +L++S+G+L  P  H    RPG  LYG    G  +      +   +T  +
Sbjct: 178 ATQGLPG-ERTLSNSAGVLWHPAAHRDWVRPGTILYGASPTGVARDIADTGLLPAMTLSS 236

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I I+   A E V YG +   +    + V A GYADGYP         H+P+   G   
Sbjct: 237 RLIGIQTIEANETVGYGRRFAASSAMRVGVVACGYADGYP--------RHAPT---GTPI 285

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+T   +  +G  ++++G  + +D+VA A+ T  Y+L+  
Sbjct: 286 VVDGVRTRVVGRVSMDMLTVDLTPCPNARIGSPVELWGSQVHVDEVAEAASTIGYELICA 345

Query: 361 IGTR 364
           I  R
Sbjct: 346 IARR 349


>gi|254252040|ref|ZP_04945358.1| Alanine racemase [Burkholderia dolosa AUO158]
 gi|124894649|gb|EAY68529.1| Alanine racemase [Burkholderia dolosa AUO158]
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 166/362 (45%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++  AVVK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG S ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYSPEKYRAAWERARACPGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEARI 242
            +  G    LA+S+ +L  P+ HF   RPGI LYG +     S    T     +T  + +
Sbjct: 181 ENIAGTRC-LANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQSIAKGQSIGYGSTFSAQAPMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 AR 350


>gi|261493404|ref|ZP_05989930.1| alanine racemase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496669|ref|ZP_05993049.1| alanine racemase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307872|gb|EEY09195.1| alanine racemase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311048|gb|EEY12225.1| alanine racemase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 374

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 172/377 (45%), Gaps = 39/377 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   + + +   +  A++K NAYG G    A  L +  V  F V  + E ++
Sbjct: 8   IDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLPAAGTLADM-VDGFGVARLREALE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDTNLIPVISSVPQLT--------------- 110
           ++      +I ++ G    +E +      FDT    VI ++ QL                
Sbjct: 67  IQETGYTGKIVLVEGFFDREELLKTLSRKFDT----VIHNLEQLELLEQVAKEWQAEQQK 122

Query: 111 -FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
            F+++           L++DTG +RLG+  ++   F     N  L      +SH + AD+
Sbjct: 123 GFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVERLKNCALVNSISFVSHFSRADE 182

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
                   Q+  F      Y+  + S+++SSGIL     H+   RPGI ++G +      
Sbjct: 183 LDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYWKQAHYDWVRPGIIMHGISPHYTPI 242

Query: 230 HPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP       
Sbjct: 243 TDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVIAMGYGDGYP------- 295

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
             ++P    G    I G +VPI+G+++MDM   D+      +VGD    +G  + ++DVA
Sbjct: 296 -RNAPE---GTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKVGDKAIFWGEQLLIEDVA 351

Query: 348 LASGTTNYDLLVRIGTR 364
              G  +Y+L+ ++  R
Sbjct: 352 KHIGVISYELITKLTPR 368


>gi|326390394|ref|ZP_08211952.1| alanine racemase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993512|gb|EGD51946.1| alanine racemase [Thermoanaerobacter ethanolicus JW 200]
          Length = 384

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 177/388 (45%), Gaps = 49/388 (12%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R +I L  + +N   +    G   +   VVK NAYG G  ++A  L   GV    V ++E
Sbjct: 9   RAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACQVAKVLIENGVSYLAVATIE 68

Query: 67  EGVKLRL-----------YTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
           E ++LR            YTP  QA+  +++ I     + +FD N +  +  +       
Sbjct: 69  EALELRECGINIPILVIGYTPLTQAKELIVHNI----TQTVFDINYVKDLERIA------ 118

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
             ++ G      +++DTG  R+G + L+ A          +  ++  I SH A +D+ + 
Sbjct: 119 --LNVGKKAKVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKNK 176

Query: 173 HVNSVQLERFRTLISHYK----GIEASLASSSGILLGPNY-HFQLTRPGISLYGG--TDK 225
                Q + F+ L+   K     I     ++SG ++   Y +  + RPGI LYG   +++
Sbjct: 177 TYAEKQFDVFKKLLERLKEKRINIPLKHIANSGAIIDLKYTYLDMVRPGIVLYGSYPSEE 236

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           + +   ++  +  + +I+ I++   G  +SYG      R S IA   +GYADG+   LS 
Sbjct: 237 VERPLDLKQTMGFKTKIVHIKEVPEGTSISYGRTFITKRKSKIATLPVGYADGFNRLLS- 295

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDI 341
            ++ H           +KG   P++G+I MD TM D+TD   +E+GD + IF    G  I
Sbjct: 296 -NNHHV---------LVKGKYAPVIGRICMDQTMIDVTDIEGVELGDDVVIFGNQEGEKI 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
             D++A    T  Y++   I  R  + Y
Sbjct: 346 TADEIAKKLNTIPYEVYCGISRRVPRIY 373


>gi|39995713|ref|NP_951664.1| alanine racemase [Geobacter sulfurreducens PCA]
 gi|81832115|sp|Q74FK2|ALR_GEOSL RecName: Full=Alanine racemase
 gi|39982477|gb|AAR33937.1| alanine racemase [Geobacter sulfurreducens PCA]
 gi|298504725|gb|ADI83448.1| alanine racemase [Geobacter sulfurreducens KN400]
          Length = 382

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 172/381 (45%), Gaps = 36/381 (9%)

Query: 10  KIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++DL AL++N+   +  +       AVVK +AYG G   IA  L   GV  F V  + EG
Sbjct: 9   EVDLAALRHNYDLVVRTIPRGCGILAVVKADAYGHGFMDIARELETLGVTAFGVAFLAEG 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--- 125
           ++LR       + +L G++PGQE+     NL   + S+ Q    ++++       Y    
Sbjct: 69  IQLRKSGIDRPVLILGGVYPGQERKCVGFNLSTALFSLEQ----ARVLDDAAGRLYRRAR 124

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLE 180
              ++DTG  RLG+  +EA  F       K   L  IISH A A   D+     + +Q  
Sbjct: 125 VHAKIDTGMGRLGIPHEEASAFFSALRELKHLDLEGIISHFASADELDEDGRRYSDLQAS 184

Query: 181 RF--RTLISHYKGIEASLA--SSSGILLGPNYHF-QLTRPGISLYGG--TDKINKSHPMQ 233
           RF      + ++G E      ++S    G +  F  L RPGI LYG   +        ++
Sbjct: 185 RFAAAVAAARHEGFEPRYVHIANSAAAFGMDLPFCNLVRPGIVLYGALPSGDFEGKMALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            ++   + I +++    G  +SY  +       L+A   +GYADGY  +L+         
Sbjct: 245 PIMRLRSSIAMLKWVEPGTSISYARRFTAPDRRLVASIPVGYADGYSRSLTNR------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVAL 348
               G+  ++G   P++G + MD  M D+T    + VGD + + G D     ++ +++A 
Sbjct: 298 ----GEVVVRGRRAPVVGTVCMDWIMADVTHVSGVTVGDEVTLLGCDQEGNCVRAEELAE 353

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            +GT  Y++   I  R  + Y
Sbjct: 354 WAGTIPYEIFCGISKRVPRVY 374


>gi|322515165|ref|ZP_08068166.1| alanine racemase [Actinobacillus ureae ATCC 25976]
 gi|322118830|gb|EFX91025.1| alanine racemase [Actinobacillus ureae ATCC 25976]
          Length = 374

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 176/382 (46%), Gaps = 49/382 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I  + L++N   +   + + +  A++K NAYG G    A AL +  V  F V  + E ++
Sbjct: 8   ISQSVLRHNIELIKTFAPHQKLLAMIKANAYGQGLLPAAGALTDL-VDGFGVARLREALE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDTNLIPVISSVPQLT--------------- 110
           ++      +I ++ G    +E +      FDT    V+  + QL                
Sbjct: 67  IQETGYTGKILLVEGFFDREELLKTLSRRFDT----VVHCLEQLELLEQVAQEWQQEQQK 122

Query: 111 -FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHL 164
            F+ +           L++DTG +RLG+  ++      + F ++L    L+     +SH 
Sbjct: 123 GFWKRKAKIYFPVNVWLKIDTGMHRLGVHPEQV-----DMFYQRLQACPLVESISFVSHF 177

Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
           + AD+P       Q+  F    + Y   E S+++SSGIL     H+   RPGI ++G + 
Sbjct: 178 SRADEPDCGYTEKQIATFEAATAPYTTHERSISASSGILYWKQAHYDWVRPGIIMHGISP 237

Query: 225 KINKSHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                  +  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP  
Sbjct: 238 HYTPITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYP-- 295

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
                  ++P    G    + G + PI+G+++MDM   D+      +VGD +  +G D+ 
Sbjct: 296 ------RNAPE---GTPVLVNGRIAPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLL 346

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           +++VA   G  +Y+L+ ++  R
Sbjct: 347 IEEVAQHIGVISYELITKLTPR 368


>gi|182419267|ref|ZP_02950520.1| alanine racemase [Clostridium butyricum 5521]
 gi|237667853|ref|ZP_04527837.1| alanine racemase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376907|gb|EDT74478.1| alanine racemase [Clostridium butyricum 5521]
 gi|237656201|gb|EEP53757.1| alanine racemase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 388

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 175/388 (45%), Gaps = 51/388 (13%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL  N  ++ +L+ +    AVVK + YG G    AP L   G     V  + EG+
Sbjct: 11  EIDLDALAYNMKNIKSLAEDKEVIAVVKADCYGHGAIDTAPVLLENGASRLAVAVLTEGI 70

Query: 70  KLRLYTPQARIFVLYGIHP---GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS----H 122
           +LR     A I +L G  P   G+E I +D        +V  L +   L    +S     
Sbjct: 71  ELRKAKITAPIMIL-GYTPEYLGEELITYDIE-----QTVYSLEYAQNLSKTALSLNKKA 124

Query: 123 PYALQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVN 175
              + +DTG  R+G      SL+E  +         L  L +I   +H + AD+ +    
Sbjct: 125 KIHIALDTGMGRIGFMPNETSLKEVSEIC------SLPGLDVIGMFTHFSTADEENKDYT 178

Query: 176 SVQLERFRTLISHYKGIEASL----ASSSGILLGPNYHFQ---LTRPGISLYG--GTDKI 226
             Q +++   +     +  S+     S+SG ++     F+     R GI LYG   + ++
Sbjct: 179 LEQFDKYMNFLHELSKLNISIPLKHVSNSGAIMDMPETFKDLDAVRAGIILYGYYPSHEV 238

Query: 227 NKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            K +  ++  +T +A++  +++      +SYG   K  R S+IA   IGYADGY      
Sbjct: 239 KKENLSLKPALTIKAKVAHVKEMDENMYISYGRTFKTKRKSIIATIPIGYADGY------ 292

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DI 341
                S  +  G K  + G +VPI+G+I MD  M D+TD+ +++ GD + I G      I
Sbjct: 293 -----SRLLIPGAKVIVNGKLVPIVGRICMDQCMIDVTDAGTVKTGDEVIILGQFENLKI 347

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
             DD A   GT NY++L     R  K Y
Sbjct: 348 NADDYAQILGTINYEVLCMFKHRIPKVY 375


>gi|241662911|ref|YP_002981271.1| alanine racemase [Ralstonia pickettii 12D]
 gi|240864938|gb|ACS62599.1| alanine racemase [Ralstonia pickettii 12D]
          Length = 374

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 159/359 (44%), Gaps = 26/359 (7%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL NN       + N+R  AVVK NAYG G E++   L       F +  ++E V+LR  
Sbjct: 13  ALANNLQVARRHAPNSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLDLDEAVRLRQL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
             Q  + +L G   P    I+    L   +    QL         G   P ++Q  ++TG
Sbjct: 71  GWQGPVLLLEGFFKPEDLAIVEQFRLTTTVHCEEQLRMLELARPKG---PISVQLKINTG 127

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLI-ISHLACADDPSSHVNSVQLERFRTLISHYK 190
            +RLG +   A            G  +++ ++H + AD P    +  QL  F        
Sbjct: 128 MSRLGFA-PAAYRAAWERARAISGVGTIVHMTHFSDADGPRGIEH--QLVAFEQATQGLP 184

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVVTAEARIILI 245
           G EASL +S+  L  P  H    RPG+ +YG +       I+ +  +   +T ++ +I I
Sbjct: 185 G-EASLCNSAATLWHPKAHRDWVRPGVIMYGASPTGVAADIDGTG-LMPAMTLKSELIAI 242

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +    G  + YG +  +     I + A GYADGYP    G D  H+P         + G 
Sbjct: 243 QDLQPGATIGYGSRFTVEHPMRIGIVACGYADGYPRHAPGWDGNHTPV-------LVDGV 295

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              I+G+++MDM   D+       VG  + ++G  + +DDVA ASGT  Y+L+  +  R
Sbjct: 296 RTHIVGRVSMDMITVDLAGVPEARVGTPVTLWGEGLPIDDVAHASGTVGYELMCALAPR 354


>gi|228997192|ref|ZP_04156817.1| Alanine racemase [Bacillus mycoides Rock3-17]
 gi|229004853|ref|ZP_04162583.1| Alanine racemase [Bacillus mycoides Rock1-4]
 gi|228756406|gb|EEM05721.1| Alanine racemase [Bacillus mycoides Rock1-4]
 gi|228762586|gb|EEM11508.1| Alanine racemase [Bacillus mycoides Rock3-17]
          Length = 391

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 175/379 (46%), Gaps = 32/379 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++++L A+K+N         +   A  A VK N YG G  ++A A   AGV    V  V+
Sbjct: 11  VEVNLDAVKHNVREFKKRVNDKNIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHP---GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           EG++LR       I VL G  P    ++ I +D  ++  +  +  L   +++        
Sbjct: 71  EGIELREAGVTVPILVL-GYTPVEVAKDAIGYD--IMMTVYRIEDLKGINEIAKQLEKKA 127

Query: 124 Y-ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +  +++DTG +R+GL  +E   F     N K  ++  + +H + AD+ +    ++Q   F
Sbjct: 128 HIQVKIDTGMSRIGLQEEEVAPFLEELKNMKYIEIEGMFTHYSTADEINKIYTNMQTSLF 187

Query: 183 RTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
              ++  K +   L     ++S+G +   N    + R GI +YG        H    +Q 
Sbjct: 188 EKAVNAAKEMGIHLPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHTVVSLQP 247

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ ++++  I+ A     VSYG     T +  IA   IGYADGY   LS          
Sbjct: 248 ALSLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN--------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   I G  VP+LG++ MD  M D+T ++ ++VGD +  +G     +I ++++A   
Sbjct: 299 --KGHALINGIRVPVLGRVCMDQLMLDVTKAMPVQVGDEVVFYGRQGEEEISVEEIADTL 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++   +  R  + Y
Sbjct: 357 GTINYEVTCMLDRRIPRVY 375


>gi|227487051|ref|ZP_03917367.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093125|gb|EEI28437.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 377

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 179/381 (46%), Gaps = 33/381 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           E   L IDL A+ +N   +   +GNA   AVVK NAY  G + + P L  AG+  F V +
Sbjct: 11  ELTTLTIDLDAIASNAREVQKAAGNADVMAVVKANAYNHGVDLVVPVLEKAGIAGFGVAT 70

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + E  ++R  T    +  ++  HP Q+    + ++   ++S+ Q      L +       
Sbjct: 71  IPEARQVREVTELPVLAWIW--HPEQDLPRQEEHIDLGLASMAQA---RALAADPTPRTV 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
            L +DTG NR G+  +   +     F   +  L++  + +HLACAD+  + +   Q++  
Sbjct: 126 TLVIDTGLNRSGVDEENWEELCR--FVAGVPHLTVTGLFTHLACADEEDNPLTGEQVDTL 183

Query: 183 -RTL-ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQT 234
            R L ++   G+  +   +A+S G+L   +  F   RPG+ LYG +   +     + ++ 
Sbjct: 184 TRALAVARACGLNPTRNHVANSPGVLTKGDLGFSTVRPGLILYGYSPLREGDTAGYTLRP 243

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T  A + +++K  AGE  SYG       D   A+  +GYADG P  + G        V
Sbjct: 244 AMTWSAHVTIVKKIHAGEGASYGMTWHAPTDRYTAIVPVGYADGLPRRMQG-----KLEV 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALA 349
            +GGK +      P +G++ MD  + D+  +   +  GD   +FGP    ++ +D+ A  
Sbjct: 299 AIGGKRY------PQVGRVCMDQIVVDLGPEEPQVHPGDEAFLFGPGDHGEMTVDEWAEH 352

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
             T NY++L     R  + Y+
Sbjct: 353 LETINYEVLCSPRGRVQRTYS 373


>gi|164688224|ref|ZP_02212252.1| hypothetical protein CLOBAR_01869 [Clostridium bartlettii DSM
           16795]
 gi|164602637|gb|EDQ96102.1| hypothetical protein CLOBAR_01869 [Clostridium bartlettii DSM
           16795]
          Length = 387

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 178/386 (46%), Gaps = 52/386 (13%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  +K+N+HS+ N L  + +   VVK +AYG G  ++A  L       F V   EE 
Sbjct: 15  EINLNNIKHNFHSLKNTLKSDTKVCCVVKADAYGHGAVEVAKMLQQEKADYFSVARFEEA 74

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS---------CG 119
           V+LR       I  +          I + ++   I+    +T YS  M+          G
Sbjct: 75  VELRNNNIHTPILCM--------GYISECDIEEAINRYIGITVYSYEMAKIINQKAGKLG 126

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-----KKLGQLSL--IISHLACADDPSS 172
                 +++DTG +RLG    +      NS N     K+L  L++  I +H A AD+   
Sbjct: 127 KKASIHIKIDTGMSRLGFLTDD------NSINDILKLKELINLNIDGIYTHFATADETDK 180

Query: 173 HVNSVQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGG--TDK 225
               +QLER++ +I   +     +     ++++ I+      F + R GI LYG   +D+
Sbjct: 181 KETYLQLERYKKVIDVLEKANIDIQFKHVSNTAAIIDLKELGFNMVRLGIGLYGHYPSDE 240

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           ++K   ++  +  +  I  I+    G  VSYG   +    S +A  AIGYADG+  T   
Sbjct: 241 VSKEVELKPAMKLKTIITNIKTVAPGTKVSYGYTYEFKEASTLATLAIGYADGFDRT--- 297

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL-- 343
              +++P V       I G +  ++G+I MD  M  I + L++ + D + I G ++ +  
Sbjct: 298 ---QNNPKV------MINGILCDVVGRICMDQCMVKIPEGLNVNIEDEVLIMGAEVGVTA 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +D+A   GT NY++L  +  R  + Y
Sbjct: 349 EDLASRRGTINYEVLCSVSRRVTRDY 374


>gi|254524402|ref|ZP_05136457.1| alanine racemase [Stenotrophomonas sp. SKA14]
 gi|219721993|gb|EED40518.1| alanine racemase [Stenotrophomonas sp. SKA14]
          Length = 356

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 175/370 (47%), Gaps = 28/370 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L G  +  A++K +AYG G  + A AL       F V ++EE
Sbjct: 5   RALIDLGALRSNYRLARELGGG-KALAIIKADAYGHGAVRCAQAL-EGEADGFGVATIEE 62

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A I +L GI  P    ++ + +    + S  QL   +   S     P   
Sbjct: 63  ALELRQSGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSSWQLEALAAFDS---PRPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLERF 182
            L++D+G +RLGL + ++    H   +  L Q+  I+  +HLA AD+  S     Q   F
Sbjct: 120 WLKLDSGMHRLGLDV-DSFRAAHARLSA-LPQVERIVLMTHLARADELDSERTHEQAATF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAE 239
              I    G E S+ +S  +L  P+      RPG+ LYG     D    +  ++ V+T +
Sbjct: 178 ARAIDGLSG-ETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDNTALTERLRPVMTMQ 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I  R   AGE V YG +      + + V A+GYADGYP        + +P+   G  
Sbjct: 237 SKVIAERWIEAGEPVGYGARFVAKSRTRVGVVALGYADGYP--------QFAPN---GTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G    ++G+++MDM   D+T      +G  ++++G    L ++A   G + Y L  
Sbjct: 286 VLIDGQPGGLIGRVSMDMLTVDLTAHPQAGIGSVVELWGTAPTLSELAPRCGVSAYQLPC 345

Query: 360 RIGTRYAKFY 369
            +  R A+ Y
Sbjct: 346 AV-KRVARVY 354


>gi|227541786|ref|ZP_03971835.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182492|gb|EEI63464.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 368

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 179/381 (46%), Gaps = 33/381 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           E   L IDL A+ +N   +   +GNA   AVVK NAY  G + + P L  AG+  F V +
Sbjct: 2   ELTTLTIDLDAIASNAREVQKAAGNADVMAVVKANAYNHGVDLVVPVLEKAGIAGFGVAT 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + E  ++R  T    +  ++  HP Q+    + ++   ++S+ Q      L +       
Sbjct: 62  IPEARQVREVTELPVLAWIW--HPEQDLPRQEEHIDLGLASMAQA---RALAADPTPRTV 116

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
            L +DTG NR G+  +   +     F   +  L++  + +HLACAD+  + +   Q++  
Sbjct: 117 TLVIDTGLNRSGVDEENWEELCR--FVAGVPHLTVTGLFTHLACADEEDNPLTGEQVDTL 174

Query: 183 -RTL-ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQT 234
            R L ++   G+  +   +A+S G+L   +  F   RPG+ LYG +   +     + ++ 
Sbjct: 175 TRALAVARACGLNPTRNHVANSPGVLTKGDLGFSTVRPGLILYGYSPLREGDTAGYTLRP 234

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T  A + +++K  AGE  SYG       D   A+  +GYADG P  + G        V
Sbjct: 235 AMTWSAHVTIVKKIHAGEGASYGMTWHAPTDRYTAIVPVGYADGLPRRMQG-----KLEV 289

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALA 349
            +GGK +      P +G++ MD  + D+  +   +  GD   +FGP    ++ +D+ A  
Sbjct: 290 AIGGKRY------PQVGRVCMDQIVVDLGPEEPQVHPGDEAFLFGPGDHGEMTVDEWAEH 343

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
             T NY++L     R  + Y+
Sbjct: 344 LETINYEVLCSPRGRVQRTYS 364


>gi|89896768|ref|YP_520255.1| hypothetical protein DSY4022 [Desulfitobacterium hafniense Y51]
 gi|219667399|ref|YP_002457834.1| alanine racemase [Desulfitobacterium hafniense DCB-2]
 gi|89336216|dbj|BAE85811.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537659|gb|ACL19398.1| alanine racemase [Desulfitobacterium hafniense DCB-2]
          Length = 370

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 173/383 (45%), Gaps = 29/383 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +   +  +I+L AL+ N+  + AL+  +    +VK +AYG G  +   A Y  G + F
Sbjct: 1   MENRRPVWTEINLQALQRNYDRIQALT-ESEIMPIVKADAYGHGALQAVEAFYERGARRF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CG 119
            V  + E ++LR   P  ++ ++  +     + +   ++I  +  + Q    +K     G
Sbjct: 60  GVALLNEALELRRAYPDIKVMLIGSLPEESIETVVKEDIICGVYQLDQAVILAKEAERQG 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV 177
                 L+VDTG  R+G   +   D+       KL  L +  I +H A AD         
Sbjct: 120 KKAVIHLKVDTGMGRIGFREE---DWEELFGCTKLPGLYIEGIYTHFATADHSDLRFARE 176

Query: 178 QLERFRTLISHYKG----IEASLASSSGILLG-PNYHFQLTRPGISLYG--GTDKINKSH 230
           QL +F  +    K     I    A++SG LL  P  H  + RPGI LYG   +  +    
Sbjct: 177 QLRKFLVMCDKIKAQGIHIPIRHAANSGALLQLPEAHLDMVRPGIILYGLPPSQHVGNDL 236

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++ +A+I  I+    GE +SYG   +    + +A   +GYADG    LS      
Sbjct: 237 GLEPVLSWKAKISHIKVVPQGETISYGRTFRTAYPTRVATIPLGYADGLRRNLSN----- 291

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVAL 348
                  G+  IKG    ++G++ MD TM D+T    ++VGD + + G D   ++D   +
Sbjct: 292 ------KGEVLIKGRRTTMIGRVCMDQTMLDVTKIPEVQVGDVVTLLGMDGYERIDATEM 345

Query: 349 AS--GTTNYDLLVRIGTRYAKFY 369
           A    T NY+++  I  R  + Y
Sbjct: 346 AGWLDTINYEIVCGISKRVPRVY 368


>gi|302553591|ref|ZP_07305933.1| alanine racemase [Streptomyces viridochromogenes DSM 40736]
 gi|302471209|gb|EFL34302.1| alanine racemase [Streptomyces viridochromogenes DSM 40736]
          Length = 390

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 177/386 (45%), Gaps = 42/386 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N  ++ A +  A   AVVK  AYG G  + A A   AG       + EE
Sbjct: 18  RAEIDLAALRANVRALRAHAPGAALMAVVKSEAYGHGAVQCARAAVAAGADWLGTATPEE 77

Query: 68  GVKLRLYTPQARIFVLYGIH--PGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPY 124
            + LR      RI         P +E I  D ++ +  + ++ ++T  ++L   G     
Sbjct: 78  ALALRAAGLPGRIMCWLWTPGGPWREAIEADLDVSVSGMWALDEVTAAARL--AGRPARV 135

Query: 125 ALQVDTGFNRLGLS--------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            L+ DTG  R G          ++EAL     +  + L +++ + SH ACAD+P     +
Sbjct: 136 QLKADTGLGRNGCQPGDDWAELVREAL----RAEAEGLLRVTGLWSHFACADEPGHPSIA 191

Query: 177 VQLERFRTLISH--YKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q+  FR ++ H   +GI      +A+S   L  P  HF L R GI+LYG +       P
Sbjct: 192 AQIGLFREMVGHAEQQGIRPEVRHIANSPATLTVPESHFDLVRTGIALYGISPSPELGTP 251

Query: 232 ----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+T  A + L++    G  VSYG Q     ++ + +  +GYADG P       
Sbjct: 252 ADFGLRPVMTLSASLALVKHVPGGHGVSYGHQYVTPGETTLGLVPLGYADGIP------- 304

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKL 343
             H+ S    G   ++G    I G++ MD  + D+      E G    +FGP    +   
Sbjct: 305 -RHASSA---GPVLVEGKWRTIAGRVAMDQFVVDLGGD-EPEAGAEAVLFGPGDRGEPTA 359

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +D A A+GT  Y+++ RIGTR  + Y
Sbjct: 360 EDWAQAAGTIAYEVVTRIGTRVPRVY 385


>gi|309782168|ref|ZP_07676898.1| alanine racemase [Ralstonia sp. 5_7_47FAA]
 gi|308919234|gb|EFP64901.1| alanine racemase [Ralstonia sp. 5_7_47FAA]
          Length = 374

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 159/359 (44%), Gaps = 26/359 (7%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL NN       + N+R  AVVK NAYG G E++   L       F +  ++E V+LR  
Sbjct: 13  ALANNLQVARRHAPNSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLDLDEAVRLRQL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
             Q  + +L G   P    I+    L   +    QL         G   P ++Q  ++TG
Sbjct: 71  GWQGPVLLLEGFFKPEDLAIVEQYRLTTTVHCEEQLRMLELARPKG---PISVQLKINTG 127

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLI-ISHLACADDPSSHVNSVQLERFRTLISHYK 190
            +RLG +   A            G  +++ ++H + AD P    +  QL  F        
Sbjct: 128 MSRLGFA-PAAYRAAWERARAISGVGTIVHMTHFSDADGPRGIEH--QLVAFEQATQGLP 184

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVVTAEARIILI 245
           G EASL +S+  L  P  H    RPG+ +YG +       I+ +  +   +T ++ +I I
Sbjct: 185 G-EASLCNSAATLWHPKAHRDWVRPGVIIYGASPTGVAADIDGTG-LMPAMTLKSELIAI 242

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +    G  + YG +  +     I + A GYADGYP    G D  H+P         + G 
Sbjct: 243 QDLQPGATIGYGSRFTVEHPMRIGIVACGYADGYPRHAPGWDGNHTPV-------LVDGV 295

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              I+G+++MDM   D+       VG  + ++G  + +DDVA ASGT  Y+L+  +  R
Sbjct: 296 RTHIVGRVSMDMITVDLAGVPEARVGTPVTLWGEGLPIDDVAHASGTVGYELMCALAPR 354


>gi|260497955|ref|ZP_05816072.1| alanine racemase [Fusobacterium sp. 3_1_33]
 gi|260196516|gb|EEW94046.1| alanine racemase [Fusobacterium sp. 3_1_33]
          Length = 354

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 175/370 (47%), Gaps = 34/370 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  ++ N     VVK NAYGLG  +I   L   GV  F V ++EE 
Sbjct: 5   VEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSVEITKILQEIGVNFFGVANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L+    + +I ++ G     E I      + V ISS+ QL F   L++  ++    L+
Sbjct: 65  IELQEAGIKDKILII-GASFEDELIEATKRGVHVAISSMGQLQF---LVNNKLNPNIHLK 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QLERFRT 184
            DTG  RLG  + EA        N  L  L  + SHL+ +D  +    +    Q+E+F+ 
Sbjct: 121 FDTGMTRLGFEVDEAKKVIEFCKNNNL-NLVGVFSHLSDSDGNTVETKNFTLEQIEKFKK 179

Query: 185 LISHYKGIEASLASSSGILLGPNYHF----QLTRPGISLYGGTDKINKSHP-MQTVVTAE 239
           +I+        +++S+GI    N+H      L R GI +Y  T   NK  P ++ + T +
Sbjct: 180 IINPLNLKYIHISNSAGI---TNFHNDIVGNLVRMGIGMYSFTG--NKKTPYLKNIFTIK 234

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R++ I+K      VSYG    L  DS  AV  IGYADG    LS            GG 
Sbjct: 235 SRLLFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLSK-----------GGY 283

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
             I  +   I+G I MDMTM  I   +  S+++GD + +   DI LD++ +      ++ 
Sbjct: 284 VLINNHRCEIIGNICMDMTMIRIPKEIENSVKIGDEVTVINADI-LDNLNIPELCV-WEF 341

Query: 358 LVRIGTRYAK 367
           +  IG R  +
Sbjct: 342 MTGIGKRVKR 351


>gi|299769496|ref|YP_003731522.1| alanine racemase [Acinetobacter sp. DR1]
 gi|298699584|gb|ADI90149.1| alanine racemase [Acinetobacter sp. DR1]
          Length = 356

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 169/367 (46%), Gaps = 37/367 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK N YG G +    AL NA    F V  ++EG++
Sbjct: 8   IDRNALQYNLNRVKQLAANSKIVSMVKANGYGHGIKDCLAAL-NAS-DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    Q  + ++ G+    E  I  +     VI    Q  +  K     ++    + V 
Sbjct: 66  IRELGFQQSVTLIEGVFSEDEMPIAIEQKFECVIHHQQQFEWLIKYKQKYIAQGLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG  + E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKVTEIIEVIKTL--KAEGFTCVLAMHFANAD-VDHPLNEQQKQQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
             + + AS  +S+ I   P  HF   RPGI LYG +   DK      ++ V+T  A +I 
Sbjct: 183 ACEPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFSAEVIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +      E V YG      +   IA+ +IGY DGYP                  + +IK 
Sbjct: 243 LNHIQTNEHVGYGSTFCAKQAMDIAIVSIGYGDGYP------------------RAYIKQ 284

Query: 305 YMVPI-------LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
             V I       +G+++MDM   D+T  + +++G  ++++G    +DDVA A+GT  Y+L
Sbjct: 285 NYVAIDKQLCAVVGRVSMDMLAIDVT-GMQVKLGTPVELWGAHRLVDDVADANGTIGYEL 343

Query: 358 LVRIGTR 364
           L R+  R
Sbjct: 344 LCRLSNR 350


>gi|34499248|ref|NP_903463.1| alanine racemase [Chromobacterium violaceum ATCC 12472]
 gi|34105099|gb|AAQ61455.1| alanine racemase [Chromobacterium violaceum ATCC 12472]
          Length = 357

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 173/365 (47%), Gaps = 20/365 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +RL+I L A+++N+      S      AV+K NAYG G    A AL +     F + ++E
Sbjct: 5   IRLEISLPAIRHNFLFTRQHSQARSLFAVIKANAYGHGLLDTAKALADQ-ADGFALLNIE 63

Query: 67  EGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           + V+LR       I +L G     +   + D  L   + S  Q+ + +K  S        
Sbjct: 64  DAVRLREAGFDHPISLLEGPFDAAEAAAMADYRLGGAVHSQQQMDWLAK-GSADRPIDVW 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++++G NRLG   QEA             +L+ +++H A AD+   +  + Q  RF   
Sbjct: 123 LKINSGMNRLGFRPQEAAAAQARLQALPGARLTAVMTHFATADE--DYGVAEQWARFEP- 179

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARI 242
           ++   G++   A+S+ +L  P+ H  + RPGI LYG +   N++     +   +T  A I
Sbjct: 180 VAVASGLKVCAANSAALLRHPHTHGDIGRPGIVLYGASPFENETGAGLGLMPAMTLSADI 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +++   G+ V YG +    R   I V A GYADGYP   +            G    +
Sbjct: 240 IAVQQLQPGDAVGYGRRFIADRAMRIGVVACGYADGYPRVAAN-----------GAPAAV 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    + G+++MDM   DI+      VG  ++++GP+  ++ VA A+GT +Y+L+  + 
Sbjct: 289 DGQPCRLAGRVSMDMLTVDISHLPQAGVGSRVELWGPNAPIEKVAAAAGTISYELMSAVM 348

Query: 363 TRYAK 367
            R  +
Sbjct: 349 PRVPR 353


>gi|256826606|ref|YP_003150565.1| alanine racemase [Cryptobacterium curtum DSM 15641]
 gi|256582749|gb|ACU93883.1| alanine racemase [Cryptobacterium curtum DSM 15641]
          Length = 421

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 182/384 (47%), Gaps = 37/384 (9%)

Query: 9   LKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID +A+++N H +   L  N R  AVVK +AYG G  +++    N+G     V +V+E
Sbjct: 51  VEIDRSAIRHNLHEAKRRLQPNCRLMAVVKADAYGHGAVEVSRTALNSGADALAVATVDE 110

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
           G+ LR    +A I +L    P Q  I  + +  ++P +        Y ++     +  P+
Sbjct: 111 GIALREAGLRAPILLLS--EPPQAAIPLLLEYKIMPSVYRAEFALAYGEIADAHHLKAPF 168

Query: 125 ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L V+TG NR+G+  ++ L+F    SF++ L Q     +H A AD P +    +Q++RF 
Sbjct: 169 HLAVNTGMNRIGVHAEDILEFERQISFHRALEQEG-TFTHFATADCPENLDFRIQMKRFT 227

Query: 184 TLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVV 236
             I   +  GI+  +   A+S+ +L  P  HF + R GI++YG    ++      ++  +
Sbjct: 228 EAIEALRLAGIDPGIVHAANSAALLRYPESHFDMARIGIAMYGFHPCEETRDVVDLKPAM 287

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  ARI  IR    GE VSYG   +      I    +GYADG+   LSG       +V L
Sbjct: 288 SVYARITDIRNVSVGEGVSYGLNYRSPGSVRICTIPLGYADGFNRLLSG-----KVNVIL 342

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGPD----IKLDD 345
            G+   +      +G I MD  MF++          L+ ++GD + + G        + +
Sbjct: 343 DGQYCRQ------VGNICMDQCMFEVDMRTYGTHPRLNPQLGDIVTVVGNQGDAITTITE 396

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  + T  +++ +    R  + Y
Sbjct: 397 MAYLANTIEHEVAIGFAWRLPRLY 420


>gi|119358056|ref|YP_912700.1| alanine racemase [Chlorobium phaeobacteroides DSM 266]
 gi|119355405|gb|ABL66276.1| alanine racemase [Chlorobium phaeobacteroides DSM 266]
          Length = 376

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 180/382 (47%), Gaps = 44/382 (11%)

Query: 11  IDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  LK+N   +    G   R   +VK NAYG   +K+A  L   G+ DF V ++ E +
Sbjct: 15  ISLGHLKHNIREIKQCVGTGVRIMGIVKANAYGHNMQKVAETLEAEGISDFGVANIHEAI 74

Query: 70  KLR----LYTPQARIF---------VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           +L+    L  P A I          + Y +H   +  + D N++   S++ +   ++K +
Sbjct: 75  ELKTGGALKKP-ANILSFSSPIIQQIEYYLHHQIDMTLCDANIMKAASAIAEK--HNKKI 131

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             GV     L+VDTG  RLGL   +AL+    +  +   +L  + +H   A+  +     
Sbjct: 132 --GVH----LKVDTGMGRLGLPPLQALELLRETERQPGLELKGVYTHF--AESANDDFTR 183

Query: 177 VQLERFRTLISHYKGIEASL----ASSSGILL-GPNYHFQLTRPGISLYGGT--DKINKS 229
            Q + F+T+   Y+          A+SSG LL  P     + RPGI LYG      +  S
Sbjct: 184 RQFKEFKTMTDAYETASGKTLCKHAASSGTLLNNPEMRLDMVRPGILLYGYKPYPALPSS 243

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+  EA++I I+       +SY    K  R   IA  + GYADGY   LS     
Sbjct: 244 ITVRPVMQFEAKVIFIKTVAKDATISYNRTWKAARPVKIATISAGYADGYHRALS----- 298

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVAL 348
           +  +VF+ GK F +      +G +TMD  M D+     +++GD   +FG +   L+++A 
Sbjct: 299 NHATVFINGKSFQQ------VGTVTMDQFMVDLGTESDVKIGDRAILFGWEGPCLEELAG 352

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
           + G+ +Y+LL  + +R  + +T
Sbjct: 353 SIGSISYELLCSVSSRVKRVFT 374


>gi|150018925|ref|YP_001311179.1| alanine racemase [Clostridium beijerinckii NCIMB 8052]
 gi|149905390|gb|ABR36223.1| alanine racemase [Clostridium beijerinckii NCIMB 8052]
          Length = 387

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 173/382 (45%), Gaps = 38/382 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A+  N  ++  L  +    AVVK + YG G   + P L   G     V  + EG+
Sbjct: 11  EIDLDAIAYNIKNIKKLVKDKEIIAVVKADCYGHGALDVVPTLLENGASRLAVAVLTEGI 70

Query: 70  KLRLYTPQARIFVLYGIHP---GQEKIIFDTNLIPVISSVPQLTFYSKL----MSCGVSH 122
           +LR    +A I +L G  P    +E I +D        +V  L +  +L    +S     
Sbjct: 71  ELRNDNIKAPIMIL-GYTPSYLNEELIKYDLE-----QTVYDLDYAKELSKTALSLNKKA 124

Query: 123 PYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + +DTG  R+G L  ++A+D      + +  ++  I +H + +D+      + Q E+
Sbjct: 125 KIHIAIDTGMGRIGFLPTEKAIDAICKICSLEGLEVIGIFTHFSTSDEKDKEYTNEQFEK 184

Query: 182 FRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQ 233
           F  L+     +   +     ++S  I+  P  +    R GI LYG   + ++ K +  ++
Sbjct: 185 FTDLLKKLSNLNIEIPIKHVSNSGAIMDMPETYLDAVRAGIILYGYYPSPEVKKENLSLK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T +A I  +++  AG  +SYG      R SLIA   IGYADGY   L+         
Sbjct: 245 PALTLKATITRVQEMDAGMSISYGRTFNTERKSLIATIPIGYADGYSRLLAK-------- 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKL----DDVAL 348
                K  I G   PI+G+I MD  M DITD +  I+VGD + I G    L    D+ A 
Sbjct: 297 ---NAKVIINGQFAPIVGRICMDQCMIDITDINGDIKVGDEVIILGEQNGLRFNADNFAE 353

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
             GT NY++L  +  R  + Y 
Sbjct: 354 IMGTINYEILCMLKYRIPRVYV 375


>gi|294853873|ref|ZP_06794545.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
 gi|294819528|gb|EFG36528.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
          Length = 309

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 18/190 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L +  G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVNSVQ 178
           Q DTG +RLGLS +E        F++ L  ++L+        ISHLA  D+P +  N+ Q
Sbjct: 141 QFDTGMSRLGLSAKE--------FDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQ 192

Query: 179 LERFRTLISH 188
           L +   L++ 
Sbjct: 193 LAKMTALLAR 202


>gi|194477028|ref|YP_002049207.1| alanine racemase [Paulinella chromatophora]
 gi|171192035|gb|ACB42997.1| alanine racemase [Paulinella chromatophora]
          Length = 395

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 170/354 (48%), Gaps = 23/354 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +H  +   ++I+ +A++ N   ++ L +  ++  AVVK + YG G    A +    G   
Sbjct: 17  LHPRQRAWVEINRSAIEFNTRVLHKLIAPTSQLMAVVKADGYGHGALNAAESAQAGGASS 76

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS- 117
           + V +++EGV+LR    QA I VL  +   +E +      L+P IS++ +      L S 
Sbjct: 77  YGVATLQEGVQLRQGGIQAPILVLGNLIQSEELRACHHWRLMPTISTIREALICETLGSG 136

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVN 175
            G   P  L++DTG  RLG++ +E           K  +++ I SHLA AD  +      
Sbjct: 137 SGRIMPLHLKLDTGMTRLGVNWKEGSRIAKALSELKGIKIAGIYSHLAMADVSNKVETFT 196

Query: 176 SVQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGG--TDKINK 228
            +Q +RF  ++++      +     LA+S+G L     HF + R G++LYG   + K+  
Sbjct: 197 HLQKQRFLEVLNNLDNQNMNFGYRHLANSAGTLHDSGLHFDMVRVGLALYGQVPSSKLTS 256

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +   AR+ LIR+  +G  VSYG     +  S +AV +IGYADG P  LSG   
Sbjct: 257 ITNLKPALQLRARVTLIREVPSGVGVSYGHGHTTSIPSRLAVISIGYADGIPRVLSGQM- 315

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
                     +   KG  +  +GKITMD  + D T   S+ VG  + + G   K
Sbjct: 316 ----------QALFKGQRLQQVGKITMDQLILDCTSVKSLTVGSIVTLLGKSGK 359


>gi|297587277|ref|ZP_06945922.1| alanine racemase [Finegoldia magna ATCC 53516]
 gi|297575258|gb|EFH93977.1| alanine racemase [Finegoldia magna ATCC 53516]
          Length = 391

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 180/394 (45%), Gaps = 58/394 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LK+DL  LK+N+  +  +S   +  AVVK NAYG G   I   L   G+  F V+++ E 
Sbjct: 8   LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67

Query: 69  VKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH--- 122
           ++LR   ++ P   I +L          I + N+   I +  +LT Y    +  +++   
Sbjct: 68  LELRKNGIFKP---IMIL--------GYISNENIEVAIKNNIELTVYDYETAVEINNVAK 116

Query: 123 ------PYALQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSL--IISHLACADDPSS 172
                    +++DTG  RLG  ++   D       K  K+  + L  I SH + AD   S
Sbjct: 117 SLNKICKVHIKIDTGMTRLGFQVRLDKDKCLEEIFKIYKMDNVVLQGIYSHFSDAD---S 173

Query: 173 HVNSVQLERFRTLISHYKGIE--------ASLASSSGILLGPNYHFQLTRPGISLYG--G 222
              S   E++ T I     +E          +A+ +G ++   Y   + R GI LYG   
Sbjct: 174 EDYSYTKEQYNTYIGFMIDVENRGITVPIKHIANDAGAII-HGYFLDMIRCGIGLYGYHA 232

Query: 223 TDKI--NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           +D +  N    ++ + +    + +I+    G  + YG       ++++A A IGYADGYP
Sbjct: 233 SDYVRENSRLNLEEISSLYTTVSMIKTVPKGTDIGYGRTFTTNSETVVATATIGYADGYP 292

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
           L LS     +   V + GK         ILGK+ MD  M D+T    ++VGD I +FG D
Sbjct: 293 LELS-----NKAYVIINGKK------AKILGKVCMDQIMIDVTYIRDVKVGDKILLFGKD 341

Query: 341 ----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
               I L D+A  + T  Y+LL R+  R  + YT
Sbjct: 342 DMGEISLYDLAEMANTNVYELLCRVTMRIPRIYT 375


>gi|119713697|gb|ABL97747.1| alanine racemase [uncultured marine bacterium EB0_41B09]
          Length = 360

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 179/366 (48%), Gaps = 35/366 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+  IDL+AL +N   +  ++ N++  AV+K NAYG G  +   A+ +A  +   + ++E
Sbjct: 4   LKAYIDLSALTSNLKLVKKIAKNSKVMAVLKANAYGHGLIESVKAIKSA--EGIAILTIE 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQ-----EKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           E VK+R    +  I +L G+   +     EK+    NL  V+ +  Q+ + S +    + 
Sbjct: 62  EAVKIRKAGFKNTILLLEGLFAAEDIHQAEKL----NLNIVVHNDLQMDYLSDVT---LK 114

Query: 122 HPYA--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            P    L+++TG NRLG    +      N + N  + +++L+ +H A AD+        Q
Sbjct: 115 KPINVHLKINTGMNRLGFPPDQVDYLIENLNANPNVSEITLM-THFATADEKEGITK--Q 171

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235
           L+ F  + ++Y    +S+A+S+ +   P       RPGI LYG +   D   K   ++ V
Sbjct: 172 LDCFNRVTNNY-NFSSSVANSAALYKFPEARLDWVRPGIMLYGASPFEDISAKKIEVKPV 230

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  ++II I+    G+ V YG       D  I + A GY DGYP         H+ +  
Sbjct: 231 MSLVSKIIAIQDIKKGQAVGYGNNFIAKDDMRIGIVACGYGDGYP--------RHAKT-- 280

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   F+       +G+++MDM   D++      +G  ++++G  I +D+VA  SGT  Y
Sbjct: 281 -GTPIFVHNKTTKTVGRVSMDMLYVDLSKIEKAVIGSKVEMWGNHISVDEVAKNSGTVGY 339

Query: 356 DLLVRI 361
           +LL  I
Sbjct: 340 ELLCNI 345


>gi|223041769|ref|ZP_03611961.1| alanine racemase [Actinobacillus minor 202]
 gi|223017420|gb|EEF15839.1| alanine racemase [Actinobacillus minor 202]
          Length = 374

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 173/382 (45%), Gaps = 49/382 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  + E ++
Sbjct: 8   ISQEALRHNIQLIKTFAPKQKLLAMIKANAYGQGLLPAAGTLSDL-VEGFGVARLREALE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDTNLIPVISSVPQLT--------------- 110
           ++      +I ++ G    +E +      FDT    VI  + QL                
Sbjct: 67  IQETGYTGKIVLVEGFFDREELLKTLSRRFDT----VIHCLEQLELLEQVAKEWDEEQRK 122

Query: 111 -FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHL 164
            F+ +           L++DTG +RLG+  ++        F ++L   SL+     +SH 
Sbjct: 123 GFWKRKAKIYFPVHIWLKIDTGMHRLGVHPEQV-----EMFYQRLKACSLVASISFVSHF 177

Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
           + AD+        Q+  F      Y   E S+++SSGIL     H+   RPGI ++G + 
Sbjct: 178 SRADELDCGYTEKQIATFEAATKPYPEHERSISASSGILYWQQAHYDWVRPGIIMHGISP 237

Query: 225 KINK--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                 S   + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP  
Sbjct: 238 HYEPITSLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVIAMGYGDGYP-- 295

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
                  ++P    G    + G  VPI+G+++MDM   D+      +VGD +  +G D+ 
Sbjct: 296 ------RNAPE---GTPVLVNGRKVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLL 346

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           ++DVA   G  +Y+L+ ++  R
Sbjct: 347 IEDVAKHIGVISYELITKLTPR 368


>gi|328951278|ref|YP_004368613.1| Alanine racemase [Marinithermus hydrothermalis DSM 14884]
 gi|328451602|gb|AEB12503.1| Alanine racemase [Marinithermus hydrothermalis DSM 14884]
          Length = 364

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 169/373 (45%), Gaps = 35/373 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L AL +N   + A L       AV+K +AYG G   IA  L   GV+ F V +VEE
Sbjct: 6   LEIHLDALAHNLRVIRARLQPGTGIIAVIKADAYGHGAVPIAHELARLGVERFAVATVEE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G +LR    Q  + +L  +HP +     +  LIP +S++      +        H   ++
Sbjct: 66  GARLRQARIQHPVHLLGSLHPEEAAPALEHALIPTLSTLEAARAVAAHRPGATVH---VK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRTLI 186
            D+G  R+G+ L+    F        L ++  + +H A AD DP++     QLE F  + 
Sbjct: 123 ADSGMGRVGVPLEALRRFVEEVEAMGL-EVEGVFTHFASADEDPAA--TRRQLEAFLAVT 179

Query: 187 SHYKG-IEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARI 242
           + ++G  +   A+S+ +L  P  H    RPGI+LYG   G     +   +  ++  +A  
Sbjct: 180 APWRGRYKLHAANSAALLRFPEAHLDFVRPGIALYGLPPGEGFAREG--LWPILAWKAHP 237

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
            L+++   G+ + YGG     R+  IA   +GYADG+   LS              +G++
Sbjct: 238 TLVKRVQPGQRIGYGGTYTAQREEWIATLPLGYADGFSRALS-------------NRGWV 284

Query: 303 K--GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356
           +      P++G+++MD     +   + ++     ++  PD+     L   A   GT  Y+
Sbjct: 285 RLGSTYCPVVGRVSMDQITVRLPGPVGLDA--VFEVITPDLDARTSLTGRAAQLGTIPYE 342

Query: 357 LLVRIGTRYAKFY 369
           L   +  R  + Y
Sbjct: 343 LATLLSPRLPRVY 355


>gi|19703748|ref|NP_603310.1| alanine racemase, biosynthetic [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|23813647|sp|Q8RGA2|ALR_FUSNN RecName: Full=Alanine racemase
 gi|19713882|gb|AAL94609.1| Alanine racemase, biosynthetic [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 354

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 173/370 (46%), Gaps = 32/370 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L    V+ F V ++EE 
Sbjct: 5   IEIDKENLKYNVLKLKEIANNKEILGVVKANAYGLGSIEIAKILKEVEVKLFGVANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++L+    + +I +L      +        +   ISS+ QL F   L+S  ++    L+ 
Sbjct: 65  IELQEAGIKDKILILGASFEDELVEATKRGVHVAISSMGQLQF---LVSKNLNPNIHLKF 121

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QLERFRTL 185
           DTG  RLG  + +A        N  L  L  I SHL+ +D  +    +    Q+E+F+ +
Sbjct: 122 DTGMTRLGFEVDDAEKVIEYCKNNNL-NLVGIFSHLSDSDGNTIETKNFTLEQIEKFKKI 180

Query: 186 ISHYKGIEASLASSSGILLGPNYHF----QLTRPGISLYGGTDKINKSHP-MQTVVTAEA 240
           ++        +++S+GI    N+H      L R GI +Y  T   NK  P ++ + T ++
Sbjct: 181 VNSLNLEYIHISNSAGI---TNFHNDILGNLVRLGIGMYSFTG--NKKTPYLKNIFTIKS 235

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I+ I+K      VSYG    L  DS  AV  IGYADG    LS            GG  
Sbjct: 236 KILFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLSK-----------GGYV 284

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
            I  +   I+G I MDMTM  +   +  SI++GD + +   DI LD++ +      ++ +
Sbjct: 285 LINNHRCEIIGNICMDMTMIRVPKEIENSIKIGDEVTVINADI-LDNLNIPELCV-WEFM 342

Query: 359 VRIGTRYAKF 368
             IG R  + 
Sbjct: 343 TGIGRRVKRI 352


>gi|256390195|ref|YP_003111759.1| alanine racemase [Catenulispora acidiphila DSM 44928]
 gi|256356421|gb|ACU69918.1| alanine racemase [Catenulispora acidiphila DSM 44928]
          Length = 397

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 177/393 (45%), Gaps = 52/393 (13%)

Query: 10  KIDLTALKNNWHSMN---ALSGNARTA---AVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +IDL A+++N   +    A +G+   A   AVVK +AYG G    A A    G       
Sbjct: 20  RIDLDAIRSNTRRLGQIVAETGSKSAAGVMAVVKADAYGHGAVPCARAAKQGGAAWLGTA 79

Query: 64  SVEEGVKLR---LYTPQARIFVLYGIHPG----QEKIIFDTNLIPVISSVPQL--TFYSK 114
             EE ++LR   L  P     +L  +HP      E I+ +   I V +  P +     + 
Sbjct: 80  LPEEALQLRAAGLTGP-----ILAWLHPAGGPWDELIVHE---IDVTAYAPWVLEEITAA 131

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPS 171
              CG+     L+VDTG  R G    + L+    +   +     +++ + SH ACAD+P 
Sbjct: 132 AQRCGIQARVQLKVDTGLGRGGTQPHDWLELVELAAKAEAAGHIRVTGVWSHFACADEPG 191

Query: 172 SHVNSVQLERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGT--- 223
                 QL+ F   ++   + G+      +A+S   L  P  HF L R G+++YG +   
Sbjct: 192 HPSIRAQLDVFALALAAADHAGLRPEVRHIANSPAALSLPEAHFDLVRAGLAVYGLSPLP 251

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           D       ++  +T  AR+ L++ A A   VSYG        + +A+  +GYADG P   
Sbjct: 252 DTTPADFGLRPAMTLTARVALVKNAPAEHGVSYGHIHHTAGPTTLALVPLGYADGLPRNS 311

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---IEVGDYIQIFGP- 339
           S +           G+  + G    + G++ MD  + D+ D  +   + VGD + IFGP 
Sbjct: 312 SNV-----------GEVLVGGARHRVAGRMAMDQFVVDLGDPDAVHDVHVGDEVVIFGPG 360

Query: 340 ---DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              +   DD A A+GT NY+++ RIG R  + Y
Sbjct: 361 DRGEPTADDWAQATGTLNYEIVTRIGPRVPRVY 393


>gi|78186168|ref|YP_374211.1| alanine racemase region [Chlorobium luteolum DSM 273]
 gi|78166070|gb|ABB23168.1| alanine racemase [Chlorobium luteolum DSM 273]
          Length = 372

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 153/345 (44%), Gaps = 28/345 (8%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR----LYTPQARIFVLYGIHPG 89
           AVVK NAYG G  + A AL   G+  F V ++ E ++LR    L  P A I       P 
Sbjct: 36  AVVKANAYGHGARETARALLAEGIGHFGVANIHEAIELRTCGSLKRPAA-ILSFSSPLPS 94

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
           Q     +  +   +     L     + S  G +    L+VDTG  RLGLS  EA      
Sbjct: 95  QIPSYLEHGIEMTVCDPATLRAAEAVASGAGATIGVHLKVDTGMGRLGLSPAEAKQVLQE 154

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY-----KGIEASLASSSGIL 203
                  +L  I +H A +    +     QLE FR     Y     + +    A+S  IL
Sbjct: 155 LPRCPHIELRGIYTHFADSSFDRAFTRK-QLEAFRAFTGEYEHASGRRVLKHAANSGAIL 213

Query: 204 LGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQK 260
             P+  F + RPGI LYG     N +H    ++ V+  EAR++ ++   AG  +SY    
Sbjct: 214 SEPDATFDMVRPGILLYG-CHPSNDAHLRLDVKPVMQVEARVVFLKTVTAGTTISYNRTW 272

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
           K     +IA  A GYADGY  +LSG  +             I     P +G ITMD  M 
Sbjct: 273 KAAGPRIIATIAAGYADGYHRSLSGKATVS-----------INAITYPQVGTITMDQIMV 321

Query: 321 DITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTR 364
           D+     + VGD   +FG D ++ +++A  +GT +Y+LL  +  R
Sbjct: 322 DLGTESDVRVGDRAVLFGWDGMRAEELASRAGTISYELLTSVSAR 366


>gi|325954628|ref|YP_004238288.1| alanine racemase [Weeksella virosa DSM 16922]
 gi|323437246|gb|ADX67710.1| Alanine racemase [Weeksella virosa DSM 16922]
          Length = 824

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 169/376 (44%), Gaps = 32/376 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L  L++N  +  +L     +  A+VK N+YG+G  +IA  L    V    V   +E
Sbjct: 463 LEINLEHLEHNIQTYRSLLKPETKIMAMVKANSYGIGSFEIANVLQQMKVNFLGVAIADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEK--IIFDTNLIPVI--SSVPQLTFYSKLMSCGVSHP 123
           G +LR       I V+   +P Q     + D  L P I  + V QL F  KL    +S P
Sbjct: 523 GKELRKAGISTPIIVM---NPEQHSYATVIDYQLEPEIYTARVLQL-FLQKLQEKQISQP 578

Query: 124 YALQV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           + + +  +TG NRLG    +  +      +  L  +  I SHLA AD P+    + Q  +
Sbjct: 579 FPIHIKLETGMNRLGFKPNQLDELIEILRSTNLVYVRSIFSHLATADIPTEKDYAQQ--Q 636

Query: 182 FRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F    S Y  I   +         +S GI+  P + + + R GI +YG  +  +    ++
Sbjct: 637 FGVFNSSYHYITDKIGYYPIKHILNSPGIVAYPQHQYDMVRLGIGMYGYCEYSDFMQKLE 696

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            VV  +  I  I +   GE VSYG +    R S IA   +GYADG   +L          
Sbjct: 697 NVVQFKTVISQINEIEKGETVSYGRRFTAERHSRIATLPVGYADGIRRSLG--------- 747

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
            +   K  I G +   +G I MDM M D+TD +  + GD + IFG +  L   A    T 
Sbjct: 748 -YGNAKVNINGQLAATVGTICMDMMMVDVTD-IDCKAGDEVIIFGENPSLSKFAEWMQTI 805

Query: 354 NYDLLVRIGTRYAKFY 369
            Y++L  I +R  + Y
Sbjct: 806 PYEVLTSISSRVQRVY 821


>gi|33151809|ref|NP_873162.1| alanine racemase [Haemophilus ducreyi 35000HP]
 gi|71152228|sp|Q7VNC9|ALR_HAEDU RecName: Full=Alanine racemase
 gi|33148030|gb|AAP95551.1| alanine racemase [Haemophilus ducreyi 35000HP]
          Length = 374

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 174/378 (46%), Gaps = 41/378 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +  L+   +  A++K NAYG G    A  L +  V  F V  + E ++
Sbjct: 8   ISRQALRHNIQLIKKLAPKQKLLAMIKANAYGQGLLPAAATLADL-VDGFGVARLHEALE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-----FDT--------NLIPVISSVPQLT----FYS 113
           ++      +I ++ G    +E +      FDT         L+  ++   Q+     F+ 
Sbjct: 67  VQETGYTGKILLVEGFFDREELLKTLSRGFDTVIHCLEQLELLEQVAKEWQIEQQKRFWQ 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACAD 168
           +           L++DTG +RLG+   E +D     F  +L    L+     +SH + AD
Sbjct: 127 RKTKIYFPINIWLKIDTGMHRLGIH-PEQVDL----FYARLKSCPLVATISFMSHFSRAD 181

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
           +        Q+  F      Y     S+A+SSGIL  P  H++  RPGI ++G +     
Sbjct: 182 ELDCGYTEQQIATFEMATEQYSAHSRSIAASSGILYWPQAHYEWVRPGIIMHGISPHYQP 241

Query: 229 SHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +  + V+T  + +I IR   AGE V YGG     + + + V A+GY DGYP      
Sbjct: 242 ITQLGFKPVMTLSSTLIAIRSHKAGEPVGYGGAWISDKATTLGVVAMGYGDGYP------ 295

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
              ++P    G    I G +VPI+G+++MDM   D+      +VGD + ++G D+ ++ V
Sbjct: 296 --RNAPE---GTPVLINGRIVPIVGRVSMDMLTVDLGIDSQDQVGDEVILWGNDLLIETV 350

Query: 347 ALASGTTNYDLLVRIGTR 364
           A   G  +Y+L+ ++  R
Sbjct: 351 AQHIGVISYELITKLTPR 368


>gi|218133145|ref|ZP_03461949.1| hypothetical protein BACPEC_01007 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992018|gb|EEC58022.1| hypothetical protein BACPEC_01007 [Bacteroides pectinophilus ATCC
           43243]
          Length = 395

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 179/378 (47%), Gaps = 35/378 (9%)

Query: 11  IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L  ++ N  ++ AL+    +  AVVK +AYG G   +A A+ N  V  + V +VEEG+
Sbjct: 15  INLDNIEYNVRALMALTKPGTKAMAVVKADAYGHGDVAVAKAV-NDIVDAYAVATVEEGI 73

Query: 70  KLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    +  I VL Y      +++I     IPV  +       +  ++ G +    ++V
Sbjct: 74  NLRQNGIEKMILVLGYVDEMHYDQVIRYALSIPVFDTEMAKKMSAAAVAAGENIRCHVKV 133

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG +R+GL   +    T  +  K  G  +  I +H A AD+        Q E F+T + 
Sbjct: 134 DTGMHRIGLRPDDDGIKTVLALAKYDGLDVEGIFTHFATADEKDKTAAYRQFELFKTFVE 193

Query: 188 -------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237
                  H+K    S  +S+GI+  P+ +  + R GI++YG       SH    ++  + 
Sbjct: 194 KLENEGMHFKYRHCS--NSAGIIDMPDVNMDMVRLGIAMYGMYPSEEVSHDVVELKPAIE 251

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++ + +++    GE VSY G  +  R + +A    GY DGYP +LS             
Sbjct: 252 LKSSVTMVKTIQPGERVSYNGTFEAKRVTRLATIETGYGDGYPRSLS------------- 298

Query: 298 GKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
            KG+  I+G   PI G++ MD  M D+TD   +   D + + G D    I ++++A  +G
Sbjct: 299 NKGYVLIRGRKAPITGRVCMDQFMVDVTDIPDVGRLDEVTLIGRDGNEYISVEEIAALAG 358

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+ +  +G R  + Y
Sbjct: 359 TFNYEFVCDLGKRIPRNY 376


>gi|320334786|ref|YP_004171497.1| Alanine racemase [Deinococcus maricopensis DSM 21211]
 gi|319756075|gb|ADV67832.1| Alanine racemase [Deinococcus maricopensis DSM 21211]
          Length = 375

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 171/366 (46%), Gaps = 28/366 (7%)

Query: 8   RLKIDLTA--LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTS 64
           R + D+ A  L  N  ++  +SG    A V K +AYG G   +A AL +   V  F V  
Sbjct: 25  RARADIHAGHLVRNARALAQVSGTPLIAPV-KADAYGHGVNLVARALEDEPSVWGFAVAM 83

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
             E   L   T +  + ++    P +   + D  +   +SS  ++   + L +    H  
Sbjct: 84  PREAAALAPLT-RKPVLLMTPAAPEEVGPLADLGVRLSVSSAEEV---AALPAHARVH-- 137

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG NRLG    EAL     +  +  G L  + +HLACADDP   ++  Q+  F  
Sbjct: 138 -LKVDTGMNRLGAKPPEALRL--GAALEARGLLEGVYTHLACADDPDLRMSEAQIHAFAA 194

Query: 185 LISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYG-GTDKINKSHPMQTVVTAEARI 242
           + + +    A   + +G+L LG      L RPG++LYG   + +     ++  +   AR+
Sbjct: 195 VRAAFPAALAHAQNGAGVLALGRVPGLDLARPGLALYGYPPEHLRARAELRPAMRVTARV 254

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             +    AGE VSYG   +   D+ +A    GYADGYP   +G             +  +
Sbjct: 255 GFVHTVPAGESVSYGALWRAPEDTRVATVQFGYADGYPRGATGR-----------ARAVV 303

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-KLDDVALASGTTNYDLLVRI 361
           +G +  +LG+I MD  M D+   L + VG+++++FG D+    D+A  S    Y++L  I
Sbjct: 304 RGEVRDVLGRICMDQFMLDV-QGLDVRVGEWVEVFGWDVLSASDLAAWSDGIEYEVLTGI 362

Query: 362 GTRYAK 367
           G R  +
Sbjct: 363 GARVER 368


>gi|92114747|ref|YP_574675.1| alanine racemase [Chromohalobacter salexigens DSM 3043]
 gi|122419409|sp|Q1QU82|ALR_CHRSD RecName: Full=Alanine racemase
 gi|91797837|gb|ABE59976.1| alanine racemase [Chromohalobacter salexigens DSM 3043]
          Length = 364

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 174/378 (46%), Gaps = 47/378 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL+ N+      + ++R  AVVK +AYG G    A AL +     F V  +EE + 
Sbjct: 9   IDLDALRRNYCLARDQAPHSRAIAVVKADAYGHGAVACADALRDLAPA-FAVACLEEALT 67

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR       I +L G     E  + D + L   + S  Q+     L++     P    L+
Sbjct: 68  LREAGITQPIVLLEGFFDAAELSLIDAHRLWTAVHSDWQI---DALLAYRPRQPIPTWLK 124

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---------IISHLACADDPSSHVNSVQ 178
           +D+G +RLG        F   +F  +  +L+          +++H A AD     +++  
Sbjct: 125 LDSGMHRLG--------FAPEAFEARWQRLAAATEHVTDLHLMTHFATAD----ALDAAY 172

Query: 179 LERFRTLISHYKG-IEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
             R    I+  +  +EA   LA+S   L  P  H    RPG+ LYG +D +    + S  
Sbjct: 173 FRRQMACIASLRQRLEAPVCLANSPATLAWPEAHGDWNRPGVMLYG-SDPLEGANDASRA 231

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T  + II +R+   GE V YGG+ + +R S I V A GY DGY          H+
Sbjct: 232 LEPVMTLRSEIIAVRELAEGEAVGYGGRWRASRPSRIGVVAGGYGDGY--------DRHA 283

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                G    ++G  VP+ GK++MDM   D+T+     +G  + ++G  + +D+VA    
Sbjct: 284 RD---GTPVLVEGQRVPLAGKVSMDMLTVDLTELPEAGIGSPVVLWGEGLPIDEVARHCD 340

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y L+  +  R  + Y
Sbjct: 341 TISYTLMTGVLPRVPRRY 358


>gi|330684788|gb|EGG96481.1| alanine racemase [Staphylococcus epidermidis VCU121]
          Length = 382

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 183/390 (46%), Gaps = 46/390 (11%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L IDL A+ +N+ + + L  N    +V+K N YGLG  +IA  L   G   
Sbjct: 2   SEKFYRSTYLNIDLNAILSNYQTFDKLHANQTVISVIKANGYGLGSVRIAQHLMENGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           F V +++E ++LR++  +A+I +L  I P   K I       V  +VP  ++  + + + 
Sbjct: 62  FAVATLDEAIELRMHGIKAKILILGVIPP---KDINKAIQHRVALTVPSKSWLKESIKNI 118

Query: 119 GVSHPYA----LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACAD 168
              +  A    L++DTG  RLG+      +E +D        K  QL    + +H ACAD
Sbjct: 119 SDENEKALWLHLKLDTGMGRLGMKDVEEYKEVVDII-----SKYDQLVFEGVYTHFACAD 173

Query: 169 DPSSHVNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDK 225
           +P   + + Q ++F+ L+    K       +S+G LL         R GISLYG   ++ 
Sbjct: 174 EPGDSM-ATQYQKFKELVEQVEKPTYIHTQNSAGALLMDGQFCNAIRLGISLYGYYPSEY 232

Query: 226 INKSHPMQTVVTAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           + ++  +    +A+  + I+  +    G+ VSYG     T  + IAV  IGYADGY  ++
Sbjct: 233 VKENVKVHLKPSAQLVSEIVQTKTLNVGDSVSYGSTYTATEPTRIAVLPIGYADGYLRSM 292

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
                        G    + G+   ++G++ MD TM  I D  +++VGD + +    +  
Sbjct: 293 Q------------GSCVNVNGHQCEVIGRVCMDQTMVKIPD--TVKVGDKVILLDNHVDT 338

Query: 344 DD----VALASGTTNYDLLVRIGTRYAKFY 369
           D     +A    T NY++L  +  R  + Y
Sbjct: 339 DQSVEALAKQQDTINYEVLCNLSRRLPRIY 368


>gi|237740856|ref|ZP_04571337.1| alanine racemase [Fusobacterium sp. 4_1_13]
 gi|229431153|gb|EEO41365.1| alanine racemase [Fusobacterium sp. 4_1_13]
          Length = 356

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 177/371 (47%), Gaps = 34/371 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L   GV+ F V ++EE 
Sbjct: 5   IEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L+    + +I +L G     E I      + V ISS+ QL F   L+   ++    L+
Sbjct: 65  IELQEAGIKDKILIL-GASFEDELIEATKRGVHVAISSMGQLQF---LVDKNLNPNIHLK 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QLERFRT 184
            DTG  RLG  + EA        N  L  L  I SHL+ +D  +    +    Q+E+F+ 
Sbjct: 121 FDTGMTRLGFEVNEAEKVIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKFKK 179

Query: 185 LISHYK-GIE-ASLASSSGILLGPNYHF----QLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +++     +E   +++S+GI    N+H      L R GI +Y  T    K+  ++ + T 
Sbjct: 180 IVNSLNLNLEYIHISNSAGI---TNFHNDILGNLVRLGIGMYSFTGN-KKTSYLKNIFTI 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++R++ I+K      VSYG    L  DS  AV  IGYADG    LS            GG
Sbjct: 236 KSRVLFIKKVNKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLSK-----------GG 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
              I  +   I+G I MDMTM  I   +  SI++G+ + +   DI LD++ +      ++
Sbjct: 285 YVLINNHRCEIIGNICMDMTMIRIPKEIENSIKIGNEVTVINADI-LDNLNIPELCV-WE 342

Query: 357 LLVRIGTRYAK 367
            +  IG R  +
Sbjct: 343 FMTGIGKRVKR 353


>gi|160941522|ref|ZP_02088855.1| hypothetical protein CLOBOL_06421 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435548|gb|EDP13315.1| hypothetical protein CLOBOL_06421 [Clostridium bolteae ATCC
           BAA-613]
          Length = 394

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 176/389 (45%), Gaps = 43/389 (11%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           NE +R   +++DL  +  N   + A++G   + AAVVK + YG G   IAPA+   G   
Sbjct: 10  NEIMRDTVVEVDLDRIAFNVRQIKAMAGPGTQVAAVVKADGYGHGALGIAPAIMENGASL 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS- 117
             V ++ E V+L+   P   + ++ G+ P +    + +  +I  I ++ Q    ++L S 
Sbjct: 70  LAVATLSEAVELKQAYPGYPVLIM-GLTPDRLLPYVLEYGIIQTIDTLAQARLLNRLASE 128

Query: 118 ---CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                V H   ++ DTGF+R+G     E+LD      +    +   I SHLA  DD S+ 
Sbjct: 129 KKQQAVIH---IKYDTGFHRIGFPDCPESLDEIRQICSMPWLKPEGIYSHLALKDDQSNQ 185

Query: 174 VNSVQLERFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
           V      +FR  +     +E+         +A S   +  P Y   + R G  +YG    
Sbjct: 186 V------QFRCFMDAVNELESEGCHFRYKHIADSIAAVDFPEYRLDMIRAGAIVYGLKGF 239

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 ++  +T + RI  I   L G+ VSY       +D+ +A    GYADGYP  L G
Sbjct: 240 HKGQLDIRQALTFKTRISHITPVLKGQGVSYDYLWTAPQDTRVAALPFGYADGYPRNLRG 299

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DI 341
                   V L GK       VP++G I MD  M D+TD    ++GD + I+G      +
Sbjct: 300 -----KAMVTLRGK------QVPVIGVICMDQCMIDLTDVPEAQIGDQVIIYGDGSGNTL 348

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            +D V+  +GT   +++ R+  R  + Y 
Sbjct: 349 DIDAVSRLAGTNKNEIVARLTRRPPRIYV 377


>gi|159904188|ref|YP_001551532.1| alanine racemase [Prochlorococcus marinus str. MIT 9211]
 gi|159889364|gb|ABX09578.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9211]
          Length = 381

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 151/319 (47%), Gaps = 23/319 (7%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-K 92
           AVVK + YG G + +A +    G Q   V +++EG+ LR    ++ I +L  +   ++  
Sbjct: 40  AVVKADGYGHGAQTVAKSALEGGAQSLGVATLQEGIDLRQAGIKSPILLLGNLTNEEDLD 99

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
                NL+P IS   +     K+    V +    ++VDTG  RLG  L +A    +   +
Sbjct: 100 ACLSWNLMPTISDYREAVICHKIAEERVQTFAVHVKVDTGMTRLGCELSDAPSLLNFIDD 159

Query: 152 KKLGQLSLIISHLACADD----PSSHVNSVQLERFRTLISHY----KGIEASLASSSGIL 203
            +   L  + SHLA AD         V   Q ++F  L+       K I   LA+S+G L
Sbjct: 160 LRFLDLEGVYSHLALADGDFDGEGGRVTFHQKQKFDNLLKSISLKNKSIVRHLANSAGTL 219

Query: 204 LGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
                ++ + R GI+LYG +  + +     ++  +  +ARI LIR+  AG  VSYG    
Sbjct: 220 RDCGLYYDMVRVGIALYGYSPIESLKNDFSLEPALAVKARITLIREVPAGTGVSYGHTFI 279

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
               S +AV  IGYADG    LSG       SV + GK F      P +G ITMD  + D
Sbjct: 280 TKEQSRLAVVGIGYADGVGRALSG-----KISVLINGKLF------PQVGAITMDQLVID 328

Query: 322 ITDSLSIEVGDYIQIFGPD 340
           IT +L I VG+ + + G D
Sbjct: 329 ITGNLDISVGNVVTLLGFD 347


>gi|161524411|ref|YP_001579423.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|189350834|ref|YP_001946462.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|221198343|ref|ZP_03571389.1| alanine racemase [Burkholderia multivorans CGD2M]
 gi|221208282|ref|ZP_03581286.1| alanine racemase [Burkholderia multivorans CGD2]
 gi|221215437|ref|ZP_03588401.1| alanine racemase [Burkholderia multivorans CGD1]
 gi|160341840|gb|ABX14926.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|189334856|dbj|BAG43926.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|221164621|gb|EED97103.1| alanine racemase [Burkholderia multivorans CGD1]
 gi|221171930|gb|EEE04373.1| alanine racemase [Burkholderia multivorans CGD2]
 gi|221182275|gb|EEE14676.1| alanine racemase [Burkholderia multivorans CGD2M]
          Length = 356

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 167/362 (46%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++  AVVK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRYAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYAPEKYRAAWERARACPSIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEARI 242
           ++  G    LA+S+ +L  P+ HF   RPGI LYG +     S    T     +T  + +
Sbjct: 181 ANIAGARC-LANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLSSEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQSIGKGQAIGYGSTFSAPAPMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALSIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 AR 350


>gi|254468799|ref|ZP_05082205.1| alanine racemase [beta proteobacterium KB13]
 gi|207087609|gb|EDZ64892.1| alanine racemase [beta proteobacterium KB13]
          Length = 357

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 177/374 (47%), Gaps = 48/374 (12%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+  I+L   K+N + + +L+ +++  A +K NAYG G   +A A   A    F V ++E
Sbjct: 4   LKALINLDNAKHNLNYVRSLAPSSKIMATLKANAYGHGLTLMAGAFNEADA--FSVLTIE 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           + ++LR      +I +L G    ++ KI    +   V+ +  QL    +L       P+ 
Sbjct: 62  DAIELREAGFDKKILLLEGAFDEEDLKIAAAYHFNLVVHNDYQLALIRQL-------PHD 114

Query: 126 LQVD------TGFNRLGLSLQEALDFTHNSFNKKLGQLS--------LIISHLACADDPS 171
            Q+D      TG NRLG S+        N+ NK   QL         + +SH A AD   
Sbjct: 115 KQIDIHLKINTGMNRLGFSI--------NAVNKVYKQLKNDVRINEIVFMSHFANAD--K 164

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKS 229
           ++    Q +    L++ +     S+A+S+ ++     H    RPGI LYG T  D   K 
Sbjct: 165 TNGTDGQYQEIEKLMNDFNE-PFSIANSAALISDNKTHADWVRPGIMLYGATPFDFSQKI 223

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T  + +I I++   G+ V YG      +D  IA  A GYADGYP         
Sbjct: 224 PDLKPVMTLRSEVISIQEIKKGQGVGYGEDFIADKDMRIATVACGYADGYP--------R 275

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
           H+P+   G    I G     +G+++MDM   DITD  ++  G  ++++G  + +D+VA  
Sbjct: 276 HAPT---GTPVVIDGIKTKTVGRVSMDMLAVDITDLGNVNYGSMVELWGEQLSVDEVANN 332

Query: 350 SGTTNYDLLVRIGT 363
           + T  Y+LL  I +
Sbjct: 333 AKTVGYELLCAISS 346


>gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl]
 gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl]
          Length = 816

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 164/374 (43%), Gaps = 31/374 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + +DLTA+ +N  ++   +G      V+K + YG G  ++A A   AG +   V ++ EG
Sbjct: 455 VHLDLTAIADNVRALRNHAG-VPLMVVLKGDGYGHGAARVARAALQAGAEMLAVATLGEG 513

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
             LR     A I VL    P Q  E I  D  L        Q   ++  + CG      +
Sbjct: 514 RALRAQGIAAPILVLGYTPPWQAAEAIRLDLMLTLFDDDTAQ-ALHAAALECGRPARVHV 572

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG  RLGLS  E   F          +   + +H A AD+        QL RF+ ++
Sbjct: 573 KVDTGMARLGLSPAEVAPFLSRLRELPGIEPVALYTHFARADEADPTPTEQQLARFQAVL 632

Query: 187 SHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVT 237
           +     G+       A+S+  L  P  HF + RPG++ YG       + P    M+  ++
Sbjct: 633 ADLTAAGLRPPCVHAANSAATLRFPATHFDMVRPGLACYGLAP--GAAAPLLPGMRPALS 690

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++   AG  +SYGG     R S IA   +GYADG            SP     
Sbjct: 691 FYTEVAQVKDHPAGTPISYGGTFVTARPSRIATIPVGYADGL---------RRSPPWR-- 739

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            +  I+G   PI+G+I MD  M D+TD   +  GD + I G      I +D++A   GT 
Sbjct: 740 -EVLIRGQRAPIVGRICMDYAMVDVTDIPGVRRGDAVTIIGRQGDAVIGVDEIAGWLGTI 798

Query: 354 NYDLLVRIGTRYAK 367
           +Y++L  I  R  +
Sbjct: 799 SYEVLTGILPRVPR 812


>gi|296328108|ref|ZP_06870641.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154779|gb|EFG95563.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 354

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 172/370 (46%), Gaps = 32/370 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L    V+ F V ++EE 
Sbjct: 5   IEIDKENLKYNVLKLKEIANNKEVLGVVKANAYGLGSIEIAKILKEVEVKLFGVANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++L+    + +I +L      +        +   ISS+ QL F   L+S  ++    L+ 
Sbjct: 65  IELQEAGIKDKILILGASFEDELVEATKRGVHVAISSMEQLQF---LVSKNLNPNIHLKF 121

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QLERFRTL 185
           DTG  RLG  + +A        N  L  L  I SHL+ +D  +    +    Q+E+F+ +
Sbjct: 122 DTGMTRLGFEVDDAEKVIEYCKNNNL-NLVGIFSHLSDSDGNTIETKNFTLEQIEKFKKI 180

Query: 186 ISHYKGIEASLASSSGILLGPNYHF----QLTRPGISLYGGTDKINKSHP-MQTVVTAEA 240
            +        +++S+GI    N+H      L R GI +Y  T   NK  P ++ + T ++
Sbjct: 181 ANSLNLEYIHISNSAGI---TNFHNDILGNLVRLGIGMYSFTG--NKKTPYLKNIFTIKS 235

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I+ I+K      VSYG    L  DS  AV  IGYADG    LS            GG  
Sbjct: 236 KILFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLSK-----------GGYV 284

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
            I  +   I+G I MDMTM  +   +  SI++GD + +   DI LD++ +      ++ +
Sbjct: 285 LINNHRCEIIGNICMDMTMIRVPKEIENSIKIGDEVTVINADI-LDNLNIPELCV-WEFM 342

Query: 359 VRIGTRYAKF 368
             IG R  + 
Sbjct: 343 TGIGRRVKRI 352


>gi|312793010|ref|YP_004025933.1| alanine racemase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180150|gb|ADQ40320.1| alanine racemase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 390

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 173/381 (45%), Gaps = 38/381 (9%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL  L  N  ++   +    R  AVVK +AYG G  +I+  L   GV    V  ++E 
Sbjct: 13  EIDLDNLVYNLENIKKKILPQTRIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAIIDEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           ++LR +     I +L G  P +  E+++ +  +   + +  Q  + S+     G      
Sbjct: 73  LQLRHFNFDVPILIL-GFTPFELSEQVV-ENEISQTVYTYEQAYYLSQAAQKIGKKAKIH 130

Query: 126 LQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFR 183
           ++VDTG  R+G L   E++    N       +L  I SH + ADDP S H    Q  +F 
Sbjct: 131 IKVDTGMGRIGFLCCNESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDHFTHEQFMKFE 190

Query: 184 TLISH---------YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
             +           YK I    A+SS  +  P Y   + R G+ LYG   +  + +   +
Sbjct: 191 NFVKELNKNGVYFKYKHI----ANSSAAIRFPQYQLDVVRLGLILYGLYPSSSLKEHLSI 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+  T  G    H  
Sbjct: 247 KPVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGF--TRVGSSQRHV- 303

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                    IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A 
Sbjct: 304 --------LIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGRQGKNEILADHLAE 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+++     R  + Y
Sbjct: 356 QIGTINYEVVCSFSKRIPRVY 376


>gi|325122726|gb|ADY82249.1| alanine racemase 1, biosynthetic [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 356

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 168/367 (45%), Gaps = 37/367 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL NA    F V  ++EG++
Sbjct: 8   IDRNALQYNLNRVKQLATNSKIVSMVKANAYGHGIKDCLAAL-NAS-DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128
           +R    Q  + ++ G+    E  I        VI    Q  +  K     ++    + V 
Sbjct: 66  IRELGFQQPVTLIEGVFSEDEMPIAIKQKFECVIHHQQQFEWLIKHKQAYINQGLKVWVK 125

Query: 129 -DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            ++G NRLG    E ++       K  G   ++  H A AD     +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKDPEIIEVIKTL--KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIIL 244
               + AS  +S+ I   P  HF   RPGI LYG +   D+      ++ V+T  A +I 
Sbjct: 183 ACDPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADQTVHDLDLKPVMTFSAEVIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +      E V YG      +   IA+ +IGY DGYP                  + +IK 
Sbjct: 243 LNHIQTNEHVGYGSTFCAKQAMDIAIVSIGYGDGYP------------------RAYIKQ 284

Query: 305 YMVPI-------LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
             V I       +G+++MDM   D+T  + +++G  ++++GP   +DDVA A+GT  Y+L
Sbjct: 285 NYVAIDKQLCAVVGRVSMDMIAIDVT-GMQVKLGTPVELWGPHRLVDDVADANGTIGYEL 343

Query: 358 LVRIGTR 364
           L R+  R
Sbjct: 344 LCRLSNR 350


>gi|167563210|ref|ZP_02356126.1| alanine racemase [Burkholderia oklahomensis EO147]
 gi|167570394|ref|ZP_02363268.1| alanine racemase [Burkholderia oklahomensis C6786]
          Length = 356

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 171/365 (46%), Gaps = 34/365 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   + +++  A+VK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLTVVRRHAAHSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-LERFRTL 185
           +++G NRLG + ++    +        +GQ++L+ +H + AD      + +   ER    
Sbjct: 124 MNSGMNRLGYTPEKFRAAWERARACPGIGQITLM-THFSDADSERGVADQIATFERGAEG 182

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTVVTAE 239
           I+  +    SLA+S+ +L  P+ HF   RPGI LYG +      D  +K   ++  +T  
Sbjct: 183 IAGAR----SLANSAAVLWHPSTHFDWVRPGIMLYGASPSGRSADIADKG--LKPTMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG          I V A GYADGYP     +  E +P V     
Sbjct: 237 SELIAVQTLAKGQTVGYGSMFAAQDTMRIGVVACGYADGYPR----IAPEGTPVV----- 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 288 --VDGVRTRIVGRVSMDMITVDLTPVPQAGVGSRVELWGETLPIDDVAAQCGTVGYELMC 345

Query: 360 RIGTR 364
            +  R
Sbjct: 346 AVAPR 350


>gi|306835298|ref|ZP_07468326.1| alanine racemase [Corynebacterium accolens ATCC 49726]
 gi|304568818|gb|EFM44355.1| alanine racemase [Corynebacterium accolens ATCC 49726]
          Length = 365

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 168/383 (43%), Gaps = 44/383 (11%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            L+  IDL A+ +N   +    G + +   VVK +AYG G E++ P +  AG     V +
Sbjct: 1   MLKTTIDLAAIAHNVRLIKEKIGPDVKLMCVVKADAYGHGAERVVPVMLEAGADSIGVAT 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHP 123
           + E V+LR     + I         Q   + +  L   I  +V       KL+   +   
Sbjct: 61  LTEAVQLRRMGVDSPIAAWIW----QSDQVLEEALACGIQIAVNSPAQAQKLVEAEIPAE 116

Query: 124 YALQVDTGFNRLGLS----------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             ++V+TG +R G+           L+EA   T       LG    ++SH ACADDP + 
Sbjct: 117 IYIKVETGMHRSGVDKADWDEVFALLREAPHIT------VLG----LMSHFACADDPDNA 166

Query: 174 VNSVQLERFRTLI--SHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
            N  Q E FR  +  +H  G+E     LA+S   L  P+ HF+  R GI+ YG      +
Sbjct: 167 HNDAQEEEFRRALDAAHAAGLECPVNHLANSPATLSRPSAHFEQVRVGIACYGLEPIAGR 226

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
            H ++  +T    +  ++     E  SYG      +   +A    GYADG P    G   
Sbjct: 227 DHGLRPAMTWSGNVFGVKPIDKDEATSYGRTWSADKPGFLATVDCGYADGLPRAYQG--- 283

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDV 346
                + +G    I G + P +G++ MD  + D+ D+   I  GD + IFG   +   ++
Sbjct: 284 ----HLQVG----IDGRLYPQVGRVCMDQIVVDLGDNPHGIAPGDEVTIFGQGGMSATEL 335

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A GT NY+++ R   R  + Y
Sbjct: 336 ADAVGTINYEVVCRPAGRTEREY 358


>gi|206560472|ref|YP_002231236.1| alanine racemase [Burkholderia cenocepacia J2315]
 gi|198036513|emb|CAR52410.1| alanine racemase, catabolic [Burkholderia cenocepacia J2315]
          Length = 356

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 166/362 (45%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++  AVVK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG   ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYVPEKYRAAWERARACPGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEARI 242
            +  G   SLA+S+ +L  P+ HF   RPGI LYG +     S    T     +T  + +
Sbjct: 181 ENIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIAKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 GR 350


>gi|82703234|ref|YP_412800.1| alanine racemase [Nitrosospira multiformis ATCC 25196]
 gi|123544120|sp|Q2Y763|ALR_NITMU RecName: Full=Alanine racemase
 gi|82411299|gb|ABB75408.1| alanine racemase [Nitrosospira multiformis ATCC 25196]
          Length = 357

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 172/363 (47%), Gaps = 22/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N   +   +  +R  AV+K +AYG G    A     A  + F +  ++  V+
Sbjct: 9   IDPAALERNLAIVRRHAPRSRVMAVIKADAYGHGLLCAA--EALAEAEGFALLELDAAVR 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L G     E   I    L  V+    QL     +        + L+++
Sbjct: 67  LREAGYRQTILLLEGFFDIDELSWIEQYRLSTVVHHPEQLAMLEAVRRRATLDVF-LKLN 125

Query: 130 TGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-SVQLERFRTLIS 187
           +G NRLG +  E      H   N  + Q++L+ +H ACAD+P  + + + QL+ F  L +
Sbjct: 126 SGMNRLGFTPTEFPAALEHLKANPAVRQITLM-THFACADEPDRNDSIAAQLQCF-NLAA 183

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIIL 244
             + +  SLA+S+ IL  P  H    RPGI LYG +   + +     +Q  +T  +RII 
Sbjct: 184 GGRYMPRSLANSAAILRFPEAHADWVRPGIMLYGSSPLAHTTAEQLGLQPAMTVSSRIIS 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++     + V YG   +      + + A GYADGYP         H+P+   G    +KG
Sbjct: 244 VQTLRPNDGVGYGHAFRAGSSMRVGIVAGGYADGYP--------RHAPT---GTPVLVKG 292

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
               I+G+I+MDM   D+++     VG  + ++G  + +D+VA A+GT  Y+LL  I  R
Sbjct: 293 RRTRIVGRISMDMLHVDLSEIEDAGVGSPVTLWGRGMPVDEVARAAGTLGYELLCAIAPR 352

Query: 365 YAK 367
             +
Sbjct: 353 MQR 355


>gi|312876893|ref|ZP_07736869.1| alanine racemase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796304|gb|EFR12657.1| alanine racemase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 390

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 172/380 (45%), Gaps = 38/380 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL  L  N  ++   +    R  AVVK +AYG G  +I+  L   GV    V  ++E +
Sbjct: 14  IDLDNLVYNLENIKKKILPQTRIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAIIDEAL 73

Query: 70  KLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           +LR +     I +L G  P +  E+++ +  +   + +  Q  + S+     G      +
Sbjct: 74  QLRHFNFDVPILIL-GFTPFELSEQVV-ENEISQTVYTYEQAYYLSQAAQKIGKKAKIHI 131

Query: 127 QVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRT 184
           +VDTG  R+G L   E++    N       +L  I SH + ADDP S H    Q  +F  
Sbjct: 132 KVDTGMGRIGFLCCNESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDHFTHEQFMKFEN 191

Query: 185 LISH---------YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
            +           YK I    A+SS  +  P Y   + R G+ LYG   +  + +   ++
Sbjct: 192 FVKELNKNGVYFKYKHI----ANSSAAIRFPQYQLDVVRLGLILYGLYPSSSLKEHLSIK 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+  T  G    H   
Sbjct: 248 PVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGF--TRVGSSQRHV-- 303

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                   IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A  
Sbjct: 304 -------LIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGRQGKNEILADHLAEQ 356

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++     R  + Y
Sbjct: 357 IGTINYEVVCSFSKRIPRVY 376


>gi|170780960|ref|YP_001709292.1| putative alanine racemase fusion protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155528|emb|CAQ00640.1| putative alanine racemase fusion protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 578

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 180/379 (47%), Gaps = 33/379 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL A+++N  ++ AL+  ART   VK +AYG G  ++A A   +G +   V  V  
Sbjct: 19  RAVIDLDAIRHNVRTLAALAAPARTMVAVKADAYGHGALQVARAALESGAESLAVLDVAS 78

Query: 68  GVKLRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            V+LR     AR+   L+G+     ++  +  +   +S++ +L   +    + G+     
Sbjct: 79  AVELRRAGIDARLLAWLHGVD-TDFRVAVEEEIDLGVSALWELKRIAAAGRATGIRARVH 137

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           L+ DTG +R G + +   D    +      G+L+L  + SHLA   D S   +   L RF
Sbjct: 138 LKADTGLSRNGATPELWPDLVRAAVAADSAGELTLHALWSHLA---DASPEDDDAALARF 194

Query: 183 RTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQT 234
           R  +        + +E  LA+SS  +  P   F + R GI++YG +   D+  +   +  
Sbjct: 195 REAVRVAEELGARPVEKHLAASSAGIRLPAARFDMVRFGIAVYGISPFDDRSGRDLGLIP 254

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T EA ++ +++  AG  VSYG   +    S + +  +GYADG P   +        SV
Sbjct: 255 AMTLEADVVSVKRVEAGHGVSYGLDHRTAGPSTLVLVPLGYADGIPRIAA-----PRASV 309

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
            L G+ F      P+ G+I MD  + D+ D L +EVGD   I GP    +   ++ A  +
Sbjct: 310 LLNGRRF------PVAGRIAMDQLVLDVGD-LPVEVGDTAVILGPGDRGEPTAEEWAGWA 362

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T   +++ R+G R  + +
Sbjct: 363 ETIGDEIVTRVGPRVDRVH 381


>gi|197123899|ref|YP_002135850.1| alanine racemase [Anaeromyxobacter sp. K]
 gi|196173748|gb|ACG74721.1| alanine racemase [Anaeromyxobacter sp. K]
          Length = 395

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 157/373 (42%), Gaps = 29/373 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL +N   + A +  AR  AVVK NAYG G      A   AG     V  V+E  
Sbjct: 19  EIDLDALAHNVRLLAARASPARLYAVVKANAYGHGAVACGRAALEAGAHGLAVVCVDEAE 78

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQV 128
           +LR    +A + V+          +    L P + ++  +   S +    G   P  L++
Sbjct: 79  ELRRAGVEAPLLVIGNTPASDAARVVALRLRPAVGAMDLVEALSAEARRRGAEVPIHLEL 138

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           ++G NR GLS    +     +      ++  + +H A A++        Q E  R     
Sbjct: 139 ESGLNRHGLSPDALVALAERARALPGLRVEGLFTHFAAAEEGDQRFTRAQFEVLRETSRR 198

Query: 189 YKGI-EASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHPMQTVVTAEA 240
              + E   A+S+ ILL      +  R G+SLYG       GTD       ++ V++  A
Sbjct: 199 LPWVPERHCAASASILLDHEMALEAVRGGLSLYGYRPAPWCGTDA-----DLRPVMSLRA 253

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  +     G  V YG      R + +A+   GYADGY  +                + 
Sbjct: 254 RVARVSDVDRGATVGYGRTWAANRPTRVALVMCGYADGYRRSFGNRT-----------QV 302

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            + G   P++G++ MDM M D+T    +  GD + + G D    +  DD+A  + T +++
Sbjct: 303 LVHGRRAPVVGRVAMDMCMVDVTAVPGVAAGDVVTLIGRDGDERVDADDLATIADTISWE 362

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 363 ILAGISARVPRLY 375


>gi|149926132|ref|ZP_01914394.1| alanine racemase [Limnobacter sp. MED105]
 gi|149824950|gb|EDM84162.1| alanine racemase [Limnobacter sp. MED105]
          Length = 365

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 170/368 (46%), Gaps = 23/368 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  +   A+  N + +  L GN     VVK N YG G E+I   L+ A      +  +E
Sbjct: 5   IRAVVKPAAISANINRIKELLGNVVMMPVVKANGYGHGLERIIDGLWQADA--LAILEIE 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
              +LR       I +L G     + +   +     V+ +  QL   + +     +H   
Sbjct: 63  GAARLRCMGWNKPIVLLEGCFDQTDLLKAMELRCDWVVHNQNQLNDLAAIAQWQPAHKPQ 122

Query: 126 --LQVDTGFNRLGLSLQEALDFTH--NSFN-KKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L+++TG NRLG    +A       + F  K      ++++H A AD+          +
Sbjct: 123 IFLKLNTGMNRLGFQPAQAQAAIQWLDEFTLKHQWPTPVLMTHFANADEAEPRARLPFAQ 182

Query: 181 RFRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVV 236
           R   ++   K     +SLA+S+G L  P     + RPGI++YG T   N +  + ++  +
Sbjct: 183 RQHQILMDLKPDHWRSSLANSAGSLNFPMLAGDIARPGIAIYGATPGPNAAANYGLKAAM 242

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              + II I++   G+ V YG + + +    IAV A GYADGYP         H+P    
Sbjct: 243 IFSSEIIAIQEVKQGDRVGYGSRWEASDSGRIAVVACGYADGYP--------RHAPD--- 291

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G   +++G++ P+ G+++MDM   D++   + +VG  ++++G  I +D VA   GT  Y+
Sbjct: 292 GTPTYVEGHVAPVAGRVSMDMMTIDVSHIPNAKVGSTVELWGEHIPVDVVADRCGTIGYE 351

Query: 357 LLVRIGTR 364
           LL  I  R
Sbjct: 352 LLCAIAPR 359


>gi|313157382|gb|EFR56805.1| alanine racemase [Alistipes sp. HGB5]
          Length = 792

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 169/378 (44%), Gaps = 36/378 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL A+ +N +   + LS   R  A+VK  +YG G  ++A  L + GV    V   +E
Sbjct: 431 LEVDLDAMIHNLNYFRSKLSFGTRLVAMVKAGSYGAGDFEVAQMLQHQGVDYLAVAFADE 490

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVS-HPYA 125
           GV LR       I VL         ++    L P I S   L  F   +   G S +P  
Sbjct: 491 GVLLRERGISMPIVVL-NADADSFDVMIANRLEPEIYSFHSLGAFADAVTHAGESRYPIH 549

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +RLG   QE              + + + SHL CAD P     +      R  
Sbjct: 550 VKLDTGMHRLGFVEQEIAQLCATLAATPQVKAASVFSHLNCADMPEEDAYT------RAQ 603

Query: 186 ISHYKGIEASLASS------------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           I+ Y  + A LA+S            + I   P   F + R G+ LYG   + N +  ++
Sbjct: 604 IALYDRMSAQLAASLPYPVIRHTANSAAIERFPEAQFDMCRLGLGLYGFGFRHNDA--LR 661

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V T + RI+ I++  AG+ V YG   KLTR +  A   IGYADG    L         S
Sbjct: 662 PVSTLKTRIVQIKRLPAGDAVGYGRAGKLTRPTTTATIPIGYADGLDRHLGC----GRWS 717

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLDDVALASG 351
           V + G+        PI+G++ MD  M DITD   ++ GD + +F   P   L+ +A    
Sbjct: 718 VLVAGQP------APIIGRVCMDSCMIDITDIPGVKEGDEVSVFSPVPGNDLETMARVLD 771

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y+++  +  R  + Y
Sbjct: 772 TISYEIMTSVSGRVKRIY 789


>gi|313899530|ref|ZP_07833039.1| alanine racemase [Clostridium sp. HGF2]
 gi|312955637|gb|EFR37296.1| alanine racemase [Clostridium sp. HGF2]
          Length = 388

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 182/395 (46%), Gaps = 41/395 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           + SN    L+IDL  + +N   +  L    ++  A+VK N YG G  + +  +   G+  
Sbjct: 8   LKSNTRSWLEIDLNRISHNIKEVQKLIPSTSKIMAIVKANGYGHGDVECSRMMEQQGIDF 67

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLM 116
           F V+SV+EGV+LR    Q+ I VL    P     + + +LI  + S     +L  Y+K  
Sbjct: 68  FGVSSVDEGVRLRENGIQSPILVLGYTPPVHFHYLNEASLIQTLVSKEYAEKLNAYAKEQ 127

Query: 117 SCGV-SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-----IISHLA---CA 167
           +  V +H    +VDTG +R+G+  Q+     H    K L +L       I SH +   C 
Sbjct: 128 NVVVKAHA---KVDTGMSRIGIIAQDHA--YHIEDIKALYRLEYLDVCGIFSHFSVSDCL 182

Query: 168 DDPSSHVNSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGG 222
           D+ +    + Q+  F  +++  +  GI+     L +S GIL  PN H+   RPG+   G 
Sbjct: 183 DEENCAFTNHQIALFERVLADLRAEGIDPGTTHLQNSYGILNYPNLHYDYVRPGLLWMGV 242

Query: 223 TDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
           T      I  +   Q ++  +A + L++    G  VSYG   K    + +A  A+GYADG
Sbjct: 243 TSDDALAIRTAPQFQPIMEWKANVSLVKDIQPGVTVSYGRHFKAEVCTRVATLAVGYADG 302

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           +P ++S            G    + G  VPI+G I MD  M DIT    +  GD   + G
Sbjct: 303 FPRSVSN----------QGACVLLHGRRVPIIGNICMDQMMVDITGLDGVSEGDVATLIG 352

Query: 339 PD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D    + +D+++  + T N + L  I  R  + Y
Sbjct: 353 CDGDEVLSVDELSRLAHTINNETLCWISQRVPRIY 387


>gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
 gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
          Length = 825

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 181/373 (48%), Gaps = 30/373 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++D  A+ +N +   +L       A +VK  +YG G  ++A  L   GV    V   +E
Sbjct: 468 LEVDFDAMVHNLNYFRSLLPRKTMIAVMVKAFSYGSGAGEVASLLQYQGVNYLMVAFADE 527

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSC-GVS-H 122
           GV+LR     A I +  G+ +P  E    + + NL P I S+  L  + ++++  G+  +
Sbjct: 528 GVELR----AAGITIPIGVMNPEPEAFDHMIEFNLEPEIYSLELLEAFDRVLTKHGIEKY 583

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLER 181
           P  L+++TG NR GL  ++          K+   +  + SHLA +D+      ++ Q+ R
Sbjct: 584 PVHLKLNTGMNRSGLDPEDLPALLKFFETKRKVIIRSMFSHLAGSDEARHDEYTLFQINR 643

Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F  +    +      I   + +S+GI     Y F + R GI L+G +       P+  V 
Sbjct: 644 FIEMTKEVQARFDYPIIRHILNSAGIERFGQYAFDMVRLGIGLHGIS---AVGAPLWPVS 700

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +  I  +R+    + V YG +  L RD+ IAV  +GYAD       GLD   S  V  
Sbjct: 701 SFKTYIAAVRQVKGDQTVGYGRKGVLGRDTRIAVIPVGYAD-------GLDRHLSCGV-- 751

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
            G+ +I G  VPI+G I MD  M DITD+   +VGD ++IFG  I + +++   GT  Y+
Sbjct: 752 -GEVWIGGQRVPIVGNICMDACMVDITDT-DAQVGDEVEIFGKHISVTELSDKLGTIPYE 809

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 810 ILTSVSLRVKRIY 822


>gi|256846795|ref|ZP_05552250.1| alanine racemase [Fusobacterium sp. 3_1_36A2]
 gi|256717761|gb|EEU31319.1| alanine racemase [Fusobacterium sp. 3_1_36A2]
          Length = 356

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 177/371 (47%), Gaps = 34/371 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L   GV+ F V ++EE 
Sbjct: 5   IEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L+    + +I +L G     E I      + V ISS+ QL F   L+   ++    L+
Sbjct: 65  IELQEAGIKDKILIL-GASFEDELIEATKRGVHVAISSMGQLQF---LVDKNLNPNIHLK 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QLERFRT 184
            DTG  RLG  + EA        N  L  L  I SHL+ +D  +    +    Q+E+F+ 
Sbjct: 121 FDTGMTRLGFEVDEAEKVIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKFKK 179

Query: 185 LISHYK-GIE-ASLASSSGILLGPNYHF----QLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +++     +E   +++S+GI    N+H      L R GI +Y  T    K+  ++ + T 
Sbjct: 180 IVNSLNLNLEYIHISNSAGI---TNFHNDILGNLVRLGIGMYSFTGN-KKTSYLKNIFTI 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++R++ I+K      VSYG    L  DS  AV  IGYADG    LS            GG
Sbjct: 236 KSRVLFIKKVNKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLSK-----------GG 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
              I  +   I+G I MDMTM  I   +  SI++GD + +   +I LD++ +      ++
Sbjct: 285 YVLINNHRCEIIGNICMDMTMIRIPKEIENSIKIGDEVTVINANI-LDNLNIPELCV-WE 342

Query: 357 LLVRIGTRYAK 367
            +  IG R  +
Sbjct: 343 FMTGIGKRVKR 353


>gi|32491125|ref|NP_871379.1| hypothetical protein WGLp376 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31339945|sp|Q8D2H8|ALR_WIGBR RecName: Full=Alanine racemase
 gi|25166332|dbj|BAC24522.1| dadX [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 357

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 183/369 (49%), Gaps = 37/369 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD---FFVTSV 65
           ++I   AL +N  ++   +  ++  +V+K NAYG     I  AL   G+++   F V  +
Sbjct: 7   IRISSNALASNLRTIKNYANKSKVWSVIKSNAYG---HTIKAAL--KGLKETSGFAVLEL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHP- 123
            E V LR       I +L G     + + I    +  VI +  QL +  +     +  P 
Sbjct: 62  NEAVLLRENGWNGPILLLEGFFEESDLLEICQYKITTVIHNDWQLNYIKQY---DIKSPI 118

Query: 124 -YALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L++++G NRLG + ++ +   ++  N KK+  L+L+ SH +     S+   + Q+  
Sbjct: 119 DVYLKLNSGMNRLGFNEKDFIRTWYDLSNLKKISSLTLM-SHFSLGF--STKTVNKQMNI 175

Query: 182 FRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +   +K +  +L  A+S+ I+     H    RPGI LYG       KI+K   ++ V
Sbjct: 176 IRKI---FKILNPTLCLANSTAIIFHTYTHKDWIRPGIILYGILPKENKKISKKFNLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+RII I+   + E + YG      + +LI + + GYADGYP ++           F
Sbjct: 233 MTLESRIISIQNIKSKEYIGYGKNYYSNKSNLIGIVSCGYADGYPFSVP----------F 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   F+ G    I+G + MDM   D+ D  + ++G  ++++G +I +++++  + TT+Y
Sbjct: 283 SGTPVFVNGTRTQIIGSVCMDMLTIDLNDCPNAKIGSKVELWGNNISINEISKLANTTSY 342

Query: 356 DLLVRIGTR 364
           +L+ RI +R
Sbjct: 343 ELMCRISSR 351


>gi|293401062|ref|ZP_06645207.1| alanine racemase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306088|gb|EFE47332.1| alanine racemase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 382

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 176/385 (45%), Gaps = 37/385 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL+ + +N   +  L    ++  A+VK NAYG G    A  L   G+  F V+SV+E
Sbjct: 10  LEIDLSKISHNVKEIQKLLPSTSKIMAIVKANAYGHGDVACAKELSRCGIDFFGVSSVDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL- 126
           G+ LR    +  I +L    P     +   +LI    S   L +  K  +    H   + 
Sbjct: 70  GISLREGGIREPILILGYTPPVHFHQVIQHDLIQTFLS---LDYAKKANAWCKEHGVIMH 126

Query: 127 ---QVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSV 177
              +VDTG +RLG+  Q+    ++     ++     +  I SH + +D   + +      
Sbjct: 127 GHVKVDTGMSRLGIITQQQDYRIEEVKEVYHLPHIAVDGIFSHFSVSDGLDEDNKAYTRK 186

Query: 178 QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGT--DKINK-S 229
           Q+  F  ++   +  GI+     L +S GIL  P+  +   RPG+   G T  D I+  +
Sbjct: 187 QIMLFDQVLKDLEDAGIDVGIRHLQNSYGILNYPDLKYDYVRPGLLFLGATSDDAIDTIT 246

Query: 230 HP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           HP  Q ++  +A I +++    G  VSYG      R S IA  +IGYADGYP ++S    
Sbjct: 247 HPDFQPIMQLKANISMVKTIQPGVCVSYGRHFTSERISRIATVSIGYADGYPRSVSN--- 303

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                   G    + G  VPI+G I MD  M D+TD   ++ GD + +FG D    + +D
Sbjct: 304 -------KGACALLHGKRVPIIGNICMDQMMLDVTDIEHVKEGDVVTLFGCDGDEKLPID 356

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++   + T N +    +  R  + Y
Sbjct: 357 ELTRLAQTINNETFCWMSARLPRIY 381


>gi|260072540|gb|ACX30440.1| alanine racemase [uncultured SUP05 cluster bacterium]
          Length = 349

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 175/365 (47%), Gaps = 36/365 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I  +AL +N   +      ++  ++VK +AYG     + P +  + +    V+ + E  K
Sbjct: 7   ISQSALAHNLSVVRQSCSESKIVSMVKADAYGHHLTLVDPIIDESDL--LAVSELSEAQK 64

Query: 71  LRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           LR  T +  I +L G++   E    +  D ++  V+    Q+   ++     GV     +
Sbjct: 65  LREKTDKP-ILLLSGVYSQDELQSALALDCHV--VVHEKEQINLIAQTKERIGV----WI 117

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG +RLGL   E  +      N  L  +  ++SH ACAD+     N  QL  F  L 
Sbjct: 118 KIDTGMHRLGLLANEYHECIEAFKNNTLVDVECVMSHFACADEIDHPTNESQLNEFNQLT 177

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
                I+ S+A+S+ IL   +  F   RPGI LYG    GTD+ +    ++ V+   A I
Sbjct: 178 D--DSIKRSMANSAAILSNKDALFDFVRPGIMLYGISPFGTDESD----LKPVMELSAPI 231

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + I+    GE V YG      + + IA+  IGY DGYP         H+ +   G    I
Sbjct: 232 LSIKTIQTGESVGYGATWTANKKTNIAIIGIGYGDGYP--------RHAKN---GTPVCI 280

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRI 361
            G + P++G+++MD+   +I DS++ +VGD   ++G + +  + VA  S T  Y+L+  +
Sbjct: 281 NGKLCPLIGRVSMDLICVNI-DSITAKVGDIATLWGNEKLSAETVATWSDTIGYELVTGV 339

Query: 362 GTRYA 366
            +R +
Sbjct: 340 SSRVS 344


>gi|328952024|ref|YP_004369358.1| Alanine racemase [Desulfobacca acetoxidans DSM 11109]
 gi|328452348|gb|AEB08177.1| Alanine racemase [Desulfobacca acetoxidans DSM 11109]
          Length = 399

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 174/389 (44%), Gaps = 44/389 (11%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N  + L +DL AL+ N+  +    G   +  AV+K +AYG G   +A  L  AG   F V
Sbjct: 29  NRMVELTVDLAALQYNFRQLRQYCGQKVKILAVIKADAYGHGLLPVAQVLAPAGADYFGV 88

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
               EGV LR       I +L G+ P +  E +  D           ++T + + M+  +
Sbjct: 89  AYCSEGVSLRQAGITLPILLLMGVLPEEAAEAVAHDL----------EVTLFCREMAAAL 138

Query: 121 SHPYA---------LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
           +             +++DTG  RLGL   E + F  +       +L+ +ISH A +D   
Sbjct: 139 AAQARQQSKKVKVHVKIDTGMGRLGLLPTELMPFLESLGEFPELELAGLISHFAASDCCD 198

Query: 172 SHVNSVQLERFRTLISHYKG----IEAS-LASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
                 QL  F  L+   +G    + AS +A+S+ +L     H  + R GI+LYG    +
Sbjct: 199 RSYTHQQLADFERLLKGVRGRGWAVPASHIANSAAVLHVHQAHLNMVRAGITLYGSPPSL 258

Query: 227 NKSH--PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
                 P++ V++   R++ +++   G  +SYG      + SLIA   +GY +GY   +S
Sbjct: 259 ETPSPIPLKPVMSLRTRVLQLQELPPGCSISYGRTYFTDKPSLIAALPVGYCNGYSRLMS 318

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                        G   + G   PI G++ M++TM D+T+   ++ GD   + G D    
Sbjct: 319 NR-----------GCVLLHGQRAPIRGRVCMNLTMVDVTEIPGVKKGDMATLLGEDGSDR 367

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  DD+A  + T +Y++   +G    + Y
Sbjct: 368 LTGDDLAAWAETISYEIYCMMGNSNYRRY 396


>gi|268589444|ref|ZP_06123665.1| alanine racemase [Providencia rettgeri DSM 1131]
 gi|291315109|gb|EFE55562.1| alanine racemase [Providencia rettgeri DSM 1131]
          Length = 359

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 178/371 (47%), Gaps = 37/371 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA---GVQDFFVTSVEE 67
           I L  L++N   +    GN++  +V+K + YG G ++I PAL      GV DF     +E
Sbjct: 9   IHLQNLQHNLAIVRQHVGNSKIWSVMKADGYGHGIKQIWPALKETDGFGVLDF-----DE 63

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            + LR    +  I +L G   P   ++I   NL   + S  QL     + +  +S P + 
Sbjct: 64  AILLRKEGWKGPILLLEGFFQPQDLQLIDQYNLTTSVHSEWQLF---AIENAQLSSPISV 120

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQ-LERF 182
            +++++G NRLG S  E         +K L   SL ++SH A +D  +      Q +++F
Sbjct: 121 YIKLNSGMNRLGFSPSEYESVVQR-LSKMLNVRSLTLMSHFANSDTKTGVTEPFQQIQQF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTA 238
             L      +E  +A+S   L   +  +   R GI LYG +     +      ++  +T 
Sbjct: 180 EHL-----SLETCIANSGATLWHKHTQYDWIRTGILLYGASPSGKSTDISGLGLKAAMTL 234

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +I I +  AG+ + YG +   T+   IA  A GYADGYP   +      +P      
Sbjct: 235 QSEVIAIHEIPAGQSIGYGSRFTSTKPMRIATVACGYADGYPRHAA----NRTPV----- 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             + KG    +LG ++MDM   DI+D   +++G+ ++++G ++ +D+VA A+GT  Y+LL
Sbjct: 286 --WCKGKRCALLGAVSMDMLTIDISDCGDVKLGERVELWGQNLPVDEVAQAAGTIGYELL 343

Query: 359 VRIGTRYAKFY 369
             +  R    Y
Sbjct: 344 CALAKRVPVSY 354


>gi|319785910|ref|YP_004145385.1| alanine racemase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464422|gb|ADV26154.1| alanine racemase [Pseudoxanthomonas suwonensis 11-1]
          Length = 356

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 173/362 (47%), Gaps = 27/362 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+    +L G  R  AVVK +AYG G  + A AL +     F V  +EE
Sbjct: 5   RALIDLAALRHNYRLARSLGGG-RALAVVKADAYGHGAVRCAAALEHEA-DGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            + LR    +  I +L G     E  ++ + +L  V+ +  Q+    + +   +  P   
Sbjct: 63  ALVLRGAGIRKPILLLEGFFEASELPLLLEHDLWTVVHAPWQVEALERTV---LPAPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++D+G +R+G+   +  +           ++++ +SH A AD+        QL+ F  
Sbjct: 120 WLKLDSGMHRVGIGADDYAEAWRRLEALPHVRMAVKMSHFARADELECARTREQLDTFAA 179

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240
             +   G E S+ +S  +L  P       RPG+ LYG      ++H     ++ V+T E+
Sbjct: 180 ATAGLPG-EVSVCNSPALLGWPQARGHWARPGLMLYG-VSPFAQAHDLAAQLRPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP-LTLSGLDSEHSPSVFLGGK 299
           ++I +R+  AGE V YG +      + + V A+GYADGYP   ++G     +P    G  
Sbjct: 238 KVIAVRELPAGEPVGYGARFVTEAPTRVGVVAMGYADGYPQFAVNG-----TPVAIDGRP 292

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           G        ++G+++MDM   D+TD     VG  ++++G  +    V   S T++Y LL 
Sbjct: 293 GR-------LVGRVSMDMLTIDLTDHPQAGVGSTVELWGNQVSAAQVVANSQTSSYRLLC 345

Query: 360 RI 361
            +
Sbjct: 346 AV 347


>gi|227832290|ref|YP_002833997.1| Alanine racemase [Corynebacterium aurimucosum ATCC 700975]
 gi|227453306|gb|ACP32059.1| Alanine racemase [Corynebacterium aurimucosum ATCC 700975]
          Length = 365

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 39/380 (10%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+  +DL A+ +N   +      AR   VVK +AY  G E+ AP +  AG   F V ++
Sbjct: 1   MLKTTVDLNAIAHNVARVKEAVAPARLMCVVKADAYAHGIERCAPVMAQAGADAFGVATL 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-----VPQLTFYSKLMSCGV 120
            E V LR       I   +   P +       +L P +++     +P L     L++   
Sbjct: 61  AEAVALRKVIDNLPI-AAWLWEPTE-------DLAPALAADIQIGIPSLAHAQALIAAET 112

Query: 121 SHPYALQVDTGFNRLGLS---LQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNS 176
                + V+TG +R G+     +E      ++ +   LG    ++SH ACAD+P    N 
Sbjct: 113 PTEAFVMVETGMHRSGVDKHVWEETFRLLADAPHITVLG----LMSHFACADEPEHPHND 168

Query: 177 VQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q   FR  ++  +  G+E  L   A+S   L  P+  F+  R G++LYG        H 
Sbjct: 169 HQESEFRQALALAREVGLECPLNHLANSPAALTRPSARFEQVRVGLALYGLEPVAGLDHG 228

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T EA ++ ++   AGE   YG       +  +A  ++GYADG P    G      
Sbjct: 229 LEPAMTWEASVVAVKPISAGESTCYGLTWTAESERELATVSVGYADGLPRAFQG------ 282

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP-DIKLDDVALA 349
            ++ +G    I G + P +G++ MD  + D+ ++   +  GD   IFG   +    +A A
Sbjct: 283 -ALQVG----IGGELYPQVGRVCMDQIVVDLGSNPHGVRAGDTAVIFGRGGMSATGLAEA 337

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +GT NY+++ R   R  + Y
Sbjct: 338 AGTINYEVVCRPTGRTERTY 357


>gi|326777201|ref|ZP_08236466.1| Alanine racemase [Streptomyces cf. griseus XylebKG-1]
 gi|326657534|gb|EGE42380.1| Alanine racemase [Streptomyces cf. griseus XylebKG-1]
          Length = 408

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 171/379 (45%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   +   +  A+  AVVK + YG G    A A   AG       + +E
Sbjct: 26  RAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAAREAGATWLGTATPQE 85

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR      RI        G  +   + ++   +  +  L    +     G +    L
Sbjct: 86  ALALRAAGLDGRIMCWLWTPGGPWREAIEADIDVSVGGMWALREVVAAAAEAGRTARIQL 145

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +  +    +   ++ G++ +  + SH ACAD+P     + QL  +R
Sbjct: 146 KADTGLGRGGCQPADWPELVGEALAAERAGRVEVTGLWSHFACADEPGHPSIAAQLAVYR 205

Query: 184 TLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQT 234
            L+++ +  G+E     LA+S   L  P  HF L R GI++YG +       +    ++ 
Sbjct: 206 DLVAYAEKEGVEPEVRHLANSPATLTIPEAHFDLVRTGIAMYGVSPAPELGTSADLGLRP 265

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A + L++ A AG  +SYG     T  + + +  +GYADG P   SG     +  V
Sbjct: 266 VMTLAASVALVKDAPAGHGISYGHHYTTTAGTTLGLIPVGYADGVPRHASG-----TGPV 320

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
            +GGK      +  + G++ MD  + D+ D    E G    +FGP    +    D A A+
Sbjct: 321 LVGGK------VRRVAGRVAMDQFVVDL-DGDRPEAGAEAVLFGPGDRGEPTAQDWAEAA 373

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT  Y+++ RIGTR  + Y
Sbjct: 374 GTIAYEIVTRIGTRVPRVY 392


>gi|262183853|ref|ZP_06043274.1| alanine racemase [Corynebacterium aurimucosum ATCC 700975]
          Length = 367

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 39/380 (10%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+  +DL A+ +N   +      AR   VVK +AY  G E+ AP +  AG   F V ++
Sbjct: 3   MLKTTVDLNAIAHNVARVKEAVAPARLMCVVKADAYAHGIERCAPVMAQAGADAFGVATL 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-----VPQLTFYSKLMSCGV 120
            E V LR       I   +   P +       +L P +++     +P L     L++   
Sbjct: 63  AEAVALRKVIDNLPI-AAWLWEPTE-------DLAPALAADIQIGIPSLAHAQALIAAET 114

Query: 121 SHPYALQVDTGFNRLGLS---LQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNS 176
                + V+TG +R G+     +E      ++ +   LG    ++SH ACAD+P    N 
Sbjct: 115 PTEAFVMVETGMHRSGVDKHVWEETFRLLADAPHITVLG----LMSHFACADEPEHPHND 170

Query: 177 VQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q   FR  ++  +  G+E  L   A+S   L  P+  F+  R G++LYG        H 
Sbjct: 171 HQESEFRQALALAREVGLECPLNHLANSPAALTRPSARFEQVRVGLALYGLEPVAGLDHG 230

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T EA ++ ++   AGE   YG       +  +A  ++GYADG P    G      
Sbjct: 231 LEPAMTWEASVVAVKPISAGESTCYGLTWTAESERELATVSVGYADGLPRAFQG------ 284

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP-DIKLDDVALA 349
            ++ +G    I G + P +G++ MD  + D+ ++   +  GD   IFG   +    +A A
Sbjct: 285 -ALQVG----IGGELYPQVGRVCMDQIVVDLGSNPHGVRAGDTAVIFGRGGMSATGLAEA 339

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +GT NY+++ R   R  + Y
Sbjct: 340 AGTINYEVVCRPTGRTERTY 359


>gi|323706388|ref|ZP_08117952.1| alanine racemase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534282|gb|EGB24069.1| alanine racemase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 388

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 175/383 (45%), Gaps = 43/383 (11%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L  + +N+  +  ++  NA   AVVK NAYG G  +++  L N GV    V +++E 
Sbjct: 11  EVNLDNIIHNYKEIRKITDKNAGIMAVVKANAYGHGSYEVSKELINCGVDYLAVATIDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQ----------EKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           ++LR       I +L G  P +           +  F+ + +  ++ V Q          
Sbjct: 71  LELREQGISKPILIL-GYTPAKFADVIVKHDITQTAFELSYVKEVAKVAQ--------KL 121

Query: 119 GVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      +++DTG  R+G + + +A +      N     +  I SH + +D+        
Sbjct: 122 GKDAKIHVKIDTGMGRIGYNDMNKAYEEILTMSNLAGINIEGIFSHFSSSDEKDKEYTLR 181

Query: 178 QLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSH 230
           QLE F  LI   K  G+      +A+S+ IL  P  H  + RPGI LYG   + ++NK  
Sbjct: 182 QLEIFLNLIERLKKSGLYIPIRHIANSAAILDMPETHLDMVRPGIILYGSFPSSEVNKKI 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +   ++  ++++ ++    GE +SY    +  R S IA   IGYADG    LS     +
Sbjct: 242 DLLPTISLRSKVVYVKDVGEGEYISYNRTYRTNRKSRIATLPIGYADGLNRLLS-----N 296

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
           + +V + GK        PI+GKI MD  M D+T+   ++ GD   I G      I  D++
Sbjct: 297 NHNVIINGK------YAPIVGKICMDQCMVDVTEIEDVKEGDVATIMGEADGKFISADEI 350

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T +Y++   I  R  + Y
Sbjct: 351 ANKLKTISYEVYCGISRRVPRIY 373


>gi|154249706|ref|YP_001410531.1| alanine racemase [Fervidobacterium nodosum Rt17-B1]
 gi|154153642|gb|ABS60874.1| alanine racemase [Fervidobacterium nodosum Rt17-B1]
          Length = 364

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 162/351 (46%), Gaps = 31/351 (8%)

Query: 30  ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89
           A+   VVK NAYG G  ++A A    G+  F V  +EE ++LR +     I V   I P 
Sbjct: 29  AKVMPVVKANAYGHGAVQLAKAAQKIGIDYFAVAFLEEAIELRKHGISKDILVFNYIEPD 88

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS 149
              I  + N+   + S  QL  Y+K +    +H   +++DTG  RLG+  +EA DF  ++
Sbjct: 89  LLHIAMENNITITLYSWEQLWKYTKYVWRPKAH---IKIDTGMRRLGVYPEEAKDFIESA 145

Query: 150 FNKKLGQLSLIISHLACA---DDPSSHVNSVQLERFR--TLISHYKGIEASLASSSGILL 204
            N    ++    +H A A   DD        Q+E+F    L    K +  S AS S I+ 
Sbjct: 146 RNVGF-EVEGAYTHFAVADSLDDEDVKFTQQQVEKFANLNLDVKIKHLCNSGASVSKIVN 204

Query: 205 GPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262
                F   R GI+ YG   +D +  S  ++ V++ +  +  ++    G+ VSYG   K 
Sbjct: 205 C----FDYVRVGIASYGLQPSDSVY-SEQLKPVLSWKTTVSHVKTIQPGDSVSYGRTFKA 259

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
             +  IA   +GYADGY   LS             G   I G   PI+G++ MD  M D+
Sbjct: 260 FTEMRIATIPVGYADGYWRHLSN-----------KGYVLIHGEKCPIIGRVCMDQFMVDV 308

Query: 323 TDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           T    +++GD + + G      I  +++A   GT NY++  RI  R  + Y
Sbjct: 309 THLEDVKIGDEVILIGKQGDNIITAEEIAKLVGTINYEVTCRISERVPRKY 359


>gi|186476117|ref|YP_001857587.1| alanine racemase [Burkholderia phymatum STM815]
 gi|184192576|gb|ACC70541.1| alanine racemase [Burkholderia phymatum STM815]
          Length = 363

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 156/339 (46%), Gaps = 28/339 (8%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AVVK NAYG G  +  P L       F +  +EE VKLR       I +L G   P    
Sbjct: 39  AVVKANAYGHGLARAFPGLR--ATDGFGLLDLEEAVKLRELGWAGPILLLEGFFRPTDID 96

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTGFNRLGLSLQE-ALDFTHNS 149
           +I   +L   + S  QL     L    +S P  +Q  +++G NRLG + ++    +    
Sbjct: 97  VIDRYSLTTALHSDEQLRM---LEMARLSKPVNIQLKMNSGMNRLGYTPEKFRAAWERAR 153

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
             + +GQ++L+ +H + AD  S    S Q+E F        G   SLA+S+  L  P  H
Sbjct: 154 ACQGVGQITLM-THFSDAD--SERGISHQMEAFERGAQGIAGAR-SLANSAATLWYPEAH 209

Query: 210 FQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
           F   RPG+ LYG    G     K   +Q  +T  + +I ++    G+ + YG        
Sbjct: 210 FDWVRPGVMLYGASPSGVSSAIKDTGLQPAMTLASELIAVQTLAQGQTIGYGSTFTAREG 269

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
             I V A GYADGYP     +  E +P +       + G    I+G+++MDM   D+T  
Sbjct: 270 MRIGVVACGYADGYPR----VAPEGTPII-------VDGIRTRIVGRVSMDMITVDLTPC 318

Query: 326 LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
               VG  ++++G  + +DDVA + GT  Y+L+  +  R
Sbjct: 319 PQANVGSRVELWGAQLPVDDVAQSCGTIGYELVCAVAPR 357


>gi|172060986|ref|YP_001808638.1| alanine racemase [Burkholderia ambifaria MC40-6]
 gi|171993503|gb|ACB64422.1| alanine racemase [Burkholderia ambifaria MC40-6]
          Length = 356

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 166/362 (45%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++   VVK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYAPEKYRAAWERARACPGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
            +  G   SLA+S+ +L  P+ HF   RPGI LYG    G         ++  +T  + +
Sbjct: 181 ENIAGAR-SLANSAAVLWHPDTHFDWVRPGIMLYGASPSGLSADIADTGLKPAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 GR 350


>gi|307546199|ref|YP_003898678.1| alanine racemase [Halomonas elongata DSM 2581]
 gi|307218223|emb|CBV43493.1| alanine racemase [Halomonas elongata DSM 2581]
          Length = 366

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 114/379 (30%), Positives = 174/379 (45%), Gaps = 36/379 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LR  IDL AL +N+     L+  +R+ AV+K +AYG G    A AL       F V  +E
Sbjct: 5   LRADIDLDALCHNYRLARDLAPTSRSLAVLKADAYGHGLVPCARALEGLAPA-FAVACLE 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   LR     A I +L GI    E    +   L  V+ S  Q+     L+S   + P  
Sbjct: 64  EAEALREGGITAPIVLLEGIFSADELARVEALKLGTVVHSDWQV---EALLSHRPAEPIP 120

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLE-R 181
             ++VD+G +RLG + + A                L ++SH A AD    H ++   E +
Sbjct: 121 TWVKVDSGMHRLGFAPERAASVWARLSAAPAQACDLHLMSHFATAD----HADTAYFEHQ 176

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTV 235
            RTL +  + + A   LA+S   L  P  H    RPG+ LYG +D +  S+     ++ V
Sbjct: 177 MRTLNALAETLNAPTCLANSPATLARPESHGAWNRPGVMLYG-SDPLEASNSASRELEPV 235

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  +++I +R    GE V YGG+ +  R S I V A GY DGY          H+    
Sbjct: 236 MTLRSQLIAVRDLDEGEPVGYGGRWRAPRPSRIGVVACGYGDGY--------DRHA---I 284

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALAS 350
            G    + G    ++GK++MDM   D+TD    ++G  + ++G       + +D+VA   
Sbjct: 285 DGTPALVAGRRTTLVGKVSMDMLTVDLTDIPEADIGSEVVLWGRAANGEVLSVDEVARHC 344

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y LL  +  R  + Y
Sbjct: 345 DTISYTLLTGVLPRVPRRY 363


>gi|255038732|ref|YP_003089353.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Dyadobacter fermentans DSM
           18053]
 gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053]
          Length = 824

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 177/375 (47%), Gaps = 29/375 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +   A +G   +  A+VK  AYG G  ++A  L    V    V   +E
Sbjct: 462 LEINLDALVHNLNYYRARAGQGTKIMAMVKAFAYGSGSSEVAALLQYHRVDYLGVAYTDE 521

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---VSHPY 124
           GV LR       I V+    P  + +++   L P I S   LT + + ++      + P 
Sbjct: 522 GVMLRQSGITLPIMVMNATLPTFD-LLWQYKLEPEIYSRRILTDWIEYITRKGEPTNTPS 580

Query: 125 A-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +RLG    +              +++ + SHL  AD+     N    +++ 
Sbjct: 581 VHLKLDTGMHRLGFVKDDYEWLVEQLRQNPALKVATLFSHLVGADEGVH--NEFSRKQYA 638

Query: 184 TLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
             +   + IEA+L         +S+GI+  P Y   + R GI LYG          +Q+V
Sbjct: 639 QFMEGAELIEATLGYKTIKHILNSAGIVRFPEYRLDMVRLGIGLYGVEATGQDQRALQSV 698

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-SGLDSEHSPSV 294
            T +  +  ++   +GE V Y  +  +  DS IA  AIGYADGY   L +G+        
Sbjct: 699 GTLKTIVSQVKYLSSGETVGYSRKGVVDHDSAIATLAIGYADGYDRGLGNGV-------- 750

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              GK ++ G + P +G I MDMTM D+T++  +E GD + +FG ++ + ++A    T  
Sbjct: 751 ---GKVWVNGTLCPTIGNICMDMTMIDVTNA-QVEEGDEVIVFGKEVPITELAKTINTIP 806

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  IG R  + +
Sbjct: 807 YEILTGIGDRVKRVF 821


>gi|189501096|ref|YP_001960566.1| alanine racemase [Chlorobium phaeobacteroides BS1]
 gi|189496537|gb|ACE05085.1| alanine racemase [Chlorobium phaeobacteroides BS1]
          Length = 371

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 166/372 (44%), Gaps = 25/372 (6%)

Query: 11  IDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I  + L++N+  +++ + G+ R  AVVK NAYG      +  L   GV+DF V ++ E  
Sbjct: 11  ISSSNLEHNYRLTLDRIPGHCRIMAVVKANAYGHDAAGTSKILERLGVRDFGVANIAEAA 70

Query: 70  KLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
            LR     +  + I       P       + ++   I     L     + S   V     
Sbjct: 71  SLRKQLTVSGHSEILAFSSPLPDHIARYLEHDIAATICDFNMLRAAESIASAHNVPLKVH 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG  RLG + + A      +      +LS I +H A +    +     Q + F  +
Sbjct: 131 VKIDTGMGRLGTTPENAFQLLEAAEKSPHLRLSGIYTHFAQSTSRDAFTGR-QRDLFTQI 189

Query: 186 ISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
            S +     +      A+S GIL   N  F + RPGI LYG    D +     ++ V+  
Sbjct: 190 CSEFEHRMQRTFCKHAANSGGILCHDNAFFDMVRPGIMLYGYFPDDSVKGRADLKPVMLL 249

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             +++ I++  AG  +SY           IA  + GYADGYP TLS     +  +V + G
Sbjct: 250 STKVMFIKEVEAGTTISYNRTWTAPSRRRIATLSAGYADGYPRTLS-----NRTTVSIRG 304

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDL 357
           K F      P +G ITMD  M D+ +   + VGD   +FG + I   D+AL +GT +Y+L
Sbjct: 305 KTF------PQVGTITMDQFMVDLGNDRDVRVGDDALLFGGEGISAADLALTAGTISYEL 358

Query: 358 LVRIGTRYAKFY 369
           L  + +R  + +
Sbjct: 359 LCAVSSRVRRVF 370


>gi|302379690|ref|ZP_07268175.1| alanine racemase [Finegoldia magna ACS-171-V-Col3]
 gi|302312597|gb|EFK94593.1| alanine racemase [Finegoldia magna ACS-171-V-Col3]
          Length = 391

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 180/394 (45%), Gaps = 58/394 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LK+DL  LK+N+  +  +S   +  AVVK NAYG G   I   L   G+  F V+++ E 
Sbjct: 8   LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67

Query: 69  VKLR---LYTPQARIFVL---------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           ++LR   ++ P   I +L           I    E  ++D +    I++V +    S   
Sbjct: 68  LELRKNGIFKP---IMILGYISNENIEVAIKNNIELTVYDYDTAVEINNVAK----SLNK 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSL--IISHLACADDPSS 172
            C V     +++DTG  RLG  ++   D       K  K+  + L  I SH + AD   S
Sbjct: 121 ICKVH----IKIDTGMTRLGFQVRLDHDKCLEEIFKIYKMDNVVLQGIYSHFSDAD---S 173

Query: 173 HVNSVQLERFRTLISHYKGIE--------ASLASSSGILLGPNYHFQLTRPGISLYG--G 222
              S   E++ T I     +E          +A+ +G ++   Y   + R GI LYG   
Sbjct: 174 EDYSYTKEQYNTYIGFMIDVENRGITVPIKHIANDAGAII-HGYFLDMIRCGIGLYGYHA 232

Query: 223 TDKI--NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           +D +  N    ++ + +    + +I+    G  + YG       ++++A A IGYADGYP
Sbjct: 233 SDYVTENSRLNLEEISSLYTTVSMIKTVPKGTDIGYGRTFTTNSETIVATATIGYADGYP 292

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
           L LS     +   V + GK         ILGK+ MD  M D+T    ++VGD + +FG D
Sbjct: 293 LELS-----NKAYVIINGKK------AKILGKVCMDQIMIDVTYIRDVKVGDKVLLFGKD 341

Query: 341 ----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
               I L D+A  + T  Y+LL R+  R  + YT
Sbjct: 342 DMGEISLYDLAEMANTNVYELLCRVTMRIPRIYT 375


>gi|157370985|ref|YP_001478974.1| alanine racemase [Serratia proteamaculans 568]
 gi|157322749|gb|ABV41846.1| alanine racemase [Serratia proteamaculans 568]
          Length = 357

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 170/366 (46%), Gaps = 36/366 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L A +NN   +   +  A+  +VVK NAYG G + +  +L  A    F +  + E + 
Sbjct: 9   LHLGAFENNLQVVRRFAPKAKVWSVVKANAYGHGIKHVWRSL--AQTDGFALLDLAEAIL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR    Q  I +L G    Q+  + D   L   + S  QL   + +    +S P    L+
Sbjct: 67  LRESGWQGPILLLEGFFKPQDLALLDRYRLTTSVHSDWQL---AAIAEAKLSAPLDVYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK--KLGQLS--LIISHLACADDPSS-HVNSVQLERF 182
           V++G NRLG     A +  H  + K  ++G ++   ++SH A AD P         +ER 
Sbjct: 124 VNSGMNRLGF----APERLHAVWMKAQEIGNIASLTLMSHFATADGPQGVEAQMASIERA 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTA 238
              I+    +   LA+S+  L  P  H    RPGI LYG    G  +      +Q  +T 
Sbjct: 180 AKGIT----LPRCLANSAATLWHPQTHGSWVRPGIVLYGASPSGQWRDIADSGLQPTMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   +G+ V YG + +      I V A GYADGYP         H+ +   G 
Sbjct: 236 SSEIIGVQTLKSGDQVGYGWRYRAEGAQRIGVVACGYADGYP--------RHAQT---GT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G +   LG ++MDM + D+T      +G  ++++G  + +DDVA A+GT  Y+LL
Sbjct: 285 PVWVDGVLTRTLGTVSMDMLVVDLTPCPHAGIGAEVELWGRRLPVDDVATAAGTLGYELL 344

Query: 359 VRIGTR 364
             +  R
Sbjct: 345 TALAAR 350


>gi|296113256|ref|YP_003627194.1| alanine racemase Alr [Moraxella catarrhalis RH4]
 gi|295920950|gb|ADG61301.1| alanine racemase Alr [Moraxella catarrhalis RH4]
          Length = 380

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 167/353 (47%), Gaps = 26/353 (7%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR-----LYTPQARI 80
           L    +  A+VK +AYG G +   PAL +A    F V  + E + ++     +   +  +
Sbjct: 24  LDRTTKVLAMVKADAYGHGIDATIPALIHA--DGFGVACLSEAMAVKQVLDGMNVKKPIV 81

Query: 81  FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQVDTGFNRLGLS 138
            +       + K+  D +   +I    QLT+    +       H   L+ +TG +RLG +
Sbjct: 82  LIEGAFSLDEWKVAIDHDFGCLIHHENQLTWALSHRPKQDQFCHTIWLKYNTGMSRLGFN 141

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----A 194
               +  T        G   ++ SH ACADD S  +N+ Q+ +F   ++  +       A
Sbjct: 142 DDHII--TAAKSLADAGYRLILTSHFACADDKSHPLNAQQISKFDQALACIRSFAPDTLA 199

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAEARIILIRKALAG 251
           SL +S+GI    + H    R GI+LYG    TD+  K+  +   +T  A+++ I    AG
Sbjct: 200 SLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQSAKALNLMPAMTLSAQVMAIHTLAAG 259

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
           + + Y       +   IAV +IGY DGYP  + G  ++ S +   G +     ++  I+G
Sbjct: 260 DSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG--AKVSVTDTSGNR-----HLCDIIG 312

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           ++ MDM M DI D L I +   + ++G    +D+VA+ +GT  Y+L+ R+ TR
Sbjct: 313 RVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDEVAMCAGTIGYELMCRLTTR 364


>gi|297564288|ref|YP_003683261.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848737|gb|ADH70755.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 402

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 179/383 (46%), Gaps = 48/383 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D++A+ +N   M A   N+   AVVK N +G G  ++A A   AG     VTS+EE + 
Sbjct: 26  VDISAIAHNVRFM-AKRTNSEILAVVKANGFGHGAVEVARASLEAGATWLGVTSLEEALA 84

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGV-----SHPY 124
           LR      R  VL  +H   +   FD+ +   +  SVP +     +    V     +H +
Sbjct: 85  LRRAG--LRAPVLCWLHRADQD--FDSAVAADVDLSVPSVGHLRAVADAAVRTGRVAHVH 140

Query: 125 ALQVDTGFNRLG---------LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            L+ DTG +R G         + L   L+         L ++  + SHLA AD P +   
Sbjct: 141 -LKADTGLSRNGAPPDAWPGLVGLARVLEL------DGLVRVRGVWSHLASADLPGAATT 193

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           + Q+  F   +S  +  G++ SL   A+++ IL  P  HF L R G+ LYG      +  
Sbjct: 194 AQQVTAFEGALSQARAAGLDPSLRHLANTAAILNEPATHFDLVRAGVGLYGVEPVEGRRF 253

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +T  AR+ ++R+  AG  VSY       R+SL+A+  +GYADG P      D  +
Sbjct: 254 GLRLAMTLRARVAMVRRVPAGTGVSYHHAYTTPRESLLALVPLGYADGVPRAAG--DRAY 311

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                     +I G   P+ G+I MD  + D+   + +  GD + +FGP    +  +++ 
Sbjct: 312 V---------WIAGRRCPVAGRIAMDQFVVDV-GGMDVREGDEVVVFGPGDRGEPTVEEW 361

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +GT  +++L  +G R  + +
Sbjct: 362 ADWAGTIPHEILTGVGARVPRLH 384


>gi|332978217|gb|EGK14948.1| alanine racemase [Psychrobacter sp. 1501(2011)]
          Length = 392

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 169/378 (44%), Gaps = 48/378 (12%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +NA+    +  A+VK +AYG G +   P+L  A      V    E  ++R    Q  + +
Sbjct: 21  INAIPEKTKVLAMVKADAYGHGVKYCLPSLQKA--DGLGVACFTEAKQIRDLGWQKVLVL 78

Query: 83  LYGIHPGQE----------KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGF 132
           + G+   QE           II   N +       Q        S        L+++TG 
Sbjct: 79  IEGVFSQQEWAESIEAECQSIIHHQNQV-------QWALQQVPASNSPCRTIWLKLNTGM 131

Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK-- 190
           NRLG   +E +       +   G   ++ SH A AD P    N+ Q++ F   +   +  
Sbjct: 132 NRLGFEPEELVSVAQTLVDA--GYNLILTSHFANADRPEHPSNTNQIKMFTESLQDLREK 189

Query: 191 ---GIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKIN-KSHPMQTVVTAEARIIL 244
               I+ASL +S+GI+  P  HF   RPGI LYG T  D I+ +S  ++ V++  A ++ 
Sbjct: 190 VDPNIKASLCNSAGIINFPECHFDWVRPGIMLYGSTPLDGISAQSLQLKPVMSFSASLMA 249

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG--------------LDSEH 290
           I    AG  V YG +    R  +  + +IGY DGYP  + G               D + 
Sbjct: 250 IHNIAAGAHVGYGSRFVANRPIVKGIVSIGYGDGYPRVVDGSAWVSVQLAAHENETDIDR 309

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PD---IKLDDV 346
           S    +G    ++ Y  P++G++ MDM   D+T+  +  VG  + ++G PD     +DD+
Sbjct: 310 STENDIGST-TVRRYKCPVIGRVAMDMIAIDLTEVPNPTVGCQVTLWGDPDEAAPSVDDI 368

Query: 347 ALASGTTNYDLLVRIGTR 364
           A ++ T  Y+LL R+  R
Sbjct: 369 ANSAHTLGYELLCRVTQR 386


>gi|167757231|ref|ZP_02429358.1| hypothetical protein CLORAM_02781 [Clostridium ramosum DSM 1402]
 gi|167703406|gb|EDS17985.1| hypothetical protein CLORAM_02781 [Clostridium ramosum DSM 1402]
          Length = 341

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 162/353 (45%), Gaps = 33/353 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
            VVK   YG G  ++A      G++ F V +++EG+KLR +     I VL   HP +   
Sbjct: 2   VVVKAEGYGHGLVEVAKHCQKMGIEAFAVATIDEGIKLREHGIYGEILVLGYSHPIRAIE 61

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
           + +  LI  I +        +L   G      +++DTG +RLG  L +  +     ++ +
Sbjct: 62  LHNYRLIQTIVNREHA---RQLNESGHMINVHIKIDTGMHRLGFDLSD-YESIKEIYDYQ 117

Query: 154 LGQLSLIISHLACADDPSSHVNSV----QLERFRTLIS-----HYKGIEASLASSSGILL 204
              +    +HL C  D    V+      Q+  F  LI+     HY   +  L SS G++ 
Sbjct: 118 FIHIQGYFTHL-CVCDSKRKVDQEYTQKQIAAFYDLINELKLRHYDIGKVHLQSSYGLVN 176

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQK 260
            P  +    R GI +YG     N    +Q      +T +A+I ++     G  + YG   
Sbjct: 177 YPEINADYARVGILMYGVYSTFNDYSKVQLDLKPALTIKAQIAMLHYLTKGASLGYGLTY 236

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
           K+ RDS+IAV  IGY DG P  LS             G   IKG   PI+G+I MD  + 
Sbjct: 237 KVNRDSVIAVIPIGYGDGLPRILSS-----------NGSVLIKGQKCPIVGRICMDQMLV 285

Query: 321 DITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D+++   I   D + + G D    I+++++AL + T + ++L R+G+R  + Y
Sbjct: 286 DVSEISDISDNDLVTVIGQDGTEEIRVEEIALEANTISNEILSRLGSRLPRIY 338


>gi|257453404|ref|ZP_05618699.1| alanine racemase [Enhydrobacter aerosaccus SK60]
 gi|257449156|gb|EEV24104.1| alanine racemase [Enhydrobacter aerosaccus SK60]
          Length = 361

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 167/375 (44%), Gaps = 35/375 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + IDL AL +N   +   +  A+  A+VK NAYG G     PA+  A      V  ++E 
Sbjct: 6   ITIDLAALTHNLQRVKDYAPTAKVLAMVKANAYGHGAVNCLPAVAQADA--LGVACLQEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP----- 123
           ++L+    Q  + V+ G     E      + I  +        + + +   +  P     
Sbjct: 64  LELQQAGWQKLMVVIEGAFSLAEWQYCTAHQIECV------VHHQRQLDWALQQPAKKGA 117

Query: 124 -YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+++TG NRLG ++ E  +      +   G   ++ +H A AD      N  Q E F
Sbjct: 118 TVWLKLNTGMNRLGFTVGEIKEIAQQLTSS--GYEIVLTTHFANADVIDHPNNQQQFELF 175

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQT 234
            + +   +      I+ SL +S+GI+   + H+   RPGI LYG T       K   +Q 
Sbjct: 176 DSTLQMLREQVNPAIKGSLCNSAGIVNWSDRHYDWVRPGIILYGATPVNHATAKQLNLQP 235

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   A I+ I    AG+ V YG +      + I + ++GYADGYP  +S  D  +    
Sbjct: 236 VMHFNASIMAIHTLKAGDSVGYGSRWTAQAPARIGIISVGYADGYPRVIS--DDAYV--- 290

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
                  + G   PI+G++ MDM M D+T +  + +   +Q++G    +D+V   + T +
Sbjct: 291 ------VVAGQQAPIIGRVAMDMLMVDLTHTTEVNLDCPVQLWGNAPSIDEVGSWNDTIS 344

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LL  +  R    Y
Sbjct: 345 YELLSVVTRRPTWIY 359


>gi|194337539|ref|YP_002019333.1| alanine racemase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310016|gb|ACF44716.1| alanine racemase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 365

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 160/357 (44%), Gaps = 27/357 (7%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR----LYTPQARIF 81
           + G+AR   +VK NAYG    ++A  L  +GV+DF V ++ E ++L+    L  P A I 
Sbjct: 22  VGGSARIMGIVKANAYGHNVHRVAETLEKSGVRDFGVANIHEAIELKTGGALKKP-ANIL 80

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQ 140
                 P         ++   +     L    ++ +    +    L+VDTG  RLG    
Sbjct: 81  AFSSPLPSHIPFFLHHDIEMTLCDSLTLQSAEEIAAAENKTIAVQLKVDTGMGRLGTPPA 140

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY-----KGIEAS 195
            A++      +    +L  I +H A  D  ++   + QL+ F+TL + Y     K +   
Sbjct: 141 VAMELLRQIDHSPHLELKGIYTHFA--DSSTAEGTTKQLDAFKTLTAEYEHASSKTVCKH 198

Query: 196 LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAEARIILIRKALAGEL 253
            A+S  IL  P     + RPGI LYG     N    +  + V+  EA++I ++K  AG  
Sbjct: 199 AANSGAILSAPESWLDMVRPGILLYGYHPTKNSPCRLDVRPVMQFEAKVIFVKKVPAGTT 258

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           +SY           IA  A GYADGY   LSG       +V + G  +      P +G +
Sbjct: 259 ISYNRTWTANEPRSIATIAAGYADGYTRALSG-----RATVMINGNTY------PQVGIV 307

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           TMD  M D+     ++ GD   +FG + I  D +A  +GT +Y++L  +  R  + +
Sbjct: 308 TMDQIMVDLGTRHDVKTGDTATLFGWEGIGADSLAGLAGTISYEMLCSVSARVKRIF 364


>gi|115352122|ref|YP_773961.1| alanine racemase [Burkholderia ambifaria AMMD]
 gi|115282110|gb|ABI87627.1| alanine racemase [Burkholderia ambifaria AMMD]
          Length = 356

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 166/362 (45%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++   VVK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYAPEKYRAAWERARACPGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
            +  G   SLA+S+ +L  P+ HF   RPGI LYG    G         ++  +T  + +
Sbjct: 181 ENIAGAR-SLANSAAVLWHPDTHFDWVRPGIILYGASPSGLSADIADTGLKPAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNTLPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 GR 350


>gi|170702444|ref|ZP_02893329.1| alanine racemase [Burkholderia ambifaria IOP40-10]
 gi|170132647|gb|EDT01090.1| alanine racemase [Burkholderia ambifaria IOP40-10]
          Length = 356

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 166/362 (45%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++   VVK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYAPEKYRAAWERARACPGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
            +  G   SLA+S+ +L  P+ HF   RPGI LYG    G         ++  +T  + +
Sbjct: 181 ENIAGAR-SLANSAAVLWHPDTHFDWVRPGIILYGASPSGLSADIADTGLKPAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 GR 350


>gi|257054529|ref|YP_003132361.1| alanine racemase [Saccharomonospora viridis DSM 43017]
 gi|256584401|gb|ACU95534.1| alanine racemase [Saccharomonospora viridis DSM 43017]
          Length = 378

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 155/335 (46%), Gaps = 20/335 (5%)

Query: 11  IDLTALKNNWH--SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +DL A+++N    +  A +  A T AVVK + YG G   +A A   AG     V S++E 
Sbjct: 13  VDLEAIRHNVRLLASRAAASGAETMAVVKADGYGHGAVPVARAAVEAGATWLGVASLDEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
           + LR      R+               + ++   +SS  +L       +         L+
Sbjct: 73  LALRNAGLTTRLMSWLDTPDVDFAPAVERDIDVSVSSTGELARAVDAAARVGRRARVHLK 132

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +R G   +        +  +   ++  + SHLACAD+P       Q ERF    +
Sbjct: 133 IDTGLSRNGCPAELWPTLVKAAAAEDGVEVVGMWSHLACADEPGHPATEAQAERFAAAYA 192

Query: 188 HYKGIEAS----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
             +    S    LA+S+  L  P+ HF L RPGI++YG  + +++   ++  +T  + ++
Sbjct: 193 VAREAGLSPLRHLANSAATLTRPDLHFDLVRPGIAVYG-LNPVSQPEDLRPAMTFRSSVV 251

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           L ++  AGE VSYG     + D+ +A+  +GYADG P TLSG  S            ++ 
Sbjct: 252 LTKRIRAGESVSYGQTWTASADTTVALVPVGYADGVPRTLSGRLSV-----------WLN 300

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           G   P++G++ MD  + D  D    E+G  + +FG
Sbjct: 301 GTRRPVVGRVCMDQLVVDCGDD-EPELGAEVVLFG 334


>gi|19551822|ref|NP_599824.1| alanine racemase [Corynebacterium glutamicum ATCC 13032]
 gi|62389477|ref|YP_224879.1| alanine racemase [Corynebacterium glutamicum ATCC 13032]
 gi|23813648|sp|Q8RSU9|ALR_CORGL RecName: Full=Alanine racemase
 gi|158428171|pdb|2DY3|A Chain A, Crystal Structure Of Alanine Racemase From Corynebacterium
           Glutamicum
 gi|158428172|pdb|2DY3|B Chain B, Crystal Structure Of Alanine Racemase From Corynebacterium
           Glutamicum
 gi|158428173|pdb|2DY3|C Chain C, Crystal Structure Of Alanine Racemase From Corynebacterium
           Glutamicum
 gi|158428174|pdb|2DY3|D Chain D, Crystal Structure Of Alanine Racemase From Corynebacterium
           Glutamicum
 gi|18699004|gb|AAL77207.1| alanine racemase [Corynebacterium glutamicum]
 gi|21323353|dbj|BAB97981.1| Alanine racemase [Corynebacterium glutamicum ATCC 13032]
 gi|41324811|emb|CAF19293.1| ALANINE RACEMASE [Corynebacterium glutamicum ATCC 13032]
          Length = 361

 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 166/373 (44%), Gaps = 24/373 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L  KIDL A+ +N   +  ++G A+  AVVK NAY  G EK+AP +   G   F V ++
Sbjct: 3   LLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATL 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSH-P 123
            E ++LR       +           +   D N+ + VIS          L+     H  
Sbjct: 63  AEAMQLRDIGISQEVLCWIWTPEQDFRAAIDRNIDLAVISP----AHAKALIETDAEHIR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            ++++D+G +R G+  QE              +++ + +HLACAD+P +     Q+  FR
Sbjct: 119 VSIKIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLACADEPENPETDRQIIAFR 178

Query: 184 TLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
             ++     G+E  +    +S   L   + H ++ RPG++ YG        H ++  +T 
Sbjct: 179 RALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVAGLEHGLKPAMTW 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           EA++ ++++  AG+  SYG   +      +AV   GYADG P         H+   F   
Sbjct: 239 EAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMP--------RHAQGKF--- 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-IKLDDVALASGTTNYD 356
              I G   P +G++ MD  +  + D+   +E G    IFG +     D A    T NY+
Sbjct: 288 SVTIDGLDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERLDTINYE 347

Query: 357 LLVRIGTRYAKFY 369
           ++ R   R  + Y
Sbjct: 348 VVCRPTGRTVRAY 360


>gi|210612599|ref|ZP_03289390.1| hypothetical protein CLONEX_01592 [Clostridium nexile DSM 1787]
 gi|210151524|gb|EEA82531.1| hypothetical protein CLONEX_01592 [Clostridium nexile DSM 1787]
          Length = 388

 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 172/384 (44%), Gaps = 43/384 (11%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
           KIDL A+  N   M   +    +  AV+K + YG G  +IA  +     +  F V +++E
Sbjct: 10  KIDLDAIAYNMEQMKQNIRPETKVMAVIKADGYGHGAVQIAEMMERWNYIWGFAVATLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
            V LR    Q  I VL  + P Q         + ++    ++  Y++ M+  +S   A  
Sbjct: 70  AVVLRTEGIQKPILVLGCVFPDQ--------YMEMLKHEIRMNIYTEEMAESISRMAARE 121

Query: 126 -------LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSV 177
                  +++DTG +RLG  + E    T    +K     +  I +H   AD+        
Sbjct: 122 GKTAYMHIKLDTGMSRLGFGINEQSAETIKRISKMPNVNMEGIFTHFTKADEKDKSFTKK 181

Query: 178 QLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           Q++ F  +    K           ++S+GI+  P  +F + R GIS YG   +++++K++
Sbjct: 182 QIQEFVWMTERLKEKNVRFTYEHCSNSAGIIDVPEANFDIVRAGISTYGLYPSEEVDKTN 241

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  +  ++ +  +++   G  VSYGG         IA   +GYADGYP +LS     
Sbjct: 242 VKLKPALALKSHVAFVKEIERGTPVSYGGTFVAKEKMKIATIPVGYADGYPRSLSN---- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   I+G   PILG++ MD  M D+T    +  GD + + G D    + ++ 
Sbjct: 298 -------KGYVLIRGKKAPILGRVCMDQFMVDVTQIEGVSFGDKVTMIGKDGNEILPVEV 350

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           ++  SG  NY+ +  +G R  + Y
Sbjct: 351 LSELSGRFNYEFVCDLGKRIPRVY 374


>gi|269926050|ref|YP_003322673.1| alanine racemase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789710|gb|ACZ41851.1| alanine racemase [Thermobaculum terrenum ATCC BAA-798]
          Length = 376

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 164/372 (44%), Gaps = 23/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A+++N          ++  AVVK +AYG G  +I+  + +AG     V  V EG
Sbjct: 15  VEVDLNAIRHNLRLYLDKCPGSKVIAVVKGDAYGHGIIEISKTVLDAGAWGLGVARVSEG 74

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTF-YSKLMSCGVSHPYAL 126
           + LR     A I VL G    QE K    ++L   +S+   L +  +     G      L
Sbjct: 75  LLLRSSGIDAPIIVL-GYSSEQEIKQAVASDLAISVSTEKMLDWILATAREVGRIPRIHL 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG  RLG+  ++A    H         L  I +H A ADDP   +   QL  F+ LI
Sbjct: 134 EVDTGMRRLGVKFEDAAQIVHYIHGTNSVYLEGIFTHFASADDPEGFLFKRQLSMFQDLI 193

Query: 187 S--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
                +G    +    +S+  L  P  HF   R GI LYG      K++P++  +   + 
Sbjct: 194 HLIRERGEVPPIVHAANSAAALYAPESHFDAVRIGIGLYGVQPLQFKTYPLRPAMALRSV 253

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  +    AGE VSYG           AV   GYADGYP  LS             G+  
Sbjct: 254 VARVLDVHAGEGVSYGHTYVAKESHRAAVIPCGYADGYPRILSN-----------KGEVI 302

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           + G   P++G++ MD  +  + + +   VGD + + G      +    +A  +GT  Y++
Sbjct: 303 VSGIRCPVIGRVCMDNLIVKLPEGVDARVGDAVTLIGSQGSEAVDAGYLARLAGTIPYEI 362

Query: 358 LVRIGTRYAKFY 369
           L  IG R  K Y
Sbjct: 363 LCGIGRRPEKIY 374


>gi|229827601|ref|ZP_04453670.1| hypothetical protein GCWU000182_02990 [Abiotrophia defectiva ATCC
           49176]
 gi|229788239|gb|EEP24353.1| hypothetical protein GCWU000182_02990 [Abiotrophia defectiva ATCC
           49176]
          Length = 401

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 176/378 (46%), Gaps = 32/378 (8%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L A++ N+  +    G N + A +VK +AYG G  K+   L   G     V+S++E 
Sbjct: 23  EINLDAIEYNYKKIKEHIGENVKFAGIVKADAYGHGSVKVGAKLQELGADYLAVSSIDEA 82

Query: 69  VKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           ++LR       I +L G  P ++  ++I       V      L + ++ + C  +    +
Sbjct: 83  MELRFNGITMPILIL-GHTPREQVDRLICFNITQAVTCEAKALEYSAEAVKCKGTLKIHI 141

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFN----KKLGQLSL--IISHLACADDPSSHVNSV--- 177
           +VDTG +RLG  L E   F H         KL  L    I +H A +D+           
Sbjct: 142 KVDTGMSRLGY-LCEGEHFEHGIEGIVNVCKLSNLDAEGIFTHFAVSDEDGEECKEYTDH 200

Query: 178 QLERFRTLISHYKGIEAS------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           QLE F+ +I+  +            A++   +  P+ +  + RPG+ LYG   +  K+  
Sbjct: 201 QLELFKAVITEVEKKSGKAFLLHHCANTGATVNRPDSYMDMVRPGLLLYG-YGEFAKALG 259

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +  +  I+    G  +SYGG    T  + + V   GYADG+   LS   S   
Sbjct: 260 LKPVMSMKTTVSTIKVYPKGTKISYGGIYTTTGKTRMGVVPYGYADGFMRCLSNKYS--- 316

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
              F+  +G ++       G+I MDM M D+TD  SI+VG  I+IFG +  ++ +A  +G
Sbjct: 317 ---FMTEEGAVRQR-----GRICMDMCMIDLTDKFSIDVGSEIEIFGENNPIEAMAEMAG 368

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+L+  +  R  + Y
Sbjct: 369 TIPYELVCAVSKRVHRIY 386


>gi|145589102|ref|YP_001155699.1| alanine racemase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047508|gb|ABP34135.1| alanine racemase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 374

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 177/372 (47%), Gaps = 24/372 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N  +   I   A ++N + +  L+  ++  +V+K  AYG   +     L  +    F + 
Sbjct: 10  NRPILASIHTQAFRHNLNRVRELAPESKIWSVIKARAYGHCFDAALKGL--SSTDGFALL 67

Query: 64  SVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +++ V LR +  + R+ +L G+ H  + ++  + +   V+    Q+ +  K +  G   
Sbjct: 68  DIQDAVWLREHGWEGRVLLLEGLFHENELELAQELSCDLVVHCEAQVEWLEKYIEQG-HK 126

Query: 123 PYA--LQVDTGFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISHLACADDPSSHVN-SV 177
           P++  L+++TG NRLG   +      H  ++F  ++  ++    H A AD          
Sbjct: 127 PFSIFLKMNTGMNRLGFKPEAYRTAFHRLHAFGCRMHHMT----HFANADQADQRPTVGE 182

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPM 232
           Q E F   I    G   SLA+S+ IL   N      RPGI LYG +       I  +H +
Sbjct: 183 QQEVFERTIDGLSG-PTSLANSAAILWHRNALGGWIRPGIMLYGASPTGIYADIEHAH-L 240

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+  ++ II I++  AG+ V YGG+ +      I + A GYADGYP T      + +P
Sbjct: 241 KAVMQLQSEIIDIQELKAGDGVGYGGRYQAPEAMRIGIVACGYADGYPRTAK----DGTP 296

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                G     G + PI+G+++MDM   D+ ++   ++G  ++++G  I +D+VA  S T
Sbjct: 297 VWVSIGAEDGNGIVCPIVGRVSMDMLTIDLRNAPQAKIGSVVELWGDRIPVDEVARMSDT 356

Query: 353 TNYDLLVRIGTR 364
             Y+LL  +  R
Sbjct: 357 IGYELLCAVAPR 368


>gi|253575144|ref|ZP_04852483.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845600|gb|EES73609.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 391

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 173/389 (44%), Gaps = 48/389 (12%)

Query: 14  TALKNNWH--SMNALSGN-----------ARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           T  +  W   S++A++ N            R  AVVK N YG G  + A A  +AG    
Sbjct: 12  TGYRETWAEVSLDAIAHNTGLFRKQIAEGCRLMAVVKANGYGHGAVQAAQAAIHAGADCL 71

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
            V  V+E ++LR       I VL    P G E  +       +  +V       + ++C 
Sbjct: 72  GVALVDEALQLRAAGISQPILVLGYTPPFGVEAAVRQG----ITLTVDTQEVLQETIACA 127

Query: 119 ---GVSHPYALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSH 173
              G +    L+VDTG +R+GLS   A+       +       L  + +H A AD P   
Sbjct: 128 KKQGCAARIHLKVDTGMSRIGLSTTRAVIELAELAAAAAPFVILEGVFTHFADADGPDPA 187

Query: 174 VNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227
               Q  RF+  +   +  G+   +    +S+  +  P  H  L R GI+LYG       
Sbjct: 188 YTLEQFARFQACLDALEAHGLHVPIKHCCNSAATMRFPQMHLDLVRIGIALYGLYPSAQL 247

Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
               +P+Q  +  + +I  +R+   G+ V YG   +   + LIA   IGYADG   TLS 
Sbjct: 248 RLPEYPLQQAMQLKTKIASLRRIKPGQTVGYGRTYRAAEERLIATVPIGYADGLSRTLSN 307

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-----PD 340
                       G   ++G+ VPI+G++ MD TM D+TD  S++ G+ + +FG       
Sbjct: 308 R-----------GFALVRGHRVPIIGRVCMDQTMLDVTDVESVQAGEEVILFGGTGEAAS 356

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I +D+VA   GT NY+++ ++G R  + Y
Sbjct: 357 ISIDEVADWIGTINYEVVCQLGVRVPRVY 385


>gi|238757005|ref|ZP_04618193.1| Alanine racemase, catabolic [Yersinia aldovae ATCC 35236]
 gi|238704835|gb|EEP97364.1| Alanine racemase, catabolic [Yersinia aldovae ATCC 35236]
          Length = 358

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 171/365 (46%), Gaps = 32/365 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           K++L+AL +N + +    G ++  +VVK NAYG G  ++ P L  A    F +  + E V
Sbjct: 8   KLNLSALNHNLNIVRQHVGTSKIWSVVKANAYGHGLARVWPGL--AATDGFALLDLNEAV 65

Query: 70  KLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR    Q  I +L G   P    ++    L   + S  QL     + +  +  P    L
Sbjct: 66  LLREQGWQGPILLLEGFFQPPDLALVDHYRLTTTVHSDWQL---EAIRAARLDAPLNIYL 122

Query: 127 QVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS-VQLERFR 183
           ++++G NRLG   +  EA+    NS +  + +++L+ SH A AD+   H+ +  Q  R +
Sbjct: 123 KLNSGMNRLGFPSEQAEAVWQWANSLSN-VAEVTLM-SHFANADN---HIGAGEQFARIQ 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
            +  H        A+S+ IL  P  H+   RPGI LYG +   +     +  ++ V++  
Sbjct: 178 HVSEHISAARC-FANSAAILRHPETHYDWVRPGIILYGASPSGDIADIAALGLRPVMSLH 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++    G  V YG     +    I V A GYADGYP    G           G  
Sbjct: 237 SEIIALQTLSVGHSVGYGSHYCASEPHRIGVVACGYADGYPRLAPG-----------GTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G ++MDM   D+T      VG  ++++G  + +D+VA A+GT  Y+L+ 
Sbjct: 286 IRVDGVLTHTVGAVSMDMLTVDLTPCPQAGVGSKVEVWGEHLPIDNVAAAAGTVGYELMC 345

Query: 360 RIGTR 364
            +  R
Sbjct: 346 ALAGR 350


>gi|299067425|emb|CBJ38624.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum CMR15]
          Length = 368

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 164/358 (45%), Gaps = 24/358 (6%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL NN   +   + ++R  AV+K NAYG G E+    L  A    F +  ++E V+LR  
Sbjct: 6   ALANNLQVVRRHAAHSRVWAVIKANAYGHGIERAYEGLRQA--DGFGLLDLDEAVRLRQL 63

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
             Q  I +L G   P    ++    L   +    QL     L    +  P ++Q  ++TG
Sbjct: 64  GWQGPILLLEGFFKPEDLALVEQYRLTTTVHCEEQLRM---LELARLKGPVSIQLKINTG 120

Query: 132 FNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
            +RLG +       + H      +G + + ++H + AD P    +  QL  F        
Sbjct: 121 MSRLGFAPAAYRAAWEHARAISGIGTI-VHMTHFSDADGPRGIDH--QLAAFEQATQGLP 177

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIR 246
           G EASL++S+  L  P+ H    RPG+ LYG    G     +   +   +T ++ +I I+
Sbjct: 178 G-EASLSNSAATLWHPSAHRDWVRPGVILYGASPTGVAADIEGTGLMPAMTLKSELIAIQ 236

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG + +  +   I + A GYADGYP    G D  ++P         + G  
Sbjct: 237 DVQPGATIGYGSRFEAEQPMRIGIVACGYADGYPRHAPGWDGNYTPV-------LVDGVR 289

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             ++G+++MDM   D+ +     VG  + ++G  + +D+VA A+GT  Y+L+  +  R
Sbjct: 290 TRMVGRVSMDMITVDLAEVPGARVGAPVTLWGQGLPIDEVAHAAGTVGYELMCALAPR 347


>gi|294788699|ref|ZP_06753940.1| alanine racemase [Simonsiella muelleri ATCC 29453]
 gi|294483181|gb|EFG30867.1| alanine racemase [Simonsiella muelleri ATCC 29453]
          Length = 352

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 173/363 (47%), Gaps = 31/363 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L  +I L  L+ N+  +  + G  +  AV+K NAYG G  + A AL++     F V  +E
Sbjct: 4   LFCEIRLNYLRENYQILKKIHGK-KLLAVIKANAYGHGAVQCAQALHDIA-DGFAVAFLE 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR +     I +L G    +E  ++   +L  VI    QL  +       ++H + 
Sbjct: 62  EAIELREHGITRPIVLLEGTFDAKEYDLVEQYDLWTVIHQQSQLELF-------LAHDWR 114

Query: 126 ------LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +R G    Q A  +T  S + K+  + + ++H +CAD+    +  +Q
Sbjct: 115 KPTTVWLKMDSGMHRTGFFPHQFAAAYTALSQSDKIANI-VKMTHFSCADEAERSMTDMQ 173

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +E F  L  H    E S+A+S+ ++  P       R G++LYG       S  ++ V+  
Sbjct: 174 IESF-DLGCHGLTGEESIANSAAMIRFPEARRDWGRAGLALYGVDPTGEFSGSLKPVMRL 232

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +RI   R     E + YG      R + + + A GYADGYP          +P +    
Sbjct: 233 SSRIFAERILQPHEPIGYGANFYTKRSTRVGLVACGYADGYPRNAPN----ETPIL---- 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              +KG    I+G+I+MDM   D+ DS    VGD +++FG  I + ++A A+G   Y++L
Sbjct: 285 ---VKGLRTKIIGRISMDMLTVDLNDSHE-GVGDEVELFGDLINVQEIADAAGMIPYEIL 340

Query: 359 VRI 361
             I
Sbjct: 341 CNI 343


>gi|107028781|ref|YP_625876.1| alanine racemase [Burkholderia cenocepacia AU 1054]
 gi|116690060|ref|YP_835683.1| alanine racemase [Burkholderia cenocepacia HI2424]
 gi|105897945|gb|ABF80903.1| alanine racemase [Burkholderia cenocepacia AU 1054]
 gi|116648149|gb|ABK08790.1| alanine racemase [Burkholderia cenocepacia HI2424]
          Length = 356

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 166/362 (45%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++  AVVK NAYG G  +  P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG   ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYVPEKYRAAWERARACPGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
               G   SLA+S+ +L  P+ HF   RPGI LYG +     S      +++ +T  + +
Sbjct: 181 ESIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKSAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 AR 350


>gi|255067061|ref|ZP_05318916.1| alanine racemase [Neisseria sicca ATCC 29256]
 gi|255048657|gb|EET44121.1| alanine racemase [Neisseria sicca ATCC 29256]
          Length = 352

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 179/372 (48%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L  +I L  L++N+ ++  + G  +  AV+K +AYG G  + A AL N     F V +V+
Sbjct: 4   LNARIRLDNLRHNYQTLKQIHG-GKMLAVIKADAYGHGAVRCAHALSNL-ADGFAVATVD 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E V+LR       I +L G+    E  I D  NL P + S  QL     L++    +P  
Sbjct: 62  EAVELRESGITNPIVLLEGVFEATEYAIVDKYNLWPGVGSQWQL---EALIAHHWQNPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFN-----KKLGQLSLII--SHLACADDPSSHVNS 176
             L++D+G +R G        F HN  +     K+   +  I+  SH ACAD+P + +  
Sbjct: 119 VWLKMDSGMHRAGF-------FPHNYTSAYTALKQCKHVDSIVKFSHFACADEPDNGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +QLE F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 MQLEAFDLACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              +R+   R       + YG     ++ + + + A GYADGYP       S +SP    
Sbjct: 231 RLTSRVFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----STNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                I+G    I+G+++MDM   ++ D+    +G  ++++G  + +++VA A+G   Y+
Sbjct: 285 -----IEGKRSRIIGRVSMDMITVEL-DASQEGLGAEVELWGDVVNINEVAEAAGMIPYE 338

Query: 357 LLVRIGTRYAKF 368
           +   +  + AKF
Sbjct: 339 IFCNV--KRAKF 348


>gi|171319307|ref|ZP_02908420.1| alanine racemase [Burkholderia ambifaria MEX-5]
 gi|171095489|gb|EDT40456.1| alanine racemase [Burkholderia ambifaria MEX-5]
          Length = 356

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 166/362 (45%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++   VVK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQVRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYAPEKYRAAWERARACPGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
            +  G   SLA+S+ +L  P+ HF   RPGI LYG    G         ++  +T  + +
Sbjct: 181 ENIAGAR-SLANSAAVLWHPDTHFDWVRPGIMLYGASPSGLSADIADTGLKPAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTHIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 GR 350


>gi|325525874|gb|EGD03590.1| alanine racemase [Burkholderia sp. TJI49]
          Length = 344

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 166/356 (46%), Gaps = 28/356 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++  AVVK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRYAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYAPEKYRAAWERARACPGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEARI 242
           ++  G   SLA+S+ +L  P+ HF   RPGI LYG +     S    T     +T  + +
Sbjct: 181 ANIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALSIDDVARHCGTIGYELM 344


>gi|20807662|ref|NP_622833.1| alanine racemase [Thermoanaerobacter tengcongensis MB4]
 gi|23813662|sp|Q8RAK6|ALR1_THETN RecName: Full=Alanine racemase 1
 gi|20516208|gb|AAM24437.1| Alanine racemase [Thermoanaerobacter tengcongensis MB4]
          Length = 388

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 171/380 (45%), Gaps = 33/380 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+++ L A+ +N+  +  + G N +  AV+K +AYG G   +A  L   GV  F V + E
Sbjct: 10  RVEVYLDAITHNFREIKKIVGKNVKIMAVIKGDAYGHGASYVAKFLEKEGVDYFGVATTE 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           E ++LR    +  I +     P Q + I   +L   +  +       K  +         
Sbjct: 70  EALELREKGIKTPILIFGYTPPTQLRQIVKHDLTQTVYDIKYAKELEKESLKQNKRAKVH 129

Query: 126 LQVDTGFNRLG-----LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +++DTG  R+G     L+ +E L+      N +   L  I SH A A +        Q +
Sbjct: 130 IKIDTGLGRIGYIDFDLAQKEILEMA----NMRGLILEGIYSHFAAASEDDRDYCKEQFD 185

Query: 181 RFRTLIS--HYKGIEASLA--SSSGILLGPNY-HFQLTRPGISLYGG--TDKINKSHPMQ 233
           +F  LIS    K ++  L   +++  +L  NY H  + RPGI L+G   + ++ +   ++
Sbjct: 186 KFMNLISSLEKKRLKIPLKHIANAAAILNLNYSHLDMVRPGIILFGAYPSKRVERKVELR 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +    R++ ++   AG  + YG      R S+IA   +GYADG    LS         
Sbjct: 246 ETLRFTTRVVHLKDVPAGFFIGYGKSFVTKRKSVIATIPVGYADGLDRRLSN-------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                K  +KG  VPI+G++ MD  M D+TD   +E+GD + I G      + ++ +A  
Sbjct: 298 ---NYKLLLKGKYVPIVGRVCMDQCMIDVTDVEGVEIGDEVVIIGTQNNETVSVESMADK 354

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T   ++  RI  R  + Y
Sbjct: 355 IETIPQEVFSRISRRVPRVY 374


>gi|193215478|ref|YP_001996677.1| alanine racemase [Chloroherpeton thalassium ATCC 35110]
 gi|193088955|gb|ACF14230.1| alanine racemase [Chloroherpeton thalassium ATCC 35110]
          Length = 387

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 174/390 (44%), Gaps = 58/390 (14%)

Query: 11  IDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L++N   + A  G +R   A+VK NAYG    K+APAL   GV DF V ++ E +
Sbjct: 23  ISLGNLRHNARQIKAQIGQSRRLMAIVKANAYGHNAGKVAPALVQEGVSDFGVANINEAI 82

Query: 70  KLR--LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFY-------------- 112
            LR  L   QAR                D+ ++   S +  Q+ FY              
Sbjct: 83  HLRKALQAAQAR---------------EDSQILAFASPLECQMPFYLQHEIDLTVTNFET 127

Query: 113 SKLMSC-----GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
           +KL        G +    L++DTG  RLG+  +E               L  I +H + +
Sbjct: 128 AKLAEAVSKNHGKNLTVHLKIDTGMGRLGIQPREGFALARYVEASPYLNLKGIYTHFSDS 187

Query: 168 DDPSSHVNSVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
            +  +   + QLE ++ L+S +     + +    A+S  I+   + +  + RPGI LYG 
Sbjct: 188 GEDLAFTRN-QLEIYKKLVSEFEHEAKRTVLKHAANSGAIISDNDTYLDMVRPGILLYGY 246

Query: 223 T--DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           T    +  +  ++ V+  +A ++  +    G  VSYG +   TR + +A  ++GYADGY 
Sbjct: 247 TPAKSLTTALDLRRVMQFQAHVLFTKWVEKGATVSYGRRWIATRRTRVATVSVGYADGYH 306

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
             LS              K  I G +   +G +TMD  M  + +  S++VGD + +FG D
Sbjct: 307 RALSN-----------KAKVCINGNLYEQIGSVTMDQIMVSLGEDSSVQVGDPVVLFGWD 355

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +  +D+A   GT  Y+LL  +  R  + +
Sbjct: 356 GLGANDLAEQIGTIGYELLCAVSPRVKRVF 385


>gi|291003863|ref|ZP_06561836.1| alanine racemase [Saccharopolyspora erythraea NRRL 2338]
          Length = 378

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 170/376 (45%), Gaps = 51/376 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+ID+ A+++N   + A +  ART  +VK + YG G   +A A   AG     V ++ E 
Sbjct: 11  LRIDVDAIRHNVGVLAARAAGARTMVIVKSDGYGHGAVTVARAALEAGAGQIGVAALGEA 70

Query: 69  VKLRLYTPQARIFVL-------------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           V LR     A +                +G+      +     L  + ++  +L   ++L
Sbjct: 71  VALREAGITAPLMCWLYSRGDDFAPALRHGVELSASSV---RGLREIAATAAELGLVARL 127

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSS 172
                     L++DTG  R G    E  +    +   +     ++  + SHLACAD+   
Sbjct: 128 H---------LKIDTGLCRSGCPEAEWPNLVDEAAKAEADGHVEVVAVWSHLACADELGH 178

Query: 173 HVNSVQLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-- 226
                Q  RFR      +    G    LA+S+ +L  P+ HF++ RPGI++YG  D +  
Sbjct: 179 PSIDNQALRFRRAYERARTAGLGPIRHLANSAAVLTRPDLHFEMVRPGIAVYG-LDPVPQ 237

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           +  H ++  +T  + + L ++  AGE VSYG      R   +A+  +GYADG P TLSG 
Sbjct: 238 DGDHGLRPAMTFRSSVSLTKRVAAGESVSYGHTWTADRPVNLALVPVGYADGVPRTLSG- 296

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                 SV+L G+        P++G++ MD  +  + D   +  GD + +FGP  + +  
Sbjct: 297 ----RMSVWLAGR------RRPVVGRVCMDQLVV-LCDDDVVREGDEVILFGPGDRGEPT 345

Query: 347 ALAS----GTTNYDLL 358
           A       GT +Y+++
Sbjct: 346 AAEWADELGTIHYEIV 361


>gi|21223124|ref|NP_628903.1| alanine racemase [Streptomyces coelicolor A3(2)]
 gi|6647408|sp|O86786|ALR_STRCO RecName: Full=Alanine racemase
 gi|3449257|emb|CAA20401.1| putative alanine racemase [Streptomyces coelicolor A3(2)]
          Length = 391

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 175/388 (45%), Gaps = 42/388 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N  ++   +  A   AVVK +AYG G    A A   AG       + +E
Sbjct: 17  RAEIDLAALRANVRALRERAPGAALMAVVKADAYGHGAIPCARAAVAAGATWLGTATPQE 76

Query: 68  GVKLRLYTP----QARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGV 120
            + LR   P      RI        G  +   +  L   +  + ++ ++T  ++  + GV
Sbjct: 77  ALALRAAEPGLPDDVRIMCWLWTPGGPWREAVEARLDVSVSAMWAMEEVTGAAR--AAGV 134

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTH------NSFNKKLGQLSLIISHLACADDPSSHV 174
                L+ DTG  R G   Q   D+         +  + L +++ + SH ACAD+P    
Sbjct: 135 PARVQLKADTGLGRGG--CQPGADWERLVGAALRAEEEGLLRVTGLWSHFACADEPGHPS 192

Query: 175 NSVQLERFRTLISH--YKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
            + QL RFR + ++   +G+      +A+S   L  P+ HF L RPGI++YG +      
Sbjct: 193 IAAQLTRFREMTAYAEQRGLRPEVRHIANSPATLTLPDAHFDLVRPGIAMYGVSPSPEIG 252

Query: 230 HP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            P    ++ V+T  A + L+++   G  VSYG       ++ + +  +GYADG P     
Sbjct: 253 TPADFGLRPVMTLAASLALVKQVPGGHGVSYGHHYTTPGETTLGLVPLGYADGIP----- 307

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DI 341
               H+ S    G   + G    + G+I MD  + D+      E G    +FGP    + 
Sbjct: 308 ---RHASS---SGPVLVDGKWRTVAGRIAMDQFVVDLGGDRP-EPGAEAVLFGPGDRGEP 360

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
             +D A A+GT  Y+++ RIG+R  + Y
Sbjct: 361 TAEDWAQAAGTIAYEIVTRIGSRVPRVY 388


>gi|330952099|gb|EGH52359.1| alanine racemase [Pseudomonas syringae Cit 7]
          Length = 308

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 159/322 (49%), Gaps = 32/322 (9%)

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC 118
           F V  +EE ++LR    +A + +L G     E  +I + +L  V+ +V QL    +    
Sbjct: 6   FAVACIEEALELRTAGIRAPVLLLEGFFEADELALIVEHDLWTVVHAVWQLEAIEQ-ARL 64

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHV 174
           G      L++DTG +R+GL   E       ++ + L  G+++ I+  SH + AD+ +S  
Sbjct: 65  GKPITVWLKLDTGMHRVGLHPHE----YQAAYQRLLATGKVARIVLMSHFSRADELNSAC 120

Query: 175 NSVQLERFRTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           +  QL  F T     KG+  E SL +S  +L  P      +RPGI LYG T   ++ HP+
Sbjct: 121 SDEQLAVFETF---RKGLAAETSLKTSPAVLGWPQIPSDWSRPGIMLYGAT-PFDQVHPL 176

Query: 233 ----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               Q V+T E++II +R+   GE V YG      R   I V A+GYADGYP        
Sbjct: 177 ADRLQPVMTLESKIISVRELPVGEPVGYGATFVCDRPLRIGVVAMGYADGYP-------- 228

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
            H+P+   G    I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA 
Sbjct: 229 RHAPT---GTPVQIDGQPSRLLGRVSMDMLSVDLTDVPQAGLGSRVELWGKQVLASEVAQ 285

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
            + T  Y++   +  R  + Y+
Sbjct: 286 RAETIPYEIFCNL-RRVPRIYS 306


>gi|294785981|ref|ZP_06751268.1| alanine racemase [Fusobacterium sp. 3_1_27]
 gi|294486318|gb|EFG33681.1| alanine racemase [Fusobacterium sp. 3_1_27]
          Length = 356

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 177/372 (47%), Gaps = 36/372 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L   GV+ F V ++EE 
Sbjct: 5   IEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L+    + +I +L G     E I      + V ISS+ QL F   L+   ++    L+
Sbjct: 65  IELQEAGIKDKILIL-GASFEDELIEATKRGVHVAISSMGQLQF---LVDKNLNPNIHLK 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QLERFRT 184
            DTG  RLG  + EA        N  L  L  I SHL+ +D  +    +    Q+E+F+ 
Sbjct: 121 FDTGMTRLGFEVNEAEKVIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKFKK 179

Query: 185 LISHYK-GIE-ASLASSSGILLGPNYHF----QLTRPGISLYGGTDKINKSHP-MQTVVT 237
           +++     +E   +++S+GI    N+H      L R GI +Y  T   NK  P ++ + T
Sbjct: 180 IVNSLNLNLEYIHISNSAGI---TNFHNDILGNLVRLGIGMYSFTG--NKKTPYLKNIFT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++R++ I+K      VSYG    L  DS  AV  IGYADG    LS            G
Sbjct: 235 IKSRVLFIKKVNKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLSK-----------G 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNY 355
               I  +   I+G I MDMTM  I   +  SI++G+ + +   DI LD++ +      +
Sbjct: 284 SYVLINNHRCEIIGNICMDMTMIRIPKEIENSIKIGNEVTVINADI-LDNLNIPELCV-W 341

Query: 356 DLLVRIGTRYAK 367
           + +  IG R  +
Sbjct: 342 EFMTGIGKRVKR 353


>gi|187736490|ref|YP_001878602.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426542|gb|ACD05821.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835]
          Length = 368

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 176/378 (46%), Gaps = 39/378 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A+++N + +   +       VVK  AYG G E++   L + G+  F V +V E  
Sbjct: 12  EIDLGAIRHNLNVVKQAAKGEYYMPVVKAGAYGHGLEQVCRTLDSEGIAFFGVANVGEAR 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQV 128
           ++     + R ++L    P + + I        IS++ +   Y+ L    G + P  L V
Sbjct: 72  RISQAGCRTRPYILGPAFPEEREEIVLNGWRSFISTMEEAAHYNSLARLYGKTLPIHLSV 131

Query: 129 DTGFNRLGL---SLQEALDFTHNSFNKKLGQL-SLII----SHLACADDPSSHVNSVQLE 180
           DTG  R G     L+E L         +LG+L SL +    +HL CAD+    +   Q+ 
Sbjct: 132 DTGMGRGGFLPDQLEELLS--------RLGELDSLHLEGLGAHLPCADE-DREITLRQIS 182

Query: 181 RFRTLISHYKGI----EASLASSSGILLGPNYHF---QLTRPGISLYGGTDKINK-SHPM 232
           RF  + +  +         LA+S+  L   +Y      + RPG+ LYG +   +  +  +
Sbjct: 183 RFEQMAARIREKLPLKYCHLANSAASL---DYEIPSNNMCRPGLVLYGFSPIPSPWAAQL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +   +R+ ++R    G  +SYGG       + +A   IGYADGY  +L+        
Sbjct: 240 KPAMALFSRLTVVRTLPEGHGISYGGTFVTDHPTRVATVGIGYADGYLRSLA-------- 291

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
               G +  + G   P+LG++TMD  M D++ +   E G   +I GP I + ++A  +GT
Sbjct: 292 --HKGARVMVDGVSCPLLGRVTMDQIMVDVSRAPHAEPGMTAEIMGPHIPVTELAEKAGT 349

Query: 353 TNYDLLVRIGTRYAKFYT 370
            ++++   IG R  + YT
Sbjct: 350 ISWEIFTGIGPRVPRHYT 367


>gi|304316039|ref|YP_003851184.1| alanine racemase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777541|gb|ADL68100.1| alanine racemase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 388

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 175/375 (46%), Gaps = 27/375 (7%)

Query: 10  KIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L  + +N+  +  ++   A   AVVK NAYG G  +I+  L   GV    V +++E 
Sbjct: 11  EVNLNNIIHNYKEIRKITDKKAGIMAVVKANAYGHGSYEISKELIKCGVDYLAVATIDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           ++LR +     I VL G  P +   +I   ++      +  +   SK  +  G      +
Sbjct: 71  LELREHGISKPILVL-GYTPSKFADVIVKYDITQTAFELGYVKEISKEAIKQGKDAKIHV 129

Query: 127 QVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG  R+G + + +A +      + K   +  I SH + +D+        Q + F  L
Sbjct: 130 KIDTGMGRIGYNDMNKAYEEIVAMTSLKGIYIEGIFSHFSSSDERDKEYTMRQFKIFNDL 189

Query: 186 ISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTVVTA 238
               K  GI+     +A+S+ IL  P  H  + RPGI LYG   +++++K   ++  ++ 
Sbjct: 190 TDRLKRSGIDIPIRHIANSAAILDLPETHLDMVRPGIILYGSYPSEEVDKKISLKCTISL 249

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ++I+ I+    GE +SY    K +R S IA   IGYADG    LS   + HS       
Sbjct: 250 RSKIVYIKDVPEGEYISYNRTYKTSRKSRIATLPIGYADGLNRLLS---NNHSV------ 300

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
              IKG   PI+GKI MD  M D+T    ++ GD   I G      +  D++A    T +
Sbjct: 301 --IIKGKYAPIVGKICMDQCMVDVTSIEGVKEGDVATIMGESDGKIVSADEIANKLKTIS 358

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   I  R  + Y
Sbjct: 359 YEVYCGISRRVPRIY 373


>gi|134045109|ref|YP_001096595.1| alanine racemase [Methanococcus maripaludis C5]
 gi|132662734|gb|ABO34380.1| alanine racemase [Methanococcus maripaludis C5]
          Length = 373

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 170/379 (44%), Gaps = 35/379 (9%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL+A+KNN   +  ++   ++  AVVK NAYG G  +++      G     V    E 
Sbjct: 9   EIDLSAIKNNIEEIRRITNPKSQVMAVVKANAYGHGAVEVSKVCLENGADRLAVARSTEA 68

Query: 69  VKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I V  Y      EK++ +   + V S     +        G      ++
Sbjct: 69  LELRNAGITCPILVFGYCTEEEIEKMVENDITLTVYSFETASSIQKTAEKLGKHPKIHIK 128

Query: 128 VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VDTG +RLG L  ++A++        +  ++  I +H A AD+      ++Q  RF   +
Sbjct: 129 VDTGMSRLGFLPRKDAVETIQKIMELENIEVEGIYTHFADADNSDKTYTTLQFSRFTNFL 188

Query: 187 SHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHPMQT 234
              +  E  +     ++S+ I+  P  H  L RPGI LYG         ++IN    ++ 
Sbjct: 189 HDLEENEIFIPIKHASNSAAIIDHPETHLNLVRPGIILYGLYPSELVHKERIN----LKP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ +  +  +++      +SYG   +  + S IA   IGYADG+   L           
Sbjct: 245 AMSLKVLVTHVKEVPENTKISYGCTFETKKPSKIASLPIGYADGFTRMLKN--------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I G  VP++G+I MD  M D++   +++VGD + IFG      I +++     
Sbjct: 296 ---GYVLIHGSRVPVIGRICMDQCMIDVSYIENVQVGDVVTIFGTQENETIPIEEFGEKL 352

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+L+  + +R  + Y
Sbjct: 353 GTINYELVCMVASRVPRKY 371


>gi|167629789|ref|YP_001680288.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1]
 gi|167592529|gb|ABZ84277.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1]
          Length = 409

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 169/378 (44%), Gaps = 30/378 (7%)

Query: 10  KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I L+A  +N   +  A    AR  AV+K + YG G   +A      GV  F V  ++E 
Sbjct: 42  EIRLSAFAHNLQVLRRATQPQARLMAVIKADGYGHGAVALAWEAVRQGVDCFVVALLDEA 101

Query: 69  VKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +KLR       I +L    P    +++ +     V          +  +  G +    L+
Sbjct: 102 LKLRDAGITTPILILGYTPPAACYRVVAEDLSQAVYCRTVAEALSAAALRLGRTARIHLK 161

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           V+TG  R+G    E +             +  + SH A AD+P       QLERF T+  
Sbjct: 162 VETGMGRVGFQGDEGVREMLAIARLPGIAVEGVFSHFATADEPDKSFAREQLERFLTITG 221

Query: 188 HYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP-MQTVVTAE 239
             +  G++  +   A+S+ IL  P  H +  RPGI+LYG +  D +      +  V+T +
Sbjct: 222 RLQQAGLDIPMRHMANSAAILDLPESHLEGVRPGIALYGSSPFDGVRWDGAFLVPVMTLK 281

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARII I++  AG  +SYG   +  R + IA   +GYADG   TLSG         + G +
Sbjct: 282 ARIIFIKEVAAGTPISYGCTYRCPRRTRIATIPLGYADGIRRTLSG-----RIGAYKGER 336

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--------PDIKLDDVALASG 351
            F      P +G+I MD  M DI D+   E GD + +FG            ++D A A G
Sbjct: 337 YF------PQVGRICMDQFMIDIGDAELAE-GDEVTLFGRWQEGGTWRTAPVEDWARADG 389

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++L  I  R  + Y
Sbjct: 390 TISYEILSGISPRVPRHY 407


>gi|313905464|ref|ZP_07838828.1| alanine racemase [Eubacterium cellulosolvens 6]
 gi|313469648|gb|EFR64986.1| alanine racemase [Eubacterium cellulosolvens 6]
          Length = 380

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 185/392 (47%), Gaps = 43/392 (10%)

Query: 4   NEFLRL--KIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            E+LR   ++ L A+++N        G+  +  AVVK NAYG G  ++A  L      DF
Sbjct: 2   EEYLRTYAEVSLAAIEHNIDEARKRIGSGTKLLAVVKANAYGHGAVRVARHLQEK--VDF 59

Query: 61  F-VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
           F V ++EEG++LR       I  L  I P + + +   ++ P I  +      S K  S 
Sbjct: 60  FAVATLEEGLELREAGIHKPILDLGYISPAEYEDMILADIRPSIYHLEDAEILSRKAASL 119

Query: 119 GVSHPYALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           G S    + +DTG  R+G  + E  A      S    L ++  + +HL+CAD        
Sbjct: 120 GRSAKLHIALDTGMTRIGFQVTEGDADQIREISLMPNL-EIEGMFTHLSCADMVDKTYCD 178

Query: 177 VQLERFRTLISHYKGIEASL-----ASSSGIL---LGPNYHFQLTRPGISLYG--GTDKI 226
            Q E++ T+++  +     +      +S+ ++   +   + + + R GI+ YG   ++++
Sbjct: 179 GQFEKYDTMLAMLEERNVRIPIRHVCNSAAVMEFDIDEKHRYDMVRTGITNYGIYPSEEV 238

Query: 227 NKSH-PMQTVVTAEARIILIRKALAGELVSYGG----QKKLTRDSLIAVAAIGYADGYPL 281
            K +  +   +  +A +I +++   G  VSYG     QK +T+   IA  +IGYADGYP 
Sbjct: 239 KKENMNLIPALAWKAHVIHVKEVAPGIGVSYGATFVTQKPVTK---IATVSIGYADGYPR 295

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
            LS             G+  I G   PILG++ MD  M D+++   + V D + + G D 
Sbjct: 296 ALSS-----------KGRVLIHGKTAPILGRVCMDQMMVDVSEIPDVAVEDVVTLVGRDG 344

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              I ++++A  SG  NY++L  I  R  + Y
Sbjct: 345 EECISIEEIADPSGRFNYEMLCDISPRVRRVY 376


>gi|117927564|ref|YP_872115.1| alanine racemase [Acidothermus cellulolyticus 11B]
 gi|117648027|gb|ABK52129.1| alanine racemase [Acidothermus cellulolyticus 11B]
          Length = 405

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 179/386 (46%), Gaps = 48/386 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A++ N   + A++G     AVVK + YG G    A A    G     V  VEE + 
Sbjct: 34  VDLGAIRENVRRLRAVTG-VDVMAVVKADGYGHGLLPAARAAVRGGASWLGVAFVEEALA 92

Query: 71  LRLYTPQARIFVLYGIHPGQ---EKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           LR+      I  L    PG+   E I  D +L   +S+   L+   +  +  G +    L
Sbjct: 93  LRMAGIDVPILCLLAA-PGERFAEAIAADVDL--AVSAEWALSEVCRAATTAGRTARIHL 149

Query: 127 QVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +VDTG +R G +  E  D    T  +    L ++  I SHL   D+P     +VQ+ERF 
Sbjct: 150 EVDTGLSRGGATPAEWPDLLAATAQARAAGLVEVVGIWSHLVHGDNPEHADTTVQVERFD 209

Query: 184 TL--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
               ++   GI  +   LA+S G LL P   + L RPGI++YG +       P   +V+A
Sbjct: 210 EALAVAERFGIRPAVRHLANSGGALLAPRTRYDLVRPGIAVYGLS-------PAPALVSA 262

Query: 239 -----------EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
                       A++ L+++  AGE +SYG + +  R + +A+  +GYADG P   + + 
Sbjct: 263 GELGLRPAMHLRAQVALVKELPAGEGISYGHRYRTLRPTRVALIPLGYADGIPRQATNVA 322

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKL 343
               P+V   G+  I        G + MD  + D+     +  GD + IFGP    +   
Sbjct: 323 PVWFPAV---GRRTIS-------GTVCMDQFVVDVGPDAPVAAGDDVVIFGPGDDGEPTA 372

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           D+ A A GT +Y+++ RIG R  + Y
Sbjct: 373 DEWASAVGTISYEIVSRIGARVPRVY 398


>gi|257063503|ref|YP_003143175.1| alanine racemase [Slackia heliotrinireducens DSM 20476]
 gi|256791156|gb|ACV21826.1| alanine racemase [Slackia heliotrinireducens DSM 20476]
          Length = 434

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 174/384 (45%), Gaps = 37/384 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL A++NN   +  +     R  AVVK + YG G  ++A A   AG     V  V E
Sbjct: 63  VEVDLGAIRNNVQVVKRIIPAGCRFMAVVKADGYGHGAVEVARASIAAGANQLAVAGVYE 122

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
            V+LR     A I VL    P  E I  +   +++P + S      Y+++    G+  PY
Sbjct: 123 AVELRKAGITAPILVLS--EPPAESIPLLLAYDIMPSVYSAEFAIAYAEMADLHGMRAPY 180

Query: 125 ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L V+TG NR+G+   E +DF     F++ L ++    +H A AD   +   S+Q  RF 
Sbjct: 181 HLAVNTGMNRIGVRFDEVIDFCRQVEFHRALDRVG-TFTHFATADCAETFDFSLQFRRFC 239

Query: 184 TLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSH-PMQTVV 236
            +I   +  G++  +   A+S+  L  P  H  + R GISLYG    I  + H  ++  +
Sbjct: 240 EVIDGMRQVGLDPGIVHCANSAATLRYPQTHLDMVRFGISLYGYHPCIETRGHFDLRPAM 299

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  ARI  +      E VSYG   +      I    +GYADG+   LSG       + F+
Sbjct: 300 SLHARITAVNTPPMSEGVSYGLHYRSPGSVKICAVPVGYADGFSRGLSGR------TAFI 353

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-------TDSLSIEVGDYIQIFGPD----IKLDD 345
            G     G +   +G I MD  MF++          L   VGD + +FG      I ++D
Sbjct: 354 YG-----GRLCKQVGNICMDQCMFEVDLRTSAMRSRLDPHVGDEVVLFGSKDGCTIYVED 408

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +     T  ++++  +  R  K Y
Sbjct: 409 LCDVLNTIPHEIICAMSLRMPKVY 432


>gi|45655817|ref|YP_003626.1| alanine racemase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|73921668|sp|Q75FF2|ALR_LEPIC RecName: Full=Alanine racemase
 gi|45602788|gb|AAS72263.1| alanine racemase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 389

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 171/377 (45%), Gaps = 40/377 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I   +L NN  +  + L  N+   A++K NAYG G E +      AG+    V S+EE
Sbjct: 19  IEISKRSLSNNLDNFRSILRPNSTLTAILKSNAYGHGIEPMTRLCIEAGISRIGVNSIEE 78

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            + +R    +  I ++  I +P + K ++ D N   V S        S  +     H   
Sbjct: 79  ALLIRNIDSKIPILIMGEIQNPEKRKNVLSDPNFWIVFSRPETARILSSFLPAPKLH--- 135

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS-VQLERFRT 184
           L++DTG  RLG S  E L  T +        L  I +H A  +D   H  S +Q ++F  
Sbjct: 136 LKIDTGMGRLG-SHGETLKQTLSELKNVGITLGGICTHFASTEDVLEHKYSLMQTQKFEE 194

Query: 185 LISHYKG------IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----------NK 228
            I   K       I  + AS+S +L  PN HF + R GISLYG    I          NK
Sbjct: 195 AIFLAKSFGYNHLIRHACASASTMLF-PNAHFDMVRIGISLYGLWPSIQTRLSLNLTGNK 253

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  +  +++ ++RI+ I+   A   + YG   + +  + +A+  +GY +G    LS    
Sbjct: 254 NFQLNPILSWKSRIVHIQYHPADSYIGYGSTFQTSYPTKVAIVPVGYYEGLDRKLSS--- 310

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   + G    I+G+I M+MTM D+T     EVG  + I G D    I  D
Sbjct: 311 --------NGDMLVLGKKARIIGRICMNMTMLDVTHIPGAEVGSIVTIIGQDGEESITAD 362

Query: 345 DVALASGTTNYDLLVRI 361
           D+A  + T NY+++ RI
Sbjct: 363 DLADRTHTINYEVMTRI 379


>gi|78066817|ref|YP_369586.1| alanine racemase [Burkholderia sp. 383]
 gi|77967562|gb|ABB08942.1| Alanine racemase region [Burkholderia sp. 383]
          Length = 356

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 165/362 (45%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++  AVVK NAYG G  +  P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG L  +    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYLPEKYRAAWERARACHGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEARI 242
            +  G   SLA+S+ +L  P+ HF   RPGI LYG +     S    T     +T  + +
Sbjct: 181 ENIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIAKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D++      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLSPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 GR 350


>gi|134103194|ref|YP_001108855.1| alanine racemase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915817|emb|CAM05930.1| alanine racemase [Saccharopolyspora erythraea NRRL 2338]
          Length = 378

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 170/376 (45%), Gaps = 51/376 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+ID+ A+++N   + A +  ART  +VK + YG G   +A A   AG     V ++ E 
Sbjct: 11  LRIDVDAIRHNVGVLAARAAGARTMVIVKSDGYGHGTVTVARAALEAGAGQIGVAALGEA 70

Query: 69  VKLRLYTPQARIFVL-------------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           V LR     A +                +G+      +     L  + ++  +L   ++L
Sbjct: 71  VALREAGITAPLMCWLYSRGDDFAPALRHGVELSASSV---RGLREIAATAAELGLVARL 127

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSS 172
                     L++DTG  R G    E  +    +   +     ++  + SHLACAD+   
Sbjct: 128 H---------LKIDTGLCRSGCPEAEWPNLVDEAAKAEADGHVEVVAVWSHLACADELGH 178

Query: 173 HVNSVQLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-- 226
                Q  RFR      +    G    LA+S+ +L  P+ HF++ RPGI++YG  D +  
Sbjct: 179 PSIDNQALRFRRAYERARTAGLGPIRHLANSAAVLTRPDLHFEMVRPGIAVYG-LDPVPQ 237

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           +  H ++  +T  + + L ++  AGE VSYG      R   +A+  +GYADG P TLSG 
Sbjct: 238 DGDHGLRPAMTFRSSVSLTKRVAAGESVSYGHTWTADRPVNLALVPVGYADGVPRTLSG- 296

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                 SV+L G+        P++G++ MD  +  + D   +  GD + +FGP  + +  
Sbjct: 297 ----RMSVWLAGR------RRPVVGRVCMDQLVV-LCDDDVVREGDEVILFGPGDRGEPT 345

Query: 347 ALAS----GTTNYDLL 358
           A       GT +Y+++
Sbjct: 346 AAEWADELGTIHYEIV 361


>gi|302524053|ref|ZP_07276395.1| alanine racemase [Streptomyces sp. AA4]
 gi|302432948|gb|EFL04764.1| alanine racemase [Streptomyces sp. AA4]
          Length = 373

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 159/339 (46%), Gaps = 29/339 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   + A +  A    VVK + YG G   +  A   AG       S++E + 
Sbjct: 12  IDLGALRHNVSLLAARAPGAAVMCVVKADGYGHGAVPVGRAAVEAGASWLGTCSLQEALD 71

Query: 71  LRLYTPQARIFVLYGIH-----PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
           LR      R+F    +      PG E    D +L   +SS+ +L          G     
Sbjct: 72  LRAAGLSGRLFSWLDVPELDFTPGIEA---DIDL--GVSSLGELARVEAAAERAGKRARV 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++DTG +R G       +    +   +  ++  I SHLACAD+        Q + F  
Sbjct: 127 HLKIDTGLSRNGCPPAAWPELVEAAAKARGVEVVAIWSHLACADELGHASIDAQAKLFAE 186

Query: 185 LISHYK--GIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
                +  G++    LA+S+  L  P+ HF+L RPGI++YG  + +     ++ V+T  +
Sbjct: 187 AYDAARAAGLDPIRHLANSAATLTRPDLHFELVRPGIAMYG-LNPVPTDDDLRPVMTFRS 245

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVFLGGK 299
            ++L +   AGE VSYG       D+ +A+  +GYADG P TLSG +D      V+LGGK
Sbjct: 246 TVVLTKPLAAGESVSYGHTWTAREDTTLALVPVGYADGVPRTLSGRMD------VWLGGK 299

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                   P++G+I MD  + ++ +     VGD + +FG
Sbjct: 300 ------RRPVVGRICMDQLVVNVGNEDVPTVGDEVVLFG 332


>gi|307297643|ref|ZP_07577449.1| alanine racemase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916903|gb|EFN47285.1| alanine racemase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 369

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 173/380 (45%), Gaps = 27/380 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+S +   L IDL+A + N   ++  +  A+   VVK +AYG G  +++     +GV   
Sbjct: 1   MNSRKTFAL-IDLSAYRQNLVYLSGKASPAKLMVVVKADAYGHGAVELSKVAQESGVDRL 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V  +EEG+K+R       I VL  +   +     + +L   +SS  QL     ++    
Sbjct: 60  AVAFLEEGIKIRQSGISLPILVLNYVEKKEIPTAKEFSLTLSLSSFAQL---ENIIGLNK 116

Query: 121 SHP-YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             P + L VDTG  RLGL  +E+++  +NS  +K   ++   +H A AD+  S     Q 
Sbjct: 117 QLPDFQLVVDTGMRRLGLEWEESIEL-YNSAVRKGINITGAYTHFATADEKGSGFVLEQR 175

Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           E F   +        +  E  +++S+G +   N  F   R GI+ YG          ++ 
Sbjct: 176 EAFGRFLHGLGQRRNRHFETHISNSAGTIYFDNSDFSYVRAGIATYGLQPSKETDENLKP 235

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + +  +++   G  VSYG      RD L+A   +GYADGY   LS          
Sbjct: 236 VLSWVSCVSFVKRIRTGYSVSYGRTFVADRDMLVATIPVGYADGYNRLLSNR-------- 287

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIF----GPDIKLDDVALA 349
              G   I G    +LG++ MD  + DI+     + +GD + I     G  I  +++A  
Sbjct: 288 ---GYVIISGKRCKVLGRVCMDQFVVDISHIEKPVSIGDEVVIVGTQEGESISAEEIADL 344

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  I +R  + Y
Sbjct: 345 CGTINYEVVCSISSRVPRVY 364


>gi|24217378|ref|NP_714861.1| alanine racemase [Leptospira interrogans serovar Lai str. 56601]
 gi|73921669|sp|Q8EX97|ALR_LEPIN RecName: Full=Alanine racemase
 gi|24202458|gb|AAN51876.1|AE011618_3 alanine racemase [Leptospira interrogans serovar Lai str. 56601]
          Length = 389

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 171/377 (45%), Gaps = 40/377 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I   +L NN  +  + L  N+   A++K NAYG G E +      AG+    V S+EE
Sbjct: 19  IEISKRSLSNNLDNFRSILRPNSTLTAILKSNAYGHGIEPMTRLCIEAGISRIGVNSIEE 78

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            + +R    +  I ++  I +P + K ++ D N   V S        S  +     H   
Sbjct: 79  ALLIRNIDSKIPILIMGEIQNPEKRKDVLSDPNFWIVFSRPETARILSSFLPAPKLH--- 135

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS-VQLERFRT 184
           L++DTG  RLG S  E L  T +        L  I +H A  +D   H  S +Q ++F  
Sbjct: 136 LKIDTGMGRLG-SHGETLKQTLSELKNVGITLGGICTHFASTEDVLEHKYSLMQTQKFEE 194

Query: 185 LISHYKG------IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----------NK 228
            I   K       I  + AS+S +L  PN HF + R GISLYG    I          NK
Sbjct: 195 AIFLAKSFGYNHLIRHACASASTMLF-PNAHFDMVRIGISLYGLWPSIQTRLSLNLTGNK 253

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  +  +++ ++RI+ I+   A   + YG   + +  + +A+  +GY +G    LS    
Sbjct: 254 NFQLNPILSWKSRIVHIQYHPADSYIGYGSTFQTSYPTKVAIVPVGYYEGLDRKLSS--- 310

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   + G    I+G+I M+MTM D+T     EVG  + I G D    I  D
Sbjct: 311 --------NGDMLVLGKKARIIGRICMNMTMLDVTHIPGAEVGSIVTIIGQDGEESITAD 362

Query: 345 DVALASGTTNYDLLVRI 361
           D+A  + T NY+++ RI
Sbjct: 363 DLADRTHTINYEVMTRI 379


>gi|237739916|ref|ZP_04570397.1| alanine racemase [Fusobacterium sp. 2_1_31]
 gi|229423524|gb|EEO38571.1| alanine racemase [Fusobacterium sp. 2_1_31]
          Length = 354

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 172/371 (46%), Gaps = 36/371 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  L+ N     VVK NAYGLG  +IA  L   GV  F + ++EE 
Sbjct: 5   VEIDKENLKYNILKLKELADNREVLGVVKANAYGLGSVEIAKILQEVGVNFFGLANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++L+    +A   +L      +        +   ISS+ QL F   L+   ++    L+ 
Sbjct: 65  IELQDAGIKANFLILGASFEDELVEATKRGIHTAISSIQQLRF---LVENNLNPNIHLKF 121

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTLI 186
           DTG  RLG  + EA +  +     K   L+L  I +HL+ +D  +    +  LE+     
Sbjct: 122 DTGMTRLGFEVDEAEEVINFC---KTNNLNLVGIFTHLSDSDGNTIDTKNFTLEQIEKFK 178

Query: 187 SHYKGIEAS---LASSSGILLGPNYHF----QLTRPGISLYGGTDKINKSHP-MQTVVTA 238
           +  KG++     +++S+GI    N+H      L R GI++Y  T   NK  P ++ V T 
Sbjct: 179 NIVKGLDLKYIHISNSAGI---TNFHENILGNLVRAGIAMYSFTG--NKKTPCLKNVFTI 233

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +++++  +K      VSYG    L  DS  AV  IGYADG    L+            GG
Sbjct: 234 KSKVLFTKKVNKDSFVSYGRHYTLPADSTYAVIPIGYADGLKKYLTK-----------GG 282

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
              I  Y   I+G I MDMTM  I   L  +I++ D + +   DI +D++ +      ++
Sbjct: 283 YVLINNYRCEIIGNICMDMTMVRIPKELEKTIKISDEVTVINADI-IDNLNIPELCV-WE 340

Query: 357 LLVRIGTRYAK 367
            +  IG R  +
Sbjct: 341 FMTGIGRRVKR 351


>gi|257869522|ref|ZP_05649175.1| serine/alanine racemase [Enterococcus gallinarum EG2]
 gi|20140922|sp|Q9X3P3|VANT_ENTGA RecName: Full=Serine/alanine racemase; AltName: Full=Vancomycin
           C-type resistance protein VanT
 gi|4545123|gb|AAD22403.1| serine racemase VanT [Enterococcus gallinarum]
 gi|257803686|gb|EEV32508.1| serine/alanine racemase [Enterococcus gallinarum EG2]
          Length = 698

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 172/364 (47%), Gaps = 31/364 (8%)

Query: 14  TALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72
           TAL +N   +   +S   +  AVVK +AYG G +++AP L  AG+  F V +++EG++LR
Sbjct: 347 TALLHNLQEIQRIISPKTKVMAVVKADAYGCGAKEVAPVLEQAGIDFFAVATIDEGIRLR 406

Query: 73  LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGF 132
               ++ I VL    P + K +   +L   I S       S+       H   L +DTG 
Sbjct: 407 KNAVKSPILVLGYTSPKRIKELRRYSLTQSIISEGHAVALSQRKVAIDCH---LAIDTGM 463

Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSV-QLERFRTLISHY 189
           +RLG++    +D   + F+     +S + SHL  AD  +P S + +  Q+  F  ++   
Sbjct: 464 HRLGVT--PTIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQIACFDQILLEL 521

Query: 190 KGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEA 240
              + S     L SS GIL  P+ ++   RPGI L G     N+       +Q ++T +A
Sbjct: 522 DQRQISYGITHLQSSYGILNYPDLNYDYVRPGILLTGSLSDTNEPTKQRVSLQPILTLKA 581

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I  R    GE + YG      +++ + V +IGY DG P +LS  + E   S       
Sbjct: 582 QLITKRVVAKGEAIGYGQTAVANQETTVGVVSIGYCDGLPRSLS--NQEFCLSY------ 633

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
             +G  +P +G I MDM + D++   +I +   I+I        D A    T   +L+ R
Sbjct: 634 --RGQSLPQIGLICMDMLLIDLSHCPTIPIESEIEILT---DWSDTAEQVQTITNELICR 688

Query: 361 IGTR 364
           IG R
Sbjct: 689 IGPR 692


>gi|295090179|emb|CBK76286.1| alanine racemase [Clostridium cf. saccharolyticum K10]
          Length = 710

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 161/348 (46%), Gaps = 30/348 (8%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF 95
           VK NAYG G   IA AL   G++ F V SV EGV+LR       I +L   HP    +++
Sbjct: 374 VKANAYGHGAVLIAKALQEKGIRAFCVASVTEGVELRKNGITGTILILGYTHPDSFPLLW 433

Query: 96  DTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155
              L   +   P   +   L +C       L++DTG +RLG+   + ++     F     
Sbjct: 434 KYRLTQTVVDYP---YAQSLNACRKKVQVHLKIDTGMHRLGIR-SDHIEEISRMFQMDNL 489

Query: 156 QLSLIISHLACADDPSS---HVNSVQLERFRTLISHY--KGIEAS---LASSSGILLGPN 207
            +  I +HL  +D  ++        Q   F TL+     +GI      L++S G++  P 
Sbjct: 490 LVDGIYTHLCVSDSMTAADREFTYQQANAFYTLLEKLSERGISCPNIHLSASYGLIHYPE 549

Query: 208 YHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
           +     R GI+LYG      D+ N S P+  V++ +AR+  +R    GE   YG +    
Sbjct: 550 FPSNYARIGIALYGMLSSRQDEENCSIPLFPVLSVKARVSSVRDLYKGEGAGYGLRYVAK 609

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
            +  IAV +IGYADG P +LS   + H       G+  I G   PI+G I MD  + D+T
Sbjct: 610 ENRQIAVLSIGYADGIPRSLS---NGH-------GRVLINGQFAPIIGNICMDQMLVDVT 659

Query: 324 DSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAK 367
           D   ++ GD   + G     +I   D+A  + +   ++L R+G R  +
Sbjct: 660 DIKEVKQGDIAVLIGKSGDLEITAYDLAEQTESITNEILSRLGARLER 707


>gi|331091068|ref|ZP_08339910.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405290|gb|EGG84826.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 388

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 185/389 (47%), Gaps = 53/389 (13%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
           KIDL A+  N   M   + G+ +  AV+K + YG G  ++A  L     +  F V +++E
Sbjct: 10  KIDLDAVTYNMEQMKQRIDGDTKIMAVIKSDGYGHGAIQVAEVLEKYDYIWGFAVATLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
            V LR    Q  I VL  I P Q   + D ++        ++  Y++ M+  +S+     
Sbjct: 70  AVVLRTEGIQKPILVLGCIFPDQYLEMLDNDI--------RMNVYTEEMAKEISYMARRE 121

Query: 126 -------LQVDTGFNRLGLSLQ-EALD-FTHNSFNKKLGQLSL--IISHLACADDPSSHV 174
                  +++DTG  RLG ++  E++D  T  S   KL  +++  + +H A AD+     
Sbjct: 122 GKTAYLHIKLDTGMARLGFAVNNESVDAITRIS---KLPNVNMEGVFTHFAKADETDKTF 178

Query: 175 NSVQLERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
              Q+ +F ++      +G+       A+S+ I+   +  F + R GIS YG   ++++N
Sbjct: 179 TKNQISQFVSMTEKLRERGVTFPYEHCANSAAIIDVEDARFDIVRAGISTYGLYPSEEVN 238

Query: 228 KSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           ++   ++  +  ++ +  +++   G  VSYGG     +   IA   +GY DGYP +LS  
Sbjct: 239 QNAVHLKPALALKSHVAFVKEIEEGTPVSYGGTFVAEKKMKIATIPVGYGDGYPRSLS-- 296

Query: 287 DSEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                      GKG+  I+G    ILG+I MD  M D+TD   +  GD + + G D    
Sbjct: 297 -----------GKGYVLIRGKKANILGRICMDQFMVDVTDIEGVSFGDKVTLIGRDGNEA 345

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I ++ ++  SG  NY+ +  +G R  + Y
Sbjct: 346 ISVEKLSELSGRFNYEFICALGKRIPRVY 374


>gi|311896524|dbj|BAJ28932.1| putative alanine racemase [Kitasatospora setae KM-6054]
          Length = 394

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 169/379 (44%), Gaps = 32/379 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL AL++N  ++ A +  A   AVVK +AYG G  + A     AG       + EE + 
Sbjct: 22  VDLAALRDNLAALRARTSGAELMAVVKADAYGHGALRCAREAVAAGAGWLGTATPEEALA 81

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
           LR   +   QARI        G        ++   IS    L    + +   GV     L
Sbjct: 82  LRAAGIGPEQARILCWLWTPGGPWARALRESVDISISGQWALDELLAAVRETGVPARVHL 141

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +  D   N+   +   L  ++   SH A AD+P       QL+ F 
Sbjct: 142 KADTGLGRNGCQPHDWPDLVENAVKAQAAGLLRVVGVWSHFAAADEPGHPSIQAQLDSFA 201

Query: 184 TLI--SHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQT 234
             +  +   G++     LA+S   LL P  H+ L RPG+++YG +   +   P    ++ 
Sbjct: 202 QALAFAERTGVDPEVRHLANSPATLLLPQSHYDLVRPGLAMYGLSPVPDVGAPADFGLRP 261

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  AR+ L+++   G  +SYG     +  + + +  +GYADG P   S     ++  V
Sbjct: 262 VMSLAARLALVKRVPGGHGISYGHHYTTSGPTTLGLVPLGYADGVPRHAS-----NTGPV 316

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
            +G   +       + G++ MD  + D+   L  +VG+ + +FG     +   +D A A 
Sbjct: 317 QIGSSWYR------VAGRVAMDQFVVDLGGDLP-DVGEEVLLFGSGERGEPTAEDWARAC 369

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT  Y+++ RIG R  + Y
Sbjct: 370 GTIAYEIITRIGGRVPRRY 388


>gi|289209091|ref|YP_003461157.1| alanine racemase [Thioalkalivibrio sp. K90mix]
 gi|288944722|gb|ADC72421.1| alanine racemase [Thioalkalivibrio sp. K90mix]
          Length = 367

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 169/372 (45%), Gaps = 32/372 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++   AL++N      L+      +V+K   YG G    A AL +       V+ V E 
Sbjct: 7   IQLHPEALRHNLSVARRLAPAVPMWSVIKAEGYGHGLLWAAQALADDS-DGLAVSQVCEA 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
             LR    +  + VL G     E     + +L PV+    QL     L +  V  P   +
Sbjct: 66  RALRAAGFEGALLVLQGPRDLSEVHACTEFDLQPVLHHSAQL---DHLEAASVVLPVVWI 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTL 185
           +++TG NRLG    +A            GQ  L  ++H+ACAD+P    N+ QL+ F T 
Sbjct: 123 KLNTGMNRLGFEPAQAPKVATRLQAAGHGQGGLHWMTHMACADEPEHPQNARQLDAFATT 182

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLT-----RPGISLYGG-TDKINKSH-------PM 232
           ++ + G   S+A+S+ +  G             RPGI LYG     +   H        +
Sbjct: 183 VAAFPG-HRSVANSAALFAGWGRGGAAAGEYWGRPGIMLYGAHPASVPAEHLPEGPDGDL 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T +A II  +    G  V YG          + + A+GYADGYP         H+P
Sbjct: 242 RPAMTVQAPIIATQPLAPGSTVGYGATWTADAPGRVGIVAMGYADGYP--------RHAP 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
           S   G    + G + P++G+++MDM   D++   + +VGD + ++G  + ++ VA A+GT
Sbjct: 294 S---GTPVLVNGELCPLIGRVSMDMLAVDLSGVPAAQVGDRVTLWGEGLPVERVARAAGT 350

Query: 353 TNYDLLVRIGTR 364
            +Y+LL R+  R
Sbjct: 351 ISYELLTRVADR 362


>gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Chitinophaga pinensis DSM 2588]
 gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588]
          Length = 834

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 171/372 (45%), Gaps = 24/372 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L+A+ +N     +L     +  A+VK  +YG G  +IA  L   GV    V   +E
Sbjct: 473 LEINLSAVTHNVKQYQSLLKPGTKLMAMVKAFSYGSGSFEIANLLQFHGVDYLAVAYADE 532

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVS-HPYA 125
           GV LR       I V+    P     I   NL P I S+  L  F  ++   G +  P  
Sbjct: 533 GVDLRRTGITMPIMVM-NPEPSSFDAILQWNLEPEIYSLHLLKQFEEEVQLAGKTGFPVH 591

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +RLG   ++  +      +    +++ + SHLA ++DP+    + Q  +    
Sbjct: 592 IKLDTGMHRLGFEKKDIPELARLLSDNIYLKVNSVFSHLAASEDPAMDAFTKQQGQLFFE 651

Query: 186 ISH-------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVT 237
           +SH       Y  I   +A+S+ I   P+    + R GI +YG  D  NK    ++   T
Sbjct: 652 MSHELQKALGYTVIR-HIANSAAIERHPDLQLDMVRLGIGMYG-IDSANKIQDQLRPAST 709

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  +  ++    G+ V YG +      S+ A   IGYADGYP  LS             
Sbjct: 710 LKTTVAQVKHLSTGDTVGYGAKWVAKGPSVTATVRIGYADGYPRRLSNGK---------- 759

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           GK  ++G + P+ G + MDM M D+T+   +  GD + +FG ++ +  V+  + T  Y++
Sbjct: 760 GKMLVRGQLAPVAGVVAMDMLMLDVTNIPEVAEGDEVIVFGNELPVQQVSAWADTIPYEI 819

Query: 358 LVRIGTRYAKFY 369
           L  I  R  + Y
Sbjct: 820 LTGISQRVKRVY 831


>gi|29831510|ref|NP_826144.1| alanine racemase [Streptomyces avermitilis MA-4680]
 gi|29608626|dbj|BAC72679.1| putative alanine racemase [Streptomyces avermitilis MA-4680]
          Length = 391

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 167/379 (44%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N  ++ A +  A   AVVK +AYG G    A A   AG       + EE
Sbjct: 12  RAEIDLAALRANVRTLRAHAPAAALMAVVKSDAYGHGAIPCARAAVEAGATWLGTATPEE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR      RI     +  G  +   D ++   +S +  L          G      L
Sbjct: 72  ALALRAAGLPGRIMCWLWVPGGPWREAIDADIDLGVSGLWALREVVEAAAGAGAPARVQL 131

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G   ++       +   +   L +++ + SHLACAD+P       QL  FR
Sbjct: 132 KADTGLGRNGCQPEDWPGLVAEALRAEAAGLVRVTGLWSHLACADEPGHPSIEAQLALFR 191

Query: 184 TLISH--YKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQT 234
            ++++   +G+      +A+S   L  P+ HF L R GI++YG +       P    ++ 
Sbjct: 192 QMVAYAERQGVRPEVRHIANSPATLTLPDSHFDLVRTGIAVYGISPSPELGVPADFGLRP 251

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A + L++    G  VSYG        + + +  +GYADG P   SG     S  V
Sbjct: 252 VMTLAASLALVKHVPGGHGVSYGHHYVTPGATTLGLVPVGYADGIPRHASG-----SGPV 306

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
            +GGK         + G+I MD  + D+        G    +FGP    +   +D A A+
Sbjct: 307 LIGGKWRT------VAGRIAMDQFVVDLGGD-EPGAGAEAVLFGPGDRGEPTAEDWAKAA 359

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT  Y+++ RIGTR  + Y
Sbjct: 360 GTIAYEIVTRIGTRVPRVY 378


>gi|206900696|ref|YP_002251207.1| alanine racemase [Dictyoglomus thermophilum H-6-12]
 gi|206739799|gb|ACI18857.1| alanine racemase [Dictyoglomus thermophilum H-6-12]
          Length = 378

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 165/364 (45%), Gaps = 28/364 (7%)

Query: 10  KIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           +IDL+AL NN   +    G      AVVK +AYG G + ++  L   A V  F V  ++E
Sbjct: 9   EIDLSALLNNIKVIREKIGKKVDIIAVVKADAYGHGAKIVSLFLQKYANVNSFAVAHIDE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           G+ LR      +I VL            +  L PVIS +  L    K   S G      L
Sbjct: 69  GIFLRKIGITKKILVLSPQLKSSIPYYLEYQLTPVISDIEFLEDLGKFSHSKGKELKIHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFRTL 185
             DTG  R GL L   +D   N   K  G  L  I SHL+ +++     N  Q + F  +
Sbjct: 129 MFDTGMGREGL-LPSEVDKVLNVMEKYPGLILEGISSHLSNSENKKDPYNIFQKKLFYEI 187

Query: 186 ISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
              +K  E     +++ GI   P +HF   RPGISLYG  DK      ++ V+  +A+I 
Sbjct: 188 YDKFKDEELVFHFSNTGGIFNFPEFHFNAVRPGISLYGYGDK-----ALKPVMEVKAKIT 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           LI+    G  + YG      +++ IA+  +GYADGY   LS             G+  + 
Sbjct: 243 LIKDLPEGWGIGYGHTFMTEKNTKIALVPLGYADGYRRDLSN-----------KGRVILN 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLV 359
           G    I+G+I+MD    D+TD    + GD + I G +    I   ++A+ S T  Y++L 
Sbjct: 292 GEYCKIVGRISMDQFTIDVTDK-EAKKGDVVTILGMEKDKIIDAQELAIISNTIPYEILT 350

Query: 360 RIGT 363
             G+
Sbjct: 351 GFGS 354


>gi|326792091|ref|YP_004309912.1| alanine racemase [Clostridium lentocellum DSM 5427]
 gi|326542855|gb|ADZ84714.1| alanine racemase [Clostridium lentocellum DSM 5427]
          Length = 377

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 178/384 (46%), Gaps = 44/384 (11%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+++N+  +   +  +    A+VK + YG G +++A  L   GV  F V  V EG
Sbjct: 11  EVNLGAIEHNYKQIRQHIPNHTEIMAIVKADGYGHGAKEVANFLQEQGVNRFAVAIVAEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            +LR     + I VL G  P  + K + + +L   + S     T   +    G +    L
Sbjct: 71  EELRSSGITSPILVL-GYTPRADIKTLIENDLTQTVFSYEMAKTISDEAGRLGKTVNIHL 129

Query: 127 QVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQL 179
           +VDTG  R+G      S++E L  T      KL  ++L  I +H + AD+  +     Q 
Sbjct: 130 KVDTGMGRIGFLSSPKSIEEILMIT------KLPHINLEGIFTHFSTADEEDTSYTKEQW 183

Query: 180 ERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHP 231
             F   +      G+E  +   A+S+ I+     H  L RPGI LYG         K   
Sbjct: 184 SIFEGFLKELSEVGLELPIIHAANSAAIMCHEYTHLNLVRPGIILYGYYPSPYLGGKVLD 243

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T + +++ +++   G+ V YG +    + + IA   +GYADGY            
Sbjct: 244 LEPAMTLKTQVVHVKELPEGQYVGYGRKFYTHQKTKIATIPVGYADGY------------ 291

Query: 292 PSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
            S  LG KG   I+G   PI+G I MD  M D+T    + V D + +FG      I +++
Sbjct: 292 -SRNLGNKGRVLIRGQYAPIIGNICMDQFMVDVTHIKGVSVEDEVVLFGKQQDAVIPVEE 350

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A + GT NY+++  IG R  + Y
Sbjct: 351 IAQSLGTINYEIVCMIGKRVPRIY 374


>gi|255323995|ref|ZP_05365121.1| alanine racemase [Corynebacterium tuberculostearicum SK141]
 gi|255299175|gb|EET78466.1| alanine racemase [Corynebacterium tuberculostearicum SK141]
          Length = 368

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 170/377 (45%), Gaps = 32/377 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            L+  IDL+A+ +N   +    G   +   VVK +AYG G  K+ P +  AG   F V +
Sbjct: 4   MLKTTIDLSAIAHNVRLIKEKVGPEVKLMCVVKADAYGHGAAKVVPVMARAGADCFGVAT 63

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHP 123
           + E V LR     A I         Q   I +  L   I  +V  L    KL+       
Sbjct: 64  LREAVNLRRAGVDAPIVAWIW----QTDEILEEALANGIEVAVNSLEQAHKLVKADFPAE 119

Query: 124 YALQVDTGFNRLGLS---LQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQL 179
             ++V+TG +R G+      E      ++ + K LG    ++SH ACAD+P +  N  Q 
Sbjct: 120 VYVKVETGMHRSGVDEGDWAETFKVLRDAPHIKVLG----LMSHFACADEPDNPHNDAQE 175

Query: 180 ERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           E FRT +   +  G+E     LA+S  +L  P+ +F+  R G + YG      + H ++ 
Sbjct: 176 EAFRTALQLAREIGLECPVNHLANSPAVLTRPSSYFEQVRVGAACYGLEPIEGREHGLRP 235

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T   +I  ++   AGE   YG   K  +   +A    GYADG P    G        +
Sbjct: 236 AMTWSGQIFNVKPIQAGEGTCYGLTWKADKPGFLATVDCGYADGLPRGYQG-------DL 288

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGT 352
            +G    I G++ P +G+I MD  + D+ ++   ++ G    IFG   +   D+A A+GT
Sbjct: 289 HVG----IGGHLYPQVGRICMDQIVVDLGENPHGVDTGQDAVIFGNGGVSATDLAAAAGT 344

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++     R  + Y
Sbjct: 345 INYEVVCLPDGRTEREY 361


>gi|323490569|ref|ZP_08095775.1| alanine racemase [Planococcus donghaensis MPA1U2]
 gi|323395835|gb|EGA88675.1| alanine racemase [Planococcus donghaensis MPA1U2]
          Length = 385

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 175/377 (46%), Gaps = 40/377 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDLTA+K+N       SG+A   AVVK +AYG G  ++   +   GV+   V + +E + 
Sbjct: 12  IDLTAIKSNLTYFQEKSGDAEVIAVVKADAYGHGVLEVVKTVVAHGVRMLAVATPDEALF 71

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQV 128
           LR       + VL         I    N+I    S+  L+  ++ +    S P    L+V
Sbjct: 72  LRNQGIDTELLVLGATSSQFIPIAQQHNIIVTAISLDWLSMAARHIEQN-SDPLKIHLKV 130

Query: 129 DTGFNRLGL---SLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           DTG  R+G+    ++EA  F   + F+ K      I +H A AD+  S + S Q+    T
Sbjct: 131 DTGMRRIGVQVDEVEEAFGFIADHDFDFKG-----IFTHFATADEKDSPLFSQQVNAMNT 185

Query: 185 LISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTVV 236
           ++       ++  +++S+  ++ P+      R GISLYG        +++N    +Q  +
Sbjct: 186 ILDKLDDPSVKVHISNSAAAIMHPDLACDAVRIGISLYGIAPSPYVGEEMN--FDLQPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E  +I ++K  AGE +SYG   +  +D  IA   IGYADG    L G D         
Sbjct: 244 SLETEMIHVKKLKAGETLSYGATYRAEKDEWIATIPIGYADGMLRGLQGQDV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
                +KG  VPI+G+I MD  M  +++  SI  G+ +Q+ G      I +D+ A    T
Sbjct: 296 ----LVKGQRVPIIGRICMDQCMIRLSEKSSI--GEKVQLIGRQGNQQILIDEWAAKLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++   +  R  + Y
Sbjct: 350 IPYEIPCILTKRVPRVY 366


>gi|89889690|ref|ZP_01201201.1| alanine racemase [Flavobacteria bacterium BBFL7]
 gi|89517963|gb|EAS20619.1| alanine racemase [Flavobacteria bacterium BBFL7]
          Length = 367

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 178/376 (47%), Gaps = 31/376 (8%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+++L AL++N+H + + L    +  AVVK NAYG G   IA  L    V  F V  V 
Sbjct: 7   RLEVNLAALEHNFHYLKSKLQSGVKFMAVVKANAYGHGAVAIAHRLQELDVDYFAVAYVS 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHPY 124
           E V+LR    +  I VL+           +  + PVI S+  L  +  +       ++P 
Sbjct: 67  EAVELRNNGIKKPILVLHA-QAFTLNTCIERCIEPVIYSIEMLDAFIAIAQDKQQSAYPI 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFR 183
            L+ +TG NR+G+  ++  +      +    ++  + SHLA ++D +     + Q+E F+
Sbjct: 126 HLEFNTGLNRIGIDFKDIDEVISKVTSNSSIKVRGLQSHLAASEDLNELDFTNSQIELFK 185

Query: 184 TLISHYKGIEASL--------ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            + +    +E +L        +++SGIL   + HF + R GI LYG  +       ++ V
Sbjct: 186 EINAR---LEKALPYPFLKHESNTSGILNYKDAHFSMVRSGIGLYGFGNDHTFDKQLKPV 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            + ++ I   R   AGE VSY  +    + +  AV A+G+ DG               ++
Sbjct: 243 ASLKSVISQTRWIEAGESVSYNRKFIAQKRTQYAVIALGHGDGI------------NRIY 290

Query: 296 LGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
             GK    I G + P LG I MDM M DIT+ +   VGD + IF  +    ++A  +GT 
Sbjct: 291 GYGKAQVSINGKLAPTLGIICMDMFMVDITN-IDCYVGDEVIIFNQEFTAREMAEKAGTI 349

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++L  I  R  + Y
Sbjct: 350 SYEILTGIQKRVPRIY 365


>gi|302536293|ref|ZP_07288635.1| alanine racemase [Streptomyces sp. C]
 gi|302445188|gb|EFL17004.1| alanine racemase [Streptomyces sp. C]
          Length = 378

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 171/377 (45%), Gaps = 29/377 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A+++N  ++ A +  A   A+VK NAYG G  + A A   AG       + EE +
Sbjct: 11  EIDLDAVRDNVRALRARAPRAELMAIVKSNAYGHGAVQCARAAQEAGAGWLGTATPEEAL 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQV 128
            LR    + RI        G  +   + +L   +S +  L    +   + G      L+ 
Sbjct: 71  ALRDAGIRGRIMCWLWTPGGPWREAVEADLDVSVSGMWALDEVRAAARAAGRPARIQLKA 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G    +  +    +   +     +++ + SH ACAD+P      +QL+ FR +
Sbjct: 131 DTGLGRNGCQPADWAELVGAAVAAQAEGTVRVTGVWSHFACADEPGHPSIRLQLDAFRDM 190

Query: 186 ISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVV 236
           +++   +G++     +A+S   L  P  HF L R GI++YG +       P Q      +
Sbjct: 191 LAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGIAVYGVSPSPELGTPAQLGLRPAM 250

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +A + L++   AG  VSYG       ++ +A+   GYADG P   SG           
Sbjct: 251 TLKASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGR---------- 300

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
            G   + G +    G+I MD  + D+ + L+ E GD   IFG     +   +D A A+GT
Sbjct: 301 -GPVLVAGKVRRAAGRIAMDQFVVDLGEDLA-EAGDEAVIFGDAERGEPTAEDWAQAAGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y+++ RIG R  + Y
Sbjct: 359 IAYEIVTRIGGRVPRVY 375


>gi|291538997|emb|CBL12108.1| alanine racemase [Roseburia intestinalis XB6B4]
          Length = 389

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 183/398 (45%), Gaps = 57/398 (14%)

Query: 4   NEFLRL--KIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAG- 56
           N + R+  +IDL A+    H+M+A+ GN     +  AV+K + YG G  +IA  +     
Sbjct: 2   NRYSRVHAEIDLDAI---LHNMDAMRGNIAKDTKIMAVIKADGYGHGAVEIAETIEKLDY 58

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KL 115
           +  + V +VEEG+ LR +  Q  I +L  + P Q   +    + P + +       S   
Sbjct: 59  LYGYAVATVEEGLILRNHGIQKPILILGYVFPDQYVDMIKAGIRPTVFTREMAEKLSVAA 118

Query: 116 MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSL--------IISHLAC 166
            S G        +DTG +R+G  + +EA D        ++ QLS         I +H A 
Sbjct: 119 ASIGRDCKIHFAIDTGMSRIGYQVTEEATD--------EMAQLSKLPHIIVEGIFTHFAK 170

Query: 167 ADDPSSHVNSVQLERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG 221
           AD+        Q++ FR +I     +G+   +   ++S+GI+  P  +  + R GI+LYG
Sbjct: 171 ADEKDKEPTYQQIKLFRKMIDMLEERGVSIPIHHCSNSAGIVDIPEANMDMVRAGITLYG 230

Query: 222 --GTDKINKS----HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275
              ++ ++K+     P  ++VT    +  +++  AG  +SYGG        +IA   +GY
Sbjct: 231 MWPSEDVDKTAISLKPALSLVT---HVAYVKELPAGRAISYGGTYVTKEPRMIATIPVGY 287

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335
           ADGY   LS             G   I G   PILG++ MD  M D+TD   ++  D + 
Sbjct: 288 ADGYARGLSN-----------KGAVLIHGRRAPILGRVCMDQFMVDVTDIPDVKNEDEVI 336

Query: 336 IFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + G D    I +++V   SG  NY+    +G R  + Y
Sbjct: 337 LIGRDGDECITMEEVGGLSGRFNYEFACDLGKRIPRVY 374


>gi|190572625|ref|YP_001970470.1| alanine racemase [Stenotrophomonas maltophilia K279a]
 gi|190010547|emb|CAQ44156.1| putative alanine racemase [Stenotrophomonas maltophilia K279a]
          Length = 355

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 175/377 (46%), Gaps = 40/377 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L G  +  A++K +AYG G  + A AL       F V ++EE
Sbjct: 5   RALIDLGALRSNYRLARELGGG-KALAIIKADAYGHGAVRCAQAL-EGEADGFGVATIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A I +L GI    +  ++ + +    + S  QL   +   S     P   
Sbjct: 63  ALELRQAGIRAPILLLEGIFELSDMALVAEHDFWFAVGSPWQLEAVAAFDS---PRPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--------LIISHLACADDPSSHVNS 176
            L++D+G +RLGL +        +SF     +LS        ++++HLA AD+  S    
Sbjct: 120 WLKLDSGMHRLGLDV--------DSFRAAHARLSALPEVERIVLMTHLARADELDSERTH 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQ 233
            Q   F   I    G E S+ +S  +L  P+      RPG+ LYG     D    +  ++
Sbjct: 172 EQAATFARAIDGLHG-ETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDNTLTERLR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T ++++I  R   AGE V YG +      + + V A+GYADGYP        + +P+
Sbjct: 231 PVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYP--------QFAPN 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    I G    ++G+++MDM   D+T      VG  ++++G    L ++A   G +
Sbjct: 283 ---GTPVLIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVS 339

Query: 354 NYDLLVRIGTRYAKFYT 370
            Y L   +  R AK Y 
Sbjct: 340 AYQLPCAV-KRVAKVYV 355


>gi|116329770|ref|YP_799489.1| alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332652|ref|YP_802369.1| alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122663|gb|ABJ80556.1| Alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116127519|gb|ABJ77611.1| Alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 379

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 173/383 (45%), Gaps = 38/383 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I   +L NN +S  + L   +   A++K NAYG G + +A      GV    V S+EE
Sbjct: 9   IEISKRSLSNNLNSFRSILRPGSTLTAILKSNAYGHGTDLMAKLCIEEGVSHIGVNSIEE 68

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
              +R   P+  I ++  I +P + K  + D N   + S        S L      H   
Sbjct: 69  AQSIRQIDPKIPILIMGEIQNPEKRKEALSDPNFWIIFSRPETARILSSLNPAPKLH--- 125

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS-VQLERFR- 183
           L++DTG  RLG +  E L +T     K    L  I +H A  +D   H  S +Q+++F  
Sbjct: 126 LKIDTGMGRLG-NHGETLKYTLGELKKNGITLDGICTHFASTEDVLEHKYSLMQIQKFEK 184

Query: 184 -TLISH---YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----------NKS 229
             L++    YK +   + +S+  +L  + H+++ R GISLYG    I          NK+
Sbjct: 185 AVLLAESLGYKNLIRHMCASASTMLFSSAHYEMVRVGISLYGLWPSIQTRLSLNLNGNKN 244

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +  +++ + RI+ I+   A   + YG   + +  + +A+  IGY +G    LS     
Sbjct: 245 FQLSPILSWKTRIVHIQNHPADSYIGYGSTFQTSYPTKVAIVPIGYYEGLDRKLSS---- 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   + G    I+G+I M+MTM D+T     +VG  + + G D    I  DD
Sbjct: 301 -------NGDMLVLGKRARIIGRICMNMTMLDVTHISGADVGSVVTVIGQDGEELITADD 353

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
           +A  + T NY++  RI     + 
Sbjct: 354 IADRTHTINYEITTRISESVCRI 376


>gi|67479937|gb|AAY67970.1| serine racemase [Enterococcus gallinarum]
          Length = 698

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 172/364 (47%), Gaps = 31/364 (8%)

Query: 14  TALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72
           TAL +N   +   +S   +  AVVK +AYG G +++AP L  AG+  F V +++EG++LR
Sbjct: 347 TALLHNLQEIQRIISPKTKVMAVVKADAYGCGAKEVAPVLEQAGIDFFAVATIDEGIQLR 406

Query: 73  LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGF 132
               ++ I VL    P + K +   +L   I S       S+       H   L +DTG 
Sbjct: 407 KNAVKSPILVLGYTSPKRIKELRRYSLTQSIISEGHAVALSQRKVAIDCH---LAIDTGM 463

Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSV-QLERFRTLISHY 189
           +RLG++    +D   + F+     +S + SHL  AD  +P S + +  Q+  F  ++   
Sbjct: 464 HRLGVT--PTIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQIACFDQILLEL 521

Query: 190 KGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEA 240
              + S     L SS GIL  P+ ++   RPGI L G     N+       +Q ++T +A
Sbjct: 522 DQRQISYGITHLQSSYGILNYPDLNYDYVRPGILLTGSLSDTNEPTKQRVSLQPILTLKA 581

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I  R    GE + YG      +++ + V +IGY DG P +LS  + E   S       
Sbjct: 582 QLITKRVVAKGEAIGYGQTAVANQETTVGVVSIGYCDGLPRSLS--NQEFCLSY------ 633

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
             +G  +P +G I MDM + D++   +I +   I+I        D A    T   +L+ R
Sbjct: 634 --RGQSLPQIGLICMDMLLIDLSHCPTIPIESEIEILT---DWSDTAEQVQTITNELICR 688

Query: 361 IGTR 364
           IG R
Sbjct: 689 IGPR 692


>gi|206603563|gb|EDZ40043.1| Alanine racemase [Leptospirillum sp. Group II '5-way CG']
          Length = 406

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 173/391 (44%), Gaps = 44/391 (11%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL +DL AL NN   + + L  +     VVK +AYG G   +A      GV    V  +E
Sbjct: 22  RLIVDLDALSNNLEWIRSRLPSSIEILPVVKADAYGHGMLPVAKNFVEMGVPALGVMGLE 81

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV+LR     A++ V+ GI P + +      L PVI +   L     L      H + L
Sbjct: 82  EGVRLRKAEISAKVIVMGGILPSELEECISCGLTPVIHNCELLEAALDLARKMEVHIH-L 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQL------ 179
           + D G  RLG  L E + +  +    +   ++  ++SH    ++ S     + +      
Sbjct: 141 KFDVGMGRLGF-LPEDISWVCDKIEMEPSIRIEGVMSHFPEGENISETSRQIAIFGCMVD 199

Query: 180 ERFRTLISHYKGIEASLASSSGILLG------------PNYHFQLTRPGISLYGGTDKIN 227
           E +   + + +     LA+S+  L G              Y     RPGI LYG      
Sbjct: 200 ELWDRGVLYARPFVIHLANSAAFLSGQYSVADKKNRAWEKYARYWIRPGILLYGIPVDPL 259

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++  +  +AR+I ++    G  +SYGG   L+R + + V  +GYADG P  LS   
Sbjct: 260 PLPGLKPAMEIQARLISLKTLSEGSRISYGGTFSLSRKTRVGVLGMGYADGLPRELSNW- 318

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDV 346
                     G     G   P LG++ MDM M D+TD+ S + +GD++ + G     DD+
Sbjct: 319 ----------GWASRMGQKFPFLGRVCMDMVMVDVTDAESPVCLGDWMTVLG---NGDDL 365

Query: 347 ALASG-------TTNYDLLVRIGTRYAKFYT 370
           ++++        +  Y+++ R+G R  +FY+
Sbjct: 366 SMSAWEIAGRIRSIPYEIVCRMGNRSPRFYS 396


>gi|240147271|ref|ZP_04745872.1| alanine racemase [Roseburia intestinalis L1-82]
 gi|257200543|gb|EEU98827.1| alanine racemase [Roseburia intestinalis L1-82]
          Length = 389

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 183/398 (45%), Gaps = 57/398 (14%)

Query: 4   NEFLRL--KIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAG- 56
           N + R+  +IDL A+    H+M+A+ GN     +  AV+K + YG G  +IA  +     
Sbjct: 2   NRYSRVHAEIDLDAI---LHNMDAMRGNIAKDTKIMAVIKADGYGHGAVEIAETIEKLDY 58

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KL 115
           +  + V +VEEG+ LR +  Q  I +L  + P Q   +    + P + +       S   
Sbjct: 59  LYGYAVATVEEGLILRNHGIQKPILILGYVFPDQYVDMIKAGIRPTVFTREMAEKLSVAA 118

Query: 116 MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSL--------IISHLAC 166
            S G        +DTG +R+G  + +EA D        ++ QLS         I +H A 
Sbjct: 119 ASIGRDCKIHFAIDTGMSRIGYQVTEEAAD--------EMAQLSKLPHIIVEGIFTHFAK 170

Query: 167 ADDPSSHVNSVQLERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG 221
           AD+        Q++ FR +I     +G+   +   ++S+GI+  P  +  + R GI+LYG
Sbjct: 171 ADEKDKEPTYQQIKLFRKMIDMLEERGVSIPIHHCSNSAGIVDIPEANMDMVRAGITLYG 230

Query: 222 --GTDKINKS----HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275
              ++ ++K+     P  ++VT    +  +++  AG  +SYGG        +IA   +GY
Sbjct: 231 MWPSEDVDKTAISLKPALSLVT---HVAYVKELPAGRAISYGGTYVTKEPRMIATIPVGY 287

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335
           ADGY   LS             G   I G   PILG++ MD  M D+TD   ++  D + 
Sbjct: 288 ADGYARGLSN-----------KGAVLIHGRRAPILGRVCMDQFMVDVTDIPDVKNEDEVI 336

Query: 336 IFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + G D    I +++V   SG  NY+    +G R  + Y
Sbjct: 337 LIGRDGDECITMEEVGGLSGRFNYEFACDLGKRIPRVY 374


>gi|254247864|ref|ZP_04941185.1| Alanine racemase [Burkholderia cenocepacia PC184]
 gi|124872640|gb|EAY64356.1| Alanine racemase [Burkholderia cenocepacia PC184]
          Length = 356

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 164/362 (45%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++  AVVK NAYG G  +  P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG   ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYVPEKYRAAWERARACPGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEARI 242
               G   SLA+S+ +L  P+ HF   RPGI LYG +     S    T     +T  + +
Sbjct: 181 ESIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 AR 350


>gi|303234171|ref|ZP_07320817.1| alanine racemase [Finegoldia magna BVS033A4]
 gi|302494712|gb|EFL54472.1| alanine racemase [Finegoldia magna BVS033A4]
          Length = 391

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 180/394 (45%), Gaps = 58/394 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LK+DL  LK+N+  +  +S   +  AVVK NAYG G   I   L   G+  F V+++ E 
Sbjct: 8   LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67

Query: 69  VKLR---LYTPQARIFVL---------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           ++LR   ++ P   I +L           I    E  ++D +    I++V +    S   
Sbjct: 68  LELRKNGIFKP---IMILGYISNENIEVAIKNNIELTVYDYDTAVEINNVAK----SLNK 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSL--IISHLACADDPSS 172
            C V     +++DTG  RLG  ++   D       K  K+  + L  I SH + AD   S
Sbjct: 121 ICKVH----IKIDTGMTRLGFQVRLDHDKCLEEIFKIYKMDNVVLQGIYSHFSDAD---S 173

Query: 173 HVNSVQLERFRTLISHYKGIE--------ASLASSSGILLGPNYHFQLTRPGISLYG--G 222
              S   E++ T I     +E          +A+ +G ++   Y   + R GI LYG   
Sbjct: 174 EDYSYTKEQYNTYIGFMIDVENRGITVPIKHIANDAGAII-HGYFLDMIRCGIGLYGYHA 232

Query: 223 TDKI--NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           +D +  N    ++ + +    + +I+    G  + YG       ++++A A IGYADGYP
Sbjct: 233 SDYVRENSRLNLEEISSLYTTVSMIKTVPKGTDIGYGRTFTTNSETVVATATIGYADGYP 292

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
           L LS     +   V + GK         ILGK+ MD  M D+T    ++VGD + +FG D
Sbjct: 293 LELS-----NKAYVIINGKK------AKILGKVCMDQIMIDVTYIRDVKVGDKVLLFGKD 341

Query: 341 ----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
               I L ++A  + T  Y+LL R+  R  + YT
Sbjct: 342 DMGEISLYELAEMANTNVYELLCRVTMRIPRIYT 375


>gi|237746074|ref|ZP_04576554.1| alanine racemase [Oxalobacter formigenes HOxBLS]
 gi|229377425|gb|EEO27516.1| alanine racemase [Oxalobacter formigenes HOxBLS]
          Length = 359

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 170/370 (45%), Gaps = 42/370 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ A+++N   + +    A+  AVVK NAYG G E+   A  +A    F +  +E  + 
Sbjct: 9   IDIAAMQHNLSLVRSTVPRAKIWAVVKANAYGHGLERSVRAFSDA--DGFALIEIEAAIH 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKL---MSCGVSHPYAL 126
           LR    +  I +L G  +P +   +   N+   +    Q+    K    M   V     L
Sbjct: 67  LREIGWKKPILLLEGFFYPHELPTLARYNIAFAVHCDEQIDMLEKSRLDMPVDVH----L 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVNSV- 177
           +++TG NRLG        F  + + K L +L  I        ++H A ++     + SV 
Sbjct: 123 KMNTGMNRLG--------FLPSEYGKALERLKKIPNVRDISYMTHFANSEAKKHPLLSVK 174

Query: 178 -QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
            QL RF +     KG + +L++S  ILL P       RPGI LYGGT   K    + ++ 
Sbjct: 175 EQLRRFDSATQGLKG-DRNLSNSGAILLHPEIRTDWVRPGIMLYGGTPGGKTAAEYGLEP 233

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T  + II I+    G+ + YG            V A GYADGYP     +  E +P +
Sbjct: 234 AMTLSSEIIQIQHIREGDSIGYGSIFTAKGPMKTGVVACGYADGYPR----MAPEGTPIM 289

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
                  + G    ++G+++MDM   D+T      VG  + ++G ++ +D+VA A+GT  
Sbjct: 290 -------VDGVKTRLVGRVSMDMITVDLTPVPDAHVGSKVTLWGKELPIDEVAEAAGTVG 342

Query: 355 YDLLVRIGTR 364
           Y+L+  +  R
Sbjct: 343 YELMCALSLR 352


>gi|310778168|ref|YP_003966501.1| alanine racemase [Ilyobacter polytropus DSM 2926]
 gi|309747491|gb|ADO82153.1| alanine racemase [Ilyobacter polytropus DSM 2926]
          Length = 377

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 167/368 (45%), Gaps = 29/368 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L  L  N + +   +G+ +   V+K + YG+G  + A  L   GV++F V   EEG +
Sbjct: 7   INLDNLIYNLNIIKEFAGSKKIMCVIKADGYGMGAVECARILSENGVENFGVACYEEGYE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFD---TNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
           L     +  I +L G  P +   I D         ISS  Q+ F  +       HP   +
Sbjct: 67  LYKAGIKGEILLL-GATPFEN--IADAVKCGFQITISSFEQIDFLRR----NNLHPEVHI 119

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFRTL 185
           +VDTG  RLG S +EAL       ++ +  +  + SHL+ AD P     ++ Q+E+F+  
Sbjct: 120 KVDTGMGRLGFSHEEALKAIKIIRDENIADIVGVYSHLSVADMPEKDQFTLDQIEKFKVF 179

Query: 186 ISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEARII 243
                     + +SSG+L         L R GI L+G    +       + V + + +II
Sbjct: 180 EKMESIKYKHILNSSGLLRFADATESNLVRVGIILHGVVPFESELQKKFKPVFSFKTKII 239

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            + K      VSYG  +      LIA  A+GYADG+    S            GG   I 
Sbjct: 240 FLNKITEKTYVSYGNTETAEPGDLIATMAVGYADGFVREFSN-----------GGIVEID 288

Query: 304 GYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G    ++GKI MDMTM  I + L   ++VG  + I G DI     A   GT  Y++++ +
Sbjct: 289 GVGCRVIGKICMDMTMIKIPEELKDKVQVGTEVTIIGKDILKK--AECIGTIPYEIMIGL 346

Query: 362 GTRYAKFY 369
           G R A+FY
Sbjct: 347 GRRVARFY 354


>gi|295101040|emb|CBK98585.1| alanine racemase [Faecalibacterium prausnitzii L2-6]
          Length = 398

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 177/385 (45%), Gaps = 38/385 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL++N+ ++ A +G     AVVK ++YG G  + A      G     V+ + E  
Sbjct: 13  EIDLDALRHNFRAVKARAGEMPLCAVVKADSYGHGAVECAKVFAEEGAAWLAVSCLAEAR 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQV 128
           +LR       I +L  + P    ++   ++     S+PQ    S+   + GV     L+ 
Sbjct: 73  QLRKSGLTLPILILGHVEPSCAPVLIQEDITAACYSLPQAKALSEAACAAGVKVKVHLKA 132

Query: 129 DTGFNRLGLSLQEALDFTHNSF--NKKLGQLSL--IISHLACADDPSSHVNSVQLERFRT 184
           DTG  R+G +L+   D          +L  L +  +  H A ADD S+   +   ++   
Sbjct: 133 DTGMGRIGFALRTDFDAALAEMLDACRLPGLDVTGLFQHFAVADDDSADSVAYTSQQHEL 192

Query: 185 LISHYKGI-EASLA-------SSSGILLGPNYHFQL------TRPGISLYG--GTDKINK 228
            +   +G+ EA          +S+G++L P++   L       RPGI LYG   +D++ +
Sbjct: 193 FVRACQGLAEAGFEPAVVHCDNSAGVMLHPDWPAGLPRTHCMARPGIILYGFDPSDEV-R 251

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               + V+  +  + ++++   G+  SYG +    + + +A    GYADGYP  LS    
Sbjct: 252 FGIFRPVMKLKTIVSMVKEMQPGQSASYGRRFTAEKPTKVATLCAGYADGYPRLLS---- 307

Query: 289 EHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--KLD 344
                    GKG   IKG   P+LG++ MD  M D++    ++ GD   ++G ++    +
Sbjct: 308 --------CGKGIVEIKGMPCPVLGRVCMDQIMVDVSALPDVQEGDEAILWGGEVSDSAE 359

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            VA  + T +Y++L  +  R  + Y
Sbjct: 360 TVAHKTDTISYEVLCGVSRRVPRVY 384


>gi|253733096|ref|ZP_04867261.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728929|gb|EES97658.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 390

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 187/394 (47%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 10  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 70  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 124

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 125 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 179

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q +RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 180 ADEPGD-MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 238

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 239 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 297

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 298 RIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 343

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   +D VA    T NY++L  +  R  + Y
Sbjct: 344 RESPQ-SVDVVAEKQHTINYEVLCNLSRRLPRIY 376


>gi|17546090|ref|NP_519492.1| alanine racemase [Ralstonia solanacearum GMI1000]
 gi|20137209|sp|Q8XZM4|ALR_RALSO RecName: Full=Alanine racemase
 gi|17428386|emb|CAD15073.1| probable alanine racemase protein [Ralstonia solanacearum GMI1000]
          Length = 375

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 163/358 (45%), Gaps = 24/358 (6%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL NN   +   + ++R  AV+K NAYG G E+    L  A    F +  ++E V+LR  
Sbjct: 13  ALVNNLQVVRRHAADSRVWAVIKANAYGHGIERAYEGLRQA--DGFGLLDLDEAVRLRQL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
             Q  I +L G   P    ++    L   +    QL     L    +  P ++Q  ++TG
Sbjct: 71  GWQGPILLLEGFFKPEDLALVEQYRLTTTVHCEEQLRM---LELARLKGPVSIQLKINTG 127

Query: 132 FNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
            +RLG +       + H      +G + + ++H + AD P    +  QL  F        
Sbjct: 128 MSRLGFAPAAYRAAWEHARAISGIGTI-VHMTHFSDADGPRGIDH--QLAAFEQATQGLP 184

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIR 246
           G EASL++S+  L  P  H    RPG+ LYG    G     +   +   +T ++ +I ++
Sbjct: 185 G-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGVAADIEGTGLMPAMTLKSELIAVQ 243

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YG + +  +   I + A GYADGYP    G D  ++P         + G  
Sbjct: 244 DLQPGATVGYGSRFEAEQPMRIGIVACGYADGYPRHAPGWDGNYTPV-------LVDGVR 296

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             ++G+++MDM   D+ +     VG  + ++G  + +D+VA A+GT  Y+L+  +  R
Sbjct: 297 TRMVGRVSMDMITVDLAEVPGARVGAPVTLWGQGLPIDEVAHAAGTVGYELMCALAPR 354


>gi|189913008|ref|YP_001964897.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|189913337|ref|YP_001964566.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|167777684|gb|ABZ95984.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167781405|gb|ABZ99702.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 376

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 161/355 (45%), Gaps = 37/355 (10%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
            ++  AVVK NAYG G    A    +AG     V S+EE + +R    +A I ++  I  
Sbjct: 27  KSKFTAVVKSNAYGHGLLATASIALDAGADYLGVNSLEEALSIRRVFSKATILIMGSIPH 86

Query: 89  GQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146
            +E++  + D N   ++S + ++   +KL      H   L+VDTG +RLG+  Q A    
Sbjct: 87  LKERVAELADENFWVMVSRIEEMELLAKLSPTPKIH---LKVDTGMSRLGIPHQNAEVIA 143

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFRTLISHYK-----GIEASLASSS 200
                KKL  L+ I +H A  +D + H +S+ QL  F+  I  +       +    ASS+
Sbjct: 144 KEIAEKKL-PLTGIATHFASTEDFTEHSHSMLQLGNFQDTIDTFAKHGFIDLICHCASSA 202

Query: 201 GILLGPNYHFQLTRPGISLYGGTDKINKSHP----------MQTVVTAEARIILIRKALA 250
             +L       L R GISLYG    +               ++  +T + +I  I+    
Sbjct: 203 SAMLFSEARMDLVRVGISLYGLWPSLETKLSLSLMKKDVGMLKPALTWKTQIQHIQNLNP 262

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           G  V YG   K T ++ +AV  +GY +G    LS             G   + G    IL
Sbjct: 263 GTFVGYGSTFKTTHETRLAVVPVGYYEGLDRKLSN-----------HGYMLVHGERAKIL 311

Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRI 361
           G+I M+MTM DIT     ++GD + I G      I  DD A  +GT NY+++ +I
Sbjct: 312 GRICMNMTMLDITHIPDAKIGDDVVIIGKSGNEMISADDHATWTGTINYEVVTKI 366


>gi|315185426|gb|EFU19197.1| alanine racemase [Spirochaeta thermophila DSM 6578]
          Length = 388

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 168/380 (44%), Gaps = 39/380 (10%)

Query: 11  IDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L++N   +    G  R   A VK +AYG G  ++   L   GV+   V + EEG 
Sbjct: 8   IYLPHLRHNLREIRRRVGEGRMVCAAVKADAYGHGAVRVGRVLVEEGVEMLGVATPEEGA 67

Query: 70  KLRLYTPQARIFVL---------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           +L      AR+ +L           +  G E  + D   +  +  V +        + G 
Sbjct: 68  ELVEAGVGARVLLLGLTDGAGLELAVEAGVELAVGDREYVREVVRVAR--------AKGR 119

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                ++VDTG  R G + +EA+          + +L+ + +H   +D+        Q+E
Sbjct: 120 RVRVHVEVDTGMGRTGCAPEEAVGVVEEVEGAGVLELAGMWTHFPSSDEADDGFTEAQVE 179

Query: 181 RFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
           RF  ++   +  GI   L   A+S GI+  P     + RPGISLYG   +++  ++  + 
Sbjct: 180 RFLQVVGRVRARGISPGLLHAANSGGIIGHPPSWLDMVRPGISLYGYYPSEEQERTLSLL 239

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+   ++++ ++K   G  VSYG   +  RD+ IA  A GYADGY   LS         
Sbjct: 240 PVMEFVSQVVFLKKVRKGTPVSYGRTWRAPRDTWIATVAAGYADGYSRLLSSR------- 292

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---IKLDDVALAS 350
                +  I+G   P++G++ MD  M D+   L +   D + +FGPD      +++A   
Sbjct: 293 ----AEVLIRGRRYPVVGRVCMDQFMVDVGPHLEVARYDRVVLFGPDPAGPSAEELARLV 348

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           GT  Y++   +  R  + Y 
Sbjct: 349 GTIPYEITCAVSRRVPRVYV 368


>gi|221194906|ref|ZP_03567962.1| alanine racemase [Atopobium rimae ATCC 49626]
 gi|221184809|gb|EEE17200.1| alanine racemase [Atopobium rimae ATCC 49626]
          Length = 383

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 178/393 (45%), Gaps = 41/393 (10%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +N +   +I+L AL+ N  +  A L+   +  A+VK +AYG G    A AL + G   F 
Sbjct: 5   NNRWAWAEINLGALRRNAKAFKAQLARGVKFMAIVKADAYGHGAAACAKALRSVGADQFG 64

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVP-QLTFYSKLMSC 118
           V +V+EG+ LR    +  I VL    P  E I  +   +L+P +  +   L F     + 
Sbjct: 65  VATVDEGIALRQSGIEDPILVLN--QPPLESIDDLVTFDLMPSVYEIDFALGFGEASSAA 122

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G    Y L +D+G  R+G+  +EAL+      F++ L + +   +H A AD       ++
Sbjct: 123 GKVGKYHLAIDSGMTRIGVRREEALELRRAIDFHRGL-ECAGTFTHFATADLLDDWDFAL 181

Query: 178 QLERFRTLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           Q+ RF   +S  H  G+E  L    ++ G +L P+  F + R GI LYG    +      
Sbjct: 182 QVNRFTEAVSVIHEAGLETGLVHADNTPGTILHPDVQFDMCRIGIGLYGLHPAENTIPRI 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSG-LDS 288
            ++ V++   R+        G+ V YG   ++ R ++ +A   IGYADG    LS  +D 
Sbjct: 242 ALEPVMSVRGRVTRAIYPNVGDGVGYGLTWRVPRKNIQVATVPIGYADGLARCLSNRMDV 301

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMF--DITDSLS------IEVGDYIQIFGPD 340
                        + G     +G I MD  MF  DI  + S      +  GD + I G D
Sbjct: 302 ------------LVDGMRARQVGNICMDQFMFAVDINRARSYRPGYEVIEGDMVTIMGAD 349

Query: 341 ----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
               I  D++A   GT NY+++   G R  K Y
Sbjct: 350 GDEYISADEIAKLRGTINYEVVCDFGMRLDKVY 382


>gi|218288214|ref|ZP_03492513.1| alanine racemase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241573|gb|EED08746.1| alanine racemase [Alicyclobacillus acidocaldarius LAA1]
          Length = 400

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 163/349 (46%), Gaps = 44/349 (12%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL  L +N   + + L         VK +AYG G   +   L   GV+   V S+EE +
Sbjct: 9   IDLGHLSHNIRYLQSRLRPGTSLMVAVKADAYGHGVRAVVDRLAREGVRQVAVASIEEAL 68

Query: 70  KLRLYTPQARIFVLYGIHPGQ-------EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++R +     I VL  + P         E  I  T+L P I  +P+L    ++       
Sbjct: 69  EIRAFDRDVNILVLGAVTPDACMKAAEAEVEIALTDLSP-IDEIPRLPKRLRVH------ 121

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +DTG NRLG+    EA+        ++  +L    +HLA AD       + Q+ER
Sbjct: 122 ---LPLDTGMNRLGVKRTDEAVALARAIAAREDLELVGAGTHLAAADAEDPAHAAGQMER 178

Query: 182 FRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231
            +  +   + +EA+          +S+ +L  P++H  + R GI+ YG +    +  +  
Sbjct: 179 LKAFV---RALEAAGLRPPRIHAGNSAALLRDPDWHLDMVRVGIAAYGYSPDPSVLPAPS 235

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++  A ++ + +A AGE V YG    +TR  +IA  A GYADGYP  LS       
Sbjct: 236 LRPVMSLYAGVLRVAQAEAGETVGYGATFVVTRPMVIATVAGGYADGYPRHLSN------ 289

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                 G+  ++G + P++G++ MD  M D+T  L +  GD + +FG D
Sbjct: 290 -----EGEVLVRGELRPVIGRVCMDQLMVDVT-GLDVATGDVVALFGYD 332


>gi|154684967|ref|YP_001420128.1| hypothetical protein RBAM_004980 [Bacillus amyloliquefaciens FZB42]
 gi|154350818|gb|ABS72897.1| Alr [Bacillus amyloliquefaciens FZB42]
          Length = 389

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 173/384 (45%), Gaps = 30/384 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M++  F R    +I+L+A+K N  H    +  N    AVVK NAYG G  ++  A   AG
Sbjct: 1   MNTASFYRETWAEINLSAIKENVTHMKKHIGQNVHLMAVVKANAYGHGDLEVGKAALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL  + P   +   + ++     SV  L   ++ +
Sbjct: 61  ASCLAVAILDEAISLRKRGITAPILVLGAVPPEYVQAAAEYDVTLTGYSVEWLQEAARHL 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVN 175
               + P+ L+VDTG NRLG+  +E +       ++  G +   + +H A AD+ +    
Sbjct: 121 GSA-TVPFHLKVDTGMNRLGVKTEEEIQSVLKILSQNPGLVCKGVFTHFATADEKNRDYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
             Q +RF+TLI+    K +    A+S+  L      F   R GIS+YG   +  I    P
Sbjct: 180 LFQFDRFKTLIAPLPLKELMVHCANSAAGLRLKKGFFNAVRFGISMYGLRPSADIQSEIP 239

Query: 232 MQTVVTAEARIIL--IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            Q         +L  ++K   GE VSYG      +D  I    IGYADG+   LSG    
Sbjct: 240 FQLKPAFALHSVLSHVKKIRKGESVSYGATYTAEKDQWIGTVPIGYADGWLRKLSGT--- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
              SV +GGK       + I G+I MD  M ++  S     G  + + G      I +D+
Sbjct: 297 ---SVLIGGK------RMNIAGRICMDQLMVELDQSYP--PGTKVTLIGSQKEETITMDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY++   I +R  + +
Sbjct: 346 IAGRLGTINYEVPCTISSRVPRMF 369


>gi|242280765|ref|YP_002992894.1| alanine racemase [Desulfovibrio salexigens DSM 2638]
 gi|242123659|gb|ACS81355.1| alanine racemase [Desulfovibrio salexigens DSM 2638]
          Length = 382

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 174/380 (45%), Gaps = 33/380 (8%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++DL+A+ +N+  +  L +  ++  AVVK +AYG G  K+A  L  AG   F V  ++E 
Sbjct: 13  EVDLSAISHNFSEVQRLVNKQSKIMAVVKADAYGHGLTKVADCLNKAGADYFAVARLDEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR +  +  I +L    P     +    +I  V SS        KL     +    ++
Sbjct: 73  VALRNHGIEKPILILGYTPPEAATELLKHKVIQTVFSSEYAKDLNEKLNQTNKTLKVHIK 132

Query: 128 VDTGFNRLGL--SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           +DTG  RLGL     +       S   +L  L    + +H A +D+        QL++F+
Sbjct: 133 IDTGMGRLGLVDEFNDGAVLESISTINRLPNLETEGVYTHFAASDEADKTSALEQLKQFK 192

Query: 184 TLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQ 233
            +++    +GI   L   A+S+ I+  P  +F + RPGI LYG     G  + N    ++
Sbjct: 193 NILAGIERRGISIPLKHAANSAAIIDLPESYFDMVRPGIMLYGLYPSNGVHQQNAE--LR 250

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +  +ARI   ++  AG  +SYG        + +A   +GYADGY   LS         
Sbjct: 251 PAMQIKARIAQTKEVPAGFRISYGHTYTTPNATKLATIPLGYADGYRRQLSS-------- 302

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
               GK  + G    I+G++ MD ++ D+    ++E GD + I G     +I  + +A  
Sbjct: 303 ---AGKVLVHGQHASIVGRVCMDQSVIDVGKIENVEAGDEVVIIGRQEQAEISAERMACE 359

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  +  R  + +
Sbjct: 360 LGTINYEIVSTLMARVPRIF 379


>gi|118594787|ref|ZP_01552134.1| alanine racemase [Methylophilales bacterium HTCC2181]
 gi|118440565|gb|EAV47192.1| alanine racemase [Methylophilales bacterium HTCC2181]
          Length = 358

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 172/370 (46%), Gaps = 43/370 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+      A  +N   + + S N++  AV+K NAYG G  + A AL +A    F V ++ 
Sbjct: 4   LKASFHSAAFSSNLKRVKSYSPNSKVMAVLKANAYGHGLIEAARALNDA--DGFSVLTLS 61

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR +     + +L G   P + KI     +  VI    Q+ + +++        + 
Sbjct: 62  EAIELREHGFTQHLLLLEGFFKPYEVKICSLMGIGAVIHHAQQIDYINQVKPVKPIDVH- 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--------LIISHLACADDPSSHVNSV 177
           L+V+TG NRLG        F     +  L QL         +I++H + AD      +  
Sbjct: 121 LKVNTGMNRLG--------FMPKDVDLILKQLEESPYINKIVIMTHFSDADGEKGVAS-- 170

Query: 178 QLERFRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHP 231
           QL  F  +    KGI   E S+A+S+ I+  P  HF+  RPGI LYG +   DK      
Sbjct: 171 QLACFNEI----KGIDIYERSVANSAAIIKYPETHFEWVRPGIMLYGASPFDDKTGNDFQ 226

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++  + II I+     + V YG          + + A GYADGYP         H+
Sbjct: 227 LKPVMSLRSEIIAIQTLEESQSVGYGSVFTAPHKMTVGIVACGYADGYP--------RHA 278

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
           PS   G    + G +   +G+++MDM   D++   +  VG  ++++G  + +D+VA  S 
Sbjct: 279 PS---GTPLMVDGVITQTVGRVSMDMLYVDLSSLPNAGVGSSVELWGKGVLVDEVARQSH 335

Query: 352 TTNYDLLVRI 361
           T  Y+LL  I
Sbjct: 336 TVGYELLCAI 345


>gi|326802039|ref|YP_004319858.1| alanine racemase [Sphingobacterium sp. 21]
 gi|326552803|gb|ADZ81188.1| Alanine racemase [Sphingobacterium sp. 21]
          Length = 820

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 179/385 (46%), Gaps = 51/385 (13%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL++N +   +L     +   +VK  +YG G  +IA  L    V    V   +E
Sbjct: 460 LEINLNALEHNLNVYKSLLQQGTKLMVMVKAFSYGSGSFEIANLLQFNKVDYLTVAYADE 519

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQL-TFYSKLMSCGV-SHP 123
           G+ LR       I V+    PG++    + +  L P I S  +L  F SKL S  + ++P
Sbjct: 520 GIALRKSGITLPIVVM---SPGEDTFEQMIEYRLEPEIYSFSELEAFISKLPSEKMEAYP 576

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSHVN 175
             ++VDTG +RLG        F  +  ++ L +L          + SHLA A     H N
Sbjct: 577 VHIKVDTGMHRLG--------FEPDDVDRLLAKLKRTDKIVVKSVFSHLA-ASGIREHDN 627

Query: 176 --SVQLERF--------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225
             S Q+  F        R L  H+      +A++S I   P   F + R GI LYG +  
Sbjct: 628 FTSEQIRLFDVFTQDLARGLGYHFI---RHIANTSAISRFPQAQFDMVRLGIGLYGVSAD 684

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-S 284
             +S P+Q+V      I  ++   AG+ V Y    +L+ D  IA   IGYADGY     +
Sbjct: 685 EYRSLPLQSVTRLRTGITQVKYIKAGDTVGYNRNGRLSGDGTIATVKIGYADGYSRRFGN 744

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344
           G+           GK  IKG +VP +G I MDM M D+T  + ++ G+ + + G ++  +
Sbjct: 745 GV-----------GKMLIKGRLVPTVGDICMDMCMLDVT-GIDVKEGEEVLVMGEELSPE 792

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            +A A GT  Y++L  I  R  + Y
Sbjct: 793 TLAKAIGTIPYEILTSISQRVRRVY 817


>gi|302385985|ref|YP_003821807.1| alanine racemase [Clostridium saccharolyticum WM1]
 gi|302196613|gb|ADL04184.1| alanine racemase [Clostridium saccharolyticum WM1]
          Length = 395

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 182/377 (48%), Gaps = 33/377 (8%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL A+++N  +M A L    R   VVK + YG G   +A A+ +  V  + V +VEEGV
Sbjct: 11  VDLDAIRHNMEAMKANLKDGTRMIGVVKSDGYGHGAVPVAWAI-DPYVWGYAVATVEEGV 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---- 125
            LR +  +  I VL G+ P +   +   + I   S+V QL    +L S  V         
Sbjct: 70  ILRKHGIRKPILVL-GVVPYEGYGLLVEHGIS--SAVFQLKRAERLSSLAVREGKKAVIH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRT 184
           L +DTG +R+G  + E       +     G ++  + +H A AD+        QLE+++ 
Sbjct: 127 LVLDTGMSRIGYPVTEEAAKEAATICGLPGIEVEGLFTHFAKADERDKKATDHQLEQYQK 186

Query: 185 LISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINK-SHPMQTVV 236
            ++    +GI   +   ++S+GIL     +    R GIS+YG   + ++++ +  ++  +
Sbjct: 187 FVAMLADRGITIPMLHCSNSAGILDLQRANLHAVRAGISIYGIYPSGEVDRDTVKLRPAM 246

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             ++ I  ++K   G  VSYGG     R+  +A   +GY DGYP  LSG           
Sbjct: 247 ELKSFISYVKKIGPGTSVSYGGTFTADREMTVATVPVGYGDGYPRNLSG----------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G+  I+G    ILG++ MD  M D+T     E  D + + G     +I ++D+A+A G 
Sbjct: 296 KGEVLIRGQRARILGRVCMDQFMVDVTGIHEAEEEDEVVLIGRQGKEEITVEDLAMAGGG 355

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y+++  IG R  + Y
Sbjct: 356 FHYEIVCDIGKRVPRIY 372


>gi|326576906|gb|EGE26812.1| alanine racemase [Moraxella catarrhalis O35E]
          Length = 380

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 167/353 (47%), Gaps = 26/353 (7%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL----YTPQARIF 81
           L    +  A+VK +AYG G +   PAL +A    F V  + E + ++        +  I 
Sbjct: 24  LDPTTKVLAMVKADAYGHGIDATVPALIHA--DGFGVACLSEAMAVKQVLDGMNHKKPIV 81

Query: 82  VLYGIHPGQE-KIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQVDTGFNRLGLS 138
           ++ G     E K+  D +   +I    QL +    +       H   L+ +TG +RLG +
Sbjct: 82  LIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALSHRPKQDQFCHTIWLKYNTGMSRLGFN 141

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----A 194
               +  T        G   ++ SH ACADD S  +N+ Q+ +F   ++  +       A
Sbjct: 142 DDHII--TAAKSLADAGYRLILTSHFACADDKSHPLNAQQISKFDQALACIRSFAPDTLA 199

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAEARIILIRKALAG 251
           SL +S+GI    + H    R GI+LYG    TD+  K+  +   +T  A+++ I    AG
Sbjct: 200 SLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQSAKALNLMPAMTLSAQVMAIHTLAAG 259

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
           + + Y       +   IAV +IGY DGYP  + G  ++ S +   G +     ++  I+G
Sbjct: 260 DSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG--AKVSVTDTSGNR-----HLCDIIG 312

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           ++ MDM M DI D L I +   + ++G    +D+VA+ +GT  Y+L+ R+ TR
Sbjct: 313 RVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDEVAMCAGTIGYELMCRLTTR 364


>gi|326562891|gb|EGE13178.1| alanine racemase [Moraxella catarrhalis 46P47B1]
 gi|326563668|gb|EGE13920.1| alanine racemase [Moraxella catarrhalis 103P14B1]
 gi|326573276|gb|EGE23244.1| alanine racemase [Moraxella catarrhalis 101P30B1]
          Length = 383

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 167/353 (47%), Gaps = 26/353 (7%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL----YTPQARIF 81
           L    +  A+VK +AYG G +   PAL +A    F V  + E + ++        +  I 
Sbjct: 27  LDRTTKVLAMVKADAYGHGIDATVPALIHA--DGFGVACLSEAMAVKQVLDGMNHKKPIV 84

Query: 82  VLYGIHPGQE-KIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQVDTGFNRLGLS 138
           ++ G     E K+  D +   +I    QL +    +       H   L+ +TG +RLG +
Sbjct: 85  LIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALSHRPKQDQFCHTIWLKYNTGMSRLGFN 144

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----A 194
               +  T        G   ++ SH ACADD S  +N+ Q+ +F   ++  +       A
Sbjct: 145 DDHII--TAAKSLADAGYRLILTSHFACADDKSHPLNAQQISKFDQALACIRSFAPDTLA 202

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAEARIILIRKALAG 251
           SL +S+GI    + H    R GI+LYG    TD+  K+  +   +T  A+++ I    AG
Sbjct: 203 SLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQSAKALNLMPAMTLSAQVMAIHTLAAG 262

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
           + + Y       +   IAV +IGY DGYP  + G  ++ S +   G +     ++  I+G
Sbjct: 263 DSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG--AKVSVTDTSGNR-----HLCDIIG 315

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           ++ MDM M DI D L I +   + ++G    +D+VA+ +GT  Y+L+ R+ TR
Sbjct: 316 RVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDEVAMCAGTIGYELMCRLTTR 367


>gi|312602482|ref|YP_004022327.1| alanine racemase [Burkholderia rhizoxinica HKI 454]
 gi|312169796|emb|CBW76808.1| Alanine racemase (EC 5.1.1.1) [Burkholderia rhizoxinica HKI 454]
          Length = 356

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 156/339 (46%), Gaps = 28/339 (8%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AVVK NAYG G  ++ P L +     F +  +EE VKLR       I +L G   P    
Sbjct: 32  AVVKANAYGHGLARVFPGLRS--TDGFGLLDLEEAVKLRELGWAGPILLLEGFFRPTDID 89

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTGFNRLG-LSLQEALDFTHNS 149
           +I   +L   +    QL     L    +S P  +Q  +++G NRLG ++ +    +    
Sbjct: 90  VIDRYSLTTTVHCDEQLRM---LEMARLSKPVNIQLKMNSGMNRLGYVAGKYRAAWERAR 146

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
               +GQ++L+ +H + AD      +  QLE F        G   SLA+S+  L  P  H
Sbjct: 147 ACPSVGQITLM-THFSDADGEMGIRH--QLEVFEHGAEGIAG-SRSLANSAATLWHPYAH 202

Query: 210 FQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
           F   RPGI LYG    G     +   +Q  +T  + +I ++    G+ V YG   K    
Sbjct: 203 FDWVRPGIILYGASPSGVSAAIEGLGLQPAMTLSSELIAVQTVEPGDSVGYGSAFKARER 262

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
             I V A GYADGYP        E +P         + G    ++G+++MDM   D++  
Sbjct: 263 MRIGVVACGYADGYPRCAP----EGTPVQ-------VGGVRTRVVGRVSMDMLTVDLSSC 311

Query: 326 LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +  +G  +Q++G D+ +DDVA A GT  Y+L+  +  R
Sbjct: 312 PNAVIGSPVQLWGADVPIDDVAAACGTVGYELMCAVAQR 350


>gi|42524510|ref|NP_969890.1| hypothetical protein Bd3124 [Bdellovibrio bacteriovorus HD100]
 gi|39576719|emb|CAE80883.1| alr [Bdellovibrio bacteriovorus HD100]
          Length = 402

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 184/395 (46%), Gaps = 51/395 (12%)

Query: 10  KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  LK+N   +  A         +VK NAYG G  ++A  L + G++   V  +EEG
Sbjct: 10  EINLDHLKHNIQVLQKAFPQAPFLCPMVKANAYGHGDVQLARFLESLGIKHLGVCLIEEG 69

Query: 69  VKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR     A I V  G    G EKII + N+ PV+SS  Q+     + S  V     L+
Sbjct: 70  LLLRRSGVNAEILVFRGFDREGAEKII-EYNMTPVVSSWEQIDHLEAVASDPVG--IHLK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP--SSHVNSVQLERFRTL 185
            DTG NRLG   +EA       +  K  +L  +++HL   +D   S  +++ QL     +
Sbjct: 127 FDTGMNRLGFRPEEAQKLFDRLWQNKKIRLKALVTHLFNGEDATDSQGISARQLRDLNRV 186

Query: 186 ISHYK--GIEASLASSSGILLG---------PNYHFQLT-----RPGISLYG----GTDK 225
            + +K   I     +S+GI+           P  H         RPG+ +YG    G + 
Sbjct: 187 STVFKPFNIFCHALNSAGIMSALQMKDAGNTPADHPLFMQNWGLRPGLMIYGYNPLGQNS 246

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                P   V++ ++ +   R+   GE VSYGG     +DS+IAV  IGYADGY   L  
Sbjct: 247 FGGLKP---VMSLKSHVATYRQLHIGETVSYGGTWTAKQDSVIAVVPIGYADGYHRIL-- 301

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDY----IQIF--- 337
             S  S  VF G +       VP++G I MD  M D+T+ +   ++ D+    + +F   
Sbjct: 302 --SNQSSVVFAGKR-------VPLVGSICMDYLMLDVTEVVRGKDLKDFKDQEVTLFGFA 352

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
             G  +  +++A+ + +  +++L  +G R  + Y+
Sbjct: 353 SDGSFLSPEELAVQAKSITWEMLTSVGERVPRIYS 387


>gi|266620460|ref|ZP_06113395.1| alanine racemase [Clostridium hathewayi DSM 13479]
 gi|288867938|gb|EFD00237.1| alanine racemase [Clostridium hathewayi DSM 13479]
          Length = 394

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 172/376 (45%), Gaps = 31/376 (8%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++L A++ N  +M A L        VVK + YG G   +A A+ +  V  +   + EE V
Sbjct: 11  VNLDAIRQNMEAMRANLKEGTGMIGVVKADGYGHGSVPVACAI-DPYVSGYATATPEEAV 69

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
            LR +     I +L G+ P    + +    L P +         S+L +  G   P  + 
Sbjct: 70  ILRRHGITKPILIL-GVSPESSFEDLIRYELRPAVFRYESAARLSELSVKAGKISPIHIA 128

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +R+G  +  A        ++  G ++  + +H A AD+      + Q+E F   I
Sbjct: 129 LDTGMSRIGYPVTAAAAEETVRISRLPGIRIEGLFTHFARADERDKGATARQMELFTEFI 188

Query: 187 SHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
           S    +GI   +   ++S+GIL  P  +F   R GIS+YG   +D++ K  P+      E
Sbjct: 189 SMLTERGITIPVLHCSNSAGILELPQANFNAVRAGISIYGLYPSDEVEK-EPVHLTPAME 247

Query: 240 AR--IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I  ++    G  VSYGG     R + IA   +GY DGYP +LSG            
Sbjct: 248 LKSTISYLKTIAPGTPVSYGGTFTAERKTAIATIPVGYGDGYPRSLSGR----------- 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G    ILG++ MD  M D T+    E GD + + G D    I ++++A   G  
Sbjct: 297 GDVLIRGRRARILGRVCMDQLMVDTTEIPEAEEGDEVTLIGKDGDEEITVEELARIGGGF 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++L  IG R  + Y
Sbjct: 357 HYEILCDIGKRVPRVY 372


>gi|326565252|gb|EGE15437.1| alanine racemase [Moraxella catarrhalis 12P80B1]
          Length = 383

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 167/353 (47%), Gaps = 26/353 (7%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL----YTPQARIF 81
           L    +  A+VK +AYG G +   PAL +A    F V  + E + ++        +  I 
Sbjct: 27  LDPTTKVLAMVKADAYGHGIDATVPALIHA--DGFGVACLSEAMAVKQVLDGMNHKKPIV 84

Query: 82  VLYGIHPGQE-KIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQVDTGFNRLGLS 138
           ++ G     E K+  D +   +I    QL +    +       H   L+ +TG +RLG +
Sbjct: 85  LIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALSHRPKQDQFCHTIWLKYNTGMSRLGFN 144

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----A 194
               +  T        G   ++ SH ACADD S  +N+ Q+ +F   ++  +       A
Sbjct: 145 DDHII--TAAKSLADAGYRLILTSHFACADDKSHPLNAQQISKFDQALACIRSFAPDTLA 202

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAEARIILIRKALAG 251
           SL +S+GI    + H    R GI+LYG    TD+  K+  +   +T  A+++ I    AG
Sbjct: 203 SLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQSAKALNLMPAMTLSAQVMAIHTLAAG 262

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
           + + Y       +   IAV +IGY DGYP  + G  ++ S +   G +     ++  I+G
Sbjct: 263 DSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG--AKVSVTDTSGNR-----HLCDIIG 315

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           ++ MDM M DI D L I +   + ++G    +D+VA+ +GT  Y+L+ R+ TR
Sbjct: 316 RVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDEVAMCAGTIGYELMCRLTTR 367


>gi|241889490|ref|ZP_04776789.1| alanine racemase [Gemella haemolysans ATCC 10379]
 gi|241863797|gb|EER68180.1| alanine racemase [Gemella haemolysans ATCC 10379]
          Length = 371

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 174/376 (46%), Gaps = 29/376 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            L++DL A+ NN++ + AL+      A+VK ++YGLG   IA  LY  GV+ F   ++EE
Sbjct: 8   ELRVDLNAILNNYNKLTALNNKKTGIAIVKADSYGLGARAIANHLYKNGVRHFATATLEE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++L+     + + VL   +P   K   + N+ +   S V       ++ +        +
Sbjct: 68  ALELKDVIFDSMVLVLGVTNPQNVKYAVENNVSLTCPSKVWLEKCLEEMETIKGKLKIHV 127

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL----ERF 182
           +++TG  R+G S +E L       + +      I SH + AD   ++ +  Q     ER 
Sbjct: 128 KIETGMGRIGTSDKEELVKIDKLLSSEKIDFEGIFSHYSNADGSDNNYDDYQTKNFDERL 187

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
           +      K I    ++S+         + +TR GISLYG       +K++K   ++ VV+
Sbjct: 188 KLFTHKPKYIHIGNSASTVKYSDRQDQYNMTRLGISLYGCYPSENIEKLDKI-KLEPVVS 246

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             ++I  ++K L GE + YG   +  +D  IA   IGYADG      G        + +G
Sbjct: 247 LVSKITHVKKFLKGEKLGYGVSYEAKQDEYIATVPIGYADGILRRAQGF------KIKVG 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            +         I+G++ MD  M  +  S +I+VGD + IFG +    I +DD A    T 
Sbjct: 301 TED------CEIVGRVCMDQLM--VRCSENIKVGDDVLIFGENNGQKISVDDFATFQDTI 352

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  + Y
Sbjct: 353 SYEIFCCINKRVPRVY 368


>gi|311740005|ref|ZP_07713839.1| alanine racemase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305078|gb|EFQ81147.1| alanine racemase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 368

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 168/373 (45%), Gaps = 24/373 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            L+  IDL+A+ +N   +    G   +   VVK +AYG G  K+ P +  AG   F V +
Sbjct: 4   MLKTTIDLSAIAHNVRLIKEKVGPEVKLMCVVKADAYGHGAAKVVPVMARAGADCFGVAT 63

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHP 123
           + E V LR     A I         Q   I +  L   I  +V  L    KL+       
Sbjct: 64  LREAVDLRRAGVDAPIVAWIW----QTDEILEEALANGIEVAVNSLEQAHKLVKADFPAE 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++V+TG +R G+  ++  +      +    ++  ++SH ACAD+P +  N  Q E FR
Sbjct: 120 VYVKVETGMHRSGVDEEDWAETFKVLRDAPHIKVLGLMSHFACADEPDNPHNDAQEEAFR 179

Query: 184 TLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           T +   +  G+E     LA+S  +L  P+ +F+  R G + YG      + H ++  +T 
Sbjct: 180 TALQLAREIGLECPVNHLANSPAVLTRPSSYFEQVRVGAACYGLEPIEGREHGLRPAMTW 239

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             +I  ++    GE   YG   K  +   +A    GYADG P    G        + +G 
Sbjct: 240 SGQIFNVKPIQPGEGTCYGLTWKADKPGFLATVDCGYADGLPRGYQG-------DLHVG- 291

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYD 356
              I G++ P +G+I MD  + D+ ++   ++ G    IFG   +   D+A A+GT NY+
Sbjct: 292 ---IGGHLYPQVGRICMDQIVVDLGENPHGVDTGQDAVIFGNGGVSATDLAAAAGTINYE 348

Query: 357 LLVRIGTRYAKFY 369
           ++     R  + Y
Sbjct: 349 VVCLPDGRTEREY 361


>gi|291536141|emb|CBL09253.1| alanine racemase [Roseburia intestinalis M50/1]
          Length = 389

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 182/398 (45%), Gaps = 57/398 (14%)

Query: 4   NEFLRL--KIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAG- 56
           N + R+  +IDL A+    H+M+A+ GN     +  AV+K + YG G  +IA  +     
Sbjct: 2   NRYSRVHAEIDLDAI---LHNMDAMRGNIAKDTKIMAVIKADGYGHGAVEIAETIEKLDY 58

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KL 115
           +  + V +VEEG+ LR +  Q  I +L  + P Q   +    + P + +       S   
Sbjct: 59  LYGYAVATVEEGLILRNHGIQKPILILGYVFPDQYVDMIKAGIRPTVFTREMAEKLSVAA 118

Query: 116 MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSL--------IISHLAC 166
            S G        +DTG +R+G  + +EA D        ++ QLS         I +H A 
Sbjct: 119 ASIGRDCKIHFAIDTGMSRIGYQVTEEAAD--------EMAQLSKLPHIIVEGIFTHFAK 170

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG 221
           AD+        Q++ FR +I   +    S+     ++S+GI+  P  +  + R GI+LYG
Sbjct: 171 ADEKDKEPTYQQIKLFRKMIDMLEERGVSILIHHCSNSAGIVDIPEANMDMVRAGITLYG 230

Query: 222 --GTDKINKS----HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275
              ++ ++K+     P  ++VT    +  +++  AG  +SYGG        +IA   +GY
Sbjct: 231 MWPSEDVDKTAISLKPALSLVT---HVAYVKELPAGRAISYGGTYVTKEPRMIATIPVGY 287

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335
           ADGY   LS             G   I G   PILG++ MD  M D+TD   ++  D + 
Sbjct: 288 ADGYARGLSN-----------KGAVLIHGRRAPILGRVCMDQFMVDVTDIPDVKNEDEVI 336

Query: 336 IFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + G D    I +++V   SG  NY+    +G R  + Y
Sbjct: 337 LIGRDGDECITMEEVGGLSGRFNYEFACDLGKRIPRVY 374


>gi|289579033|ref|YP_003477660.1| alanine racemase [Thermoanaerobacter italicus Ab9]
 gi|289528746|gb|ADD03098.1| alanine racemase [Thermoanaerobacter italicus Ab9]
          Length = 385

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 175/388 (45%), Gaps = 49/388 (12%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R +I L  + +N   +    G   +   VVK NAYG G   +A  L   GV    V ++E
Sbjct: 9   RAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACHVAKVLVENGVCYLGVATIE 68

Query: 67  EGVKLRL-----------YTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
           E ++LR            YTP  QA   +++ I     + +FD N +  +  +       
Sbjct: 69  EALELRECGINIPILVFGYTPLTQAEELIVHNI----TQTVFDINYVEDLEKIA------ 118

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
             +  G      +++DTG  R+G + L+ A          +  ++  I SH A +D+   
Sbjct: 119 --LKVGKKAKVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKDK 176

Query: 173 HVNSVQLERFRTLISHYK--GIEASLA--SSSGILLGPNY-HFQLTRPGISLYGG--TDK 225
                Q + F+ L+   K  GI   L   ++SG ++   Y +  + RPGI LYG   +++
Sbjct: 177 SYAEQQFDMFKKLLERLKEKGINIPLKHMANSGAIIDLKYTYLDMVRPGIVLYGSYPSEE 236

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           + +   ++  +  + +I+ I++   G  +SYG      R S IA   +GYADG+   LS 
Sbjct: 237 VKRPLDLKQTMGFKTKIVYIKEVPEGTSISYGKTFITKRKSKIATLPVGYADGFNRLLS- 295

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDI 341
            ++ H           +KG    ++G+I MD TM D+TD   +EVGD + IF    G  I
Sbjct: 296 -NNYHV---------LVKGKYAAVVGRICMDQTMIDVTDIEGVEVGDDVIIFGNQEGEKI 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
             +++A    T  Y++   I +R  + Y
Sbjct: 346 TAEEIAKKLNTIPYEVYCGISSRVPRIY 373


>gi|255020460|ref|ZP_05292525.1| alanine racemase [Acidithiobacillus caldus ATCC 51756]
 gi|254970070|gb|EET27567.1| alanine racemase [Acidithiobacillus caldus ATCC 51756]
          Length = 365

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 168/373 (45%), Gaps = 28/373 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  I  +AL +N     A    A+  A VK NAYG G    AP L  AGV+ F V S+E
Sbjct: 5   VRACISASALAHNVAVARARMPGAKLMAAVKANAYGHGLAVCAPELARAGVEGFAVASME 64

Query: 67  EGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  +L          +L G   PG+  +      I VI    QL +   L     + P +
Sbjct: 65  EAEQLYDLALGPSACLLAGPFAPGEIPLAAARGHILVIHRAAQLAW---LQEQRWNRPLS 121

Query: 126 LQV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLER 181
           + +  D+G +RLG +   AL     +       L +  ++SHLA +D P+   N+ Q+  
Sbjct: 122 IWIKFDSGMHRLGFA-PSALGPVFEALAAVQSPLRILGLMSHLARSDTPNDPHNTRQIRE 180

Query: 182 FRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
           FR  I  +      E SLA+S  +L      F   RPG+ LYG +    +  +   ++ V
Sbjct: 181 FRAAIGQWGERTLGEHSLANSGAVLALGEARFPWMRPGLMLYGLSPFPGQTGRDLGLRPV 240

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ +A+II  R+   GE + YG   +   +  + V A GY DG+   L            
Sbjct: 241 LSWQAQIIATRRLAPGEWLGYGAAYQAPHEQRVGVVACGYGDGFDRHLG----------- 289

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK-LDDVALASGTTN 354
            G   +I       LG+++MD+   D+ DS + E GD++ + G   + L+ +A   GT  
Sbjct: 290 QGAPVWIGSQRSQTLGRVSMDLLFVDLQDSDAQE-GDWVTLMGVGAEPLESLAERLGTIP 348

Query: 355 YDLLVRIGTRYAK 367
           Y+L  RI  R  +
Sbjct: 349 YELGTRIQARVPR 361


>gi|239637370|ref|ZP_04678352.1| alanine racemase [Staphylococcus warneri L37603]
 gi|239596970|gb|EEQ79485.1| alanine racemase [Staphylococcus warneri L37603]
          Length = 382

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 184/394 (46%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L IDL A+ +N+ + + L  N    +V+K N YGLG  +IA  L   G   
Sbjct: 2   SEKFYRSTYLNIDLNAILSNYQTFDKLHANKTVISVIKANGYGLGSVRIAQHLMENGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           F V +++E ++LR++  +A+I +L  I P   K I       V  +VP  ++  + + + 
Sbjct: 62  FAVATLDEAIELRMHGIKAKILILGVIPP---KDINKAIQHRVALTVPSKSWLKESIKNI 118

Query: 119 GVSHPYA----LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACAD 168
              +  A    L++DTG  RLG+      +E +D        K  QL    + +H ACAD
Sbjct: 119 SDENEKALWLHLKLDTGMGRLGMKDVEEYKEVVDII-----SKYDQLVFEGVYTHFACAD 173

Query: 169 DPSSHVNSVQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-- 221
           +P   + + Q ++F+ L+      HY        +S+G LL         R GISLYG  
Sbjct: 174 EPGDDM-ATQYQKFKELVEQVEKPHY----IHTQNSAGSLLMDGQFCNAIRLGISLYGYY 228

Query: 222 GTDKINKSHPMQTVVTAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
            ++ + ++  +    +A+  + I+  +    G+ VSYG     T  + IAV  IGYADGY
Sbjct: 229 PSEYVKENVKVHLKPSAQLVSEIVQTKTLNVGDSVSYGSTYTATEPTRIAVLPIGYADGY 288

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339
             ++             G    + G    ++G++ MD TM  I D  +++VGD + +   
Sbjct: 289 LRSMQ------------GSYVNVNGQQCEVIGRVCMDQTMVKIPD--TVKVGDKVILLDN 334

Query: 340 DI----KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +     ++ +A    T NY++L  +  R  + Y
Sbjct: 335 HVDTEQSVEALAKQQNTINYEVLCNLSRRLPRIY 368


>gi|183599314|ref|ZP_02960807.1| hypothetical protein PROSTU_02779 [Providencia stuartii ATCC 25827]
 gi|188021549|gb|EDU59589.1| hypothetical protein PROSTU_02779 [Providencia stuartii ATCC 25827]
          Length = 356

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 171/368 (46%), Gaps = 38/368 (10%)

Query: 16  LKNNWHSMNALS---GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72
           L+N  H+++ +    G+A+  +V+K +AYG   + +  AL  A    F +  + E + LR
Sbjct: 11  LQNFTHNLSVVRQHVGHAKIWSVMKADAYGHSIKHVWKAL--AASDGFAILDLNEAILLR 68

Query: 73  LYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV--D 129
               +  I +L G   P   K+I    L   + S  QL     + +    +P ++ V  +
Sbjct: 69  EQGWKGPILLLEGFFQPDDLKVIDQYQLTTAVHSYWQL---DAIENRHFQNPISVYVKLN 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G NRLG    E     H     +  +   +++H A +D       S   ++   +I  +
Sbjct: 126 SGMNRLGFEPPEYAQVVHRLSAMENVETVTLMTHFANSD------LSTGTDKPHAIIKQF 179

Query: 190 --KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTVVTAEAR 241
                   +A+S   L  P  H+   R G+ LYG +      D  +K   ++  +T +++
Sbjct: 180 IDGQFPVCIANSGATLWHPKTHYDWVRSGVILYGASPSGRWQDIADKD--LRATMTLQSQ 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II   +  AGE + YG +        IA  A GYADGYP         H+P+   G   +
Sbjct: 238 IIATHEIAAGESIGYGSKFTAPYPMKIATVACGYADGYP--------RHAPT---GTPIW 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G   P+LG ++MDM   D+++  + ++GD ++++G ++ +DDVA A+GT  Y+L+  +
Sbjct: 287 LNGTRCPLLGTVSMDMLTIDVSECPTAKIGDRVELWGKNLPIDDVAQAAGTIGYELMCAL 346

Query: 362 GTRYAKFY 369
             R    Y
Sbjct: 347 AKRVPVVY 354


>gi|148273757|ref|YP_001223318.1| putative alanine racemase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831687|emb|CAN02656.1| putative alanine racemase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 566

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 178/379 (46%), Gaps = 33/379 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DL A+++N  ++ AL+  ART   VK +AYG G  ++A A   AG +   V  V  
Sbjct: 17  RAVVDLDAIRHNVRTLAALAAPARTMVAVKADAYGHGALQVARAALEAGAESLAVLDVAS 76

Query: 68  GVKLRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            V+LR     AR+   L+G+     ++  +  +   +S++ +L   +    + G+     
Sbjct: 77  AVELRRSGITARLLAWLHGVDT-DFRVAVENGIDLGVSALWELERIAAAGRATGIRARVH 135

Query: 126 LQVDTGFNRLGLSLQEALDFTH-NSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           L+ DTG +R G + +   D           G+L+L  + SHLA   D S   +   L RF
Sbjct: 136 LKADTGLSRNGATPELWPDLVRAAVAADAAGELTLHALWSHLA---DASPEDDDAALARF 192

Query: 183 RTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQT 234
              +        + +E  LA+SS  +  P   F + R GI++YG +   D+  +   +  
Sbjct: 193 HEAVRVAEELGARPVEKHLAASSAGIRLPAARFDMVRFGIAVYGISPFDDRSGRDLGLIP 252

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T EA ++ +++  AG  VSYG   +    S + +  +GYADG P       +    SV
Sbjct: 253 AMTLEADVVSVKRVEAGHGVSYGLDHRTAGPSTLVLVPLGYADGIPRI-----AAPRASV 307

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
            L G+ F      P+ G+I MD  + D+ D L +EVGD   I GP    +   ++ A  +
Sbjct: 308 LLNGRRF------PVAGRIAMDQLVLDVGD-LPVEVGDTAVILGPGDRGEPTAEEWAGWA 360

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T   +++ R+G R  + +
Sbjct: 361 ETIGDEIVTRVGPRVDRVH 379


>gi|150391836|ref|YP_001321885.1| alanine racemase [Alkaliphilus metalliredigens QYMF]
 gi|149951698|gb|ABR50226.1| alanine racemase [Alkaliphilus metalliredigens QYMF]
          Length = 391

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 172/376 (45%), Gaps = 28/376 (7%)

Query: 10  KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  LK+N   +   ++ +    AVVK N YG G   IA  L + G     V ++ E 
Sbjct: 13  EINLDHLKHNIREVKKVINKDTLLCAVVKANGYGHGVMTIAKTLLDHGADRLAVATLSEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++LR    Q    ++ G  P  Q ++I D N+I  I +  Q    +K+      S    L
Sbjct: 73  IELRQGGYQDIPILVLGYTPETQGQVILDYNVIQTIYTYEQAKALAKIGKEQKKSMTIHL 132

Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG +  Q+ ++        +   +  I +H A AD+ +      Q   F  L
Sbjct: 133 KIDTGMSRLGFNCSQKTIEEIKQIIELEYINVEGIYTHFAVADEKNKDYTKFQFNCFMEL 192

Query: 186 ISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVT 237
               K  G +  +   ++S+ I+  P+ +  + R GI LYG     D  +++  ++ V+ 
Sbjct: 193 TEELKKEGYQIPIRHVSNSAAIIDLPDMNLDMVRAGIMLYGLYPSPDVNHEAVQLKQVME 252

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + R+  ++  L  + VSYG   K   +  I    IGYADG+   L+             
Sbjct: 253 LKTRVAHVKNVLPQQGVSYGLTYKTKGEEKIITLPIGYADGFTRMLTD-----------K 301

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            +  +KG   PI+G+I MD  M D T  + IE GD + +F  D      +DD+A    T 
Sbjct: 302 AELILKGEKRPIVGRICMDQCMADAT-GIEIEQGDVVTLFSNDPASGCSIDDIARKLNTI 360

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +G R  + Y
Sbjct: 361 NYEIVCMVGRRVPRAY 376


>gi|326560246|gb|EGE10634.1| alanine racemase [Moraxella catarrhalis 7169]
 gi|326566436|gb|EGE16586.1| alanine racemase [Moraxella catarrhalis BC1]
 gi|326570243|gb|EGE20288.1| alanine racemase [Moraxella catarrhalis BC8]
 gi|326570980|gb|EGE21004.1| alanine racemase [Moraxella catarrhalis BC7]
          Length = 380

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 167/353 (47%), Gaps = 26/353 (7%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL----YTPQARIF 81
           L    +  A+VK +AYG G +   PAL +A    F V  + E + ++        +  I 
Sbjct: 24  LDRTTKVLAMVKADAYGHGIDATIPALIHA--DGFGVACLSEAMAVKQVLDGMNHKKPIV 81

Query: 82  VLYGIHPGQE-KIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQVDTGFNRLGLS 138
           ++ G     E K+  D +   +I    QL +    +       H   L+ +TG +RLG +
Sbjct: 82  LIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALSHRPKQDQFCHTIWLKYNTGMSRLGFN 141

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----A 194
               +  T        G   ++ SH ACADD S  +N+ Q+ +F   ++  +       A
Sbjct: 142 DDHII--TAAKSLADAGYRLILTSHFACADDKSHPLNAQQISKFDQALACIRSFAPDTLA 199

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAEARIILIRKALAG 251
           SL +S+GI    + H    R GI+LYG    TD+  K+  +   +T  A+++ I    AG
Sbjct: 200 SLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQSAKALNLMPAMTLSAQVMAIHTLAAG 259

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
           + + Y       +   IAV +IGY DGYP  + G  ++ S +   G +     ++  I+G
Sbjct: 260 DSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG--AKVSVTDTSGNR-----HLCDIIG 312

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           ++ MDM M DI D L I +   + ++G    +D+VA+ +GT  Y+L+ R+ TR
Sbjct: 313 RVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDEVAMCAGTIGYELMCRLTTR 364


>gi|268595182|ref|ZP_06129349.1| alanine racemase [Neisseria gonorrhoeae 35/02]
 gi|268548571|gb|EEZ43989.1| alanine racemase [Neisseria gonorrhoeae 35/02]
          Length = 375

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 180/378 (47%), Gaps = 40/378 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           NEF+R   ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F
Sbjct: 21  NEFMRPLNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGF 78

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V +++EG++LR       I +L G+    E + +   +L P + +  QL     L+S  
Sbjct: 79  AVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRH 135

Query: 120 VSHPYA--LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDP 170
              P    L++D+G +R G        F H+  S    L Q   +      SH +CAD+P
Sbjct: 136 WKKPVKVWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEP 188

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            S +  +Q+E F       +G E SLA+S+ IL  P       R G++LYG +       
Sbjct: 189 ESGMTEIQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGNDD 247

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V+    RI   R       + YG     ++ + + + A GYADGYP         +
Sbjct: 248 RLKPVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSN 303

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
           SP         + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+
Sbjct: 304 SPVA-------VDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAA 355

Query: 351 GTTNYDLLVRIGTRYAKF 368
           GT  Y+L+  I  + AKF
Sbjct: 356 GTIPYELMCNI--KRAKF 371


>gi|46143476|ref|ZP_00135191.2| COG0787: Alanine racemase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
          Length = 343

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 41/354 (11%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           ++K NAYG G    A  L +  V+ F V  + E ++++      +I ++ G    +E + 
Sbjct: 1   MIKANAYGQGLLPAADTLADL-VEGFGVARLREALEIQETGYTGKILLIEGFFDREELLK 59

Query: 95  -----FDTNL-----IPVISSVP-------QLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137
                FDT +     + ++  V        Q  F+ +           L++DTG +RLG+
Sbjct: 60  TLSRRFDTVIHCQEQLELLEQVAEEWQQEQQKGFWKRKAKIYFPINVWLKIDTGMHRLGV 119

Query: 138 SLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLERFRTLISHYKGI 192
             ++      + F ++L    L+     +SH + AD+P       Q+  F    S Y   
Sbjct: 120 HPEQV-----DMFYQRLKACPLVESISFVSHFSRADEPDCGYTEKQIAIFEAATSPYPTH 174

Query: 193 EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAEARIILIRKALA 250
           E S+++SSGIL     H+   RPGI ++G +        +  + V+T  + +I +R   A
Sbjct: 175 ERSISASSGILYWKQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKA 234

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           GE V YGG     +D+ + V A+GY DGYP         ++P    G    + G +VPI+
Sbjct: 235 GEPVGYGGTWISDKDTKLGVVAMGYGDGYP--------RNAPE---GTPVLVNGRIVPIV 283

Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           G+++MDM   D+      +VGD +  +G D+ +++VA   G  +Y+L+ ++  R
Sbjct: 284 GRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEEVAQHIGVISYELITKLTPR 337


>gi|213612760|ref|ZP_03370586.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 322

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 162/341 (47%), Gaps = 34/341 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L+ SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            R +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+  
Sbjct: 233 MTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT-- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
            G    + G     +G ++MDM   D+T      +G  +++
Sbjct: 283 -GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVEL 322


>gi|194364223|ref|YP_002026833.1| alanine racemase [Stenotrophomonas maltophilia R551-3]
 gi|194347027|gb|ACF50150.1| alanine racemase [Stenotrophomonas maltophilia R551-3]
          Length = 355

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 176/376 (46%), Gaps = 40/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L G  +  A++K +AYG G  + A AL       F V ++EE
Sbjct: 5   RALIDLGALRSNYRLARELGGG-KALAIIKADAYGHGAVRCAQAL-EGEADGFGVATIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR     A I +L GI    +  ++ + +    + S  QL   +   S     P   
Sbjct: 63  ALELRQAGIGAPILLLEGIFEASDMALVAEHDFWFAVGSPWQLEALAAFDS---PRPLTV 119

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--------LIISHLACADDPSSHVNS 176
            L++D+G +RLGL +        +SF     +LS        ++++HLA AD+  S    
Sbjct: 120 WLKLDSGMHRLGLDV--------DSFRAAHARLSALPQVERVVLMTHLARADELDSERTH 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQ 233
            Q   F   I   +G E S+ +S  +L  P+      RPG+ LYG     D  + +  ++
Sbjct: 172 EQAATFARAIDGLEG-ETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDNTDLTARLR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T ++++I  R   +GE V YG +      + + V A+GYADGYP        + +P+
Sbjct: 231 PVMTMQSKVIAERWIESGEPVGYGARFVSKARTRVGVVALGYADGYP--------QFAPN 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    I G    ++G+++MDM   D+T      VG  ++++G    L ++A   G +
Sbjct: 283 ---GTPVLIDGQPGALIGRVSMDMLTVDLTAHPQAGVGSVVELWGNAPTLSELAPRCGVS 339

Query: 354 NYDLLVRIGTRYAKFY 369
            Y L   +  R A+ Y
Sbjct: 340 AYQLPCGV-KRVARVY 354


>gi|291519681|emb|CBK74902.1| alanine racemase [Butyrivibrio fibrisolvens 16/4]
          Length = 389

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 172/381 (45%), Gaps = 38/381 (9%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+  N+  +    G N +   VVK +AYG G  ++A  L   G     V+S +E 
Sbjct: 11  EVNLDAIAYNYKKIKEKIGENTKFLGVVKADAYGHGSVQVAQLLEEIGADYLAVSSADEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYA 125
           ++LR+   +  I +L   H  +E++  + + N+   I+   +   YS + + CG +    
Sbjct: 71  LELRVNGIKMPILILG--HTPKEQVGRLIEYNITQAITCKAKADEYSAEAVKCGGTLKVH 128

Query: 126 LQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           ++VDTG +RLG           +D    + N        I +H A AD+     +     
Sbjct: 129 IKVDTGMSRLGYLCDNGYFDTGVDGIVEACNMPGLSAEGIFTHFAVADEFGDECDKYTKH 188

Query: 181 RFRTLISHYKGIEASL---------ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           +F       + +E  L         A++  +   P  +  + RPG+ LYG   +      
Sbjct: 189 QFELFTGVIEAVEEKLGRKFAIRHCANTGAVARFPETYLDMVRPGLLLYG-YGEFAHEMG 247

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG---LDS 288
           ++  +T +  +  I+   AG  +SYGG  K  + + I V   GYADG+  +LS    L +
Sbjct: 248 LKPAMTMKTTVSTIKIYPAGTAISYGGIFKTEKTTRIGVLPYGYADGFLRSLSNKCSLYT 307

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
           +  P+               + GKI MDM M DITD  S++VG  ++IFG    +D++A 
Sbjct: 308 KEGPA--------------KLRGKICMDMCMIDITDMPSVDVGSEVEIFGEKNSIDELAE 353

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            +GT  Y+L   +  R  + Y
Sbjct: 354 LAGTIPYELTCAVSKRVPRVY 374


>gi|261856961|ref|YP_003264244.1| alanine racemase [Halothiobacillus neapolitanus c2]
 gi|261837430|gb|ACX97197.1| alanine racemase [Halothiobacillus neapolitanus c2]
          Length = 367

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 178/369 (48%), Gaps = 33/369 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L A ++N+    A  G  R  AVVK +AYG G  + A A+ +     F V  +EE + 
Sbjct: 9   IRLDAFRHNYRLAKAAHGG-RALAVVKADAYGHGAVECARAIADEA-DGFAVAMIEEALS 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR     A I +L G     E + I   NL  V+    Q+     L++  ++ P    L+
Sbjct: 67  LRAAGITAPILLLEGFFDVSELLDIQIHNLWIVVHHRWQV---DALLAAHLTRPITVWLK 123

Query: 128 VDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +R+G++  Q    +     +  + Q+ +++SH A AD+P S     QLE F    
Sbjct: 124 MDSGMHRVGIAPDQYRATYERLKNHPSIAQI-VLMSHFARADEPESGHMLQQLETFHAAT 182

Query: 187 SHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAE 239
               GI+A  SL++S+ +L          RPGI LYG    + K+       ++ V+  E
Sbjct: 183 ---MGIDAPVSLSNSAAVLGWSGARADWARPGIMLYGADPFVGKAGASIAEQLRPVMRLE 239

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             II +R    GE + YGG     R + + V + GYADGYP T        +P+   G  
Sbjct: 240 GGIISVRIIARGEPLGYGGAFVADRPTRVGVVSCGYADGYPRT--------APT---GTP 288

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +  ++G+++MDM   D+T     ++G  ++++G  + ++ VA   GT  Y+LL 
Sbjct: 289 VAVDGQLTRLIGRVSMDMLTVDLTHLPQADIGSRVELWGDQVPVNAVASRVGTIAYELLC 348

Query: 360 RIGTRYAKF 368
            +  + A+F
Sbjct: 349 HV--KRARF 355


>gi|289450381|ref|YP_003475805.1| alanine racemase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184928|gb|ADC91353.1| alanine racemase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 386

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 171/382 (44%), Gaps = 40/382 (10%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I L  L NN  ++ A ++   +   V+K +AYG G    A  + + GV+   V +V+E 
Sbjct: 19  EISLANLANNIANIRAAIAPQVKIMGVIKGDAYGHGAVMTARTMIDCGVEYLAVATVDEA 78

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV----SHPY 124
           ++LR    +  I VL      +   I   +L     +V +LT    +    +    +   
Sbjct: 79  LELRGNDIKTPILVLGYTDVSRAMDIVANDLT---QTVYELTLPEAMSLAAIKLNKTAKI 135

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-----SLIISHLACADDPSSHVNSVQL 179
            L+++TG  R+G+   E L      F KKL  L       I +H A AD+  S    +Q 
Sbjct: 136 HLKIETGMERIGIPADEHL----IEFAKKLYALPNVDVEGIFTHFATADEAKSDFVKLQF 191

Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ- 233
           ERF+        + Y        +S+ IL  P YH  + R G  +YG         P Q 
Sbjct: 192 ERFKKATEVLATAGYYPRYRHCCNSAAILRYPEYHLDMVRAGGLVYGFVPDFCHVQPGQY 251

Query: 234 -TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             +++  A+++LI+K   G  + Y  +   +RD  +A  ++GY DG    LS        
Sbjct: 252 KPLMSLYAKVVLIKKVAKGTSIGYNRRFTASRDMWVATISVGYGDGIARALS-----EKL 306

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVA 347
            V L       G+ V  +G I MD+ M DITD +  +++GD + +FG      +  D++A
Sbjct: 307 QVLLA------GHRVRQVGNICMDLCMIDITDIVDQVKLGDQVTVFGAAATNSMTADELA 360

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++ + I  R  +FY
Sbjct: 361 ALQGTINYEITININKRVPRFY 382


>gi|258543958|ref|ZP_05704192.1| alanine racemase, biosynthetic [Cardiobacterium hominis ATCC 15826]
 gi|258520804|gb|EEV89663.1| alanine racemase, biosynthetic [Cardiobacterium hominis ATCC 15826]
          Length = 365

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 175/361 (48%), Gaps = 28/361 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ AL++N   +   +G A+  AVVK +AYG G   + PAL +  V  F V S++E ++
Sbjct: 18  IDVAALRHNVRVLRQQAGAAKLVAVVKADAYGHGVANVLPALTD--VDGFAVASMDEALQ 75

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       + +L GI    E  +    + +P + S  QL +   +   G+S    ++VD
Sbjct: 76  LRQLGVGQPVLLLEGIFAADEAALCAQHDFVPCVHSPEQLAWLRGVD--GISA--WVKVD 131

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G +RLG +  +A  +     + +  +   + SH ACAD         QL R   L +  
Sbjct: 132 SGMHRLGFAAADAASWLPQVLSLQQVRWLGVASHFACADAEDLSDAQAQLARLDAL-ALP 190

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIR 246
            G +  LA+S+ +   P    ++ R G++LYG +   D       ++ V++ + +++ +R
Sbjct: 191 AGWQRCLANSAALFALPEARGEVVRAGLALYGMSPFADGDAARLGLRPVLSLQTQVLAVR 250

Query: 247 KALAGELVSY--GGQKKLTRDSLIAVAAIGYADGYPLTL-SGLDSEHSPSVFLGGKGFIK 303
           +  AG+   Y  G Q ++  +  +A  A+GY DG+P  + SG     +  + L GK +  
Sbjct: 251 RLQAGDFAGYSHGFQAQVAGN--LATIALGYGDGFPRAIVSG-----AVQLLLNGKRY-- 301

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
               P++G++ MDM +  + +  +  VGD + +FG     + VA  + T  Y L   +  
Sbjct: 302 ----PLVGRVAMDMALLWLGED-TAAVGDAVLVFGEGNPAERVAAQAATIPYTLTTMLTA 356

Query: 364 R 364
           R
Sbjct: 357 R 357


>gi|330470100|ref|YP_004407843.1| alanine racemase [Verrucosispora maris AB-18-032]
 gi|328813071|gb|AEB47243.1| alanine racemase [Verrucosispora maris AB-18-032]
          Length = 372

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 181/379 (47%), Gaps = 35/379 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A++ N   M A + +A   AVVK + YG G    A A  +AG     V +++E 
Sbjct: 6   VRVDLDAIRENVDRMRAGT-SAELMAVVKADGYGHGMVPAARAALDAGATWLGVCTLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPG---QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           + LR     A +   + + PG      +  D +L   ++S+PQL    +  S     P  
Sbjct: 65  LALRAAGIDAPVLA-WLLAPGLPLHTGVAADVDL--GVASLPQLDEAVE-ASRRAQRPAR 120

Query: 126 --LQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L++DTG +R G ++ +    LD    +    L ++  + SH   AD P       QL 
Sbjct: 121 VHLKIDTGLSRNGATVADWPALLDAAAKAQADGLVEVVGVWSHFVYADMPGHPTTDRQLA 180

Query: 181 RFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            F   ++     G+      LA+S+  L  P+ HF L RPG+++YG +    ++H ++  
Sbjct: 181 VFHEGLAMVERAGLRPRYRHLANSAATLTRPDTHFDLVRPGLAVYGLSPVAGETHGLRPA 240

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +TA AR++L ++  AG  VSYG      RD+ +AV  +GYADG P   S     ++  V 
Sbjct: 241 MTARARVMLTKRVPAGTGVSYGHTYTTERDANLAVVPLGYADGVPRHAS-----NTGPVQ 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
           LGG+         I G++ MD  + D  D   +  GD   +FG     +   DD A A G
Sbjct: 296 LGGRRRT------ISGRVCMDQFVLDCGDD-PVAAGDVATLFGSGADGEPTADDWAEAVG 348

Query: 352 TTNYDLLVRIG-TRYAKFY 369
           T NY+++ R G +R  + Y
Sbjct: 349 TINYEIVTRFGSSRVPRVY 367


>gi|319789312|ref|YP_004150945.1| alanine racemase [Thermovibrio ammonificans HB-1]
 gi|317113814|gb|ADU96304.1| alanine racemase [Thermovibrio ammonificans HB-1]
          Length = 357

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 30/367 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVEEG 68
           ++ L  L  N+  +  LSG  +  AVVK NAYG G   +A  L     V  F V +  EG
Sbjct: 6   EVHLDRLLYNYRQVEKLSGPKKLIAVVKANAYGHGSVAVARFLQEQTAVSAFAVATYAEG 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           V+LR    Q  I V+      +     +  L+PV+    +L    +L       P+ +++
Sbjct: 66  VQLREAGIQRPIIVMSSTLEEELGRAREFRLMPVVYDFWELERAKEL-----EVPFHVKL 120

Query: 129 DTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQL--ERF 182
           DTG  RLG      QE L     +      +L+ +++H   AD DP       +L  E  
Sbjct: 121 DTGMGRLGFLPSQWQELLCSLRGA------KLAGVMTHFPSADEDPEFTAGQAKLFGEFV 174

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           + L   +  +     +S+ + LG N  F  +R G++LYG          ++ V+  +ARI
Sbjct: 175 KALKGAFPKLWVHCDNSAALPLGLNGLFTHSRVGLALYGSKPFGGYPASLKQVMEVKARI 234

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +++   G  VSYG     +    + V + GYADG P +LSG            G   +
Sbjct: 235 ISVKELPPGHSVSYGRTYTTSGKERVGVVSFGYADGLPRSLSGR-----------GSFIV 283

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G   PI G++ MDMT+  +   ++ + G    + G ++  +++A  +GT  Y+L+ RI 
Sbjct: 284 NGRRCPIRGRVCMDMTVISLEGVVAGK-GGVATVTGLELPFEELARLAGTIPYELMCRIS 342

Query: 363 TRYAKFY 369
            R  + Y
Sbjct: 343 PRVERVY 349


>gi|226939283|ref|YP_002794354.1| DadB [Laribacter hongkongensis HLHK9]
 gi|254802367|sp|C1DBE8|ALR_LARHH RecName: Full=Alanine racemase
 gi|226714207|gb|ACO73345.1| DadB [Laribacter hongkongensis HLHK9]
          Length = 359

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 176/376 (46%), Gaps = 41/376 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  +DL A+++N+    A S  +   AV+K +AYG G E++A AL  A       +S  
Sbjct: 5   IRATLDLAAIRHNYQQAKACSPESFAFAVIKADAYGHGYEQVAAAL--AVWPTVLPSSTS 62

Query: 67  EGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-------YSKLMSC 118
              + LR    +  I +L G         FD   +   + + QLT        +  L   
Sbjct: 63  SRARTLREAGLRQPILLLEGC--------FDRAELEEAARL-QLTVPFHAAHQFDWLKQG 113

Query: 119 GVSHPYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVN 175
            +  P    L+++TG NRLG    EA         +   +L+ +++H A AD DP     
Sbjct: 114 SLPAPLEVMLKLNTGMNRLGFRPDEAPRAAAWLQARNDIRLAGLMTHFATADGDPGI--- 170

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---M 232
           + QL RF   ++   G+ + +A+S+ ++  P    Q  RPGI LYG +   ++S     +
Sbjct: 171 AAQLSRFDE-VNASLGLPSCVANSAALMRHPASRRQYVRPGIMLYGASPFADQSAAELGL 229

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +  EA II ++   AG+ V YG      R   I V A GYADGYP          +P
Sbjct: 230 RPAMRLEADIIGVQSLQAGDAVGYGATFVADRPMRIGVVACGYADGYPRV--------AP 281

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASG 351
           +   G    I G    ++G+++MDM   D+T      VGD + ++G D + +DDVA A+G
Sbjct: 282 A---GTPCAIGGQPARLVGRVSMDMLTIDLTSLPQAGVGDRVTLWGGDGVSIDDVATAAG 338

Query: 352 TTNYDLLVRIGTRYAK 367
           T  Y+L+  +  R  +
Sbjct: 339 TIGYELMCALAPRVPR 354


>gi|293398716|ref|ZP_06642892.1| alanine racemase [Neisseria gonorrhoeae F62]
 gi|291610856|gb|EFF39955.1| alanine racemase [Neisseria gonorrhoeae F62]
          Length = 375

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 180/378 (47%), Gaps = 40/378 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           NEF+R   ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F
Sbjct: 21  NEFMRPLNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGF 78

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V +++EG++LR       I +L G+    E + +   +L P + +  QL     L+S  
Sbjct: 79  AVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRH 135

Query: 120 VSHPYA--LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDP 170
              P    L++D+G +R G        F H+  S    L Q   +      SH +CAD+P
Sbjct: 136 WKKPVKVWLKMDSGMHRTGF-------FPHDYTSAYAALKQSEYVDSIVKFSHFSCADEP 188

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            S +  +Q+E F       +G E SLA+S+ IL  P       R G++LYG +       
Sbjct: 189 ESGMTEIQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDD 247

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V+    RI   R       + YG     ++ + + + A GYADGYP         +
Sbjct: 248 RLKPVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSN 303

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
           SP         + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+
Sbjct: 304 SPVA-------VDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAA 355

Query: 351 GTTNYDLLVRIGTRYAKF 368
           GT  Y+L+  I  + AKF
Sbjct: 356 GTIPYELMCNI--KRAKF 371


>gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
 gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
          Length = 822

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 165/361 (45%), Gaps = 37/361 (10%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L  + +  A+VK  +YG G  ++A  L   GV    V  ++EG+ LR       I VL  
Sbjct: 479 LGPDVKIMAMVKAFSYGSGSFEVANLLQFNGVDYLAVAYIDEGIALRNAGITLPIMVLNP 538

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYALQVDTGFNRLGLSLQEAL 143
                +K++ +  L P I S      + K        ++P  +++D+G +RLG       
Sbjct: 539 EASAFDKLV-EFTLQPEIYSFTLFDEFVKFAQLKNIFNYPIHIKIDSGMHRLGFE----- 592

Query: 144 DFTHNSFNKKLGQ-----LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL-- 196
           DF   +    L Q     +  I SHLA +D  +   +   L++       Y  IE  L  
Sbjct: 593 DFEIETLCDLLEQNQYVHIQSIFSHLAGSD--AEMHDEFTLKQIMVFEKAYHQIEKVLNY 650

Query: 197 ------ASSSGILLGPNYHFQLTRPGISLYGGTDKI-NKSHPMQTVVTAEARIILIRKAL 249
                 A++S I   P   F + R GI LYG    I N+++ +Q V T +  +  ++K  
Sbjct: 651 KVMRHMANTSAITRWPVAQFDMVRLGIGLYGIDSAIKNEANQLQPVATLKTSVSQVKKIK 710

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-SGLDSEHSPSVFLGGKGFIKGYMVP 308
           AGE + Y     L  D  IA   IGYADGY     +G+           GK  IKG +VP
Sbjct: 711 AGETIGYNRNGSLLADGKIATVRIGYADGYLRAFGNGV-----------GKMLIKGVLVP 759

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
            +G ++MDM M D++ ++ ++ GD + +F  + K+++VA    T  Y++L  +  R  + 
Sbjct: 760 TVGNVSMDMCMLDVS-AVEVKEGDEVVVFNEEYKIEEVAKQINTIPYEILTNVSQRVKRV 818

Query: 369 Y 369
           Y
Sbjct: 819 Y 819


>gi|268597531|ref|ZP_06131698.1| alanine racemase [Neisseria gonorrhoeae FA19]
 gi|291043413|ref|ZP_06569134.1| alanine racemase [Neisseria gonorrhoeae DGI2]
 gi|268551319|gb|EEZ46338.1| alanine racemase [Neisseria gonorrhoeae FA19]
 gi|291012649|gb|EFE04634.1| alanine racemase [Neisseria gonorrhoeae DGI2]
          Length = 375

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 180/378 (47%), Gaps = 40/378 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           NEF+R   ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F
Sbjct: 21  NEFMRPLNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGF 78

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V +++EG++LR       I +L G+    E + +   +L P + +  QL     L+S  
Sbjct: 79  AVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRH 135

Query: 120 VSHPYA--LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDP 170
              P    L++D+G +R G        F H+  S    L Q   +      SH +CAD+P
Sbjct: 136 WKKPVKVWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEP 188

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            S +  +Q+E F       +G E SLA+S+ IL  P       R G++LYG +       
Sbjct: 189 ESGMTEIQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDD 247

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V+    RI   R       + YG     ++ + + + A GYADGYP         +
Sbjct: 248 RLKPVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSN 303

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
           SP         + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+
Sbjct: 304 SPVA-------VDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAA 355

Query: 351 GTTNYDLLVRIGTRYAKF 368
           GT  Y+L+  I  + AKF
Sbjct: 356 GTIPYELMCNI--KRAKF 371


>gi|289641127|ref|ZP_06473295.1| alanine racemase [Frankia symbiont of Datisca glomerata]
 gi|289509068|gb|EFD29999.1| alanine racemase [Frankia symbiont of Datisca glomerata]
          Length = 442

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 170/380 (44%), Gaps = 37/380 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A++ +  ++ A +GNA T AVVK + YG G    A A   AG     V  +EEG+ 
Sbjct: 14  VDLDAVRASVATLVARAGNAATMAVVKSDGYGHGMSACARAAVEAGASWLGVAVIEEGLA 73

Query: 71  LRLYTPQARIFVLYGIHPGQ---EKIIFDTNLIPVISSVPQL--TFYSKLMSCGVSHPYA 125
           LR       +F      PG+   + +  D +L    +S P +     +     G      
Sbjct: 74  LRAAGFTVPVFAWL-TAPGEPLADALAADIDL---SASAPWMLAEIAAAARHTGRRARVH 129

Query: 126 LQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L+ DTG  R G +  +     D       + L +++ + SHLA AD P       Q+ RF
Sbjct: 130 LKADTGLGRGGATEADWPSLCDAAAALAAEDLIEVTGVWSHLAFADSPGHPTVRGQIGRF 189

Query: 183 --RTLISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQ 233
                I+   G+      LA+S+  L+ P+  F + RPGIS+YG +       P    ++
Sbjct: 190 ADAVTIAEKTGLRPQVRHLANSAATLVSPDARFDMVRPGISVYGLSPGPQVGSPAALGLR 249

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  AR+ L ++  AG  VSY  +      S + +  +GYADG P       + ++  
Sbjct: 250 PAMTLTARLALAKRVPAGSGVSYAHRYTTAVASTLGLVPLGYADGVPRA-----AGNTAE 304

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
           V L G+         I G + MD  + D+ D   ++ GD + +FG     +    D A A
Sbjct: 305 VLLAGR------RRRIAGTVCMDQFVVDVGDD-PVQAGDQVILFGSGEHGEPTAQDWADA 357

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++ R+G R  + +
Sbjct: 358 LGTINYEIVTRVGVRVPRVH 377


>gi|189025906|ref|YP_001933678.1| alanine racemase [Treponema pallidum subsp. pallidum SS14]
 gi|20141182|sp|Q56346|ALR_TREPA RecName: Full=Alanine racemase
 gi|226711066|sp|B2S3S0|ALR_TREPS RecName: Full=Alanine racemase
 gi|189018481|gb|ACD71099.1| alanine racemase [Treponema pallidum subsp. pallidum SS14]
 gi|291060047|gb|ADD72782.1| alanine racemase [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 377

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 178/400 (44%), Gaps = 56/400 (14%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  N+ L   I L  L++N   + + +  AR    VK +AYG G   +A A  + GV  F
Sbjct: 1   MACNQAL---IHLANLRHNLGEIMSRT-RARVCLPVKADAYGHGACDVAQAALSCGVHSF 56

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLM-- 116
            V  V+E  +LR    +A I  L    P  E+I  + +  +  VIS    +   ++ +  
Sbjct: 57  AVACVQEASQLRAAGVRAPILCLST--PTAEEISSLIEHRVHTVISERAHIALIARALRQ 114

Query: 117 ------SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
                 +CGV     +++DTG  R+G +  EA              L  + +H + AD  
Sbjct: 115 SADTGATCGVH----VKIDTGMGRIGCAPDEACALVQMVCATPGLHLEGVCTHFSVADSV 170

Query: 171 SS---HVNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG- 221
            +       +Q   F   + + +  GI   L   A+S+ +L  P  HF + RPG+  YG 
Sbjct: 171 RAEDLQYTEMQRAHFMHCVQYIRKSGISIPLVHAANSAALLCHPRAHFDMVRPGLLAYGY 230

Query: 222 GTDKINKS-----HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
             + ++ +      P+  +VT   ++  I+K  AG  VSY    +   ++ + +  IGYA
Sbjct: 231 APESVHPAVRSVFLPVMELVT---QVRAIKKIPAGAYVSYQRLWRAHTETHVGILPIGYA 287

Query: 277 DGYPLTLS-GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335
           DG    LS GL       V +GGK +      P++G I MD  + D+   L + VGD + 
Sbjct: 288 DGVMRALSPGLQ------VCIGGKWY------PVVGAICMDQCVVDLGTPLRVTVGDRVT 335

Query: 336 IFGPDIK------LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +FGP          D +A  +GT  Y+LL  IG R  + Y
Sbjct: 336 LFGPQDAGGPGQGADVLASHAGTIPYELLCAIGKRVERVY 375


>gi|218281653|ref|ZP_03488054.1| hypothetical protein EUBIFOR_00621 [Eubacterium biforme DSM 3989]
 gi|218217260|gb|EEC90798.1| hypothetical protein EUBIFOR_00621 [Eubacterium biforme DSM 3989]
          Length = 383

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 172/382 (45%), Gaps = 36/382 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +ID  A+++N   +  L  N +   +VK NAYGLG    A AL   GV  F V+S++E +
Sbjct: 11  EIDYDAIRHNVKEVKKLVKNTKIMGIVKANAYGLGDVACAKALQKCGVDYFGVSSIDEAL 70

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVP---QLTFYSKLMSCGVSHPYA 125
            LR    Q  I +L G  P      + + N++  + S+    +L  Y+K     +     
Sbjct: 71  NLRNAGIQDNILIL-GYTPSMHFHYLHEQNIVQSLVSIEYARELNAYAKENDVKIR--CH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSL--IISHLA---CADDPSSHVNSVQL 179
            +VDTG  R G+  QE      + + + +L  L +  I SH     C D+  +     Q+
Sbjct: 128 CKVDTGMCRTGIVYQEQDKHIEDIYEEYRLENLCVEGIFSHFPVSDCLDEDCTEFTKKQI 187

Query: 180 ERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSH 230
           + F  +I   K  GI+     L +S GIL  P   ++  RPG+   G T     KI  + 
Sbjct: 188 QLFDEVIDLLKSQGIDPGIRHLQNSYGILNYPELEYEYCRPGLLYMGVTSDDHIKIKTNP 247

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
               +++  A + L++    G+ VSYG      + + +A  +IGYADG P  LS      
Sbjct: 248 DFIPIMSMYANVSLVKWIYPGQSVSYGRHFIAEKPTKVATMSIGYADGLPRLLSN----- 302

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                 G +  + G    ++G + MD  M D+T+   ++ GD + I G      + +D +
Sbjct: 303 -----QGFEVLVHGQRCKLIGNLCMDQCMIDVTEVEDVKEGDVVCIVGHQGNEVVTVDQI 357

Query: 347 ALASGTTNYDLLVRIGTRYAKF 368
           +  + T N + L  I +R  + 
Sbjct: 358 SRMAKTINNETLTSISSRVPRL 379


>gi|237748485|ref|ZP_04578965.1| alanine racemase [Oxalobacter formigenes OXCC13]
 gi|229379847|gb|EEO29938.1| alanine racemase [Oxalobacter formigenes OXCC13]
          Length = 359

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 169/367 (46%), Gaps = 36/367 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ A+++N   + +    A+   VVK NAYG G E+   AL +A    F +  +E  + 
Sbjct: 9   IDIAAMQHNLSVVRSTVPRAKIWGVVKANAYGHGLERSVRALNDA--DGFALIEMESAIH 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L G     E  I+   N+   +    Q+    K     +     L+++
Sbjct: 67  LREIGWKKPILLLEGFFYAHELPILARYNIAFAVHCDEQIDMLEK-SRLDLPVDVHLKMN 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVNSV--QL 179
           TG NRLG        F    ++K   +L  I        ++H A ++       SV  QL
Sbjct: 126 TGMNRLG--------FLPAEYSKAYERLKKIPNVREISHMTHFANSEVSGHKKMSVEEQL 177

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVT 237
           +RF +  +   G+  +L++S  ILL P       RPG+ LYGGT   K  + + ++ V+T
Sbjct: 178 KRFDSGSAGLPGVR-NLSNSGAILLHPQLRTDWVRPGVMLYGGTPGGKTAEEYGLKPVMT 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II I+    G+ V YG     T    I V A GYADGYP          +P    G
Sbjct: 237 LSSEIIQIQNINEGDSVGYGSIFTATGPMKIGVVACGYADGYP--------RMAPE---G 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G    ++G+++MDM   D+T      VG  + ++G ++ +D+VA A+GT  Y+L
Sbjct: 286 THVIVDGVKTRLVGRVSMDMITVDLTPVKDAHVGSKVTLWGNELPIDEVAEAAGTVGYEL 345

Query: 358 LVRIGTR 364
           +  +  R
Sbjct: 346 MCALSLR 352


>gi|315651755|ref|ZP_07904760.1| alanine racemase [Eubacterium saburreum DSM 3986]
 gi|315486010|gb|EFU76387.1| alanine racemase [Eubacterium saburreum DSM 3986]
          Length = 392

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 178/379 (46%), Gaps = 35/379 (9%)

Query: 10  KIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           K+DL A+K+N   +  +L  + + AAVVK + YG G   +  +LY   + DFF V ++EE
Sbjct: 10  KVDLDAIKHNLTVTKKSLKKDMKLAAVVKADGYGHG--SVPVSLYIEDIVDFFCVATLEE 67

Query: 68  GVKLRLYTPQARIFVLYGI--HPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           G+ LR +     I +L  I  +  +E I+FD    +  +    ++   +K M  G     
Sbjct: 68  GINLRYHGITKPILILACIPRNSYKESIVFDIRESVFTLEQAEKINEEAKQM--GKKAAI 125

Query: 125 ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            + +DTG NR+G    +++ D      + +  ++  + +H   AD+        Q   F 
Sbjct: 126 HIAIDTGMNRIGFKPTKKSADIIKEINDMENIEIEGVFTHFHSADESDLTSAKEQNLLFT 185

Query: 184 TLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQT 234
             +   H  GI+  +A   +S+GIL      F + R GI++YG    G   +N     + 
Sbjct: 186 NFLHTLHDMGIDPKIAHASNSAGILNRIGTEFDMVRCGITMYGIAPSGEVNLN-GLDYRP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  + +  I++  AGE VSYG      +D  +A  +IGYADGYP  LS          
Sbjct: 245 ALSIYSTVTYIKQINAGECVSYGATFVADKDMRVATISIGYADGYPRDLSN--------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I G    ILGKI MD T+ D++   + ++GD + I G      I +D++   S
Sbjct: 296 --KGYVLIHGVRCNILGKICMDQTIVDVSAVDNAKIGDRVVILGESEGNKITVDELTGDS 353

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y+ +  I  R  + Y
Sbjct: 354 NTFSYEFICGINKRVPRLY 372


>gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38]
 gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38]
          Length = 780

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 175/381 (45%), Gaps = 43/381 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L A+ +N +   + L  + +   +VK   YG G  +IA  L +  V    V   +E
Sbjct: 420 LEINLDAISHNLNFYKSKLKHDTKIMVMVKAFGYGNGGYEIAKLLEHHKVDYLGVAFADE 479

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKL-MSCGVS-HP 123
           G++LR       I VL   +P     + +   NL P I S+  L  + K+     +S +P
Sbjct: 480 GIELRKAGITTPIMVL---NPENSSFRAMIAYNLEPEIYSITGLQAFLKIAQEQNISNYP 536

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF 182
             +++DTG +RLG  + +  +      N    ++  + SHLA +DD   +    +Q +RF
Sbjct: 537 IHIKLDTGMHRLGFEMPQMDELVSLLKNNNFIKIKSVFSHLAASDDKKLNEFTQLQFQRF 596

Query: 183 RTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
             +   Y  I A L+        ++SGI   P    ++ R GI LYG  +   +   ++ 
Sbjct: 597 DEM---YNAIAAVLSYIPIRHILNTSGIFNYPEKQMEMARLGIGLYGIGNSEQELQTLEN 653

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V T +  I  IR+ L GE + Y  +  +T+   +A   IGYADG                
Sbjct: 654 VSTLKTIISQIREVLPGESIGYSRKYSVTKKMKVATIPIGYADGIKRAW----------- 702

Query: 295 FLGGKGFIKGYMV------PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
                G  KGY++       ILG I MDM M D+T+ +S   GD + +FG + K+ ++A 
Sbjct: 703 -----GNEKGYVIINNEKATILGSICMDMMMVDVTN-ISCNTGDEVIVFGKNPKVTEMAS 756

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT  Y++L  I  R  + +
Sbjct: 757 VIGTIPYEILTGISQRVKRIF 777


>gi|153816433|ref|ZP_01969101.1| hypothetical protein RUMTOR_02686 [Ruminococcus torques ATCC 27756]
 gi|145846221|gb|EDK23139.1| hypothetical protein RUMTOR_02686 [Ruminococcus torques ATCC 27756]
          Length = 408

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 173/385 (44%), Gaps = 43/385 (11%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           +IDL A+  N   M + +   AR  AV+K + YG G   IA      + V  + V  +EE
Sbjct: 35  QIDLDAIAYNMEQMKDQIGKEARLIAVIKTDGYGHGAVPIARMFETFSYVWGYAVACIEE 94

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP---- 123
            V LR    +  I VL  + P Q    ++T    +I +  +   Y+K M+ G+S      
Sbjct: 95  AVSLRKEGIKKPILVLGCVFPDQ----YET----MIKNEIRAAVYTKEMAEGMSDEAVRQ 146

Query: 124 -----YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                + +++DTG  R+G  +  E+++            +  + +H A AD+        
Sbjct: 147 GKNAYFHIKIDTGMGRIGFPVNSESVNLIEEISKLPNIHMEGLFTHFAKADEKEKSYTLK 206

Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           Q ERF  +    +     +      +S+GI+  PN    L R GIS YG   +D++ KS+
Sbjct: 207 QHERFLWMKEQLEKRNVDITYYDCDNSAGIIDFPNLKHDLARAGISTYGMYPSDEVQKSN 266

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  ++  + I  +++  AG  +SYGG         IA   +GY DGYP +LS     
Sbjct: 267 VHLKPALSLISHITFVKEVEAGTPISYGGTFVAPEKMKIATIPVGYGDGYPRSLSN---- 322

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   I+G    I+G++ MD  M D+TD       D + + G D    I +++
Sbjct: 323 -------KGSVLIRGKRAKIVGRVCMDQFMVDVTDIPGAAFMDRVVLIGKDGKDEITVEE 375

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           ++  SG  NY+ +  +G R  + YT
Sbjct: 376 LSKLSGRFNYEFVCCLGKRIPRVYT 400


>gi|57650742|ref|YP_186876.1| alanine racemase [Staphylococcus aureus subsp. aureus COL]
 gi|87161019|ref|YP_494673.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195971|ref|YP_500784.1| alanine racemase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151222187|ref|YP_001333009.1| alanine racemase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510282|ref|YP_001575941.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141592|ref|ZP_03566085.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258453219|ref|ZP_05701210.1| alanine racemase [Staphylococcus aureus A5948]
 gi|262049241|ref|ZP_06022116.1| alanine racemase [Staphylococcus aureus D30]
 gi|262052487|ref|ZP_06024685.1| alanine racemase [Staphylococcus aureus 930918-3]
 gi|282923060|ref|ZP_06330745.1| alanine racemase [Staphylococcus aureus A9765]
 gi|284025106|ref|ZP_06379504.1| alanine racemase [Staphylococcus aureus subsp. aureus 132]
 gi|294850555|ref|ZP_06791282.1| alanine racemase [Staphylococcus aureus A9754]
 gi|6647411|sp|Q9ZAH5|ALR1_STAA8 RecName: Full=Alanine racemase 1
 gi|81694088|sp|Q5HED1|ALR1_STAAC RecName: Full=Alanine racemase 1
 gi|123484988|sp|Q2FF55|ALR_STAA3 RecName: Full=Alanine racemase
 gi|172048975|sp|A6QIR5|ALR_STAAE RecName: Full=Alanine racemase
 gi|3850851|emb|CAA76221.1| alr protein [Staphylococcus aureus]
 gi|57284928|gb|AAW37022.1| alanine racemase [Staphylococcus aureus subsp. aureus COL]
 gi|87126993|gb|ABD21507.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203529|gb|ABD31339.1| alanine racemase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374987|dbj|BAF68247.1| alanine racemase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160369091|gb|ABX30062.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859165|gb|EEV82022.1| alanine racemase [Staphylococcus aureus A5948]
 gi|259159608|gb|EEW44654.1| alanine racemase [Staphylococcus aureus 930918-3]
 gi|259162606|gb|EEW47173.1| alanine racemase [Staphylococcus aureus D30]
 gi|269941671|emb|CBI50078.1| alanine racemase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593251|gb|EFB98248.1| alanine racemase [Staphylococcus aureus A9765]
 gi|294822575|gb|EFG39017.1| alanine racemase [Staphylococcus aureus A9754]
 gi|315196997|gb|EFU27339.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS01]
 gi|329314756|gb|AEB89169.1| Alanine racemase 1 [Staphylococcus aureus subsp. aureus T0131]
 gi|329724022|gb|EGG60546.1| alanine racemase [Staphylococcus aureus subsp. aureus 21189]
 gi|329729286|gb|EGG65694.1| alanine racemase [Staphylococcus aureus subsp. aureus 21193]
          Length = 382

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 187/394 (47%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 62  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 116

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 117 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 171

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q +RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 172 ADEPGD-MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 230

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 231 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 289

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 290 RIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 335

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++ VA    T NY++L  +  R  + Y
Sbjct: 336 RESPQ-SVEVVAEKQHTINYEVLCNLSRRLPRIY 368


>gi|331087586|ref|ZP_08336516.1| alanine racemase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330400457|gb|EGG80090.1| alanine racemase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 383

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 170/385 (44%), Gaps = 43/385 (11%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           +IDL A+  N   M + +   AR  AV+K + YG G   IA      + V  + V  +EE
Sbjct: 10  QIDLDAIAYNMEQMKDQIGKEARLIAVIKTDGYGHGAVPIARMFETFSYVWGYAVACIEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP---- 123
            V LR    +  I VL  + P Q + +    +        +   Y+K M+ G+S      
Sbjct: 70  AVSLRKEGIKKPILVLGCVFPDQYETMIKNEI--------RAAVYTKEMAEGMSDEAVRQ 121

Query: 124 -----YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                + +++DTG  R+G  +  E+++            +  + +H A AD+        
Sbjct: 122 GKNAYFHIKIDTGMGRIGFPVNSESVNLIEEISKLPNIHMEGLFTHFAKADEKEKSYTLK 181

Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           Q ERF  +    +     +      +S+GI+  PN    L R GIS YG   +D++ KS+
Sbjct: 182 QHERFLWMKEQLEKRNVDITYYDCDNSAGIIDFPNLKHDLARAGISTYGMYPSDEVQKSN 241

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  ++  + I  +++  AG  +SYGG         IA   +GY DGYP +LS     
Sbjct: 242 VHLKPALSLISHITFVKEVEAGTPISYGGTFVAPEKMKIATIPVGYGDGYPRSLSN---- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   I+G    I+G++ MD  M D+TD       D + + G D    I +++
Sbjct: 298 -------KGSVLIRGKRAKIVGRVCMDQFMVDVTDIPGAAFMDRVVLIGKDGKDEITVEE 350

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           ++  SG  NY+ +  +G R  + YT
Sbjct: 351 LSKLSGRFNYEFVCCLGKRIPRVYT 375


>gi|161870495|ref|YP_001599667.1| alanine racemase [Neisseria meningitidis 053442]
 gi|161596048|gb|ABX73708.1| alanine racemase [Neisseria meningitidis 053442]
          Length = 422

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 182/379 (48%), Gaps = 42/379 (11%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD- 59
           NEF+R   ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL  A + D 
Sbjct: 68  NEFMRPLNVQIRLGNLRHNYQILKEMHG-GKLLAVVKADAYGHGAVRCAFAL--ADLADG 124

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC 118
           F V +++EG++LR       I +L G+    E + +   +L P + +  QL     L+S 
Sbjct: 125 FAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSR 181

Query: 119 GVSHPYA--LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADD 169
               P    L++D+G +R G        F H+  S    L Q   +      SH +CAD+
Sbjct: 182 HWKKPVKVWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADE 234

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           P S +  +Q+E F       +G E SLA+S+ IL  P       R G++LYG +      
Sbjct: 235 PESGMTEIQMEAFDLGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGGD 293

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+    RI   R       + YG     ++ + + + A GYADGYP         
Sbjct: 294 DRLKPVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYP--------R 345

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
            +PS        + G +  ++G+++MDM   ++ D+    +G  ++++G  I ++ VA A
Sbjct: 346 RAPS---NSPVAVDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTININTVAEA 401

Query: 350 SGTTNYDLLVRIGTRYAKF 368
           +GT  Y+L+  I  + AKF
Sbjct: 402 AGTIPYELMCNI--KRAKF 418


>gi|15925060|ref|NP_372594.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927645|ref|NP_375178.1| alanine racemase [Staphylococcus aureus subsp. aureus N315]
 gi|21283723|ref|NP_646811.1| alanine racemase [Staphylococcus aureus subsp. aureus MW2]
 gi|49486864|ref|YP_044085.1| alanine racemase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|148268522|ref|YP_001247465.1| alanine racemase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394586|ref|YP_001317261.1| alanine racemase [Staphylococcus aureus subsp. aureus JH1]
 gi|156980386|ref|YP_001442645.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315700|ref|ZP_04838913.1| alanine racemase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006859|ref|ZP_05145460.2| alanine racemase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794520|ref|ZP_05643499.1| alanine racemase [Staphylococcus aureus A9781]
 gi|258411250|ref|ZP_05681528.1| alanine racemase [Staphylococcus aureus A9763]
 gi|258419766|ref|ZP_05682732.1| alanine racemase [Staphylococcus aureus A9719]
 gi|258438073|ref|ZP_05689452.1| alanine racemase 1 [Staphylococcus aureus A9299]
 gi|258441321|ref|ZP_05690806.1| alanine racemase 1 [Staphylococcus aureus A8115]
 gi|258446985|ref|ZP_05695137.1| alanine racemase [Staphylococcus aureus A6300]
 gi|258449782|ref|ZP_05697882.1| alanine racemase [Staphylococcus aureus A6224]
 gi|258453480|ref|ZP_05701459.1| alanine racemase 1 [Staphylococcus aureus A5937]
 gi|269203705|ref|YP_003282974.1| alanine racemase [Staphylococcus aureus subsp. aureus ED98]
 gi|282895219|ref|ZP_06303435.1| alanine racemase [Staphylococcus aureus A8117]
 gi|282929298|ref|ZP_06336869.1| alanine racemase [Staphylococcus aureus A10102]
 gi|295407616|ref|ZP_06817407.1| alanine racemase [Staphylococcus aureus A8819]
 gi|296275701|ref|ZP_06858208.1| alanine racemase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246613|ref|ZP_06930444.1| alanine racemase [Staphylococcus aureus A8796]
 gi|54036714|sp|P63480|ALR1_STAAN RecName: Full=Alanine racemase 1
 gi|54036715|sp|P63481|ALR1_STAAW RecName: Full=Alanine racemase 1
 gi|54040680|sp|P63479|ALR1_STAAM RecName: Full=Alanine racemase 1
 gi|60389600|sp|Q6G7N9|ALR1_STAAS RecName: Full=Alanine racemase 1
 gi|13701865|dbj|BAB43157.1| alanine racemase [Staphylococcus aureus subsp. aureus N315]
 gi|14247843|dbj|BAB58232.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21205165|dbj|BAB95859.1| alanine racemase [Staphylococcus aureus subsp. aureus MW2]
 gi|49245307|emb|CAG43782.1| alanine racemase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|147741591|gb|ABQ49889.1| alanine racemase [Staphylococcus aureus subsp. aureus JH9]
 gi|149947038|gb|ABR52974.1| alanine racemase [Staphylococcus aureus subsp. aureus JH1]
 gi|156722521|dbj|BAF78938.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788492|gb|EEV26832.1| alanine racemase [Staphylococcus aureus A9781]
 gi|257840005|gb|EEV64471.1| alanine racemase [Staphylococcus aureus A9763]
 gi|257844248|gb|EEV68631.1| alanine racemase [Staphylococcus aureus A9719]
 gi|257848490|gb|EEV72480.1| alanine racemase 1 [Staphylococcus aureus A9299]
 gi|257852365|gb|EEV76290.1| alanine racemase 1 [Staphylococcus aureus A8115]
 gi|257854218|gb|EEV77169.1| alanine racemase [Staphylococcus aureus A6300]
 gi|257856956|gb|EEV79857.1| alanine racemase [Staphylococcus aureus A6224]
 gi|257864352|gb|EEV87101.1| alanine racemase 1 [Staphylococcus aureus A5937]
 gi|262075995|gb|ACY11968.1| alanine racemase [Staphylococcus aureus subsp. aureus ED98]
 gi|282589108|gb|EFB94207.1| alanine racemase [Staphylococcus aureus A10102]
 gi|282762409|gb|EFC02553.1| alanine racemase [Staphylococcus aureus A8117]
 gi|285817735|gb|ADC38222.1| Alanine racemase [Staphylococcus aureus 04-02981]
 gi|294967514|gb|EFG43552.1| alanine racemase [Staphylococcus aureus A8819]
 gi|297176513|gb|EFH35779.1| alanine racemase [Staphylococcus aureus A8796]
 gi|312830422|emb|CBX35264.1| alanine racemase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128410|gb|EFT84419.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727774|gb|EGG64226.1| alanine racemase [Staphylococcus aureus subsp. aureus 21172]
          Length = 382

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 187/394 (47%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 62  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 116

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 117 NISGEQEKKLWLHIKLDTGMGRLGIKDTNTYQEVIEII-----QQYEQLVFEGVFTHFAC 171

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q +RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 172 ADEPGD-MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 230

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 231 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 289

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 290 RIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 335

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++ VA    T NY++L  +  R  + Y
Sbjct: 336 RESPQ-SVEVVAEKQHTINYEVLCNLSRRLPRIY 368


>gi|207723325|ref|YP_002253724.1| alanine racemase protein [Ralstonia solanacearum MolK2]
 gi|206588523|emb|CAQ35486.1| alanine racemase protein [Ralstonia solanacearum MolK2]
          Length = 375

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 164/362 (45%), Gaps = 32/362 (8%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL NN       + ++R  AVVK NAYG G E++   L       F +  ++E V+LR  
Sbjct: 13  ALANNLQVARRHAPDSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLDLDEAVRLRQL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
             Q  + +L G   P    ++    L   +    QL     L    +  P ++Q  ++TG
Sbjct: 71  GWQGPVLLLEGFFKPEDLALVEQYRLTTTVHCEEQLRM---LELARLKGPVSVQLKINTG 127

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLERFRTLI 186
            +RLG +        + +  ++   +S I     ++H + AD P    +  QL  F    
Sbjct: 128 MSRLGFA-----PAAYRAAWERARAISGIGTIVHMTHFSDADGPRGIDH--QLAAFEQAT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
               G EASL++S+  L  P  H    RPG+ LYG    G     +   + + +T ++ +
Sbjct: 181 QGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGMAADIEGTGLMSAMTLKSEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I I+    G  + YG + ++ +   I + A GYADGYP    G    H+P         +
Sbjct: 240 IAIQDLQPGATIGYGSRFQVEQPMRIGIVACGYADGYPRHAPGWGGNHTPV-------LV 292

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+++MDM   D+ +     VG  + ++G  + +D+VA A+GT  Y+L+  + 
Sbjct: 293 DGVRTRMVGRVSMDMITVDLAEVPGARVGTPVTLWGQGLPIDEVAHAAGTVGYELMCALA 352

Query: 363 TR 364
            R
Sbjct: 353 LR 354


>gi|317500186|ref|ZP_07958418.1| alanine racemase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898401|gb|EFV20440.1| alanine racemase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 399

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 170/385 (44%), Gaps = 43/385 (11%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           +IDL A+  N   M + +   AR  AV+K + YG G   IA      + V  + V  +EE
Sbjct: 26  QIDLDAIAYNMEQMKDQIGKEARLIAVIKTDGYGHGAVPIARMFETFSYVWGYAVACIEE 85

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP---- 123
            V LR    +  I VL  + P Q + +    +        +   Y+K M+ G+S      
Sbjct: 86  AVSLRKEGIKKPILVLGCVFPDQYETMIKNEI--------RAAVYTKEMAEGMSDEAVRQ 137

Query: 124 -----YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                + +++DTG  R+G  +  E+++            +  + +H A AD+        
Sbjct: 138 GKNAYFHIKIDTGMGRIGFPVNSESVNLIEEISKLPNIHMEGLFTHFAKADEKEKSYTLK 197

Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           Q ERF  +    +     +      +S+GI+  PN    L R GIS YG   +D++ KS+
Sbjct: 198 QHERFLWMKEQLEKRNVDITYYDCDNSAGIIDFPNLKHDLARAGISTYGMYPSDEVQKSN 257

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  ++  + I  +++  AG  +SYGG         IA   +GY DGYP +LS     
Sbjct: 258 VHLKPALSLISHITFVKEVEAGTPISYGGTFVAPEKMKIATIPVGYGDGYPRSLSN---- 313

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   I+G    I+G++ MD  M D+TD       D + + G D    I +++
Sbjct: 314 -------KGSVLIRGKRAKIVGRVCMDQFMVDVTDIPGAAFMDRVVLIGKDGKDEITVEE 366

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           ++  SG  NY+ +  +G R  + YT
Sbjct: 367 LSKLSGRFNYEFVCCLGKRIPRVYT 391


>gi|319638630|ref|ZP_07993392.1| alanine racemase [Neisseria mucosa C102]
 gi|317400379|gb|EFV81038.1| alanine racemase [Neisseria mucosa C102]
          Length = 352

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 179/371 (48%), Gaps = 35/371 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           L  +I L  L+ N+  +  L GN +  AV+K +AYG G  + A AL  A + D F V +V
Sbjct: 4   LNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHAL--ADIADGFAVATV 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +EGV+LR    +  I +L G+    E    D  +L P I S  QL  ++       +  +
Sbjct: 61  DEGVELRQNGIKNPIVLLEGVFEAAEYADVDRYDLWPAIGSQWQLEAFAHHEWQRPTTVW 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHN-----SFNKKLGQLSLII--SHLACADDPSSHVNSV 177
            L++D+G +R G        F HN     +  K+   +  I+  SH ACAD+P + +  +
Sbjct: 121 -LKMDSGMHRAGF-------FPHNYAAAYTALKQSESVENIVKFSHFACADEPENGMTEM 172

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           QLE F       +G E SLA+S+ IL  P       R G++LYG +   +    ++ V+ 
Sbjct: 173 QLEAFDLACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGSVDERLKPVMR 231

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +R+   R       + YG     ++ + + + A GYADGYP       S +SP     
Sbjct: 232 LTSRVFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----STNSPVA--- 284

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               I G    I+G+++MDM   ++  S    +G  ++++G  I +++VA  +G   Y++
Sbjct: 285 ----IDGKRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVAEVAGMIPYEI 339

Query: 358 LVRIGTRYAKF 368
           L  I  + AKF
Sbjct: 340 LCNI--KRAKF 348


>gi|297545238|ref|YP_003677540.1| alanine racemase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296843013|gb|ADH61529.1| alanine racemase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 385

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 174/388 (44%), Gaps = 49/388 (12%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R +I L  + +N   +    G   +   VVK NAYG G   +A  L   GV    V ++E
Sbjct: 9   RAEIYLDNIAHNLSEVKRWVGKKVKIMGVVKANAYGHGACHVAKVLVENGVCYLGVATIE 68

Query: 67  EGVKLRL-----------YTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
           E ++LR            YTP  QA   +++ I     + +FD N +  +  +       
Sbjct: 69  EALELRECGINIPILVFGYTPLTQAEELIVHNI----TQTVFDINYVEDLEKIA------ 118

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
             ++ G      +++DTG  R+G + L+ A          +  ++  I SH A +D+   
Sbjct: 119 --LNVGKKAKVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKDK 176

Query: 173 HVNSVQLERFRTLISHYK----GIEASLASSSGILLGPNY-HFQLTRPGISLYGG--TDK 225
                Q + F+ L+   K     I     ++SG ++   Y +  + RPGI LYG   +++
Sbjct: 177 SYAEQQFDMFKKLLERLKEKRINIPLKHMANSGAIIDLKYTYLDMVRPGIVLYGSYPSEE 236

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           + +   ++  +  + +I+ I++   G  +SYG      R S IA   +GYADG+   LS 
Sbjct: 237 VKRPLDLRQTMGFKTKIVYIKEVPEGTSISYGKTFITKRKSKIATLPVGYADGFNRLLS- 295

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDI 341
            ++ H           +KG    ++G+I MD TM D+TD   +EVGD + IF    G  I
Sbjct: 296 -NNYHV---------LVKGKYAAVVGRICMDQTMIDVTDIEGVEVGDDVIIFGNQEGEKI 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
             +++A    T  Y++   I +R  + Y
Sbjct: 346 TAEEIAKKLNTIPYEVYCGISSRVPRIY 373


>gi|308198664|pdb|3OO2|A Chain A, 2.37 Angstrom Resolution Crystal Structure Of An Alanine
           Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus
           Col
 gi|308198665|pdb|3OO2|B Chain B, 2.37 Angstrom Resolution Crystal Structure Of An Alanine
           Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus
           Col
          Length = 385

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 187/394 (47%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 5   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 64

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 65  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 119

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 120 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 174

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q +RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 175 ADEPGD-MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 233

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 234 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 292

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 293 RIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 338

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++ VA    T NY++L  +  R  + Y
Sbjct: 339 RESPQ-SVEVVAEKQHTINYEVLCNLSRRLPRIY 371


>gi|83748582|ref|ZP_00945602.1| Alanine racemase [Ralstonia solanacearum UW551]
 gi|207743279|ref|YP_002259671.1| alanine racemase protein [Ralstonia solanacearum IPO1609]
 gi|83724790|gb|EAP71948.1| Alanine racemase [Ralstonia solanacearum UW551]
 gi|206594676|emb|CAQ61603.1| alanine racemase protein [Ralstonia solanacearum IPO1609]
          Length = 375

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 164/362 (45%), Gaps = 32/362 (8%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL NN       + ++R  AVVK NAYG G E++   L       F +  ++E V+LR  
Sbjct: 13  ALANNLQVARRHAPDSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLDLDEAVRLRQL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
             Q  + +L G   P    ++    L   +    QL     L    +  P ++Q  ++TG
Sbjct: 71  GWQGPVLLLEGFFKPEDLALVEQYRLTTTVHCEEQLRM---LELARLKGPVSVQLKINTG 127

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLERFRTLI 186
            +RLG +        + +  ++   +S I     ++H + AD P    +  QL  F    
Sbjct: 128 MSRLGFA-----PAAYRAAWERARAISGIGTIVHMTHFSDADGPRGIDH--QLAAFERAT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
               G EASL++S+  L  P  H    RPG+ LYG    G     +   + + +T ++ +
Sbjct: 181 QGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGMAADIEGTGLMSAMTLKSEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I I+    G  + YG + ++ +   I + A GYADGYP    G    H+P         +
Sbjct: 240 IAIQDLQPGATIGYGSRFQVEQPMRIGIVACGYADGYPRHAPGWGGNHTPV-------LV 292

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+++MDM   D+ +     VG  + ++G  + +D+VA A+GT  Y+L+  + 
Sbjct: 293 DGVRTRMVGRVSMDMITVDLAEVPGARVGTPVTLWGQGLPIDEVAHAAGTVGYELMCALA 352

Query: 363 TR 364
            R
Sbjct: 353 LR 354


>gi|240167811|ref|ZP_04746470.1| alanine racemase [Mycobacterium kansasii ATCC 12478]
          Length = 392

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 182/388 (46%), Gaps = 54/388 (13%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A A   AG  +  V +V+E + 
Sbjct: 18  VDLGAVEHNVRVLREHAGSAQVMAVVKADGYGHGATRVAQAALAAGAAELGVATVDEALA 77

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIP----VISSVPQL-TFYSKLMSCGVSH 122
           LR   +  P     VL  +HP    I F   L+      +SS  QL      +   G + 
Sbjct: 78  LRADGITAP-----VLAWLHP--PGIDFGPALVADVEIAVSSTRQLDELLDAVARTGRTA 130

Query: 123 PYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             +++VDTG NR G+      E L     +  +   +L  ++SHL  AD P   +N +Q 
Sbjct: 131 TVSVKVDTGLNRNGVPPALYPEMLARLRQAAAEHAIRLRGLMSHLVYADAPQQPINDIQA 190

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230
           +RFR ++S+ +  G+    A L++SS  +  P+    L RPGI++YG +    +      
Sbjct: 191 QRFRDMLSYAREEGVTFEVAHLSNSSATMARPDLTLDLVRPGIAVYGLSPVPERGEMGLV 250

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P  TV  A   + LI+   AGE VSYG       D+ +A+  IGYADG            
Sbjct: 251 PAMTVKCA---VALIKSVPAGEGVSYGHTWIAPHDTTVALLPIGYADG------------ 295

Query: 291 SPSVF--LGGK--GFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK--- 342
              VF  LGG+    I G   P +G+I MD  + D+    + +  GD   +FGP  +   
Sbjct: 296 ---VFRSLGGRLEVLINGRRRPGVGRICMDQFVVDLGPGPVDVAEGDEAILFGPGARGEP 352

Query: 343 -LDDVALASGTTNYDLLVRIGTRYAKFY 369
              D A   GT +Y+++     R ++ Y
Sbjct: 353 TAQDWADLVGTIHYEVVTSPRGRISRTY 380


>gi|304379251|ref|ZP_07361990.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|304342110|gb|EFM08010.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|320140759|gb|EFW32611.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143734|gb|EFW35511.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 390

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 187/394 (47%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 10  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 70  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 124

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 125 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 179

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q +RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 180 ADEPGD-MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 238

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 239 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 297

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 298 RIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 343

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++ VA    T NY++L  +  R  + Y
Sbjct: 344 RESPQ-SVEVVAEKQHTINYEVLCNLSRRLPRIY 376


>gi|261363843|ref|ZP_05976726.1| alanine racemase [Neisseria mucosa ATCC 25996]
 gi|288568436|gb|EFC89996.1| alanine racemase [Neisseria mucosa ATCC 25996]
          Length = 352

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 178/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L  +I L  L++N+ ++  + G  +  AV+K +AYG G  + A AL       F V +V+
Sbjct: 4   LNARIRLDNLRHNYQTLKQIHG-GKMLAVIKADAYGHGAVRCAHALSEI-ADGFAVATVD 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E V+LR       I +L G+    E    D  NL P + S  QL     L++    +P  
Sbjct: 62  EAVELRESGITNPIVLLEGVFEAAEYATVDKYNLWPGVGSQWQL---EALIAHHWQNPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFN-----KKLGQLSLII--SHLACADDPSSHVNS 176
             L++D+G +R G        F HN  +     K+   +  I+  SH ACAD+P + +  
Sbjct: 119 VWLKMDSGMHRAGF-------FPHNYTSAYTALKQCKHVDSIVKFSHFACADEPDNGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +QLE F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 MQLEAFDLACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              +R+   R       V YG     ++ + + + A GYADGYP       S +SP    
Sbjct: 231 RLTSRVFGERVLQPHSPVGYGATFYTSKSTRVGLIACGYADGYPRRA----STNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                ++G    I+G+++MDM   ++ D+    +G  ++++G  + +++VA A+G   Y+
Sbjct: 285 -----VEGKRSRIIGRVSMDMITVEL-DASQEGLGAEVELWGDVVNINEVAEAAGMIPYE 338

Query: 357 LLVRIGTRYAKF 368
           +L  +  + AKF
Sbjct: 339 ILCNV--KRAKF 348


>gi|297210110|ref|ZP_06926503.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300910473|ref|ZP_07127925.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70]
 gi|296885310|gb|EFH24250.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300888315|gb|EFK83506.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 390

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 187/394 (47%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 10  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 70  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 124

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 125 NISGEQEKKLWLHIKLDTGMGRLGIKDTNTYQEVIEII-----QQYEQLVFEGVFTHFAC 179

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q +RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 180 ADEPGD-MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 238

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 239 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 297

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 298 RIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 343

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++ VA    T NY++L  +  R  + Y
Sbjct: 344 RESPQ-SVEVVAEKQHTINYEVLCNLSRRLPRIY 376


>gi|188501472|gb|ACD54604.1| alanine racemase-like protein [Adineta vaga]
          Length = 379

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 173/383 (45%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVE 66
           ++IDL A++ N     ++ +   +   +VK +AYG+G +KI        + D+  V    
Sbjct: 1   MRIDLNAMRCNLEQFCSIVASTTKMMMMVKASAYGVGIKKIGKWAEKTRLIDYLAVVYTA 60

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP---QLTFYSKLMSCGVSHP 123
           EGV+LR       I V+  I     KI  + NL  VI S+    QL  + +  +   S P
Sbjct: 61  EGVELRKANIHLPIMVI-NIDKEDFKICQEYNLELVIYSISLLQQLMIWLEKNTQICSFP 119

Query: 124 -YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
              ++++TG NRLGL + E   F +  F     +L +  I +H+A +DDP    +    E
Sbjct: 120 SIHVKINTGMNRLGLDIDEIPAFLNILFEYTRCRLMVKSIYTHVAASDDPQE--DQYTAE 177

Query: 181 RFRTLISHYKGIEASL--------ASSSGILLGPNYHFQLTRPGISLYGGTDK-INKSHP 231
           + R  +S    +E  L         +S GIL  PN HF + R G  LYG  +  +     
Sbjct: 178 QTRAYLSSVHILETGLGYTVLKHMCNSMGILRHPNLHFDMVRVGGGLYGAAECFLPYMST 237

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +   ++  + +  +R       + Y  + ++ RDS I +  +GYADG    L    + H 
Sbjct: 238 LLPAISMMSTVTQVRHVKKDSTIGYNRRGRVNRDSFIGIIRLGYADGLRRQLG---NGH- 293

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-----SLSIEVGDYIQIFGPDIKLDDV 346
                 G  +I    VP +G I MD  M D+TD        +E  + ++IFG    ++++
Sbjct: 294 ------GHVWIHDCQVPFIGSICMDFAMIDLTDVPVDNKYELE-NESVEIFGSHNNIEEI 346

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  S T  +D +  IG R  + Y
Sbjct: 347 ARCSDTIVFDFISTIGKRVKRVY 369


>gi|148652591|ref|YP_001279684.1| alanine racemase [Psychrobacter sp. PRwf-1]
 gi|172048511|sp|A5WDJ3|ALR_PSYWF RecName: Full=Alanine racemase
 gi|148571675|gb|ABQ93734.1| alanine racemase [Psychrobacter sp. PRwf-1]
          Length = 374

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 175/382 (45%), Gaps = 49/382 (12%)

Query: 11  IDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNA---GVQDFF----- 61
           +D  AL +N +  ++ +    +  A+VK +AYG G     PAL +A   GV  F      
Sbjct: 8   LDSKALTHNLNCVIDTVPDTTKVLAMVKADAYGHGIAHCLPALKDADGLGVACFTEAQHI 67

Query: 62  -------VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
                  +  + EGV       Q+       I   Q+++ +  N +P  +S P  T + K
Sbjct: 68  RELGWDKILVLIEGVFSETEWQQSIEAQCQSIIHHQDQVQWALNHLPPENS-PCRTVWLK 126

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L             +TG NRLG    E  D   +  +   G   ++ SH A AD P+   
Sbjct: 127 L-------------NTGMNRLGFESDELGDVAQSLVDA--GYELILTSHFANADAPNHPS 171

Query: 175 NSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           N+ Q++ F   +   +      I+ASL +S+GIL     HF   RPGI LYG +     S
Sbjct: 172 NAKQIDTFTQALQQLREQVDPSIKASLCNSAGILNFKACHFDWVRPGIMLYGSSPVEGVS 231

Query: 230 HPM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
             M   + V++ +A ++ I    AG  V YG +    R  +  + +IGY DGYP  + G 
Sbjct: 232 AQMLKLKPVMSFKASLMAIHNIAAGTSVGYGSRFVANRPIVKGIVSIGYGDGYPRVVDG- 290

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDI---K 342
               S  V +   G    Y  P++G++ MDM   D+TD  + +VG  + ++G P++    
Sbjct: 291 ----SAWVSVQLAGEHSSYKCPVIGRVAMDMIAIDLTDVPNPKVGSQVMLWGDPELGAPS 346

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           +D++A ++ T  Y+LL R+  R
Sbjct: 347 VDEIAESAHTLGYELLCRVTQR 368


>gi|209518012|ref|ZP_03266843.1| alanine racemase [Burkholderia sp. H160]
 gi|209501516|gb|EEA01541.1| alanine racemase [Burkholderia sp. H160]
          Length = 356

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 155/339 (45%), Gaps = 28/339 (8%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AVVK NAYG G  +  P L       F +  +EE VKLR       I +L G   P    
Sbjct: 32  AVVKANAYGHGLARAFPGLR--ATDGFGLLDLEEAVKLRELGWAGPILLLEGFFRPTDID 89

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTGFNRLGLSLQE-ALDFTHNS 149
           +I   +L   + S  QL     L    +S P  +Q  ++TG NRLG ++++    +    
Sbjct: 90  VIDRYSLTTALHSDEQLRM---LEMARLSKPVNIQLKMNTGMNRLGYTVEKFRAAWERAR 146

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
             + +GQ++L+ +H + AD      +  Q+E F        G   SL++S+  L  P  H
Sbjct: 147 ACQGVGQITLM-THFSDADGERGIAH--QMEAFERGAQGIAGAR-SLSNSAATLWHPQAH 202

Query: 210 FQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
           F   RPGI LYG    G     +   +Q  +T  + +I ++    G  V YG        
Sbjct: 203 FDWVRPGIMLYGASPSGVTAAIEGTGLQPAMTLTSELIAVQTLGEGSSVGYGSTFTARGS 262

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
             I V A GYADGYP     +  E +P +       + G    I+G+++MDM   D+T  
Sbjct: 263 MRIGVVACGYADGYPR----VAPEGTPVI-------VDGVRTRIVGRVSMDMLTVDLTPV 311

Query: 326 LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +  VG  ++++G  + +DDVA   GT  Y+L+  +  R
Sbjct: 312 PTANVGSRVELWGTALPIDDVAQVCGTIGYELMCAVAPR 350


>gi|302751952|gb|ADL66129.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus str.
           JKD6008]
          Length = 372

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 182/385 (47%), Gaps = 51/385 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   F V +++E 
Sbjct: 1   MNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEA 60

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA-- 125
           ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +   +S      
Sbjct: 61  IELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK-NISGEQEKK 115

Query: 126 ----LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVN 175
               +++DTG  RLG+    + QE ++       ++  QL    + +H ACAD+P   + 
Sbjct: 116 LWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFACADEPGD-MT 169

Query: 176 SVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKS 229
           + Q +RF+ +++     E     +S+G LL         RPGISLYG        +  K 
Sbjct: 170 TEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKV 229

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G    
Sbjct: 230 H-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQG---- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-----GPDIKLD 344
                F+     + G+   ++G++ MD T+  + D   ++ GD + +       P   ++
Sbjct: 285 ----SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQ-SVE 333

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            VA    T NY++L  +  R  + Y
Sbjct: 334 VVAEKQHTINYEVLCNLSRRLPRIY 358


>gi|239980001|ref|ZP_04702525.1| alanine racemase [Streptomyces albus J1074]
          Length = 402

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 168/382 (43%), Gaps = 32/382 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++IDL AL+ N  ++ A +  A   AVVK +AYG G  + A A   AG     V +  E
Sbjct: 4   RVEIDLGALRANVRALRARTDGAAYMAVVKADAYGHGMVRCAEAALQAGATWVGVATPYE 63

Query: 68  GVKLRL--YTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            ++LR    TP+ AR+        G  +   + +L   +S +  L   ++          
Sbjct: 64  ALELRAAGVTPERARVMCWLWTPGGPWREGIEADLDMSVSDLWALAEVTEAARATGRRAR 123

Query: 125 -ALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L+ DTG  R G       + +D    +  + L  ++ + SH ACAD+P     + QL 
Sbjct: 124 IQLKADTGLGRNGCQPADWADLVDRARAAEREGLVTVTGLWSHFACADEPGHPSIAAQLA 183

Query: 181 RFRTLI--SHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHP 231
           RF  +   ++  G+      +A+S  +L  P   F L RPGI++YG +          H 
Sbjct: 184 RFDEMSGRAYAGGLRPEVRHMANSPAVLTLPEARFDLVRPGIAMYGLSPAPELGTPADHG 243

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T  A + L++    G  VSYG        + + +  +GY DG P   SG      
Sbjct: 244 LRPVMTLAAPLALVKHVPGGHGVSYGHHYVTAGPTTLGLVPLGYGDGVPRHASG------ 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   + G    + G+I MD  + D+      E G    +FGP    +   +D A
Sbjct: 298 -----AGPVLVDGKWRTVAGRIAMDQFVVDLGGETPPE-GTEAVLFGPGDRGEPGAEDWA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
            A+GT  Y+++ RIG R  + +
Sbjct: 352 RAAGTIGYEIVTRIGGRVPRVH 373


>gi|108803647|ref|YP_643584.1| alanine racemase [Rubrobacter xylanophilus DSM 9941]
 gi|108764890|gb|ABG03772.1| alanine racemase [Rubrobacter xylanophilus DSM 9941]
          Length = 365

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 170/367 (46%), Gaps = 35/367 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL A+++N  ++   S   R  AVVK +AYG G   +A A    G     V +  EG 
Sbjct: 10  EVDLGAVRHNVRTLRRRSRAPRLMAVVKADAYGHGAVPVARAALAGGADSLAVATAGEGA 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR    +A + V   + P   +      L     SVP      ++ + G+     L+VD
Sbjct: 70  ELRRAGIRAPVLVFGDLTPEGLRAAARERLAVSAHSVPSA---RRIAASGLDLEVHLKVD 126

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQL-SLIISHLACAD-DPSSHVNSVQLERFRTLIS 187
           TG NR GL   E       +  K LG+    + +HLACAD DP +     QL  F ++++
Sbjct: 127 TGMNRWGLEPGEV-----GAALKALGRTPDGVYTHLACADSDPEA--TGRQLALFDSVLA 179

Query: 188 H--YKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEAR 241
              + G  A  A+S+G L  P  H+   RPGI+LYG    G      +  ++  +  ++ 
Sbjct: 180 AHPFGGALAHAANSAGTLWHPGSHYGCVRPGIALYGLHPAGDAGDPAAEGLRPALALKSY 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  +R+   GE VSYG   +     L A   +GYADGY   LSG             +  
Sbjct: 240 VAAVRRLEPGEGVSYGLTFRAPEPMLAATVPVGYADGYRRALSGR-----------AEAL 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           I+G   P+LG+++MD  +F       + VGD + + G      ++ +++A  +GT NY++
Sbjct: 289 IRGRRRPLLGRVSMDACVF--AADREVRVGDEVVLLGEQGGGAVRAEELAARAGTINYEI 346

Query: 358 LVRIGTR 364
              +  R
Sbjct: 347 TTGLNPR 353


>gi|313112921|ref|ZP_07798567.1| alanine racemase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624826|gb|EFQ08135.1| alanine racemase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 400

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 175/388 (45%), Gaps = 44/388 (11%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL++N+ ++ A +G+    AVVK ++YG G  + A      G     V+ + E V
Sbjct: 13  EIDLDALRHNFRAVKARAGDLPLCAVVKADSYGHGAVQCARVFAQEGAAWLAVSCLTEAV 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQV 128
           +LR       I +L  + P   + +   ++     S  Q     +  +  G      L+ 
Sbjct: 73  QLRQDGQTLPILILGHVQPEYAQTLIHEDITVACYSTEQAQNLSAAAVKAGGRVKIHLKA 132

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-------QLSLIISHLACADDPSSHVNSVQLER 181
           DTG  R+G +L+   D    +  + L        +++ +  H + ADD +    +   E+
Sbjct: 133 DTGMGRIGFALRTDFD---AAIREMLAVCELPGLEMTGLFQHFSVADDTAEENVAYTAEQ 189

Query: 182 FRTLISHYKGIEAS--------LASSSGILLGPNY------HFQLTRPGISLYG--GTDK 225
               +  +  ++A+          +S+G++L P++         + RPGI LYG   +D+
Sbjct: 190 HALFVRAFHALKAAGREPQTVHCDNSAGVMLHPDWPEGLARERCMARPGIILYGYDPSDE 249

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +      + V+T +  + ++++   G+  SYG +    + +L+A    GYADGYP  LS 
Sbjct: 250 VRFGQ-FRPVMTLKTVVSMVKEMQPGQSASYGRRFTADKPTLVATLCTGYADGYPRQLS- 307

Query: 286 LDSEHSPSVFLGGKGFIK--GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK- 342
                       GKG ++  G   P+LG++ MD  M D+T    I  GD   ++G  +  
Sbjct: 308 -----------CGKGIVEIHGKACPVLGRVCMDQMMVDVTGIPDIHEGDEAILWGGSVSD 356

Query: 343 -LDDVALASGTTNYDLLVRIGTRYAKFY 369
             + +A  + T +Y++L  +  R  + Y
Sbjct: 357 TAETIARKTDTISYEVLCGVSRRVPRVY 384


>gi|295697553|ref|YP_003590791.1| alanine racemase [Bacillus tusciae DSM 2912]
 gi|295413155|gb|ADG07647.1| alanine racemase [Bacillus tusciae DSM 2912]
          Length = 375

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 162/382 (42%), Gaps = 40/382 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL+A+++N  S   L+ +A   AVVK + YG G   +A A   AG +   V  +EEG+
Sbjct: 13  EVDLSAIRHNVASFRQLTRDAEIMAVVKADGYGHGAVPVAKAALEAGARRLAVARLEEGL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQ---------EKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            LR    +  I +L  I PG          E  +FD   IP +++  +          GV
Sbjct: 73  ALRKAGIRVPILILGWIDPGTARELVAGDLEVAVFDPAHIPPLAAAAREVH----KRAGV 128

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                +++DTG  R+G   + +AL +          ++    +H A AD         Q 
Sbjct: 129 H----IKIDTGMGRIGWRDMDQALKWAAELNRVPEVEIRGTFTHFAAADAEDLTHARGQW 184

Query: 180 ERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
           +RF   +     +G+   L   A+++  L  P  H+   R GI LYG         S  +
Sbjct: 185 KRFDRWVKSLESQGMRPPLIHAANTAAALSLPEAHYDALRVGIGLYGYLPNPGWKGSVVL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +   AR++ ++    G  +SYG   +      I   A+GY DG    LS        
Sbjct: 245 RPALRWMARLVYVKWVEPGAAISYGCTYRAPARRRIGTVAVGYGDGLRRGLSN------- 297

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G   + G   PI+G++ MD TM D+T+      GD + + G D       DD A 
Sbjct: 298 ----AGYMLVHGRRAPIVGRVCMDQTMVDLTNIPEARSGDVVTVLGDDGDESWTADDHAR 353

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
              T +Y++L  IG R  + Y 
Sbjct: 354 LLDTISYEILCGIGKRVPRRYV 375


>gi|78189593|ref|YP_379931.1| alanine racemase region [Chlorobium chlorochromatii CaD3]
 gi|78171792|gb|ABB28888.1| alanine racemase [Chlorobium chlorochromatii CaD3]
          Length = 366

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 174/373 (46%), Gaps = 31/373 (8%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L+ N  ++ A L+G A    +VK NAYG     +A  L   G+ +F V ++ E +
Sbjct: 6   ISLEHLRGNVRALQAHLNGRAHIMGIVKANAYGHNVHFVASTLETCGIHNFGVANIHEAL 65

Query: 70  KLR----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPY 124
           +L+    L  P A I       P       +  +   ++     TF  ++ ++  +  P 
Sbjct: 66  ELKQGGALQKP-ATIIAFASPLPSHLPYFIEHGI--TMTLCDHATFVAARDIAAALERPL 122

Query: 125 ALQV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + V  D+G  RLG++  EA+            +L+ + +H A +  P+S  +  QL  F
Sbjct: 123 QVHVKIDSGMGRLGVAPHEAMALLQAVDASPFLELTGVYTHFADSATPNSFTHQ-QLAIF 181

Query: 183 RTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTV 235
           +T+ + Y     + I    A+S  +L        + RPGI LYG   + +      +Q V
Sbjct: 182 KTIAAEYEHAAQRTICKHTANSGALLSLQASWCDMVRPGILLYGYHPSQECPTQLNVQPV 241

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +A+++ I+K  AG  +SY    +   +  IA  A GYADGY   LS      + +V 
Sbjct: 242 MQVQAKVMFIKKVAAGTSISYNRTWQAPTERFIATIAAGYADGYHRLLSN-----NAAVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTN 354
           + GK +      P +G +TMD  M D+  S S++VGD   +FG D +  +++A  + T +
Sbjct: 297 INGKRY------PQVGTVTMDQIMVDLGSSHSVQVGDSAVLFGWDTLSANELAAQAHTIS 350

Query: 355 YDLLVRIGTRYAK 367
           Y++L  +  R  +
Sbjct: 351 YEMLCAVSARVKR 363


>gi|220918668|ref|YP_002493972.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956522|gb|ACL66906.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 395

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 156/373 (41%), Gaps = 29/373 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL +N   + A +  AR  AVVK NAYG G      A   AG     V  V+E  
Sbjct: 19  EIDLDALAHNVRLLAARASPARLYAVVKANAYGHGAVACGRAALEAGAHGLAVVCVDEAE 78

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQV 128
           +LR    +A + V+          +    L P + ++  +   S +    G   P  L++
Sbjct: 79  ELRRAGVEAPLLVIGNTPASDAARVVALRLRPAVGAMDLVEALSAEARRRGAEVPIHLEL 138

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           ++G NR GL     +     +      ++  + +H A A++        Q E  R     
Sbjct: 139 ESGLNRHGLPPDALVALAERARALPGLRVEGLFTHFAAAEEGDQRFTRAQFEVLRETSRR 198

Query: 189 YKGI-EASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHPMQTVVTAEA 240
              + E   ++S+ ILL      +  R G+SLYG       GTD       ++ V++  A
Sbjct: 199 LPWVPERHCSASASILLDHEMALEAVRGGLSLYGYRPAPWCGTDA-----DLRPVMSLRA 253

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  +     G  V YG      R + +A+   GYADGY  +                + 
Sbjct: 254 RVARVSDVDRGATVGYGRTWAANRPTRVALVMCGYADGYRRSFGNRT-----------QV 302

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            + G   P++G++ MDM M D+T    +  GD + + G D    +  DD+A  + T +++
Sbjct: 303 LVHGRRAPVVGRVAMDMCMVDVTAVPGVAPGDVVTLIGRDGDERVDADDLATIADTISWE 362

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 363 ILAGISARVPRLY 375


>gi|258405606|ref|YP_003198348.1| alanine racemase [Desulfohalobium retbaense DSM 5692]
 gi|257797833|gb|ACV68770.1| alanine racemase [Desulfohalobium retbaense DSM 5692]
          Length = 390

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 168/390 (43%), Gaps = 48/390 (12%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+ +N   + NA+    +  AVVK NAYG G  ++A A   AG     V  V EG
Sbjct: 9   EIDLEAIAHNISEIRNAVGFGPQIMAVVKANAYGHGAVEVAQASLRAGASWLGVARVAEG 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQ 127
           ++LR     A I VL    P     +   +L   +S +      ++   +   +    L+
Sbjct: 69  IELREAGIAAPILVLGTSPPECASELLAWDLRQTVSGLDDARALARHARNQDKTLQVHLK 128

Query: 128 VDTGFNRLGLSLQEAL--DFTHNSFN----KKLGQLSL--IISHLACADDPSSHVNSVQL 179
           VDTG  RLGL     L  DF          ++L  ++L  I +H ACAD       S Q 
Sbjct: 129 VDTGMGRLGLLAGPELGGDFDAAGEEVVAIQQLSGIALEGIFTHFACADSRDKSSASRQW 188

Query: 180 ERF-------------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
           +RF             R  + H        A+S+ I+  P  H  L R GI LYG     
Sbjct: 189 QRFTDFLETLDTRSLPRIPVRHA-------ANSASIIDLPRTHLDLVRAGIMLYGLYPSA 241

Query: 227 NKSHP---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
              H    ++  +T +ARI  ++   AG  VSYG        + IA   +GYADGY   L
Sbjct: 242 EVDHAGVRLKPAMTVKARISQVKDVPAGFCVSYGSTYTTPAPTRIATVPVGYADGYTRLL 301

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
           S     H           + G  VP++G++ MD T+ D+     +  GD + + G     
Sbjct: 302 S--SQAHM---------VVHGQRVPVVGRVCMDQTLLDVGGLPEVAAGDEVVLLGSQGEA 350

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +  D++A  +GT NY+++  +  R  + +
Sbjct: 351 CVSADELAELTGTINYEIVSTLMARVPRIF 380


>gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 821

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 172/380 (45%), Gaps = 39/380 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL  + +N +   A L    +T  +VK  AYG    +IA  L    V    V   +E
Sbjct: 462 LEIDLNKITHNLNFYRARLKPGVKTMVMVKAFAYGSSSHEIANWLEFQNVDYLAVAYADE 521

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           GV LR +  Q  I V+    P   +++   NL P + S    T +    S   +H   L+
Sbjct: 522 GVILRQHGIQLPIMVM-NPDPRSFELLHQYNLEPELYSE---TIFKDYASYTRNHKSLLK 577

Query: 128 V----DTGFNRLGLSLQE----ALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQ 178
           V    DTG +RLG    E     L   HN   K    ++ I SHLA +D+   +  ++ Q
Sbjct: 578 VHLKLDTGMHRLGFEAHEIEQLQLLLRHNPQLK----VASIFSHLAASDEAMHNGFSAQQ 633

Query: 179 LERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
              F+ L         YK I   L +S GI   P+Y F + R GI LYG       S  +
Sbjct: 634 AMSFKKLAESLVDFLGYKPI-LHLLNSPGISRFPDYQFDMVRLGIGLYGVDPTGIYSGQL 692

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS-GLDSEHS 291
           Q+V T +  I  ++    GE + Y  +     D   A  +IGYADG+    S G+     
Sbjct: 693 QSVSTLKTVISQVKHIKKGETIGYARRGVANEDMKTATISIGYADGFNRKFSQGI----- 747

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 GK  I G + P++G + MDMTM ++T+ +  + GD + +FG    + D+A A  
Sbjct: 748 ------GKVLINGILAPVIGNVCMDMTMVEVTN-IDCKAGDEVIVFGEGPNISDMASAID 800

Query: 352 TTNYDLLVRIGTRYAK-FYT 370
           T  Y++L  I  R  + FYT
Sbjct: 801 TIPYEILTNISERVKRVFYT 820


>gi|295676844|ref|YP_003605368.1| alanine racemase [Burkholderia sp. CCGE1002]
 gi|295436687|gb|ADG15857.1| alanine racemase [Burkholderia sp. CCGE1002]
          Length = 356

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 156/339 (46%), Gaps = 28/339 (8%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AVVK NAYG G  ++ P L       F +  +EE VKLR       I +L G   P    
Sbjct: 32  AVVKANAYGHGLARVFPGLR--ATDGFGLLDLEEAVKLRELGWAGPILLLEGFFRPTDID 89

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTGFNRLGLSLQE-ALDFTHNS 149
           +I   +L   + S  QL     L    +S P  +Q  ++TG NRLG ++++    +    
Sbjct: 90  VIDRYSLTTALHSDEQLRM---LEMARLSKPVNIQLKMNTGMNRLGYTVEKFRAAWERAR 146

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
             + +GQ++L+ +H + AD      +  Q+E F        G   SL++S+  L  P  H
Sbjct: 147 ACQGVGQITLM-THFSDADAERGIAH--QMEAFERGAQGIAGAR-SLSNSAATLWHPEAH 202

Query: 210 FQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
           F   RPGI LYG    G         +Q  +T  + +I ++    G  V YG        
Sbjct: 203 FDWVRPGIILYGASPSGVTAAIDGTGLQPAMTLASELIAVQTLGEGSSVGYGSTFTARAP 262

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
             I V A GYADGYP     +  E +P +       + G    I+G+++MDM   D+T  
Sbjct: 263 MRIGVVACGYADGYPR----VAPEGTPVI-------VDGVRTRIVGRVSMDMLTVDLTPV 311

Query: 326 LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +  VG  ++++G  + +D+VA A GT  Y+L+  +  R
Sbjct: 312 PTANVGSRVELWGTALPIDNVAQACGTIGYELMCAVAPR 350


>gi|30262102|ref|NP_844479.1| alanine racemase [Bacillus anthracis str. Ames]
 gi|47527372|ref|YP_018721.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184943|ref|YP_028195.1| alanine racemase [Bacillus anthracis str. Sterne]
 gi|165870205|ref|ZP_02214861.1| alanine racemase [Bacillus anthracis str. A0488]
 gi|167633047|ref|ZP_02391373.1| alanine racemase [Bacillus anthracis str. A0442]
 gi|167638340|ref|ZP_02396617.1| alanine racemase [Bacillus anthracis str. A0193]
 gi|170686461|ref|ZP_02877682.1| alanine racemase [Bacillus anthracis str. A0465]
 gi|170706003|ref|ZP_02896465.1| alanine racemase [Bacillus anthracis str. A0389]
 gi|177650850|ref|ZP_02933747.1| alanine racemase [Bacillus anthracis str. A0174]
 gi|190568000|ref|ZP_03020911.1| alanine racemase [Bacillus anthracis Tsiankovskii-I]
 gi|227815101|ref|YP_002815110.1| alanine racemase [Bacillus anthracis str. CDC 684]
 gi|229604370|ref|YP_002866463.1| alanine racemase [Bacillus anthracis str. A0248]
 gi|254684669|ref|ZP_05148529.1| alanine racemase [Bacillus anthracis str. CNEVA-9066]
 gi|254737113|ref|ZP_05194817.1| alanine racemase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743702|ref|ZP_05201387.1| alanine racemase [Bacillus anthracis str. Kruger B]
 gi|30256728|gb|AAP25965.1| alanine racemase [Bacillus anthracis str. Ames]
 gi|47502520|gb|AAT31196.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178870|gb|AAT54246.1| alanine racemase [Bacillus anthracis str. Sterne]
 gi|164714093|gb|EDR19614.1| alanine racemase [Bacillus anthracis str. A0488]
 gi|167513641|gb|EDR89010.1| alanine racemase [Bacillus anthracis str. A0193]
 gi|167531859|gb|EDR94524.1| alanine racemase [Bacillus anthracis str. A0442]
 gi|170129005|gb|EDS97870.1| alanine racemase [Bacillus anthracis str. A0389]
 gi|170669537|gb|EDT20279.1| alanine racemase [Bacillus anthracis str. A0465]
 gi|172083311|gb|EDT68372.1| alanine racemase [Bacillus anthracis str. A0174]
 gi|190561055|gb|EDV15029.1| alanine racemase [Bacillus anthracis Tsiankovskii-I]
 gi|227006748|gb|ACP16491.1| alanine racemase [Bacillus anthracis str. CDC 684]
 gi|229268778|gb|ACQ50415.1| alanine racemase [Bacillus anthracis str. A0248]
          Length = 391

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 172/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    +  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 71  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYKGIEASL----ASSSGILLGPNYHFQ-LTRPGISLYG--GTDKINKSH-PMQTVV 236
            ++  K +   +    +S+S   + P+  FQ + R GI +YG   + ++N S   +Q  +
Sbjct: 190 AVNTAKELGIHIPYIHSSNSAGSMEPSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|160879061|ref|YP_001558029.1| alanine racemase [Clostridium phytofermentans ISDg]
 gi|160427727|gb|ABX41290.1| alanine racemase [Clostridium phytofermentans ISDg]
          Length = 389

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 184/390 (47%), Gaps = 39/390 (10%)

Query: 2   HSNEFLRL--KIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           ++  +LR+   I+L A+ +N   +   +       AV+K + YG G   IA A+ N  V+
Sbjct: 6   YNQRYLRVSANINLDAIIHNVAEARKNIKKETGIFAVIKADGYGHGAVPIARAIDN-DVE 64

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL--- 115
            + V  VEEG++LR       I +L    P     I   +L     +V QL+   KL   
Sbjct: 65  AYAVAIVEEGIELREAGITKPILILGYTAPELLTEIVQYDLT---QTVFQLSMAEKLDEI 121

Query: 116 -MSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSL--IISHLACADDPS 171
             + G      +++DTG +R+G     E++D       KKL  L L  I +H+ACAD   
Sbjct: 122 ARTLGKVAKIHIKLDTGMSRIGYQPTAESIDEIVRM--KKLSNLMLEGIFTHMACADMTD 179

Query: 172 SHVNSVQLERFRTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTD 224
                 Q E F   ++    +G++     +++S+G +  P  +  + R GISLYG   ++
Sbjct: 180 KTSAKKQFELFTAFVNQLEEQGVKLPIQHISNSAGTIDLPEMNLSMVRFGISLYGLYPSE 239

Query: 225 KINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           +++K+H  ++  +  +  I  +++   G  + YG      +   IA   +GY DG+P  L
Sbjct: 240 EVDKNHLSLEPAMELKTHISFVKELEPGHGIGYGSTFVTKKTMTIATVPVGYGDGFPRQL 299

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
           S +           G+  + G   PI+G+I MD  M D+TD   ++ GD + + G D   
Sbjct: 300 SNV-----------GRVLVHGEFAPIVGRICMDQFMIDVTDIPEVKQGDIVTLVGRDGDN 348

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I +++ A  +G+ NY+ +  +G R  + Y
Sbjct: 349 IIPVEEPADLAGSFNYEFVCNVGKRIPRVY 378


>gi|86159846|ref|YP_466631.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776357|gb|ABC83194.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 395

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 157/373 (42%), Gaps = 29/373 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL +N   + A +  AR  AVVK NAYG G      A   AG     V  V+E  
Sbjct: 19  EIDLDALAHNVRLLAARASPARLYAVVKANAYGHGAVACGRAALEAGAHGLAVVCVDEAE 78

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQV 128
           +LR     A + V+          +    L P + ++  +   S +    G   P  L++
Sbjct: 79  ELRRAGLDAPLLVIGHTPASDAARVVALGLRPAVGAMDLVEALSAEAGRRGAEVPIHLEL 138

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           ++G NR GL+    +     +      ++  + +H A A++        Q E  R     
Sbjct: 139 ESGLNRHGLTPDALVALAERARALPGLRVEGLFTHFAAAEEGDQRFTRAQFEVLRDTSRR 198

Query: 189 YKGI-EASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHPMQTVVTAEA 240
              + E   A+S+ ILL      +  R G+SLYG       GTD       ++ V++  A
Sbjct: 199 LPWVPERHCAASASILLDHEMALEAVRGGLSLYGYRPAPWCGTDA-----DLRPVMSLRA 253

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  + +   G  V YG      R + +A+   GYADGY  +                + 
Sbjct: 254 RVARVSEIDRGATVGYGRTWAANRATRVALVMCGYADGYRRSFGNRT-----------QV 302

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            + G   P++G++ MDM M D+T    +  GD + + G D    +  DD+A  + T +++
Sbjct: 303 LVHGRRAPVVGRVAMDMCMVDVTAVPGVAAGDVVTLIGRDGDERVDADDLATIADTISWE 362

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 363 ILAGISARVPRLY 375


>gi|65319386|ref|ZP_00392345.1| COG0787: Alanine racemase [Bacillus anthracis str. A2012]
          Length = 408

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 172/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    +  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLXKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL----ASSSGILLGPNYHFQ-LTRPGISLYG--GTDKINKSH-PMQTVV 236
            ++  K +   +    +S+S   + P+  FQ + R GI +YG   + ++N S   +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMEPSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|83720249|ref|YP_442531.1| alanine racemase [Burkholderia thailandensis E264]
 gi|167581458|ref|ZP_02374332.1| alanine racemase [Burkholderia thailandensis TXDOH]
 gi|167619567|ref|ZP_02388198.1| alanine racemase [Burkholderia thailandensis Bt4]
 gi|257138740|ref|ZP_05587002.1| alanine racemase [Burkholderia thailandensis E264]
 gi|83654074|gb|ABC38137.1| alanine racemase [Burkholderia thailandensis E264]
          Length = 356

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 167/364 (45%), Gaps = 32/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +  ++  A+VK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLTVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRM---LETARLSKPVNIQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD           E+  T  
Sbjct: 124 MNSGMNRLGYAPEKFRAAWERARACPGIGQITLM-THFSDADGERGVA-----EQMATFE 177

Query: 187 SHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEA 240
              +GI    SLA+S+ +L  P+ HF   RPGI LYG +   + +      +Q  +T  +
Sbjct: 178 RGAQGIAGARSLANSAAVLWHPSAHFDWVRPGIMLYGASPSGHSADIAGKGLQPTMTLAS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I ++    G+ V YG          I V A GYADGYP     +  E +P V      
Sbjct: 238 ELIAVQTLAKGQAVGYGSVFVAEDTMRIGVVACGYADGYPR----IAPEGTPVV------ 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA    T  Y+L+  
Sbjct: 288 -VDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMCA 346

Query: 361 IGTR 364
           +  R
Sbjct: 347 VAPR 350


>gi|169824891|ref|YP_001692502.1| alanine racemase [Finegoldia magna ATCC 29328]
 gi|167831696|dbj|BAG08612.1| alanine racemase [Finegoldia magna ATCC 29328]
          Length = 391

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 178/394 (45%), Gaps = 58/394 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LK+DL  LK+N+  +  +S   +  AVVK NAYG G   I   L   G+  F V+++ E 
Sbjct: 8   LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67

Query: 69  VKLR---LYTPQARIFVL---------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           ++LR   ++ P   I +L           I    E  ++D +    I++V +    S   
Sbjct: 68  LELRKNGIFKP---IMILGYISNENIEVAIKNNIELTVYDYDTAVEINNVAK----SLNK 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSL--IISHLACADDPSS 172
            C V     +++DTG  RLG  ++   D       K  K+  + L  I SH + AD   S
Sbjct: 121 ICKVH----IKIDTGMTRLGFQVRLDRDKCLEEIFKIYKMDNVVLQGIYSHFSDAD---S 173

Query: 173 HVNSVQLERFRTLISHYKGIE--------ASLASSSGILLGPNYHFQLTRPGISLYG--G 222
              S   E++ T I     +E          +A+ +G ++   Y   + R GI LYG   
Sbjct: 174 EDYSYTKEQYNTYIGFMIDVENRGITVPIKHIANDAGAII-HGYFLDMIRCGIGLYGYHA 232

Query: 223 TDKI--NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           +D +  N    ++ + +    + +I+    G  + YG       ++++A A IGYADGYP
Sbjct: 233 SDYVRENSRLNLEEISSLYTTVSMIKTVPKGTDIGYGRTFTTNSETVVATATIGYADGYP 292

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
           L LS     +   V + GK         ILGK+ MD  M D+T    ++VGD + +FG D
Sbjct: 293 LELS-----NKAYVIINGKK------AKILGKVCMDQIMIDVTYIRDVKVGDKVLLFGKD 341

Query: 341 ----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
               I L  +A  + T  Y+LL R+  R  + Y 
Sbjct: 342 DMGEISLYKLAEMANTNVYELLCRVTMRIPRIYN 375


>gi|320547461|ref|ZP_08041747.1| alanine racemase [Streptococcus equinus ATCC 9812]
 gi|320447806|gb|EFW88563.1| alanine racemase [Streptococcus equinus ATCC 9812]
          Length = 368

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 180/377 (47%), Gaps = 33/377 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  IDL A+  N  ++ A     + A AVVK NAYG G +K+A A+++  V  F V++V+
Sbjct: 10  RALIDLGAICQNIEAVKANIPEGKKAFAVVKANAYGHGAKKVAQAVHHL-VDGFCVSNVD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP--QLTFYSKLMSCGVSHPY 124
           E ++LR    +  I +L  I P +  +  D ++   ++S     L     +   GV    
Sbjct: 69  EALELREAGIEETILILGVIMPNEVALARDYDITLTVASQEWLDLAIEQDISLKGVK--V 126

Query: 125 ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+VD+G  R+G+ SL EA +   N   K    +  I +H A AD+      + QLE F 
Sbjct: 127 HLKVDSGMGRIGVRSLDEAENLIAN-LKKAGASVEGIFTHFATADEADDTKFNEQLEFFT 185

Query: 184 TLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVT 237
            ++ +     A +  ++S+  +      F + R GI +YG    GTD I   +P++  ++
Sbjct: 186 NIVDNLSDKPALVHASNSATSIWHSETIFNIVRLGIVMYGLNPSGTD-IELPYPIKPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  V YG      ++  IA   IGYADG+   L G       SV + 
Sbjct: 245 LESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGF------SVLVN 298

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G+      +  I+G+++MD     + +   I  G  + + G +    I   D+A   GT 
Sbjct: 299 GQ------VCEIVGRVSMDQITIRLPEKFPI--GTKVTLIGQEGDKVISATDLAKKRGTI 350

Query: 354 NYDLLVRIGTRYAKFYT 370
           NY++L  +  R  +FY+
Sbjct: 351 NYEVLCLLSDRIPRFYS 367


>gi|312127105|ref|YP_003991979.1| alanine racemase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777124|gb|ADQ06610.1| alanine racemase [Caldicellulosiruptor hydrothermalis 108]
          Length = 390

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 173/381 (45%), Gaps = 38/381 (9%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL  L  N  ++   +       AVVK +AYG G  +I+  L   GV    V  ++E 
Sbjct: 13  EIDLDNLVYNLENIKKKILPQTHIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAIIDEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           ++LR +     I +L G  P +  E+++ +  +   + +  Q  + S+     G      
Sbjct: 73  LQLRHFNFDVPILIL-GFTPFELSEQVV-ENEISQTVYTYEQAYYLSQAAQKVGKKAKIH 130

Query: 126 LQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----HVNSVQLE 180
           ++VDTG  R+G L   E++    N       +L  I SH + ADDP S    H   ++ E
Sbjct: 131 IKVDTGMGRIGFLCCDESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDNFTHEQFMKFE 190

Query: 181 RFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
            F   ++       YK I    A+SS  +  P Y   + R G+ LYG      + +   +
Sbjct: 191 NFVKELNKNGVYFKYKHI----ANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHISI 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+  T  G    H  
Sbjct: 247 KPVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGF--TRVGSSQRHV- 303

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                    IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A 
Sbjct: 304 --------LIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAE 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+++     R  + Y
Sbjct: 356 QIGTINYEIVCSFSKRIPRVY 376


>gi|269214143|ref|ZP_05983692.2| alanine racemase [Neisseria cinerea ATCC 14685]
 gi|269144442|gb|EEZ70860.1| alanine racemase [Neisseria cinerea ATCC 14685]
          Length = 422

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 182/379 (48%), Gaps = 42/379 (11%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD- 59
           NEF+R   ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL  A + D 
Sbjct: 68  NEFMRPLNVQIRLGNLRHNYQILKEMHG-GKLLAVVKADAYGHGAVRCAFAL--ADLADG 124

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC 118
           F V +++EG+KLR       I +L G+    E + +   +L P + +  QL     L+S 
Sbjct: 125 FAVATIDEGIKLRESGITNPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSR 181

Query: 119 GVSHPYA--LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADD 169
               P    L++D+G +R G        F H+  S    L Q   +      SH +CAD+
Sbjct: 182 HWKKPVKVWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADE 234

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           P S +  +Q+E F       +G E SLA+S+ IL  P       R G++LYG +      
Sbjct: 235 PESGMTEIQMEAFDLGTKGLEG-EESLANSAAILNIPEARRNWGRAGLALYGISPFGGSD 293

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+    RI   R       + YG     ++ + + + A GYADGYP         
Sbjct: 294 DRLKPVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PT 349

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
           ++P         + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A
Sbjct: 350 NTPVA-------VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEA 401

Query: 350 SGTTNYDLLVRIGTRYAKF 368
           +GT  Y+L+  I  + AKF
Sbjct: 402 AGTIPYELMCNI--KRAKF 418


>gi|326575825|gb|EGE25748.1| alanine racemase [Moraxella catarrhalis CO72]
          Length = 380

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 166/353 (47%), Gaps = 26/353 (7%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL----YTPQARIF 81
           L    +  A+VK +AYG G +   P L +A    F V  + E + ++        +  I 
Sbjct: 24  LDPTTKVLAMVKADAYGHGIDATVPVLIHA--DGFGVACLSEAMAVKQVLDGMNHKKPIV 81

Query: 82  VLYGIHPGQE-KIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQVDTGFNRLGLS 138
           ++ G     E K+  D +   +I    QL +    +       H   L+ +TG +RLG +
Sbjct: 82  LIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALSHRPKQDQFCHTIWLKYNTGMSRLGFN 141

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----A 194
               +  T        G   ++ SH ACADD S  +N+ Q+ +F   ++  +       A
Sbjct: 142 DDHII--TAAKSLADAGYRLILTSHFACADDKSHPLNAQQISKFDQALACIRSFAPDTLA 199

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAEARIILIRKALAG 251
           SL +S+GI    + H    R GI+LYG    TD+  K+  +   +T  A+++ I    AG
Sbjct: 200 SLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQSAKALNLMPAMTLSAQVMAIHTLAAG 259

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
           + + Y       +   IAV +IGY DGYP  + G  ++ S +   G +     ++  I+G
Sbjct: 260 DSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG--AKVSVTDTSGNR-----HLCDIIG 312

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           ++ MDM M DI D L I +   + ++G    +D+VA+ +GT  Y+L+ R+ TR
Sbjct: 313 RVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDEVAMCAGTIGYELMCRLTTR 364


>gi|253731093|ref|ZP_04865258.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725168|gb|EES93897.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 390

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 189/394 (47%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 10  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 70  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 124

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 125 NISGEQEKKLWLHIKLDTGMGRLGIKDTNTYQEVIEII-----QQYEQLVFEGVFTHFAC 179

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG--GT 223
           AD+P   + + Q +RF+ +++     E     +S+G LL         RPGISLYG   +
Sbjct: 180 ADEPGD-MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 238

Query: 224 DKIN---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           + +    K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 239 EYVQPKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 297

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 298 RIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 343

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++ VA    T NY++L  +  R  + Y
Sbjct: 344 RESPQ-SVEVVAEKQHTINYEVLCNLSRRLPRIY 376


>gi|120437675|ref|YP_863361.1| alanine racemase [Gramella forsetii KT0803]
 gi|117579825|emb|CAL68294.1| alanine racemase [Gramella forsetii KT0803]
          Length = 369

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 174/371 (46%), Gaps = 27/371 (7%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L  L +N+  + + +   A+  +VVK +AYG    +IA  L   G   F V  VEE
Sbjct: 9   LEINLGNLAHNYRFLRSKTDKEAKFLSVVKAHAYGSDSVEIAKKLEELGTDYFAVAYVEE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHPYA 125
           G++LR       I VL+   P   + I +  L P + S   L  +  L       ++P  
Sbjct: 69  GIRLRENGISKPILVLHP-QPSHFEEIIEHCLEPNLYSQKTLESFVSLAERLNQKNYPVH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFRT 184
           ++++TG NRLG    E         N    +++ + SHLA ++D      ++ Q++ FR 
Sbjct: 128 IKLNTGLNRLGFDQSEIPRVFETIKNTNSIKIASVFSHLAASEDWQEREFTLSQIDLFRK 187

Query: 185 LISHYKGIEA-------SLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPMQTVV 236
           +   ++ IE         + ++SG++  P   F + R GI LYG   DK    H ++ V 
Sbjct: 188 MT--WQLIENLDYEPLLHICNTSGVINYPKAAFSMVRTGIGLYGYSNDKTIDPH-LKPVG 244

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             +  I  IRK   G  V Y    K  ++S IA   IG+ADG    ++ +  +    VF+
Sbjct: 245 KLKTIISQIRKLDPGASVGYNRAFKTEKESKIATLPIGHADG----INRIYGKQKAGVFV 300

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
            GK        PI+G + MD+ M D+T  +  E GD + IFG      D A A GT +Y+
Sbjct: 301 NGK------YAPIVGNVCMDIIMIDVT-GIDCEEGDEVIIFGGPQHPVDFARAGGTISYE 353

Query: 357 LLVRIGTRYAK 367
           L+  I  R  +
Sbjct: 354 LITGIQRRVTR 364


>gi|118616650|ref|YP_904982.1| alanine racemase [Mycobacterium ulcerans Agy99]
 gi|166969420|sp|A0PME2|ALR_MYCUA RecName: Full=Alanine racemase
 gi|118568760|gb|ABL03511.1| alanine racemase, Alr [Mycobacterium ulcerans Agy99]
          Length = 388

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 179/386 (46%), Gaps = 50/386 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N   +   +G+A+  AVVK + YG G   +A     AG  +  V SV+E + 
Sbjct: 18  VDLGAIAHNVRLLRERAGSAQVMAVVKADGYGHGATAVARTALAAGAVELGVASVDEALT 77

Query: 71  LR---LYTPQARIFVLYGIH-PGQE---KIIFDTNLIPVISSVPQL-TFYSKLMSCGVSH 122
           LR   +  P     VL  +H PG +    +  D  +   ISS+ QL          G + 
Sbjct: 78  LRADGITAP-----VLAWLHAPGMDFGPALAADVQI--AISSIRQLDEALDAARRTGTTA 130

Query: 123 PYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              +++DTG NR G++     E +     +  +   +L  +++H+  AD P   +N +Q 
Sbjct: 131 TVTVKIDTGLNRNGVAPALYPEMVTRLRQAVAEDAIRLRGLMTHMVHADAPEKPINDIQS 190

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +RF+ ++ H +  G+    A L++SS  +  P+    L RPGI++Y G   + +   M  
Sbjct: 191 QRFKQMLDHARDQGVRFEVAHLSNSSATMARPDLTLDLVRPGIAVY-GLSPVPRLGDMGL 249

Query: 235 V--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           V  +T +  + L++   AGE VSYG       D+ +A+  IGYADG              
Sbjct: 250 VPAMTVKCAVALVKSVSAGEGVSYGHTWIAPHDTNVALLPIGYADG-------------- 295

Query: 293 SVF--LGGK--GFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK----L 343
            VF  LGG+    I G   P +G++ MD  + D+    L +  GD   +FGP  +     
Sbjct: 296 -VFRSLGGRLEVLINGKRRPGVGRVCMDQFLVDLGPGPLDVAEGDEAILFGPGTRGEPTA 354

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
            D A   GT +Y+++     R  + Y
Sbjct: 355 QDWADLVGTIHYEVVTSPRGRITRVY 380


>gi|254751429|ref|ZP_05203466.1| alanine racemase [Bacillus anthracis str. Vollum]
 gi|254758301|ref|ZP_05210328.1| alanine racemase [Bacillus anthracis str. Australia 94]
          Length = 408

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 172/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    +  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL----ASSSGILLGPNYHFQ-LTRPGISLYG--GTDKINKSH-PMQTVV 236
            ++  K +   +    +S+S   + P+  FQ + R GI +YG   + ++N S   +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMEPSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|312199983|ref|YP_004020044.1| alanine racemase [Frankia sp. EuI1c]
 gi|311231319|gb|ADP84174.1| alanine racemase [Frankia sp. EuI1c]
          Length = 388

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 166/378 (43%), Gaps = 33/378 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A++ +   + A +G+A T AVVK + YG G    A A  +AG     V  +EE + 
Sbjct: 22  IDLDAVRASTAELVARAGSAATMAVVKADGYGHGMLPCARAALDAGATWLGVAVIEEALA 81

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQV 128
           LR       +   + + PG+         I + +S P         +     P    L+ 
Sbjct: 82  LRAAGITVPVMS-WLMSPGEPLDAAIGAQIDLSASAPWALAEIAAAARSTGRPARVHLKA 140

Query: 129 DTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G +  +       +   +  G L +  + SH A AD P       Q+ RF   
Sbjct: 141 DTGLGRAGATDADWPGLCDAAAALRAEGVLDVVGVWSHFAFADAPGHPTVQGQIGRFTDA 200

Query: 186 --ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHP--MQTV 235
             I+   G+      LA+S+  L+ P  HF L RPGIS+YG   G D + +S    ++  
Sbjct: 201 VEIAEKAGLRPEVRHLANSAATLVSPEAHFDLVRPGISIYGLSPGPD-VGRSAELGLRPA 259

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   AR+ L ++   G  VSY  +     ++ +A+  +GYADG P   + L         
Sbjct: 260 MRLAARVALAKRVPPGTGVSYAHRYVTDSETTLALVPLGYADGVPRAATNL--------- 310

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             G+  + G    I G + MD  + D+ D    E GD   +FGP    +   DD A A G
Sbjct: 311 --GEVLLAGRRRRIAGTVCMDQFVLDVGDDQVAE-GDEAVLFGPGDAGEPTADDWAAALG 367

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++ RIG R  + Y
Sbjct: 368 TINYEIVTRIGPRVPRIY 385


>gi|193211960|ref|YP_001997913.1| alanine racemase [Chlorobaculum parvum NCIB 8327]
 gi|193085437|gb|ACF10713.1| alanine racemase [Chlorobaculum parvum NCIB 8327]
          Length = 384

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 177/375 (47%), Gaps = 31/375 (8%)

Query: 11  IDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L++N   + A+SG+  R   +VK +AYG G  ++   L   G+++F V ++ E +
Sbjct: 24  ISLGNLRHNLACIQAISGSRCRIMGIVKADAYGHGAAQVTATLEEEGIREFGVANIHEAI 83

Query: 70  KLR---LYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA 125
           +L+      P++RI        G  +   + ++ + V       T  +K  + G      
Sbjct: 84  ELKQSHRMQPESRILAFASPLAGHIEHYLEHDVEMTVCDHETVRTAEAKAAASGRRLRVQ 143

Query: 126 LQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            ++DTG  RLG++ +EA   L+      N     L  I +H A     +    + QLE+F
Sbjct: 144 AKIDTGMGRLGVTPEEAHSLLELIDRCPNL---DLVGIYTHFA-EGHKAGGFTARQLEQF 199

Query: 183 RTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTV 235
             +   Y     + +    A+S  I+  P+    + RPGI LYG    D    + P++ V
Sbjct: 200 LDVTGGYEQRTGRTVLKHAANSGAIVSTPSARLDMVRPGILLYGCHPMDAEPTNVPVKPV 259

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  + +++ ++K  AG  +SY         + IA  + GYADG   TLS     +  +V 
Sbjct: 260 MQFQCKVMFVKKVTAGTSISYSRTWSAPTSTNIATLSAGYADGVHRTLS-----NKATVS 314

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTN 354
           +GG  + +      +G +TMD TM D+  + S++VGD   +FG D     + A+A+GT +
Sbjct: 315 IGGNRYHQ------VGTVTMDQTMVDLGQNRSVKVGDTAVLFGWDGPSAGEQAIAAGTIS 368

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LL  +  R  + +
Sbjct: 369 YELLCAVSKRVKRVF 383


>gi|225026346|ref|ZP_03715538.1| hypothetical protein EUBHAL_00588 [Eubacterium hallii DSM 3353]
 gi|224956356|gb|EEG37565.1| hypothetical protein EUBHAL_00588 [Eubacterium hallii DSM 3353]
          Length = 390

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 186/392 (47%), Gaps = 47/392 (11%)

Query: 4   NEFLR--LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            E+LR   +IDL A++ N+ ++   +G NA T AV+K + YG G  ++A  L +  + D+
Sbjct: 18  EEYLRTYCEIDLKAIRENYINIKKKTGDNAMTMAVIKADGYGHGAVEVAHYLND--IADY 75

Query: 61  F-VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V +++EGV+LR    +  I +L    P     ++  NL   +         +K MS  
Sbjct: 76  FGVATIDEGVELRKAGLKQPILLLGYNSPS----LYYKNLEYGVDQTIYCYDTAKAMSEA 131

Query: 120 VSHPYA-----LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADD 169
                      + +DTG  R+GLS  E       +  K++ +L  I      +HL+CAD 
Sbjct: 132 AVKAEKTARIHIALDTGMTRIGLSPDE----KGLAIVKQIAELPNIKIEGLFTHLSCADM 187

Query: 170 PSSHVNSVQLERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYG--G 222
                   Q+ER+   +      GIE     + +S+ I+   ++ + + R GI LYG   
Sbjct: 188 TDKAYTESQMERYDHFVQLLDEAGIEIPVKHICNSAAIMEYEDHRYDMARAGIILYGMYP 247

Query: 223 TDKINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
           +D+++ S+  +   ++  + ++ I +      VSYG    +     +A  ++GYADGY  
Sbjct: 248 SDEVDFSNLDLTPAMSWYSHVVNIMEPEMERGVSYGATYIVEHPCRLATVSVGYADGYAR 307

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
           +LS             G   I G   PI+G++ MD  M DITD   +++ D + + G D 
Sbjct: 308 SLSN-----------KGWVLIHGQKAPIVGRVCMDQMMVDITDIPDVKLEDIVTLIGKDG 356

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              I ++D+A  +G+ NY+ +  +G R  + Y
Sbjct: 357 DNYISVEDMANLAGSFNYEFVCDVGKRVPRVY 388


>gi|163816712|ref|ZP_02208075.1| hypothetical protein COPEUT_02902 [Coprococcus eutactus ATCC 27759]
 gi|158447969|gb|EDP24964.1| hypothetical protein COPEUT_02902 [Coprococcus eutactus ATCC 27759]
          Length = 387

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 179/374 (47%), Gaps = 27/374 (7%)

Query: 11  IDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L  +++N  +M +L   + +  AV+K +AYG G  ++A AL N  V  F V  ++E +
Sbjct: 11  INLDNIRHNVAAMKSLVDKDKKMLAVIKADAYGHGAVEVAHAL-NDMVDFFAVAFIDEAI 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +LR    +  I +L    P   K++ D ++ P I  V      S+  +  G      ++V
Sbjct: 70  ELRNAGFKKPILILGYTDPEDYKLLIDFDVRPAIYDVDDARKLSETAVGKGAKAKIHIKV 129

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG  R+G S  +A        ++  G ++  + +H A AD+        QL++FR +  
Sbjct: 130 DTGMGRIGFSCDDAGVKHIEEISRMPGIEIEGMFTHYAKADELDKTAAKGQLDKFRWINR 189

Query: 188 HYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS-HPMQTVVTAE 239
             +          +++S+GI+   N  F + R GI  YG   +++++KS   ++  ++  
Sbjct: 190 QLEDKHIYIPVRHISNSAGIMEMDNSDFDMVRSGIVTYGLYPSEEVDKSIVDLRPAMSLT 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I ++   AG  + YG       D  +A  + GYADGYP   S +           G+
Sbjct: 250 SKVIFVKDVKAGTGIGYGWSYIADHDIRVATVSAGYADGYPRAQSNI-----------GR 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G   PI+G++ MD  M D++    ++V D + + G      I +++VA  + + NY
Sbjct: 299 VIIHGQYAPIIGRVCMDQFMVDVSHIDDVKVRDDVILIGRAGDKVITVEEVAEPANSFNY 358

Query: 356 DLLVRIGTRYAKFY 369
           +L+  I  R  + Y
Sbjct: 359 ELVCNISRRVPREY 372


>gi|332982730|ref|YP_004464171.1| alanine racemase [Mahella australiensis 50-1 BON]
 gi|332700408|gb|AEE97349.1| alanine racemase [Mahella australiensis 50-1 BON]
          Length = 376

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 160/351 (45%), Gaps = 26/351 (7%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK + YG G  ++A    +AG +   V   EEG +LR     A I VL GI P + + 
Sbjct: 36  AVVKADGYGHGAYRVAQTAIDAGARWLGVAIAEEGAELRDKGIDAPILVLGGIMPYEAEE 95

Query: 94  IFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
           +  + L   + S+      S   +  G S    ++VDTG  R+G+     L+        
Sbjct: 96  VVASGLCQTVFSLDVAKALSDASVKQGKSADVHIKVDTGMGRVGVRPGLELEQLIEGLVG 155

Query: 153 KLG-QLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEAS-----LASSSGILLGP 206
             G  ++ + +H A +D         Q+  F   I+  K +         A+S+ ++   
Sbjct: 156 LPGINITGMFTHFAESDACDKSFTKYQMSLFVQAINQAKAMNVGPLILHAANSAAVIDYT 215

Query: 207 NYHFQLTRPGISLYG--GTDKINKSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKL 262
           + HF + R GIS+YG   +++IN      ++  ++ +AR++ ++   AG  +SYG     
Sbjct: 216 DAHFNMVRGGISIYGYYPSNEINNPQKIDLKPALSWKARVVYVKDVPAGTPISYGRTFTT 275

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
            R S IA  + GYADGY   LS             G   I+G   P++G++ MD  M D+
Sbjct: 276 QRSSKIATISAGYADGYRRQLSN-----------KGCVLIRGNRAPVIGRVCMDQFMVDV 324

Query: 323 TDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           TD   +  GD + + G      I  D++A    T +Y++L  IG R  + Y
Sbjct: 325 TDIPGVVTGDEVVLIGRQGNETITADELAELCDTISYEILTSIGPRVPRIY 375


>gi|294782996|ref|ZP_06748320.1| alanine racemase [Fusobacterium sp. 1_1_41FAA]
 gi|294479874|gb|EFG27651.1| alanine racemase [Fusobacterium sp. 1_1_41FAA]
          Length = 354

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 177/375 (47%), Gaps = 44/375 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  L+ N     VVK NAYGLG  +IA  L   GV  F + ++EE 
Sbjct: 5   VEIDKENLKYNILKLKELADNREVLGVVKANAYGLGSVEIAKILQEVGVNFFGLANLEEV 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L+    +A  F++ G     E I      I V ISS+ QL F   L+   ++    L+
Sbjct: 65  IELQEAGIKAN-FLILGASFEDELIEATKRDIHVAISSMQQLKF---LVENNLNPNIHLK 120

Query: 128 VDTGFNRLGLSL---QEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            DTG  RLG  +   +E ++F  THN        L  I +HL+ +D  +    +  LE+ 
Sbjct: 121 FDTGMTRLGFEVYEAEEVINFCKTHNL------NLVGIFTHLSDSDGNTIDTKNFTLEQI 174

Query: 183 RTLISHYKGIEAS---LASSSGILLGPNYHF----QLTRPGISLYGGTDKINKSHP-MQT 234
               +  KG++     +++S+GI    N+H      L R GI++Y  T   NK  P ++ 
Sbjct: 175 EKFKNIVKGLDLKYIHISNSAGI---TNFHENILGNLVRAGIAMYSFTG--NKKTPCLKN 229

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V T +++++  +K      VSYG    L  DS  AV  IGYADG    L+          
Sbjct: 230 VFTIKSKVLFTKKVNKDSFVSYGRHYTLPADSTYAVIPIGYADGLKKYLTK--------- 280

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGT 352
             GG   I  +   I+G I MDMTM  I   L  +I++ D + +   DI +D++ +    
Sbjct: 281 --GGYVLINNHRCEIIGNICMDMTMVRIPKELEKTIKISDEVTVINADI-IDNLNIPEFC 337

Query: 353 TNYDLLVRIGTRYAK 367
             ++ +  IG R  +
Sbjct: 338 V-WEFMTGIGRRVKR 351


>gi|302337870|ref|YP_003803076.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
 gi|301635055|gb|ADK80482.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
          Length = 371

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 171/387 (44%), Gaps = 48/387 (12%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + +IDL   ++N   ++  +G  +   VVK NAYG G  K+A     AG Q   V +V+E
Sbjct: 5   KARIDLDLYRHNIRVISKKTGGRKICLVVKANAYGHGSVKMAKVGIEAGAQALGVATVDE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS----CGVSHP 123
            ++LR     A IF+       +   +   ++IP +S +  +    +         + H 
Sbjct: 65  ALELREAGIAAPIFLFTVADVSEVPQLVRFDIIPFVSDLAYIKQIEREAQNQEKVAMVH- 123

Query: 124 YALQVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L+VDTG  RLG   +EAL    F  NS N  +G L    +H + +D        +Q+ 
Sbjct: 124 --LKVDTGMGRLGCRPEEALSLASFVGNSKNLMMGGLC---THFSLSDISDRAYTLLQIN 178

Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKIN 227
           R   L+   +           A++  I+  P  ++ + RPG+ ++G        G D+ +
Sbjct: 179 RLNLLVDTLRSQHIPYGLVHAANTGAIIQYPEAYYDMVRPGLGIFGYPPDLIHMGRDRAD 238

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V++ E +I LI+    GE VSYG       D+ I V A G+ DGYP +LS   
Sbjct: 239 ----LRPVLSMETKIGLIKTIKKGESVSYGRTFVAENDTHIGVVAAGFCDGYPRSLS--- 291

Query: 288 SEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---PDIK 342
                      KGF  IKG   P++G + MD  + D+   L ++  D + + G    +  
Sbjct: 292 ----------NKGFVTIKGKHYPVIGMVCMDQLIVDLGRDLQVDPDDTVVLLGHGRNEPT 341

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           + D+         +++ RI  R  K Y
Sbjct: 342 MVDLTQRGNIIVNEVICRIPARVPKVY 368


>gi|270262189|ref|ZP_06190461.1| alanine racemase [Serratia odorifera 4Rx13]
 gi|270044065|gb|EFA17157.1| alanine racemase [Serratia odorifera 4Rx13]
          Length = 357

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 167/365 (45%), Gaps = 34/365 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L+A +NN   +   + +A+  +VVK NAYG G + +  +L       F +  + E + 
Sbjct: 9   LHLSAFENNLQVIRRFAPSAKIWSVVKANAYGHGIKHVWRSLGQ--TDGFALLDLAEAIL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    Q  I +L G   P    ++    L   + S  QL   +          Y L+V+
Sbjct: 67  LRESGWQGPILLLEGFFKPQDLLLLDRYRLTTSVHSDWQLAAIAAAKLSAPLDVY-LKVN 125

Query: 130 TGFNRLGLSLQEALDFTHNSF--NKKLGQLS--LIISHLACADDPSSHVNSVQLERFRTL 185
           +G NRLG S     D  H+ +   +++G ++   ++SH A AD P         E+   +
Sbjct: 126 SGMNRLGFSP----DRLHSVWLQAREMGNIASLTLMSHFATADGPQGVA-----EQMTVI 176

Query: 186 ISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAE 239
                GI     LA+S+  L  P  H    RPGI LYG    G  +      +Q  +T  
Sbjct: 177 EGAAAGIPLPRCLANSAATLWHPQTHGSWVRPGIVLYGASPSGQWRDIADSGLQATMTLS 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   +G+ V YG +        I V A GYADGYP         H+PS   G  
Sbjct: 237 SEIIGVQALKSGDRVGYGWRYSAKAAQRIGVVACGYADGYP--------RHAPS---GTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G +   +G ++MDM   D+T     ++G  ++++G  + +DDVA A+GT  Y+LL 
Sbjct: 286 VWVDGVLTHTVGTVSMDMLAVDLTHCPGADIGAEVELWGRRLPVDDVAAAAGTLGYELLT 345

Query: 360 RIGTR 364
            +  R
Sbjct: 346 ALAAR 350


>gi|303257818|ref|ZP_07343828.1| alanine racemase [Burkholderiales bacterium 1_1_47]
 gi|330998760|ref|ZP_08322488.1| alanine racemase [Parasutterella excrementihominis YIT 11859]
 gi|302859421|gb|EFL82502.1| alanine racemase [Burkholderiales bacterium 1_1_47]
 gi|329576257|gb|EGG57773.1| alanine racemase [Parasutterella excrementihominis YIT 11859]
          Length = 360

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 21/367 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  ID  AL+ N   + A SGN     VVK NAYG G   + P   N  V    +   +
Sbjct: 5   IRALIDTYALEKNLSLLRAKSGNRFLWGVVKANAYGHGLIGLLPTFDNW-VDGLALLDPK 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSK--LMSCGVSHP 123
           EGV +R       + ++ GI    +  + D      VI +  Q+ +  K  L +    H 
Sbjct: 64  EGVDIRKAGWAKAVLLIEGIFAASDIEMADEYGFETVIHNERQIEWLEKAELKNTLRVH- 122

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+ +TG NRLG   +          N    ++  +++H A A+        V ++   
Sbjct: 123 --LKCNTGMNRLGFRPEAIPQVLFRLNNIPKVEVVDLLAHFANAEVTYEQDKPVTVQNQL 180

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
             +   +G+     S++G +L      +  R GI++YG +   N   +S  +  V+T E+
Sbjct: 181 AALIQLRGLLPMCLSNTGGILWHEAGDEAVRAGIAMYGVSPDGNVSSQSLGIDPVMTLES 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II  +    GE   YG +    R + +AV A GYADGYP      D+ H   V      
Sbjct: 241 EIIAFQDLQPGEACGYGSKFIAHRPTKLAVVACGYADGYPRK----DNPHREVV------ 290

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            ++G  VP++G ++MDM   D+TD  ++ +G  ++I+G ++ +++VA   GT  Y+LL  
Sbjct: 291 -VEGKRVPVIGNVSMDMLTIDVTDLPNVRLGSKVEIWGKNLPVNEVAKGFGTIGYELLCD 349

Query: 361 IGTRYAK 367
           +  R  +
Sbjct: 350 VNQRVPR 356


>gi|170733394|ref|YP_001765341.1| alanine racemase [Burkholderia cenocepacia MC0-3]
 gi|169816636|gb|ACA91219.1| alanine racemase [Burkholderia cenocepacia MC0-3]
          Length = 356

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 163/362 (45%), Gaps = 28/362 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +G ++  AVVK NAYG G  +  P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG   ++    +        +GQ++L+ +H + AD+        QL  F    
Sbjct: 124 MNSGMNRLGYVPEKYRAAWERARACPGIGQITLM-THFSDADNERGVAE--QLATFERGA 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEARI 242
               G   SLA+S+ +L  P+ HF   RPGI LYG +     S    T     +T  + +
Sbjct: 181 ESIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLASEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    G+ + YG          I V A GYADGYP     +  E +P +       +
Sbjct: 240 IAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR----VAPEGTPVI-------V 288

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    I+G+++MDM   D+T      V   ++++G  + +DDVA   GT  Y+L+  + 
Sbjct: 289 DGIRTRIVGRVSMDMITVDLTPCPQAGVSARVELWGNALPIDDVARHCGTIGYELMCAVA 348

Query: 363 TR 364
            R
Sbjct: 349 AR 350


>gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillum seropedicae SmR1]
 gi|300074250|gb|ADJ63649.1| alanine racemase protein [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 174/377 (46%), Gaps = 52/377 (13%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I ++AL++N     A +  AR   V+K N YG G E+       A      +   +  V+
Sbjct: 9   ISISALQHNLAVARAHAPGARVWGVLKANGYGHGLERAMRGF--AAADGLALIEPDYAVR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------------VPQLTFYSKLMSC 118
           LR       I +L G         FD + +PV++             + QL  ++   S 
Sbjct: 67  LRELGWTKPILLLEGF--------FDADDLPVLAQHDIQFAVHCEEQIAQLEAFTAAASL 118

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS-----HLACADDPSSH 173
              H + L++++G NRLG   +     T+ +   +L ++  + S     H A ADD  + 
Sbjct: 119 ---HAH-LKMNSGMNRLGFKPE-----TYRAAYARLQKIPSVASITLMTHFANADDAGNP 169

Query: 174 VNSVQLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           +  +  E+ R   +  +G++   SL +S+  L+         RPG+ LYGGT     +  
Sbjct: 170 LLPLA-EQVRRFQAGSEGLDGPRSLCNSAADLMHAELANDWVRPGVMLYGGTPGGGSAAD 228

Query: 232 --MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  +T E+RII I++  AGE + YG +    +   I V A GYADGYP         
Sbjct: 229 FGLRAAMTLESRIIGIQQVPAGEAIGYGSRFVADKPMKIGVVACGYADGYP--------R 280

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
           H+P+   G    + G     +G+++MDM   D+T     +VG  ++++G  + +D+VA A
Sbjct: 281 HAPN---GTPVLVDGVKTGTVGRVSMDMLTVDLTHIPDADVGSQVELWGSKLPIDEVAYA 337

Query: 350 SGTTNYDLLVRIGTRYA 366
           +GT  Y+L+  +  R A
Sbjct: 338 AGTIGYELMCALAPRVA 354


>gi|317133520|ref|YP_004092834.1| alanine racemase [Ethanoligenens harbinense YUAN-3]
 gi|315471499|gb|ADU28103.1| alanine racemase [Ethanoligenens harbinense YUAN-3]
          Length = 393

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 173/381 (45%), Gaps = 34/381 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++DL  ++ N+ ++ A +S  ++   +VK + YG G   +A A  +AG   F V+++EE 
Sbjct: 11  EVDLDKIEANYLAIRAYVSPQSKIMTIVKADGYGHGAPFVAKAFDDAGTDWFGVSNIEEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLMSCGVSHPYA 125
            +LR+   +  I +L    P    ++    +   + S+    QL+  +K    G +    
Sbjct: 71  EQLRIAGIEKPILILGYTPPEFAGMLIKQRVTQTLFSMEYGEQLSAAAK--EAGGTVDVH 128

Query: 126 LQVDTGFNRLGLSLQEALD----FTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQL 179
           L++DTG +R+G       D        +    L  L +  + +H A +D+P +     Q 
Sbjct: 129 LKLDTGMSRIGFLFHGEEDAPALLQDGAAAAALPNLRIDGVFTHFAVSDEPGNPFTRTQF 188

Query: 180 ERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--M 232
           ERF   ++    +G+  SL    +S+G+L  P     + RPGI LYG T  +    P  +
Sbjct: 189 ERFIRAVALLEEQGLRFSLRHCCNSAGLLNYPEMQLDMVRPGIILYGLTPAVGMPLPIEL 248

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  +  +  +   +    G  VSYG   +      +    IGYADGY  +LS        
Sbjct: 249 QPAMALKTMLFQTKTLTPGTPVSYGMIYRTPSARRVGTLPIGYADGYARSLS-----DRA 303

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
            V + GK         I+G++ MD  M D+TD  + + GD + + G D    + ++++A 
Sbjct: 304 DVLIHGK------RARIVGRVCMDQCMADVTDIPNAQSGDVVTVIGRDGGETVSMEEIAA 357

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+    IG R  + +
Sbjct: 358 QMGTINYETACLIGKRVPRVF 378


>gi|260663736|ref|ZP_05864624.1| alanine racemase [Lactobacillus fermentum 28-3-CHN]
 gi|260551787|gb|EEX24903.1| alanine racemase [Lactobacillus fermentum 28-3-CHN]
          Length = 373

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 161/376 (42%), Gaps = 30/376 (7%)

Query: 9   LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL AL  N       L+  +R  AVVK NAYG G   +A AL  AGV+ F V  ++E
Sbjct: 11  LVVDLKALGANVQRQREQLAPGSRILAVVKANAYGNGMVPVASALARAGVEGFCVALLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLM-SCGVSHPYA 125
            ++LR    Q  + VL GI P +   +     I + + S+  L  Y +L    G+ HP  
Sbjct: 71  AIELRDSGIQELVLVL-GITPVEYAPLAAAQGISLTVGSLEWLKNYQRLAKEEGIKHPLK 129

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182
             L +DTG  R+G +  E              +   I +H A AD+  +     Q  RF 
Sbjct: 130 VHLALDTGMGRIGFTTPEDFKEALQLVAAPCFEFEGIFTHFATADEEDATYFERQRARFD 189

Query: 183 --RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
               +++          S++G+    +      R GIS+YG       I +S P++ V +
Sbjct: 190 DFMAVVTKRPPFVHVANSATGLWHQKSIVANTIRMGISMYGANPSGVGIKESFPLEPVTS 249

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
                  +++  AGE VSYG       D  +A   +GYADGYP  + G            
Sbjct: 250 LVTHATYVKQLKAGESVSYGATYTAKEDEWVATLPVGYADGYPRRMQGFYV--------- 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    +LG++ MD  M  +       VG    + G     +I + DVA  + T 
Sbjct: 301 ---LVDGQRCEVLGRVCMDQMMVRLPKEYP--VGTEAVLMGRSLDQEITVTDVAEYAHTI 355

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +G R  + Y
Sbjct: 356 NYEILTGMGARLHRRY 371


>gi|45359075|ref|NP_988632.1| alanine racemase [Methanococcus maripaludis S2]
 gi|45047950|emb|CAF31068.1| Alanine racemase [Methanococcus maripaludis S2]
          Length = 373

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 170/380 (44%), Gaps = 37/380 (9%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL+A+KNN   +  ++   ++  AVVK NAYG G  +++      G     V    E 
Sbjct: 9   EIDLSAIKNNIKEIRRITNPKSQVMAVVKANAYGHGSVEVSKICLENGADRLAVARSTEA 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
           ++LR       I V   +   +   + + ++   + S+       K+    G      ++
Sbjct: 69  LELRDAGITCPILVFGYVTEEEILKMVENDITLTVYSLEIANSIQKIAEKLGKHSKIHIK 128

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTL 185
           VDTG +RLG  L E          ++L  + +  I +H A AD+      ++Q  +F + 
Sbjct: 129 VDTGMSRLGF-LPEKSSVETIKKIRELENIEVEGIYTHFADADNSDKTYTTMQFSKFTSF 187

Query: 186 ISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHPMQ 233
           +   +  GI+  +   ++S+ I+  P  H  + RPGI LYG         ++IN    +Q
Sbjct: 188 LHDLEENGIDIPIKHASNSAAIIDHPETHLNMVRPGIILYGLYPSELVHKERIN----LQ 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ +  +  ++       +SYG   +  + S IA   IGYADG+   L          
Sbjct: 244 PAMSLKVLVTHVKDVPENTKISYGCTFETKKQSKIASLPIGYADGFTRMLRN-------- 295

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
               G   I G  VP++G+I MD  M D+T   ++ VGD + +FG D    I +++    
Sbjct: 296 ----GNVLIHGLRVPVVGRICMDQCMIDVTSIENVNVGDVVTVFGKDGTEKISIEEFGNK 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+L+  +  R  + Y
Sbjct: 352 LGTINYELVCMVSARVPRIY 371


>gi|289805711|ref|ZP_06536340.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 245

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 110/218 (50%), Gaps = 17/218 (7%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P       QL+ F  
Sbjct: 35  MKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNA 94

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEA 240
                 G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  +
Sbjct: 95  FCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTS 153

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R   AGE V YGG     RD+ + V A+GY DGYP          +PS   G   
Sbjct: 154 SLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA--------APS---GTPV 202

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            + G  VPI+G++ MDM   D+  +     GD + ++G
Sbjct: 203 LVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWG 240


>gi|295104133|emb|CBL01677.1| alanine racemase [Faecalibacterium prausnitzii SL3/3]
          Length = 400

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 172/386 (44%), Gaps = 40/386 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL+ N+  + A +G     AVVK ++YG G  + A      G     V+ + E V
Sbjct: 13  EIDLEALRYNFREVKARAGALPLCAVVKADSYGHGAVQCARVFAEEGAAWLAVSCLTEAV 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYALQ 127
           +LR       I +L  + P     +   ++     S+ Q    S+  + + G  H + L+
Sbjct: 73  QLRKAGQTLPILILGHVQPAYAAALIQNDITVACYSLAQARALSEAAVAAGGKVHIH-LK 131

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG----QLSLIISHLACADDPSSHVNSVQLERFR 183
            DTG  R+G +L+   D       +       +++ +  H + ADD +    +   E+  
Sbjct: 132 ADTGMGRIGFALRTDFDAAIREMLEACALPGLEMTGLFQHFSVADDTAPENVAYTAEQHA 191

Query: 184 TLISHYKGIEAS--------LASSSGILLGPNY------HFQLTRPGISLYG--GTDKIN 227
             +  +  ++A+          +S+G++L P++         + RPGI LYG   +D++ 
Sbjct: 192 LFVKAFHALKAAGREPALVHCDNSAGVMLHPDWPEGLPRERCMARPGIILYGYDPSDEVR 251

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
                + V+T +  + +I++   G+  SYG +    + + +A    GYADGYP  LS   
Sbjct: 252 FGR-FKPVMTLKTVVSMIKEMQPGQCASYGRRFTAEKPTKVATLCTGYADGYPRLLS--- 307

Query: 288 SEHSPSVFLGGKGFIK--GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK--L 343
                     GKG ++  G   P+LG++ MD  M D+TD   +   D   ++G  +    
Sbjct: 308 ---------CGKGVVEIHGKACPVLGRVCMDQMMVDVTDVPEVREDDEAILWGGTVSDTA 358

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + +A  + T  Y++L  +  R  + Y
Sbjct: 359 ETIARKTDTIPYEVLCGVSRRVPRVY 384


>gi|291482873|dbj|BAI83948.1| D-alanine racemase [Bacillus subtilis subsp. natto BEST195]
          Length = 389

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 173/387 (44%), Gaps = 36/387 (9%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +  F R    +IDL+A+K N  +M    G +    AVVK NAYG G  + A A  +AG
Sbjct: 1   MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR    +A I VL  + P    I  + ++     SV  L   ++  
Sbjct: 61  ASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHT 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175
             G  H + L+VDTG NRLG+  +E +       ++    +   + +H A AD+      
Sbjct: 121 KKGYLH-FHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
            +Q ERF+ LI+    K +    A+S+  L      F   R GI +YG   +  I+   P
Sbjct: 180 LMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADISDEIP 239

Query: 232 MQ-----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            Q     T+ +  + + LIRK   GE VSYG +    +D+ I    +GYADG+   L G 
Sbjct: 240 FQLRPAFTLHSTLSHVKLIRK---GESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGT 296

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           D              +KG  + I G+I MD  M ++        G  + + G      I 
Sbjct: 297 DI------------LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYIS 342

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +D++A    T NY++   I +R  + +
Sbjct: 343 MDEIAGRLETINYEVACTISSRVPRMF 369


>gi|241759708|ref|ZP_04757808.1| alanine racemase [Neisseria flavescens SK114]
 gi|241319716|gb|EER56112.1| alanine racemase [Neisseria flavescens SK114]
          Length = 352

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 178/377 (47%), Gaps = 47/377 (12%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           L  +I L  L+ N+  +  L GN +  AV+K +AYG G  + A AL  A + D F V +V
Sbjct: 4   LNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHAL--ADIADGFAVATV 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +EGV+LR    +  I +L G+    E    D  +L P I S  QL  +       V H +
Sbjct: 61  DEGVELRQNGIKNPIVLLEGVFEAAEYADVDRYDLWPAIGSQWQLEAF-------VHHEW 113

Query: 125 A------LQVDTGFNRLGLSLQEALDFTHN-----SFNKKLGQLSLII--SHLACADDPS 171
                  L++D+G +R G        F HN     +  K+   +  I+  SH ACAD+P 
Sbjct: 114 QRPTTVWLKMDSGMHRAGF-------FPHNYAAAYTALKQSESVENIVKFSHFACADEPE 166

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           + +  +QLE F       +G E SLA+S+ IL  P       R G++LYG +        
Sbjct: 167 NGMTEMQLEAFDLACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGVDER 225

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+   +R+   R       + YG     ++ + + + A GYADGYP       S +S
Sbjct: 226 LKPVMRLTSRVFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----STNS 281

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
           P         + G    I+G+++MDM   ++  S    +G  ++++G  I +++V+  +G
Sbjct: 282 PVA-------VDGKRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVSEVAG 333

Query: 352 TTNYDLLVRIGTRYAKF 368
              Y++L  I  + AKF
Sbjct: 334 MIPYEILCNI--KRAKF 348


>gi|188584948|ref|YP_001916493.1| alanine racemase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349635|gb|ACB83905.1| alanine racemase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 390

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 49/385 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L  N++ +     N +   ++K + YG G  +IA  L N GV    V  ++E V
Sbjct: 13  EINLDNLSYNFNRIREHVNNKKIMGIIKADGYGHGAVEIAEELLNQGVDYLGVAILDEAV 72

Query: 70  KLRL-----------YTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           +LR            YTP   + V   YGI P     I+   +   +S   +     K+ 
Sbjct: 73  ELRKAGIAAPILILGYTPVEHVDVCLKYGITP----TIYTYEMAEALSQTAR-----KMG 123

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                H   +++DTG  R+G++ + + +F  N       ++  + +H + AD+       
Sbjct: 124 KTAFVH---VKIDTGMGRIGIAPENSAEFVKNISKLPSLEVEGVFTHFSVADEEDKTYTQ 180

Query: 177 VQLERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            Q+  F   +     +GIE  L   A+S   +  P+ +F + R G++L+G   +  + + 
Sbjct: 181 QQINSFEKALKMLEDEGIEIPLKHAANSPATIDLPDAYFDMVRVGLALFGLYPSPHMKEK 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDS 288
             ++ V++ + ++  +++   G  +SY G+K +T D S+I    +GYADG+   LS +  
Sbjct: 241 ISLKPVMSLKTQVSHVKQVPKGTSISY-GRKFITEDESIIGTLPVGYADGFTRLLSNI-- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344
                    G+  + G  VPI+G I MD  MF   D   I +GD + I G      I ++
Sbjct: 298 ---------GEVIVNGKRVPIVGAICMDQCMFLGDDVPEIGIGDEVVIIGEQDGTQITVE 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           D+A   GT NY+++  +  R  + Y
Sbjct: 349 DIADKLGTINYEIVTMVDKRVPRLY 373


>gi|326794048|ref|YP_004311868.1| alanine racemase [Marinomonas mediterranea MMB-1]
 gi|326544812|gb|ADZ90032.1| Alanine racemase [Marinomonas mediterranea MMB-1]
          Length = 373

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 174/385 (45%), Gaps = 45/385 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+  IDL A+K N+     L    +  AVVK +AYG G   +A  L +  V  F V ++E
Sbjct: 5   LKAIIDLEAIKINYQFSKKLHPTCKALAVVKSDAYGHGAVDVATYL-DDDVDAFAVAAIE 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQL----TFYSKLMSCGVS 121
           E ++LR     + I +L G+    E  +  +     VI +  QL       SK+    V 
Sbjct: 64  EALQLREADVTSPILLLEGVFEQNEWPLCEELGFWCVIENTTQLDGLLNAQSKIEKVFV- 122

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
                ++DTG +RLGL+  +            L +  ++++H +CADD SS     QL  
Sbjct: 123 -----KLDTGMHRLGLNSLQVEHVVDTLKASGLVEEVVLMTHFSCADDLSSLETIKQLTL 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKINKSHPMQ 233
           F         +  S+A+S+ I+          RPGI LYG        GT ++     MQ
Sbjct: 178 FEEANRTVGHLTTSVANSAAIMKWSVPEGGWIRPGIMLYGISPFVGVTGT-QLGLKPAMQ 236

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V    +++I +R    G+ V Y  Q        IA  A+GY DGYP +     SE+   
Sbjct: 237 LV----SKVISVRDVNIGDTVGYSQQYTAEHPHQIATVAVGYGDGYPRS-----SENGTP 287

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---------IEVGDYIQIFGPDIKLD 344
           V L G          + G+++MDM    +++  S         I++G+ ++++G  + ++
Sbjct: 288 VALSGD------TAELAGRVSMDMITVKLSNQASSERPHQERKIQLGEEVELWGEQVPVE 341

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +VA  SGT  Y+L+ R+  R  + Y
Sbjct: 342 EVAYRSGTIGYELVTRMTQRPMREY 366


>gi|261367671|ref|ZP_05980554.1| alanine racemase [Subdoligranulum variabile DSM 15176]
 gi|282570464|gb|EFB75999.1| alanine racemase [Subdoligranulum variabile DSM 15176]
          Length = 395

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 163/377 (43%), Gaps = 27/377 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL++N+  +    G     AVVK +AYG G   +A  L   G   F V+ + E  
Sbjct: 13  EIDLDALRHNFAFIKRTIGGP-VCAVVKADAYGHGDIVVARVLQEEGAAAFAVSCLAEAK 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQV 128
           +LR +     + +L    P +   +   ++     S       S             L++
Sbjct: 72  RLRRHGITVPVLILGYADPSEASALAQEDIATACFSTEYAKALSAAAVAAGVQVKVHLKI 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNK--KLGQLSL--IISHLACAD--DPSSHV-NSVQLER 181
           DTG  R+G + Q               L  LS+  I  H A AD  +P +      Q   
Sbjct: 132 DTGMGRIGFAAQSDWQAVVRELEALCSLPGLSICGIFQHFAVADSLEPDAQTYTDNQYTL 191

Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQT 234
           FR ++       Y       A+S+  L  P +   +TR GI LYG  D  ++ H   ++ 
Sbjct: 192 FRKVVDQLQADGYDTGTVHCANSAAQLRHPEWRNDMTRAGIILYG-LDPSDELHFPVLKP 250

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T +  +  ++  L G+ VSYG          +A A +GYADGYP  LSG   +     
Sbjct: 251 VMTLKCIVTFVKDLLPGQSVSYGRTFTAKAPMRVATACVGYADGYPRMLSGSQGQ----- 305

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK--LDDVALASGT 352
              G   + G   P+LG++ MD T+ D+T+   + +GD + +FGP      D +A  + T
Sbjct: 306 ---GLMMVNGRPAPVLGRVCMDQTLLDVTNIPGVRMGDEVTVFGPGAPDTADTIARKTDT 362

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y+++  I  R  + Y
Sbjct: 363 ISYEIVCGIARRVPRVY 379


>gi|169830668|ref|YP_001716650.1| alanine racemase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637512|gb|ACA59018.1| alanine racemase [Candidatus Desulforudis audaxviator MP104C]
          Length = 380

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 167/378 (44%), Gaps = 29/378 (7%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L+AL +N   +  L G +   AAVVK NAYG G  ++A  L   G     V  V+EG
Sbjct: 11  EVNLSALAHNLGEVRRLVGSDTEVAAVVKANAYGHGLVEVAGTLLAHGADRLCVARVDEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR     A + V+  + P       D +L + V          +     G   P  L+
Sbjct: 71  VALREAGIDAPVLVMGFVPPPLYDTALDHDLTLTVYDPEAAAELSAAAARHGRPAPVHLK 130

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHVNSVQLERF-- 182
           +DTG  RLGL   +  D   N      L  L +  + +H A AD         QL  F  
Sbjct: 131 LDTGMGRLGLVTADR-DLYRNILAIASLPHLEIEGLYTHFANADRRDKSHAQRQLVDFVE 189

Query: 183 RTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
            T    + GI+  L   A+S+ ++  P     L RPGI LYG     +   +   ++ V+
Sbjct: 190 VTCTLGHDGIDIELLHAANSAALIDMPESRLNLVRPGIMLYGLYPSPEVKTRQVDLRPVM 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +A++  +++  AG  VSYG        + +A    GYADGY   LS            
Sbjct: 250 TLKAQVGFLKRVPAGWTVSYGSTYTTPAPTTLATVPCGYADGYNRRLSNR---------- 299

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G   P++G++TMD  + D+     + VGD + +FG     ++ +D+VA    T
Sbjct: 300 -GAVLIHGRRAPVVGRVTMDQIVVDVGHIPGVAVGDEVVLFGRQGEAELHVDEVAALLDT 358

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY+++  +  R  + Y 
Sbjct: 359 INYEVVCAVSARVPRVYV 376


>gi|16077531|ref|NP_388345.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308287|ref|ZP_03590134.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312609|ref|ZP_03594414.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317532|ref|ZP_03598826.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321808|ref|ZP_03603102.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321314138|ref|YP_004206425.1| alanine racemase [Bacillus subtilis BSn5]
 gi|3915604|sp|P10725|ALR1_BACSU RecName: Full=Alanine racemase 1
 gi|1881274|dbj|BAA19301.1| ALANINE RACEMASE [Bacillus subtilis]
 gi|2632764|emb|CAB12271.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. 168]
 gi|320020412|gb|ADV95398.1| alanine racemase [Bacillus subtilis BSn5]
          Length = 389

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 174/387 (44%), Gaps = 36/387 (9%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +  F R    +IDL+A+K N  +M    G +    AVVK NAYG G  + A A  +AG
Sbjct: 1   MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR    +A I VL  + P    I  + ++     SV  L   ++  
Sbjct: 61  ASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHT 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175
             G  H + L+VDTG NRLG+  +E +       ++    +   + +H A AD+      
Sbjct: 121 KKGSLH-FHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------GTDKIN 227
            +Q ERF+ LI+    K +    A+S+  L      F   R GI +YG       +D+I 
Sbjct: 180 LMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADMSDEIP 239

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            +  P  T+ +  + + LIRK   GE VSYG +    +D+ I    +GYADG+   L G 
Sbjct: 240 FQLRPAFTLHSTLSHVKLIRK---GESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGT 296

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           D              +KG  + I G+I MD  M ++        G  + + G      I 
Sbjct: 297 DI------------LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYIS 342

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +D++A    T NY++   I +R  + +
Sbjct: 343 MDEIAGRLETINYEVACTISSRVPRMF 369


>gi|261380880|ref|ZP_05985453.1| alanine racemase [Neisseria subflava NJ9703]
 gi|284796357|gb|EFC51704.1| alanine racemase [Neisseria subflava NJ9703]
          Length = 352

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 178/377 (47%), Gaps = 47/377 (12%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           L  +I L  L+ N+  +  L GN +  AV+K +AYG G  + A AL  A + D F V +V
Sbjct: 4   LNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHAL--ADIADGFAVATV 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +EGV+LR    +  I +L G+    E    D  +L P I S  QL  +       V H +
Sbjct: 61  DEGVELRQNGIKNPIVLLEGVFEAAEYADVDRYDLWPAIGSQWQLEAF-------VHHEW 113

Query: 125 A------LQVDTGFNRLGLSLQEALDFTHN-----SFNKKLGQLSLII--SHLACADDPS 171
                  L++D+G +R G        F HN     +  K+   +  I+  SH ACAD+P 
Sbjct: 114 QHLTTVWLKMDSGMHRAGF-------FPHNYAAAYTALKQSESVENIVKFSHFACADEPE 166

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           + +  +QLE F       +G E SLA+S+ IL  P       R G++LYG +        
Sbjct: 167 NGMTEMQLEAFDLACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGVDER 225

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+   +R+   R       + YG     ++ + + + A GYADGYP       S +S
Sbjct: 226 LKPVMRLTSRVFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----STNS 281

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
           P         + G    I+G+++MDM   ++  S    +G  ++++G  I +++V+  +G
Sbjct: 282 PVA-------VDGKRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVSEVAG 333

Query: 352 TTNYDLLVRIGTRYAKF 368
              Y++L  I  + AKF
Sbjct: 334 MIPYEILCNI--KRAKF 348


>gi|298695345|gb|ADI98567.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus ED133]
          Length = 382

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 187/394 (47%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 62  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 116

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 117 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 171

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P  ++ + Q +RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 172 ADEP-GYMTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 230

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 231 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 289

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 290 RIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 335

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++  A    T NY++L  +  R  + Y
Sbjct: 336 RESPQ-SVEVAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|229917795|ref|YP_002886441.1| alanine racemase [Exiguobacterium sp. AT1b]
 gi|229469224|gb|ACQ70996.1| alanine racemase [Exiguobacterium sp. AT1b]
          Length = 358

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 169/375 (45%), Gaps = 36/375 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++ID  A+ +N   +          AVVK NAYG G  ++A      G     V  +EE
Sbjct: 6   RIEIDRAAIAHNIKELTRRIPQ-DLMAVVKANAYGHGAVEVAKIALENGATMLGVALLEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
            ++LR    +A I V+    P    +  +  +   + S   L   +  +      P A  
Sbjct: 65  ALELRDAGIEAPILVMEAQFPEYAGVAAEQGITLSVFSAEWLREAAPYIE---EKPLAVH 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++VDTG  RLGL  +E L+            +  I +H A AD+  S++   Q ERF  L
Sbjct: 122 IKVDTGMGRLGLRTREQLNALLEEATDSF-VVEGIYTHFATADELDSNLYYTQQERFERL 180

Query: 186 I----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT------- 234
           +      ++ I  S ++ +  + G +  + L R GI+LYG    +  SH M+T       
Sbjct: 181 MDGLHERFRYIHTSNSAGAIRMAGQDVPYNLVRVGIALYG----LYPSHEMETFYSFLRP 236

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
             T +++++ +++  AG+ +SYG     + D  I    +GYADG+    SG + E     
Sbjct: 237 AFTLKSQLMQVKRLEAGQTISYGATYTTSADEWIGTVPVGYADGWLRKASGFEVE----- 291

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
                  + G   PI+G++ MD  M  +       VG  + + G ++ +D++A   GT N
Sbjct: 292 -------VNGIRCPIVGRVCMDRFMIRLPKEFP--VGTDVTLVGGNVAIDELASYLGTIN 342

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++ +  +R  + Y
Sbjct: 343 YEIVCQFTSRLPRLY 357


>gi|167837061|ref|ZP_02463944.1| alanine racemase [Burkholderia thailandensis MSMB43]
          Length = 356

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 168/366 (45%), Gaps = 36/366 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +  ++  A+VK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLTVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDLDVIDRYSLTTAVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD           E+  T  
Sbjct: 124 MNSGMNRLGYAPEKFRAAWERARACPGIGQITLM-THFSDADGGRGVA-----EQMATFE 177

Query: 187 SHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQTVVTA 238
              +GI    SLA+S+ +L  P+ HF   RPGI LYG +      D  +K   ++  +T 
Sbjct: 178 RGAQGIAGARSLANSAAVLWHPSAHFDWVRPGIVLYGASPSGHSADIADKG--LKPAMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I ++    G+ V YG          I V A GYADGYP     +  E +P V    
Sbjct: 236 ASELIAVQTLAKGQAVGYGSVFVAEETMRIGVVACGYADGYPR----IAPEGTPVV---- 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA    T  Y+L+
Sbjct: 288 ---VDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAACCMTVGYELM 344

Query: 359 VRIGTR 364
             +  R
Sbjct: 345 CAVAPR 350


>gi|298369328|ref|ZP_06980646.1| alanine racemase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283331|gb|EFI24818.1| alanine racemase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 352

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 175/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L  +I L  L++N+ ++  + G  +  AV+K +AYG G  + A AL +     F V +V+
Sbjct: 4   LNARIRLDNLRHNYQTLKQIHG-GKMLAVIKADAYGHGAVRCAHALSDL-ADGFAVATVD 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E V+LR       I +L G+    E    D  NL P + S  QL     L++     P  
Sbjct: 62  EAVELRESGITNPIVLLEGVFEASEYATVDKYNLWPGVGSQWQL---EALIAHNWQTPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F HN  S    L Q   +      SH ACAD+P + +  
Sbjct: 119 VWLKMDSGMHRAGF-------FPHNYTSAYTALKQCKHVDGIVKFSHFACADEPDNGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +QLE F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 MQLEAFDLACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              +R+   R       V YG     ++ + + + A GYADGYP       S +SP    
Sbjct: 231 RLTSRVFGERVLQPHSPVGYGATFYTSKSTRVGLIACGYADGYPRRA----STNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                ++G    I+G+++MDM   ++ D+    +G  ++++G  + +++VA A+G   Y+
Sbjct: 285 -----VEGKRSRIIGRVSMDMITVEL-DASQEGLGAEVELWGDVVNINEVAEAAGMIPYE 338

Query: 357 LLVRIGTRYAKF 368
           +   +  + AKF
Sbjct: 339 IFCNV--KRAKF 348


>gi|282860859|ref|ZP_06269925.1| alanine racemase [Streptomyces sp. ACTE]
 gi|282564595|gb|EFB70131.1| alanine racemase [Streptomyces sp. ACTE]
          Length = 384

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 167/379 (44%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   + A +  A+  AVVK +AYG G    A A   AG       + +E
Sbjct: 10  RAEIDLAALRANVRVLRARASGAQLMAVVKSDAYGHGALPCARAALEAGATWLGTATPQE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR      R+        G  +   + ++   +S +  L        + G      L
Sbjct: 70  ALALREAGVGGRVMCWLWTPGGPWREAIEADIDVSVSGMWALREVVEAATAAGRPARVQL 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +  +    +   ++ G L +  + SH ACAD+P     + QL  FR
Sbjct: 130 KADTGLGRNGCQPADWPELVSAARGAEEAGTLRVTGLWSHFACADEPGHPSIAAQLTAFR 189

Query: 184 TLISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQT 234
            ++++   +G+      +A+S   L  P  HF L R GI++YG +       P    ++ 
Sbjct: 190 DMVAYAEKEGVRPEVRHIANSPATLTLPESHFDLVRTGIAMYGLSPSPALGTPADFGLRP 249

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A + L+++   G  +SYG     + ++ +A+  +GYADG P   SG         
Sbjct: 250 VMTLSASVALVKEVPPGHGISYGHHYTTSAETTLALVPLGYADGIPRHASGR-------- 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   I G +  + G++ MD  + D+    +   G    +FGP    +   +D A+A+
Sbjct: 302 ---GPVLIDGAVRTVAGRVAMDQFVVDLGGD-TPRPGARAVLFGPGDQGEPGAEDWAVAA 357

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y+++ RI  R  + +
Sbjct: 358 DTIGYEIVTRISGRVPRVH 376


>gi|300704262|ref|YP_003745865.1| alanine racemase 2, plp-binding [Ralstonia solanacearum CFBP2957]
 gi|299071926|emb|CBJ43255.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum CFBP2957]
          Length = 368

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 158/357 (44%), Gaps = 22/357 (6%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL NN       + ++R  AVVK NAYG G E++   L       F +  ++E V+LR  
Sbjct: 6   ALANNLQVARRHAPDSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLDLDEAVRLRQL 63

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
             Q  + +L G   P    ++    L   I    QL    +L          L+++TG +
Sbjct: 64  GWQGPVLLLEGFFKPEDLALVEQYRLTTTIHCEEQLRML-ELARLKGPVSVQLKINTGMS 122

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVNSVQLERFRTLISHYKG 191
           RLG +   A         + +  +  I+  +H + AD P    +  QL  F        G
Sbjct: 123 RLGFA--PAAYRAAWERARAISGIGTIVHMTHFSDADGPRGIDH--QLAAFEQATQGLPG 178

Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRK 247
            EASL++S+  L  P  H    RPG+ LYG    G     +   +   +T ++ +I I+ 
Sbjct: 179 -EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGVATDIEGTGLMPAMTLKSELIAIQD 237

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G  + YG + ++ +   I + A GYADGYP    G    H+P         + G   
Sbjct: 238 LQPGATIGYGSRFQVEQPMRIGIVACGYADGYPRHAPGWGDNHTPV-------LVDGVRT 290

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            ++G+++MDM   D+       VG  + ++G  + +D+VA A+GT  Y+L+  +  R
Sbjct: 291 RMVGRVSMDMITVDLAGVPGARVGTPVTLWGQGLPIDEVAHAAGTVGYELMCALALR 347


>gi|262066089|ref|ZP_06025701.1| alanine racemase [Fusobacterium periodonticum ATCC 33693]
 gi|291380184|gb|EFE87702.1| alanine racemase [Fusobacterium periodonticum ATCC 33693]
          Length = 354

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 176/372 (47%), Gaps = 38/372 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  L+ +     VVK NAYGLG  +IA  L   GV  F + ++EE 
Sbjct: 5   VEIDKENLKYNILKLKELANDREVLGVVKANAYGLGSVEIAKILQEVGVNFFGLANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTN--LIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           V+L+    +A   +L      ++++I  T   +   ISS+ QL F   L+   ++    L
Sbjct: 65  VELQEAGIKANFLILGA--SFEDELIEATKRGIHTAISSMQQLKF---LVRNNLNPNIHL 119

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV---QLER 181
           + DTG  RLG  + EA +  +     K   L+L  I +HL+ +D  +    +    Q+E+
Sbjct: 120 KFDTGMTRLGFEVDEAEEVINFC---KTNNLNLVGIFTHLSDSDGNTIDTKNFTLEQIEK 176

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHF----QLTRPGISLYGGTDKINKSHPMQTVVT 237
           F+ ++         +++S+GI    N+H      L R GI++Y  T    K+  ++ V T
Sbjct: 177 FKNIVKDLDLKYIHISNSAGI---TNFHDDILGNLVRAGIAMYSFTGN-KKTSCLKNVFT 232

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +++++  +K      VSYG    L  DS  AV  IGYADG    L+            G
Sbjct: 233 IKSKVLFTKKVGKDSFVSYGRHYTLPADSTYAVIPIGYADGLKKYLTK-----------G 281

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G   I  Y   I+G I MDMTM  I   L  +I++ D + +   DI +D++ +      +
Sbjct: 282 GYVLINNYRCEIIGNICMDMTMVRIPKELEKTIKISDEVTVINADI-IDNLNIPELCV-W 339

Query: 356 DLLVRIGTRYAK 367
           + +  IG R  +
Sbjct: 340 EFMTGIGRRVKR 351


>gi|183981139|ref|YP_001849430.1| alanine racemase, Alr [Mycobacterium marinum M]
 gi|183174465|gb|ACC39575.1| alanine racemase, Alr [Mycobacterium marinum M]
          Length = 388

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 178/386 (46%), Gaps = 50/386 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N   +   +G+A+  AVVK + YG G   +A     AG  +  V SV+E + 
Sbjct: 18  VDLGAIAHNVRLLRERAGSAQVMAVVKADGYGHGATAVARTALAAGAVELGVASVDEALT 77

Query: 71  LR---LYTPQARIFVLYGIH-PGQE---KIIFDTNLIPVISSVPQL-TFYSKLMSCGVSH 122
           LR   +  P     VL  +H PG +    +  D  +   ISS+ QL          G + 
Sbjct: 78  LRADGITAP-----VLAWLHAPGMDFGPALAADVQI--AISSIRQLDEVLDAARRTGTTA 130

Query: 123 PYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              +++DTG NR G++     E +     +  +   +L  +++H+  AD P   +N +Q 
Sbjct: 131 TVTVKIDTGLNRNGVAPALYPEMVTRLRQAVAEDAIRLRGLMTHMVHADAPEKPINDIQS 190

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +RF+ +  H +  G+    A L++SS  +  P+    L RPGI++Y G   + +   M  
Sbjct: 191 QRFKQMFDHARDQGVRFEVAHLSNSSATMARPDLTLDLVRPGIAVY-GLSPVPRLGDMGL 249

Query: 235 V--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           V  +T +  + L++   AGE VSYG       D+ +A+  IGYADG              
Sbjct: 250 VPAMTVKCAVALVKSVSAGEGVSYGHTWIAPHDTNVALLPIGYADG-------------- 295

Query: 293 SVF--LGGK--GFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK----L 343
            VF  LGG+    I G   P +G++ MD  + D+    L +  GD   +FGP  +     
Sbjct: 296 -VFRSLGGRLEVLINGKRRPGVGRVCMDQFLVDLGPGPLDVAEGDEAILFGPGTRGEPTA 354

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
            D A   GT +Y+++     R  + Y
Sbjct: 355 QDWADLVGTIHYEVVTSPRGRITRVY 380


>gi|307718295|ref|YP_003873827.1| hypothetical protein STHERM_c05940 [Spirochaeta thermophila DSM
           6192]
 gi|306532020|gb|ADN01554.1| hypothetical protein STHERM_c05940 [Spirochaeta thermophila DSM
           6192]
          Length = 391

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 169/379 (44%), Gaps = 41/379 (10%)

Query: 11  IDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L+ L++N   +    G  R   A VK +AYG G  ++   L   GV+   V + EEG 
Sbjct: 10  IYLSHLRHNLREIRRRVGEGRMVCAAVKADAYGHGAVEVGKVLVEEGVEMLGVATPEEGA 69

Query: 70  KLRLYTPQARIFVL---------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           +L      AR+ +L           +  G E  + D   +  ++ V +        + G 
Sbjct: 70  EL--AGVGARVLLLGLTDGAGLELAVEAGLELAVGDREYVREVARVAR--------AKGR 119

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                ++VDTG  R G + +EA+          + +L+ + +H   +D+        Q+E
Sbjct: 120 RVRVHVEVDTGMGRTGCAPEEAVGVVEEVEGAGVLELAGMWTHFPSSDEADDGFTEAQVE 179

Query: 181 RFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
           RF  ++   +  GI   L   A+S GI+  P     + RPGISLYG   +++  ++  + 
Sbjct: 180 RFLQVVGRVRARGISPGLLHAANSGGIIGHPPSWLDMVRPGISLYGYYPSEEQERTLSLL 239

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+   ++++ ++K   G  VSYG   +  RD+ IA  A GYADGY   LS         
Sbjct: 240 PVMEFVSQVVFLKKVRKGTPVSYGRTWRAPRDTWIATVAAGYADGYSRLLSSR------- 292

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---IKLDDVALAS 350
                +  I+G   P++G++ MD  M D+     +   D + +FGPD      +++A   
Sbjct: 293 ----AEVLIRGRRYPVVGRVCMDQFMVDVGPHPRVRRYDRVVLFGPDPSGPSAEELARLV 348

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT  Y++   +  R  + Y
Sbjct: 349 GTIPYEITCAVSRRVPRLY 367


>gi|228985202|ref|ZP_04145367.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228774497|gb|EEM22898.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 408

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 167/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S           S       
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANSLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|171779289|ref|ZP_02920260.1| hypothetical protein STRINF_01137 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282345|gb|EDT47772.1| hypothetical protein STRINF_01137 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 368

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 183/380 (48%), Gaps = 39/380 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  IDL A+ +N  ++ A     + A AVVK NAYG G +K+A A+++  V  F V++V+
Sbjct: 10  RALIDLGAICDNIETVKANIPEGKKAFAVVKANAYGHGAKKVAQAVHHL-VDGFCVSNVD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPY 124
           E ++LR    +  I +L  I P +  +  D ++   ++S   L   ++  +   GV+   
Sbjct: 69  EALELREAGIEETILILGVIMPNEVALARDYDITLTVASQEWLDLANEQDISLKGVN--V 126

Query: 125 ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+VD+G  R+G+ SL+EA     N   K    +  I +H A AD+  +   + QL  F 
Sbjct: 127 HLKVDSGMGRIGVRSLEEAESLMAN-LKKAGANVEGIFTHFATADEADNTKFNEQLAFFT 185

Query: 184 TLISHYKGIEASL-ASSSGILLGPNYH----FQLTRPGISLYG----GTDKINKSHPMQT 234
            ++++     A + AS+S   +   +H    F + R GI +YG    GTD I   +P++ 
Sbjct: 186 NIVNNLSEKPALVHASNSATSI---WHSETIFNIVRLGIVMYGLNPSGTD-IALPYPIKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ E+ ++ ++   AG  V YG      ++  IA   IGYADG+   L G         
Sbjct: 242 ALSLESALVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFSV------ 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G+++MD     + +   I  G  + + G +    I   D+A   
Sbjct: 296 ------LVNGQFCEIVGRVSMDQITIRLPEKFPI--GTKVTLIGQEGDKAISATDLAQKC 347

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           GT NY++L  +  R  +FY+
Sbjct: 348 GTINYEVLCLLSDRIPRFYS 367


>gi|311068669|ref|YP_003973592.1| alanine racemase [Bacillus atrophaeus 1942]
 gi|310869186|gb|ADP32661.1| alanine racemase [Bacillus atrophaeus 1942]
          Length = 393

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 184/387 (47%), Gaps = 45/387 (11%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L A+K N  ++ + +   ++  AVVK NAYG G  ++A      G  +  V SVEE
Sbjct: 10  IEVNLDAIKKNLRAIRHHIPKKSKIMAVVKANAYGHGSVEVARHALENGASELAVASVEE 69

Query: 68  GVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHP 123
           G+ LR     A I VL    +   +E   ++  L     S  Q+ +  +        + P
Sbjct: 70  GIVLRKAGITAPILVLGFTSLSCVKESAAWNIEL-----SAFQVDWIKEANEILKNEARP 124

Query: 124 YAL----QVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQ 178
             L     VDTG  RLG+  +E L    N+    K  + + I +H + AD+P + +  +Q
Sbjct: 125 NRLGIHINVDTGMGRLGVRTKEELLAVVNALTASKFLRWAGIFTHFSTADEPDTTLTKLQ 184

Query: 179 LERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH- 230
            ++F   +   K  GIE     +++++  +  P +   + R GI LYG   +  I + H 
Sbjct: 185 HDKFIRFLRFLKNQGIELPTVHMSNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLHL 244

Query: 231 -PMQTVVTAEARIILIRKALAGE--LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             ++  ++ +ARI  + K +  E   +SYG       D +IA   +GYADGY   LS   
Sbjct: 245 VKLEPALSLKARIAYV-KTMRTEPRTISYGATYIAEPDEVIATLPVGYADGYSRALS--- 300

Query: 288 SEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDS---LSIEVGDYIQIFGPDIK 342
                      +GF+  +G  VP++G++TMD+ M  + +S      EV  Y Q  G +I 
Sbjct: 301 ----------NRGFVLHRGRRVPVVGRVTMDLIMVSLGESEGKQGEEVVIYGQQKGAEIS 350

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +D+VA    T NY+++  +  R  +FY
Sbjct: 351 VDEVAEMLNTINYEVVSTLSRRIPRFY 377


>gi|126642221|ref|YP_001085205.1| alanine racemase 1 [Acinetobacter baumannii ATCC 17978]
          Length = 325

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 23/336 (6%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KI 93
           +VK NAYG G +    AL NA    F V  ++EG+++R    +  + ++ G+    E  I
Sbjct: 1   MVKANAYGHGVKDCLAAL-NAS-DAFGVACLQEGLEIRELGFEQPVTLIEGVFSEDEMPI 58

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV--DTGFNRLGLSLQEALDFTHNSFN 151
             +     VI    Q  +  K     ++    + V  ++G NRLG    E ++       
Sbjct: 59  AIEQKFECVIHHQQQFEWLIKHKQAYITQGLKVWVKLNSGMNRLGFKNPEIIEVIKTL-- 116

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
           K  G   ++  H A AD     +N  Q ++F  +      I AS  +S+ I   P  +F 
Sbjct: 117 KSEGFTCVLAMHFANAD-VDHPLNEQQKQQFLHVKETCDPILASCCNSAAIFKWPELNFD 175

Query: 212 LTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
             RPGI LYG +   DK      ++ V+T  A II +    AGE V YG      +   I
Sbjct: 176 YVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIALNHIEAGEHVGYGSTFCAQQAMDI 235

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
           A+ +IGY DGYP         +    F+     I   + P++G+++MDM   D+T++  +
Sbjct: 236 AIVSIGYGDGYP-------RAYVKQNFVA----IDSKLCPVVGRVSMDMIAIDVTNT-QV 283

Query: 329 EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           ++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 284 KLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 319


>gi|160944933|ref|ZP_02092160.1| hypothetical protein FAEPRAM212_02449 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444117|gb|EDP21121.1| hypothetical protein FAEPRAM212_02449 [Faecalibacterium prausnitzii
           M21/2]
          Length = 400

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 172/386 (44%), Gaps = 40/386 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL+ N+  + A +G     AVVK ++YG G  + A      G     V+ + E V
Sbjct: 13  EIDLEALRYNFREVKARAGALPLCAVVKADSYGHGAVQCARVFAEEGAAWLAVSCLTEAV 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYALQ 127
           +LR       I +L  + P     +   ++     S+ Q    S+  + + G  H + L+
Sbjct: 73  QLRKAGQTLPILILGHVQPAYAAALIQNDITVACYSLAQAHALSEAAVAAGGRVHIH-LK 131

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG----QLSLIISHLACADDPSSHVNSVQLERFR 183
            DTG  R+G +L+   D       +       +++ +  H + ADD +    +   E+  
Sbjct: 132 ADTGMGRIGFALRTDFDAAIREMLEACALPGLEMTGLFQHFSVADDTAPENVAYTAEQHA 191

Query: 184 TLISHYKGIEAS--------LASSSGILLGPNY------HFQLTRPGISLYG--GTDKIN 227
             +  +  ++A+          +S+G++L P++         + RPGI LYG   +D++ 
Sbjct: 192 LFVKAFHALKAAGREPALVHCDNSAGVMLHPDWPEGLPRERCMARPGIILYGYDPSDEVR 251

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
                + V+T +  + +I++   G+  SYG +    + + +A    GYADGYP  LS   
Sbjct: 252 FGR-FKPVMTLKTVVSMIKEMQPGQCASYGRRFTAEKPTKVATLCTGYADGYPRLLS--- 307

Query: 288 SEHSPSVFLGGKGFIK--GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK--L 343
                     GKG ++  G   P+LG++ MD  M D+TD   +   D   ++G  +    
Sbjct: 308 ---------CGKGVVEIHGKACPVLGRVCMDQMMVDVTDVPEVREDDEAILWGGTVSDTA 358

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + +A  + T  Y++L  +  R  + Y
Sbjct: 359 ETIARKTDTIPYEVLCGVSRRVPRVY 384


>gi|15639668|ref|NP_219118.1| alanine racemase (alr) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|3322978|gb|AAC65644.1| alanine racemase (alr) [Treponema pallidum subsp. pallidum str.
           Nichols]
          Length = 357

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 165/372 (44%), Gaps = 52/372 (13%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
            AR    VK +AYG G   +A A  + GV  F V  V+E  +LR    +A I  L    P
Sbjct: 5   RARVCLPVKADAYGHGACDVAQAALSCGVHSFAVACVQEASQLRAAGVRAPILCLST--P 62

Query: 89  GQEKI--IFDTNLIPVISSVPQLTFYSKLM--------SCGVSHPYALQVDTGFNRLGLS 138
             E+I  + +  +  VIS    +   ++ +        +CGV     +++DTG  R+G +
Sbjct: 63  TAEEISSLIEHRVHTVISERAHIALIARALRQSADTGATCGVH----VKIDTGMGRIGCA 118

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSS---HVNSVQLERFRTLISHYK--GIE 193
             EA              L  + +H + AD   +       +Q   F   + + +  GI 
Sbjct: 119 PDEACALVQMVCATPGLHLEGVCTHFSVADSVRAEDLQYTEMQRAHFMHCVQYIRKSGIS 178

Query: 194 ASL---ASSSGILLGPNYHFQLTRPGISLYG-GTDKINKS-----HPMQTVVTAEARIIL 244
             L   A+S+ +L  P  HF + RPG+  YG   + ++ +      P+  +VT   ++  
Sbjct: 179 IPLVHAANSAALLCHPRAHFDMVRPGLLAYGYAPESVHPAVRSVFLPVMELVT---QVRA 235

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS-GLDSEHSPSVFLGGKGFIK 303
           I+K  AG  VSY    +   ++ + +  IGYADG    LS GL       V +GGK +  
Sbjct: 236 IKKIPAGAYVSYQRLWRAHTETHVGILPIGYADGVMRALSPGLQ------VCIGGKWY-- 287

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK------LDDVALASGTTNYDL 357
               P++G I MD  + D+   L + VGD + +FGP          D +A  +GT  Y+L
Sbjct: 288 ----PVVGAICMDQCVVDLGTPLRVTVGDRVTLFGPQDAGGPGQGADVLASHAGTIPYEL 343

Query: 358 LVRIGTRYAKFY 369
           L  IG R  + Y
Sbjct: 344 LCAIGKRVERVY 355


>gi|260584704|ref|ZP_05852450.1| alanine racemase [Granulicatella elegans ATCC 700633]
 gi|260157727|gb|EEW92797.1| alanine racemase [Granulicatella elegans ATCC 700633]
          Length = 371

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 168/383 (43%), Gaps = 31/383 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           +H N   R+ + L A+K N  ++     N    AVVK NAYG G  ++A A +  GV  F
Sbjct: 5   IHRN--TRVIVHLNAIKQNIKAVKDHYPNTDIFAVVKANAYGHGMMEVAKAAHEEGVAGF 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            +  ++E ++LR    Q  I +L GI   ++  I+ D  +   +SS+  L     L+  G
Sbjct: 63  CIALLDEAIQLRQEGFQEPILIL-GISRLEDVPILCDYRISTTVSSLDWLEKAQTLIPDG 121

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV 177
                 L +DTG  R+G+   E +        +   Q     I +H A AD+  +     
Sbjct: 122 KQLIVHLAIDTGMGRIGVRTPEQVQEIEQFLREHDSQFVFEGIFTHFATADEADTSQFEQ 181

Query: 178 QLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSH 230
           QL+ F   +     +      ++S+  +        + R GI LYG     G  ++  + 
Sbjct: 182 QLKSFNECVEALEQRPTYVHCSNSAAAIWHEGLTTNVIRWGIGLYGLNPSNGGLRLPDTL 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P++  +T E  I+ +++  AG+ +SYG     + D  IA   +GYADGY           
Sbjct: 242 PLEKALTWETEIVFVKQLHAGDTISYGATYTCSDDEWIATLPVGYADGY----------- 290

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
               +  G+  + G   PI+G++ MD  M  +     I VG  + + G +    I  +++
Sbjct: 291 -LRAYAPGEVIVSGVRCPIVGRVCMDQCMIRL--PYEIPVGTKVTLLGKNGNERITAEEL 347

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           +  S T +Y+ L  I  R  + Y
Sbjct: 348 SHRSHTISYESLCLISDRVPRSY 370


>gi|269797315|ref|YP_003311215.1| alanine racemase [Veillonella parvula DSM 2008]
 gi|269093944|gb|ACZ23935.1| alanine racemase [Veillonella parvula DSM 2008]
          Length = 370

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 174/379 (45%), Gaps = 33/379 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+ + ++ N   + ++L   + + AV+K N YG G   +       G +   V   EE
Sbjct: 6   LTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVAIPEE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--- 124
            V LR       I++L    P   +++ DTN IP +     L   +K+     +H     
Sbjct: 66  SVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLESLNKVAD---NHDMIIR 122

Query: 125 -ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF 182
            A+ VDTG +R+G+  ++A++F     + +  ++    SH++ AD    SH +S Q ++F
Sbjct: 123 VAVAVDTGMHRIGIKPEDAIEFIKRIESYENLEIDGFFSHMSNADAADQSHAHS-QTQKF 181

Query: 183 RTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
             ++   +          SLA+S+G+L   +  F   RPGI  YG    ++  + +  + 
Sbjct: 182 HRMVDEIRAFRPEADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + ++ ++   AGE + YG     T    IA   +GYADGYP +LS          
Sbjct: 242 VLSFHSEVVHVQHIPAGEGIGYGSTYITTEPMTIATIPVGYADGYPRSLSNR-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I G   P++G+I MD  M  + D+++++ GD + + G      I   ++A  +
Sbjct: 294 ---GTVLIHGTRCPVVGRICMDQFMVSVPDTITVKPGDKVVLLGSQGHESISALEIAALA 350

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++      R  + Y
Sbjct: 351 STIPYEIFCGFSERVPRQY 369


>gi|82919488|gb|ABB95691.1| D-alanine racemase [Bacillus subtilis]
          Length = 370

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 171/376 (45%), Gaps = 35/376 (9%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL+A+K N  +M    G +    AVVK NAYG G  + A A  +AG     V  ++E 
Sbjct: 3   EIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAGASCLAVAILDEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    +A I VL  + P    I  + ++     SV  L   ++    G  H + L+V
Sbjct: 63  ISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHTKKGSLH-FHLKV 121

Query: 129 DTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           DTG NRLG+  +E +         N +L +   + +H A AD+       +Q ERF+ LI
Sbjct: 122 DTGMNRLGVKTEEEVQNVMAILDRNPRL-KCKGVFTHFATADEKERGYFLMQFERFKELI 180

Query: 187 S--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------GTDKIN-KSHPMQTVVT 237
           +    K +    A+S+  L      F   R GI +YG       +D+I  +  P  T+ +
Sbjct: 181 APLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADMSDEIPFQLRPAFTLHS 240

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + + LIRK   GE VSYG +    +D+ I    +GYADG+   L G D          
Sbjct: 241 TLSHVKLIRK---GESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGTDI--------- 288

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               +KG  + I G+I MD  M ++        G  + + G      I +D++A    T 
Sbjct: 289 ---LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDEIAGRLETI 343

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   I +R  + +
Sbjct: 344 NYEVACTISSRVPRMF 359


>gi|294793102|ref|ZP_06758248.1| alanine racemase [Veillonella sp. 6_1_27]
 gi|294794860|ref|ZP_06759995.1| alanine racemase [Veillonella sp. 3_1_44]
 gi|294454222|gb|EFG22596.1| alanine racemase [Veillonella sp. 3_1_44]
 gi|294456047|gb|EFG24411.1| alanine racemase [Veillonella sp. 6_1_27]
          Length = 374

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 174/379 (45%), Gaps = 33/379 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+ + ++ N   + ++L   + + AV+K N YG G   +       G +   V   EE
Sbjct: 10  LTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVAIPEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--- 124
            V LR       I++L    P   +++ DTN IP +     L   +K+     +H     
Sbjct: 70  SVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLESLNKVAD---NHDMIIR 126

Query: 125 -ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF 182
            A+ VDTG +R+G+  ++A++F     + +  ++    SH++ AD    SH +S Q ++F
Sbjct: 127 VAVAVDTGMHRIGIKPEDAIEFIKRIESYENLEIDGFFSHMSNADAADQSHAHS-QTQKF 185

Query: 183 RTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
             ++   +          SLA+S+G+L   +  F   RPGI  YG    ++  + +  + 
Sbjct: 186 HRMVDEIRAFRPEADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + ++ ++   AGE + YG     T    IA   +GYADGYP +LS          
Sbjct: 246 VLSFHSEVVHVQHIPAGEGIGYGSTYITTEPMTIATIPVGYADGYPRSLSNR-------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   I G   P++G+I MD  M  + D+++++ GD + + G      I   ++A  +
Sbjct: 298 ---GTVLIHGTRCPVVGRICMDQFMVSVPDTITVKPGDKVVLLGSQGHESISALEIAALA 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++      R  + Y
Sbjct: 355 STIPYEIFCGFSERVPRQY 373


>gi|317152532|ref|YP_004120580.1| alanine racemase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942783|gb|ADU61834.1| alanine racemase [Desulfovibrio aespoeensis Aspo-2]
          Length = 384

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 162/359 (45%), Gaps = 39/359 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++++I L  L  N      + G      V+K +AYG G  ++   L   G     V  V 
Sbjct: 7   IQVEISLDNLAANVRRFQGVCGT--VIPVIKSDAYGHGLAEVTRTLAAEGATTLAVGYVN 64

Query: 67  EGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E VKLR      RI  L G +       +++ +++  I+++ QL+  +            
Sbjct: 65  EAVKLRCLGWTGRILALLGPVDEADAAALWEHDILAAIANMDQLSRVAGAARTRGRLDIC 124

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS-HLACADDPSSHVN-SVQLERFR 183
           L+ DTG  RLG    E L    ++       + ++ S HLA AD P    N ++Q  RF+
Sbjct: 125 LKFDTGMRRLGFR-PEGLAALVDALRANPALVPVMASTHLASADVPEHEANVTMQAGRFQ 183

Query: 184 TLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGG-----TDKINKSHPMQT 234
           +++   +     +EA++A+S+G +          R GI++YGG     T    +   +  
Sbjct: 184 SVLDGLEQAGYQVEANIANSAGAMAHKACRMDSMRLGIAMYGGNPFHGTSWEERGQGLLP 243

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   A ++ +     GE VSYG      RD  +AV  +GYAD Y  +LS          
Sbjct: 244 TMQVSAPVLHVHTLRQGEGVSYGWTHVAGRDCEVAVVGVGYADNYSRSLS---------- 293

Query: 295 FLGGKGF--IKGYMVPILGKITMDMTMFDIT----DSLSIEVGDYIQIFGPDIKLDDVA 347
               +GF  IKGY VPILG++ M MT+ D+T    + L+ E+GD     GP ++  D A
Sbjct: 294 ---SRGFMNIKGYRVPILGRVCMQMTVVDVTGLMGEGLAGELGD-----GPGVRPGDQA 344


>gi|323439214|gb|EGA96941.1| alanine racemase [Staphylococcus aureus O11]
          Length = 372

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 180/384 (46%), Gaps = 49/384 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   F V +++E 
Sbjct: 1   MNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEA 60

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA-- 125
           ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +   +S      
Sbjct: 61  IELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK-NISGEQEKK 115

Query: 126 ----LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVN 175
               +++DTG  RLG+    + QE ++       ++  QL    + +H ACAD+P   + 
Sbjct: 116 LWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFACADEPGD-MT 169

Query: 176 SVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKS 229
           + Q +RF+ +++     E     +S+G LL         RPGISLYG        +  K 
Sbjct: 170 TEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKV 229

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G    
Sbjct: 230 H-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQG---- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345
                F+     + G+   ++G++ MD T+  + D   ++ GD + +          ++ 
Sbjct: 285 ----SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESSQSVEV 334

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T NY++L  +  R  + Y
Sbjct: 335 AAEKQHTINYEVLCNLSRRLPRIY 358


>gi|254514051|ref|ZP_05126112.1| alanine racemase [gamma proteobacterium NOR5-3]
 gi|219676294|gb|EED32659.1| alanine racemase [gamma proteobacterium NOR5-3]
          Length = 356

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 169/376 (44%), Gaps = 57/376 (15%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYG--LGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           + +N   +  L+ ++R  A VK +AYG  +G   I+ A     V  F V S+ E + +R 
Sbjct: 14  IAHNARRVRELAPDSRIMACVKSDAYGHDIG---ISSAALADHVDGFAVASMNEALSVRS 70

Query: 74  YTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHPYALQV 128
                 + +L G     E        L   I+   QL +  +     +SC       +++
Sbjct: 71  LHADKPVLMLEGPQTFDEIAEAAHKKLTLCINEWHQLEWLERSAPGELSCW------MKI 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLS--------LIISHLACADDPSSHVNSVQLE 180
           DTG +RLG        F+  S  + L +L+        ++ +H + AD P  +  S QL 
Sbjct: 125 DTGMHRLG--------FSPESVPQALARLTPHIKTSDLVLCTHFSSADLPGDNGVSEQLR 176

Query: 181 RF-----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPM 232
            F     +T  +H      S A+S+ I+     H    RPG  LYGG+   D    S  +
Sbjct: 177 CFDESTAQTSFAH------STANSAAIIRTATSHRDWVRPGYMLYGGSPLADATPASVNL 230

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +   A +I +R+   GE V Y G+ +  R S IA  A GY DGYP         H+P
Sbjct: 231 KPAMEFSAEVISLRELAQGERVGYSGRWEARRPSKIATIAAGYGDGYP--------RHAP 282

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
               G    I+G  +P+ G+++MDM   D+TD+ ++++G    ++G    +D++A  S T
Sbjct: 283 D---GTPVLIEGQCLPLAGRVSMDMITVDVTDNPAVKIGSRAILWGAQPGVDEIARHSST 339

Query: 353 TNYDLLVRIGTRYAKF 368
             Y+LL  +  R  + 
Sbjct: 340 IGYELLAGMPKRVPRI 355


>gi|169334902|ref|ZP_02862095.1| hypothetical protein ANASTE_01308 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257640|gb|EDS71606.1| hypothetical protein ANASTE_01308 [Anaerofustis stercorihominis DSM
           17244]
          Length = 377

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 164/379 (43%), Gaps = 38/379 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +KI+L  L NN+  +       +   V+K +AYG G E  A  L + G   F V+SV E 
Sbjct: 8   VKINLDNLINNYRVIKNKVKGKKVIPVIKADAYGHGAEICAKILMSEGADLFAVSSVYEA 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR Y   A + +L G  P  ++ I       +I ++  L F  KL          ++V
Sbjct: 68  MCLRDYGIDADVLIL-GYVP--DRKINKIIDNDIIPTIYNLDFAKKLNEEAGKKNKKIKV 124

Query: 129 ----DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACADDPSSHVNSVQLE 180
               +TG NRLG +  E       +F    G  +LI     SH A +D+     ++ Q E
Sbjct: 125 HIKINTGMNRLGFNKDE----IDEAFKLLKGLDNLIYEGLFSHFATSDEVDKSYSNKQFE 180

Query: 181 RFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGG-----TDKINKSH 230
            F   I   K  +       +A+S+ I     Y     R GI LYG        +IN   
Sbjct: 181 IFDYAIKKSKEYDLGVTINHIANSAAITDLDEYSLDAVRAGIVLYGVYPSEVKPEINPYK 240

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P+ +  T    I  I K    E V YG        + +AV  +GYADGY   LS     +
Sbjct: 241 PVMSFYTTITNIFHIDK---DETVGYGRTFTAKEKTKVAVMCVGYADGYNRKLS-----N 292

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
              V +  K     Y   ++G + MDMTM +I +   IE+GD ++IFG +I +  +A   
Sbjct: 293 KGEVLINNK-----YKAKVIGNVCMDMTMLEIPEEADIEIGDNVEIFGENINISSLAEIC 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y+LL  I  R  + Y
Sbjct: 348 ETIPYELLCCINKRVKREY 366


>gi|295111805|emb|CBL28555.1| alanine racemase [Synergistetes bacterium SGP1]
          Length = 383

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 174/377 (46%), Gaps = 32/377 (8%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL AL+ N  S+  L     ++ AVVK +AYG G  ++A  L   GV    V  V   
Sbjct: 14  EIDLDALEGNVRSLKGLLKPGVKSLAVVKADAYGHGIVEVARKLETCGVDMLAVAYVMAA 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127
           V LR    +  I  L    P    ++++ ++   +  +   L       + G +    ++
Sbjct: 74  VTLRKNGIKLPILCLGQSAPSLAPLMWEYDVTQAVGDLENGLALSRAASAAGRTIKIHVK 133

Query: 128 VDTGFNRLGL----SLQEALDFTHNSFNKKLG-QLSLIISHLACAD-DPSSHVNSVQLER 181
           VDTG  R+G     S  EA+     +  +  G +   + SH A AD DP      +Q+ +
Sbjct: 134 VDTGMGRIGFYWPESGWEAVADEMATLCRLPGLEAEGLFSHFANADGDP--EYTRMQMAK 191

Query: 182 F---RTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPM 232
           F   R  ++  +G+   L   A+S G+L  P  H  + R G+ LYG     +++     +
Sbjct: 192 FAAARQALAD-RGVTFRLGHIAASLGVLRYPEAHLDMGRFGLVLYGYASSDEEVESPAEL 250

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T +ARI  +R+   G  + YGG   L RDS++AV   GYADGYP  LS   S    
Sbjct: 251 KPVMTLKARIAAVRELPKGAKIGYGGTAVLKRDSVLAVLPTGYADGYPRALSNRMSV--- 307

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                   +I   + P++G++ MDM M D+TD   +  GD   +    + L   ALA  T
Sbjct: 308 --------YIHDRLCPVVGRVCMDMFMADVTDVPGVRAGDEAVLLDGRLML-KAALAGHT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
             ++LL  I  R  + +
Sbjct: 359 IIHELLSCIMPRVPRVF 375


>gi|291459573|ref|ZP_06598963.1| alanine racemase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417851|gb|EFE91570.1| alanine racemase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 429

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 172/376 (45%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEG 68
           +DL  ++ N  ++   L    R  +V+K +AYG G   +A A+ +  + DF+ V + EEG
Sbjct: 45  VDLDIIRENVRNARKLLPKGCRFCSVLKADAYGHGAPAVASAIDD--LSDFYAVATPEEG 102

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
             LR +  Q  I VL  +      ++ +  + P +  + Q    SK     G +    L 
Sbjct: 103 ALLRAHGFQKPILVLGAVSDRAYPMLLERRIRPAVFLLSQAKALSKAAGEAGCTALLHLA 162

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTL 185
           VDTG  R+G++ +E            L  L +  I +H + AD+     + +Q ERFR  
Sbjct: 163 VDTGMGRIGIASEEEGSAELALSIAALPNLKVEGIFTHFSTADETDKEFSFLQRERFRRF 222

Query: 186 ISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVT 237
                 +G+   +   A+S+GI+      F + R GI+LYG        +   P++  ++
Sbjct: 223 CEKLSERGLSIPIRHCANSAGIIASIGTDFDMVRDGIALYGIYPSRAAESARLPLKAALS 282

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A++  +R+  A   +SYG      R++ +AV  +GY DG P  LS             
Sbjct: 283 WFAKVSAVRRLPASSPISYGRTFTTARETELAVIPLGYGDGLPRLLSNR----------- 331

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS----GTT 353
            +  I+G   PILG+I MD  M D+T  L +  GD + + G D + +++ L      G  
Sbjct: 332 AEVLIRGRRCPILGRICMDQFMADVT-GLGVRRGDRVTLLGRDGE-EEIGLYDWERLGAF 389

Query: 354 NYDLLVRIGTRYAKFY 369
            Y++L  +G R  + Y
Sbjct: 390 PYEVLCGLGKRVPRLY 405


>gi|260437330|ref|ZP_05791146.1| alanine racemase [Butyrivibrio crossotus DSM 2876]
 gi|292810242|gb|EFF69447.1| alanine racemase [Butyrivibrio crossotus DSM 2876]
          Length = 372

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 169/369 (45%), Gaps = 29/369 (7%)

Query: 17  KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76
           KN   +   +  + +  A+VK NAYG G  ++A A+ +  V  F V +V E + LR    
Sbjct: 18  KNIEEAKKRVGSDTKIMAIVKANAYGHGAVEVAGAIKDK-VYGFAVATVREALTLRESGV 76

Query: 77  QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRL 135
              I VL  +   + + +   N+I  + +       S+  +  G++    ++++TG NR+
Sbjct: 77  DNPILVLGYVCKAEYESVIRNNIIFAMLTKDMAKDISECAARIGITAKCHIKINTGMNRI 136

Query: 136 GLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGI 192
           G  + +EA+D        +      I  H A AD         Q E F  +IS    +GI
Sbjct: 137 GFPVNEEAIDDIAELTGYEGLDCEGIFMHFATADSADKSYAKHQFELFMDVISKLEKRGI 196

Query: 193 EASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIILIRK 247
           +  +   A+S+ I+  P Y   + R GI LYG   +D+++ S      +  +  +I +++
Sbjct: 197 QFKIRHCANSAAIIDLPEYKLDMVREGIILYGLKPSDEVDASMKYYPALELKTHVIFVKE 256

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF--IKGY 305
             AGE +SYG      R   IA  AIGYADGYP +LS              KG+  I G 
Sbjct: 257 LGAGESISYGRTFVTDRPMRIATVAIGYADGYPRSLS-------------NKGYVLIHGK 303

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRI 361
              ++G++ MD  M D+TD   + V D + + G D    I  ++V   SG  NY+ +  I
Sbjct: 304 KAKVVGRVCMDQMMIDVTDIPDVNVEDVVTVVGKDGSEEITFEEVGELSGRFNYEFVCDI 363

Query: 362 GTRYAKFYT 370
             R  + Y 
Sbjct: 364 SERVERKYV 372


>gi|240126095|ref|ZP_04738981.1| Alr [Neisseria gonorrhoeae SK-92-679]
 gi|268684684|ref|ZP_06151546.1| alanine racemase [Neisseria gonorrhoeae SK-92-679]
 gi|268624968|gb|EEZ57368.1| alanine racemase [Neisseria gonorrhoeae SK-92-679]
          Length = 352

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 177/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+S     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESSMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +   +    ++ V+
Sbjct: 172 IQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGDSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|329902874|ref|ZP_08273284.1| Alanine racemase, catabolic [Oxalobacteraceae bacterium IMCC9480]
 gi|327548584|gb|EGF33244.1| Alanine racemase, catabolic [Oxalobacteraceae bacterium IMCC9480]
          Length = 361

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 172/365 (47%), Gaps = 29/365 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEGV 69
           ID++AL++N          A T AVVK NAYG G E+    +   G  D   +   E  V
Sbjct: 9   IDISALQHNLAEARRRMPAAITWAVVKANAYGHGLER---GMRAFGAADGLALVEPEAAV 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
            LR    +  I +L G     +  +   + + +    PQ   + +           L+++
Sbjct: 66  ALRELGWRKPILLLEGCFDLIDFRLAAQHHLELTIHCPQQIGWLEQTRFDAPVNVHLKMN 125

Query: 130 TGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERFRTLI 186
           +G NRLG   Q+ A  +     N ++G+++L+ +H A AD  D      + Q+ RF+   
Sbjct: 126 SGMNRLGFMPQDFAAAYQRLRVNPQVGKIALM-THFANADAADTPGMTLAEQVRRFQL-- 182

Query: 187 SHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-----MQTVVTAE 239
               G++A  ++++S+  LL  +      RPGI LYGGT   + S P     +++ +T +
Sbjct: 183 -GSAGLDAPWNISNSAATLLHADMRSHEVRPGIMLYGGTPGTHTSTPAGAFGLRSAMTLQ 241

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I +++   G+ V YG +        I V A GYADGYP         H+PS   G  
Sbjct: 242 SELIAVQQIHPGDAVGYGSRFIAETPMTIGVVACGYADGYP--------RHAPS---GTP 290

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G ++MDM   D+T   +   G  + ++G  + +D+VA A+GT  Y+L+ 
Sbjct: 291 VLVDGVRTRLVGNVSMDMLTVDLTPIPTAHHGSCVTLWGDGLPIDEVAQAAGTIGYELMC 350

Query: 360 RIGTR 364
            I  R
Sbjct: 351 AIAPR 355


>gi|320354045|ref|YP_004195384.1| alanine racemase [Desulfobulbus propionicus DSM 2032]
 gi|320122547|gb|ADW18093.1| alanine racemase [Desulfobulbus propionicus DSM 2032]
          Length = 374

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 167/376 (44%), Gaps = 37/376 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+++  +AL +N+      +  A    +VK + YG G    A      G   F V    E
Sbjct: 6   RVEVSRSALIHNFGICRQWADGAAIMPLVKADGYGHGMIDCARVFAEQGAAAFGVAEAIE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI---SSVPQLTFYSKLMSCGVSHPY 124
           GV+LR       I VL G+ P     + + +L PV+   + VP+L+  + L    +    
Sbjct: 66  GVRLRAAGITQPILVLAGVIPQTLPTMVEADLTPVVVDAAIVPELSRLAGLQRREIG--V 123

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++D G  R G+  ++ +D           +L  +++H  C+D+P S  NS Q+   RT
Sbjct: 124 HVKLDAGMGRQGVLPEDFVDLVRTVRGAPHLRLDGVMAHFPCSDEPQS-ANSAQV--LRT 180

Query: 185 LISHYKGIEA--------SLASSSGILLGPNYHFQLTRPGISLY-----GGTDKINKSHP 231
             +    + A         LA+S G+         + RPGI+LY     G T +   + P
Sbjct: 181 FTATTASLAALTGGGCCLHLANSGGLFYVAGARLDMVRPGIALYGYYPDGETGRAAAAPP 240

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +    RII +R+  AG  + Y      +R S IAV  +GY DGY   LS      
Sbjct: 241 LLRPAMRFATRIIQVRRVPAGSGLGYSHLFTTSRPSTIAVLPVGYDDGYLRKLSNR---- 296

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   +  I G  VP +G+I+M++T+ D+T    ++VGD   + G      I  D++
Sbjct: 297 -------AQVLIHGRRVPTVGRISMNLTLVDVTGIDGVQVGDEAVLLGRQGEETITADEI 349

Query: 347 ALASGTTNYDLLVRIG 362
           A    T +Y++L   G
Sbjct: 350 AAWMETISYEVLCLFG 365


>gi|166031784|ref|ZP_02234613.1| hypothetical protein DORFOR_01485 [Dorea formicigenerans ATCC
           27755]
 gi|166028237|gb|EDR46994.1| hypothetical protein DORFOR_01485 [Dorea formicigenerans ATCC
           27755]
          Length = 389

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 179/387 (46%), Gaps = 49/387 (12%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFFVTS 64
           ++DL A+  N+  M A +    +  AV+K + YG G  +IA    P  Y  G   + V +
Sbjct: 10  RVDLDAIFYNFQMMKANIKDGVQMIAVIKTDGYGHGAVQIARLLEPVDYIWG---YAVAT 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E V LR    +  I VL  I P Q + + +  +        ++T Y+  M+ GVS+  
Sbjct: 67  LDEAVVLRKNEIKKPILVLGCIFPDQWEAMIENEV--------RMTTYTVEMAKGVSNLA 118

Query: 125 A---------LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHV 174
                     +++DTG +RLG  + E         +K  G +L  + +H A AD+     
Sbjct: 119 VKMGKDAYIHIKLDTGMSRLGFQIHEDSVDAIEEISKMPGLKLEGMFTHFAKADETDKAY 178

Query: 175 NSVQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
             VQ+ ++  +    K    +      ++S+GI+     +  L R GIS+YG   ++++ 
Sbjct: 179 TDVQIGKYNYMRDELKKRGVTFPIYHCSNSAGIIDIKKANMDLVRAGISIYGLYPSEEVE 238

Query: 228 KSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           K + P++  +   + +  ++    G  VSYGG     +++ +A   +GY DGYP +LS  
Sbjct: 239 KKNVPLRPAMELISHVSYVKTVPEGTPVSYGGTYVTEKETSLATIPVGYGDGYPRSLSN- 297

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                      G   I G   PI G++ MD  M D+TD   ++ GD + + G D    + 
Sbjct: 298 ----------KGYVLIHGKKAPIRGRVCMDQFMVDVTDIPDVKFGDKVTLVGKDGDEFLP 347

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++ ++  SG  NY+ +  +G R  + Y
Sbjct: 348 VETLSDLSGRFNYEFVCDLGKRIPREY 374


>gi|323442408|gb|EGB00037.1| alanine racemase [Staphylococcus aureus O46]
          Length = 372

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 181/385 (47%), Gaps = 51/385 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   F V +++E 
Sbjct: 1   MNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEA 60

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA-- 125
           ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +   +S      
Sbjct: 61  IELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK-NISGEQEKK 115

Query: 126 ----LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVN 175
               +++DTG  RLG+    + QE ++       ++  QL    + +H ACAD+P   + 
Sbjct: 116 LWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFACADEPGD-MT 169

Query: 176 SVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKS 229
           + Q +RF+ +++     E     +S+G LL         RPGISLYG        +  K 
Sbjct: 170 TEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKV 229

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G    
Sbjct: 230 H-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQG---- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-----GPDIKLD 344
                F+     + G+   ++G++ MD T+  + D   ++ GD + +       P   ++
Sbjct: 285 ----SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQ-SVE 333

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
             A    T NY++L  +  R  + Y
Sbjct: 334 VAAEKQHTINYEVLCNLSRRLPRIY 358


>gi|329770407|ref|ZP_08261789.1| alanine racemase [Gemella sanguinis M325]
 gi|328836530|gb|EGF86190.1| alanine racemase [Gemella sanguinis M325]
          Length = 375

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 172/385 (44%), Gaps = 47/385 (12%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL ++L AL  N+  +N LS      A+VK N+YGLG + I+  LY  GV+ F V + EE
Sbjct: 8   RLIVNLDALLRNYEKLNNLSDKKVGLAIVKANSYGLGSKVISKLLYENGVRHFAVATFEE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++L+    ++ I VL   +P   K   + N+     S   L    K L S        +
Sbjct: 68  ALELKEVIKESLILVLGVTNPKNVKYAVENNISLTCPSKEWLEEAIKELDSITGKLKVHV 127

Query: 127 QVDTGFNRLG-------LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           +++TG NR+G       L + E LD+    F         + SH + AD  ++  +  Q 
Sbjct: 128 KIETGMNRIGTFEEKEILEIDELLDYPKVEFEG-------VFSHYSNADGENNDYDDYQT 180

Query: 180 ERFRTLISHYK------GIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINK 228
             F  L++ +K       IE S  +        NY+  L+R GISLYG       +K+NK
Sbjct: 181 ANFNRLVALFKHKPRYVHIENSAGTVKYNDRDDNYN--LSRIGISLYGCYPSKNIEKLNK 238

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V +  +++  +++   G  V YG   + + D  IA   IGYADG      G   
Sbjct: 239 LE-LEPVASLVSKVTHVKRIPKGTKVGYGISYETSEDEYIATVPIGYADGLLRRAQGF-- 295

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344
                     K  + G    I+G++ MD  M   ++   I+VGD + +FG      I +D
Sbjct: 296 ----------KLNVAGEECEIVGRVCMDQLMVRCSE--KIKVGDDVLVFGEYNNQKISVD 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           + A    T +Y++   I  R  + Y
Sbjct: 344 EFADYQKTISYEIFCCINQRVPRKY 368


>gi|302333717|gb|ADL23910.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 382

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 186/394 (47%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 62  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 116

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 117 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 171

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q +RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 172 ADEPGD-MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 230

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 231 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 289

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 290 RIMQG--------SFVN----VNGHQCEVVGRVCMDQTIVKVPD--QVKAGDSVILIDNH 335

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++  A    T NY++L  +  R  + Y
Sbjct: 336 RESPQ-SVEVAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|229029807|ref|ZP_04185878.1| Alanine racemase [Bacillus cereus AH1271]
 gi|228731522|gb|EEL82433.1| Alanine racemase [Bacillus cereus AH1271]
          Length = 408

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  IEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNAAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHAVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +++I  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKIAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|328954808|ref|YP_004372141.1| alanine racemase [Coriobacterium glomerans PW2]
 gi|328455132|gb|AEB06326.1| alanine racemase [Coriobacterium glomerans PW2]
          Length = 383

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 173/389 (44%), Gaps = 36/389 (9%)

Query: 3   SNEFLRLKIDLTA-LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +  +  ++ID  A L+N       L    R   V+K +AYG G  + +  + +AG   F 
Sbjct: 8   ATRWAWVEIDRGAMLRNTRAFKKMLKPRQRLCCVLKADAYGHGAVESSKIMRSAGADMFA 67

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVI-SSVPQLTFYSKLMSC 118
           V +V EG++LR     A + VL    P  + I  + + +L+P + +S   L F    +  
Sbjct: 68  VATVAEGIELRRGGCSAPVLVLG--EPPCDAIPELLENDLMPAVYTSEFALAFGECAVQV 125

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSV 177
                Y L ++TG NR+G+   + + F     F++ + Q   + +H A ADDP      +
Sbjct: 126 DKVGKYHLAIETGMNRIGVHYTKVVSFRRGIEFHRGI-QCDGVFTHFATADDPCGWDYKL 184

Query: 178 QLERFRTLISHYK--GIEASLA---SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           Q  RF   +   +  G E  +    ++   +L P  H  + R GI LYG    D   +  
Sbjct: 185 QCTRFDEAVQAMRDAGFECGIVHCDNTPASILDPESHHDMIRVGIGLYGLQPADATRERI 244

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSE 289
            +  V++  AR++ +     GE V YG   ++ R ++ I    IGYADG   TL    S 
Sbjct: 245 RLDPVMSVRARVMRVAYPSMGEGVGYGFTYRVPRATVQICTLPIGYADGLARTL----SN 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-----IEVGDYIQIFGPD---- 340
               ++ GG+       +  +G I MD TM  I  + +      E GD + I G D    
Sbjct: 301 RMDVLYRGGR-------IRQVGNICMDQTMVAIQQTPAEPIPEAEYGDLMTIVGRDGDAE 353

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +D++A    T NY++    G R  K Y
Sbjct: 354 VSMDEMARLRNTINYEVACDFGMRLEKIY 382


>gi|319941566|ref|ZP_08015892.1| alanine racemase [Sutterella wadsworthensis 3_1_45B]
 gi|319804936|gb|EFW01778.1| alanine racemase [Sutterella wadsworthensis 3_1_45B]
          Length = 370

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 160/360 (44%), Gaps = 22/360 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEEG 68
           +IDL AL++N   M + +      AVVK NAYG G +    A  +A G+    +   E  
Sbjct: 21  EIDLEALRHNLGVMRSKAAGRALWAVVKANAYGHGLDNAVTAFADADGLATIDLCDAE-- 78

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQ 127
             +R      RI +L G     +     T  +  +   P Q+          V     ++
Sbjct: 79  -IVRRCGWHKRILLLEGFFDAADIEPLQTLKVETVVHSPWQIAILRAAKPKDVR--VHVK 135

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           V++G NRLG    EA             ++   ++H A A+  + H   V ++     + 
Sbjct: 136 VNSGMNRLGFRPSEAPAAAAQLAAIPGVRVMDYVTHFANAEQSAVHA-PVTVDDQLAAMG 194

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPMQTV--VTAEARIIL 244
                +A LA++  IL  P    Q  R G++LYG   D+   S  +  +  +T  A II 
Sbjct: 195 GLAREQACLANTGAILFHPEVQGQAVRAGVALYGVSPDEAVTSEALSLIPAMTLGAEIIA 254

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +++   GE V YG +    R S IAV A GYADGYP ++             G   +++G
Sbjct: 255 LQQVRPGESVGYGSRWTAQRPSRIAVVACGYADGYPRSMPD-----------GAPVWVEG 303

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              P+ G ++MDM   D+TD    +VG  ++++G  I ++D+A   GT  Y+LL  +  R
Sbjct: 304 SQAPLAGAVSMDMLTIDVTDIPEADVGSKVELWGRHIAVNDLARRCGTIGYELLCALARR 363


>gi|325661284|ref|ZP_08149911.1| alanine racemase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331084962|ref|ZP_08334049.1| alanine racemase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325472791|gb|EGC76002.1| alanine racemase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330408662|gb|EGG88127.1| alanine racemase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 388

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 175/386 (45%), Gaps = 45/386 (11%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
           KIDL A+  N   M   L       AV+K + YG G  ++A  L +   V  + V +++E
Sbjct: 10  KIDLDAVAWNMEQMKKNLKEGTEMVAVIKTDGYGHGAVQVASMLESYDYVWGYAVATLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS------ 121
            V LR    Q  I VL  I P Q   +    +        ++  Y+K M+  +S      
Sbjct: 70  AVVLRAAEIQKPILVLGCIFPDQYWEMLKYEI--------RMNVYTKEMAEAISALAVEK 121

Query: 122 --HPYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNS 176
               Y  +++DTG  RLG S +E+          +L  L L  + +H A AD+       
Sbjct: 122 GEQAYVHIKLDTGMARLGFSAEESS-IEEIKEIAELPNLVLEGVFTHFAKADEEDKTFTM 180

Query: 177 VQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
           +QLE+F  +    +    +      ++S+GI+      + L R GI++YG   +++++K 
Sbjct: 181 MQLEKFEWMTQRLEEEGVTFPYVHASNSAGIIDVRRADYNLVRAGIAIYGLYPSEEVDKE 240

Query: 230 H-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  ++ ++ I  ++   AG  VSYGG         IA   IGY DGYP +LS    
Sbjct: 241 KVQLKPALSLKSHIAFVKDIPAGTPVSYGGDFVSEHQMRIATIPIGYGDGYPRSLSDT-- 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G   PI+G+I MD  M D++D   ++ GD + + G D    + ++
Sbjct: 299 ---------GYVLIRGKKAPIIGRICMDQFMVDVSDIPEVKFGDKVTLIGRDQEEYLPVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370
            ++  SG  NY+ +  +G R  + Y 
Sbjct: 350 KLSELSGRFNYEFVCDLGKRIPRVYV 375


>gi|300779772|ref|ZP_07089628.1| alanine racemase [Corynebacterium genitalium ATCC 33030]
 gi|300533882|gb|EFK54941.1| alanine racemase [Corynebacterium genitalium ATCC 33030]
          Length = 397

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 176/387 (45%), Gaps = 47/387 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+ +N   +   +G A+   VVK NAY  G E++ P +  AG   F V ++ E 
Sbjct: 28  LHIDLDAIAHNTALLKRGAGAAKLMCVVKANAYNHGVERVVPVMDKAGADAFGVATLAEA 87

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV--PQLTFYSKLMSCGVSHPYAL 126
            +++  T +  +  ++   PG+         IP    V  P LT    L+      P  L
Sbjct: 88  SQVKRLTDKPVLAWMWA--PGEP--------IPAGIEVGAPTLTHLRTLIDVSPHTPVHL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            +DTG NR G+  ++  D    + N  L  +  ++SHLACAD+P +  N+ Q E F+  I
Sbjct: 138 MLDTGMNRSGIDEEDWADAFAIATNAGL-TVRGVMSHLACADEPGNPFNTEQYESFQRGI 196

Query: 187 SHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--------GTDKINKSHP-- 231
           +  +  G++     LA+S G L      F+  R G++LYG        G +    + P  
Sbjct: 197 ALARSMGLDVPCNHLANSPGTLSRKELAFEQIRAGVALYGLDPVAPETGPEAAPGTAPNT 256

Query: 232 ------MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 ++  +T  A I+ ++    GE  SYG       D   AV  +GYADG P     
Sbjct: 257 DFDRAQLRPAMTWSAEIVAVKLIGKGEGASYGLTWTAPEDGYTAVVPVGYADGLPRAW-- 314

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGP-DIKL 343
              + +  V + G  +      P +G+I MD  +  + D+ + ++ GD   IFG   +  
Sbjct: 315 ---QDAVEVTVNGARY------PQVGRICMDQFIVWLGDNPADVQPGDTAVIFGEGGMTA 365

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
            ++A  +GT +Y+++     R  + Y+
Sbjct: 366 AELADRAGTIHYEVVCSPCGRVERQYS 392


>gi|240113626|ref|ZP_04728116.1| Alr [Neisseria gonorrhoeae MS11]
 gi|254494089|ref|ZP_05107260.1| alanine racemase [Neisseria gonorrhoeae 1291]
 gi|268599686|ref|ZP_06133853.1| alanine racemase [Neisseria gonorrhoeae MS11]
 gi|226513129|gb|EEH62474.1| alanine racemase [Neisseria gonorrhoeae 1291]
 gi|268583817|gb|EEZ48493.1| alanine racemase [Neisseria gonorrhoeae MS11]
          Length = 352

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 177/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+S     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +   +    ++ V+
Sbjct: 172 IQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGDSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|332297980|ref|YP_004439902.1| Alanine racemase [Treponema brennaborense DSM 12168]
 gi|332181083|gb|AEE16771.1| Alanine racemase [Treponema brennaborense DSM 12168]
          Length = 390

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 169/396 (42%), Gaps = 61/396 (15%)

Query: 11  IDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L++N  ++   +    R    VK +AYG G  + A      GV    V +V EG+
Sbjct: 17  IYLDNLRHNLAAIRTCIKPETRICVPVKADAYGHGAVQTARTAQECGVSYLAVAAVSEGI 76

Query: 70  KLR----------LYTPQARIF---VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           +LR          L  PQ   F   V Y + P     +FD   I ++S    +    +L 
Sbjct: 77  ELREAGIELPILLLSVPQPEEFAEIVSYALMPA----VFDAEFIDLLSET-AVRMKRRL- 130

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHV 174
                 P  L++DTG  R+G   +EA             +L+ + +H A AD   P+   
Sbjct: 131 ------PVHLKIDTGMGRIGCPAEEAARLAERISKSAALELAGVFTHFAAADSLVPADEA 184

Query: 175 NS-VQLERFRTLISHYK------GIEASLASSSGILLGPNYHFQLTRPGISLYG------ 221
            +  Q+ERF   +   +      GI    ASS+ IL  P   F + RPGI +YG      
Sbjct: 185 YTHGQIERFVQAVDSIRDRHINPGI-VHCASSAAILQYPEAQFDMVRPGIIVYGYYPGDI 243

Query: 222 GTDKINKS-HPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
             D + ++  P+  + ++   ++I  I+   AGE +SYG       D  I V  IGYAD 
Sbjct: 244 TEDYLQRAGRPLHLKPLLEVRSKISAIKPIRAGESISYGRTWTADSDGEIGVIPIGYAD- 302

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                 G+    +P + +     + G   P+ G+I MD  M D+  +  +   D   IFG
Sbjct: 303 ------GIIRRFAPDIRIS----VNGRAYPVRGRICMDQCMIDLGKNSGVSRWDDAIIFG 352

Query: 339 PD-----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           P         +D+A A+GT +Y++L  I  R  + Y
Sbjct: 353 PKENGAACSAEDLAQATGTISYEILCGINKRVPRVY 388


>gi|308389771|gb|ADO32091.1| alanine racemase [Neisseria meningitidis alpha710]
 gi|325131163|gb|EGC53883.1| alanine racemase [Neisseria meningitidis OX99.30304]
 gi|325136699|gb|EGC59299.1| alanine racemase [Neisseria meningitidis M0579]
 gi|325201690|gb|ADY97144.1| alanine racemase [Neisseria meningitidis M01-240149]
 gi|325208574|gb|ADZ04026.1| alanine racemase [Neisseria meningitidis NZ-05/33]
          Length = 352

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 176/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+S     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGITE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|196046083|ref|ZP_03113311.1| alanine racemase [Bacillus cereus 03BB108]
 gi|225864057|ref|YP_002749435.1| alanine racemase [Bacillus cereus 03BB102]
 gi|196023138|gb|EDX61817.1| alanine racemase [Bacillus cereus 03BB108]
 gi|225790862|gb|ACO31079.1| alanine racemase [Bacillus cereus 03BB102]
          Length = 391

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    +  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 71  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG   + ++N S   +Q  +
Sbjct: 190 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|49481282|ref|YP_036225.1| alanine racemase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332838|gb|AAT63484.1| alanine racemase [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 391

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 71  EAIELREAGINVPILILGYTSVASAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 190 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEITCMLDRRIPRVY 375


>gi|289523438|ref|ZP_06440292.1| alanine racemase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503130|gb|EFD24294.1| alanine racemase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 362

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 162/371 (43%), Gaps = 26/371 (7%)

Query: 13  LTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71
           L  L++N+  + +  G   +  +VVK N YG+G   IA AL  AG Q F V + +E V L
Sbjct: 3   LENLRHNFDKIKSFVGPRVQVMSVVKANGYGMGIVPIAKALEEAGCQRFAVATPDEAVAL 62

Query: 72  RLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVD 129
           R    +  + VL G  P +    + D ++   ++ +      S++    G      +++D
Sbjct: 63  REAGIKEPLLVL-GPSPIEAAGYYVDHDVAAALTDMEFACAASRVAEEKGKVAQLHVKID 121

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           TG  R+G   +E               +  I +H A AD+P+   +  Q  RF   +   
Sbjct: 122 TGMGRIGFLPEELPHILPKLKGLSCIDIEGIFTHFATADEPNLEYSRWQFRRFMKALDIL 181

Query: 190 K--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARI 242
              GI+  L    +S+GIL  P YH    RPG+ LYG   +D   K   ++ V   +  +
Sbjct: 182 ADFGIKVRLRHVCNSAGILNLPEYHLDAVRPGLILYGMWPSDSCRKPFDLKKVFQIKTEV 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             +R    G  V YG +     +  IAV  +GY DGYP  LS           +     I
Sbjct: 242 AALRTLPLGSGVGYGLRYMTRGEEKIAVLPVGYHDGYPRVLS-----------MRASVLI 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358
           KG   PI+G I MD  M ++T    ++V D   + G     ++  +++A   GT NY++ 
Sbjct: 291 KGIRAPIVGNICMDQMMVNVTHIPDVKVKDEAVLIGAQGDEEVTTEEIAKIIGTINYEVP 350

Query: 359 VRIGTRYAKFY 369
                R  + Y
Sbjct: 351 NLFTPRVPRVY 361


>gi|222054518|ref|YP_002536880.1| alanine racemase [Geobacter sp. FRC-32]
 gi|221563807|gb|ACM19779.1| alanine racemase [Geobacter sp. FRC-32]
          Length = 351

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 159/355 (44%), Gaps = 33/355 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK +AYG G   I+  L + GV  F V  + EG++LR       I +L GI+PGQEK 
Sbjct: 10  AVVKADAYGHGFMDISLELESLGVTAFGVAFLAEGIQLRKSGIDRPILILGGIYPGQEKK 69

Query: 94  IFDTNLIPVISSVPQLTFYS----KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS 149
               N+   + S+ Q         KL      H   L+VDTG  RLG+++ EA  F    
Sbjct: 70  CVGFNISTAVFSLEQAKALDETARKLYRKAKVH---LKVDTGMGRLGVTIAEAGAFLREL 126

Query: 150 FNKKLGQLSLIISHLACADDPSSHVN---SVQLERFRTLISHYKGIEAS-----LASSSG 201
              K  +L  I SH A AD+     N   + Q E F  ++   K +  S     +A+S+ 
Sbjct: 127 RGLKNIELEGIFSHFASADELDESGNRYTAQQAEIFALVLQDAKKVGFSPTYVHIANSAA 186

Query: 202 ILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
                     L RPGI LYG   +        ++ V+  ++R+ +++       +SY  +
Sbjct: 187 AFSRDLPFCNLMRPGIVLYGALPSADFKGKIDVKPVMRLKSRVAMLKWVEQDTSISYARR 246

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
                 +L+A   +GYADGY   L+             G+  I+G    + G + MD  M
Sbjct: 247 YVSQGKTLVASVPVGYADGYDRGLTN-----------KGEALIRGQRARVAGTVCMDWIM 295

Query: 320 FDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D+T    ++VGD + + G D     I  +++A  +GT  Y++   I  R  + Y
Sbjct: 296 LDVTHIPGVQVGDEVTLLGCDGQGNCIHAEELAELAGTIPYEIFCGISKRVPRVY 350


>gi|225420488|ref|ZP_03762791.1| hypothetical protein CLOSTASPAR_06833 [Clostridium asparagiforme
           DSM 15981]
 gi|225040871|gb|EEG51117.1| hypothetical protein CLOSTASPAR_06833 [Clostridium asparagiforme
           DSM 15981]
          Length = 331

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 155/322 (48%), Gaps = 32/322 (9%)

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHP 123
           EEGV LR +     I VL   HP Q   +    + P + ++ Q    S+L +C  GV   
Sbjct: 1   EEGVILRRHGIGKMILVLGVTHPDQYGELIRYQIRPTVFTLRQAERLSEL-ACREGVRAK 59

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLE-- 180
             L VDTG +R+G+   E       S ++  G ++  + +H A AD+        QL   
Sbjct: 60  LHLAVDTGMSRIGMEPDETSAEMVLSMSRLPGIEIEGMFTHFARADERDKESARAQLAAY 119

Query: 181 -RFRTLISHYKGIEASL---ASSSGILLG-PNYHFQLTRPGISLYG--GTDKINKS--HP 231
             F  L+   +GIE  L   ++S+GI+ G P+    L R GIS+YG   +D++++   H 
Sbjct: 120 LNFSELLKS-RGIEIPLKHCSNSAGIVEGLPSNSLDLVRAGISIYGLYPSDEVDRETVH- 177

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  V+  ++RI  I+    G  VSYGG     R + IA   +GY DGYP +LS       
Sbjct: 178 LTPVMELKSRISYIKTIRPGTPVSYGGTFVARRPTRIATIPVGYGDGYPRSLSSR----- 232

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 G   I+G   PILG++ MD  M D+TD    E  D + + G D    I ++++A
Sbjct: 233 ------GSVLIRGRRAPILGRVCMDQFMVDVTDIPEAEEEDVVTLIGRDGGDQISVEELA 286

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              G  +Y+L+  +G R  + Y
Sbjct: 287 RLGGGFHYELICDLGKRVPRVY 308


>gi|300691641|ref|YP_003752636.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum PSI07]
 gi|299078701|emb|CBJ51360.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum PSI07]
          Length = 375

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 165/362 (45%), Gaps = 32/362 (8%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL NN       + ++R  AVVK NAYG G E+    L       F +  ++E V+LR  
Sbjct: 13  ALANNLQVARRHAPDSRVWAVVKANAYGHGIERAYEGLRQ--TDGFGLLDLDEAVRLRQL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTG 131
             Q  + +L G   P    ++    L   +    QL     L    +  P ++Q  ++TG
Sbjct: 71  GWQGPVLLLEGFFKPEDLALVEQYRLATTVHCEEQLRM---LELARLKGPVSVQLKINTG 127

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLERFRTLI 186
            +RLG +        + +  ++   +S I     ++H + AD P    +  QL  F    
Sbjct: 128 MSRLGFA-----PAAYRAAWERARAISGIGTIVHMTHFSDADGPRGIDH--QLAAFERAT 180

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
               G EASL++S+  L  P  H    RPG+ LYG    G     +   +   +T ++ +
Sbjct: 181 QGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGVAADIEGTGLMPAMTLKSEL 239

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I I+    G  + YG + ++ +   I V A GYADGYP    G    H+P V +GG   +
Sbjct: 240 IAIQDLPPGATIGYGSRFQVEQPMRIGVIACGYADGYPRHAPGWGGNHTP-VLVGG---V 295

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           +  MV   G+++MDM   D+       VG  + ++G  + +D+VA A+GT  Y+L+  + 
Sbjct: 296 RTRMV---GRVSMDMITVDLAGVPDARVGTPVTLWGQGLPIDEVAHAAGTVGYELMCALA 352

Query: 363 TR 364
            R
Sbjct: 353 PR 354


>gi|328884469|emb|CCA57708.1| Alanine racemase [Streptomyces venezuelae ATCC 10712]
          Length = 382

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 177/382 (46%), Gaps = 33/382 (8%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R +IDL AL+ N  ++ A ++ + R  AVVK +AYG G  + A A  +AG       +  
Sbjct: 11  RAEIDLGALRANVRTLRARVAPHVRIMAVVKADAYGHGAVRCARAALDAGADWLGTATPH 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQL--TFYSKLMSCGVSHP 123
           E + LR         + +   PG       +  L   +S +  L     +   + GV+  
Sbjct: 71  EALALRAAGITDVPVMCWLWTPGDPWDQGIEAGLDMSVSGMWALEEVVRAARATGGVAR- 129

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLE 180
             L+ DTG  R G    +  +    +   +   L +++ + SH ACAD+P     + QL+
Sbjct: 130 VQLKADTGLGRNGCQPADWPELVGEALKAEAEGLVEVTGLWSHFACADEPHHPSIAAQLD 189

Query: 181 RFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM- 232
            FR+++ + +  G+      +A+S   L  P  HF L RPGI++YG   + ++  S  + 
Sbjct: 190 VFRSMLDYAEKAGVRPEVRHIANSPATLTLPEAHFDLVRPGIAMYGVSPSPELGTSAELG 249

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V++ +A + L+++  AG  VSYG       ++ + +  +GYADG P   SG      
Sbjct: 250 LRPVMSLKASVALVKRVPAGHGVSYGHHYVTDAETTLGLVPLGYADGVPRHASGR----- 304

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   + G +  + G++ MD  + D+   +    G    +FGP    +   +D A
Sbjct: 305 ------GPVLVDGTVRTVAGRVAMDQFVVDLGGDVPAP-GTEAVLFGPGDLGEPTAEDWA 357

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
           +A+ T  Y+++ RIG R  + Y
Sbjct: 358 VAADTIAYEIVTRIGARVPRVY 379


>gi|308174216|ref|YP_003920921.1| alanine racemase [Bacillus amyloliquefaciens DSM 7]
 gi|307607080|emb|CBI43451.1| alanine racemase [Bacillus amyloliquefaciens DSM 7]
 gi|328912552|gb|AEB64148.1| alanine racemase [Bacillus amyloliquefaciens LL3]
          Length = 393

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 184/389 (47%), Gaps = 49/389 (12%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL A+K N  ++   +   ++  AVVK NAYG G  ++A     +G  +  V SVEE
Sbjct: 10  IEVDLDAIKKNIRAIRRHIPNKSKIMAVVKANAYGHGSVEVARQALESGASELAVASVEE 69

Query: 68  GVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVS 121
           G+ LR     A I VL    +   ++  +++  L     S  Q+++  K    L    VS
Sbjct: 70  GIVLRRAGITAPILVLGFTALSCVKKSAVWNITL-----SAFQVSWIKKANQILEEEAVS 124

Query: 122 HPYALQ--VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV 177
              ++   VDTG  RLG+  ++ L     +  K    LS   I +H + AD+P + +  +
Sbjct: 125 KRLSIHINVDTGMGRLGVRTEKDLLAVVKAL-KSSTYLSWDGIFTHFSTADEPDTELTML 183

Query: 178 QLERFRTLISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINK 228
           Q E+F + +   K  GI      + +++  +  P +   + R GI LYG       K   
Sbjct: 184 QHEKFISFLRFLKDQGITLPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKELD 243

Query: 229 SHPMQTVVTAEARIILIRKALAGE--LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +   ++ +ARI  + KA+  E   VSYG         +IA   IGYADGY   LS  
Sbjct: 244 LVKLTPALSLKARIAYV-KAMVTEPRTVSYGATYIAEPGEIIATIPIGYADGYSRALS-- 300

Query: 287 DSEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPD 340
                       +GFI  +G  VP+ G++TMDM M  + +S   + G+ + I+    G +
Sbjct: 301 -----------NRGFILYRGRRVPVAGRVTMDMIMVSLGESEGKQ-GEEVVIYGKQKGAE 348

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I +D++A   GT NY+++  +  R  +FY
Sbjct: 349 ISVDEIAEMLGTINYEVVSTLSRRVPRFY 377


>gi|160947043|gb|ABX54690.1| serine racemase [Enterococcus faecalis]
          Length = 366

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 167/361 (46%), Gaps = 34/361 (9%)

Query: 20  WHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75
            H++  +  N     +  AVVK NAYG+    +A  L   G+  F V +++E + LR   
Sbjct: 18  LHNVQVIKKNIPKSTKIMAVVKANAYGINAVNVAIILEYIGIDFFAVATIDEAIALRKNG 77

Query: 76  PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRL 135
             + I +L    P +   +    L   I S     F +K     + H   L+VDTG +RL
Sbjct: 78  ITSNILILGYTTPTKVDDLIHYELTQTIVSKEHAYFLNKTGKKIMCH---LKVDTGMHRL 134

Query: 136 GLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS---VQLERFRTLISHYKGI 192
           G+  +  L+     FN    ++  + SHL  ADD S         Q+ R+ T+I+  K  
Sbjct: 135 GV--EPTLEEICPIFNYPFLKIKGVYSHLGSADDLSEEGKQRTIKQISRYNTIIAELKRK 192

Query: 193 EAS-----LASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSH-PMQTVVTAEARII 243
                   L SS GIL      +   RPGI LYG     D   K H  +Q VV  +A++I
Sbjct: 193 RVDVGLTHLQSSYGILNYSELAYDYVRPGIILYGLLSNNDHNVKLHLDLQPVVAVKAQLI 252

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             +K   GE + YG   +LT    I V +IGYADG P  LS  + E+   VF       +
Sbjct: 253 SKKKIAPGEYIGYGTDTQLTSSKTIGVLSIGYADGIPRNLS--NGEYC-VVF-------E 302

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              +P +G+I MDM + D+++   I +G  + +  P+I  ++++    T   +++  +G+
Sbjct: 303 DKQIPQIGRICMDMMLVDLSNCSDIPLGVMVDVL-PNI--EEISQIQSTITNEIISCLGS 359

Query: 364 R 364
           R
Sbjct: 360 R 360


>gi|118477525|ref|YP_894676.1| alanine racemase [Bacillus thuringiensis str. Al Hakam]
 gi|228927166|ref|ZP_04090229.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229091092|ref|ZP_04222315.1| Alanine racemase [Bacillus cereus Rock3-42]
 gi|229121649|ref|ZP_04250874.1| Alanine racemase [Bacillus cereus 95/8201]
 gi|229184316|ref|ZP_04311523.1| Alanine racemase [Bacillus cereus BGSC 6E1]
 gi|254720986|ref|ZP_05182777.1| alanine racemase [Bacillus anthracis str. A1055]
 gi|300118202|ref|ZP_07055950.1| alanine racemase [Bacillus cereus SJ1]
 gi|118416750|gb|ABK85169.1| alanine racemase [Bacillus thuringiensis str. Al Hakam]
 gi|228599112|gb|EEK56725.1| Alanine racemase [Bacillus cereus BGSC 6E1]
 gi|228661869|gb|EEL17484.1| Alanine racemase [Bacillus cereus 95/8201]
 gi|228692223|gb|EEL45959.1| Alanine racemase [Bacillus cereus Rock3-42]
 gi|228832492|gb|EEM78066.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|298724513|gb|EFI65207.1| alanine racemase [Bacillus cereus SJ1]
          Length = 408

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    +  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG   + ++N S   +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|228914698|ref|ZP_04078307.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228845017|gb|EEM90059.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 408

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    +  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG   + ++N S   +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|328956604|ref|YP_004373990.1| alanine racemase [Carnobacterium sp. 17-4]
 gi|328672928|gb|AEB28974.1| alanine racemase [Carnobacterium sp. 17-4]
          Length = 390

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 165/384 (42%), Gaps = 44/384 (11%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I L  ++NN  +    LS N    AVVK + YG G ++IA     AG     V  ++E 
Sbjct: 12  EISLDNVENNIKNFKKILSSNTALMAVVKADGYGHGAKEIAETAIEAGATYLAVAFLDEA 71

Query: 69  VKLRLYTPQARIFVL-----------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           V LR       I VL             I  G    ++    + +I  +       K   
Sbjct: 72  VVLRKAGFSIPILVLGYTSLDTETIEKAIDYGLTLTVYSKEAVEIIQQLAD----QKKKV 127

Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           C +     L++D+G NR+G+ + +EAL     S       L  I +H A AD   S    
Sbjct: 128 CRIH----LKIDSGMNRIGVRTAEEALQIV-ASITSDYLLLEGIFTHFADADAIESTFVH 182

Query: 177 VQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            Q + F  + S  +  G   SL    +++  +  P  H  + R GI LYG      +   
Sbjct: 183 EQFDHFMHITSKIQEAGYTISLKHCCNTAATIAFPEMHLDMVRIGIGLYGLYPEQHLQDH 242

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  +T + + ILI+K  AG+ VSYG     T DS+IA   +GYADG+   LS     
Sbjct: 243 IELKPAMTFKTKPILIKKVPAGQSVSYGRTYTTTTDSIIATIPVGYADGFSRALSN---- 298

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   I GY  PI+G++ MD TM D+T+   +     I +FG      I + +
Sbjct: 299 -------NGNVTIDGYKAPIVGRVCMDQTMVDLTEIDPVHFDKEIVLFGDSKDSCISISE 351

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA    T +Y++   +G R  + Y
Sbjct: 352 VATQMNTIHYEVACLVGKRVPRVY 375


>gi|224477060|ref|YP_002634666.1| alanine racemase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254802386|sp|B9DMI9|ALR_STACT RecName: Full=Alanine racemase
 gi|222421667|emb|CAL28481.1| alanine racemase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 384

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 168/390 (43%), Gaps = 44/390 (11%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +++F R   LK+DL A+  N+  +  L  N     V+K NAYG+G   +   L   G + 
Sbjct: 2   ADKFYRPTYLKVDLEAILKNYQVLGKLQPNKTVMPVIKANAYGMGSVNVGHYLKKHGAEF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V +++E ++LR++    +I +L  + P          +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGIDTKILILGVVMPKDINKAIQHRVALTVPSYAWLNEAIKYLDED 121

Query: 120 VSHPYALQV--DTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPS 171
           +     L V  DTG  RLG+   E      AL  +H            + +H A AD+ S
Sbjct: 122 LEKDLWLHVKIDTGMGRLGVKSAEDYQKTVALIQSHEHL-----IFEGVFTHFAQADEDS 176

Query: 172 SHVNSVQLERFRTL---ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKI 226
            H    Q E F      I H   + A   +S+G +L       + R GISLYG   ++ +
Sbjct: 177 PHTKE-QYEIFENWVDTIPHPSYVHAQ--NSAGTILFDAPICNMVRTGISLYGYYPSEYV 233

Query: 227 NKSHPMQTVVTAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            +    +   +AE    I+ I+    G+ VSYG      +   IA+  +GYADG+P  + 
Sbjct: 234 EEQTNAELYPSAEWITEIVDIKYLNIGDTVSYGSTYTAEKSEKIAILPVGYADGFPRMMQ 293

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-----GP 339
           G + E            + G    I+G++ MD  M  + ++  I VGD + +      GP
Sbjct: 294 GTNVE------------VNGQQCTIIGRVCMDQMMIALPENEDINVGDKVTLLNREHSGP 341

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              L   A    T NY++L RIG R  + Y
Sbjct: 342 QSLLSH-AKQQQTINYEVLCRIGRRVPRIY 370


>gi|295395165|ref|ZP_06805373.1| alanine racemase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971927|gb|EFG47794.1| alanine racemase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 384

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 171/400 (42%), Gaps = 66/400 (16%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L   ID  AL +N   +   +   +  A+VK +AYG G   + PAL  AGV  F   ++ 
Sbjct: 6   LTAVIDTRALVHNVQLLQERAAGKQLVAIVKADAYGHGVNLVVPALARAGVTHFGTATIP 65

Query: 67  EGVKLR-----------------------LYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103
           E V ++                       LY P A +       P +  I         +
Sbjct: 66  EAVAVQDILAGLSDHGDDCGESDHTVMCWLYEPNADLS-----EPVERGIELGVGSPAAL 120

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLI 160
            S+     ++   + G +    L+VDTG  R GL+   LQ+ L+    +      Q+  +
Sbjct: 121 ESI-----FNAAHTTGKTARIHLKVDTGLGRNGLNSTQLQQVLEQLTTAHGV---QVCGV 172

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKG------IEASLASSSGILLGPNYHFQLTR 214
           +SH ACAD+P +  N+ Q+ERF   +   K       +   +A+S  IL          R
Sbjct: 173 MSHFACADEPDNDFNTTQIERFNQAVDTVKATLQIDNLMEHIANSPAILSMDPVPGNAVR 232

Query: 215 PGISLYGGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAV 270
            G+++YG +      H     +Q  +T  + +   +   AG+  SYG +   +  S  A+
Sbjct: 233 AGVAMYGLSPFAPVDHAYSEGLQPAMTLVSHVCAAKDVPAGQGASYGLRYTTSASSKFAL 292

Query: 271 AAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV 330
            A GY DG P   S     H   V + GK F      P++G I MD  + D+ D+  +  
Sbjct: 293 VAGGYGDGIPRQAS-----HKAHVAIQGKAF------PVVGSIAMDQMIADVGDA-QVSP 340

Query: 331 GDYIQIF---GPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           GD + I+   GP +  D+ A  +GT NYD++ R+G R  +
Sbjct: 341 GDPVVIWGNGGPHV--DEWAQWAGTINYDIVTRLGARVPR 378


>gi|288919701|ref|ZP_06414028.1| alanine racemase [Frankia sp. EUN1f]
 gi|288348890|gb|EFC83140.1| alanine racemase [Frankia sp. EUN1f]
          Length = 379

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 169/379 (44%), Gaps = 33/379 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A++++  ++   + NA T AVVK + YG G    A A  +AG        +EE + 
Sbjct: 13  IDLDAVRDSVAALVVRARNATTMAVVKADGYGHGMVPCARAALDAGAGWLGTAFLEEALS 72

Query: 71  LRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           LR     A IF      PG+     +  D +L    ++       +     G +    L+
Sbjct: 73  LRAAGINAPIFSWLAA-PGERLAAGLAADIDL-SASATWALAELAAAARQVGRAARVHLK 130

Query: 128 VDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VDTG  R G + ++  +    +     + L  +  + SH A ADDP       Q+ RF  
Sbjct: 131 VDTGLGRAGATAEDWPNLCDTAAALEGEGLLDVVGVWSHFAFADDPGHPTVQSQIGRFGD 190

Query: 185 L--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTV 235
              ++   G+      LA+S+  L+ P  HF + RPG+S+YG +       P    ++  
Sbjct: 191 AMDVARKAGLNPQIRHLANSAATLITPEAHFDMVRPGVSVYGLSPGPEVGPPSAFGLRPA 250

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A   L+++   G  VSY  +     ++ +AV  +GYADG P       + ++  V 
Sbjct: 251 MTLRATTALVKRVPEGTGVSYAHRYTTRSETNLAVIPLGYADGIPRA-----ATNTAEVL 305

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
           LGG+         I G + MD  + D+     +  GD + +FGP    +   DD A   G
Sbjct: 306 LGGR------RRRIAGTVCMDQFVVDVGVD-PVAAGDDVVLFGPGHHGEPTSDDWARVLG 358

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T NY+++ R+G R  + YT
Sbjct: 359 TINYEIVTRVGARVPRVYT 377


>gi|302344277|ref|YP_003808806.1| alanine racemase [Desulfarculus baarsii DSM 2075]
 gi|301640890|gb|ADK86212.1| alanine racemase [Desulfarculus baarsii DSM 2075]
          Length = 381

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 171/382 (44%), Gaps = 34/382 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +L IDL A+ +N  ++  +     R A  VK + YG G   +A  L  AG +   V    
Sbjct: 11  KLTIDLEAIAHNLRALRTIMPKGLRVAGTVKSDGYGHGMVAVARKLKEAGAEFLAVAHAA 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           EG  LR      +I +L G+HP +        L PV+  +  +   S + +  G+     
Sbjct: 71  EGAVLRREGLAGQILLLLGLHPSEMTQAARLRLTPVLFDLETMAALSDVATGLGLRAQCH 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L+VDTG  RLG+  ++AL+    +   +  ++  + SHLA        +   Q   F  L
Sbjct: 131 LKVDTGMGRLGVRPEDALELLRAARALRGLEVRGLTSHLATGGSADRAMADEQAAVFGQL 190

Query: 186 ISHYKG-----IEASLASSSGIL---LGPNYHFQLTRPGISLYGG--TDKINKSHPMQTV 235
           ++  +       ++SL +S G +           + R GI+LYGG     +     ++  
Sbjct: 191 LAAARAEGFDLPDSSLCNSGGAMDPPAAAPGPPHVVRLGIALYGGLPDPAMAGRLDLRGA 250

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   +++I +R A  G+ VSYG   +   D+ + V  +GY DGYP   S           
Sbjct: 251 MGLASQLIAVRPARRGQPVSYGCTWRADCDTWLGVVPLGYGDGYPRAAS----------- 299

Query: 296 LGGKGF--IKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFG----PDIKLDDVA 347
               GF  + G   PI+G++ M++T+ D+   D L  +VGD +   G     +I  D++A
Sbjct: 300 --NNGFMLVHGQRAPIVGRVCMNLTVLDLGGFDPLP-QVGDEVVALGGQGADEITCDELA 356

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y+++ R+G    + +
Sbjct: 357 SWCQTISYEIVCRLGAANPRIH 378


>gi|218768673|ref|YP_002343185.1| alanine racemase [Neisseria meningitidis Z2491]
 gi|20137238|sp|Q9JTA6|ALR_NEIMA RecName: Full=Alanine racemase
 gi|121052681|emb|CAM09022.1| alanine racemase [Neisseria meningitidis Z2491]
 gi|319410904|emb|CBY91298.1| alanine racemase [Neisseria meningitidis WUE 2594]
          Length = 352

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 176/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+S     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASVYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|145596368|ref|YP_001160665.1| alanine racemase [Salinispora tropica CNB-440]
 gi|189027392|sp|A4XBI0|ALR_SALTO RecName: Full=Alanine racemase
 gi|145305705|gb|ABP56287.1| alanine racemase [Salinispora tropica CNB-440]
          Length = 372

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 172/378 (45%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A++ N   + + S  A   AVVK + YG G    A A  + G     V +++E 
Sbjct: 6   VRVDLDAIRENVSWLRSGSA-AELMAVVKGDGYGHGMVPAAHAALDGGADWLGVCTLDEA 64

Query: 69  VKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPY 124
           + LR   +  P     +  G+ P  E +    +L   ++SV QL          G     
Sbjct: 65  LTLRRAGITVPVLAWLLAPGL-PLHEGVTAGIDL--GVASVAQLEEMVEAGRVAGRPARL 121

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L++DTG +R G ++ E    LD    +      ++  + SH   AD P       QL  
Sbjct: 122 HLKIDTGLSRGGATISEWPELLDAAAKAQADGAVEVVGVWSHFVYADAPGHPTTDRQLAV 181

Query: 182 FRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F   +   +  G+      LA+S+  L  P+ HF L RPG+++YG +    +   ++  +
Sbjct: 182 FHEGLGMVEKAGLRPRYRHLANSAATLTRPDAHFDLVRPGLAVYGLSPVAGERFGLRPAM 241

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           TA AR++L ++  AG  VSYG      R S +AV  +GYADG P      D+ +S  V L
Sbjct: 242 TARARVMLTKQVPAGAGVSYGHTYTTDRASNLAVIPLGYADGVP-----RDASNSGPVQL 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
           G      G    I G++ MD  + D  D   +  GD   +FG     +   DD A A GT
Sbjct: 297 G------GVRRTISGRVCMDQFVLDCGDD-PVAPGDVATLFGTGRDGEPTADDWAEAVGT 349

Query: 353 TNYDLLVRIG-TRYAKFY 369
            NY+++ R G TR  + Y
Sbjct: 350 INYEIVTRFGSTRVPRCY 367


>gi|317507715|ref|ZP_07965420.1| alanine racemase [Segniliparus rugosus ATCC BAA-974]
 gi|316253968|gb|EFV13333.1| alanine racemase [Segniliparus rugosus ATCC BAA-974]
          Length = 386

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 177/389 (45%), Gaps = 36/389 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M S   ++  +D +AL +N   +   S  A+  AV+K NAYG G   +A  +  AG    
Sbjct: 1   MVSAPAVQATVDHSALAHNVRLLIQASAPAKVIAVLKANAYGHGAVPVARTVLAAGAAQI 60

Query: 61  FVTSVEEGVKLRLYTPQARIFV-LYGIHPGQEKIIFDTNL-----IPVISSVPQLTFYSK 114
            V +++E  +LR    +A I   L+   P +   +F   +     + V +S         
Sbjct: 61  GVATLDEAFELRAGGIEAPIIAWLHAFDPSEAVAVFAEAVALGIELGVSTSTQLRAVAEA 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPS 171
            M        A++VDTG NR G + ++   A     N+      ++  + SHLA AD P 
Sbjct: 121 AMRADEPAVVAVKVDTGLNRGGFAREDWRKAFADLANAEAAGAVRVRAVFSHLANADRPE 180

Query: 172 SHVNSVQLERFRTLISHYKGIEAS-----LASSSGILLGPNY------HFQLTRPGISLY 220
              N+ Q    R  ++  +    S     LA+S  +L  P         F  TRPG+++Y
Sbjct: 181 YRTNAEQASGLRDAVALARKAGLSPQLVHLANSPAVLTRPRALVDGVPAFNATRPGVAVY 240

Query: 221 GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           G +    +   +   +T  AR+ L+++  AG+ VSYG       D+ +A+  IGYADG P
Sbjct: 241 GLSPIAGRDFGLIPAMTLTARVGLVKRIQAGDGVSYGHDFVAPTDTTLALLPIGYADGLP 300

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP 339
            +L+G        V +GG+ +      P +G++ MD  + D+      +  GD   +FG 
Sbjct: 301 RSLAG-----KFEVVIGGRRY------PGVGRVCMDQVLVDLGPGRPRVREGDIATLFGS 349

Query: 340 ----DIKLDDVALASGTTNYDLLVRIGTR 364
               +  +DD A A+GT NY+++ +I  R
Sbjct: 350 GKDGEQTVDDWAKAAGTINYEIVTQIRGR 378


>gi|196036671|ref|ZP_03104064.1| alanine racemase [Bacillus cereus W]
 gi|195990740|gb|EDX54715.1| alanine racemase [Bacillus cereus W]
          Length = 391

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 71  EAIELREAGINVPILILGYTSVAATEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG   + ++N S   +Q  +
Sbjct: 190 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|257431477|ref|ZP_05607850.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus 68-397]
 gi|257277718|gb|EEV08388.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus 68-397]
          Length = 382

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 179/390 (45%), Gaps = 46/390 (11%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++        +   + S   L    K +S 
Sbjct: 62  FAVATLDEAIELRMHGITAKILVL-GVLPAKDSDKAIQHRVALTVPSKQWLKEAIKNISG 120

Query: 119 GVSHPYALQV--DTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDP 170
                  L +  DTG  RLG+    + QE ++       ++  QL    + +H ACAD+P
Sbjct: 121 EQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFACADEP 175

Query: 171 SSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG-----GTD 224
              + + Q  RF+ +++     E     +S+G LL         RPGISLYG        
Sbjct: 176 GD-MTTEQYHRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQ 234

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
           +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + 
Sbjct: 235 QKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQ 293

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-----GP 339
           G         F+     + G+   ++G++ MD T+  + D   ++ GD + +       P
Sbjct: 294 G--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESP 339

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              ++  A    T NY++L  +  R  + Y
Sbjct: 340 Q-SVEVAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|49484296|ref|YP_041520.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257426208|ref|ZP_05602623.1| alanine racemase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428867|ref|ZP_05605261.1| alanine racemase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257434187|ref|ZP_05610537.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus E1410]
 gi|257437100|ref|ZP_05613140.1| alanine racemase [Staphylococcus aureus subsp. aureus M876]
 gi|258422928|ref|ZP_05685828.1| alanine racemase [Staphylococcus aureus A9635]
 gi|282904737|ref|ZP_06312611.1| alanine racemase [Staphylococcus aureus subsp. aureus C160]
 gi|282906415|ref|ZP_06314266.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909383|ref|ZP_06317198.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911637|ref|ZP_06319436.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914916|ref|ZP_06322696.1| alanine racemase [Staphylococcus aureus subsp. aureus M899]
 gi|282920247|ref|ZP_06327971.1| alanine racemase [Staphylococcus aureus subsp. aureus C427]
 gi|282925459|ref|ZP_06333113.1| alanine racemase [Staphylococcus aureus subsp. aureus C101]
 gi|283958850|ref|ZP_06376295.1| alanine racemase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293508989|ref|ZP_06667776.1| alanine racemase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510901|ref|ZP_06669600.1| alanine racemase [Staphylococcus aureus subsp. aureus M809]
 gi|293547502|ref|ZP_06672177.1| alanine racemase [Staphylococcus aureus subsp. aureus M1015]
 gi|295428657|ref|ZP_06821283.1| alanine racemase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|60389625|sp|Q6GF03|ALR1_STAAR RecName: Full=Alanine racemase 1
 gi|49242425|emb|CAG41139.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257270913|gb|EEV03086.1| alanine racemase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274209|gb|EEV05726.1| alanine racemase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280826|gb|EEV10971.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus E1410]
 gi|257283493|gb|EEV13620.1| alanine racemase [Staphylococcus aureus subsp. aureus M876]
 gi|257846952|gb|EEV70966.1| alanine racemase [Staphylococcus aureus A9635]
 gi|282312860|gb|EFB43261.1| alanine racemase [Staphylococcus aureus subsp. aureus C101]
 gi|282316107|gb|EFB46488.1| alanine racemase [Staphylococcus aureus subsp. aureus C427]
 gi|282321119|gb|EFB51450.1| alanine racemase [Staphylococcus aureus subsp. aureus M899]
 gi|282324402|gb|EFB54715.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326653|gb|EFB56951.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330365|gb|EFB59883.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594770|gb|EFB99747.1| alanine racemase [Staphylococcus aureus subsp. aureus C160]
 gi|283789568|gb|EFC28391.1| alanine racemase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919622|gb|EFD96695.1| alanine racemase [Staphylococcus aureus subsp. aureus M1015]
 gi|291094693|gb|EFE24965.1| alanine racemase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466186|gb|EFF08713.1| alanine racemase [Staphylococcus aureus subsp. aureus M809]
 gi|295127327|gb|EFG56967.1| alanine racemase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|315193230|gb|EFU23628.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 382

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 185/394 (46%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 62  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 116

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 117 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 171

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q  RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 172 ADEPGD-MTTEQYHRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 230

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 231 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 289

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 290 RIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 335

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++  A    T NY++L  +  R  + Y
Sbjct: 336 RESPQ-SVEVAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|20137245|sp|Q9RER4|ALR_AQUPY RecName: Full=Alanine racemase
 gi|6665784|gb|AAF23014.1|AF212103_1 alanine racemase [Aquifex pyrophilus]
          Length = 341

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 173/358 (48%), Gaps = 43/358 (12%)

Query: 18  NNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEEGVKLRLYTP 76
           +N   ++  SG  R  AVVK NAYG+G  +++  L     V  F V   +EGV+LR    
Sbjct: 15  HNVKEIHRFSGK-RIIAVVKANAYGIGVREVSRILEGLEEVDAFAVACTQEGVELRECGI 73

Query: 77  QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLG 136
           + +I +L GI     K++ + +L PVIS    L           +  + ++ DTG  RLG
Sbjct: 74  KKKILILGGILEEDVKLLEEYDLTPVISDPEHLKVLKDR-----NIKFHVKYDTGMGRLG 128

Query: 137 LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE-AS 195
                   FT+     K  ++  ++SH +   D   + + +Q++RF  ++ +Y+ ++   
Sbjct: 129 --------FTNEII--KDPRVEGVMSHFSSPAD--RNFSKLQIKRFEEILKNYEKVKYIH 176

Query: 196 LASSSGILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQT--VVTAEARIILIRKALA 250
           L SS+G++    Y    T   R G+++YG  +K  K +P++    +   AR+I +++   
Sbjct: 177 LESSAGLI----YRVPFTTHVRVGLAIYG--EKPLKDYPLEVKPALRLRARLISVKELPE 230

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
              VSYG      R + + V A GYADG   TLS      S  +F G K       VPI+
Sbjct: 231 NYPVSYGRTYITKRKTKLGVVAFGYADGLMKTLSN----RSFLIFEGRK-------VPII 279

Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
           G ITMDMTM D++ +     GD++ I   +     +A  +GT  Y+++  +  R  + 
Sbjct: 280 GNITMDMTMVDLSGT-EARTGDWVYIVNEERSFTPLARDAGTIPYEIMCNLSRRVERL 336


>gi|188995058|ref|YP_001929310.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594738|dbj|BAG33713.1| alanine racemase [Porphyromonas gingivalis ATCC 33277]
          Length = 823

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 181/381 (47%), Gaps = 45/381 (11%)

Query: 9   LKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L+A+ +N +   N +    +T  +VK   YG+G  ++   L    V    V   +E
Sbjct: 465 LRINLSAIIHNLNFYRNLVPSGTKTICMVKAQGYGVGSYELVKTLQEHRVDYIAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           G +LR       I V+   +P +   + + D  L P I S   L  +S+ +     V +P
Sbjct: 525 GKELRERGISMPIVVM---NPQRNAFQTLIDYGLEPEIYSFALLASFSETVVRNGLVGYP 581

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERF 182
             +++DTG +RLG  L   +        K  G  +  + +HLA ADDP        L+ F
Sbjct: 582 VHIKIDTGMHRLGF-LPSDMTRLGEILAKDAGLSIRSVFTHLAGADDPD-------LDDF 633

Query: 183 -RTLISHYKGIEASLAS------------SSGILLGPNYHFQLTRPGISLYGGTDK-INK 228
            R+ +  +    ASL+S            ++G+    +YH  + R GI LYG T   +  
Sbjct: 634 TRSQLLSFDAAFASLSSLLGYIPLRHVLNTAGVERFADYHADMIRLGIGLYGVTASGVQG 693

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             P+ T++T    I+ I+   + + V YG + ++ + S IA+  IGYAD       GLD 
Sbjct: 694 LRPVATLMTT---ILQIKDISSSDTVGYGRKGRVQQPSRIAIIPIGYAD-------GLDR 743

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
             S  V   G+  ++G+  PI+G + MD+ M D+T  +  E GD + +FG ++ +++VA 
Sbjct: 744 RLSCGV---GEVLVRGHRCPIVGNVCMDICMIDVT-GMPAEEGDPVVVFGEELPIEEVAH 799

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y++L  I  R  + Y
Sbjct: 800 KMNTIPYEVLTGISPRVRRVY 820


>gi|34540830|ref|NP_905309.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis W83]
 gi|34397144|gb|AAQ66208.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           gingivalis W83]
          Length = 823

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 181/381 (47%), Gaps = 45/381 (11%)

Query: 9   LKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L+A+ +N +   N +    +T  +VK   YG+G  ++   L    V    V   +E
Sbjct: 465 LRINLSAIIHNLNFYRNLVPSGTKTICMVKAQGYGVGSYELVKTLQEHRVDYIAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           G +LR       I V+   +P +   + + D  L P I S   L  +S+ +     V +P
Sbjct: 525 GKELRERGIGMPIVVM---NPQRNAFQTLIDYGLEPEIYSFALLASFSETVVRNGLVGYP 581

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERF 182
             +++DTG +RLG  L   +        K  G  +  + +HLA ADDP        L+ F
Sbjct: 582 VHIKIDTGMHRLGF-LPSDMTRLGEILAKDAGLSIRSVFTHLAGADDPD-------LDDF 633

Query: 183 -RTLISHYKGIEASLAS------------SSGILLGPNYHFQLTRPGISLYGGTDK-INK 228
            R+ +  +    ASL+S            ++G+    +YH  + R GI LYG T   +  
Sbjct: 634 TRSQLLSFDAAFASLSSLLGYIPLRHVLNTAGVERFADYHADMIRLGIGLYGVTASGVQG 693

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             P+ T++T    I+ I+   + + V YG + ++ + S IA+  IGYAD       GLD 
Sbjct: 694 LRPVATLMTT---ILQIKDISSSDTVGYGRKGRVQQPSRIAIIPIGYAD-------GLDR 743

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
             S  V   G+  ++G+  PI+G + MD+ M D+T  +  E GD + +FG ++ +++VA 
Sbjct: 744 RLSCGV---GEVLVRGHRCPIVGNVCMDICMIDVT-GMPAEEGDPVVVFGEELPIEEVAR 799

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y++L  I  R  + Y
Sbjct: 800 KMNTIPYEVLTGISPRVRRVY 820


>gi|328554160|gb|AEB24652.1| alanine racemase [Bacillus amyloliquefaciens TA208]
          Length = 393

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 184/389 (47%), Gaps = 49/389 (12%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL A+K N  ++   +   ++  AVVK NAYG G  ++A     +G  +  V SVEE
Sbjct: 10  IEVDLDAIKKNIRAIRRHIPNKSKIMAVVKANAYGHGSVEVARQALESGASELAVASVEE 69

Query: 68  GVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVS 121
           G+ LR     A I VL    +   ++  +++  L     S  Q+++  K    L    VS
Sbjct: 70  GIVLRRAGITAPILVLDFTALSCVKKSAVWNITL-----SAFQVSWIKKANQILEEEAVS 124

Query: 122 HPYALQ--VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV 177
              ++   VDTG  RLG+  ++ L     +  K    LS   I +H + AD+P + +  +
Sbjct: 125 KRLSIHINVDTGMGRLGVRTEKDLLAVVKAL-KSSTYLSWDGIFTHFSTADEPDTELTML 183

Query: 178 QLERFRTLISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINK 228
           Q E+F + +   K  GI      + +++  +  P +   + R GI LYG       K   
Sbjct: 184 QHEKFISFLRFLKDQGITLPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKELD 243

Query: 229 SHPMQTVVTAEARIILIRKALAGE--LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +   ++ +ARI  + KA+  E   VSYG         +IA   IGYADGY   LS  
Sbjct: 244 LVKLTPALSLKARIAYV-KAMVTEPRTVSYGATYIAEPGEIIATIPIGYADGYSRALS-- 300

Query: 287 DSEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPD 340
                       +GFI  +G  VP+ G++TMDM M  + +S   + G+ + I+    G +
Sbjct: 301 -----------NRGFILYRGRRVPVAGRVTMDMIMVSLGESEGKQ-GEEVVIYGKQKGAE 348

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I +D++A   GT NY+++  +  R  +FY
Sbjct: 349 ISVDEIAEMLGTINYEVVSTLSRRVPRFY 377


>gi|303229989|ref|ZP_07316763.1| alanine racemase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515355|gb|EFL57323.1| alanine racemase [Veillonella atypica ACS-134-V-Col7a]
          Length = 370

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 169/378 (44%), Gaps = 31/378 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L ID + ++ N   + ++L   + + AV+K N YG G   +       G +   V   EE
Sbjct: 6   LTIDTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVAIPEE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--- 124
            V LR       I++L    P   +++ DTN IP +     L   +K+     +H     
Sbjct: 66  SVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALNKVAD---NHDMIIR 122

Query: 125 -ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            A+ VDTG +R+G+  ++A++F     +     +    SH++ AD         Q ++F 
Sbjct: 123 VAVAVDTGMHRIGIKPEDAVEFIKRVESYPNLAVDGFFSHMSNADAADQSHAHGQAQKFH 182

Query: 184 TLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTV 235
           T++   +          SLA+S+G+L   +  F   RPGI  YG    ++  +   ++ V
Sbjct: 183 TMVDEIRAFRPDADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKPV 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + ++ ++   AGE + YG          IA   +GYADGYP +LS           
Sbjct: 243 LSLHSEVVHVQHLEAGEGIGYGSTYITPEPMTIATIPVGYADGYPRSLSNR--------- 293

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
             G   I+G   P++G+I MD  M  + D+++++ GD + + G      I   ++A  + 
Sbjct: 294 --GTVLIQGTRCPVVGRICMDQFMVAVPDTITVKPGDKVVLLGSQGHESISALEIAALAS 351

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++      R  + Y
Sbjct: 352 TIPYEIFCGFSDRVPRQY 369


>gi|297589866|ref|ZP_06948506.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8]
 gi|297576994|gb|EFH95708.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437516|gb|ADQ76587.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 390

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 185/394 (46%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 10  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 70  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 124

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 125 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 179

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q  RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 180 ADEPGD-MTTEQYHRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 238

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 239 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 297

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 298 RIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 343

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++  A    T NY++L  +  R  + Y
Sbjct: 344 RESPQ-SVEVAAEKQHTINYEVLCNLSRRLPRIY 376


>gi|283771238|ref|ZP_06344127.1| alanine racemase [Staphylococcus aureus subsp. aureus H19]
 gi|283459443|gb|EFC06536.1| alanine racemase [Staphylococcus aureus subsp. aureus H19]
          Length = 382

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 187/395 (47%), Gaps = 56/395 (14%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 62  FAVATLDEAIELRMHGITAKILVL-GVLPVKD---IDKAIQHRVALTVPSKQWLKEAIK- 116

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 117 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 171

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q +RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 172 ADEPGD-MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 230

Query: 222 --GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
                KI K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY
Sbjct: 231 EYVQQKI-KVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGY 288

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-- 337
              + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +   
Sbjct: 289 LRIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDN 334

Query: 338 ---GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
               P   ++  A    T NY++L  +  R  + Y
Sbjct: 335 HRESPQ-SVEVAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|124516677|gb|EAY58185.1| Alanine racemase [Leptospirillum rubarum]
          Length = 406

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 170/390 (43%), Gaps = 42/390 (10%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL +DL AL NN   + + L  +     VVK +AYG G   +A      GV    V  +E
Sbjct: 22  RLIVDLDALSNNLEWIRSRLPSSIEILPVVKADAYGHGMLPVAKNFVEKGVPALGVMGLE 81

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV+LR     A++ V+ GI P + +      L PVI +   L     L      H + L
Sbjct: 82  EGVRLRKAEISAKVIVMGGILPSELEECIAFGLTPVIHNCELLEAALDLSRKMEVHIH-L 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + D G  RLG  L E + +  +   ++   ++  ++SH    +  +    S Q+  F  +
Sbjct: 141 KFDVGMGRLGF-LPEDISWVCDKIGRESSLRIEGVMSHFPEGEKIAE--TSRQIGIFGCM 197

Query: 186 ISHY--------KGIEASLASSSGILLG------------PNYHFQLTRPGISLYGGTDK 225
           +           +     LA+S+  L G              Y     RPGI LYG    
Sbjct: 198 VDELWDRGALCDRPFVIHLANSAAFLSGQYSVADKKNRAWEKYARYWIRPGILLYGIPVD 257

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 ++  +  +AR+I ++    G  +SYGG   L+R + + V  +GYADG P  LS 
Sbjct: 258 PLPLPGLKPAMEIQARLISLKTLSEGSRISYGGTLSLSRKTRVGVLGMGYADGLPRELSN 317

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFG----PD 340
                       G     G   P LG++ MDM M D+TD+ S + +GD++ + G      
Sbjct: 318 W-----------GWASRMGQKFPFLGRVCMDMVMVDVTDAESPVCLGDWMTVLGNGEDSS 366

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +   ++A    +  Y+++ R+G R  +FY+
Sbjct: 367 MSAWEIAGRIRSIPYEIVCRMGNRSPRFYS 396


>gi|301053620|ref|YP_003791831.1| alanine racemase [Bacillus anthracis CI]
 gi|300375789|gb|ADK04693.1| alanine racemase [Bacillus cereus biovar anthracis str. CI]
          Length = 408

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|228945715|ref|ZP_04108062.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228813936|gb|EEM60210.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 408

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVAATEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG   + ++N S   +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|52143353|ref|YP_083477.1| alanine racemase [Bacillus cereus E33L]
 gi|51976822|gb|AAU18372.1| alanine racemase [Bacillus cereus E33L]
          Length = 391

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 169/378 (44%), Gaps = 30/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHP 123
           E ++LR       I +L    +   +E I +D  +    S   Q +   +K +       
Sbjct: 71  EAIELREAGINVPILILGYTSVAVAEEAIQYDVMMTVYRSEDLQGINEIAKRLQKKAQ-- 128

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F 
Sbjct: 129 IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFE 188

Query: 184 TLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTV 235
             ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  
Sbjct: 189 KAVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPA 248

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++++  I+ A     VSYG     T +  IA   IGYADGY   LS           
Sbjct: 249 LSLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN---------- 298

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
             G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   G
Sbjct: 299 -KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLG 357

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   +  R  + Y
Sbjct: 358 TINYEVTCMLDRRIPRVY 375


>gi|73662116|ref|YP_300897.1| alanine racemase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|123643046|sp|Q49Z24|ALR_STAS1 RecName: Full=Alanine racemase
 gi|72494631|dbj|BAE17952.1| alanine racemase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 382

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 169/386 (43%), Gaps = 38/386 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+  N+     L  N     VVK N YGLG  K+A  L + G + 
Sbjct: 2   SDKYYRSTYVNVDLNAIVANFQVFQKLHPNKTVMPVVKANGYGLGSIKVARQLMDNGAEF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMS 117
           F V +++E ++LR++   A+I VL G+ P +   K I     I V S    +    ++  
Sbjct: 62  FAVATLDEAIELRMHGIDAKILVL-GVIPTEHINKAIQHRVAITVPSKSWLVEAVKEIPE 120

Query: 118 CGVSHPYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACADDPSS 172
                 +  +++DTG  RLG+   E         N   G   LI     +H ACAD+P  
Sbjct: 121 SNEKDLWIHVKLDTGMGRLGMKTAEEYKEVIELIN---GHSHLIFEGVFTHFACADEPGD 177

Query: 173 HVNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKIN 227
            +N  Q   F  ++    K       +S+G L+         R GISLYG       K N
Sbjct: 178 SMNR-QQTMFEEIVGQADKPDYIHSQNSAGALMKDTQFCNAVRVGISLYGYYPSAYVKSN 236

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++      + I+  +   AGE VSYG        + I V  +GYADGYP  + G  
Sbjct: 237 VKVHLKPSAQWISEIVQTKLLHAGESVSYGSVYTADEKTKIGVIPVGYADGYPRMMKGF- 295

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLDD 345
                SV + GK         ++GK+ MD T+  I D   I+VGD + I     D     
Sbjct: 296 -----SVNVNGK------QCEVIGKVCMDQTIIKIPD--EIQVGDKVIIMDHHSDTPQSA 342

Query: 346 VALA--SGTTNYDLLVRIGTRYAKFY 369
            ALA    T NY++L R+  R  + Y
Sbjct: 343 EALAHQQQTINYEVLCRLSRRLPRVY 368


>gi|269120416|ref|YP_003308593.1| alanine racemase [Sebaldella termitidis ATCC 33386]
 gi|268614294|gb|ACZ08662.1| alanine racemase [Sebaldella termitidis ATCC 33386]
          Length = 367

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 159/335 (47%), Gaps = 27/335 (8%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL-YGIHPGQEK 92
            VVKD+AYGLG E I P LYN G + + V   EE  ++R       I +L Y       +
Sbjct: 27  CVVKDDAYGLGIENILPVLYNEGERYYAVAFFEEASEIRKMYEDVNIIILNYTEEEKLHE 86

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            + D   + V S + QL  Y +++   +      ++ +TG NRLG  ++E  +       
Sbjct: 87  AVKDKIEVSVFSML-QLHRYIEILGDKIPELGIHIKFNTGMNRLGFDIEETPELCRIISE 145

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL------ASSSGILLG 205
             L Q+  + SH++ +++  +     QLE+F  + +  K  E +       AS +     
Sbjct: 146 NNL-QVKSVFSHISNSENIEN--TEKQLEKFENITNLLKKHEINYGFRHISASPALFQYT 202

Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
             Y+F  +R G+++Y G + ++K   ++  ++ E++II I+    GE +SYG   +L +D
Sbjct: 203 GKYNFDFSRVGMAIY-GLEPLSKDTGLEKCISIESKIINIKNVKKGEYISYGENNRLEKD 261

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
           + + +  +GYA G  + +             G    I G   P++G++ MDM + DI+  
Sbjct: 262 TAVGIIPMGYAQGIQMQIEN----------KGAYALINGKKAPVIGEVCMDMLLLDISGI 311

Query: 326 LSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
            ++ + D + + G     +I L D++  + T   D
Sbjct: 312 ENVNLLDSVVLLGKSGNEEITLRDISKWTSTIQDD 346


>gi|53719788|ref|YP_108774.1| alanine racemase [Burkholderia pseudomallei K96243]
 gi|53723911|ref|YP_103215.1| alanine racemase [Burkholderia mallei ATCC 23344]
 gi|67639484|ref|ZP_00438337.1| alanine racemase [Burkholderia mallei GB8 horse 4]
 gi|76809305|ref|YP_333995.1| alanine racemase [Burkholderia pseudomallei 1710b]
 gi|121600921|ref|YP_993394.1| alanine racemase [Burkholderia mallei SAVP1]
 gi|124383506|ref|YP_001029170.1| alanine racemase [Burkholderia mallei NCTC 10229]
 gi|126441754|ref|YP_001059490.1| alanine racemase [Burkholderia pseudomallei 668]
 gi|126450850|ref|YP_001080901.1| alanine racemase [Burkholderia mallei NCTC 10247]
 gi|126454140|ref|YP_001066773.1| alanine racemase [Burkholderia pseudomallei 1106a]
 gi|134277700|ref|ZP_01764415.1| alanine racemase [Burkholderia pseudomallei 305]
 gi|166999682|ref|ZP_02265517.1| alanine racemase [Burkholderia mallei PRL-20]
 gi|167720193|ref|ZP_02403429.1| alanine racemase [Burkholderia pseudomallei DM98]
 gi|167739195|ref|ZP_02411969.1| alanine racemase [Burkholderia pseudomallei 14]
 gi|167816406|ref|ZP_02448086.1| alanine racemase [Burkholderia pseudomallei 91]
 gi|167846316|ref|ZP_02471824.1| alanine racemase [Burkholderia pseudomallei B7210]
 gi|167894898|ref|ZP_02482300.1| alanine racemase [Burkholderia pseudomallei 7894]
 gi|167903285|ref|ZP_02490490.1| alanine racemase [Burkholderia pseudomallei NCTC 13177]
 gi|167911526|ref|ZP_02498617.1| alanine racemase [Burkholderia pseudomallei 112]
 gi|167919536|ref|ZP_02506627.1| alanine racemase [Burkholderia pseudomallei BCC215]
 gi|217421882|ref|ZP_03453386.1| alanine racemase [Burkholderia pseudomallei 576]
 gi|237812829|ref|YP_002897280.1| alanine racemase [Burkholderia pseudomallei MSHR346]
 gi|242314484|ref|ZP_04813500.1| alanine racemase [Burkholderia pseudomallei 1106b]
 gi|254177500|ref|ZP_04884155.1| alanine racemase [Burkholderia mallei ATCC 10399]
 gi|254179300|ref|ZP_04885899.1| alanine racemase [Burkholderia pseudomallei 1655]
 gi|254189313|ref|ZP_04895824.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237]
 gi|254197584|ref|ZP_04904006.1| alanine racemase [Burkholderia pseudomallei S13]
 gi|254200168|ref|ZP_04906534.1| alanine racemase [Burkholderia mallei FMH]
 gi|254206506|ref|ZP_04912858.1| alanine racemase [Burkholderia mallei JHU]
 gi|254261307|ref|ZP_04952361.1| alanine racemase [Burkholderia pseudomallei 1710a]
 gi|254297188|ref|ZP_04964641.1| alanine racemase [Burkholderia pseudomallei 406e]
 gi|254358084|ref|ZP_04974357.1| alanine racemase [Burkholderia mallei 2002721280]
 gi|81823990|sp|Q62JA4|ALR_BURMA RecName: Full=Alanine racemase
 gi|166919548|sp|A3MKW5|ALR_BURM7 RecName: Full=Alanine racemase
 gi|166919549|sp|A2SB51|ALR_BURM9 RecName: Full=Alanine racemase
 gi|166919550|sp|A1V591|ALR_BURMS RecName: Full=Alanine racemase
 gi|52210202|emb|CAH36181.1| alanine racemase, catabolic [Burkholderia pseudomallei K96243]
 gi|52427334|gb|AAU47927.1| alanine racemase [Burkholderia mallei ATCC 23344]
 gi|76578758|gb|ABA48233.1| alanine racemase [Burkholderia pseudomallei 1710b]
 gi|121229731|gb|ABM52249.1| alanine racemase [Burkholderia mallei SAVP1]
 gi|124291526|gb|ABN00795.1| alanine racemase [Burkholderia mallei NCTC 10229]
 gi|126221247|gb|ABN84753.1| alanine racemase [Burkholderia pseudomallei 668]
 gi|126227782|gb|ABN91322.1| alanine racemase [Burkholderia pseudomallei 1106a]
 gi|126243720|gb|ABO06813.1| alanine racemase [Burkholderia mallei NCTC 10247]
 gi|134251350|gb|EBA51429.1| alanine racemase [Burkholderia pseudomallei 305]
 gi|147749764|gb|EDK56838.1| alanine racemase [Burkholderia mallei FMH]
 gi|147753949|gb|EDK61014.1| alanine racemase [Burkholderia mallei JHU]
 gi|148027211|gb|EDK85232.1| alanine racemase [Burkholderia mallei 2002721280]
 gi|157807101|gb|EDO84271.1| alanine racemase [Burkholderia pseudomallei 406e]
 gi|157936992|gb|EDO92662.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698539|gb|EDP88509.1| alanine racemase [Burkholderia mallei ATCC 10399]
 gi|169654325|gb|EDS87018.1| alanine racemase [Burkholderia pseudomallei S13]
 gi|184209840|gb|EDU06883.1| alanine racemase [Burkholderia pseudomallei 1655]
 gi|217395624|gb|EEC35642.1| alanine racemase [Burkholderia pseudomallei 576]
 gi|237506222|gb|ACQ98540.1| alanine racemase [Burkholderia pseudomallei MSHR346]
 gi|238520031|gb|EEP83495.1| alanine racemase [Burkholderia mallei GB8 horse 4]
 gi|242137723|gb|EES24125.1| alanine racemase [Burkholderia pseudomallei 1106b]
 gi|243064332|gb|EES46518.1| alanine racemase [Burkholderia mallei PRL-20]
 gi|254219996|gb|EET09380.1| alanine racemase [Burkholderia pseudomallei 1710a]
          Length = 356

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 165/364 (45%), Gaps = 32/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +  ++  A+VK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD           E+  T  
Sbjct: 124 MNSGMNRLGYTPEKYRAAWERARACPGIGQITLM-THFSDADGERGVA-----EQMATFE 177

Query: 187 SHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEA 240
              +GI    S A+S+ +L  P+ HF   RPGI LYG +     +      ++  +T  +
Sbjct: 178 RGAQGIAGARSFANSAAVLWHPSAHFDWVRPGIMLYGASPSGRAADIADRGLKPTMTLAS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I ++    G+ V YG          I V A GYADGYP     +  E +P V      
Sbjct: 238 ELIAVQTLAKGQAVGYGSMFVAEDTMRIGVVACGYADGYPR----IAPEGTPVV------ 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA    T  Y+L+  
Sbjct: 288 -VDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMCA 346

Query: 361 IGTR 364
           +  R
Sbjct: 347 VAPR 350


>gi|239999360|ref|ZP_04719284.1| Alr [Neisseria gonorrhoeae 35/02]
 gi|317164616|gb|ADV08157.1| hypothetical protein NGTW08_1189 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 352

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 176/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+S     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGNDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|196039765|ref|ZP_03107069.1| alanine racemase [Bacillus cereus NVH0597-99]
 gi|196029468|gb|EDX68071.1| alanine racemase [Bacillus cereus NVH0597-99]
          Length = 391

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 71  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 190 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|108798118|ref|YP_638315.1| alanine racemase [Mycobacterium sp. MCS]
 gi|119867214|ref|YP_937166.1| alanine racemase [Mycobacterium sp. KMS]
 gi|126433776|ref|YP_001069467.1| alanine racemase [Mycobacterium sp. JLS]
 gi|108768537|gb|ABG07259.1| alanine racemase [Mycobacterium sp. MCS]
 gi|119693303|gb|ABL90376.1| alanine racemase [Mycobacterium sp. KMS]
 gi|126233576|gb|ABN96976.1| alanine racemase [Mycobacterium sp. JLS]
          Length = 383

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 173/378 (45%), Gaps = 34/378 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N   +   +G+A+   V+K + YG G  ++A  + +AGV +  V +V E + 
Sbjct: 16  VDLDAISHNVALLRDRAGSAQVMPVLKADGYGHGATEVAKVVLDAGVTELGVATVGEALA 75

Query: 71  LRLYTPQARIFV-LYGIHPGQE---KIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYA 125
           LR     A +   L+G  PG +    +  D  L   +SSV QL      +   G++    
Sbjct: 76  LRADGITAPVLAWLHG--PGTDFAPAVQADIQL--AVSSVRQLGEILDAVHRTGMTATLT 131

Query: 126 LQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++ DTG +R G+S  E    L     +  +   ++  I+SHLAC D+P +  N  Q +R 
Sbjct: 132 VKADTGLSRNGVSPAEYPALLQRLAKAQAEDAVRVRGIMSHLACGDEPDNPTNDRQAQRL 191

Query: 183 RTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVV 236
             +       G+    A L +S   +  P+  F + RPGI++YG T         ++  +
Sbjct: 192 TDMRRQAADAGVTFEVAHLCNSPAAMTRPDLAFDMVRPGIAVYGQTPIPALGDMGLRPAM 251

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T    +   R   AG+ VSYG      RD+ +A+  IGYADG   +LSG           
Sbjct: 252 TLRCPVAQTRSIKAGDGVSYGHTWIAQRDTTVALLPIGYADGVYRSLSGRL--------- 302

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK----LDDVALASG 351
             +  I G + P +G+I MD  + D+    + +  GD   +FGP  +      D A   G
Sbjct: 303 --QVLINGRLRPGVGRICMDQFVVDLGPGPVDVSDGDEAILFGPGTRGEHTAQDWAEIIG 360

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++     R  + Y
Sbjct: 361 TINYEIVTSPRGRVVRTY 378


>gi|225848038|ref|YP_002728201.1| alanine racemase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643355|gb|ACN98405.1| alanine racemase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 356

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 173/368 (47%), Gaps = 42/368 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGV 69
           I+   LK N  ++   S N +  AVVK +AYG     ++  L +   V+ F V +  EG 
Sbjct: 10  INTENLKKNVENLYKFS-NKKIFAVVKADAYGHDACIVSKTLSSLDIVEGFCVATGYEGY 68

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
            LR       I VL GI   + ++    +L PVIS         KL    +     ++ D
Sbjct: 69  LLREAGITKPIIVLGGILKQELELFNRYSLTPVISDFSHFEVAQKLEHKKIH----IKFD 124

Query: 130 TGFNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           TG  RLG   S  E L      F     ++  I+SH   AD    +  S Q+E F+ ++ 
Sbjct: 125 TGMRRLGFYQSDIEKLKEKIKDF-----EVEGILSHFPSADTDPDYTKS-QIEEFKEIV- 177

Query: 188 HYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVVTAEA 240
             K ++ +     + +S+G++    +     R GI++YG  +K  + +P+    V+T  +
Sbjct: 178 --KMLDVNPKYIHIQNSAGVVYDCPF-CNTIRLGIAIYG--EKPTQDYPVSLYPVMTVLS 232

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I ++    G+ +SY G  K  RD  +AV + GYADG P +LS             G  
Sbjct: 233 KVISVKSVKKGDRISYCGTFKADRDMKVAVVSFGYADGLPRSLSN-----------KGYV 281

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
            I G    I+G ITMDMT+ D++D  ++ VGD + I G     +IK  D+A  SGT  Y+
Sbjct: 282 LINGKYCKIVGNITMDMTIVDVSDLDTVNVGDDVVIVGKLQDKEIKFSDIAKISGTIAYE 341

Query: 357 LLVRIGTR 364
           ++  I  R
Sbjct: 342 IMCGISKR 349


>gi|317490383|ref|ZP_07948867.1| alanine racemase [Eggerthella sp. 1_3_56FAA]
 gi|316910518|gb|EFV32143.1| alanine racemase [Eggerthella sp. 1_3_56FAA]
          Length = 467

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 169/382 (44%), Gaps = 35/382 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+++N  ++     N  R  AVVK + YG G  + A    N+G     V +V E 
Sbjct: 98  EIDLNAIRHNTSAVKQRIDNGVRLMAVVKADGYGHGAVRCAKTALNSGADYLGVATVNEA 157

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR     A I VL         ++    ++P V +S   + +     + GV  PY L 
Sbjct: 158 IELREALVNAPILVLSQPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADAYGVRAPYHLA 217

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           V+TG NR+G+   E ++F    SF++ L  L    +H A AD   +    +Q++RF   +
Sbjct: 218 VNTGMNRIGVRHDEVVEFMGQVSFHRAL-DLVGTFTHFATADSAETLDFQIQVKRFIEAV 276

Query: 187 SHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTA 238
           +  +  G+   +   A+S+  +  P+  F + R GI++YG    I  + PM      ++ 
Sbjct: 277 TALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHPSI-VTRPMIDLHPAMSV 335

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ARI  +R     E VSYG   +      I    +GYADG    LSG             
Sbjct: 336 HARITDVRTVPMSEGVSYGMNYRSPGSVKICTVPVGYADGLRRGLSGRTDV--------- 386

Query: 299 KGFIKGYMVPILGKITMDMTMFDI-------TDSLSIEVGDYIQIFGPD----IKLDDVA 347
              +KG     +G I MD  MF++          L   +GD + + G +    I LDD+A
Sbjct: 387 --ILKGQRCHQVGNICMDQCMFEVDLRVYGSRRRLDPMIGDEVLLVGREGDSVITLDDMA 444

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY+L      R  + Y
Sbjct: 445 NTLGTINYELACGFSLRMPRVY 466


>gi|59801649|ref|YP_208361.1| hypothetical protein NGO1295 [Neisseria gonorrhoeae FA 1090]
 gi|81311173|sp|Q5F788|ALR_NEIG1 RecName: Full=Alanine racemase
 gi|59718544|gb|AAW89949.1| putative alanine racemase [Neisseria gonorrhoeae FA 1090]
          Length = 352

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 176/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+S     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYTSAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|291617673|ref|YP_003520415.1| DadB [Pantoea ananatis LMG 20103]
 gi|291152703|gb|ADD77287.1| DadB [Pantoea ananatis LMG 20103]
          Length = 356

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 165/338 (48%), Gaps = 32/338 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N   +   +  +R  +VVK NAYG G  ++  +L  +    F + ++EE + 
Sbjct: 9   IDQQALRHNLAIVRRAAPTSRVWSVVKANAYGHGIARVWESL--SATDGFALLNMEEAIL 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL--Q 127
           LR    +  I +L G  HP    +I    L   + S  Q+     L +  +S P  L  +
Sbjct: 67  LREQGWKKPILLLEGFFHPDDLALIDRYRLTTSVHSNWQI---HALANATLSAPVDLYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG   ++     H     + +G ++L+ +H A A++P   V     E  + + 
Sbjct: 124 INSGMNRLGFRPEQVNGIWHKLRALENVGDITLM-AHFADAENPDGIV-----EPLKRIA 177

Query: 187 SHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240
              +G+++  SL++S+  L  P  H+   RPGI LYG +   N     S  ++ V+T  +
Sbjct: 178 QATEGLDSPVSLSNSACTLWHPEAHYDWVRPGIILYGASPSGNWQDIASSGLKPVMTLSS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II +++  AG+ V YG +   T+   I V A GYADGYP         H+P+   G   
Sbjct: 238 EIIGVQQLQAGDGVGYGYRYHATQPQRIGVVACGYADGYP--------RHAPT---GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            + G M  ++G ++MDM   D+T      +G  ++++G
Sbjct: 287 AVDGIMTQVVGAVSMDMITVDLTPCPQAGIGSSVELWG 324


>gi|194099058|ref|YP_002002139.1| Alr [Neisseria gonorrhoeae NCCP11945]
 gi|240014543|ref|ZP_04721456.1| Alr [Neisseria gonorrhoeae DGI18]
 gi|240016989|ref|ZP_04723529.1| Alr [Neisseria gonorrhoeae FA6140]
 gi|240081431|ref|ZP_04725974.1| Alr [Neisseria gonorrhoeae FA19]
 gi|240116062|ref|ZP_04730124.1| Alr [Neisseria gonorrhoeae PID18]
 gi|240118348|ref|ZP_04732410.1| Alr [Neisseria gonorrhoeae PID1]
 gi|240121065|ref|ZP_04734027.1| Alr [Neisseria gonorrhoeae PID24-1]
 gi|240123896|ref|ZP_04736852.1| Alr [Neisseria gonorrhoeae PID332]
 gi|240128570|ref|ZP_04741231.1| Alr [Neisseria gonorrhoeae SK-93-1035]
 gi|260440124|ref|ZP_05793940.1| Alr [Neisseria gonorrhoeae DGI2]
 gi|268601728|ref|ZP_06135895.1| alanine racemase [Neisseria gonorrhoeae PID18]
 gi|268604061|ref|ZP_06138228.1| alanine racemase [Neisseria gonorrhoeae PID1]
 gi|268682520|ref|ZP_06149382.1| alanine racemase [Neisseria gonorrhoeae PID332]
 gi|268686962|ref|ZP_06153824.1| alanine racemase [Neisseria gonorrhoeae SK-93-1035]
 gi|193934348|gb|ACF30172.1| Alr [Neisseria gonorrhoeae NCCP11945]
 gi|268585859|gb|EEZ50535.1| alanine racemase [Neisseria gonorrhoeae PID18]
 gi|268588192|gb|EEZ52868.1| alanine racemase [Neisseria gonorrhoeae PID1]
 gi|268622804|gb|EEZ55204.1| alanine racemase [Neisseria gonorrhoeae PID332]
 gi|268627246|gb|EEZ59646.1| alanine racemase [Neisseria gonorrhoeae SK-93-1035]
          Length = 352

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 176/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+S     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|325833467|ref|ZP_08165916.1| alanine racemase [Eggerthella sp. HGA1]
 gi|325485391|gb|EGC87860.1| alanine racemase [Eggerthella sp. HGA1]
          Length = 467

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 169/384 (44%), Gaps = 39/384 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+++N  ++     N  R  AVVK + YG G  + A    N+G     V +V E 
Sbjct: 98  EIDLNAIRHNTSAVKQRIDNGVRLMAVVKADGYGHGAVRCAKTALNSGADYLGVATVNEA 157

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR     A I VL         ++    ++P V +S   + +     + GV  PY L 
Sbjct: 158 IELREALVNAPILVLSQPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADAYGVRAPYHLA 217

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           V+TG NR+G+   E ++F    SF++ L  L    +H A AD   +    +Q++RF   +
Sbjct: 218 VNTGMNRIGVRHDEVVEFMGQVSFHRAL-DLVGTFTHFATADSAETLDFQIQVKRFIEAV 276

Query: 187 SHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLY-----GGTDKINKSHPMQTVV 236
           +  +  G+   +   A+S+  +  P+  F + R GI++Y     G T  +   HP  +V 
Sbjct: 277 TALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHPSGVTRPMIDLHPAMSV- 335

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              ARI  +R     E VSYG   +      I    +GYADG    LSG           
Sbjct: 336 --HARITDVRTVPMSEGVSYGMNYRSPGSVKICTVPVGYADGLRRGLSGRTDV------- 386

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-------TDSLSIEVGDYIQIFGPD----IKLDD 345
                +KG     +G I MD  MF++          L   +GD + + G +    I LDD
Sbjct: 387 ----ILKGQRCHQVGNICMDQCMFEVDLRVYGSRRRLDPMIGDEVLLVGREGDSVITLDD 442

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY+L      R  + Y
Sbjct: 443 MANTLGTINYELACGFSLRMPRVY 466


>gi|149369298|ref|ZP_01889150.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [unidentified eubacterium SCB49]
 gi|149356725|gb|EDM45280.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [unidentified eubacterium SCB49]
          Length = 367

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 175/373 (46%), Gaps = 29/373 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL+ N+H + + L  + +  AVVK N YG     IA  L +     F V    E
Sbjct: 9   LEIDLNALRQNYHFIKSKLKPSTKMLAVVKANGYGSDGVIIAKELSSLDCDYFAVAYAGE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR    +  I VL+ + P     I D  L P I S+  L  +          ++P  
Sbjct: 69  GVALRDAGIKTPILVLHPL-PVNFDTIIDNKLEPSIYSLKMLRDFIAFADSKNQKNYPIH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERFRT 184
           L+ +TG NRLG    E      +       ++  I SHLA ++D +  +    Q+++F+ 
Sbjct: 128 LKFNTGLNRLGFIASEIETMLQHIAETSSVKICSIFSHLAASEDANETIFTQNQIDQFQH 187

Query: 185 LISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYG-GTD-KINKSH-PMQTV 235
           +         Y+ I  +L ++SGIL  P   F + R GI +YG G D K +K   P+ ++
Sbjct: 188 ISEEITTQIGYQPIRHTL-NTSGILNFPEAQFDMVRCGIGIYGYGNDPKFDKELVPVLSL 246

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            T  ++I  +R+   G+ + Y  + + T     A   IG+ADG P +L     +   SVF
Sbjct: 247 KTVISQIHHLRE---GDTIGYNRKGQATTALKTATLPIGHADGLPRSL----GQGKASVF 299

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           + GK        PI+G + MDM M +ITD +    GD + IF      + +A    + +Y
Sbjct: 300 INGKA------APIIGNVCMDMIMVNITD-IECNEGDEVIIFDKKHTAEMLAEQMNSISY 352

Query: 356 DLLVRIGTRYAKF 368
           +LL  + +R  + 
Sbjct: 353 ELLTGLSSRIKRI 365


>gi|308232460|ref|ZP_07664093.1| alanine racemase alr [Mycobacterium tuberculosis SUMu001]
 gi|308370262|ref|ZP_07420828.2| alanine racemase alr [Mycobacterium tuberculosis SUMu002]
 gi|308371343|ref|ZP_07424633.2| alanine racemase alr [Mycobacterium tuberculosis SUMu003]
 gi|308372542|ref|ZP_07667405.1| alanine racemase alr [Mycobacterium tuberculosis SUMu004]
 gi|308373739|ref|ZP_07433510.2| alanine racemase alr [Mycobacterium tuberculosis SUMu005]
 gi|308374873|ref|ZP_07667888.1| alanine racemase alr [Mycobacterium tuberculosis SUMu006]
 gi|308376117|ref|ZP_07446099.2| alanine racemase alr [Mycobacterium tuberculosis SUMu007]
 gi|308377347|ref|ZP_07441912.2| alanine racemase alr [Mycobacterium tuberculosis SUMu008]
 gi|308378321|ref|ZP_07482199.2| alanine racemase alr [Mycobacterium tuberculosis SUMu009]
 gi|308379509|ref|ZP_07486543.2| alanine racemase alr [Mycobacterium tuberculosis SUMu010]
 gi|308380696|ref|ZP_07669258.1| alanine racemase alr [Mycobacterium tuberculosis SUMu011]
 gi|308213938|gb|EFO73337.1| alanine racemase alr [Mycobacterium tuberculosis SUMu001]
 gi|308324884|gb|EFP13735.1| alanine racemase alr [Mycobacterium tuberculosis SUMu002]
 gi|308329065|gb|EFP17916.1| alanine racemase alr [Mycobacterium tuberculosis SUMu003]
 gi|308332926|gb|EFP21777.1| alanine racemase alr [Mycobacterium tuberculosis SUMu004]
 gi|308336536|gb|EFP25387.1| alanine racemase alr [Mycobacterium tuberculosis SUMu005]
 gi|308340412|gb|EFP29263.1| alanine racemase alr [Mycobacterium tuberculosis SUMu006]
 gi|308344272|gb|EFP33123.1| alanine racemase alr [Mycobacterium tuberculosis SUMu007]
 gi|308348222|gb|EFP37073.1| alanine racemase alr [Mycobacterium tuberculosis SUMu008]
 gi|308352946|gb|EFP41797.1| alanine racemase alr [Mycobacterium tuberculosis SUMu009]
 gi|308356810|gb|EFP45661.1| alanine racemase alr [Mycobacterium tuberculosis SUMu010]
 gi|308360758|gb|EFP49609.1| alanine racemase alr [Mycobacterium tuberculosis SUMu011]
          Length = 347

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 166/363 (45%), Gaps = 50/363 (13%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR---LYTPQARIFVLYGIHPGQ 90
           AVVK + YG G  ++A     AG  +  V +V+E + LR   +  P     VL  +HP  
Sbjct: 2   AVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAP-----VLAWLHP-- 54

Query: 91  EKIIFDTNLIP----VISSVPQL-TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE---A 142
             I F   L+      +SS+ QL      +   G +    ++VDTG NR G+   +    
Sbjct: 55  PGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGLNRNGVGPAQFPAM 114

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK--GIE---ASLA 197
           L     +  +   +L  ++SH+  AD P   +N VQ +RF   ++  +  G+    A L+
Sbjct: 115 LTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLS 174

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV--VTAEARIILIRKALAGELVS 255
           +SS  +  P+  F L RPGI++YG    +     M  V  +T +  + L++   AGE VS
Sbjct: 175 NSSATMARPDLTFDLVRPGIAVYG-LSPVPALGDMGLVPAMTVKCAVALVKSIRAGEGVS 233

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF--LGGK--GFIKGYMVPILG 311
           YG      RD+ +A+  IGYADG               VF  LGG+    I G   P +G
Sbjct: 234 YGHTWIAPRDTNLALLPIGYADG---------------VFRSLGGRLEVLINGRRCPGVG 278

Query: 312 KITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK----LDDVALASGTTNYDLLVRIGTRYA 366
           +I MD  M D+    L +  GD   +FGP I+      D A   GT +Y+++     R  
Sbjct: 279 RICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRIT 338

Query: 367 KFY 369
           + Y
Sbjct: 339 RTY 341


>gi|257792515|ref|YP_003183121.1| alanine racemase [Eggerthella lenta DSM 2243]
 gi|257476412|gb|ACV56732.1| alanine racemase [Eggerthella lenta DSM 2243]
          Length = 441

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 169/384 (44%), Gaps = 39/384 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+++N  ++     N  R  AVVK + YG G  + A    N+G     V +V E 
Sbjct: 72  EIDLNAIRHNTSAVKQRIDNGVRLMAVVKADGYGHGAVRCAKTALNSGADYLGVATVNEA 131

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR     A I VL         ++    ++P V +S   + +     + GV  PY L 
Sbjct: 132 IELREALVNAPILVLSQPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADAYGVRAPYHLA 191

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           V+TG NR+G+   E ++F    SF++ L  L    +H A AD   +    +Q++RF   +
Sbjct: 192 VNTGMNRIGVRHDEVVEFMGQVSFHRAL-DLVGTFTHFATADSAETLDFQIQVKRFIEAV 250

Query: 187 SHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLY-----GGTDKINKSHPMQTVV 236
           +  +  G+   +   A+S+  +  P+  F + R GI++Y     G T  +   HP  +V 
Sbjct: 251 TALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHPSGVTRPMIDLHPAMSV- 309

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              ARI  +R     E VSYG   +      I    +GYADG    LSG           
Sbjct: 310 --HARITDVRTVPMSEGVSYGMNYRSPGSVKICTVPVGYADGLRRGLSGRTDV------- 360

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-------TDSLSIEVGDYIQIFGPD----IKLDD 345
                +KG     +G I MD  MF++          L   +GD + + G +    I LDD
Sbjct: 361 ----ILKGQRCHQVGNICMDQCMFEVDLRVYGSRRRLDPMIGDEVLLVGREGDSVITLDD 416

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY+L      R  + Y
Sbjct: 417 MANTLGTINYELACGFSLRMPRVY 440


>gi|309378149|emb|CBX23217.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 352

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 176/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+S     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|206975085|ref|ZP_03235999.1| alanine racemase [Bacillus cereus H3081.97]
 gi|217959579|ref|YP_002338131.1| alanine racemase [Bacillus cereus AH187]
 gi|222095721|ref|YP_002529778.1| alanine racemase [Bacillus cereus Q1]
 gi|206746506|gb|EDZ57899.1| alanine racemase [Bacillus cereus H3081.97]
 gi|217065584|gb|ACJ79834.1| alanine racemase [Bacillus cereus AH187]
 gi|221239779|gb|ACM12489.1| alanine racemase [Bacillus cereus Q1]
          Length = 391

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 71  EAIELREAGINVPILILGYTSVASAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 190 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|82751673|ref|YP_417414.1| alanine racemase [Staphylococcus aureus RF122]
 gi|82657204|emb|CAI81644.1| alanine racemase 1 [Staphylococcus aureus RF122]
          Length = 382

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 185/394 (46%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 62  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 116

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H  C
Sbjct: 117 NISDEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFVC 171

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q +RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 172 ADEPGD-MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 230

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 231 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 289

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 290 RIMQG--------SFVN----VNGHQCEVVGRVCMDQTIVKVPD--QVKAGDSVILIDNH 335

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++  A    T NY++L  +  R  + Y
Sbjct: 336 RESPQ-SVEVAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|329766869|ref|ZP_08258397.1| alanine racemase [Gemella haemolysans M341]
 gi|328837594|gb|EGF87219.1| alanine racemase [Gemella haemolysans M341]
          Length = 375

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 177/376 (47%), Gaps = 29/376 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +L+++L AL NN++ +N+L+      AVVK ++YGLG + IA  LY  GV+ F   ++EE
Sbjct: 8   QLRVNLDALLNNYNKLNSLNNEKIGLAVVKADSYGLGSKVIAEHLYQNGVRHFATATLEE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            ++L+     + + VL  I+    K   + N+     S   L      L          +
Sbjct: 68  ALELKDVIKDSMVLVLGVINSQNVKYAVENNVSLTCPSKEWLEESLVHLQQIEGKLKIHV 127

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF-RTL 185
           ++DTG  R+G S  E L    N  + +      I SH + AD    + ++ Q E F R+L
Sbjct: 128 KLDTGMGRIGTSDLEELKEIDNLLDSEKIDFEGIFSHYSNADGEDDNYDNYQTENFERSL 187

Query: 186 -ISHYKGIEASLASSSGILLGPNY--HFQLTRPGISLY-----GGTDKINKSHPMQTVVT 237
            I  +K     + +S+G +   N    + LTR GI++Y     G  +K++K   ++ V +
Sbjct: 188 KIFTHKPKYIHIENSAGTVKYSNRDDQYNLTRIGIAMYGCYPSGNIEKLDKVQ-LEPVAS 246

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +++  ++K  AG+ + YG   +  +D  IA   IGYADG      G        + +G
Sbjct: 247 LVSKVTHVKKFQAGQKLGYGVSYEAKQDEYIATVPIGYADGLLRRAQGF------KIRVG 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353
            +         I+G++ MD  M  +  S +++VGD +  FG      + +D+ A    T 
Sbjct: 301 SE------ECEIVGRVCMDQLM--VRCSKNVKVGDDVLFFGEYSGQKVSVDEFAEYQNTI 352

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  + Y
Sbjct: 353 SYEIFCCINKRVPRVY 368


>gi|15830939|ref|NP_309712.1| alanine racemase [Escherichia coli O157:H7 str. Sakai]
 gi|13361149|dbj|BAB35108.1| alanine racemase 2 [Escherichia coli O157:H7 str. Sakai]
          Length = 329

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 161/345 (46%), Gaps = 38/345 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  ++D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L+ SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLM-SHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  + II ++   AGE V YGG+     +  I + A GYADGYP         H+P+
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYP--------RHAPT 282

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
              G    + G     +G ++MDM   D+T     ++G  +   G
Sbjct: 283 ---GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQRDIGTPVGAVG 324


>gi|42781229|ref|NP_978476.1| alanine racemase [Bacillus cereus ATCC 10987]
 gi|42737151|gb|AAS41084.1| alanine racemase [Bacillus cereus ATCC 10987]
          Length = 391

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 71  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 190 AVNAAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|47566849|ref|ZP_00237567.1| alanine racemase [Bacillus cereus G9241]
 gi|47556478|gb|EAL14811.1| alanine racemase [Bacillus cereus G9241]
          Length = 391

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 71  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 190 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEGNIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|329121169|ref|ZP_08249797.1| alanine racemase [Dialister micraerophilus DSM 19965]
 gi|327470251|gb|EGF15712.1| alanine racemase [Dialister micraerophilus DSM 19965]
          Length = 365

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 166/375 (44%), Gaps = 33/375 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           KI L AL++N   + + +  N    A++K + YG G           G     V  V+EG
Sbjct: 7   KISLKALRHNLRLIRSTVPENVELMAILKSDGYGHGSIATLNIALEEGYSSAAVARVDEG 66

Query: 69  VKLRLYTPQARIFVL-----YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +KLR +     I+ L     Y +  G    + +  ++P+  +V   T  +          
Sbjct: 67  IKLRQHGFNCPIYTLGLPLPYDMPAG----VANDMIMPIDDTVDLKTMEAVAAVSNKEVK 122

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L VDTG NRLG+ L +  +F          +L    +H+A AD+        QL+ F 
Sbjct: 123 VMLTVDTGMNRLGIHLDKIPEFLKKLKRYPHLKLHGTFTHMATADEKDKTFAIAQLKEFE 182

Query: 184 T---LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
               L+   K    S A+S+GIL  P   + L RPGI +YG   +  + K+  +Q V++ 
Sbjct: 183 KALELLPKTKDFRISAANSAGILELPQSLYNLARPGIIMYGIYPSGDMKKNLDLQPVMSL 242

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +  I ++    GE V YG   K       A   IGYADGYP +LS     +   V +GG
Sbjct: 243 ISHCIHVQTLKKGETVGYGATYKAEHMMKTATIPIGYADGYPRSLS-----NKGYVLIGG 297

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           K        PI+G+I MD  M  + D  ++  GD + + G      I +++VA  + T  
Sbjct: 298 KKR------PIVGRICMDQLMVAVDD--TVRTGDQVVLIGEQGNEKITIEEVAELAETIP 349

Query: 355 YDLLVRIGTRYAKFY 369
           Y+L+  I  R  + Y
Sbjct: 350 YELMC-IFKRIIRVY 363


>gi|225016669|ref|ZP_03705861.1| hypothetical protein CLOSTMETH_00578 [Clostridium methylpentosum
           DSM 5476]
 gi|224950633|gb|EEG31842.1| hypothetical protein CLOSTMETH_00578 [Clostridium methylpentosum
           DSM 5476]
          Length = 388

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 179/386 (46%), Gaps = 47/386 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L +N+  +    G  R  A VK +AYG G + +A  L   G Q F V++++E +
Sbjct: 11  EINLDNLAHNYRHITRQLGTTRVIATVKADAYGHGEQHVASTLEKLGAQWFSVSNIDEAM 70

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH----PY 124
            LR +  +  I +L G  P ++ K + +  L   I S     +  +L S   SH    P 
Sbjct: 71  ALRRHGIRGDILIL-GFTPLEDAKELAEHQLTQTIFS---HEYARELSSWAQSHQVTLPV 126

Query: 125 ALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSS-HVNSVQ 178
            +++DTG  R+G      +  L+   + ++    +++   SHL+ AD  DP +      Q
Sbjct: 127 HIKIDTGMTRIGFLCNGYENDLEGVRSLYSLPGLRITGTFSHLSHADSTDPDAIAFTQAQ 186

Query: 179 LERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYG------GTDKIN 227
              F   +S  K +        L +S+G++      + L RPGISLYG       TDK  
Sbjct: 187 ARHFDEAVSALKQLGCDPGLTHLQNSAGVICLSGGKYDLARPGISLYGLNPSAEVTDK-- 244

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+  ++ I ++++   G  V YG     +  + IA   +GYADGY   LS   
Sbjct: 245 ---ELRPVLQLKSVISMVKQVGNGIPVGYGRSYVTSAPTRIATVPVGYADGYSRLLS--- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             +  SV +GGK        PI+G + MD  M D+T  +    GD + + G D    +  
Sbjct: 299 --NKGSVLVGGK------RAPIIGNVCMDQMMIDVT-GIDAAPGDEVTLIGTDGNLSVSA 349

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DD+A   GT +Y+++  I  R  + Y
Sbjct: 350 DDLADLIGTISYEIVCMISKRVPRVY 375


>gi|228933402|ref|ZP_04096256.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229138804|ref|ZP_04267385.1| Alanine racemase [Bacillus cereus BDRD-ST26]
 gi|228644720|gb|EEL00971.1| Alanine racemase [Bacillus cereus BDRD-ST26]
 gi|228826266|gb|EEM72045.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 408

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVASAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|262201658|ref|YP_003272866.1| alanine racemase [Gordonia bronchialis DSM 43247]
 gi|262085005|gb|ACY20973.1| alanine racemase [Gordonia bronchialis DSM 43247]
          Length = 381

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 177/383 (46%), Gaps = 30/383 (7%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDF 60
           ++  L   +DL A+    H+++ L   +RT   AVVK +AYG G   +A A   AG  + 
Sbjct: 2   TSAALTATVDLDAIA---HNISVLRETSRTDVLAVVKADAYGHGAVPVARAALAAGAAEL 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119
            V  + EG+ LR     A I      +          +L   +SS  QL        S G
Sbjct: 59  GVAVIGEGLALRAAGIDAHITTWLHTNSADFAAAIAADLDLALSSRRQLAAVVAAARSAG 118

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNS 176
            +   ++++DTG  R G++  E  DF  +   +  +   Q+  ++ HLA  D+P   +NS
Sbjct: 119 TTATASVKLDTGLGRSGVAPDEWADFADDLAKAVAEGAVQVRALMCHLARGDEPDHPLNS 178

Query: 177 VQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q  R     +    + A+     +A+S   L  P+    L RPGI++YGG     +   
Sbjct: 179 QQAARLDDARADLVRVGAAPEIMHIANSPAALTRPDLARDLVRPGIAIYGGAPIPGRDFG 238

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +   +T  A++ L+++  AG+ VSYG      RD+ IAV   GYADG P   SG      
Sbjct: 239 LIPAMTLRAQVALVKRIAAGQGVSYGHTWVADRDTTIAVIPAGYADGVPRPASG-----R 293

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDI----KLDDV 346
             + +G +      +V  +G+I MD  + D+  ++  I  GD+ ++FG       +  D 
Sbjct: 294 LRIRIGDR------VVDQVGRICMDQFVIDLGPEAGGIAEGDWAELFGTGADGGQRAQDW 347

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A GT +Y+++  IG R  + Y
Sbjct: 348 ADAVGTIDYEIVSGIGARAVREY 370


>gi|261400907|ref|ZP_05987032.1| alanine racemase [Neisseria lactamica ATCC 23970]
 gi|313667972|ref|YP_004048256.1| alanine racemase [Neisseria lactamica ST-640]
 gi|269209271|gb|EEZ75726.1| alanine racemase [Neisseria lactamica ATCC 23970]
 gi|313005434|emb|CBN86869.1| alanine racemase [Neisseria lactamica 020-06]
          Length = 352

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 176/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+S     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTEGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|229155693|ref|ZP_04283799.1| Alanine racemase [Bacillus cereus ATCC 4342]
 gi|228627679|gb|EEK84400.1| Alanine racemase [Bacillus cereus ATCC 4342]
          Length = 408

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMIRVGIGIYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|254426806|ref|ZP_05040513.1| alanine racemase [Alcanivorax sp. DG881]
 gi|196192975|gb|EDX87934.1| alanine racemase [Alcanivorax sp. DG881]
          Length = 353

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 164/368 (44%), Gaps = 36/368 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++I  +AL +N      L+  A   A+VK N YG G    A A++   V    V  VEE
Sbjct: 5   RVEIRPSALAHNARLARQLADGAEVFAMVKANGYGHGLLLAADAMHE-NVSGLGVALVEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
              LR +     I V  G    +E K     +L  V+ S  Q+     L++        L
Sbjct: 64  ARALREHGMTLPILVAEGFFDAEELKEAERLSLEVVVHSQWQVEL---LLASPCPVRIWL 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +V+TG NRLG     AL          +  +  ++SH ACAD      +  QL      I
Sbjct: 121 KVNTGMNRLGFRPDTALQAAAQLRAGGMAPVG-VMSHFACADVSQDAYSEKQL-LVAGQI 178

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE------- 239
           +    +  S ++S+ +L  P  H Q  RPGI LYG       S P      +E       
Sbjct: 179 AEQLMLPLSASNSAALLRYPQSHAQRVRPGIMLYG-------SSPFDWQTASELGLAVSH 231

Query: 240 ---ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              AR+I I    AGE V YG          +AV A+GY DGYP         H+PS   
Sbjct: 232 RFTARVIAINAVEAGESVGYGATWTAAEPRQVAVVAVGYGDGYP--------RHAPS--- 280

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G +  ++G+++MDM   D+T  L   VGD ++++G  + +DDVA A GT +Y+
Sbjct: 281 GTPVAVNGNITELVGRVSMDMLTVDVT-GLDASVGDEVELWGDVVDVDDVARACGTISYE 339

Query: 357 LLVRIGTR 364
           L  +I  R
Sbjct: 340 LFCQITGR 347


>gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD]
          Length = 741

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 168/358 (46%), Gaps = 32/358 (8%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L    +  A+VK  +YGLG  +IA  L +  +    V   +EGV+LR       I V+  
Sbjct: 399 LKPETKIMAMVKAYSYGLGGYEIAEFLQHHHIDYLGVAVADEGVELRKNGITVPIVVM-- 456

Query: 86  IHPGQE--KIIFDTNLIPVISSVPQLT-FYSKLMSCGVS--HPYALQVDTGFNRLGLSLQ 140
            +P Q     I + NL P I S   L  F+ +L   G    +P  ++++TG +RLG   +
Sbjct: 457 -NPEQHSYNTIIEYNLEPNIYSFRVLELFHKQLKQNGYEGRYPIHIKLETGMHRLGFK-E 514

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFRTLISH------YKGIE 193
           + +D   +  N+   ++  I SHL+ +D P     ++ Q ++F  L  +      YK + 
Sbjct: 515 DEIDQLKDYLNQMSVKVESIFSHLSSSDIPQEKDYTLAQCQKFDKLSQNIIKDLNYKPLR 574

Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGEL 253
             L +S+GI     Y   + R GI + G +        +  VV  ++ I  I +    + 
Sbjct: 575 HIL-NSAGITNYTYYQMDMVRIGIGMMGISASPEIQPLLNPVVAFKSVISQISEIQPNDS 633

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF--IKGYMVPILG 311
           VSYG + K ++ + IA   +GYADG P  LS             G G+  IK  + PI+G
Sbjct: 634 VSYGRRYKASKSTRIATIPVGYADGVPRLLS------------NGVGYVGIKNTLCPIVG 681

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            + MDM M DI+D L  + GD + IF     L+D A+ S T  Y++L  I  R  + Y
Sbjct: 682 SVCMDMMMVDISD-LPTKEGDEVTIFHEKPSLEDFAMYSQTIPYEVLTSISRRVKRVY 738


>gi|160895303|ref|ZP_02076074.1| hypothetical protein CLOL250_02862 [Clostridium sp. L2-50]
 gi|156862996|gb|EDO56427.1| hypothetical protein CLOL250_02862 [Clostridium sp. L2-50]
          Length = 388

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 184/388 (47%), Gaps = 39/388 (10%)

Query: 4   NEFLRLK--IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           N++ R++  I+L  ++ N   M A +  + +  AV+K +AYG G  +++ AL +  + DF
Sbjct: 2   NKYRRIEADINLDNIRENIKMMKACVPESMKMLAVIKADAYGHGAVEVSRALSD--LADF 59

Query: 61  F-VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           + +  ++E V+LR    +  + +L    P +   +   ++ P +    +    S   +  
Sbjct: 60  YAIACIDEAVELRHAGCEKPLLILGYTDPSEYDELITYDVRPAMYDKAECAILSDDAVKK 119

Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-----LDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           G      +++DTG +R+G    +A     ++  H    +  G    I +H + AD+    
Sbjct: 120 GTKAKIHIKMDTGMSRIGFQCDDAGINDIVEIAHMPGIEVEG----IFTHYSKADEYDKT 175

Query: 174 VNSVQLERFRTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKI 226
             + QL  FR++I     +GI      +++S+GI+   N  F + R GI  YG   +D++
Sbjct: 176 AANGQLALFRSVIGRLEERGISIPVKHISNSAGIMEMDNEGFDMVRSGIVTYGLYPSDEV 235

Query: 227 NKS-HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           + S   ++  +   A+++ ++   AG  + YG       D  IA  + GYADGYP   S 
Sbjct: 236 DHSIAALKPAMELLAKVVHVKDVKAGTGIGYGWTFVAPHDMRIATVSAGYADGYPRAQSN 295

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDI 341
           +           G+  I G   PI G++ MD  M D++D     VGD + + G     +I
Sbjct: 296 I-----------GRVIIHGKYAPITGRVCMDQFMIDVSDIPETAVGDTVVLIGKCGDKEI 344

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +++VA  + + NY+L+  IG R  + Y
Sbjct: 345 TVEEVAEPANSFNYELICNIGRRVPRVY 372


>gi|315925455|ref|ZP_07921666.1| alanine racemase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621356|gb|EFV01326.1| alanine racemase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 426

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 178/373 (47%), Gaps = 26/373 (6%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  + +N H++    G  A   AVVK +AYG G E +   L + GV    V  ++E 
Sbjct: 46  EINLDNVVSNLHAIQKHVGPGAALIAVVKADAYGHGIE-LVQTLQDEGVGRMAVAFLDEA 104

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVP---QLTFYSKLMSCGVSHPY 124
           + LR         +L G+    Q   I + ++ P + S+     L+ Y+      V+   
Sbjct: 105 IALRQKGIDRCDIMLLGVTLTDQIPEIVEWDIEPTVDSLDFARALSEYAVKNDVVVN--V 162

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++VDTG  R+G    EA +            L  + +H A AD+       +Q++R+  
Sbjct: 163 HVKVDTGMGRIGFRWDEAAEAIAAMAELPGINLLGLFTHFATADEADKTFTQLQMKRYLD 222

Query: 185 LIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVV 236
           +    + +GI+  L    +S+ I+      F   RPGI LYG   +D++ K+  P++ V+
Sbjct: 223 VTRALNARGIQIPLKHVENSASIIDFGKTAFNAVRPGIILYGLYPSDEVKKAQLPLRPVM 282

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T + RII ++   AG+   YG +     D  IA  A+GYADGY   LSG           
Sbjct: 283 TFKTRIIHLKTVHAGDSCGYGRRFIAEGDRKIATLAVGYADGYTRMLSGK---------- 332

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G + +I G   P++G I MD  M D+TD     + D +++FG  + ++++A   GT NY+
Sbjct: 333 GAEVWIHGRRAPVVGNICMDQCMVDVTDVPEAALFDEVELFGEHLPVEELAEKLGTINYE 392

Query: 357 LLVRIGTRYAKFY 369
           L+  +  R  + Y
Sbjct: 393 LVCMVNKRVPRLY 405


>gi|258510371|ref|YP_003183805.1| alanine racemase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477097|gb|ACV57416.1| alanine racemase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 400

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 157/348 (45%), Gaps = 42/348 (12%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL  L +N   + + L   A     VK +AYG G   +   L   GV    V S+EE +
Sbjct: 9   IDLAHLSHNIRYLKSRLRPGASLMVAVKADAYGHGVRAVVGRLVREGVHHVAVASLEEAL 68

Query: 70  KLRLYTPQARIFVLYGIHPGQ-------EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++R +     I VL  + P         E  I  T+L P I  +P+L    ++       
Sbjct: 69  EIRAFHRGVNILVLGAVTPDACMKAAEAEVEIALTDLSP-IDEIPRLPKRLRVH------ 121

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +DTG NRLG+    EA+        ++  +L    +HLA AD       + Q+ER
Sbjct: 122 ---LPLDTGMNRLGVKRTDEAVALARAIAKREDLELVGAGTHLAAADAEDPAHAAGQMER 178

Query: 182 FRTLISHYKGIEASL-------ASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPM 232
               +   +  +A L        +S+ +L  P +H  + R GI+ YG +    +  +  +
Sbjct: 179 LGAFVRALE--QAGLRPPRIHAGNSAALLRNPAWHLDMVRVGIAAYGYSPDPSVLPAPSL 236

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++  A ++ + +A  GE V YG    +TR   IA  A GYADGYP  LS        
Sbjct: 237 RPVMSLYAGVLRVAQAQPGETVGYGATFTVTRPMTIATVAGGYADGYPRHLSN------- 289

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                G+  ++G   P++G++ MD  M D+T  L +  GD + +FG D
Sbjct: 290 ----EGEVLVRGEFRPVIGRVCMDQLMVDVT-GLDVATGDVVALFGYD 332


>gi|154500483|ref|ZP_02038521.1| hypothetical protein BACCAP_04155 [Bacteroides capillosus ATCC
           29799]
 gi|150270714|gb|EDM98010.1| hypothetical protein BACCAP_04155 [Bacteroides capillosus ATCC
           29799]
          Length = 715

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 168/377 (44%), Gaps = 34/377 (9%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +ID +AL +N   +  L        AVVK NAYG G    A    ++GV+ F V ++EEG
Sbjct: 350 EIDRSALVHNISQLTGLLPSGCELMAVVKANAYGHGDVLTARVCMSSGVKAFAVATLEEG 409

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR    +  I +L    P Q + +    L   + S    T+  +L          L V
Sbjct: 410 IRLRQAGMKGEILILGWTPPEQAQQLTRWRLSQAVVS---RTYAEELSHSAHRVKVHLAV 466

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD----DPSSHVNSVQLERFR- 183
           DTG +RLGLS  +          K+L +++ + +HLA ++    D   H    QL RF  
Sbjct: 467 DTGMHRLGLSWDDGDGLLAVCRLKQL-RVTGLFTHLAFSESLEPDAVGHTRE-QLHRFYQ 524

Query: 184 ----TLISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYG----GTDKINKSHPMQT 234
                + + Y  +     SS G+L  P        RPGI+LYG      +++     ++ 
Sbjct: 525 AADLVISAGYGPVALHALSSYGLLNCPKQAGMAYARPGIALYGVLSRPDEQVGTLPDLRP 584

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  A+I  I     G+   Y G    +  + +A   IGYADGYP +LS          
Sbjct: 585 VLSLRAKIARIHNLEPGDCAGYDGAFAPSASARVAAVTIGYADGYPRSLSNGK------- 637

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              GK  I+G   P+ G I MD  + D+T     +  D + + G D    +  ++VA  +
Sbjct: 638 ---GKVLIRGKFAPVAGLICMDQLLVDVTGIPEAQEDDTVTLIGRDGENILTAEEVARDA 694

Query: 351 GTTNYDLLVRIGTRYAK 367
           GT   +LL R+G R  +
Sbjct: 695 GTITNELLSRLGERVTR 711


>gi|313892618|ref|ZP_07826205.1| alanine racemase [Dialister microaerophilus UPII 345-E]
 gi|313119015|gb|EFR42220.1| alanine racemase [Dialister microaerophilus UPII 345-E]
          Length = 365

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 165/371 (44%), Gaps = 25/371 (6%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           KI L AL++N   + + +  N    A++K + YG G           G     V  V+EG
Sbjct: 7   KISLKALRHNLRLIRSTVPENVELMAILKSDGYGHGSIATLNIALEEGYSSAAVARVDEG 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +KLR +     I+ L    P    + + +  ++P+  +V   T  +            L 
Sbjct: 67  IKLRQHGFNCPIYTLGLPLPYDMPVGVANDMIMPIDDTVDLKTMEAVAAVSNKEVKVMLT 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184
           VDTG NRLG+ L +  +F          +L    +H+A AD+        QL+ F     
Sbjct: 127 VDTGMNRLGIHLDKIPEFLKKLKRYPHLKLHGTFTHMATADEKDKTFAIAQLKEFEKALE 186

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARI 242
           L+   K    S A+S+GIL  P   + L RPGI +YG   +  + K+  +Q V++  +  
Sbjct: 187 LLPKTKDFRISAANSAGILELPQSLYNLARPGIIMYGIYPSGDMKKNLDLQPVMSLISHC 246

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    GE V YG   K       A   IGYADGYP +LS     +   V +GGK   
Sbjct: 247 IHVQTLKKGETVGYGATYKAEHMMKTATIPIGYADGYPRSLS-----NKGYVLIGGKKR- 300

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358
                PI+G+I MD  M  + D  ++  GD + + G      I +++VA  + T  Y+L+
Sbjct: 301 -----PIVGRICMDQLMVAVDD--TVRTGDQVVLIGEQGNEKITIEEVAELAETIPYELM 353

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 354 C-IFKRIIRVY 363


>gi|289828987|ref|ZP_06546687.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
          Length = 279

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 124/246 (50%), Gaps = 24/246 (9%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           ++V++G NRLG   + A          + +G+++L+ SH A AD P         E  R 
Sbjct: 45  VKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLM-SHFAQADHPEGIG-----EAMRR 98

Query: 185 LISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTA 238
           +    +G++   SL++S+  L  P  H+   RPGI LYG    G  +      ++ V+T 
Sbjct: 99  IALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTL 158

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG   +T++  I + A GYADGYP         H+P+   G 
Sbjct: 159 SSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT---GT 207

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y LL
Sbjct: 208 PVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLL 267

Query: 359 VRIGTR 364
             +  R
Sbjct: 268 CAVAPR 273


>gi|224367598|ref|YP_002601761.1| Alr [Desulfobacterium autotrophicum HRM2]
 gi|223690314|gb|ACN13597.1| Alr [Desulfobacterium autotrophicum HRM2]
          Length = 387

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 177/390 (45%), Gaps = 46/390 (11%)

Query: 10  KIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +IDL A+ +N  ++ AL+  A TA  AVVK +AYG G  ++A     +GV    V  + E
Sbjct: 14  QIDLDAIAHNLKTLRALT-KAHTAVMAVVKADAYGHGAVRVAKKALESGVTHLGVARLHE 72

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126
            ++LR     A I V   I       +    + P +  +      S + ++ G      L
Sbjct: 73  ALELRNAGINAPILVFGYIPESDVDTLIALEVSPTVFDLETACMLSERAVAKGTHIKIHL 132

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS--------------HLACADDPSS 172
           +VDTG  RLG+     L  +    ++K G L+ +++              H A AD    
Sbjct: 133 KVDTGMGRLGI-----LPDSRRPSSEKKGALAEVLTISALPGLKIEGIYTHFAAADTLDK 187

Query: 173 HVNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDK 225
                Q + F   I   K  GIE  L   A+S+ ++  P  HF + R GI++YG   + +
Sbjct: 188 GYAEYQHQTFMAFIEGLKHLGIEIPLVHSANSAALIDLPEAHFNMVRAGIAMYGLAPSGE 247

Query: 226 IN-KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
           ++ +S  ++  +   + I  ++K      VSYG   +  ++++IA   IGYADG+    S
Sbjct: 248 VDIRSLDLRPAMEIHSIITSVKKVPKSFKVSYGMTYETEKETVIAAVPIGYADGFSRLFS 307

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                        G+  ++G   PI G++ MD T+ D+ +   ++ GD + I G      
Sbjct: 308 SR-----------GEMIVRGRKAPIAGRVCMDQTLIDVGEIPGVKPGDEVVILGTQANQR 356

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           I  D++A   GT NY+++  +  R  K Y+
Sbjct: 357 ITADEMAETIGTINYEVISSLTARVPKIYS 386


>gi|300723428|ref|YP_003712733.1| alanine racemase [Xenorhabdus nematophila ATCC 19061]
 gi|297629950|emb|CBJ90570.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus nematophila
           ATCC 19061]
          Length = 355

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 161/361 (44%), Gaps = 27/361 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L A ++N   +    G ++  +VVK NAYG G ++I  +L       F +  + E + 
Sbjct: 9   IHLNAFRHNLAVIRQRIGKSKIWSVVKANAYGHGLDRIWQSLMQT--DGFALLDMNEAIY 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    Q  I +L G     +  I +T +L   + S  QL    K+        Y L+++
Sbjct: 67  LREQGWQGPILLLEGFFKSTDLQIINTYSLTTAVHSYWQLEEIEKITLDKPIDIY-LKLN 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G NRLG + +E       +   K      ++SH   +D      N + +    ++I   
Sbjct: 126 SGMNRLGFTPKEYPQAASMAAGIKNINSVTLMSHFPNSD------NEIGVREQLSVIERL 179

Query: 190 K--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARII 243
           +   +   LA+S  +L  P  H    RPGI LYG +            ++  +T ++ II
Sbjct: 180 QMNSLPHCLANSGAVLWHPETHQDWVRPGIILYGASPSGKWCDIADVGLKATMTLQSEII 239

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +     GE + YG +    +   +   A GYADGYP         H+P+   G    + 
Sbjct: 240 AVHTLSKGEKIGYGSRYTTQKTMRVGTVACGYADGYP--------RHAPT---GTPIMVD 288

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    +LG ++MDM   D+T      +G  ++++G D+ +D+VA ++GT  Y+LL  +  
Sbjct: 289 GVRTQLLGAVSMDMLTVDLTPCPQANIGSVVELWGEDLPVDEVAESAGTIGYELLCALTR 348

Query: 364 R 364
           R
Sbjct: 349 R 349


>gi|283471286|emb|CAQ50497.1| alanine racemase [Staphylococcus aureus subsp. aureus ST398]
          Length = 382

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 185/394 (46%), Gaps = 54/394 (13%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 62  FAVATLDEAIELRMHGITAKILVL-GVLPAKD---IDKAIQHRVALTVPSKQWLKEAIK- 116

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 117 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 171

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q  RF+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 172 ADEPGD-MTTEQYHRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 230

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               +  K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY 
Sbjct: 231 EYVQQKVKVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYL 289

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
             + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +    
Sbjct: 290 RIMQG--------SFVN----VIGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNH 335

Query: 338 --GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              P   ++  A    T NY++L  +  R  + Y
Sbjct: 336 RESPQ-SVEVAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|315022146|gb|EFT35175.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Riemerella anatipestifer RA-YM]
          Length = 814

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 168/358 (46%), Gaps = 32/358 (8%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L    +  A+VK  +YGLG  +IA  L +  +    V   +EGV+LR       I V+  
Sbjct: 472 LKPETKIMAMVKAYSYGLGGYEIAEFLQHHHIDYLGVAVADEGVELRKNGITVPIVVM-- 529

Query: 86  IHPGQE--KIIFDTNLIPVISSVPQLT-FYSKLMSCGVS--HPYALQVDTGFNRLGLSLQ 140
            +P Q     I + NL P I S   L  F+ +L   G    +P  ++++TG +RLG   +
Sbjct: 530 -NPEQHSYNTIIEYNLEPNIYSFRVLELFHKQLKQNGYEGRYPIHIKLETGMHRLGFK-E 587

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFRTLISH------YKGIE 193
           + +D   +  N+   ++  I SHL+ +D P     ++ Q ++F  L  +      YK + 
Sbjct: 588 DEIDQLKDYLNQMSVKVESIFSHLSSSDIPQEKDYTLAQCQKFDKLSQNIIKDLNYKPLR 647

Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGEL 253
             L +S+GI     Y   + R GI + G +        +  VV  ++ I  I +    + 
Sbjct: 648 HIL-NSAGITNYTYYQMDMVRIGIGMMGISASPEIQPLLNPVVAFKSVISQISEIQPNDS 706

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF--IKGYMVPILG 311
           VSYG + K ++ + IA   +GYADG P  LS             G G+  IK  + PI+G
Sbjct: 707 VSYGRRYKASKSTRIATIPVGYADGVPRLLS------------NGVGYVGIKNTLCPIVG 754

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            + MDM M DI+D L  + GD + IF     L+D A+ S T  Y++L  I  R  + Y
Sbjct: 755 SVCMDMMMVDISD-LPTKEGDEVTIFHEKPSLEDFAMYSQTIPYEVLTSISRRVKRVY 811


>gi|254805407|ref|YP_003083628.1| Alanine racemase [Neisseria meningitidis alpha14]
 gi|254668949|emb|CBA07214.1| Alanine racemase [Neisseria meningitidis alpha14]
          Length = 352

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 176/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+      P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLVRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGGDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         H+PS   
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYP--------RHAPS--- 279

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 280 NSPVAVDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|332519358|ref|ZP_08395825.1| alanine racemase [Lacinutrix algicola 5H-3-7-4]
 gi|332045206|gb|EGI81399.1| alanine racemase [Lacinutrix algicola 5H-3-7-4]
          Length = 368

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 178/384 (46%), Gaps = 48/384 (12%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL ALK+N  +  + LS + +  AV+K  AYG    +IA  L N  V  F V    E
Sbjct: 9   LEIDLKALKHNVGYIKSKLSKDTKFLAVIKAFAYGSDALEIAKYLENLNVDYFAVAYTNE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHP 123
           GV LR    +  I VL   HP  E  K I +  L P I S   L  +  +       ++P
Sbjct: 69  GVALRDAGIETPILVL---HPQPENFKTIIERCLEPNIYSQRVLKSFIAVAENLKQNNYP 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSV- 177
             ++ ++G NRLG ++ +       + NK L Q + I      SHLA ++D +    ++ 
Sbjct: 126 IHIKYNSGLNRLGFNVNDI-----EAINKTLKQTAAIKVKSLFSHLAASEDLNEREFTLN 180

Query: 178 QLERFRTLIS------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           Q+  F+T  +      +YK +    +++SGIL  P  HF + R GI LYG  +    +  
Sbjct: 181 QIHNFKTFANTLTKALNYK-VLLHQSNTSGILNYPEAHFSMVRCGIGLYGFANDNAYNKN 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  + T +  I  I     GE + Y    K ++ +  A   IG+ADG             
Sbjct: 240 LIPIATLKTIISQIHTLNVGESLGYNRAFKASKITKTATLPIGHADGIGRQ--------- 290

Query: 292 PSVFLGGKGFI-----KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
              +  GKGF+     K Y+V   G + MDM M D+TD +  + GD + IFGP  K++ +
Sbjct: 291 ---YGNGKGFVYVNEQKAYIV---GNVCMDMIMVDVTD-IDCKEGDEVIIFGPKHKINSL 343

Query: 347 ALASGTTNYDLLVRIGTRYAK-FY 369
                T  Y+LL  +  R  + FY
Sbjct: 344 TKTVDTIPYELLTAVSQRIKRAFY 367


>gi|229196342|ref|ZP_04323090.1| Alanine racemase [Bacillus cereus m1293]
 gi|228587196|gb|EEK45266.1| Alanine racemase [Bacillus cereus m1293]
          Length = 408

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVASAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVIGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|238061049|ref|ZP_04605758.1| alanine racemase [Micromonospora sp. ATCC 39149]
 gi|237882860|gb|EEP71688.1| alanine racemase [Micromonospora sp. ATCC 39149]
          Length = 372

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 173/378 (45%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A++ N   + A + +A   AVVK + YG G    A A  +AG     V +++E 
Sbjct: 6   VRVDLDAIRENVTRLRAGT-SAELMAVVKGDGYGHGMLPSARAALDAGADWLGVCTLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPG---QEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPY 124
           + LR     A +   + + PG    E +    +L    ++ + ++   S+L   G     
Sbjct: 65  LALRRAGIDAPVLA-WLLAPGLPLHEGVAVGVDLAAASLTQLAEMVEASQL--AGRPARL 121

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L++DTG  R G ++ +    L+    +    L ++  + SH   AD P       QL  
Sbjct: 122 HLKIDTGLARGGATVADWPALLEAAAKAQADGLIEVVGVWSHFVYADLPGHPTTDRQLAI 181

Query: 182 FRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F   +      G+      LA+S+  L  P+ HF L RPGI++YG +    +   ++  +
Sbjct: 182 FHEGLDMVERAGLRPRYRHLANSAATLTRPDTHFDLVRPGIAIYGLSPVAGERFGLRPAM 241

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           TA AR++L ++  AG  VSYG       D+ +AV  +GYADG P         H+ +   
Sbjct: 242 TARARVMLTKRVPAGSGVSYGHTYLTEADANLAVVPLGYADGVP--------RHASNT-- 291

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
            G   + G    + G++ MD  + D  D   +  GD   +FGP    +   DD A A GT
Sbjct: 292 -GPVQLAGRRRTVSGRVCMDQFVIDCGDD-PVAAGDVATLFGPGTGGEPTADDWAEAVGT 349

Query: 353 TNYDLLVRI-GTRYAKFY 369
            NY+++ R  G R  + Y
Sbjct: 350 INYEIVTRFGGVRVPRVY 367


>gi|32265965|ref|NP_859997.1| alanine racemase [Helicobacter hepaticus ATCC 51449]
 gi|32262014|gb|AAP77063.1| alanine racemase [Helicobacter hepaticus ATCC 51449]
          Length = 413

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 164/350 (46%), Gaps = 31/350 (8%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++N F+  ++D+ A KNN      ++GNA+  AV+K NAYG G  K+ P +    +    
Sbjct: 37  NTNSFM--EVDIKAFKNNIKVAKKIAGNAKVCAVLKANAYGAGISKVLPTIIEEKIPCVA 94

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120
           +TS EE   +R       I  +     G+ K     N+  V+ ++ Q      L  + G 
Sbjct: 95  ITSNEEARVIRKMKYTGEILRIRTATMGEIKDGLKYNITEVLGNLDQAKKVDSLAKTIGK 154

Query: 121 SHPYALQVDT-GFNRLGLSLQEALDFTHNSFNK--KLGQLSL--IISHLACADDPSSHVN 175
             P  +++++ G +R G+ L  + D    S  K   L  L +  +++H    D      N
Sbjct: 155 KLPIHIKLNSGGMDRNGIDL--STDKGKESAVKLATLPHLKIKGLMTHFPYDDTSKVKEN 212

Query: 176 SVQLERFRT-LISHYKGIEASL----ASSSGILLGPNYHFQLTRPG--ISLYGGTDKINK 228
               E     LIS  K     L    A+S   +  P     + RPG  I  YGG D   +
Sbjct: 213 LKHFEEDTDFLISKAKLDRNKLVLHAAASYAAVQVPQSRLDMIRPGKLIYGYGGGD---E 269

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           + P+Q +++ ++++ +I +   G  VSY G   LTRDS +A   +GY DGY  +LS    
Sbjct: 270 NLPIQQIMSLKSQVAVINEYPKGSKVSYDGTHTLTRDSKLANIPVGYYDGYAKSLSNQ-- 327

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                    GK  I+G+ VP++G++T +  M D+TD   I+ GD + +FG
Sbjct: 328 ---------GKVLIRGHKVPVVGRVTKNTFMVDVTDYPDIKAGDEVVLFG 368


>gi|86131244|ref|ZP_01049843.1| Alanine racemase [Dokdonia donghaensis MED134]
 gi|85818655|gb|EAQ39815.1| Alanine racemase [Dokdonia donghaensis MED134]
          Length = 366

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 167/371 (45%), Gaps = 25/371 (6%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+IDL AL++N+  M + +S   +  AVVK  AYG   + +A  L    V  F V  VE
Sbjct: 5   RLEIDLRALRHNYAYMRSKVSPGVKVMAVVKAFAYGSDAQVVAQELEKLNVDYFAVAYVE 64

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124
           EGV LR       I VL+   P   + + +  L P I S   L  +S         ++P 
Sbjct: 65  EGVALRDAGITTPILVLHP-QPDNFETLLERCLEPNIYSRRMLEMFSAFAKAKKQTAYPI 123

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFR 183
            L+ +TG NRLG + ++      N    +  ++  + SHLA ++D      ++ Q+ +F 
Sbjct: 124 HLKFNTGLNRLGFTGEDVPWIVKNVLKSEHLKVKSLFSHLAASEDLDERDFTLHQIAQFD 183

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
            + +  K          + ++SGI+  PN H+   R GI LYG  +   ++  ++ V   
Sbjct: 184 EIANEIKTQLGYAPFMHMTNTSGIINYPNAHYDCVRTGIGLYGYGNTPEETANLKPVARL 243

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + I        G+ V Y          + A   IG+ADG                +  G
Sbjct: 244 NSVISQKHIINPGDSVGYNRALVAKEKMVTATIPIGHADGI------------SRAYGNG 291

Query: 299 KGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
            G+  I G   P +G + MDM M ++T+ ++ E GD ++IFG     + ++    + +Y+
Sbjct: 292 VGYVTIAGEKAPFVGNVCMDMIMVNVTN-IACEEGDDVEIFGTQTGAETLSQQVQSISYE 350

Query: 357 LLVRIGTRYAK 367
           LL  +G R  +
Sbjct: 351 LLTMVGQRVKR 361


>gi|308234426|ref|ZP_07665163.1| alanine racemase [Atopobium vaginae DSM 15829]
 gi|328944273|ref|ZP_08241737.1| alanine racemase [Atopobium vaginae DSM 15829]
 gi|327491192|gb|EGF22967.1| alanine racemase [Atopobium vaginae DSM 15829]
          Length = 385

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 180/392 (45%), Gaps = 41/392 (10%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N +  ++I+L+AL+ N  +   L + + R   VVK +AYG G    A A+ +AG   F V
Sbjct: 8   NRWSWVEINLSALRRNVRTFKKLLNPSVRLVCVVKADAYGHGAAACARAMSSAGANQFAV 67

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVP-QLTFYSKLMSCG 119
            +V+EG+ LR       I +L    P +  I  + + +LIP I +    L +  + ++  
Sbjct: 68  ATVDEGIALRKSGITQPIVLLS--EPPETAIDDLIEYSLIPTIYTTEFVLAYGERCVAHN 125

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               Y + +DTG  R+G++  +A++F H   F++ +  +    +H A AD         Q
Sbjct: 126 TVGKYHMALDTGMTRVGVAASDAVEFRHTIDFHRGISCIG-TSTHFATADIEGDWDFRRQ 184

Query: 179 LERFRTLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
            + F   I   H  G    L    S++  +L P   F + R GI LYG   ++       
Sbjct: 185 YQVFSDAIRELHAAGFYTGLIHCNSTAATILHPELQFDMCRVGIGLYGLHPSEATVSRLE 244

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSG-LDSE 289
           +  V++ +AR++   +   G+ VSYG   +++   L IA   +GYADG   +LS  +D  
Sbjct: 245 LSPVMSVKARVVRAVEPRIGDGVSYGMTYRVSDPHLQIATIPLGYADGLSRSLSNKMDV- 303

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT-DSLS-------IEVGDYIQIFGPD- 340
                       +KG  V  +G+I MD  MF     +L+       IE GD + + G D 
Sbjct: 304 -----------LVKGQRVHQVGRICMDQCMFAYPLQTLAHPQGFAPIERGDVVTVLGEDG 352

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              I  D++A    T NY++L     R  + Y
Sbjct: 353 AEYISADELAALRNTINYEVLCDFSLRLERIY 384


>gi|16078827|ref|NP_389646.1| alanine racemase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309646|ref|ZP_03591493.1| hypothetical protein Bsubs1_09706 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313968|ref|ZP_03595773.1| hypothetical protein BsubsN3_09647 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318891|ref|ZP_03600185.1| hypothetical protein BsubsJ_09566 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323164|ref|ZP_03604458.1| hypothetical protein BsubsS_09682 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3913040|sp|P94494|ALR2_BACSU RecName: Full=Alanine racemase 2
 gi|1750128|gb|AAB41097.1| YncD [Bacillus subtilis]
 gi|2634148|emb|CAB13648.1| alanine racemase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 394

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 181/383 (47%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L A+K N  ++   +   ++  AVVK N YG G  ++A      G  +  V SVEE
Sbjct: 10  IEVNLDAVKKNLRAIRRHIPHKSKIMAVVKANGYGHGSIEVARHALEHGASELAVASVEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PY 124
           G+ LR     A I VL        K     N+      V  +   ++++    S      
Sbjct: 70  GIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASANRLAI 129

Query: 125 ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            + VDTG  RLG+ + +E L+        K  + + I +H + AD+P + +  +Q E+F 
Sbjct: 130 HINVDTGMGRLGVRTKEELLEVVKALKASKFLRWTGIFTHFSTADEPDTTLTKLQHEKFI 189

Query: 184 TLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH--PMQT 234
           + +S  K  GIE     + +++  +  P +   + R GI LYG   +  I + +   ++ 
Sbjct: 190 SFLSFLKKQGIELPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLNLVKLEP 249

Query: 235 VVTAEARIILIRKALAGE--LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            ++ +ARI  + K +  E   VSYG       + +IA   IGYADGY   LS        
Sbjct: 250 ALSLKARIAYV-KTMRTEPRTVSYGATYIAEPNEVIATLPIGYADGYSRALS-------- 300

Query: 293 SVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDV 346
                 +GF+  +G  VP+ G++TMDM M  + ++   + GD + I+    G +I +D+V
Sbjct: 301 -----NRGFVLHRGKRVPVAGRVTMDMIMVSLGENGEGKQGDEVVIYGKQKGAEISVDEV 355

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T NY+++  +  R  +FY
Sbjct: 356 AEMLNTINYEVVSTLSRRIPRFY 378


>gi|291484362|dbj|BAI85437.1| hypothetical protein BSNT_02911 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 395

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 181/383 (47%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L A+K N  ++   +   ++  AVVK N YG G  ++A      G  +  V SVEE
Sbjct: 11  IEVNLDAVKKNLRAIRRHIPHKSKIMAVVKANGYGHGSIEVARHALEHGASELAVASVEE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PY 124
           G+ LR     A I VL        K     N+      V  +   ++++    S      
Sbjct: 71  GIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASANRLAI 130

Query: 125 ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            + VDTG  RLG+ + +E L+        K  + + I +H + AD+P + +  +Q E+F 
Sbjct: 131 HINVDTGMGRLGVRTKEELLEVVKALKASKFLRWTGIFTHFSTADEPDTTLTKLQHEKFI 190

Query: 184 TLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH--PMQT 234
           + +S  K  GIE     + +++  +  P +   + R GI LYG   +  I + +   ++ 
Sbjct: 191 SFLSFLKKQGIELPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLNLVKLEP 250

Query: 235 VVTAEARIILIRKALAGE--LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            ++ +ARI  + K +  E   VSYG       + +IA   IGYADGY   LS        
Sbjct: 251 ALSLKARIAYV-KTMRTEPRTVSYGATYVAEPNEVIATLPIGYADGYSRALS-------- 301

Query: 293 SVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDV 346
                 +GF+  +G  VP+ G++TMDM M  + ++   + GD + I+    G +I +D+V
Sbjct: 302 -----NRGFVLHRGKRVPVAGRVTMDMIMVSLGENGEGKQGDEVVIYGKQKGAEISVDEV 356

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T NY+++  +  R  +FY
Sbjct: 357 AEMLNTINYEVVSTLSRRIPRFY 379


>gi|225076292|ref|ZP_03719491.1| hypothetical protein NEIFLAOT_01333 [Neisseria flavescens
           NRL30031/H210]
 gi|224952416|gb|EEG33625.1| hypothetical protein NEIFLAOT_01333 [Neisseria flavescens
           NRL30031/H210]
          Length = 352

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 177/377 (46%), Gaps = 47/377 (12%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           L  +I L  L+ N+  +  L GN +  AV+K +AYG G  + A AL  A + D F V +V
Sbjct: 4   LNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHAL--ADIADGFAVATV 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +EGV+LR    +  I +L G+    E    D  +L P I S  QL  +       V H +
Sbjct: 61  DEGVELRQNGIKNPIVLLEGVFDAAEYADVDRYDLWPAIGSQWQLEAF-------VHHEW 113

Query: 125 A------LQVDTGFNRLGLSLQEALDFTHN-----SFNKKLGQLSLII--SHLACADDPS 171
                  L++D+G +R G        F HN     +  K+   +  I+  SH ACAD+P 
Sbjct: 114 QRPTTVWLKMDSGMHRAGF-------FPHNYAAAYTALKQSESVENIVKFSHFACADEPE 166

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           + +  +QLE F       +G E SLA+S+ IL  P       R G++LYG +        
Sbjct: 167 NGMTEMQLEAFDLACEGLEG-EESLANSAAILNVPEARRNWGRAGLALYGISPFGGVDER 225

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+   +R+   R       + YG     ++ + + + A GYADGYP       S +S
Sbjct: 226 LKPVMRLTSRVFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----STNS 281

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
           P         + G    I+G+++MDM   ++  S    +G  ++++G  I +++V+  + 
Sbjct: 282 PVA-------VDGKRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVSEVAS 333

Query: 352 TTNYDLLVRIGTRYAKF 368
              Y++L  I  + AKF
Sbjct: 334 MIPYEILCNI--KRAKF 348


>gi|52000508|dbj|BAD44772.1| alanine racemase [Streptomyces lavendulae subsp. lavendulae]
          Length = 378

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 169/377 (44%), Gaps = 29/377 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A++ N  ++ A +  +   AVVK NAYG G    A A   AG       + EE +
Sbjct: 11  EIDLDAVRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEAL 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQV 128
           +LR    Q RI        G  +   +T++   +S +  L    +   + G +    L+ 
Sbjct: 71  ELRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKA 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G    +  +    +   +     Q++ + SH ACAD+P      +QL+ FR +
Sbjct: 131 DTGLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDM 190

Query: 186 ISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVV 236
           +++   +G++     +A+S   L  P  HF L R G+++YG +       P Q      +
Sbjct: 191 LAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSPELGTPAQLGLRPAM 250

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  A + L++   AG  VSYG       ++ +A+   GYADG P   SG           
Sbjct: 251 TLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGR---------- 300

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
            G   + G +    G+I MD  + D+ + L+ E GD   I G     +   +D A A+ T
Sbjct: 301 -GPVLVAGKIRRAAGRIAMDQFVVDLGEDLA-EAGDEAVILGDAERGEPTAEDWAQAAHT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y+++ RIG R  + Y
Sbjct: 359 IAYEIVTRIGGRVPRVY 375


>gi|42526605|ref|NP_971703.1| alanine racemase [Treponema denticola ATCC 35405]
 gi|81831436|sp|Q73NQ7|ALR_TREDE RecName: Full=Alanine racemase
 gi|41816798|gb|AAS11584.1| alanine racemase [Treponema denticola ATCC 35405]
          Length = 379

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 162/374 (43%), Gaps = 54/374 (14%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL-- 83
           L+ N +    VK +AYG G  ++A A   AGV    V S++E V+LR     A I  L  
Sbjct: 24  LNKNVKICLPVKADAYGHGAVRVAVAAIRAGVSYLAVASIQEAVELREAGIVAPIISLSL 83

Query: 84  -----------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGF 132
                      Y I P    ++ D   I  ++      F  KL      H   L++DTG 
Sbjct: 84  PVLEEIPELLKYDIEP----LVIDEEFINDLNR-----FAKKLNKKAWVH---LKIDTGM 131

Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLERFRTLISHY 189
            R+G S  EA+         +  +L  + +H A +   D+ +      Q+  F+  I   
Sbjct: 132 RRIGCSPMEAVKLAVQIDRAENLELKGVCTHFAVSDSTDEKNIKFTKKQISVFKDSIKEI 191

Query: 190 K--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARI 242
           K  GI   L   A+S  +L  P   F + RPGI +YG   +  +N    ++ V+    ++
Sbjct: 192 KKAGINPGLIHAANSGSVLQYPEAQFDMVRPGILVYGYAPSPSLNSLIDLKPVMELVTQV 251

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +LI+K      VSY       +++ +A   IGYADG   +LSGL       V +G   F 
Sbjct: 252 VLIKKIEKDTSVSYDRCWTAEKETFVATLPIGYADGLMRSLSGL------KVRIGKDFF- 304

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK-------LDDVALASGTTNY 355
                PI+G+I MD  M DI  S  ++  D + IFGP  K         D+A  +GT  Y
Sbjct: 305 -----PIIGRICMDQCMIDIGASPWVQRWDEVCIFGPVSKEHPKNNTAQDLAKIAGTIPY 359

Query: 356 DLLVRIGTRYAKFY 369
           +L   I  R  + +
Sbjct: 360 ELTCDINKRVPRIF 373


>gi|255536698|ref|YP_003097069.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342894|gb|ACU09007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 813

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 182/375 (48%), Gaps = 31/375 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   +L     +  A+VK  +YGLG  +IA  L +  +    V   +E
Sbjct: 453 LEVNLNAVLHNINVHKSLLKPKTKMMAMVKAYSYGLGGYEIAEFLQHHHIDYLGVAYADE 512

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLT-FYSKLMSCGVS--H 122
           G  LR       I V+   +P Q     I + +L P I S   L  F  +L+  G    +
Sbjct: 513 GADLRKNGISVPIMVM---NPEQHSYDSIIEHHLEPEIYSFRVLDLFNQQLIRKGADKDY 569

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLER 181
           P  ++++TG NRLG   ++ +D       K   +++ + SHL+ AD    H  ++ Q+E+
Sbjct: 570 PIHIKLETGMNRLGFR-EDEIDELAARLAKMDVKVASVFSHLSTADSEEEHNYTMHQIEK 628

Query: 182 FRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
           F+++ +       Y+ I   L +SSGI    +Y F++ R GI + G T      + ++ V
Sbjct: 629 FQSISTRLAEKLKYEPIRHIL-NSSGIANYADYQFEMVRIGIGMVGITSNEQIKNQLRNV 687

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-SGLDSEHSPSV 294
           V+ ++ I  I +  AG+ V Y  + K T+ + IA   +GYADG P  + +G+        
Sbjct: 688 VSFKSVISQISEINAGDSVGYDRKYKATKRTRIATIPVGYADGVPRMIGNGI-------- 739

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              G   I G + PI+G I MDM M ++ DS + E GD + IF     L + +    T  
Sbjct: 740 ---GHVSISGNLYPIVGNICMDMMMVEVGDSSAKE-GDEVIIFNSKPSLAEFSDYCKTIP 795

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  I  R  + Y
Sbjct: 796 YEVLTSISRRVKRVY 810


>gi|167824787|ref|ZP_02456258.1| alanine racemase [Burkholderia pseudomallei 9]
 gi|226198963|ref|ZP_03794526.1| alanine racemase [Burkholderia pseudomallei Pakistan 9]
 gi|225929063|gb|EEH25087.1| alanine racemase [Burkholderia pseudomallei Pakistan 9]
          Length = 356

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 164/364 (45%), Gaps = 32/364 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   +  ++  A+VK NAYG G  ++ P L   G   F +  ++E VK
Sbjct: 9   IHTAALANNLSVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLDLDEAVK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ-- 127
           LR       I +L G     +  + D  +L   + +  Q+     L +  +S P  +Q  
Sbjct: 67  LRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRM---LETARLSKPVNVQLK 123

Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++G NRLG + ++    +        +GQ++L+ +H + AD           E+  T  
Sbjct: 124 MNSGMNRLGYTPEKYRAAWERARACPGIGQITLM-THFSDADGERGVA-----EQMATFE 177

Query: 187 SHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEA 240
              +GI    S A+S+ +L  P  HF   RPGI LYG +     +      ++  +T  +
Sbjct: 178 RGAQGIAGARSFANSAAVLWHPPAHFDWVRPGIMLYGASPSGRAADIADRGLKPTMTLAS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I ++    G+ V YG          I V A GYADGYP     +  E +P V      
Sbjct: 238 ELIAVQTLAKGQAVGYGSMFVAEDTMRIGVVACGYADGYPR----IAPEGTPVV------ 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA    T  Y+L+  
Sbjct: 288 -VDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMCA 346

Query: 361 IGTR 364
           +  R
Sbjct: 347 VAPR 350


>gi|217967880|ref|YP_002353386.1| alanine racemase [Dictyoglomus turgidum DSM 6724]
 gi|217336979|gb|ACK42772.1| alanine racemase [Dictyoglomus turgidum DSM 6724]
          Length = 378

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 168/369 (45%), Gaps = 38/369 (10%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           +I+L+ L +N   +   + G     AVVK +AYG G + I+  L   A +  F V  ++E
Sbjct: 9   EINLSFLLDNLKVIKEKVGGKVDVIAVVKADAYGHGAKVISLFLQKYANINTFAVAHIDE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ LR      +I VL           F+  L PVIS +    F  +L     +    L+
Sbjct: 69  GIFLRKIGVNKKILVLSPQLKSSIPYYFEYELTPVISDI---EFLDELGKYSNNKDKKLK 125

Query: 128 V----DTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           V    DTG  R G      +E L       N  L  +S   SHL+  ++     N  Q +
Sbjct: 126 VHLIFDTGMGREGFLPSESEEILKLLRRYPNLILEGIS---SHLSNPENKKDPYNIFQKK 182

Query: 181 RFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
            F  + + +K  +     +++ GI   P +HF   RPGISLYG  DK+     ++ V+  
Sbjct: 183 LFYDIYNQFKDEDLVFHFSNTGGIFNFPEFHFNAVRPGISLYGYGDKL-----LKPVMEI 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +ARI L+++   G  V YG      + + IA+  +GYADGY   LS             G
Sbjct: 238 KARITLVKELPEGWGVGYGHTFMTEKSTKIAIVPLGYADGYRRDLSN-----------KG 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +  + G    I+G+++MD    DITD   ++ GD + + G +    +   ++A+ S T  
Sbjct: 287 RVIVNGEYCKIIGRVSMDQFTIDITDK-EVKRGDLVTVMGRENEKMVDAQELAILSNTIP 345

Query: 355 YDLLVRIGT 363
           Y++L   G+
Sbjct: 346 YEILTGFGS 354


>gi|150017611|ref|YP_001309865.1| alanine racemase [Clostridium beijerinckii NCIMB 8052]
 gi|149904076|gb|ABR34909.1| alanine racemase [Clostridium beijerinckii NCIMB 8052]
          Length = 376

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 182/389 (46%), Gaps = 43/389 (11%)

Query: 5   EFLRL--KIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           E+ R   KIDL A+ +N + +   +  N +  A++K + YG G  ++   L  + V  + 
Sbjct: 3   EYFRTYAKIDLEAILHNINEAKKRIERNVKIMAIIKADGYGHGAAELGDFL-KSEVDYYG 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
           V ++EE ++LR    +  I +L    P Q   +   N+   + +       SK  + C  
Sbjct: 62  VATLEEALELRKSGIELPILILGYTSPSQYIEVVKNNITQTVYNTEMAKEMSKAGAICKK 121

Query: 121 SHPYALQVDTGFNRLGL--------SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                + +DTG  R+G          +QE L F++         +  + +H A AD+   
Sbjct: 122 EAKVHIALDTGMTRIGFDANEDGIAEVQEILTFSNLV-------VEGLFTHFATADEADK 174

Query: 173 HVNSVQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYG--GTDK 225
             + +Q+ ++   ++  +  + +     + +S+GI+   ++ F + R GI  YG   +++
Sbjct: 175 SYSKLQISKYDKFVALLEERDINIPIKHMCNSAGIMEFDHHRFDMVRCGIITYGLYPSEE 234

Query: 226 INKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
           +NK+   ++  +  +  +I +    AG  VSYG       ++ IA  ++GYADGYP  LS
Sbjct: 235 VNKNAITLKPALQWKTHVINVNIVDAGHGVSYGKTYITKNETKIATLSVGYADGYPRALS 294

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                        G+  I G   PI+G+I MD  M D+T   ++++ D + + G D    
Sbjct: 295 S-----------KGRVLIHGKYAPIIGRICMDQMMVDVTHIDNVKIEDEVTLVGKDGENI 343

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I ++++A  +G+ NY+ +  IG R  + Y
Sbjct: 344 IYVEELANMAGSFNYEFVCGIGKRVQRLY 372


>gi|134094965|ref|YP_001100040.1| alanine racemase 2, PLP-binding, catabolic [Herminiimonas
           arsenicoxydans]
 gi|133738868|emb|CAL61915.1| alanine racemase, catabolic [Herminiimonas arsenicoxydans]
          Length = 348

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 161/354 (45%), Gaps = 20/354 (5%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75
           +++N       + ++R  AVVK NAYG G E+       A      +  V+   +LR   
Sbjct: 1   MRHNLRVAKNCAPHSRILAVVKANAYGHGLERGMRGFAEA--DGLGLIEVDNAARLRQLG 58

Query: 76  PQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNR 134
            Q RI +L G     + + I    +  V+  V QL    +  S        L++++G NR
Sbjct: 59  WQKRILLLEGFFDADDLQTIAVHQIDTVVHCVEQLQMLEQ-ASLNAKLDVHLKINSGMNR 117

Query: 135 LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLERFRTLISHYKGI 192
           LG       D           +    I+H A A++ ++     S QL+RF+T      G 
Sbjct: 118 LGFMPAVCRDIYQRLRAIPAVRNISFITHFANAENAANANLPLSEQLQRFQTATQGLPG- 176

Query: 193 EASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALA 250
           +  L++S+  L+ P       RPG+ LYGGT  D    +  +Q  +T  + II I+   A
Sbjct: 177 DRCLSNSAADLMHPECAADWVRPGVMLYGGTPADTSAAAFGLQPAMTLSSEIIGIQHIAA 236

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           G+ V YG     +    I V A GYADGYP         H+PS   G    + G    ++
Sbjct: 237 GDAVGYGSSFVASGPMTIGVVACGYADGYP--------RHAPS---GTPVIVDGVRTQMV 285

Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           G+++MDM   D+T   +  VG  + ++G  + +D+VA A+GT  Y+L+  I  R
Sbjct: 286 GRVSMDMITVDLTPVATAGVGSPVILWGQGLPIDEVANAAGTVGYELMCAIAPR 339


>gi|225012399|ref|ZP_03702835.1| alanine racemase [Flavobacteria bacterium MS024-2A]
 gi|225003376|gb|EEG41350.1| alanine racemase [Flavobacteria bacterium MS024-2A]
          Length = 362

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 168/371 (45%), Gaps = 28/371 (7%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L + L+ + +N++ +   ++   +   VVK NAYG      A  L   GV    V   EE
Sbjct: 4   LTLSLSNIDHNYNCIREQINATTQIIGVVKANAYGSSSIHFASRLVELGVDYLAVAYTEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSK-LMSCGVSH-P 123
           G +LR    +  I V Y   P  + +  + D  L P + +   L  + K L+   +SH P
Sbjct: 64  GQQLRSQGVKIPIMVFY---PQLDALDTLLDACLEPCLYNETILEGFKKILLEKKISHYP 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQLER 181
             ++ +TG NRLG +  ++ D+          QL  + SHLA   A  PS+   S Q+E 
Sbjct: 121 VHIKYNTGLNRLGFTPDQS-DWVLEQMKNNCFQLESVYSHLAASEAKRPSALCKS-QIEL 178

Query: 182 FRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F  L   +  +        L +SSG+   P + + + R GI+L+G  +  +    ++ + 
Sbjct: 179 FEILKIKHSSVSNQPPKFHLLNSSGVFNYPEHQYDMVRCGIALHGFANHPDWDAHLKPIC 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             E+ I  I +   G  V Y    +  +++ IA   +G+ADG           H  SV +
Sbjct: 239 VLESSITQIHQVKKGNFVGYDHGWQAPQNTQIATLPLGHADGIGRHF----GHHKGSVMI 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
            GK        PI+G + MD+ M D+T S+  E GD ++ FG        AL   + +Y+
Sbjct: 295 NGK------KAPIVGNVCMDLLMVDVT-SIDCEEGDKVKFFGELNTASTFALQGNSISYE 347

Query: 357 LLVRIGTRYAK 367
           L+  +G+R  +
Sbjct: 348 LITGLGSRIKR 358


>gi|325979040|ref|YP_004288756.1| alanine racemase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|325178968|emb|CBZ49012.1| Alanine racemase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 368

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 181/375 (48%), Gaps = 35/375 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N  ++ A +  + +  AVVK NAYG G   +A A+++  V  F V++++E +
Sbjct: 13  IDLDAICQNIDAVKANIPQDKKAFAVVKANAYGHGATNVAQAIHHL-VDGFCVSNIDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR    +  I +L  I P +  +  D ++   ++S   L   ++           L+VD
Sbjct: 72  ELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGISLAGLDVHLKVD 131

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G+ SL EA +   N   K    ++ I +H A AD+      + QLE F  L+++
Sbjct: 132 SGMGRIGVRSLDEAENVIAN-LKKSGANVAGIFTHFATADEADDTKFNEQLEFFTNLVNN 190

Query: 189 YKGIEASL-ASSSGILLGPNYH----FQLTRPGISLYG----GTDKINKSHPMQTVVTAE 239
                A + AS+S   +   +H    F L R GI +YG    GT+ ++  +P++  ++ E
Sbjct: 191 LSDKPAIVHASNSATSI---WHSETIFNLVRLGIVMYGLNPSGTE-LDLPYPLKPALSLE 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ ++   AG  V YG      ++  IA   IGYADG+   L G       SV + G+
Sbjct: 247 SSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGF------SVLVNGE 300

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
                    I+G+++MD     + + L I  G  + + G +    I   D+A   GT NY
Sbjct: 301 ------FCEIVGRVSMDQITIRLPEKLPI--GTKVTLIGQEGSKVISATDLAQKRGTINY 352

Query: 356 DLLVRIGTRYAKFYT 370
           ++L  +  R  + Y+
Sbjct: 353 EVLCLLSDRIPRVYS 367


>gi|25027149|ref|NP_737203.1| alanine racemase [Corynebacterium efficiens YS-314]
 gi|259506716|ref|ZP_05749618.1| D-alanine racemase [Corynebacterium efficiens YS-314]
 gi|81846897|sp|Q8FS13|ALR_COREF RecName: Full=Alanine racemase
 gi|23492430|dbj|BAC17403.1| alanine racemase [Corynebacterium efficiens YS-314]
 gi|259165699|gb|EEW50253.1| D-alanine racemase [Corynebacterium efficiens YS-314]
          Length = 367

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 165/385 (42%), Gaps = 44/385 (11%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L  +IDL A+ +N   +    G A+  AVVK + Y  G +++AP +   G   F V ++
Sbjct: 3   LLTTRIDLDAIAHNTRLLKNRVGAAKLMAVVKADGYNHGMDRVAPVMAANGADAFGVATI 62

Query: 66  EEGVKLR-----------LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
            E + LR           +++P+        +  G +  +       V+   P  +   +
Sbjct: 63  AEALALRATGITTPILCWIWSPEQDWAA--AVEAGIDLAVISPRHARVLVDAPPTSRAIR 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSS 172
           +         +++VDT  +R G+  Q+  D    +  +  G + +  + +HL+CAD+P +
Sbjct: 121 V---------SVKVDTALHRSGVDEQD-WDAVF-TLLRDCGHIEVTGLFTHLSCADEPGN 169

Query: 173 HVNSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q E FR  I   + +     E  L +S   L  P+ H  + RPG++LYG      
Sbjct: 170 PETDHQAETFRRAIDRARALGLEVPENHLCNSPATLTRPDLHMDMVRPGVALYGLEPIPG 229

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             H ++  +T    I +++    GE  SYG   +   D  +AV   GYADG P       
Sbjct: 230 LDHGLRPAMTWAGAITVVKPIRKGEGTSYGLTWRAEADGFVAVVPAGYADGVPRAAQDHL 289

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIF-GPDIKLDD 345
             H           + G+  P +G++ MD  +  + D+   +  GD   IF G  +   +
Sbjct: 290 RVH-----------VNGHDYPQVGRVCMDQFVIFLGDNPHGVTAGDEAVIFGGTGMSATE 338

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +A A  T NY+++ R   R  + YT
Sbjct: 339 LADALATINYEVICRPTGRTVRDYT 363


>gi|300214211|gb|ADJ78627.1| Alanine racemase [Lactobacillus salivarius CECT 5713]
          Length = 371

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 173/380 (45%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  I L A+K+N  + ++ L  +    AVVK NAYG G   +A A   AG   F V  ++
Sbjct: 10  RAIISLEAIKHNVATQISKLKDSQSLFAVVKANAYGHGMIPVAKAAKEAGANGFCVAIID 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLM-SCGVSHPY 124
           EG+ LR    +  I +L G++P  E +    + + V + ++  LT   KL+     S   
Sbjct: 70  EGIALRESGIKDPILIL-GVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEKQSLKI 128

Query: 125 ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178
            L +DTG  R+G      L+EA+DF      K   QL    + +H + AD         Q
Sbjct: 129 HLALDTGMGRIGFRNTEDLKEAVDF----IEKHSDQLKCEGVFTHFSTADSKDPAYFEKQ 184

Query: 179 LERFRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
            ++F  L+   K     +  A+S+  L  PN+   L R GIS+YG     D I+++  ++
Sbjct: 185 SQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDVIDETWNLE 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ ++ +++  AG  + YG     ++   I    IGYADG+   + G        
Sbjct: 245 PALSLESELVAVKEVEAGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                K  I G    I+G++ MD  M  +      ++G  + + G +    I   DVA  
Sbjct: 298 -----KVLIDGQYCEIVGRVCMDQFMVRLPKKY--DLGTKVTLIGENNGKVITAQDVANY 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T +Y+++  I  R  + Y
Sbjct: 351 ADTIHYEIMCNITERVPRIY 370


>gi|184154687|ref|YP_001843027.1| alanine racemase [Lactobacillus fermentum IFO 3956]
 gi|227514327|ref|ZP_03944376.1| alanine racemase [Lactobacillus fermentum ATCC 14931]
 gi|226711050|sp|B2GA65|ALR_LACF3 RecName: Full=Alanine racemase
 gi|183226031|dbj|BAG26547.1| alanine racemase [Lactobacillus fermentum IFO 3956]
 gi|227087299|gb|EEI22611.1| alanine racemase [Lactobacillus fermentum ATCC 14931]
 gi|299782815|gb|ADJ40813.1| Alanine racemase [Lactobacillus fermentum CECT 5716]
          Length = 373

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 160/376 (42%), Gaps = 30/376 (7%)

Query: 9   LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL AL  N       L+  +R  AVVK NAYG G   +A AL  AGV+ F V  ++E
Sbjct: 11  LVVDLKALGANVQRQREQLAPGSRILAVVKANAYGNGMVPVASALARAGVEGFCVALLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLM-SCGVSHPYA 125
            ++LR    Q  + VL GI P +   +     I + + S+  L  Y +L    G+  P  
Sbjct: 71  AIELRDSGIQELVLVL-GITPVEYAPLAAAQGISLTVGSLEWLKNYQRLAKEEGIKQPLK 129

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182
             L +DTG  R+G +  E              +   I +H A AD+  +     Q  RF 
Sbjct: 130 VHLALDTGMGRIGFTTPEDFKEALQLVAAPCFEFEGIFTHFATADEEDATYFERQRARFD 189

Query: 183 --RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
               +++          S++G+    +      R GIS+YG       I +S P++ V +
Sbjct: 190 DFMAVVTKRPPFVHVANSATGLWHQKSIVANTIRMGISMYGANPSGVGIKESFPLEPVTS 249

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
                  +++  AGE VSYG       D  +A   +GYADGYP  + G            
Sbjct: 250 LVTHATYVKQLKAGESVSYGATYTAKEDEWVATLPVGYADGYPRRMQGFYV--------- 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    +LG++ MD  M  +       VG    + G     +I + DVA  + T 
Sbjct: 301 ---LVDGQRCEVLGRVCMDQMMVRLPKEYP--VGTEAVLMGRSLDQEITVTDVAEYAHTI 355

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +G R  + Y
Sbjct: 356 NYEILTGMGARLHRRY 371


>gi|302334971|ref|YP_003800178.1| alanine racemase [Olsenella uli DSM 7084]
 gi|301318811|gb|ADK67298.1| alanine racemase [Olsenella uli DSM 7084]
          Length = 386

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 183/395 (46%), Gaps = 45/395 (11%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N +  +++DL A++ N  +  AL     +    VK +AYG G  + A A+ ++G   F V
Sbjct: 9   NRWAWVEVDLNAIRKNTRAFKALLEPRTQMMCAVKADAYGHGAVECAKAMASSGASQFAV 68

Query: 63  TSVEEGVKLRLYTPQARIFV-----LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
            +V+EGV+LR       I +     L GI    + + FD  +  V +S   L +  + +S
Sbjct: 69  ATVDEGVELRRGGVAQPILMLNECPLEGI---DDLLAFDV-MPSVYTSGFALAYGERAVS 124

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNS 176
            G    Y L +DTG +R+G+  ++ ++F     F++ L + +   +H A AD        
Sbjct: 125 LGKVGRYHLAIDTGMSRIGVLPEDVVEFRRMIDFHRGL-ECAGSFTHFATADAIGDWDFR 183

Query: 177 VQLERFRTLISHYK--GIEASLA---SSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            Q  RF   +S  +  G+E  L    ++ G +L P  HF + R GI LYG   ++     
Sbjct: 184 QQSLRFSDAVSALEGAGLEVGLVHCDNTPGTVLHPENHFDMCRVGIGLYGLQPSETTAPR 243

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLS-GLD 287
             ++  ++  AR+  +     GE V YG   ++ + ++ IA   +GYADG   +LS  +D
Sbjct: 244 IALEPAMSVRARVTRVVNPAVGEGVGYGFTYRVPKPNIQIATVPVGYADGLSRSLSNNMD 303

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF--DITD------SLSIEVGDYIQIFGP 339
                         ++G     +G+I MD  MF  D+ D      + ++E GD + + G 
Sbjct: 304 V------------LVRGMRARQVGRICMDQFMFAVDVNDIRAYHPATAVERGDVVTLIGR 351

Query: 340 D----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           D    I  D++A    T NY+++     R  + +T
Sbjct: 352 DGDDEISADEMADRRDTINYEVVCNFSQRLDRIFT 386


>gi|160939251|ref|ZP_02086602.1| hypothetical protein CLOBOL_04145 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438214|gb|EDP15974.1| hypothetical protein CLOBOL_04145 [Clostridium bolteae ATCC
           BAA-613]
          Length = 396

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 185/386 (47%), Gaps = 30/386 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+S   +   IDL A+++N  +M ++L  +A    VVK + YG G   +A A+ +  V+ 
Sbjct: 1   MNSYSRVYASIDLDAVESNMRAMKDSLPPSASMIGVVKTDGYGHGAVPVARAI-DPYVKG 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSC 118
           + V +++E + LR +  Q  I VL   H  + + +   ++ P +    +    S+  +  
Sbjct: 60  YAVATIDEAIILRRHGIQKMILVLGVTHESRFEDLVRYDIRPAMFRYEEAGKLSETAVKN 119

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSV 177
           G      L VDTG +R+G++  EA        ++  G  +  + +H A AD+        
Sbjct: 120 GARANIHLAVDTGMSRIGMTPDEASADEAARISRLPGICIEGMFTHFARADEADKAFYEA 179

Query: 178 QLERFRTLISHY--KGIEASL---ASSSGILLGPNYH-FQLTRPGISLYG--GTDKINKS 229
           Q +++R        +G++  +   ++S+GI+ G + +   + R GIS+YG   +D++ + 
Sbjct: 180 QYKKYREFCEMLCSRGVDIPIRHCSNSAGIVEGLDSNGLDMVRAGISIYGLYPSDEVARD 239

Query: 230 HPMQTVVTAEAR--IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             ++ V   E +  I  I+    G  VSYGG     R   +A   +GY DGY  +LS   
Sbjct: 240 R-VKLVPAMELKSFITYIKTIGPGTAVSYGGTFVADRPMRVATIPVGYGDGYLRSLSN-- 296

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G   I+G    ILG+I MD  M D+TD    E GD + + G D    I +
Sbjct: 297 ---------KGAVLIRGKRAEILGRICMDQFMADVTDIPEAEEGDQVTLIGRDGEECITV 347

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +++A  SG  +Y+++ +IG R  + Y
Sbjct: 348 EELAALSGGFHYEIICQIGKRVPRVY 373


>gi|325675498|ref|ZP_08155182.1| D-alanine racemase [Rhodococcus equi ATCC 33707]
 gi|325553469|gb|EGD23147.1| D-alanine racemase [Rhodococcus equi ATCC 33707]
          Length = 414

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 181/388 (46%), Gaps = 52/388 (13%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+ +N   +   +G A   AVVK +AY  G   +A A   AG  +  VT++ EG++
Sbjct: 42  IDLDAVAHNIGILREHAGGATVMAVVKADAYNHGAVPVARAALAAGAGELGVTTLAEGLE 101

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK---------LMSC 118
           L+   +  P     VL  +H        D++  P +++  +L   S              
Sbjct: 102 LKNAGITAP-----VLSWLH------TADSDFAPAVAAGVELGLSSPRHLAAVAAAARQV 150

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSL--IISHLACADDPSSHVN 175
           G +    ++VDTG NR G+S +E  DF  + +  +  G +    + SHLA AD+P   V 
Sbjct: 151 GTAATVTVKVDTGLNRNGVSREEWTDFLKDLARVEAEGAVRFKGVFSHLAHADEPHHPVI 210

Query: 176 SVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KS 229
             Q ERF + +   + I      A L++S+  L  P+  F + RPGI++YG +   +  +
Sbjct: 211 DDQRERFTSALEDAERIGLVPEAAHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPDLGT 270

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T  +R+ L++K  AGE VSYG       D+ +A+  +GYADG P  L G    
Sbjct: 271 FGLRPVMTFRSRVALVKKVAAGEGVSYGHTWVAPHDTTVALLPVGYADGIPRALGGRF-- 328

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIKLD---- 344
               V+LG          P +G++ MD  + D+  D   +  GD    FG D   D    
Sbjct: 329 ---EVWLGDD------RRPGIGRVCMDQVVVDLGPDGAGVREGDTAVFFG-DGDGDRGVP 378

Query: 345 ---DVALASGTTNYDLLVRIGTRYAKFY 369
              D A A  T +Y+++  +  R  + Y
Sbjct: 379 HAQDWADALDTIHYEVVTSVRGRTIRTY 406


>gi|116671442|ref|YP_832375.1| alanine racemase [Arthrobacter sp. FB24]
 gi|116611551|gb|ABK04275.1| alanine racemase [Arthrobacter sp. FB24]
          Length = 417

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 176/401 (43%), Gaps = 76/401 (18%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+++N   + A++  A+  AVVK +AYG G   +A A   AG +   V  + E + 
Sbjct: 38  IDLDAIRHNVRHLAAVASPAQVMAVVKADAYGHGAVPVARAALEAGARWLGVAHISEALA 97

Query: 71  LR-----------LYTPQARI--FVLYGIHPGQ-----EKIIFDTNLIPVISSVPQLTFY 112
           LR           L+TP +     V  GI  G      EKI+              L   
Sbjct: 98  LRAAGIEAPLLAWLHTPDSNFGAAVAAGIDIGCSGWELEKIV--------------LAAR 143

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQ-------EALDFTHNSFNKKLGQLSLIISHLA 165
            +     V     L+VDTG  R G +L+       EA+++      + +G    I SHLA
Sbjct: 144 EQERPARVH----LKVDTGLGRNGATLEAWDSLVGEAMEYQDEGLLRVVG----IFSHLA 195

Query: 166 CADDPSSHVNSVQLERFRTL--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
            AD+P      +QL+ FR +  I+   G++     LA++   L  P+ HF L R G+ +Y
Sbjct: 196 VADEPHRPETDLQLQAFREVLAIAEDAGVDPEVRHLANTPATLSRPDTHFDLVRVGLGIY 255

Query: 221 GGTDKINKSHP---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
           G +    +S     ++  +T   ++   +   AG+ VSYG   +    S + +  +GYAD
Sbjct: 256 GLSPFEGQSPAELGLRPAMTVRTKVSHCKDVPAGQGVSYGLNYRTAGASTLGLIPLGYAD 315

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD-----ITDSLSIEVGD 332
           G             P V  GG   ++G   P++G+I MD  + D     ++   +  +G 
Sbjct: 316 GV------------PRVATGGPVRVEGRNYPVVGRIAMDQMVIDLGPRGVSSGGASVLGA 363

Query: 333 YIQIFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
              +FG         DD A A+GT NY+++ RI  R  + Y
Sbjct: 364 EAVLFGDGTDGGPTADDWARAAGTINYEIVTRISPRVPRRY 404


>gi|86739335|ref|YP_479735.1| alanine racemase [Frankia sp. CcI3]
 gi|123724238|sp|Q2JFD6|ALR_FRASC RecName: Full=Alanine racemase
 gi|86566197|gb|ABD10006.1| alanine racemase [Frankia sp. CcI3]
          Length = 384

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 169/379 (44%), Gaps = 35/379 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A++ +  ++ A +G+A T AVVK + YG G    A A    G        +EE + 
Sbjct: 20  IDLDAVRTSVTALVARAGDAATMAVVKADGYGHGMIPCARAALEGGATWLGTAFLEEALA 79

Query: 71  LRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           LR       +       PG+     I  D +L        +    +   +   +  + L+
Sbjct: 80  LRAAGFTVPVLSWLAA-PGESFAAAIAADVDLSASAGWALEEAAAAARRTGRTARVH-LK 137

Query: 128 VDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFR 183
            DTG  R G +  +  AL     +   + G + +I   SH A AD P       Q+ RFR
Sbjct: 138 ADTGLGRAGATEADWPALCDAGAALEAE-GVIEVIGVWSHFAFADAPGHPTVQGQIGRFR 196

Query: 184 TLI--SHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQT 234
             I  +   G+  S   LA+S+  L+ P  HF L RPG+S+YG +       P    ++ 
Sbjct: 197 DAIDIATKAGLHPSVRHLANSAATLVSPEAHFDLVRPGVSVYGLSPGPEIGPPAAFGLRP 256

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T      L ++  AG  VSY  +   TR++ +AV  +GYADG P +     + ++  V
Sbjct: 257 AMTLTTHAALTKRVPAGTGVSYAHRYTTTRETTLAVVPLGYADGIPRS-----ATNTAEV 311

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
             GG+         I G + MD  + D+ D   +  GD + +FGP    +   DD A A 
Sbjct: 312 LFGGR------RRRIAGTVCMDQFVLDVGDD-QVAAGDEVLLFGPGDRGEPTADDWAAAL 364

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++ R+G R  + Y
Sbjct: 365 GTINYEIVSRVGARVPRRY 383


>gi|268611540|ref|ZP_06145267.1| alanine racemase [Ruminococcus flavefaciens FD-1]
          Length = 378

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 177/389 (45%), Gaps = 52/389 (13%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           ++ L  L+ N   + +L SG+    AVVK +AYG G E I   L N  G++ F V++++E
Sbjct: 11  EVSLPQLRKNVEIIRSLNSGSTEIMAVVKADAYGHGDEHIVRCLANDCGIRYFAVSNLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
            + +R + PQ  I +L    P     I   N+I  + S    T Y++ +      P    
Sbjct: 71  AIAVRKFAPQGEILILGYTPPEYAHEISMYNIIQGVVS----TEYAEALVQNTPQPIRCH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSL--IISHLACAD--DPSSHVNSVQLE 180
           +++DTG  R+GL            +   K+ +LS+  I +H A AD  DP +   + + E
Sbjct: 127 IKIDTGMGRIGLKHDTPQQCAAEIAEMMKIDKLSVEGIYTHFAVADSDDPDNVAYTDKQE 186

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQ--------------LTRPGISLYGGTDKI 226
           +F T    Y      + ++ GI L P+ HF               L+R GI LYG    +
Sbjct: 187 KFIT--DTY-----DVLAAQGIKL-PHLHFMNSAATCYRNSERSTLSRAGIILYGLHPDV 238

Query: 227 NKSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
           +   P  ++ ++  +A I  ++    G+ +SYG   +  R+  IA   IGYADGY   LS
Sbjct: 239 SLDIPEGLEPLMELKAVISHVKTVNKGDCISYGRTFRADREMRIATVTIGYADGYSRLLS 298

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                        G+  + G    I G++ MD  M D++D    + GD + + G +    
Sbjct: 299 S-----------KGEILVHGKRCKITGRVCMDQLMIDVSDVPEAKAGDIVTLIGKEGDDR 347

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I  DD+A   GT  Y+++  I  R  + Y
Sbjct: 348 ITADDLAQIYGTIGYEVVCGISKRVPRIY 376


>gi|257456069|ref|ZP_05621272.1| alanine racemase [Treponema vincentii ATCC 35580]
 gi|257446527|gb|EEV21567.1| alanine racemase [Treponema vincentii ATCC 35580]
          Length = 375

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 171/384 (44%), Gaps = 49/384 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LK ++T +K        L    +    VK +AYG G  + A A   AGV    V SV+EG
Sbjct: 13  LKYNITQIKQT------LVPETKICLPVKADAYGHGAVRTAIAAIRAGVSYLAVASVQEG 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           ++LR     A I  L    P  E+I  I D  L P++       F ++L     +     
Sbjct: 67  IELREAGIVAPIISLS--LPILEEIDSIIDYKLEPLVIDE---EFINELNRAADAQKKTV 121

Query: 126 ---LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QL 179
              L++DTG +R+G    EA+         K  +L  + +H A AD  S    +    QL
Sbjct: 122 AVHLKIDTGMSRIGCKPSEAVKLATQIVRAKHLRLQGVATHFAVADSDSESDRAFTKNQL 181

Query: 180 ERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230
           ERF   +   +  GI   L   A+S  + L P   F + RPG+  YG     N ++    
Sbjct: 182 ERFTDAVEAIRQTGIHIPLVHAANSGAVQLLPEARFDMVRPGLLAYGYLPIRNAAYTIDV 241

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS-GLDS 288
            P+  +VT   +++LI++  AG  VSYG      +D+ IA   IGYADG    LS GL  
Sbjct: 242 KPVMELVT---QVVLIKQIRAGTCVSYGRNWTAPQDTYIATLPIGYADGLRRALSPGL-- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDD 345
                V +G + F      PI+G+I MD  M D+     ++  D + IFGP   D     
Sbjct: 297 ----KVRIGSEFF------PIVGRICMDQCMIDLGAHPWVQRWDEVCIFGPNPQDNSAQT 346

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  +GT  Y++   I  R  + +
Sbjct: 347 LADIAGTIPYEITCGIHKRVPRVF 370


>gi|324326142|gb|ADY21402.1| alanine racemase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 408

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   ++ I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEDAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|307328078|ref|ZP_07607259.1| alanine racemase [Streptomyces violaceusniger Tu 4113]
 gi|306886383|gb|EFN17388.1| alanine racemase [Streptomyces violaceusniger Tu 4113]
          Length = 384

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 162/383 (42%), Gaps = 37/383 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DL AL+ N  ++   +  A   AVVK +AYG G    A A   AG       + EE
Sbjct: 9   RAVVDLAALRANVRALRDAAPTAELMAVVKADAYGHGMIPCARAARKAGASWLGAATPEE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR      R+        G  +   + ++    S +  L    +   +CG +    L
Sbjct: 69  ALGLRAAGDTGRLMCWLWTPGGPWRQAIEADIDVSASGLWALREAVAAARACGRTARLHL 128

Query: 127 QVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +    +D    +  +   +++ + SH ACAD+P       QL  FR
Sbjct: 129 KADTGLGRSGCQPADWPALVDEARAAEAEGAIRVTGLWSHFACADEPGHPSIGAQLSVFR 188

Query: 184 TLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---- 234
            +++H +  G+      LA+S   L  P  HF L R GI+ YG    I+ S  + T    
Sbjct: 189 EMVAHAEQAGLRPEVRHLANSPATLTVPESHFDLVRTGIATYG----ISPSPELGTAADF 244

Query: 235 ----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
               V+T  A +  +++   G  VSYG +     ++ +A+  +GY DG P   SG     
Sbjct: 245 GLRPVMTLSAALASVKRVPGGHGVSYGHRYVTPGETTLALVPVGYGDGIPRHASGT---- 300

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                  G   + G    I G + MD  + D+    +   GD   +FGP    +   +D 
Sbjct: 301 -------GPVLVAGKWRTIAGTVAMDQFVVDLGGDTAAP-GDEAVLFGPGDRGEPTAEDW 352

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A G+  Y+++ RI  R  + Y
Sbjct: 353 ARAVGSIAYEIVTRISARIPRVY 375


>gi|149278412|ref|ZP_01884549.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
 gi|149230782|gb|EDM36164.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
          Length = 824

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL  N     + L    +  A+VK  +YG G  +IA  L    V    V   +E
Sbjct: 465 LEIDLNALSGNLQFYRSKLKPGVKIMAMVKAFSYGSGSFEIANVLQYHKVDYLAVAFTDE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYAL 126
           GV LR       I V+    P   + I    L P I +   L  F + L      +P  +
Sbjct: 525 GVALRKGGITMPIMVM-SPEPSAFEAIVRYKLEPEIYNTDILNKFLNFLSDTEQQYPVHI 583

Query: 127 QVDTGFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183
           ++DTG +RLG    +  D     NS  K   Q S   SHL  ++D         QL RF 
Sbjct: 584 KIDTGMHRLGFEEIDIPDLLMALNSNQKIRVQSSF--SHLVGSEDIMHDEFTRHQLSRFT 641

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
            +    +          ++++SGI   P+    + R GI +YG    I +S  +Q V   
Sbjct: 642 AMADTIREGLGYDFIRHISNTSGISRHPDAQLDMVRIGIGMYGYDGGIAQSKGLQPVAIL 701

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I  I+     E + YG +  L      A   IGYADGY       D      V   G
Sbjct: 702 KTTITQIKHIKPNETIGYGRKGILPEGGTTATVKIGYADGY-------DRRFGHGV---G 751

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           K  IKG +VP +G I MDM M D+T  L ++ GD + +F   + + D+A   GT  Y++L
Sbjct: 752 KMLIKGALVPTVGVICMDMCMLDVT-GLDVQNGDEVIVFNGQLSIADLAQQIGTIPYEIL 810

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 811 TNISQRVKRVY 821


>gi|269792742|ref|YP_003317646.1| alanine racemase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100377|gb|ACZ19364.1| alanine racemase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 380

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 152/343 (44%), Gaps = 26/343 (7%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+++ L A+++N   + + + G A+   VVK NAYGLG  ++  AL   GV  F V + +
Sbjct: 6   RMEVSLRAVRHNLDQIRSYVGGRAQVMGVVKANAYGLGARRVVEALRAQGVVRFAVATPD 65

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYA 125
           E V+LR +     + VL    P     +   ++   + S+       ++    G      
Sbjct: 66  EAVQLREWGVGEPVLVLGQCLPSAAGEMVAMDVTCAVGSLELARALSAEAERQGRQVKVH 125

Query: 126 LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++VDTG  R+G     L+ A+D      + +   +  I +H A AD+        QL RF
Sbjct: 126 IKVDTGMGRIGFLPGELEAAMD---QILSMRHLDVEGIFTHFATADEARLDHAEEQLRRF 182

Query: 183 RTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
              +     +G+   L    +S+  +  P+ H    RPGI LYG         P+   V 
Sbjct: 183 GDALDRMRCRGVRFRLRHACNSAATIRMPHGHLDAVRPGIILYGMRPSPLCPMPLNLEVP 242

Query: 238 AEAR--IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            E    +  +R+      +SYG +     +  IAV  IGY DGY   LSG          
Sbjct: 243 FEVNTAVAAVRELPPMWGISYGMRYVTRGNERIAVLPIGYRDGYARALSG---------- 292

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
              +  I+G   P++G I MD  M D+TD  S++VGD + + G
Sbjct: 293 -KAQVLIRGRRFPVVGTICMDQCMVDVTDCPSVQVGDPVVLLG 334


>gi|288906075|ref|YP_003431297.1| alanine racemase [Streptococcus gallolyticus UCN34]
 gi|288732801|emb|CBI14377.1| Putative alanine racemase [Streptococcus gallolyticus UCN34]
          Length = 368

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 181/375 (48%), Gaps = 35/375 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N  ++ A +  + +  AVVK NAYG G   +A A+++  V  F V++++E +
Sbjct: 13  IDLDAICQNIDAVKANIPQDKKAFAVVKANAYGHGATSVAQAIHHL-VDGFCVSNIDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR    +  I +L  I P +  +  D ++   ++S   L   ++           L+VD
Sbjct: 72  ELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGISLAGLDVHLKVD 131

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G+ SL EA +   N   K    ++ I +H A AD+      + QLE F  L+++
Sbjct: 132 SGMGRIGVRSLDEAENVIAN-LKKAGANVAGIFTHFATADEADDTKFNEQLEFFTNLVNN 190

Query: 189 YKGIEASL-ASSSGILLGPNYH----FQLTRPGISLYG----GTDKINKSHPMQTVVTAE 239
                A + AS+S   +   +H    F L R GI +YG    GT+ ++  +P++  ++ E
Sbjct: 191 LSDKPAIVHASNSATSI---WHSETIFNLVRLGIVMYGLNPSGTE-LDLPYPLKPALSLE 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ ++   AG  V YG      ++  IA   IGYADG+   L G       SV + G+
Sbjct: 247 SSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGF------SVLVNGE 300

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
                    I+G+++MD     + + L I  G  + + G +    I   D+A   GT NY
Sbjct: 301 ------FCEIVGRVSMDQITIRLPEKLPI--GTKVTLIGQEGSKVISATDLAQKRGTINY 352

Query: 356 DLLVRIGTRYAKFYT 370
           ++L  +  R  + Y+
Sbjct: 353 EVLCLLSDRIPRVYS 367


>gi|225572058|ref|ZP_03780922.1| hypothetical protein RUMHYD_00352 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040493|gb|EEG50739.1| hypothetical protein RUMHYD_00352 [Blautia hydrogenotrophica DSM
           10507]
          Length = 384

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 179/390 (45%), Gaps = 37/390 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M  N   ++ I L A+  N+  M+  L    +  AV+K + YG G   IA  + +   V 
Sbjct: 1   MEKNSRTKVSISLDAIAQNFEEMHRKLPKETKMMAVIKADGYGHGALAIAKTVESYEYVW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI---SSVPQLTFYSKL 115
            F   + +E  +LR       I VL       + ++    + P +   S+  +L+   + 
Sbjct: 61  GFATATAQEAGQLREAGIHKPILVLGYTFQEDDALLVREEIRPTVFQYSTAKRLS--QEA 118

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
              G +    L +DTG  R+G  +Q E++            ++  + +H A AD+     
Sbjct: 119 ARQGKTVHIHLALDTGMARIGFPVQKESVREIQKIQKLDFLEIEGLFTHFAKADEADLTY 178

Query: 175 NSVQL---ERFRTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKI 226
            + QL   E+F   +S  +G+   +   A+S+GI+  P  +  L R GI +YG   +D++
Sbjct: 179 TAEQLRQYEQFCQWLSQ-EGVTVPIRHCANSAGIMCVPRAYLDLVRAGIIMYGIYPSDEV 237

Query: 227 NKSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            +    ++  +  +A+I  ++   AG  VSYGG     +++ IA   +GYADGYP +LS 
Sbjct: 238 EREKLFLRPAMEWKAQIAYVKTVPAGCAVSYGGTYVTEKETKIATIPVGYADGYPRSLS- 296

Query: 286 LDSEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
                        KG+I   G   PILG++ MD  M D+TD   +   D + + G D   
Sbjct: 297 ------------NKGWILVHGQKAPILGRVCMDQFMVDVTDIPQVRQHDEVTLIGWDHQA 344

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            + ++++A  SG   Y+ +  IG+R  + Y
Sbjct: 345 FLSVEELARLSGRFPYEFVCDIGSRVPRVY 374


>gi|313680417|ref|YP_004058156.1| alanine racemase [Oceanithermus profundus DSM 14977]
 gi|313153132|gb|ADR36983.1| alanine racemase [Oceanithermus profundus DSM 14977]
          Length = 358

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 167/371 (45%), Gaps = 32/371 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           L+IDL AL  N   +   + +A+  AVVK +AYG G  ++A  L    GV+ F V +  E
Sbjct: 6   LEIDLGALGRNCAHLAGRAPDAQLIAVVKADAYGHGAVRVARYLRERCGVRRFAVATSGE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G +LR       + +L  +HP   +      L P + ++     ++     G      ++
Sbjct: 66  GAELRAAGIAEPVLLLGALHPDDAEGAARHGLTPTLVTLAAARAFAAARPGGRVQ---VK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN---SVQLERFRT 184
           VD+G  R+G++  E   F        L ++  I +H A AD+  +      +V LE  R 
Sbjct: 123 VDSGMGRVGVAPAELAGFMAAVEGLGL-EVEAIYTHFAVADEDEAETRRQLAVFLEAARA 181

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           L   Y       A+S+ IL G        RPG++LYG    + ++  ++ V+  +AR   
Sbjct: 182 LPRRYP---LHAANSAAILAGLGTGLDFVRPGVALYGLPPDMKEAPGLEPVLAWKARPTQ 238

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI-- 302
           +++  AG  V YG   +   +  IA    GYADG+   LS              +G++  
Sbjct: 239 VKRLPAGHGVGYGLSYRAGGEEWIATLPFGYADGFSRALS-------------NRGWVRW 285

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVALASGTTNYDLL 358
           +G   P+ G+++MD T   + + + ++  +  ++  PD+     L   A A GT +Y+L 
Sbjct: 286 RGGYAPVAGRVSMDQTTVRLPEPVGLD--EVFEVVTPDLDERTGLTGRARALGTIHYELA 343

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 344 TALSRRLPRIY 354


>gi|306832114|ref|ZP_07465268.1| alanine racemase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304425553|gb|EFM28671.1| alanine racemase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 368

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 181/375 (48%), Gaps = 35/375 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N  ++ A +  + +  AVVK NAYG G   +A A+++  V  F V++++E +
Sbjct: 13  IDLDAICQNIDAVKANIPQDKKAFAVVKANAYGHGATSVAQAIHHL-VDGFCVSNIDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR    +  I +L  I P +  +  D ++   ++S   L   ++           L+VD
Sbjct: 72  ELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGISLAGLDVHLKVD 131

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G+ SL EA +   N   K    ++ I +H A AD+      + QLE F  L+++
Sbjct: 132 SGMGRIGVRSLDEAENVIAN-LKKAGANVAGIFTHFATADEADDTKFNEQLEFFTNLVNN 190

Query: 189 YKGIEASL-ASSSGILLGPNYH----FQLTRPGISLYG----GTDKINKSHPMQTVVTAE 239
                A + AS+S   +   +H    F L R GI +YG    GT+ ++  +P++  ++ E
Sbjct: 191 LSDKPAIVHASNSATSI---WHSETIFNLVRLGIVMYGLNPSGTE-LDLPYPLKPALSLE 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ ++   AG  V YG      ++  IA   IGYADG+   L G       SV + G+
Sbjct: 247 SSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGF------SVLVNGE 300

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
                    I+G+++MD     + + L I  G  + + G +    I   D+A   GT NY
Sbjct: 301 ------FCEIVGRVSMDQITIRLPEKLPI--GTKVTLIGQEGSKAISATDLAQKRGTINY 352

Query: 356 DLLVRIGTRYAKFYT 370
           ++L  +  R  + Y+
Sbjct: 353 EVLCLLSDRIPRVYS 367


>gi|119476766|ref|ZP_01617076.1| alanine racemase 1, PLP-binding, biosynthetic [marine gamma
           proteobacterium HTCC2143]
 gi|119450022|gb|EAW31258.1| alanine racemase 1, PLP-binding, biosynthetic [marine gamma
           proteobacterium HTCC2143]
          Length = 338

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 28/348 (8%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           A+VK +AYG G  ++A  L  A      V  VEE ++LR      RI VL G     + +
Sbjct: 2   AMVKADAYGHGLIEVAATLDAA--DGLAVARVEEALELRAAGFMQRILVLAGALTLTDLL 59

Query: 94  IFDTNLIP-VISSVPQL-TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
                 I  VI S  Q+  F +  +S  V+    L++D+G +RLGLS  +   +      
Sbjct: 60  QCSRQSIDLVIHSANQVDEFLAATLSAPVN--IWLKIDSGMHRLGLSADQFQQYQQQLSR 117

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
               +  L ++H   +D  ++     Q   F   ++ +  +  SLA+S+ I+  P+ H  
Sbjct: 118 SSNSREILSMTHFGSSDADNTQQTQQQEALFEEAVAGFS-VPQSLANSAAIIKRPSSHRD 176

Query: 212 LTRPGISLYGGTDKINKSH-----PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDS 266
             RPGI LYG      +S       +QTV+T  + +I  R   AG+ V Y  +     DS
Sbjct: 177 WVRPGIMLYGANPLTAESQHLFPVNLQTVMTLSSEVIATRGVKAGDSVGYNSRWTAPSDS 236

Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
           +IA   +GY DGYP         H+ +   G    + G    ++G ++MD+   D+T   
Sbjct: 237 IIATVGVGYGDGYP--------RHARN---GTPVLVNGQRAALVGAVSMDLITIDVTHCN 285

Query: 327 SIEVGDYIQIFGP-----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++ VGD + ++G       +  ++VA  + T +Y+L   +  R  K Y
Sbjct: 286 TVSVGDEVTLWGNASTGHQLAAEEVAQWAETISYELFTSVTPRVIKTY 333


>gi|325473141|gb|EGC76337.1| alanine racemase [Treponema denticola F0402]
          Length = 379

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 162/374 (43%), Gaps = 54/374 (14%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL-- 83
           L+ N +    VK +AYG G  ++A A   AGV    V S++E V+LR     A I  L  
Sbjct: 24  LNKNVKICLPVKADAYGHGAVRVAVAAIRAGVSYLAVASIQEAVELREAGIVAPIISLSL 83

Query: 84  -----------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGF 132
                      Y I P    ++ D   I  ++      F  KL      H   L++DTG 
Sbjct: 84  PVLEEIPELLKYDIEP----LVIDEEFINDLNR-----FAKKLNKKAGVH---LKIDTGM 131

Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLERFRTLISHY 189
            R+G S  EA+         +  +L  + +H A +   D+ +      Q+  F+  I   
Sbjct: 132 RRIGCSPMEAVKLAVQIDRAENLELKGVCTHFAVSDSTDEKNIKFTKKQISVFKDSIKEI 191

Query: 190 K--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARI 242
           K  GI   L   A+S  +L  P   F + RPGI +YG   +  +N    ++ V+    ++
Sbjct: 192 KKAGINPGLIHAANSGAVLQYPEAQFDMVRPGILVYGYAPSPSLNSLIDLKPVMELVTQV 251

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +LI+K      VSY       +++ +A   IGYADG   +LSGL       V +G   F 
Sbjct: 252 VLIKKIEKDTSVSYDRCWTAEKETFVATLPIGYADGLMRSLSGL------KVRIGKDFF- 304

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK-------LDDVALASGTTNY 355
                PI+G+I MD  M DI  S  ++  D + IFGP  K         D+A  +GT  Y
Sbjct: 305 -----PIIGRICMDQCMIDIGASPWVQRWDEVCIFGPVSKEHPKNNTAQDLAKIAGTIPY 359

Query: 356 DLLVRIGTRYAKFY 369
           +L   I  R  + +
Sbjct: 360 ELTCDINKRVPRIF 373


>gi|90961338|ref|YP_535254.1| alanine racemase [Lactobacillus salivarius UCC118]
 gi|122449330|sp|Q1WV14|ALR_LACS1 RecName: Full=Alanine racemase
 gi|90820532|gb|ABD99171.1| Alanine racemase [Lactobacillus salivarius UCC118]
          Length = 371

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 171/380 (45%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  I L A+K+N  + ++ L       AVVK NAYG G   +A A   AG   F V  ++
Sbjct: 10  RAIISLEAIKHNVATQISKLKDGQSLFAVVKANAYGHGMIPVAKAAKEAGANGFCVAIID 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSH-PY 124
           EG+ LR    +  I +L G++P  E +    + + V + ++  LT   KL+         
Sbjct: 70  EGIALRESGIKDPILIL-GVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEKQRLKI 128

Query: 125 ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178
            L +DTG  R+G      L+EA+DF      K   QL    + +H + AD         Q
Sbjct: 129 HLALDTGMGRIGFRNTEDLKEAVDF----IEKHSDQLKCEGVFTHFSTADSKDPAYFEKQ 184

Query: 179 LERFRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
            ++F  L+   K     +  A+S+  L  PN+   L R GIS+YG     D I+++  ++
Sbjct: 185 SQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDMIDETWNLE 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ ++ +++  AG  + YG     ++   I    IGYADG+   + G        
Sbjct: 245 PALSLESELVAVKEVEAGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                K  I G    I+G++ MD  M  +      ++G  + + G +    I   DVA  
Sbjct: 298 -----KVLIDGQYCEIVGRVCMDQFMVRLPKKY--DLGTKVTLIGENNGKVITAQDVANY 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T +Y+++  I  R  + Y
Sbjct: 351 ADTIHYEIMCNITERVPRIY 370


>gi|227891789|ref|ZP_04009594.1| alanine racemase [Lactobacillus salivarius ATCC 11741]
 gi|227866448|gb|EEJ73869.1| alanine racemase [Lactobacillus salivarius ATCC 11741]
          Length = 371

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 172/380 (45%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  I L A+K+N  + ++ L       AVVK NAYG G   +A A   AG   F V  ++
Sbjct: 10  RAIISLEAIKHNVATQISKLKDGQSLFAVVKANAYGHGMIPVAKAAKEAGANGFCVAIID 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLM-SCGVSHPY 124
           EG+ LR    +  I +L G++P  E +    + + V + ++  LT   KL+     S   
Sbjct: 70  EGIALRESGIKDPILIL-GVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEKQSLKI 128

Query: 125 ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178
            L +DTG  R+G      L+EA+DF      K   QL    + +H + AD         Q
Sbjct: 129 HLALDTGMGRIGFRNTEDLKEAVDF----IEKHSDQLKCEGVFTHFSTADSKDPAYFEKQ 184

Query: 179 LERFRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
            ++F  L+   K     +  A+S+  L  PN+   L R GIS+YG     D I+++  ++
Sbjct: 185 SQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDVIDETWNLE 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ ++ +++  AG  + YG     ++   I    IGYADG+   + G        
Sbjct: 245 PALSLESELVAVKEVEAGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                K  I G    I+G++ MD  M  +      ++G  + + G +    I   DVA  
Sbjct: 298 -----KVLIDGQYCEIVGRVCMDQFMVRLPKKY--DLGTKVTLIGENNGKVITAQDVANY 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T +Y+++  I  R  + Y
Sbjct: 351 ADTIHYEIMCNITERVPRIY 370


>gi|320160719|ref|YP_004173943.1| alanine racemase [Anaerolinea thermophila UNI-1]
 gi|319994572|dbj|BAJ63343.1| alanine racemase [Anaerolinea thermophila UNI-1]
          Length = 370

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 32/384 (8%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           H++    L+IDL+ ++ N   +  ++G     AVVK NAYG G  + + A   AGVQ   
Sbjct: 3   HADLTTWLEIDLSVIRKNIRLLQEIAG-VPVMAVVKANAYGHGLIEASRAAVQAGVQWLG 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGV 120
           V  ++E ++L     +A   VL    P +        + + V  S     + ++  + G 
Sbjct: 62  VARIDEALELHRAGIRAHPIVLGYTPPERAGEAAQAGVRLAVYDSQVAQAYAAQAKAVGK 121

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                 + DTG  RLG S +E +++       +  Q+    +HLA ADDP       QL+
Sbjct: 122 PLYVHAKFDTGMGRLGASPEEGVEWMRWLHTLEGLQVEGAFTHLAEADDPQKPTTHWQLD 181

Query: 181 RFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP- 231
           RF  L+S   G+E++         A+S+G L  P   + L R GI++YG     +   P 
Sbjct: 182 RFDKLLS---GLESAGLRPAWVHAANSAGALYFPRARYNLVRTGIAIYGLNPSAHAPLPE 238

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             +  +T + R+  ++       +SY  + +   +  I V A+GYADG+           
Sbjct: 239 GFRPALTWKTRLTSVKIFPPNHGISYNYRYRTKSEERIGVCAVGYADGFRRQ-------- 290

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                +G    ++G  VP++G + MD  M ++      ++GD + + G     +I  ++ 
Sbjct: 291 -----MGNMVLVRGRRVPVVGSVCMDQCMVNLDQVPEAQMGDEVVLIGQQGNDEITAEER 345

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A   GT +Y+++  +  R  + Y 
Sbjct: 346 AHEWGTIHYEVVCGLANRLPRIYV 369


>gi|55670437|pdb|1VFH|A Chain A, Crystal Structure Of Alanine Racemase From D-Cycloserine
           Producing Streptomyces Lavendulae
 gi|55670438|pdb|1VFS|A Chain A, Crystal Structure Of D-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
 gi|55670439|pdb|1VFS|B Chain B, Crystal Structure Of D-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
 gi|55670440|pdb|1VFT|A Chain A, Crystal Structure Of L-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
 gi|55670441|pdb|1VFT|B Chain B, Crystal Structure Of L-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
          Length = 386

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 168/377 (44%), Gaps = 29/377 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A++ N  ++ A +  +   AVVK NAYG G    A A   AG       + EE +
Sbjct: 11  EIDLDAVRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEAL 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQV 128
           +LR    Q RI        G  +   +T++   +S +  L    +   + G +    L  
Sbjct: 71  ELRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLXA 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G    +  +    +   +     Q++ + SH ACAD+P      +QL+ FR +
Sbjct: 131 DTGLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDM 190

Query: 186 ISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVV 236
           +++   +G++     +A+S   L  P  HF L R G+++YG +       P Q      +
Sbjct: 191 LAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSPELGTPAQLGLRPAM 250

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  A + L++   AG  VSYG       ++ +A+   GYADG P   SG           
Sbjct: 251 TLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGR---------- 300

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
            G   + G +    G+I MD  + D+ + L+ E GD   I G     +   +D A A+ T
Sbjct: 301 -GPVLVAGKIRRAAGRIAMDQFVVDLGEDLA-EAGDEAVILGDAERGEPTAEDWAQAAHT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y+++ RIG R  + Y
Sbjct: 359 IAYEIVTRIGGRVPRVY 375


>gi|157691928|ref|YP_001486390.1| alanine racemase [Bacillus pumilus SAFR-032]
 gi|157680686|gb|ABV61830.1| alanine racemase [Bacillus pumilus SAFR-032]
          Length = 393

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 178/399 (44%), Gaps = 69/399 (17%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L A+K N  ++ A +   ++  AVVK NAYG G  ++A     +G  +  V S+EE
Sbjct: 10  IEVNLDAIKRNIEAIQAHIPRKSKIMAVVKANAYGHGSVEVARQALESGATELAVASLEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPG----------------QEKIIFDTNLIPVISSVPQLTF 111
           G+ LR    +A I VL G  P                 +E  I + N I        L  
Sbjct: 70  GIVLRRAKIEAPILVL-GFTPLDCVKRAAAWRIDLSGLREDWIVEANEI--------LAE 120

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDP 170
                  G+     + VDTG  RLG+  +E L     +  K    +   I +H + AD+P
Sbjct: 121 EESQRRLGIH----VNVDTGMGRLGVRTKEELLGVVEALEKSENLRWDGIFTHFSTADEP 176

Query: 171 SSHVNSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
                 +Q   F   +   K  GI+     + +++  +  P +   + R GI LYG    
Sbjct: 177 DPDFTLLQHSIFIDFLRFLKKQGIKLPTVHMNNTAAAIAFPEFSADMIRLGIGLYGLYPS 236

Query: 222 ----GTDKINKSHPMQTVVTAEARIILIRKALAG-ELVSYGGQKKLTRDSLIAVAAIGYA 276
                 D +     ++  ++ +ARI  +++ +     VSYG      RD +IA   IGYA
Sbjct: 237 QYIESLDAVQ----LEPALSLKARIAFVKEMVTEPRTVSYGATYVAKRDEVIATIPIGYA 292

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
           DGY   LS              +GF+  +G  +PI G++TMDMTM  + + +  + G+ +
Sbjct: 293 DGYSRALS-------------NRGFMLFRGERMPIAGRVTMDMTMISLGE-MKAKQGEEV 338

Query: 335 QIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I+G     +I +D++A    T NY+++  +  R  +FY
Sbjct: 339 VIYGRQKGGEISVDEIAEMLNTINYEVIATLSRRVPRFY 377


>gi|229821553|ref|YP_002883079.1| alanine racemase [Beutenbergia cavernae DSM 12333]
 gi|259710063|sp|C5BZY7|ALR_BEUC1 RecName: Full=Alanine racemase
 gi|229567466|gb|ACQ81317.1| alanine racemase [Beutenbergia cavernae DSM 12333]
          Length = 378

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 167/383 (43%), Gaps = 37/383 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DL A+  N   +  ++G A   AVVK +AYG G   +A A   AG     V  + E
Sbjct: 6   RAVVDLGAIAGNVARLREVAGPAEVMAVVKGDAYGHGLVPVARAALGAGATWLGVAQLGE 65

Query: 68  GVKLRLYTPQARIFV-LYGIHPG---QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            + LR     AR    LY   PG    E +  D +L  V +              GV   
Sbjct: 66  ALTLRAAGVDARTLTWLYA--PGAPLAEALRADLDL-SVAAPWALDEVVGAARESGVVAR 122

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHVNSVQLE 180
             L+VDTG  R GL L E       +   +  G++ +  + SHLA ADD  S + + Q  
Sbjct: 123 VHLKVDTGMGRSGLFLDEWGGLLDAAVRAQAAGEIDVVGVWSHLASADDAESGLTAEQTR 182

Query: 181 RFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPM 232
            F   +   +   A      LA+S+G L     HF L RPGI++ G +   D+      +
Sbjct: 183 VFAEAVRRAEDAGAHLEVRHLANSAGTLAHAATHFDLVRPGIAVVGLSPFGDRTADELGL 242

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              +  EA + +++ A AG+ VSYG +   +  + +AV  +GYADG P         H+ 
Sbjct: 243 TPAMRLEAELTIVKHAPAGQGVSYGHEYTTSEATSLAVVPLGYADGIP--------RHA- 293

Query: 293 SVFLGGKGFIK--GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DV 346
               GG G ++       I G++ MD  + D+    +   GD   +FG     +    D 
Sbjct: 294 ----GGAGPVQVGDTWSRIAGRVCMDQFVLDLGAGANAHAGDVAVLFGSGADGEPTAADW 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A+ T  Y+++ R+G R  + +
Sbjct: 350 ARAADTITYEIVTRLGPRVPRVH 372


>gi|38233177|ref|NP_938944.1| alanine racemase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199436|emb|CAE49080.1| Putative alanine racemase [Corynebacterium diphtheriae]
          Length = 382

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 165/385 (42%), Gaps = 38/385 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L  +I   A+  N   +  +   A+   VVK + Y  G  ++A  +   G   F V ++
Sbjct: 3   LLETRISCDAIAANTRRLKDMVAPAQLMCVVKADGYNHGAPEVATVMARNGADQFGVATL 62

Query: 66  EEGVKLR---LYTPQARIFVLYGIHPGQE---KIIFDTNLIPV-ISSVPQLTFYSKLMSC 118
            E  +LR   +  P     + +   P Q+    I  D +L  V +  V  L   +     
Sbjct: 63  AEAHQLRDAGITLP----ILCWIWSPEQDFSAAIDRDIDLAAVSMDHVRALIAEAMRRPA 118

Query: 119 GVSHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           G      +++DT  +R G+   +  EA +  H      +   + + SHLACADD  S   
Sbjct: 119 GTRVRVTVKIDTELHRSGIDEANWTEAFELLHACPQVNV---TGVFSHLACADDLESDYT 175

Query: 176 SVQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q E FR  IS  + +   L     A+S   L  P+ HF + RPG++LYG        H
Sbjct: 176 DHQAEVFRRAISAGRNVGLDLPVNHLAASPATLTRPDLHFDMVRPGLALYGHEPIAGLDH 235

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +T    + +++   AG+  SY        D  + V  +GYADG P  + G    H
Sbjct: 236 GLREAMTWIGSVTVVKPIAAGQGTSYNMTWHAPADGYLCVVPVGYADGLPRNVQG----H 291

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD----IKLDD 345
                   +  I G   P +G++ MD  +  + D S  +  GD   IFGP     + + +
Sbjct: 292 L-------EVTIAGTRYPQVGRVCMDQIVVFLGDNSRGVAPGDEAIIFGPRDTQAMTVTE 344

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +A A+GT NY++L R   R  + Y+
Sbjct: 345 LACATGTINYEILCRPTGRSHRTYS 369


>gi|89099495|ref|ZP_01172371.1| alanine racemase [Bacillus sp. NRRL B-14911]
 gi|89085881|gb|EAR65006.1| alanine racemase [Bacillus sp. NRRL B-14911]
          Length = 392

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 166/374 (44%), Gaps = 31/374 (8%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  +K N  SM  L  G+ +  AVVK N YG G  + A A   AG     V  ++E 
Sbjct: 16  EINLDHIKENVKSMKKLLPGDVKLFAVVKANGYGHGDIQAAGAALEAGADCLAVAFLDEA 75

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYAL 126
           + LR    +A I VL    P    +    +   +  +V Q+ +  K + C  G    + +
Sbjct: 76  LSLRQRGIEAPILVLGASRPEDAPLAASAD---ITLTVFQVNWLEKALPCLQGKRLTFHV 132

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG  R+G+  + E L     +  +   +L  I +H A AD+        QL RFR +
Sbjct: 133 KLDTGMGRIGVREKDELLAIEKLAGREDAFELQGIYTHFATADELDDSYFREQLGRFREM 192

Query: 186 ISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
           +S    +   +  ++S+  L  P   F   R GIS+YG T      H    P++   +  
Sbjct: 193 LSWLGKVPEMVHTSNSAASLRFPEARFNAVRMGISMYGLTPSPEIEHELPFPLKEAFSLH 252

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARI+ ++K   G+ VSYG   +   D  I    IGYADG+   L G +            
Sbjct: 253 ARIVHVKKLQKGDKVSYGATYEAEGDEWIGTLPIGYADGWIRRLQGQEV----------- 301

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G  VPI+G+I MD  M  +     +E G    + G      I ++++A    T NY
Sbjct: 302 -LVNGSRVPIVGRICMDQCMIRL--PYGVEPGTAATLIGAQGDSMISVNEIAAKLETINY 358

Query: 356 DLLVRIGTRYAKFY 369
           ++   I +R  + Y
Sbjct: 359 EVTCMISSRVPRVY 372


>gi|213648187|ref|ZP_03378240.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
          Length = 295

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 134/292 (45%), Gaps = 14/292 (4%)

Query: 78  ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLG 136
           A + +L G+ P          + P+++SV Q+  +  L        P  +Q+D+G +RLG
Sbjct: 11  AMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLIQLDSGMSRLG 70

Query: 137 LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           ++ ++          +       IISHLA AD P   +N  Q    +     +     SL
Sbjct: 71  VTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAKKAFPTSRYSL 130

Query: 197 ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSY 256
           A+S G+ L P +   L RPG++L+G   +   S P++   T    I+ ++    G  + Y
Sbjct: 131 ANSCGMFLHPAWREDLCRPGVALFG-VAQPWFSTPLKPAFTLTLTILRVQDVPVGTPIGY 189

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           G     TR   IA  + GYADG P  L        P+    G  + +G  +P+LG++ MD
Sbjct: 190 GSTVTTTRPLRIATVSAGYADGIPRNL------RPPA----GVCW-RGVRLPVLGRVCMD 238

Query: 317 MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
             M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ + 
Sbjct: 239 SFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFRRI 289


>gi|163786834|ref|ZP_02181282.1| alanine racemase [Flavobacteriales bacterium ALC-1]
 gi|159878694|gb|EDP72750.1| alanine racemase [Flavobacteriales bacterium ALC-1]
          Length = 368

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 171/380 (45%), Gaps = 41/380 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL+AL +N++ + + L+   +  AVVK  AYG    +IA  L +  V  F V   +E
Sbjct: 9   LEIDLSALTHNFNYLKSKLNAKTKFLAVVKAFAYGSDSIEIAKHLQSLEVDYFAVAYAKE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL--MSCGVSHPYA 125
           GV LR       I VL+   P   K I +  L P I S   L  +  +       ++P  
Sbjct: 69  GVVLRDAGITTPIIVLHP-QPVNFKTIIERCLEPSIYSAKVLNEFIAVAETESQTNYPVH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADD-PSSHVNS 176
           ++ +TG NRLG        F  N     + +L +        + SHLA ++D       +
Sbjct: 128 IKFNTGLNRLG--------FWENDVEYIVSKLRVTKSIVAKSLFSHLAVSEDINEEEFTN 179

Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           +Q++ F+ +   ++      I   L ++SG++  P+ H  + R GI LYG  + + +   
Sbjct: 180 LQVQNFKQIAKEFESKIGYKIWLHLCNTSGVINYPDTHLDMVRCGIGLYGFGNSVKEDQY 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ + + ++ I  I K   GE V Y    K      IA   IG+ADG             
Sbjct: 240 LKPIASLKSVISQIHKIEKGETVGYNRAYKAKGFEKIATVPIGHADGI------------ 287

Query: 292 PSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
             ++  G GF  I      I+G + MDM M +IT+ +    GD + IF  + K    A +
Sbjct: 288 NRIYGNGNGFVIINSKKAQIIGNVCMDMIMVNITN-IDCNEGDEVIIFNTNHKASKFAES 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T +Y++L  I  R  + +
Sbjct: 347 ANTISYEILTSISQRVKRVF 366


>gi|172058812|ref|YP_001815272.1| alanine racemase [Exiguobacterium sibiricum 255-15]
 gi|171991333|gb|ACB62255.1| alanine racemase [Exiguobacterium sibiricum 255-15]
          Length = 357

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 160/367 (43%), Gaps = 23/367 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID  A+ +N   + A  G+    AVVK + YG G   +A      G     V  +EE 
Sbjct: 7   IEIDREAIAHNVREIKARIGHQTMMAVVKADGYGHGAVTVAEIALANGADLLAVALLEEA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           ++LR    QA I +L  + P    I  + ++ +PV S+       +K     V H    +
Sbjct: 67  IELREAGIQAPILMLETLLPEHAPIASNYDVAVPVFSA--DWLREAKQHLTDVDHLRLHI 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VD+G  RLGL   E LD      +  + +L  I +H A AD+ +S +   Q   F   +
Sbjct: 125 KVDSGMGRLGLQTPEELDAVLQELDSDVMELEGIYTHFATADELNSRLFDEQQTVFLHFV 184

Query: 187 SHYKGIEASLASSS--GILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEAR 241
                I    A++S   I L     F + R GI+LYG     + I     ++   T ++R
Sbjct: 185 ERVPDIRYIHAANSAGAIRLIGQDPFNVVRIGIALYGAMPSDEMIPYYEFLRPAFTLKSR 244

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ +++   G+ +SYG       D  I    IGYADG+               F G    
Sbjct: 245 LMQVKQVEPGQTISYGATYTAPTDEWIGTVPIGYADGWSRK------------FQGYSLL 292

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + GY   I+G++ MD  M  +  +    VG  + + G  + +D+ A   GT NY++L + 
Sbjct: 293 VDGYPCEIVGRVCMDRLMIRLPRNYP--VGTEVTLIGQGVPIDEAAHWLGTINYEVLCQF 350

Query: 362 GTRYAKF 368
             R  + 
Sbjct: 351 SKRVPRI 357


>gi|296315218|ref|ZP_06865159.1| alanine racemase [Neisseria polysaccharea ATCC 43768]
 gi|296837855|gb|EFH21793.1| alanine racemase [Neisseria polysaccharea ATCC 43768]
          Length = 352

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 176/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AV+K +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYQILKEMHG-GKLLAVLKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+S     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLSRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PTNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|282849282|ref|ZP_06258667.1| alanine racemase [Veillonella parvula ATCC 17745]
 gi|282580986|gb|EFB86384.1| alanine racemase [Veillonella parvula ATCC 17745]
          Length = 370

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 172/379 (45%), Gaps = 33/379 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+ + ++ N   + ++L   + + AV+K N YG G   +       G +   V   EE
Sbjct: 6   LTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVAIPEE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--- 124
            V LR       I++L    P   +++ DTN IP +     L    K+     +H     
Sbjct: 66  SVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALDKVAD---NHDMIIR 122

Query: 125 -ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF 182
            A+ VDTG +R+G+  ++A++F     + +  ++    SH++ AD    SH +S Q ++F
Sbjct: 123 VAVAVDTGMHRIGIKPEDAIEFIKRIESYENLEIDGFFSHMSNADAADQSHAHS-QTQKF 181

Query: 183 RTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
             ++   +          SLA+S+G+L   +  F   RPGI  YG    ++  + +  + 
Sbjct: 182 HHMVDEIRAFRPEADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + ++ ++   AGE + YG          IA   +GYADGYP +LS          
Sbjct: 242 VLSFHSEVVHVQHIPAGEGIGYGSTYITAEPMTIATIPVGYADGYPRSLSNR-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I G   P++G+I MD  M  + D+++++ GD + + G      I   ++A  +
Sbjct: 294 ---GTVLIHGTRCPVVGRICMDQFMVAVPDTITVKPGDKVVLLGSQGHESISALEIAALA 350

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++      R  + Y
Sbjct: 351 STIPYEIFCGFSERVPRQY 369


>gi|330817458|ref|YP_004361163.1| Alanine racemase [Burkholderia gladioli BSR3]
 gi|327369851|gb|AEA61207.1| Alanine racemase [Burkholderia gladioli BSR3]
          Length = 356

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 158/344 (45%), Gaps = 28/344 (8%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
            ++  AVVK NAYG G  +  P L +     F +  +EE VKLR       I +L G   
Sbjct: 27  RSKVWAVVKANAYGHGLARAFPGLRS--TDGFGLLDLEEAVKLRELGWAGPILLLEGFFR 84

Query: 89  GQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQ--VDTGFNRLGLSLQE-ALD 144
             +  + D  +L   + +  QL     L +  +S P  +Q  +++G NRLG +  +    
Sbjct: 85  STDVDVIDRYSLTTTVHNDDQLRM---LETARLSKPINIQLKMNSGMNRLGYAPDKYRAA 141

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL 204
           +        +GQ++L+ +H A AD      +  Q+  F        G   SLA+S+ ++ 
Sbjct: 142 WERARTCPGIGQITLM-THFADADGERGVAD--QMAAFERGAEGIAGAR-SLANSAAVMW 197

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIRKALAGELVSYGGQK 260
            P+ H    RPGI LYG +     +      +Q  +T  + +I ++    G+ V YGG  
Sbjct: 198 HPDTHGDWVRPGILLYGASPSGRAADIAGAGLQAAMTLGSELIAVQNIAKGQAVGYGGAF 257

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
                  I V A GYADGYP     +  E +P V       + G    I+G+++MDM   
Sbjct: 258 VAPAQMRIGVVACGYADGYPR----IAPEGTPIV-------VDGVRTRIVGRVSMDMITV 306

Query: 321 DITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           D+T      +G  ++++G  + +DDVA +  T  Y+L+  I +R
Sbjct: 307 DLTPVPGAGIGARVELWGQALPIDDVAASCSTVGYELMCAIASR 350


>gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
 gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
          Length = 823

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 170/376 (45%), Gaps = 33/376 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N++   + L    +   +VK  AYG G  +IA  +   G     V   +E
Sbjct: 463 LEINLNALTHNYNFYKSRLKPETKVMVMVKAFAYGGGSVEIANHIQTMGADYLAVAFTDE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           GV LR +     I VL   +P +E I       L PV+ S     F+  + +   +H   
Sbjct: 523 GVTLRKHGISLPIMVL---NPMEESIDLCHQYELEPVVYSP---AFFKMVSNYCQAHDSK 576

Query: 126 LQV----DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLE 180
           L +    DTG +RLG   +   +       +   +++ + +HL  AD+      S+ QL+
Sbjct: 577 LSIHLDMDTGMHRLGFEEKHLEELGLLLEAETRLRIASVYTHLVGADEEIHKDYSLRQLK 636

Query: 181 RFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            F+ +    + +  S       +S+GI+  P++   + R GI LYG       +  ++++
Sbjct: 637 LFKKMKGKLEHLLPSSTLFHALNSAGIVAFPDFQMHMVRLGIGLYGVEVTGKHASSLRSI 696

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            T +  I  I+    GE V Y  +  L     IA  ++GYADGY    S           
Sbjct: 697 STLKTTISQIKTLEPGETVGYSRKGSLPEGGKIATLSLGYADGYDRRFSN---------- 746

Query: 296 LGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
             GKG+  I+G   PI+G I MDM M D+TD   ++ G+   I+G  I L ++A    T 
Sbjct: 747 --GKGYVIIQGKKAPIIGNICMDMCMVDVTDIEDVKAGNEAIIYGEGISLKELADRIETI 804

Query: 354 NYDLLVRIGTRYAKFY 369
            Y+LL  I  R  + Y
Sbjct: 805 PYELLTNISARVKRIY 820


>gi|19111844|ref|NP_595052.1| alanine racemase Alr2 [Schizosaccharomyces pombe 972h-]
 gi|12229663|sp|Q9P5N3|ALR2_SCHPO RecName: Full=Putative alanine racemase C359.02
 gi|7838267|emb|CAB91571.1| alanine racemase Alr2 [Schizosaccharomyces pombe]
          Length = 370

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 170/382 (44%), Gaps = 36/382 (9%)

Query: 8   RLKIDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFV 62
           R  IDL A+  N++ +  L    + +A    ++K NAYG G  ++A  L      + F V
Sbjct: 5   RAVIDLRAIGYNYNLIRELLDEKNPDAHILCILKANAYGHGAVEVAQFLAKYCSAEGFGV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGV 120
            S+EE ++LRL   Q RI +L G    ++++  I   N    I    QL      M+   
Sbjct: 65  ASIEEALELRLSGIQNRILLLEGFFTDEDELSLIDKYNFSITIHCEEQL---KSFMNYPF 121

Query: 121 SHPYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
             P    L++D+G NRLG +  E  D      N K     +  +H A AD P    +   
Sbjct: 122 KKPVEVHLKLDSGMNRLGFTPAEYADKYRLLKNHKNVSGIVKATHFAFADIPEK--SEYT 179

Query: 179 LERFRTLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYG------GTDKINKS 229
           L+++R        +   L++  G+++       H    R G  LYG              
Sbjct: 180 LKQWRIFEKAAGCLPDPLSAGGGVIVVGWLNTIHMDWLRTGSMLYGLDPYDLDAKAPELP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            P+   +   + I+ ++     + + YGG    TRDSLI V AIGY DG+P   +G    
Sbjct: 240 KPLIPAMKLMSTIVCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNG---- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVAL 348
             P +       I G  VP +GK+ MDM   D+TD   ++ GD + ++G P++ +++V+ 
Sbjct: 296 -CPVI-------INGKRVPTVGKVCMDMLAIDVTDVPDVKRGDDVVLWGNPELTIEEVST 347

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
            S    ++++  +  R    YT
Sbjct: 348 FSNENPFEIITGLTRRVPLQYT 369


>gi|260424611|ref|ZP_05732650.2| alanine racemase [Dialister invisus DSM 15470]
 gi|260402530|gb|EEW96077.1| alanine racemase [Dialister invisus DSM 15470]
          Length = 361

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 166/362 (45%), Gaps = 27/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++IDL A ++N   + +   N    AV+K NAYG G  +   A    G     V  VEEG
Sbjct: 1   MEIDLRAFRHNLRVIRSHLKNVPALAVIKANAYGHGAVECLRAALEEGCVGAAVARVEEG 60

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PV--ISSVPQLTFYSKLMSCGVSHPYA 125
             +R       ++VL    P +  +  +  LI PV   +++  L   +  +   V     
Sbjct: 61  RVVRASGFDCPVYVLGLPLPEEMSVGVNEELILPVDDTTNLEALEIAASTLKKMVE--VM 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L +DTG NR+G   ++   F           +  + +HLA AD  +      QL  F   
Sbjct: 119 LPIDTGMNRIGTHAKDLSAFLEKLKRYPHLHIHGLFTHLATADAKNKSKTYKQLAEFEEA 178

Query: 186 ISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEA 240
           +S    +E    S ASS+G++  P   + L RPGI  YG +  + +     ++ ++T  +
Sbjct: 179 LSAMPSLENLVISAASSAGVVDIPESWYNLVRPGIIQYGPSPSNTMLNYLDLKYMMTVVS 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I  ++    GE V YG      +D  IA   IGYADGYP  LS     +  +V +G K 
Sbjct: 239 HITHVQVVHKGETVGYGATYTAGKDMRIATIPIGYADGYPRALS-----NKGAVLIGEK- 292

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
                  PI+G+I MD  M  + D  ++  GD + + G     +IK+D++A  +GT +Y+
Sbjct: 293 -----RCPIVGRICMDQLMAAVDD--TVMPGDEVVLIGKQGDEEIKVDELAELAGTIHYE 345

Query: 357 LL 358
           +L
Sbjct: 346 IL 347


>gi|323699155|ref|ZP_08111067.1| alanine racemase [Desulfovibrio sp. ND132]
 gi|323459087|gb|EGB14952.1| alanine racemase [Desulfovibrio desulfuricans ND132]
          Length = 374

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 170/383 (44%), Gaps = 37/383 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LR++I L  L++N+     +  + R   V+K +AYG G  ++A AL   G   F V  V 
Sbjct: 7   LRVRIHLDNLRHNYRLFTKI--HDRVIPVIKSDAYGHGLVEVASALEKDGADTFAVGFVH 64

Query: 67  EGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  KLR      RI  L G I     + ++   ++  IS   QL                
Sbjct: 65  EAAKLRRAGCDKRILALLGPISDEDIQSLWTDRILTPISHWAQLRRVLAASEQNGPLDIG 124

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVN-SVQLERF 182
           L+ DTG  RLG   +EA +    +   K G ++ ++  SHLA AD+P    + ++Q  RF
Sbjct: 125 LKFDTGMRRLGFLPEEAGEV---AALLKGGNVTPVMATSHLARADEPGREKDVALQARRF 181

Query: 183 RTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQ 233
           +  +    G    +EA+LA+S+G ++  N      R GI LYG     G  +      + 
Sbjct: 182 QAALDGLAGAGFVVEANLANSAGGMVHENCRMDSMRLGIGLYGCDPLEGAGEERLPGKLL 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   A ++ +     GE +SYG      RD+++A+  +GYAD Y   LS         
Sbjct: 242 PAMEVTAPVMQVHPLKRGESISYGWTFTAERDAMVAIVGVGYADNYSRALSNR------- 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSL--SIEV--GDYIQIFGP----DIKLDD 345
               G+  + G  VPI G++ M MT  D+T+ +   IEV  GD   + G      +  +D
Sbjct: 295 ----GEMVLHGRRVPIRGRVCMQMTAVDVTELMGEGIEVLPGDEAWLLGGPGEHPVTPED 350

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
           +A    T  Y+    +G    ++
Sbjct: 351 LAEWGNTITYEAFCLLGQNRREY 373


>gi|226305403|ref|YP_002765361.1| alanine racemase [Rhodococcus erythropolis PR4]
 gi|226184518|dbj|BAH32622.1| alanine racemase [Rhodococcus erythropolis PR4]
          Length = 400

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 156/339 (46%), Gaps = 22/339 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N   +   +G+A   AV+K + Y  G   +A    +AG ++  VT++ E + 
Sbjct: 32  VDLDAIAHNVRVLREFAGDAALMAVIKADGYNHGAVAVARTALSAGARELGVTTIAEALV 91

Query: 71  LRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR     A +   L+G+       I     I V S              G      L+VD
Sbjct: 92  LREAGITAPVLAWLHGLDADFSSAIRSDVEIGVSSPRHLAAVVDAARVLGQQATVTLKVD 151

Query: 130 TGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG NR G+S  E    LD    + ++   +L  + SHLA +D+P   V  +Q +R    +
Sbjct: 152 TGLNRNGVSRTEWPQMLDDLATARDEGTIRLRGVFSHLAHSDEPHHDVIDMQKQRLIEAV 211

Query: 187 S--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEA 240
                +G E     L++S+  +  P+  F + RPGI++YG +         ++  +T  A
Sbjct: 212 VDVRARGFEPEVVHLSNSAATVTRPDLQFDMVRPGIAIYGLSPVPELGDFGLRPAMTLRA 271

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++IL++K  AGE VSYG Q     D+ +A+  +GYADG   +LSG        V LGGK 
Sbjct: 272 KVILVKKVAAGEGVSYGHQWVAPHDTTLALLPVGYADGLTRSLSG-----KFEVQLGGK- 325

Query: 301 FIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFG 338
                    +G+I MD  + D+  D   +  GD    FG
Sbjct: 326 -----RRQAVGRICMDQVLVDLGPDGDGVREGDTAIFFG 359


>gi|110640090|ref|YP_680300.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406]
          Length = 842

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 179/383 (46%), Gaps = 48/383 (12%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +   + L  + +   +VK  +YG G  +IA  L   GV    V   +E
Sbjct: 483 LEINLDALIHNLNVYRSKLKPDTKIMCMVKAFSYGSGGFEIAQLLQYHGVDYLAVAYADE 542

Query: 68  GVKLR---------LYTPQARIF---VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           G +LR         +  P    F   + Y + P     I++  L+  I    Q    +K 
Sbjct: 543 GARLRENGITLPIMVMNPTLSSFDTILRYELEPE----IYEPVLLKQIIEYAQ----AKQ 594

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-- 173
              G+     +++DTG  RLG   ++  +      + +  ++  + +HLA A D + H  
Sbjct: 595 KHIGIH----IKIDTGMKRLGFEKKDVTEIAQQLKHTEFVKVYSVFTHLA-ASDSAEHDA 649

Query: 174 VNSVQLERFRTLIS------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
             + QL  F  +IS      +Y  I+ + A+SSGI+     H+ + R GI LYG      
Sbjct: 650 FTAHQLNLFDEVISLFQTTLNYSFIKHA-ANSSGIMRFKEAHYDMVRLGIGLYGVESAGL 708

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-SGL 286
             + +Q +   +  I  I++    E V Y  + ++T+ S IA  A+GYADGY     +G+
Sbjct: 709 YQNELQAISVFKTHISQIKEITTEESVGYSRKGRVTKPSKIATIAVGYADGYNRRFGNGI 768

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                      G+  + G   PI+G + MDM+M D+TD+ + + GD + +FG +  + D+
Sbjct: 769 -----------GEVLVNGVRCPIIGNVCMDMSMVDVTDAHAAQ-GDEVILFGHNPTVSDL 816

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A   GT  Y++L  +G R  + +
Sbjct: 817 AKRIGTIPYEILTSVGARVKRIF 839


>gi|227502721|ref|ZP_03932770.1| alanine racemase [Corynebacterium accolens ATCC 49725]
 gi|227076451|gb|EEI14414.1| alanine racemase [Corynebacterium accolens ATCC 49725]
          Length = 365

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 166/383 (43%), Gaps = 44/383 (11%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            L+  IDL A+ +N   +    G + +   VVK +AYG G E++ P +  AG     V +
Sbjct: 1   MLKTTIDLAAIAHNVRLIKEKIGPDVKLMCVVKADAYGHGAERVVPVMLEAGADSIGVAT 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHP 123
           + E V+LR     + I         Q   + +  L   I  +V       KL+   +   
Sbjct: 61  LTEAVQLRRMGVDSPIAAWIW----QSDQVLEEALASGIQIAVNSPAQAQKLVEAEIPAE 116

Query: 124 YALQVDTGFNRLGLS----------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             ++V+TG +R G+           L+EA   T       LG    ++SH ACADDP + 
Sbjct: 117 IYIKVETGMHRSGVDKADWDEVFALLREAPHIT------VLG----LMSHFACADDPDNA 166

Query: 174 VNSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
            N  Q E FR  +   +  G+E     LA+S   L  P+ HF   R GI+ YG      +
Sbjct: 167 HNDTQEEEFRRALDAARAAGLECPVNHLANSPATLSRPSAHFDQVRVGIACYGLEPIAGR 226

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
            H ++  +T    +  ++     E  SYG      +   +A    GYADG P    G   
Sbjct: 227 DHGLRPAMTWSGNVFGVKPIDKNEATSYGRTWSADKPGFLATVDCGYADGLPRAYQG--- 283

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDV 346
                V +GG+      + P +G++ MD  + D+ D+   I  GD + IFG   +   ++
Sbjct: 284 --HLQVGIGGR------LYPQVGRVCMDQIVVDLGDNPHGIAPGDEVTIFGQGGMSATEL 335

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A GT NY+++ R   R  + Y
Sbjct: 336 ADAVGTINYEVVCRPTGRTEREY 358


>gi|142822|gb|AAA22378.1| D-alanine racemase cds [Bacillus subtilis]
 gi|224732|prf||1112147A Ala racemase
          Length = 389

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 173/387 (44%), Gaps = 36/387 (9%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +  F R    +IDL+A+K N  +M    G +    AV K NAYG G  + A A  +AG
Sbjct: 1   MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVEKANAYGHGDAETAKAALDAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                +  ++E + LR    +A I VL  + P    I  + ++     SV  L   ++  
Sbjct: 61  ASCLAMAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHT 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175
             G  H + L+VDTG NRLG+  +E +       ++    +   + +H A AD+      
Sbjct: 121 KKGSLH-FHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYF 179

Query: 176 SVQLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYG------GTDKIN 227
            +Q ERF+ LI+    K +    A+S+  L      F   R GI +YG       +D+I 
Sbjct: 180 LMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADMSDEIP 239

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            +  P  T+ +  + + LIRK   GE VSYG +    +D+ I    +GYADG+   L G 
Sbjct: 240 FQLRPAFTLHSTLSHVKLIRK---GESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGT 296

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           D              +KG  + I G+I MD  M ++        G  + + G      I 
Sbjct: 297 DI------------LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYIS 342

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +D++A    T NY++   I +R  + +
Sbjct: 343 MDEIAGRLETINYEVACTISSRVPRMF 369


>gi|150399575|ref|YP_001323342.1| alanine racemase [Methanococcus vannielii SB]
 gi|150012278|gb|ABR54730.1| alanine racemase [Methanococcus vannielii SB]
          Length = 380

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 178/398 (44%), Gaps = 66/398 (16%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+KNN   +  ++  +++  AVVK NAYG G  +I+  +   G     V   +E 
Sbjct: 9   EIDLNAVKNNIKEIRRITNSDSQIMAVVKANAYGHGAVEISKVVLKNGADRLAVARSKEA 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH------ 122
           ++LR    +  I V +G +  +E       ++ +I +   LT YS  ++  +        
Sbjct: 69  IELRNAGFKCPILV-FGYNTIEE-------ILELIKNDVILTVYSIEIAKDIQKIAKDIQ 120

Query: 123 ----------PYALQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACA 167
                        L++DTG NRLG      ++ E L  +    N    ++  I +H A A
Sbjct: 121 KIAKDIQKIAKVHLKIDTGMNRLGFIPDKKTINEILKISE-FLN---IEIEGIYTHFADA 176

Query: 168 DDPSSHVNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG- 221
           D+        Q  +F   ++  +  GI   +   ++S+ I+  P  H  + RPGI LYG 
Sbjct: 177 DNSDKTYTKKQFSKFMEFLTDLEDSGINIPIKHVSNSAAIIDHPETHLNMVRPGIILYGL 236

Query: 222 ------GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275
                   DKIN    ++ V++ +  I  ++    G  +SYG      + S IA   +GY
Sbjct: 237 YPSELVQKDKIN----LEPVMSLKCLITHVKDVPRGTKISYGCTYITKKKSKIASIPLGY 292

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335
           ADG+   L              GK  + G   PI+G+I MD  M D+++   +++GD + 
Sbjct: 293 ADGFTRMLKN------------GKVLVGGKRAPIVGRICMDQCMADVSNIDDVKIGDTVL 340

Query: 336 IFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +FG   K    +++++    T NY+L+  I  R  + Y
Sbjct: 341 VFGKHEKYTVPVEEISNELKTINYELVCMISNRVPRVY 378


>gi|257126443|ref|YP_003164557.1| alanine racemase [Leptotrichia buccalis C-1013-b]
 gi|257050382|gb|ACV39566.1| alanine racemase [Leptotrichia buccalis C-1013-b]
          Length = 390

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 179/400 (44%), Gaps = 65/400 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            + L+I+   L+ N   +  ++ N     V+KDNAYGLG   I P L       F V  +
Sbjct: 2   LVNLEINKENLEKNLEKIRFINKN--IICVIKDNAYGLGIGNILPILIENNCNYFAVAYI 59

Query: 66  EEGVKLR--------------LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF 111
           +E +K+R              L   + +I  L  I P + +   + ++   I +  QL+ 
Sbjct: 60  DEAIKIREILKNFEKEKKLKFLENRKIKIMALNYIKPKKLEYAIENDVELTIFNFSQLSD 119

Query: 112 YSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALDFTH-------NSFNKKLGQLSLII 161
           Y K++     +      ++V++G NRLG +  E L+          NS N KL  +S I 
Sbjct: 120 YLKILEESFENTVLKIHIKVNSGMNRLGFNESEILELIEKIKKYEINSKNNKLEIIS-IF 178

Query: 162 SHLACADDPSSHVNSVQLERFRTLIS---------HYKGIEASLASSSGILLG--PNYHF 210
           SH++ A++        Q+E++  ++           YK ++AS      +L      Y++
Sbjct: 179 SHISDAENQLE--TEKQVEKYENILKIFDKNNVKYQYKHLQAS-----PLLFKYEEKYNY 231

Query: 211 QLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAV 270
              R G++LYG  + +     +  V+T +++II IR     + +SYG +  + RDS I +
Sbjct: 232 DFARVGMALYG-MEPLFYDVGLLDVITVKSQIINIRNVKKNDKISYGSKGVVKRDSKIGI 290

Query: 271 AAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV 330
            +IGYA G    +     E+S   ++     + G    I+G+I MDM   D+TD   +E+
Sbjct: 291 VSIGYAHGLQKQI-----ENSQEAYV----LVNGKKAKIVGEICMDMIFVDLTDINDVEI 341

Query: 331 GDYIQIFGPD----------IKLDDVALASGTTNYDLLVR 360
            D + I G            I L  VA  +GT   D+L +
Sbjct: 342 NDKVVIVGSQRNVENGVNERITLRQVARWAGTIQDDVLTK 381


>gi|198284522|ref|YP_002220843.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666734|ref|YP_002427188.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|254802357|sp|B7J911|ALR_ACIF2 RecName: Full=Alanine racemase
 gi|254802358|sp|B5EP95|ALR_ACIF5 RecName: Full=Alanine racemase
 gi|198249043|gb|ACH84636.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518947|gb|ACK79533.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 364

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 159/365 (43%), Gaps = 21/365 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +   +  AR  A VK NAYG G    AP L  AGV  F V S+EE   
Sbjct: 9   ISAAALRHNVAVVREHAPRARIMAAVKANAYGHGVTLCAPVLAEAGVDAFAVASLEEAEA 68

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           L     +  I +L G     E  +  +   + VI    QL +     +      + ++VD
Sbjct: 69  LHALGLERPICLLGGPFDADEVSVAAERAYLLVIHEQRQLQWLETRAADAALRLF-IKVD 127

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           TG +RLG + +               ++  ++SHLA +D P    N  Q   F   I+H 
Sbjct: 128 TGMHRLGFAPERLPALFAALQRHPRWEVLGLMSHLARSDTPDDPFNRQQAGVFADAIAHV 187

Query: 190 KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARII 243
             + A   SLA+S G+L  P  H    RPG+ LYG +    +      +Q V++  + ++
Sbjct: 188 GHVTAGQHSLANSGGVLALPFTHQYWVRPGLMLYGLSPFAGRRGSEIGLQPVLSWRSAVV 247

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            IR+   G+ + YG   +      + V A GY DGYP  L             G    + 
Sbjct: 248 AIRELGPGDWLGYGAAWQAPARCRVGVVAAGYGDGYPRHLG-----------CGAPVTVA 296

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIG 362
           G     L +++MDM   D+T ++  ++G  + + G     L+ +A   GT +Y++  R+ 
Sbjct: 297 GQTTRTLARVSMDMLFVDLT-AVEADIGAPVVLMGAGGPPLESLAAELGTISYEMSCRMQ 355

Query: 363 TRYAK 367
            R  +
Sbjct: 356 MRVPR 360


>gi|238019929|ref|ZP_04600355.1| hypothetical protein VEIDISOL_01805 [Veillonella dispar ATCC 17748]
 gi|237863453|gb|EEP64743.1| hypothetical protein VEIDISOL_01805 [Veillonella dispar ATCC 17748]
          Length = 370

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 168/378 (44%), Gaps = 31/378 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+ + ++ N   + ++L   + + AV+K N YG G   +       G +   V   EE
Sbjct: 6   LTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVAIPEE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--- 124
            V LR       I++L    P   +++ DTN IP +     L    K+     +H     
Sbjct: 66  SVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALDKVAE---NHDMIIR 122

Query: 125 -ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            A+ VDTG +R+G+  ++A++F     + +  ++    SH++ AD         Q ++F 
Sbjct: 123 VAVAVDTGMHRIGIKPEDAVEFIKRVESYENLEVDGFFSHMSNADAADQSHAHGQAQKFH 182

Query: 184 TLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTV 235
            ++   +          SLA+S+G+L   +  F   RPGI  YG    ++  + +  + V
Sbjct: 183 KMVDEIRAFRPDADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKPV 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + ++ ++   AGE + YG          IA   +GYADGYP +LS           
Sbjct: 243 LSFHSEVVHVQHLEAGEGIGYGSTYVTPEPMTIATIPVGYADGYPRSLSNR--------- 293

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
             G   I G   P++G+I MD  M  + D+++++ GD + + G      I   ++A  + 
Sbjct: 294 --GTVLIHGTRCPVVGRICMDQFMVAVPDTITVQPGDKVVLLGSQGHESISALEIAALAS 351

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++      R  + Y
Sbjct: 352 TIPYEIFCGFSERVPRQY 369


>gi|306819368|ref|ZP_07453076.1| alanine racemase [Mobiluncus mulieris ATCC 35239]
 gi|304647855|gb|EFM45172.1| alanine racemase [Mobiluncus mulieris ATCC 35239]
          Length = 457

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 177/398 (44%), Gaps = 65/398 (16%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  +DL A + N   M   +  ++  A+VK +AYG G E+++ A   AG Q   V  V 
Sbjct: 12  VRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVAKVA 71

Query: 67  EGVKLRLY-------------TP-----QARIFV--LYGIHPGQEKIIFDTNLIPV---- 102
           E  +LR +             TP     ++R+F     G+   Q   IF     P     
Sbjct: 72  EAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTAQRPRIFAWLYTPSTDLK 131

Query: 103 ----------ISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
                     +S++ QL   S    + G+     L+VDTG  R G +L E  +    +  
Sbjct: 132 STIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKLARA 191

Query: 152 KK---LGQLSLIISHLACADDPSSHVNSV---QLERFRTL--ISHYKGIEASL---ASSS 200
           ++   L ++S I SH A +D+PS+   +    QL  F     I+   G++  L   A++ 
Sbjct: 192 RERSGLVEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVSGLQPKLRHMAATG 251

Query: 201 GILLGPNYHFQLTRPGISLYG--GTDKINKSHPM--QTVVTAEARIILIRKALAGELVSY 256
            IL  P  HF L R GIS YG     +I  +  +  + V+  E  +  ++K  AG  VSY
Sbjct: 252 AILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSAVSY 311

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           GG+      + +A+  IGYADG+   L G             K ++ G++ P++G+I MD
Sbjct: 312 GGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRIPMD 360

Query: 317 MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             + ++  ++    GD I    P +K  D+A+  G  N
Sbjct: 361 QIILNLGSAID-GAGDLIP---PPLKAGDLAVIFGDPN 394


>gi|229489364|ref|ZP_04383227.1| alanine racemase [Rhodococcus erythropolis SK121]
 gi|229323461|gb|EEN89219.1| alanine racemase [Rhodococcus erythropolis SK121]
          Length = 400

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 157/339 (46%), Gaps = 22/339 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N   +   +G+A   AV+K + Y  G   +A    +AG ++  VT++ E + 
Sbjct: 32  VDLDAIAHNVRVLREFAGDAALMAVIKADGYNHGAVAVARTALSAGARELGVTTIAEALV 91

Query: 71  LRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR     A +   L+G+       I     I V S              G      L+VD
Sbjct: 92  LREAGITAPVLAWLHGVDADFASAIRSDVEIGVSSPRHLAAVVGAARVLGQQATVTLKVD 151

Query: 130 TGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG NR G+S  E    LD    + ++   +L  + SHLA +D+P   V  +Q +R    +
Sbjct: 152 TGLNRNGVSRTEWPQMLDDLATARDEGTIRLRGVFSHLAHSDEPHHDVIDMQKQRLIDAV 211

Query: 187 S--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEA 240
           +    +G +     L++S+  +  P+  F + RPGI++YG +         ++  +T  A
Sbjct: 212 ADVRARGFDPEVVHLSNSAATVTRPDLRFDMVRPGIAIYGLSPVPELGDFGLRPAMTLRA 271

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++IL++K  AGE VSYG Q     D+ +A+  +GYADG   +LSG        V LGGK 
Sbjct: 272 KVILVKKVAAGEGVSYGHQWVAPHDTTLALLPVGYADGLSRSLSG-----KFEVQLGGK- 325

Query: 301 FIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFG 338
                    +G+I MD  + D+  D   +  GD    FG
Sbjct: 326 -----RRQAVGRICMDQVLVDLGPDGDGVREGDTAIFFG 359


>gi|187779670|ref|ZP_02996143.1| hypothetical protein CLOSPO_03266 [Clostridium sporogenes ATCC
           15579]
 gi|187773295|gb|EDU37097.1| hypothetical protein CLOSPO_03266 [Clostridium sporogenes ATCC
           15579]
          Length = 397

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 176/385 (45%), Gaps = 45/385 (11%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +++L  L  N  ++          AVVK N YG G   IA  L   G     V  + E +
Sbjct: 19  EVNLDNLSYNMKNIKNKVKCKEIFAVVKANGYGHGAVDIASTLLENGATRLSVACLSEAI 78

Query: 70  KLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH--PYA 125
           +LR       I +L GI P    E II + N+ PV+ S       SK  +C  +      
Sbjct: 79  ELREGGITCPINIL-GITPSTLFEDII-NYNIEPVVFSYDYAYQLSK-AACQKNRIVKTH 135

Query: 126 LQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + VDTG  RLG+     SL+E +    N  N K+  L    SH + +D+     +  Q +
Sbjct: 136 IAVDTGMGRLGVDPTVESLEE-IKKIQNLSNIKIEGLC---SHFSSSDEKDKSYSEYQFK 191

Query: 181 RFRTLISHYKGIEAS-------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH- 230
           RF+      K IE +       +A+S+ I+  PN +    R GI LYG   + ++NK + 
Sbjct: 192 RFQHF--RKKLIEMNIKIPIHHMANSAAIIDLPNTYLDGVRAGIILYGYYPSMEVNKENL 249

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V+T +A I+ I+   +G+ V Y  + K  R S +A+  +GY DGY   LS      
Sbjct: 250 HIKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSRVAILPLGYGDGYTRFLSNR---- 305

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD-- 344
                  GK  I G   PI+G I MD  M D+TD   ++VGD   I G D    +K D  
Sbjct: 306 -------GKVIINGQYAPIIGNICMDQCMIDVTDIKEVKVGDEAIIIGKDYINNLKYDAE 358

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           D++   G T+ +++  I  R  + Y
Sbjct: 359 DISSQVGMTSGEIMSIISKRVPRVY 383


>gi|169334855|ref|ZP_02862048.1| hypothetical protein ANASTE_01261 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257593|gb|EDS71559.1| hypothetical protein ANASTE_01261 [Anaerofustis stercorihominis DSM
           17244]
          Length = 374

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 34/352 (9%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF 95
           +K NAYG G  + A AL    +  F V  + EG++LR    +  I +L   H     ++ 
Sbjct: 37  IKANAYGHGLVETAEALNKMEIYHFCVAEISEGIRLRKAGVKGEILILGYTHLSNINLVK 96

Query: 96  DTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155
             +L     +V    + S L  C ++    +++DTG +RLG   +   +       K + 
Sbjct: 97  KYDLT---QTVIDYRYASSLDECKLNIKVHIKIDTGMHRLGEHFENITNIIRILSFKNI- 152

Query: 156 QLSLIISHLACADDPSS---HVNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPN 207
            +  + SHL  +D           +Q+  F  ++     + Y  ++  +  S G+L  P+
Sbjct: 153 DVKGVFSHLCVSDSIDKKDIEFTKLQINHFNNIVKVLKENGYTNLKFHIQGSYGVLNYPD 212

Query: 208 YHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
             +   R GI+LYG     +DKI     ++ V++ +AR+ ++R+ +  E V YG   K  
Sbjct: 213 LKYDYARVGIALYGVLSKKSDKIKLDLDLKPVLSLKARVEVVRELMKNETVGYGLDFKAE 272

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFD 321
           +   IAV +IGYADG    LS               GF  I G  VPI+ +I MD    D
Sbjct: 273 KKCKIAVVSIGYADGISRKLS------------NNNGFVLINGIKVPIIARICMDQLFID 320

Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++    ++  D +   G     +I  +D+A    T   ++L R+G R  + Y
Sbjct: 321 VSKVDDVKRDDEVVFIGQSGNEEISAEDMANNLDTITNEILSRLGERLKRIY 372


>gi|321311401|ref|YP_004203688.1| alanine racemase [Bacillus subtilis BSn5]
 gi|320017675|gb|ADV92661.1| alanine racemase [Bacillus subtilis BSn5]
          Length = 394

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 181/383 (47%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L A+K N  ++   +   ++  AVVK N YG G  ++A      G  +  V SVEE
Sbjct: 10  IEVNLDAVKKNLRAIRRHIPHKSKIMAVVKANGYGHGSIEVARHALEHGASELAVASVEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PY 124
           G+ LR     A I VL        K     N+      V  +   ++++    S      
Sbjct: 70  GIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASANRLAI 129

Query: 125 ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            + VDTG  RLG+ + +E L+        K  + + I +H + AD+P + +  +Q E+F 
Sbjct: 130 HINVDTGMGRLGVRTKEELLEVVKALKASKFLRWTGIFTHFSTADEPDTTLTKLQHEKFI 189

Query: 184 TLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH--PMQT 234
           + +S  K  GIE     + +++  +  P +   + R GI LYG   +  I + +   ++ 
Sbjct: 190 SFLSFLKKQGIELPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLNLVKLEP 249

Query: 235 VVTAEARIILIRKALAGE--LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            ++ +ARI  + K +  E   VSYG       + +IA   IGYADGY   LS        
Sbjct: 250 ALSLKARIAYV-KTMRTEPRTVSYGATYIAEPNEVIATLPIGYADGYSRALS-------- 300

Query: 293 SVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDV 346
                 +GF+  +G  VP+ G++TMDM M  + ++   + G+ + I+    G +I +D+V
Sbjct: 301 -----NRGFVLHRGKRVPVAGRVTMDMIMVSLGENGEGKQGEEVVIYGKQKGAEISVDEV 355

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T NY+++  +  R  +FY
Sbjct: 356 AEMLNTINYEVVSTLSRRIPRFY 378


>gi|218903226|ref|YP_002451060.1| alanine racemase [Bacillus cereus AH820]
 gi|218535647|gb|ACK88045.1| alanine racemase [Bacillus cereus AH820]
          Length = 391

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 168/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR       I +L Y      E+ I    ++ V  S                    
Sbjct: 71  EAIELREAGINVPILILGYTSVAATEEAIQYGVMMTVYRSEDLQGINEIANRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG   + ++N S   +Q  ++
Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT 
Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|319949830|ref|ZP_08023848.1| alanine racemase [Dietzia cinnamea P4]
 gi|319436508|gb|EFV91610.1| alanine racemase [Dietzia cinnamea P4]
          Length = 409

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 179/380 (47%), Gaps = 32/380 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL A+++N   +   +  AR  AVVK +AYG G   ++ A    G     VT++ E
Sbjct: 11  RAEIDLDAIEHNSRVLVRSARGARVMAVVKADAYGHGAVPVSLAALRGGAHALGVTTIAE 70

Query: 68  GVKLRLYTPQARIFV-LYGIHPG-QEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPY 124
            ++LR     A I   LY +    +  +  D +L   I S   L T        G     
Sbjct: 71  ALQLRSAGIDAEILAWLYSVSDDVRAAVEADVDL--AIPSPAHLDTVLEAARRTGRRARV 128

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             ++DTG  R G+SL+E    L+    +    L +++ +++H A ADDP + V  +Q+ R
Sbjct: 129 TPKIDTGLARSGISLEEWPAVLERLVTATAGGLVEVTGLMAHFAHADDPGNPVIDLQVAR 188

Query: 182 FRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
               +     +G++  +   A+S+  L  P   F++ RPGI+LYG          +   +
Sbjct: 189 LHECVGQARGRGLDCPVNHHANSAATLTRPEDGFEMVRPGIALYGLNPVEGLEVDLVPAM 248

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSPSVF 295
           T  A ++++++  AG+ VSYG       D+ +A+ A GYADG    LSG LD      V 
Sbjct: 249 TFSAEVLMVKRLAAGQGVSYGHTWHAPHDTTVALIAAGYADGVWRLLSGRLD------VS 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDI--TDSLSIEVGDYIQIFGPDIK----LDDVALA 349
           +GG+ +      P +G++ MD  + D+      ++ VGD   +FG          + A  
Sbjct: 303 IGGRRY------PNVGRVCMDQFVVDLGPDPGQAVRVGDTAVLFGTGADGGPTAAEWAET 356

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y+++  +  R A+ +
Sbjct: 357 LGTIHYEVVTAVRGRAARHH 376


>gi|296330975|ref|ZP_06873450.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674493|ref|YP_003866165.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151980|gb|EFG92854.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412737|gb|ADM37856.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 394

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 181/383 (47%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L A+K N  ++   +   ++  AVVK N YG G  ++A      G  +  V SVEE
Sbjct: 10  IEVNLDAIKKNLRAIRRHIPHKSKIMAVVKANGYGHGSVEVARHALEHGASELAVASVEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PY 124
           G+ LR     A I VL        K     N+      V  +   ++++    S      
Sbjct: 70  GIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASTDRLAI 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            + VDTG  RLG+  ++ L     +    K  + + I +H + AD+  + +  +Q E+F 
Sbjct: 130 HINVDTGMGRLGVRTKKELLAVVKALKASKSLRWTGIFTHFSTADEADTTLTKLQHEKFI 189

Query: 184 TLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH--PMQT 234
           + +S  K  GIE     +++++  +  P +   + R GI LYG   +  I + +   ++ 
Sbjct: 190 SFLSFLKNQGIELPTVHMSNTAAAIAFPEFSADMIRLGIGLYGLYPSTYIKQLNLVKLEP 249

Query: 235 VVTAEARIILIRKALAGE--LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            ++ +ARI  + K +  E   +SYG       D +IA   IGYADGY  TLS        
Sbjct: 250 ALSLKARIAYV-KTMRTEPRTISYGATYIAEPDEVIATLPIGYADGYSRTLS-------- 300

Query: 293 SVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDV 346
                 +GF+  +G  VP+ G++TMDM M  + +S   + GD + I+    G +I +D+V
Sbjct: 301 -----NRGFVLHRGKRVPLAGRVTMDMIMVSLGESGEGKQGDEVVIYGQQKGAEISVDEV 355

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T NY+++  +  R  +FY
Sbjct: 356 AEMLNTINYEVVSTLSRRIPRFY 378


>gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 823

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 172/374 (45%), Gaps = 31/374 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL A+ +N+    + L+   +   +VK + YG G  ++A  L         V   EE
Sbjct: 465 LDVDLDAIVHNFKFYRSKLNPKTKMICMVKADGYGTGSSEVAKTLQYHKCDYLAVAVAEE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVS-HPYA 125
           GV LR    +  I VL     G E++    +L P + +   L  F  +    G++ +P  
Sbjct: 525 GVILRKQGIKVPIIVLNSEVGGFEELA-TYSLEPEVYNFRILDAFIKEAKLQGITNYPIH 583

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +RLG + ++  +       +   ++  + SHLA ++  S + +   L++ +T 
Sbjct: 584 IKIDTGMHRLGFTEEDIPELMDRVKGQTGVRIQSVFSHLAASE--SWNFDDFTLQQIKTF 641

Query: 186 ISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
                 +E S        + +S+GI   P     + R GISLYG +   +  + ++ V T
Sbjct: 642 KKIAGEVEDSCHYPVMKHILNSAGIERFPEEQLDMVRLGISLYGVS--ASGLNGLRNVCT 699

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I+ I+   AGE V YG +     D+ IA   IGYADG                F  
Sbjct: 700 LKTTILQIKHIKAGETVGYGRKGHFDHDATIATIRIGYADGISRQ------------FGN 747

Query: 298 GKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G G   + GY V I+G I MD+TM D+T  + ++ GD + IFG ++ + D+A    T  Y
Sbjct: 748 GVGVVLVNGYQVSIVGNICMDLTMIDVT-GIEVKEGDIVTIFGENLPVTDLAKKINTIPY 806

Query: 356 DLLVRIGTRYAKFY 369
           ++   I  R    Y
Sbjct: 807 EIFTSISNRVKHIY 820


>gi|303231043|ref|ZP_07317785.1| alanine racemase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514307|gb|EFL56307.1| alanine racemase [Veillonella atypica ACS-049-V-Sch6]
          Length = 370

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 167/378 (44%), Gaps = 31/378 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L ID + ++ N   + ++L   + + AV+K N YG G   +       G +   V   EE
Sbjct: 6   LTIDTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVAIPEE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--- 124
            V LR       I++L    P   +++ DTN IP +     L   +K+     +H     
Sbjct: 66  SVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALNKVAD---NHDMIIR 122

Query: 125 -ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            A+ VDTG +R+G+  + A++F     +     +    SH++ AD         Q ++F 
Sbjct: 123 VAVAVDTGMHRIGIKPENAVEFIKRIESYPNLAVDGFFSHMSNADAADQSHAHGQAQKFH 182

Query: 184 TLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTV 235
            ++   +          SLA+S+G+L   +  F   RPGI  YG    ++  +   ++ V
Sbjct: 183 KMVDEIRAFRPDADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKPV 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + ++ ++   AGE + YG          IA   +GYADGYP +LS           
Sbjct: 243 LSFHSEVVHVQHLEAGEGIGYGSTYVTPEPMTIATIPVGYADGYPRSLSNR--------- 293

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
             G   I+G   P++G+I MD  M  I D+++++ GD + + G      I   ++A  + 
Sbjct: 294 --GTVLIQGTRCPVVGRICMDQFMVAIPDTITVKPGDKVVLLGSQGHESISALEIAALAS 351

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++      R  + Y
Sbjct: 352 TIPYEIFCGFSDRVPRQY 369


>gi|296135085|ref|YP_003642327.1| alanine racemase [Thiomonas intermedia K12]
 gi|295795207|gb|ADG29997.1| alanine racemase [Thiomonas intermedia K12]
          Length = 367

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 176/372 (47%), Gaps = 37/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL +N   +   +  ++  AVVK NAYG G  +   AL  A    F +  + E  K
Sbjct: 9   IHTAALSHNLLRVRQATPASKVWAVVKANAYGHGIARAYSALRTA--DGFALLDLAEAEK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G    ++  + +  NL  V+    Q+ + + +     +H   L+++
Sbjct: 67  LRALGWVGPILLLEGCFAPEDLALCERLNLWHVVHCREQIDWLA-VHRGNRTHRVFLKMN 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           TG NR+G S  EA        N   ++G+++ + +H ACAD+ S    +  L RF   + 
Sbjct: 126 TGMNRVGFS-PEAYAAAWERLNALPQVGEITHM-THFACADEASGIDEA--LARFARGVG 181

Query: 188 HYKGIEASLASSSGILL---GPNYHFQLTRPGISLYGGTD---KINKSH-PMQTVVTAEA 240
           H  G E +LA+S+ +L+    P       RPGI+LYG +     ++ +H  ++  ++  +
Sbjct: 182 HLPG-ERTLANSAAVLVHGADPRVATDWVRPGIALYGSSPTGLALDAAHWKLRPAMSLRS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I I+   AGE V YG +    R   I V A GYADGYP          +P+   G   
Sbjct: 241 ELIDIQHIAAGECVGYGARFTAPRPMRIGVVACGYADGYPRV--------APN---GTPI 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSI----EVGDYIQIFGPD----IKLDDVALASGT 352
            + G    ++G+++MDM   D+    +      +G  + ++G D    + +D+VA A+GT
Sbjct: 290 VVDGVRTQLVGRVSMDMITVDLEPVFAAGNRPMIGSPVLLWGQDAQAELSIDEVAAAAGT 349

Query: 353 TNYDLLVRIGTR 364
             Y+L+  +  R
Sbjct: 350 LGYELMCALAQR 361


>gi|70725962|ref|YP_252876.1| alanine racemase 1 [Staphylococcus haemolyticus JCSC1435]
 gi|68446686|dbj|BAE04270.1| alanine racemase 1 [Staphylococcus haemolyticus JCSC1435]
          Length = 382

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 182/385 (47%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S++F R   L +DL+A+ NN++++  L  +     VVK N+YGLG  KIA  L   G   
Sbjct: 2   SDKFYRSTYLNVDLSAILNNYNTVRTLHSDKTVIPVVKANSYGLGSVKIAQHLMKNGADF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS---KLM 116
           F V +++E ++LR++   A+I +L G+ P ++  I       V  +VP L +     +L+
Sbjct: 62  FAVATLDEAIELRMHGINAQILIL-GVIPLED--INKAIQHRVALTVPSLQWLQHAIELI 118

Query: 117 SCGVSHPYALQV--DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           S        L V  DTG  RLG+ SL+E  +      +        + +H A AD+P   
Sbjct: 119 SDDNEKNLWLHVKLDTGMGRLGIKSLEEYKEVIDLIQSHPHLVFEGVYTHFANADEPGDL 178

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKINKSHPM 232
           ++  Q E+F TL++  +  +   + +S   L  N+      R GISLYG          +
Sbjct: 179 MDH-QYEQFETLVTQAEKPKFIHSQNSAGSLLRNFELCNAVRLGISLYGYYPSAYVKEKV 237

Query: 233 QTVVTAEA----RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +T +   A    +++  +    GE VSYG     T D  IA+  IGYADGY  ++ G   
Sbjct: 238 ETELQPSAQLLTQVVQTKYLKVGESVSYGSTFTATEDIKIAILPIGYADGYLRSMQG--- 294

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI----FGPDIKLD 344
                 F+     +KG+   ++G++ MD  +  + D   ++ GD + +    +      +
Sbjct: 295 -----AFVN----VKGHQCEVIGRVCMDQMIIKVPD--DVKEGDSVTLLDNAYDSPQSAE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            +A    T +Y++L  +G R  + Y
Sbjct: 344 TLAQKQDTISYEVLCNLGRRLPRIY 368


>gi|304386876|ref|ZP_07369138.1| alanine racemase [Neisseria meningitidis ATCC 13091]
 gi|304339035|gb|EFM05127.1| alanine racemase [Neisseria meningitidis ATCC 13091]
          Length = 352

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 175/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+      P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLVRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|312140864|ref|YP_004008200.1| alanine racemase [Rhodococcus equi 103S]
 gi|311890203|emb|CBH49521.1| putative secreted alanine racemase [Rhodococcus equi 103S]
          Length = 414

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 180/388 (46%), Gaps = 52/388 (13%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+  N   +   +G A   AVVK +AY  G   +A A   AG  +  VT++ EG++
Sbjct: 42  IDLDAVAYNIGILREHAGGATVMAVVKADAYNHGAVPVARAALAAGAGELGVTTLAEGLE 101

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK---------LMSC 118
           L+   +  P     VL  +H        D++  P +++  +L   S              
Sbjct: 102 LKNAGITAP-----VLSWLH------TADSDFAPAVAAGVELGLSSPRHLAAVAAAARQV 150

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSL--IISHLACADDPSSHVN 175
           G +    ++VDTG NR G+S +E  DF  + +  +  G +    + SHLA AD+P   V 
Sbjct: 151 GTAATVTVKVDTGLNRNGVSREEWTDFLKDLARVEAEGAVRFKGVFSHLAHADEPHHPVI 210

Query: 176 SVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KS 229
             Q ERF + +   + I      A L++S+  L  P+  F + RPGI++YG +   +  +
Sbjct: 211 DDQRERFTSALEDAERIGLVPEAAHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPDLGT 270

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T  +R+ L++K  AGE VSYG       D+ +A+  +GYADG P  L G    
Sbjct: 271 FGLRPVMTFRSRVALVKKVAAGEGVSYGHTWVAPHDTTVALLPVGYADGIPRALGG---- 326

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIKLD---- 344
               V+LG          P +G++ MD  + D+  D   +  GD    FG D   D    
Sbjct: 327 -RFEVWLGDD------RRPGIGRVCMDQVVVDLGPDGAGVREGDTAVFFG-DGDGDRGVP 378

Query: 345 ---DVALASGTTNYDLLVRIGTRYAKFY 369
              D A A  T +Y+++  +  R  + Y
Sbjct: 379 HAQDWADALDTIHYEVVTSVRGRTIRTY 406


>gi|323487115|ref|ZP_08092423.1| hypothetical protein HMPREF9474_04174 [Clostridium symbiosum
           WAL-14163]
 gi|323694622|ref|ZP_08108788.1| alanine racemase [Clostridium symbiosum WAL-14673]
 gi|323399616|gb|EGA92006.1| hypothetical protein HMPREF9474_04174 [Clostridium symbiosum
           WAL-14163]
 gi|323501390|gb|EGB17286.1| alanine racemase [Clostridium symbiosum WAL-14673]
          Length = 393

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 166/376 (44%), Gaps = 30/376 (7%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  +  N  +M A L        VVK + YG G   +A A+ +  V  + V +VEEG
Sbjct: 11  EINLDNIIKNMETMAAGLPSGTGIIGVVKTDGYGHGAVPVAKAI-DPFVCGYAVAAVEEG 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
           + LR +     + +L   H    K + D ++ P +    +    SK  +  G +    + 
Sbjct: 70  IILRKHKITKPVLILGSTHERYFKELLDYDIRPALYEYSKAEKLSKTAVKEGKTAKIHIA 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +R+G    EA        +   G ++  + +H + AD+       +Q  R+    
Sbjct: 130 LDTGMSRIGFQPGEASVREVERIHTLPGIRIEGLFTHFSKADESDKDFTELQYRRYMEFN 189

Query: 187 SHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
              K  GIE  +   A+S+ I+  P       R GIS+YG   +D++N+  P+   +   
Sbjct: 190 DALKQRGIEIPVRHCANSAAIMDLPQMGLDAVRAGISMYGIYPSDEVNREMPLYPAMEIR 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G  VSYGG     R   IA  + GY DGYP +LS             GK
Sbjct: 250 SFVTCVKDIEPGTSVSYGGTFTAKRRMRIATISAGYGDGYPRSLS-------------GK 296

Query: 300 GF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G+  I+G   PILG++ MD  M D+TD       D   + G D    + ++ +A   G  
Sbjct: 297 GYVLIRGRRAPILGRVCMDQFMVDVTDIPGAAEEDRATLAGRDRDEMLSMERLADLCGGF 356

Query: 354 NYDLLVRIGTRYAKFY 369
            Y++   +G R  + Y
Sbjct: 357 RYEIPCVLGKRVPRVY 372


>gi|301301060|ref|ZP_07207220.1| alanine racemase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851330|gb|EFK79054.1| alanine racemase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 371

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 171/380 (45%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  I L A+K+N  + ++ L       AVVK NAYG G   +A A   AG   F V  ++
Sbjct: 10  RAIISLEAIKHNVATQISKLKDGQSLFAVVKANAYGHGMIPVAKAAKEAGANGFCVAIID 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLM-SCGVSHPY 124
           EG+ LR    +  I +L G++P  E +    + + V + ++  LT   KL+     S   
Sbjct: 70  EGIALRESGIKDPILIL-GVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEKQSLKI 128

Query: 125 ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178
            L +DTG  R+G      L+EA+DF      K   QL    I +H + AD         Q
Sbjct: 129 HLALDTGMGRIGFRNTEDLKEAVDF----IEKHSDQLKCEGIFTHFSTADSKDPAYFEKQ 184

Query: 179 LERFRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
            ++F  L+   K     +  A+S+  L  PN+   L R GIS+YG     D I+++  ++
Sbjct: 185 SQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDVIDETWNLE 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ ++ +++   G  + YG     ++   I    IGYADG+   + G        
Sbjct: 245 PALSLESELVAVKEVEVGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                K  I G    I+G++ MD  M  +      ++G  + + G +    I   DVA  
Sbjct: 298 -----KVLIDGQYCEIVGRVCMDQFMVRLPKKY--DLGTKVTLIGENNGKVITAQDVANY 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T +Y+++  I  R  + Y
Sbjct: 351 ADTIHYEIMCNITERVPRIY 370


>gi|317011147|gb|ADU84894.1| alanine racemase [Helicobacter pylori SouthAfrica7]
          Length = 377

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 187/388 (48%), Gaps = 44/388 (11%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D ++L++N++++ NA+  +    AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVDTSSLRHNFNAVKNAIPKDTHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR + P+  I +L G  P    +++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRFHFPKTPILIL-GYSPNSNAQMLVDNHLSAMIFSLEQAEIFSQIALKSKKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-----QLSLIISHLACAD-DPSSHVNSVQL 179
           L++DTG +RLGL      +F      KK+      ++  I +HL+ AD +  +H  + Q+
Sbjct: 127 LKIDTGMHRLGLE----PNFKSVEIIKKIRALKGLEVEGIFTHLSNADANIKTHAKN-QM 181

Query: 180 ERFRTLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINK 228
           + F   +     + IE       +S+GIL       N    L RPGI LYG   ++++ +
Sbjct: 182 KAFNAFLEQLLDQKIEFQYRHAYNSAGILSLCNNNENRFLNLYRPGIMLYGFYPSNEMKE 241

Query: 229 SHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           S P  ++ VV+ +A+I+ I++   GE V YG       ++L+ V A+GYADG    L   
Sbjct: 242 SCPTILKNVVSLKAQIVQIKRVKKGEFVGYGKHFYTNEETLVGVLALGYADGLARALGNR 301

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----K 342
                       +  I   + P++ K+ MD     + D +  + GD + +FG        
Sbjct: 302 I-----------QVVINNQLAPLIAKVCMDQCFIKL-DGIEAKEGDEVILFGDKSTRAND 349

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFYT 370
            +++A    T  Y+++  +  R  + Y 
Sbjct: 350 ANEIATLLNTIPYEVISTLSKRLERVYA 377


>gi|121635291|ref|YP_975536.1| alanine racemase [Neisseria meningitidis FAM18]
 gi|166969422|sp|A1KV59|ALR_NEIMF RecName: Full=Alanine racemase
 gi|120866997|emb|CAM10760.1| alanine racemase [Neisseria meningitidis FAM18]
 gi|254669582|emb|CBA03582.1| Alanine racemase [Neisseria meningitidis alpha153]
 gi|254672097|emb|CBA04784.1| Alanine racemase [Neisseria meningitidis alpha275]
 gi|325133023|gb|EGC55697.1| alanine racemase [Neisseria meningitidis M6190]
 gi|325138687|gb|EGC61240.1| alanine racemase [Neisseria meningitidis ES14902]
 gi|325142822|gb|EGC65192.1| alanine racemase [Neisseria meningitidis 961-5945]
 gi|325198750|gb|ADY94206.1| alanine racemase [Neisseria meningitidis G2136]
          Length = 352

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 175/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYQILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+      P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLIRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|228920796|ref|ZP_04084136.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|229190195|ref|ZP_04317198.1| Alanine racemase [Bacillus cereus ATCC 10876]
 gi|228593312|gb|EEK51128.1| Alanine racemase [Bacillus cereus ATCC 10876]
 gi|228838907|gb|EEM84208.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 408

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 146

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|206972055|ref|ZP_03233003.1| alanine racemase [Bacillus cereus AH1134]
 gi|206732978|gb|EDZ50152.1| alanine racemase [Bacillus cereus AH1134]
          Length = 391

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 71  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 129

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 190 AVNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|194014730|ref|ZP_03053347.1| alanine racemase [Bacillus pumilus ATCC 7061]
 gi|194013756|gb|EDW23321.1| alanine racemase [Bacillus pumilus ATCC 7061]
          Length = 393

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 178/399 (44%), Gaps = 69/399 (17%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L A+K N  ++ A +   ++  AVVK NAYG G  ++A     +G  +  V S+EE
Sbjct: 10  IEVNLDAIKRNIEAIQAHIPRKSKIMAVVKANAYGHGSVEVARQALESGATELAVASLEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPG----------------QEKIIFDTNLIPVISSVPQLTF 111
           G+ LR    +A I VL G  P                 +E  I + N I        L  
Sbjct: 70  GIVLRRAKIEAPILVL-GFTPLDCVKRAAAWRIDLSGLREDWIVEANEI--------LAE 120

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDP 170
                  G+     + VDTG  RLG+  +E L     +  K    +   I +H + AD+P
Sbjct: 121 EESQRRLGIH----VNVDTGMGRLGVRTKEELLGVVEALEKSENLRWDGIFTHFSTADEP 176

Query: 171 SSHVNSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
                 +Q   F   +   K  GI+     + +++  ++ P +   + R GI LYG    
Sbjct: 177 DPDFTQLQHSIFIDFLRFLKKRGIKLPTVHMNNTAAAIVFPEFSADMIRLGIGLYGLYPS 236

Query: 222 ----GTDKINKSHPMQTVVTAEARIILIRKALAG-ELVSYGGQKKLTRDSLIAVAAIGYA 276
                 D +     ++  ++ +ARI  +++ +     VSYG       D +IA   IGYA
Sbjct: 237 QYIESLDAVQ----LEPALSLKARIAFVKEMVTKPRTVSYGATYVAKPDEVIATIPIGYA 292

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
           DGY   LS              +GF+  +G  +PI G++TMDMTM  + + +  + G+ +
Sbjct: 293 DGYSRALS-------------NRGFMLFRGKRMPIAGRVTMDMTMISLGE-MKAKQGEEV 338

Query: 335 QIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I+G     +I +D++A    T NY+++  +  R  +FY
Sbjct: 339 VIYGRQKGGEISVDEIAEMLNTINYEVIATLSRRVPRFY 377


>gi|169346950|ref|ZP_02865898.1| alanine racemase [Clostridium perfringens C str. JGS1495]
 gi|169297009|gb|EDS79133.1| alanine racemase [Clostridium perfringens C str. JGS1495]
          Length = 386

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 169/390 (43%), Gaps = 57/390 (14%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  + E  
Sbjct: 11  EIDLDIIANNMKEIRTLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAIITEAD 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---YSKLMS-----CGVS 121
           +LR     A I +L     G   I F  NLI   + + Q  +   Y+K +S      G  
Sbjct: 71  ELRDAGITAPIMIL-----GYTPINFAENLIN--NEIEQTVYDVEYAKELSDFALKLGKK 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-------IISHLACADDPSSHV 174
               + +DTG  R+G    E         NK L   SL       + +H + +D+     
Sbjct: 124 AKIHIAIDTGMGRIGFLPNE------EGLNKVLEICSLPGVEVVGLFTHFSTSDEKDK-- 175

Query: 175 NSVQLERFRTLISHYKGIEAS-------LASSSGILLG-PNYHFQLTRPGISLYG--GTD 224
            +   E+F  L +  K +E +        AS+SG ++  P  +    R GI  YG   ++
Sbjct: 176 -TYTYEQFSKLTAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSE 234

Query: 225 KINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           ++ K +  ++  +T +  +  +++      VSYG   K  + S IA   IGYADGY   L
Sbjct: 235 EVKKENLKLKPALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLL 294

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--I 341
           SG             K  IKG    ++G++ MD  M D+T    +++GD + + G +  +
Sbjct: 295 SG-----------KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGL 343

Query: 342 KLD--DVALASGTTNYDLLVRIGTRYAKFY 369
           K D  D+A   GT NY++L  I  R  + Y
Sbjct: 344 KFDANDMAEIMGTINYEILCMISHRVPRIY 373


>gi|160936433|ref|ZP_02083802.1| hypothetical protein CLOBOL_01325 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440716|gb|EDP18454.1| hypothetical protein CLOBOL_01325 [Clostridium bolteae ATCC
           BAA-613]
          Length = 374

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 155/345 (44%), Gaps = 23/345 (6%)

Query: 6   FLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           + ++ IDL  +  N+  + + L       AVVK +AYGLG   IA  L  AG   F VT 
Sbjct: 3   YTQMDIDLDVIAENYKKVSDRLPEETGIIAVVKADAYGLGAVPIAKKLEKAGCPMFAVTF 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHP 123
           +EE VKLR    +A I V+      +  I     LI  I+        S +L+    S P
Sbjct: 63  MEEAVKLREAGIKAPILVMMPAESKELLIAGKHKLIITITDYEMAKQISDELVKQSYSLP 122

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSL--IISHLACADDPSSH--VNSV 177
             L+VD G +R+G+ L++ L+       K   L  L+   + SHL  A    ++  ++  
Sbjct: 123 AHLKVDCGLSRMGIVLKDRLEEAAEEAAKIHALPNLNTEAVFSHLTAAGTEGAYAALDLA 182

Query: 178 QLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           + +RF  LI   K     I+  L SS   +  P       R G  LYG   +      ++
Sbjct: 183 EQQRFFELIKMLKKKNISIKTHLMSSDPYIWYPQTPGDYIRVGSILYGICPERYSCCGIK 242

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++    I+ I+       VSYG   +  R + IAV  +G+ADG    LS         
Sbjct: 243 NCMSMNTYIVQIKWIPRDTEVSYGPLYRTVRRTKIAVVPVGFADGIRRALSN-------- 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
               G+  I G  VPI+GKI  D T+ D+TD   ++VGD + IFG
Sbjct: 295 ---KGEMLIHGKRVPIIGKICCDHTILDVTDIEEVKVGDEVTIFG 336


>gi|308172332|ref|YP_003919037.1| D-alanine racemase [Bacillus amyloliquefaciens DSM 7]
 gi|307605196|emb|CBI41567.1| D-alanine racemase [Bacillus amyloliquefaciens DSM 7]
 gi|328552144|gb|AEB22636.1| alanine racemase [Bacillus amyloliquefaciens TA208]
 gi|328910417|gb|AEB62013.1| D-alanine racemase [Bacillus amyloliquefaciens LL3]
          Length = 389

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 170/384 (44%), Gaps = 30/384 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M++  F R    +I+L+A+K N  H    +  N    AVVK NAYG G  ++  A   AG
Sbjct: 1   MNTASFYRDTWAEINLSAIKENITHMKKHIGENVHLMAVVKANAYGHGDLEVGKAALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL  + P   +   + ++     SV  L   ++ +
Sbjct: 61  ASCLAVAILDEAISLRKRGITAPILVLGAVPPEYVQAAAEYDVTLTGYSVEWLQEAARHL 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVN 175
                 P+ L+VDTG NRLG+  +E +       ++  G +   + +H A AD+ +    
Sbjct: 121 GSETV-PFHLKVDTGMNRLGVKTEEEIQSVLKILSQNPGLVCKGVFTHFATADEKNRDYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
             Q ERF+ LI+    K +    A+S+  L      F   R GIS+YG   +  I    P
Sbjct: 180 LFQFERFKKLIAPLPLKELMVHCANSAAGLRLKKGFFNAVRFGISMYGLRPSADIQNEIP 239

Query: 232 MQ--TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            Q     T  + +  ++K   GE VSYG      +D  I    IGYADG+   LSG    
Sbjct: 240 FQLKPAFTLHSVLSHVKKIRKGESVSYGATYTAEKDQWIGTVPIGYADGWLRKLSGT--- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
              +V + GK       + I G+I MD  M ++  S     G  + + G      I +D+
Sbjct: 297 ---AVLIDGK------RMNIAGRICMDQLMVELDQSYP--PGTKVTLIGSQKEETITMDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY++   I +R  + +
Sbjct: 346 IAGRLETINYEIPCTISSRVPRMF 369


>gi|23100681|ref|NP_694148.1| D-alanine racemase [Oceanobacillus iheyensis HTE831]
 gi|50897490|sp|Q8ELK1|ALR2_OCEIH RecName: Full=Alanine racemase 2
 gi|22778915|dbj|BAC15182.1| D-alanine racemase [Oceanobacillus iheyensis HTE831]
          Length = 392

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 163/374 (43%), Gaps = 27/374 (7%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ L A+ +N  +  N +  + +  AVVK + YG G  ++A     AG     V  ++E 
Sbjct: 12  EVSLDAIHHNVTAFKNHIDHHTKLMAVVKADGYGHGAVEVAQEALTAGADYLAVAILDEA 71

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI---SSVPQLTFYSKLMSCGVSHPYA 125
           ++LR     A + VL   HP   K   +  +   +       Q+   ++L+         
Sbjct: 72  IQLRDAGIDAPLLVLGYTHPDGLKTAIEQQITLTVFTKEDAEQVKIAAELLQKTAR--IH 129

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++++G NR+G++ +E       + +     L    +H A AD+       +Q  RF  +
Sbjct: 130 LKIESGMNRIGIATKEEAVEIAKALHSSFVMLEGAFTHFADADNTDPTYTEMQFHRFNQI 189

Query: 186 ISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
           ISH +           +++  +  P+ H  + R GI +YG      + +   ++  ++ +
Sbjct: 190 ISHLRTHCHIPIVHCCNTAATIAYPDMHLDMVRVGIGIYGLYPETHLKELIDLKQAMSLK 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            + + I+       +SYG      R S IA   IGYADG+   LS             G 
Sbjct: 250 TKPVYIKTVDQDTAISYGLTFTTERKSTIATMPIGYADGFSRLLSNR-----------GD 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             +     PI+G+I MD +M D+TD  ++ + D I IFG      I +++VA   GT +Y
Sbjct: 299 VIVHAGRAPIVGRICMDQSMIDVTDVENVGLDDVITIFGEPTEGYIAMEEVANLMGTIHY 358

Query: 356 DLLVRIGTRYAKFY 369
           +    IG R  + Y
Sbjct: 359 ETACLIGKRVPRIY 372


>gi|30020200|ref|NP_831831.1| alanine racemase [Bacillus cereus ATCC 14579]
 gi|228962874|ref|ZP_04124117.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229079274|ref|ZP_04211819.1| Alanine racemase [Bacillus cereus Rock4-2]
 gi|229109560|ref|ZP_04239150.1| Alanine racemase [Bacillus cereus Rock1-15]
 gi|229127502|ref|ZP_04256494.1| Alanine racemase [Bacillus cereus BDRD-Cer4]
 gi|229144707|ref|ZP_04273107.1| Alanine racemase [Bacillus cereus BDRD-ST24]
 gi|29895750|gb|AAP09032.1| Alanine racemase [Bacillus cereus ATCC 14579]
 gi|228638759|gb|EEK95189.1| Alanine racemase [Bacillus cereus BDRD-ST24]
 gi|228655959|gb|EEL11805.1| Alanine racemase [Bacillus cereus BDRD-Cer4]
 gi|228673896|gb|EEL29150.1| Alanine racemase [Bacillus cereus Rock1-15]
 gi|228704024|gb|EEL56465.1| Alanine racemase [Bacillus cereus Rock4-2]
 gi|228796804|gb|EEM44171.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 408

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 146

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|284048796|ref|YP_003399135.1| alanine racemase [Acidaminococcus fermentans DSM 20731]
 gi|283953017|gb|ADB47820.1| alanine racemase [Acidaminococcus fermentans DSM 20731]
          Length = 389

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 168/382 (43%), Gaps = 40/382 (10%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL AL  N+H +    G   +   VVK +AYG G  ++   L   G     V+S++E 
Sbjct: 11  EIDLDALAYNYHKIREHIGPQVKFLGVVKADAYGHGAVQVGSHLQALGANYLAVSSIDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           ++LR       I +L G  P ++  ++I       V      L +  + +  G +    +
Sbjct: 71  MELRFNGITMPILIL-GHTPREQVDRLICFNITQAVTCEAKALEYSEEAVKYGGTLKIHV 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-------IISHLACADDPSSHV---NS 176
           +VDTG +RLG   +   D+  +     +   SL       I +H A AD+P         
Sbjct: 130 KVDTGMSRLGYICEG--DYFEHGVEGIIHACSLPGLEPEGIFTHFAVADEPGEDALAYTR 187

Query: 177 VQLERFRTL---ISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            Q   FR +   +    G +  L   A++    L P+ +  + RPG+ LYG  +   +  
Sbjct: 188 HQFALFRKVCDEVEKRTGKKFKLRHCANTGATTLFPDTYLDMVRPGLLLYGYGEH-ARML 246

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS-- 288
            ++ V+T +  I  I+    G  +SYGG       + + VA IGYADG+   LS   S  
Sbjct: 247 GLKPVMTVKTTISTIKIYPKGTKISYGGIYTCPDTTRMGVAPIGYADGFMRCLSNRCSFV 306

Query: 289 -EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
            E  P+              P  G+I MDM M D+T    ++VG  +++FG    LDD+A
Sbjct: 307 TEEGPA--------------PQRGRICMDMCMVDLTGKPKVDVGSELELFGTRQSLDDLA 352

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             +GT  Y++   I  R  + Y
Sbjct: 353 QLAGTIPYEITCNISKRVPRVY 374


>gi|255280965|ref|ZP_05345520.1| alanine racemase [Bryantella formatexigens DSM 14469]
 gi|255268413|gb|EET61618.1| alanine racemase [Bryantella formatexigens DSM 14469]
          Length = 390

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 177/383 (46%), Gaps = 41/383 (10%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFFVTS 64
           +IDL A+  N+ SM+  +  +A   AV+K + YG G   IA    P  Y  G   F V +
Sbjct: 10  EIDLDAIAYNFESMHRNIHPSAGMIAVIKADGYGHGAVPIARLAEPLDYIWG---FAVAT 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI---SSVPQLTFYS-KLMSCGV 120
            EE ++LR    +  + +L  +     + +   ++ PV+   S   QL+  + +     V
Sbjct: 67  AEEALQLRTAGIKKPVLILGYVFEEHYEELIRADIRPVVFKLSMAEQLSKEAVRQQKNAV 126

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178
            H   + +DTG  R+G     A          +L  + +  I +H A AD+        Q
Sbjct: 127 IH---IGLDTGMTRIGFPCT-AESLLEIMLISRLPNIKIEGIFTHFARADETDKTSAQNQ 182

Query: 179 LERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH- 230
           LE F         KG++  L   ++S+GI+  P  +  L R GIS+YG   ++++ K + 
Sbjct: 183 LEHFLKFTDSLKEKGVDIPLRHCSNSAGIIDMPYANLNLVRAGISIYGIYPSEEVCKENV 242

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P++  +  ++ I L+++  AG  VSYGG     R + IA   +GYADGYP  LS      
Sbjct: 243 PLKPAMALKSHITLVKEVEAGVAVSYGGTFVTKRKTRIATIPVGYADGYPRLLSNR---- 298

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                  G+  I G   PILG++ MD  M D+T+    +  D + + G D    + ++++
Sbjct: 299 -------GRVLIHGKSAPILGRVCMDQFMVDVTEIPQAQELDAVTLLGEDGESVLSVEEL 351

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
              SG   Y+ +  I  R  + Y
Sbjct: 352 GGLSGRFPYEFVCDISKRVPRVY 374


>gi|313893858|ref|ZP_07827424.1| alanine racemase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441422|gb|EFR59848.1| alanine racemase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 374

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 171/379 (45%), Gaps = 33/379 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+ + ++ N   + ++L   + + AV+K N YG G   +       G +   V   EE
Sbjct: 10  LTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVAIPEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--- 124
            V LR       I++L    P   +++ DTN IP +     L    K+     +H     
Sbjct: 70  SVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLDALDKVAD---NHDMIIR 126

Query: 125 -ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF 182
            A+ VDTG +R+G+  ++A++F     + +  ++    SH++ AD    +H +S Q  +F
Sbjct: 127 IAVAVDTGMHRIGIKPEDAVEFIKRVESYENLEVDGFFSHMSNADAADQTHAHS-QAMKF 185

Query: 183 RTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
             ++   K          SLA+S+G+L   +  F   RPGI  YG    ++  + +  + 
Sbjct: 186 HRMVDEIKAFRPNADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + ++ ++   AGE + YG          IA   +GYADGYP +LS          
Sbjct: 246 VLSFHSEVVHVQHVPAGEGIGYGSTYVTPEPMTIATIPVGYADGYPRSLSNR-------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I G   P++G+I MD  M  + D+++++ GD + + G      I   ++A  +
Sbjct: 298 ---GTVLIHGTRCPVVGRICMDQFMVAVPDTITVKPGDKVVLLGSQGHESISALEIAALA 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++      R  + Y
Sbjct: 355 STIPYEIFCGFSERVPRQY 373


>gi|168207630|ref|ZP_02633635.1| alanine racemase [Clostridium perfringens E str. JGS1987]
 gi|168209161|ref|ZP_02634786.1| alanine racemase [Clostridium perfringens B str. ATCC 3626]
 gi|168216261|ref|ZP_02641886.1| alanine racemase [Clostridium perfringens NCTC 8239]
 gi|170661037|gb|EDT13720.1| alanine racemase [Clostridium perfringens E str. JGS1987]
 gi|170712680|gb|EDT24862.1| alanine racemase [Clostridium perfringens B str. ATCC 3626]
 gi|182381967|gb|EDT79446.1| alanine racemase [Clostridium perfringens NCTC 8239]
          Length = 386

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 169/390 (43%), Gaps = 57/390 (14%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  + E  
Sbjct: 11  EIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAIITEAD 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---YSKLMS-----CGVS 121
           +LR     A I +L     G   I F  NLI   + + Q  +   Y+K +S      G  
Sbjct: 71  ELRDAGITAPIMIL-----GYTPINFAENLIN--NEIEQTVYDVEYAKELSDFALKLGKK 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-------IISHLACADDPSSHV 174
               + +DTG  R+G    E         NK L   SL       + +H + +D+     
Sbjct: 124 AKIHIAIDTGMGRIGFLPNE------EGLNKVLEICSLPGVEVVGLFTHFSTSDEKDK-- 175

Query: 175 NSVQLERFRTLISHYKGIEAS-------LASSSGILLG-PNYHFQLTRPGISLYG--GTD 224
            +   E+F  L +  K +E +        AS+SG ++  P  +    R GI  YG   ++
Sbjct: 176 -TYTYEQFSKLTAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSE 234

Query: 225 KINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           ++ K +  ++  +T +  +  +++      VSYG   K  + S IA   IGYADGY   L
Sbjct: 235 EVKKENLKLKPALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLL 294

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--I 341
           SG             K  IKG    ++G++ MD  M D+T    +++GD + + G +  +
Sbjct: 295 SG-----------KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGL 343

Query: 342 KLD--DVALASGTTNYDLLVRIGTRYAKFY 369
           K D  D+A   GT NY++L  I  R  + Y
Sbjct: 344 KFDANDMAEIMGTINYEILCMISHRVPRIY 373


>gi|110798951|ref|YP_695311.1| alanine racemase [Clostridium perfringens ATCC 13124]
 gi|123148891|sp|Q0TSS9|ALR_CLOP1 RecName: Full=Alanine racemase
 gi|110673598|gb|ABG82585.1| alanine racemase [Clostridium perfringens ATCC 13124]
          Length = 386

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 169/390 (43%), Gaps = 57/390 (14%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  + E  
Sbjct: 11  EIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAIITEAD 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---YSKLMS-----CGVS 121
           +LR     A I +L     G   I F  NLI   + + Q  +   Y+K +S      G  
Sbjct: 71  ELRDAGITAPIMIL-----GYTPINFAENLIN--NEIEQTVYDVEYAKELSDFALKLGKK 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-------IISHLACADDPSSHV 174
               + +DTG  R+G    E         NK L   SL       + +H + +D+     
Sbjct: 124 AKVHIAIDTGMGRIGFLPNE------EGLNKVLEICSLPGVEVIGLFTHFSTSDEKDK-- 175

Query: 175 NSVQLERFRTLISHYKGIEAS-------LASSSGILLG-PNYHFQLTRPGISLYG--GTD 224
            +   E+F  L +  K +E +        AS+SG ++  P  +    R GI  YG   ++
Sbjct: 176 -TYTYEQFSKLTAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSE 234

Query: 225 KINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           ++ K +  ++  +T +  +  +++      VSYG   K  + S IA   IGYADGY   L
Sbjct: 235 EVKKENLKLKPALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLL 294

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--I 341
           SG             K  IKG    ++G++ MD  M D+T    +++GD + + G +  +
Sbjct: 295 SG-----------KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGL 343

Query: 342 KLD--DVALASGTTNYDLLVRIGTRYAKFY 369
           K D  D+A   GT NY++L  I  R  + Y
Sbjct: 344 KFDANDMAEIMGTINYEILCMISHRVPRIY 373


>gi|291563798|emb|CBL42614.1| alanine racemase [butyrate-producing bacterium SS3/4]
          Length = 391

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 177/382 (46%), Gaps = 29/382 (7%)

Query: 5   EFLRL--KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           EF R+  ++DL  ++ N  +M   L    +   VVK +AYG G   +A  + +  V  + 
Sbjct: 2   EFDRIYAEVDLGRIEENMEAMKEHLRPGTKMYGVVKTDAYGHGAVPVARTI-DRFVCGYA 60

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGV 120
           V +V+EG+KLR +  +  I  L  +  G+ +   + ++ +P               + G 
Sbjct: 61  VATVDEGLKLRRHGIEKEILSLGPVSAGRYQECLENDISLPFFEYRRAKELSDAAAAEGK 120

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQL 179
           +    + VDTG +R+GL   E    T     +    +++ + +H A AD+        Q 
Sbjct: 121 TAKIHIAVDTGMSRIGLFPDEGSVETVKEIAELPALRIAGMFTHFARADEADKTNAGEQY 180

Query: 180 ERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-P 231
            RF       K  G++  +   ++S+GI+  P+++    R GI++YG   +D++ +    
Sbjct: 181 SRFHAFCDAVKAAGVDVPVCHCSNSAGIVELPDFNMDAVRAGITIYGLYPSDEVKQDIIS 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +  ++ I  I++   G  VSYGG  K  +   IA  + GY DGYP  LSG      
Sbjct: 241 LKPAMALKSFITYIKEIGPGTEVSYGGTFKAEKTMRIATVSAGYGDGYPRNLSGK----- 295

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 G+  I G    ILG+I MD  M D+T     + GD + + G D    I ++++A
Sbjct: 296 ------GEVLIHGKRAKILGRICMDQFMVDLTGIPEAKEGDSVTLVGRDGNQEITMEELA 349

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             SG  +Y++   IG R  + Y
Sbjct: 350 EISGGFHYEIPCLIGKRVPRRY 371


>gi|218234797|ref|YP_002366787.1| alanine racemase [Bacillus cereus B4264]
 gi|296502685|ref|YP_003664385.1| alanine racemase [Bacillus thuringiensis BMB171]
 gi|218162754|gb|ACK62746.1| alanine racemase [Bacillus cereus B4264]
 gi|296323737|gb|ADH06665.1| alanine racemase [Bacillus thuringiensis BMB171]
          Length = 391

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 71  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 129

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 190 AVNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|18309850|ref|NP_561784.1| alanine racemase [Clostridium perfringens str. 13]
 gi|20531981|sp|Q8XM22|ALR_CLOPE RecName: Full=Alanine racemase
 gi|18144528|dbj|BAB80574.1| alanine racemase [Clostridium perfringens str. 13]
          Length = 386

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 169/390 (43%), Gaps = 57/390 (14%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  + E  
Sbjct: 11  EIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAIITEAD 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---YSKLMS-----CGVS 121
           +LR     A I +L     G   I F  NLI   + + Q  +   Y+K +S      G  
Sbjct: 71  ELRDAGITAPIMIL-----GYTPINFAENLIN--NEIEQTVYDVEYAKELSDFALKLGKK 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-------IISHLACADDPSSHV 174
               + +DTG  R+G    E         NK L   SL       + +H + +D+     
Sbjct: 124 AKIHIAIDTGMGRIGFLPNE------EGLNKVLEICSLPGVEVIGLFTHFSTSDEKDK-- 175

Query: 175 NSVQLERFRTLISHYKGIEAS-------LASSSGILLG-PNYHFQLTRPGISLYG--GTD 224
            +   E+F  L +  K +E +        AS+SG ++  P  +    R GI  YG   ++
Sbjct: 176 -TYTYEQFSKLTAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSE 234

Query: 225 KINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           ++ K +  ++  +T +  +  +++      VSYG   K  + S IA   IGYADGY   L
Sbjct: 235 EVKKENLKLKPALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLL 294

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--I 341
           SG             K  IKG    ++G++ MD  M D+T    +++GD + + G +  +
Sbjct: 295 SG-----------KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGL 343

Query: 342 KLD--DVALASGTTNYDLLVRIGTRYAKFY 369
           K D  D+A   GT NY++L  I  R  + Y
Sbjct: 344 KFDANDMAEIMGTINYEILCMISHRVPRIY 373


>gi|302670570|ref|YP_003830530.1| alanine racemase Alr [Butyrivibrio proteoclasticus B316]
 gi|302395043|gb|ADL33948.1| alanine racemase Alr [Butyrivibrio proteoclasticus B316]
          Length = 387

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 175/403 (43%), Gaps = 58/403 (14%)

Query: 4   NEFLRL--KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQD 59
            E+ R+  +ID+ A+K N  SM   +    R  AVVK +AYG G  +IA +L N   +  
Sbjct: 3   EEYSRVYARIDIDAIKYNLESMRKNIPDGTRIMAVVKTDAYGHGATRIALSLENVDYIWG 62

Query: 60  FFVTSVEEGVKLRL-----------YT-PQA-RIFVLYGIHPGQEKIIFDTNLIPVISSV 106
           + V + EE  +LR            YT P A R  +L G+ P     +F  ++   +S  
Sbjct: 63  YAVATAEEAFELRDAGAIKPILVLGYTFPYAYRRMLLEGVRPS----VFRMDMAQELSDC 118

Query: 107 PQ-LTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHL 164
            Q L    +L      H   + VDTG +R+G++  E   DF     N    Q+  I +H 
Sbjct: 119 GQELVDSGELTELPCVH---IAVDTGMSRIGVTPDEKGADFVSKVMNMPGIQVEGIFTHF 175

Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEAS---------LASSSGILLGPNYHFQLTRP 215
           A AD+      S   ER +      K +E +          A+S+ I+  P     + R 
Sbjct: 176 ARADEADL---SNAREREKVFADFVKSVEETTGKKIPLHHCANSASIISVPESSMDMVRA 232

Query: 216 GISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAA 272
           G+++YG     D       ++  +   + I++I++  AG  VSYGG     + + IA   
Sbjct: 233 GVTMYGMWPSEDVPRDIVSLKPTMELISHIVMIKEVPAGTPVSYGGTYVTDKPTKIATIP 292

Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +GY DGYP +LS             G   I G+   I+G++ MD  M D+TD   +  GD
Sbjct: 293 VGYGDGYPRSLSN-----------KGYVLINGHHANIIGRVCMDQFMVDVTDIHYVLEGD 341

Query: 333 YIQIFGPD------IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            + + G D      I  + +   SG  NY+L      R  + +
Sbjct: 342 EVVLLGRDKNTGEEISAELLGEMSGRFNYELTCDFNKRIPRVF 384


>gi|325134740|gb|EGC57378.1| alanine racemase [Neisseria meningitidis M13399]
 gi|325144906|gb|EGC67192.1| alanine racemase [Neisseria meningitidis M01-240013]
 gi|325205630|gb|ADZ01083.1| alanine racemase [Neisseria meningitidis M04-240196]
          Length = 352

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 175/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+      P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLIRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTKGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|304413460|ref|ZP_07394933.1| alanine racemase [Candidatus Regiella insecticola LSR1]
 gi|304284303|gb|EFL92696.1| alanine racemase [Candidatus Regiella insecticola LSR1]
          Length = 378

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 171/364 (46%), Gaps = 50/364 (13%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
            N++  +VVK NAYG G  ++   L       F +  + + V LR    Q  I +L G  
Sbjct: 28  ANSKIWSVVKANAYGHGLARVWRCLEK--TDGFALLDLNDAVLLREQGWQKPILLLEGFF 85

Query: 88  PGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQVDTGFNRLGLSLQEALD 144
             ++  + D  NL  V+ S  QL   + L +  +  P    L+ ++G NRLG   +EA +
Sbjct: 86  KTEDLALIDHYNLTTVVHSDWQL---AALENAKLKKPVEVYLKFNSGMNRLGFPCEEAHE 142

Query: 145 FTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA---SLASS 199
               +  K++  +    ++SH A A    +H  ++  E +R +  + + I A   SLA+S
Sbjct: 143 IWQRA--KQIANIKHLTLMSHFANA----AHNGNIDNE-YRFIQQNCQSIPADCSSLANS 195

Query: 200 SGILLGPN--------------YHF-QLTRPGISLYG----GTDKINKSHPMQTVVTAEA 240
           + IL  P+               HF    RPGI LYG    G  +  K   ++  ++  +
Sbjct: 196 AVILWHPSVYTSPINNLSNNNLSHFCHWVRPGIMLYGASPNGQVQAIKDLGLRPAMSLHS 255

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ ++   AG+ V YG   +      I + A GYADGYP         ++P+   G   
Sbjct: 256 ELLAVQTLKAGDTVGYGSHYRANEAQRIGIVACGYADGYP--------RNAPT---GTPI 304

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            ++G +   LG ++MDM   D+      +VG  ++++G  + +DDVA+A+GT +Y+L+  
Sbjct: 305 LVEGVLTKTLGAVSMDMLAVDLKPCPHAQVGSIVELWGNHLPIDDVAMAAGTISYELMCA 364

Query: 361 IGTR 364
           +  R
Sbjct: 365 LSAR 368


>gi|303246677|ref|ZP_07332955.1| alanine racemase [Desulfovibrio fructosovorans JJ]
 gi|302492017|gb|EFL51895.1| alanine racemase [Desulfovibrio fructosovorans JJ]
          Length = 373

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 167/377 (44%), Gaps = 31/377 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++ +LR ++ L  +  N+  + +  G+    AV+K +AYG G  + A AL  AG   F +
Sbjct: 4   AHNYLRTRVRLDNIVANYKHLCSFGGH--VLAVIKADAYGHGLVETARALAGAGCDAFAI 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120
            SV EG  LR       I  L G + P  + ++ D ++ P I    QL   + L +  G 
Sbjct: 62  GSVAEGAALRQSGCAGAIVSLVGPVLPEDDAMVLDFDVTPFIHDFDQLARLAALAAGQGK 121

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQL 179
               AL+ DTG  RLG    +              ++ +  SHLA ADDP++      Q 
Sbjct: 122 KARVALKFDTGMARLGFCECDVPHLLETLRGMPAIEVVMASSHLATADDPNAFDFVGEQG 181

Query: 180 ERFRTLISHYKG----IEASLASSSGILL-GPNYHFQLTRPGISLYG-----GTDKINKS 229
            +F  +    +     +EASL +S+GIL    ++ F+  R GI+LYG     GT +    
Sbjct: 182 SKFARVCQGLRDGGLTLEASLCNSAGILAHATDFGFEARRAGIALYGVNPFAGTAREPLG 241

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +   +    RI+ +    +G  +SYG      RD  +A+ A GYAD Y   LS     
Sbjct: 242 AGLVPAMETVTRIVSVHDLASGCSISYGRTYTAERDMRVAIVAAGYADAYSRGLSNR--- 298

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   + G  V I+G++ M +T  DIT  +    GD I + G +    I  +D
Sbjct: 299 --------GYMCLAGKRVAIVGRVCMQLTAVDIT-GVDAAPGDVIHLLGGEGLGAITAED 349

Query: 346 VALASGTTNYDLLVRIG 362
           +A    T  Y++    G
Sbjct: 350 LATWWETIPYEVFCLFG 366


>gi|227876092|ref|ZP_03994211.1| alanine racemase [Mobiluncus mulieris ATCC 35243]
 gi|227843391|gb|EEJ53581.1| alanine racemase [Mobiluncus mulieris ATCC 35243]
          Length = 457

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 175/398 (43%), Gaps = 65/398 (16%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  +DL A + N   M   +  ++  A+VK +AYG G E+++ A   AG Q   V  V 
Sbjct: 12  VRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVAKVA 71

Query: 67  EGVKLRLY-------------TP-----QARIFV--LYGIHPGQEKIIFDTNLIPV---- 102
           E  +LR +             TP     ++R+F     G+   Q   IF     P     
Sbjct: 72  EAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTVQRPRIFAWLYTPSTDLK 131

Query: 103 ----------ISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
                     +S++ QL   S    + G+     L+VDTG  R G +L E  +    +  
Sbjct: 132 STIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKLARA 191

Query: 152 KK---LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY-----KGIEASL---ASSS 200
           ++   L ++S I SH A +D+PS+   +    +  T    Y      G++  L   A++ 
Sbjct: 192 RERSGLAEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVNGLQPKLRHMAATG 251

Query: 201 GILLGPNYHFQLTRPGISLYG--GTDKINKSHPM--QTVVTAEARIILIRKALAGELVSY 256
            IL  P  HF L R GIS YG     +I  +  +  + V+  E  +  ++K  AG  VSY
Sbjct: 252 AILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSAVSY 311

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           GG+      + +A+  IGYADG+   L G             K ++ G++ P++G+I MD
Sbjct: 312 GGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRIPMD 360

Query: 317 MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             + ++  ++    GD I    P +K  D+A+  G  N
Sbjct: 361 QIILNLGSAID-GAGDLIP---PPLKPGDLAVIFGDPN 394


>gi|109947823|ref|YP_665051.1| hypothetical protein Hac_1313 [Helicobacter acinonychis str.
           Sheeba]
 gi|122973245|sp|Q17WC4|ALR_HELAH RecName: Full=Alanine racemase
 gi|109715044|emb|CAK00052.1| unnamed protein product [Helicobacter acinonychis str. Sheeba]
          Length = 377

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 179/388 (46%), Gaps = 44/388 (11%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D ++L++N+H+  NA+  +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVDTSSLRHNFHAAKNAIPKDAHIMAVVKANAYGVGALKASEVFLQEGAHYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYA 125
            ++LR   P+  I +L G  P    +++ D NL  +I S+ Q   +S+       H    
Sbjct: 68  ALELRSCFPKTPILIL-GYSPNSNAQMLIDNNLTAMIFSLEQAGVFSQAALKSQKHLKVH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-----LIISHLACAD-DPSSHVNSVQL 179
           L++DTG +RLGL      +F      KK+  L+      I +HL+ A+ +  +H  + Q+
Sbjct: 127 LKIDTGMHRLGLE----PNFKSIEMIKKIRALNGLEVEGIFTHLSNANANIKTHAKN-QM 181

Query: 180 ERFRTLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYGGTDKINKSH 230
           + F   +     + IE       +S+GIL       N    L RPGI LYG         
Sbjct: 182 KIFNAFLEQLLDQKIEFQYRHAYNSAGILSLCNNNENRFLNLYRPGIMLYGFYPSNEMKQ 241

Query: 231 PMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
             QT    VV+ +A+I+ I++   GE V YG       ++LI   A+GYADG    L   
Sbjct: 242 SCQTILNNVVSLKAKIVQIKRVKKGEFVGYGKHFYTNEETLIGTLALGYADGLVRDLGNR 301

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD 345
                       +  I   + P++GK+ MD     + D +  + GD + +FG    K +D
Sbjct: 302 I-----------QVAINNQLAPLIGKVCMDQCFVKL-DGIEAKEGDEVILFGDKSTKAND 349

Query: 346 ---VALASGTTNYDLLVRIGTRYAKFYT 370
              +A+   T  Y+ +  +  R  + Y 
Sbjct: 350 ANEIAMLLNTIPYETISTLSKRLERVYV 377


>gi|311071135|ref|YP_003976058.1| alanine racemase [Bacillus atrophaeus 1942]
 gi|310871652|gb|ADP35127.1| alanine racemase [Bacillus atrophaeus 1942]
          Length = 389

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 165/372 (44%), Gaps = 27/372 (7%)

Query: 10  KIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L+A++ N  +M    G+     AVVK NAYG G  ++A A  +AG     V  ++E 
Sbjct: 13  EINLSAIEENVSNMKKHIGDRVELMAVVKANAYGHGDAEVAEAALSAGASCLAVAILDEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR     A I VL  + P   +I  + ++     SV  +   ++ +     H + L+V
Sbjct: 73  ISLRKRGLAAPILVLGAVPPEYVEIAAEYDVTLTGYSVEWIQEAARHIKETPVH-FHLKV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG NRLG+  +E +        +  G L   + +H A AD+       +Q ERF+ LI+
Sbjct: 132 DTGMNRLGVKTEEEVQNVMKILERNPGLLCKGVFTHFATADEKDRSYFLMQFERFKELIA 191

Query: 188 --HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP--MQTVVTAEAR 241
              +K +    A+S+  L      F   R G+ +YG   + +I    P  +    T  + 
Sbjct: 192 PLPWKQLMVHCANSAAGLRLKKGFFNAVRFGVGMYGLRPSAEITNEIPFRLHQAFTLNST 251

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  ++K   GE VSYG      +D  I    +GYADG+   L G +              
Sbjct: 252 LTHVKKIHKGESVSYGATYTAEKDQWIGTVPVGYADGWLRKLQGTEV------------L 299

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           I G  + I G+I MD  M ++        G  + + G      I +D++A    T NY++
Sbjct: 300 INGKRLKIAGRICMDQFMVELDKEYP--PGSRVTLIGRQKDDCITVDEIASRLETINYEV 357

Query: 358 LVRIGTRYAKFY 369
              I +R  + +
Sbjct: 358 TCTISSRVPRMF 369


>gi|229043862|ref|ZP_04191559.1| Alanine racemase [Bacillus cereus AH676]
 gi|228725487|gb|EEL76747.1| Alanine racemase [Bacillus cereus AH676]
          Length = 408

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLDAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 146

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|255527458|ref|ZP_05394329.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|296186051|ref|ZP_06854456.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|255508838|gb|EET85207.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|296049319|gb|EFG88748.1| alanine racemase [Clostridium carboxidivorans P7]
          Length = 394

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 178/393 (45%), Gaps = 55/393 (13%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I++  + +N   +  ++ +    +VVK +AYG G  ++AP L   G     V  + E +
Sbjct: 11  EINIDNVIHNIKEIRRVAKSKEIISVVKADAYGHGAVELAPILLENGADRLAVALLSEAL 70

Query: 70  KLRLYTPQARIFVL------YG---IHPGQEKIIFDTNLIPVISS--VPQLTFYSKLMSC 118
           +LR    +A I +       YG   IH   E +I +   + V+S     +L+  +K ++ 
Sbjct: 71  QLRKSGIKAPILIFGYTPLKYGKDIIHNNAEDVINNELEVTVLSYDYAKKLSKVAKKLNK 130

Query: 119 GVSHPYALQVDTGFNRLGL--SLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPS 171
            V     + VDTG  R+G   + Q   D        K+ QL  II     SH + +D+ S
Sbjct: 131 NVK--IHINVDTGMGRIGFLPTTQSVEDIY------KISQLPNIIIEGLYSHFSTSDEKS 182

Query: 172 SHVNSVQLERFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGT 223
               + Q +R+   +  Y+ +E          +A+S+ ++  P  H    RPGI+ YG  
Sbjct: 183 KSYANKQFKRY---LDFYERLEKKDIRINIKHIANSAALIDLPYTHLDAVRPGIANYGYY 239

Query: 224 DKINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
              + +H    ++  +T +  ++  R   AG  + YG   +  R S I    IGYADGY 
Sbjct: 240 PSEDVNHDIIKLKPTMTLKCNVVASRTLKAGSYIGYGRTFRTERASRIVTLGIGYADGYD 299

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
             LS +           G+  +KG   PI+G+I MDM M D+TD   I+V D + + G  
Sbjct: 300 RRLSNV-----------GEIVVKGKAAPIVGRICMDMCMSDVTDIGDIKVSDEVILMGES 348

Query: 341 IK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +     ++++A  +GT   ++   I  R  + Y
Sbjct: 349 LSEKTTVENIAKLTGTIPQEVTSNISKRVPRHY 381


>gi|160915859|ref|ZP_02078067.1| hypothetical protein EUBDOL_01881 [Eubacterium dolichum DSM 3991]
 gi|158432335|gb|EDP10624.1| hypothetical protein EUBDOL_01881 [Eubacterium dolichum DSM 3991]
          Length = 382

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 176/391 (45%), Gaps = 37/391 (9%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           SN    L+I ++ +++N   +  L  G  +   +VK NAYG G    A  L   G+  F 
Sbjct: 4   SNTRSWLEIHVSRIEHNVAEIQKLLLGTNKIMGIVKANAYGHGDVVCAKELERIGIDFFG 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V+SV+E + LR     + I +L    P    ++    L   I S   L +  KL +  ++
Sbjct: 64  VSSVDEALSLREGGISSPILILGYTPPVHFPLLKKYRLTQTILS---LEYAKKLNAYALA 120

Query: 122 HPYALQV----DTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           H   + V    DTG +R+G+  Q     ++     +  K      I SH   +DD     
Sbjct: 121 HDECIDVHVKLDTGMSRIGIVTQSHAYHIEEVKAVYALKGLHACGIFSHFPVSDDLGEDA 180

Query: 175 NSV---QLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGT--D 224
            +    Q+E F  +++  K  GIE  L    +S GIL  P+  +   RPG+   G T  D
Sbjct: 181 QAFTKHQIELFEQVLADLKQAGIEVGLRHIQNSYGILNYPDLDYDYARPGLLWMGITSDD 240

Query: 225 KIN-KSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
           +I  K++P    V+  +A + L++    G  VSYG   K +    IA  ++GYADGYP +
Sbjct: 241 EIAIKTNPDFLPVMEWKANVSLVKTIEKGVTVSYGRHYKASETRRIATLSVGYADGYPRS 300

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
           LS   +             I G    I+G I MD  M D++D   ++ GD   +FG D  
Sbjct: 301 LSNTHA----------YVLIHGKRAEIIGNICMDQMMVDVSDIEDVKEGDVATLFGCDGE 350

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             + +D ++  + T N + L RI  R  + Y
Sbjct: 351 ECLSIDTLSRNAHTINNETLCRISARVPRIY 381


>gi|257438081|ref|ZP_05613836.1| alanine racemase [Faecalibacterium prausnitzii A2-165]
 gi|257199412|gb|EEU97696.1| alanine racemase [Faecalibacterium prausnitzii A2-165]
          Length = 401

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 171/386 (44%), Gaps = 39/386 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL+ N+ ++   +G+    AVVK ++YG G  + A      G     V+ + E +
Sbjct: 13  EIDLDALRANFRTVKQRAGSLPLCAVVKADSYGHGAVQCARVFAQEGASWLAVSCLAEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQV 128
           +LR       I +L  + P     +   ++     S+PQ    S+   + G      L V
Sbjct: 73  QLRRSGQTLPILILGHVQPAYAAALIRNDITAACYSLPQAQALSEAAQAAGGRVKVHLAV 132

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG----QLSLIISHLACADDPSSHVNSVQLERFRT 184
           DTG  R+G +L+   D               +++ +  H + ADD +    +   E+ R 
Sbjct: 133 DTGMGRIGFALRTDFDAAIAEAIAACTLPGLEMTGLFQHFSVADDTAEENIAYTAEQHRL 192

Query: 185 LISHYKGIEAS--------LASSSGILLGPNY------HFQLTRPGISLYG--GTDKINK 228
            +     + A+          +S+G++L P++         + RPGI LYG   +D++ +
Sbjct: 193 FVQACSALTAAGHEPGIVHCDNSAGVMLHPDWPEGLPRAHCMARPGIILYGFDPSDEV-R 251

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               + V+  +  + +++    G+  SYG +    R + +A    GYADGYP  LS    
Sbjct: 252 FGLFRPVMKLKTVVSMVKVLQPGQSTSYGRRFTAERPTPVATLCTGYADGYPRQLS---- 307

Query: 289 EHSPSVFLGGKGFIK--GYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDI--KL 343
                    GKG ++  G   P+LG++ MD  M D++    +++ GD   ++G  +    
Sbjct: 308 --------CGKGIVEIHGTPCPVLGRVCMDQMMVDLSAVPGTVQEGDEAILWGGTVSDSA 359

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +D+A  + T  Y++L  +  R  + Y
Sbjct: 360 EDIAHKTDTITYEVLCGVSRRVPRVY 385


>gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
 gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
          Length = 823

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 167/396 (42%), Gaps = 57/396 (14%)

Query: 4   NEFLRLKIDLTALKNNWHSM--------NALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           ++FL LK+  T L+ N +++        N L    +   +VK +AYG G  ++A  L   
Sbjct: 452 SDFLELKVHETILEINLNALVDNLNYYRNKLKPETKLMCMVKASAYGAGPFEVAKTLEEH 511

Query: 56  GVQDFFVTSVEEGVKLR---------LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106
            V    V   +EG  LR         +  P+A  F          K +F   L P I   
Sbjct: 512 RVDYLAVAVADEGADLRKAGITCPIVIMNPEATAF----------KTMFAYRLEPNIYGF 561

Query: 107 PQLTFYSKLMSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISH 163
           P L    K     GVS+ P  +++DTG +RLG S  + +       +++   +   + SH
Sbjct: 562 PILEEMIKAAEREGVSNFPIHIKIDTGMHRLGFSPHQDMQRLVERLHRQSAVIPRSVFSH 621

Query: 164 LACADDPS-SHVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGI 217
           LA +D          Q+E F    +  +      I   + +++GI   P   F + R GI
Sbjct: 622 LAGSDSERFDAFTRKQIETFEAAAAELQAGFGVKILRHVCNTAGIERYPGAQFDMVRLGI 681

Query: 218 SLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
            LYG     N  H +  V T +  I+ I    A E V Y  +  L RDS IA   IGYAD
Sbjct: 682 GLYGIDPFTN--HILHNVSTLKTTILQIHDIPADETVGYSRKGVLYRDSRIATIPIGYAD 739

Query: 278 GYPLTLSGLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
           G    L              G G     + G   P +G I MD+ M D+TD +  + GD 
Sbjct: 740 GLNRHL--------------GNGHAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCKEGDK 784

Query: 334 IQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             IFG D+ +  +A A GT  Y++L  +  R  + Y
Sbjct: 785 AIIFGDDLPVTVLAEALGTIPYEILTSVSNRVKRVY 820


>gi|282917419|ref|ZP_06325172.1| alanine racemase [Staphylococcus aureus subsp. aureus D139]
 gi|282318621|gb|EFB48978.1| alanine racemase [Staphylococcus aureus subsp. aureus D139]
          Length = 382

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 186/395 (47%), Gaps = 56/395 (14%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL G+ P ++    D  +   ++ +VP   +  + +  
Sbjct: 62  FAVATLDEAIELRMHGITAKILVL-GVLPVKD---IDKAIQHRVALTVPSKQWLKEAIK- 116

Query: 119 GVSHPYA------LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLAC 166
            +S          +++DTG  RLG+    + QE ++       ++  QL    + +H AC
Sbjct: 117 NISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEII-----QQYEQLVFEGVFTHFAC 171

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG---- 221
           AD+P   + + Q + F+ +++     E     +S+G LL         RPGISLYG    
Sbjct: 172 ADEPGD-MTTEQYQCFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 230

Query: 222 --GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
                KI K H ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY
Sbjct: 231 EYVQQKI-KVH-LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGY 288

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-- 337
              + G         F+     + G+   ++G++ MD T+  + D   ++ GD + +   
Sbjct: 289 LRIMQG--------SFVN----VNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDN 334

Query: 338 ---GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
               P   ++  A    T NY++L  +  R  + Y
Sbjct: 335 HRESPQ-SVEVAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|75763091|ref|ZP_00742872.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228900692|ref|ZP_04064911.1| Alanine racemase [Bacillus thuringiensis IBL 4222]
 gi|74489425|gb|EAO52860.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228858950|gb|EEN03391.1| Alanine racemase [Bacillus thuringiensis IBL 4222]
          Length = 408

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 171/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N +       + +    A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVNEFKKHVNDEKIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 146

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVV 236
            ++  +  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTARELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTIVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGYALINGIRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|256371254|ref|YP_003109078.1| alanine racemase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007838|gb|ACU53405.1| alanine racemase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 363

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 168/362 (46%), Gaps = 19/362 (5%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  L+ N   +   +  A  +AVVK +AYG G   +A AL +  V  F V +VEEG+
Sbjct: 10  RIDLERLRANARLLAERAAPAALSAVVKADAYGHGASTVARALGDL-VDAFCVATVEEGL 68

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQV 128
            LR      R+ VL             ++L P +     +   +   S         + V
Sbjct: 69  ALRAAGVTGRVLVLSEPPESAVSACAASSLEPFVEHERFVEALAGAASALGREASVHIDV 128

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSV-QLERFRTLI 186
           DTG +R G+    A   T  +  ++ G ++  + SHL  AD+  +H  ++ QL RFR + 
Sbjct: 129 DTGMHRSGV--HPAQAATLAASARRHGVRVVGVASHLVRADEAPTHPTTLEQLSRFREVA 186

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     E  L ++ G+L  P   F+  R GI LYG   + +    ++ V+   + ++ + 
Sbjct: 187 ARIGAPERHLLATGGLLALPEGRFERVRVGIGLYGYGPRRDDVAGLRPVLRLVSHVVRLE 246

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF-IKGY 305
              AGE VSYG ++ L   + +A   IGYADG P            + F  G  F  KG 
Sbjct: 247 ALGAGEAVSYGHRRPLDVPAEVATLPIGYADGVPR-----------AAFDAGLAFWAKGV 295

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            +PI G +TMD TM      L + +GD + + G ++   + A   GT  Y++L R+G R 
Sbjct: 296 RLPIAGTVTMDQTMVAAPRGL-LALGDEVSLIGDEVDAWEWADVLGTIPYEVLARLGPRI 354

Query: 366 AK 367
            +
Sbjct: 355 PR 356


>gi|281422046|ref|ZP_06253045.1| alanine racemase [Prevotella copri DSM 18205]
 gi|281403835|gb|EFB34515.1| alanine racemase [Prevotella copri DSM 18205]
          Length = 389

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 171/389 (43%), Gaps = 48/389 (12%)

Query: 9   LKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL  +K N+    N+L  +    AV+K +AYG G   IA  L   G + F V++++E
Sbjct: 14  IEIDLDQIKQNYFIYKNSLQSDVEIMAVIKADAYGHGDAHIARWLSEQGCRLFAVSNIDE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            V LR    +  I +L    P   K +   +L   I S     +   L   G        
Sbjct: 74  AVGLRNAGIKGEILILGYTSPKYAKTLSYLDLSQAIVSEE---YAEALSQAGQRVKCQFA 130

Query: 128 VDTGFNRLGL------SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---Q 178
           +DTG NR+GL      S +E +    +S       +  + +HL  AD  +         Q
Sbjct: 131 IDTGMNRIGLDGDNTSSCEEIIRKYSDSL-----IVEGLFTHLCVADTDTEEAKKFTYGQ 185

Query: 179 LERFRTL---ISHYKGIEASLASSSGIL--LGPNYHFQ----LTRPGISLYGGTDKINKS 229
           + +F+ +   +S  K       +S+G L  L  N  F+    + R GI LYG    +   
Sbjct: 186 IRKFKAVADAVSDLKLPFVHCCNSAGGLYYLNNNSEFEGVGKIVRLGIVLYGLKPDVENQ 245

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++  +T ++ + +++    GE + YG    + ++  +A    GYADG    LS   
Sbjct: 246 LPDGVKPAMTWKSVVSMVKNVHPGETIGYGRTFTVEKEMKVATVTTGYADGLNRLLSN-- 303

Query: 288 SEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL-- 343
                      KGF  I GY  PI+G+I MD T+ D+T+   +++G  + I G    L  
Sbjct: 304 -----------KGFVMINGYKAPIVGRICMDQTLVDVTEIPDVKMGTEVVIIGKSGDLIY 352

Query: 344 --DDVALASGTTNYDLLVRIGTRYAKFYT 370
             DD+A   GT  Y+++  I  R  +FY 
Sbjct: 353 TSDDMAQDLGTIGYEVICNITKRVQRFYC 381


>gi|88856968|ref|ZP_01131618.1| alanine racemase [marine actinobacterium PHSC20C1]
 gi|88813785|gb|EAR23657.1| alanine racemase [marine actinobacterium PHSC20C1]
          Length = 366

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 178/383 (46%), Gaps = 42/383 (10%)

Query: 7   LRLK-IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           LRL  I   A+ +N  ++ AL   A   AVVK N YG G  + A A  + G     V  +
Sbjct: 4   LRLATISTGAISHNIQTLRALVAPALVMAVVKANGYGHGAVESARAALDGGADWLGVADI 63

Query: 66  EEGVKLRLYTPQARIFVLYGIH-PG---QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
            E + LR     A +  L  +H PG    E +    +L   ISS+ QLT  +        
Sbjct: 64  TEALALRAAGIDAPL--LAWLHQPGAGFSEAVHARVDL--GISSIAQLTEVAAASGTACV 119

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSL--IISHLACADDPSSHVNSVQ 178
           H   L+VDTG +R G  L E   F   +   +L G++ +  I SHLA A    +  ++ Q
Sbjct: 120 H---LKVDTGLHRNGAFLDEWQQFFEAAVAHELAGRIHVRGIWSHLANA---GAEHDAKQ 173

Query: 179 LERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN-KSH 230
           ++ F T ++  H  G+   L   A+S G +  P+  F L R GIS YG    D ++  + 
Sbjct: 174 IDLFSTAVAMAHSVGLRPELRHLAASEGAIKHPDARFDLVRLGISAYGLAPADDVDVAAL 233

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +   +T  A +I +++ +AG  VSYG       D+ + +  +GYADG P       +  
Sbjct: 234 GLVPAMTLSAPVISVKRVVAGSGVSYGYDFYCENDTTLVLVPLGYADGVPRHA----TNR 289

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDV 346
            P    G +G        I G++ MD  + ++ D+  + VGD   +FG         DD 
Sbjct: 290 GPVSINGARG-------QIAGRVAMDQIVVNMGDT-PVAVGDRAVLFGDSSTGVPSADDW 341

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A+G+ NY+++ RIG R  + Y
Sbjct: 342 AEAAGSINYEIVTRIGQRVVRRY 364


>gi|330840033|ref|YP_004414613.1| Alanine racemase [Selenomonas sputigena ATCC 35185]
 gi|329747797|gb|AEC01154.1| Alanine racemase [Selenomonas sputigena ATCC 35185]
          Length = 372

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 166/389 (42%), Gaps = 41/389 (10%)

Query: 3   SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           S   +  +I+L A+++N+  +  AL G A+  AVVK NAYG G   +A     AG     
Sbjct: 2   SKRAVWAEINLGAIRHNYRVIGEALCGGAKLCAVVKANAYGHGALAVAKEAVAAGAAYLA 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           V ++ E  +LR       + VL  I P    E +  D     V  +V  L     + +  
Sbjct: 62  VATLSEAAELRRAGIGTPLLVLGLIDPLEAAEAVSLD-----VTQTVANLALAKAISAEA 116

Query: 120 VSHPYA----LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           ++        L +DTG  R+G + +EA     +       +L    SH A AD       
Sbjct: 117 LAQEKTAKLHLAIDTGMGRIGCTSEEASALARDIAVLPNIELEGAFSHFAMADVRDKAHA 176

Query: 176 SVQLERFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGG----- 222
             QL  F   +   + IE +        +A S+ IL  P  H  + R GI  YG      
Sbjct: 177 RGQLALF---LRATEAIEEAGVHLKLRHIAESAAILQMPEAHLDMVRAGIIQYGMYPSEE 233

Query: 223 -TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
               + ++ P++  +  +AR++ ++    G  + YG      R S IA   +GYADGY  
Sbjct: 234 VARDVRETSPLRPAMALKARVLFVKDVPEGFAIGYGCTWHAKRRSRIATLPLGYADGYIR 293

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PD 340
            LSG    H           I G   P++G+I MD  M D+TD   +  G  + +FG   
Sbjct: 294 ALSG--KAHVE---------ILGKTAPVVGRICMDQCMIDVTDIERVAEGTEVTLFGSAT 342

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  D+VA   GT NY++   I +R  + Y
Sbjct: 343 LSADNVAAWLGTINYEIPCLIASRVRRVY 371


>gi|325128679|gb|EGC51545.1| alanine racemase [Neisseria meningitidis N1568]
          Length = 352

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 175/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L P + +  QL     L+      P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQL---EALLVRHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGGDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|307244412|ref|ZP_07526523.1| alanine racemase [Peptostreptococcus stomatis DSM 17678]
 gi|306492231|gb|EFM64273.1| alanine racemase [Peptostreptococcus stomatis DSM 17678]
          Length = 387

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 177/385 (45%), Gaps = 46/385 (11%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L  L+ N+  + N +    +   V+K NAYG G  +IA      G   F V  + E
Sbjct: 12  LEINLDNLEYNFKGIKNKIPEGTKMCMVIKSNAYGHGAVQIARFYEELGADFFAVARLNE 71

Query: 68  GVKLRLYTPQARIFVLYGIHP---------GQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            ++LR +     I  L   +P              +FD  L   I  V +          
Sbjct: 72  AMELRDHGITTPILNLGYTNPLTIEDSIRNNVSMTVFDLELAQEIDKVAR--------EI 123

Query: 119 GVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSS 172
           G+     L++DTG +RLG + L + LD   +   K + Q   II     +H A AD  + 
Sbjct: 124 GIKAKIHLKLDTGMSRLGYVVLDDKLDEIADEI-KHISQFEGIILEGMYTHFATADARNK 182

Query: 173 HVNSVQLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKI 226
              ++Q  RF  ++   K     IE    S+S  +L  +  + + RPGI  YG   ++++
Sbjct: 183 EFENLQTHRFSEMVDKVKAMGVNIEYIHCSNSAEILDCDEKYDMVRPGIIQYGIYPSNEV 242

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT-RDSLIAVAAIGYADGYPLTLSG 285
           + S  ++ V+T +A++  ++   AG  +SYG     T ++ +I++AA GYADG+      
Sbjct: 243 SYSIDIKPVMTFKAKVSNVKVLDAGTSISYGRVYFTTVKEKIISIAA-GYADGF------ 295

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLD 344
           L    +P V+      I G    I+G+I MD  M  +   + ++V D + IFG D + +D
Sbjct: 296 LRGRRNPYVY------INGVKCSIVGRICMDQCMVRVPMDMDVKVNDDVVIFGDDLVSVD 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           DVA    T  ++++  +  R  + Y
Sbjct: 350 DVARGCDTIAHEVMCMMSRRVPRVY 374


>gi|188501452|gb|ACD54585.1| alanine racemase-like protein [Adineta vaga]
          Length = 404

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 172/383 (44%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVE 66
           ++IDL A++ N     + ++   +   +VK +AYG+G +KI        + D+  V    
Sbjct: 26  MRIDLNAMRCNLEQFCSVVASTTKMMMIVKASAYGVGIKKIGKWAEKTRLIDYLAVVYTA 85

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP---QLTFYSKLMSCGVSHP 123
           EGV+LR       I ++  I     KI  + NL  VI S+    QL  + +  +   S P
Sbjct: 86  EGVELRKANIHLPIMII-NIDKEDFKICQEYNLELVIYSISLLQQLMIWLEKNTQICSFP 144

Query: 124 -YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
              ++++TG NRLGL + E   F +  F     +L +  I +H+A +DDP    +    +
Sbjct: 145 SIHVKINTGMNRLGLDIDEIPVFLNILFKYTRCRLMVKSIYTHVAASDDPQE--DQYTAD 202

Query: 181 RFRTLISHYKGIEASL--------ASSSGILLGPNYHFQLTRPGISLYGGTDK-INKSHP 231
           + R  +S    +E  L         +S GIL  PN HF + R G  LYG  +  +     
Sbjct: 203 QTRAYLSSVHILETGLGYTVLKHMCNSMGILRHPNLHFDMVRVGGGLYGAAECFLPYMST 262

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +   ++  + +  +R       + Y  + ++ RDS I +  +GYADG    L    + H 
Sbjct: 263 LLPAISMISTVTQVRHVKKDSTIGYNRRGRVNRDSFIGILRLGYADGLRRQLG---NGH- 318

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-----SLSIEVGDYIQIFGPDIKLDDV 346
                 G  +I    V  +G I MD  M D+TD        +E  + ++IFG    ++++
Sbjct: 319 ------GHVWIHDCRVSFIGSICMDFAMIDLTDVPIDNKYELE-NESVEIFGSHNNIEEI 371

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  S T  +D +  IG R  + Y
Sbjct: 372 ARCSDTIVFDFISTIGKRVKRVY 394


>gi|218897074|ref|YP_002445485.1| alanine racemase [Bacillus cereus G9842]
 gi|218544621|gb|ACK97015.1| alanine racemase [Bacillus cereus G9842]
          Length = 391

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 171/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N +       + +    A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEIDLNAVKHNVNEFKKHVNDEKIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 71  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 129

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVV 236
            ++  +  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 190 AVNTARELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTIVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 299 KGYALINGIRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|153938703|ref|YP_001390994.1| alanine racemase [Clostridium botulinum F str. Langeland]
 gi|152934599|gb|ABS40097.1| alanine racemase [Clostridium botulinum F str. Langeland]
 gi|295319053|gb|ADF99430.1| alanine racemase [Clostridium botulinum F str. 230613]
          Length = 389

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 171/387 (44%), Gaps = 49/387 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +++L  L  N  ++          AVVK N YG G   IA  L   G     V  + E  
Sbjct: 11  EVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLSVACLSEAT 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPYAL 126
           +LR       I +L    P   + I D N+ PV+ S     QL+  + L +  V    A 
Sbjct: 71  ELREGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDYANQLSKAASLKNRIVKTHIA- 129

Query: 127 QVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
            VDTG  RLG      SL+E          K++  LS I      SH + +D+     + 
Sbjct: 130 -VDTGMGRLGFDPTVESLEEI---------KRIQDLSNIKIEGLCSHFSSSDENDKSYSE 179

Query: 177 VQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            Q + F+       GI        +++S+ I+  P+ +    R GI LYG   + ++NK 
Sbjct: 180 YQFKIFQNFRKKLIGINMKIPIYHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVNKE 239

Query: 230 H-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++ V+T +A I+ I+   +G+ V Y  + K  R S IA+  +GY DGY   LS    
Sbjct: 240 NLHIKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR-- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    GK  I G   PI+G I MD  M D+TD   ++VGD + I G D    ++ D
Sbjct: 298 ---------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYD 348

Query: 345 --DVALASGTTNYDLLVRIGTRYAKFY 369
             D+A   G T+ +++  I  R  + Y
Sbjct: 349 AEDIASKVGMTSGEIMSIISKRVPRVY 375


>gi|261392126|emb|CAX49626.1| alanine racemase [Neisseria meningitidis 8013]
          Length = 352

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 175/375 (46%), Gaps = 43/375 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYQILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLT-----FYSKLMSCGV 120
           EG++LR       I +L G+    E + +   +L P + +  QL       + K +    
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLIRHWKKTVKV-- 119

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSH 173
                L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S 
Sbjct: 120 ----WLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESG 168

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           +  +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++
Sbjct: 169 MTEIQMEAFDLGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGGDDRLK 227

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+    RI   R       + YG     ++ + + + A GYADGYP         +SP 
Sbjct: 228 PVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPV 283

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
                   + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT 
Sbjct: 284 A-------VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTI 335

Query: 354 NYDLLVRIGTRYAKF 368
            Y+L+  I  + AKF
Sbjct: 336 PYELMCNI--KRAKF 348


>gi|188996146|ref|YP_001930397.1| alanine racemase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931213|gb|ACD65843.1| alanine racemase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 324

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 173/345 (50%), Gaps = 37/345 (10%)

Query: 35  VVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           +VK +AYG     ++  L     ++ F V +  EG +LR       I +L G+   + +I
Sbjct: 1   MVKADAYGHNAVLVSKYLQELDFIESFCVATPLEGKELRENGIFKNILILGGVLKEEIEI 60

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
           +   NLIPVIS   QL    KL +        L+ DTG  RLG  L+       +     
Sbjct: 61  LNQYNLIPVISDFNQLEIARKLKN----RKIHLKFDTGMRRLGFYLENV-----DKIKPL 111

Query: 154 LGQLSL--IISHLACAD-DPSSHVNSVQLERFRTLIS--HYKGIEASLASSSGILLGPNY 208
           L +  +  +++HL+ AD D    +N  Q++ F+ +++    K     + +S+G++   ++
Sbjct: 112 LKEFEIEGVLTHLSSADTDREYTIN--QIKEFKEILNLLDVKPKYIHVQNSAGVVYECDF 169

Query: 209 HFQLTRPGISLYGGTDKINKSHPMQ--TVVTAEARIILIRKALAGELVSYGGQKKLTRDS 266
              + R G+++YG  +K  +S+P++   V++ +++II I+   +G+ VSY G     +  
Sbjct: 170 -CNVIRVGLAMYG--EKPFESYPIELKQVMSVKSKIISIKDVKSGDRVSYNGSFVAKKPM 226

Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
            +A+   GYADG P +LS      +   FL     + G   PILGKITMDMT+ D+++  
Sbjct: 227 KVAIVPFGYADGLPRSLS------NRWFFL-----VNGKEAPILGKITMDMTIVDVSEIE 275

Query: 327 SIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAK 367
           +I +G+ + I G      I   D+A   GT +Y+++  I  R  +
Sbjct: 276 NINIGNEVVIVGESGNKRITFGDIANIVGTISYEIMCGISKRVVR 320


>gi|19076018|ref|NP_588518.1| alanine racemase Alr1 [Schizosaccharomyces pombe 972h-]
 gi|12229634|sp|O59828|ALR1_SCHPO RecName: Full=Alanine racemase, catabolic
 gi|3136037|emb|CAA19068.1| alanine racemase Alr1 [Schizosaccharomyces pombe]
          Length = 375

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 188/388 (48%), Gaps = 49/388 (12%)

Query: 11  IDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFFVTS 64
           IDL A+ +N++    +    + +    A+VK NAYG G  ++A  L  + + +  F V+S
Sbjct: 8   IDLHAIAHNYNVAKQMMLQKNPSGHVLAIVKANAYGHGAVQVARFLLKHCSSIDGFGVSS 67

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           +EE ++LR      +I +L G    ++  K+I D N   +I S  Q+  +       + +
Sbjct: 68  IEEALELRHGGIYNKIVLLEGFFTEEDELKLIDDYNFSIIIHSEDQVNSF-------IKY 120

Query: 123 PY------ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVN 175
           P+       L++D+G NRLG +  + + F +  S NK +  +  I +H A AD   +  +
Sbjct: 121 PFNRPVEIWLKLDSGMNRLGFTPSQFMKFYNLLSNNKNVSNIGKI-THFAFADMLENPEH 179

Query: 176 SV-QLERFRTLISHYKGIEASLASSSGILLG--PNYHFQLTRPGISLYGGTDKINKSHPM 232
           ++ Q + F   ++H  G  +  A  S I+LG          R GI LYG +  ++K+   
Sbjct: 180 TLKQWDIFEKSVAHLPGPLS--AGGSAIILGWLNTVCTDWLRAGIMLYGISPFLSKNKDS 237

Query: 233 QTVVTAEAR--------IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
           +T  +   +        II ++    G+ + YGG+   TRD  + V A+GY DG+P  + 
Sbjct: 238 KTPESVNIKPAMKLVSTIISVKHVDKGQPIGYGGRYVATRDMKLGVVAMGYGDGFPRQVK 297

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKL 343
                       G    + G   PI+G+++MDM   D++D   ++ GD +  +G P++ +
Sbjct: 298 D-----------GCPVLVNGVKAPIVGRVSMDMLTVDLSDIPDVKPGDEVIFWGTPELTV 346

Query: 344 DDVA-LASGTTNYDLLVRIGTRYAKFYT 370
            D+A   S T+ Y+L+ ++  R    YT
Sbjct: 347 ADIAKYCSDTSPYELVTKLTRRVPLQYT 374


>gi|260888171|ref|ZP_05899434.1| alanine racemase [Selenomonas sputigena ATCC 35185]
 gi|260862200|gb|EEX76700.1| alanine racemase [Selenomonas sputigena ATCC 35185]
          Length = 385

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 166/389 (42%), Gaps = 41/389 (10%)

Query: 3   SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           S   +  +I+L A+++N+  +  AL G A+  AVVK NAYG G   +A     AG     
Sbjct: 15  SKRAVWAEINLGAIRHNYRVIGEALCGGAKLCAVVKANAYGHGALAVAKEAVAAGAAYLA 74

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           V ++ E  +LR       + VL  I P    E +  D     V  +V  L     + +  
Sbjct: 75  VATLSEAAELRRAGIGTPLLVLGLIDPLEAAEAVSLD-----VTQTVANLALAKAISAEA 129

Query: 120 VSHPYA----LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           ++        L +DTG  R+G + +EA     +       +L    SH A AD       
Sbjct: 130 LAQEKTAKLHLAIDTGMGRIGCTSEEASALARDIAVLPNIELEGAFSHFAMADVRDKAHA 189

Query: 176 SVQLERFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGG----- 222
             QL  F   +   + IE +        +A S+ IL  P  H  + R GI  YG      
Sbjct: 190 RGQLALF---LRATEAIEEAGVHLKLRHIAESAAILQMPEAHLDMVRAGIIQYGMYPSEE 246

Query: 223 -TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
               + ++ P++  +  +AR++ ++    G  + YG      R S IA   +GYADGY  
Sbjct: 247 VARDVRETSPLRPAMALKARVLFVKDVPEGFAIGYGCTWHAKRRSRIATLPLGYADGYIR 306

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PD 340
            LSG    H           I G   P++G+I MD  M D+TD   +  G  + +FG   
Sbjct: 307 ALSG--KAHVE---------ILGKTAPVVGRICMDQCMIDVTDIERVAEGTEVTLFGSAT 355

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  D+VA   GT NY++   I +R  + Y
Sbjct: 356 LSADNVAAWLGTINYEIPCLIASRVRRVY 384


>gi|110802018|ref|YP_698177.1| alanine racemase [Clostridium perfringens SM101]
 gi|123146221|sp|Q0SUN0|ALR_CLOPS RecName: Full=Alanine racemase
 gi|110682519|gb|ABG85889.1| alanine racemase [Clostridium perfringens SM101]
          Length = 386

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 169/390 (43%), Gaps = 57/390 (14%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  + E  
Sbjct: 11  EIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAIITEAD 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---YSKLMS-----CGVS 121
           +LR     A I +L     G   I F  NLI   + + Q  +   Y+K +S      G  
Sbjct: 71  ELRDAGITAPIMIL-----GYTPINFAENLIN--NEIEQTVYDVEYAKELSDFALKLGKK 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-------IISHLACADDPSSHV 174
               + +DTG  R+G    E         NK L   SL       + +H + +D+     
Sbjct: 124 AKIHIAIDTGMGRIGFLPNE------EGLNKVLEICSLPGVEVVGLFTHFSTSDEKDK-- 175

Query: 175 NSVQLERFRTLISHYKGIEAS-------LASSSGILLG-PNYHFQLTRPGISLYG--GTD 224
            +   E+F  L +  K +E +        AS+SG ++  P  +    R GI  YG   ++
Sbjct: 176 -TYTYEQFSKLTNFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSE 234

Query: 225 KINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           ++ K +  ++  +T +  +  +++      VSYG   K  + S IA   IGYADGY   L
Sbjct: 235 EVKKENLKLKPALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLL 294

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--I 341
           SG             K  IKG    ++G++ MD  M D+T    +++GD + + G +  +
Sbjct: 295 SG-----------KAKVIIKGQFANVIGRVCMDQCMVDVTHIEDVKIGDEVILLGEENGL 343

Query: 342 KLD--DVALASGTTNYDLLVRIGTRYAKFY 369
           K D  D+A   GT NY++L  I  R  + Y
Sbjct: 344 KFDANDMAEIMGTINYEILCMISHRVPRIY 373


>gi|268316557|ref|YP_003290276.1| alanine racemase [Rhodothermus marinus DSM 4252]
 gi|262334091|gb|ACY47888.1| alanine racemase [Rhodothermus marinus DSM 4252]
          Length = 382

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 165/383 (43%), Gaps = 43/383 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I L  L++N   +    G A   AVVK +AYG G   +A  L  AG++ F V  + E 
Sbjct: 7   VEIHLGHLRHNLEQVRRRLGPAEPIAVVKADAYGHGLVPVARTLQEAGIRHFAVARLSEA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS---CGVSHPYA 125
           V+LR       I +L           F  +L   ++   ++T  S L++   C  +  Y 
Sbjct: 67  VELREAGITGSILLL--------GAAFPEDLAACVAHEVEVTVSSPLLAEAVCAAAPRYG 118

Query: 126 -----LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                ++VDTG  RLG+  +EA +            L  + +HLA A+ P       QLE
Sbjct: 119 PLRVHVKVDTGMGRLGIWPEEAPEIIRRLEQTPGVTLVGLCTHLATAEQPGDPFVQEQLE 178

Query: 181 RFRTLISHYKGIEA--SLASSSGILLGPNYHF----QLTRPGISLYG--GTDKINKSHPM 232
           RF  L        A   +A+S  +   P+ ++    Q  R G +LYG     ++  +  +
Sbjct: 179 RFEQLWRQVGDAFAVRHVANSGALFTLPSSYWSDSRQQARIGAALYGYLPRPELPGADEL 238

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+   A I+ +R    G  +SYG          IAV   GY DG P  LS        
Sbjct: 239 RPVMRFVACIVQVRTVPPGTTISYGRTWTAPGWRRIAVVGAGYGDGIPRRLSNR------ 292

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITD---SLSIEVGDYIQIF---GPDIKLDDV 346
                G+  + G+  PI+G + MDMTM D+ D   +  ++ G+ +  F   GP I   +V
Sbjct: 293 -----GQVGLHGHRFPIVGAVCMDMTMIDLGDPETAPDVQEGEPVVFFGEGGPSIA--EV 345

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + T  Y+L      R  + Y
Sbjct: 346 ARWAETIPYELSCAAARRVPRRY 368


>gi|228907821|ref|ZP_04071674.1| Alanine racemase [Bacillus thuringiensis IBL 200]
 gi|228851823|gb|EEM96624.1| Alanine racemase [Bacillus thuringiensis IBL 200]
          Length = 408

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 169/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 146

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIQIPYIHSSNSAGSMELSNAFQNMVRVGIGVYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT
Sbjct: 316 KGYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGDEKIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|296130437|ref|YP_003637687.1| alanine racemase [Cellulomonas flavigena DSM 20109]
 gi|296022252|gb|ADG75488.1| alanine racemase [Cellulomonas flavigena DSM 20109]
          Length = 410

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 174/395 (44%), Gaps = 45/395 (11%)

Query: 4   NEF-LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N+F  R  +DL A++ N  ++ A +  A+  AVVK +AYG G    A A    G      
Sbjct: 15  NDFPARAVVDLGAVRGNVRALAAHAPTAQVMAVVKADAYGHGLVPSALAALEGGATWLGT 74

Query: 63  TSVEEGVKLRLY-TPQARIFV-LYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V E + LR      ARI   LY    P +E +  D +L  V S        +     G
Sbjct: 75  AQVPEALHLRRAGVTGARILTWLYAPGAPLREAVEADVDLS-VASRWALDDVVAAAREAG 133

Query: 120 VSHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            +    L+VDTG  R GL    L E L     +  + + ++  + SHLA AD P   V +
Sbjct: 134 RTARVHLKVDTGLGRNGLVPAQLPEVLTAALAAEAEGVVRVVGVWSHLAFADAPDHAVVA 193

Query: 177 VQLERF------------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
            Q   F            R  + H       LA+S+  L  P  H+ L RPGI++YG + 
Sbjct: 194 QQAGVFAEAVAAVEAAGARLEVRH-------LANSAATLTSPALHWDLVRPGIAVYGLSP 246

Query: 225 KINKSHPMQ----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
                 P +      +T EA++  ++   AG  VSYG +  +  D+++ V  +GYADG P
Sbjct: 247 VPQLGGPERFGLVPAMTFEAQLATVKPVPAGSGVSYGHEYVVPHDTVLGVVPVGYADGVP 306

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--- 337
              SG        V +GG+       + + G++ MD  + D+    +   GD + ++   
Sbjct: 307 RHASGSAERWGGPVQVGGR------RLGVAGRVCMDQVVLDLGPGATESAGDRVVLWGDG 360

Query: 338 ---GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              GP  +  D A  +GT +Y+L+ R+G R  + Y
Sbjct: 361 RDGGPTAQ--DWADVAGTISYELVTRLGARVPRTY 393


>gi|228965092|ref|ZP_04126189.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228794636|gb|EEM42145.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 408

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 171/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N +       + +    A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVNEFKKHVNDEKIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 146

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVV 236
            ++  +  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTARELGIQIPYIHSSNSAGSIELSNTFQNMVRVGIGVYGMYPSKEVDHTIVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGYALINGIRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
 gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
          Length = 825

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 173/377 (45%), Gaps = 36/377 (9%)

Query: 9   LKIDLTAL-KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ KN  H  + +  + +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 466 LEVNLNAVVKNLNHYRSFMKPHTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYSKLMSCGVS-HP 123
           GV LR     + I ++   +P     K +FD +L P + S   L     +    G++  P
Sbjct: 526 GVTLRKNGITSNIMIM---NPEMTAFKTMFDYDLEPEVYSFRLLDALVKEAEKEGITGFP 582

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACAD-DPSSHVNSV 177
             +++DTG +RLG    + +D       ++L + + II     SH   AD D     ++ 
Sbjct: 583 VHIKLDTGMHRLGFDPHKDMD----ELIRRLKRQNAIIPRSVFSHFVGADSDDFDTFSAQ 638

Query: 178 QLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q E F+      +      I   + +S+GI   P+    + R G+ LYG   + NK   +
Sbjct: 639 QFELFKLGADKLQAAFDHKILFHMDNSAGIEHFPDRQMDMCRLGLGLYGINSRNNKI--I 696

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V T +  I+ I +  AGE + Y  +  L RDSLIA   IGYADG    LS        
Sbjct: 697 NNVSTLKTTILQIHQLPAGESIGYSRKTYLERDSLIAAIPIGYADGLDRRLSN------- 749

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                G   + G     +G I MD+ M D+TD +  + GD ++IFG  + +  ++ A  T
Sbjct: 750 ---RRGYCLVNGQKAEYVGNICMDVAMIDVTD-IDCKEGDSVEIFGDHLPVTVLSDAIDT 805

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I  R  + Y
Sbjct: 806 IPYEVLTGISNRVKRVY 822


>gi|110597832|ref|ZP_01386115.1| alanine racemase [Chlorobium ferrooxidans DSM 13031]
 gi|110340557|gb|EAT59040.1| alanine racemase [Chlorobium ferrooxidans DSM 13031]
          Length = 383

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 156/370 (42%), Gaps = 62/370 (16%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL----------------Y 74
           R   +VK NAYG    K++ AL   G+ DF V ++ E ++L+                  
Sbjct: 44  RIMGIVKANAYGHNVHKVSAALETIGITDFGVANIHEAIELKTGGALKNPASILAFSSPL 103

Query: 75  TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNR 134
           T     F+ + I    +  + D+  +     +     ++K +S        L+VDTG  R
Sbjct: 104 TSHIECFLQHDI----DMTLCDSETLQAAEEIA--AAHNKTLSV------QLKVDTGMGR 151

Query: 135 LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY----- 189
           LG     A++      N +  QL  I +H A +  P     + QL  F+ L S Y     
Sbjct: 152 LGTHPSMAMELLRCMENAEHLQLKGIYTHFADSSSPGG-FTAQQLAEFKRLTSEYEHAVS 210

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---------MQTVVTAEA 240
           + +    A+S  IL  P     + RPGI LYG        HP         ++ V+  EA
Sbjct: 211 RTVCKHAANSGAILTAPGSWLDMVRPGILLYG-------YHPAKHTPLRLEVKPVMQVEA 263

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I I+   AG  +SY           IA  A GYADGY   LSG       +V + GK 
Sbjct: 264 KVIFIKTVEAGTTLSYNRTWSAPTLRSIATIAAGYADGYARVLSG-----KATVMINGKP 318

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLV 359
           +      P +G +TMD  M D+     ++ GD   +FG D    + ++  +GT +Y+ L 
Sbjct: 319 Y------PQVGTVTMDQIMVDLGTEHDVKKGDRATLFGWDGPSAEALSEIAGTISYETLC 372

Query: 360 RIGTRYAKFY 369
            + +R  + +
Sbjct: 373 SVSSRVKRIF 382


>gi|15677500|ref|NP_274656.1| alanine racemase [Neisseria meningitidis MC58]
 gi|20137239|sp|Q9JYC4|ALR_NEIMB RecName: Full=Alanine racemase
 gi|7226902|gb|AAF42000.1| alanine racemase [Neisseria meningitidis MC58]
 gi|316984996|gb|EFV63950.1| alanine racemase [Neisseria meningitidis H44/76]
 gi|325140795|gb|EGC63306.1| alanine racemase [Neisseria meningitidis CU385]
 gi|325199755|gb|ADY95210.1| alanine racemase [Neisseria meningitidis H44/76]
          Length = 352

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 175/375 (46%), Gaps = 43/375 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLT-----FYSKLMSCGV 120
           EG++LR       I +L G+    E + +   +L P + +  QL       + K +    
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLIRHWKKTVKV-- 119

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSH 173
                L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S 
Sbjct: 120 ----WLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESG 168

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           +  +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++
Sbjct: 169 MTEIQMEAFDLGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGGDDRLK 227

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+    RI   R       + YG     ++ + + + A GYADGYP         +SP 
Sbjct: 228 PVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPV 283

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
                   + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT 
Sbjct: 284 A-------VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTI 335

Query: 354 NYDLLVRIGTRYAKF 368
            Y+L+  I  + AKF
Sbjct: 336 PYELMCNI--KRAKF 348


>gi|170754426|ref|YP_001781290.1| alanine racemase [Clostridium botulinum B1 str. Okra]
 gi|169119638|gb|ACA43474.1| alanine racemase [Clostridium botulinum B1 str. Okra]
          Length = 389

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 174/389 (44%), Gaps = 53/389 (13%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +++L  L  N  ++          AVVK N YG G   IA  L   G     V  + E +
Sbjct: 11  EVNLDNLSYNMRNIKNKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLSVACLSEAI 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPYAL 126
           +LR       I +L    P   + I D N+ PV+ S     QL+  + L +  V    A 
Sbjct: 71  ELREGGINCPINILGITPPTLFEDIIDYNIEPVVFSYDCANQLSKAASLKNRIVKTHIA- 129

Query: 127 QVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
            VDTG  RLG      SL+E          K++  LS I      SH + +D+     + 
Sbjct: 130 -VDTGMGRLGFDPTVESLEEI---------KRIQDLSNIKIEGLCSHFSSSDEKDKSYSE 179

Query: 177 VQLERFRTLISHYKGIEASL-------ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
            Q + F+      K IE ++       ++S+ I+  P+ +    R GI LYG   + ++N
Sbjct: 180 YQFKIFQNF--RKKLIEMNMKIPIYHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVN 237

Query: 228 KSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           K +  ++ V+T +A I+ I+   +G+ V Y  + K  R S IA+  +GY DGY   LS  
Sbjct: 238 KENLHIKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR 297

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                      GK  I G   PI+G I MD  M D+TD   ++VGD + I G D    ++
Sbjct: 298 -----------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLR 346

Query: 343 LD--DVALASGTTNYDLLVRIGTRYAKFY 369
            D  D+A   G T+ +++  I  R  + Y
Sbjct: 347 YDAEDIASKVGMTSGEIMSIISKRVPRVY 375


>gi|306834227|ref|ZP_07467347.1| alanine racemase [Streptococcus bovis ATCC 700338]
 gi|304423800|gb|EFM26946.1| alanine racemase [Streptococcus bovis ATCC 700338]
          Length = 368

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 177/372 (47%), Gaps = 29/372 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL  +  N  ++ A +  + +  AVVK NAYG G   +A A+++  V  F V++++E +
Sbjct: 13  IDLDVICQNIDAVKANIPQDKKAFAVVKANAYGHGATNVAHAIHHL-VDGFCVSNIDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR    +  I +L  I P +  +  D ++   ++S   L   ++           L+VD
Sbjct: 72  ELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGISLAGLDVHLKVD 131

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G+ SL EA +   N   K    ++ I +H A AD+      + QLE F  L+ +
Sbjct: 132 SGMGRIGVRSLDEAENVIAN-LKKAGANVAGIFTHFATADEADDTKFNEQLEFFTNLVDN 190

Query: 189 YKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
                A +  ++S+  +      F L R GI +YG    GT+ ++  +P++  ++ E+ +
Sbjct: 191 LSDKPAIVHASNSATSIWHSETIFNLVRLGIVMYGLNPSGTE-LDLPYPLKPALSLESSL 249

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + ++   AG  V YG      ++  IA   IGYADG+   L G       SV + G+   
Sbjct: 250 VHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGF------SVLVNGE--- 300

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358
                 I+G+++MD     + + L I  G  + + G +    I   D+A   GT NY++L
Sbjct: 301 ---FCEIVGRVSMDQITIRLPEKLPI--GTKVTLIGQESDKVISATDLAQKRGTINYEVL 355

Query: 359 VRIGTRYAKFYT 370
             +  R  + Y+
Sbjct: 356 CLLSDRIPRVYS 367


>gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 825

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 175/379 (46%), Gaps = 39/379 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L+AL  N +   + L  + +   ++K N YGLG  ++A  L +  V    V   +E
Sbjct: 465 LEVNLSALVQNLNFYRSYLKQDTKLVCMIKANGYGLGAVEVAKTLQDHRVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYSKLMSCGVS-HP 123
           GV LR +   A I ++   +P     K IFD  L P + S   L     +    G++ +P
Sbjct: 525 GVALRKHGVTANIMIM---NPEMSSFKTIFDYELEPEVYSFRLLEALIEEAEKEGITQYP 581

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL--SLIISHLACADDPSSHVNSVQLER 181
             +++DTG +RLG      ++   +   K    +    + SH   +D  S H +    ++
Sbjct: 582 IHIKLDTGMHRLGFDPINDIERLISILKKHQNTIIPRSVFSHFVGSD--SDHFDDFSAQQ 639

Query: 182 FRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F    +  K ++++          +S+GIL  P+    + R G+ LYG   + N+   + 
Sbjct: 640 FSLFDTASKQLQSAFTHHILRHINNSAGILHFPDRQLDMCRLGLGLYGINSRDNQ--IIN 697

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V +    I+ + K  + E V Y  +  + R++++A   IGYAD       GLD      
Sbjct: 698 NVCSLRTTILQMHKIGSNETVGYSRKGTVERETIVAAIPIGYAD-------GLDRR---- 746

Query: 294 VFLGGKG---FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
             LG +     + G+  P LG I MD+ M D+TD +  + GD ++IFG ++ +  ++   
Sbjct: 747 --LGNRNCYCLVNGHKAPYLGNICMDVAMIDVTD-IPCKEGDSVEIFGDNLPVTVLSDTL 803

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++L  I  R  + Y
Sbjct: 804 DTIPYEVLTSISERVKRVY 822


>gi|254383132|ref|ZP_04998486.1| alanine racemase [Streptomyces sp. Mg1]
 gi|194342031|gb|EDX22997.1| alanine racemase [Streptomyces sp. Mg1]
          Length = 382

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 169/377 (44%), Gaps = 28/377 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A++ N  ++   +  A+  AVVK + YG G    A A  +AG       + +E +
Sbjct: 14  EIDLDAVRGNVRALRERAPRAQVMAVVKADGYGHGAVPCARAALDAGAAWIGTATPQEAL 73

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQV 128
            LR     A +        G  +   +  +   +S++  L    +   + G +    L+ 
Sbjct: 74  ALRAAGIDAPLMCWLWTPGGPWREAVEAGIDVSVSALWALDEVRAAARAAGRTARIQLKA 133

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G    +  +    +   +     +++ + SH ACAD+P      +QL  FR +
Sbjct: 134 DTGLGRAGCQPADWAELVGAAVAAQAEGTVRVTGLWSHFACADEPGHPSVPLQLAAFRDM 193

Query: 186 ISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVV 236
           +++ +  G+E     +A+S   L  P  HF L R G+++YG +       P Q      +
Sbjct: 194 LAYAEKEGVEPEVRHIANSPATLTLPESHFDLVRCGLAVYGVSPAPELGTPAQLGLRPAM 253

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +A + L++   AG  VSYG       D+ +A+   GYADG P   SG        V +
Sbjct: 254 TLKASVALVKAVPAGHGVSYGHHHVTAADTRLALIPAGYADGVPRHASGRG-----PVLV 308

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
           GGK      +  + G++ MD  + D+     +E GD   +FGP    +   +D A A+ T
Sbjct: 309 GGK------VRTVAGRVAMDQFVVDLGPDDLVEAGDEAVLFGPGDGGEPTAEDWAQAADT 362

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y+++ RIG R  + Y
Sbjct: 363 IAYEIVTRIGGRVPRVY 379


>gi|262038156|ref|ZP_06011553.1| alanine racemase [Leptotrichia goodfellowii F0264]
 gi|261747804|gb|EEY35246.1| alanine racemase [Leptotrichia goodfellowii F0264]
          Length = 363

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 166/374 (44%), Gaps = 35/374 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I++  L +N   +  ++      AV+K + YG G EKI  AL   G+++F V + EE  
Sbjct: 6   EINIKNLYDNIKEIEKITSKEHIMAVIKADGYGHGMEKICEALIKTGIKNFAVATSEEAH 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           K+R       I +L  I       + + N+  +I+   ++ +  K   C       +++D
Sbjct: 66  KIREIDDSVNILILGPIENDHANSVSEKNIYFMITDFQEIDYLEK-NKCNTE--VFIKID 122

Query: 130 TGFNRLGLSLQE----ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           TG  R+G  LQE    A       + K +G  S   S  +           +Q++RF  +
Sbjct: 123 TGMGRVGFQLQEIEKLAETLKRCKYVKPIGVFSHFSSSDS-----DVDYTDLQIKRFEEV 177

Query: 186 ISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSHPMQTVVTAE 239
            +  K    +     L +S G L      +   R GI +YGG T++  K +  + V++  
Sbjct: 178 SNKLKKELPTVKYRHLLNSFGSLRFQKNKYDFIRAGIIIYGGVTEEETKPYKFKPVMSLY 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A+I  I+       +SYG      +   +A  +IGYADG    LS              K
Sbjct: 238 AKISYIKTLSEDSYISYGNTYLGKKGETLATVSIGYADGVRRDLS-------------NK 284

Query: 300 GFI--KGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNY 355
           G++  KG+   I+G++ MD  +  + + L+ E   GD ++ FG +I + DVA    T +Y
Sbjct: 285 GYVYYKGHKCNIVGRVCMDQLVIKLPEKLAKEAAKGDKVEFFGENINVVDVANLCNTISY 344

Query: 356 DLLVRIGTRYAKFY 369
           ++L  I  R  + Y
Sbjct: 345 EILCGISQRVPRIY 358


>gi|154686685|ref|YP_001421846.1| YncD [Bacillus amyloliquefaciens FZB42]
 gi|154352536|gb|ABS74615.1| YncD [Bacillus amyloliquefaciens FZB42]
          Length = 393

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 181/389 (46%), Gaps = 49/389 (12%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL A+K N  ++   +   ++  AVVK NAYG G  ++A     +G  +  V SVEE
Sbjct: 10  IEVDLDAIKKNVRAIRRHIPNTSKIMAVVKANAYGHGSVEVARQALESGASELAVASVEE 69

Query: 68  GVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNL-------IPVISSVPQLTFYSKLMSC 118
           G+ LR     A I VL    +   ++  +++  L       I   + + +    SK +S 
Sbjct: 70  GIVLRRAGITAPILVLGFTALSCVKKSAVWNITLSAFQVSWIKKANRILEKEADSKRLSI 129

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNS 176
            ++      VDTG  RLG+  +E L     +  K    LS   I +H + AD+P + +  
Sbjct: 130 HIN------VDTGMGRLGVRTEEDLLAVVKAL-KSSTYLSWDGIFTHFSTADEPDTELTM 182

Query: 177 VQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG----GTDKIN 227
           +Q E+F + +   K  + +L      +++  +  P +   + R GI LYG     + K  
Sbjct: 183 LQHEKFISFLRFLKNQDITLPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSASIKEL 242

Query: 228 KSHPMQTVVTAEARIILIRKALAG-ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
               +   ++ +ARI  ++  +     VSYG         +IA   IGY DGY   LS  
Sbjct: 243 NLVDLTPALSLKARIAYVKAMVTDPRTVSYGATYIAEPGEIIATIPIGYGDGYSRALS-- 300

Query: 287 DSEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPD 340
                       +GFI  +G  VP+ G++TMDM M  + ++   + G+ + I+    G +
Sbjct: 301 -----------NRGFILHRGRRVPVAGRVTMDMIMVSLGENEGKQ-GEEVVIYGKQQGAE 348

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I +D++A   GT +Y++L  +  R  +FY
Sbjct: 349 ISVDEIAEMLGTISYEVLSVLSRRVPRFY 377


>gi|328948124|ref|YP_004365461.1| Alanine racemase [Treponema succinifaciens DSM 2489]
 gi|328448448|gb|AEB14164.1| Alanine racemase [Treponema succinifaciens DSM 2489]
          Length = 383

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 162/387 (41%), Gaps = 35/387 (9%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  I L  LKNN   +   L    +    VK +AYG G    A A   AG     V + E
Sbjct: 5   RALIHLGNLKNNIIEIKKCLKPETKMCVAVKADAYGHGAVPCARAALEAGADYLSVATYE 64

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSH-PY 124
           EGV LR     + I +L    P + + +    + P +     +  F S     G+     
Sbjct: 65  EGVVLRNAGIASPILMLSLCSPDEVEEVVSAGITPFVFDEEYIELFSSACKKLGIKKFEV 124

Query: 125 ALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L VDTG  R+G    EA +      N  N  LG  +   +   C  +        Q E 
Sbjct: 125 HLAVDTGMGRIGCLPSEAGNIALKIKNCGNLVLGGTATHFALSDCVSEKGKSYTKFQFEN 184

Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSH----- 230
           F   I++ K +         A+S+  L  P+ H  + RPGI +YG   D+++K +     
Sbjct: 185 FLEAINNIKSVGINPGICHCANSATTLDSPDMHLDMVRPGIIVYGYYADEVSKEYLVSKG 244

Query: 231 ---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+T E+ +  IRK   G+   YG + +   D+ + V  IGYADG+        
Sbjct: 245 KNVELKPVMTLESCVSSIRKFEKGKFAGYGCRWEAKSDTNVGVVPIGYADGWFRRF---- 300

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKL-- 343
           SE    V + GK +      PI G+I MD  M D+    + +  D   +FG   D  L  
Sbjct: 301 SECGVKVAVNGKNY------PICGRICMDQCMIDLGADCTAKRWDKAVLFGDSSDGALQT 354

Query: 344 -DDVALASGTTNYDLLVRIGTRYAKFY 369
            DD+A  +GT +Y++   I  R  + +
Sbjct: 355 ADDIAHLTGTISYEITCGISKRVPRVF 381


>gi|228952487|ref|ZP_04114567.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229069638|ref|ZP_04202925.1| Alanine racemase [Bacillus cereus F65185]
 gi|229150330|ref|ZP_04278548.1| Alanine racemase [Bacillus cereus m1550]
 gi|229178496|ref|ZP_04305862.1| Alanine racemase [Bacillus cereus 172560W]
 gi|228605004|gb|EEK62459.1| Alanine racemase [Bacillus cereus 172560W]
 gi|228633139|gb|EEK89750.1| Alanine racemase [Bacillus cereus m1550]
 gi|228713478|gb|EEL65366.1| Alanine racemase [Bacillus cereus F65185]
 gi|228807182|gb|EEM53721.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 408

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 146

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A   GT
Sbjct: 316 KGYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|168212492|ref|ZP_02638117.1| alanine racemase [Clostridium perfringens CPE str. F4969]
 gi|170716170|gb|EDT28352.1| alanine racemase [Clostridium perfringens CPE str. F4969]
          Length = 386

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 172/391 (43%), Gaps = 59/391 (15%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  + E  
Sbjct: 11  EIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAIITEAD 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---YSKLMS-----CGVS 121
           +LR     A I +L     G   I F  NLI   + + Q  +   Y+K +S      G  
Sbjct: 71  ELRDAGITAPIMIL-----GYTPINFAENLIN--NEIEQTVYDVEYAKELSDFALKLGKK 123

Query: 122 HPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSL-------IISHLACADDPSSH 173
               + +DTG  R+G L  +E L       NK L   SL       + +H + +D+    
Sbjct: 124 AKIHIAIDTGMGRIGFLPNKEGL-------NKVLEICSLPGVEVIGLFTHFSTSDEKDK- 175

Query: 174 VNSVQLERFRTLISHYKGIEAS-------LASSSGILLG-PNYHFQLTRPGISLYG--GT 223
             +   E+F  L +  K +E +        AS+SG ++  P  +    R GI  YG   +
Sbjct: 176 --TYTYEQFSKLTAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPS 233

Query: 224 DKINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
           +++ K +  ++  +T +  +  +++      VSYG   K  + S IA   IGYADGY   
Sbjct: 234 EEVKKENLKLKPALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRL 293

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
           LSG             K  IKG    ++G++ MD  M D+T    +++GD + + G +  
Sbjct: 294 LSG-----------KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENG 342

Query: 341 IKLD--DVALASGTTNYDLLVRIGTRYAKFY 369
           +K D  D+A   GT NY++L  I  R  + Y
Sbjct: 343 LKFDANDMAEIMGTINYEILCMISHRVPRIY 373


>gi|296111091|ref|YP_003621472.1| alanine racemase [Leuconostoc kimchii IMSNU 11154]
 gi|295832622|gb|ADG40503.1| alanine racemase [Leuconostoc kimchii IMSNU 11154]
          Length = 374

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 171/377 (45%), Gaps = 33/377 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++IDL A++ N   +   +   R  AVVK +AYG G   +  ALY+ G++DF V ++ E 
Sbjct: 14  IEIDLKAIQYNARLIMKHADATRMIAVVKADAYGHGAVAVTKALYDIGIRDFAVATISEA 73

Query: 69  VKLRLYTPQARI-FVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           + LR          +L G+    Q K++ +  L+P + ++  L      ++        L
Sbjct: 74  LILRQEVDHDDFNILLLGVQDVSQVKLMVENRLMPAVGTLEWLYQAVSFLTDSQILDVHL 133

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
            VDTG  R+G + Q +  +  H  F +K  QL L  + +H A ADD +      Q+ +  
Sbjct: 134 AVDTGMGRMGANSQADVTELYH--FIQKSSQLRLNGVFTHFATADDDNEAYYKQQVTKLY 191

Query: 184 TLISHYKGIEAS---LASSSGILLGPN-YHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
             ++   GI      LA+S   L   N       R G  LYG   G+  ++ S  ++ V+
Sbjct: 192 QWVNG-AGIPKKYWHLANSGSALWHHNEIDTDTIRVGSVLYGFNPGSPALDMSIKLKNVL 250

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++R+  + +  AGE VSYG          +A   IGYADGY   + G+          
Sbjct: 251 SLKSRMGAVHQLQAGESVSYGATYTAEHAQWVATLPIGYADGYLRRMGGM---------- 300

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             K  + G    ++G+ITMD  +  +       VG  + + G D    I ++D A  +GT
Sbjct: 301 --KVLVSGEEAQVVGRITMDQIVIALDKQYP--VGTEVTLIGRDGDEKITIEDFATYAGT 356

Query: 353 TNYDLLVRIGTRYAKFY 369
             +++L   G R  + Y
Sbjct: 357 IPHEILTSFGVRLPRIY 373


>gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
 gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
          Length = 857

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 173/377 (45%), Gaps = 36/377 (9%)

Query: 9   LKIDLTAL-KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ KN  H  + +  + +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 498 LEVNLNAVVKNLNHYRSFMKPHTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVADE 557

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYSKLMSCGVS-HP 123
           GV LR     + I ++   +P     K +FD +L P + S   L     +    G++  P
Sbjct: 558 GVTLRKNGITSNIMIM---NPEMTAFKTMFDYDLEPEVYSFRLLDALVKEAEKEGITGFP 614

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACAD-DPSSHVNSV 177
             +++DTG +RLG    + +D       ++L + + II     SH   AD D     ++ 
Sbjct: 615 VHIKLDTGMHRLGFDPHKDMD----ELIRRLKRQNAIIPRSVFSHFVGADSDDFDTFSAQ 670

Query: 178 QLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q E F+      +      I   + +S+GI   P+    + R G+ LYG   + NK   +
Sbjct: 671 QFELFKLGADKLQAAFDHKILFHMDNSAGIEHFPDRQMDMCRLGLGLYGINSRNNKI--I 728

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V T +  I+ I +  AGE + Y  +  L RDSLIA   IGYADG    LS        
Sbjct: 729 NNVSTLKTTILQIHQLPAGESIGYSRKTYLERDSLIAAIPIGYADGLDRRLSN------- 781

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                G   + G     +G I MD+ M D+TD +  + GD ++IFG  + +  ++ A  T
Sbjct: 782 ---RRGYCLVNGQKAEYVGNICMDVAMIDVTD-IDCKEGDSVEIFGDHLPVTVLSDAIET 837

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I  R  + Y
Sbjct: 838 IPYEVLTGISNRVKRVY 854


>gi|325964088|ref|YP_004241994.1| alanine racemase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470175|gb|ADX73860.1| alanine racemase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 405

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 172/393 (43%), Gaps = 63/393 (16%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+++N   + A +  A+  AVVK +AYG G   +A A   AG     V  + E + 
Sbjct: 26  IDLDAIRHNVRRLAAAASPAKVMAVVKADAYGHGAVPVARAALEAGASWLGVAHISEALA 85

Query: 71  LR-----------LYTPQARI--FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           LR           L+TP +     V  G+  G      D     ++++  +    +++  
Sbjct: 86  LRAAGIDAPLLAWLHTPDSNFGAAVAAGVDIGCSGWELDR----IVAAAREQERPARIH- 140

Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-------EALDFTHNSFNKKLGQLSLIISHLACADDP 170
                   L+VDTG  R G +L        EA+++      + +G    I SHLA AD+P
Sbjct: 141 --------LKVDTGLGRNGATLDTWDHIVGEAMEYQDQGLLRVVG----IFSHLAVADEP 188

Query: 171 SSHVNSVQLERFRTL--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
                  QL  FR +  ++   G++     LA++   L  P+ HF L R G+ +YG +  
Sbjct: 189 ERPETDQQLATFREVLAVAEDAGVDPEVRHLANTPATLSRPDTHFDLVRVGLGIYGLSPF 248

Query: 226 INKSHP---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             +S     ++  +T    +   ++   G+ VSYG +   T  S + +  +GYADG    
Sbjct: 249 AGQSSAELGLRPAMTLRTLVSQCKEVPDGQGVSYGLRYHTTGASTLGLIPMGYADGV--- 305

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE--VGDYIQIFGPD 340
                    P +  GG   + G   P++G+I MD  + D   ++     +G   ++FG  
Sbjct: 306 ---------PRIATGGPVRVAGRTYPVVGRIAMDQMVIDFGSTVQAGSLLGAEAELFGDG 356

Query: 341 IK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
                  DD A A+GT NY+++ RI  R  + +
Sbjct: 357 SDGGPTADDWARAAGTINYEIVTRISPRVPRCF 389


>gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4]
 gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4]
          Length = 819

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 168/373 (45%), Gaps = 29/373 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L AL +N +   A L    +   +VK  AYG G  ++A  L +       V   +E
Sbjct: 461 LEVNLNALIDNLNYFRAKLRPETKIMCMVKAFAYGSGAVEVARTLQHHRCDYLAVAVADE 520

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVS-HPYA 125
           G +LR    +  I V+     G   +IFD  L P I S   L  F +     G++ +P  
Sbjct: 521 GAELRREGIRIPIVVM-NPEKGSFGMIFDNKLEPEIYSFRLLDAFIASAEKLGLTDYPIH 579

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++D+G +RLG   +   +      N+   ++  + SHL+ +D+         Q++ F  
Sbjct: 580 IKIDSGMHRLGFEPKNMEELLTRLKNQNQVKVRSVFSHLSGSDEAKFDSFTKQQIDTFTD 639

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
                 G     I   + +S+GI     Y F + R GI  YG +     S P   ++ V 
Sbjct: 640 CADQLSGAFSHNIMRHILNSAGIERFSEYQFDMVRLGIGHYGIS-----SLPDVKLKQVC 694

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             +  I+ I+   AGE V Y  +  +  D  IA+  IGYADG+   L             
Sbjct: 695 ALKTIILQIKTVKAGETVGYSRKGIVNEDKRIAIIPIGYADGFDRKLGN----------G 744

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           GG+  + G    ++G + MD+ M D+T+  + E GD ++IFG ++ + +VA    T  Y+
Sbjct: 745 GGEVLVNGKRAKVIGNVCMDLVMIDVTNVEANE-GDSVEIFGDNLTISEVAGWLKTIPYE 803

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 804 VLTSVSRRVKRVY 816


>gi|307701631|ref|ZP_07638647.1| alanine racemase [Mobiluncus mulieris FB024-16]
 gi|307613134|gb|EFN92387.1| alanine racemase [Mobiluncus mulieris FB024-16]
          Length = 457

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 177/398 (44%), Gaps = 65/398 (16%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  +DL A + N   M   +  ++  A+VK +AYG G E+++ A   AG Q   V  V 
Sbjct: 12  VRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVAKVA 71

Query: 67  EGVKLRLY-------------TP-----QARIFV--LYGIHPGQEKIIFDTNLIPV---- 102
           E  +LR +             TP     ++R+F     G+   Q   IF     P     
Sbjct: 72  EAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTVQRPRIFAWLYTPSTDLK 131

Query: 103 ----------ISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
                     +S++ QL   S    + G+     L+VDTG  R G +L E  +    +  
Sbjct: 132 STIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKLARA 191

Query: 152 KK---LGQLSLIISHLACADDPSSHVNSV---QLERFRTL--ISHYKGIEASL---ASSS 200
           ++   L ++S I SH A +D+PS+   +    QL  F     I+   G++  L   A++ 
Sbjct: 192 RERSGLVEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVSGLQPKLRHMAATG 251

Query: 201 GILLGPNYHFQLTRPGISLYG--GTDKINKSHPM--QTVVTAEARIILIRKALAGELVSY 256
            IL  P  HF L R GIS YG     +I  +  +  + V+  E  +  ++K  AG  VSY
Sbjct: 252 AILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSAVSY 311

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           GG+      + +A+  IGYADG+   L G             K ++ G++ P++G+I MD
Sbjct: 312 GGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRIPMD 360

Query: 317 MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             + ++  ++    GD I    P +K  D+A+  G  N
Sbjct: 361 QIILNLGSAID-GAGDLIP---PPLKPGDLAVIFGDPN 394


>gi|146743626|gb|ABQ43044.1| alanine racemase [Borrelia burgdorferi]
          Length = 355

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 155/348 (44%), Gaps = 27/348 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 23  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 82

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 83  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 140

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 141 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 198

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE +S
Sbjct: 199 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGEKIS 258

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 259 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 307

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           ++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IGT
Sbjct: 308 NLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGT 355


>gi|171909526|ref|ZP_02924996.1| alanine racemase [Verrucomicrobium spinosum DSM 4136]
          Length = 388

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 185/392 (47%), Gaps = 59/392 (15%)

Query: 10  KIDLTALKNNWHSMNALSGNARTA------AVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +I LTAL++N       +G ART       AVVK NAYG G   +A AL    V  F V 
Sbjct: 18  EISLTALRHN-------AGVARTQSGHDLMAVVKANAYGHGAVTVARALQEQ-VAVFGVA 69

Query: 64  SVEEGVKLR---LYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMS-C 118
           +++E ++LR   L TP     +L G    +E++          I+S+ +   +S+L    
Sbjct: 70  NLQEALELRSAGLDTP----ILLLGTCLAEEQVPALRAGFHICINSLAEARAWSELAGRL 125

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNS 176
           G +    + +DTG  R+G    E  + T  +    L  +S   + +HL   D+ +     
Sbjct: 126 GTTALGHVVLDTGMGRMGFIEPEWTEDTVRAL-VALPHISWEGLATHLPSPDEDAGFTRR 184

Query: 177 VQLERFR--TLISHYKGIE---ASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINKS 229
            Q+E F     ++   G++     LASS+G+L  P  H    L RPG+ LYG  D +  +
Sbjct: 185 -QIELFHQSVRLAQVSGLQPRWVDLASSAGLLGYPAGHEFCNLVRPGLMLYG-VDPLAST 242

Query: 230 -------HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                    ++ V+T + R+IL+R+   G  +SYG      R + +A  A GYADGYP  
Sbjct: 243 GLGDPYQEKLRPVLTWKTRVILVRELPEGHGISYGRSHVTRRPTRVATLACGYADGYPRQ 302

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD---SLSIEVGDYIQIFG- 338
           +SG ++      F+     + G   P+LG++TMD  M D+TD      +  GD + + G 
Sbjct: 303 VSGKNA------FV----LLHGQRCPLLGRVTMDQIMVDVTDFPAGQPVVPGDEVVLLGT 352

Query: 339 ---PDIKLDDVALASGTTNYDLLVRIGTRYAK 367
                I  ++VA  +GT ++ +   I  R A+
Sbjct: 353 QGEAKISAEEVADKAGTISWHVFTGITARVAR 384


>gi|218961188|ref|YP_001740963.1| Alanine racemase (partial match, alr-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729845|emb|CAO80757.1| Alanine racemase (partial match, alr-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 629

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 169/373 (45%), Gaps = 29/373 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL+A + N + + + L    +   +VK +AYG G  +I+      G     V + EE
Sbjct: 12  VEIDLSAFRTNLNILKSFLEPQQQFMMIVKADAYGHGAREISKIACEEGAVYLGVANPEE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
           G  LRL   QA + +L      +   I D +L   +SS+      +K            L
Sbjct: 72  GRLLRLQGCQAPVLILSPCLKNEINTILDNDLAVNVSSLDFARALNKTAKTKNKQAVVHL 131

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSL--IISHLACAD-DPSSHVNSVQLER 181
           +VDTG +R G+   E +DF    FNK  K+  L +  + +H A A+ DP    +  Q ER
Sbjct: 132 KVDTGMHRSGILDSEFIDF----FNKIAKMDNLLIEGVFTHFASAENDP--EFSKQQEER 185

Query: 182 FRTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           F  +I +  +      + +S+ ++ G   H  L R GI  YG     NK   +Q V+T +
Sbjct: 186 FWNIIDNLPFTPTYLHIDNSNALVNGLGKHSNLVRLGIMAYGIQVPGNKDIALQPVMTFK 245

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +  I+    GE V Y       +D L  +  IGYADGY   LS             G 
Sbjct: 246 TILSQIKHIAKGESVGYNRSWTAKKDCLYGILPIGYADGYDFMLSNC-----------GV 294

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNYD 356
            F+   +  ++G+I+MDM   D++      +GD   + G    + + +++    G  +Y+
Sbjct: 295 VFLDNKICNVIGRISMDMICVDLSPIEHPAIGDVAILLGGSALETRAENLVSKYGGNSYE 354

Query: 357 LLVRIGTRYAKFY 369
           LL ++G R  ++Y
Sbjct: 355 LLCQVGRRAKRYY 367


>gi|237750219|ref|ZP_04580699.1| alanine racemase [Helicobacter bilis ATCC 43879]
 gi|229374113|gb|EEO24504.1| alanine racemase [Helicobacter bilis ATCC 43879]
          Length = 375

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 162/353 (45%), Gaps = 33/353 (9%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG--QEK 92
           V+K +AYG G  K+       G+    V + +E ++LR +  QA+I VL    P    E 
Sbjct: 39  VLKADAYGHGALKLGKLALTHGIYQVGVATFDEAMELREHLTQAKILVLGYTPPSVVDEA 98

Query: 93  IIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSF 150
           I  D  L +  I    +L   +K  +        +++DTG NR+G     ++L+  H   
Sbjct: 99  IKHDIELCVYDIDMARELNKSAKRQN--KQAKIHIKLDTGMNRIGYQCDSKSLNEIHEI- 155

Query: 151 NKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL---ASSSGILLG 205
             KL  + +  I +H A AD    ++N +Q ERF   +S     E +L   A+S+ I+  
Sbjct: 156 -AKLSNVFIRGIFTHFASADCDLGYLN-LQYERFCAFVSLLPKHEDTLLHCANSASIMNA 213

Query: 206 PNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262
              H  + R GI  YG         +   ++ V++  A I+ I++    E VSYGG    
Sbjct: 214 SKTHLDMVRLGIIAYGLKPSFAMDMQGLELKPVMSFRAHIVHIKEVDTNECVSYGGTFIT 273

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
            + + IA   +GYADGY   LS              +  I+G    ++G I MD  M D+
Sbjct: 274 HKKTKIATLPVGYADGYMRLLSN-----------KAEVLIRGKRARVIGNICMDQCMVDV 322

Query: 323 TDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +D   ++VGD   +FG D     + +D++A   GT NY+L   +  R A+ Y 
Sbjct: 323 SDIEEVKVGDCAVLFGYDDFGNILSVDELAAHIGTINYELTCAVSKRVARVYV 375


>gi|320536161|ref|ZP_08036211.1| alanine racemase [Treponema phagedenis F0421]
 gi|320146997|gb|EFW38563.1| alanine racemase [Treponema phagedenis F0421]
          Length = 379

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 157/363 (43%), Gaps = 52/363 (14%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL------------ 83
           VK +AYG G  ++A A   AGV    V S++EG+ LR     A I  L            
Sbjct: 34  VKADAYGHGAFRVAVAAIRAGVSSLAVASIQEGIDLRNAGIVAPIISLSLPILEEIHSII 93

Query: 84  -YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142
            Y IHP    ++ D+  I  ++        +++ +    H   L++DTG NR+G   ++A
Sbjct: 94  EYNIHP----LVIDSEFIHALNE-----EAARMKTVQAVH---LKIDTGMNRIGCKPEDA 141

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFRTLIS--HYKGIEASL- 196
           +            +L  + +H + AD  S         QL  F   +     KGI+  + 
Sbjct: 142 ITLAAEIVQLPNLKLEGVCTHFSVADSVSPENIAYTKKQLALFTQTLDALRAKGIDPGIV 201

Query: 197 --ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIILIRKALAGE 252
             A+S  +L  P   F + RPGI +YG   +D +    P++ V+   ++++LI+    G 
Sbjct: 202 HAANSGAVLQYPEAQFDMVRPGIIVYGYPPSDCLADKIPLKPVMELVSQVVLIKCTPQGS 261

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY  +    +D+ IA   IGYADG    LS            G K  I     PI+G+
Sbjct: 262 DISYDRKWHADKDTFIATLPIGYADGLMRALSP-----------GLKVRIGDTFYPIVGR 310

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGP------DIKLDDVALASGTTNYDLLVRIGTRYA 366
           I MD  M D+    ++   D   IFGP      +    ++A  +GT  Y++   I  R  
Sbjct: 311 ICMDQCMVDLGSEPTVTRWDTAVIFGPSENSVKNNSAKELATIAGTIPYEITCDINKRVP 370

Query: 367 KFY 369
           + Y
Sbjct: 371 RVY 373


>gi|260061407|ref|YP_003194487.1| Mur ligase domain-containing protein/alanine racemase
           [Robiginitalea biformata HTCC2501]
 gi|88785539|gb|EAR16708.1| Mur ligase domain protein/alanine racemase [Robiginitalea biformata
           HTCC2501]
          Length = 370

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 162/376 (43%), Gaps = 37/376 (9%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL +N+  + + L    R   VVK   YG     IA  L   G     V   +E
Sbjct: 9   LEIDLGALAHNYRFLRDRLRPETRFLGVVKAYGYGSDSLAIALKLEALGADYLAVAFTDE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125
           G  LR    +  I VL+    G + +I    L P + S+  L  +  +         P  
Sbjct: 69  GTFLREGGVRLPILVLHPQPSGLDDLI-THRLEPALYSLRILKMFLETARRREARGFPVH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL----SLII----SHLACADDPSSHV-NS 176
           L+ +TG NRLG        F  N      GQL    SL I    SHLA +DDP S+    
Sbjct: 128 LKFNTGLNRLG--------FWENDVEWIAGQLEGESSLTIRSAFSHLAASDDPGSNTFTQ 179

Query: 177 VQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q++ F  +++  +          L ++SGIL  P+  + + R GI LYG  +       
Sbjct: 180 RQIKSFAAIVADIREQLPGTPFFHLLNTSGILNFPDAQWDMVRSGIGLYGYGNDPEVDPL 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V     RI  + K   GE V Y    +       A   IG+ADG          EH 
Sbjct: 240 LRPVARLRTRISQLHKIEPGEWVGYNKGYRAADFRTTATLPIGHADGIGRIYG---KEH- 295

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G   ++G   PI+G + MDMTM D+T  +  + GD + +FG     +D+A  +G
Sbjct: 296 ------GAFHVRGKRAPIIGNVCMDMTMIDVT-GIPCKEGDEVVVFGNGHSAEDLARGAG 348

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y+LL  I  R A+
Sbjct: 349 TISYELLTGISRRVAR 364


>gi|146328630|ref|YP_001209245.1| alanine racemase [Dichelobacter nodosus VCS1703A]
 gi|166967412|sp|A5EW54|ALR_DICNV RecName: Full=Alanine racemase
 gi|146232100|gb|ABQ13078.1| alanine racemase [Dichelobacter nodosus VCS1703A]
          Length = 357

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 172/369 (46%), Gaps = 34/369 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+  I+L AL++NW  +   S  A    V+K +AYG G   +A  L +A  + F V+ +E
Sbjct: 4   LKKIINLNALRHNWALIKQRSLPATPMVVLKADAYGHGMTTVAKTLDDA--RYFAVSCIE 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKII-----FDTNLIPVISSVPQLTFYSKLMSCGVS 121
           E + LR       + +L G++   E ++     FDT    ++ +  Q+ +  +      S
Sbjct: 62  EAIALRHLGIDTPVVLLEGVYRADELLLCEYYQFDT----LVHNFRQMQWLKEFNG---S 114

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G +RLG +  E  +    + +  +  Q   +I+H AC+D+        QL 
Sbjct: 115 VKAWLKVDSGMHRLGFTQDEIAEAFAQAHSLPVNIQWQGVITHFACSDEDDLTHAKKQLA 174

Query: 181 RFRTLI--SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTV 235
               L+  +H+K      A+S+ I   P  H+  TR GI LYG +  ++    ++ +Q V
Sbjct: 175 CMDRLVLPAHWK---RCYANSAAIFALPQAHYDYTRSGIMLYGLSPFMHGDGSAYGLQPV 231

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T    I+ +R     E   YG          +A  A+GY DG+  T++      S +V 
Sbjct: 232 MTVITEILAVRHLEKNETAGYGQGFTAPESGWLATIALGYGDGFARTIT------SGAVP 285

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           +     I G   P++G++ MDM M  +      E G  +++FG  +  ++VA A+GT  +
Sbjct: 286 V----LIAGQRYPLVGRVAMDMAMVWLGSDRYAE-GTIVELFGSHLPTEEVARAAGTIPH 340

Query: 356 DLLVRIGTR 364
            L   +  R
Sbjct: 341 TLTTMLMPR 349


>gi|54022846|ref|YP_117088.1| alanine racemase [Nocardia farcinica IFM 10152]
 gi|54014354|dbj|BAD55724.1| putative alanine racemase [Nocardia farcinica IFM 10152]
          Length = 381

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 169/373 (45%), Gaps = 25/373 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N   +   +G+A    VVK + Y  G  ++A     AG ++  VT+V E ++
Sbjct: 15  VDLDAIAHNVRVLREYAGDAAMMVVVKADGYNHGAVEVARTALAAGARELGVTTVAEALR 74

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVD 129
           LR     A +                 ++   +S   QL   +      G +    L+VD
Sbjct: 75  LREAGITAPVLCWLNTLSADYAAAVAADIEIGVSGTEQLRAVATAARATGRTATVTLKVD 134

Query: 130 TGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG NR G++  E    LD       +K  +L  + SHLA AD+P       Q +RF    
Sbjct: 135 TGLNRNGIAADELPTVLDLLGELVEEKTVRLRAMFSHLAHADEPKHPFLDEQRDRFTAAA 194

Query: 187 SHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEA 240
           +    +G+   L   A+S+  +  P+  F + RPGI++YG +         ++  +T +A
Sbjct: 195 AAATARGLRPELLHLANSAATVTRPDLAFDMVRPGIAVYGLSPVPELGDFGLRPAMTFQA 254

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++ L+++   GE VSYG Q    RD+ +A+   GYADG    LSG        V+LGG  
Sbjct: 255 QVALVKRVAEGEGVSYGHQWIAPRDTTVALIPAGYADGVFRPLSG-----RFDVWLGGT- 308

Query: 301 FIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIF--GPDIK-LDDVALASGTTNYD 356
                  P +G++ MD  + D+  D+  +  GD   +F  GP +    + A   GT +Y+
Sbjct: 309 -----RRPNVGRVCMDQFVVDLGDDAAGVAAGDTAVLFGGGPGVPGAQEWADLLGTIHYE 363

Query: 357 LLVRIGTRYAKFY 369
           ++     R  + Y
Sbjct: 364 VVCSPRGRAVRRY 376


>gi|325204612|gb|ADZ00066.1| alanine racemase [Neisseria meningitidis M01-240355]
          Length = 352

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 175/372 (47%), Gaps = 37/372 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +++
Sbjct: 4   LNVQIRLGNLRHNYRILKEMHG-GKLLAVVKADAYGHGAVRCAFALADL-ADGFAVATID 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       I +L G+    E + +   +L   + +  QL     L++     P  
Sbjct: 62  EGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWSAVGNQWQL---EALLARHWKKPVK 118

Query: 126 --LQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
             L++D+G +R G        F H+  S    L Q   +      SH +CAD+P S +  
Sbjct: 119 VWLKMDSGMHRTGF-------FPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTE 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +Q+E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+
Sbjct: 172 IQMEAFDLGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVM 230

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               RI   R       + YG     ++ + + + A GYADGYP         +SP    
Sbjct: 231 RLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA----PSNSPVA-- 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+
Sbjct: 285 -----VDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYE 338

Query: 357 LLVRIGTRYAKF 368
           L+  I  + AKF
Sbjct: 339 LMCNI--KRAKF 348


>gi|269977008|ref|ZP_06183982.1| alanine racemase [Mobiluncus mulieris 28-1]
 gi|269934839|gb|EEZ91399.1| alanine racemase [Mobiluncus mulieris 28-1]
          Length = 457

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 177/398 (44%), Gaps = 65/398 (16%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  +DL A + N   M   +  ++  A+VK +AYG G E+++ A   AG Q   V  V 
Sbjct: 12  VRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVAKVA 71

Query: 67  EGVKLRLY-------------TP-----QARIFV--LYGIHPGQEKIIFDTNLIPV---- 102
           E  +LR +             TP     ++R+F     G+   Q   IF     P     
Sbjct: 72  EAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTVQRPRIFAWLYTPSTDLK 131

Query: 103 ----------ISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
                     +S++ QL   S    + G+     L+VDTG  R G +L E  +    +  
Sbjct: 132 STIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKLARA 191

Query: 152 KK---LGQLSLIISHLACADDPSSHVNSV---QLERFRTL--ISHYKGIEASL---ASSS 200
           ++   L ++S I SH A +D+PS+   +    QL  F     I+   G++  L   A++ 
Sbjct: 192 RERSGLVEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVNGLQPKLRHMAATG 251

Query: 201 GILLGPNYHFQLTRPGISLYG--GTDKINKSHPM--QTVVTAEARIILIRKALAGELVSY 256
            IL  P  HF L R GIS YG     +I  +  +  + V+  E  +  ++K  AG  VSY
Sbjct: 252 AILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSAVSY 311

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           GG+      + +A+  IGYADG+   L G             K ++ G++ P++G+I MD
Sbjct: 312 GGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRIPMD 360

Query: 317 MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             + ++  ++    GD I    P +K  D+A+  G  N
Sbjct: 361 QIILNLGSAID-GAGDLIP---PPLKPGDLAVIFGDPN 394


>gi|168184689|ref|ZP_02619353.1| alanine racemase [Clostridium botulinum Bf]
 gi|237795085|ref|YP_002862637.1| alanine racemase [Clostridium botulinum Ba4 str. 657]
 gi|182672221|gb|EDT84182.1| alanine racemase [Clostridium botulinum Bf]
 gi|229263448|gb|ACQ54481.1| alanine racemase [Clostridium botulinum Ba4 str. 657]
          Length = 389

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 174/384 (45%), Gaps = 43/384 (11%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +++L  L  N  ++          AVVK N YG G   IA  L   G     V  + E +
Sbjct: 11  EVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRHSVACLSEAI 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPYAL 126
           +LR       I +L    P   + I + N+ PV+ S     QL+  + L +  V    A 
Sbjct: 71  ELREGGITCPINILGITPPTLFEDIINYNIEPVVFSYDYANQLSKAASLKNRIVKTHIA- 129

Query: 127 QVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            VDTG  RLG      SL+E +    N  N K+  L    SH + +D+     +  Q + 
Sbjct: 130 -VDTGMGRLGFDPTVESLEE-IKRIQNLSNIKIEGLC---SHFSSSDEKDKSYSEYQFKI 184

Query: 182 FRTLISHYKGIEASL-------ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-P 231
           F+      K IE ++       ++S+ I+  P+ +    R GI LYG   + ++NK +  
Sbjct: 185 FQNF--RKKLIEMNMKIPIHHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSREVNKENLH 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T +A I+ I+   +G+ V Y  + K  R S IA+  +GY DGY   LS       
Sbjct: 243 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD--D 345
                 GK  I G   PI+G I MD  M D+TD   ++VGD + I G D    ++ D  D
Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGRDDINNLRYDAED 351

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   G T+ +++  I  R  + Y
Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375


>gi|317127074|ref|YP_004093356.1| alanine racemase [Bacillus cellulosilyticus DSM 2522]
 gi|315472022|gb|ADU28625.1| alanine racemase [Bacillus cellulosilyticus DSM 2522]
          Length = 381

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 181/391 (46%), Gaps = 43/391 (10%)

Query: 3   SNEFLR---LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           +N F R   +++DL A++ N  ++ N L  +    A VK N YG     +A A   AG  
Sbjct: 4   TNHFYRNTWVEVDLNAIRENVKNLKNHLPSHVHIMAAVKANGYGHSSVPVAEAALQAGAT 63

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              V  ++E ++LR    +A I VL  + P    +  + ++   +     +   +K++  
Sbjct: 64  YLGVALLDEAIELRENGIKAPILVLGYVSPKYVNVAAEYDIRLTVFQSEWVEEAAKVLEA 123

Query: 119 GVSHPYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-----IISHLACADDPS 171
                 A  +++DTG  RLG+  +E      N+   KL + SL     + +H A AD+  
Sbjct: 124 DNKGKIACHVKIDTGMGRLGIRTKE----EGNALIVKLKKYSLFTIEGLFTHYATADELD 179

Query: 172 SHVNSVQLERFRTLISHYK---GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GT 223
           +    +Q +RF+ +IS ++   G E  +    +S+  L   + ++ L R GIS+YG   +
Sbjct: 180 TSYLELQQQRFKDMISWFEATWGAEVPMKHCGNSATALRFSSEYYNLVRYGISMYGLSPS 239

Query: 224 DKINK--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
           ++I +    P++   +  + I  I+KA  G+ +SYG   K   +  I    IGYADG+  
Sbjct: 240 EEIKELLPFPLKQAFSLYSEITHIKKAEKGDGISYGATYKSPGEEWIGTIPIGYADGWIR 299

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
             +             G+  + G  VPI+G+I MD  M  +     +++G  + I G   
Sbjct: 300 ANA------------TGEVLVNGERVPIVGRICMDQMMVALKQ--PVQIGTKVTIIGKQG 345

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKF 368
              I +D+VA    T NY++   IG+R  + 
Sbjct: 346 NSFITIDEVANRLNTINYEIPCTIGSRVPRI 376


>gi|225873754|ref|YP_002755213.1| alanine racemase [Acidobacterium capsulatum ATCC 51196]
 gi|225793021|gb|ACO33111.1| alanine racemase [Acidobacterium capsulatum ATCC 51196]
          Length = 428

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 181/430 (42%), Gaps = 75/430 (17%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           S+ F R    +I    L +N+  +  L S + R AAVVK NAYG G    AP L  AG +
Sbjct: 7   SSPFTRPVWAEISRARLLHNFSMLQQLASPDIRLAAVVKANAYGHGATLCAPWLAAAGAE 66

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              VTSVEEGV +R      RI V+ G+  G+ + + +  L PV+     L   ++    
Sbjct: 67  WLGVTSVEEGVAVRAVCATQRILVMSGLWQGEAEAVLEHCLTPVVWEPFHLDLLARAARQ 126

Query: 119 GVSHPYA----LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPS 171
               P A    L++DTG +R G +    L+       ++     LI   ++H    D+  
Sbjct: 127 AKLPPQALPVHLEIDTGMSRQGAAHGGLLEELLRRLREEPDSPLLIEGVLTHFHSPDELD 186

Query: 172 SHVNSVQLERFRTLI-----------SHYKGIEASLASSSGI----LLGPNYHFQLT-RP 215
           S V + Q+  F T +             + G   SL +  G+     L   +H QL  RP
Sbjct: 187 SPVTAAQIAAFATAVDTIAAAGLAPALLHAGNSTSLLTGHGLDALRALAARHHAQLMLRP 246

Query: 216 GISLYGGTDKIN-----------------------KSHPM----------QTVVTAEARI 242
           G++LYG T +                          SH +          Q V++ ++RI
Sbjct: 247 GLALYGYTPQAGGSVSEREEQSPRLKAEGYGLQPAHSHSLRGGASALEGFQPVLSLKSRI 306

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + +R   AG    Y G  +  R + +A+  IGYADG    LSG            G   +
Sbjct: 307 VSLRTIAAGATAGYNGTFRAARSTRLALLPIGYADGLSRLLSGR-----------GHVLV 355

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358
           +G+  PI G+I+MD T+ D++      +GD   + G      I  +D+A    T  +++L
Sbjct: 356 RGHRAPIAGRISMDQTILDVSGIPEAAIGDEAVLLGEQGNDRITAEDLAALCQTIPWEIL 415

Query: 359 VRIGTRYAKF 368
             I  R  + 
Sbjct: 416 TSIAARVPRV 425


>gi|332291955|ref|YP_004430564.1| alanine racemase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170041|gb|AEE19296.1| alanine racemase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 365

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 170/374 (45%), Gaps = 31/374 (8%)

Query: 8   RLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+IDL AL++N+  +   ++ + +  AVVK   YG     +A  L   GV  F V  V 
Sbjct: 5   RLEIDLAALRHNYSYLRKKVAPSVKMMAVVKAFGYGSDAGAVAQELEMLGVDYFAVAYVS 64

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124
           EG+ LR       I VL+   P     + +  L P I S+  +  ++         ++P 
Sbjct: 65  EGIALRDAGITTPILVLHP-QPDTFDELIERCLEPSIYSIRMMELFTAFAKGKGQENYPI 123

Query: 125 ALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLE 180
            L+ +TG NRLG     +   LD    + + K+  L    SHL  ++DP+    ++ Q+ 
Sbjct: 124 HLKFNTGLNRLGFLNTDVSWILDRLRENVSVKVASL---FSHLVASEDPAEEEFTLNQIL 180

Query: 181 RF----RTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
           +F    + L+     +    + ++SG++     HF   R GI LYG  +    +  ++ V
Sbjct: 181 QFTNISKELLQALDYVPFMHMTNTSGVINYHRAHFDCVRIGIGLYGYGNSKEDTKKLKPV 240

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
              ++ I  I     G+ + Y    K T + + A   IG+ADG   +L            
Sbjct: 241 ARLKSVISQIHHIKPGQSIGYNRAYKATEEIVTATLPIGHADGISRSLG----------- 289

Query: 296 LGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
             G G+  I G   PI+G + MDM M DIT  +S + GD +++FG     + +A    + 
Sbjct: 290 -NGVGYVMIAGQKAPIVGNVCMDMLMVDIT-GISCKEGDDVEVFGETTSAETLAGEMQSI 347

Query: 354 NYDLLVRIGTRYAK 367
           +Y+LL  IG R  +
Sbjct: 348 SYELLTAIGQRVKR 361


>gi|320451536|ref|YP_004203632.1| alanine racemase [Thermus scotoductus SA-01]
 gi|320151705|gb|ADW23083.1| alanine racemase [Thermus scotoductus SA-01]
          Length = 366

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 175/383 (45%), Gaps = 45/383 (11%)

Query: 2   HSNEFLR----LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           H+  +L+    +++DL AL+ NW  + A         V+K  AYG G   +A  L+  G 
Sbjct: 3   HATAYLKTRAWIEVDLKALEANWLLLKA-KARGEVIPVLKAEAYGHGALPLARFLFQKGA 61

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLM 116
           +   V +V EG  LR    +  I +L  +HP + + +   NL+P +S++        +  
Sbjct: 62  RWVAVATVSEGRTLREGGVEGEILLLGSLHPLEAEEVLRLNLLPTLSTLEAAQALAGRAR 121

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175
           + G++    L+VDTG NR+G   ++A D       + LG ++  + +HLA A +  + V 
Sbjct: 122 ALGLTPRAHLKVDTGMNRVGFPWEKAKDALLAV--EALGIRVEGVYTHLATASEDEAFVE 179

Query: 176 SVQLERF-RTLISHYKGIEASLASSSGILL--GPNYHFQLTRPGISLYGGTDKINKSHPM 232
            VQ  RF R   +  +G    L +S G+LL  G N      R G++LYG    +     +
Sbjct: 180 -VQRSRFQRVREALGEGYFYHLENSYGLLLHGGEN-----VRVGLALYG----LIPGFSL 229

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + ++   AR  L+++   G+ V YGG+        +    +GYADG P            
Sbjct: 230 KPILRLLARPTLVKQLGPGDRVGYGGEYVARGGEWLLTLPVGYADGLP------------ 277

Query: 293 SVFLGGKGFIKGY---MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI---KLDDV 346
               G   F+KG    + P+ G+I+MD T       L +E    +++  PD     L   
Sbjct: 278 ---RGAVRFVKGPEGGLYPVAGRISMDQTTVLSPGPLPLEA--VLEVLSPDFGPTGLCAW 332

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A GT  Y++ V +  R+ + Y
Sbjct: 333 AEARGTIPYEVAVHLSRRFPRVY 355


>gi|294102372|ref|YP_003554230.1| alanine racemase [Aminobacterium colombiense DSM 12261]
 gi|293617352|gb|ADE57506.1| alanine racemase [Aminobacterium colombiense DSM 12261]
          Length = 372

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 175/381 (45%), Gaps = 36/381 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R++++L  +++N+ ++    G   +  AVVK +AYG G  ++A +L  AG Q F V + +
Sbjct: 7   RMEVNLANIQSNFKTIRRHVGAGPQIMAVVKADAYGHGAVEVAKSLIEAGCQRFAVATPD 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-----CGVS 121
           E V LR       I VL G  P      +  + I   +++  L F +++MS      G +
Sbjct: 67  EAVVLREAGINDPILVL-GPSPYDAASAYVKHDIS--AALTDLVF-AQMMSREAVNQGKT 122

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLE 180
               L++DTG  R+G  L E +    +   K  G ++  + +H A AD+      + Q  
Sbjct: 123 ALLHLKIDTGMGRIGF-LPEQIPGIIDDILKLPGIKIEGLFTHFATADEKRLDYTNQQFA 181

Query: 181 RFRTLISHY---KGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           R+   + H+   KG+   L    +S+ +L  P  H    RPGI LYG         P++ 
Sbjct: 182 RYMK-VYHFLESKGVRVPLRHVCNSAAVLNSPEKHLDAVRPGIILYGMYPSSECIRPIEL 240

Query: 235 VVTAEAR--IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             T E +  I  +++  +   V YG +        IAV  IGY DG+   LS        
Sbjct: 241 KPTFEVKTAIAAVKEISSNSGVGYGLRYMSRGTEKIAVLPIGYGDGFSRCLS-------- 292

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
              +     + G  V ++G I MD TM D+TD   ++VGD + I G      I  +++A 
Sbjct: 293 ---MKVPVLVHGKRVSLVGNICMDQTMIDVTDIEDVKVGDEVVIVGRQGEEAITPEEIAP 349

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A GT NY++ +    R  + Y
Sbjct: 350 ARGTINYEIPIMFSKRVPRVY 370


>gi|182624961|ref|ZP_02952739.1| alanine racemase [Clostridium perfringens D str. JGS1721]
 gi|177909758|gb|EDT72176.1| alanine racemase [Clostridium perfringens D str. JGS1721]
          Length = 386

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 169/390 (43%), Gaps = 57/390 (14%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  + NN   +  L G     AVVK NAYG G   IA  L   G     V  + E  
Sbjct: 11  EINLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAIITEAD 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---YSKLMS-----CGVS 121
           +LR     A I +L     G   I F  NLI   + + Q  +   Y+K +S      G  
Sbjct: 71  ELRDAGITAPIMIL-----GYTPINFAENLIN--NEIEQTVYDVEYAKELSDFALKLGKK 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-------IISHLACADDPSSHV 174
               + +DTG  R+G    E         NK L   SL       + +H + +D+     
Sbjct: 124 AKIHIAIDTGMGRIGFLPNE------EGLNKVLEICSLPGVEVVGLFTHFSTSDEKDK-- 175

Query: 175 NSVQLERFRTLISHYKGIEAS-------LASSSGILLG-PNYHFQLTRPGISLYG--GTD 224
            +   E+F  L +  K +E +        AS+SG ++  P  +    R GI  YG   ++
Sbjct: 176 -TYTYEQFSKLTAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSE 234

Query: 225 KINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           ++ K +  ++  +T +  +  +++      VSYG   K  + S IA   IGYADGY   L
Sbjct: 235 EVKKENLKLKPALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLL 294

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--I 341
           SG             K  IKG    ++G++ MD  M D+T    +++GD + + G +  +
Sbjct: 295 SG-----------KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGL 343

Query: 342 KLD--DVALASGTTNYDLLVRIGTRYAKFY 369
           K D  D+A   GT NY++L  I  R  + Y
Sbjct: 344 KFDANDMAEIMGTINYEILCMISHRVPRIY 373


>gi|16802927|ref|NP_464412.1| hypothetical protein lmo0886 [Listeria monocytogenes EGD-e]
 gi|224503145|ref|ZP_03671452.1| hypothetical protein LmonFR_11593 [Listeria monocytogenes FSL
           R2-561]
 gi|17433700|sp|O85045|ALR_LISMO RecName: Full=Alanine racemase
 gi|16410289|emb|CAC98964.1| dal [Listeria monocytogenes EGD-e]
          Length = 368

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 167/377 (44%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  +    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    Q    ++ G    ++  +   N I +       +  LT  + L        
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLENLTLEATLR------- 123

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG        V +
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF------HVLV 297

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
           GG+      + PI+G++ MD T+  +      + G  + I G D    I  DD A    T
Sbjct: 298 GGE------LAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|261883963|ref|ZP_06008002.1| alanine racemase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 235

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 107/218 (49%), Gaps = 23/218 (10%)

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G   P  LQ DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ Q
Sbjct: 19  GKKLPALLQFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQ 78

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKI---N 227
           L +   L++    + A+LA+S G  LG  Y+F L RPGI+LYG         +DK+   N
Sbjct: 79  LAKMTALLARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHEN 138

Query: 228 K--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           K   H +  V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS 
Sbjct: 139 KKPKHSILPVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLVRSLSN 198

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
                      G + F     +PI+G++++D    D+T
Sbjct: 199 ----------KGRRPFSANTRLPIIGRVSIDSITLDVT 226


>gi|257452886|ref|ZP_05618185.1| alanine racemase, biosynthetic [Fusobacterium sp. 3_1_5R]
 gi|257466749|ref|ZP_05631060.1| alanine racemase, biosynthetic [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917898|ref|ZP_07914138.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059428|ref|ZP_07923913.1| alanine racemase [Fusobacterium sp. 3_1_5R]
 gi|313685104|gb|EFS21939.1| alanine racemase [Fusobacterium sp. 3_1_5R]
 gi|313691773|gb|EFS28608.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 354

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 168/379 (44%), Gaps = 48/379 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   L++N   +   +       V+K NAYGLG   +A  L   G+  F V S+EE 
Sbjct: 5   VEIDTENLRHNIREIQKRAEGFGVWGVIKANAYGLGVLPVAKILAEEGIHYFAVASLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQ----EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            ++R       I +L  +   +    E + F  N    +S   +L + +K       H  
Sbjct: 65  KEVRNANITGEILILGSLFHDEILEAESLDFHIN----VSCREELEWIAKNAPKTKIH-- 118

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSV---QLE 180
            L++DTG  RLG S QE ++     F KKL   ++ + SH + AD  S         Q+E
Sbjct: 119 -LKIDTGMTRLGFSYQEGMEVIE--FAKKLSLNITGVFSHFSDADGNSQEAKEYTQKQIE 175

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQ----LTRPGISLYGGTDKINKSHPM---Q 233
           RF    +  + I      +SG L+   Y  Q    + R GI LYG    I  S P+   +
Sbjct: 176 RFLPYATR-EDIPYRHIFNSGALI--QYTDQKIGNMVRAGICLYG----ILGSTPIPSFK 228

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            VVT + +++  +       VSYG   KL +        IGYADG    L+         
Sbjct: 229 NVVTLKTKVLFKKTVTEETYVSYGRLCKLEKGETYVTLPIGYADGVKKYLAN-------- 280

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPD-IKLDDVALAS 350
              GGK  I G   PI+G I MDM M  I ++L   IE+G  + +F  D I+ +++   S
Sbjct: 281 ---GGKVEILGEACPIIGAICMDMMMVKIPENLVNKIEIGTEVSVFNNDIIRRNNI---S 334

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  +D+   +G R  + Y
Sbjct: 335 ETCTWDMFTGLGRRVQRIY 353


>gi|149196848|ref|ZP_01873901.1| alanine racemase [Lentisphaera araneosa HTCC2155]
 gi|149139958|gb|EDM28358.1| alanine racemase [Lentisphaera araneosa HTCC2155]
          Length = 360

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 173/373 (46%), Gaps = 35/373 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL ALK N+H +  LS  ++   V+K NAYGLG ++IA  L  +G     V  + E 
Sbjct: 9   LSIDLRALKENFHKLEKLSSPSQVMPVLKANAYGLGAKEIAAELKESGATIIAVADLNEA 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
           + LR       I +L  I P +  +    N I  I S+      S     G    +  L 
Sbjct: 69  LDLRDLD--LDILILGDIIPEEIPLAIRNNFILPIGSLESAQLIS--AHAGERRVFCHLV 124

Query: 128 VDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G  RLG+   +AL +F   +  +KL     + +H   A       +  Q+E F+  +
Sbjct: 125 IDSGMGRLGIPAAQALEEFAEIAKLEKL-HFDGVYTHFPVAYS-DREFSLQQIEAFKDFL 182

Query: 187 SH----YKGIEASLASSSGILLGP---NYHFQLTRPGISLYGGTD-KINKSHPMQTVVTA 238
           +     +K I   +A+S GI   P      F   R G++LYG  D +  +   ++ ++T 
Sbjct: 183 NQCPHTFKRIH--IANSDGIHNIPEACQAPFNFVRTGLNLYGCFDLEGAQRVQLEPILTL 240

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +R++ +R+  AG  + YG +  L + +L+   A+GYADG+P                  
Sbjct: 241 ASRLVRVRELNAGMSIGYGREWLLEKTTLVGTVALGYADGFPFNT--------------- 285

Query: 299 KGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           K ++  +G+  P++G+I+MD    D++   + + GD +   G  I +   A   GT  Y+
Sbjct: 286 KAYVLYQGHKCPVIGRISMDYITIDLSQCPNAKSGDAVLCLGDAIPVAKWAKWKGTITYE 345

Query: 357 LLVRIGTRYAKFY 369
           ++  +G R  + Y
Sbjct: 346 IICSLGQRIKRIY 358


>gi|73542215|ref|YP_296735.1| alanine racemase region [Ralstonia eutropha JMP134]
 gi|72119628|gb|AAZ61891.1| Alanine racemase region [Ralstonia eutropha JMP134]
          Length = 366

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 163/346 (47%), Gaps = 27/346 (7%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L+  ++  AVVK NAYG G  ++ PAL +A    F +  + E V+LR       I +L G
Sbjct: 24  LAPASKVWAVVKANAYGHGIARVYPALASA--DGFALLDLHEAVQLRELGWTGPILLLEG 81

Query: 86  IHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA----LQVDTGFNRLGLSLQ 140
                +  ++    L   +    QL         G   P +    L++++G NRLG S +
Sbjct: 82  FFDESDIALLASLRLTTAVHGEEQLRMLEIASRDGRLPPRSIDICLKLNSGMNRLGFSPE 141

Query: 141 EALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVN-SVQLERFRTLISHYKGIEASLA 197
                ++ +  ++L  ++ +  ++H++   D  +    + Q   FR +     G + S+A
Sbjct: 142 -----SYGAAWRRLRDVAAVKSVTHMSHFSDADTQKGVAEQAAIFRAVTRGLPG-QISIA 195

Query: 198 SSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRKALAGEL 253
           +S+  +   + H    R GI LYG    G         +Q   T  +RI+ ++  L G+ 
Sbjct: 196 NSATTMRHADCHADWVRAGIMLYGAAPSGCAADLSGTGLQAAQTLTSRILGVQDLLPGQS 255

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           V YG     TR   I + A GYADGYP T S   ++H   V +G +      +   +G++
Sbjct: 256 VGYGSHYVATRRQRIGIVACGYADGYPRTSSS-HADHFAPVRVGDR------LTRTVGRV 308

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           +MDM   D+++     VG  ++++G  + +DDVA A+GT  Y+L+ 
Sbjct: 309 SMDMLAVDLSECPEANVGSPVELWGRHVPIDDVAAAAGTIGYELMC 354


>gi|239623709|ref|ZP_04666740.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521740|gb|EEQ61606.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 396

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 173/376 (46%), Gaps = 30/376 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A+  N  +M A L  +     VVK + YG G   +A  + +  V  + V SV+EG+
Sbjct: 11  IHLDAVAANMEAMKANLPASTSMIGVVKTDGYGHGAVPVARTI-DPYVDGYAVASVDEGI 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQV 128
            LR +  +  I VL   H  + + +   ++ P +    +    S + +  G      L V
Sbjct: 70  ILRRHGIRKMILVLGVTHESRFEDLVQYDIRPAMFRYGEAQKLSAVAAAMGKKANIHLAV 129

Query: 129 DTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG NR+G+   QE+ D  +     +  ++  + +H A AD+       +Q  ++   + 
Sbjct: 130 DTGMNRIGMKPDQESADMVYRINMLEGIRIEGMFTHFARADEADKTTYGLQFGKYNDFVE 189

Query: 188 HY--KGIEASL---ASSSGIL--LGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVVT 237
               +GI   +   ++S+GI+  LG N    + R GIS+YG   +D++ K    +   + 
Sbjct: 190 MLGSRGITIPIRHCSNSAGIVESLGAN-GLDMVRAGISIYGLYPSDEVGKDAVKLTPAME 248

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++ I  I+    G+ VSYGG     R   +A   +GY DGYP +LSG            
Sbjct: 249 LKSFITYIKTIEPGDAVSYGGTFVADRQMRVATIPVGYGDGYPRSLSGR----------- 297

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G    ILG+I MD  M D+T        D + + G D    I ++++A A G  
Sbjct: 298 GSVLIRGQRARILGRICMDQFMVDVTGIAGAAEDDEVTLIGRDGDGFIAVEELAGAGGGF 357

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y+++  IG R  + Y
Sbjct: 358 HYEIICGIGKRVPRVY 373


>gi|152997631|ref|YP_001342466.1| alanine racemase [Marinomonas sp. MWYL1]
 gi|189027389|sp|A6W1F2|ALR_MARMS RecName: Full=Alanine racemase
 gi|150838555|gb|ABR72531.1| alanine racemase [Marinomonas sp. MWYL1]
          Length = 365

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 176/367 (47%), Gaps = 27/367 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L   +DL A+  N+     L    +  AVVK NAYG G  +++  L +  V  F V ++E
Sbjct: 5   LTATVDLEAILQNYRYAKKLQPTCKAFAVVKSNAYGHGAVEVSRYL-DKEVDAFAVAAIE 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E + LR     + I +L G+  G+E  + + +     + +  QL       S        
Sbjct: 64  EAIALREAGIVSPILLLEGVFEGEEWALCEKHGFWSALENAQQLDELQA--SHAKIEKVF 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLERFR 183
           L++D+G +RLG+  + A  F   S  K  GQ+   ++++H +CADD S      QL  F 
Sbjct: 122 LKLDSGMHRLGVDKETAPVFV--SALKDSGQVGEVVLMTHFSCADDLSDLTTMQQLAYFE 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEA 240
                   IEAS+A+S+ I+          RPGI LYG +   +   +S  ++  +T  +
Sbjct: 180 QARQSIGEIEASVANSATIMKWSVPEGGWIRPGIMLYGISPFAEVSGRSIGLRPAMTLSS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I  RK   G+ V YG       D ++A  A+GY DGYP         H+ +   G   
Sbjct: 240 KVISTRKLKQGDKVGYGLGYVAAEDHVLATVAVGYGDGYP--------RHAVN---GTPL 288

Query: 301 FIKGYMVPILGKITMDM---TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
            I G    + G+++MDM    M D+ D  ++  G  + ++G D+ +++VA  +GT  Y+L
Sbjct: 289 KIDGKPASLAGRVSMDMITVRMQDLADEPAM--GQDVVLWGGDVPVEEVADYAGTIGYEL 346

Query: 358 LVRIGTR 364
           + R+ +R
Sbjct: 347 VTRMTSR 353


>gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
 gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
          Length = 870

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 171/379 (45%), Gaps = 35/379 (9%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL+A+ NN   +  + G   +    +K +AYG G  K+A  + + G     V ++ E
Sbjct: 505 VEIDLSAIGNNVRKIREIVGPGVQILISLKADAYGHGALKVARTVLHNGASMLGVATLSE 564

Query: 68  GVKLRLYTPQARIFVLYGIHP---GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
              LR     A I + +G  P    +E +  D   I + SS           +   S   
Sbjct: 565 AAALREAGIDAPILI-FGYVPYWQMREAVRLDVT-ITLYSSESAQALARAAQALRQSVRV 622

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-----IISHLACADDPSSHVNSVQL 179
            ++VDTG  RLG+  ++A +    +  ++ G+L       I +H A AD         QL
Sbjct: 623 HIKVDTGMGRLGIRSEQAEEIL--ALVREAGELEGLEVEGIYTHFASADADDKTYAHTQL 680

Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
            RF+ ++   +  E        A+S+  L  P  HF + RPGI++YG   ++++      
Sbjct: 681 ARFQHILELLERAEICPPVVHAANSAATLSLPEAHFNMVRPGIAIYGLDPSEEVRVPDGF 740

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ + +I  ++   AGE +SYG      R + IAV  +GYADG+       +S    
Sbjct: 741 KAALSFKTQIAQVKMIPAGECISYGCTYVTERPTRIAVLPVGYADGFRRAPRNWESV--- 797

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G   P++G+I MD  M D++    + +GD + + G     ++  +++A 
Sbjct: 798 --------LVHGQEAPLIGRICMDQCMIDVSAIPQVRMGDEVVLIGRQGKAELTAEEIAR 849

Query: 349 ASGTTNYDLLVRIGTRYAK 367
             GT NY+++  I  R  +
Sbjct: 850 RLGTINYEVVAEILARVPR 868


>gi|15594505|ref|NP_212294.1| alanine racemase (alr) [Borrelia burgdorferi B31]
 gi|218249176|ref|YP_002374687.1| alanine racemase [Borrelia burgdorferi ZS7]
 gi|223889148|ref|ZP_03623737.1| alanine racemase [Borrelia burgdorferi 64b]
 gi|225549335|ref|ZP_03770308.1| alanine racemase [Borrelia burgdorferi 94a]
 gi|226321930|ref|ZP_03797455.1| alanine racemase [Borrelia burgdorferi Bol26]
 gi|6647402|sp|O51182|ALR_BORBU RecName: Full=Alanine racemase
 gi|226711027|sp|B7J192|ALR_BORBZ RecName: Full=Alanine racemase
 gi|2688050|gb|AAC66549.1| alanine racemase (alr) [Borrelia burgdorferi B31]
 gi|146743642|gb|ABQ43052.1| alanine racemase [Borrelia burgdorferi JD1]
 gi|146743644|gb|ABQ43053.1| alanine racemase [Borrelia burgdorferi]
 gi|218164364|gb|ACK74425.1| alanine racemase [Borrelia burgdorferi ZS7]
 gi|223885397|gb|EEF56498.1| alanine racemase [Borrelia burgdorferi 64b]
 gi|225370193|gb|EEG99633.1| alanine racemase [Borrelia burgdorferi 94a]
 gi|226232520|gb|EEH31274.1| alanine racemase [Borrelia burgdorferi Bol26]
 gi|312148518|gb|ADQ31177.1| alanine racemase [Borrelia burgdorferi JD1]
          Length = 372

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 157/352 (44%), Gaps = 28/352 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 32  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 91

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 92  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 149

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 150 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 207

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE +S
Sbjct: 208 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGEKIS 267

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 268 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 316

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG +Y K
Sbjct: 317 NLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG-KYEK 367


>gi|20140854|sp|Q9KHL7|VANTG_ENTFA RecName: Full=Amino-acid racemase; AltName: Full=Vancomycin G-type
           resistance protein VanT
 gi|7960293|gb|AAF71283.1|AF253562_7 racemase [Enterococcus faecalis]
          Length = 711

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 175/378 (46%), Gaps = 42/378 (11%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L  L++N +++  A+S      AVVK  AYG G  ++       GV    V +++E
Sbjct: 347 LEINLNNLEHNVNTLQKAMSPKCELMAVVKAEAYGHGMYEVTTYFEPIGVFYLAVATIDE 406

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G++LR Y   + I +L    P + K +    L   +     L   +K    G      ++
Sbjct: 407 GIRLRKYGIFSEILILGYTSPSRAKELCKFELTQTLIDYRYLLLLNKQ---GYDIKAHIK 463

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLG S ++  D    +F  K  +++ I +HL  AD  S     V     + + S
Sbjct: 464 IDTGMHRLGFSTEDK-DKILAAFFLKHIKVAGIFTHLCAAD--SLEEKEVAFTN-KPIGS 519

Query: 188 HYKGIEASLASSSGILLGPNYHFQ-------------LTRPGISLYGGTDKINKSHPMQT 234
            YK ++   +S   I   P  + Q             + + G++LYG     N    ++T
Sbjct: 520 FYKVLDWPKSSGLNI---PKVNIQTSYGLWNIQSWNVIYQSGVALYGVLRSTNDKTKLET 576

Query: 235 VVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            + A    +A+++LIRK   G  V Y      TRDSLIA+  IGYADG+P  LS  +S  
Sbjct: 577 DLRACSFLKAKVVLIRKIKQGGSVGYSRAFTATRDSLIAILPIGYADGFPRNLSCGNS-- 634

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
              V +GG+        PI+GKI MD    D+TD  +++ G    + G D    I    V
Sbjct: 635 --YVLIGGR------QAPIVGKICMDQLAVDVTDIPNVKTGSIATLIGKDGKEEITAPMV 686

Query: 347 ALASGTTNYDLLVRIGTR 364
           A ++ +   +LL R+  R
Sbjct: 687 AESAESITNELLSRMEHR 704


>gi|238026883|ref|YP_002911114.1| alanine racemase [Burkholderia glumae BGR1]
 gi|237876077|gb|ACR28410.1| Alanine racemase [Burkholderia glumae BGR1]
          Length = 356

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
            ++  AVVK NAYG G  +  P L   G   F +  V+E V+LR       I +L G   
Sbjct: 27  RSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLDVDEAVRLRELGWAGPILLLEGFFR 84

Query: 89  GQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQVDTGFNRLGLSLQE-ALD 144
             +  + D  +L   + +  Q+     L +  +S P    L++++G NRLG S+ +    
Sbjct: 85  STDVDVIDRYSLTTALHNDDQMRM---LETARLSKPVNILLKMNSGMNRLGYSVDKYRAA 141

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL 204
           +        +GQ++L+ +H A AD       + Q+  F        G    LA+S+ ++ 
Sbjct: 142 WERARTCPGIGQITLM-THFADAD--GERGVAAQMAAFERGAEGIAGAR-CLANSAAVMW 197

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIRKALAGELVSYGGQK 260
               H    RPGI LYG +     +      +Q  +T  + +I ++   AG+ V YGG  
Sbjct: 198 HAQTHHDWVRPGILLYGASPSGRAADIADAGLQPAMTLASELIAVQSIKAGDAVGYGGAF 257

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
             T+   I V A GYADGYP     +  E +P         + G    I+G+++MDM   
Sbjct: 258 VATQAMRIGVVACGYADGYPR----VAPEGTPV-------LVDGVRTRIVGRVSMDMITV 306

Query: 321 DITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           D+T      +G  ++++G  + +DDVA    T  Y+L+  +  R
Sbjct: 307 DLTPVPQAGIGARVELWGRALPVDDVAAHCATVGYELMCAVAQR 350


>gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 829

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 185/378 (48%), Gaps = 28/378 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL +DL A+++N     AL G      AV+K  AYG    ++A AL ++G+    V++ +
Sbjct: 461 RLLVDLDAIRDNITRFRALCGPEVAILAVLKAWAYGTELPRLAAALQDSGIDWIGVSAAD 520

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYA 125
           EG  +R       + V+  + P +        + P+I S+P        L S G      
Sbjct: 521 EGAVIRRAGVHRPVLVML-MDPDEVDKAVRWRVTPLIYSLPFAQALVRTLQSMGAHLEVH 579

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS-VQLERFRT 184
           L+++TG  RLG++ +EAL       +  +  ++ +++HLA ADDP++   +  QLERF  
Sbjct: 580 LEIETGMGRLGVAPEEALAAARLLRDSGVVTVTGVMTHLAGADDPAADDETRAQLERFDA 639

Query: 185 LISH-YKGIEASL----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237
           +++  ++ +   L    A++SG +  P   + + R G+ L+G   +  + ++  ++  V 
Sbjct: 640 VMARLHQELGTPLLVHAAATSGAVRFPQSRYGMVRLGLGLFGLHPSPAVAEAIELELAVA 699

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             +R++ +R+   G+ + Y G   ++ +   I + A GY DG P   S            
Sbjct: 700 FISRLVQVREYGRGQRIGYNGTYVVSAERQRIGIVAAGYNDGVPWRFSNR---------- 749

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
            G+  I+G  + +LG+++MD    D+       VGD + IFG      ++ +  AL +GT
Sbjct: 750 -GEVMIQGRRLAVLGRVSMDSMAVDLDPLPEATVGDEVLIFGAYEGQVLRPEQAALQAGT 808

Query: 353 TNYDLLVRI-GTRYAKFY 369
             YDLLV++ G R  + +
Sbjct: 809 IPYDLLVQVDGRRVQRIF 826


>gi|302874151|ref|YP_003842784.1| alanine racemase [Clostridium cellulovorans 743B]
 gi|307689590|ref|ZP_07632036.1| alanine racemase [Clostridium cellulovorans 743B]
 gi|302577008|gb|ADL51020.1| alanine racemase [Clostridium cellulovorans 743B]
          Length = 386

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 179/385 (46%), Gaps = 47/385 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L +N   +  ++      AVVK + YG G    +  L   G     V  + E V
Sbjct: 11  EINLDNLAHNMREIKKITRAKDIIAVVKADGYGHGAIDTSKILLENGATALAVAVISEAV 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-YSKLMS---CGVSHPYA 125
           +LR    +  I +L     G    I+  +L+    S    T+ Y+K +S           
Sbjct: 71  ELRRNGIKCPIMIL-----GYTPTIYGDSLVKYDISPTVFTYEYAKELSDIAKAEDKIIK 125

Query: 126 LQV--DTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNS 176
           +QV  DTG  R+G      S++E    +      KL  +S+  I SH + +D+ +     
Sbjct: 126 IQVALDTGMGRIGFMPDKNSVEEVYKIS------KLPNISIEGIFSHFSTSDEANKKFTL 179

Query: 177 VQLERFRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            QL+++   I +   +GI   +   A+S+ I+   + HF+  R GI +YG   + ++N S
Sbjct: 180 EQLKKYEDFIHNLEERGINIKIRHIANSAAIIDLKDTHFEAVRSGIIMYGYYPSKEVNVS 239

Query: 230 HPM-QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             + + V+T +  II ++K      +SYG   K  ++ +IA   +GYADGY   LS    
Sbjct: 240 KLLLKPVMTLKTNIIHVKKLPKDYSISYGRTYKTQKEEIIATLPVGYADGYTRQLSD--- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DIKL--D 344
                     +  I G + P++G+I MD  M ++TD   +++GD + + G   ++K+  D
Sbjct: 297 --------KAQVIINGKLAPVVGRICMDQCMVNVTDIDDVKIGDEVILMGQCDNVKMDAD 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           D+A    T NY+++  IG R  + Y
Sbjct: 349 DIAGLLETINYEVVCMIGKRVPRVY 373


>gi|294630935|ref|ZP_06709495.1| alanine racemase [Streptomyces sp. e14]
 gi|292834268|gb|EFF92617.1| alanine racemase [Streptomyces sp. e14]
          Length = 391

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 167/375 (44%), Gaps = 34/375 (9%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR--- 72
           ++ N  ++   +  A   AVVK +AYG G  + A A   AG       + EE + LR   
Sbjct: 1   MRANVRALRERTPGAALMAVVKSDAYGHGAVRCARAAVAAGATWLGTATPEEALALRAAG 60

Query: 73  LYTPQARIFVLYGIH--PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +   QAR+         P +E +  D + + V          +   + G      L+ DT
Sbjct: 61  IAPEQARVLCWLWTPGGPWREAVEADVD-VSVSGLWALAEVRAAARAAGRPARVQLKADT 119

Query: 131 GFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           G  R G    +  +    +   +   L +++ + SH ACAD+P     + QL+RFR + +
Sbjct: 120 GLGRNGCQPADWPELVAEALRAEAEGLIRITGLWSHFACADEPGHPSIAAQLDRFREMTA 179

Query: 188 HY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTA 238
           H   +G+      +A+S   L  P  HF L R GI+LYG +       P    ++ V+T 
Sbjct: 180 HAETRGVRPEVRHIANSPAALTIPESHFDLVRTGIALYGISPAPELGVPADFGLRPVMTL 239

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A + L++    G  +SYG       ++ + +  +GYADG P   SG     +  V +GG
Sbjct: 240 SASLALVKHVPGGHGISYGHHYVTPGETTLGLVPVGYADGIPRHASG-----TGPVLVGG 294

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354
           K         + G+I MD  + D+      EVG    +FGP    +   +D A A+GT  
Sbjct: 295 KWRT------VAGRIAMDQFVVDLGGD-EPEVGARAVLFGPGDGGEPTAEDWAQAAGTIA 347

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++ RIGTR  + Y
Sbjct: 348 YEIVTRIGTRVPRVY 362


>gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301]
          Length = 789

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 169/381 (44%), Gaps = 42/381 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL A+ +N +   + L    R  A+VK  +YG G  ++A  L + GV    V   +E
Sbjct: 428 LEVDLDAMIHNLNYFRSKLDFRTRLVAMVKAGSYGAGDFEVAQMLQHQGVDYLAVAFADE 487

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR       + VL       +++I +  L P I S   L  ++  +S      +P  
Sbjct: 488 GVLLRERGITMPVVVLNADADSFDQMIAN-RLEPEIYSFRSLADFADAVSHAGETRYPVH 546

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +RLG    E              +++ + SHL CAD P     +      R  
Sbjct: 547 IKLDTGMHRLGFMEGEIGRLCEVLPTLPAVKVASVFSHLNCADMPGEDAYT------REQ 600

Query: 186 ISHYKGIEASLASS------------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           I+ Y  + A++A+S            + I   P   F + R G+ LYG     N    ++
Sbjct: 601 IARYDRMSAAVAASLPYSVIRHTANSAAIERFPEARFDMCRLGLGLYGFGWVHNAG--LR 658

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V   + RI+ I++  AG+ V YG   KL R ++ A   IGYAD       GLD      
Sbjct: 659 PVSALKTRIVQIKRLEAGDAVGYGRAGKLLRPTVTATVPIGYAD-------GLDRH---- 707

Query: 294 VFLGGKGF---IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLDDVAL 348
             LG   +   + G   PI+G++ MD  M DITD   +  GD + +F   P   L+ +A 
Sbjct: 708 --LGCGRWSMRVAGRPAPIVGRVCMDSCMIDITDIPGVGEGDEVTVFSAEPGNDLETMAR 765

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+++  + +R  + Y
Sbjct: 766 VLDTIPYEIMTSVSSRVKRIY 786


>gi|224826258|ref|ZP_03699360.1| alanine racemase [Lutiella nitroferrum 2002]
 gi|224601359|gb|EEG07540.1| alanine racemase [Lutiella nitroferrum 2002]
          Length = 379

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 166/362 (45%), Gaps = 24/362 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I L AL+ N+     L+G AR  AV+K +AYG G  ++A AL +A    F +   ++ 
Sbjct: 7   VEIHLPALRRNYALAKTLAGAARVWAVLKSDAYGHGLTRVALALPDA--DGFALIQPDDA 64

Query: 69  VKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR     A+I +L G +  G   I     L  V+ S  QL +   L+         ++
Sbjct: 65  VTLRHAGIGAQILLLEGALEEGDVDIAAQHRLDLVLRSEHQLQW---LLQKARPVTVWVK 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           V+TG NR G + + AL            +++ +++H ACAD   + ++     RF  ++ 
Sbjct: 122 VNTGMNRFGFTPERALAVVRQLQATPFCRVAGLMTHFACADQLGTPLDE-PWRRFLQVV- 179

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT--VVTAEARII 243
              G+  + A+S+ +L     H  + R G  LY         +  PM    V+   ARI+
Sbjct: 180 EATGLPYTAANSAALLREARTHGAVARVGGLLYNNNPFYPDTRLWPMAAAPVMRFAARIV 239

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +    AG+ + YG       D  I +   GY DGYP          +PS   G    + 
Sbjct: 240 HVSTLQAGDSIGYGAAFTARHDMRIGIVGAGYGDGYP--------RSAPS---GTPVLVN 288

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLLVRIG 362
           G    ++G++ M++   D++    ++VGD + ++G P +  D++A   GT + +L   + 
Sbjct: 289 GRRAALVGRVAMNVLAIDLSALPEVQVGDEVTLWGAPGLSCDEIAWRCGTISEELQCALT 348

Query: 363 TR 364
           +R
Sbjct: 349 SR 350


>gi|170760162|ref|YP_001787063.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407151|gb|ACA55562.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
          Length = 389

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 172/389 (44%), Gaps = 53/389 (13%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +++L  L  N  ++          AVVK N YG G   IA  L   G     V  + E  
Sbjct: 11  EVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLSVACLSEAT 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPYAL 126
           +LR       I +L    P   + I D N+ PV+ S     QL+  + L +  V    A 
Sbjct: 71  ELRKGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDYANQLSKAASLKNRIVKTHIA- 129

Query: 127 QVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
            VDTG  RLG      SL+E          K++  LS I      SH + +D+     + 
Sbjct: 130 -VDTGMGRLGFDPTVESLEEI---------KRIQDLSNIKIEGLCSHFSSSDEKDKSYSE 179

Query: 177 VQLERFRTLISHYKGIEASL-------ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
            Q + F+      K IE ++       ++S+ I+  P+ +    R GI LYG   + ++N
Sbjct: 180 YQFKIFQNF--RKKLIEMNMRIPIHHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVN 237

Query: 228 KSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           K +  ++ V+T +A I+ I+   +G  V Y  + K  R S IA+  +GY DGY   LS  
Sbjct: 238 KENLHIKQVMTLKANIVHIKTIDSGRYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR 297

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                      GK  I G   PI+G I MD  M D+TD   ++VGD + I G D    ++
Sbjct: 298 -----------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLR 346

Query: 343 LD--DVALASGTTNYDLLVRIGTRYAKFY 369
            D  D+A   G T+ +++  I  R  + Y
Sbjct: 347 YDAEDIASKVGMTSGEIMSIISKRVPRVY 375


>gi|297625319|ref|YP_003687082.1| alanine racemase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921084|emb|CBL55625.1| Alanine racemase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 382

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 171/384 (44%), Gaps = 37/384 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           L+IDL AL++N  ++  L G+ +    VK + YG G   IA       + D+  V +V E
Sbjct: 7   LEIDLDALRHNARAIKQLVGDRKVLVAVKADGYGHGAVPIARLFQREHLADWLGVATVSE 66

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI---SSVPQLTFYSKLMSCGVSHPY 124
            + LR       I  L    P +     D ++   +    S  +    +K++   V+   
Sbjct: 67  AMALREGGVTLPILKLSHAFPEELPTAIDADIALTVVDEQSADEAAEAAKVVGKPVN--V 124

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-LERFR 183
            L +DTG  R+G   + A+    +     L  L  I +H+  +D    +  +V+ L RF 
Sbjct: 125 HLALDTGMRRIGAEPEHAVALARHIDEDAL-NLQGIFTHMPVSDTTQGYDFTVEELARFA 183

Query: 184 TLISHYKGIEAS----------LASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHP 231
             +   +   A+           A+S+G+L        + RPGI++YG     +  ++  
Sbjct: 184 KAVDDVQADRATRGLPAVPLVHAAASAGVLGHDLSGLTMVRPGIAIYGAYPDAQTPRTAA 243

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ VVT  +++  I++  AGE VSYG       D  IA   +GYADG+    + L+S   
Sbjct: 244 LRPVVTMRSKVSFIKRIRAGETVSYGRTWTAPTDRWIATVPVGYADGF----NRLNSNR- 298

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDI--TDSLSIEVGDYIQIFGPD----IKLDD 345
                 G+  I G   P+ G++ MD TM D+   D   +  GD + I G      I  D+
Sbjct: 299 ------GRMLINGRSFPVAGRVCMDQTMLDLGEADDHGVHRGDDVIIIGASGDEYISTDE 352

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  +GT +Y++   I  R ++ Y
Sbjct: 353 LAELAGTISYEVTAVIPPRVSRQY 376


>gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
 gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
          Length = 822

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 171/375 (45%), Gaps = 32/375 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + +    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEVNLNAVVDNLNYYRSFMKPETKMVCMVKASAYGAGAVEIAKTLQDHQVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQL-TFYSKLMSCGVSH-P 123
           GV LR     A I ++   +P       +F+ +L P + S   L     +    GV+H P
Sbjct: 523 GVDLRKAGITANIMIM---NPEMSSFPTLFEYDLEPEVYSFRLLEALTHEAEKEGVTHFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACAD-DPSSHVNSVQLER 181
             +++DTG +RLG   ++ +        ++   +   + SH   +D D     ++ Q E 
Sbjct: 580 IHVKLDTGMHRLGFDPEKDMPLLVERLKRQSAVIPRSVFSHFVGSDSDDFDAFSARQYEL 639

Query: 182 F-----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F     +   ++   I   + +S+GI   P  H ++ R G+ LYG   + N+   +  V 
Sbjct: 640 FLKGSAQLQQAYSHKILRHICNSAGIEHFPERHLEMVRLGLGLYGINSRNNEI--LHNVS 697

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I +    + V Y  + +LTRDS IA   IGYADG    L             
Sbjct: 698 TLKTTILQIHEVPKEDTVGYSRKGRLTRDSRIAALPIGYADGLDRKLG------------ 745

Query: 297 GGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
            G+ +  + G   P +G I MD+ M D+TD +    GD   IFG D+ +  ++ A GT  
Sbjct: 746 CGRAYCLVNGQRAPYVGNICMDVCMIDVTD-IDCREGDTAIIFGDDLPVTVLSDAVGTIP 804

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  +  R  + Y
Sbjct: 805 YEILTGVSARVKRVY 819


>gi|56459152|ref|YP_154433.1| alanine racemase [Idiomarina loihiensis L2TR]
 gi|56178162|gb|AAV80884.1| Alanine racemase [Idiomarina loihiensis L2TR]
          Length = 363

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 172/378 (45%), Gaps = 40/378 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +I  +A+++N   +       +   VVK + YG G      AL    V       +EE
Sbjct: 7   RAEISSSAIQHNAKWVRRKMAGGKLLGVVKADGYGHGVVPAVNALEEL-VDGMAAGFMEE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--Y 124
            + +R    +  + +L G     E  +  +  L PV+    QL +  +     ++ P   
Sbjct: 66  ALAVRETGYKGPLVILEGCFSATELNLCCEHQLSPVVHCEQQLEYIEQ---AKLTSPLWV 122

Query: 125 ALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+VDTG +RLG S ++A         +K +  ++L+ SHLA AD     +N+ Q ++F 
Sbjct: 123 WLKVDTGMHRLGWSEEQAPQALKRLRASKNVAGVTLM-SHLANAD-AEHRLNARQKQQFC 180

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQL-----TRPGISLYGGTDKINKSHPMQTVVTA 238
            L    K  +A    +S  LL P+  + L      R G+ LYG    +N S    T V A
Sbjct: 181 QLSETLKDYQARSFHNSAGLLNPDTQWSLQDNDWARAGLLLYG----VNPS--TVTEVQA 234

Query: 239 E--------ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           E        A +I + +   GE V YG      + S+IA  A+GYADGYP          
Sbjct: 235 ELKPAMRLVAPVIALHQLEKGESVGYGSGWSADKPSVIATVAMGYADGYPRQAEN----- 289

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                 G    ++G  V + G+++MDM   D+T   ++++GD ++++GP+I + +VA  +
Sbjct: 290 ------GTPAMVRGKRVGLAGRVSMDMLTIDVTGIENLQLGDDVELWGPNIDVREVAACA 343

Query: 351 GTTNYDLLVRIGTRYAKF 368
            T ++ LL  +  R  + 
Sbjct: 344 DTISWHLLTGVSGRVPRV 361


>gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 822

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 172/375 (45%), Gaps = 32/375 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + +    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEVNLNAVVDNLNYYRSFMKPETKMVCMVKASAYGAGAVEIAKTLQDHQVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQL-TFYSKLMSCGVSH-P 123
           GV LR     A I ++   +P       +F+ +L P + S   L     +    GV+H P
Sbjct: 523 GVDLRKAGITANIMIM---NPEMSSFPTLFEYDLEPEVYSFRLLEALIHEAEKEGVTHFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACAD-DPSSHVNSVQLER 181
             +++DTG +RLG   ++ +        ++   +   + SH   +D D     ++ Q E 
Sbjct: 580 IHVKLDTGMHRLGFDPEKDMPLLVERLKRQSAVIPRSVFSHFVGSDSDDFDAFSARQYEL 639

Query: 182 F-----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F     +   ++   I   + +S+GI   P+ H ++ R G+ LYG   + N+   +  + 
Sbjct: 640 FLKGSAQLQQAYSHKILRHICNSAGIEHFPDRHLEMVRLGLGLYGINSRNNEI--LHNIS 697

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I +    + V Y  + +LTRDS IA   IGYADG    L             
Sbjct: 698 TLKTTILQIHEVPKEDTVGYSRKGRLTRDSRIAALPIGYADGLDRKLG------------ 745

Query: 297 GGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
            G+ +  + G   P +G I MD+ M D+TD +    GD   IFG D+ +  ++ A GT  
Sbjct: 746 CGRAYCLVNGRRAPYVGNICMDVCMIDVTD-IDCREGDTAIIFGDDLPVTVLSDAVGTIP 804

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  +  R  + Y
Sbjct: 805 YEILTGVSARVKRVY 819


>gi|237755608|ref|ZP_04584223.1| alanine racemase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692235|gb|EEP61228.1| alanine racemase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 311

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 162/322 (50%), Gaps = 36/322 (11%)

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           ++ F V +  EG +LR       I +L G+   + +I+   NLIPVIS   QL    KL 
Sbjct: 11  IEYFCVATPLEGKELRENGIFKNILILGGVLKEETEILNQYNLIPVISDFNQLEVARKLK 70

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSH 173
           +        L+ DTG  RLG  L+  E +      F     ++  +++HL+ AD D    
Sbjct: 71  N----RKIHLKFDTGMRRLGFYLENVEKIKPLLKEF-----EIEGVLTHLSSADTDREYT 121

Query: 174 VNSVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           +N  Q++ F+ +++    K     + +S+G++   ++   + R G+++YG  +K  + +P
Sbjct: 122 IN--QIKEFKEILNLLDVKPKYIHVQNSAGVVYECDFC-NVIRVGLAMYG--EKPFEDYP 176

Query: 232 MQ--TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++   V++ +++II I+    G+ VSY G     +   +A+   GYADG P +LS     
Sbjct: 177 IELKQVMSVKSKIISIKDVKTGDRVSYNGSFVAKKPMKVAIVPFGYADGLPRSLS----- 231

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
            +   FL     + G   PILGKITMDMT+ D+++  +I +GD + I G      I   D
Sbjct: 232 -NRWFFL-----VNGKEAPILGKITMDMTIVDVSEIENINIGDEVVIIGESGDKRITFGD 285

Query: 346 VALASGTTNYDLLVRIGTRYAK 367
           +A   GT +Y+++  I  R  +
Sbjct: 286 IANIVGTISYEIMCGISKRVVR 307


>gi|326939811|gb|AEA15707.1| alanine racemase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 391

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 169/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 71  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 129

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 130 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGIFTHYSTADEIDKSYTNMQTSLFEK 189

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 190 AVNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPAL 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 250 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A    T
Sbjct: 299 KGYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENITVEEIADMLST 358

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 359 INYEVTCMLDRRIPRVY 375


>gi|227494580|ref|ZP_03924896.1| alanine racemase [Actinomyces coleocanis DSM 15436]
 gi|226832314|gb|EEH64697.1| alanine racemase [Actinomyces coleocanis DSM 15436]
          Length = 397

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 175/398 (43%), Gaps = 45/398 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  ID+ A+ +N   + A + N +   VVK +AYG G   +A AL  AG +   V  +EE
Sbjct: 8   RALIDIAAITHNAKLLLAKAPNTQHLGVVKADAYGHGHASVAVALARAGYRAIGVAQIEE 67

Query: 68  GVKLRLYTPQA---RIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVS 121
            + +R     A    + +   + P    ++    +   I V +S P     + L  C + 
Sbjct: 68  ALAVRDALDIAGFYDVMLFSWVIPADGTLVASEAIERGIEVAASTP--VQVAMLNDCAML 125

Query: 122 HPYA---LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD------PSS 172
              A   L++DTG +R G +L E      ++      ++  + SHLACAD+       ++
Sbjct: 126 RNPARLHLKIDTGMSRAGATLDEFAQLIEDALAAPNIKIVGVWSHLACADELTEDGMAAT 185

Query: 173 HVNSVQLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           +      +R   ++S Y  +     L ++S  L  P   + + R GI +YG T     + 
Sbjct: 186 NAQKDVFDRACQMLSDYGVRDFTRHLGATSVTLWHPQLQYDMVRDGIGIYGLTPNPETAS 245

Query: 231 P----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                +  V+   A ++ +++   G  VSYGG      D  + +  +GY DG P   S  
Sbjct: 246 SEELGLMPVMNLSANLMQVKRIKQGAKVSYGGTWVAETDRWLGLVPLGYGDGVPRHAS-- 303

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE---------VGDYIQIF 337
            +    SV+ GG+        P++G++ MD  M D+  ++  +          GD   +F
Sbjct: 304 -NHAEVSVYAGGRVM----RCPVVGRVCMDQFMIDLGPAVDAQGVDLPAPAVAGDTAVLF 358

Query: 338 G-PD-----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G P+       +DD A A  T NY+++ R+G+R  + Y
Sbjct: 359 GNPERFPGCPSVDDWAQACDTINYEIVTRLGSRVPREY 396


>gi|146743624|gb|ABQ43043.1| alanine racemase [Borrelia burgdorferi]
          Length = 358

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 155/348 (44%), Gaps = 27/348 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 26  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 85

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 86  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 143

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 144 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 201

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE +S
Sbjct: 202 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGEKIS 261

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 262 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 310

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           ++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG+
Sbjct: 311 NLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGS 358


>gi|315281568|ref|ZP_07870169.1| alanine racemase [Listeria marthii FSL S4-120]
 gi|313614777|gb|EFR88320.1| alanine racemase [Listeria marthii FSL S4-120]
          Length = 368

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 164/377 (43%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +    L  N    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQKQLPENVALWAVVKANAYGHGIIEVAKTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYA 125
            + LR    Q    ++ G    ++  +   N I        LT + +  L + G+  P  
Sbjct: 71  ALALREAGFQDDFILVLGATRQEDANLAAKNRI-------SLTVFREDWLDNLGLEAPLQ 123

Query: 126 --LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ S +EA          K  QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRSAEEARHIESTIAENKQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
            T+++  K   I    A+S+  LL    +F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 TTILTSLKERPIFVHTANSAASLLQSQMNFDAIRFGISMYGLTPSKEIKTSLPFELRPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++L+++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVLVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G   PI+G++ MD T+  +      + G  + I G D    I  DD A    T
Sbjct: 296 ----LVDGEHAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAAEYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLTERIPRKY 366


>gi|255026477|ref|ZP_05298463.1| alanine racemase [Listeria monocytogenes FSL J2-003]
          Length = 368

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 165/377 (43%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    Q    ++ G    ++  +   N I +       +  LT  + L        
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEHLTLEAPLR------- 123

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G + PI+G++ MD T+  +      + G  + I G D    I  DDVA    T
Sbjct: 296 ----LVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNAITADDVAQYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|228939234|ref|ZP_04101827.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228972113|ref|ZP_04132729.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228978725|ref|ZP_04139096.1| Alanine racemase [Bacillus thuringiensis Bt407]
 gi|228780986|gb|EEM29193.1| Alanine racemase [Bacillus thuringiensis Bt407]
 gi|228787597|gb|EEM35560.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228820429|gb|EEM66461.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 408

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 169/377 (44%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I +L        + +   +++  +  V  L   +++ +  +     +
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEI-ANRLQKKVQI 146

Query: 127 QV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           QV  DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGIFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K  GI+      ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G     +I ++++A    T
Sbjct: 316 KGYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENITVEEIADMLST 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|254827830|ref|ZP_05232517.1| alanine racemase [Listeria monocytogenes FSL N3-165]
 gi|258600211|gb|EEW13536.1| alanine racemase [Listeria monocytogenes FSL N3-165]
          Length = 368

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 164/377 (43%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A    +AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKDAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    Q    ++ G    ++  +   N I +       +  LT  + L        
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLENLTLEATLR------- 123

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G   PI+G++ MD T+  +      + G  + I G D    I  DD A    T
Sbjct: 296 ----LVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|20137250|sp|Q9S5V6|ALR_BACPS RecName: Full=Alanine racemase
 gi|4586399|dbj|BAA76373.1| alanine racemase [Bacillus psychrosaccharolyticus]
          Length = 383

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 159/372 (42%), Gaps = 27/372 (7%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L A+  N  +M   L       AVVK NAYG G  ++A     AG     V  ++E 
Sbjct: 13  EINLDAIFENAANMKKHLPPEITLFAVVKANAYGHGDVEVAETAIQAGAGYLAVAFLDEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR     A I VL    P   +I    ++   +     L      +  G      L+ 
Sbjct: 73  LALRKKGITAPILVLGASRPEDAQIAARESITLTVFQAGWLEAAQSFLE-GTVLTIHLKC 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  R+G+  QE ++       K K   L  I +H A AD   +   S QL RF  +++
Sbjct: 132 DSGMGRIGIRKQEEMNEIERFLQKTKCFVLEGIFTHFATADQLDTEYFSKQLARFEEMLT 191

Query: 188 HYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEAR 241
             K     +  A+S+ +L  PN  F   R GISLYG +  +         ++   + + +
Sbjct: 192 WLKEKPKYVHAANSAALLRFPNAVFNSVRMGISLYGLSPSMEMKEVLPFALRPAFSLKTK 251

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ ++    G+ VSYG       D+ I    IGYADG+   L G +              
Sbjct: 252 LVHVKNISKGQSVSYGATYTAEEDTWIGTLPIGYADGWIRMLQGQEV------------L 299

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           ++G   P++G+I MD  M  +  S    VG  + + G +    I +DD+A    T NY++
Sbjct: 300 LEGGRSPLVGRICMDQCMVKL--SREFPVGTEVTLIGKNGTECITVDDIAEKLNTINYEV 357

Query: 358 LVRIGTRYAKFY 369
              I +R  + Y
Sbjct: 358 TCMISSRVPRMY 369


>gi|163839626|ref|YP_001624031.1| alanine racemase [Renibacterium salmoninarum ATCC 33209]
 gi|162953102|gb|ABY22617.1| alanine racemase [Renibacterium salmoninarum ATCC 33209]
          Length = 385

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 171/383 (44%), Gaps = 45/383 (11%)

Query: 11  IDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL  +++N   + +L    R   A+VK +A+G G   I+ A+  AG     V  + E +
Sbjct: 19  VDLGIIESNVRFLKSLPDAERELIAIVKADAFGHGMIPISHAMLRAGADWLGVAHLSEAM 78

Query: 70  KLRLYTPQARIFVLYGI-----HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +LR     A IF          HPG E  I     + + S +  +       S G+S   
Sbjct: 79  ELREAGITAPIFAWLATLDTDYHPGIEANID----LSISSRLDAVRIAEAASSVGMSAKV 134

Query: 125 ALQVDTGFNRLG----LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            L++DTG +R G    L  Q   + +   + K L  ++ I SHL+   +     N +Q +
Sbjct: 135 HLKIDTGLHRAGSPVELWPQLLAEISSADWAKSL-HVAGIWSHLSDPGEAEGKANGIQYQ 193

Query: 181 RFRTLISHYK--GIEAS---LASSSGI----LLGP-NYHFQLTRPGISLYGGTDKINKSH 230
            F   ++     GI+     L+SS+ +       P      L+R G  LYG  D+     
Sbjct: 194 AFTEAVAVAASFGIKPEYLHLSSSASVGRFGKASPGTAQLNLSRAGAGLYGIDDRGVGVK 253

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P  T+   E+RI+  R+  AG  VSYGG     R + +A+  +GYADG P  + G     
Sbjct: 254 PAMTL---ESRIMQFRRVPAGSAVSYGGDWVSDRATNLALVPLGYADGIPRCIKGASV-- 308

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA- 349
                     F +G  +PI+G+I MD  + D  D L +EVGD + IFG     +  AL  
Sbjct: 309 ----------FCRGQRLPIVGRIAMDQFVVDTGD-LQLEVGDQVLIFGTGELGEPTALEW 357

Query: 350 ---SGTTNYDLLVRIGTRYAKFY 369
              +GT  +++   +G R A+ Y
Sbjct: 358 AQWAGTIEHEIYTGLGPRVARRY 380


>gi|111220586|ref|YP_711380.1| alanine racemase [Frankia alni ACN14a]
 gi|111148118|emb|CAJ59786.1| Alanine racemase [Frankia alni ACN14a]
          Length = 387

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 173/383 (45%), Gaps = 43/383 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++L A++++  ++ A +G+A T AVVK + YG G    A A  +AG        +EE + 
Sbjct: 23  VELDAVRDSVAALAARAGDAATMAVVKADGYGHGMIPCARAALDAGASWLGTAVLEEALA 82

Query: 71  LRLYTPQARIFVLYGIHPGQ---EKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYAL 126
           LR     A +       PG+   E I    ++    S ++ ++   ++L   G      L
Sbjct: 83  LRAAGITAPVLCWLAT-PGERFGEAISAGIDVSASASWTLTEIAAAARL--AGRPARVHL 139

Query: 127 QVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           + DTG  R G           +A         +  G    + SH A AD P       Q+
Sbjct: 140 KADTGLGRAGAMPGDWPGLCDQAAALQAEGVIEAFG----VWSHFAFADAPGHATVQAQI 195

Query: 180 ERFRTL--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--- 231
             FR    I+   G+  +   LA+S+  L+ P  HF L RPG+S+YG +       P   
Sbjct: 196 GAFRDAVDIAEKAGLAPTVRHLANSAATLVSPEAHFDLVRPGVSVYGLSPGPEVGPPARF 255

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++  +   L+++  AG  VSY  +    R++ +A+  +GYADG P   +     +
Sbjct: 256 GLRPAMSLVSHAALVKRVPAGTGVSYAHRYTTARETTLALVPLGYADGIPRAAT-----N 310

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
           +  V  GG+         I G + MD  + D+ D   +  GD +++FGP    +   DD 
Sbjct: 311 TGEVLFGGR------RRRIAGTVCMDQFVLDVGDD-EVAAGDEVRLFGPGDLGEPTADDW 363

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A+A GT NY+++ RIG R  + Y
Sbjct: 364 AVALGTINYEIVTRIGQRVPRVY 386


>gi|146743632|gb|ABQ43047.1| alanine racemase [Borrelia burgdorferi]
          Length = 361

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 154/348 (44%), Gaps = 27/348 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 28  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 87

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 88  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 145

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 146 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 203

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE +S
Sbjct: 204 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGEKIS 263

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 264 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 312

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           ++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG 
Sbjct: 313 NLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGN 360


>gi|331699117|ref|YP_004335356.1| Alanine racemase [Pseudonocardia dioxanivorans CB1190]
 gi|326953806|gb|AEA27503.1| Alanine racemase [Pseudonocardia dioxanivorans CB1190]
          Length = 419

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 164/356 (46%), Gaps = 45/356 (12%)

Query: 9   LKIDLTALKNNWH--SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L +DL A+++N    S  A +  A T AVVK + YG G   +A A   AG     V +++
Sbjct: 33  LVVDLAAVRHNVGLLSRGAAASGAATMAVVKSDGYGHGAADVARAALQAGASWLGVCTLD 92

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-------LMSCG 119
           E + LR    +A   VL  +H   E      +  P +++   L+  S          +  
Sbjct: 93  EALALRADGIEA--PVLSWLHLPHE------DFAPAVAAGVDLSVSSHGHLDAVLAGARA 144

Query: 120 VSHPYAL--QVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHV 174
           V  P  L  ++DTG +R G    +  D    +         ++  + SHLA AD     V
Sbjct: 145 VDRPARLHLKIDTGLSRNGCPEDDWPDLVDAAAKAAAAGRCEVVAVWSHLAVADVARHPV 204

Query: 175 NSVQLERFRTL--ISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-- 228
              Q  RF     ++  +G+     LA+S+  +  P+ H+ L RPGI++YG  D + +  
Sbjct: 205 TEAQAARFDAAWRVARDRGLTPIRHLANSAATMTRPDLHYDLVRPGIAVYG-LDPLGRPV 263

Query: 229 -SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
              P++  +T   R++L+++  AGE VSYG +    RD+++A+  IGY DG P  ++   
Sbjct: 264 AESPLRPAMTVRGRVVLVKQVRAGEGVSYGHEFTTPRDTVLALVPIGYGDGVPRRMN--- 320

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGP 339
                    GG+   ++ G   P++G++ MD  + D       EV  GD   +FGP
Sbjct: 321 --------FGGRMRVWLAGRSRPVVGRVCMDQVVVDCGPDGGAEVREGDVAVLFGP 368


>gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
 gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
          Length = 825

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 175/377 (46%), Gaps = 36/377 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + L    +   ++K +AYG G  +IA +L +  V    V   +E
Sbjct: 466 LEVNLNAVVDNLNYYRSFLKPETKLVCMIKADAYGAGSVEIAKSLQDHQVDYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-P 123
           G  LR     + I ++   +P     K +FD +L P + S   L    K     G+++ P
Sbjct: 526 GAMLRGNGITSSIMIM---NPELSAFKTMFDNDLEPEVYSFRLLDALVKAAEKEGITNFP 582

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACAD-DPSSHVNSV 177
             +++DTG +RLG   ++ LD       +KL   + +I     SH   AD D     +++
Sbjct: 583 VHIKLDTGMHRLGFDPEKDLD----KLIEKLQHQNAVIPRSVFSHFVGADSDDFDSFSAL 638

Query: 178 QLERF-----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q ERF     R   +    I   + +S+GI   P +   + R G+ LYG   + N+   +
Sbjct: 639 QFERFDRASKRLQQAFEHKILRHMDNSAGIEHFPGWQMDMCRLGLGLYGVNSRNNEI--I 696

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V T ++ I+ +R+  A E V Y  + KL RDS+IA   IGYADG    L         
Sbjct: 697 NNVSTLKSTILQLRRVPADETVGYSRKGKLMRDSVIAAIPIGYADGLNRHLGN------- 749

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                G   + G     +G I MD+ + D+T  +  + GD ++IFG  + +  ++    T
Sbjct: 750 ---RRGYCLVNGCKAEYVGNICMDVALVDVT-GIDCKEGDTVEIFGDHLPVTVLSKILDT 805

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  + +R  + Y
Sbjct: 806 IPYEVLTSVSSRVKRIY 822


>gi|217965017|ref|YP_002350695.1| alanine racemase [Listeria monocytogenes HCC23]
 gi|254802368|sp|B8DG73|ALR_LISMH RecName: Full=Alanine racemase
 gi|217334287|gb|ACK40081.1| alanine racemase [Listeria monocytogenes HCC23]
 gi|307570423|emb|CAR83602.1| alr [Listeria monocytogenes L99]
          Length = 368

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 168/377 (44%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYA 125
            + LR    Q    ++ G    ++  +   N I        LT + +  L    +  P  
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHI-------SLTVFREDWLEDLTLEAPLR 123

Query: 126 --LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG        V +
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF------HVLV 297

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
           GG+      + PI+G++ MD T+  +      + G  + I G D    I  DD A    T
Sbjct: 298 GGE------LAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNAITADDAAQYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|15606873|ref|NP_214253.1| alanine racemase [Aquifex aeolicus VF5]
 gi|3913028|sp|O67687|ALR_AQUAE RecName: Full=Alanine racemase
 gi|2984113|gb|AAC07650.1| alanine racemase [Aquifex aeolicus VF5]
          Length = 338

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 180/366 (49%), Gaps = 43/366 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           L+I+   +++N   ++  SG  +  AV+K +AYG+G  ++A  L     V  F V  VEE
Sbjct: 6   LEINSERIRHNVKKLSEFSGK-KVIAVIKADAYGIGSIQMAKILEPIEEVDAFAVACVEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           GV+LR    +  I +L G+   +  ++ +  L PV+S +  L              + ++
Sbjct: 65  GVELRKMGIKKEILILGGVLKDEVPLVEEYFLTPVVSDIEHLRAIG-----NRDIKFHVK 119

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  RLG  L E +   H+       ++  I+SHL+   D     + +Q+++F  ++ 
Sbjct: 120 YDTGMGRLGF-LNEVI---HDP------RVEGIMSHLSSPAD--EEFSKLQIKKFEEIVK 167

Query: 188 HYKGIEA-SLASSSGILLGPNYHFQLT---RPGISLYGGTDKINKSHP--MQTVVTAEAR 241
            Y  +E   + SS+G++    Y    T   R G+++YG  +K  K++P  ++  +T +A+
Sbjct: 168 KYTKVEKIHMESSAGVV----YRVPFTTHIRVGLAMYG--EKPLKNYPVDIKPALTLKAK 221

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +++      VSY       + +   V A GYADG   TLS      + S  L     
Sbjct: 222 LISVKELPENYPVSYSRTYVTKKKTKTGVVAFGYADGLMKTLS------NRSYLL----- 270

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            KG  +PI G ITMDMT+ D+ ++   +VGD++ +   +    ++A  +GT  Y+L+  +
Sbjct: 271 YKGEKLPIFGNITMDMTIVDLKNT-DAKVGDWVYVVNEERTFTELAREAGTIPYELMCNL 329

Query: 362 GTRYAK 367
             R  +
Sbjct: 330 SKRIKR 335


>gi|159039766|ref|YP_001539019.1| alanine racemase [Salinispora arenicola CNS-205]
 gi|189027391|sp|A8M4B3|ALR_SALAI RecName: Full=Alanine racemase
 gi|157918601|gb|ABW00029.1| alanine racemase [Salinispora arenicola CNS-205]
          Length = 372

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 174/378 (46%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A++ N   + + S  A   AVVK + YG G    A A  + G     V +++E 
Sbjct: 6   VRVDLDAIRENVSWLRSGSA-AELMAVVKGDGYGHGMVPAALAALDGGADWLGVCTLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPG---QEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPY 124
           + LR     A I     + PG    E +    +L    +SV QL        + G     
Sbjct: 65  LTLRREGITAPILAWL-LAPGLPLHEGVAAGIDL--GAASVAQLDEMVQAGRTAGRPARL 121

Query: 125 ALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLER 181
            L++DTG +R G ++ +     T  +  +  G + ++   SH   AD P       QL  
Sbjct: 122 HLKIDTGLSRGGATVSDWPGLLTAAAKAQADGTVEVVGVWSHFVYADAPGHPTTDRQLAV 181

Query: 182 FRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F   +   +  G+      LA+S+  L  P+ HF L RPG+++YG +    +S  ++  +
Sbjct: 182 FHEGLDMVEKAGLRPRYRHLANSAATLTRPDAHFDLVRPGLAVYGLSPVAGESFGLRPAM 241

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           TA AR++L ++  AG  VSYG      RDS +AV  +GYADG P + S     +S  V L
Sbjct: 242 TARARVMLTKQVPAGAGVSYGHTYTTERDSTLAVIPLGYADGVPRSAS-----NSGPVHL 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
           G      G    I G++ MD  + D  D   +  GD   +FG     +   DD A A GT
Sbjct: 297 G------GVRRTISGRVCMDQFVLDCGDD-PVAPGDVAVLFGSGRNGEPTADDWAEAVGT 349

Query: 353 TNYDLLVRIG-TRYAKFY 369
            NY+++ R G TR  + Y
Sbjct: 350 INYEIVTRFGSTRVPRSY 367


>gi|148379617|ref|YP_001254158.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|153933955|ref|YP_001383998.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|153934941|ref|YP_001387541.1| alanine racemase [Clostridium botulinum A str. Hall]
 gi|168180317|ref|ZP_02614981.1| alanine racemase [Clostridium botulinum NCTC 2916]
 gi|226948986|ref|YP_002804077.1| alanine racemase [Clostridium botulinum A2 str. Kyoto]
 gi|148289101|emb|CAL83195.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|152929999|gb|ABS35499.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|152930855|gb|ABS36354.1| alanine racemase [Clostridium botulinum A str. Hall]
 gi|182668797|gb|EDT80775.1| alanine racemase [Clostridium botulinum NCTC 2916]
 gi|226840935|gb|ACO83601.1| alanine racemase [Clostridium botulinum A2 str. Kyoto]
          Length = 389

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 173/389 (44%), Gaps = 53/389 (13%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +++L  L  N  ++          AVVK N YG G   IA  L   G     V  + E  
Sbjct: 11  EVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLSVACLSEAT 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPYAL 126
           +LR       I +L    P   + I D N+ PV+ S     QL+  + L +  V    A 
Sbjct: 71  ELREGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDCANQLSKAASLKNRIVKTHIA- 129

Query: 127 QVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
            VDTG  RLG      SL+E          K++  LS I      SH + +D+     + 
Sbjct: 130 -VDTGMGRLGFDPTVESLEEI---------KRIQDLSNIKIEGLCSHFSSSDEKDKSYSE 179

Query: 177 VQLERFRTLISHYKGIEASL-------ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
            Q + F+      K IE ++       ++S+ I+  P+ +    R GI LYG   + ++N
Sbjct: 180 YQFKIFQNF--RKKLIEMNMKIPIYHMSNSAAIIDLPSTYLDGVRAGIILYGYYPSMEVN 237

Query: 228 KSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           K +  ++ V+T +A I+ I+   +G+ V Y  + K  R S IA+  +GY DGY   LS  
Sbjct: 238 KENLHIKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR 297

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                      GK  I G   PI+G I MD  M D+TD   ++VGD + I G D    ++
Sbjct: 298 -----------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLR 346

Query: 343 LD--DVALASGTTNYDLLVRIGTRYAKFY 369
            D  D+A   G T+ +++  I  R  + Y
Sbjct: 347 YDAEDIASKVGMTSGEIMSIISKRVPRVY 375


>gi|146743634|gb|ABQ43048.1| alanine racemase [Borrelia burgdorferi]
 gi|146743636|gb|ABQ43049.1| alanine racemase [Borrelia burgdorferi]
 gi|146743638|gb|ABQ43050.1| alanine racemase [Borrelia burgdorferi]
          Length = 359

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 27/347 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 28  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 87

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 88  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 145

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 146 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 203

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE +S
Sbjct: 204 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGEKIS 263

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 264 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 312

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           ++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG
Sbjct: 313 NLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 359


>gi|47094893|ref|ZP_00232507.1| alanine racemase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898941|ref|ZP_05258865.1| hypothetical protein LmonJ_03970 [Listeria monocytogenes J0161]
 gi|254911571|ref|ZP_05261583.1| alanine racemase [Listeria monocytogenes J2818]
 gi|254935897|ref|ZP_05267594.1| alanine racemase [Listeria monocytogenes F6900]
 gi|47016775|gb|EAL07694.1| alanine racemase [Listeria monocytogenes str. 1/2a F6854]
 gi|258608485|gb|EEW21093.1| alanine racemase [Listeria monocytogenes F6900]
 gi|293589517|gb|EFF97851.1| alanine racemase [Listeria monocytogenes J2818]
          Length = 368

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 164/377 (43%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  +    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    Q    ++ G    ++  +   N I +       +  LT  + L        
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLENLTLEATLR------- 123

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G + PI+G++ MD T+  +      + G  + I G D    I  DD A    T
Sbjct: 296 ----LVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNVITADDAAQYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|220913351|ref|YP_002488660.1| alanine racemase [Arthrobacter chlorophenolicus A6]
 gi|219860229|gb|ACL40571.1| alanine racemase [Arthrobacter chlorophenolicus A6]
          Length = 437

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 169/389 (43%), Gaps = 55/389 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+++N   + A +  A+  AVVK +AYG G   +A A   AG     V  + E + 
Sbjct: 53  IDLDAIRHNVRRLAAAASPAKVMAVVKADAYGHGAVPVARAALEAGASWLGVAHISEALA 112

Query: 71  LRLYTPQARIFVLY---------GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           LR     A +              +  G +       L  ++++  +    +++      
Sbjct: 113 LRAAGIDAPLLAWLHTTDSNFGAAVAAGVDIGCSGWELERIVAAAREQERPARIH----- 167

Query: 122 HPYALQVDTGFNRLGLSLQ-------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
               L+VDTG  R G +L+       EA+++      + +G    I SHLA AD+P    
Sbjct: 168 ----LKVDTGLGRNGATLEYWDTLVGEAMEYQDQGLLRVVG----IFSHLAVADEPERPE 219

Query: 175 NSVQLERFRTL--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTD---KI 226
              QL  FR    ++   G++A    LA++   L  P+ HF L R G+ +YG +    + 
Sbjct: 220 TDHQLAAFRDALAVAEDAGVDAEVRHLANTPATLSRPDTHFDLVRVGLGIYGLSPFDGQT 279

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           +    ++  +    ++   +   AG+ VSYG   +    S + +  +GYADG        
Sbjct: 280 SAELGLRPAMALRTKVSQCKVVPAGQGVSYGLHYRTAAASTLGLIPLGYADGI------- 332

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIK-- 342
                P V  GG   + G   P++G+I MD  + D+   +  +  +G   ++FG      
Sbjct: 333 -----PRVATGGPVRVAGTTYPVVGRIAMDQMVIDLGQGVQGAALLGAEAELFGSGADGG 387

Query: 343 --LDDVALASGTTNYDLLVRIGTRYAKFY 369
              DD A A+GT NY+++ RI  R  + +
Sbjct: 388 PTADDWARAAGTINYEIVTRISPRVPRRF 416


>gi|52784371|ref|YP_090200.1| hypothetical protein BLi00551 [Bacillus licheniformis ATCC 14580]
 gi|52346873|gb|AAU39507.1| Alr [Bacillus licheniformis ATCC 14580]
          Length = 390

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 163/375 (43%), Gaps = 31/375 (8%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDLTALK N  +M    G + R  AVVK NAYG G  ++A A    G     V  ++E 
Sbjct: 14  EIDLTALKENVRNMKRHIGEHVRLMAVVKANAYGHGDAQVAKAALAEGASILAVALLDEA 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYALQ 127
           + LR    +  I VL  +      I  +  +I    SV  L      L        Y L+
Sbjct: 74  LSLRAQGIEEPILVLGAVPTEYASIAAEKRIIVTGYSVGWLKDVLGFLNEAEAPLEYHLK 133

Query: 128 VDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +DTG  RLG   +E +         N KL   + + +H A AD+  +   ++QL+RF+ L
Sbjct: 134 IDTGMGRLGCKTEEEIKEMMEMTESNDKL-NCTGVFTHFATADEKDTDYFNMQLDRFKEL 192

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQL---TRPGISLYG--GTDKINKSHP--MQTVVTA 238
           IS    ++  +  SS    G  +  QL    R GI +YG   + +I    P  ++ V + 
Sbjct: 193 ISPLP-LDRLMVHSSNSAAGLRFREQLFNAVRFGIGMYGLAPSTEIKDELPFRLREVFSL 251

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              +  ++K   GE VSYG      RD  I    +GYADG+   L+G +           
Sbjct: 252 HTELTHVKKIKKGESVSYGATYTAQRDEWIGTVPVGYADGWLRRLAGTEV---------- 301

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
              I G    I G+I MD  M  + +     VG  + + G      I +D++A    T N
Sbjct: 302 --LIDGKRQKIAGRICMDQFMISLAEEYP--VGTKVTLIGKQKDEWISVDEIAQNLQTIN 357

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   I +R  + +
Sbjct: 358 YEITCMISSRVPRMF 372


>gi|295698664|ref|YP_003603319.1| alanine racemase [Candidatus Riesia pediculicola USDA]
 gi|291156967|gb|ADD79412.1| alanine racemase [Candidatus Riesia pediculicola USDA]
          Length = 362

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 167/340 (49%), Gaps = 29/340 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL  N   +  L+ N+R  A+VK NAYG G + +   L +  V  F V+++EE  K
Sbjct: 6   IRKKALIYNIKKIQKLTNNSRIIAIVKSNAYGHGSKFVTRTLKDF-VDYFGVSNIEEAHK 64

Query: 71  LRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           +     +  I  L G I+  + K+     L  V+ +  Q+    K     +  P A  ++
Sbjct: 65  IVDDGIKNSIISLMGFINYEELKLASQLRLEVVVHNHEQINILEKEK---IKFPIAVWMK 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHV---NSVQLERF 182
           ++TG NRLG    +A+   +N   K   + +    ISH + A+    ++     +QL+RF
Sbjct: 122 INTGMNRLGFLPDQAVKI-YNRLKKCKNVRKPVNTISHFSSANIQEPYLFDFTQLQLDRF 180

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA---E 239
           +  I    G + S+ASSSGIL  P+ H +  R GI +YG + K  ++     ++ A   +
Sbjct: 181 KKFIIDKNG-KNSIASSSGILFWPSSHLRWVRAGIIMYGISPKFGRNGREFGLIPAMKLK 239

Query: 240 ARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +++I +R+   G+ + YG      R  + I + +IGY DGY       DS++S  +    
Sbjct: 240 SKLISVRQFKPGQTLGYGQNWINNRKKTYIGIVSIGYGDGY----HSCDSKNSWVL---- 291

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
              I G  VP++G I MDM   D+ + L  +VGD + I+G
Sbjct: 292 ---INGRRVPVIGSILMDMIFVDLGEHLCDKVGDEVIIWG 328


>gi|256831867|ref|YP_003160594.1| alanine racemase [Jonesia denitrificans DSM 20603]
 gi|256685398|gb|ACV08291.1| alanine racemase [Jonesia denitrificans DSM 20603]
          Length = 410

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 167/386 (43%), Gaps = 34/386 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           R  IDL A+  N  ++    G+    A   AVVK NAYG G    A A  + G     V 
Sbjct: 15  RAIIDLAAISQNVSTLATRLGDNGSHAAIMAVVKANAYGHGLVPAARAALHGGATWLGVA 74

Query: 64  SVEEGVKLRLYTPQARIFVLY---GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
              E + LR      RI       G+ P ++ I  D + + V +        S   + G 
Sbjct: 75  HAHEALALRQAGITDRILTWLHAPGV-PYRDLIAADID-VSVAAPWAAQEVISAAQAAGR 132

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLI--ISHLACADDPSSHVNS 176
                L+VDTG  R G++  + L F   +    +  G L+L+   SHLA AD+P      
Sbjct: 133 PARVHLKVDTGLGRNGVTPAD-LPFLLATLIDAQHAGHLTLVGVWSHLAFADEPHHPSVR 191

Query: 177 VQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q   F   I+  +   A L     A+S+  L  P   + L RPG+++YG +     +  
Sbjct: 192 EQARVFDDAITIVQAAGAHLEVRHIANSAATLTAPELAYDLVRPGLAIYGLSPIPQVASA 251

Query: 232 ----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++  +T +A I   ++  AG  VSY       RD+ IAV  +GYADG P   SG +
Sbjct: 252 AELGLRPAMTVQADIATAKRLPAGHGVSYAHHYVTARDTHIAVIPLGYADGIPRHASGHN 311

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDV 346
            E      LG    I G    I G++ MD  + D+ D  S+  G    +FG P + +   
Sbjct: 312 GE------LGAPVSINGVTYAIAGRVCMDQIVIDVHDD-SVRAGHTATLFGDPTLGVPSA 364

Query: 347 ---ALASGTTNYDLLVRIGTRYAKFY 369
              A A+GT +Y++  RI  R  + Y
Sbjct: 365 QQWADATGTISYEITTRIADRLPRMY 390


>gi|146743628|gb|ABQ43045.1| alanine racemase [Borrelia burgdorferi]
 gi|146743630|gb|ABQ43046.1| alanine racemase [Borrelia burgdorferi]
          Length = 358

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 27/347 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 27  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 86

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 87  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 144

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 145 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 202

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE +S
Sbjct: 203 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGEKIS 262

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 263 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 311

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           ++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG
Sbjct: 312 NLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 358


>gi|297571884|ref|YP_003697658.1| alanine racemase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932231|gb|ADH93039.1| alanine racemase [Arcanobacterium haemolyticum DSM 20595]
          Length = 374

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 162/363 (44%), Gaps = 42/363 (11%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
           +A   A+VK N YG G E IA   + AG+    +  + E + LR       +   +   P
Sbjct: 28  DATLMAIVKANGYGHGVELIAQWAWEAGIDWLGLAQLNEALTLRQSHTHGHVLA-WIFAP 86

Query: 89  G---QEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALD 144
           G   Q  I  + +L +    ++ ++   ++           ++VDTG  R G  L +   
Sbjct: 87  GADFQRAIEQNIDLSVGATWAIDEIEAAARACRRPAR--IHVKVDTGMTRGGFDLDQLPS 144

Query: 145 FTHNSFNKKLG-----QLSLIISHLACADDP-SSHVNSVQLERFRTLISHYKGIEAS--- 195
               +  KKL      Q+  + SHLACADDP S    ++Q++RF    S  K  E     
Sbjct: 145 VF--ARVKKLAAEGIIQIVGLWSHLACADDPHSDAATALQVDRFEQARSLAKEAEVEIPF 202

Query: 196 --LASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHP---MQTVVTAEARIILIRKAL 249
             LA+SSGIL  P  H+ + RPGI LYG   +    + P   ++ ++T EA +IL R+  
Sbjct: 203 CHLAASSGILWHPETHYDMVRPGIVLYGLSPNPAYATGPELGLEPLMTLEANVILTREVP 262

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
            G  +SYG        + +AV  +GYADG     S     ++ SV L G         PI
Sbjct: 263 EGVGISYGHTHITDEPTRLAVVPVGYADGISRRAS-----NALSVTLNGD------QAPI 311

Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVALASGTTNYDLLVRIGTRY 365
            G + MD     + ++     GD   +FGP+ K     D+ A  + T NY++   +G R 
Sbjct: 312 CGVVCMDQF---VVNAPHAHAGDTAVLFGPEHKGYLTADNWAEKTDTINYEIFCNLGPRI 368

Query: 366 AKF 368
            + 
Sbjct: 369 PRI 371


>gi|269123699|ref|YP_003306276.1| alanine racemase [Streptobacillus moniliformis DSM 12112]
 gi|268315025|gb|ACZ01399.1| alanine racemase [Streptobacillus moniliformis DSM 12112]
          Length = 342

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 164/364 (45%), Gaps = 38/364 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A K N   +      ++  A+VK NAYG G  KI  +    G+  F V  +EE  +
Sbjct: 7   IDLDAFKKNLDKILEKIPASKVMAIVKANAYGHGSIKIVESAIEKGINFFGVARIEEAEE 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +    P+  + VL  I     +      +   ISS   + +   ++   ++  +   +DT
Sbjct: 67  ILNIFPKVDVLVLSPIMKSDIENAVSKGIHLTISSFEDIEY---ILENKINGNFHYALDT 123

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--- 187
           G  R+G    E   +   S  K +G    I SHL+ AD+ + + N +Q+E+F  +++   
Sbjct: 124 GMGRIGFMEDEI--YRAFSMLKPIG----IYSHLSSADNDNEYTN-MQIEKFNRIVNDLD 176

Query: 188 -HYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
             YK I  S  S +      NY  + L R GI +YG       +   + V+T +AR+  I
Sbjct: 177 VKYKHILNSFGSIN------NYEDYDLYRLGIIMYGAE----MTDIFKPVMTFKARVNHI 226

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +       + Y      +    IA  + GYADG   ++S     +   V+  GK +    
Sbjct: 227 KVLEKDTYIGYSKTYLASCGEKIATISCGYADGMLRSMS-----NRSKVYFNGKYY---- 277

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             PI+G I MD  M  + D   I+V DY++IFG +I + D+A    T +Y+LL  I  R 
Sbjct: 278 --PIVGNICMDQFMIKVDD--DIKVNDYVEIFGNNILVGDLAKELNTISYELLCAISHRV 333

Query: 366 AKFY 369
            + Y
Sbjct: 334 KRIY 337


>gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132]
 gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132]
          Length = 802

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 162/373 (43%), Gaps = 27/373 (7%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L A+ +N  +    L  + +   +VK  AYG G E +A  L    V    V   +E
Sbjct: 442 LEINLDAITHNLNYYRRQLGSSTKIMVMVKAFAYGSGNE-VAAWLQYHRVDYLTVAFPDE 500

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
           GV LR       I V+    P     IF+  L P I S   L  Y K             
Sbjct: 501 GVALRENGISLPIMVMNS-DPDSYSTIFEYGLEPEIYSFRVLEAYLKAKENWKPDELTKI 559

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ----LE 180
            L++DTG +RLG   +E         +    Q++ I SHL  AD+      S +     E
Sbjct: 560 HLKIDTGMHRLGFLEKEVPPLLKALEDHPKVQVASIFSHLVGADEAKHDAFSKEQIACYE 619

Query: 181 RFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           R  + I +  G      + +++GI+  P   + ++R GI LYG      +   +QTV T 
Sbjct: 620 RASSAIINGLGYSPIRHICNTAGIIRFPEARYDMSRLGIGLYGVASSGLEQKDLQTVATL 679

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I  I+     E V YG    L R+S IA  AIGYADGY               F  G
Sbjct: 680 KTTISQIKVLDPKETVGYGRYGVLNRESKIATIAIGYADGYDRG------------FGRG 727

Query: 299 KGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
             F  + G   P +G I MDM M D+TD +  + GD + +FG +  L ++A    T  Y+
Sbjct: 728 NAFVLVHGKACPTMGSICMDMCMIDVTD-VDCKEGDEVIVFGENPSLTELAEKINTIPYE 786

Query: 357 LLVRIGTRYAKFY 369
           +L  I +R  + +
Sbjct: 787 ILTGISSRVKRVF 799


>gi|163119246|ref|YP_077790.2| D-alanine racemase [Bacillus licheniformis ATCC 14580]
 gi|145902752|gb|AAU22152.2| D-alanine racemase [Bacillus licheniformis ATCC 14580]
          Length = 389

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 163/375 (43%), Gaps = 31/375 (8%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDLTALK N  +M    G + R  AVVK NAYG G  ++A A    G     V  ++E 
Sbjct: 13  EIDLTALKENVRNMKRHIGEHVRLMAVVKANAYGHGDAQVAKAALAEGASILAVALLDEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYALQ 127
           + LR    +  I VL  +      I  +  +I    SV  L      L        Y L+
Sbjct: 73  LSLRAQGIEEPILVLGAVPTEYASIAAEKRIIVTGYSVGWLKDVLGFLNEAEAPLEYHLK 132

Query: 128 VDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +DTG  RLG   +E +         N KL   + + +H A AD+  +   ++QL+RF+ L
Sbjct: 133 IDTGMGRLGCKTEEEIKEMMEMTESNDKL-NCTGVFTHFATADEKDTDYFNMQLDRFKEL 191

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQL---TRPGISLYG--GTDKINKSHP--MQTVVTA 238
           IS    ++  +  SS    G  +  QL    R GI +YG   + +I    P  ++ V + 
Sbjct: 192 ISPLP-LDRLMVHSSNSAAGLRFREQLFNAVRFGIGMYGLAPSTEIKDELPFRLREVFSL 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              +  ++K   GE VSYG      RD  I    +GYADG+   L+G +           
Sbjct: 251 HTELTHVKKIKKGESVSYGATYTAQRDEWIGTVPVGYADGWLRRLAGTEV---------- 300

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
              I G    I G+I MD  M  + +     VG  + + G      I +D++A    T N
Sbjct: 301 --LIDGKRQKIAGRICMDQFMISLAEEYP--VGTKVTLIGKQKDEWISVDEIAQNLQTIN 356

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   I +R  + +
Sbjct: 357 YEITCMISSRVPRMF 371


>gi|187736333|ref|YP_001878445.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426385|gb|ACD05664.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835]
          Length = 367

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 163/376 (43%), Gaps = 37/376 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +ID  AL++N + +  +  + R  A+VK  AYG G E +  AL       F V +V E  
Sbjct: 12  QIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCAFFGVATVAEAC 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQV 128
           ++R    +   F+L     G+ + I        +SS+ +   ++ L +  G +    L V
Sbjct: 72  RVRDAGAKTCPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGALYGKTVHVHLGV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-----IISHLACADDPSSHVNSVQLERFR 183
           DTG  R G    E    T      KL Q S      + SHL+ A D  S  +  Q+  F 
Sbjct: 132 DTGMGRSGFLPSELHGLT-----DKLKQFSYLDLEGVFSHLSAASDDISFTHG-QISGFT 185

Query: 184 TLISH----YKGIEASLASSSGILLGPNYHF---QLTRPGISLYGGT---DKINKSHPMQ 233
             ++     ++     L SS+ +    NY      + R G  LYG +      NK   ++
Sbjct: 186 EAVNELSQGHRYKFRHLCSSAAVF---NYKVPCANMARLGRILYGYSPMPSPYNKE--LR 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  +RI LIR       VSY         + +A   IGYADGY   LS         
Sbjct: 241 PTMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQ------- 293

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G + +I G   P+LG++TMD  M D+T    +E GD ++I GP++  +++   + T 
Sbjct: 294 ---GARVYINGQYCPVLGRVTMDQIMVDVTYMDHVETGDLVEIMGPNVSWEELTRRANTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
             ++L  I  R  + Y
Sbjct: 351 PSNVLTSISARVPRIY 366


>gi|229161081|ref|ZP_04289069.1| Alanine racemase [Bacillus cereus R309803]
 gi|228622440|gb|EEK79278.1| Alanine racemase [Bacillus cereus R309803]
          Length = 408

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ID+ A+K+N         N + A  A VK N YG G  ++A +   AGV    V  V+
Sbjct: 28  VEIDVNAVKHNVKEFKKHVNNEQIAMMAAVKANGYGHGAVEVAKSAIEAGVNQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY-A 125
           E ++LR       I +L        +     +++  +  +  L   +++        +  
Sbjct: 88  EAIELREAGITVPILILGYTSVAAAEYAIQYDVMMTVYRIEDLQGINEIAQHLQKKAHIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 148 IKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVT 237
           ++  K  GI  S    ++S+G +   N    + R GI +YG        H    +Q  ++
Sbjct: 208 VNTAKELGIHISYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHAVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  ++ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS----GTT 353
           G   I G  VP++G++ MD  M D+T ++ ++VGD +  +G   + +          GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVTKAMPVQVGDEVVFYGKQGEEEIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|223986552|ref|ZP_03636550.1| hypothetical protein HOLDEFILI_03866 [Holdemania filiformis DSM
           12042]
 gi|223961492|gb|EEF66006.1| hypothetical protein HOLDEFILI_03866 [Holdemania filiformis DSM
           12042]
          Length = 371

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 170/367 (46%), Gaps = 30/367 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL  +K N   +   + + +  AV+K N YG G   +A A   AG     V+S++E 
Sbjct: 8   VEVDLDQIKENIRWLRRQT-DRQFIAVIKANGYGAGDGPVARAALEAGAAMLAVSSLDEA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA-L 126
           + LR     A + +L  + P Q +++   +L +P +S    L +  +L+   V      L
Sbjct: 67  LSLRYQGITAPVLILGVVDPSQAELLLRYDLAVPAVS----LDWVKELVQIPVRGLRVHL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF---- 182
           +VDTG +R+G    + L        +    +  I +H AC+D+P + +   Q  RF    
Sbjct: 123 KVDTGMHRIGTGNLDELQAMLTLLQENGALVEGIFTHFACSDNPDNGMTDDQAARFEHIV 182

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           R L + ++ + +S  +S   +  P       R G++++G T       P    V+  +R+
Sbjct: 183 RALDTPFRWVHSS--NSDAAVHYPKAPGNAVRCGLAMFGVTSYATALKP---CVSLYSRL 237

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + ++   AG+ V YG      ++  I    IGYADG+         +H      G + +I
Sbjct: 238 VYVKALPAGQPVGYGATYTTQKEEWIGTLPIGYADGW-------IRKHQ-----GRQCWI 285

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           +G     +G+I MD  M  +  +    VG  +++FGP + L+ VA   GT  Y++L  + 
Sbjct: 286 EGETGDFVGRICMDQAMIRLPHAFP--VGTKVELFGPHLPLEQVARELGTIPYEVLTLLS 343

Query: 363 TRYAKFY 369
            R AK Y
Sbjct: 344 DRLAKVY 350


>gi|194334745|ref|YP_002016605.1| alanine racemase [Prosthecochloris aestuarii DSM 271]
 gi|194312563|gb|ACF46958.1| alanine racemase [Prosthecochloris aestuarii DSM 271]
          Length = 386

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 162/384 (42%), Gaps = 59/384 (15%)

Query: 16  LKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           L  N   +  L G  R    VVK NAYG     IA  L   GV DF V +++E ++LR  
Sbjct: 31  LACNVKKIRDLIGKERKIMGVVKANAYGHDAPYIAGCLEKLGVSDFGVANIDEALQLR-- 88

Query: 75  TPQARIFVLYGIHPGQEKIIFDTNLI-----PVISSVPQLTFYSKLMSCG---VSHPYA- 125
                          Q K I D + I     P+ S +P    ++  M+       H  A 
Sbjct: 89  ---------------QTKAICDNSRILAFCSPLDSHIPFYLRHNVTMTVTDFRTMHAAAA 133

Query: 126 ------------LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                       ++VDTG  RLGL  ++A++   +       QL  + +H A     S  
Sbjct: 134 AAKAANRLLNVHVKVDTGMGRLGLPPEKAMELLSSIEENDHLQLEGVYTHFA-QSTISDD 192

Query: 174 VNSVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYG-GTDKIN 227
               Q + FR L S +     + +    A S  I+   N H  + RPGI LYG   D   
Sbjct: 193 FTRRQTDCFRHLCSEFEHRFRRSVIKHAAGSGAIICQKNAHLDMVRPGIMLYGYPPDSTT 252

Query: 228 KSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              P ++ V+  +A+II I++   G  +SY           IA  + GYADGY   LS  
Sbjct: 253 TIGPELKPVMQFQAKIIFIKEVAPGTSISYNRTWIAPEKRTIATISAGYADGYHRRLS-- 310

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDD 345
              +  SV + G+ +      P  G +TMD TM D+ ++    VGD   +FG D     D
Sbjct: 311 ---NRSSVTINGRSY------PQAGTVTMDQTMVDLGNASRAAVGDTAVLFGWDGPSAAD 361

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  +GT +Y+LL  +  R  + +
Sbjct: 362 LADMAGTISYELLCAVSARVTRVF 385


>gi|52081594|ref|YP_080385.1| putative alanine racemase [Bacillus licheniformis ATCC 14580]
 gi|52786974|ref|YP_092803.1| YncD [Bacillus licheniformis ATCC 14580]
 gi|319647506|ref|ZP_08001726.1| alanine racemase [Bacillus sp. BT1B_CT2]
 gi|52004805|gb|AAU24747.1| putative alanine racemase [Bacillus licheniformis ATCC 14580]
 gi|52349476|gb|AAU42110.1| YncD [Bacillus licheniformis ATCC 14580]
 gi|317390354|gb|EFV71161.1| alanine racemase [Bacillus sp. BT1B_CT2]
          Length = 393

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 180/393 (45%), Gaps = 57/393 (14%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L A+K N  +    +   ++  AVVK NAYG G  ++A      G  +  V SVEE
Sbjct: 10  VEVNLDAIKKNLRAFRRHIPKKSKIMAVVKANAYGHGSVEVARHALEHGASELAVASVEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHP---GQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSH 122
            V LR    +A I VL G  P    +E   ++ +L     S  Q+ +  +        + 
Sbjct: 70  AVVLRKAGIKAPILVL-GFTPLSCVKEAAAWNISL-----SAFQVDWIKEANEILENEAD 123

Query: 123 PYAL----QVDTGFNRLG-------LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
           P  L     VDTG  RLG       L++ EAL  + N       +   I +H + AD+P 
Sbjct: 124 PNRLAVHINVDTGMGRLGVRTKEKLLAIVEALTASENL------EWEGIFTHFSTADEPD 177

Query: 172 SHVNSVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTD 224
           + +  +Q E+F + +       +K     + +++  +  P +   + R GI +YG   +D
Sbjct: 178 TELTMIQHEKFISFLRFLKEQGFKLPTVHMNNTAAAIAFPEFSADMIRLGIGMYGLYPSD 237

Query: 225 KINKSHPMQTV--VTAEARIILIRKALAG-ELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
            I + + ++ V  ++ +ARI  ++  L     VSYG      R  +IA   +GYADGY  
Sbjct: 238 YIRQLNLVKLVPALSLKARIAYVKTMLTEPRTVSYGATYVAERGEVIATIPVGYADGYSR 297

Query: 282 TLSGLDSEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDI---TDSLSIEVGDYIQI 336
            LS              +GFI  +G  VP+ G++TMDM M  +         EV  Y + 
Sbjct: 298 ELS-------------NRGFILHRGRRVPVAGRVTMDMIMVSLGEGEGKQGEEVVIYGRQ 344

Query: 337 FGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            G +I +D++A    T NY+++  I  R  +FY
Sbjct: 345 KGAEISVDEIAEMLDTINYEVVSTISWRVPRFY 377


>gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
 gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
          Length = 821

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 162/374 (43%), Gaps = 31/374 (8%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N  +  N L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRNKLKPETKIVCMVKASAYGAGSFEIAKTLEDQRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-PYA 125
           G  LR     + I ++        K +FD  L P + S   L    K     GVS+ P  
Sbjct: 523 GADLRKAGINSSIIIM-NPEITAFKTMFDYRLEPEVYSFHLLEELIKAAEREGVSNFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR- 183
           +++DTG +RLG +  E          +       + SHL  +D +        Q+E F  
Sbjct: 582 IKIDTGMHRLGFAPSEIPQLVQRLQKQSAVIPRSVFSHLVGSDAERFDAFTRHQIETFEA 641

Query: 184 ---TLISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
              TL   +K  I   + +++GI   P   F + R GI LYG     NK   +  V T +
Sbjct: 642 ASTTLQEGFKHKIIRHICNTAGIERYPGAQFDMVRLGIGLYGVDPFTNKM--LHNVTTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I +  A E V Y  +  LTRDS IA   IGYADG    L              G 
Sbjct: 700 TTILQIHEVPADETVGYSRKGVLTRDSRIAAIPIGYADGLNRHL--------------GN 745

Query: 300 G----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G     + G   P +G I MD+ M D+TD +  + GD   IFG D+ +  ++    T  Y
Sbjct: 746 GHAYCLVNGQKAPYVGNICMDVCMIDVTD-IDCKEGDKAIIFGDDLPVTVLSDILETIPY 804

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +  R  + Y
Sbjct: 805 EILTSVSNRVKRVY 818


>gi|303232760|ref|ZP_07319445.1| alanine racemase [Atopobium vaginae PB189-T1-4]
 gi|302481246|gb|EFL44321.1| alanine racemase [Atopobium vaginae PB189-T1-4]
          Length = 386

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 184/393 (46%), Gaps = 53/393 (13%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L A+++N  ++ +L +   +  A+VK +AYG G    A A+ +AG Q F V +V+E
Sbjct: 13  MEVNLAAIRHNVRTIKSLMAPTCKLMAIVKADAYGHGAGVCARAMASAGAQQFGVATVQE 72

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---- 122
            ++LR  +  A+  VL    P +   ++ + +++P ++S   +  Y +   C ++H    
Sbjct: 73  ALELR-QSGIAQPIVLLSEPPVETIDLLLENDIMPGVTSSEFVLAYGE---CAIAHDMVG 128

Query: 123 PYALQVDTGFNRLGLSLQEALDFTH-NSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            Y L +DTG  R+G+  ++A++F     F++ +   +   +H A AD         Q++R
Sbjct: 129 KYHLALDTGMTRIGIPAEDAVEFRRLVDFHRGI-VCAGTYTHFATADTIGDWDFRRQVQR 187

Query: 182 FRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSH 230
           F   I        Y GI     +++  +L P+  F + R GI+LYG      T ++ +  
Sbjct: 188 FTDAIRALHEAKLYPGI-VHCDNTAATMLYPDIQFDMCRVGIALYGIHPAESTVELAELE 246

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSG-LDS 288
           P  ++    ARI  +     G+ VSYG   ++    + IA   IGYADG   +LSG +D 
Sbjct: 247 PAMSI---RARITRVANPRIGDGVSYGMTYRVNTPYMQIATIPIGYADGLSRSLSGEMDV 303

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMF-----DITDSL---SIEVGDYIQIFGPD 340
                        + G     +G+I MD  MF      +T S     + VGD + I G D
Sbjct: 304 ------------LVHGRRARQVGRICMDQCMFAYPLRSMTSSTMAPELAVGDVVTIMGSD 351

Query: 341 ----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
               I  D++     T  Y++L     R  + Y
Sbjct: 352 KDEYISADEIGQLRHTIAYEVLCNFSARLERVY 384


>gi|20140680|sp|Q93A44|VANTE_ENTFA RecName: Full=Amino-acid racemase; AltName: Full=Vancomycin E-type
           resistance protein VanT
 gi|16612081|gb|AAL27444.1|AF430807_9 VanTE [Enterococcus faecalis]
          Length = 702

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 165/376 (43%), Gaps = 47/376 (12%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I  +A+ +N + +  +   N     VVK NAYG G  ++A  L   G+  F V ++EE 
Sbjct: 347 EISASAIHHNINEIRKIIPKNTNIMGVVKANAYGCGMVEVAYELEKIGISFFCVATIEEA 406

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPYA 125
           + LR    Q  I +L   HP +   I   NLI  I S      L      + C       
Sbjct: 407 IALRKSGNQGDILILGYTHPNRINDIKKYNLIQSIVSEEHGKVLNLKKIPIRC------H 460

Query: 126 LQVDTGFNRLGLS-----LQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSV 177
           LQVDTG +RLG++     +Q+   F+    N K+     I SHL  +D     S    + 
Sbjct: 461 LQVDTGMHRLGVTPNVTIIQQMYLFS----NLKIEG---IYSHLGSSDSLEQESIARTNT 513

Query: 178 QLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP- 231
           Q+  F  ++S  + +  S     + SS GIL  P   F   R GI  YG     N     
Sbjct: 514 QIFLFNNILSDLEQMGISYGYTHIQSSYGILNYPELSFDFVRIGILCYGFLSDYNSPTKI 573

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +Q +V  +A +I  R   AGE V YG   K+ + + I V +IGYADG P  LS    
Sbjct: 574 PIDLQPIVKVKASLITERIVEAGEYVGYGLGAKVEKRTRIGVVSIGYADGIPRALSNAKL 633

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
                         KG  +  +G I MDM + D+++   I + D + +  P+I    +A 
Sbjct: 634 TLE----------FKGQSIKQIGNICMDMMLVDLSEVEDISLNDELIVL-PNI--SKIAD 680

Query: 349 ASGTTNYDLLVRIGTR 364
              T   +LL R+G+R
Sbjct: 681 EEQTITNELLSRLGSR 696


>gi|253576997|ref|ZP_04854320.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843607|gb|EES71632.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 392

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 169/386 (43%), Gaps = 44/386 (11%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL++N+  +     + +  A VK NAYG G   +A  L   G     V  ++E +
Sbjct: 11  EIDLDALRSNFEELRRRQQDMKMLACVKANAYGHGAVPVAKELEQIGADYLSVAFLDEAL 70

Query: 70  KLRLYTPQARIFVL-----YGIHPGQEKI----IFDTNLIPVISSVPQLTFYSKLMSCGV 120
           +LR    Q  I VL     +G+    E      +F   ++  I ++    F  KL     
Sbjct: 71  ELRKAGIQLPILVLGYTPPHGVRTAWEHDVTLNVFSNEVLEAIEALNPAEFPHKL----- 125

Query: 121 SHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                +++D+G  R+G L   EA+ F   +      ++  + +H A AD+        Q 
Sbjct: 126 --KVHIKIDSGMGRVGLLPGDEAVAFVRKAMQVPHVEVEGLFTHYATADEEDKSYTLEQY 183

Query: 180 ERFRTLI----SHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYG--GTDKINKSH-P 231
            RF+ ++     H   I      +S I +  P    Q+ R GI+LYG   +D++ +    
Sbjct: 184 RRFQGVVEALREHNIRIPIIHTGNSAIAIDMPELSVQMVRIGIALYGLYPSDEVRRDQVK 243

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  V++ +   + ++   A   +SYG +    ++  IA   IGYADGY   L+G      
Sbjct: 244 LTPVLSLKTETVRVKTLPAHSAISYGARYITEQEERIATLPIGYADGYSRMLNG------ 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIF----GPDIKL 343
                  +  I+G  VP+ G I MD  M  +     ++  I+ G+ + +     G +I  
Sbjct: 298 -----KAQVLIRGRRVPVTGVICMDQCMVSLQALAEEAEEIQAGEEVVLIGRQAGEEITA 352

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
            ++A A GT +Y+L+  +  R  + Y
Sbjct: 353 GELASAMGTIHYELICMLAHRVPRVY 378


>gi|326803963|ref|YP_004321781.1| alanine racemase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650608|gb|AEA00791.1| alanine racemase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 385

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 167/375 (44%), Gaps = 48/375 (12%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83
           +A S  A+T AV+K +AYG G   IA AL  AG + F V   +E + LR    QA I +L
Sbjct: 27  HAFSPKAKTYAVIKADAYGHGSIPIAKALTEAGAEGFCVAVTDEALALREAGIQAPILIL 86

Query: 84  YGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHP---YALQVDTGFNRLGL-- 137
            GI   ++  +   + I + ISS+  L             P     L+VD+G  R+GL  
Sbjct: 87  -GITEVEDAWLHAQHDISLTISSLAWLKAAYAQRPTDQEFPPLKLHLKVDSGMGRIGLRD 145

Query: 138 --SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-----SVQLERFRTLI---- 186
             + QE +D+   S +++  +L  I +H A AD  S  V      + Q +RF   I    
Sbjct: 146 SQAGQEIIDYI--SDHQEAFELDGIFTHYATAD--SDQVKDQDYVAKQSQRFEDFIQALD 201

Query: 187 -SHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYG----GTD-KINKSHPMQTVVTAE 239
            SH         S++ + L  P     + R GI LYG    G D  + +   ++   T E
Sbjct: 202 FSHLNKKPLIHRSNTALALWYPEKTMDIVRLGIGLYGESPAGPDFALPEDMALKPAFTLE 261

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ ++K  AGE +SYG       D  I    IGYADG P + SG +            
Sbjct: 262 SELVYVKKLQAGESISYGATYTTESDQWIGTLPIGYADGLPRSSSGFEV----------- 310

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTN 354
             I GY  PI+G++ MD  M  +   L +   + + + G D     I   D+AL + T  
Sbjct: 311 -LIAGYKCPIVGRVCMDQCMVALPKELPLH--EKVTLIGSDDQGNHISAWDLALYNHTIA 367

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   I  R  + Y
Sbjct: 368 YEITCGISERVPRTY 382


>gi|216264434|ref|ZP_03436426.1| alanine racemase [Borrelia burgdorferi 156a]
 gi|215980907|gb|EEC21714.1| alanine racemase [Borrelia burgdorferi 156a]
          Length = 372

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 156/352 (44%), Gaps = 28/352 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 32  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 91

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 92  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 149

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 150 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 207

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE +S
Sbjct: 208 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGEKIS 267

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 268 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 316

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++ + +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG +Y K
Sbjct: 317 NLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG-KYEK 367


>gi|294101224|ref|YP_003553082.1| alanine racemase [Aminobacterium colombiense DSM 12261]
 gi|293616204|gb|ADE56358.1| alanine racemase [Aminobacterium colombiense DSM 12261]
          Length = 374

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 166/383 (43%), Gaps = 39/383 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL++DL  ++NN+ ++    G + R   VVK +AY LG +KI   L + GV  F V + +
Sbjct: 7   RLEVDLEKVRNNYRAIRKHVGESVRIFGVVKGDAYNLGADKIGRVLADMGVDFFAVATGD 66

Query: 67  EGVKLRLYTPQARIFVL----YGIHP-----GQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           E + LR    ++ I VL    YGI       G    I D  +   +S         +L  
Sbjct: 67  EAISLRESGIESPILVLGPSPYGIAEEYVRLGIRAAINDKGIAKALSDAS-----VRLQK 121

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
               H   +++D+G  R+G    EA D      +     L  I +H A +D         
Sbjct: 122 PAYGH---VKIDSGMGRIGFFPHEAADAVEEISHLPGLNLEGIFTHFAISDARDLTYTYE 178

Query: 178 QLERFRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           Q   F  +I     +GI  S+    +S   L  P +     RPG  + G   + ++ +S 
Sbjct: 179 QHSTFVKVIGELEKRGITFSIKHCCNSGATLALPQFVMDGVRPGQLVVGMYPSKEVVRSI 238

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V   +  I  IR   AG+ +SYG   + T D  IAV  +GY DGY   LSG  +E 
Sbjct: 239 AIEPVFEFKTAISAIRTVPAGKKLSYGLTYETTADERIAVIPVGYHDGYSRELSGKGTEV 298

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                      I G   PI+G+I MD  + D++   + ++GD + + G      I  D++
Sbjct: 299 ----------LIHGKRCPIVGRICMDQALVDVSVLQNPQIGDEVVLLGKQGEETITGDEI 348

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A   GT    L   IG R  + Y
Sbjct: 349 ADKIGTIFTTLPNMIGKRVPRVY 371


>gi|146743652|gb|ABQ43057.1| alanine racemase [Borrelia bissettii]
          Length = 366

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 156/354 (44%), Gaps = 27/354 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           GN    A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 26  GNKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILIYIKVD 85

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P ++    L    K   C +        L++D G NR G+ +  AL+
Sbjct: 86  KKEIKNLIKLELVPFVADFEYLFLIEK--ECALQKNKLKVHLKIDIGMNRYGIKIDSALE 143

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEASLA--SSS 200
                 N K  +L  + SHL   +D  +     Q+E+F   +     K I       S+S
Sbjct: 144 IATYIQNSKFLELEGVCSHLPSTEDFKT--TQKQIEQFLFFLEKLKQKNINPKFVHISNS 201

Query: 201 GILLGPNY--HFQLTRPGISLYG-GTDKINKSHPM--QTVVTAEARIILIRKALAGELVS 255
           G ++       F + RPG+ LYG      NK   +  + V++  +++I I+    GE +S
Sbjct: 202 GHIIDYKLSSQFNMIRPGLILYGYCPSSKNKKLALNFKPVLSLFSKVIFIKNVKKGEKIS 261

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 262 YSGTFQAKEDIKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 310

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++T+ +I   L ++ G  ++I    + +D+++  S  +NY+LL  IG    K Y
Sbjct: 311 NLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSNYELLCNIGKYEKKKY 364


>gi|261418553|ref|YP_003252235.1| alanine racemase [Geobacillus sp. Y412MC61]
 gi|319765367|ref|YP_004130868.1| alanine racemase [Geobacillus sp. Y412MC52]
 gi|261375010|gb|ACX77753.1| alanine racemase [Geobacillus sp. Y412MC61]
 gi|317110233|gb|ADU92725.1| alanine racemase [Geobacillus sp. Y412MC52]
          Length = 384

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 169/386 (43%), Gaps = 39/386 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +EF R   ++IDL A+ +N  ++   L G  +  AVVK NAYG G  ++A     AG   
Sbjct: 2   DEFHRDTWVEIDLDAIYDNVANLRRFLPGGTQIMAVVKANAYGHGDAQVAATALEAGASR 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR     A I VL    P    +  +  +   +     L   S L +  
Sbjct: 62  LAVAFLDEALALRKKGIDAPILVLGASRPEDVALAAEHRIALTVFRSDWLEKASSLYNGS 121

Query: 120 VSHPYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + L++DTG  RLG+  +E      AL   H  F      L  + +H A AD+ ++ 
Sbjct: 122 TPIHFHLKMDTGMGRLGVKDEEETKRIAALIDRHPPF-----VLEGVYTHFATADEVNTD 176

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
             S Q  RF  ++            A+S+  L   +  F + R GIS+YG   +  I   
Sbjct: 177 YFSYQYARFLHMLDWLPSRPPLVHCANSAAALRFSDRAFNMVRFGISMYGLAPSPDIKPL 236

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++   +  +R++ ++K   GE VSYG       +  I    IGYADG+   L  L 
Sbjct: 237 LPYELKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGW---LRRLQ 293

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             H   V +GG+        PI+G+I MD  M  + + L   VG  + + G      I +
Sbjct: 294 HFH---VLVGGQ------RAPIVGRICMDQCMIRLPEPLP--VGTKVTLIGRQGDEVISI 342

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DDVA   GT NY++   I  R  + +
Sbjct: 343 DDVARHLGTINYEVPCTISYRVPRIF 368


>gi|153006329|ref|YP_001380654.1| alanine racemase [Anaeromyxobacter sp. Fw109-5]
 gi|152029902|gb|ABS27670.1| alanine racemase [Anaeromyxobacter sp. Fw109-5]
          Length = 393

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 164/375 (43%), Gaps = 33/375 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL AL +N   + A +  ++  AVVK NAYG G   +  A   AG     V  V+E  
Sbjct: 16  EIDLDALAHNVRLLAARAAPSKLYAVVKANAYGHGAIAVGRAALAAGASALAVVCVDEAE 75

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPYAL 126
           +LR     A I V+    P     +   +L P ++S      L   +K    GV     L
Sbjct: 76  ELRRGGVDAPILVIGYTPPADAARVVALDLRPTVASADVAEALAVAAKRR--GVPVAVHL 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++TG NR GL+    +            ++  + +H A A++        Q +  R + 
Sbjct: 134 ELETGLNRHGLTPDALVALATRLRAMPELRVEGLFTHFAAAEEGDQRFTRRQFDVLRDVS 193

Query: 187 SHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHPMQTVVTA 238
           +    I E   A+S+ +LL      ++ R G+S+YG       GTD       ++ V++ 
Sbjct: 194 ARLSWIPERHCAASASLLLDHEMALEVVRAGLSMYGYRPAPWCGTDA-----DLRPVLSL 248

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            AR+  + +   G  V YG      R S +A+   GYADGY  +L   +  H        
Sbjct: 249 RARVARVLEVERGATVGYGRTWAAARPSRVALVMCGYADGYRRSLG--NRAHL------- 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
              ++G   P++G++ MDM M D+T    +  GD   + G D    +  D++A  + T +
Sbjct: 300 --LVRGRRAPVVGRVAMDMCMVDVTAVPEVRAGDVATLLGRDGEERVDADELASLADTIS 357

Query: 355 YDLLVRIGTRYAKFY 369
           +++L  I  R  + Y
Sbjct: 358 WEILAGITARVPRLY 372


>gi|304440218|ref|ZP_07400108.1| alanine racemase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371267|gb|EFM24883.1| alanine racemase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 403

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 169/359 (47%), Gaps = 32/359 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL  L +N  ++   +S N+   AVVK NAYG G +KI   L   G+  F V +++E
Sbjct: 27  LEVDLDKLIDNIRTIKRNISLNSSIIAVVKANAYGFGIKKIVDTLILEGIDYFAVATLQE 86

Query: 68  GVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            +++R Y    +I +L Y      +K I +   + + +    L          ++    +
Sbjct: 87  ALEIRKYHSDIKIMILGYTDRNLYKKAIENRVELSIYTKDDVLNLEKIASEINLTAQINI 146

Query: 127 QVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            ++TG NR+G        E ++   NS N    ++S   SH A AD  S +    Q ++F
Sbjct: 147 PLETGMNRIGFVEDDKFIENMETIKNSKNI---EVSGAFSHFAAADTNSCYTRK-QFDKF 202

Query: 183 --RTLISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-HPMQTVV 236
              T I    GIE     +++S  I+    ++    RPGI +YG ++ + K    ++ + 
Sbjct: 203 IRMTRIIENIGIEIPYKHISNSMAIMNFKEFNLDAVRPGIIMYGSSEGLKKEGFDLKYIG 262

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +A+I  I+     E VSYG      RD+ +A   IGYADG    LS     +   V +
Sbjct: 263 SLKAKISNIKTIKKDEKVSYGLTYTCDRDTKVATLPIGYADGVVRILS-----NKIDVIV 317

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
            GK        P++G+I MD  M D+TD ++ ++     I G D    I +++VA  +G
Sbjct: 318 NGK------RCPVIGRICMDQMMVDVTD-VNCDMDTICTIIGMDGDEEITIEEVAGLAG 369


>gi|305665877|ref|YP_003862164.1| alanine racemase [Maribacter sp. HTCC2170]
 gi|88710652|gb|EAR02884.1| alanine racemase [Maribacter sp. HTCC2170]
          Length = 380

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 175/374 (46%), Gaps = 29/374 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL  L++N++ + + L+ + +  AVVK  AYG    KIA  L   GV  F V  V E
Sbjct: 21  LEIDLNNLEHNYNYLRSKLNSDTKFLAVVKAYAYGSDAVKIALKLEAIGVDYFAVAYVNE 80

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL--TFYSKLMSCGVS-HPY 124
           GV LR+   +  I VL+      +K+I +  L P + S P++   F       G   +P 
Sbjct: 81  GVALRMGGVKKSILVLHPQSVNFDKLI-EHCLEPSLYS-PKILREFLEATKRNGQKDYPV 138

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSV-QLERF 182
            ++ +TG NRLG   +  +D+  +   ++   +++ I SHLA  +D +    ++ Q++ F
Sbjct: 139 HIKFNTGLNRLGF-WENDVDYIMDQLKERRDIRITSIFSHLAATEDSTEKQFTLKQIDTF 197

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
             ++S ++          + ++SGI+  P  +F + R GI LYG  +       ++ + T
Sbjct: 198 TKIVSDFEEKLGYSPLKHILNTSGIINYPEANFDMVRSGIGLYGFANDEEIDSQLKPIAT 257

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I  I K    E V Y          + A   +G+ADG                +  
Sbjct: 258 LKTIISQIHKIEPNESVGYNRAYTSEGYRVTATLPLGHADGIGRQ------------YGK 305

Query: 298 GKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           GK F  + G + PI+G + MDM M DIT  +  + GD + IFG +      A  + T +Y
Sbjct: 306 GKTFVSVNGTLAPIIGNVCMDMIMVDIT-GIDCKEGDEVIIFGGNPTAHSFAATANTISY 364

Query: 356 DLLVRIGTRYAKFY 369
           +L+  I  R  + +
Sbjct: 365 ELITGISQRIKRVF 378


>gi|187918034|ref|YP_001883597.1| alanine racemase [Borrelia hermsii DAH]
 gi|119860882|gb|AAX16677.1| alanine racemase [Borrelia hermsii DAH]
          Length = 366

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 160/371 (43%), Gaps = 27/371 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L  L +N  S+          A +K +AYG G  +    L   GV  F +  +++ +K
Sbjct: 9   INLQNLNHNLTSIKNHIQKRELVATLKSDAYGHGLIQTFKFLKEKGVNYFGLFWIDDALK 68

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---LQ 127
           L+       I +         K +   N+ P ++    L+   +   C   +      L+
Sbjct: 69  LKKIDKNVNILLYINTDKNAIKNLVKFNITPFVADSQYLSLIEQ--ECRKQNKKIKAHLK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VD G NR G+ +++AL+      N K  +   I +HL   ++  + +   Q+E+F   I+
Sbjct: 127 VDVGMNRYGIKIEDALNLAIQIQNSKSIEFEGICTHLPTTEN--TKITQTQIEKFVYFIN 184

Query: 188 HYK--GIEASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
             K   I      +S      NY     F + RPG+ LYG     +  N +  ++ V+  
Sbjct: 185 KLKSKNINPKFIHASNSEHIANYKISEKFNMVRPGLILYGYHPNPNISNNNLQLKPVLNL 244

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ++II ++    GE +SY G      D  I +  +GY DG P   S     +   +    
Sbjct: 245 YSKIIFLKNIKKGEQISYSGLFTAKEDMQIGLIPVGYFDGIPQNTSN----NFYCIIRDR 300

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           K FIKG       KI M++++ +I   L I +G+ ++I    + LD ++  SG + Y++L
Sbjct: 301 KCFIKG-------KICMNISIIEIPKDLKINIGEKVEIISERLSLDILSKESGISKYEIL 353

Query: 359 VRIGTRYAKFY 369
             IG    K Y
Sbjct: 354 CSIGKHEKKKY 364


>gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6]
 gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6]
          Length = 845

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 165/374 (44%), Gaps = 31/374 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+IDL AL  N   + AL+G     AV+K +AYG G  + A A   AG +   V ++ E 
Sbjct: 485 LRIDLDALAANVRHLRALAG-VPLMAVLKADAYGHGAIRAARAALGAGAEALAVATLGEA 543

Query: 69  VKLRLYTPQARIFVLYGIHPGQE----KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
             LR +   ARI +L    P Q     ++  D  L    S+   L       S G     
Sbjct: 544 RTLRAHGIAARILLLGYTPPWQADETVRLGLDCTLFDHDSA---LALSRAAQSAGRPVRV 600

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++VDTG  RLGL   E   F          ++  + +H A AD+        QLERF  
Sbjct: 601 HIKVDTGMARLGLVHSEVGPFLTVLHQLPGLEIHGLYTHFASADEADLRAAQAQLERFNH 660

Query: 185 LISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVT 237
           L++     G+   L   A+S+  L  P   F + RPGI+ YG     +   P   + V++
Sbjct: 661 LLADLVAAGLRPPLVHAANSAATLRLPAARFDMVRPGIACYGLNPSPHTPLPPGFRPVLS 720

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  +R+  AG  VSYGG    T+ + IA    GYADG            +P     
Sbjct: 721 FHSEVAQVRELPAGTPVSYGGTYVTTQPTRIATIPAGYADGI---------RRAPP---W 768

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   P++G+I MD TM D++    +  GD + + G     +I  D+VA   GT 
Sbjct: 769 QSVLIAGQRAPVVGRICMDYTMVDVSHIPGVRRGDAVVLIGRQGADEISADEVAEWLGTI 828

Query: 354 NYDLLVRIGTRYAK 367
           +Y++L  I  R  +
Sbjct: 829 SYEVLTSILPRVPR 842


>gi|319648697|ref|ZP_08002908.1| alanine racemase [Bacillus sp. BT1B_CT2]
 gi|317389116|gb|EFV69932.1| alanine racemase [Bacillus sp. BT1B_CT2]
          Length = 398

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 163/375 (43%), Gaps = 31/375 (8%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDLTALK N  +M    G +    AVVK NAYG G  ++A A    G     V  ++E 
Sbjct: 22  EIDLTALKENVRNMKRHIGEHVHLMAVVKANAYGHGDAQVAKAALAEGASILAVALLDEA 81

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYALQ 127
           + LR    +  I VL  + P    I  +  +I    SV  L      L        Y L+
Sbjct: 82  LSLRAQGIEEPILVLGAVPPEYASIAAEKRIIVTGYSVGWLKDVLGFLNEAEAPLEYHLK 141

Query: 128 VDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +DTG  RLG   +E +         + KL   + + +H A AD+  +   ++QL+RF+ L
Sbjct: 142 IDTGMGRLGCKTEEEIKEMMEMTESSDKL-NCTGVFTHFATADEKDTDYFNMQLDRFKEL 200

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQL---TRPGISLYG--GTDKINKSHP--MQTVVTA 238
           IS    ++  +  SS    G  +  QL    R GI +YG   + +I    P  ++ V + 
Sbjct: 201 ISPLP-LDRLMVHSSNSAAGLRFREQLFNAVRFGIGMYGLAPSTEIKDELPFRLREVFSL 259

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              +  ++K   GE VSYG      RD  I    +GYADG+   L+G +           
Sbjct: 260 HTELTHVKKIKKGESVSYGATYTAQRDEWIGTVPVGYADGWLRRLAGTEV---------- 309

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
              I G    I G+I MD  M  + +     VG  + + G      I +D++A    T N
Sbjct: 310 --LIDGKRQKIAGRICMDQFMISLAEEYP--VGTKVTLIGKQKDEWISVDEIAQNLQTIN 365

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   I +R  + +
Sbjct: 366 YEITCMISSRVPRMF 380


>gi|223043945|ref|ZP_03613986.1| alanine racemase [Staphylococcus capitis SK14]
 gi|222442660|gb|EEE48764.1| alanine racemase [Staphylococcus capitis SK14]
          Length = 382

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 183/390 (46%), Gaps = 46/390 (11%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L ++L A+ NN+ + N L  N    +V+K N+YGLG  K+A  L   G   
Sbjct: 2   SEKFYRSTYLNVNLDAILNNYQTFNQLHHNKTVISVIKANSYGLGSVKVAHHLMEHGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           F V +++E ++LR++   A++ VL G+ P ++  I       V  +VP   +  + + + 
Sbjct: 62  FAVATLDEAIELRMHGIDAKLLVL-GVIPTKD--ISKAIQHRVALTVPSKAWLKEAIRNI 118

Query: 119 GVSHPYAL----QVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-SLIISHLACADDPSSH 173
              +   L    ++D+G  RLG+   E      +  NKK   +   + +H A AD+P   
Sbjct: 119 PEKNEKKLWLHAKIDSGMGRLGMKDVEEYKDVVDIINKKDDLVFEGVFTHFASADEPGDS 178

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG------GTDK 225
           +N  Q E F+ +++  +      S  S++ +L+   +     R GISLYG        D 
Sbjct: 179 MNE-QYEFFKDIVNQVEKPNYIHSQNSAASLLMDGQF-CNAIRLGISLYGYYPSQYVRDN 236

Query: 226 INKSH--PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           + K H  P   +VT    I+ ++    GE VSYG      ++  IA+  +GYADGY   +
Sbjct: 237 V-KVHLRPSAQLVT---EIVQVKSLKVGETVSYGRTFTADKEMKIAILPVGYADGYLRAM 292

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-- 341
            G         ++     + G+   ++G++ MD T+  + D   +++GD + +    I  
Sbjct: 293 QG--------AYVN----VNGHQCEVVGRVCMDQTIVSVPD--DVKMGDKVILMDNHIDS 338

Query: 342 --KLDDVALASGTTNYDLLVRIGTRYAKFY 369
              ++ +A    T NY++L  +  R  + Y
Sbjct: 339 PQSVESLAEKQHTINYEVLCNLSKRLPRIY 368


>gi|221217500|ref|ZP_03588971.1| alanine racemase [Borrelia burgdorferi 72a]
 gi|225549860|ref|ZP_03770822.1| alanine racemase [Borrelia burgdorferi 118a]
 gi|221192778|gb|EEE18994.1| alanine racemase [Borrelia burgdorferi 72a]
 gi|225369551|gb|EEG99002.1| alanine racemase [Borrelia burgdorferi 118a]
          Length = 372

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 156/352 (44%), Gaps = 28/352 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 32  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 91

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 92  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 149

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 150 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 207

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE +S
Sbjct: 208 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGEKIS 267

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 268 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 316

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  I  +Y K
Sbjct: 317 NLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIA-KYEK 367


>gi|213962105|ref|ZP_03390369.1| alanine racemase [Capnocytophaga sputigena Capno]
 gi|213955111|gb|EEB66429.1| alanine racemase [Capnocytophaga sputigena Capno]
          Length = 369

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 169/380 (44%), Gaps = 32/380 (8%)

Query: 5   EFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-V 62
           E   L+I+LTAL+ N H + N L       AVVK ++YG     IA  L   G+ ++F V
Sbjct: 4   EETTLEINLTALEKNIHYLKNRLKPTTLFLAVVKASSYGNNSVAIASHLQKKGLVNYFAV 63

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS--VPQLTF-YSKLMSCG 119
               EG+ LR       I VL+   P     I   NL P + S  + QL   Y+K+    
Sbjct: 64  AYTSEGIALRKAGITLPILVLHP-QPINFNDIVKYNLEPTLYSQRIAQLFLDYAKIQQLA 122

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            ++P  L+ +TG NRLG  L E  +      N    ++    SHLA ++D +        
Sbjct: 123 -NYPVHLKCNTGLNRLGFDLSEIEETLALLKNNTTVKVKTAYSHLAASEDMNE--KEFTE 179

Query: 180 ERFRTLISHYKGIEASL--------ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            +  T I+  + I  +          ++SGIL  P   F + R GI +YG  + +     
Sbjct: 180 NQINTFIAFQEKINKTFTHKVIYHQCNTSGILNYPQAQFDMVRCGIGMYGFANDVKLQQY 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  ++T ++ I  +     GE + Y         +  A   +G+ADG             
Sbjct: 240 LTPIMTLKSVISQLHTLQIGESLGYNRGYIADHITRTATIPVGHADGI------------ 287

Query: 292 PSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
             ++  GKG  FI G    I+G + MDM + D+T+ +S + GD + +F      + +A +
Sbjct: 288 NRIYGKGKGFVFINGKKASIIGNVCMDMILVDVTE-ISCQEGDEVIVFDKTHTAETLAES 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +GT +Y+L+  +  R  + Y
Sbjct: 347 AGTISYELITSMAHRIKRIY 366


>gi|312866452|ref|ZP_07726670.1| alanine racemase [Streptococcus downei F0415]
 gi|311098146|gb|EFQ56372.1| alanine racemase [Streptococcus downei F0415]
          Length = 367

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 171/381 (44%), Gaps = 47/381 (12%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           K+DL+A+ +N   + + +  + +T AVVK NAYG G   +A       V  F V++++EG
Sbjct: 12  KVDLSAISSNIKQIQDHVPQSVKTFAVVKANAYGHGAVAVASHTQRL-VDGFCVSNIDEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL---MSCGVSHPYA 125
           ++LR    +  I VL  + PG+  ++ D  L   I+S+  L         +S  + H   
Sbjct: 71  IELRQAGIRKPILVLGVVLPGEVPLVRDYRLTLTIASLEWLELAQAKPLDLSNLLVH--- 127

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           + VD+G  R+G+ SL EA D       +   Q+  I +H A AD+        QL  F+ 
Sbjct: 128 IAVDSGMGRIGVRSLAEANDLIAG-LRQAGCQVKGIFTHFATADEADDRKFQEQLAFFKE 186

Query: 185 LIS---------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPM 232
           L++         H      SL  S GI       F   R G+ +YG      +++  + +
Sbjct: 187 LVAGLDYCPELVHASNSATSLWHSEGI-------FNALRLGLVIYGLNPSGQELSLPYKI 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E  ++ ++K  AG  V YG     +++  I    +GYADG+   + G D     
Sbjct: 240 KPALSLETALVHVKKVPAGADVGYGATYTSSQEEWIGTLPLGYADGWTRDMQGFDV---- 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                    + G   PI+G+++MD     +  S  +  G  + + G +    I   DVA 
Sbjct: 296 --------LVAGQRCPIVGRVSMDQITIRLPQSYPL--GTKVTLIGKNGDQLISATDVAQ 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY++L  +  R  + Y
Sbjct: 346 QRGTINYEVLCLLSDRVPREY 366


>gi|149183253|ref|ZP_01861697.1| alanine racemase [Bacillus sp. SG-1]
 gi|148849049|gb|EDL63255.1| alanine racemase [Bacillus sp. SG-1]
          Length = 394

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 161/379 (42%), Gaps = 37/379 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL  L  N H++   L       AVVK NAYG G  + A    N G     V  ++E
Sbjct: 13  VEIDLDNLYKNVHNIKQHLPEGVTMFAVVKANAYGHGDVQTAHTALNGGAGGLAVAFLDE 72

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
            + LR    +A I VL         +    ++   +     L    + +          +
Sbjct: 73  AISLRENGIEAPILVLGATRAEDAYLAMSHDISLTVFDYAWLESAREYLEKEDGKLNLHI 132

Query: 127 QVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           + DTG  R+G+     LQ+   F      +   QL  + +H A AD+  +     QLE F
Sbjct: 133 KCDTGMGRIGVRNSADLQKVEKFIRQ---ESKFQLEGVFTHFATADELDTEYFERQLEVF 189

Query: 183 RTLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQT 234
             ++S      K I +S  +S+  L  P  HF   R GI++YG +  +        P++ 
Sbjct: 190 ERMLSSLTERPKYIHSS--NSAATLSHPKSHFNAVRAGIAMYGLSPSVEMKAVLPFPLEQ 247

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V +  +RI+ +++  AGE VSYG   +  ++  I    IGYADG+   L G +       
Sbjct: 248 VFSLHSRIVQVKELRAGEKVSYGATYETKKNEWIGTLPIGYADGWLRKLQGQEV------ 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G   PI+G+I MD  M  + +   ++ G  + + G      I +D++A   
Sbjct: 302 ------LVDGKRAPIVGRICMDQCMISLPE--EVQPGTKVTLIGRQDGDFISMDEIAAKL 353

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   I  R  + Y
Sbjct: 354 DTINYEIPCIISNRVPRIY 372


>gi|224532829|ref|ZP_03673444.1| alanine racemase [Borrelia burgdorferi WI91-23]
 gi|224533969|ref|ZP_03674553.1| alanine racemase [Borrelia burgdorferi CA-11.2a]
 gi|224512218|gb|EEF82604.1| alanine racemase [Borrelia burgdorferi WI91-23]
 gi|224512805|gb|EEF83172.1| alanine racemase [Borrelia burgdorferi CA-11.2a]
          Length = 372

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 156/352 (44%), Gaps = 28/352 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 32  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 91

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 92  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 149

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 150 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 207

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++  I+    GE +S
Sbjct: 208 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVTFIKNVKKGEKIS 267

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 268 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 316

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG +Y K
Sbjct: 317 NLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG-KYEK 367


>gi|56418766|ref|YP_146084.1| alanine racemase [Geobacillus kaustophilus HTA426]
 gi|81819823|sp|Q5L3G4|ALR_GEOKA RecName: Full=Alanine racemase
 gi|56378608|dbj|BAD74516.1| alanine racemase [Geobacillus kaustophilus HTA426]
          Length = 384

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 169/386 (43%), Gaps = 39/386 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +EF R   ++IDL A+ +N  ++   L    +  AVVK NAYG G  ++A     AG   
Sbjct: 2   DEFHRDTWVEIDLDAIYDNVANLRRFLPEGTQIMAVVKANAYGHGDAQVAATALEAGASR 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR     A I VL    P    +  +  +   +     L   S L +  
Sbjct: 62  LAVAFLDEALALRKKGIDAPILVLGASRPEDVALAAEHRIALTVFRSDWLEKASSLYNGS 121

Query: 120 VSHPYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + L++DTG  RLG+  +E      AL   H  F      L  + +H A AD+ ++ 
Sbjct: 122 TPIHFHLKMDTGMGRLGVKDEEETKRIAALIDRHPPF-----VLEGVYTHFATADEVNTD 176

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
             S Q  RF  ++            A+S+  L   +  F + R GIS+YG   +  I   
Sbjct: 177 YFSYQYARFLHMLDWLPSRPPLVHCANSAAALRFSDRAFNMVRFGISMYGLAPSPDIKPL 236

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++   +  +R++ ++K   GE VSYG       +  I    IGYADG+   L  L 
Sbjct: 237 LPYELKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGW---LRRLQ 293

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             H   V +GG+        PI+G+I MD  M  + + L   VG  + + G      I +
Sbjct: 294 HFH---VLVGGQ------RAPIVGRICMDQCMIRLPEPLP--VGTKVTLIGRQGDEVISI 342

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DDVA   GT NY++   IG R  + +
Sbjct: 343 DDVARHLGTINYEVPCTIGYRVPRIF 368


>gi|119963624|ref|YP_947004.1| alanine racemase [Arthrobacter aurescens TC1]
 gi|119950483|gb|ABM09394.1| alanine racemase [Arthrobacter aurescens TC1]
          Length = 390

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 174/383 (45%), Gaps = 37/383 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL+A+ +N  ++   +      AVVK NAYG G  ++A     AG        + E + 
Sbjct: 1   MDLSAISDNIQALKKRTEAPFFMAVVKGNAYGHGLVEVARTAVKAGADWLGTAQLSEAIA 60

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHP 123
           LR   +  P      L        +   + ++   + SV QL   +    +L    V H 
Sbjct: 61  LRQAGITVPILSWLYLASQTSATIREALENDIDVSLGSVGQLEVLAGIAKRLGRPAVVH- 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSL--IISHLACADDPSSHVNSVQLE 180
             L++D+G +R G   ++  +    +   +L G L +  I +HLA AD P+   N   + 
Sbjct: 120 --LELDSGLSRGGARKEDWAELVAQARQAELAGNLRVRGIWTHLAWADVPAHPGNITAVA 177

Query: 181 RFRTLI--SHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PM 232
            F   +  +H  G+   L   +SS+ IL  P +HF + R G+++YG    D ++ +   +
Sbjct: 178 EFEDAVREAHQAGLAPELRHVSSSANILDRPEFHFDMVRAGLAIYGLAPADHLDPADFGL 237

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  A +++++K  AG  VSY  Q        + +  +GYADG P  +SG       
Sbjct: 238 RPALSVTAPLVMLKKVPAGTGVSYEHQAITYEPRYLGLIPLGYADGIPKGISGRS----- 292

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPD----IKLDDVA 347
            V +GG+       VP++GK+ MD  M D+  D+  I+VGD   +FG         DD  
Sbjct: 293 VVNIGGR------TVPVIGKVCMDQFMVDLGPDASGIDVGDTAVLFGDPACGAASADDWG 346

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
            A G+   +++ RI  R  + Y 
Sbjct: 347 AAIGSHGDEIINRIAPRLPRAYA 369


>gi|294339132|emb|CAZ87486.1| Alanine racemase, catabolic [Thiomonas sp. 3As]
          Length = 367

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 174/372 (46%), Gaps = 37/372 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL +N   +   +  ++  AVVK NAYG G  +   AL  A    F +  + E  K
Sbjct: 9   IHTAALSHNLLRVRQATPASKVWAVVKANAYGHGIARAYGALRTA--DGFALLDLTEAEK 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G    ++  + +  NL  V+    Q+ + + +     +H   L+++
Sbjct: 67  LRALGWVGPILLLEGCFAPEDLALCERLNLWHVVHCREQIDWLA-VHRGNRTHRVFLKMN 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           TG NR+G S  EA        N   ++G+++ + +H ACAD+      +  L RF   + 
Sbjct: 126 TGMNRVGFS-PEAYAAAWERLNALPQVGEITHM-THFACADEAGGIDEA--LARFARGVG 181

Query: 188 HYKGIEASLASSSGILL---GPNYHFQLTRPGISLYGGTD---KINKSH-PMQTVVTAEA 240
           H  G E +L++S+  L+    P       RPGI+LYG +     ++ +H  ++  ++  +
Sbjct: 182 HLPG-ERTLSNSAAALVHGADPRVASDWVRPGIALYGSSPTGLALDAAHWKLRPAMSLRS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I I+   AGE V YG +    R   I V A GYADGYP          +P+   G   
Sbjct: 241 ELIDIQHIAAGECVGYGARFTAPRPMRIGVVACGYADGYPRV--------APN---GTPI 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSI----EVGDYIQIFGPD----IKLDDVALASGT 352
            + G    ++G+++MDM   D+    +      +G  + ++G D    + +D+VA A+GT
Sbjct: 290 VVDGVRTQLVGRVSMDMITVDLEPVFAAGNQPMIGSPVLLWGQDAQAELSIDEVAAAAGT 349

Query: 353 TNYDLLVRIGTR 364
             Y+L+  +  R
Sbjct: 350 LGYELMCALAAR 361


>gi|320109228|ref|YP_004184818.1| alanine racemase [Terriglobus saanensis SP1PR4]
 gi|319927749|gb|ADV84824.1| alanine racemase [Terriglobus saanensis SP1PR4]
          Length = 397

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 175/396 (44%), Gaps = 53/396 (13%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++  + L  N  ++ A +G     AVVK + YG G  + AP L  AG +   VTSVEEGV
Sbjct: 15  EVSASKLTRNLRAVQATAG-VDVLAVVKADGYGHGAVECAPVLAAAGAKWLGVTSVEEGV 73

Query: 70  KLRL---YTPQA---RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH- 122
           ++R      PQ    R+ V+ G+  G+        L PV+       ++  LM       
Sbjct: 74  RVRQALGILPQGIAPRVLVMCGVWAGEAVAAIRYALTPVVWE----PYHLDLMEAEAKKL 129

Query: 123 -----PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNS 176
                   ++VDTG  R G+     +      F  +   +L  ++SHLA A+        
Sbjct: 130 GLRDVAVHVEVDTGMARQGVRPGAQMAALLQRFGPESRLKLEGVMSHLASAEIVHGAQTE 189

Query: 177 VQLERFRTLISHYK--GIEASL-------ASSSGILLGPNYH--------FQLTRPGISL 219
            Q+ RF   +   +  G+  +L       A   G+++ P             +TR G++L
Sbjct: 190 SQMARFACALEQVRETGLRPALVHVGNTSAVDCGVVM-PQLRVMAESLGAMPMTRAGLAL 248

Query: 220 YGGTDKINKSHPM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           YG    +    P    + V+T + R++ +R+  AG+ V YGG     +   +A+  +GYA
Sbjct: 249 YGYALDLEGGAPELHPEPVMTWKTRVVSLREVQAGDHVGYGGTFTAVKTMRLALLPVGYA 308

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           DG    LS      SP+    G   + G    ++G+++MD+T+ D+T+   +E+G+   +
Sbjct: 309 DGLRRELS------SPA----GAVLLHGRRAAVVGRVSMDLTIVDVTEIPGVEIGEEAVL 358

Query: 337 FGPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368
            G      I  ++ A  + T  Y+++  I  R ++ 
Sbjct: 359 IGAQGAERIGAEEHARWAETIPYEIICGISERVSRV 394


>gi|319893025|ref|YP_004149900.1| Alanine racemase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162721|gb|ADV06264.1| Alanine racemase [Staphylococcus pseudintermedius HKU10-03]
          Length = 382

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 170/377 (45%), Gaps = 35/377 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +K++L A+  N++++  L  N     VVK NAYGLG  +IA  L   G + F V +++E 
Sbjct: 11  MKVNLDAITENYYALTKLQPNKTMMPVVKANAYGLGSIQIAQHLSQLGAEFFCVATLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL-- 126
           ++LR++  + +I +L  I P          +   + S   L   +  +         L  
Sbjct: 71  IELRMHGIKEKILILSSIPPDAINKAIQHRVAVTVPSRAWLEAATAEIDEDNEKTLWLHI 130

Query: 127 QVDTGFNRLGLSLQEA----LDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLER 181
           +VDTG NRLG+   EA    ++F H   N    G  S    H A  D+ S+H   +Q ER
Sbjct: 131 KVDTGMNRLGVKDIEAYHDIINFIHAHKNLVFEGAFSHF--HSADEDNDSAH---MQYER 185

Query: 182 FRTLI-SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
           F  +I S        + +S+G L          RPGI+LYG   +  I K    Q V   
Sbjct: 186 FEEIIESTEHPTYIHMQNSAGTLRFNPSLCNAFRPGIALYGYYPSTFIEKIATAQLVPAV 245

Query: 239 E--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +    ++ ++  + GE V YG       D  IA+  IGYADGY  ++ G +      V +
Sbjct: 246 QLVTEVMEVKSLIKGETVGYGQTYTAPEDMTIALLPIGYADGYLRSMQGAN------VRI 299

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALASGT 352
           G           I+G+++MD T   +    ++++G+ + +          ++ +A    T
Sbjct: 300 GTTE------CEIVGRVSMDRTAIRV--PATVQMGEEVILIDDQAHTSQSVESLAAQQQT 351

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++L  IG R  + Y
Sbjct: 352 INYEVLCNIGRRVPRVY 368


>gi|323463920|gb|ADX76073.1| alanine racemase 1 [Staphylococcus pseudintermedius ED99]
          Length = 382

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 172/380 (45%), Gaps = 41/380 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +K++L A+  N++++  L  N     VVK NAYGLG  +IA  L   G + F V +++E 
Sbjct: 11  MKVNLDAITENYYALTKLQPNKTMMPVVKANAYGLGSIQIAQHLSQLGAEFFCVATLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL-- 126
           ++LR++  + +I +L  I P          +   + S   L   +  +         L  
Sbjct: 71  IELRMHGIKEKILILSSIPPDAINKAIQHRVAVTVPSRAWLEAATAEIDEDNEKTLWLHI 130

Query: 127 QVDTGFNRLGLSLQEA----LDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLER 181
           +VDTG NRLG+   EA    ++F H   N    G  S    H A  D+ S+H   +Q ER
Sbjct: 131 KVDTGMNRLGVKDIEAYHDIINFIHAHENLVFEGAFSHF--HSADEDNDSAH---LQYER 185

Query: 182 FRTLI-SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSH--PMQ 233
           F  +I S        + +S+G L          RPGI+LYG       +KI  +   P  
Sbjct: 186 FEEIIESTEHPTYIHMQNSAGTLRFNPSLCNAFRPGIALYGYYPSAFIEKIATAQLAPAV 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +VT    ++ ++  + GE V YG       D  IA+  IGYADGY  ++ G +      
Sbjct: 246 QLVT---EVMEVKSLIKGETVGYGQTYTAPEDMTIALLPIGYADGYLRSMQGAN------ 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALA 349
           V +G           I+G+++MD T   +    ++++G+ + +          ++ +A  
Sbjct: 297 VRIGTTE------CEIVGRVSMDRTAIRV--PATVQMGEEVILIDDQAHTSQSVESLAAQ 348

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++L  IG R  + Y
Sbjct: 349 QQTINYEVLCNIGRRVPRVY 368


>gi|172040070|ref|YP_001799784.1| hypothetical protein cur_0390 [Corynebacterium urealyticum DSM
           7109]
 gi|171851374|emb|CAQ04350.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 488

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 172/396 (43%), Gaps = 54/396 (13%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           E ++L +DL AL NN          A+  AVVK + Y  G  +IA    + G     V +
Sbjct: 81  ELIQLVVDLGALANNTRFFADFVAPAQLMAVVKADGYNHGALRIAQTALDHGAAVVGVAT 140

Query: 65  VEEGVKLRLYTP-----QARIFVLYGIHPGQE-KIIFDTNL---IPVISSVPQLTFYSKL 115
           V E + LR   P      A IF  +   P  +    FD  L   +P ++    L   ++ 
Sbjct: 141 VPEALLLRERGPVKDGEPATIFA-WMWEPAMDLTPAFDAELTLGVPSLAHARSLIDQARS 199

Query: 116 MSCGVSHPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACAD-DPS 171
                     +  DTG +R G+S    QE +     +  + L  +  + +HLA AD D  
Sbjct: 200 RQAKPRPVVGVMSDTGMSRSGISPAEWQETIALLAAAEQEGLIAVDGVFTHLASADEDAQ 259

Query: 172 SHVNSVQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYG----- 221
             V   Q +RF+  I+  +    +     +A++   L  P+ H +L RPG+ +YG     
Sbjct: 260 RAVTDRQHQRFQQAIADCRAAGMAVPRNHIANTPATLTRPDMHHELVRPGLGVYGVDPVA 319

Query: 222 -GTDKINKSH---------PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
            GT      +         P+Q  ++  A++I  R    GE VSYGG      D+  AV 
Sbjct: 320 GGTPTGAAENAVPGLPDVLPLQRTMSMRAKVITTRVVPKGESVSYGGIWTAPEDTRTAVV 379

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---- 327
           A GYADG P + SG        V + G+ + +      +G+I MD  +  +  + S    
Sbjct: 380 AAGYADGVPRSASG-----KMQVSINGESYQQ------VGRICMDQFVVALGPAESAAAE 428

Query: 328 -IEVGDYIQIFGP----DIKLDDVALASGTTNYDLL 358
            ++ GD+  IFG     +  ++D+A A+GT  Y+++
Sbjct: 429 AVQPGDWAVIFGDPAAGEPSVEDLAAAAGTIPYEVV 464


>gi|290475457|ref|YP_003468345.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus bovienii
           SS-2004]
 gi|289174778|emb|CBJ81579.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus bovienii
           SS-2004]
          Length = 355

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 164/363 (45%), Gaps = 31/363 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L A ++N   +    G+++  +VVK NAYG G ++I  +L       F +  + E + 
Sbjct: 9   IHLDAFRHNLAVIRQKVGDSKIWSVVKANAYGHGLDRIWQSLMQT--DGFALLDMNEAIY 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR +  Q  I +L G     +  + D   L   + S  QL     +    +++P    L+
Sbjct: 67  LREHGWQGPILLLEGFFKLSDLQLIDQYGLTTTVHSYWQL---KAIEEARLNNPIDIYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG + +E       +   K  +   +++H A +D      N + ++    ++ 
Sbjct: 124 INSGMNRLGFTPEEYSQVVSMANCIKNIKSVTLMTHFANSD------NEIGIDEQFAVVE 177

Query: 188 HYKG--IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEAR 241
             K   +   LA+S  +L  P  H    RPGI LYG    G  +      ++  ++  + 
Sbjct: 178 CLKMDLLPRCLANSGAVLWHPKTHGDWVRPGIILYGASPSGKWRDIADVGLKPAMSLHSE 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II +     G  + YG +      + I   A GYADGYP         H+ +   G    
Sbjct: 238 IIAVHDLPKGAKIGYGSRYTTQYPTRIGTVACGYADGYP--------RHAST---GTPIL 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G    +LG I+MDM   D+T     E+G  ++++G ++ +D+VA ++GT  Y+LL  +
Sbjct: 287 VGGVRTQLLGAISMDMMTVDLTPCPQTEIGSTVELWGENLPVDEVAESAGTIGYELLCAL 346

Query: 362 GTR 364
             R
Sbjct: 347 AIR 349


>gi|225567900|ref|ZP_03776925.1| hypothetical protein CLOHYLEM_03973 [Clostridium hylemonae DSM
           15053]
 gi|225163301|gb|EEG75920.1| hypothetical protein CLOHYLEM_03973 [Clostridium hylemonae DSM
           15053]
          Length = 388

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 177/384 (46%), Gaps = 53/384 (13%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFFVTS 64
           +IDL A++ N   M N +   A+   VVK + YG G  +IA    P  Y  G   F V +
Sbjct: 10  RIDLDAVEYNIEMMKNNVRDGAKMLGVVKTDGYGHGAVQIAKMLSPKDYMWG---FAVAT 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E V LR    +  I VL  I P Q + +   ++        ++T Y++ M+  VS   
Sbjct: 67  LDEAVVLRHGGIEKPILVLGCIFPDQREDMIKHDI--------RMTLYTEEMAREVSELA 118

Query: 125 A---------LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                     +++DTG +RLG  + +EA D            +  + +H A AD+     
Sbjct: 119 VKIGKQAYIHIKLDTGMSRLGFLIGEEAADIIERISKMPNLVMEGMYTHFAKADEIDKSF 178

Query: 175 NSVQLERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
              Q+  +  +      +G+  +    ++S+GI+  P  +  L R GIS YG   +++++
Sbjct: 179 TGKQIRNYVWMKETLEKRGVAFTYYHCSNSAGIIDVPEANMDLVRAGISTYGLYPSEEVH 238

Query: 228 KSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           K + P++  +   + +  ++   AG  VSYGG     R + IA   +GY DGYP +LS  
Sbjct: 239 KENVPLKPAMELISHVAHVKWVDAGTPVSYGGTYITDRRTKIATIPVGYGDGYPRSLS-- 296

Query: 287 DSEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                       KG+  I G   PILG++ MD  M D T+   ++  D + + G D    
Sbjct: 297 -----------NKGYVLIHGKKAPILGRVCMDQFMVDATEIDDVKYADKVTLVGNDGGEK 345

Query: 341 IKLDDVALASGTTNYDLLVRIGTR 364
           + ++ ++  SG  NY+ +  +G R
Sbjct: 346 LPVEVLSGLSGRFNYEFVCDLGKR 369


>gi|325286092|ref|YP_004261882.1| Alanine racemase [Cellulophaga lytica DSM 7489]
 gi|324321546|gb|ADY29011.1| Alanine racemase [Cellulophaga lytica DSM 7489]
          Length = 368

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 165/372 (44%), Gaps = 25/372 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L  L+ N+  + + L+ N    AVVK  AYG    +IA  +   G     V    E
Sbjct: 9   LEINLNYLEQNYKYLKSKLAPNTMFLAVVKAFAYGSDQVQIAKKITELGADYLAVAYTSE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYA 125
           GV +R    Q  I VL+      E+I+   NL P I S   L  + K  S      +P  
Sbjct: 69  GVAIRKAGIQTPILVLHPQEVNFEEIV-AYNLEPSIYSARILDQFIKYTSSINKEDYPVH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184
           L+ +TG NRLG    +              +++   SH+A ++D         Q+++F++
Sbjct: 128 LKFNTGLNRLGFLKADVPQIVQKIQETTTIKVASAFSHMAASEDLTEKEFTEQQIQKFKS 187

Query: 185 LISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           + +   G+        + ++SGIL  P+ HF + R GI LYG  +       ++ + + +
Sbjct: 188 ISNTLDGLLCYSPIKHMCNTSGILNYPDAHFNMVRSGIGLYGFGNDAKYDVYLKPIASLK 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I  +      + V Y    K T   + A   +G+ADG               ++   K
Sbjct: 248 TVISQLHNLDPNQSVGYNMAYKATHKMVTATLPLGHADGI------------YRIYGNQK 295

Query: 300 G--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           G  FI G   PI+G   MDM M D+T+ ++ + GD + +F      D +A A+GT +Y+L
Sbjct: 296 GFVFINGKKAPIVGNTCMDMIMVDVTN-INCKEGDEVIVFNEVHTADALATAAGTISYEL 354

Query: 358 LVRIGTRYAKFY 369
           +  I  R  + +
Sbjct: 355 VTGISQRVNRVF 366


>gi|314934146|ref|ZP_07841507.1| alanine racemase [Staphylococcus caprae C87]
 gi|313653051|gb|EFS16812.1| alanine racemase [Staphylococcus caprae C87]
          Length = 382

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 182/390 (46%), Gaps = 46/390 (11%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L ++L A+ NN+   N L  N    +V+K N+YGLG  K+A  L   G   
Sbjct: 2   SEKFYRSTYLNVNLDAILNNYQIFNQLHHNKTVISVIKANSYGLGSVKVAHHLMEHGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           F V +++E ++LR++   A+I VL G+ P ++  I       V  +VP   +  + + + 
Sbjct: 62  FAVATLDEAIELRMHGIDAKILVL-GVIPTKD--ISKAIQHRVALTVPSKAWLKEAIRNI 118

Query: 119 GVSHPYAL----QVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-SLIISHLACADDPSSH 173
              +   L    ++D+G  RLG+   E      +  NKK   +   + +H A AD+P   
Sbjct: 119 PEKNEKKLWLHAKIDSGMGRLGMKDVEEYKDVVDIINKKDDLVFEGVFTHFASADEPGDS 178

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG------GTDK 225
           +N  Q E F+ +++  +      S  S++ +L+   +     R GISLYG        D 
Sbjct: 179 MNE-QYEFFKDIVNQVEKPNYIHSQNSAASLLMDGQF-CNAIRLGISLYGYYPSQYVRDN 236

Query: 226 INKSH--PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           + K H  P   +VT    I+ ++    GE VSYG      ++  IA+  +GYADGY   +
Sbjct: 237 V-KVHLRPSAQLVT---EIVQVKSLKVGETVSYGRTFTADKEMKIAILPVGYADGYLRAM 292

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-- 341
            G         ++     + G+   ++G++ MD T+  + D   +++GD + +    I  
Sbjct: 293 QG--------AYVN----VNGHQCEVVGRVCMDQTIVSVPD--DVKMGDKVILMDNHIDS 338

Query: 342 --KLDDVALASGTTNYDLLVRIGTRYAKFY 369
              ++ +A    T NY++L  +  R  + Y
Sbjct: 339 PQSVESLAEKQHTINYEVLCNLSKRLPRIY 368


>gi|332669569|ref|YP_004452577.1| alanine racemase [Cellulomonas fimi ATCC 484]
 gi|332338607|gb|AEE45190.1| alanine racemase [Cellulomonas fimi ATCC 484]
          Length = 421

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 172/391 (43%), Gaps = 46/391 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DL A++ N  S+ A + +A+  AVVK +AYG G    A A    G        V E
Sbjct: 30  RAVVDLAAIRGNVRSLAAHAPSAQVMAVVKADAYGHGLVPSARAAVEGGATWLGAAQVAE 89

Query: 68  GVKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            ++LR   +  P+    VL  ++     +      +  +S          + +  V+H  
Sbjct: 90  ALELRRAGVVGPR----VLTWLYAPGAPLADAVAAVVDVSVAAAWALDEVVAAARVAHRT 145

Query: 125 A---LQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDP-------- 170
           A   L+VDTG  R GL+   L   L     +  +   ++  + SHLA AD+P        
Sbjct: 146 ARVHLKVDTGLGRNGLTPGDLAALLPAVLRAQAEGAVEVVGVWSHLAFADEPAHPTVRAQ 205

Query: 171 ----SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
               +  V +V+    R  + H       LA+S+  L  P+ H  L RPGI++YG +   
Sbjct: 206 AGVFADAVRTVEQAGLRPEVRH-------LANSAATLTDPSVHHDLVRPGIAVYGLSPVP 258

Query: 227 NKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
               P    +   +T EA +  ++   AG+ +SY  +    +++++ +  +GYADG P  
Sbjct: 259 QVGGPADFGLVPAMTFEAELATVKTVPAGQGLSYAHRYVTPQETVVGIVPVGYADGVPRH 318

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
            SG   +  P    GG   + G  + + G++ MD  + D+        GD +++FG    
Sbjct: 319 ASG--GQDGP----GGPLRVGGRTLAVAGRVCMDQVVVDLGPGACEVAGDRVELFGTGAD 372

Query: 343 ----LDDVALASGTTNYDLLVRIGTRYAKFY 369
                 D A A+GT  Y+++ R+G R  + +
Sbjct: 373 GGPTAQDWADAAGTIAYEIVTRVGARVPRVH 403


>gi|290967925|ref|ZP_06559475.1| alanine racemase [Megasphaera genomosp. type_1 str. 28L]
 gi|290782064|gb|EFD94642.1| alanine racemase [Megasphaera genomosp. type_1 str. 28L]
          Length = 399

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 160/381 (41%), Gaps = 35/381 (9%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A   N   +  L G      +VVK NAYG G  ++A      G     V  + E 
Sbjct: 18  QIDLDAAIANIRGIRRLVGPQVCVTSVVKANAYGHGAIELAKVFLGHGADQVAVACLGEA 77

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--- 125
           V+LR      RI +L      + + +    + P +        +S+       H      
Sbjct: 78  VELRQGGITGRILILGHTDGHRAEELTAYGVEPTVFRYEDALRFSRAAQ--AQHRTVNIH 135

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADD--PSSHV-NSVQLER 181
           + VDTG  R+G            +     G QL  + +H A +D   P+       Q + 
Sbjct: 136 IAVDTGMGRIGYEPNANGIREIQAIAALPGLQLEGVFTHFAVSDSNTPADRAYTQAQYQC 195

Query: 182 FRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPM 232
           F   ++       + +     SSSG+L    +H  + RPGI  YG    GT       P 
Sbjct: 196 FTKFLTALAEVGIRPVYTHCCSSSGLLSQTAFHQNMVRPGILQYGYHPSGTVACTSFTP- 254

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q V++    I  ++    G+ +SYG   + T+++ IA   +GYADGYP  LS        
Sbjct: 255 QPVMSLRCCITHVKWVHKGQYISYGRHFQATKETCIATIPVGYADGYPRLLSNRT----- 309

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  + G  VP +G I MD  M D+TD  ++++GD   +FG      + L+++A 
Sbjct: 310 ------EVLVHGRRVPQVGNICMDQCMIDVTDVPNVQIGDEAVLFGTQGEGSLPLEELAA 363

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A GT ++++L  I  R  + Y
Sbjct: 364 AIGTIDHEILCNINRRVPRVY 384


>gi|121603048|ref|YP_980377.1| alanine racemase [Polaromonas naphthalenivorans CJ2]
 gi|166969423|sp|A1VIH8|ALR_POLNA RecName: Full=Alanine racemase
 gi|120592017|gb|ABM35456.1| alanine racemase [Polaromonas naphthalenivorans CJ2]
          Length = 365

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 167/370 (45%), Gaps = 35/370 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L AL +N   +   + +A+  AVVK NAYG G E++  AL +A    F +  ++E  +
Sbjct: 9   IHLAALSHNLARVRTAAPDAKVWAVVKANAYGHGIERVFDALRSA--DGFALLDLDEARR 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L G    ++ ++     L   I    Q+   +      + H   L+++
Sbjct: 67  LRALDWRGPILLLEGCFEARDLELCSRLGLWHTIHCQEQIDMLAA-HKTQLPHRVFLKMN 125

Query: 130 TGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           TG NRLG + +   A     N+   ++ ++SL+  H   AD P     + QL+ F  +  
Sbjct: 126 TGMNRLGFTPERFRAAWIRLNAL-PQVDEISLM-QHFPDADGPKG--ITAQLQAFDAVTH 181

Query: 188 HYKGIEASLASSSGILLGPNY---HFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240
              G E +L++S+ IL             RPGI LYG      +       +Q  +T  +
Sbjct: 182 DLPG-ERTLSNSAAILRHTGALAGRSDWVRPGIVLYGSAPDFPEHSASDWELQPTMTLSS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII ++   AG+ V YG          I V A GYADGYP         H P+   G   
Sbjct: 241 RIIGLQTLAAGDTVGYGSSFVAEGPMRIGVVACGYADGYP--------RHCPT---GTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK------LDDVALASGTTN 354
            + G    ++G+++MDM   D+T      +G  + ++G   K      +D+VA A+GT  
Sbjct: 290 LVNGVRTRMVGRVSMDMITVDLTPVPRAGMGSEVTLWGRASKGGAMLPIDEVARAAGTVG 349

Query: 355 YDLLVRIGTR 364
           Y+L+  +  R
Sbjct: 350 YELMCAVAPR 359


>gi|224499424|ref|ZP_03667773.1| hypothetical protein LmonF1_06877 [Listeria monocytogenes Finland
           1988]
          Length = 368

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 163/377 (43%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  +    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    Q    ++ G    ++  +   N I +       +  LT  + L        
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLENLTLEATLR------- 123

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELTPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G   PI+G++ MD T+  +      + G  + I G D    I  DD A    T
Sbjct: 296 ----LVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|284801216|ref|YP_003413081.1| hypothetical protein LM5578_0966 [Listeria monocytogenes 08-5578]
 gi|284994358|ref|YP_003416126.1| hypothetical protein LM5923_0920 [Listeria monocytogenes 08-5923]
 gi|284056778|gb|ADB67719.1| hypothetical protein LM5578_0966 [Listeria monocytogenes 08-5578]
 gi|284059825|gb|ADB70764.1| hypothetical protein LM5923_0920 [Listeria monocytogenes 08-5923]
          Length = 368

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 163/377 (43%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  +    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    Q    ++ G    ++  +   N I +       +  LT  + L        
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLENLTLEATLR------- 123

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G   PI+G++ MD T+  +      + G  + I G D    I  DD A    T
Sbjct: 296 ----LVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
 gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
          Length = 792

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 174/375 (46%), Gaps = 32/375 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + +    +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 433 LEVNLNAVVENLNYYRSFMKPETKMVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 492

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKL-MSCGVS-HP 123
           GV LR     A I ++   +P     K +FD +L P + S   L    K     G++  P
Sbjct: 493 GVTLRKAGITANIMIM---NPEMTAFKTMFDYDLEPEVYSFRLLDALIKAARKEGITGWP 549

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACAD-DPSSHVNSVQLER 181
             +++DTG +RLG   ++ +D   +    +   +   + SH   +D D   + +++Q +R
Sbjct: 550 VHIKLDTGMHRLGFDPEQDMDELIDRLTHQQAVIPRSVFSHFVGSDSDDFDNFSTLQFKR 609

Query: 182 F-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           F       +   SH   I   + +S+GI   P+    + R G+ LYG   + N+   + T
Sbjct: 610 FEMGSQKLQAAFSH--KILRHIDNSAGIEHFPDRQLDMCRLGLGLYGIDSRDNRI--LHT 665

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V T +  I+ + +    E V Y  + KLTRDS+IA   IGYADG    L    + H   +
Sbjct: 666 VSTLKTTILQMHQVPKSETVGYSRKGKLTRDSVIAAIPIGYADGLNRRLG---NRHCYCL 722

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G K          +G I MD+ + D+TD +  + GD ++IFG  + +  ++    T  
Sbjct: 723 VNGQKA-------EYVGNICMDVALIDVTD-IPCQEGDQVEIFGEHLPVTVLSDVLETIP 774

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  I  R  + Y
Sbjct: 775 YEVLTGISNRVKRVY 789


>gi|294497061|ref|YP_003560761.1| alanine racemase [Bacillus megaterium QM B1551]
 gi|294346998|gb|ADE67327.1| alanine racemase [Bacillus megaterium QM B1551]
          Length = 396

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 164/374 (43%), Gaps = 25/374 (6%)

Query: 10  KIDLTAL-KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +ID+ A+ +N  H    + G+    AVVK NAYG G +++A     AG     V  ++E 
Sbjct: 21  EIDVEAIFQNVNHVRELIPGHKTLMAVVKANAYGHGDKEVAEIALQAGADMLAVAFLDEA 80

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    +  I VL  +     +   + ++     S   +   + ++         L++
Sbjct: 81  IALRKKGIKESILVLGAVPTLHIQTALEWDVTVTAYSKAWIEEAASILDENSQLHMHLKI 140

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG  RLG+  +E L  T        G  L  + +H A AD+ +S     Q   F  ++ 
Sbjct: 141 DTGMGRLGVRTKEELHETMKIIASHSGFVLDGVFTHFATADELNSSYFEEQYTFFEEMVR 200

Query: 188 HYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYG--GTDKINK--SHPMQTVVTA 238
             K    +      A+S+ +L  P   F   R GIS+YG   ++++ +    P++   + 
Sbjct: 201 IVKEYNFTPPMIHCANSAALLRRPKDIFNGVRLGISMYGLSPSEELKEVLPIPLKQAFSL 260

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +RI+ ++K   G  +SYG   +   D  IA   +GYADG+   LS  +           
Sbjct: 261 HSRIVHVKKVKKGSHISYGATYEAKEDEWIATIPVGYADGWIRKLSNFEV---------- 310

Query: 299 KGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
              + G  VPI+G+I MD  M  +     +  +V    +  G +I +D+VA    T NY+
Sbjct: 311 --LVDGVKVPIVGRICMDQLMIKLPKMYKMGTKVTFIGKQKGAEITIDEVAKHLETINYE 368

Query: 357 LLVRIGTRYAKFYT 370
           +   +  R  + YT
Sbjct: 369 IPCMVAARVPRVYT 382


>gi|319952867|ref|YP_004164134.1| alanine racemase [Cellulophaga algicola DSM 14237]
 gi|319421527|gb|ADV48636.1| Alanine racemase [Cellulophaga algicola DSM 14237]
          Length = 375

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 173/386 (44%), Gaps = 57/386 (14%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+LTAL++N+  +   +S   +   VVK  AYG     IA  L   G     V   EE
Sbjct: 9   LEINLTALEHNYRYLKTKISSKTKFLGVVKAFAYGSDAVSIAQKLVALGADYLAVAYTEE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVS----- 121
           GV LR    +  I VL   HP  + + FDT    +I    +   YS ++++  ++     
Sbjct: 69  GVSLRNAGIKIPILVL---HP--QIVSFDT----IIERCLEPNLYSERILTAFITAAERH 119

Query: 122 ----HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-----IISHLACADDPSS 172
               +P  L+ +TG NRLG + ++       S  KKL + +      I SHLA ++D   
Sbjct: 120 QQKIYPIHLKFNTGLNRLGFNAKDI-----PSIVKKLSETTAVKVLSIFSHLAASEDLEE 174

Query: 173 HVNSV-QLERFRTLISHYKGIEASL--------ASSSGILLGPNYHFQLTRPGISLYGGT 223
              ++ Q++ F  + +    I+A+L        A++SGI+  P  HF + R GI LYG  
Sbjct: 175 KDFTLNQIKNFNIISTQ---IDAALPYIPFKHLANTSGIINYPEAHFDMVRSGIGLYGFG 231

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           + I++      V T +  I  I      E V Y       +    A   +G+AD      
Sbjct: 232 NDIDEDKNFIPVATLKTNISQIHYLEPNESVGYNRAFTSNKKIKTATLPLGHAD------ 285

Query: 284 SGLDSEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341
            G+  E+       GKG   + GY  PI+G   MDM M D+TD +    GD + +FG   
Sbjct: 286 -GIGREYG-----NGKGVVCVHGYYAPIIGNTCMDMIMVDVTD-IDCSEGDEVIVFGNKP 338

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367
              + A  + T +Y++L  I  R  +
Sbjct: 339 TATEFAAGANTISYEVLTGISQRVKR 364


>gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
 gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
          Length = 826

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 174/380 (45%), Gaps = 42/380 (11%)

Query: 9   LKIDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+ +N  W+  + L    +   ++K +AYG G  +IA  L +  V    V   +
Sbjct: 467 LEVNLNAVVDNLNWYR-SFLKPTTKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVAD 525

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKL-MSCGVS-H 122
           EGV LR     + I ++   +P     K +FD +L P + S   +    K     G++  
Sbjct: 526 EGVTLRKNGITSNIMIM---NPEMTSFKTLFDYDLEPEVYSFRLMDALVKAAQKEGITGF 582

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSSHVNSV 177
           P  +++DTG +RLG   Q+ +D       K+L Q + II     SH   +D  + + +  
Sbjct: 583 PVHIKLDTGMHRLGFDPQKDMD----ELIKRLKQQNAIIPRSVFSHFVGSD--ADNFDEF 636

Query: 178 QLERFRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              +F       K ++A+ +        +SSGI   P     + R G+ LYG   + NK+
Sbjct: 637 SAHQFALFDEGSKKLQAAFSHKIIRHMDNSSGIEHFPERQMDMCRLGLGLYGINPRTNKT 696

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +  + T +  I+ +R   AG+ V Y  +  + RDS+IA   IGYADG    L    + 
Sbjct: 697 --INNISTLKTTILQLRNVPAGDTVGYSRKGTIDRDSVIAAIPIGYADGLNRHLG---NR 751

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
           H   +       + G     +G I MD+ M D+T  +  + GD ++IFG  + +  ++  
Sbjct: 752 HCYCL-------VNGQKAEYVGNICMDVAMIDVT-GIDCKEGDSVEIFGDHLPVTVLSDT 803

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T  Y++L  I  R  + Y
Sbjct: 804 LDTIPYEVLTTISNRVKRVY 823


>gi|251795108|ref|YP_003009839.1| alanine racemase [Paenibacillus sp. JDR-2]
 gi|247542734|gb|ACS99752.1| alanine racemase [Paenibacillus sp. JDR-2]
          Length = 394

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 171/382 (44%), Gaps = 30/382 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R++I L AL  N H+        R   A VK NAYG G  +IA      GV    V  ++
Sbjct: 9   RVEISLDALNRNLHAFRGAMPEGRLLMASVKANAYGHGAVEIAREAERFGVDYLGVAFLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI--SSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I VL  +      I  D ++   +    + +        + G     
Sbjct: 69  EALQLRHAGIATPILVLGFVPADALAIARDKDITIALFREDILEAAAALPAQADGKKLKA 128

Query: 125 ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            +++D+G  RLG+    EA+ F   + +    ++  + +H A AD+        Q ERF 
Sbjct: 129 HIKIDSGMGRLGIIGKDEAIAFIRKALDVPQLEIEGMFTHYAKADETDKSYTRQQYERFH 188

Query: 184 TLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTV 235
            +  + +  +  +     A+S+  +  P Y   + R GIS+YG   +D++++    ++ V
Sbjct: 189 AVAEYVRSNKLPIRILHAANSAAGIDTPEYGGDMVRLGISMYGLYPSDEVSRERIKLEPV 248

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++ +++++K   G  +SYG +    ++  I    IGYADG+   LSG    H     
Sbjct: 249 LSLKSEVVMVKKTPPGWGISYGTRYVTKQEECIGTLPIGYADGFSRMLSG--KAHV---- 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDI---TDSLSIEVGDYIQIF----GPDIKLDDVAL 348
                 ++G  VP+ G I MD  M  +   +   ++E G+ + +     G +I  +++AL
Sbjct: 303 -----LVRGVKVPVRGTICMDQCMIALDPASADAAVEPGEEVVLIGRQGGEEISAEELAL 357

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
             GT NY++   +  R  + Y 
Sbjct: 358 QLGTINYEVTCMLAARVPRVYV 379


>gi|78356590|ref|YP_388039.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218995|gb|ABB38344.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 388

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 162/393 (41%), Gaps = 45/393 (11%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E L  +IDL AL++N+ ++ +  G   R  AVVK +AYG G   +A  L   G   F V 
Sbjct: 8   EPLWAEIDLCALRHNFSAVRSHVGKGVRIMAVVKADAYGHGAVAVAHELLRQGADAFGVA 67

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E V+LR       + +     P +  ++    +I  + S          +       
Sbjct: 68  RLDEAVELRENGITQPVLIFGPTPPQKAPLLARYGIIQTVHSDTYAEALQAALLAQQPRR 127

Query: 124 YA---LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL------------SLIISHLACAD 168
                ++VDTG  RLG         T N  +  LGQ+              + +H A +D
Sbjct: 128 RVQVHIKVDTGMGRLGYIA------TGNGGDVPLGQVFAGFSSRTMLDVCGVFTHFAASD 181

Query: 169 DPSSHVNSVQLERFRTLISHY-KGIEASL----ASSSGILLGPNYHFQLTRPGISLYG-- 221
                    QL  F   +S    G+   L    A+S+  ++ P   F + RPGI LYG  
Sbjct: 182 AADPVTARRQLAVFEQALSELPAGMRDRLCVHAANSAATMVMPGARFDMVRPGIILYGLR 241

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
              +       ++ V++ + RI  +++  AG  VSYG        ++IA    GYADGY 
Sbjct: 242 PSAEMDTAGFDLRPVMSLKGRIASVKRVPAGFTVSYGHTHVTAAGTVIAAVPAGYADGYS 301

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-- 338
             LS             G   + G    + G++ MD TM D+     ++ GD + + G  
Sbjct: 302 RLLSSC-----------GTMLVHGRPAAVTGRVCMDQTMIDVGHIDGVQEGDEVVLLGRQ 350

Query: 339 --PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
               +  DD A  + T NY+++ RI  R  + Y
Sbjct: 351 GAESVTADDHARLTSTINYEVVSRILARVPRVY 383


>gi|238927300|ref|ZP_04659060.1| possible alanine racemase [Selenomonas flueggei ATCC 43531]
 gi|238884887|gb|EEQ48525.1| possible alanine racemase [Selenomonas flueggei ATCC 43531]
          Length = 283

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 26/255 (10%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L ++TG  R+G+  ++A +           +L  I SH A AD P       Q++ F+  
Sbjct: 42  LTIETGMGRIGVHPKDAAETAKKIAALPNVELEGIFSHFALADIPDKTFTKQQVKLFKDA 101

Query: 186 ISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTV 235
                 IEA+        +A S+ IL  P+ HF + R GI  YG   +D++ +   ++  
Sbjct: 102 CD---AIEAAGIHIPIKHIAESAAILEIPDVHFDMVRAGIIQYGLWPSDEVTRPIDLRPC 158

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   ARI+ I+    GE V YG +    R++ IA   +GYADGY               +
Sbjct: 159 MKFCARIVYIKTIQPGESVGYGRKFIAERETRIATLPVGYADGYI------------RAY 206

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTN 354
            GG   + G   PI G++ MD  M D+TD    ++GD   +FG D +  D++A  + T N
Sbjct: 207 AGGSVEVCGKRAPIAGRVCMDQFMIDVTDIPEAKLGDVCTLFGSDSLTADEIAGWANTIN 266

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  +  R  + Y
Sbjct: 267 YEVVCLVSERVPRVY 281


>gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
 gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
          Length = 824

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 170/382 (44%), Gaps = 46/382 (12%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL A+  N +   + +    +   +VK +AYG G  +IA  L + GV    V   +E
Sbjct: 465 LEVDLAAIAANLNYFRSFMKPETKIVCMVKASAYGAGSVEIAKTLQDRGVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQL-TFYSKLMSCGVSH-P 123
           G  LR     + I ++   +P       +F  +L P +     L          G+++ P
Sbjct: 525 GADLRKAGITSNIIIM---NPEMSSFNTLFAYDLEPEVYDFSLLEALIRAAKQQGITNFP 581

Query: 124 YALQVDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLI----ISHLACADDPS-SHV 174
             +++DTG  RLG      +   +D  H+       Q +LI     SH   +D P+    
Sbjct: 582 IHIKLDTGMKRLGFDPLHDMPALIDRLHH-------QAALIPRSVFSHFVGSDSPAFDAF 634

Query: 175 NSVQLERF-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
           +  Q E F       +   SH   I   + +S+GI   P  H  + R G+ LYG  D I+
Sbjct: 635 SDHQFELFDKASQQLQAAFSH--KILRHICNSAGIERFPQRHLDMVRLGLGLYG-VDPID 691

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            +H +  V T +  I+ IR   AGE V Y  +  L R+S IA   IGYADG    L    
Sbjct: 692 -NHIINNVTTLKTTILQIRDVQAGETVGYSRKGVLERNSRIAAIPIGYADGLNRHLGN-- 748

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
                   + G+   K Y V   G I MD+ M D+TD +  + GD +++FGP + +  ++
Sbjct: 749 --RRAYCLVNGR---KAYYV---GNICMDVCMIDVTD-IPCKEGDSVEVFGPHLPITVLS 799

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
            A  T  Y++L  +  R  + Y
Sbjct: 800 DALETIPYEILTSVSNRVKRIY 821


>gi|167750416|ref|ZP_02422543.1| hypothetical protein EUBSIR_01390 [Eubacterium siraeum DSM 15702]
 gi|167656567|gb|EDS00697.1| hypothetical protein EUBSIR_01390 [Eubacterium siraeum DSM 15702]
          Length = 379

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 172/376 (45%), Gaps = 33/376 (8%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           N FL+    +IDL AL++N++ +  L+      AVVK NAYG   + +   L   GV+ +
Sbjct: 2   NRFLKRAWAEIDLDALEHNYNEIKKLAKGKDILAVVKANAYGHDDKAVCLKLQELGVKYY 61

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLMS 117
            V+++ EG KLR +     I             + +  +     SV    QL+ Y+  +S
Sbjct: 62  GVSNLWEGEKLRCHGITGTILTFGYTDEDYFDELLEYGITQTAGSVQYAKQLSDYA--VS 119

Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALD-FTHNSFNKKLGQLSLIISHLACAD--DPSSH 173
            GV  P  ++V+TG  R+G+ S QE LD       + K        +H A AD  DPS  
Sbjct: 120 KGVKLPVHIKVNTGMTRVGIDSQQEMLDILAMPGLDCKAA-----YTHFAAADSLDPSDV 174

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-- 231
             + + +     I+  KG+     +S GI+   ++   + R G+ LYG         P  
Sbjct: 175 EYTDRQQEKLMKIAKDKGLLIHSQNSGGIIYHGDFGGDIVRAGVILYGHYPNYPLEVPFD 234

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           M++V+T ++ +  ++   AG  +SYG      ++  +AV  IGYADGY    S       
Sbjct: 235 MKSVMTVKSVVSQLKTIPAGTQISYGRTYTAEKEMTVAVIPIGYADGYFRDFSS------ 288

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK---LDDVAL 348
                 GK  I G +  ++G++ MD T+ D+++   I+ GD + ++    +   +D  A 
Sbjct: 289 -----KGKMLINGVLCNVVGRVCMDQTIVDVSNVPDIKTGDIVYVYSDKCRETSVDYNAS 343

Query: 349 ASGTTNYDLLVRIGTR 364
              T  Y+L   +  R
Sbjct: 344 LIDTIGYELTCAVALR 359


>gi|315453697|ref|YP_004073967.1| alanine racemase [Helicobacter felis ATCC 49179]
 gi|315132749|emb|CBY83377.1| alanine racemase [Helicobacter felis ATCC 49179]
          Length = 378

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 173/384 (45%), Gaps = 39/384 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  AL +N+  M+AL G   +  AVVK NAYG G  + +      G     V + +E
Sbjct: 9   VEIDTHALAHNFQVMHALLGTKMSVMAVVKANAYGCGALEASAVFLEQGAGYLGVATYDE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYA 125
            ++LR    Q  I +L G  P    + +   N+   +    Q  ++S   +  G      
Sbjct: 69  ALELRARFAQVPILIL-GFTPNHMAQELIQANITQTLFCEKQARYFSDAALKLGRKLKVH 127

Query: 126 LQVDTGFNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++VDTG +RLG   + Q A+     +  K L +L  I +H + AD    +    Q  RF 
Sbjct: 128 IKVDTGMSRLGFFPTQQSAIAIAKIAQLKGL-ELEGIFTHHSNADALYKNYAQEQATRFI 186

Query: 184 TLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHP 231
             +   +  G+E     +A+S+  L  P++   + R G++LYG    I        K   
Sbjct: 187 EFLEQLRRMGLEFKYQHMANSACALSMPSFGMNMARIGLALYGLHPSIYTQDALEKKGFA 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T +A+I+ ++   AG LV YG     T+ + + V  +GY DG+            
Sbjct: 247 LRHVLTLKAQIVSLKDIPAGRLVGYGEDYYCTQTTRVGVLPLGYGDGF------------ 294

Query: 292 PSVFLGGK--GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PD---IKLDD 345
            S  LG K  G + G  VP++G + MD    D+ D +  + GD + + G P    +   D
Sbjct: 295 -SKILGNKAWGLLHGQKVPVIGGVCMDQCFIDVGD-IKAQEGDEVILLGDPQSGAMGAGD 352

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   G  NY+ +  +  R  + Y
Sbjct: 353 IAKILGIINYEAITMLTKRLPRVY 376


>gi|114567397|ref|YP_754551.1| alanine racemase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338332|gb|ABI69180.1| alanine racemase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 377

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 169/380 (44%), Gaps = 36/380 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDLTA+K+N   +      A   A+VK +AYG G  +++ A    GV+   V S++E +
Sbjct: 10  EIDLTAIKHNILMIRNKVSPAIIMAIVKADAYGHGMLEVSRACLQEGVEWLGVASLDEAI 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-------YSKLMSCGVSH 122
            LR    ++ + VL G  P  E+    T    + +SV  L+F        S+L      H
Sbjct: 70  HLREAGIKSPVLVL-GFIP--EEFAEATVEYDISASVFSLSFARALSQAASRLSRTARVH 126

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++D+G  RLG + +  +L            ++  I +H A AD         QL  
Sbjct: 127 ---IKIDSGMGRLGFAPIPSSLALVQEIAALPGIEVEGIFTHFADADAEDKSFTYEQLRI 183

Query: 182 FRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
           F   +S  +  G+   L   ++S+ IL  P     + R GI LYG     D       + 
Sbjct: 184 FSNFVSDLEKGGLSIPLKHCSNSAAILDIPEARLNMVRAGIVLYGLYPSEDMKRLGLDII 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T ++RI  ++    G  +SYG      + + +A   IGYADGY   LS   +     
Sbjct: 244 PAMTLKSRISFLKVLEPGHYISYGRTFCCQQATRVATVPIGYADGYHRLLSNRST----- 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---IKLDDVALAS 350
                   I+G  VP +G + MD  MFD++    ++ GD + +FG     +  DD+A   
Sbjct: 299 ------AVIRGEKVPSIGMVCMDQCMFDVSGLERVKEGDEVILFGKPSDGVTADDLARIL 352

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           GT NY+++  +  R  + + 
Sbjct: 353 GTINYEIVCAVSARVPRLHV 372


>gi|291451858|ref|ZP_06591248.1| alanine racemase [Streptomyces albus J1074]
 gi|291354807|gb|EFE81709.1| alanine racemase [Streptomyces albus J1074]
          Length = 391

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 161/374 (43%), Gaps = 32/374 (8%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL-- 73
           ++ N  ++ A +  A   AVVK +AYG G  + A A   AG     V +  E ++LR   
Sbjct: 1   MRANVRALRARTDGAAYMAVVKADAYGHGMVRCAEAALQAGATWVGVATPYEALELRAAG 60

Query: 74  YTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY-ALQVDTG 131
            TP+ AR+        G  +   + +L   +S +  L   ++            L+ DTG
Sbjct: 61  VTPERARVMCWLWTPGGPWREGIEADLDMSVSDLWALAEVTEAARATGRRARIQLKADTG 120

Query: 132 FNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-- 186
             R G       + +D    +  + L  ++ + SH ACAD+P     + QL RF  +   
Sbjct: 121 LGRNGCQPADWADLVDRARAAEREGLVTVTGLWSHFACADEPGHPSIAAQLARFDEMSGR 180

Query: 187 SHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
           ++  G+      +A+S  +L  P   F L RPGI++YG +          H ++ V+T  
Sbjct: 181 AYAGGLRPEVRHMANSPAVLTLPEARFDLVRPGIAMYGLSPAPELGTPADHGLRPVMTLA 240

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A + L++    G  VSYG        + + +  +GY DG P   SG            G 
Sbjct: 241 APLALVKHVPGGHGVSYGHHYVTAGPTTLGLVPLGYGDGVPRHASGA-----------GP 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
             + G    + G+I MD  + D+      E G    +FGP    +   +D A A+GT  Y
Sbjct: 290 VLVDGKWRTVAGRIAMDQFVVDLGGETPPE-GTEAVLFGPGDRGEPGAEDWARAAGTIGY 348

Query: 356 DLLVRIGTRYAKFY 369
           +++ RIG R  + +
Sbjct: 349 EIVTRIGGRVPRVH 362


>gi|296138608|ref|YP_003645851.1| alanine racemase [Tsukamurella paurometabola DSM 20162]
 gi|296026742|gb|ADG77512.1| alanine racemase [Tsukamurella paurometabola DSM 20162]
          Length = 380

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+ +N   +   +  A   AV+K + YG G   +A A    G  +  VT+V+E + 
Sbjct: 18  IDLGAVTHNVRVVARHAPTADVMAVLKADGYGHGAVPVARAALAGGATELGVTTVDEALV 77

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT----FYSKLMSCGVSHPYAL 126
           LR       I         +  I  D  +   +SS  QL        +  +  V H   +
Sbjct: 78  LRDAGITVPILSWLSTSGYERAIAADVRI--GVSSPRQLAEVLAAAGRAGAPAVLH---V 132

Query: 127 QVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +VDTG NR G++  E     D   ++    L +L  + +HLA  D+P      VQ +   
Sbjct: 133 KVDTGLNRNGVAPHEWATTRDALVDAERAGLARLQGVFTHLAHGDEPDHPFLDVQRDALA 192

Query: 184 TLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
              +  +       +   A+S+  L  P+ HF L RPGI++YGG    ++   ++ V+T 
Sbjct: 193 AAAADARAHGLYPTQVHAANSAAALTRPDLHFDLVRPGIAIYGGVPVPDRDFGLRPVMTF 252

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A +IL++   AG+ VSYG      RD+++ +   GYADG    LSG         F   
Sbjct: 253 AAPVILVKPLAAGDGVSYGHTWIAPRDTVVGLVPAGYADGVWRPLSGR--------F--- 301

Query: 299 KGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP---DIKLDDVALASGTTN 354
           +  ++G   P +G++ MD  + D+  D   +  GD   +FG      +  D     GT +
Sbjct: 302 EVTVQGRRFPQVGRVCMDQFVIDLGPDGGGVSEGDTAVLFGAAPGAARACDWGEKLGTID 361

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++L  +  R  + YT
Sbjct: 362 YEVLTAVRGRVHREYT 377


>gi|227528902|ref|ZP_03958951.1| alanine racemase [Lactobacillus vaginalis ATCC 49540]
 gi|227351176|gb|EEJ41467.1| alanine racemase [Lactobacillus vaginalis ATCC 49540]
          Length = 374

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 169/384 (44%), Gaps = 41/384 (10%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +L +DL A+K+N H    +L+ N++  AVVK NAYG G   +A     AG     V  ++
Sbjct: 10  KLIVDLGAIKHNIHEQQKSLAPNSKILAVVKANAYGNGLVPVAQTAIKAGATGTCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPY 124
           E ++LR     + I VL GI P +   I  +  +   + S+  L  Y +L ++   + P 
Sbjct: 70  EALELRDSGITSLILVL-GITPVENAHIAAEAGVSLTVGSLDWLEDYHQLAIANHWTKPL 128

Query: 125 A--LQVDTGFNRLGL----SLQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              L +D+G  R+G     S  EA+ F   H+ F     +   + +H A AD       +
Sbjct: 129 KVHLGIDSGMGRIGFTTVESFNEAVKFVREHHEF-----EFEGMFTHFATADSADDSYFN 183

Query: 177 VQLERFRTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSH 230
            Q+ ++   +S    +   +    S++G+           R GIS+YG      ++  + 
Sbjct: 184 KQVNKWEQFVSSLTELPPFVHMANSATGMWHREKITANTVRMGISMYGQNPSGRELAATL 243

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q V      I  ++K  AGE VSYG       D  +A   IGYADGYP  ++G     
Sbjct: 244 DLQPVEQLVTSISFVKKLKAGESVSYGATYTAQEDEWLATLPIGYADGYPRCMTGY---- 299

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDV 346
                   K  + G    I G++ MD  M  +       VG  + + G     +I  +D+
Sbjct: 300 --------KVLVDGQFCDIAGRVCMDQMMIRLPKPYP--VGTQVVLMGRSGNKEITANDL 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A  + T NY+++  I  R  + YT
Sbjct: 350 ADRADTINYEIMTNISNRVHRVYT 373


>gi|23100604|ref|NP_694071.1| alanine racemase [Oceanobacillus iheyensis HTE831]
 gi|50897491|sp|Q8ELR9|ALR1_OCEIH RecName: Full=Alanine racemase 1
 gi|22778837|dbj|BAC15105.1| alanine racemase [Oceanobacillus iheyensis HTE831]
          Length = 376

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 168/378 (44%), Gaps = 30/378 (7%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++ L AL  N     N L   +R  AVVK + YG G   IA     AG +   V  ++E
Sbjct: 11  VEVSLDALTYNVRQFKNHLQEKSRLMAVVKADGYGHGAVPIARRSLEAGAEYLGVAFIDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPG---QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            +++R     A I +L G  P    +E +  D  L  V S+           S       
Sbjct: 71  ALQIREAGILAPILLL-GFTPSYAVREAVRHDLTLT-VYSTETLEAIKDAARSLDKKAKI 128

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183
            ++VD+G +R+GL   E +     S   +  ++  I +H A AD D S      Q E F+
Sbjct: 129 HIKVDSGMSRIGLRSSEEVISLMTSLQTEEIEVEGIFTHFADADNDESDAYTYKQFETFQ 188

Query: 184 TLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVV 236
            ++   +    S+      +S+  +  P+ H  + R GISLYG      + +   +Q V+
Sbjct: 189 GIMEALENEGYSIPIKHCCNSAATIAFPDMHMDMVRVGISLYGLYPGQHLKEILSLQQVM 248

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +A+ +LI+     + +SYG   +    S IA   IGYADG+   LS +          
Sbjct: 249 SFKAKPVLIKDVPPHQPISYGLTYETKETSKIATLPIGYADGFSRLLSNV---------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD----IKLDDVALASG 351
            G   + G   PI+G+I MD +M D+++    +   D + IFG +    I LD VA    
Sbjct: 299 -GHVTVHGTACPIVGRICMDQSMIDVSEVQTDVTKDDIVTIFGDENAGYIPLDVVAEQMQ 357

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y+ +  IG R  + Y
Sbjct: 358 TIHYETVCLIGKRVPRHY 375


>gi|256848377|ref|ZP_05553820.1| alanine racemase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714975|gb|EEU29953.1| alanine racemase [Lactobacillus coleohominis 101-4-CHN]
          Length = 378

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 159/378 (42%), Gaps = 38/378 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL AL++N  +  A L   +    VVK +AYG G  ++A  L   GV  F V  ++EG 
Sbjct: 13  VDLGALRHNIRAQKAALPAGSHIFGVVKADAYGNGMTQVAHVLSEEGVAGFCVALLDEGF 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCG-VSHPYA-- 125
            LR    Q  I VL GI P Q   +   N I + + SV  L  Y ++     V  P    
Sbjct: 73  TLRNAGLQETILVL-GITPVQYAPLAAENGISLTVGSVDWLKEYQQVAQTNHVRQPLKVH 131

Query: 126 LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           L +DTG  R+G       ++AL        +  G    I +H A  D         QL +
Sbjct: 132 LGLDTGMGRIGFQDVTEFKQALQLVQTPEFEFEG----IFTHFATVDSADKTYFEHQLTK 187

Query: 182 FR---TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235
           ++    ++ H         S++G+    +      R GISLYG      ++  S  +Q V
Sbjct: 188 WKQFLAVVDHRPRYVHMANSATGLWHQQDIESNTVRMGISLYGCNPSGRELQPSFELQPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +       ++K   GE VSYG      +D  +A   +GYADGY   L+G          
Sbjct: 248 TSLITHATFVKKLHRGESVSYGATYTAQQDEWVATLPVGYADGYRRELTGYHV------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
                 + G +  ILG+I MD  M  +   +   VG    + G     +I   D+A   G
Sbjct: 301 -----LVNGQVCDILGRICMDQMMIRLPHQMP--VGTEAVLLGRSGDQEITATDLADQLG 353

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++L   G R A+ Y
Sbjct: 354 TINYEVLTGFGDRLARKY 371


>gi|302388874|ref|YP_003824695.1| alanine racemase [Thermosediminibacter oceani DSM 16646]
 gi|302199502|gb|ADL07072.1| alanine racemase [Thermosediminibacter oceani DSM 16646]
          Length = 384

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 167/351 (47%), Gaps = 30/351 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++++L AL+ N+ ++    G     AVVK +AYG G + +A AL  AGV+ F V  +EE 
Sbjct: 8   MEVNLRALRQNYETIRREVG-VPVMAVVKGDAYGHGAKDVALALQEAGVEWFGVEFLEEA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V+LR    + RI  L G    ++  IF + ++IP I ++ +    +K  +  GVS    L
Sbjct: 67  VELREAGIKGRILCLTGPVTREDCEIFIEKDVIPTIYNLDRADLLNKTAARRGVSCRVHL 126

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSSHVNSVQLER 181
           + DTG  R G  L E LD   +     L   S +I     +H A A          QL  
Sbjct: 127 KFDTGLGRFGF-LYEDLDRVIDG----LRSFSHLIYEGAYTHFAEAFAKKPDYTLYQLSV 181

Query: 182 FRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F+ ++   +  GI+ ++   A+S   +  P     + R G +LYG T   N S  ++ V 
Sbjct: 182 FQRVLDKLEQSGIKVAIRHAANSVAAMDFPEARLDMVRIGSALYGITMFKNTSVRLERVA 241

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG-------YPLTLSGL--D 287
             + +II ++    G  + YG   K  RD++I +  +GY +G       Y  TL GL  +
Sbjct: 242 RLKVKIIDVKSLPRGSYIGYGRTYKTQRDTVIGIIPVGYFEGLKVQRRNYAFTLVGLLRN 301

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
             H    FL      F+ G  +PILG+I M +T  D+T +    +GD + +
Sbjct: 302 IYHEIKDFLNPVPLVFMDGKPLPILGRIGMQLTAIDLTGT-GAGIGDEVTV 351


>gi|224542708|ref|ZP_03683247.1| hypothetical protein CATMIT_01893 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524418|gb|EEF93523.1| hypothetical protein CATMIT_01893 [Catenibacterium mitsuokai DSM
           15897]
          Length = 328

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 154/338 (45%), Gaps = 16/338 (4%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGV-QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
           A++K NAYG G +++A  L +  + Q F V +++E V LR    +  I VL  +      
Sbjct: 3   AIIKANAYGHGYKEVASVLKDEPIIQMFAVATLKEAVDLRNLGVKQDILVLGAVPLEDLN 62

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
           I  + N+   + S   L   +++          L +D+G NR+G   ++  +      + 
Sbjct: 63  IAIEKNISLALFSFDYLNKINEMHHYDAPVKVHLSIDSGMNRIGFKTEKEFEQAMEMIDP 122

Query: 153 KLGQLSLIISHLACADDPSSHVN-SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
               +  I +H A ADD S       QL  F++++ + +       +S+ ++   +    
Sbjct: 123 AKIDVEGIFTHFATADDFSQDDEYEKQLALFKSIVGNNRFKYVHCDNSAAMMFHHSDFGN 182

Query: 212 LTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
           LTR GI++YG   +  ++  ++  ++   ++ +++    GE + YG       D  +A  
Sbjct: 183 LTRIGIAMYGVDPRGEENKDLKQAMSLYTKVAMVKVVPKGEKIGYGMTYTADEDQYVATL 242

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331
            IGYADG+     G +             +I G+  P++G++ MD  M  + +  +++ G
Sbjct: 243 PIGYADGFTRANQGREV------------YINGHYYPVVGRVCMDQCMVKVDE--NVKPG 288

Query: 332 DYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D ++IFG  I L  +A    T  Y+++  I  R  + Y
Sbjct: 289 DDVEIFGEHISLAKMAKEINTIPYEIICLISPRVERIY 326


>gi|116669669|ref|YP_830602.1| alanine racemase [Arthrobacter sp. FB24]
 gi|116609778|gb|ABK02502.1| alanine racemase [Arthrobacter sp. FB24]
          Length = 402

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 176/387 (45%), Gaps = 41/387 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ +DL+A+ +N  ++   S      AVVK NAYG G   +A    +AG        + E
Sbjct: 18  QVSVDLSAISDNIRTLRQRSAAPHFMAVVKGNAYGHGLVDVARTALSAGADWLGTAQLHE 77

Query: 68  GVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYS----KLMSC 118
            + LR     A +     +        +E + +D ++   + SV QL   +    +L   
Sbjct: 78  AIALRRAGITAPVLSWLYLAAASSETIREALEYDVDV--SLGSVAQLDVVAGIARRLGRP 135

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHVN 175
            V H   L++DTG +R G   ++  +    +   ++ G LS+  + +HLA AD P+   N
Sbjct: 136 AVVH---LELDTGLSRGGARAEDWAELVAAARTAERDGTLSVRGVWTHLAWADVPAHPAN 192

Query: 176 --SVQLERFRTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
             +V       L +   G+E  L   +SS+ IL  P + F + R G++ YG    D +  
Sbjct: 193 LAAVAAFEEAVLAARAAGLEPELRHVSSSANILDRPEFAFDMVRAGLAFYGLAPADHLAP 252

Query: 229 SH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           +   ++  +T  A ++L++K  AG  VSY  Q        + +  +GYADG P  +SG  
Sbjct: 253 ADFGLRPALTVTAPVVLVKKVPAGTGVSYEHQAITHEPRYLGLIPLGYADGIPKGISGRS 312

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPD----IK 342
                 + LGG+       VP++GK+ MD  M D+  D+  + VGD   +FG        
Sbjct: 313 -----LILLGGR------RVPVIGKVCMDQFMVDLGPDANGVAVGDTAVLFGDPRTGAAS 361

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
            DD   A G+   +++ RI  R  + Y
Sbjct: 362 ADDWGAAIGSHGDEIINRIAPRLPRAY 388


>gi|46446265|ref|YP_007630.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 841

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 174/382 (45%), Gaps = 42/382 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L A+KNN   +   ++   R   ++K  AYG    ++   L   GV    V+ VEEGV
Sbjct: 470 INLAAIKNNLDMIRTKITPETRLMIIIKAFAYGTDDIQLGKFLSAYGVDILGVSYVEEGV 529

Query: 70  KLR-------LYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVS 121
            L+       ++T  A  + +  +   + ++ + D N I  ++   +     K   C   
Sbjct: 530 ALKRAGITLPIFTINAAQYEIAKVVKWELEVGVSDVNFISALAQEAK-----KSSKCIKV 584

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLE 180
           H   L ++TG  R G   +EAL+      +     L  I++H ACADDP        Q++
Sbjct: 585 H---LHINTGMGRFGCRPEEALNLALLITSSSHLILEGIMTHFACADDPRHDSFTQEQIQ 641

Query: 181 RFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
            F ++I   K   I+A     A+SSG +      + + R G++ YG  G+D + ++  ++
Sbjct: 642 CFDSVIEQLKRHCIQAKWTHAANSSGTIRFSLPQYNMVRIGLATYGLYGSDAVKQALDLR 701

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSP 292
             ++  +RI+ I     GE +SYG    + +++  IAV  +GY DG     SG       
Sbjct: 702 LALSLTSRIVGINHCRKGETISYGRNYLIEKENQTIAVLPVGYFDGLHRHYSG------- 754

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVA 347
                    I G   P++G I MD  M DITD     +GD + IFG D     +  +++A
Sbjct: 755 ----KAHVLIHGKKAPMVGSICMDYMMVDITDIPHANIGDKVLIFGEDEYGHYLSPEELA 810

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
           +   +  ++L+  +G R  + +
Sbjct: 811 MNGNSIVHELITCLGPRIQRIF 832


>gi|229917987|ref|YP_002886633.1| alanine racemase [Exiguobacterium sp. AT1b]
 gi|229469416|gb|ACQ71188.1| alanine racemase [Exiguobacterium sp. AT1b]
          Length = 362

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 162/361 (44%), Gaps = 37/361 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + IDL A++ N   + AL       AVVK+NAY LG E +   LY+ GV+ F VT++EE 
Sbjct: 3   VTIDLNAIRENKRRIEALG--RPVFAVVKNNAYNLGMEPVVTTLYDEGVRHFMVTTLEEA 60

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           +++R +   AR+ ++  ++  +     D ++   I S   L    + +     H   L++
Sbjct: 61  LEVRTHAESARVLIMNPVYTWEHVHAHDFDV--AIGSYEWLVSQREHLDGVRLH---LKL 115

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERF---R 183
           D G NR G  + +EAL       N+ L  + L  +H   AD  ++ V +SVQ+ERF    
Sbjct: 116 DVGMNRFGAKTFEEALRIVAFCQNEGLNLVGL-CTHFPLADADNAEVEHSVQVERFADWS 174

Query: 184 TLISHYKGIEASLASSSGILLGPN---YHFQLTRPGISLYGGTDKINKSHPMQTVVTA-- 238
           T +      E   A++S   L  +   +H    R GI LYG     +   P++ +V A  
Sbjct: 175 TRLMERHTFELIHAANSAATLQDDSRLHHCTHVRVGIFLYG----YSSVEPVEWLVPAFY 230

Query: 239 -EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E  ++ +    AG  V YG          IAV  +GY DG           H P     
Sbjct: 231 WETEVVAVHDIEAGAHVGYGTGYTAESKERIAVLPVGYGDGLMRA-----RRHLPV---- 281

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               I+G   P +  I M  +   + +   +++GD + ++G + K+DDV       N + 
Sbjct: 282 ---HIEGRAYPFVSNIFMSHSFIKVDE--DVQIGDRVALYGIETKIDDVTRVGYANNSEQ 336

Query: 358 L 358
           L
Sbjct: 337 L 337


>gi|239618030|ref|YP_002941352.1| alanine racemase [Kosmotoga olearia TBF 19.5.1]
 gi|239506861|gb|ACR80348.1| alanine racemase [Kosmotoga olearia TBF 19.5.1]
          Length = 372

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 162/378 (42%), Gaps = 32/378 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+IDL A K N           +  AVVK NAYG G   I+ A   +G+    V  +EEG
Sbjct: 8   LEIDLKAYKQNLEFFQRKVSPTKVMAVVKSNAYGHGAVGISKAAVESGIDMLAVAFLEEG 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQ 127
           ++LR +     I V     P    +  + NL     S+ Q+     ++   +      + 
Sbjct: 68  IELRNHGINVPILVFNYFDPEYSSLALENNLTITAYSIEQMKGIKSVLGNQIRKLKVHVN 127

Query: 128 VDTGFNRLGLSLQEALDFT----HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           VDTG  R+G S  E          N F+     +  I SH A AD+     +  Q + F 
Sbjct: 128 VDTGMKRIGPSANECTSLIEYLLENGFS-----IEGIYSHFAVADEAIEQFSIEQRKAFE 182

Query: 184 TLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVVT 237
           + +     KGI+     L +S+G L      +   R GI+ YG     +   P ++ V+T
Sbjct: 183 SAVKTLESKGIKIPVKHLCNSAGSLRFNREEYNYIRLGIASYGLQPSGDFVIPELKPVLT 242

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++ +  ++    G+ VSYG      R  +++   +GY DGY   LS     +   V +G
Sbjct: 243 WKSAVSYVKTLKPGDSVSYGRTFIADRKMVVSTVPVGYGDGYSRGLS-----NRGEVLIG 297

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD----IKLDDVALASGT 352
           GK         ILG++ MD  + D+T      ++GD + + G      I ++++A    T
Sbjct: 298 GK------RCKILGRVCMDQFVVDVTHLHKKPKIGDEVVLIGSQGEERITVEEIADLLNT 351

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY++   I  R  + YT
Sbjct: 352 INYEITCTITARVPRLYT 369


>gi|228474910|ref|ZP_04059639.1| alanine racemase [Staphylococcus hominis SK119]
 gi|314935973|ref|ZP_07843323.1| alanine racemase [Staphylococcus hominis subsp. hominis C80]
 gi|228271142|gb|EEK12522.1| alanine racemase [Staphylococcus hominis SK119]
 gi|313655979|gb|EFS19721.1| alanine racemase [Staphylococcus hominis subsp. hominis C80]
          Length = 381

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 169/379 (44%), Gaps = 40/379 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  N++    L  +     V+K N YGLG  KIA  L N G Q F V +++E 
Sbjct: 11  LNVDLDAILYNYNIFKTLQSDKLVIPVIKANGYGLGSVKIAEILENNGAQFFAVATLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSK---LMSCGVSHP 123
           ++LRL+   A++ VL  I P    + I +D  L     +VP   +  +    +     H 
Sbjct: 71  IELRLHNINAKLLVLGAISPKDINKAIQYDITL-----TVPSQFWLERAIHYIEDNSDHV 125

Query: 124 YA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-SLIISHLACADDPSSHVNSVQLER 181
           Y  +++DTG  RLG+   E      N   +    +   + +H A AD+P   +   Q   
Sbjct: 126 YLHVKLDTGMGRLGIKTLEEYQLVINLIKEHPTLIFDGVFTHFANADEPGDSMKQ-QYAF 184

Query: 182 FRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVV 236
           F  L++     K I A   +S+G LL         R GISLYG   ++ +     +Q   
Sbjct: 185 FEELVTKAERPKYIHAQ--NSAGALLANCKLCNALRLGISLYGYYPSEYVRNEVDVQLKP 242

Query: 237 TAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +A+   +++  +    G+ VSYG     T    IAV  IGYADG+   + G         
Sbjct: 243 SAKLMTQVVQTKYLNPGDSVSYGSTFTATEKMKIAVLPIGYADGFLRAMQGFAVN----- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVALAS 350
                  +  +   I+G++ MD  +  + D   ++ GD + +   ++     ++ +A+  
Sbjct: 298 -------VNQHQCEIIGRVCMDQMIISVPD--DVKEGDEVILIDNNLNSSQAVEALAIKQ 348

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++L  +G R  + Y
Sbjct: 349 NTINYEVLCNLGRRLPRIY 367


>gi|146296075|ref|YP_001179846.1| alanine racemase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409651|gb|ABP66655.1| alanine racemase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 387

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 166/357 (46%), Gaps = 29/357 (8%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
           N +  AVVK +AYG G  +++  L   G+    V  ++E ++LR Y     I +L G  P
Sbjct: 30  NTQIMAVVKADAYGHGAIEVSRVLVRNGINMLAVAIIDEALQLRHYNFDIPILIL-GFTP 88

Query: 89  GQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQVDTGFNRLG-LSLQEALD 144
            +  E+++ + ++   + +  Q  + ++            ++VDTG  R+G L  +E+++
Sbjct: 89  FELSEQVV-ENDISQTVYTFEQAYYLNEAAKKIGKKAKVHIKVDTGMGRIGFLCTKESIE 147

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTLISHY--KGI---EASLAS 198
                 +    +L  I SH + ADDP S +    Q  RF   +      G+      +A+
Sbjct: 148 TIIRIASLSHIELEGIFSHFSSADDPQSDNFTYEQFLRFENFVKELNKNGVYFKYRHIAN 207

Query: 199 SSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIILIRKALAGELVSY 256
           S+  +  P Y   + R G+ LYG   ++ +     ++ V++ +A++I +++   G  +SY
Sbjct: 208 SAAAIRFPQYQLDIVRLGLVLYGLYPSEAVKTEISLKPVMSVKAKVINVKEVPEGYPISY 267

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
             +      S IA   IGYADG+  T  G +  +           I G    ++G + MD
Sbjct: 268 NRKYVTPCKSKIATIPIGYADGF--TRVGSEKRYV---------LINGEYAKVVGNVCMD 316

Query: 317 MTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             M D+T    +++GD + I G     +I  DD+A   GT NY+++  +  R  + Y
Sbjct: 317 QCMVDVTHIRDVKIGDEVVIIGKQGKNEITADDLASQIGTINYEVICSVSKRIPRVY 373


>gi|229017415|ref|ZP_04174318.1| Alanine racemase [Bacillus cereus AH1273]
 gi|228743978|gb|EEL94077.1| Alanine racemase [Bacillus cereus AH1273]
          Length = 408

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 166/380 (43%), Gaps = 34/380 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHP 123
           E ++LR       I +L    +   ++ I +D  + +  I  +  +   +  +   V   
Sbjct: 88  EAIELREAGITVPILILGYTSVAAVEDAIQYDVMMTVYRIEDLQSINEIANRLQKKVQ-- 145

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F 
Sbjct: 146 IQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADETDKAYTNMQTSLFE 205

Query: 184 TLIS-------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQ 233
             ++       H+  I +S  +S+G +   N    + R GI +YG        H    ++
Sbjct: 206 KAVNTAKELGIHFPYIHSS--NSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHTVVALK 263

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ ++++  ++ A     VSYG     T +  IA   IGYADGY   LS         
Sbjct: 264 PALSLKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-------- 315

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS--- 350
               G   I G  VP++G++ MD  M DIT ++ ++VGD +  +G   + +         
Sbjct: 316 ---KGHALINGVRVPVIGRVCMDQLMLDITKAMPVQVGDEVVFYGKQGEEEIAVEEVADM 372

Query: 351 -GTTNYDLLVRIGTRYAKFY 369
            GT NY++   +  R  + Y
Sbjct: 373 LGTINYEVTCMLDRRIPRVY 392


>gi|290892923|ref|ZP_06555913.1| alanine racemase [Listeria monocytogenes FSL J2-071]
 gi|290557499|gb|EFD91023.1| alanine racemase [Listeria monocytogenes FSL J2-071]
          Length = 368

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 164/377 (43%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYA 125
            + LR    Q    ++ G    ++  +   N I        LT + +  L    +  P  
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHI-------SLTVFREDWLEDLTLEAPLR 123

Query: 126 --LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G   PI+G++ MD T+  +      + G  + I G D    I  DD A    T
Sbjct: 296 ----LVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNTITADDAAQYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|291557577|emb|CBL34694.1| alanine racemase [Eubacterium siraeum V10Sc8a]
          Length = 379

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 172/376 (45%), Gaps = 33/376 (8%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           N FL+    +IDL AL++N++ +  L+      AVVK NAYG   + +   L   GV+ +
Sbjct: 2   NRFLKRAWAEIDLDALEHNYNEIKKLAKGKDILAVVKANAYGHDDKAVCLKLQELGVKYY 61

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLMS 117
            V+++ EG KLR +     I             + +  +     SV    QL+ Y+  +S
Sbjct: 62  GVSNLWEGEKLRQHGITGTILTFGYTDEDYFDELLEYGITQTAGSVQYAKQLSDYA--VS 119

Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALD-FTHNSFNKKLGQLSLIISHLACAD--DPSSH 173
            GV  P  ++V+TG  R+G+ S QE LD       + K        +H A AD  DPS  
Sbjct: 120 KGVKLPVHIKVNTGMTRVGIDSQQEMLDILAMPGLDCKAA-----YTHFAAADSLDPSDV 174

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-- 231
             + + +     I+  KG+     +S GI+   ++   + R G+ LYG         P  
Sbjct: 175 EYTDRQQEKLMKIAKDKGLFIHSQNSGGIIYHGDFGGDIVRAGVILYGHYPNYPLEVPFD 234

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           M++V+T ++ +  ++   AG  +SYG      ++  +AV  IGYADGY    S       
Sbjct: 235 MKSVMTVKSVVSQLKTIPAGTQISYGRTYTAEKEMTVAVIPIGYADGYFRDFSS------ 288

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK---LDDVAL 348
                 GK  I G +  ++G++ MD T+ D+++   I+ GD + ++    +   +D  A 
Sbjct: 289 -----KGKMLINGVLCNVVGRVCMDQTIVDVSNVPDIKTGDIVYVYSDKCRETSVDYNAS 343

Query: 349 ASGTTNYDLLVRIGTR 364
              T  Y+L   +  R
Sbjct: 344 LIDTIGYELTCAVALR 359


>gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 827

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 177/376 (47%), Gaps = 33/376 (8%)

Query: 9   LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL A+ +N  +  + L    +  A+VK   YG+G  ++A  L    V    V   +E
Sbjct: 467 LEVDLDAVAHNLQYYRSKLPQGTQCIAMVKAQGYGVGAYEVAKKLDQMHVGALAVAVADE 526

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSH-PYA 125
           G +LR     + I V+    P     + + +L PV+ S   L    +K+   G  +    
Sbjct: 527 GRELRSQGILSPILVM-NPEPTAFDTLLEWHLEPVVFSWKLLRALANKIDKQGFDNIGVH 585

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERFRT 184
           ++VDTG +RLG    E  +         L +   I +HLA AD P        QLE FRT
Sbjct: 586 IEVDTGMHRLGFRPDEIPELARFFAQSHLLRARSIFTHLAAADMPEEDAFTRNQLEVFRT 645

Query: 185 L------ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                  I+ Y+ +  +L +++G+   P Y F   R GI LYG +  ++K   ++  V  
Sbjct: 646 TADQFSEIAGYRPLYHAL-NTAGVERFPQYAFDCVRLGIGLYGISPSMDKH--LEPAV-- 700

Query: 239 EARIILIRKA-LAG-ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             R  L++K+ ++G E + YG +  LT+   I +  IGYADGY   +S            
Sbjct: 701 RLRTTLLQKSYISGDETIGYGRRGHLTQGGEIGIIPIGYADGYSRRMS------------ 748

Query: 297 GGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTT 353
            G+G+  + G   PI+G + MD  M D++     + GD + +FG  + +++D+A A  T 
Sbjct: 749 CGRGWVVVHGKRCPIVGNVCMDTCMIDLSQCPEAQEGDEVILFGDKEARIEDLARAIDTI 808

Query: 354 NYDLLVRIGTRYAKFY 369
            Y+L+  +  R  + Y
Sbjct: 809 PYELIADLAPRVRRVY 824


>gi|1942328|pdb|1SFT|A Chain A, Alanine Racemase
 gi|1942329|pdb|1SFT|B Chain B, Alanine Racemase
 gi|3891941|pdb|1BD0|A Chain A, Alanine Racemase Complexed With Alanine Phosphonate
 gi|3891942|pdb|1BD0|B Chain B, Alanine Racemase Complexed With Alanine Phosphonate
          Length = 388

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 163/386 (42%), Gaps = 39/386 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N+F R    ++DL A+ +N  ++  L   +    AVVK NAYG G  ++A     AG   
Sbjct: 2   NDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASR 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR    +A I VL    P    +     +   +     L   S L S  
Sbjct: 62  LAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGP 121

Query: 120 VSHPYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + L++DTG  RLG+  +E      AL   H  F      L  + +H A AD+ ++ 
Sbjct: 122 FPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHF-----VLEGLYTHFATADEVNTD 176

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTD----KIN 227
             S Q  RF  ++            A+S+  L  P+  F + R GI++YG       K  
Sbjct: 177 YFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPL 236

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P++   +  +R++ ++K   GE VSYG       +  I    IGYADG+   L  L 
Sbjct: 237 LPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGW---LRRLQ 293

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             H           + G   PI+G+I MD  M  +   L   VG  + + G      I +
Sbjct: 294 HFHV---------LVDGQKAPIVGRICMDQCMIRLPGPLP--VGTKVTLIGRQGDEVISI 342

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DDVA    T NY++   I  R  + +
Sbjct: 343 DDVARHLETINYEVPCTISYRVPRIF 368


>gi|2506170|sp|P10724|ALR_BACST RecName: Full=Alanine racemase
          Length = 388

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 163/386 (42%), Gaps = 39/386 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N+F R    ++DL A+ +N  ++  L   +    AVVK NAYG G  ++A     AG   
Sbjct: 2   NDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASR 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR    +A I VL    P    +     +   +     L   S L S  
Sbjct: 62  LAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGP 121

Query: 120 VSHPYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + L++DTG  RLG+  +E      AL   H  F      L  + +H A AD+ ++ 
Sbjct: 122 FPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHF-----VLEGLYTHFATADEVNTD 176

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTD----KIN 227
             S Q  RF  ++            A+S+  L  P+  F + R GI++YG       K  
Sbjct: 177 YFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPL 236

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P++   +  +R++ ++K   GE VSYG       +  I    IGYADG+   L  L 
Sbjct: 237 LPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGW---LRRLQ 293

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             H           + G   PI+G+I MD  M  +   L   VG  + + G      I +
Sbjct: 294 HFHV---------LVDGQKAPIVGRICMDQCMIRLPGPLP--VGTKVTLIGRQGDEVISI 342

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DDVA    T NY++   I  R  + +
Sbjct: 343 DDVARHLETINYEVPCTISYRVPRIF 368


>gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13]
 gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13]
          Length = 821

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 171/376 (45%), Gaps = 35/376 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N++   + L    +   +VK   YG G  ++A  L         V   +E
Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGV-SHP 123
           G +LR       I V+   +P      ++F+ +L P + S   L     +    G+ S+P
Sbjct: 523 GAELRKEGISIPIIVM---NPEFSSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD----DPSSHVNSVQL 179
             +++DTG +RLG   ++          +       + SHLA +D    D  +H    QL
Sbjct: 580 IHIKIDTGMHRLGFQPEDVPAICERLIAQSGVIARSVFSHLAGSDSYVFDDFTHQ---QL 636

Query: 180 ERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           ++F            YK I+  L +S+GI     Y   + R GI LYG +    K   ++
Sbjct: 637 DKFTKAAGELESGLEYKVIKHIL-NSAGIERFAAYQMDMVRLGIGLYGVSASGQKG--LR 693

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V T +  I+ I+   AG+ + Y     + RDS IA+  IGYAD       GLD   S  
Sbjct: 694 NVSTLKTTILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYAD-------GLDRHFSNG 746

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              GG+  I G   PI+G I MD  M D+TD+ + E GD + IFG ++ + +++    T 
Sbjct: 747 ---GGEVLINGQRCPIIGNICMDACMIDVTDTHAQE-GDAVIIFGDELPVSELSDKLKTI 802

Query: 354 NYDLLVRIGTRYAKFY 369
            Y++L  I  R  + Y
Sbjct: 803 PYEILTSISPRVKRVY 818


>gi|322437297|ref|YP_004219509.1| alanine racemase [Acidobacterium sp. MP5ACTX9]
 gi|321165024|gb|ADW70729.1| alanine racemase [Acidobacterium sp. MP5ACTX9]
          Length = 375

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 168/384 (43%), Gaps = 50/384 (13%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +ID  AL  N+ ++  ++G A   AV+K  AYG G E+ AP L  AG +   VT   EG 
Sbjct: 6   EIDAAALTANYKAIQRVAG-AEVLAVIKARAYGHGAERCAPILVRAGARWLGVTCASEGQ 64

Query: 70  KLRLYTP----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           ++R        +A I V+ G  P     I   +LIPVI +   +   + +  C V     
Sbjct: 65  QVRAALDHAGLEADILVMSGSLPKDVPAIVSAHLIPVIWTTDHIDLLAGI-GCRVH---- 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++VDTG  R G+   + L       +    +L  + +H   ++  +S++   Q   F   
Sbjct: 120 VEVDTGMGRQGVRPGQDLATLLARISAAGLRLDGLFTHFCSSEVANSNLTLRQRALFEAA 179

Query: 186 ISHYKGIEASL-------ASSSGI---------------LLGPNYHFQLTRPGISLYGGT 223
           +   + + A L       A+SS +               L        + R G++LYG  
Sbjct: 180 VQ--QTVTAGLTPAWLHAANSSAVDNETPEPSSGDWLTTLAAAAGSQTMVRTGLALYGYC 237

Query: 224 DKINK------SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
             I        S  +Q V+T +ARI+ +R    G+ V Y           +A+  +GYAD
Sbjct: 238 LPIEGGALHHLSPALQPVLTWKARILAVRDLAPGDTVGYNATFIAGPAMKVALLPVGYAD 297

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           G    LS     H       G   ++G+  PILG+I+M++T+ D+T   +   GD   + 
Sbjct: 298 GLRRELS---HPH-------GWVMVQGHPAPILGRISMNLTVVDVTAIPAASAGDEATLL 347

Query: 338 GPDIKLDDVALASGTTNYDLLVRI 361
           GP I  +D A  + T +Y++L  I
Sbjct: 348 GPGITAEDHARLARTISYEILCGI 371


>gi|254832148|ref|ZP_05236803.1| hypothetical protein Lmon1_12409 [Listeria monocytogenes 10403S]
 gi|3414683|gb|AAC31362.1| alanine racemase [Listeria monocytogenes]
          Length = 368

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 163/377 (43%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  +    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    Q    ++ G    ++  +   N I +       +  LT  + L        
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLENLTLEATLR------- 123

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G   PI+G++ MD T+  +      + G  + I G D    +  DD A    T
Sbjct: 296 ----LVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTVTADDAAQYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|297562974|ref|YP_003681948.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296847422|gb|ADH69442.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 376

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 168/384 (43%), Gaps = 32/384 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + F   ++DL A+ +N   +   +G      VVK + YG G    A AL   G       
Sbjct: 2   SHFAHARVDLDAISHNARVLRGFAGGTPLMGVVKADGYGHGMLPAARALIAGGATWLGTA 61

Query: 64  SVEEGVKLRL--YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGV 120
            + E ++LR    TP    +++    P  E +  D +L   +S    L T  ++    G 
Sbjct: 62  FIGEALELRRAGLTPPVLAWIIPPGEPVAEAVEADIDL--GVSDRAVLDTVIAEARRIGR 119

Query: 121 SHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV 177
           +    L+ DTG NR G+   +        +  +  G L +  + SH ACAD+P     + 
Sbjct: 120 TARVQLKADTGLNRGGVGPADWGALAEAAARAEDEGHLRVTGVWSHFACADEPGHPSVAR 179

Query: 178 QLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHP 231
           QL RF   +     +  +     +A+S+ +L  P   F L R GI+ YG +         
Sbjct: 180 QLSRFHEALETADKVGLTPEVRHIANSAALLTLPEARFDLVRGGIASYGLSPIPGLTGTG 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T  +R+ L ++   G  VSYG +    R++ +A+  +GYADG P   +     + 
Sbjct: 240 LRPAMTLRSRLALTKRVPEGSGVSYGHRYVTDRETTLALVPLGYADGVPRAAT-----NR 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-----PDIKL-DD 345
             V LGG+         + G + MD  + D+ D  ++E G+Y  +FG     PD    +D
Sbjct: 295 GPVLLGGR------RRAVAGTVCMDQFVVDVGDD-AVEAGEYAVLFGNPEDHPDTPTAED 347

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T  Y+++ R+G R  + Y
Sbjct: 348 WAEILDTIPYEIVTRVGPRVPREY 371


>gi|217032731|ref|ZP_03438215.1| hypothetical protein HPB128_158g10 [Helicobacter pylori B128]
 gi|298736103|ref|YP_003728628.1| alanine racemase [Helicobacter pylori B8]
 gi|216945547|gb|EEC24202.1| hypothetical protein HPB128_158g10 [Helicobacter pylori B128]
 gi|298355292|emb|CBI66164.1| alanine racemase [Helicobacter pylori B8]
          Length = 377

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 179/382 (46%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR + P+  I +L G  P     ++ D +L  ++ S+ Q   +S++ +         
Sbjct: 68  ALELRSHFPKTPILIL-GYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKAKKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++++ +S P  
Sbjct: 187 FLEQLLNQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L        
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLARALGNRI---- 302

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
                  +  I   + P++GK+ MD     + D  + E GD + +FG    K +D   +A
Sbjct: 303 -------QVVINNQLAPLIGKVCMDQCFVKLNDIQAKE-GDEVILFGDKSAKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 TLLNTIAYETISTLSKRLERVY 376


>gi|291530912|emb|CBK96497.1| alanine racemase [Eubacterium siraeum 70/3]
          Length = 379

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 172/376 (45%), Gaps = 33/376 (8%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           N FL+    +IDL AL++N++ +  L+      AVVK NAYG   + +   L   GV+ +
Sbjct: 2   NRFLKRAWAEIDLDALEHNYNEIKKLAKGKDILAVVKANAYGHDDKAVCLKLQELGVKYY 61

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLMS 117
            V+++ EG KLR +     I             + +  +     SV    QL+ Y+  +S
Sbjct: 62  GVSNLWEGEKLRQHGITGTILTFGYTDEDYFDELLEYGITQTAGSVQYAKQLSDYA--VS 119

Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALD-FTHNSFNKKLGQLSLIISHLACAD--DPSSH 173
            GV  P  ++V+TG  R+G+ S QE LD       + K        +H A AD  DPS  
Sbjct: 120 KGVKLPVHIKVNTGMTRVGIDSQQEMLDIIAMPGLDCKAA-----YTHFAAADSLDPSDV 174

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-- 231
             + + +     I+  KG+     +S GI+   ++   + R G+ LYG         P  
Sbjct: 175 EYTDRQQEKLMKIAKDKGLLIHSQNSGGIIYHGDFGGDIVRAGVILYGHYPNYPLEVPFD 234

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           M++V+T ++ +  ++   AG  +SYG      ++  +AV  IGYADGY    S       
Sbjct: 235 MKSVMTVKSVVSQLKTIPAGTQISYGRTYTAEKEMTVAVIPIGYADGYFRDFSS------ 288

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK---LDDVAL 348
                 GK  I G +  ++G++ MD T+ D+++   I+ GD + ++    +   +D  A 
Sbjct: 289 -----KGKMLINGVLCNVVGRVCMDQTIVDVSNVPDIKTGDIVYVYSDKCRETSVDYNAS 343

Query: 349 ASGTTNYDLLVRIGTR 364
              T  Y+L   +  R
Sbjct: 344 LIDTIGYELTCAVALR 359


>gi|15827104|ref|NP_301367.1| alanine racemase [Mycobacterium leprae TN]
 gi|221229582|ref|YP_002502998.1| alanine racemase [Mycobacterium leprae Br4923]
 gi|584747|sp|P38056|ALR_MYCLE RecName: Full=Alanine racemase
 gi|467127|gb|AAA17309.1| alr [Mycobacterium leprae]
 gi|13092652|emb|CAC29883.1| putative alanine racemase [Mycobacterium leprae]
 gi|219932689|emb|CAR70468.1| putative alanine racemase [Mycobacterium leprae Br4923]
          Length = 388

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 177/382 (46%), Gaps = 42/382 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+  N   +   +G A+   V+K +AYG G  ++A A   AG  +  V +V+E + 
Sbjct: 18  VDLGAIDYNVRVLREHAGMAQLMVVLKADAYGHGATQVALAALAAGAAELGVATVDEALA 77

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP----VISSVPQL-TFYSKLMSCGVSHPYA 125
           LR     A   VL  +HP    I F   L+      +SSV QL      +   G +    
Sbjct: 78  LRADGISAP--VLAWLHP--PGIDFGPALLADVQIAVSSVRQLDELLDAVRRTGRTATVT 133

Query: 126 LQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++ DTG NR G+   +    L     +  +   +L  ++SHL  AD P +  N VQ +RF
Sbjct: 134 VKADTGLNRNGVVTDQYPAMLTALQRAVVEDAVRLRGLMSHLVYADQPDNPSNDVQGKRF 193

Query: 183 RTLI--SHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQ 233
             L+  +H +G+    A L++SS  +  P+  + L RPGI++YG +   ++      P  
Sbjct: 194 AALLAQAHEQGLRFEVAHLSNSSATMSRPDLAYDLVRPGIAVYGLSPVPSRGDMGLIPAM 253

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDSEHSP 292
           TV  A A +  IR   AGE VSYG       D+ +A+  +GYADG   +L G LD     
Sbjct: 254 TVKCAVAMVKSIR---AGEGVSYGHDWIAQHDTNLALLPVGYADGVFRSLGGRLDV---- 306

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK----LDDVA 347
                    I G   P +G+I MD  + D+    + +  GD   +FGP  +      D A
Sbjct: 307 --------LINGKRRPGVGRICMDQFVVDLGPGPIDVAEGDEAILFGPGARGEPTAQDWA 358

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT +Y+++  +  R  + Y
Sbjct: 359 DLLGTIHYEVVTSLRGRITRTY 380


>gi|242371567|ref|ZP_04817141.1| alanine racemase [Staphylococcus epidermidis M23864:W1]
 gi|242350719|gb|EES42320.1| alanine racemase [Staphylococcus epidermidis M23864:W1]
          Length = 382

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 173/389 (44%), Gaps = 59/389 (15%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ++L A+  N+   + L  N    +V+K N+YGLG  +IA  L   G   F V +++E 
Sbjct: 11  LNVNLDAILANYQIFDQLHHNKTVISVIKANSYGLGSVRIAQHLMEHGASFFAVATLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPG------QEKIIF----DTNLIPVISSVPQ-----LTFYS 113
           ++LR++  +A+I +L  I         Q ++         L   I ++P+     L  ++
Sbjct: 71  IELRMHGIKAKILILGVIRTEDISKAIQHRVALTVPSKAWLKEAIKNIPEDNEKKLWLHA 130

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-SLIISHLACADDPSS 172
           KL             DTG  RLG+   E      +  +K+   +   + +H A AD+P  
Sbjct: 131 KL-------------DTGMGRLGMKDVEEYREVVDLIDKREHLVFEGVYTHFASADEPGD 177

Query: 173 HVNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSH 230
            +N  Q E F+T+++   K       +S+  LL         R GISLYG    +  K H
Sbjct: 178 SMNE-QFEFFKTVVNQVEKPTYIHTQNSAASLLMDGQFCNAIRLGISLYGYYPSQYVKDH 236

Query: 231 ------PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
                 P   +V+    I+ ++   AGE VSYG   K T +  IA+  IGYADGY   + 
Sbjct: 237 VKVHLRPSAQLVS---EIVQVKTLKAGETVSYGRTFKATEEMRIAILPIGYADGYLRAMQ 293

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--- 341
           G         ++     + G+   ++G++ MD T+  + +   ++VGD + +    I   
Sbjct: 294 G--------AYVN----VNGHQCEVVGRVCMDQTILRVPE--DVKVGDKVILMDNHIDSP 339

Query: 342 -KLDDVALASGTTNYDLLVRIGTRYAKFY 369
              + +A    T NY++L  I  R  + Y
Sbjct: 340 QSAEALAEKQQTINYEVLCNISRRLPRIY 368


>gi|89897688|ref|YP_521175.1| hypothetical protein DSY4942 [Desulfitobacterium hafniense Y51]
 gi|89337136|dbj|BAE86731.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 394

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 160/366 (43%), Gaps = 58/366 (15%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + I+L A+ NN+  +   LS  AR  AVVK +AYGLG   +A  L   G   F VT+VEE
Sbjct: 6   IDINLDAIANNYREVTQQLSPAARVMAVVKADAYGLGAVPVAQTLQKLGCPAFAVTTVEE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           G+ LR +  +  I VL  +   Q      ++L   +S    L  +  + +  G+     L
Sbjct: 66  GLMLRQHGVEGIILVLGPVSAEQMAEALASDLQLTLSDFHMLREWETVAAGLGMEAKVHL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL------------IISHLACADDPSSHV 174
           +++TG  R G             F K+ G+L+             + +HLA A       
Sbjct: 126 KLETGMGRTGF------------FEKEWGELAAQLKQSPHITPVGVYTHLARAAQRDRAY 173

Query: 175 NSVQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
              Q+E F+  ++      + G+   + +S+  L  P++H+   R G  L G        
Sbjct: 174 TRQQVESFQRGVNLLEEQGFAGLWKHVCNSAAFLDYPDWHYDFIRTGTLLIGHFPAPAFA 233

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q    A+ARI+ +R+   G  V Y    +   ++ +AV  +GYADG+     G+ 
Sbjct: 234 GKLTLQDPWVAKARIVSLRRVPKGTFVGYQSIYRTKAETQLAVIPVGYADGF-----GVQ 288

Query: 288 SEHSPS------------------VFLGGKGFI-KGYMVPILGKITMDMTMFDITDSLSI 328
               P                   +++G +  I +G+ VP+ GKI M +T+ D+ + LS 
Sbjct: 289 PHFVPQGVWDFIKIVIKNFLALCRIYIGQETVILQGHRVPVAGKIGMQLTVLDVGN-LSC 347

Query: 329 EVGDYI 334
           E GD +
Sbjct: 348 ETGDEV 353


>gi|254492138|ref|ZP_05105313.1| alanine racemase [Methylophaga thiooxidans DMS010]
 gi|224462690|gb|EEF78964.1| alanine racemase [Methylophaga thiooxydans DMS010]
          Length = 334

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 162/345 (46%), Gaps = 30/345 (8%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           +V+K +AYG G    A AL  +    F V  ++EGV LR    +  I +L G++  Q+ I
Sbjct: 2   SVIKADAYGHGAITAAEALKESDA--FAVARLKEGVFLRQKGVEHPIVLLEGVNTEQDFI 59

Query: 94  IF-DTNLIPVISSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGL---SLQEALDFT 146
              +  L PVI    Q+     L +  +  P A   L VD+G +RLG+    ++ AL   
Sbjct: 60  TASEYQLSPVIHLHSQIQL---LQTLTLPKPLAFNWLMVDSGMHRLGIRPEQVEMALTLL 116

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGP 206
             S N   G++ L+ SH A +D      N  QL     L  H   +   LA+S+ ++   
Sbjct: 117 AESSNIS-GEVGLM-SHFANSDLDGDPRNQKQLAHMLAL-KHKTSLPLCLANSAAVICLA 173

Query: 207 NYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
             H Q  RPG+ LYG +   DK      ++ V+T + ++I +     G+ V YGG+    
Sbjct: 174 ESHQQWVRPGLMLYGVSPFSDKSGTELGLKPVMTLKTQLIAVYDLEVGDQVGYGGEWTAE 233

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
             + I VA+IGY DGY   LS              +  I+G   P++G+++MD    ++ 
Sbjct: 234 VPTRIGVASIGYGDGYSRHLSN-----------KAEVIIRGIKAPVIGRVSMDTICINLN 282

Query: 324 DSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLLVRIGTRYAK 367
                E GD + ++G  ++ ++ +A  + T  Y+L+  +  R  K
Sbjct: 283 HVEQAETGDDVIVWGTANLAVEQLATLAETIPYELVTVLCQRVNK 327


>gi|195941892|ref|ZP_03087274.1| alanine racemase (alr) [Borrelia burgdorferi 80a]
          Length = 372

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 155/352 (44%), Gaps = 28/352 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 32  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 91

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 92  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 149

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 150 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 207

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++  I+    GE +S
Sbjct: 208 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVTFIKNVKKGEKIS 267

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 268 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 316

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++ + +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG +Y K
Sbjct: 317 NLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG-KYEK 367


>gi|257785044|ref|YP_003180261.1| alanine racemase [Atopobium parvulum DSM 20469]
 gi|257473551|gb|ACV51670.1| alanine racemase [Atopobium parvulum DSM 20469]
          Length = 384

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 180/400 (45%), Gaps = 55/400 (13%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            + +  ++IDL+A+++N  +  A L+   +   VVK +AYG G  + A A+ + G   F 
Sbjct: 6   QDRWAWIEIDLSAVRHNVKAFKAQLNRGVKLMCVVKADAYGHGAAQCAKAMQSVGADQFA 65

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVP-QLTFYSKLMSC 118
           V +V+EGV+LR    ++ I VL    P    I  +   +++P + +V   L +     + 
Sbjct: 66  VATVDEGVELRCSGIESPILVLS--EPPVTSIPDLVRFDIMPSVYTVDFALAYGEASAAA 123

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSV 177
                Y L +DTG  R+G+  ++ L+   +  F++ L + +   +H A AD   +    +
Sbjct: 124 NKVGRYHLAIDTGMTRIGVRREDLLEVRGSIDFHRGL-ECAGTFTHFATADVLDNWDFDL 182

Query: 178 QLERFRTLISHYK--GIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP- 231
           Q+ RF   I+  K  G E  L    ++ G +L  +  F + R GI LYG        HP 
Sbjct: 183 QVNRFVEAITALKNAGYELGLVHADNTPGTILHKDIQFDMVRVGIGLYG-------LHPS 235

Query: 232 --------MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLT 282
                   +Q V++   R+  +     G+ V YG   ++ R+++ +A   IGYADG    
Sbjct: 236 KLTIPRIDLQLVMSVRGRVTRVVYPAVGDGVGYGMTWRVPRNNIQVATVPIGYADGLARN 295

Query: 283 LSG-LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS--------LSIEVGDY 333
           LS  +D               +G  V  +G I MD  M  +  +          I  GD 
Sbjct: 296 LSNRMDV------------LARGSRVRQVGNICMDQFMIAVDTTGARANKPVYEICYGDV 343

Query: 334 IQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + + G D    I +D++A    T NY+++   G R  K Y
Sbjct: 344 VTLIGKDGDQEITVDEMADLRETINYEVVCNFGARLDKVY 383


>gi|146743646|gb|ABQ43054.1| alanine racemase [Borrelia burgdorferi N40]
 gi|312149466|gb|ADQ29537.1| alanine racemase [Borrelia burgdorferi N40]
          Length = 372

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 156/352 (44%), Gaps = 28/352 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 32  GEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 91

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 92  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 149

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 150 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHTSNS 207

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++  I+    GE +S
Sbjct: 208 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVTFIKNVKKGEKIS 267

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 268 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 316

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++T+ +I   L ++ G  ++I    + +++++  S  ++Y+LL  IG +Y K
Sbjct: 317 NLTIVEIPKDLKVKTGSKVEIVSEKLSINEMSKFSKRSHYELLCNIG-KYEK 367


>gi|205372263|ref|ZP_03225077.1| alanine racemase [Bacillus coahuilensis m4-4]
          Length = 367

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 150/363 (41%), Gaps = 41/363 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L+ +    AVVK N YG G  ++A A   AG     V  ++E + LR +     I VL  
Sbjct: 2   LTDDVEAFAVVKANGYGHGDIQVAKAALQAGANGIAVAFLDEAINLREHGVTEPILVLGA 61

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH------PYALQV--DTGFNRLGL 137
             P   ++  +  +         LT Y +     V H      P AL +  DTG NRLGL
Sbjct: 62  TRPEYARVAAEKGI--------SLTVYEESWIQEVKHFTPFTNPLALHIKCDTGMNRLGL 113

Query: 138 SLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
              EAL              L  + +H A +D+        Q+  F   +   K     +
Sbjct: 114 KSVEALMRMEEEIESNSSLVLEGVFTHFATSDEIERSYTKRQIALFHDYLHALKKRPRYV 173

Query: 197 --ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEARIILIRKALA 250
              +S G L      F + R GI++YG T     +H +      +++   +I+ I++   
Sbjct: 174 HAGNSGGALRFSEAKFNMVRIGIAMYGLTPSPEITHELTVSLSPIMSIHTKIVHIKELPK 233

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           GE +SYG   +   +  IA   IGYADG+   L G +              ++G  VPI+
Sbjct: 234 GEKISYGATYETQDNEWIATIPIGYADGWLRKLQGQEV------------LVEGERVPIV 281

Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYA 366
           G+I MD  M  +     + VG  + + G      I ++++A    T NY++   I TR  
Sbjct: 282 GRICMDQCMIKLPR--EVPVGTIVTLIGTQGSETITMEEIADKMDTINYEVPCIISTRVP 339

Query: 367 KFY 369
           + Y
Sbjct: 340 RVY 342


>gi|269218932|ref|ZP_06162786.1| alanine racemase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212043|gb|EEZ78383.1| alanine racemase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 382

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 172/379 (45%), Gaps = 36/379 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEG 68
           +IDL+A+++N  S+   +G A   AVVK +AYG G  ++A AL  A   D+     + E 
Sbjct: 19  RIDLSAIRSNLSSVREAAGEAAVLAVVKADAYGHGRAEVARALAPAA--DYLGAAQLGEA 76

Query: 69  VKLRLYT-PQARI--FVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPY 124
           + LR    P  RI  ++     P  + +  D  L      ++ ++   ++    G +   
Sbjct: 77  LALREEVGPGPRILTWIFAPGAPLAQALRADVELSAGAFWAIDEIARAAR--ETGTTAKV 134

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACADDPSSHVNSVQLER 181
            L+VDTG  R G +L +  + +      +   L  ++   SHLA AD+P S     Q+ER
Sbjct: 135 HLKVDTGMARGGFNLADVAEASRRLRALQADGLFSVVGLWSHLARADEPESGATERQIER 194

Query: 182 FRTL--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F      +  +GIE     LA+S G L  P   + + RPGI LYG +     +   +  +
Sbjct: 195 FEQARAAARSEGIEPEILHLAASGGALWHPAARYDMVRPGIVLYGLSPNPEVATARELGL 254

Query: 237 TA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           T      A +IL R   A   +SYG  +K    + + V  +GY DG P            
Sbjct: 255 TPAMELSASLILERGVPAQTPISYGHTEKTEAPTRLGVVPLGYGDGIPR----------- 303

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DI-KLDDVALAS 350
           +    G   + G    I G++ MD  + D+ ++ +   GD   +FG  D+   D+ A A 
Sbjct: 304 AASGVGPVSVGGVRTRIRGRVCMDQFVVDVPEAAT--AGDTAFLFGAGDLPSADEWAQAC 361

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT  Y+++ R+G R  + Y
Sbjct: 362 GTIGYEIVTRLGARVPRRY 380


>gi|296392787|ref|YP_003657671.1| alanine racemase [Segniliparus rotundus DSM 44985]
 gi|296179934|gb|ADG96840.1| alanine racemase [Segniliparus rotundus DSM 44985]
          Length = 397

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 171/388 (44%), Gaps = 46/388 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++  +D  A+ +N   +   S  A+  AV+K NAYG G   +A     AG     V ++ 
Sbjct: 5   VQATVDHHAIAHNVRLLAQASAPAQVIAVLKANAYGHGAVPVARTALAAGAAQIGVATLA 64

Query: 67  EGVKLRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVIS----------SVPQLTFYSKL 115
           E  +LR    +A I   L+   P +   +F   +   I           +V +    +  
Sbjct: 65  EAFELRQGGIEAPIIAWLHAFDPDEAVAVFAEAIASGIELGVSTSSQVRAVAEAALRADQ 124

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
           ++       A++VDTG NR G +  E   A     N+      Q+  + SHLA AD P  
Sbjct: 125 LAV-----VAVKVDTGLNRGGFARGEWRKAFADLANAEAAGAVQVRGVFSHLANADRPEY 179

Query: 173 HVNSVQLERFRTLISHYKGIEAS-----LASSSGILLGPNYH------FQLTRPGISLYG 221
             N+ Q    R  +S  +    +     LA+S  +L  P         F  TRPG+++YG
Sbjct: 180 RTNAEQARSLREAVSFARAAGLAPELVHLANSPAVLTRPKALVNELPVFNATRPGVAVYG 239

Query: 222 GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
            +  + +   +   +T  AR+ L ++  AG+ VSYG       D+ +A+  IGYADG   
Sbjct: 240 LSPIMGRDFGLIPAMTLTARVGLTKRIHAGDGVSYGHDFVAASDTTLALLPIGYADGLQR 299

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP- 339
            L+G        V +GG+ +      P +G++ MD  + D+      +  GD   +FGP 
Sbjct: 300 ALAG-----KFEVSIGGRRY------PGVGRVCMDQVLVDLGPGEPKVREGDTAVLFGPG 348

Query: 340 ---DIKLDDVALASGTTNYDLLVRIGTR 364
              +   DD A A+GT NY+++ ++  R
Sbjct: 349 SDGEQTADDWARAAGTINYEIVTQLRGR 376


>gi|239990088|ref|ZP_04710752.1| putative alanine racemase [Streptomyces roseosporus NRRL 11379]
          Length = 390

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 168/380 (44%), Gaps = 31/380 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   +   +  A+  AVVK + YG G    A A   AG       +  E
Sbjct: 10  RAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAARAAGATWLGTATPHE 69

Query: 68  GVKLRLYTPQARIFVLYGIH--PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            + LR      RI         P +E I  D + +            +   + G      
Sbjct: 70  ALALRAAGLDGRIMCWLWTPGGPWREAIEADID-VSAGGMWALREIAAAAEAAGRPARVQ 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           L+ DTG  R G    +  +    + + ++ G L +  + SH ACAD+P     + QL  +
Sbjct: 129 LKADTGLGRGGCQPADWPELVGAARDAERAGHLRITGLWSHFACADEPGHPSIAAQLAVY 188

Query: 183 RTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM--Q 233
           R L+++ +  G++     LA+S   L  P  HF L R GI++YG     ++  S  +  +
Sbjct: 189 RDLVAYAEKEGVDPEVRHLANSPATLTIPEAHFDLVRTGIAMYGISPAPELGTSAELGLR 248

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  A + L++ A AG  VSYG       ++ + +  +GYADG P   SG     S  
Sbjct: 249 PVMTLAAAVALVKDAPAGHGVSYGHHYTTPAETTLGLIPVGYADGVPRHASG-----SGP 303

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
           V +GGK      +  + G++ MD  + D+ +    E G    +FGP    +    D A A
Sbjct: 304 VLVGGK------VRTVAGRVAMDQFVVDL-EGDRPEAGAEAVLFGPGDRGEPTAQDWAEA 356

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T  Y+++ RIG R  + Y
Sbjct: 357 ADTIAYEIVTRIGARVPRVY 376


>gi|313900105|ref|ZP_07833605.1| alanine racemase [Clostridium sp. HGF2]
 gi|312955157|gb|EFR36825.1| alanine racemase [Clostridium sp. HGF2]
          Length = 381

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 176/352 (50%), Gaps = 40/352 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT-SVE 66
           R++ ++  LK +      L+   R  AVVK NAYG G E    A+ +  + D++ T +++
Sbjct: 17  RIRENVMQLKRH------LTAGTRFMAVVKGNAYGHGIEPCVQAMDD--LCDWYGTATMQ 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPY 124
           E +++R  + +  I V +G    +E  +   N I +  S    TF S +  C  G++   
Sbjct: 69  EALRVRSVSGEKPILV-FGYVSDEEIHLAAENNITL--SAFSATFLSHISECCAGMNLKA 125

Query: 125 A--LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHL---ACADDPSSHVN 175
           A  L++DTGF+R+G+    S+ + ++     F+    +++ + +HL   A ++       
Sbjct: 126 AVHLKLDTGFHRMGIDCCSSIADCVEQLLPLFSLPNIEITGMYTHLVYGAGSNQRELAFT 185

Query: 176 SVQLERFRTLISHYK------GIEASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINK 228
            +Q +RF++ I   +      GI   + +S   +  P+ H  + R G  ++G  +    +
Sbjct: 186 ELQFQRFQSCIRALQERKIDTGI-CHICNSKAAIHAPDMHMDMVRVGAYIFGLASASEQR 244

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             P++ V+  +ARI+L+R   AGE V YG      +   IAV A G+ADGY   ++    
Sbjct: 245 LIPLREVLVWKARIVLLRDIAAGEGVGYGHAFIAKQPVRIAVLAAGFADGYRRCIA---- 300

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
             SP  ++     I G   P++GK+ MDM M D+TD  +++VG+Y  + G D
Sbjct: 301 -QSPQSYVS----IHGRPAPLIGKVCMDMFMVDVTDIEAVQVGEYALLSGDD 347


>gi|229172800|ref|ZP_04300355.1| Alanine racemase [Bacillus cereus MM3]
 gi|228610688|gb|EEK67955.1| Alanine racemase [Bacillus cereus MM3]
          Length = 408

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 160/377 (42%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A    G+    V  V+
Sbjct: 28  IEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEVGIDQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +E I +D  ++ V  S                   
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDV-MMTVYRSEDLQGINEIANRLQKKAQI 146

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F  
Sbjct: 147 QVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEK 206

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVV 236
            ++  K +   +     ++S+G +   N    + R GI +YG        H    +Q  +
Sbjct: 207 AVNAAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHAVVSLQPAL 266

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + ++++  I+ A     VSYG     T +  IA   IGYADGY   LS            
Sbjct: 267 SLKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN----------- 315

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS----GT 352
            G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G   + +          GT
Sbjct: 316 KGHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEEEIAVEEVADMLGT 375

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 376 INYEVTCMLDRRIPRVY 392


>gi|46907119|ref|YP_013508.1| alanine racemase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092094|ref|ZP_00229887.1| alanine racemase [Listeria monocytogenes str. 4b H7858]
 gi|67460119|sp|Q721S9|ALR_LISMF RecName: Full=Alanine racemase
 gi|46880386|gb|AAT03685.1| alanine racemase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47019534|gb|EAL10274.1| alanine racemase [Listeria monocytogenes str. 4b H7858]
 gi|328467042|gb|EGF38137.1| alanine racemase [Listeria monocytogenes 1816]
          Length = 368

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 162/377 (42%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    Q    ++ G    ++  +   N I +       + +LT  + L        
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEELTLEAPLR------- 123

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ +  EA             QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G + PI+G++ MD T+  +      + G  + I G D    I  DD A    T
Sbjct: 296 ----LVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAAHYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|291294605|ref|YP_003506003.1| alanine racemase [Meiothermus ruber DSM 1279]
 gi|290469564|gb|ADD26983.1| alanine racemase [Meiothermus ruber DSM 1279]
          Length = 365

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 160/374 (42%), Gaps = 38/374 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L AL +N++ + + +GN +   VVK NAYG G  ++   L   G     V + +E 
Sbjct: 6   LEINLDALAHNYNLLRSRAGNTQVIGVVKANAYGHGAVEVGKELLRLGAWGLAVATTDEA 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            +LR     ARI ++  +HP Q + + + +LIP IS+   L     L + G      L+ 
Sbjct: 66  RELRKAGIVARILLMGSLHPQQAREVVELDLIPSIST---LESAEALNALGKPVTVHLEF 122

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  R+G   +EA     +    +   +  I SH A A++         +   +  I+H
Sbjct: 123 DTGMGRVGFQPEEAPQVKEHLVRYENLLVQGIYSHFADAEE--------DVLWTKEQIAH 174

Query: 189 YKGIEA--------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           +K ++          L +++G      Y     RPGI LYG    +     ++ +    A
Sbjct: 175 FKQVQQVFGPGYFYHLCNTAGTFNFGEYGLSAVRPGIGLYGLLPHLG----LKPIARLLA 230

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP-LTLSGLDSEHSPSVFLGGK 299
           +   +++   G  + Y G         IA   +GYADG P L  +     + P       
Sbjct: 231 KPTQVKELPPGRRIGYSGLYTTQGREWIATLPVGYADGIPRLVFNRATVRYYPD------ 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
              +    P++G+++MD     +   + +E     ++  PD      L   A  +GT +Y
Sbjct: 285 --DQPCTCPVVGRVSMDQITVKLPGPVGLE--QVFEVVTPDFDPTSSLWGWAELTGTVSY 340

Query: 356 DLLVRIGTRYAKFY 369
           +  VR+  R  + Y
Sbjct: 341 EPAVRLAARLPRVY 354


>gi|182414552|ref|YP_001819618.1| alanine racemase [Opitutus terrae PB90-1]
 gi|177841766|gb|ACB76018.1| alanine racemase [Opitutus terrae PB90-1]
          Length = 382

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 171/378 (45%), Gaps = 34/378 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL AL+ N   + A L  + R  AVVK +AYG G  + A  L +AG   F V ++ E 
Sbjct: 15  EIDLAALERNLRLIRASLPAHMRYVAVVKADAYGHGLPQTAARLMHAGADLFAVATLAEA 74

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQ 127
             +R   P   + +L  + P +++ + + +L   +SS+ ++  F +     G      L+
Sbjct: 75  ATVRELGPGWPVLLLSPLLPEEDRYLAEYDLTATVSSIEEVDRFEAAGRVAGRVISVHLK 134

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG  RLG+  ++      +       +L+ + +H A  ++ +    S Q  RF   ++
Sbjct: 135 IDTGMGRLGVWHEQTASVYEHLARAPHLRLAGVFTHFAAPEEAA--FTSEQRRRFLAALA 192

Query: 188 HYKGIE-----ASLASSSGI-LLGPNYHFQLTRPGISLYGGTDKINK------SHPMQTV 235
             +GI          +S+GI  +     F   R G+  +G     N       + P+ + 
Sbjct: 193 ACQGIPLDSIFVHADNSAGIETMSSATPFNAVRIGLLQFGILPHPNSLLSEVHTEPVFSF 252

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T   R+ L++   AG  +SYG    L R + IA+   GY DG P  +S           
Sbjct: 253 LT---RVGLVKSLPAGYTISYGRTYTLGRPTRIAILCAGYGDGIPRAVSNR--------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
              +  I+G   P+LG++TMD T+ DITD+  +  GD   I G     +I + + +  + 
Sbjct: 301 --AQVLIRGTRCPVLGRVTMDQTIVDITDAGDVRCGDEAVIVGRQDQAEISIAEFSTWAD 358

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  ++ L  I  R  + Y
Sbjct: 359 TIPWETLCSITKRVPRVY 376


>gi|319399562|gb|EFV87817.1| alanine racemase [Staphylococcus epidermidis FRI909]
          Length = 382

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 38/386 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 2   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMS 117
           F V +++E ++LR++   A++ VL G+ P +  EK I     + V S         ++  
Sbjct: 62  FAVATLDEAIELRMHGVDAKLLVL-GVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPD 120

Query: 118 CGVSHPY-ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
               + +  +++DTG  R+G+      +E +D   N  N  +     + +H A AD+P S
Sbjct: 121 DNQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLI-NKRNHLV--FEGVYTHFASADEPGS 177

Query: 173 HVNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            +N  Q   F+ +++   K I     +S+G LL         R GISLYG   ++ +  +
Sbjct: 178 SMNE-QYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDN 236

Query: 230 HPMQTVVTAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +    +A+  +  + ++   AGE VSYG       +  IA+  IGYADGY  ++ G  
Sbjct: 237 VKVHLRPSAQLVSETVQVKTLKAGETVSYGRTYTAAEEMTIAILPIGYADGYLRSMQG-- 294

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KL 343
                  F+     + G    ++G+I MD  +  +     ++ G+ + +    +      
Sbjct: 295 ------AFVN----VNGNQCEVIGRICMDQMIVKVPS--HVKTGEKVILMDNHVDSPQSA 342

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + VA   GT NY++L  +  R  + Y
Sbjct: 343 EAVANKQGTINYEVLCNLSRRLPRIY 368


>gi|146743640|gb|ABQ43051.1| alanine racemase [Borrelia burgdorferi ZS7]
          Length = 356

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 152/344 (44%), Gaps = 27/344 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 27  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 86

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 87  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 144

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 145 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 202

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE +S
Sbjct: 203 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGEKIS 262

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+ M
Sbjct: 263 YSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKVCM 311

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           ++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL 
Sbjct: 312 NLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLC 355


>gi|297528581|ref|YP_003669856.1| alanine racemase [Geobacillus sp. C56-T3]
 gi|297251833|gb|ADI25279.1| alanine racemase [Geobacillus sp. C56-T3]
          Length = 384

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 168/386 (43%), Gaps = 39/386 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +EF R   ++IDL A+ +N  ++   L    +  AVVK NAYG G  ++A     AG   
Sbjct: 2   DEFHRDTWVEIDLDAIYDNVANLRRFLPEGTQIMAVVKANAYGHGDAQVAATALEAGASR 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR     A I VL    P    +  +  +   +     L   S L +  
Sbjct: 62  LAVAFLDEALALRKKGIDAPILVLGASRPEDVALAAEHRIALTVFRSDWLEKASSLYNGS 121

Query: 120 VSHPYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + L++DTG  RLG+  +E      AL   H  F      L  + +H A AD+ ++ 
Sbjct: 122 TPIHFHLKMDTGMGRLGVKDEEETKRIAALIDRHPPF-----VLEGVYTHFATADEVNTD 176

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
             S Q  RF  ++            A+S+  L   +  F + R GIS+YG   +  I   
Sbjct: 177 YFSYQYARFLHMLDWLPSRPPLVHCANSAAALRFSDRAFNMVRFGISMYGLAPSPDIKPL 236

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++   +  +R++ ++K   GE VSYG       +  I    IGYADG+   L  L 
Sbjct: 237 LPYELKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGW---LRRLQ 293

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             H   V +GG+        PI+G+I MD  M  + + L   VG  + + G      I +
Sbjct: 294 HFH---VLVGGQ------RAPIVGRICMDQCMIRLPEPLP--VGTKVTLIGRQGDEVISI 342

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DDVA   GT NY++   I  R  + +
Sbjct: 343 DDVARHLGTINYEVPCTISYRVPRIF 368


>gi|4558012|pdb|2SFP|A Chain A, Alanine Racemase With Bound Propionate Inhibitor
 gi|4558013|pdb|2SFP|B Chain B, Alanine Racemase With Bound Propionate Inhibitor
 gi|21465981|pdb|1L6F|A Chain A, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L-
           Alanine
 gi|21465982|pdb|1L6F|B Chain B, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L-
           Alanine
 gi|21465983|pdb|1L6G|A Chain A, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-D-
           Alanine
 gi|21465984|pdb|1L6G|B Chain B, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-D-
           Alanine
 gi|37926920|pdb|1NIU|A Chain A, Alanine Racemase With Bound Inhibitor Derived From L-
           Cycloserine
 gi|37926921|pdb|1NIU|B Chain B, Alanine Racemase With Bound Inhibitor Derived From L-
           Cycloserine
          Length = 388

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 162/386 (41%), Gaps = 39/386 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N+F R    ++DL A+ +N  ++  L   +    AVVK NAYG G  ++A     AG   
Sbjct: 2   NDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASR 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR    +A I VL    P    +     +   +     L   S L S  
Sbjct: 62  LAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGP 121

Query: 120 VSHPYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + L +DTG  RLG+  +E      AL   H  F      L  + +H A AD+ ++ 
Sbjct: 122 FPIHFHLXMDTGMGRLGVKDEEETKRIVALIERHPHF-----VLEGLYTHFATADEVNTD 176

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTD----KIN 227
             S Q  RF  ++            A+S+  L  P+  F + R GI++YG       K  
Sbjct: 177 YFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPL 236

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P++   +  +R++ ++K   GE VSYG       +  I    IGYADG+   L  L 
Sbjct: 237 LPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGW---LRRLQ 293

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             H           + G   PI+G+I MD  M  +   L   VG  + + G      I +
Sbjct: 294 HFHV---------LVDGQKAPIVGRICMDQCMIRLPGPLP--VGTKVTLIGRQGDEVISI 342

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DDVA    T NY++   I  R  + +
Sbjct: 343 DDVARHLETINYEVPCTISYRVPRIF 368


>gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 817

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 172/377 (45%), Gaps = 35/377 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L A+ +N +   + L+   +   +VK   YG G  +IA  L +  V    V   +E
Sbjct: 457 LEINLNAISHNLNYFKSKLNPKTKIMVMVKAFGYGSGSFEIAKLLAHHKVNYLGVAFADE 516

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           G++LR    Q  I VL   +P       I   NL P I S+  L  + K+       S+P
Sbjct: 517 GIELRQAGIQLPIMVL---NPEMTSFPSIIQYNLEPEIYSIRGLKAFIKITQQKELTSYP 573

Query: 124 YALQVDTGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHV-NSV 177
             ++++TG NRLG   Q   +       H+S       +  I+SHLA +DD +  +    
Sbjct: 574 IHIKINTGMNRLGFDAQIIPELISILQKHDSV-----LVKSILSHLAASDDLAQDIFTRK 628

Query: 178 QLERFRTL---ISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q+  F T+   I+    I     ++++S I   P   F + R GI LYG ++  N++  +
Sbjct: 629 QISDFDTISNKITTKLKINPIRHISNTSAISNYPQAQFDMVRLGIGLYGVSNDANETKKL 688

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V T ++ I  IR   +G+ V Y  +  + + + IA   IGYADG              
Sbjct: 689 ENVGTLKSIISQIRNLNSGQSVGYNRRFMVKKPTTIATIPIGYADGISRAWGN------- 741

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                G   +     PI+G I MDM M D+T  ++   G+ + IFG    +  +A A+ T
Sbjct: 742 ---EVGYVLVNEQKAPIVGSICMDMLMIDVT-KINCSEGNQVIIFGKTPSVTTIAKATKT 797

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I +R  + +
Sbjct: 798 IPYEILTSISSRVKRVF 814


>gi|242241483|ref|ZP_04795928.1| alanine racemase [Staphylococcus epidermidis W23144]
 gi|242235026|gb|EES37337.1| alanine racemase [Staphylococcus epidermidis W23144]
          Length = 384

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 38/386 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 4   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 63

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMS 117
           F V +++E ++LR++   A++ VL G+ P +  EK I     + V S         ++  
Sbjct: 64  FAVATLDEAIELRMHGVDAKLLVL-GVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPD 122

Query: 118 CGVSHPY-ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
               + +  +++DTG  R+G+      +E +D   N  N  +     + +H A AD+P S
Sbjct: 123 DNQKNLWLHVKLDTGMGRIGMKDIYEYKEVVDLI-NKRNHLV--FEGVYTHFASADEPGS 179

Query: 173 HVNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            +N  Q   F+ +++   K I     +S+G LL         R GISLYG   ++ +  +
Sbjct: 180 SMNE-QYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDN 238

Query: 230 HPMQTVVTAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +    +A+  +  + ++   AGE VSYG       +  IA+  IGYADGY  ++ G  
Sbjct: 239 VKVHLRPSAQLVSETVQVKTLKAGETVSYGRTYTAAEEMTIAILPIGYADGYLRSMQG-- 296

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KL 343
                  F+     + G    ++G+I MD  +  +     ++ G+ + +    +      
Sbjct: 297 ------AFVN----VNGNQCEVIGRICMDQMIVKVPS--HVKTGEKVILMDNHVDSPQSA 344

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + VA   GT NY++L  +  R  + Y
Sbjct: 345 EAVANKQGTINYEVLCNLSRRLPRIY 370


>gi|28373266|pdb|1EPV|A Chain A, Alanine Racemase With Bound Inhibitor Derived From D-
           Cycloserine
 gi|28373267|pdb|1EPV|B Chain B, Alanine Racemase With Bound Inhibitor Derived From D-
           Cycloserine
 gi|28373268|pdb|1FTX|A Chain A, Crystal Stucture Of Alanine Racemase In Complex With D-
           Alanine Phosphonate
 gi|28373269|pdb|1FTX|B Chain B, Crystal Stucture Of Alanine Racemase In Complex With D-
           Alanine Phosphonate
          Length = 387

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 162/386 (41%), Gaps = 39/386 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N+F R    ++DL A+ +N  ++  L   +    AVVK NAYG G  ++A     AG   
Sbjct: 1   NDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR    +A I VL    P    +     +   +     L   S L S  
Sbjct: 61  LAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGP 120

Query: 120 VSHPYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + L +DTG  RLG+  +E      AL   H  F      L  + +H A AD+ ++ 
Sbjct: 121 FPIHFHLXMDTGMGRLGVKDEEETKRIVALIERHPHF-----VLEGLYTHFATADEVNTD 175

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTD----KIN 227
             S Q  RF  ++            A+S+  L  P+  F + R GI++YG       K  
Sbjct: 176 YFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPL 235

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P++   +  +R++ ++K   GE VSYG       +  I    IGYADG+   L  L 
Sbjct: 236 LPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGW---LRRLQ 292

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             H           + G   PI+G+I MD  M  +   L   VG  + + G      I +
Sbjct: 293 HFHV---------LVDGQKAPIVGRICMDQCMIRLPGPLP--VGTKVTLIGRQGDEVISI 341

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DDVA    T NY++   I  R  + +
Sbjct: 342 DDVARHLETINYEVPCTISYRVPRIF 367


>gi|295398172|ref|ZP_06808218.1| alanine racemase [Aerococcus viridans ATCC 11563]
 gi|294973522|gb|EFG49303.1| alanine racemase [Aerococcus viridans ATCC 11563]
          Length = 387

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 176/387 (45%), Gaps = 47/387 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + L A+ +N+ ++    GN    AVVK + YGLG  KIA AL + G   F V   +E ++
Sbjct: 13  VSLDAIIHNYFAIKKHIGNKAVMAVVKADGYGLGAVKIADALQSRGADGFAVAVADEALE 72

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-------YSKLMSCGVSHP 123
           LR     A I +L    P    ++ +  +   +SS+  L +       +S+L    V   
Sbjct: 73  LRDAGIIAPIMILGLTDPDDAWLLANLEIGVTVSSLDYLKYAKKHDKDFSRLHQLNVH-- 130

Query: 124 YALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN---S 176
             L+VD+G  R+G+      Q+ +D+   + + K  +L+ + +H A AD  + H      
Sbjct: 131 --LKVDSGMGRIGVRSAKEAQKIIDYI--AKHPKKFKLASVFTHYATADSFTDHGKDKVQ 186

Query: 177 VQLERFRTLISH--YKGIEAS----LASSSGILLGPNYHFQLTRPGISLYGGTDKINK-S 229
            Q + F +L+    Y  +  +     ++S+  L  P       R G+ LYG    +   +
Sbjct: 187 AQSDFFESLLGQLDYSALGYTPLFHQSNSALSLWYPEKTLDAARLGLGLYGSIPSMEDVA 246

Query: 230 HPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P+  +  +T E  II +++  AG+ +SYG       D  +A   IGYADG+  +  GLD
Sbjct: 247 SPVDFKQALTLETEIIYVKQMHAGDTISYGADYVAGTDEWVATLPIGYADGWQRSYLGLD 306

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
           +             + G   P +G+I MD  +  +   +   VG  + + G +    + +
Sbjct: 307 A------------IVDGERCPSVGRICMDQMIIRLPHEMP--VGAKVTLIGTNGGQTVDV 352

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
            DVA  +GT  +++L  +G R  + YT
Sbjct: 353 VDVASHAGTIAHEVLTNLGQRLPREYT 379


>gi|158317753|ref|YP_001510261.1| alanine racemase [Frankia sp. EAN1pec]
 gi|158113158|gb|ABW15355.1| alanine racemase [Frankia sp. EAN1pec]
          Length = 380

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 174/378 (46%), Gaps = 33/378 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L A++++  ++ A +G A T AVVK + YG G    A A  +AG        +EE + 
Sbjct: 16  IELDAVRDSVAALVARAGAAATMAVVKADGYGHGMLPCARAALDAGASWLGTAFLEEALA 75

Query: 71  LRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           LR       +       PG+     I  D +L    +        +   + G +    L+
Sbjct: 76  LRAAGITVPVLSWLAA-PGERLAAGIAADVDLS-ASAGWALDDLAAAARTAGRAARVHLK 133

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACADDPSSHVNSVQLERFRT 184
           +DTG  R G + ++      ++   +   L  ++   SH A AD P       Q+ RF  
Sbjct: 134 IDTGLGRAGATGEDWPGLCDSAAALEADGLIEVVGVWSHFAFADAPGHPTVQAQISRFGD 193

Query: 185 LI--SHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTV 235
            +  +   G+      LA+S+  L+ P  HF + RPG+S+YG +       P    ++  
Sbjct: 194 AVDVARKAGLRPQVRHLANSAATLVSPEAHFDMVRPGVSVYGLSPGPEVGPPSAFGLRPA 253

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A I L+++  AG  VSY  + + + ++ +AV  +GYADG P +     + ++  V 
Sbjct: 254 MTLRASIALVKRVPAGTGVSYAHRYRTSAETGLAVVPLGYADGIPRS-----ATNTAEVL 308

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
           +GG+         I G + MD  + D+  +  + VGD + +FGP    +   DD A A G
Sbjct: 309 VGGR------RRRIAGTVCMDQFVMDV-GADPVRVGDEVILFGPGDRGEPTADDWARALG 361

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++ RIG R  + Y
Sbjct: 362 TINYEIVTRIGPRVPRVY 379


>gi|322382485|ref|ZP_08056373.1| alanine racemase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153547|gb|EFX45943.1| alanine racemase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 395

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 166/380 (43%), Gaps = 29/380 (7%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++ L AL  N  +   AL  + R  AVVK +AYG G   IA     +G     V  ++E
Sbjct: 10  VEVSLDALSGNLQAFRQALPDSIRIMAVVKADAYGHGAASIAREAIASGADHLAVAFLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL- 126
            ++LR     A I VL    P   ++    N+   + +   L     L     +    L 
Sbjct: 70  ALQLREAGISAPILVLGYTAPDGLEMALKNNITLTVFNEEMLRGMELLQGQAEALDKRLR 129

Query: 127 ---QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +VD+G +R+GL   +EA+ +           L  + +H ACAD+       +Q E+F
Sbjct: 130 VHVKVDSGMHRIGLYKEEEAVSYLKQIARMPHICLEGLFTHYACADEADKAYTRLQYEKF 189

Query: 183 RTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQT 234
             ++   K  GI+       +S+  +  P   + + R GI++YG   ++K++ +   ++ 
Sbjct: 190 SRVVHEVKRLGIDIPYIHAGNSAAAIDTPELVYNMARLGIAMYGLYPSEKVDHTIIKLEP 249

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ + R+I  +    G  +SYG       +  I    IGYADG+   LS          
Sbjct: 250 VMSLKTRMIHDKWLSEGSGISYGTIYHTKGEERIGTLPIGYADGFSRMLS---------- 299

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  I+G  VPI+G+I MD  M +IT     E GD + + G      I  +++A   
Sbjct: 300 -TKANALIRGKRVPIVGRICMDQCMLNITGVPEAEAGDEVVLIGRQGDEVIPAEEIAGHL 358

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           GT NY++   +  R  + Y 
Sbjct: 359 GTINYEVTCMMAHRIPRVYV 378


>gi|312135627|ref|YP_004002965.1| alanine racemase [Caldicellulosiruptor owensensis OL]
 gi|311775678|gb|ADQ05165.1| alanine racemase [Caldicellulosiruptor owensensis OL]
          Length = 390

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 176/381 (46%), Gaps = 38/381 (9%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL  L  N  ++   +    +  AVVK +AYG G  +I+  L   GV    V  ++E 
Sbjct: 13  EIDLDNLVYNLENIKKKILPQTKIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAIIDEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           ++LR +     I +L G  P +  E+++ +  +   + +  Q  + SK     G      
Sbjct: 73  LQLRHFNFDVPILIL-GFTPFELSEQVV-ENEISQTVYTYEQAYYLSKAAQKIGKKAKIH 130

Query: 126 LQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSVQLE 180
           ++VDTG  R+G L  +++++   N       +L  I SH + ADDP     +H   ++ E
Sbjct: 131 IKVDTGMGRIGFLCCEQSVNTILNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFMKFE 190

Query: 181 RFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
            F   ++       YK I    A+SS  +  P Y   + R G+ LYG      + +   +
Sbjct: 191 NFVKELNKNGVYFKYKHI----ANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHINL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+  T  G    H  
Sbjct: 247 KPVMSIKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGF--TRVGSSQRHV- 303

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                    IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A 
Sbjct: 304 --------LIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAE 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+++     R  + Y
Sbjct: 356 QIGTINYEVVCSFSKRIPRVY 376


>gi|239825783|ref|YP_002948407.1| alanine racemase [Geobacillus sp. WCH70]
 gi|239806076|gb|ACS23141.1| alanine racemase [Geobacillus sp. WCH70]
          Length = 387

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 167/388 (43%), Gaps = 41/388 (10%)

Query: 3   SNEFLR---LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           SN F R    +IDL A+  N   + N L  + R  AVVK NAYG G  ++A     AG  
Sbjct: 2   SNLFYRDTWAEIDLDAIYYNVSQLKNFLQNDIRIMAVVKANAYGHGDVQVAKTALEAGAS 61

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              V  ++E + LR     A I VL    P    I     +   +     +   + + S 
Sbjct: 62  YLAVAFLDEAIALRKKGVTAPILVLGACRPSDINIAAKHRITLTVFQPEWIEQAANVYSE 121

Query: 119 GVSHPYALQVDTGFNRLGLSLQ-------EALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                + L++DTG  RLG+  +       E +D  H  F+     L    +H A AD+ +
Sbjct: 122 TSPVLFHLKMDTGMGRLGVREETETKRVIEQID-RHPYFS-----LEGAYTHFATADEIN 175

Query: 172 SHVNSVQLERFRTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
           +   S Q + F  ++    YK       +S+  L  P+  F + R GIS+YG   + +I 
Sbjct: 176 TDYFSFQYDNFLRMLEWLPYKPPIIHCGNSATALRFPDKAFNMVRFGISMYGLSPSPEIK 235

Query: 228 KSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +  P  ++   +  +R++ ++K   GE VSYG       +  +    IGYADG+   L  
Sbjct: 236 QYLPYELKEAFSLHSRLVHVKKLKPGEKVSYGATYTAETEQWVGTVPIGYADGW---LRK 292

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
           L + H           + G   PI+G+I MD  M  +   +   VG  + + G      I
Sbjct: 293 LQNFHV---------LVNGEKAPIIGRICMDQLMVRLPKQMP--VGTKVTLIGRQGDEYI 341

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +DDVA   GT NY++   I  R  + +
Sbjct: 342 SVDDVAQYLGTINYEVPCTISYRVPRIF 369


>gi|254779539|ref|YP_003057645.1| Alanine racemase [Helicobacter pylori B38]
 gi|254001451|emb|CAX29451.1| Alanine racemase [Helicobacter pylori B38]
          Length = 377

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 179/382 (46%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIIPKDACVMAVVKANAYGVGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR Y  +  I +L G  P     ++ D +L  ++ S  Q   +S++ +         
Sbjct: 68  ALELRSYFSKTPILIL-GYSPNSNASMLIDNDLSAMVFSFEQAEVFSQMALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++++ +S P  
Sbjct: 187 FLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNEMKESCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ VV+ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L        
Sbjct: 247 LKNVVSLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI---- 302

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
                  +  I   + P++GK+ MD     + D  + E GD + +FG    K +D   +A
Sbjct: 303 -------QVAINNQLAPLIGKVCMDQCFVKLNDIQAKE-GDEVILFGDKSTKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
           +   T  Y+ +  +  R  + Y
Sbjct: 355 VLLNTIPYETISTLSKRLERVY 376


>gi|308068000|ref|YP_003869605.1| alanine racemase 1 [Paenibacillus polymyxa E681]
 gi|305857279|gb|ADM69067.1| Alanine racemase 1 [Paenibacillus polymyxa E681]
          Length = 398

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 171/383 (44%), Gaps = 31/383 (8%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R +I+L  L  N+ +   AL  +      VK NAYG G  +I+  L   G     V  ++
Sbjct: 9   RAEINLDHLGANYEAFRKALPADKLILVCVKANAYGHGAVEISKELERLGADYLSVAFLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I VL    P   +  ++ ++   + S   L    +L   G       
Sbjct: 69  EALELRHAGVQLPILVLGYTSPDAVQTAWEHDISLTVFSEEVLESIRRLDRQGSERKLKV 128

Query: 126 -LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            +++D+G  RLGL   +EA+ F   +   +   L  + +H A AD+       +Q +RFR
Sbjct: 129 HIKIDSGMGRLGLLPGEEAMAFVRQANELEQVLLEGMYTHFARADEEDKSYTLLQYDRFR 188

Query: 184 TLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTV 235
            +      +GI   +    +S+  +  P+    + R GIS+YG   +D++N+    +  V
Sbjct: 189 GVAQALREQGITIPIIHTGNSAATIDTPSLSPNMVRIGISIYGLYPSDEVNRQAIELLPV 248

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ +  ++  +    G  VSYG +   + +  I    IGYADGY   LSG          
Sbjct: 249 LSLKTAVVYTKTLPPGWGVSYGTRYVTSSEERIGTLPIGYADGYSRMLSG---------- 298

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYI----QIFGPDIKLDDVA 347
              +  I+G  VP+LG I MD  M  +     D+  I+ G+ +    Q  G  I  D++A
Sbjct: 299 -KIEVLIRGRRVPVLGTICMDQCMVSLQSFAEDAEEIQTGEEVVLIGQQSGETIAADELA 357

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
              GT +Y+++  I  R  + YT
Sbjct: 358 SKLGTIHYEVICMIADRVPRVYT 380


>gi|333031463|ref|ZP_08459524.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
 gi|332742060|gb|EGJ72542.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
          Length = 833

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 166/375 (44%), Gaps = 33/375 (8%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL AL +N  +  + L    +   ++K  AYG G  ++A  L +  V    V   +E
Sbjct: 475 LEVDLNALIDNLNYYRDQLQPKTKIMCMIKAAAYGAGSYEVAKTLQDRKVDYLGVAVADE 534

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSH-PYA 125
           G +LR     + I ++        K +F  +L P + S   L +  +     G+++ P  
Sbjct: 535 GAELRKVGITSSIIIM-NPEVSAFKQMFQYSLEPEVYSFHLLDSLLNAAEKEGITNFPIH 593

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184
           +++DTG +RLG    +  +  +   N+       I SHL  +D D        Q+  F  
Sbjct: 594 IKIDTGMHRLGFMADDMPELVNRLKNQNALIPKSIFSHLVGSDSDVFDDFTKDQISLFDK 653

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-----MQT 234
             +  +      I   + +S+GI   P  H+ + R GI LYG        HP     ++ 
Sbjct: 654 AATELQAAFSHKIIRHICNSAGIERFPEAHYDMVRLGIGLYG-------VHPSNKPILKN 706

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V T +  I+ I+     E V Y  +  LTR+S IA   IGYADG    L   +       
Sbjct: 707 VNTLKTTILQIKDLDKIETVGYSRKGVLTRNSRIAAIPIGYADGLNRKLGNHN------- 759

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              G   + G     +G I MD++M D+TD +  + GD + I+G D+  + +A   GT  
Sbjct: 760 ---GFCLVNGQKASYIGNICMDVSMIDVTD-IPCKEGDEVIIYGNDLPAEVLAEKLGTIP 815

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  I TR  + Y
Sbjct: 816 YEILANISTRVKRVY 830


>gi|226223505|ref|YP_002757612.1| alanine racemase [Listeria monocytogenes Clip81459]
 gi|254823845|ref|ZP_05228846.1| alanine racemase [Listeria monocytogenes FSL J1-194]
 gi|254931268|ref|ZP_05264627.1| alanine racemase [Listeria monocytogenes HPB2262]
 gi|254992344|ref|ZP_05274534.1| alanine racemase [Listeria monocytogenes FSL J2-064]
 gi|255522573|ref|ZP_05389810.1| alanine racemase [Listeria monocytogenes FSL J1-175]
 gi|300764095|ref|ZP_07074090.1| alanine racemase [Listeria monocytogenes FSL N1-017]
 gi|259710069|sp|C1L1F6|ALR_LISMC RecName: Full=Alanine racemase
 gi|225875967|emb|CAS04671.1| Putative alanine racemase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|293582818|gb|EFF94850.1| alanine racemase [Listeria monocytogenes HPB2262]
 gi|293593068|gb|EFG00829.1| alanine racemase [Listeria monocytogenes FSL J1-194]
 gi|300515085|gb|EFK42137.1| alanine racemase [Listeria monocytogenes FSL N1-017]
 gi|328475449|gb|EGF46215.1| alanine racemase [Listeria monocytogenes 220]
 gi|332311293|gb|EGJ24388.1| Alanine racemase [Listeria monocytogenes str. Scott A]
          Length = 368

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 162/377 (42%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYA 125
            + LR    Q    ++ G    ++  +   N I        LT + +  L    +  P  
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAKNHI-------SLTVFREDWLEDLTLEAPLR 123

Query: 126 --LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ +  EA             QL  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           +T+++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G + PI+G++ MD T+  +      + G  + I G D    I  DD A    T
Sbjct: 296 ----LVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAAHYLDT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLNERIPRKY 366


>gi|163814916|ref|ZP_02206304.1| hypothetical protein COPEUT_01067 [Coprococcus eutactus ATCC 27759]
 gi|158449855|gb|EDP26850.1| hypothetical protein COPEUT_01067 [Coprococcus eutactus ATCC 27759]
          Length = 377

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 163/372 (43%), Gaps = 26/372 (6%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL  L++N  ++ + L       AV+K + Y  G   + P L   G+  + V   EEG 
Sbjct: 14  IDLAKLRSNIANIKSRLKPGVEFIAVMKGDGYRHGIAGLYPTLKECGIDSYAVAIWEEGK 73

Query: 70  KLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            LR       I +L         E   +D +L  V S        +     G      ++
Sbjct: 74  MLRDAGATESILILGDTADDMLDEAAKYDLDLT-VFSMEGAENMAAAARRAGKKQNVQIK 132

Query: 128 VDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++TG NR+G  + QE+ D        +   ++ I +H A AD+        QL+ +   +
Sbjct: 133 LNTGMNRIGFPVCQESFDTIKKICEMEDLNVTGIFTHFARADEGDHTSARKQLDLYLHAV 192

Query: 187 SHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           +  + +     +  +A+S  IL+ P       R G  LYG T   D   K+  +Q +++ 
Sbjct: 193 NELEKMGVVIPKHHVANSPAILMLPEAQLDAVRCGDILYGLTPSDDFDWKNSGLQEILSW 252

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              + ++++  AG  V YGG     R + IA   +G+ADGY   LS             G
Sbjct: 253 YTYVAMVKEVPAGSEVGYGGTFVTERPTKIATLPVGFADGYSRYLSN-----------KG 301

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           K  I G+  PI+G++ MD  M DITD   ++ GD + + G  + ++D+A     TN D++
Sbjct: 302 KVIINGHEAPIIGRVCMDQCMADITDIPDVQRGDTVTLLGEGMSIEDMANML-DTNVDVI 360

Query: 359 V-RIGTRYAKFY 369
           V  I  R  + Y
Sbjct: 361 VCNISVRVPRVY 372


>gi|295702426|ref|YP_003595501.1| alanine racemase [Bacillus megaterium DSM 319]
 gi|294800085|gb|ADF37151.1| alanine racemase [Bacillus megaterium DSM 319]
          Length = 396

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 164/376 (43%), Gaps = 29/376 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +ID+ A+  N + +  L    +T  AVVK NAYG G +++A     AG     V  ++E 
Sbjct: 21  EIDVEAIFQNVNHVRELIPVHKTLMAVVKANAYGHGDKEVAEIALQAGADMLAVAFLDEA 80

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    +  I VL  +     +   + ++     S   +   + ++         L++
Sbjct: 81  IALRKKGIKESILVLGAVPTLHIQTALEWDVTVTAYSKAWIEEAASILGENSQLHMHLKI 140

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG  RLG+  +E L  T        G  L  + +H A AD+ +S     Q   F  ++ 
Sbjct: 141 DTGMGRLGVRTKEELHETMKIIASHSGFVLDGVFTHFATADELNSSYFEEQYTFFEEMVR 200

Query: 188 -----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINK--SHPMQTVVTA 238
                ++K      A+S+ +L  P   F   R GIS+YG   ++++ +    P++   + 
Sbjct: 201 IVKEYNFKPPMIHCANSAALLRRPKDIFNGVRLGISMYGLSPSEELKEVLPIPLKQAFSL 260

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +RI+ ++K   G  +SYG   +   D  IA   +GYADG+   LS  +           
Sbjct: 261 HSRIVHVKKVKKGSHISYGATYEAKEDEWIATIPVGYADGWIRKLSNFEV---------- 310

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354
              + G  VPI+G+I MD  M  +      + G  +   G     +I +D+VA    T N
Sbjct: 311 --LVDGVKVPIVGRICMDQLMIKLPKMY--KTGTKVTFIGKQKGAEITIDEVAKHLETIN 366

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++   +  R  + YT
Sbjct: 367 YEIPCMVAARVPRVYT 382


>gi|161779848|gb|ABX79410.1| VanTc4 [Enterococcus casseliflavus]
          Length = 700

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 166/366 (45%), Gaps = 37/366 (10%)

Query: 15  ALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +   +    +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRVIPSTTKVMAVVKADAYGCDAKTVAGTLERAGVDFFAVATIEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K   + N   +I +V        L   G+     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAK---ELNRYSLIQTVVSEAHGQALARTGLPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNS-VQLERFRTLISHYK 190
           RLG++    L+     F     +++ I SHL  +D  D +S + +  Q+  F  L++   
Sbjct: 467 RLGVA--PDLETVRKLFALPSLKITGIFSHLGSSDQLDTASILRTQAQITCFDDLLA--- 521

Query: 191 GIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTA 238
           G+ A         L SS GIL  P  H+   RPGI L G     N+       +Q ++T 
Sbjct: 522 GLSARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTL 581

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A ++  +   AGE + YG      R + I + +IGY DG P  LS    + S       
Sbjct: 582 KALLVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQGFQLS------- 634

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
               +G ++P +G + MDM + D+TD   + V   +++        D A    T   +L+
Sbjct: 635 ---YQGVLLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTAADQA---QTITNELI 688

Query: 359 VRIGTR 364
            R+G+R
Sbjct: 689 SRLGSR 694


>gi|257462583|ref|ZP_05626993.1| alanine racemase, biosynthetic [Fusobacterium sp. D12]
 gi|317060235|ref|ZP_07924720.1| alanine racemase [Fusobacterium sp. D12]
 gi|313685911|gb|EFS22746.1| alanine racemase [Fusobacterium sp. D12]
          Length = 354

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 167/376 (44%), Gaps = 42/376 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   L++N   +   +       V+K NAYGLG   +   L   G+  F V S+EE 
Sbjct: 5   VEIDTEHLRHNIREIQKRAEGLEVCGVIKANAYGLGVLPVTKILEEEGIHFFAVASLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQ----EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            ++R       I +L  +   +    E+  F  N    +SS  +L + S+       H  
Sbjct: 65  KEVRSAGIAGEILILGSLFHEEILEAEEAGFHIN----VSSREELEWISQHAPKVKIH-- 118

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN---SVQLE 180
            +++DTG  RLG S QE  D    +F K+L  Q+S I SH + AD  S         Q+E
Sbjct: 119 -IKIDTGMTRLGFSYQEGRDIL--AFAKQLSLQISGIFSHFSDADGFSQEAQKYTETQIE 175

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHF--QLTRPGISLYGGTDKINKSHPM---QTV 235
           RF    ++ K I      +SG L+         + R GI +YG    I  S P+   + V
Sbjct: 176 RFLPY-ANQKDIPYRHIFNSGALVQHRNQKIGNMVRAGICMYG----ILGSTPIPDFKNV 230

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           VT + +++  +K      VSYG    L +        IGYADG    L+           
Sbjct: 231 VTLKTKVLFKKKVEEDTYVSYGRLYCLKKGETYVTLPIGYADGVKKYLAN---------- 280

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTT 353
            GGK  I G + PI+G I MDM M  I ++L   I++G  + ++  +I ++   +   T 
Sbjct: 281 -GGKVEILGELCPIIGAICMDMMMVKIPENLEDKIKIGTEVIVWNNEI-IEKNNIPE-TC 337

Query: 354 NYDLLVRIGTRYAKFY 369
            +D+   +G R  + Y
Sbjct: 338 TWDMFTALGRRVQRIY 353


>gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
 gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
          Length = 815

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 172/375 (45%), Gaps = 30/375 (8%)

Query: 9   LKIDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+ +N  +H  + L    +  A+VK NAYGLG  +++  L +  +    V   +
Sbjct: 454 LEVNLNAILHNINYHK-SLLKPGTKMMAMVKANAYGLGSFEVSEFLQHHHIDYLGVAYAD 512

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLT-FYSKLMSCGV--S 121
           EGV+LR       I V+   +P Q   + I + NL P I S   L  FY  +   G    
Sbjct: 513 EGVELRKKGITTPIIVM---NPEQHSYQTIIEYNLEPEIYSFRVLELFYEAVQKSGYDKK 569

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLE 180
           +P  ++++TG +RLG    E LD    + + K  ++  + SHL+ +D P     ++ QLE
Sbjct: 570 YPIHIKLETGMHRLGFKDFE-LDQLSETLSHKNVKVQSMFSHLSSSDMPEEKEFTLKQLE 628

Query: 181 RFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
            F    S+      Y  I   L +S+GI    ++   + R GI + G +        +++
Sbjct: 629 VFEKNSSYLIEKLGYTSIRHIL-NSAGITSYKDHQHDMVRIGIGMLGESADPEIQKQLRS 687

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           VV+ +  I  I     GE V Y  + K    + IA   +GYADG P  +           
Sbjct: 688 VVSFKTVISQISTVENGESVGYSRRYKTDHPTRIATIPVGYADGIPRLIGNQ-------- 739

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
            +G  G +   + PI+G I MDM M ++    +++ GD + +F     L + A    T  
Sbjct: 740 -VGNVG-VNKTLAPIVGNICMDMMMINVDHIPNVKEGDTVTVFNAHPSLKEFAGYCKTIT 797

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  I  R  + Y
Sbjct: 798 YEVLTSISPRVKRIY 812


>gi|254823094|ref|ZP_05228095.1| alanine racemase [Mycobacterium intracellulare ATCC 13950]
          Length = 391

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 176/383 (45%), Gaps = 44/383 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N   +   +G A+  AVVK + YG G  + A A   AG  +  V +V+E + 
Sbjct: 21  VDLGAIAHNVRLLCEQAGGAQVMAVVKADGYGHGAAQTARAALAAGAAELGVATVDEALA 80

Query: 71  LRLYTPQARIFVLYGIHPG----QEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYA 125
           LR      R  VL  +HP        ++ D  +   +SS  QL      +   G +    
Sbjct: 81  LR--ADGVRAPVLAWLHPPGFDFGPALLADVQI--AVSSERQLDELLDAVRRTGRTATVT 136

Query: 126 LQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++VDTG NR G+  +     L     +  +    L  ++SH+  AD P++ VN +Q +RF
Sbjct: 137 VKVDTGLNRNGVPPEHYPSMLTALRRAVAENAIVLRGLMSHMVYADQPANPVNDLQAQRF 196

Query: 183 RTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV-- 235
             +++  +  G+    A L++SS  +  P+  F + RPGI++Y G   + +   M  +  
Sbjct: 197 TEMLAQARDQGVRYEAAHLSNSSATMSRPDLAFDMVRPGIAVY-GLSPVPERGDMGLIPA 255

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + L++   AGE VSYG      RD+ +A+  +GYADG               VF
Sbjct: 256 MTVKCPVALVKSIRAGESVSYGHTWTARRDTTLALLPVGYADG---------------VF 300

Query: 296 --LGGK--GFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDV 346
             LG +    I G   P +G+I MD  + D+      +  GD   +FGP    +    D 
Sbjct: 301 RSLGNRLEVLINGRRRPGVGRICMDQFVVDLGPGPTDVAEGDEAILFGPGASGEPTAQDW 360

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A   GT +Y+++     R  + Y
Sbjct: 361 ADLLGTIHYEVVTSPRGRITRTY 383


>gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
 gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
          Length = 821

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 163/372 (43%), Gaps = 27/372 (7%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N  +  N L  + +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLEALVDNLNYYRNKLKPDTKMVCMVKASAYGAGSFEIAKTLEDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH-P 123
           G  LR     + I ++   +P     K +FD  L P + S   L    K     GVS+ P
Sbjct: 523 GADLRKAGINSSIIIM---NPELTAFKTMFDYKLEPEVYSFHLLEELIKAAGREGVSNFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERF 182
             +++DTG +RLG + +E          +       + SHL  +D +        Q+E F
Sbjct: 580 IHIKIDTGMHRLGFAPEEIPALVDRLHRQSAVIPRSVFSHLVGSDAERFDSFTRRQIETF 639

Query: 183 RTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
               +  +      I   + +++GI   P   F + R GI LYG     NK   +  V T
Sbjct: 640 ENASAELQAGFSHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNKI--LHNVGT 697

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I+ I    A E V Y  +  LTR+S IA   IGYADG    L   ++         
Sbjct: 698 LKTTILQIHDVPADETVGYSRKGILTRNSRIAAIPIGYADGLNRHLGNGNA--------- 748

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G   P +G I MD+ M D+TD +  + GD   IFG ++ +  +A    T  Y++
Sbjct: 749 -YCLVNGQKTPYVGNICMDVCMIDVTD-IDCKEGDKAIIFGDELPVTILADKLNTIPYEI 806

Query: 358 LVRIGTRYAKFY 369
           L  +  R  + Y
Sbjct: 807 LTSVSNRVKRIY 818


>gi|163939906|ref|YP_001644790.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
 gi|229132940|ref|ZP_04261783.1| Alanine racemase [Bacillus cereus BDRD-ST196]
 gi|163862103|gb|ABY43162.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
 gi|228650522|gb|EEL06514.1| Alanine racemase [Bacillus cereus BDRD-ST196]
          Length = 408

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 167/381 (43%), Gaps = 36/381 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A +   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L    ++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLQGIDEVANHLQKKVRIH 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTNMQTSLFEKA 207

Query: 186 IS-------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
           ++       H+  I +S  +S+G +   N    + R GI +YG        H    +Q  
Sbjct: 208 VNTAEELGIHFPYIHSS--NSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVASLQPA 265

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++++  ++ A     VSYG     T +  IA   IGYADGY   LS           
Sbjct: 266 LSLKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN---------- 315

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS----- 350
             G   I G  VP++G++ MD  M D+T+++ ++VGD +  +G   K D+  +A      
Sbjct: 316 -KGHALINGVRVPVIGRVCMDQLMLDVTNAMPVQVGDEVVFYG---KQDEEEIAVEEIAD 371

Query: 351 --GTTNYDLLVRIGTRYAKFY 369
             GT NY++   +  R  + Y
Sbjct: 372 MLGTINYEVTCMLDRRIPRVY 392


>gi|91786104|ref|YP_547056.1| alanine racemase [Polaromonas sp. JS666]
 gi|123165554|sp|Q12H34|ALR_POLSJ RecName: Full=Alanine racemase
 gi|91695329|gb|ABE42158.1| alanine racemase [Polaromonas sp. JS666]
          Length = 364

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 167/368 (45%), Gaps = 32/368 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL +N     + + +AR  AVVK NAYG G E +   L +A    F +  + E  +
Sbjct: 9   IHRPALAHNLARARSAAPDARVWAVVKANAYGHGIEHVFDGLRSA--DGFALLDLAEARR 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L G    ++ ++    +L  VI    Q+   +   +  V H   L+++
Sbjct: 67  LRALDWRGPILLLEGCFEARDLELCSRLSLWHVIHCNEQIDMLAAHKT-QVPHRVFLKMN 125

Query: 130 TGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G NRLGL  +     +T  +   ++ ++SL+ +H + AD P     + QL  F  +   
Sbjct: 126 SGMNRLGLRPERFRAAWTRLNALPQVDEISLM-THFSDADGPKG--IAAQLRAFDAVTHD 182

Query: 189 YKGIEASLASSSGILLGPN---YHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEAR 241
             G E SL++S+G+L   +         RPGI +YG      +       +Q  +T  +R
Sbjct: 183 LPG-ERSLSNSAGVLRHGDELAARSDWVRPGIVVYGSAPDFPEHSAADWGLQPTMTLSSR 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II +++  AG+ V YG          I V A GYADGYP   S            G    
Sbjct: 242 IIGVQELAAGDTVGYGSSFTADGPLRIGVVACGYADGYPRHCS-----------TGTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYD 356
           + G    ++G+++MDM   D+T      +G  + ++G       + +D+VA  +GT  Y+
Sbjct: 291 VNGVRTRMVGRVSMDMITVDLTPVPDAGMGAEVTLWGRSSGGAVLPIDEVAQTAGTVGYE 350

Query: 357 LLVRIGTR 364
           L+  +  R
Sbjct: 351 LMCAVAPR 358


>gi|91064848|dbj|BAE93144.1| alanine racemase [Helicobacter pylori]
          Length = 377

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 179/382 (46%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR + P+  I +L G  P     ++ D +L  ++ S+ Q   +S++ +         
Sbjct: 68  ALELRSHFPKTPILIL-GYSPNANASMLVDNDLSAMVFSLEQAEVFSQMALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++++ +S P  
Sbjct: 187 FLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L        
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLARALGNRI---- 302

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
                  +  I   + P++GK+ MD     + D  + E GD + +FG    K +D   +A
Sbjct: 303 -------QVAINNQLAPLIGKVCMDQCFVKLNDIQAKE-GDEVILFGDKSAKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIPYETISTLSKRLERVY 376


>gi|329119158|ref|ZP_08247848.1| alanine racemase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464717|gb|EGF11012.1| alanine racemase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 351

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 173/370 (46%), Gaps = 40/370 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEG 68
           +I L  L+ N+ ++  + G  +  AV+K +AYG G  + A AL  A + D F V  +EE 
Sbjct: 7   EIRLDRLRENYQTLKQIHGG-KMLAVLKADAYGHGALRCAHAL--ADIADGFAVAFLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
            +LR       I +L G+    E    +  NL PV+ +  QL     L++     P    
Sbjct: 64  AELRRGGIANPIVLLEGVFEAAEYAEVERLNLWPVVGNQWQL---ESLLAHEWQKPVQVW 120

Query: 126 LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++D+G +R G    E A  +T  + + K+  + +  SH ACAD+    +  +Q E F  
Sbjct: 121 LKMDSGMHRTGFFPHEYAPAYTALAQSGKVAAI-VKTSHYACADEEERGMTEMQTEAFDL 179

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQTVVTAE 239
             +H  G E+   S++ +   P       R G++LYG     G D   K  P+  +VT  
Sbjct: 180 ACAHLAGEESLANSAAALAY-PQARRDWGRAGLALYGIDPFLGHDPRFK--PVMRLVTE- 235

Query: 240 ARIILIRKALAG-ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              I   K L   E + YG      R + + +AA GYADGYP   +            G 
Sbjct: 236 ---IFGEKVLQPHEPIGYGASFYTKRSTRVGLAAGGYADGYPRRAA-----------TGT 281

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    ILG+++MDM   ++ D   I  G  ++++G  + +++VA A+GT  Y+LL
Sbjct: 282 PVAVAGRRSRILGRVSMDMLTLELADHEGI--GSEVELWGDTVDINEVAAAAGTIAYELL 339

Query: 359 VRIGTRYAKF 368
             +  + AKF
Sbjct: 340 CNV--KRAKF 347


>gi|222529882|ref|YP_002573764.1| alanine racemase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456729|gb|ACM60991.1| alanine racemase [Caldicellulosiruptor bescii DSM 6725]
          Length = 390

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 177/381 (46%), Gaps = 38/381 (9%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL  L  N  ++   +    +  AVVK +AYG G  +I+  L   GV    V  ++E 
Sbjct: 13  EIDLDNLVYNLENIKKKILPQTKIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAIIDEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           ++LR +     I +L G  P +  E+++ + ++   + +  Q  + S+     G +    
Sbjct: 73  LQLRHFNFDVPILIL-GFTPFELSEQVV-ENDISQTVYTYEQAYYLSQAAQKIGKNAKIH 130

Query: 126 LQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSVQLE 180
           ++VDTG  R+G L   E++    N       +L  I SH + ADDP     +H   ++ E
Sbjct: 131 IKVDTGMGRIGFLCCDESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFMKFE 190

Query: 181 RFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
           +F   ++       YK I    A+SS  +  P Y   + R G+ LYG      + +   +
Sbjct: 191 KFVKELNKNGVYFKYKHI----ANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHISI 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+  T  G    +  
Sbjct: 247 KPVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGF--TRIGSSQRYV- 303

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                    IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A 
Sbjct: 304 --------LIKGEFAKVIGNICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAE 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+++     R  + Y
Sbjct: 356 QIGTINYEIVCSFSKRIPRVY 376


>gi|241895832|ref|ZP_04783128.1| possible alanine racemase [Weissella paramesenteroides ATCC 33313]
 gi|241870875|gb|EER74626.1| possible alanine racemase [Weissella paramesenteroides ATCC 33313]
          Length = 522

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 166/372 (44%), Gaps = 29/372 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I   A++ N   +  L+G     A+VK NAYG G  ++  A  +A V  F V +++EG
Sbjct: 163 IEISENAIQKNIAVIRELTGAHHFIAIVKANAYGHGMAQVLTAAKHANVDGFGVATIDEG 222

Query: 69  VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR Y     IF+L G+ P      +    LIPV++S   L      +S   S   ++ 
Sbjct: 223 IWLRQYGILEPIFIL-GVTPVTYVDDLVKYQLIPVVTSEAWLNAAVNKLSSQASLVISIG 281

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTL 185
           VDTG  R+G+   + L       N+   QL L  I  H A AD+        Q++ +  L
Sbjct: 282 VDTGMGRIGIRHHDELQRVVEKINQT-DQLILKGIGMHFATADEKDEAYYQKQVQTWHEL 340

Query: 186 ISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEA 240
           +      + I   LA+S+  L          R G ++YG   + K   +  +   +T +A
Sbjct: 341 VDDLPLPQHIWYHLANSATALWHEQPSRDAIRVGAAMYGFNPSGKEMLASQLTPALTLKA 400

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ +++A AG  +SYG   +  +   I    +GYADGY   L G+             G
Sbjct: 401 ELVHVKQAEAGASISYGATYQTKQPEWIGTLPLGYADGYARQLQGM------------YG 448

Query: 301 FI-KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
            +  G  V I+G+I MD  M  + + + I  G  I + G     +I L D+A    T  Y
Sbjct: 449 LLPDGRHVEIIGRIAMDQLMVRLPEEMPI--GTVITLIGKAGDEEITLVDLAERLNTIPY 506

Query: 356 DLLVRIGTRYAK 367
           ++   + TR  +
Sbjct: 507 EIATSLSTRLPR 518


>gi|283768393|ref|ZP_06341305.1| alanine racemase [Bulleidia extructa W1219]
 gi|283104785|gb|EFC06157.1| alanine racemase [Bulleidia extructa W1219]
          Length = 362

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 171/373 (45%), Gaps = 29/373 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH   +   +IDL  +K+N   + +        A++K NAYG G  +++  L   G+   
Sbjct: 1   MHRQTWF--EIDLEKIKHNVQQVQSFQ-QKEVMAILKANAYGCGDIQLSKQLEMIGIHFI 57

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V+SV+E + LR +  Q ++ VL G +    + +   ++     S   +  +++    G+
Sbjct: 58  GVSSVDEALVLRKHGFQGKLLVLGGTNIEDLETLIQNHITVTAYSEEWIEKFTQHDLTGL 117

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           S    L++DTG NR+G    +      +    +  Q+  I +H   +D    +  + Q +
Sbjct: 118 S--IHLKIDTGMNRIGFDNADEAKKALSHLLDQNAQVEGIFTHYYQSDQDEKNT-ARQFK 174

Query: 181 RFRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
            F+ ++++    +  I A   S + +    N+   + R GI+LYG +        +Q  +
Sbjct: 175 DFKKIVTYLNHSFSYIHAD-NSDASLYFQDNF-TNMVRLGIALYGYS---THHTGLQEAL 229

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   + I+I+    GE + YG   +   + +IA   IGYADG               +  
Sbjct: 230 SLYTKPIMIKVVHPGETIGYGATYRAQEEEIIATLPIGYADGL------------LRINQ 277

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G K ++ G    I+G+I MD  M  +   +S+E  D ++IFG  I L+ +AL + T +Y+
Sbjct: 278 GRKVYVNGQYGTIVGRICMDQCMVKLEQKISLE--DTVEIFGSHISLNQMALETNTISYE 335

Query: 357 LLVRIGTRYAKFY 369
           ++  I  R  + Y
Sbjct: 336 IISLITPRVTRVY 348


>gi|208434844|ref|YP_002266510.1| alanine racemase, biosynthetic [Helicobacter pylori G27]
 gi|226711047|sp|B5Z7U5|ALR_HELPG RecName: Full=Alanine racemase
 gi|208432773|gb|ACI27644.1| alanine racemase, biosynthetic [Helicobacter pylori G27]
          Length = 377

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 181/386 (46%), Gaps = 42/386 (10%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR + P+  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFPKTPILIL-GYSPNTNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-----QLSLIISHLACADDPSSHVNSVQLE 180
           L++DTG +RLGL      +F      KK+      ++  I +HL+ AD         Q++
Sbjct: 127 LKIDTGMHRLGLE----PNFKSIEIIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMK 182

Query: 181 RFRTLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKS 229
            F   +     + IE       +S+GIL       N    L RPGI LYG   ++++ +S
Sbjct: 183 AFNAFLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKES 242

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L 
Sbjct: 243 CPTILKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALG 299

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD- 345
           +    +        I   + P++GK+ MD     + D  + E GD + +FG    + +D 
Sbjct: 300 NRIQVA--------INNQLAPLIGKVCMDQCFVKLNDIQAKE-GDEVILFGDKSARANDA 350

Query: 346 --VALASGTTNYDLLVRIGTRYAKFY 369
             +A    T  Y+ +  +  R  + Y
Sbjct: 351 SEIAALLNTIAYETISTLSKRLERVY 376


>gi|332523529|ref|ZP_08399781.1| alanine racemase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314793|gb|EGJ27778.1| alanine racemase [Streptococcus porcinus str. Jelinkova 176]
          Length = 368

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 172/375 (45%), Gaps = 36/375 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL  ++NN  ++   +  + +  AVVK NAYG G  +++ A+ +  V  + V++++E +
Sbjct: 13  VDLKVIQNNIKAVQGHIPKDTKIYAVVKANAYGHGAVEVSKAI-DKEVDAYCVSNLDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQV 128
           +LR       I VL  +      +  +  +   ++S   L      +   +++ +  ++V
Sbjct: 72  ELRQAGISKEILVLGVVLADDLLLAIENQITITVASQEWLDDAQAFLGGDLTNLHVHVKV 131

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLII----SHLACADDPSSHVNSVQLERFR 183
           D+G  R+G+ SL EA     +     L Q  +I+    +H A AD+  +     QL  F 
Sbjct: 132 DSGMGRIGVRSLAEA-----DQLIAHLRQAKVIVDGIFTHFATADEADTRKFETQLNFFT 186

Query: 184 TLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
            L++H  YK      ++S+  L   +  F   R GI++YG      ++N  +P++  ++ 
Sbjct: 187 DLVNHLTYKPALVHASNSATSLWHSDTIFNAVRLGIAIYGSNPSGSELNLPYPLKPALSL 246

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +R++ +++  AG+ V YG     T    +    IGYADG+   L G +           
Sbjct: 247 RSRLVHVKEIHAGDTVGYGATYTATETEFVGTIPIGYADGWTRDLQGFEV---------- 296

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354
              I G    I+G+++MD     +      E+G  + + G     +I   D+A   GT N
Sbjct: 297 --LIDGQFCQIIGRVSMDQITVRLPKVY--EIGKLVTLIGTSGDQEITATDLAEKKGTIN 352

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  +  R  + Y
Sbjct: 353 YEVLCLLSDRIPREY 367


>gi|150009966|ref|YP_001304709.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Parabacteroides distasonis ATCC
           8503]
 gi|255012771|ref|ZP_05284897.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. 2_1_7]
 gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503]
          Length = 821

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 173/377 (45%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N++   + L    +   +VK   YG G  ++A  L         V   +E
Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGV-SHP 123
           G +LR       I V+   +P      ++F+ +L P + S   L     +    G+ S+P
Sbjct: 523 GAELRKEGISIPIIVM---NPEFSSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACAD----DPSSHVNSVQ 178
             +++DTG +RLG   ++           + G ++  + SHLA +D    D  +H    Q
Sbjct: 580 IHIKIDTGMHRLGFQPEDVPAICER-LRAQSGVIARSVFSHLAGSDSYVFDDFTHQ---Q 635

Query: 179 LERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           L++F            YK I+  L +S+GI     Y   + R GI LYG +    K   +
Sbjct: 636 LDKFTKAAGELESGLEYKVIKHIL-NSAGIERFAAYQMDMVRLGIGLYGVSASGQKG--L 692

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V T +  I+ I+   AG+ + Y     + RDS IA+  IGYAD       GLD   S 
Sbjct: 693 RNVSTLKTTILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYAD-------GLDRHFSN 745

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
               GG+  I G   PI+G I MD  M D+TD +  + GD + IFG ++ + +++    T
Sbjct: 746 G---GGEVLINGQRCPIIGNICMDACMIDVTD-IHAQEGDAVIIFGDELPVSELSDKLKT 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I  R  + Y
Sbjct: 802 IPYEILTSISPRVKRVY 818


>gi|269128462|ref|YP_003301832.1| alanine racemase [Thermomonospora curvata DSM 43183]
 gi|268313420|gb|ACY99794.1| alanine racemase [Thermomonospora curvata DSM 43183]
          Length = 375

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 167/385 (43%), Gaps = 34/385 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            E ++ ++DL A++ N   +   +G A T A+VK   YG G  + A A    G     V 
Sbjct: 2   REPVQARVDLDAIRANVALLRERAGGAETMAMVKAEGYGHGLVEAARAALEGGAGWLGVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
            V E ++LR       + V+      P +E +    +L    S              G  
Sbjct: 62  RVAEALRLRAAGITVPVLVVMATRGEPFEEAVAAGVDLT-AGSGWQARRLAEAAERAGRP 120

Query: 122 HPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178
               L+ DTG +R G ++ +           +  G L +  ++SHLACAD+P     + Q
Sbjct: 121 ARVHLKADTGMSRGGATMADWPATVEAALAAQAAGHLRVVGVMSHLACADEPGHPSIARQ 180

Query: 179 LERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---- 229
           L  F+  + + +  G+      L++S+  L  P   + L RPGI++YG T          
Sbjct: 181 LAVFKEAVEYAEKAGVRPQVRHLSNSAATLTLPEARYDLVRPGIAIYGLTPVPQMGTFGL 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            P  T+V   A +  +++  AG  VSYG      R++ + + A GY DG P         
Sbjct: 241 RPAMTLV---AELAAVKRVPAGSGVSYGHTYVTERETTLGLVAAGYGDGVP--------R 289

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
           H  S+    +    G    I G++ MD  + D+ D  +   G+ + +FGP    +    +
Sbjct: 290 HGSSLL---EVLAGGRRRRIAGRVCMDQFVIDLGDD-TASPGEEVLLFGPGDHGEPTAQE 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
            A A GT +Y+++ RIGTR  + Y+
Sbjct: 346 WAQALGTISYEIVTRIGTRVPRVYS 370


>gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
 gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
          Length = 821

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 173/377 (45%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N++   + L    +   +VK   YG G  ++A  L         V   +E
Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGV-SHP 123
           G +LR       I V+   +P      ++F+ +L P + S   L     +    G+ S+P
Sbjct: 523 GAELRKEGISIPIIVM---NPEFSSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACAD----DPSSHVNSVQ 178
             +++DTG +RLG   ++           + G ++  + SHLA +D    D  +H    Q
Sbjct: 580 IHIKIDTGMHRLGFQPEDVPAICER-LRAQSGVIARSVFSHLAGSDSYVFDDFTHQ---Q 635

Query: 179 LERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           L++F            YK I+  L +S+GI     Y   + R GI LYG +    K   +
Sbjct: 636 LDKFTKAAGELENGLEYKVIKHIL-NSAGIERFAAYQMDMVRLGIGLYGVSASGQKG--L 692

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V T +  I+ I+   AG+ + Y     + RDS IA+  IGYAD       GLD   S 
Sbjct: 693 RNVSTLKTTILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYAD-------GLDRHFSN 745

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
               GG+  I G   PI+G I MD  M D+TD +  + GD + IFG ++ + +++    T
Sbjct: 746 G---GGEVLINGQRCPIIGNICMDACMIDVTD-IHAQEGDAVIIFGDELPVSELSDKLKT 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I  R  + Y
Sbjct: 802 IPYEILTSISPRVKRVY 818


>gi|229059775|ref|ZP_04197152.1| Alanine racemase [Bacillus cereus AH603]
 gi|228719604|gb|EEL71205.1| Alanine racemase [Bacillus cereus AH603]
          Length = 408

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 164/378 (43%), Gaps = 30/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A +   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L    ++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLQGIDEVANHLQKKVRIH 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTNMQTNLFEKA 207

Query: 186 IS-------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
           ++       H+  I +S  +S+G +   N    + R GI +YG        H    +Q  
Sbjct: 208 VNTAEELGIHFPYIHSS--NSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVASLQPA 265

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++++  ++ A     VSYG     T +  IA   IGYADGY   LS           
Sbjct: 266 LSLKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN---------- 315

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS----G 351
             G   I G  VP++G++ MD  M D+T+++ ++VGD +  +G   + +          G
Sbjct: 316 -KGHALINGVRVPVIGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQGEEEIAVEEIADMLG 374

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   +  R  + Y
Sbjct: 375 TINYEVTCMLDRRIPRVY 392


>gi|229011407|ref|ZP_04168598.1| Alanine racemase [Bacillus mycoides DSM 2048]
 gi|229166972|ref|ZP_04294719.1| Alanine racemase [Bacillus cereus AH621]
 gi|228616600|gb|EEK73678.1| Alanine racemase [Bacillus cereus AH621]
 gi|228749924|gb|EEL99758.1| Alanine racemase [Bacillus mycoides DSM 2048]
          Length = 408

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 164/378 (43%), Gaps = 30/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A +   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L    ++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLQGIDEVANHLQKKVRIH 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTNMQTSLFEKA 207

Query: 186 IS-------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
           ++       H+  I +S  +S+G +   N    + R GI +YG        H    +Q  
Sbjct: 208 VNTAEELGIHFPYIHSS--NSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVASLQPA 265

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++++  ++ A     VSYG     T +  IA   IGYADGY   LS           
Sbjct: 266 LSLKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN---------- 315

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS----G 351
             G   I G  VP++G++ MD  M D+T+++ ++VGD +  +G   + +          G
Sbjct: 316 -KGHALINGVRVPVIGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQGEEEIAVEEIADMLG 374

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   +  R  + Y
Sbjct: 375 TINYEVTCMLDRRIPRVY 392


>gi|302205563|gb|ADL09905.1| alanine racemase [Corynebacterium pseudotuberculosis C231]
 gi|308275798|gb|ADO25697.1| Alanine racemase [Corynebacterium pseudotuberculosis I19]
          Length = 370

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 172/381 (45%), Gaps = 34/381 (8%)

Query: 6   FLRLKIDLTALKNNWHSMN--ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            L  +IDL A+ +N   +   A +  A+   VVK + Y  G  ++A  +   G   F V 
Sbjct: 3   LLEARIDLAAIAHNTRLIKDKAAAQGAQLMCVVKADGYNHGAVEVATVMEENGADQFGVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           ++ EG+ LR    ++ I   +   P Q+    I  + +L  +      L     L+    
Sbjct: 63  TIGEGLALREGGIESSILS-WIWSPEQDLGAAITAEIDLAAI-----SLEHVKALVRASE 116

Query: 121 SH-----PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           S+        ++VDTG +R G+  Q+  +      + +  Q++ + SH + AD+  S   
Sbjct: 117 SYGKKPVRVTVKVDTGLHRSGVDKQDWRESFCMLRDAENIQVTGVFSHFSSADESDSTET 176

Query: 176 SVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q   F   I   +  G+E     +A+S   L  P+ +F + RPG++LYG      +SH
Sbjct: 177 EQQERAFLNAIELGRSLGLELPVNHIANSPATLNRPDLYFDMVRPGLALYGHEPIPGESH 236

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++   R+ +++    GE  SYG   +  +D  + V  +GYADG P +  G     
Sbjct: 237 GLREAMSWVGRVTVVKPIARGEGTSYGLTWRAEQDGYLCVVPVGYADGLPRSAQG----- 291

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVAL 348
              + +GG+ +      P +G++ MD  +  + ++   +  GD   I GP  +   ++A 
Sbjct: 292 HLEITIGGRRY------PQVGRVCMDQIVVALGENPYGVAQGDEAVILGPTGMTATELAT 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A GT NY+L+ R   R  + +
Sbjct: 346 AMGTINYELVCRPCGRTVRVF 366


>gi|60594046|pdb|1XQK|A Chain A, Effect Of A Y265f Mutant On The Transamination Based
           Cycloserine Inactivation Of Alanine Racemase
 gi|60594047|pdb|1XQK|B Chain B, Effect Of A Y265f Mutant On The Transamination Based
           Cycloserine Inactivation Of Alanine Racemase
 gi|60594048|pdb|1XQL|A Chain A, Effect Of A Y265f Mutant On The Transamination Based
           Cycloserine Inactivation Of Alanine Racemase
 gi|60594049|pdb|1XQL|B Chain B, Effect Of A Y265f Mutant On The Transamination Based
           Cycloserine Inactivation Of Alanine Racemase
          Length = 388

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 162/386 (41%), Gaps = 39/386 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N+F R    ++DL A+ +N  ++  L   +    AVVK NAYG G  ++A     AG   
Sbjct: 2   NDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASR 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR    +A I VL    P    +     +   +     L   S L S  
Sbjct: 62  LAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGP 121

Query: 120 VSHPYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + L +DTG  RLG+  +E      AL   H  F      L  + +H A AD+ ++ 
Sbjct: 122 FPIHFHLXMDTGMGRLGVKDEEETKRIVALIERHPHF-----VLEGLYTHFATADEVNTD 176

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTD----KIN 227
             S Q  RF  ++            A+S+  L  P+  F + R GI++YG       K  
Sbjct: 177 YFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPL 236

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P++   +  +R++ ++K   GE VS+G       +  I    IGYADG+   L  L 
Sbjct: 237 LPYPLKEAFSLHSRLVHVKKLQPGEKVSFGATYTAQTEEWIGTIPIGYADGW---LRRLQ 293

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             H           + G   PI+G+I MD  M  +   L   VG  + + G      I +
Sbjct: 294 HFHV---------LVDGQKAPIVGRICMDQCMIRLPGPLP--VGTKVTLIGRQGDEVISI 342

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DDVA    T NY++   I  R  + +
Sbjct: 343 DDVARHLETINYEVPCTISYRVPRIF 368


>gi|312880319|ref|ZP_07740119.1| alanine racemase [Aminomonas paucivorans DSM 12260]
 gi|310783610|gb|EFQ24008.1| alanine racemase [Aminomonas paucivorans DSM 12260]
          Length = 372

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 155/368 (42%), Gaps = 34/368 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+++ L  ++ N+ S+ +  G  A+   VVK NAYG G   +A AL  AG   F V + E
Sbjct: 6   RMEVHLGRIQENYRSIRSHVGARAQVMGVVKANAYGTGMVPVASALREAGCTRFAVATPE 65

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP--VISSVPQLTFYSKL----MSCGV 120
           E ++LR       I V+     G         L+   V ++V  L+F   L       G 
Sbjct: 66  EALELRRCGIGDPILVM-----GASSADAAGELVAQDVAATVADLSFAQVLSREATRQGR 120

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              + L+VDTG  R+G   QE                  + +H A AD+        Q  
Sbjct: 121 PARFHLKVDTGMGRIGFLPQELPSLLPELLALGNLDFEGVFTHFATADEERLDYTWTQFR 180

Query: 181 RFRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
           RF  ++     +G+   L    +S+ ++  P  H    RPG+ LYG   +       P+ 
Sbjct: 181 RFGDVLEELRDRGVGVRLRHACNSAALMRCPEMHLDAVRPGVILYGLRPSPGCPVPFPLS 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
                +  +  +R+   G  VSYG +        +AV  +GY DGY   L+G        
Sbjct: 241 PAFEVKTSVAALRELPPGSGVSYGLRYVTRGRERLAVLPLGYRDGYVRALAG-------- 292

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G+ VP++G I MD  + D+T    + VGD + + G      I+ +++A  
Sbjct: 293 ---KAEVLILGHRVPVVGTICMDQCLVDVTSLPEVCVGDEVVLLGRQGDRSIEAEEMARW 349

Query: 350 SGTTNYDL 357
            GT  Y++
Sbjct: 350 LGTIVYEI 357


>gi|194467667|ref|ZP_03073654.1| alanine racemase [Lactobacillus reuteri 100-23]
 gi|194454703|gb|EDX43600.1| alanine racemase [Lactobacillus reuteri 100-23]
          Length = 375

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 166/379 (43%), Gaps = 36/379 (9%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L ++L AL++N       L  N++  AVVK NAYG G   +A     +G     V  ++E
Sbjct: 11  LIVNLDALRHNIQEQKKVLPENSKILAVVKANAYGNGLIPVAQTAMTSGASGLCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A   VL GI P ++ +I     + + + S+  L  Y +L    V+ P   
Sbjct: 71  ALELRDNGIEAMTLVL-GITPVEDALIAAQAGVSLTVGSLDWLEQYHRLAQ--VAKPKKP 127

Query: 126 ----LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L +D+G  R+G +  +         +    +   + +H A AD P  +  + Q++R
Sbjct: 128 LKVHLGIDSGMGRIGFTAVDTFKQAVKLLDNPEFEFEGMFTHFATADSPDENYFNQQVQR 187

Query: 182 FRTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQT 234
           +   ++    +   +    S++G+           R GIS+YG    G D +  +  +Q 
Sbjct: 188 WHQFVASLDELPPYVHMANSATGLWHREKITANTVRMGISMYGQNPSGRD-LKLTLDLQP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V +  + I  +++  AG  VSYG      +D  +A   IGYADGYP  ++G         
Sbjct: 247 VSSLVSSISFVKQLKAGRSVSYGATYTAEQDEWLATLPIGYADGYPRCMTGY-------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
               K  + G    I G++ MD  M  +       VG  + + G     +I   D+A  +
Sbjct: 299 ----KVLVDGQFCDIAGRVCMDQMMVRLPKYYP--VGTPVVLMGKSGDQEITATDLAEQA 352

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 353 GTINYEILTNISNRVHRIY 371


>gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145]
 gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145]
          Length = 818

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 164/379 (43%), Gaps = 39/379 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L A+++N +   + L    +   +VK   YG G  +IA  L    V    V   +E
Sbjct: 458 LEINLNAMEHNLNYYRSKLKPGVKLMTMVKAFGYGSGSFEIANLLQFNHVDYLSVAYADE 517

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS-HPYA 125
           GV LR       I V+       E I+    L P I S   L  +S  L + G+S +P  
Sbjct: 518 GVTLRQNGITLPIMVMSPEISSLEAIV-KHQLEPEIFSQSTLEAFSNYLQNAGISNYPIH 576

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDP-------------S 171
           L++DTG +RLG  + + LDF  +    K   ++  + SHL  ++ P              
Sbjct: 577 LKLDTGMHRLGF-MPDELDFIADFIKTKNTVKIQSVFSHLVASESPIHDDFTRQQISIIK 635

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
              N ++     T I H       + ++S I   P   F + R GI LYG  +       
Sbjct: 636 DFTNKLEQRIGYTFIKH-------ICNTSAITRWPEAQFDMVRLGIGLYGVDNFSEDDEN 688

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-SGLDSEH 290
           ++ V   +  +  I++   GE + YG +  +  D  IA   IGYADG+   L +G+    
Sbjct: 689 LEQVAVLKTTVSQIKQIKRGETIGYGRRGVMPEDGQIATVKIGYADGFLRALGNGV---- 744

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                  G  FI G  V  +G I MDM M +IT   +++ GD + +F    +L  +A   
Sbjct: 745 -------GSMFINGEEVFTIGNICMDMCMLNITGK-NVKEGDEVIVFNSQKRLYKLAEKL 796

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++L  +  R  + Y
Sbjct: 797 NTIPYEILTSVSQRVKRVY 815


>gi|171463622|ref|YP_001797735.1| alanine racemase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193160|gb|ACB44121.1| alanine racemase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 381

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 161/363 (44%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   A ++N + +  ++  ++  +V+K  AYG   +     L +     F +  +++   
Sbjct: 27  IHTAAFQHNLNRVREMAPESKIWSVIKARAYGHCFDAALKGLIS--TDGFALLDIQDAAW 84

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
           LR +  + RI +L G  H  +     +     V+    Q+ +           P+   L+
Sbjct: 85  LREHGWKGRILLLEGFFHENELSRAEELACDLVVHCGAQVEWLESFKGKN-RKPFNVFLK 143

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV--QLERFRTL 185
           ++TG NRLG    +     H       G     ++H A AD   + + SV  Q E F   
Sbjct: 144 MNTGMNRLGFKPDDYRTVFHRL--HAAGYHMHHMTHFANADQ-VNRIPSVGSQQELFNQT 200

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEAR 241
           I   +G   SLA+S+ IL   N      RPGI LYG    G     +   +Q V+   + 
Sbjct: 201 IEGLEG-ATSLANSAAILWHRNALGDWVRPGIMLYGVSPTGLHADIEHSNLQVVMQLHSE 259

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II I+    G+ + YGG+ +      I + A GYADGYP        + +P     G   
Sbjct: 260 IIDIQDLQKGDRIGYGGRYEAPEAMRIGIVACGYADGYPRHAK----DGTPVWVANGD-- 313

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
             G + P++G+++MDM   D+  + +  +G  +Q++G  + +DDVA  S TT Y+LL  +
Sbjct: 314 -HGVICPLVGRVSMDMLAIDLRHAPNASIGTTVQLWGDKVPVDDVAQMSDTTGYELLCAV 372

Query: 362 GTR 364
             R
Sbjct: 373 APR 375


>gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36]
 gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36]
          Length = 841

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 165/387 (42%), Gaps = 42/387 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           E L  K+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L    
Sbjct: 472 EVLEKKVHETILEVNLGAMIANLNYYRGKLKPETKMVCMVKASAYGAGSYEIAKTLQEHH 531

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYS 113
           V    V   +EG +LR     A I ++   +P     K +FD  L P + S   L     
Sbjct: 532 VDYLAVAVADEGSELRKAGITANIIIM---NPEMTAFKTMFDYKLEPEVYSFHLLDALIK 588

Query: 114 KLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS- 171
           +    G+++ P  +++DTG +RLG +L++          +       + SHL  +D    
Sbjct: 589 EAEKEGITNFPIHIKLDTGMHRLGFALEDMPRLIERLKGQNAVIARSVFSHLVGSDSQQF 648

Query: 172 SHVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
                 Q+E F       +G     I   + +S+GI   P   F + R GI LYG  + I
Sbjct: 649 DSFTRRQIEMFEKASMELQGAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYG-VNPI 707

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           + S  M  V T +  I+ IR     + V Y  +  LTR S IA   IGYADG    L   
Sbjct: 708 DNS-IMNNVSTLKTTILQIRDVPEEDTVGYSRKGHLTRPSRIAALPIGYADGLNRHL--- 763

Query: 287 DSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
                      G G     + G     +G I MD+ M D+TD +  + GD ++IFG  + 
Sbjct: 764 -----------GNGHAYCLVNGQRAVYVGNICMDVCMIDVTD-IDCKEGDSVEIFGNHLP 811

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  ++ A  T  Y++L  + TR  + Y
Sbjct: 812 ITVLSDALATIPYEVLTSVSTRVKRVY 838


>gi|289674439|ref|ZP_06495329.1| alanine racemase [Pseudomonas syringae pv. syringae FF5]
          Length = 271

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 139/278 (50%), Gaps = 22/278 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL  A    F V  +EE
Sbjct: 5   RAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-QAQADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR    +A + +L G     E   I + +L  V+ +  QL    +    G      L
Sbjct: 63  ALELRAAGIRAPVLLLEGFFEADELAQIVEHDLWTVVHATWQLEAIEQ-ARLGKPITVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLERF 182
           ++DTG +R+GL   E        + + L  G+++ I+  SH + AD+ +S  +  QL  F
Sbjct: 122 KLDTGMHRVGLHPHE----YQAGYQRLLATGKVARIVLMSHFSRADELNSGCSDEQLAVF 177

Query: 183 RTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVV 236
            T     KG+  E SL +S  +L  P      +RPGI LYG T   +++HP+    Q V+
Sbjct: 178 ETF---RKGLAAETSLKNSPAVLGWPQIPSDWSRPGIMLYGAT-PFDQAHPLADRLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
           T E++II +R+   GE V YG      R S I V A+G
Sbjct: 234 TLESKIISVRELPVGEPVGYGATFVCDRPSRIGVVAMG 271


>gi|164688105|ref|ZP_02212133.1| hypothetical protein CLOBAR_01750 [Clostridium bartlettii DSM
           16795]
 gi|164602518|gb|EDQ95983.1| hypothetical protein CLOBAR_01750 [Clostridium bartlettii DSM
           16795]
          Length = 389

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 171/382 (44%), Gaps = 36/382 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL+  K+N   +  L   + +   VVK NAYG G   +A    + G++ F V  +EE
Sbjct: 21  VEIDLSKFKHNIEVIKELLHDDVQIVGVVKANAYGHGDVVVAKYFESLGIKYFAVACIEE 80

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            +KLR    +  I +L      Q+  +   +L   +++       SKL   G    Y ++
Sbjct: 81  AIKLREGGIKGDIIILGWTPSCQKDDLIKYDLCQTLANEAYAEELSKL--PGTVRGY-VK 137

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERFRT 184
           ++TG NRLG   +E +D     +     ++  I SHL+ +D   +        Q+  F  
Sbjct: 138 LNTGMNRLG-EPKEHMDLIEKIYTLDNIKVEGIFSHLSRSDSKLEADIVFTKQQIANFDY 196

Query: 185 LISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKINKSHP 231
           +I+  K  G E     L +S GI+   + H+ L RPGI LYG          D +     
Sbjct: 197 VINKLKADGFELGNVHLQNSYGIVTYRDLHYDLARPGIILYGVPSDPLDDTLDNLPNGMK 256

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            +  ++   ++ +++    G+ V YG     T    +A   IGYADG    LS L S+  
Sbjct: 257 FEAPLSLRCKVAMVKDVTPGQSVGYGNNFTATETIKVATVTIGYADG----LSRLVSKKD 312

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
             V + GK     Y   I G + MD  M D++  + ++ GD + + G D    + ++ ++
Sbjct: 313 MKVLVNGK-----YARQI-GNVCMDQMMIDVS-GIDVKEGDTVTLIGQDGDNYLSVNQIS 365

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
           L S T   + L  IG R  + Y
Sbjct: 366 LLSNTITNETLSVIGERVKRVY 387


>gi|224531812|ref|ZP_03672444.1| alanine racemase [Borrelia valaisiana VS116]
 gi|224511277|gb|EEF81683.1| alanine racemase [Borrelia valaisiana VS116]
          Length = 366

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 27/354 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+  KL+      +I +   + 
Sbjct: 26  GEKEIVATLKADAYGHGLINIFKFLKSKKINYFGLSNIEDAKKLKKIDKSIKILMYIKVD 85

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGLSLQEALD 144
             + K +    L+P ++    L    K   C +        L++D G NR G+ +  AL+
Sbjct: 86  KKEIKNLIKLELLPFVADFEYLFLIEK--ECALQKKKIKVHLKIDIGMNRYGIKIDSALE 143

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  + SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 144 IATYIQNSKFLELEGVCSHLPTTENFKT--TQKQIEQFLFFLETLKQKNINPKFVHISNS 201

Query: 201 GILLG--PNYHFQLTRPGISLYGGTD-KINKSHPM--QTVVTAEARIILIRKALAGELVS 255
           G +L    N  F + RPG+ LYG +    NK   +  + V+   +++I I+    GE +S
Sbjct: 202 GHILNYKLNPQFNMVRPGLILYGYSPFPKNKKTILNFKPVLNLFSKVIFIQNVKKGEKIS 261

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +  +D  + +  IGY DG P  +      ++   FL     I      I GK+ M
Sbjct: 262 YSGIFQAKKDMKVGIIPIGYFDGIPQNI------NNNFYFL-----INNKKCKIRGKVCM 310

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++T+ +I   L ++ G  ++I    + +D ++  S  +NY+LL  IG    K Y
Sbjct: 311 NITIVEIPKDLKVKTGSKVEIVSEKLSIDKMSKFSKRSNYELLCNIGKYENKKY 364


>gi|219670838|ref|YP_002461273.1| alanine racemase [Desulfitobacterium hafniense DCB-2]
 gi|219541098|gb|ACL22837.1| alanine racemase [Desulfitobacterium hafniense DCB-2]
          Length = 394

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 158/366 (43%), Gaps = 58/366 (15%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + I+L A+ NN+  +   LS  AR  AVVK +AYGLG   +A  L   G   F VT+VEE
Sbjct: 6   IDINLDAIANNYREVTQQLSPAARVMAVVKADAYGLGAVPVAQTLQKLGCPAFAVTTVEE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           G+ LR +  +  I VL  +   Q       +L   +S    L  +  + +  G+     L
Sbjct: 66  GLILRQHGVEGIILVLGPVSAEQMAEALTGDLQLTLSDFHMLREWETVAAGLGIEAKVHL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL------------IISHLACADDPSSHV 174
           +++TG  R G             F K+ G+L+             + +HLA A       
Sbjct: 126 KLETGMGRTGF------------FEKEWGELAAQLKKSPHITPVGVYTHLARAAQRDRAY 173

Query: 175 NSVQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
              Q+E F+  ++      + G+   + +S+  L  P++H+   R G  L G        
Sbjct: 174 TRQQVESFQRGVNLLEEQGFAGLWKHVCNSAAFLDYPDWHYDFIRTGTLLIGHIPAPAFA 233

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q    A+ARI+ +R+   G  V Y    +   ++ +AV  +GYADG+     G+ 
Sbjct: 234 GKLKLQDPWVAKARIVSLRRVPIGTFVGYQSIYRTKAETQLAVIPVGYADGF-----GVQ 288

Query: 288 SEHSPS------------------VFLGGKGFI-KGYMVPILGKITMDMTMFDITDSLSI 328
               P                   +++G +  I +G+ VP+ GKI M +T+ D+ + L  
Sbjct: 289 PHFVPQGVWDFIKIVIKNFLALCRIYIGQESVILQGHRVPVAGKIGMQLTVLDVGN-LPC 347

Query: 329 EVGDYI 334
           E GD +
Sbjct: 348 ETGDEV 353


>gi|313889680|ref|ZP_07823323.1| alanine racemase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121977|gb|EFR45073.1| alanine racemase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 368

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 174/374 (46%), Gaps = 34/374 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL A++NN  ++   +    +T AVVK +AYG G  +++ A+ +  V  + V++++E +
Sbjct: 13  VDLEAIRNNIKAVQGHIPKGTKTYAVVKADAYGHGAVEVSKAI-DKEVDAYCVSNLDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQV 128
           +LR       I VL  +      +  +  +   ++S   L      +   +++ +  ++V
Sbjct: 72  ELRQAGISKEILVLGVVLADALLLAIENQITVTVASQEWLDDAQAFLGEDLTNLHVHVKV 131

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  R+G+ SL EA          K+  +  I +H A AD+  +     QL  F  L+S
Sbjct: 132 DSGMGRIGVRSLAEANQLIAGLRQAKVA-VDGIFTHFATADEADTTKFQSQLNFFTDLVS 190

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAE 239
                   + AS +++S  L   +  F   R GI++YG    G+D +   +P++  ++  
Sbjct: 191 RLTDKPDLVHASNSATS--LWHSDTIFNAVRLGIAIYGLNPSGSD-LKLPYPLKPSLSLR 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R++ +++  AG+ V YG     T D  I    IGYADG+   L G +            
Sbjct: 248 SRLVHVKEIQAGDTVGYGATYTATEDECIGTIPIGYADGWTRDLQGFEV----------- 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             I G    I+G+++MD     +  +   E+G  + + G     +I   DVA   GT NY
Sbjct: 297 -LIDGQFCQIIGRVSMDQMTVRLPKTY--EIGKLVTLIGTSGDQEITATDVAEKKGTINY 353

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +  R  + Y
Sbjct: 354 EVLCLLSDRIPRKY 367


>gi|297564802|ref|YP_003683774.1| alanine racemase [Meiothermus silvanus DSM 9946]
 gi|296849251|gb|ADH62266.1| alanine racemase [Meiothermus silvanus DSM 9946]
          Length = 373

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 167/366 (45%), Gaps = 15/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+++L +L +N   + + +  ++   +VK NAYG G   +   L   G     V +V EG
Sbjct: 6   LEVNLDSLAHNVALLRSKAPASQLVGIVKANAYGHGAVWVGRELLRLGAWGLAVATVSEG 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQ 127
            +LRL   Q R+ ++  +HP Q +   +T+LI  +S++       +   + G      L+
Sbjct: 66  RELRLGGVQGRVLLMGSLHPDQAREALETDLIASLSTLEGAQALDAAARALGKIAEVHLE 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  R+G   +EA             +++ + SH A A++ +     +QL  FR +  
Sbjct: 126 FDTGMGRVGFPWEEAQQVKEALEQFSHLKVTGLYSHFADAEE-NLEFTYMQLANFRRVRE 184

Query: 188 HY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            +  G    LA+S+G+    +  F   RPGI+LYG    +     ++ +    A+  L++
Sbjct: 185 VWGPGYFCHLANSAGVFNFRDDSFDAIRPGIALYGLLPNLG----LKPIARLLAKPTLVK 240

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   G  + Y G         IA   +GYADG P  +      +  +V L      +G +
Sbjct: 241 QLPPGRKIGYSGLYTTQDHEWIATLPVGYADGMPRLVY-----NRATVRLLQPSPEEGRL 295

Query: 307 V-PILGKITMDMTMFDITDSLSIE-VGDYIQI-FGPDIKLDDVALASGTTNYDLLVRIGT 363
           + P++G+I+MD     I   + ++ V + +   F P   L   A  +GT +Y+  VR+  
Sbjct: 296 ICPVVGRISMDQITVRIPGPVDLDTVFEVVTADFDPGSSLWGWAEMTGTVSYEPAVRLAA 355

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 356 RLPRVY 361


>gi|308184724|ref|YP_003928857.1| alanine racemase [Helicobacter pylori SJM180]
 gi|308060644|gb|ADO02540.1| alanine racemase [Helicobacter pylori SJM180]
          Length = 377

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 181/383 (47%), Gaps = 34/383 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+H++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFHAVKSIVPKDACIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  ++ S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNANASMLVDNDLSAMVFSLEQAEVFSQMALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 IKIDTGMHRLGLEPNFKSIETIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++++ +S P  
Sbjct: 187 FLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +ARI+ IR    GE + YG       ++L+ V A+GYADG    +  L +   
Sbjct: 247 LKNVISLKARIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRIQ 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
            +        I   + P++GK+ MD     + D +  + GD + +FG    K +D   +A
Sbjct: 304 VA--------INNQLAPLIGKVCMDQCFVKLND-IEAKEGDEVILFGDKSAKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
               T  Y+ +  +  R  + Y 
Sbjct: 355 ALLNTIPYETISTLSKRLERVYV 377


>gi|225552449|ref|ZP_03773389.1| alanine racemase [Borrelia sp. SV1]
 gi|225371447|gb|EEH00877.1| alanine racemase [Borrelia sp. SV1]
          Length = 372

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 157/354 (44%), Gaps = 32/354 (9%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 32  GEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 91

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P ++    L  +S    C +        L++D G NR G+ + +AL+
Sbjct: 92  KKEIKNLIKFELVPFVADFEYL--FSIEKECALQKNKIKVHLKIDIGMNRYGIKIDDALE 149

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  + SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 150 IATYIQNSKFLELEGVCSHLPSTENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 207

Query: 201 GILLGPNY----HFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGEL 253
           G ++  NY     F + RPG+ LYG         P    + V++  ++II I+    GE 
Sbjct: 208 GHII--NYKLSPQFNMVRPGLILYGYCQSPKNKKPALNFKPVLSLFSKIIFIKNVKKGEK 265

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           +SY G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+
Sbjct: 266 ISYSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKV 314

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
            M++ + +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG +Y K
Sbjct: 315 CMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG-KYEK 367


>gi|296168767|ref|ZP_06850456.1| D-alanine racemase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896550|gb|EFG76194.1| D-alanine racemase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 394

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 175/383 (45%), Gaps = 44/383 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G A+  AVVK + YG G  + A A    G  +  V +V E + 
Sbjct: 24  VDLGAIEHNVRLLREHAGAAQVMAVVKADGYGHGATQAARAALAGGAAELGVATVAEALA 83

Query: 71  LRLYTPQARIFVLYGIHPG----QEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYA 125
           LR     A   VL  +HP     +  ++ D  +   +SS  QL          G +    
Sbjct: 84  LRAEGITAP--VLAWLHPPGIDFRPALLADVEI--AVSSERQLDELLDAARRTGRAATVT 139

Query: 126 LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++VDTG NR G+        L     +  +   +L  ++SH+  AD P + VN +Q +RF
Sbjct: 140 VKVDTGLNRNGVHPARYPSMLTALRRAVAENAIRLRGLMSHMVFADQPDNPVNDLQAKRF 199

Query: 183 RTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV-- 235
             +++     G+    A LA+SS  +  P+  F L RPG+++YG    + +   M  V  
Sbjct: 200 ADMLAQAGESGVRFEVAHLANSSATMSRPDLAFDLVRPGVAVYG-LSPVPELGGMGLVPA 258

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + L++   AGE VSYG      RD+ +A+  +GYADG               VF
Sbjct: 259 MTVKCPVALVKSIRAGESVSYGHTWTAERDTTLALLPVGYADG---------------VF 303

Query: 296 --LGGK--GFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGP----DIKLDDV 346
             LGG+    I G   P +G+I MD  + D+    + +  GD   +FGP    +    D 
Sbjct: 304 RSLGGRLEVLINGKRRPGVGRICMDQFVVDLGPGRTDVAEGDEAILFGPGGSGEPTAQDW 363

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A   GT +Y+++     R  + Y
Sbjct: 364 ADVLGTIHYEVVTSPRGRITRTY 386


>gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B]
 gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B]
          Length = 821

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 172/377 (45%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N++   + L    +   +VK   YG G  ++A  L         V   +E
Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGV-SHP 123
           G +LR       I V+   +P      ++F+ +L P + S   L     +    G+ S+P
Sbjct: 523 GAELRKEGISIPIIVM---NPEFSSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACAD----DPSSHVNSVQ 178
             +++DTG +RLG    E +         + G ++  + SHLA +D    D  +H    Q
Sbjct: 580 IHIKIDTGMHRLGFQ-PEDVPAICERLRAQSGVIARSVFSHLAGSDSYVFDDFTHQ---Q 635

Query: 179 LERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           L++F            YK I+  L +S+GI     Y   + R GI LYG +    K   +
Sbjct: 636 LDKFTKAAGELENGLEYKVIKHIL-NSAGIERFAAYQMDMVRLGIGLYGVSASGQKG--L 692

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V T +  I+ I+   AG  + Y     + RDS IA+  IGYAD       GLD   S 
Sbjct: 693 RNVSTLKTTILQIQNVPAGNSIGYSRMSYVKRDSRIAIIPIGYAD-------GLDRHFSN 745

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
               GG+  I G   PI+G I MD  M D+TD +  + GD + IFG ++ + +++    T
Sbjct: 746 G---GGEVLINGQRCPIIGNICMDACMIDVTD-IHAQEGDAVIIFGDELPVSELSDKLKT 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I  R  + Y
Sbjct: 802 IPYEILTSISPRVKRVY 818


>gi|153853243|ref|ZP_01994652.1| hypothetical protein DORLON_00637 [Dorea longicatena DSM 13814]
 gi|149754029|gb|EDM63960.1| hypothetical protein DORLON_00637 [Dorea longicatena DSM 13814]
          Length = 366

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 168/368 (45%), Gaps = 44/368 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIFVLY 84
           +  + +  AV+K + YG G  +IA  L     +  + V +++E + L+    +  + VL 
Sbjct: 6   IQKDTQMMAVIKMDGYGHGAVQIAKLLEPKDYIWGYAVATLDEAILLKDACLKKPVLVLG 65

Query: 85  GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---------LQVDTGFNRL 135
            I P Q    +DT    +I +  ++T YS  M+  VS             +++DTG  RL
Sbjct: 66  CIFPDQ----WDT----MIRNEVRMTVYSYEMAKEVSELAEAMGCKVYVHIKLDTGMARL 117

Query: 136 GLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTLISHYKGIE 193
           G  + E  +    +   KL  L +  + +H + +D+      + QL+++  +    K   
Sbjct: 118 GFQITEE-NAEEIAKISKLPNLVMEGMFTHFSKSDEADKTFTNEQLDKYLWMKEELKKRG 176

Query: 194 ASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVVTAEARIILI 245
            +      ++S+GI+     +  + R GI+ YG   +D++ K   P++  +   + +  +
Sbjct: 177 VTFQYYHCSNSAGIIDLKEANMDIVRAGITTYGMYPSDEVEKERVPLKPAMELISHVAHV 236

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +    G+ VSYGG    TR + +A   +GY DGYP +LS             G   I G 
Sbjct: 237 KWLTEGKPVSYGGTYVTTRPTKVATIPVGYGDGYPRSLSN-----------KGYVLIHGQ 285

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRI 361
             PI+G++ MD  M D+T    +E GD + IFG D    + +D +   SG  NY+ +  +
Sbjct: 286 KAPIIGRVCMDQFMVDVTAIEDVEFGDKVVIFGRDGKEFLSVDTLGELSGRFNYEFVCVL 345

Query: 362 GTRYAKFY 369
             R  + Y
Sbjct: 346 NKRIPREY 353


>gi|302872340|ref|YP_003840976.1| alanine racemase [Caldicellulosiruptor obsidiansis OB47]
 gi|302575199|gb|ADL42990.1| alanine racemase [Caldicellulosiruptor obsidiansis OB47]
          Length = 390

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 167/359 (46%), Gaps = 37/359 (10%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90
           +  AVVK +AYG G  +I+  L   GV    V  ++E ++LR +     I +L G  P +
Sbjct: 35  KIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAIIDEALQLRHFNFDVPILIL-GFTPFE 93

Query: 91  --EKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLG-LSLQEALDFT 146
             E+++ +  +   + +  Q  + SK     G      ++VDTG  R+G L  +++++  
Sbjct: 94  LSEQVV-ENEISQTVYTYEQAYYLSKAAQKIGKKAKIHIKVDTGMGRIGFLCCEQSVNTI 152

Query: 147 HNSFNKKLGQLSLIISHLACADDPS----SHVNSVQLERFRTLISH------YKGIEASL 196
            N       +L  I SH + ADDP     +H   ++ E F   ++       YK I    
Sbjct: 153 LNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFIKFENFVKELNKNGVYFKYKHI---- 208

Query: 197 ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIILIRKALAGELV 254
           A+SS  +  P Y   + R G+ LYG      + +   ++ V++ +AR+I +++   G  +
Sbjct: 209 ANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHINLKPVMSVKARVINVKEVPEGFPI 268

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
           SY  +   TR S IA   IGYADG+  T  G    H           IKG    ++G I 
Sbjct: 269 SYNRRYITTRKSKIATIPIGYADGF--TRVGSSQRHV---------LIKGEFAKVVGSIC 317

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           MD  M D+TD   +++GD + I G     +I  D +A   GT NY+++     R  + +
Sbjct: 318 MDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQIGTINYEVVCSFSKRIPRVF 376


>gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057]
 gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057]
          Length = 834

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 165/376 (43%), Gaps = 35/376 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +S  + L   A+T  +VK +AYG G  +IA  L    V    V   +E
Sbjct: 476 LEVNLGAMIANLNSYRSRLKPEAKTVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 535

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYSKLMSCGVSH-P 123
           G +LR     A I ++   +P     K +FD  L P + S   L     +    G+++ P
Sbjct: 536 GSELRKAGITASIIIM---NPEMTAFKTMFDYKLEPEVYSFHLLEALIKEAEKEGITNFP 592

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSVQL 179
             ++VDTG +RLG + ++          +       + SH   +D P     +    V  
Sbjct: 593 IHVKVDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDAPQFDAFTRQQIVNF 652

Query: 180 ERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           E+    + +     I   + +S+GI   P   F + R GI LYG  + ++ S  M  V T
Sbjct: 653 EKASMELQNAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYG-VNPVDNSI-MNNVST 710

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               I+ IR     + V Y  +  L+R S IA   IGYADG    L              
Sbjct: 711 LRTTILQIRDVPGEDTVGYSRKGHLSRPSRIAAIPIGYADGLNRHL-------------- 756

Query: 298 GKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
           G G     + G   P +G I MD+ M D+TD +  + GD ++IFG  + +  ++    T 
Sbjct: 757 GNGHAYCLVNGQKAPYVGNICMDVCMIDVTD-IDCKEGDMVEIFGDHLPITVLSDILETI 815

Query: 354 NYDLLVRIGTRYAKFY 369
            Y++L  + TR  + Y
Sbjct: 816 PYEILTSVSTRVKRVY 831


>gi|153812757|ref|ZP_01965425.1| hypothetical protein RUMOBE_03164 [Ruminococcus obeum ATCC 29174]
 gi|149831117|gb|EDM86206.1| hypothetical protein RUMOBE_03164 [Ruminococcus obeum ATCC 29174]
          Length = 380

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 173/386 (44%), Gaps = 29/386 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M   E ++  + L A+ +N+  M   ++   R  AV+K + YG G E I+  + +   + 
Sbjct: 1   MKKFERVKAVVSLDAIAHNFEEMKKNIADGTRIVAVIKADGYGHGAEAISRLIEDYEYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            F   + EE ++L+    +  + +L  +     QE I  D  L      V ++     + 
Sbjct: 61  GFATATAEEAIQLKDAGIEKPVLILGLVFEEYFQELIRKDVRLTVCEYDVAKILSDEAVR 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                H + + +DTG +R+G + + E+++           ++  + +H A AD+      
Sbjct: 121 QGRQVHIH-IALDTGMSRIGFADKPESVEEIKKIAALPNVEIEGMFTHFARADETDKAPA 179

Query: 176 SVQLERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
             QL+R+ T        G++  L   ++S+GI+  P  +  L R GI++YG   +D++ +
Sbjct: 180 VEQLKRYLTFADLLEKAGVQIPLKHCSNSAGIIRMPEANLNLVRAGITIYGIYPSDEVER 239

Query: 229 S-HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++  +  ++ +  ++   AG  +SYGG      D  +A   +GYADGYP TLS   
Sbjct: 240 DIVKLKPAMELKSHVAYVKDLPAGTAISYGGTFASENDLRVATIPVGYADGYPRTLSN-- 297

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G   I G   PILG++ MD  M D+T    ++ GD + + G D    I +
Sbjct: 298 ---------KGWVLIHGQKAPILGRVCMDQFMVDVTHIPDVKHGDEVTLIGRDGDEFISI 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +     SG  +Y+    I  R  + Y
Sbjct: 349 ETFGDMSGRFSYEFACDISKRVPRVY 374


>gi|227544692|ref|ZP_03974741.1| alanine racemase [Lactobacillus reuteri CF48-3A]
 gi|300909066|ref|ZP_07126529.1| alanine racemase [Lactobacillus reuteri SD2112]
 gi|227185338|gb|EEI65409.1| alanine racemase [Lactobacillus reuteri CF48-3A]
 gi|300894473|gb|EFK87831.1| alanine racemase [Lactobacillus reuteri SD2112]
          Length = 375

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 164/379 (43%), Gaps = 36/379 (9%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL AL++N       L  N+R  AVVK NAYG G   +A     +G     V  ++E
Sbjct: 11  LIVDLDALRHNIQEQRKVLPENSRILAVVKANAYGNGLIPVAQTAMTSGASGLCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYA- 125
            ++L     +A   VL GI P ++ +I     + + + S+  L  Y +L    V+ P   
Sbjct: 71  ALELWDNGIEAMTLVL-GITPVEDALIAAQAGVSLTVGSLDWLEQYHQLAQ--VAKPKKP 127

Query: 126 ----LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L +D+G  R+G +            +    +   + +H A AD P  +  + Q++R
Sbjct: 128 LKVHLGIDSGMGRIGFTEVATFKQAVKLLDSPEFEFEGMFTHFATADSPDENYFNQQVQR 187

Query: 182 FRTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQT 234
           +   ++    +   +    S++G+           R GIS+YG    G D +  +  +Q 
Sbjct: 188 WHQFVASLDELPPYVHMANSATGLWHREKITANTVRMGISMYGQNPSGRD-LKLTLDLQP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V +  + I  +++  AG  VSYG      +D  +A   IGYADGYP  ++G         
Sbjct: 247 VSSLVSSISFVKQLKAGRSVSYGATYTAEQDEWLATLPIGYADGYPRCMTGY-------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
               K  + G    I G++ MD  M  +       VG  + + G     +I   D+A  +
Sbjct: 299 ----KVLVDGQFCDIAGRVCMDQMMIQLPKYYP--VGTPVVLMGKSGDQEITATDLAEQA 352

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 353 GTINYEILTNISNRVHRIY 371


>gi|161779854|gb|ABX79415.1| VanTc4 [Enterococcus casseliflavus]
          Length = 700

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 167/366 (45%), Gaps = 37/366 (10%)

Query: 15  ALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +   +    +  AVVK +AYG   + +A  L   GV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRVIPSTTKVMAVVKADAYGCDAQLVARTLERVGVDFFAVATIEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K   + N   +I ++        L   G+     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAK---ELNRYSLIQTIVSEAHGQALARTGLPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNS-VQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D  D +S + +  Q+  F  L++   
Sbjct: 467 RLGVA--PDLETVRRLYALPSLKITGIFSHLGSSDQLDTASILRTQAQIICFDDLLA--- 521

Query: 191 GIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTA 238
           G+ A         L SS GIL  P  H+   RPGI L G     N+       +Q ++T 
Sbjct: 522 GLSARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTL 581

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A ++  +   AGE + YG      R + I + +IGY DG P  LS    + S       
Sbjct: 582 KALLVDKKTVAAGEAIGYGLATVFDRPTTIGIVSIGYCDGVPRALSNQGFQLS------- 634

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
               +G ++P +G I MDM + D+TD   + V  ++++        + A  + T   +L+
Sbjct: 635 ---YQGVLLPQVGLICMDMLLIDLTDYPELAVESWLEVIS---DWTNTADQAQTIPNELI 688

Query: 359 VRIGTR 364
            R+G+R
Sbjct: 689 SRLGSR 694


>gi|332637957|ref|ZP_08416820.1| alanine racemase [Weissella cibaria KACC 11862]
          Length = 494

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 161/370 (43%), Gaps = 25/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I   AL +N   +  L+   R  AVVK NAYG G  +I  A   AGV  F V +++EG
Sbjct: 135 LEISAEALAHNVAYVRELTETNRFFAVVKANAYGHGLPQIVTAAKRAGVDGFAVATIDEG 194

Query: 69  VKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR +  +  I +L G+ P      +   +LIPV++S   L      ++   +   ++ 
Sbjct: 195 VWLRQFGVKLPILIL-GVTPATYVADLAKYDLIPVVASETWLDDALSQLNSEATLTVSVA 253

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS-HLACADDPSSHVNSVQLERFRTLI 186
           VDTG  R+G+  +  L+      N     +   I  H A AD   +     QL ++  L 
Sbjct: 254 VDTGMGRIGIRDRTELERVVAKLNAADNVVFQGIGMHFATADGNDTVYFEKQLAKWHELT 313

Query: 187 SHYK---GIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
                   I   LA+S   L          R G ++YG   +     +  +Q V++ +A 
Sbjct: 314 DELDLPADIWRHLANSGTSLWHEQPSTDAVRVGAAMYGFDASQGALPNRELQPVLSLKAE 373

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ +++  AG  +SYG     T    I    +GYADGYP  L G+D      V L     
Sbjct: 374 LVHVKQVPAGTSISYGATYTTTEPEWIGTVPVGYADGYPRALQGMD------VLLP---- 423

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDL 357
             G    ++G+I MD  M  + + +   VG  + + G     +I L D+A    T  Y++
Sbjct: 424 -DGRRAELVGRIAMDQFMIRLPEEMP--VGTVVTLIGQVGDEEITLVDLANKMDTIPYEI 480

Query: 358 LVRIGTRYAK 367
              +  R  +
Sbjct: 481 ATGLSPRLPR 490


>gi|326774015|ref|ZP_08233297.1| alanine racemase [Actinomyces viscosus C505]
 gi|326636154|gb|EGE37058.1| alanine racemase [Actinomyces viscosus C505]
          Length = 447

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 174/416 (41%), Gaps = 67/416 (16%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DL A+ +N   +  ++G    A VVK +AYG G   +A    +AG     V  + E
Sbjct: 33  RAVVDLAAVAHNGRRLAQVAGVPWMA-VVKADAYGHGLGPVALTALSAGASWLGVAQLAE 91

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV------------------------I 103
            + LR    +A +    G  P  +     T L+PV                        +
Sbjct: 92  ALTLRALLDEAGVSRPVG-EPTSQAPRLLTWLLPVMEPDRAAAEDSPLRAALAADLDLSV 150

Query: 104 SSVPQLTFYSKLMSCGVSHPYA-LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLI- 160
           S++PQL   S             L+VDTG +R G +++E           +  G + ++ 
Sbjct: 151 STLPQLEALSAAARAQGRAARLHLKVDTGMSRGGATVEELPALAAALRRAEDEGTVDVVG 210

Query: 161 -ISHLACADDPSSHVNSVQLERFR-----TLISHYKGIEASLASSSGILLGPNYHFQLTR 214
             SHL+ AD+P+S      LER+R      L +        LA++ G+L  P     L R
Sbjct: 211 LWSHLSRADEPASGSTEEHLERYRQAEQVVLAAGLNPPTHHLAATGGLLWHPQARMDLVR 270

Query: 215 PGISLYGGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAV 270
            GI +YG +   + +      ++  +  E+ ++ +++  AG+ VSYGG      D  + +
Sbjct: 271 AGIGMYGLSPDPSVATGAELGLRPAMRLESPLVQVKRIEAGQAVSYGGTWSAPTDRWVGL 330

Query: 271 AAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL---- 326
             +GY+DG P   S             G   +   M  ++G++ MD  + D+  ++    
Sbjct: 331 VPLGYSDGIPRAASS-----------AGPVGVGSLMTSVVGRVCMDQVVIDLGPAVDETG 379

Query: 327 -----SIEVGDYIQIFG-PDIK-------LDDVALASGTTNYDLLVRIGTRYAKFY 369
                +  VGD   ++G P +         D+ A A GT NY+++ R+G R  + Y
Sbjct: 380 APLPAAARVGDTAVLWGAPAVSDQEAVPTADEWAQACGTINYEIVTRLGARVPRCY 435


>gi|86144171|ref|ZP_01062508.1| alanine racemase [Leeuwenhoekiella blandensis MED217]
 gi|85829433|gb|EAQ47898.1| alanine racemase [Leeuwenhoekiella blandensis MED217]
          Length = 365

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 157/372 (42%), Gaps = 29/372 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL AL +N+  + + L  + +   VVK  AYG     +A  L   G+    V    E
Sbjct: 6   LELDLNALSHNYDYLRSKLEPDVKMLGVVKAYAYGSASVAVAKKLEEKGIDYLAVAYTAE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           GV LR    +  I VL   HP  E    I    L P I S   L  ++++       ++P
Sbjct: 66  GVALREAGIKTPILVL---HPQIENFDQIIKHQLEPSIYSFRVLKAFTEITEAQGLKAYP 122

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-LERF 182
             ++ +TG NRLG       D        +  ++  + SHLA ++DP+    ++Q +E F
Sbjct: 123 IHIKFNTGLNRLGFKDVNEKDILEQLHATEALKVKSLFSHLAASEDPNERTFTLQQIENF 182

Query: 183 RTLISHY---KGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
                H     G    L  +++S I+  P   F + R GI LYG  +   +   ++ V T
Sbjct: 183 ENNAKHMIAGLGYTPMLHQSNTSAIINYPQAQFDMVRSGIGLYGYGNTQEEDLKLKPVAT 242

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I  I     GE V Y       +    A   IG+ADG                +  
Sbjct: 243 LKTVISQIHDISIGETVGYNRAHTAAKLGRSATLPIGHADGI------------SRAYGK 290

Query: 298 GKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G+G+  I G   PI+G + MDM M D+T  +  E GD + IFG       ++    +  Y
Sbjct: 291 GRGYVMINGKKAPIIGNVCMDMIMVDVT-KIDCEEGDEVVIFGKGASAVALSARIKSIPY 349

Query: 356 DLLVRIGTRYAK 367
           +L+  +  R  +
Sbjct: 350 ELITAVSQRIER 361


>gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
 gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
          Length = 821

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 170/373 (45%), Gaps = 29/373 (7%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N+ +  + L    +   +VK   YG G  ++A  L         V   +E
Sbjct: 463 LEVNLDAVVHNFNYYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGV-SHP 123
           G +LR       + V+   +P      ++F+  L P + S   L     +    G+ S+P
Sbjct: 523 GEELRKEGISIPLIVM---NPEFSSFNVLFENQLEPEVYSFRLLDAMIKETERRGITSYP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERF 182
             +++DTG +RLG   ++  +       +       + SHL  +D          QL+ F
Sbjct: 580 IHIKIDTGMHRLGFQPEDVPEVCRRLKEQSGVVARSVFSHLVGSDSYIFDDFTKKQLDTF 639

Query: 183 RTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
             + +       YK I+  L +S+GI    +Y   + R GI LYG +    K   ++ + 
Sbjct: 640 TRVAAELEAGLEYKVIKHIL-NSAGIERFTDYQMDMVRLGIGLYGVSASGQKG--LRNIS 696

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I+   AG+ + Y     + RDS IA+  IGYAD       GLD   S     
Sbjct: 697 TLKTTILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYAD-------GLDRHFSNG--- 746

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           GG+  I G+  PI+G I MD  M D+TD+ + E GD + IFG ++ + +++    T  Y+
Sbjct: 747 GGEVVINGHRCPIIGNICMDACMIDVTDTDAHE-GDSVIIFGEELPVSELSDKLKTIPYE 805

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 806 ILTSISPRVKRVY 818


>gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
 gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
          Length = 826

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 173/380 (45%), Gaps = 42/380 (11%)

Query: 9   LKIDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+ +N  W+  + L    +   ++K +AYG G  +IA  L +  V    V   +
Sbjct: 467 LEVNLNAVVDNLNWYR-SFLKPETKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVAD 525

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKL-MSCGVS-H 122
           EGV LR     + I ++   +P     K +FD +L P + S   +    K     G++  
Sbjct: 526 EGVTLRKNGITSNIMIM---NPEMTSFKTLFDYDLEPEVYSFRLMDALVKAAQKEGITGF 582

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSSHVNSV 177
           P  +++DTG +RLG   Q+ +D       K+L + + II     SH   +D  + + +  
Sbjct: 583 PVHIKLDTGMHRLGFDPQKDMD----ELIKRLKKQNAIIPRSVFSHFVGSD--ADNFDEF 636

Query: 178 QLERFRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              +F       K ++A+ +        +SSGI   P     + R G+ LYG   + NK+
Sbjct: 637 SAHQFALFDEGSKKLQAAFSHKIIRHMDNSSGIEHFPERQMDMCRLGLGLYGINPRTNKT 696

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +  + T +  I+ +R   AG+ V Y  +  +  DS+IA   IGYADG    L    + 
Sbjct: 697 --INNISTLKTTILQLRNVPAGDTVGYSRKGTIDHDSVIAAIPIGYADGLNRHLG---NR 751

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
           H   +       + G     +G I MD+ M D+T  +  + GD ++IFG  + +  ++  
Sbjct: 752 HCYCL-------VNGQKAEYVGNICMDVAMIDVT-GIDCKEGDSVEIFGDHLPVTVLSDT 803

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T  Y++L  I  R  + Y
Sbjct: 804 LDTIPYEVLTTISNRVKRVY 823


>gi|312621900|ref|YP_004023513.1| alanine racemase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202367|gb|ADQ45694.1| alanine racemase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 390

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 175/381 (45%), Gaps = 38/381 (9%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL  L  N  ++   +       AVVK +AYG G  +I+  L   GV    V  ++E 
Sbjct: 13  EIDLDNLVYNLENIKKKILPQTHIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAIIDEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           ++LR +     I +L G  P +  E+++ +  +   + +  Q  + S+     G      
Sbjct: 73  LQLRHFNFDVPILIL-GFTPFELSEQVV-ENEISQTVYTYEQAYYLSQAAQKIGKKAKIH 130

Query: 126 LQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSVQLE 180
           ++VDTG  R+G L  +++++   N       +L  I SH + ADDP     +H   ++ E
Sbjct: 131 IKVDTGMGRIGFLCCEQSVNTILNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFMKFE 190

Query: 181 RFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
            F   ++       YK I    A+SS  +  P Y   + R G+ LYG      + +   +
Sbjct: 191 NFVKELNKNGVYFKYKHI----ANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHISI 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+  T  G    H  
Sbjct: 247 KPVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGF--TRVGSSQRHV- 303

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                    IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A 
Sbjct: 304 --------LIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAE 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+++     R  + Y
Sbjct: 356 QIGTINYEVVCSFSKRIPRVY 376


>gi|308178091|ref|YP_003917497.1| alanine racemase [Arthrobacter arilaitensis Re117]
 gi|307745554|emb|CBT76526.1| alanine racemase [Arthrobacter arilaitensis Re117]
          Length = 399

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 171/383 (44%), Gaps = 40/383 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL+A++NN   ++ +   A   AVVK +AYG G  ++A A    G +      V E
Sbjct: 26  RAVIDLSAIRNNVKQISDVVAPAAVMAVVKADAYGHGAIQVAKAALEGGARWIGCAHVTE 85

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR     A +           +   D  L   +S        +   +        ++
Sbjct: 86  ALALREAGIDAPMLAWLHTEDTPFEAAIDAGLDLGVSGWELERVAAAARAVQTPARIHIK 145

Query: 128 VDTGFNRLGLSLQ-------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           VDTG  R G +++        A DF      + +G    I SHLA AD+P       QL 
Sbjct: 146 VDTGLGRNGSTMEALPDLLNRASDFQEEGLLRAVG----IFSHLAVADEPERPETDEQLA 201

Query: 181 RFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGT---DKINKS 229
            F T I     IEA+        +A++ GIL  P+ H+++ R G+ LYG +   +   +S
Sbjct: 202 VFNTAIEL---IEAAGFDLEVRHIANTPGILSRPDSHYEMVRLGLGLYGLSPFEEDTPQS 258

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  +T + R+  ++K   G+ VSYG   K   ++ + +  +GYADG P   +G    
Sbjct: 259 FGLRPAMTVKTRVANVKKVRPGQGVSYGLNYKTEGETYLGLIPMGYADGLPRIATG---- 314

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE--VGDYIQIFGPDIK-LDDV 346
            +P         + G   P+ G+I MD  + D+   ++ E  +G    IFG   + ++  
Sbjct: 315 -APVT-------VNGRTYPVRGRIAMDQCVIDLGADINPEDFLGAEAIIFGDGGQSVNTW 366

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A+ T NY+++ RI  R  ++Y
Sbjct: 367 AYAANTINYEVVTRISPRVPRYY 389


>gi|295402565|ref|ZP_06812514.1| alanine racemase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975413|gb|EFG51042.1| alanine racemase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 381

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 162/378 (42%), Gaps = 38/378 (10%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+  N   + N L  + R  AVVK NAYG G  ++A     AG     V  ++E 
Sbjct: 9   EIDLDAIYYNVSQLKNFLPNDVRIMAVVKANAYGHGDVQVAKTALEAGASYLAVAFLDEA 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR     A I VL    P    I     +   +     +   +   S      + L++
Sbjct: 69  LALRKGGIDAPILVLGASRPSDINIAAKHRITLTVFQAEWIEQAADFYSETAPVLFHLKM 128

Query: 129 DTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           DTG  RLG+        L E +D  H  F+     L  + +H A AD+ ++   S Q + 
Sbjct: 129 DTGMGRLGVKEETETKRLIEQID-RHPYFS-----LEGVYTHFATADEINTGYFSFQYDN 182

Query: 182 FRTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP--MQTV 235
           F  ++    YK       +S+  L  P+  F + R GIS+YG   + +I +  P  ++  
Sbjct: 183 FLRMLEWLPYKPPLIHCGNSATTLRFPDKVFNMVRFGISMYGLSPSPEIKQYLPYTLKEA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VSYG       +  +    IGYADG+   L  L + H     
Sbjct: 243 FSLHSRLVHVKKLKPGEKVSYGATYTAETEQWVGTVPIGYADGW---LRKLQNFHV---- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  +   L   VG  + + G      I +DDVA    
Sbjct: 296 -----LVNGEKAPIIGRICMDQLMVRLPKQLP--VGTKVTLIGRQGDKYISVDDVAQYLD 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 349 TINYEIPCTISYRVPRIF 366


>gi|251812207|ref|ZP_04826680.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876517|ref|ZP_06285383.1| alanine racemase [Staphylococcus epidermidis SK135]
 gi|251804304|gb|EES56961.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294769|gb|EFA87297.1| alanine racemase [Staphylococcus epidermidis SK135]
          Length = 382

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 177/388 (45%), Gaps = 42/388 (10%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 2   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMS 117
           F V +++E ++LR++   A++ VL G+ P +  EK I     + V S         ++  
Sbjct: 62  FAVATLDEAIELRMHGVDAKLLVL-GVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPD 120

Query: 118 CGVSHPY-ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDP 170
               + +  +++DTG  R+G+      +E +D  +     K   L    + +H A AD+P
Sbjct: 121 DNQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLIN-----KRDHLVFEGVFTHFASADEP 175

Query: 171 SSHVNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
            + +N  Q   F+ +++   K I     +S+G LL         R GISLYG   ++ + 
Sbjct: 176 GNSMNE-QYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVK 234

Query: 228 KSHPMQTVVTAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            +  +    +A+  +  + ++   AGE VSYG       +  IA+  IGYADGY  ++ G
Sbjct: 235 DNVKVHLRPSAQLVSETVQVKTLKAGETVSYGRTYIADEEMTIAILPIGYADGYLRSMQG 294

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI---- 341
                    F+     + G    ++G+I MD  +  +     ++ G+ + +    +    
Sbjct: 295 --------AFVN----VNGSQCEVIGRICMDQLIVKVPS--HVKTGEKVILMDNHVDSPQ 340

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
             + VA   GT NY++L  +  R  + Y
Sbjct: 341 SAEAVANKQGTINYEVLCNLSRRLPRIY 368


>gi|111023143|ref|YP_706115.1| alanine racemase [Rhodococcus jostii RHA1]
 gi|110822673|gb|ABG97957.1| alanine racemase [Rhodococcus jostii RHA1]
          Length = 400

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 158/348 (45%), Gaps = 40/348 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N   +   + +A   AVVK + Y  G   +A A   AG  +  VT+V E + 
Sbjct: 32  VDLDAIAHNVRILRDSARDAAMMAVVKADGYNHGAVPVARAALAAGASELGVTTVSEALT 91

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK---------LMSCGVS 121
           LR     A   VL  +H        D +  P I++  +L   S            S G +
Sbjct: 92  LRRAGIDAP--VLAWLH------TVDADFAPAIAAGVELGVSSPRHLAAVVAAARSVGTT 143

Query: 122 HPYALQVDTGFNRLGLSLQEA----LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
               ++VDTG NR G++  E     +D         + +L  I SHLA AD+P       
Sbjct: 144 AIVTIKVDTGLNRNGVAPDELAQVLVDLARAQAEGSV-RLRGIFSHLAHADEPHHAWIDS 202

Query: 178 QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-P 231
           Q +R  + I+  K  G+      L++S+  L  P+  F + RPGI++YG +         
Sbjct: 203 QRDRLISAIADAKRQGLVPEVVHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPELGQFG 262

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T  +R+ L++K  AGE VSYG Q    RD+ +A+   GYADG P +LSG      
Sbjct: 263 LRPAMTLRSRVALVKKVAAGEGVSYGHQWVAPRDTTVALLPFGYADGLPRSLSG-----R 317

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFG 338
             V LG +        P +G++ MD  + D+  D   +  GD    FG
Sbjct: 318 FEVQLGAQ------RRPGIGRVCMDQVVVDLGPDGGGVREGDTAVFFG 359


>gi|312112523|ref|YP_003990839.1| alanine racemase [Geobacillus sp. Y4.1MC1]
 gi|311217624|gb|ADP76228.1| alanine racemase [Geobacillus sp. Y4.1MC1]
          Length = 381

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 162/378 (42%), Gaps = 38/378 (10%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+  N   + N L  + R  AVVK NAYG G  ++A     AG     V  ++E 
Sbjct: 9   EIDLDAIYYNVSQLKNFLPNDVRIMAVVKANAYGHGDVQVAKTALEAGASYLAVAFLDEA 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR     A I VL    P    I     +   +     +   +   S      + L++
Sbjct: 69  LALRKGGIDAPILVLGASRPSDINIAAKHRITLTVFQAEWIEQAADFYSETAPVLFHLKM 128

Query: 129 DTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           DTG  RLG+        L E +D  H  F+     L  + +H A AD+ ++   S Q + 
Sbjct: 129 DTGMGRLGVKEETETKRLIEQID-RHPYFS-----LEGVYTHFATADEINTGYFSFQYDN 182

Query: 182 FRTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP--MQTV 235
           F  ++    YK       +S+  L  P+  F + R GIS+YG   + +I +  P  ++  
Sbjct: 183 FLRMLEWLPYKPPLIHCGNSATTLRFPDKVFNMARFGISMYGLSPSPEIKQYLPYTLKEA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VSYG       +  +    IGYADG+   L  L + H     
Sbjct: 243 FSLHSRLVHVKKLKPGEKVSYGATYTAETEQWVGTVPIGYADGW---LRKLQNFHV---- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  +   L   VG  + + G      I +DDVA    
Sbjct: 296 -----LVNGEKAPIIGRICMDQLMVRLPKQLP--VGTKVTLIGRQGDKYISVDDVAQYLD 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 349 TINYEIPCTISYRVPRIF 366


>gi|325267108|ref|ZP_08133777.1| alanine racemase [Kingella denitrificans ATCC 33394]
 gi|324981461|gb|EGC17104.1| alanine racemase [Kingella denitrificans ATCC 33394]
          Length = 356

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 170/369 (46%), Gaps = 45/369 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I L  L++N+  +  + G     AVVK +AYG G  + A AL +     F V  +EE V
Sbjct: 7   EIRLAHLRHNYRVLKEMHGQ-NLLAVVKADAYGHGAVQCAKALDDMA-DGFAVAFLEEAV 64

Query: 70  KLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR    ++ I +L G+  P +  ++    L  VI    QL      ++     P    L
Sbjct: 65  TLRENGIKSPILLLEGVFEPHEYALVEQYGLWTVIHQQTQL---EDCLAHDWKQPATVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHN--------SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           ++D+G +R G        F HN          + K+G++ + ++H ACADD    +  +Q
Sbjct: 122 KMDSGMHRAGF-------FPHNYAAAYHALQQSPKIGKI-VKMTHFACADDAERGMTEMQ 173

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------GTDKINKSHPM 232
           ++ F T      G ++SLA+S+ IL  P    +  R G++LYG      G         +
Sbjct: 174 IDTFDTACEGLGG-DSSLANSAAILAYPEARREWGRAGLALYGVSPFAAGAGCFEAD--L 230

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+   +++   R     E + YG      R + + + A GYADGYP         ++P
Sbjct: 231 KPVMRVASQVFAERVLQPHEPIGYGASFYTKRSTRVGLVACGYADGYP--------RNAP 282

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
           +       FI G    ++G+ +MDM   D++  +  +    +++FG  + ++++A ++G 
Sbjct: 283 T---DTPVFINGMRSRLIGRASMDMLTVDLS-HVPADSAYEVELFGDSVSINELAQSAGH 338

Query: 353 TNYDLLVRI 361
             Y++L  I
Sbjct: 339 IPYEILCHI 347


>gi|311031137|ref|ZP_07709227.1| alanine racemase [Bacillus sp. m3-13]
          Length = 389

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 160/384 (41%), Gaps = 46/384 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL  +  N  ++   ++ +    AVVK NAYG G  ++A     AG +   V+ ++E
Sbjct: 10  VEVDLDCIYENVQAIQEHVTKDVTVIAVVKANAYGHGDVQVANVALEAGAKYLAVSFLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIH------PGQEKI---IFDTNLIPVISSVPQLTFYSKLMSC 118
            + LR     A I VL            +E I   +F    +   +S  Q T   KL   
Sbjct: 70  AMSLRQQGITAPILVLGASRVSDLPLAAKEDITLTVFQKEWVEEATSAYQGTEVVKLH-- 127

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSV 177
                  L++DTG  R+G   QE +       +K    Q+  I +H A AD+  S     
Sbjct: 128 -------LKLDTGMGRIGARTQEEVAQILELIDKAPNLQIEGIYTHFATADELQSSYVEQ 180

Query: 178 QLERFRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---- 229
           Q ERF +L++     Y        +S+  L  P   F   R GI++YG T  +       
Sbjct: 181 QFERFHSLLNQVTNQYSIPMIHCGNSATTLRFPTRIFNAVRVGIAMYGLTPSLEMEPELP 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            P++   +   +++ ++K   GE VSYG       +  I    +GYADG+   L G++  
Sbjct: 241 FPLKEAFSLHTKLVHVKKLSIGESVSYGATYTTKEEEWIGTVPVGYADGWIRKLQGMNI- 299

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       + G   PI+G+I MD  M  +   L I  G  + + G      I  +D
Sbjct: 300 -----------LVDGKFAPIVGRICMDQFMVKLPHELPI--GTKVTLIGKQDGKKISSND 346

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA    T NY++   I  R  + +
Sbjct: 347 VAAKLDTINYEVPCMISYRVPRMF 370


>gi|225156581|ref|ZP_03724914.1| Alanine racemase [Opitutaceae bacterium TAV2]
 gi|224802813|gb|EEG21062.1| Alanine racemase [Opitutaceae bacterium TAV2]
          Length = 375

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 169/380 (44%), Gaps = 36/380 (9%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL AL+ N   + A L  + R  AVVK +AYG G  + A  L +AG   F V S+ E 
Sbjct: 6   EIDLAALERNLRLIRASLPAHIRYVAVVKADAYGHGLPQTAARLMHAGADLFAVASIAEA 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
             LR   P   +  L  + P +++ I D N+   +S+  ++  +S             L+
Sbjct: 66  AALREIGPDWPVLSLGPVLPEEDRHIADYNVAVTVSTTDEVARFSAAARAAGRPIAVHLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG  RLG+  ++A     N  +    +L  + +H +  D+ ++   + Q  RF   I 
Sbjct: 126 IDTGMGRLGVWHEQAETIYQNLRDAPGLRLEGVFTHFSSPDEDAA-FTAEQRRRFVAAIG 184

Query: 188 HYKGIEAS-----LASSSGI----LLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTV 235
             +G++ +       +S+G+      GP   F   R G+  +G       +      + V
Sbjct: 185 RCRGLDPAKIFVHADNSAGLETIETAGP---FNAARIGLLQFGVLPHAGSLLAQVRTEPV 241

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +   RI L++   AG  +SYG    L+RDS +A+   GY DG P   S           
Sbjct: 242 FSFRTRIGLVKPLPAGTDISYGRTHTLSRDSRVAILTGGYGDGIPRHASNRACV------ 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF------GPDIKLDDVALA 349
                 ++G   P+LG++TMD T+ D+TD L  + G   ++       G +I L + +  
Sbjct: 296 -----LVRGRRCPVLGRVTMDQTIIDVTD-LPADTGPGEEVVLVGRQNGAEIALTEFSRW 349

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T  ++ L  +  R A+ Y
Sbjct: 350 GDTIPWETLCSVTKRVARIY 369


>gi|332882707|ref|ZP_08450318.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679209|gb|EGJ52195.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 369

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 168/380 (44%), Gaps = 40/380 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVE 66
           L+IDLTAL+ N   + + L       AVVK ++YG    +IA  +    + ++F V    
Sbjct: 8   LEIDLTALERNIQYLKSRLKPTTWFLAVVKASSYGNEATQIAAYIEKKKLANYFAVAYTS 67

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT----NLIPVISSVPQLTFYSKLMSCG--V 120
           EG+ LR       I VL   HP  + I FD      L P + S+     + +        
Sbjct: 68  EGIALRKRGISLPIIVL---HP--QSINFDDIIKYQLEPTLYSLRTAHLFLEYAEKHQLS 122

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179
            +P  L+ +TG NRLG    +  +      N    ++    SHLA ++D +  V    Q+
Sbjct: 123 DYPVHLKCNTGLNRLGFDFNQIDEVLSLLKNNATVKVKTAYSHLAASEDMNEKVFTENQI 182

Query: 180 ERFRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           +RF   I+  + +  + A        ++SGIL  P   F + R GI +YG  +       
Sbjct: 183 QRF---IAFQEKVNQTFAHKVIYHQCNTSGILNYPEAQFDMVRSGIGMYGFANDAALQPY 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  +++ ++ I  I +   G+ + Y         +  A   +G+ADG             
Sbjct: 240 LTPIMSLKSVISQIHRLEIGDSLGYNRGYIADHITKTATIPVGHADGIN----------- 288

Query: 292 PSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
             ++  GKGF  I G   PILG + MDM M DIT  +  E GD + +F  D   + +A +
Sbjct: 289 -RIYGKGKGFVFIHGKKAPILGNVCMDMIMVDIT-HIDCEEGDEVIVFDKDHTAETLAES 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +GT +Y+L+  +  R  + Y
Sbjct: 347 AGTISYELMTSMAHRIKRLY 366


>gi|157273511|gb|ABV27410.1| alanine racemase [Candidatus Chloracidobacterium thermophilum]
          Length = 398

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 168/379 (44%), Gaps = 33/379 (8%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEG 68
           +IDL  L+ N+  +   +G     A+VK NAYG G   +A  L +    D+F V + EEG
Sbjct: 12  EIDLARLRQNYQWLRQQAG-VPVMAMVKANAYGHGLLPVATFLQDVAKADWFGVATPEEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPYA 125
           + LR       I VL G   GQE  I   +L   +P  + +P L   +     G S    
Sbjct: 71  IALRRAGITRPILVLGGFWFGQEADIVYYDLATTLPDPAYIPALEQAAS--RAGRSVAIH 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           L++DTG  RLGLS  +         +    +L  +++H A AD P  +     Q+ R   
Sbjct: 129 LEIDTGIGRLGLSPDQLTAVLERLKSCSHLRLDGLMTHFASADLPEYADFTRDQIRRHAL 188

Query: 185 LISHYK--GIEAS---LASSSGI-LLGPNYHFQLTRPGISLYG-GTDKINKSHPMQT--- 234
            +   +  G E     LA+S+G+    P     L R G  LYG   D ++   P      
Sbjct: 189 ALQQVRAAGWEPRYVHLANSAGLHAFLPEAAGNLVRLGGLLYGIAGDALSPVFPPPPTQP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  ARI+ ++   AG  + YG      R + +A   +GY DG    L  + S      
Sbjct: 249 VLSLHARILGLKTVPAGTPLGYGCTFVTCRPTRVATVPLGYGDG----LHRIQSNR---- 300

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G+  ++G  VPI+G+++MD TM D+TD  ++ +GD     G      I  ++ A   
Sbjct: 301 ---GQAIVRGRKVPIVGRVSMDTTMLDVTDVPNVTLGDVATFIGRQGETTITAEEYAAVM 357

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           G+   +    +  R  ++Y
Sbjct: 358 GSIALEATTALTARLPRWY 376


>gi|319745645|gb|EFV97945.1| alanine racemase [Streptococcus agalactiae ATCC 13813]
          Length = 366

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 176/380 (46%), Gaps = 41/380 (10%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  IDL A+ NN  S+   +  + +T AVVK NAYG G  +++  + +  V  F V++++
Sbjct: 10  RALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKYIESV-VDGFCVSNLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I VL  + P Q  +  + N+   ++S+  L                +
Sbjct: 69  EAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAVDLSGLEVHI 128

Query: 127 QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQ----LSLIISHLACADDPSSHVNSVQLER 181
           +VD+G  R+G+  L E      N    +LG+    +  + +H A AD+  +   + QL  
Sbjct: 129 KVDSGMGRIGVRQLDEG-----NKLISELGESGASVKGVFTHFATADEADNCNFNQQLTF 183

Query: 182 FRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQ 233
           F+  IS        + AS +++S  L      F   R G+ +YG    GTD ++  +P++
Sbjct: 184 FKDFISGLDNCPDLVHASNSATS--LWHSETIFNAVRLGVVMYGLNPSGTD-LDLPYPIK 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ ++ +++   G  V YG   ++T D  +    IGYADG+   + G       S
Sbjct: 241 PALSLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGF------S 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
           V + G+      +  I+G+++MD     +    +I  G  + + G     +I   DVA  
Sbjct: 295 VIVNGE------LCEIIGRVSMDQMTIRLPQKYTI--GTKVTLIGQQGSCNITTTDVAQK 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++L  +  R  ++Y
Sbjct: 347 RQTINYEVLCLLSDRIPRYY 366


>gi|302519607|ref|ZP_07271949.1| alanine racemase [Streptomyces sp. SPB78]
 gi|302428502|gb|EFL00318.1| alanine racemase [Streptomyces sp. SPB78]
          Length = 378

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 159/382 (41%), Gaps = 35/382 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   +   +  A   AVVK +AYG G    A A   AG     V +  E
Sbjct: 9   RAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPAE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR    + R+        G  +   + ++   +S    L    +   + G +    L
Sbjct: 69  ALALRAAGAEGRMLCWLWTPGGPWRAAIEADIDVSVSGQWALDEVAAAARAVGATARVHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +      N+   +   L  ++   SH ACAD+P     + QL  F 
Sbjct: 129 KADTGLGRNGCQPADWPALVGNALALQAEGLVRVVGLWSHFACADEPGHPSIAAQLTLFE 188

Query: 184 TL--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHP 231
            +  ++   G+ A    LA+S   L  P  H+ L RPGI++YG       GT       P
Sbjct: 189 EMTGLAARLGVRAEVRHLANSPATLSLPESHYDLVRPGIAMYGLSPSPAMGTHTDFGLRP 248

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  +V   A + L+++   G  VSYG       D+ + +  +GY DG P   SG      
Sbjct: 249 VMRLV---APLALVKRVPGGHGVSYGHLYVTPGDTTLGLVPLGYGDGIPRHASG------ 299

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   + G    + G+I MD  + D+    +   G    +FGP    +   +D A
Sbjct: 300 -----SGPVLVNGKWHTVAGRIAMDQFVVDLGGD-TPAAGSEAVLFGPGDRGEPSAEDWA 353

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
            A+ +  Y+++ RIG R  + +
Sbjct: 354 RAADSIVYEIVTRIGARVPRVH 375


>gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
 gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
          Length = 821

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 156/377 (41%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL  N  +  N L    +   +VK +AYG G  ++A  L +  V    V   +E
Sbjct: 463 LEINLNALTANLNYYRNKLKPETKMVCMVKASAYGAGSFEVAKTLEDQRVDYLAVAVADE 522

Query: 68  GVKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL--MSCGVSH 122
           G  LR   ++ P     ++        K +FD  L P + S   L    K        + 
Sbjct: 523 GADLRKAGIHCP----IIIMDPEVSAFKTMFDYKLEPEVYSFQMLEELIKAAEREGAANV 578

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181
           P  ++VDTG +RLG +  +          +       I SHL  +D D        Q+E 
Sbjct: 579 PVHIKVDTGMHRLGFAPSDMPRLAERLHRQSTVIPRSIFSHLVGSDSDRFDPFTRRQIET 638

Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F    +  +      I   + +++GI   P   F + R G+ LYG     N+   +  V 
Sbjct: 639 FEAAAADLQKEFNHKIIRHICNTAGIERYPGAQFDMVRLGLGLYGIDPYTNRI--LHNVT 696

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I    A E V Y  +  L+RDS IA   IGYADG    L             
Sbjct: 697 TLKTTILQIHDVPADETVGYSRKGVLSRDSRIATLPIGYADGLNRRL------------- 743

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G G     + G   P +G I MD+ M D+TD +  + GD   IFG D+ +  ++    T
Sbjct: 744 -GNGHAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCKEGDKAIIFGDDLPVTVLSDVLET 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +  R  + Y
Sbjct: 802 IPYEILTSVSGRVKRIY 818


>gi|77409010|ref|ZP_00785730.1| alanine racemase [Streptococcus agalactiae COH1]
 gi|77172394|gb|EAO75543.1| alanine racemase [Streptococcus agalactiae COH1]
          Length = 366

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 175/380 (46%), Gaps = 41/380 (10%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  IDL A+ NN  S+   +  + +T AVVK NAYG G  +++  + +  V  F V++++
Sbjct: 10  RALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKYIESI-VDGFCVSNLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I VL  + P Q  +  + N+   ++S+  L                +
Sbjct: 69  EAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVTSLEWLRLCQTSAVDLSGLEVHI 128

Query: 127 QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQ----LSLIISHLACADDPSSHVNSVQLER 181
           +VD+G  R+G+  L E      N    +LG+    +  I +H A AD+  +   + QL  
Sbjct: 129 KVDSGMGRIGVRQLDEG-----NKLISELGESGASVKGIFTHFATADEADNCKFNQQLTF 183

Query: 182 FRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQ 233
           F+  IS        + AS +++S  L      F   R G+ +YG    GTD ++  +P+ 
Sbjct: 184 FKDFISGLDNCPDLVHASNSATS--LWHSETIFNAVRLGVVMYGLNPSGTD-LDLPYPIN 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ ++ +++   G  V YG   ++T D  +    IGYADG+   + G       S
Sbjct: 241 PALSLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGF------S 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
           V + G+      +  I+G+++MD     +    +I  G  + + G     +I   DVA  
Sbjct: 295 VIVNGE------LCEIIGRVSMDQMTIRLPQKYTI--GTKVTLIGQQGSCNITTTDVAQK 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++L  +  R  ++Y
Sbjct: 347 RQTINYEVLCLLSDRIPRYY 366


>gi|222153645|ref|YP_002562822.1| alanine racemase [Streptococcus uberis 0140J]
 gi|254802390|sp|B9DVI3|ALR_STRU0 RecName: Full=Alanine racemase
 gi|222114458|emb|CAR43287.1| alanine racemase [Streptococcus uberis 0140J]
          Length = 368

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 170/371 (45%), Gaps = 29/371 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL A+++N  ++   +S   +T AVVK NAYG G  ++A A+ +  V  F V++++E +
Sbjct: 13  VDLQAIRDNIKAVQEHISSTTKTFAVVKANAYGHGAIQVAKAV-DEEVDAFCVSNLDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR    +  I +L  I   +  +  + ++   ++S   L                ++VD
Sbjct: 72  ELRQAGIEKDILILGVILANEIPLAIEHSITITVASNEWLESAKACQKDLAQLHVHVKVD 131

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G+ SL+EA         K    +  I +H A AD+ ++     QL  F  L++ 
Sbjct: 132 SGMGRIGVRSLEEANQLI-AGLTKSGAHVDGIFTHFATADEENTDKFHQQLAFFTDLVNA 190

Query: 189 YKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARI 242
              I+  L   ++S+  L   +  F   R GI +YG       +N  +P++  ++  +R+
Sbjct: 191 L-AIKPELVHASNSATSLWHSDTIFNAVRLGIVIYGLNPSGKTLNLPYPLKPALSLSSRL 249

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + I+K  AG  V YG       +  +    IGYADG+   + G                I
Sbjct: 250 VHIKKIKAGNTVGYGATYTAKTEEYVGTLPIGYADGWTRDMQGYSV------------II 297

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358
            G++  I+G+++MD     +  +   ++G  + + G +    I   D+A   GT NY++L
Sbjct: 298 DGHLCEIIGRVSMDQLTVRLPKAF--DIGQEVTLIGQEGHQMISATDIAEKRGTINYEVL 355

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 356 CLLSDRIPRHY 366


>gi|22537824|ref|NP_688675.1| alanine racemase [Streptococcus agalactiae 2603V/R]
 gi|25011768|ref|NP_736163.1| alanine racemase [Streptococcus agalactiae NEM316]
 gi|76788152|ref|YP_330298.1| alanine racemase [Streptococcus agalactiae A909]
 gi|77412407|ref|ZP_00788715.1| alanine racemase [Streptococcus agalactiae CJB111]
 gi|77414530|ref|ZP_00790676.1| alanine racemase [Streptococcus agalactiae 515]
 gi|81845386|sp|Q8DY10|ALR_STRA5 RecName: Full=Alanine racemase
 gi|81845564|sp|Q8E3M9|ALR_STRA3 RecName: Full=Alanine racemase
 gi|123601347|sp|Q3JZK5|ALR_STRA1 RecName: Full=Alanine racemase
 gi|22534718|gb|AAN00548.1|AE014268_8 alanine racemase [Streptococcus agalactiae 2603V/R]
 gi|24413308|emb|CAD47387.1| unknown [Streptococcus agalactiae NEM316]
 gi|76563209|gb|ABA45793.1| alanine racemase [Streptococcus agalactiae A909]
 gi|77159428|gb|EAO70593.1| alanine racemase [Streptococcus agalactiae 515]
 gi|77161542|gb|EAO72545.1| alanine racemase [Streptococcus agalactiae CJB111]
          Length = 366

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 175/380 (46%), Gaps = 41/380 (10%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  IDL A+ NN  S+   +  + +T AVVK NAYG G  +++  + +  V  F V++++
Sbjct: 10  RALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKYIESI-VDGFCVSNLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I VL  + P Q  +  + N+   ++S+  L                +
Sbjct: 69  EAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAVDLSGLEVHI 128

Query: 127 QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQ----LSLIISHLACADDPSSHVNSVQLER 181
           +VD+G  R+G+  L E      N    +LG+    +  I +H A AD+  +   + QL  
Sbjct: 129 KVDSGMGRIGVRQLDEG-----NKLISELGESGASVKGIFTHFATADEADNCKFNQQLTF 183

Query: 182 FRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQ 233
           F+  IS        + AS +++S  L      F   R G+ +YG    GTD ++  +P+ 
Sbjct: 184 FKDFISGLDNCPDLVHASNSATS--LWHSETIFNAVRLGVVMYGLNPSGTD-LDLPYPIN 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ ++ +++   G  V YG   ++T D  +    IGYADG+   + G       S
Sbjct: 241 PALSLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGF------S 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
           V + G+      +  I+G+++MD     +    +I  G  + + G     +I   DVA  
Sbjct: 295 VIVNGE------LCEIIGRVSMDQMTIRLPQKYTI--GTKVTLIGQQGSCNITTTDVAQK 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++L  +  R  ++Y
Sbjct: 347 RQTINYEVLCLLSDRIPRYY 366


>gi|163789953|ref|ZP_02184389.1| D-alanine racemase [Carnobacterium sp. AT7]
 gi|159874893|gb|EDP68961.1| D-alanine racemase [Carnobacterium sp. AT7]
          Length = 390

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 167/385 (43%), Gaps = 44/385 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I L  L +N  +    LS      AVVK + YG G  + A A   AG     V  ++E
Sbjct: 11  VEIALDHLTDNIKAFKGILSPETALMAVVKADGYGHGAIETAKAAIEAGATYLAVAFLDE 70

Query: 68  GVKLRLYTPQARIFVL-----------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + LR       I VL             I  G    I+       + S+ +L    K +
Sbjct: 71  AISLRKAGFSTPILVLGYTSLDTETIEMAIDYGITLTIYSKE---AVESIQKLAIQKKKV 127

Query: 117 SCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            C +     L++D+G NR+G+ + +EAL       +  L     I +H + AD   S   
Sbjct: 128 -CRIH----LKIDSGMNRIGVRTAEEALQIIAAITSDYL-VFEGIFTHFSDADAIESTFV 181

Query: 176 SVQLERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
             Q   F  ++S    KG    +    +++  +  P  H  + R GI +YG    + +  
Sbjct: 182 HDQFNHFMKIVSSIQKKGYTIPIKHCCNTAATIAFPKMHLDMVRIGIGIYGLYPEEHLRT 241

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V+T + + ILI++   G+ +SYG     T+DS++A   +GYADG   TLS    
Sbjct: 242 KISLKPVMTFKTKPILIKEVPVGQTISYGRTYTTTKDSIVATIPVGYADGLSRTLSN--- 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   + G+  PI+G++ MD TM D+T+   +   +   +FG      I + 
Sbjct: 299 --------KGHITVNGHKAPIVGRVCMDQTMVDLTEIDPVYFNEEFVLFGDPLDGAISIG 350

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +VA   GT +Y++   IG R  + Y
Sbjct: 351 EVADQMGTIHYEVACLIGKRVPRIY 375


>gi|295838450|ref|ZP_06825383.1| alanine racemase [Streptomyces sp. SPB74]
 gi|197695751|gb|EDY42684.1| alanine racemase [Streptomyces sp. SPB74]
          Length = 378

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 158/383 (41%), Gaps = 37/383 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   +   +  A   AVVK +AYG G    A A   AG     V +  E
Sbjct: 9   RAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPAE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126
            + LR    + R+        G  +   + ++   +S    L   +      G +    L
Sbjct: 69  ALALRAEGVEGRMLCWLWTPGGPWRAAIEADIDVSVSGQWALDEVAVAAREAGRTARVHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +      N+   +     Q+  + SH ACAD+P     + QL  F 
Sbjct: 129 KADTGLGRNGCQPADWSALLGNALALQAEGAVQVVGLWSHFACADEPGHPSIAAQLALFE 188

Query: 184 --TLISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---- 234
             T ++   G+ A    +A+S   L  P  H+ L RPGI++YG    ++ S  M T    
Sbjct: 189 EMTALAARLGVRAEARHIANSPATLGLPESHYDLVRPGIAMYG----LSPSPAMGTHGDF 244

Query: 235 ----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
               V+   A + L+++   G  VSYG       ++ + +  +GY DG P   SG     
Sbjct: 245 GLRPVMRLLAPLALVKQVPGGHGVSYGHHYVTPGETTLGLVPLGYGDGIPRHASGT---- 300

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                  G   + G    + G+I MD  + D+        G    +FGP    +   +D 
Sbjct: 301 -------GPVLVNGKWHTVAGRIAMDQFVVDLGGDTPAP-GSEAVLFGPGDRGEPSAEDW 352

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A+ T  Y+++ RIG R  + +
Sbjct: 353 ARAADTIVYEIVTRIGARVPRVH 375


>gi|315501356|ref|YP_004080243.1| alanine racemase [Micromonospora sp. L5]
 gi|315407975|gb|ADU06092.1| alanine racemase [Micromonospora sp. L5]
          Length = 372

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 173/382 (45%), Gaps = 41/382 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A++ N   + A + +A   AVVK + YG G    A A  +AG     V +++E 
Sbjct: 6   VRVDLDAIRENVTRLKAGT-SAELMAVVKGDGYGHGMVPAARAALDAGADQLGVCTLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYAL 126
           ++LR     A +   + + PG    + D   + V      LT   +++        P  L
Sbjct: 65  LRLREEGITAPVLA-WLLSPGLP--LHDGITVGVDLGCAGLTQLDEMIQASRRADRPARL 121

Query: 127 --QVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             ++DTG  R G ++ +    L+    +    L ++  + SH   AD P       QL  
Sbjct: 122 HLKIDTGLARGGATVADWPALLEAAAKAQADGLVEVVGVWSHFVYADSPGHPTTDRQLAV 181

Query: 182 FRT---------LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           F+          L   Y+     LA+S+  L  P+ HF L RPGI++YG +    +   +
Sbjct: 182 FQEGLEMVTRAGLRPRYR----HLANSAATLTRPDTHFDLVRPGIAVYGLSPVAGEQFGL 237

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +TA AR++L ++  AG  VSYG      +++ +AV  +GYADG P   S     ++ 
Sbjct: 238 RPAMTARARVMLTKRVAAGTGVSYGHTYLTEQEANLAVVPLGYADGVPRHAS-----NTG 292

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
            V L GK         I G++ MD  + D  D   +  GD   +FG     +   DD A 
Sbjct: 293 PVQLAGKRRT------ISGRVCMDQFVVDCGDD-EVADGDVATLFGSGADGEPTADDWAE 345

Query: 349 ASGTTNYDLLVRI-GTRYAKFY 369
           A GT NY+++ R  G R  + Y
Sbjct: 346 AVGTINYEIVTRFGGVRVPRVY 367


>gi|227485012|ref|ZP_03915328.1| possible alanine racemase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237009|gb|EEI87024.1| possible alanine racemase [Anaerococcus lactolyticus ATCC 51172]
          Length = 372

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 166/371 (44%), Gaps = 33/371 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L++++  ++NN   +  L+  ++  AVVK NAYGLG + +   + +  V  F V  + EG
Sbjct: 6   LEVNIDKIRNNIIKIKNLNHRSKFCAVVKANAYGLGSDIVGREIEDL-VDYFAVARLSEG 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    +  I +L  +        F+ +   +  SV  L    ++   G      L +
Sbjct: 65  ILLRRAGIKKPILILGYVGLDDISKCFEND---IDISVYDLGLAKEIDKLGYKLKAHLVL 121

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLI 186
           DTG  R+G    +  +       K L  + +I   SH + AD+  +     Q E F  +I
Sbjct: 122 DTGHGRIGFRADQIENIRQ---LKTLSNIKIISAFSHFSTADEEDNSFTEKQEEIFDYII 178

Query: 187 SHYKG---IE-ASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTA 238
              K    +E   LA+S+G +    +   + R GI LYG       + N    ++     
Sbjct: 179 EQIKNDFDLEFVHLANSAGTIRQKIFK-DMYRIGICLYGLYPSEVVRDNTEIKLEKTFKL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +  I+    G  +SYG     ++   +A  AIGYADGY    S +           G
Sbjct: 238 YSFVHFIKNIDKGTPISYGRTFVSSKPMKVATVAIGYADGYCRAFSNM-----------G 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           K +I GY   +LG++ MD  M D+T  L +++GD ++I+    ++D  A   GT +Y+L+
Sbjct: 287 KVYINGYGCKVLGRVCMDQMMVDVT-GLDVKIGDRVEIYK---EIDKDANLIGTISYELM 342

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 343 TNISMRVKRIY 353


>gi|6708455|gb|AAF25943.1|AF214487_1 alanine racemase [Mycobacterium avium]
          Length = 391

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 177/380 (46%), Gaps = 38/380 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +  A+  AVVK + YG G  + A A   AG  +  V +V+E + 
Sbjct: 21  VDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATVDEALA 80

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQL-TFYSKLMSCGVSHPYA 125
           LR     A   VL  +HP    I F   L+  +    SS  QL    + +   G +    
Sbjct: 81  LRAAGISAP--VLAWLHP--PGIDFRPALLAGVQIGLSSQRQLDELLTAVRDTGRTATVT 136

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACADDPSSHVNSVQLER 181
           ++VDTG NR G+   +       +  + + + +++    +SH+  AD P++ VN VQ +R
Sbjct: 137 VKVDTGLNRNGVPPAQYPSML-TALRRAVAEQAIVPRGLMSHMVYADQPANPVNDVQAQR 195

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV- 235
           F  +++  +  G+    A L++SS  +  P+  F + RPGI++YG    + +   M  V 
Sbjct: 196 FTDMLAQAREQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYG-LSPVPELGDMGLVP 254

Query: 236 -VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +  + L++   AGE VSYG      RD+ +A+  +GYADG   +L G         
Sbjct: 255 AMTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRLQVS---- 310

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALA 349
                  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A  
Sbjct: 311 -------INGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADL 363

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y+++     R  + Y
Sbjct: 364 LGTIHYEVVTSPRGRITRTY 383


>gi|329726098|gb|EGG62570.1| alanine racemase [Staphylococcus epidermidis VCU144]
          Length = 382

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 176/388 (45%), Gaps = 42/388 (10%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 2   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMS 117
           F V +++E ++LR++   A++ VL G+ P +  EK I     + V S         ++  
Sbjct: 62  FAVATLDEAIELRMHGVDAKLLVL-GVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPD 120

Query: 118 CGVSHPY-ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDP 170
               + +  +++DTG  R+G+      +E +D  +     K   L    + +H A AD+P
Sbjct: 121 DNQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLIN-----KRDHLVFEGVFTHFASADEP 175

Query: 171 SSHVNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
            S +N  Q   F+ +++   K I     +S+G LL         R GISLYG   ++ + 
Sbjct: 176 GSSMNE-QYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVK 234

Query: 228 KSHPMQTVVTAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            +  +    +A+  +  + ++    GE VSYG       +  IA+  IGYADGY  ++ G
Sbjct: 235 DNVKVHLRPSAQLVSETVQVKTLKVGETVSYGRTFIADEEMTIAILPIGYADGYLRSMQG 294

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI---- 341
                    F+     + G    ++G+I MD  +  +     ++ G+ + +    +    
Sbjct: 295 --------AFVN----VNGSQCEVIGRICMDQMIVKVPS--HVKTGEKVILMDNHVDSTQ 340

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
             + VA   GT NY++L  +  R  + Y
Sbjct: 341 SAEAVANKQGTINYEVLCNLSRRLPRIY 368


>gi|27468592|ref|NP_765229.1| alanine racemase [Staphylococcus epidermidis ATCC 12228]
 gi|57867600|ref|YP_189248.1| alanine racemase [Staphylococcus epidermidis RP62A]
 gi|293366041|ref|ZP_06612729.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38372172|sp|Q8CNK7|ALR_STAES RecName: Full=Alanine racemase
 gi|81673927|sp|Q5HME5|ALR_STAEQ RecName: Full=Alanine racemase
 gi|27316139|gb|AAO05273.1|AE016749_219 alanine racemase [Staphylococcus epidermidis ATCC 12228]
 gi|57638258|gb|AAW55046.1| alanine racemase [Staphylococcus epidermidis RP62A]
 gi|291319764|gb|EFE60122.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734113|gb|EGG70431.1| alanine racemase [Staphylococcus epidermidis VCU045]
          Length = 382

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 175/384 (45%), Gaps = 34/384 (8%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 2   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMS 117
           F V +++E ++LR++   A++ VL G+ P +  EK I     + V S         ++  
Sbjct: 62  FAVATLDEAIELRMHGVDAKLLVL-GVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPD 120

Query: 118 CGVSHPY-ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHV 174
               + +  +++DTG  R+G+   +      +  NK+   L    + +H A AD+P S +
Sbjct: 121 DNQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKR-DHLVFEGVFTHFASADEPGSSM 179

Query: 175 NSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
           N  Q   F+ +++   K I     +S+G LL         R GISLYG   ++ +  +  
Sbjct: 180 NE-QYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVK 238

Query: 232 MQTVVTAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           +    +A+  +  + ++    GE VSYG       +  IA+  IGYADGY  ++ G    
Sbjct: 239 VHLRPSAQLVSETVQVKTLKVGETVSYGRTFIADEEMTIAILPIGYADGYLRSMQG---- 294

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDD 345
                F+     + G    ++G+I MD  +  +     ++ G+ + +    +      + 
Sbjct: 295 ----AFVN----VNGSQCEVIGRICMDQMIVKVPS--HVKTGEKVILMDNHVDSPQSAEA 344

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA   GT NY++L  +  R  + Y
Sbjct: 345 VANKQGTINYEVLCNLSRRLPRIY 368


>gi|154502763|ref|ZP_02039823.1| hypothetical protein RUMGNA_00577 [Ruminococcus gnavus ATCC 29149]
 gi|153796646|gb|EDN79066.1| hypothetical protein RUMGNA_00577 [Ruminococcus gnavus ATCC 29149]
          Length = 383

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 172/387 (44%), Gaps = 31/387 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M  +  +  +IDL A+  N   M    G  A+  AVVK + YG G   IA  L +   V 
Sbjct: 2   MEKHSRVYAEIDLDAISYNMEQMKKRVGEGAKFIAVVKTDGYGHGAVPIACMLDDDPDVW 61

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MS 117
            +   ++EE V+L     Q    VL  + P Q + +    +   + ++      S L   
Sbjct: 62  GYATATLEEAVELHRAGIQKPTMVLGCVFPDQYEEMIKEEVRATVYTLDMAHEISNLARK 121

Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHV 174
            G +  + +++DTG  RLG  + +E+ D       +KL  + L  + +H A AD+     
Sbjct: 122 LGKTAYFHIKIDTGMERLGFPATEESADLIGQI--EKLPNVCLEGMFTHFAKADELDKTF 179

Query: 175 NSVQLERFRTLISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
           +  Q  +F  + +    +GI  S     +S+GI+  P +   L R GI+LYG   ++++ 
Sbjct: 180 SEEQYRKFVWMRNEVEKRGISISQYHCDNSAGIIDFPQWKQNLVRAGIALYGLYPSEEVK 239

Query: 228 KSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           K    ++  +   + +  +++   G  +SYGG     +   +A   +GY DGY   LS  
Sbjct: 240 KETVDLKPALRLVSHVSFVKEVEPGASISYGGTFTADKKMKVATIPVGYGDGYARGLSNR 299

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                      G+  I+G    ILG++ MD  M D+TD       D + + G D    I 
Sbjct: 300 -----------GEVLIRGKRARILGRVCMDQFMVDVTDIPDTVFMDEVVLIGRDGDDEIT 348

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++++   G  NY+ +  +G R  + Y
Sbjct: 349 VEELSEICGRFNYEFVCCLGKRIPRVY 375


>gi|148543492|ref|YP_001270862.1| alanine racemase [Lactobacillus reuteri DSM 20016]
 gi|184152900|ref|YP_001841241.1| alanine racemase [Lactobacillus reuteri JCM 1112]
 gi|227363641|ref|ZP_03847755.1| alanine racemase [Lactobacillus reuteri MM2-3]
 gi|325681836|ref|ZP_08161355.1| alanine racemase [Lactobacillus reuteri MM4-1A]
 gi|166969414|sp|A5VI51|ALR_LACRD RecName: Full=Alanine racemase
 gi|226711051|sp|B2G5M9|ALR_LACRJ RecName: Full=Alanine racemase
 gi|148530526|gb|ABQ82525.1| alanine racemase [Lactobacillus reuteri DSM 20016]
 gi|183224244|dbj|BAG24761.1| alanine racemase [Lactobacillus reuteri JCM 1112]
 gi|227071310|gb|EEI09619.1| alanine racemase [Lactobacillus reuteri MM2-3]
 gi|324978927|gb|EGC15875.1| alanine racemase [Lactobacillus reuteri MM4-1A]
          Length = 375

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 165/379 (43%), Gaps = 36/379 (9%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL AL++N       L  N++  AVVK NAYG G   +A     +G     V  ++E
Sbjct: 11  LIVDLDALRHNIQEQKKVLPENSKILAVVKANAYGNGLIPVAQTAMTSGASGLCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYA- 125
            ++LR    +A   VL GI   ++ +I     + + + S+  L  Y +L    V+ P   
Sbjct: 71  ALELRDNGIEAMTLVL-GITSVEDALIAAQAGVSLTVGSLDWLEQYHQLAQ--VAKPKKP 127

Query: 126 ----LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L +D+G  R+G +   A        +    +   + +H A AD P  +  + Q++R
Sbjct: 128 LKVHLGIDSGMGRIGFTEVAAFKQAVKLLDSPEFEFEGMFTHFATADSPDENYFNQQVQR 187

Query: 182 FRTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQT 234
           +   ++    +   +    S++G+           R GIS+YG    G D +  +  +Q 
Sbjct: 188 WHQFVASLAELPPYVHMANSATGLWHRETITANTIRMGISMYGQNPSGRD-LKLTLDLQP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V +  + I  +++  AG  VSYG      +D  +A   IGYADGYP  ++G         
Sbjct: 247 VSSLVSSISFVKQLKAGRSVSYGATYTAEQDEWLATLPIGYADGYPRCMTGY-------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
               K  + G    I G++ MD  M  +       VG  + + G     +I   D+A  +
Sbjct: 299 ----KVLVDGQFCDIAGRVCMDQMMIRLPKYYP--VGTPVVLMGKSGDQEITATDLAERA 352

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 353 GTINYEILTNISNRVHRIY 371


>gi|167770383|ref|ZP_02442436.1| hypothetical protein ANACOL_01726 [Anaerotruncus colihominis DSM
           17241]
 gi|167667390|gb|EDS11520.1| hypothetical protein ANACOL_01726 [Anaerotruncus colihominis DSM
           17241]
          Length = 405

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 165/388 (42%), Gaps = 45/388 (11%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL  + +N   +   L+   RT AVVK +AYG G   ++ AL   G   F V+++ E 
Sbjct: 10  EIDLDRIVHNHRIIRQRLTPGCRTMAVVKADAYGHGDGYVSRALQQDGADWFAVSNINEA 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
           V LR       + +L    P    ++ + +L   + S       SK  +   ++    ++
Sbjct: 70  VSLRRQGVVRPVLILGYTPPEMAGLLVEQSLTQTVYSGEYARALSKESAARKLTVDCHIK 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLERF 182
           +DTG +R+G   Q+       +   ++  L  +      +H +CAD+ S+   +    +F
Sbjct: 130 IDTGMSRIGFFAQQGHAAQAANEIARVCALPGLSCTGAFTHFSCADEYSADSRAFTHRQF 189

Query: 183 RTLIS-----HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--------GTDKI 226
              +         G+E  L    +S+  L  P YH  + RPG+ LYG        G   +
Sbjct: 190 EVFMETLGLLKQAGVEFELRHCCNSAATLAYPEYHLDMVRPGVVLYGLSPSPECAGMAAL 249

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR-DSLIAVAAIGYADGYPLTLSG 285
             +  + T VT      +++       VSYG +    +    IA  AIGYADGY    + 
Sbjct: 250 LPAMSLYTTVT------MVKTLDQHAAVSYGRRYVTPKGGRRIASIAIGYADGYRRNFTN 303

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
                       G+  I+G   PI G + MD  M D+     ++ GD + + G +    I
Sbjct: 304 -----------KGRVIIRGQYAPITGAVCMDQLMVDVNAIDGVQSGDVVTLVGENGGAAI 352

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            LDD A  +GT NY+    IG R  + Y
Sbjct: 353 TLDDFAALNGTINYEECCLIGRRVPRVY 380


>gi|229102703|ref|ZP_04233403.1| Alanine racemase [Bacillus cereus Rock3-28]
 gi|228680711|gb|EEL34888.1| Alanine racemase [Bacillus cereus Rock3-28]
          Length = 408

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 166/379 (43%), Gaps = 32/379 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AGV    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKHVNDENIAMMAAVKANGYGHGAVEVAKAGIEAGVNQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +  I +D  ++  +  +  L   +++ +  + +  
Sbjct: 88  EAIELREAGITVPILILGYTSVAAAESAIQYD--VMMTVYRIEDLQGINEI-AQRLQNKA 144

Query: 125 ALQV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            +QV  DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F
Sbjct: 145 RIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLF 204

Query: 183 RTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
              ++    +   +     ++S+G +   N    + R GI +YG        H    +Q 
Sbjct: 205 EKAVNTANELGMQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTVVSLQP 264

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ ++++  ++ A     VSYG     T +  IA   IGYADGY   LS          
Sbjct: 265 ALSLKSKVAHVKHATKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN--------- 315

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS---- 350
              G   I G  VP++G++ MD  M D+T ++ ++VGD +  +G   + +          
Sbjct: 316 --KGYALINGVRVPVIGRVCMDQLMLDVTKAMPVQVGDDVVFYGKQGEEEIAVEEVADML 373

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++   +  R  + Y
Sbjct: 374 GTINYEVTCMLDRRIPRVY 392


>gi|300857828|ref|YP_003782811.1| alanine racemase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685282|gb|ADK28204.1| Alanine racemase [Corynebacterium pseudotuberculosis FRC41]
 gi|302330118|gb|ADL20312.1| Alanine racemase [Corynebacterium pseudotuberculosis 1002]
          Length = 370

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 171/381 (44%), Gaps = 34/381 (8%)

Query: 6   FLRLKIDLTALKNNWHSMN--ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            L  +IDL A+ +N   +   A +  A+   VVK + Y  G  ++A  +   G   F V 
Sbjct: 3   LLEARIDLAAIAHNTRLIKDKAAAQGAQLMCVVKADGYNHGAVEVATVMEENGADQFGVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           ++ E + LR    ++ I   +   P Q+    I  + +L  +      L     L+    
Sbjct: 63  TIGEALALREGGIESSILS-WIWSPEQDLGAAITAEIDLAAI-----SLEHVKALVRASE 116

Query: 121 SH-----PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           S+        ++VDTG +R G+  Q+  +      + +  Q++ + SH + AD+  S   
Sbjct: 117 SYGKKPVRVTVKVDTGLHRSGVDKQDWRESFCMLRDAENIQVTGVFSHFSSADESDSTET 176

Query: 176 SVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q   F   I   +  G+E     +A+S   L  P+ +F + RPG++LYG      +SH
Sbjct: 177 EQQERAFLNAIELGRSLGLELPVNHIANSPATLNRPDLYFDMVRPGLALYGHEPIPGESH 236

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++   R+ +++    GE  SYG   +  +D  + V  +GYADG P +  G     
Sbjct: 237 GLREAMSWVGRVTVVKPIARGEGTSYGLTWRAEQDGYLCVVPVGYADGLPRSAQG----- 291

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVAL 348
              + +GG+ +      P +G++ MD  +  + ++   +  GD   I GP  +   ++A 
Sbjct: 292 HLEITIGGRRY------PQVGRVCMDQIVVALGENPYGVAQGDEAVILGPTGMTATELAT 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A GT NY+L+ R   R  + +
Sbjct: 346 AMGTINYELVCRPCGRTVRVF 366


>gi|298207069|ref|YP_003715248.1| alanine racemase [Croceibacter atlanticus HTCC2559]
 gi|83849703|gb|EAP87571.1| alanine racemase [Croceibacter atlanticus HTCC2559]
          Length = 368

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 169/372 (45%), Gaps = 25/372 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L+AL +N++ + + ++ + +  AVVK   YG     +A  L   G   F V    E
Sbjct: 9   LEINLSALGHNYNYLKSKVNTSVKLMAVVKAFGYGSDSVMVAKELQTLGADYFAVAYTSE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYA 125
           GV+LR       I VL+ +    +++I +  L P I S+  L  +           +P  
Sbjct: 69  GVRLRDENITTPILVLHPLANAFKELI-ERCLEPSIYSLKTLREFIATAQTLKQKEYPIH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           L+ ++G NRLG + ++  +      N    +++ ++SHL  ++D + +     Q+  F +
Sbjct: 128 LKFNSGLNRLGFNEKDVPEMYSLLKNTTAVKVTSLMSHLVASEDHNLTDFTHNQISSFVS 187

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
               +K     +     +++SGIL  P  HF + R GI LYG  +   +   ++ + T +
Sbjct: 188 FTEDFKTEFGYMPMRHQSNTSGILNFPEAHFDMVRSGIGLYGYGNSSTEDLALKPIATLK 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + I  +     G  V Y       R ++ A   +G+ADG                +  GK
Sbjct: 248 SVISQLHNIPKGSSVGYNRGFIADRTTVSATIPLGHADGIGRQ------------YGKGK 295

Query: 300 G--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           G   + G   PILG + MDMTM D+T  +  + GD + IFG      + A  + T +Y++
Sbjct: 296 GCFIVNGKKAPILGNVCMDMTMVDVT-GIECQEGDEVIIFGAYQNASEFAKGAQTISYEI 354

Query: 358 LVRIGTRYAKFY 369
           L  +  R  + +
Sbjct: 355 LTSVSQRVKRTF 366


>gi|317471394|ref|ZP_07930748.1| alanine racemase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901145|gb|EFV23105.1| alanine racemase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 294

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 125/258 (48%), Gaps = 26/258 (10%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           ++VDTG NR+G    E          +KL  + +  I +H ACAD+        Q E F 
Sbjct: 34  IKVDTGMNRIGFKPTEE-SVGQVQRIQKLPNIKIQGIFTHFACADEKDKTSARHQKELFD 92

Query: 184 TLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTV 235
             +S    KGIE     +++S+ I+        + R GI  YG   +++++KS   ++  
Sbjct: 93  QFVSKIEEKGIEIPVKHVSNSAAIMDLRECRMDMVRSGIITYGLYPSEEVDKSAIDLKPA 152

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + +I +++   GE VSYG      R + IA   +GYADGYP  LS           
Sbjct: 153 LSLISHVIHVKEVGPGEGVSYGSTFVTDRKTRIATIPVGYADGYPRALSSR--------- 203

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
             G+  I+G   PI+G+I MD  M D+TD   + V D + + G +    I +++ A  +G
Sbjct: 204 --GRVIIRGQYAPIIGRICMDQFMVDVTDIEGVSVMDRVTLVGTEGDKNISVEEAADLAG 261

Query: 352 TTNYDLLVRIGTRYAKFY 369
           + NY+ +  IG R  + Y
Sbjct: 262 SFNYEFVCGIGKRVPRVY 279


>gi|322378393|ref|ZP_08052847.1| alanine racemase, biosynthetic (alr) [Helicobacter suis HS1]
 gi|322380074|ref|ZP_08054330.1| biosynthetic alanine racemase [Helicobacter suis HS5]
 gi|321147481|gb|EFX42125.1| biosynthetic alanine racemase [Helicobacter suis HS5]
 gi|321149149|gb|EFX43595.1| alanine racemase, biosynthetic (alr) [Helicobacter suis HS1]
          Length = 389

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 170/381 (44%), Gaps = 34/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID  AL +N+  ++ ++      AVVK NAYG+G  + +      G     V + EE 
Sbjct: 22  IEIDTKALAHNFKVISEVADGMAIMAVVKANAYGVGALEASRVFIEQGATYLGVATYEEA 81

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
           +++RL+     I +L        + +   ++   + S  Q  ++S++ +S        ++
Sbjct: 82  LEVRLHFASIPILILGFTPTNMAEDLIKNHITQTLFSYEQACYFSQVALSLKQKLKVHIK 141

Query: 128 VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG    Q++ +        K  ++  I +H + AD       ++Q ERF   +
Sbjct: 142 IDTGMSRLGFFPTQQSANTIAKIAQLKGLEVEGIFTHHSNADSLYKGYATMQAERFIEFL 201

Query: 187 SHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHPMQT 234
                +  S     +A+S+  +  PNY   + R G++LYG    I        K   ++ 
Sbjct: 202 DLLDQLGLSFKYRHMANSAATISMPNYGLDMARVGLALYGLHPSIYTQDALLKKGFELKN 261

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T +A+I+ +++  AG L+ YG        + + V  +GY DG+             S 
Sbjct: 262 VLTLKAQIVSLKEIPAGRLIGYGEDFYCLEPTRVGVLPLGYGDGF-------------SK 308

Query: 295 FLGGK--GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
            LG K  G + G  +PI+G + MD    D+  ++  + GD + + G      +   D+A 
Sbjct: 309 VLGNKAWGLLHGKKIPIIGGVCMDQCFVDL-GAIQAKEGDTVILLGDSKSGAMGAGDIAK 367

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             G  NY+ +  +  R  + Y
Sbjct: 368 ILGIINYEAITMLTKRLPRVY 388


>gi|254776802|ref|ZP_05218318.1| alanine racemase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 391

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 177/380 (46%), Gaps = 38/380 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +  A+  AVVK + YG G  + A A   AG  +  V +V+E + 
Sbjct: 21  VDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATVDEALA 80

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQL-TFYSKLMSCGVSHPYA 125
           LR     A   VL  +HP    I F   L+  +    SS  QL    + +   G +    
Sbjct: 81  LRAAGISAP--VLAWLHP--PGIDFRPALLAGVQIGLSSQRQLDELLAAVRDTGRTATVT 136

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACADDPSSHVNSVQLER 181
           ++VDTG NR G+   +       +  + + + +++    +SH+  AD P++ VN VQ +R
Sbjct: 137 VKVDTGLNRNGVPPAQYPSML-TALRRAVAEEAIVPRGLMSHMVYADQPANPVNDVQAQR 195

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV- 235
           F  +++  +  G+    A L++SS  +  P+  F + RPGI++YG    + +   M  V 
Sbjct: 196 FTDMLAQARAQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYG-LSPVPELGDMGLVP 254

Query: 236 -VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +  + L++   AGE VSYG      RD+ +A+  +GYADG   +L G         
Sbjct: 255 AMTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRLQVS---- 310

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALA 349
                  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A  
Sbjct: 311 -------INGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADL 363

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y+++     R  + Y
Sbjct: 364 LGTIHYEVVTSPRGRITRTY 383


>gi|118465728|ref|YP_883507.1| alanine racemase [Mycobacterium avium 104]
 gi|20141183|sp|Q9L888|ALR_MYCAV RecName: Full=Alanine racemase
 gi|166969418|sp|A0QKR9|ALR_MYCA1 RecName: Full=Alanine racemase
 gi|118167015|gb|ABK67912.1| alanine racemase [Mycobacterium avium 104]
          Length = 388

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 177/380 (46%), Gaps = 38/380 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +  A+  AVVK + YG G  + A A   AG  +  V +V+E + 
Sbjct: 18  VDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATVDEALA 77

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQL-TFYSKLMSCGVSHPYA 125
           LR     A   VL  +HP    I F   L+  +    SS  QL    + +   G +    
Sbjct: 78  LRAAGISAP--VLAWLHP--PGIDFRPALLAGVQIGLSSQRQLDELLTAVRDTGRTATVT 133

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACADDPSSHVNSVQLER 181
           ++VDTG NR G+   +       +  + + + +++    +SH+  AD P++ VN VQ +R
Sbjct: 134 VKVDTGLNRNGVPPAQYPSML-TALRRAVAEQAIVPRGLMSHMVYADQPANPVNDVQAQR 192

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV- 235
           F  +++  +  G+    A L++SS  +  P+  F + RPGI++YG    + +   M  V 
Sbjct: 193 FTDMLAQAREQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYG-LSPVPELGDMGLVP 251

Query: 236 -VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +  + L++   AGE VSYG      RD+ +A+  +GYADG   +L G         
Sbjct: 252 AMTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRLQVS---- 307

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A  
Sbjct: 308 -------INGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADL 360

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y+++     R  + Y
Sbjct: 361 LGTIHYEVVTSPRGRITRTY 380


>gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
 gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
          Length = 824

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 167/373 (44%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L AL  N +   + +    +   ++K N YG G  +IA  L +  V    V   +E
Sbjct: 465 LEVNLNALVENLNYYRSFMKPETKLVCMIKANGYGTGAVEIAKTLQDHRVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKL-MSCGVS-HP 123
           GV LR     + I ++   +P     K +FD  L P + S   L    K     G++ +P
Sbjct: 525 GVTLRNNGITSSIMIM---NPEMTAFKTMFDYELEPEVYSFRLLDALIKAARKEGIAGYP 581

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACAD-----DPSSHVNSV 177
             +++DTG +RLG   Q+ ++   + F  +   +   + SH   +D     D S H   +
Sbjct: 582 VHIKLDTGMHRLGFDPQQDIEKLIDVFKHQNALIPRSVFSHFVGSDSNDFDDFSRHQFVL 641

Query: 178 QLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
             E  R + S +   I   + +S+GI   P     + R GI LYG   + N    +  V 
Sbjct: 642 FDEASRKIQSAFPHKILRHIDNSAGIEHFPERQLDMCRLGIGLYGVNPRSNAI--IHNVC 699

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ +R   A E + Y  +  + RDSLIA   IGYADG    L    + H      
Sbjct: 700 TLKTTILQLRIVKAHETIGYSRRGTVERDSLIAAIPIGYADGLNRRLG---NRH------ 750

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
            G   + G     +G I MD+ M D+T  +  + GD ++IFG  + +  ++ A  T  Y+
Sbjct: 751 -GYCLVNGKKADYIGNICMDVAMIDVT-GIDCKEGDAVEIFGDRLPVTVLSDALSTIPYE 808

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 809 VLTGISNRVKRVY 821


>gi|72163005|ref|YP_290662.1| alanine racemase [Thermobifida fusca YX]
 gi|123628791|sp|Q47LN3|ALR_THEFY RecName: Full=Alanine racemase
 gi|71916737|gb|AAZ56639.1| alanine racemase [Thermobifida fusca YX]
          Length = 374

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 172/387 (44%), Gaps = 38/387 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + F   +IDL A+  N   +   +  A+   VVK + YG G    A A    G       
Sbjct: 2   SSFAEARIDLDAISGNIALLAERAAGAQVMGVVKADGYGHGMVPAARAALAGGATWLGTA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDTNL----IPVISSVPQLTFYSKLM 116
            + E ++LR     A I   + + PG+   E I    +L    + VI+ V  +    +  
Sbjct: 62  FIAEALQLRAAGIDAPILA-WLVPPGEPLTEAIDAGIDLGIGSMWVINEV--IDAARQAR 118

Query: 117 SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSH 173
                H   L+VDTG NR G+     +      +  +  G L++  + SHLACAD+P + 
Sbjct: 119 RQARIH---LKVDTGLNRGGIGPADWSAAAAALARAEAAGLLTVTGVFSHLACADEPDNP 175

Query: 174 VNSVQLERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
             + QLE F   +S     G+      +A+S+ +L  P+  F L RPGI+ YG +     
Sbjct: 176 ATTAQLEAFHQALSVVDKAGLHPQVRHIANSAALLTRPDARFDLVRPGIATYGLSPIPGL 235

Query: 229 SHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             P ++  +T  A ++  ++   G  VSYG +    R++ +A+  +GY DG P       
Sbjct: 236 DVPGLRPAMTLSATLVGCKRVRPGSGVSYGYRYVTDRETNLALVPLGYGDGVPRAA---- 291

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKL 343
           +  +P        F+ G    I G + MD  + DI D  ++  GD   +FGP    +   
Sbjct: 292 TNRAPV-------FVAGRRRTIAGTVCMDQFVVDIGDD-TVTPGDRAILFGPGDHGEPTA 343

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
            D A A  T +Y+++ RIG R  + YT
Sbjct: 344 QDWADALDTISYEIVTRIGRRVPRVYT 370


>gi|18476140|gb|AAK58491.1| serine racemase VanTc3 [Enterococcus casseliflavus]
          Length = 700

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 37/366 (10%)

Query: 15  ALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDFFAVATLEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  I S         L    +     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAH---GHALAQTSIPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNS-VQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D  D +S + +  Q+  F  L++   
Sbjct: 467 RLGVA--PDLETVTGLYALPSLKITRIFSHLGSSDQLDTASILRTQAQITCFDDLLA--- 521

Query: 191 GIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTA 238
           G+ A         L SS GIL  P  H+   RPGI L G     N+       +Q ++T 
Sbjct: 522 GLSARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTL 581

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A ++  +   AGE + YG      R + I + +IGY DG P  LS    + S       
Sbjct: 582 KALLVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQGFQLS------- 634

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
               +G ++P +G + MDM + D+TD   + V   +++          A  + T   +L+
Sbjct: 635 ---YQGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVIS---DWTTTAYQAQTITNELI 688

Query: 359 VRIGTR 364
            R+G+R
Sbjct: 689 SRLGSR 694


>gi|146743648|gb|ABQ43055.1| alanine racemase [Borrelia burgdorferi]
          Length = 357

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 154/349 (44%), Gaps = 31/349 (8%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 26  GEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 85

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P ++    L  +S    C +        L++D G NR G+ + +AL+
Sbjct: 86  KKEIKNLIKFELVPFVADFEYL--FSIEKECTLQKNKIKVHLKIDIGMNRYGIKIDDALE 143

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  + SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 144 IATYIQNSKFLELEGVCSHLPSTENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 201

Query: 201 GILLGPNY----HFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGEL 253
           G ++  NY     F + RPG+ LYG         P    + V++  +++I I+    GE 
Sbjct: 202 GHII--NYKLSPQFNMVRPGLILYGYCQSQKNKKPALNFKPVLSLFSKVIFIKNVKKGEK 259

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           +SY G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+
Sbjct: 260 ISYSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKV 308

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            M++ + +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG
Sbjct: 309 CMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 357


>gi|145219160|ref|YP_001129869.1| alanine racemase [Prosthecochloris vibrioformis DSM 265]
 gi|145205324|gb|ABP36367.1| alanine racemase [Chlorobium phaeovibrioides DSM 265]
          Length = 368

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 169/378 (44%), Gaps = 35/378 (9%)

Query: 11  IDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           + L  L++N   +   +G   R   VVK NAYG    +++  L   GV DF V +++E +
Sbjct: 6   VSLQHLQHNLSEIRRKTGEGVRIMGVVKANAYGHDVHRVSETLEQNGVTDFGVANIQEAI 65

Query: 70  KLR----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY---SKLMSCGVSH 122
           +L+    L  P +   +L    P   +I F       ++   + T +   S   + G   
Sbjct: 66  ELQTGRALKKPAS---ILAFASPLSSQIPFYLKHGIEMTLCNKETLFAAESHAAATGKKL 122

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLE 180
              ++VDTG  RLGL    A++    S      ++  I +H A   D S  +     QL 
Sbjct: 123 RVHIKVDTGMGRLGLPPAAAMELLRASEQCPGIEVKGIYTHFA---DSSGDMEFTRRQLR 179

Query: 181 RFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
            F +L S Y     K +    A+S  IL  P  +  + RPGI+LYG     +      ++
Sbjct: 180 DFLSLASEYEHSSGKQVLRHAANSGAILSLPEANLDMVRPGITLYGYHPAKETGTRLSLK 239

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  E +I  ++   +G  +SY    +    + IA  A GYADGYP  LSG  +     
Sbjct: 240 PVMQVEGKIAFLKTVPSGSTISYCRTWRAPATTTIATIAAGYADGYPRALSGKGAR---- 295

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASG 351
           V   G+ F +      +G ITMD  M D+  S + +VGD + +FG +     + +A  S 
Sbjct: 296 VTANGQSFSQ------VGTITMDQIMVDLGTSSTAKVGDRVILFGWEGPTTAETLADLSN 349

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++L  +  R  + +
Sbjct: 350 TISYEILCAVSRRADRIF 367


>gi|295094258|emb|CBK83349.1| alanine racemase [Coprococcus sp. ART55/1]
          Length = 377

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 161/372 (43%), Gaps = 26/372 (6%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL  L++N  ++ + L       AV+K + Y  G   + P L   G+  + V   EEG 
Sbjct: 14  IDLAKLRSNIANIKSRLKPGVEFIAVMKGDGYRHGIAGLYPTLKECGIDSYAVAIWEEGK 73

Query: 70  KLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            LR       I +L         E   +D +L  V S        +     G      ++
Sbjct: 74  MLRDAGATESILILGDTADDMLDEAAKYDLDLT-VFSMEGAENMAAAARRAGKKQNVQIK 132

Query: 128 VDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++TG NR+G  + QE+ D            ++ I +H A AD+        QL+ +   +
Sbjct: 133 LNTGMNRIGFPVCQESFDTIKKICEMDDLNVTGIFTHFARADEGDHTSARKQLDLYLHAV 192

Query: 187 SHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
           +  + +     +  +A+S  IL+ P       R G  LYG T   D   K+  +Q +++ 
Sbjct: 193 NELEKMGVVIPKHHVANSPAILMLPEAQLDAVRCGDILYGLTPSDDFDWKNSGLQEILSW 252

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              + ++++   G  + YGG     R + IA   +G+ADGY   LS             G
Sbjct: 253 YTYVAMVKEVPTGSEIGYGGTFVTERPTKIATLPVGFADGYSRYLSN-----------KG 301

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           K  I G+  PI+G++ MD  M D+TD   ++ GD + + G  + ++D+A     TN D++
Sbjct: 302 KVIINGHEAPIIGRVCMDQCMADVTDIPDVQRGDTVTLLGEGMSIEDMANML-DTNVDVI 360

Query: 359 V-RIGTRYAKFY 369
           V  I  R  + Y
Sbjct: 361 VCNISVRVPRVY 372


>gi|312898652|ref|ZP_07758042.1| alanine racemase [Megasphaera micronuciformis F0359]
 gi|310620571|gb|EFQ04141.1| alanine racemase [Megasphaera micronuciformis F0359]
          Length = 403

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 160/380 (42%), Gaps = 36/380 (9%)

Query: 10  KIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL     N   +  ++G  R   AVVK +AYG G   ++      G     V+S++EG
Sbjct: 24  EIDLDRAAENMREIRRITGKDRLVTAVVKADAYGHGAVMLSKVFLQNGADRLAVSSLDEG 83

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127
            +LR     A I +L      + + + D ++ P + S      +S K +  G      + 
Sbjct: 84  TELRRAKITAPILILGHTAGERAEELLDNDIEPAVFSYRDAEMFSRKAVETGREVKIHIA 143

Query: 128 VDTGFNRLG-LSLQEALDFTHNSFNKKLGQL-----SLIISHLACADDPSSHVNSVQLER 181
            DTG  R+G +   EA++       KK+  L       I +H + AD         Q  R
Sbjct: 144 ADTGMCRIGYVPSPEAIEEV-----KKIAALPGITMQGIFTHFSEADIADKEWAHEQHSR 198

Query: 182 FRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
           F   I   KG   +       +S+G L  P++H ++ RPGI  YG     + +     ++
Sbjct: 199 FSAFIDALKGAGVTFNIHHCCNSAGTLELPDFHREMIRPGIIQYGYDASKEVLVTGTKIK 258

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++    I  ++    G+ V YG        + IA   IGYADGY   LS         
Sbjct: 259 PVMSLRCCITHLKTIYEGDCVGYGRHFTAKGPTKIATLPIGYADGYNRALSS-----KID 313

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
           V + G   ++ + V   G I MD  M D++    ++VGD + +FG      +  D++A  
Sbjct: 314 VIVHG---VRAHQV---GNICMDQCMIDVSHIPDVKVGDEVVLFGEQGSECVSADEIADT 367

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T  +++   I  R  + Y
Sbjct: 368 CHTIIHEITCNINRRVPRVY 387


>gi|329928943|ref|ZP_08282753.1| alanine racemase [Paenibacillus sp. HGF5]
 gi|328937195|gb|EGG33622.1| alanine racemase [Paenibacillus sp. HGF5]
          Length = 395

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 177/381 (46%), Gaps = 34/381 (8%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  L+ N+++   AL  + +  A VK NAYG G  ++A  L   G     V  ++E 
Sbjct: 11  EINLDHLRANYNAFREALPDHMKLLACVKANAYGHGAVEVARELQQLGAAYLSVAFLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA-- 125
           ++LR       I VL    P   +I ++ ++ I + SS  ++    K +      P    
Sbjct: 71  LELRQGGISVPILVLGYTPPEAVEIAYEYDVTITLFSS--EVLQAIKALPVKPEKPLKVH 128

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++D+G  RLGL   ++A+ F   +F+     +  + +H A AD+ +      Q  RF+ 
Sbjct: 129 IKIDSGMGRLGLLPGEDAISFIEEAFSLPQVVVEGMFTHFARADEENKDYTLGQYRRFQG 188

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN-KSHPMQTVV 236
           +    +  +  +      +S+  +  P   + + R GI LYG   +D++N K+  ++ V+
Sbjct: 189 VADALRDKDYHIPIIHTGNSAAAIDTPELSYNMVRVGIGLYGLYPSDEVNRKTVSLRPVM 248

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T + +++ ++       +SYG +    ++  I    IGYADG+   LSG           
Sbjct: 249 TLKTKLVYVKNLPPHSGISYGTKYVTEQEERIGTLPIGYADGFSRMLSG----------- 297

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD----IKLDDVAL 348
             +  I+G  VP++G I MD  M  +     ++  I+ G+ + + G      I  D++A 
Sbjct: 298 KAEVLIRGRRVPVVGNICMDQCMVSLKSFAEEAEQIKAGEEVVLIGQQSGECITADELAA 357

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT +Y+++  I  R  + Y
Sbjct: 358 KLGTIHYEVVCMIAHRVPRLY 378


>gi|318058076|ref|ZP_07976799.1| alanine racemase [Streptomyces sp. SA3_actG]
          Length = 378

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 158/379 (41%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   +   +  A   AVVK +AYG G    A A   AG     V +  E
Sbjct: 9   RAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPAE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR    + R+        G  +   + ++   +S    L    +   + G +    L
Sbjct: 69  ALALRAAGAEGRMLCWLWTPGGPWRAAIEADIDVSVSGQWALDEVAAAARAAGATARVHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +      N+   +   L  ++   SH ACAD+P     + QL  F 
Sbjct: 129 KADTGLGRNGCQPADWPALVGNALALQAEGLVRVVGLWSHFACADEPGHPSIAAQLTLFE 188

Query: 184 TL--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQT 234
            +  ++   G+ A    +A+S   L  P  H+ L RPGI++YG     T   +    ++ 
Sbjct: 189 EMTGLAARLGVRAEVRHIANSPATLSLPESHYDLVRPGIAMYGLSPSPTMGTHTDFGLRP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   A + L+++   G  VSYG       D+ + +  +GY DG P   SG         
Sbjct: 249 VMRLVAPLALVKRVPGGHGVSYGHLYVTPGDTTLGLVPLGYGDGIPRHASG--------- 299

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   + G    + G+I MD  + D+        G    +FGP    +   +D A A+
Sbjct: 300 --SGPVLVNGKWHTVAGRIAMDQFVVDLGGDTPAP-GSEAVLFGPGDRGEPSAEDWARAA 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            +  Y+++ RIG R  + +
Sbjct: 357 DSIVYEIVTRIGARVPRVH 375


>gi|317407371|gb|EFV87336.1| catabolic alanine racemase [Achromobacter xylosoxidans C54]
          Length = 376

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 40/350 (11%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AV+K NAYG G E+       A  Q   +  ++E V+ R       I +L G  +P    
Sbjct: 41  AVIKANAYGHGIEQAVAGFSKA--QGLAMLDLDEAVRCREAGWGGPILLLEGFFNPSDLD 98

Query: 93  IIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSL-------QEALD 144
           I+   +L   +    QL   ++  +S  V     L++++G NRLG S        + AL 
Sbjct: 99  IVDRYHLSVTVHQREQLDMLARARLSRRVD--IMLKLNSGMNRLGFSPAAYPAAHERALL 156

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL- 203
                    LG+++    H ACAD P       QL  F ++         S+ +S+  L 
Sbjct: 157 LQQQGVIGSLGKMT----HFACADGPQGITE--QLAVFNSVTHKMAAGPISVCNSAATLR 210

Query: 204 -----LGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVS 255
                +G        RPGI LYG +   D    +  ++  ++  + II +++  AG+ V 
Sbjct: 211 FAEIAVGSEAQAHWVRPGICLYGASPFADAEAAAFGLKPAMSLRSEIIAVQELKAGDSVG 270

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           YG   +  R   + + A GYADGYP         H+ +   G    + G    ++G+++M
Sbjct: 271 YGALFRADRPMRVGIVACGYADGYP--------RHAAT---GTPVVVAGIRTRLVGRVSM 319

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTR 364
           DM + D+    +  VG  + ++G +   +D+VALA+GT  Y+LL  +  R
Sbjct: 320 DMLIVDLDPIPAAGVGAPVSLWGEEGPSVDEVALAAGTIGYELLCALAPR 369


>gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
 gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
          Length = 825

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 170/377 (45%), Gaps = 36/377 (9%)

Query: 9   LKIDLTAL-KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ KN  H  + +    +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 466 LEVNLNAVVKNLNHYRSFMKPQTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYSKLMSCGVS-HP 123
           GV LR     + I ++   +P     K +FD +L P + S   L     +    G++  P
Sbjct: 526 GVTLRKNGITSNIMIM---NPEMTAFKTMFDYDLEPEVYSFRLLDALVKEAEKEGITGFP 582

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACAD-DPSSHVNSV 177
             +++DTG +RLG    + +D       ++L   + II     SH   +D D     ++ 
Sbjct: 583 VHIKLDTGMHRLGFDPHKDID----ELIRRLKHQNAIIPRSVFSHFVGSDCDDFDAFSAQ 638

Query: 178 QLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q E F    S  +      I   + +S+GI   P+    + R G+ LYG   + NK+  +
Sbjct: 639 QFELFTFGASKLQSAFDHKILFHMDNSAGIEHFPDRQMDMCRLGLGLYGINPRNNKT--I 696

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             + T +  I+ +     GE + Y  +  L RDS+I    IGYADG    LS   + H  
Sbjct: 697 NNISTLKTTILQLHHLATGESIGYSRKTILERDSVIGAIPIGYADGLDRHLS---NRH-- 751

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                G   + G     +G I MD+ M D+T  +  + GD ++IFG  + +  ++   GT
Sbjct: 752 -----GYCLVNGQKAEYVGNICMDVAMIDVT-GIDCKEGDCVEIFGDHLPVTVLSDIIGT 805

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I  R  + Y
Sbjct: 806 IPYEVLTGISNRVKRVY 822


>gi|77406426|ref|ZP_00783484.1| alanine racemase [Streptococcus agalactiae H36B]
 gi|77174959|gb|EAO77770.1| alanine racemase [Streptococcus agalactiae H36B]
          Length = 366

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 174/380 (45%), Gaps = 41/380 (10%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  IDL A+ NN  S+   +  + +T AVVK NAYG G  +++  + +  V  F V++++
Sbjct: 10  RALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKYIESI-VDGFCVSNLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I VL  + P Q  +  + N+   ++S+  L                +
Sbjct: 69  EAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAVDLSGLEVHI 128

Query: 127 QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQ----LSLIISHLACADDPSSHVNSVQLER 181
           +VD+G  R+G+  L E      N    +LG+    +  I +H A AD+  +   + QL  
Sbjct: 129 KVDSGMGRIGVRQLDEG-----NKLISELGESGASVKGIFTHFATADEADNCKFNQQLTF 183

Query: 182 FRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQ 233
           F+  IS        + AS +++S  L      F   R G+ +YG    GTD ++  +P+ 
Sbjct: 184 FKDFISGLDNCPDLVHASNSATS--LWHSETIFNAVRLGVVMYGLNPSGTD-LDLPYPIN 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ ++ +++   G  V YG   ++T D  +    IGYADG+   + G       S
Sbjct: 241 PALSLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGF------S 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
           V + G+      +  I+G+++MD     +    +I  G  +   G     +I   DVA  
Sbjct: 295 VIVNGE------LCEIIGRVSMDQMTIRLPQKYTI--GTKVTXIGQQGSCNITTTDVAQK 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++L  +  R  ++Y
Sbjct: 347 RQTINYEVLCLLSDRIPRYY 366


>gi|269796206|ref|YP_003315661.1| alanine racemase [Sanguibacter keddieii DSM 10542]
 gi|269098391|gb|ACZ22827.1| alanine racemase [Sanguibacter keddieii DSM 10542]
          Length = 412

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 166/392 (42%), Gaps = 25/392 (6%)

Query: 1   MHSNEF-LRLKIDLTALKNNWHSMNALSG-----NARTAAVVKDNAYGLGCEKIAPALYN 54
           M S  F  R  +DL A+++N   +   +       A+  AVVK + YG G    A A   
Sbjct: 1   MTSRYFPARAVVDLGAIRSNVTELARRAAPSADRQAQVLAVVKADGYGHGLVPAARAAVA 60

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYS 113
            G         +E + LR      R+             +   ++   ++ V  L    +
Sbjct: 61  GGATWLGAAQAQEALDLRAAGVTTRLLTWLAAPGAPYAELLRADVDVSVADVWALDAVVA 120

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDP 170
                G +    ++VDTG  R G+   E  D    +   +  G L +  I SHLA AD+P
Sbjct: 121 AARETGRTARVHVKVDTGLGRNGVMPDELGDVLARAVQAQSEGVLEVVGIWSHLALADEP 180

Query: 171 SSHVNSVQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDK 225
                  Q E F   +   +   A L     A+S+  L  P  H+ L RPG+++YG +  
Sbjct: 181 EHPSVLAQAEAFDDAVRLAERAGAHLEVRHLANSAATLTAPRLHYDLVRPGLAVYGLSPV 240

Query: 226 INKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
            +   P    +   +T EAR+  +++  AG  VSYG +   T D+++ V  +GYADG P 
Sbjct: 241 PDLGGPGDYGLVPAMTLEARLATVKRVPAGHGVSYGHRYTTTEDTVLGVVPVGYADGVPR 300

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341
             SG        V +G     +   + + G++ MD  + D+  + +   GD + +FG   
Sbjct: 301 HASGGPGTTGGPVRVGSGATAR--TLGVAGRVCMDQVVVDLGPAATEAAGDTVVLFGSGA 358

Query: 342 K----LDDVALASGTTNYDLLVRIGTRYAKFY 369
                  D A A+GT +Y++  R+G R  + Y
Sbjct: 359 DGGPTAQDWADAAGTISYEITTRLGARVPRVY 390


>gi|289550307|ref|YP_003471211.1| Alanine racemase [Staphylococcus lugdunensis HKU09-01]
 gi|289179839|gb|ADC87084.1| Alanine racemase [Staphylococcus lugdunensis HKU09-01]
          Length = 382

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 175/390 (44%), Gaps = 46/390 (11%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ NN+     L  N     V+K N YGLG  +IA  L + G   
Sbjct: 2   SDKYYRNTYINVDLAAINNNYRQFTQLHDNKTVIPVIKANGYGLGSVRIAQYLVDHGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI---PVISSVPQLTFYSKLM 116
           F V +++E ++LR++  +A+I +L G+ P     I D N      V  +VP  ++ S  +
Sbjct: 62  FAVATLDEAIELRMHGIKAQILIL-GVIP-----IEDINKAIQHRVAITVPSKSWLSSAI 115

Query: 117 SCGVSHPYA-----LQVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSLIISHLACADDP 170
                         +++DTG  RLG+  Q     T H     +      + +H ACAD+P
Sbjct: 116 KAINDDNEKRLWLHIKLDTGMGRLGIKNQAEYHQTIHLIEQHEHLVFEGVYTHFACADEP 175

Query: 171 SSHVNSVQLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDK 225
                  Q + F+T ++     + + A   +S+G L+         R GISLYG   ++ 
Sbjct: 176 GDSAQQ-QYQCFKTWVTSTDMPRYVHAQ--NSAGALMIDADICNAVRLGISLYGYYPSEY 232

Query: 226 INKSHPMQTVVTAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           + +   ++   +AE   +I+  ++   GE VSYG          I +  IGYADGY   +
Sbjct: 233 VKEEADIELQPSAELMTQIVQTKELQPGESVSYGSTYTAQSPIKIGIIPIGYADGYLRIM 292

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
            G         F+     +KG    ++G++ MD T+  I D   I  GD + +       
Sbjct: 293 QGH--------FVN----VKGQQCEVIGRVCMDQTIIKIND--DILEGDEVCVISKQQDS 338

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              +D +A    T NY++L  +G R  + Y
Sbjct: 339 IQSVDAIAKQQKTINYEVLCNLGRRLPRIY 368


>gi|160903082|ref|YP_001568663.1| alanine racemase [Petrotoga mobilis SJ95]
 gi|160360726|gb|ABX32340.1| alanine racemase [Petrotoga mobilis SJ95]
          Length = 374

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 163/357 (45%), Gaps = 35/357 (9%)

Query: 30  ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR---LYTPQARIFVLYGI 86
           A    V+K NAYG G   +A  ++  G     V  +EE +++    ++ P   IF  +  
Sbjct: 28  AHIIPVLKANAYGHGMLPLAMQVFKEGYSMLAVAYLEEALEILNRGIHLP-ILIFNYFSP 86

Query: 87  HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQVDTGFNRLGLSLQEALDF 145
              +E + F   L P I+S   L     ++   V    + + VDTG NR+G+  +E L  
Sbjct: 87  DDFKELLEFAHFLRPTITSSTFLEKVCDILGKDVDKFKFHINVDTGINRIGIK-EEKLPQ 145

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEAS---LASSS 200
                  +  Q+  + SH A AD+       VQ E+++ L+ +    GI+     +++S+
Sbjct: 146 LIKLIKDRNIQIEGVYSHFANADEKDDFT-RVQFEKYKGLLDYIIGSGIDVEKKHISNSA 204

Query: 201 GILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSY 256
             L  P +     RPGI+ YG     T KI++  P+  + +  A I   +     + + Y
Sbjct: 205 AALFFPEFALDYVRPGIATYGLQPSTTYKIDQLKPILELKSIVANI---QNLQPNDTIGY 261

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           G   ++ +    A+  IGYADGY   LS             G+  I G    ILG+++MD
Sbjct: 262 GRTYEVQKRMKTAIVPIGYADGYFRALSN-----------KGEVLINGKRSKILGRVSMD 310

Query: 317 MTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             + D+TD+ ++ +GD + I G      I  ++VA  + T NY++  RI  R  + Y
Sbjct: 311 QIVVDVTDN-NVSLGDEVVIIGRQKYDQITAEEVAENASTINYEVTSRIAQRVRRIY 366


>gi|253578412|ref|ZP_04855684.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850730|gb|EES78688.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 381

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 171/393 (43%), Gaps = 43/393 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M  +  ++  I L A+++N+  M   ++   +  AV+K +AYG G   +A  + +   + 
Sbjct: 1   MKKDSRVKAVISLDAVEHNFREMRKNIAEETKMIAVIKADAYGHGAVPVAHLIEDYDYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-----SVPQLTFYS 113
            F   + EE + LR       I +L         I+FD     ++      +V +     
Sbjct: 61  GFAAATAEEAIHLREAGITKPILIL--------GIVFDEYFPELVRYEIRPAVCEYEEAR 112

Query: 114 KLMSCGVSHPYALQV----DTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACAD 168
           KL    V     + +    DTG  R+G +  QE ++           ++  + +H A AD
Sbjct: 113 KLSDEAVLQKKTVHIHIALDTGMTRIGFADAQENVEEIKKISELPNLEIEGMFTHFARAD 172

Query: 169 DPSSHVNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG-- 221
           +       VQLER+       +  G+E  L   ++S+GI+  P  +  + R GI++YG  
Sbjct: 173 EYDRSPAMVQLERYLDFSRRVEEAGVEIPLHHCSNSAGIIRMPEANLNIVRAGITIYGIY 232

Query: 222 GTDKINKS-HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
            + ++ +    ++ V+  ++ +  ++   AG  +SYGG     R   +A   +GYADGY 
Sbjct: 233 PSSEVERDIVKLEPVMELKSHVTYVKDVPAGAAISYGGTYVADRKLRVATVPVGYADGYS 292

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
             LS             G   I G   PILG++ MD  M D+T+   ++ GD + + G D
Sbjct: 293 RQLSN-----------KGWVLIHGQKAPILGRVCMDQFMVDVTEIGDVKKGDEVTLIGRD 341

Query: 341 ----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
               I ++++    G  +Y+    I  R  + Y
Sbjct: 342 GDEFIGIEEIGDLCGRFSYEFACDISPRVPRVY 374


>gi|302869894|ref|YP_003838531.1| alanine racemase [Micromonospora aurantiaca ATCC 27029]
 gi|302572753|gb|ADL48955.1| alanine racemase [Micromonospora aurantiaca ATCC 27029]
          Length = 372

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 172/382 (45%), Gaps = 41/382 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A++ N   + A + +A   AVVK + YG G    A A  +AG     V ++ E 
Sbjct: 6   VRVDLDAIRENVTRLKAGT-SAELMAVVKGDGYGHGMVPAARAALDAGADQLGVCTLAEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYAL 126
           ++LR     A +   + + PG    + D   + V      LT   +++        P  L
Sbjct: 65  LRLREEGITAPVLA-WLLSPGLP--LHDGITVGVDLGCAGLTQLDEMIQASRRADRPARL 121

Query: 127 --QVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             ++DTG  R G ++ +    L+    +    L ++  + SH   AD P       QL  
Sbjct: 122 HLKIDTGLARGGATVADWPALLEAAAKAQADGLVEVVGVWSHFVYADSPGHPTTDRQLAV 181

Query: 182 FRT---------LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           F+          L   Y+     LA+S+  L  P+ HF L RPGI++YG +    +   +
Sbjct: 182 FQEGLEMVTRAGLRPRYR----HLANSAATLTRPDTHFDLVRPGIAVYGLSPVAGEQFGL 237

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +TA AR++L ++  AG  VSYG      +++ +AV  +GYADG P   S     ++ 
Sbjct: 238 RPAMTARARVMLTKRVAAGTGVSYGHTYLTEQEANLAVVPLGYADGVPRHAS-----NTG 292

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
            V L GK         I G++ MD  + D  D   +  GD   +FG     +   DD A 
Sbjct: 293 PVQLAGKRRT------ISGRVCMDQFVVDCGDD-EVTDGDVATLFGSGADGEPTADDWAE 345

Query: 349 ASGTTNYDLLVRI-GTRYAKFY 369
           A GT NY+++ R  G R  + Y
Sbjct: 346 AVGTINYEIVTRFGGVRVPRVY 367


>gi|138893881|ref|YP_001124334.1| alanine racemase [Geobacillus thermodenitrificans NG80-2]
 gi|196250545|ref|ZP_03149235.1| alanine racemase [Geobacillus sp. G11MC16]
 gi|134265394|gb|ABO65589.1| Alanine racemase [Geobacillus thermodenitrificans NG80-2]
 gi|196209894|gb|EDY04663.1| alanine racemase [Geobacillus sp. G11MC16]
          Length = 384

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 159/377 (42%), Gaps = 36/377 (9%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+ +N  ++   L    +  AVVK NAYG G  ++A     AG     V  ++E 
Sbjct: 11  EIDLDAIYDNVANLRRFLPDGTQVMAVVKANAYGHGDAQVATTALEAGASYLAVAILDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR     A I VL    P   ++     +   +     L   + + +        L++
Sbjct: 71  LALRQKGINAPILVLGASRPADVELAARHRITLTVFRADWLEEAASIYNGSTPVHLHLKM 130

Query: 129 DTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           DTG  RLG+  +E       L   H SF      L  + +H A AD+ ++   S Q  RF
Sbjct: 131 DTGMGRLGVKDEEETKRITTLIDRHPSF-----ILEGVYTHFATADEVNTDYLSYQYRRF 185

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP--MQTVV 236
             ++            A+S+ +L  P   F + R GIS+YG   +  I    P  ++   
Sbjct: 186 LHMLEWLPSRPPIVHCANSATVLRFPERAFNMARFGISMYGLAPSPSIKPLLPYELKEAF 245

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  +R++ +++   GE VSYG       +  I    IGYADG+   L  L   H      
Sbjct: 246 SLHSRLVHVKRLQPGEKVSYGATYTAQEEEWIGTLPIGYADGW---LRRLQHFHV----- 297

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G   PI+G+I MD  M  + + L   VG  + + G      I +DDVA    T
Sbjct: 298 ----LVNGQKAPIVGRICMDQCMIRLPEPLP--VGTKVTLIGRQGDEFISVDDVARYLET 351

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   I  R  + +
Sbjct: 352 INYEVPCTISYRVPRIF 368


>gi|171057608|ref|YP_001789957.1| alanine racemase [Leptothrix cholodnii SP-6]
 gi|226711053|sp|B1Y2H6|ALR_LEPCP RecName: Full=Alanine racemase
 gi|170775053|gb|ACB33192.1| alanine racemase [Leptothrix cholodnii SP-6]
          Length = 377

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 170/371 (45%), Gaps = 38/371 (10%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL +N       +G+A+  AV+K NAYG G E++ PAL   G     +  ++E  ++R  
Sbjct: 13  ALAHNLLQARRHAGDAKLWAVIKANAYGHGIERVWPALL--GADGLAMLDLDEAQRVRNL 70

Query: 75  TPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
             +  + +L G    ++ ++    NL  V+    Q+ + +        H   L++++G N
Sbjct: 71  GWRGPVLLLEGCFEARDLELCSRLNLWHVVHHDDQIGWLAA-HKTHQPHRVFLKMNSGMN 129

Query: 134 RLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDPSSHVNSV--QLERFRTLISHY 189
           RLG + Q AL       N   ++ ++SL+ +H + AD P    + +  Q+ RF       
Sbjct: 130 RLGFTPQ-ALRSAWVRLNALPQVDEISLM-THFSDADSPRPGADGIAAQVARFVEATHDL 187

Query: 190 KGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINKSHP--------MQTVVTA 238
            G E SL++S+ IL             R GI  YG +      HP        ++  +T 
Sbjct: 188 PG-ERSLSNSAAILRHCERAEVRADWVRSGILSYGSS----PDHPQHDIGHWNLRPAMTL 242

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +R+I  ++  AG+ V YG +    +   I + A GYADGYP    G     +P      
Sbjct: 243 RSRLIATQQLQAGDSVGYGSRFVAQQPMRIGIVACGYADGYPRHAPGDTGNATPV----- 297

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--GPD---IKLDDVALASGTT 353
              + G     +G+++MDM   D+++  +  VG  + ++  GP    + +D VA A+GT 
Sbjct: 298 --LVDGLRTHTVGRVSMDMLAVDLSELPAAGVGSEVTLWGHGPHGSLLPIDAVAQAAGTI 355

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 356 GYELMCALAQR 366


>gi|261409040|ref|YP_003245281.1| alanine racemase [Paenibacillus sp. Y412MC10]
 gi|261285503|gb|ACX67474.1| alanine racemase [Paenibacillus sp. Y412MC10]
          Length = 395

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 176/381 (46%), Gaps = 34/381 (8%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  L+ N+++   AL  + +  A VK NAYG G  ++A  L   G     V  ++E 
Sbjct: 11  EINLDHLRANYNAFREALPDHMKLLACVKANAYGHGAVEVARELQQLGAAYLSVAFLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA-- 125
           ++LR       I VL    P    I ++ ++ I + SS  ++    K +      P    
Sbjct: 71  IELRQGGISVPILVLGYTPPEAVGIAYEYDVTITLFSS--EVLQAIKALPVKPEKPLKVH 128

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++D+G  RLGL   ++A+ F   +F+     +  + +H A AD+ +      Q  RF+ 
Sbjct: 129 IKIDSGMGRLGLLPGEDAISFIEEAFSLPQVVVEGMFTHFARADEENKDYTLGQYRRFQG 188

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN-KSHPMQTVV 236
           +    +  +  +      +S+  +  P   + + R GI LYG   +D++N K+  ++ V+
Sbjct: 189 VADALRDKDYHIPIIHTGNSAAAIDTPELSYNMVRVGIGLYGLYPSDEVNRKTVSLRPVM 248

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T + +++ ++       +SYG +    ++  I    IGYADG+   LSG           
Sbjct: 249 TLKTKLVYVKNLPPHSGISYGTKYVTEQEERIGTLPIGYADGFSRMLSG----------- 297

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD----IKLDDVAL 348
             +  I+G  VP++G I MD  M  +     ++  I+ G+ + + G      I  D++A 
Sbjct: 298 KAEVLIRGRRVPVVGNICMDQCMVSLKSFAEEAEQIKAGEEVVLIGQQSGECITADELAA 357

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT +Y+++  I  R  + Y
Sbjct: 358 KLGTIHYEVVCMIAHRVPRLY 378


>gi|56962581|ref|YP_174307.1| alanine racemase [Bacillus clausii KSM-K16]
 gi|56908819|dbj|BAD63346.1| alanine racemase [Bacillus clausii KSM-K16]
          Length = 410

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 165/382 (43%), Gaps = 36/382 (9%)

Query: 9   LKIDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +++DL A+ +N  S+     +   N    AVVK NAYG G   +A     AG     V  
Sbjct: 14  VEVDLNAISSNVSSLARFYKSQGHNVAIMAVVKANAYGHGAIAVAKEALAAGATFLGVAL 73

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E ++LR    QA I VL    P   ++     +   +     L   ++ ++   + P 
Sbjct: 74  LDEALELRKAGIQAPILVLGKTRPENAELARSEGISVTVFEQEWLEEATRFLAKSPNDPL 133

Query: 125 ALQV--DTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            + V  DTG  RLG   Q+ ++ T       +K+G +  + +H A AD+        Q E
Sbjct: 134 RIHVKMDTGMGRLG---QQTVENTMAVVCAAQKIGVVEGLFTHFATADELDHTYYRKQQE 190

Query: 181 RFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233
           RF   +   +    S+      +S+  +  P   + + R GIS+YG T   +I ++ P +
Sbjct: 191 RFAACVDKLEEANVSIPFIHTGNSAASMRYPGDMYNMVRFGISMYGLTPSVEIKQALPFK 250

Query: 234 TV--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            +  ++ + + +  +    G+ VSYG   +    + IA   IGYADG+    S       
Sbjct: 251 LIPALSLKTKTVFTKLIQKGDAVSYGATYQAEAPTWIATLPIGYADGWARQNST------ 304

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                GG   + G      G+I MD  M ++++   +  G  + + G D    I+LDDVA
Sbjct: 305 ----KGGYALVNGQKARFAGRICMDQCMIELSE--PVPNGTTVTLVGKDGQEQIELDDVA 358

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY+    +  R  + Y
Sbjct: 359 KRLDTINYEAACMLNPRLPRIY 380


>gi|317012750|gb|ADU83358.1| alanine racemase [Helicobacter pylori Lithuania75]
          Length = 377

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 182/386 (47%), Gaps = 42/386 (10%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASETFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR + P+  I +L G  P     ++ D +L  ++ S+ Q   +S++ +         
Sbjct: 68  ALELRSHFPKTPILIL-GYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-----QLSLIISHLACADDPSSHVNSVQLE 180
           L++DTG +RLGL      +F      KK+      ++  I +HL+ AD         Q++
Sbjct: 127 LKIDTGMHRLGLE----PNFKSIETIKKIRVLKGLEVEGIFTHLSNADAKIKTHAKNQMK 182

Query: 181 RFRTLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKS 229
            F   +     + IE       +S+GIL       N    L RPGI LYG   ++++ +S
Sbjct: 183 AFNAFLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKES 242

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L 
Sbjct: 243 CPTILKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALG 299

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD- 345
           +    +        I   + P++GK+ MD     + +++  + GD + +FG    K +D 
Sbjct: 300 NRIQVA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDA 350

Query: 346 --VALASGTTNYDLLVRIGTRYAKFY 369
             +A    T  Y+ +  +  R  + Y
Sbjct: 351 SEIAALLNTIAYETISTLSKRLERVY 376


>gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
 gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
          Length = 813

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 170/380 (44%), Gaps = 40/380 (10%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           + +I+L A+ +N   + + L+ +    A+VK  AYG     +A  L   G++   V+ ++
Sbjct: 447 QCRINLAAIASNIKQIRSRLTPHTEIMAMVKATAYGTQDALMAKFLKTEGIRRLGVSYID 506

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSHPY 124
           EG+ LR       IFVL       EK +     I V    ++ Q+   S     G     
Sbjct: 507 EGISLRKEGVDQDIFVLNAAPYEIEKAVSWQFEIAVNDKETIDQIGRMSS--ERGTITRV 564

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L ++TG +RLG   +EAL            +L  +++H AC+D+P    ++  LE+ R 
Sbjct: 565 HLHINTGMSRLGCRPEEALPLARIIQAHPHLKLEGVMTHFACSDNPDE--DTFTLEQSRI 622

Query: 185 LISHYKGIEAS-------LASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPMQTV- 235
                + IE          A +S   L  ++  + + R G++LYG         P  T+ 
Sbjct: 623 FDHSIEAIEQEGISIPFRHACNSAAALRLHFPQYNIVRIGMALYGLC-------PGGTLA 675

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           ++  +RI+ I   + GE +SYG    + R+   IAV  IGY DG  L  S          
Sbjct: 676 LSLHSRIVGINHCIKGETISYGRSYTVQREREKIAVIPIGYYDGLHLNYSS--------- 726

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALA 349
              GK  I G   PI+G+I MD  M DIT      +GD + IFG D     +  +++A  
Sbjct: 727 --KGKVMIHGAEAPIVGRICMDYMMVDITHIPDACIGDPVLIFGEDAEGNVLSPNELAEQ 784

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             ++ Y+L+  +G R  + +
Sbjct: 785 GNSSVYELISCLGPRIQRVF 804


>gi|229096607|ref|ZP_04227578.1| Alanine racemase [Bacillus cereus Rock3-29]
 gi|229115582|ref|ZP_04244988.1| Alanine racemase [Bacillus cereus Rock1-3]
 gi|228667995|gb|EEL23431.1| Alanine racemase [Bacillus cereus Rock1-3]
 gi|228686813|gb|EEL40720.1| Alanine racemase [Bacillus cereus Rock3-29]
          Length = 408

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 154/344 (44%), Gaps = 28/344 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +   A  A VK N YG G  ++A A   AGV    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKHVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E ++LR       I +L    +   +  I +D  ++  +  +  L   +++ +  + +  
Sbjct: 88  EAIELREAGITVPILILGYTSVAAAESAIQYD--VMMTVYRIEDLQGINEI-AQRLQNKA 144

Query: 125 ALQV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            +QV  DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F
Sbjct: 145 RIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLF 204

Query: 183 RTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
              ++    +   +     ++S+G +   N    + R GI +YG        H    +Q 
Sbjct: 205 EKAVNTANELGMQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTVVSLQP 264

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ ++++  ++ A     VSYG     T +  IA   IGYADGY   LS          
Sbjct: 265 ALSLKSKVAHVKHATKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN--------- 315

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
              G   I G  VP++G++ MD  M D+T ++ ++VGD +  +G
Sbjct: 316 --KGYALINGVRVPVIGRVCMDQLMLDVTKAMPVQVGDDVVFYG 357


>gi|169349572|ref|ZP_02866510.1| hypothetical protein CLOSPI_00299 [Clostridium spiroforme DSM 1552]
 gi|169293647|gb|EDS75780.1| hypothetical protein CLOSPI_00299 [Clostridium spiroforme DSM 1552]
          Length = 369

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 172/367 (46%), Gaps = 30/367 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGV 69
           I+L  LK N  ++          AV+K +AYG G +++A  + +   ++ F V +++E +
Sbjct: 23  INLKYLKENIETIYKRFKRP-LMAVIKADAYGHGYKEVASYIKDLEYIEMFAVATLQEAI 81

Query: 70  KLRLYTPQARIFVLYGIHPGQEKI----IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +LR       I +L  +   +E+I     +D +L     ++  L +   L +   + P  
Sbjct: 82  ELRELGITKGILILGAVPTTKEEIELAISYDISL-----TMISLEYMYHLQTLISNKPLK 136

Query: 126 LQV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERF 182
           + +  DTG  R+GL+ ++ L+    + +++   L  I +H A AD + ++ V   QL  F
Sbjct: 137 IHIKLDTGMQRIGLTNKKELEEMLQTIDRRKFILEGIFTHYATADGEEAAFVKQQQL--F 194

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
             L+  ++       +S+ +    +    L R GI +YG     N+S   + V++   R+
Sbjct: 195 YKLVGQHEFKYIHCCNSAAMAYHQDNKSNLGRIGIVMYGIDPAGNESDYYKQVMSLFTRV 254

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
            +++K  AG  V YG      +D  +A   IGYADG       +       V++ GK F 
Sbjct: 255 SMVKKIKAGSRVGYGLTYTAKQDEYLATLPIGYADGI------IRKNQGRRVYINGKYF- 307

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
                 I+G++ MD  M  + +  S++VGD ++IFG  I L  +A    T  Y+++  I 
Sbjct: 308 -----EIVGRVCMDQMMVRVDE--SVKVGDKVEIFGDHISLASMAKDLDTIPYEIICLIS 360

Query: 363 TRYAKFY 369
            R  + Y
Sbjct: 361 KRVERIY 367


>gi|300932943|ref|ZP_07148199.1| hypothetical protein CresD4_02686 [Corynebacterium resistens DSM
           45100]
          Length = 559

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 164/361 (45%), Gaps = 56/361 (15%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+A+++N       + +A   AVVK +AY  G   +A A   +G     V ++ E + 
Sbjct: 18  IDLSAVRSNVSLFADAAPSAEVMAVVKADAYNHGAFSVARACLESGATQLGVATIGEALS 77

Query: 71  LRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLM--------SCG 119
           LR     A I     I PG++    I  D  +      VP L     L+        S  
Sbjct: 78  LRTAGITAPITAWMWI-PGEDLSRAIQQDITI-----GVPSLAHAEALVELVDTLEQSDS 131

Query: 120 VSHPYA--LQVDTGFNRLGLS------LQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
            S P A  L  DTG +R G++      + E +     SF+     +  ++SHLA ADD +
Sbjct: 132 NSTPIAISLMADTGLSRSGITPDQWATVVELIAKYSASFD-----VRGVMSHLASADDSA 186

Query: 172 SHV-NSVQLERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
                 VQ  RF+  I      GI+     +A++   L  P+ H Q+ RPG+ +YG  D 
Sbjct: 187 RAAFTDVQNRRFQRAIEICREHGIDPRTNHIANTPAALTRPDLHHQMVRPGVGIYG-IDP 245

Query: 226 I-----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           +       +  ++  +T  A++I  +   AGE VSYGG    TRD+  AV A GYADG P
Sbjct: 246 VVGGSGGNAGQLRPAITFRAKVITTKTIRAGESVSYGGTWTATRDTRTAVVAAGYADGVP 305

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS---LSIEVGDYIQIF 337
              SG        V +GGK      + P +G++ MD  + ++ DS     ++ GD+  IF
Sbjct: 306 RAASG-----KFHVGIGGK------LYPQIGRVCMDQIVVNLGDSEEPTDVKPGDWATIF 354

Query: 338 G 338
           G
Sbjct: 355 G 355


>gi|210135131|ref|YP_002301570.1| alanine racemase [Helicobacter pylori P12]
 gi|226711046|sp|B6JMG2|ALR_HELP2 RecName: Full=Alanine racemase
 gi|210133099|gb|ACJ08090.1| alanine racemase [Helicobacter pylori P12]
          Length = 377

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 182/386 (47%), Gaps = 42/386 (10%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR + P+  I +L G  P     ++ D +L  ++ S+ Q   +S++ +         
Sbjct: 68  ALELRSHFPKTPILIL-GYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-----QLSLIISHLACADDPSSHVNSVQLE 180
           L++DTG +RLGL      +F      KK+      ++  I +HL+ AD         Q++
Sbjct: 127 LKIDTGMHRLGLE----PNFKSIETIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMK 182

Query: 181 RFRTLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKS 229
            F   +     + IE       +S+GIL       N    L RPGI LYG   ++++ +S
Sbjct: 183 AFNAFLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNEMKES 242

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L 
Sbjct: 243 CPTILKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALG 299

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD- 345
           +    +        I   + P++GK+ MD     + +++  + GD + +FG    K +D 
Sbjct: 300 NRIQVA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDA 350

Query: 346 --VALASGTTNYDLLVRIGTRYAKFY 369
             +A    T  Y+ +  +  R  + Y
Sbjct: 351 SEIAALLNTIPYETISTLSKRLERVY 376


>gi|254552529|ref|ZP_05142976.1| alanine racemase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 277

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 26/284 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E + 
Sbjct: 2   VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 61

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIP----VISSVPQL-TFYSKLMSCGVSH 122
           LR   +  P     VL  +HP    I F   L+      +SS+ QL      +   G + 
Sbjct: 62  LRADGITAP-----VLAWLHP--PGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTA 114

Query: 123 PYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              ++VDTG NR G+   +    L     +  +   +L  ++SH+  AD P   +N VQ 
Sbjct: 115 TVTVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQA 174

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +RF   ++  +  G+    A L++SS  +  P+  F L RPGI++Y G   +     M  
Sbjct: 175 QRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVY-GLSPVPALGDMGL 233

Query: 235 V--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           V  +T +  + L++   AGE VSYG      RD+ +A+  IGYA
Sbjct: 234 VPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYA 277


>gi|308062256|gb|ADO04144.1| alanine racemase [Helicobacter pylori Cuz20]
          Length = 377

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 183/383 (47%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSTVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR Y  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSYFSKTPILIL-GYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD +  +H  + Q++ F 
Sbjct: 127 LKIDTGMHRLGLEPNFKSIETIKKIRALKGLEIEGIFTHLSNADSNIKTHAKN-QMKAFN 185

Query: 184 TLISHYKGIEASLA-----SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP- 231
             +      +         +S+GIL       N    L RPGI LYG   ++ + +S P 
Sbjct: 186 AFLEQLSNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKESCPT 245

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +  
Sbjct: 246 ILKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRI 302

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---V 346
             +        I   + P++GK+ MD     + +++  + GD + +FG    K +D   +
Sbjct: 303 QVA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEI 353

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T  Y+ +  +  R  + Y
Sbjct: 354 ATLLNTIPYETISTLSKRLERVY 376


>gi|294814508|ref|ZP_06773151.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064]
 gi|326442897|ref|ZP_08217631.1| alanine racemase [Streptomyces clavuligerus ATCC 27064]
 gi|294327107|gb|EFG08750.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064]
          Length = 396

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 164/378 (43%), Gaps = 29/378 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N  ++ A +  A   AVVK + YG G    A A   AG +     + +E
Sbjct: 11  RAEIDLAALRANVRALRARAPRAGLMAVVKADGYGHGAVPCARAAIAAGAEWIGTATPDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR      RI        G  +   +  L   +S +  L    +   + G +    L
Sbjct: 71  ALALRAAGVPGRIMCWLWTPGGPWREGIEAGLDMSVSGLWALDEVVAAARATGRTARIQL 130

Query: 127 QVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G         +     +  +   +++ + SH ACAD+P     + QL  FR
Sbjct: 131 KADTGLGRNGCQPADWAALVAAARAAEAEGAVRITGLWSHFACADEPGHPSIAHQLTAFR 190

Query: 184 TLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQT 234
            +++H +   A      +A+S   L  P  HF L RPGI++YG +       ++   ++ 
Sbjct: 191 EMVAHAEKEGADPEVRHIANSPATLTLPEAHFDLVRPGIAMYGVSPSPEIGTHQELGLRP 250

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  A + L+++   G  VSYG        + + +  +GYADG P   SG         
Sbjct: 251 VMTLAASVALVKRVPEGHGVSYGHHYTTPGATTLGLIPVGYADGVPRHASGR-------- 302

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVALAS 350
              G   + G +    G+I MD  + D+     I  G    +FGP  +     +D A A+
Sbjct: 303 ---GPVLVGGRVRTAAGRIAMDQFVVDLGGQ-EIPEGSEAVLFGPGTRGEPSAEDWARAA 358

Query: 351 GTTNYDLLVRIGTRYAKF 368
           GT  Y+++ RIGTR  + 
Sbjct: 359 GTIAYEIVTRIGTRVPRV 376


>gi|290981363|ref|XP_002673400.1| tentative alanine racemase [Naegleria gruberi]
 gi|284086983|gb|EFC40656.1| tentative alanine racemase [Naegleria gruberi]
          Length = 421

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 168/372 (45%), Gaps = 51/372 (13%)

Query: 35  VVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEEGVKLR--LYTPQARIFVL---YGIHP 88
           VVK NAYG G   +   LYN   ++ F V  V+EGVK+R  L    A I +L   Y I P
Sbjct: 62  VVKANAYGHGDTPVVRELYNELSIKQFAVNRVKEGVKIRSNLSKENANIEILVLGYAI-P 120

Query: 89  GQEKIIFDTNLIPVISSVPQL--TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF- 145
            + K     NL P IS    +  T + +      +    L+VDTG  R G   ++  +F 
Sbjct: 121 EEVKECVTYNLTPTISGSRLIVETLFRECEKQDKTINVHLKVDTGMGRFGAHPEKLENFL 180

Query: 146 ---THNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERF---RTLISHY------- 189
              T N    +N+   +++ + +H + AD+ S      Q  +F   + +I ++       
Sbjct: 181 RWFTINPMKLYNRI--KITGVFTHFSSADEMSPDYTREQFYKFMEVKKMIENHQVSRVFE 238

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-----MQTVVTAEARIIL 244
           K +     +S+G L  P  H  + RPGIS+YG +   ++  P     ++  +T  + +  
Sbjct: 239 KPLTYHCCNSAGTLFFPEMHMDMIRPGISIYGLSPSNDRDDPRLPFKLKPALTVVSHLGR 298

Query: 245 IRKALAGELVSYGGQKKLTR-DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           ++K   G  VSYG    +   D  +A+  +GY DGY    +G                I+
Sbjct: 299 VQKFPKGSPVSYGNTYTVAEDDETLALVPVGYGDGYKRINTG-----------KAHVLIR 347

Query: 304 GYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGP----DIKLDDVALASGTTNYDL 357
           G   PI+G+I MD  +  I+ ++   +++ D + + G     ++  + V+  S T NY++
Sbjct: 348 GEECPIVGRICMDQFVVKISPTVVDRVKINDEVVLIGEQDGKEVTCEMVSHWSNTINYEV 407

Query: 358 LVRIGTRYAKFY 369
           +  +  R  + Y
Sbjct: 408 VTALLPRLKRVY 419


>gi|295110109|emb|CBL24062.1| alanine racemase [Ruminococcus obeum A2-162]
          Length = 388

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 172/392 (43%), Gaps = 45/392 (11%)

Query: 4   NEFLRLK--IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQD 59
            +F R+K  + L A+ +N+  M   ++   +  AV+K + YG G E IA  + +   +  
Sbjct: 2   KKFDRVKAVVSLDAIAHNFEEMKKNIAEGTKIVAVIKADGYGHGAEAIARLIEDYEYIWG 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           +   + EE ++LR       I +L         I+F+     +I+   ++T     M+  
Sbjct: 62  YATATPEEALQLRDAGIDKPILIL--------GIVFEEYYKELIAHEVRMTVCEYEMAAA 113

Query: 120 VSHPYALQ---------VDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +S     Q         +DTG +R+G + + E+++           ++  + +H A AD+
Sbjct: 114 LSEEAVRQGRQVHIHIGLDTGMSRIGFADVPESVETIKKIAALPNVEIEGMFTHFARADE 173

Query: 170 PSSHVNSVQLERFR--TLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTD 224
                   QL R+   T +    G+E  +   ++S+GI+  P  +    R GI++YG   
Sbjct: 174 TDRSPAITQLNRYLAFTELLEKAGVEIPMKHCSNSAGIIRVPEANLNAVRAGITIYGIYP 233

Query: 225 KINKSHPMQTVVTA---EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                  +  ++ A   ++ +  ++   AG  +SYGG     +D  +A   +GYADGYP 
Sbjct: 234 SNEVERDIVKLIPAMELKSHVSYVKDLPAGTPISYGGTFASEKDLRVATIPVGYADGYPR 293

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
           +LS             G   I G   PI+G++ MD  M D+TD   ++ GD + + G D 
Sbjct: 294 SLSN-----------KGWVLIHGQKAPIIGRVCMDQFMVDVTDIPEVKHGDEVTLIGKDG 342

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              I ++     SG  +Y+    I  R  + Y
Sbjct: 343 EEFISIETFGDLSGRFSYEFACDISKRVPRVY 374


>gi|225869873|ref|YP_002745820.1| alanine racemase [Streptococcus equi subsp. equi 4047]
 gi|254802387|sp|C0M6I5|ALR_STRE4 RecName: Full=Alanine racemase
 gi|225699277|emb|CAW92611.1| alanine racemase [Streptococcus equi subsp. equi 4047]
          Length = 366

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 169/373 (45%), Gaps = 31/373 (8%)

Query: 10  KIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++DL A++ N  H    +    RT AVVK NAYG G   ++ A+ +  V  + V++++E 
Sbjct: 12  RVDLEAIRANIDHIHQHIPKKVRTYAVVKANAYGHGAVAVSKAVEDQ-VDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
           ++LR       I +L  I   + ++     L   ++S+  L   +K  S   S  +  ++
Sbjct: 71  LELRQAGIDKEILILGVILASELQLAIKHQLTITVASLEWLEL-AKKESVDFSQLHVHVK 129

Query: 128 VDTGFNRLGL-SLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           VD+G  R+G+ SL EA      S    +G QL  I +H A ADD    +   QL  F+ L
Sbjct: 130 VDSGMGRIGVRSLAEANQLI--SILSDMGVQLDGIFTHFATADDSDHAMFDKQLTFFKQL 187

Query: 186 ISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEA 240
           +       A +  ++S+  L      F   R GI +YG     + ++   P++  ++ E+
Sbjct: 188 VEQLDKRPALVHASNSATSLWHSETIFNAIRLGIVIYGLNPSGNSLSLPCPLKEALSLES 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R++ +++  AG+ V YG          +    IGYADG+   + G             K 
Sbjct: 248 RLVHVKQIQAGDSVGYGASYVAAEPEYVGTLPIGYADGWTRNMQGF------------KV 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            ++G    I+G+++MD     +  +  I  G  + + G      I   DVA   GT NY+
Sbjct: 296 LVEGEFCDIIGRVSMDQLTIRLPKAYPI--GTKVTLIGQQGKQVITATDVADYRGTINYE 353

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 354 VLCLLSDRIPREY 366


>gi|51598420|ref|YP_072608.1| alanine racemase [Borrelia garinii PBi]
 gi|51572991|gb|AAU07016.1| alanine racemase [Borrelia garinii PBi]
 gi|146743654|gb|ABQ43058.1| alanine racemase [Borrelia garinii PBi]
          Length = 366

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 155/352 (44%), Gaps = 28/352 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I        +  F ++++E+   L+      +I +   + 
Sbjct: 26  GEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 85

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGLSLQEALD 144
             + K +    L+P ++    L    K   C          L++D G NR G+ +  AL+
Sbjct: 86  KKEIKNLIKLELLPFVADFEYLFLIEK--ECAFQKKKIKVHLKIDIGMNRYGIRIDSALE 143

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N +  +L  I SHL   ++  +     Q+E+F  ++     K I       S+S
Sbjct: 144 IATYIQNSQFLELEGICSHLPATENFKT--TQKQIEKFLLVLETLKQKNINPKFIHISNS 201

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKI-NKSHPM--QTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    + NK   +  + V+   +++I I+    GE +S
Sbjct: 202 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKTTLNFKPVLNLFSKVIFIKNVKKGEKIS 261

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +      ++   FL     I      I GK+ M
Sbjct: 262 YSGIFQAKEDMKIGIIPIGYFDGIPQNI------NNNFYFL-----INNQKCKIKGKVCM 310

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++T+ +I  +L + +G  ++I    + +D ++  S  ++Y+LL  IG +Y K
Sbjct: 311 NLTIVEIPKNLKVRIGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIG-KYEK 361


>gi|257873842|ref|ZP_05653495.1| serine/alanine racemase [Enterococcus casseliflavus EC10]
 gi|257808006|gb|EEV36828.1| serine/alanine racemase [Enterococcus casseliflavus EC10]
          Length = 700

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 165/366 (45%), Gaps = 37/366 (10%)

Query: 15  ALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDFFAVATLEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  I S         L    +     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAH---GHALAQTSIPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNS-VQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D  D +S + +  Q+  F  L++   
Sbjct: 467 RLGVA--PDLETVTGLYALPSLKITGIFSHLGSSDQLDTASILRTQAQITCFDDLLA--- 521

Query: 191 GIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTA 238
           G+ A         L SS GIL  P  H+   RPGI L G     N+       +Q ++T 
Sbjct: 522 GLSARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTL 581

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A ++  +   AGE + YG      R + I + +IGY DG P  LS    + S       
Sbjct: 582 KALLVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQGFQLS------- 634

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
               +G ++P +G + MDM + D+TD   + V   +++        D A    T   +L+
Sbjct: 635 ---YQGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTTADQA---QTITNELI 688

Query: 359 VRIGTR 364
            R+G+R
Sbjct: 689 SRLGSR 694


>gi|322377447|ref|ZP_08051938.1| alanine racemase [Streptococcus sp. M334]
 gi|321281647|gb|EFX58656.1| alanine racemase [Streptococcus sp. M334]
          Length = 367

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 171/375 (45%), Gaps = 37/375 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPEGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-----CGVSHPY 124
           +LR      RI +L G+   + + +       +  +V  L +   L+S      G++   
Sbjct: 72  ELRQAGLSKRILIL-GV--SEIEAVSLAKEYDITLTVAGLEWIQALLSSEEDLAGLT--V 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++D+G  R+G       +   +   +   ++  I +H A AD+ S    + QLERF+T
Sbjct: 127 HLKIDSGMGRIGFREASEAEQAQDLLQQHGARIEGIFTHFATADEESDDYFNEQLERFKT 186

Query: 185 LISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVV 236
           +++  KG+ E   AS+S   L   +H    F   R G ++YG     + +N  + ++  +
Sbjct: 187 ILASMKGLPELVHASNSATTL---WHAETIFNAVRMGDAMYGLNPSGEILNLPYDLKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +          V L
Sbjct: 244 TLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF-------VVL 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
                + G   PI+G+++MD     +     L  +V       G +I    VA   GT N
Sbjct: 297 -----VDGQACPIVGRVSMDQITIHLPKLYPLGTKVTLIGSNGGKEITATQVATYRGTIN 351

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  +  R  + Y
Sbjct: 352 YEVVCLLSDRIPREY 366


>gi|257867513|ref|ZP_05647166.1| serine/alanine racemase [Enterococcus casseliflavus EC30]
 gi|257801569|gb|EEV30499.1| serine/alanine racemase [Enterococcus casseliflavus EC30]
          Length = 700

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 165/366 (45%), Gaps = 37/366 (10%)

Query: 15  ALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDFFAVATLEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  I S         L    +     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAH---GHALAQTSIPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNS-VQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D  D +S + +  Q+  F  L++   
Sbjct: 467 RLGVA--PDLETVTGLYALPSLKITGIFSHLGSSDQLDTASILRTQAQITCFDDLLA--- 521

Query: 191 GIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTA 238
           G+ A         L SS GIL  P  H+   RPGI L G     N+       +Q ++T 
Sbjct: 522 GLSARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTL 581

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A ++  +   AGE + YG      R + I + +IGY DG P  LS    + S       
Sbjct: 582 KALLVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQGFQLS------- 634

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
               +G ++P +G + MDM + D+TD   + V   +++        D A    T   +L+
Sbjct: 635 ---YQGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTTADQA---QTITNELI 688

Query: 359 VRIGTR 364
            R+G+R
Sbjct: 689 SRLGSR 694


>gi|317054962|ref|YP_004103429.1| alanine racemase [Ruminococcus albus 7]
 gi|315447231|gb|ADU20795.1| alanine racemase [Ruminococcus albus 7]
          Length = 373

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 173/388 (44%), Gaps = 48/388 (12%)

Query: 6   FLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDF 60
           FLR    +IDL+A+  N       L  +     VVK + YG   E I P L    GV+ F
Sbjct: 3   FLRRCWAEIDLSAVDYNVCEYKKLLPQDTELMCVVKASCYGHSDELIVPRLQQVHGVRYF 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDTNLIPVISSVPQLTFYSKLMS 117
            V+++ EG++LR       I +L G  P +   E + +D     +I +  +L  Y++ +S
Sbjct: 63  AVSNILEGIRLREIGINGDILIL-GYTPPECAAELVKYD-----IIQACTELC-YAQELS 115

Query: 118 CGVSHPYALQ--VDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSL--IISHLACAD-- 168
              +    L   VDTG  R+G+   + ++A +    S    L  +SL  I +H + AD  
Sbjct: 116 ANANGTVRLHGAVDTGMTRIGVHGTAEEQADELAKVS---ALPNISLEGIFTHFSSADGI 172

Query: 169 -DPSSHVNSVQLERF---RTLISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYG 221
            D       +Q ERF   R L+   KGI    A + +S+G   G      L R GI LYG
Sbjct: 173 DDADEKYTQMQSERFFRVRDLLKE-KGIRLKHAHIKNSAGGAYGYGDESTLARLGIILYG 231

Query: 222 GTDKINKSHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
                 KS P   + V+T +A +  ++    G  VSYG      R   +A    GYADGY
Sbjct: 232 LYPDPAKSLPFVPKPVMTLKAVVSQVKWIDEGTAVSYGRTFVSDRRMKLATVTAGYADGY 291

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339
           P  LS             G+  I+G    I G++ MD  M D+TD      GD + +   
Sbjct: 292 PRALSN-----------KGEVIIRGKKCRICGRVCMDQFMCDVTDIPDAAPGDEVILMNA 340

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAK 367
           +I  D +A  +GT  Y++   I +R  +
Sbjct: 341 EINADVIAALTGTIGYEITCDITSRVPR 368


>gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
 gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 162/377 (42%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N  H    L    +   +VK +AYG G  +IA  L    V    V   +E
Sbjct: 485 LEVNLGAMIANLNHYRGKLKPETKMVCMVKASAYGAGSYEIARTLQEHHVDYLAVAVADE 544

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYSKLMSCGVSH-P 123
           G  LR     A I ++   +P     K +FD  L P + S   L     +    G+++ P
Sbjct: 545 GSDLRKAGITASIIIM---NPEMTAFKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFP 601

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD----DPSSHVNSVQL 179
             +++DTG +RLG + ++          +       + SH   +D    D  +       
Sbjct: 602 IHVKLDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDAQQFDAFTRKQIETF 661

Query: 180 ERFRTLISH---YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           E+   L+     YK I   + +S+GI   P   F + R GI LYG    I+ S  M  V 
Sbjct: 662 EKASMLLQEAFPYK-ILRHICNSAGIERFPGAQFDMVRLGIGLYG-ISPIDNS-IMHNVS 718

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y  +  LTR S IA   IGYADG    L             
Sbjct: 719 TLKTTILQIRDVPEEDTVGYSRKGHLTRPSRIAAIPIGYADGLNRHL------------- 765

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G G     + G   P +G I MD+ M D+TD +  + GD ++IFG  + +  ++   GT
Sbjct: 766 -GNGHAYCLVNGQRAPYVGNICMDVCMIDVTD-IDCKEGDSVEIFGDHLPITVLSDVLGT 823

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  + TR  + Y
Sbjct: 824 IPYEVLTNVSTRVKRVY 840


>gi|332295096|ref|YP_004437019.1| Alanine racemase [Thermodesulfobium narugense DSM 14796]
 gi|332178199|gb|AEE13888.1| Alanine racemase [Thermodesulfobium narugense DSM 14796]
          Length = 352

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 159/364 (43%), Gaps = 18/364 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+IDL A+ +N+  +      +    V+K NAYG+G   +A AL +       +  +EE 
Sbjct: 5   LEIDLDAILSNYKIIKEYV-KSDLIPVIKSNAYGMGLIPVANALKDVA-NLIAIGDIEEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
             LR    +  + ++  I   +E ++  + N+   I S    +F S +    G +    +
Sbjct: 63  QTLRRSGFEGNLLLIVPIFSREEAELCVEYNVFTAIDSFDMASFLSDIAKKSGKTVGVHV 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VD G +R G+  +E  +F          QL  I SH        + +   QL  F  + 
Sbjct: 123 KVDIGMHRFGVKPEELDNFIKQISYLPNIQLMGIFSHFPLG---LNLITEEQLILFDRIS 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             YK +   L +S   +        + R G+ +YG      KS  ++ VV  +A I+ I 
Sbjct: 180 EKYKNLIVHLPNSQNTVENFESLKFIPRCGLLIYGAMPSDVKSFVLKNVVKLKANIVKIH 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG+  SYG      +DS IAV +IGYADG    LS   S             +KG +
Sbjct: 240 DISAGQSWSYGYSYTAHKDSKIAVISIGYADGLKRALSNKWSAK-----------VKGSI 288

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P+ G I M+ +  DIT   ++ VGD   +   D+K++D+A    T  +++LV       
Sbjct: 289 CPLRGTINMNFSFVDITGVDNVRVGDEAILLDEDLKIEDMAKTIDTVPHEILVSFRESMK 348

Query: 367 KFYT 370
           + Y 
Sbjct: 349 RIYV 352


>gi|111114981|ref|YP_709599.1| alanine racemase [Borrelia afzelii PKo]
 gi|216263804|ref|ZP_03435798.1| alanine racemase [Borrelia afzelii ACA-1]
 gi|110890255|gb|ABH01423.1| alanine racemase [Borrelia afzelii PKo]
 gi|146743656|gb|ABQ43059.1| alanine racemase [Borrelia afzelii PKo]
 gi|215979848|gb|EEC20670.1| alanine racemase [Borrelia afzelii ACA-1]
          Length = 366

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 152/347 (43%), Gaps = 27/347 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I        +  F ++++E+   L+      +I +   + 
Sbjct: 26  GEKEIVATLKGDAYGHGLINIFKFFKAKKINYFGLSNIEDAKTLKKIDKSTKILMYIKVD 85

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGLSLQEALD 144
             + K +    L+P ++    L    K   C +        L++D G NR G+ +  AL+
Sbjct: 86  KKEIKNLIKLELLPFVADFEYLFLIEK--ECALQKKKIKVHLKIDVGMNRYGIKIDSALE 143

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  + SHL   ++    +   Q+E+F   +     K I       S+S
Sbjct: 144 IATYIQNSKFLELEGVCSHLPTTEN--FKITQKQIEQFLFFLETLKQKNINPKFVHISNS 201

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKI-NKSHPM--QTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    + NK   +  + V+   ++++ I+    GE +S
Sbjct: 202 GHIINYKLNPQFNMVRPGLILYGYCPTLKNKKTTLNFKPVLNLFSKVVFIKNVKKGEKIS 261

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +      ++   FL     I      I GK+ M
Sbjct: 262 YSGTFQAKEDMKIGIIPIGYFDGIPQNI------NNNFYFL-----INNKKCKIRGKVCM 310

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           ++T+ +I   L +E G  ++I    + +++++  S  ++Y+LL  IG
Sbjct: 311 NLTIVEIPKDLKVETGSKVEIVSEKLSINEMSKFSKRSHYELLCNIG 357


>gi|319654677|ref|ZP_08008756.1| alanine racemase [Bacillus sp. 2_A_57_CT2]
 gi|317393593|gb|EFV74352.1| alanine racemase [Bacillus sp. 2_A_57_CT2]
          Length = 423

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 147/347 (42%), Gaps = 25/347 (7%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK N YG G   +A A   AG     V +++E + LR     A I V+    P     
Sbjct: 77  AVVKANGYGHGDAAVAEAALEAGASSLAVATLDEAMALRNKKIAAPILVMGASRPEHAGE 136

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK- 152
               N+   +     L+   + +  G      L+ DTG  RLG+  ++ L    +   K 
Sbjct: 137 ASAKNIALTVFQKEWLSQAYEYVEDGEVLNIHLKFDTGMGRLGIRSRDELAGIESVIKKD 196

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL--ASSSGILLGPNYHF 210
           K   L  + +H A AD   +     QL RF  + S  + +   +  ++S+  L  P  HF
Sbjct: 197 KRFMLEGVFTHFATADSLENAYFEKQLSRFEEMTSWLEILPKYIHTSNSAAGLRFPKAHF 256

Query: 211 QLTRPGISLYGGTD----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDS 266
              R GIS+YG       K +   P++   +    I+ ++K   GE VSYG   +   D 
Sbjct: 257 NAVRMGISMYGLAPSMEIKSDLPFPLKEAFSLHTSIVHVKKLHKGEKVSYGATYEAQEDE 316

Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
            IA   IGYADG+   L G +               +G  VPI+G++ MD  M  +   +
Sbjct: 317 WIATLPIGYADGWIRKLQGQEV------------LAEGLRVPIVGRVCMDQCMIKLPHEM 364

Query: 327 SIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              VG  + + G      I +D++A    T NY++   + +R  + Y
Sbjct: 365 P--VGTKVTLIGEQGEEKIPVDEIAEKLETINYEVTCMVSSRVPRIY 409


>gi|167756231|ref|ZP_02428358.1| hypothetical protein CLORAM_01761 [Clostridium ramosum DSM 1402]
 gi|237734175|ref|ZP_04564656.1| alanine racemase [Mollicutes bacterium D7]
 gi|167704223|gb|EDS18802.1| hypothetical protein CLORAM_01761 [Clostridium ramosum DSM 1402]
 gi|229382735|gb|EEO32826.1| alanine racemase [Coprobacillus sp. D7]
          Length = 357

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 21/340 (6%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
           AV+K +AYG G  ++A  + +    + F V ++ E ++LR       I +L  +   +E+
Sbjct: 33  AVIKADAYGHGYREVATYIKDIEYLEMFAVATLPEAIELRELGITKGILILGAVPTSKEE 92

Query: 93  IIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYALQV--DTGFNRLGLSLQEALDFTHNS 149
           I  D  +   IS ++  L +   L +     P  + +  DTG +R+GL+ +  LD   N+
Sbjct: 93  I--DLAIKYDISLTMISLDYMHHLETLIDQQPLKIHIKLDTGMHRIGLTSKAQLDEMLNT 150

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
            +     L  I +H A AD   +  +  Q E F  L++ +K       +S+ +    +  
Sbjct: 151 IDYNKFILEGIFTHYATADGEQAAFDQ-QRELFYDLVADHKFKYIHCCNSAAMAYHHDDR 209

Query: 210 FQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
             L R GI +YG     N++   + V++  +++ LI+K  AG+ V YG       D  +A
Sbjct: 210 SNLGRIGIIMYGIDPAGNETKEFKQVMSLYSKVALIKKIKAGDRVGYGLTYTADEDEYLA 269

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE 329
              IGYADG       +      +V++ GK F       I+G++ MD  M  + +  +I+
Sbjct: 270 TIPIGYADGL------IRKNQGRNVYINGKYF------EIVGRVCMDQIMVRVDE--TIK 315

Query: 330 VGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            GD ++IFG  I L  +A    T  Y+++  I  R  + Y
Sbjct: 316 EGDKVEIFGAHISLASMARELETIPYEIICLITKRVDRLY 355


>gi|325273199|ref|ZP_08139485.1| alanine racemase [Pseudomonas sp. TJI-51]
 gi|324101664|gb|EGB99224.1| alanine racemase [Pseudomonas sp. TJI-51]
          Length = 225

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 23/224 (10%)

Query: 147 HNSFNKKL--GQLSLII--SHLACADDPSSHVNSVQLERFRTLISHYKGI--EASLASSS 200
           H ++ + L  G+++ I+  SH A AD+  +   + Q+  F    +  +G+  E SL +S 
Sbjct: 6   HEAYQRLLASGKVARIVLMSHFARADELDADATAQQIAVFE---AARQGLAAECSLRNSP 62

Query: 201 GILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
           G+L  P       RPG+ LYG T       ++  +Q V+T ++R+I +R+  AG+ V YG
Sbjct: 63  GVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPVMTLQSRVISVRELPAGQPVGYG 122

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
            +    R + + V A+GYADGYP          +P+   G    + G   P++G+++MDM
Sbjct: 123 AKFVSPRPTRVGVVAMGYADGYP--------RQAPN---GTPVLVAGKRAPLIGRVSMDM 171

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
              D+TD     VG  ++++G  +   +VA  +GT  Y +   +
Sbjct: 172 LSIDLTDVPDATVGSPVELWGKQVLASEVAAQAGTIPYQIFCNL 215


>gi|291545833|emb|CBL18941.1| alanine racemase [Ruminococcus sp. SR1/5]
          Length = 389

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 177/390 (45%), Gaps = 37/390 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M   E ++  + L A+ +N+  M+  +    +  AV+K + YG G   IA  + +   + 
Sbjct: 1   MKKYERVKALVSLDAIAHNFEEMHKNVKEGTKIIAVIKADGYGHGARAIARLIQDYDYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MS 117
            F   + EE ++LR       + +L  +     + +   ++   IS +     Y+K    
Sbjct: 61  GFATATAEEALELRHAGITKPVLILGLVFEEYYEELAANDIRITISDLNTAAEYAKAGAR 120

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQL-SLII----SHLACADDPS 171
            G +    L +DTG  R+G +     D   N+   +K+ ++ +L+I    +H A AD+  
Sbjct: 121 IGKNVHIHLALDTGMTRIGYA-----DIPENAVKIEKISKIPNLVIEGMFTHFARADETD 175

Query: 172 SHVNSVQLERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTD 224
                VQL+R+         +G+   +   ++S+GI+  P  +  + R GI++YG   ++
Sbjct: 176 RSPALVQLDRYLRFAELLEKRGVHIPVRHCSNSAGIIRVPEANLNVVRAGITIYGIYPSE 235

Query: 225 KINKS-HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           ++ +    +   +  ++ +  ++    G  VSYGG     R + +A   +GYADGYP  L
Sbjct: 236 EVERDIVKLTPAMELKSHVSYVKNVERGTAVSYGGTFVTERFTRMATIPVGYADGYPRQL 295

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
           S             G   I+G   PILG++ MD  M D+TD   ++ GD + + G D   
Sbjct: 296 SN-----------KGWVLIRGKKAPILGRVCMDQFMVDVTDIPEVKAGDEVTLMGRDGEE 344

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I ++ +   SG  +Y+ +  I  R  + Y
Sbjct: 345 FISVETLGDLSGRFSYEFVCGISKRVPRVY 374


>gi|297192661|ref|ZP_06910059.1| alanine racemase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151457|gb|EFH31178.1| alanine racemase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 369

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 153/352 (43%), Gaps = 29/352 (8%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           VVK +AYG G    A A   AG       +  E + LR    ++R+        G  +  
Sbjct: 16  VVKSDAYGHGMVPCARAALAAGATWLGTATPHEALALRAAGVESRVMCWLWTPGGPWREG 75

Query: 95  FDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLS---LQEALDFTHNSF 150
            + +L   +S +  L   +      G      L+ DTG  R G       E +     + 
Sbjct: 76  IEADLDMSLSGMWALEEVTAAAKAAGRPARVQLKADTGLGRNGCQPADWPELVAAARTAE 135

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK--GIEAS---LASSSGILLG 205
           +  L +++ + SH ACAD+P     + QL  FR ++ H +  GI+     +A+S   L  
Sbjct: 136 DDGLVRVTGLWSHFACADEPGHPSIAAQLAVFRDMVDHAEKAGIDPEVRHMANSPATLTV 195

Query: 206 PNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKK 261
           P  HF L R GI++YG +       P    ++ V+T  A + L++   AG  VSYG    
Sbjct: 196 PESHFDLVRTGIAMYGISPAPELGTPADFGLRPVMTLAASVALVKHVPAGHGVSYGHHYV 255

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
              ++ + +  +GYADG P   SG            G   + G    + G++ MD  + D
Sbjct: 256 TDDETTLGLIPVGYADGIPRHASGK-----------GPVLVAGEWRRVAGRVAMDQFVVD 304

Query: 322 ITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  + ++  G    +FGP    +   +D A A+ T  Y+++ RIGTR  + +
Sbjct: 305 LGGT-TVPEGTEAILFGPGDRGEPTAEDWAQAADTIAYEIVTRIGTRVPRVH 355


>gi|257877592|ref|ZP_05657245.1| serine/alanine racemase [Enterococcus casseliflavus EC20]
 gi|257811758|gb|EEV40578.1| serine/alanine racemase [Enterococcus casseliflavus EC20]
          Length = 700

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 165/366 (45%), Gaps = 37/366 (10%)

Query: 15  ALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDFFAVATLEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  I S         L    +     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAH---GHALAQTSIPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNS-VQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D  D +S + +  Q+  F  L++   
Sbjct: 467 RLGVA--PDLETVTGLYALPSLKITGIFSHLGSSDQLDTASILRTQAQITCFDDLLA--- 521

Query: 191 GIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTA 238
           G+ A         L SS GIL  P  H+   RPGI L G     N+       +Q ++T 
Sbjct: 522 GLSARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTL 581

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A ++  +   AGE + YG      R + I + +IGY DG P  LS    + S       
Sbjct: 582 KALLVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGIPRALSNQGFQLS------- 634

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
               +G ++P +G + MDM + D+TD   + V   +++        D A    T   +L+
Sbjct: 635 ---YQGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTTADQA---QTITNELI 688

Query: 359 VRIGTR 364
            R+G+R
Sbjct: 689 SRLGSR 694


>gi|315660233|ref|ZP_07913088.1| alanine racemase [Staphylococcus lugdunensis M23590]
 gi|315494660|gb|EFU83000.1| alanine racemase [Staphylococcus lugdunensis M23590]
          Length = 399

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 172/390 (44%), Gaps = 46/390 (11%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ NN+     L  N     V+K N YGLG  +IA  L + G   
Sbjct: 19  SDKYYRNTYINVDLAAINNNYRQFTQLHDNKTVIPVIKANGYGLGSVQIAQYLVDHGASF 78

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI---PVISSVPQLTFYSKLM 116
           F V +++E ++LR++  +A+I +L G+ P     I D N      V  +VP  ++ S  +
Sbjct: 79  FAVATLDEAIELRMHGIKAQILIL-GVIP-----IEDINKAIQHRVAITVPSKSWLSSAI 132

Query: 117 SCGVSHPYA-----LQVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSLIISHLACADDP 170
                         +++DTG  RLG+  Q     T H     +      + +H ACAD+P
Sbjct: 133 KAINDDNEKRLWLHIKLDTGMGRLGIKNQAEYHQTIHLIEQHEHLVFEGVYTHFACADEP 192

Query: 171 SSHVNSVQLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYG----GT 223
                  Q + F+T ++     + + A   +S+G L+         R GISLYG      
Sbjct: 193 GDSAQQ-QYQCFKTWVTSTDMPRYVHAQ--NSAGALMIDADICNAVRLGISLYGYYPSEY 249

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
            K      +Q  V    +I+  ++   GE VSYG          I +  IGYADGY   +
Sbjct: 250 VKEETDIELQPSVELMTQIVQTKELQPGESVSYGSTYTAQSPIKIGIIPIGYADGYLRIM 309

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
            G         F+     +KG    ++G++ MD T+  I D + +E GD + +       
Sbjct: 310 QGH--------FVN----VKGQQCEVIGRVCMDQTIIKINDDI-VE-GDEVCVISKQQDS 355

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              +D +A    T NY++L  +G R  + Y
Sbjct: 356 IQSVDAIAKQQKTINYEVLCNLGRRLPRIY 385


>gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
 gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
          Length = 896

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 167/373 (44%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N  H  + +    +   ++K + YG G  +IA  L +  V    V   +E
Sbjct: 537 LEVNLNAVVDNLNHYRSFMKPTTKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVADE 596

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-HP 123
           GV LR     + I ++   +P     K +FD +L P + S   L    K     GV+  P
Sbjct: 597 GVTLRKNGITSNIMIM---NPEMTAFKTMFDYDLEPEVYSFRLLEALIKAAEKEGVAGFP 653

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACAD-DPSSHVNSVQLER 181
             +++DTG +RLG    + +D        +   +   + SH   +D D     ++ Q   
Sbjct: 654 VHVKLDTGMHRLGFDPNKDIDRLIARMQHQNAVIPRSVFSHFVGSDSDSFDEFSARQFAL 713

Query: 182 F----RTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F    R L + +   I   + +S+GI   P     + R G+ LYG   + N  H +  V 
Sbjct: 714 FDEGSRKLQAAFPHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGIDSRNN--HIINNVC 771

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ +R   AG+ V Y  +  + RDS+IA   IGYADG    L            +
Sbjct: 772 TLKTTILQLRHVPAGDTVGYSRKGVIDRDSVIAAIPIGYADGLNRRLGN----RRCYCLV 827

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           GGK          +G I MD+TM D+T  +  + GD ++IFG  + +  ++ A  T  Y+
Sbjct: 828 GGK------RAEYVGNICMDVTMIDVT-GIDCKEGDSVEIFGDHLPVTVLSDALDTIPYE 880

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 881 VLTCISNRVKRVY 893


>gi|325571360|ref|ZP_08146860.1| serine/alanine racemase [Enterococcus casseliflavus ATCC 12755]
 gi|325155836|gb|EGC68032.1| serine/alanine racemase [Enterococcus casseliflavus ATCC 12755]
          Length = 700

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 165/366 (45%), Gaps = 37/366 (10%)

Query: 15  ALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L   GV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRLIPAKTKVMAVVKADAYGCDAQLVARTLERVGVDFFAVATIEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K   + N   +I ++        L   G+     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAK---ELNRYSLIQTIVSEAHGQALARTGLQIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNS-VQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D  D +S + +  Q+  F  L++   
Sbjct: 467 RLGVA--PDLETVRRLYALPSLKITGIFSHLGSSDQLDTASILRTQAQIICFDDLLA--- 521

Query: 191 GIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTA 238
           G+ A         L SS GIL  P   +   RPGI L G     N+       +Q ++T 
Sbjct: 522 GLSARNIAYGLTHLQSSYGILNYPEKQYDYVRPGILLTGSLSVPNEPTKQKINVQPILTL 581

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A ++  +   AGE + YG      R + I + +IGY DG P  LS    + S       
Sbjct: 582 KALLVDKKTVAAGEAIGYGLATVFDRPTTIGIVSIGYCDGVPRALSNQGFQLS------- 634

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
               +G ++P +G I MDM + D+TD   + V  +++         + A  + T   +L+
Sbjct: 635 ---YQGVLLPQVGLICMDMLLIDLTDYPELAVESWLEAIS---DWTNTADQAQTIPNELI 688

Query: 359 VRIGTR 364
            R+G+R
Sbjct: 689 SRLGSR 694


>gi|241190627|ref|YP_002968021.1| alanine racemase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196033|ref|YP_002969588.1| alanine racemase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|240249019|gb|ACS45959.1| alanine racemase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250587|gb|ACS47526.1| alanine racemase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793616|gb|ADG33151.1| alanine racemase [Bifidobacterium animalis subsp. lactis V9]
          Length = 455

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 177/404 (43%), Gaps = 50/404 (12%)

Query: 11  IDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL AL++N   +    N   G      VVK +AYG G    A A    G     V    
Sbjct: 36  VDLAALRDNMRHLVDITNREGGPTEVMGVVKADAYGHGLVPSALAALAGGATWLGVAQAR 95

Query: 67  EGVKLR---LYTPQARI--FVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG- 119
           E + LR   +   +AR+  +V   +H P  + I  D +L     SV  LT   K+     
Sbjct: 96  EALALRNAGIGVDRARVLTWVNNPLHAPYDDLIAADVDL-----SVATLTAIQKIAEAAR 150

Query: 120 -VSHPYA--LQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSS- 172
            V  P    ++VDTGF R G +L +   A+D      ++ + ++    SHLA AD P+  
Sbjct: 151 AVGKPARVHIKVDTGFGRNGFTLAQIDSAIDLLLPLVDEGVFEIVGQWSHLAVADAPAVG 210

Query: 173 ---HVNSVQLERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTD 224
                   Q+  F    S  H +GIE     LA+++  L  P  H+ L RPG++LYG   
Sbjct: 211 EFVEKTDEQIRVFEEFTSRLHARGIEPRIRHLANTAATLSRPEIHYDLVRPGVALYGYEA 270

Query: 225 KINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
                 P    ++  +T +A++  ++   AGE +SYG        +  A+  +GYADG  
Sbjct: 271 DPAMGTPSKYELRPAMTLQAQLSSVKNVGAGEGLSYGRVYVTDEPTSAAIVPVGYADGIH 330

Query: 281 LTLSGLDSEHSPSVFLGGKGFI-----KGYMVPILGKITMDMTMFDI---TDSLSIEVGD 332
            + SG +   S  V   G            +  + G++ MD  + D+    +++ + +GD
Sbjct: 331 RSASGFNEAGSKHVNKPGAPVRVMTRDGARIFHVSGRVCMDQFILDLHGDAENMGVHIGD 390

Query: 333 YIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 391 TVELFGPGRGEDYLEPTADDWARAADTISYEIFTCLRNRVPRLY 434


>gi|229542538|ref|ZP_04431598.1| alanine racemase [Bacillus coagulans 36D1]
 gi|229326958|gb|EEN92633.1| alanine racemase [Bacillus coagulans 36D1]
          Length = 383

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 163/373 (43%), Gaps = 27/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL A+  N  +M  L   + +  AVVK NAYG G E +A     +G     V  ++E
Sbjct: 9   VEVDLDAISENVGNMRQLLPEHTQIIAVVKANAYGHGAEYVAKTALASGASALAVAFLDE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR     A I VL    P    +  + N+   +     L    + ++ G      L+
Sbjct: 69  ALALRKKGITAPILVLGAARPEDAGVAAEENISLTVFQKDWLEEAGRYLT-GRKLSVHLK 127

Query: 128 VDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            DTG  R+G+ +LQE  +       +       I +H A AD+  + +   Q  +F+ ++
Sbjct: 128 CDTGMGRIGVRTLQELKEVEKIVNQQSCFYFEGIFTHFATADEIDTTLYEKQYSQFQDMV 187

Query: 187 SH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEA 240
            +  ++      A+S+  L      F   R GI++YG +     K     P++   +   
Sbjct: 188 LNLEHRPPYVHCANSAAALRFDQSPFNAVRFGIAMYGLSPSPAIKPVLPFPLKEAFSLHT 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++  +++  AG+ VSYG   + + D  IA   IGYADG+   LSG +             
Sbjct: 248 KVTHVKQIHAGDTVSYGATYQASGDEWIATLPIGYADGWIRRLSGQEV------------ 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            I G   PI+G+I MD  M  +  +  + VG    + G      I +D++A    T NY+
Sbjct: 296 IIDGERAPIVGRICMDQCMVKL--ARPVAVGTKATLIGKQGDLSIPVDEIAEKLETINYE 353

Query: 357 LLVRIGTRYAKFY 369
           +   I +R  + +
Sbjct: 354 VTCSISSRVPRIF 366


>gi|183602553|ref|ZP_02963918.1| alanine racemase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683598|ref|YP_002469981.1| alanine racemase [Bifidobacterium animalis subsp. lactis AD011]
 gi|183218194|gb|EDT88840.1| alanine racemase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621248|gb|ACL29405.1| alanine racemase [Bifidobacterium animalis subsp. lactis AD011]
          Length = 452

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 177/404 (43%), Gaps = 50/404 (12%)

Query: 11  IDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL AL++N   +    N   G      VVK +AYG G    A A    G     V    
Sbjct: 33  VDLAALRDNMRHLVDITNREGGPTEVMGVVKADAYGHGLVPSALAALAGGATWLGVAQAR 92

Query: 67  EGVKLR---LYTPQARI--FVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG- 119
           E + LR   +   +AR+  +V   +H P  + I  D +L     SV  LT   K+     
Sbjct: 93  EALALRNAGIGVDRARVLTWVNNPLHAPYDDLIAADVDL-----SVATLTAIQKIAEAAR 147

Query: 120 -VSHPYA--LQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSS- 172
            V  P    ++VDTGF R G +L +   A+D      ++ + ++    SHLA AD P+  
Sbjct: 148 AVGKPARVHIKVDTGFGRNGFTLAQIDSAIDLLLPLVDEGVFEIVGQWSHLAVADAPAVG 207

Query: 173 ---HVNSVQLERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTD 224
                   Q+  F    S  H +GIE     LA+++  L  P  H+ L RPG++LYG   
Sbjct: 208 EFVEKTDEQIRVFEEFTSRLHARGIEPRIRHLANTAATLSRPEIHYDLVRPGVALYGYEA 267

Query: 225 KINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
                 P    ++  +T +A++  ++   AGE +SYG        +  A+  +GYADG  
Sbjct: 268 DPAMGTPSKYELRPAMTLQAQLSSVKNVGAGEGLSYGRVYVTDEPTSAAIVPVGYADGIH 327

Query: 281 LTLSGLDSEHSPSVFLGGKGFI-----KGYMVPILGKITMDMTMFDI---TDSLSIEVGD 332
            + SG +   S  V   G            +  + G++ MD  + D+    +++ + +GD
Sbjct: 328 RSASGFNEAGSKHVNKPGAPVRVMTRDGARIFHVSGRVCMDQFILDLHGDAENMGVHIGD 387

Query: 333 YIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 388 TVELFGPGRGEDYLEPTADDWARAADTISYEIFTCLRNRVPRLY 431


>gi|300173959|ref|YP_003773125.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811]
 gi|299888338|emb|CBL92306.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811]
          Length = 376

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 164/378 (43%), Gaps = 35/378 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + ID  A++ N   +   +G  R   VVK N YG G      ALY  GV+DF V ++ E 
Sbjct: 16  IAIDSEAIQENARIIMQYTGAKRLIGVVKANGYGFGAVATVKALYEIGVRDFAVATIAEA 75

Query: 69  VKLRL-YTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
             LR   T      +L G+       I+   +L P +  +  L    KL+  G      L
Sbjct: 76  AILRQEVTYDDFQILLLGVQDVAFVDIMVAYHLSPAVGDLSWLQQAVKLIPEGKVLEVQL 135

Query: 127 QVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            +DTG  R+G      ++E  +F  +S   KL QL    +H A ADD +      Q+E F
Sbjct: 136 AIDTGMGRMGAHSQSQVKEMYEFIQSS--DKL-QLMGAFTHFATADDNNQSYYDHQVENF 192

Query: 183 RTLISHYKGIEAS---LASS-SGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTV 235
              + H   I      LA+S S +      +    R G  LYG   G  + +    +++V
Sbjct: 193 YKWV-HGANIPEKYWHLANSGSALWHKKEINIHTIRVGSVLYGYNPGAPERDMPIKLKSV 251

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++RI  + +  AGE VSYG      R   +A   IGYADGY   ++G+         
Sbjct: 252 LSLKSRIGFVHELQAGESVSYGATYTAERPQWVATLPIGYADGYLRRMTGM--------- 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              +  I G++  ++G++TMD  +  +       V   + + G D    I L++ A  + 
Sbjct: 303 ---RVLIAGHVEHVIGRVTMDQIVISLDKKYP--VNTEVTLIGQDGDEEITLEEFAEYAK 357

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  +++     +R  + Y
Sbjct: 358 TIPHEISTTFSSRLPRIY 375


>gi|18460981|gb|AAK53980.1| VanTc-2 [Enterococcus casseliflavus]
          Length = 706

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 164/366 (44%), Gaps = 37/366 (10%)

Query: 15  ALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 356 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVAGTLERAGVDFFAVATLEEAIELRR 415

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L        K +   +LI  I S         L    +     L VDTG +
Sbjct: 416 AGIKSRLLILGYTSAQHAKEMKHYSLIQTIVSEAH---GHALAQTSIPIECHLAVDTGMH 472

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNS-VQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D  D +S + +  Q+  F  L++   
Sbjct: 473 RLGVA--PDLEAVTGLYALPSLKITRIFSHLGSSDQLDTASILRTQAQITCFDDLLA--- 527

Query: 191 GIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTA 238
           G+ A         L SS GIL  P  H+   RPGI L G     N+       +Q ++T 
Sbjct: 528 GLSARNIVYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTL 587

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A ++  +   AGE + YG      R + I + +IGY DG P  LS    + S       
Sbjct: 588 KALLVDKKTVAAGEAIGYGLGTIFDRPATIGIVSIGYCDGVPRALSNQGFQLS------- 640

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
               +G ++P +G + MDM + D+TD   + V   +++        D A    T   +L+
Sbjct: 641 ---YQGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTTADQA---QTITNELI 694

Query: 359 VRIGTR 364
            R+G+R
Sbjct: 695 SRLGSR 700


>gi|329735688|gb|EGG71971.1| alanine racemase [Staphylococcus epidermidis VCU028]
          Length = 382

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 176/388 (45%), Gaps = 42/388 (10%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 2   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMS 117
           F V +++E ++LR++   A++ VL G+ P +  EK I     + V S         ++  
Sbjct: 62  FAVATLDEAIELRMHGVDAKLLVL-GVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPD 120

Query: 118 CGVSHPY-ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDP 170
               + +  +++DTG  R+G+      +E +D  +     K   L    + +H A AD+P
Sbjct: 121 DNQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLIN-----KRDHLVFEGVFTHFASADEP 175

Query: 171 SSHVNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKIN 227
            + +N  Q   F+ +++   K       +S+G LL         R GISLYG   ++ + 
Sbjct: 176 GNSMNE-QYTLFKEMVNQVEKPNYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVK 234

Query: 228 KSHPMQTVVTAE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            +  +    +A+  +  + ++   AGE VSYG       +  IA+  IGYADGY  ++ G
Sbjct: 235 DNVKVHLRPSAQLVSETVQVKTLKAGETVSYGRTYIADEEMTIAILPIGYADGYLRSMQG 294

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI---- 341
                    F+     + G    ++G+I MD  +  +     ++ G+ + +    +    
Sbjct: 295 --------AFVN----VNGSQCEVIGRICMDQLIVKVPS--HVKTGEKVILMDNHVDSPQ 340

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
             + VA   GT NY++L  +  R  + Y
Sbjct: 341 SAEAVANKQGTINYEVLCNLSRRLPRIY 368


>gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
 gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
          Length = 833

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 171/383 (44%), Gaps = 40/383 (10%)

Query: 9   LKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L  + +   +VK  AYG G  +IA  L    V    V   +E
Sbjct: 466 LEINLGALVHNLNFYREQLPSHTKMMVMVKAFAYGSGSAEIAHLLQFHRVDYLGVAYADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQL-TFYSKLMSCGVSHPY 124
           GV LR       I V+   +P ++    +   +L P + S   L  F   L     +   
Sbjct: 526 GVFLRESGIDLPIMVM---NPSEDTFDKLLQYDLEPEMYSFKVLDEFIHFLKEQQTTAKV 582

Query: 125 ALQVDTGFNRLGLSLQEA------LDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNS 176
            L++DTG +RLG  ++E       L          L  LS+  + SHLA +D+ +   N+
Sbjct: 583 HLKIDTGMHRLGFVVEEVPRLLQVLQQPDTQQKAPLDYLSIASVFSHLAGSDEATH--NA 640

Query: 177 VQLERFRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYG-GTDKIN 227
              ++     +  K IE +L         +S GI+  P   F + R GI LYG   ++I 
Sbjct: 641 YSQQQITLFEAATKQIETALGYEVIKHILNSPGIVRFPEASFDMVRLGIGLYGIEANQIA 700

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS-GL 286
           +S  +Q++      I  I+    GE V Y  +   +  +  A  AIGYADG+    S G+
Sbjct: 701 QSQ-LQSISRLTTTISQIKYLQPGETVGYSRKGVASHTTKTATVAIGYADGFSRAFSNGV 759

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                      GK  + G  VP++G + MDM M D+T   + E GD + IF  ++ + D+
Sbjct: 760 -----------GKVMVNGAKVPVIGNVCMDMCMIDVTGVEATE-GDEVIIFNEELSILDL 807

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A +  T  Y++L  I  R  + +
Sbjct: 808 AQSIDTIPYEILTNISQRVKRVF 830


>gi|293606270|ref|ZP_06688632.1| alanine racemase [Achromobacter piechaudii ATCC 43553]
 gi|292815335|gb|EFF74454.1| alanine racemase [Achromobacter piechaudii ATCC 43553]
          Length = 375

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 153/345 (44%), Gaps = 31/345 (8%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AV+K NAYG G E+       A  Q   +  ++E V+ R       I +L G   P    
Sbjct: 41  AVIKANAYGHGIEQAVTGFSKA--QGLAMLDLDEAVRCREAGWGGPILLLEGFFKPADLD 98

Query: 93  IIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSF 150
           +I   +L   + +  QL   ++   S  V     L++++G NRLG S       F     
Sbjct: 99  LIDRYHLSTTVHNREQLDMLARARFSRRVD--IMLKLNSGMNRLGFSPASYPAAFERAML 156

Query: 151 NKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSS-----GIL 203
            ++ G L  +  ++H ACAD P       QL  F ++     G  +   S++      I 
Sbjct: 157 LQQQGTLGSVGKMTHFACADGPQGVTE--QLALFNSVTHKLPGTISVCNSAATLRFADIA 214

Query: 204 LGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
           +         RPGI LYG +   D    S  ++  +T  + II +++  AG+ V YG   
Sbjct: 215 VSSPTQTHWVRPGICLYGASPFADAQAASFGLKPALTLSSEIIAVQELKAGDSVGYGAIF 274

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
           +  R   I + A GYADGYP         H+ +   G    + G    ++G+++MDM + 
Sbjct: 275 RAERAMRIGIVACGYADGYP--------RHATT---GTPVVVAGIRTQLVGRVSMDMLIV 323

Query: 321 DITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTR 364
           D+    +  VG  + ++G D   +DDVA A+GT  Y+LL  +  R
Sbjct: 324 DLDPVPAAGVGTPVVLWGEDGPSVDDVAQAAGTIGYELLCALAPR 368


>gi|289178366|gb|ADC85612.1| Alanine racemase [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 476

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 177/404 (43%), Gaps = 50/404 (12%)

Query: 11  IDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL AL++N   +    N   G      VVK +AYG G    A A    G     V    
Sbjct: 57  VDLAALRDNMRHLVDITNREGGPTEVMGVVKADAYGHGLVPSALAALAGGATWLGVAQAR 116

Query: 67  EGVKLR---LYTPQARI--FVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG- 119
           E + LR   +   +AR+  +V   +H P  + I  D +L     SV  LT   K+     
Sbjct: 117 EALALRNAGIGVDRARVLTWVNNPLHAPYDDLIAADVDL-----SVATLTAIQKIAEAAR 171

Query: 120 -VSHPYA--LQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSS- 172
            V  P    ++VDTGF R G +L +   A+D      ++ + ++    SHLA AD P+  
Sbjct: 172 AVGKPARVHIKVDTGFGRNGFTLAQIDSAIDLLLPLVDEGVFEIVGQWSHLAVADAPAVG 231

Query: 173 ---HVNSVQLERFRTLIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTD 224
                   Q+  F    S  H +GIE     LA+++  L  P  H+ L RPG++LYG   
Sbjct: 232 EFVEKTDEQIRVFEEFTSRLHARGIEPRIRHLANTAATLSRPEIHYDLVRPGVALYGYEA 291

Query: 225 KINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
                 P    ++  +T +A++  ++   AGE +SYG        +  A+  +GYADG  
Sbjct: 292 DPAMGTPSKYELRPAMTLQAQLSSVKNVGAGEGLSYGRVYVTDEPTSAAIVPVGYADGIH 351

Query: 281 LTLSGLDSEHSPSVFLGGKGFI-----KGYMVPILGKITMDMTMFDI---TDSLSIEVGD 332
            + SG +   S  V   G            +  + G++ MD  + D+    +++ + +GD
Sbjct: 352 RSASGFNEAGSKHVNKPGAPVRVMTRDGARIFHVSGRVCMDQFILDLHGDAENMGVHIGD 411

Query: 333 YIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 412 TVELFGPGRGEDYLEPTADDWARAADTISYEIFTCLRNRVPRLY 455


>gi|256785780|ref|ZP_05524211.1| alanine racemase [Streptomyces lividans TK24]
 gi|289769672|ref|ZP_06529050.1| alanine racemase [Streptomyces lividans TK24]
 gi|289699871|gb|EFD67300.1| alanine racemase [Streptomyces lividans TK24]
          Length = 338

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 150/337 (44%), Gaps = 37/337 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N  ++   +  A   AVVK +AYG G    A A   AG       + +E
Sbjct: 17  RAEIDLAALRANVRALRERAPGAALMAVVKADAYGHGAIPCARAAVAAGATWLGTATPQE 76

Query: 68  GVKLRLYTP----QARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGV 120
            + LR   P      RI        G  +   +  L   +  + ++ ++T  ++  + GV
Sbjct: 77  ALALRAAEPGLPDDVRIMCWLWTPGGPWREAVEARLDVSVSAMWAMEEVTGAAR--AAGV 134

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTH------NSFNKKLGQLSLIISHLACADDPSSHV 174
                L+ DTG  R G   Q   D+         +  + L +++ + SH ACAD+P    
Sbjct: 135 PARVQLKADTGLGRGG--CQPGADWERLVGAALRAEEEGLLRVTGLWSHFACADEPGHPS 192

Query: 175 NSVQLERFRTLISH--YKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
            + QL RFR + ++   +G+      +A+S   L  P+ HF L RPGI++YG +      
Sbjct: 193 IAAQLTRFREMTAYAEQRGLRPEVRHIANSPATLTLPDAHFDLVRPGIAMYGVSPSPEIG 252

Query: 230 HP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            P    ++ V+T  A + L+++   G  VSYG       ++ + +  +GYADG P     
Sbjct: 253 TPADFGLRPVMTLAASLALVKQVPGGHGVSYGHHYTTPGETTLGLVPLGYADGIP----- 307

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
               H+ S    G   + G    + G+I MD  + D+
Sbjct: 308 ---RHASS---SGPVLVDGKWRTVAGRIAMDQFVVDL 338


>gi|116872288|ref|YP_849069.1| alanine racemase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123460815|sp|A0AH04|ALR_LISW6 RecName: Full=Alanine racemase
 gi|116741166|emb|CAK20286.1| alanine racemase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 368

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 168/378 (44%), Gaps = 39/378 (10%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  + L  N    AVVK NAYG G  + A     AG + F V  ++E
Sbjct: 11  IEIDREAIRANIKNEQHRLPENVALWAVVKANAYGHGIIETAKTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYA 125
            + LR    +    ++ G    ++  +   N I        LT + +  L +  +  P  
Sbjct: 71  ALALREAGFRNDFILVLGATRQEDANLAAKNNI-------SLTVFREDWLHNLTLEAPLR 123

Query: 126 --LQVDTGFNRLGL-SLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             L+VD+G  RLG+ S +EA       + + +L  L  I +H A AD   +     QL++
Sbjct: 124 IHLKVDSGMGRLGIRSTEEAKQIEARIALDHQL-ILEGIYTHFATADQLETSYFEQQLDK 182

Query: 182 FRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP--MQTV 235
           F T+++ ++     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  
Sbjct: 183 FTTILTSFESRPTFVHTANSAASLLQPQMDFDAVRFGISMYGLTPSLEIKNSLPFELKPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +     ++ +++   G+ VSYG     T    +A   IGYADG     SG          
Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGYHV------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G + PI+G++ MD T+  +      + G  + I G D    I  DD A   G
Sbjct: 296 -----LVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAADYLG 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   +  R  + Y
Sbjct: 349 TINYEVTCLLSDRIPRKY 366


>gi|226952236|ref|ZP_03822700.1| alanine racemase [Acinetobacter sp. ATCC 27244]
 gi|226837074|gb|EEH69457.1| alanine racemase [Acinetobacter sp. ATCC 27244]
          Length = 375

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 163/378 (43%), Gaps = 50/378 (13%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+ N   +     N++  AVVK NAYG G E++  A   A    F +  +EE  +
Sbjct: 9   IHTQALRQNLELLRTTVPNSKVFAVVKANAYGHGIERVYDAFKTA--DGFALLDIEEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           LR       I +L GI   Q+  +FD     L   + S  QL +  +       H Y  Q
Sbjct: 67  LRALGWTGPILLLEGIFSPQD--LFDCAQYQLSFTVHSEHQLEWLQQ-------HIYPAQ 117

Query: 128 VD------TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSV-- 177
            D      +G NRLG   Q+      +   ++L  ++ I  + H + AD        V  
Sbjct: 118 FDIFLKMNSGMNRLGFKPQQYRQVWRHL--QRLNNVAKITHMMHFSDADGQRFGQAGVDY 175

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHPMQ--- 233
           QL  F T I    G E S+++S+ IL  P   H    R GI LYG +    + H +Q   
Sbjct: 176 QLAEFETHIQDLPG-ERSVSNSAAILRYPTQLHSDYVRGGIMLYGSSPDYPQ-HSIQDWG 233

Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
               ++  + +I I++    E V YG          + + A GYADGY           S
Sbjct: 234 LAPTMSLRSELIAIQQLKTNESVGYGSSFVAEHAMSVGIVACGYADGY--------QRIS 285

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDV 346
           P+   G    + G     +G+++MDM   D+T   + E+G  + ++G       + +DDV
Sbjct: 286 PT---GTPILVNGIRTRTIGRVSMDMLAVDLTPVPNAEIGSEVVLWGTSKTGSILPIDDV 342

Query: 347 ALASGTTNYDLLVRIGTR 364
           A ASGT  Y+L+  +  R
Sbjct: 343 AAASGTVGYELMCGVTAR 360


>gi|294648818|ref|ZP_06726275.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194]
 gi|292825310|gb|EFF84056.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194]
          Length = 375

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 163/378 (43%), Gaps = 50/378 (13%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+ N   +     N++  AVVK NAYG G E++  A   A    F +  +EE  +
Sbjct: 9   IHTQALRQNLELLRTTVPNSKVFAVVKANAYGHGIERVYDAFKTA--DGFALLDIEEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           LR       I +L GI   Q+  +FD     L   + S  QL +  +       H Y  Q
Sbjct: 67  LRALGWTGPILLLEGIFSPQD--LFDCAQYQLSFTVHSEHQLEWLQQ-------HIYPAQ 117

Query: 128 VD------TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSV-- 177
            D      +G NRLG   Q+      +   ++L  ++ I  + H + AD        V  
Sbjct: 118 FDIFLKMNSGMNRLGFKPQQYRQVWRHL--QRLNNVAKITHMMHFSDADGQRFGQAGVDY 175

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHPMQ--- 233
           QL  F T I    G E S+++S+ IL  P   H    R GI LYG +    + H +Q   
Sbjct: 176 QLAEFETHIQDLPG-ERSVSNSAAILRYPTQLHSDYVRGGIMLYGSSPDYPQ-HSIQDWG 233

Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
               ++  + +I I++    E V YG          + + A GYADGY           S
Sbjct: 234 LAPTMSLRSELIAIQQLKTNESVGYGSSFVAEHAMSVGIVACGYADGY--------QRIS 285

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDV 346
           P+   G    + G     +G+++MDM   D+T   + E+G  + ++G       + +DDV
Sbjct: 286 PT---GTPILVNGIRTRTIGRVSMDMLAVDLTPVPNAEIGSEVVLWGTSKTGSILPIDDV 342

Query: 347 ALASGTTNYDLLVRIGTR 364
           A ASGT  Y+L+  +  R
Sbjct: 343 AAASGTVGYELMCGVTAR 360


>gi|219684698|ref|ZP_03539641.1| alanine racemase [Borrelia garinii PBr]
 gi|219672060|gb|EED29114.1| alanine racemase [Borrelia garinii PBr]
          Length = 366

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 28/352 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I        +  F ++++E+   L+      +I +   + 
Sbjct: 26  GEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 85

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGLSLQEALD 144
             + K +    L+P ++    L    K   C +        L++D G NR G+ +  AL+
Sbjct: 86  KKEIKNLIKLELLPFVADFEYLFLIEK--ECALQKKKIKVHLKIDIGMNRYGIRIDSALE 143

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N +  +L  + SHL   ++  +     Q+E+F  ++     K I       S+S
Sbjct: 144 IATYIQNSQFLELEGVCSHLPATENFET--TQKQIEKFLLVLETLKQKNINPKFVHISNS 201

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKI-NKSHPM--QTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    + NK   +  + V+   +++I I+    GE +S
Sbjct: 202 GHIINYKINPQFNMVRPGLILYGYCQSLKNKKTTLNFKPVLNLFSKVIFIKNVKKGEKIS 261

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +      ++   FL     I      I GK+ M
Sbjct: 262 YSGIFQAKEDMKIGIIPIGYFDGIPQNI------NNNFYFL-----INNQKCKIRGKVCM 310

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++T+ +I   L +  G  ++I    + +D ++  S  ++Y+LL  IG +Y K
Sbjct: 311 NLTIVEIPKDLKVRTGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIG-KYEK 361


>gi|262374558|ref|ZP_06067832.1| alanine racemase [Acinetobacter junii SH205]
 gi|262310554|gb|EEY91644.1| alanine racemase [Acinetobacter junii SH205]
          Length = 367

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 166/377 (44%), Gaps = 48/377 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+ N   +   + +++  AVVK NAYG G E++  AL  A    F +  ++E  +
Sbjct: 9   IHTQALRQNLEVVRTSAPDSKVFAVVKANAYGHGIERVYDALKTA--DGFALLDIDEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           LR       I +L GI   Q+  +FD     L   + S  Q+ +  +       H Y  Q
Sbjct: 67  LRALGWTGPILLLEGIFSPQD--LFDCAEYQLSFTVHSEHQVEWIQQ-------HIYPAQ 117

Query: 128 VD------TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSV-- 177
            D      +G NRLG   Q+      +   ++L  +S I  ++H + AD        V  
Sbjct: 118 FDIFLKMNSGMNRLGFKPQQYRKIWQHL--QRLNNVSNITHMTHFSDADGERFGQAGVEY 175

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINK----SHPM 232
           QL  F + I    G E S+++S+ IL  P+  H    R GI LYG +    K       +
Sbjct: 176 QLAEFESTIQDLPG-ERSVSNSAAILRYPSQVHSDYVRGGIMLYGSSPDYPKHSIHDWGL 234

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++  + +I I++  A E V YG          I + A GYADGY  T        SP
Sbjct: 235 APTMSLRSELIAIQQLNANESVGYGSSFVAAHAMTIGIVACGYADGYQRT--------SP 286

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVA 347
           +   G    + G     +G+++MDM    +T   + E+G  + ++G       + +DDVA
Sbjct: 287 T---GTPVLVNGIRTRTIGRVSMDMLAVYLTPVPNAEIGSEVVLWGTSKTGQILSIDDVA 343

Query: 348 LASGTTNYDLLVRIGTR 364
            ASGT  Y+L+  +  R
Sbjct: 344 AASGTVGYELMCGVTAR 360


>gi|226310085|ref|YP_002769979.1| alanine racemase [Brevibacillus brevis NBRC 100599]
 gi|226093033|dbj|BAH41475.1| alanine racemase [Brevibacillus brevis NBRC 100599]
          Length = 400

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 167/382 (43%), Gaps = 37/382 (9%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL A++ N  +    L       AVVK + YG G   +      +G     V  ++E
Sbjct: 10  VEVDLDAIRANLETFKRHLPEKTDIMAVVKADGYGHGAVHVGKEALASGADSLAVALLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS--SVPQLTFYSKLMSCGVSHPYA 125
            + LR     A I VL G  P  E I+  + L   ++  SV  +T  + ++      P  
Sbjct: 70  ALILRRAGITAPILVL-GYTP-VESIVTASELEVELTAYSVEWITEANDILQKNDHKPVG 127

Query: 126 LQV--DTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDP-SSHVNSVQLE 180
           + V  DTG  RLG+  +E L     +  +  KL + + I +H ACAD+P ++HV   Q +
Sbjct: 128 IHVKTDTGMGRLGVRTKEDLLAVVGALEECSKL-KWTGIFTHFACADEPDTTHVRR-QHD 185

Query: 181 RFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            F++ +   +     L      +++  +  P++ +   R GI LYG    +        +
Sbjct: 186 LFQSFLQALREANKKLPTVHCCNTAAAIAFPDWGYDTIRLGIGLYGLYPSLYMKERADVI 245

Query: 236 VTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +T     + RI  ++KA     VSYG       D  IA   IGYADGY   LS       
Sbjct: 246 LTPALALKTRIAHVKKADEPFTVSYGATHTAQPDEWIATLPIGYADGYSRLLSN------ 299

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
                 G+    G   PI G++ MD  M  + +S    V D + ++G     +I LD++A
Sbjct: 300 -----RGEVLYNGTRYPIAGRVCMDQIMVSL-NSTEAAVNDEVVLYGKQGDEEISLDEIA 353

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++   +  R  + Y
Sbjct: 354 DLLGTINYEVPCMLNYRIPRLY 375


>gi|108563349|ref|YP_627665.1| alanine racemase, biosynthetic [Helicobacter pylori HPAG1]
 gi|123373729|sp|Q1CST1|ALR_HELPH RecName: Full=Alanine racemase
 gi|107837122|gb|ABF84991.1| alanine racemase, biosynthetic [Helicobacter pylori HPAG1]
          Length = 377

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 180/382 (47%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR + P+  I +L G  P     ++ D +L  ++ S+ Q   +S++ +         
Sbjct: 68  ALELRSHFPKTPILIL-GYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIETIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++ + +S P  
Sbjct: 187 FLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKESCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +   
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRIQ 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
            +        I   + P++GK+ MD     + D  + E GD + +FG    + +D   +A
Sbjct: 304 VA--------INNQLAPLIGKVCMDQCFVKLNDIQAKE-GDEVILFGDKSARANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIAYETISTLSKRLERVY 376


>gi|288573304|ref|ZP_06391661.1| alanine racemase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569045|gb|EFC90602.1| alanine racemase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 371

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 159/376 (42%), Gaps = 26/376 (6%)

Query: 8   RLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+++ L  L  N+ S+ N +    +  +V+K +AYG G  ++A  L + G Q F V + +
Sbjct: 7   RMEVSLDNLAFNYRSIKNHVGPEVQLMSVIKADAYGHGVMEVARRLSSEGCQRFAVATSD 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E   LR       + V+          +   N+   ++ +      SK      +  Y  
Sbjct: 67  EAFALRDGGVGEALLVMGPTSYASAGELVRRNVSVALTDMDMARALSKAAESEGTPAYVH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L+VD+G  R+G   +E         +     +  + +H A AD+        Q  R+  +
Sbjct: 127 LKVDSGMGRIGFLPEEVPAILDELISLPGVVVEGLFTHFATADERRLDYTESQYRRYLDV 186

Query: 186 IS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           ++    KG+      + +S+G L  P  H    RPG+ LYG     +   P++   T E 
Sbjct: 187 LAMLEDKGVRIPVRHVCNSAGTLNSPEKHLDACRPGVILYGMWPSGDCIRPIELKPTFEV 246

Query: 241 R--IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I +IR       V YG +     D  IAV  IGYADG     S           +  
Sbjct: 247 KTSIAMIRNLPPRSGVGYGLRYMTRGDERIAVLPIGYADGLSRAFS-----------MRI 295

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS-GTT 353
           +  +KG  VP +G I MD TM D+T  L + VGD + I G      I  D++A A   T 
Sbjct: 296 QMLVKGTRVPQVGNICMDQTMIDVT-GLDVSVGDEVVIVGSQGDETITPDELAGARHNTI 354

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++ +    R  + Y
Sbjct: 355 NYEIPIMFSKRVPRVY 370


>gi|224534199|ref|ZP_03674777.1| alanine racemase [Borrelia spielmanii A14S]
 gi|224514301|gb|EEF84617.1| alanine racemase [Borrelia spielmanii A14S]
          Length = 372

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 153/354 (43%), Gaps = 27/354 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I        +  F ++++E+   L+      +I +   + 
Sbjct: 32  GEKEIVATLKGDAYGHGLINIFKFFKAKKINYFGLSNIEDAKTLKKIDKSTKILMYIKVD 91

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGLSLQEALD 144
             + K +    L+P ++    L    K   C +        L++D G NR G+ +  AL+
Sbjct: 92  KKEIKNLIKLELLPFVADFEYLFLIEK--ECALQKKKIKVHLKIDVGMNRYGIKIGSALE 149

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  + SHL   ++    +   Q+E+F   +     K I       S+S
Sbjct: 150 IAKYIQNSKFLELEGVCSHLPTTEN--FKITQKQIEQFLFFLETLKQKNINPKFIHISNS 207

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKI-NKSHPM--QTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    + NK   +  + V+   ++++ I+    GE +S
Sbjct: 208 GHIINYKLNPQFNMVRPGLILYGYYPSLKNKKTTLNFKPVLNLFSKVVFIKNVKKGEKIS 267

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +      ++   FL     I      I GK+ M
Sbjct: 268 YSGTFQAKEDMQIGIIPIGYFDGIPQNI------NNNFYFL-----INNKKCKIRGKVCM 316

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++T+ +I   L +E G  ++I    + +D+++  S  + Y+LL  IG    K Y
Sbjct: 317 NLTIVEIPKDLKVETGLKVEIVSEKLSIDEMSKFSKRSPYELLCNIGKYENKKY 370


>gi|222151977|ref|YP_002561137.1| alanine racemase homolog [Macrococcus caseolyticus JCSC5402]
 gi|254802369|sp|B9E8C3|ALR_MACCJ RecName: Full=Alanine racemase
 gi|222121106|dbj|BAH18441.1| alanine racemase homolog [Macrococcus caseolyticus JCSC5402]
          Length = 380

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 159/375 (42%), Gaps = 33/375 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + ++L A+ +N+  +  L  N    AV+K N YGLG   IA  L  +G   F V +++E 
Sbjct: 11  VNVNLDAISSNFKHIEKLHPNKTVIAVIKANGYGLGSVNIAKHLMTSGTDFFAVATLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL-- 126
           ++LR++  +A+I VL  + P   +      L         +   S+ +      P  L  
Sbjct: 71  IELRMHGIKAKILVLGVVDPKHIRQASRHRLALTAPDAKWVEDASRYIE-AEDKPVWLHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRT 184
           +VD+G  R+G+  ++A D   +     + Q     + +H + AD+ ++ +     ++F  
Sbjct: 130 KVDSGMGRIGVQTKQAYDMVVDKV-AAVEQFIFEGVFTHFSSADEDNA-LTERAYDKFLG 187

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKINKSHPMQTVV 236
           +I+  K       +S+  L          R GISLYG            +     +Q V 
Sbjct: 188 IINDNKPQYIHCQNSAATLRYDCSECNAVRLGISLYGYYPSEFIRAVSNVKLQPAVQLVS 247

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           TA      I+   +G+ VSYG       D ++A   IGYADG P  + G +         
Sbjct: 248 TA----CFIKHIKSGDTVSYGATYTAQSDEVVATFPIGYADGLPRAMQGYNIN------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK--LDDVALASGTTN 354
                ++G  VPI+G++ MD  M  + D   +     I     D    L+ VA   GT  
Sbjct: 297 -----LEGTEVPIIGRVCMDQMMARVPDDTLLGAQCIIIDNNADSNQSLERVAQQLGTIT 351

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  +  R  K Y
Sbjct: 352 YEVLTSLSRRLPKRY 366


>gi|225869174|ref|YP_002745122.1| alanine racemase [Streptococcus equi subsp. zooepidemicus]
 gi|259710074|sp|C0MEB7|ALR_STRS7 RecName: Full=Alanine racemase
 gi|225702450|emb|CAX00342.1| alanine racemase [Streptococcus equi subsp. zooepidemicus]
          Length = 366

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 170/373 (45%), Gaps = 31/373 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++DL A++ N   +   L    +T AVVK NAYG G   ++ A+ +  V  + V++++E 
Sbjct: 12  RVDLEAIQANIDKIQRHLPKKVKTYAVVKANAYGHGAVAVSKAVEDQ-VDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
           ++LR       I +L  I   + ++     L   ++S+  L   +K  S   S  +  ++
Sbjct: 71  LELRQAGIDKEILILGVILASELQLAIKHQLTITVASLEWLEL-AKKESVDFSQLHVHVK 129

Query: 128 VDTGFNRLGL-SLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           VD+G  R+G+ SL EA      S    +G QL  I +H A AD+    +   QL  F+ L
Sbjct: 130 VDSGMGRIGVRSLAEANQLI--SILSDMGVQLDGIFTHFATADESDHAMFDKQLTFFKQL 187

Query: 186 ISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEA 240
           +       A +  ++S+  L      F   R GI +YG     + ++   P++  ++ E+
Sbjct: 188 VEQLDKRPALVHASNSATSLWHSETIFSAIRLGIVIYGLNPSGNSLSLPCPLKEALSLES 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R++ +++  AG+ V YG          +    IGYADG+   + G             K 
Sbjct: 248 RLVHVKQIQAGDSVGYGASYVAAEPEYVGTLPIGYADGWTRNMQGF------------KV 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            ++G    I+G+++MD     +T +  I  G  + + G      I   DVA   GT NY+
Sbjct: 296 LVEGEFCDIIGRVSMDQLTIRLTKAYPI--GTKVTLIGQQGKQVITATDVADYRGTINYE 353

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 354 VLCLLSDRIPREY 366


>gi|163840445|ref|YP_001624850.1| alanine racemase [Renibacterium salmoninarum ATCC 33209]
 gi|162953921|gb|ABY23436.1| alanine racemase [Renibacterium salmoninarum ATCC 33209]
          Length = 393

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 168/395 (42%), Gaps = 64/395 (16%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A++ N   +  +S  A+  AVVK + YG G   +A A   AG        V E + 
Sbjct: 14  IDLEAIRQNVRRIADISSPAKVMAVVKADGYGHGAVPVAKAALEAGASWIGTAHVNEALA 73

Query: 71  LR-----------LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           LR           L+TP         +  G +  +    L  ++++  +    +++    
Sbjct: 74  LREAGIDAPLLAWLHTPATDFAA--AVEAGIDLGVSGWELEYIVAAAREQQRPARVH--- 128

Query: 120 VSHPYALQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                 L++DTG  R G +       + EAL+       + +G    + SHLA AD+P+ 
Sbjct: 129 ------LKIDTGLGRNGSTSSLWESLIGEALEHQDEGLLRVVG----LFSHLAVADEPNR 178

Query: 173 HVNSVQLERFR--TLISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTD--- 224
                QL RFR    I+   G++     LA++  I   P+ HF L R G+ +YG +    
Sbjct: 179 AETDDQLARFREAVAIAEDSGVDVEVRHLANTPAIFSRPDTHFDLVRAGVGIYGLSPFAG 238

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
           + ++   +   +T +  +   +   A + VSYG   +    S + +  +GY DG      
Sbjct: 239 QTSEELGLTPAMTLKTLVAHCKDVPADQGVSYGLNYRTAAPSTLGLIPMGYGDGV----- 293

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI------TDSLSIEVGDYIQIFG 338
                  P V  GG   I   +  ++G+I MD  + D+       D  S+ +G    +FG
Sbjct: 294 -------PRVATGGPVRIGDQVYSVVGRIAMDQMVVDLGPNSKMADGCSL-LGHEAVLFG 345

Query: 339 P----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
                D  +D  A A+GT NY++++RI  R  + Y
Sbjct: 346 AAAVGDPSVDLWAAAAGTINYEVVIRIAPRVPRIY 380


>gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
 gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
          Length = 826

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 171/378 (45%), Gaps = 38/378 (10%)

Query: 9   LKIDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+ +N  W+  + +    +   ++K +AYG G  +IA  L +  V    V   +
Sbjct: 467 LEVNLNAVVDNLNWYR-SFMKPETKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVAD 525

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKL-MSCGVS-H 122
           EGV LR     + I ++   +P     K +FD +L P + S   L    K     G++  
Sbjct: 526 EGVTLRKNGITSNIMIM---NPEMSSFKTLFDYDLEPEVYSFRLLDALVKAAQKEGITGF 582

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACAD-DPSSHVNS 176
           P  +++DTG +RLG   Q+ +D        +L   + II     SH   +D D     ++
Sbjct: 583 PVHIKLDTGMHRLGFDPQKDMD----ELIDRLKHQNAIIPRSVFSHFVGSDADSFDEFSA 638

Query: 177 VQLERF----RTLISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q   F    + L + +K  I   + +SSGI   P     + R G+ LYG   + NK   
Sbjct: 639 KQFALFDEGSKKLQAAFKHKIIRHIDNSSGIEHFPARQLDMCRLGLGLYGINPRTNKI-- 696

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  V T +  I+ +R   AG+ V Y  +  +  DS+IA   IGYADG    L    + H 
Sbjct: 697 INNVSTLKTTILQLRHVPAGDTVGYSRKGSIDHDSVIAAIPIGYADGLNRHLG---NRHC 753

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
             +       + G     +G I MD+ M D+T  +  + GD ++IFG  + +  ++    
Sbjct: 754 YCL-------VNGQKAEYVGNICMDVAMIDVT-GIDCKEGDSVEIFGDHLPVTVLSDVLD 805

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  I  R  + Y
Sbjct: 806 TIPYEVLTTISNRVKRVY 823


>gi|326381872|ref|ZP_08203565.1| alanine racemase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199298|gb|EGD56479.1| alanine racemase [Gordonia neofelifaecis NRRL B-59395]
          Length = 386

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 160/388 (41%), Gaps = 31/388 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M S+  L   +DL A+ +N   +   SG A   AVVK + Y  G   +      AG    
Sbjct: 1   MDSHANLYATVDLGAIAHNVGVLRDRSG-ADVIAVVKADGYAHGAVPVGRTALRAGAIAL 59

Query: 61  FVTSVEEGVKLRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  + E   LR       +   L+         I D   I V S              G
Sbjct: 60  GVAQIREARALRAAGLDGHLIAWLHTTDADFAGAITDGIDIAVSSPRQLAAVVQAARGLG 119

Query: 120 VSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            +   ++++DTG  R G++  E     +    +  +    L   + HLA  D P   +NS
Sbjct: 120 RTATVSVKLDTGLARSGVAPDEWDATAEAIAAASAEGAISLHGAMCHLAFGDVPEHPLNS 179

Query: 177 VQLERFRTLISH--YKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSH 230
           +Q ER    ++    +G+   L   A+S   L  P+      RPG+S+YG +        
Sbjct: 180 LQGERLDEAVADLTRRGVTPELVHIANSPAALTRPDLARDAVRPGLSVYGYSPVPEIGDF 239

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +   +T E RI LI++  AG+ VSY       R++ + V   GYADG P  LSG    H
Sbjct: 240 GLIPAMTLETRISLIKRIPAGQGVSYNHTWVAPRNTFLGVVPAGYADGVPRGLSGRLGVH 299

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIK------- 342
                      + G + P +G+I MD  + D+  D   +  GD   +FGP          
Sbjct: 300 -----------VNGRVFPSVGRICMDQLVIDLGPDGGGVAEGDRAILFGPACASAGEPVP 348

Query: 343 -LDDVALASGTTNYDLLVRIGTRYAKFY 369
              D A A+GT +Y+++ R+G+R  + Y
Sbjct: 349 TATDWADATGTIDYEIISRVGSRAVRRY 376


>gi|308183092|ref|YP_003927219.1| alanine racemase [Helicobacter pylori PeCan4]
 gi|308065277|gb|ADO07169.1| alanine racemase [Helicobacter pylori PeCan4]
          Length = 377

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 179/382 (46%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIETIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++ + ++ P  
Sbjct: 187 FLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L        
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRT---- 302

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
                  +  I   + P++GK+ MD     + +++  + GD + +FG    K +D   +A
Sbjct: 303 -------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIPYETISTLSKRLERVY 376


>gi|158523327|gb|ABW70802.1| alanine racemase [Helicobacter pylori]
          Length = 377

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 178/382 (46%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  ++ S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNANASMLIDNDLSAMVFSLEQAEVFSQIALKAKKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++++ +S P  
Sbjct: 187 FLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNEMKESCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L        
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI---- 302

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
                  +  I   + P++GK+ MD     + D  + E GD + +FG    + +D   +A
Sbjct: 303 -------QVAINNQLAPLIGKVCMDQCFVKLNDIQAKE-GDEVILFGDKSARANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIPYETISTLSKRLERVY 376


>gi|154483679|ref|ZP_02026127.1| hypothetical protein EUBVEN_01383 [Eubacterium ventriosum ATCC
           27560]
 gi|149735589|gb|EDM51475.1| hypothetical protein EUBVEN_01383 [Eubacterium ventriosum ATCC
           27560]
          Length = 395

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 170/377 (45%), Gaps = 30/377 (7%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+  N   M   +        V+K + YG G   IA AL N  V  + V +  EG
Sbjct: 13  EVNLDAIIKNIEMMREKIKPETGIVGVIKTDGYGHGAVPIAKALENECVG-YAVATAWEG 71

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
             LR +     +++L G+ P    + +I +  L P+ +      F    +    +  + +
Sbjct: 72  HNLRRHGIDKPLYIL-GVVPENLCDLVINEEMLPPIFTYKMAKAFSDHAVKLNKTVKFNI 130

Query: 127 QVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            VDTG +R+G +  +EA++           ++    +H A AD         Q + +   
Sbjct: 131 AVDTGMSRIGYIPSEEAVNEVVEISKLPNVEIESAFTHFAKADYVDKSFAEKQFKEYNDF 190

Query: 186 IS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVVT 237
           I+    KG++  +   A+S+ ++  P     ++R GIS+YG   +++++K +  +   ++
Sbjct: 191 IAKVESKGVKIPIHQCANSAAMMEMPETSLTISRAGISMYGLYPSEEMDKDNMKLIPAMS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ ++    G  VSYG      +   IA   +GY DGYP  LS             
Sbjct: 251 IYSHVVYVKNIEKGRGVSYGQTFVADKPMTIATIPVGYGDGYPRNLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G    ILG++ MD  M D+T  + ++ GD + + G D    I +DD+A  +GT 
Sbjct: 300 GYVLINGKKCNILGRVCMDQFMVDVT-GMDVKEGDKVTLAGKDGSEEILIDDLAALAGTF 358

Query: 354 NYDLLVRIGTRYAKFYT 370
           NY+ +  +G R  + + 
Sbjct: 359 NYEFVCDLGKRVPRVFV 375


>gi|152964696|ref|YP_001360480.1| alanine racemase [Kineococcus radiotolerans SRS30216]
 gi|151359213|gb|ABS02216.1| alanine racemase [Kineococcus radiotolerans SRS30216]
          Length = 415

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 168/389 (43%), Gaps = 49/389 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+  N   +    G  +  AVVK +AYG G    A A    G     V  V E + 
Sbjct: 13  VDLDAIARNVAVVRERVGGPQVMAVVKADAYGHGLVPAARAALAGGATWLGVAHVHEALA 72

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-----SVPQLTFYSKLMSCGVSHPYA 125
           LR    +A +   + + PG       T+L+P +      SV  +    ++++   +    
Sbjct: 73  LRGAGVEADLLA-WILTPG-------TDLVPALRRGVDVSVAAVWALEEVVAAARASATT 124

Query: 126 ----LQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L+VDTG +R G S +E    LD           ++    +H A AD P       Q
Sbjct: 125 ARIHLEVDTGMSRGGASPEEWPALLDAVAGHVADGTVRVRGTWAHFASADVPGDPSVPAQ 184

Query: 179 LERFRTLI--SHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           L  F   +  +   G+E  L   A+S+  L  P   + L R G++ YG    ++ +  + 
Sbjct: 185 LAAFEAALGTARRHGVEPGLRHHANSAAALFVPQARYDLVRVGLAAYG----LSPAPDLA 240

Query: 234 T--------VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           T         +T +AR+  +R+   G  VSYG      RD+ + +  +GY DG P   S 
Sbjct: 241 TGADLGLVPAMTLQARLAHVRRVPRGAGVSYGLTYTAERDTTLGLVPLGYGDGLPRHAS- 299

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK--- 342
            D E S      G+  + G    I G++ MD  + D+ D  ++  G+   + GP  +   
Sbjct: 300 WDGERS------GEVLVAGARRRIAGRVCMDQVVLDLGDD-AVAPGEVAVVLGPGTRGEA 352

Query: 343 -LDDVALASGTTNYDLLVRIGTRYAKFYT 370
             DD A A+GT +++++ R+G R  + YT
Sbjct: 353 TADDWARAAGTISWEIVTRVGARVPRRYT 381


>gi|146743650|gb|ABQ43056.1| alanine racemase [Borrelia burgdorferi]
          Length = 352

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 152/346 (43%), Gaps = 31/346 (8%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 24  GEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 83

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P ++    L  +S    C +        L++D G NR G+ + +AL+
Sbjct: 84  KKEIKNLIKFELVPFVADFEYL--FSIEKECALQKNKIKVHLKIDIGMNRYGIKIDDALE 141

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  + SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 142 IATYIQNSKFLELEGVCSHLPSTENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 199

Query: 201 GILLGPNY----HFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGEL 253
           G ++  NY     F + RPG+ LYG         P    + V++  ++II I+    GE 
Sbjct: 200 GHII--NYKLSPQFNMVRPGLILYGYCQSPKNKKPALNFKPVLSLFSKIIFIKNVKKGEK 257

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           +SY G  +   D  I +  IGY DG P  +S      +   FL     I      I GK+
Sbjct: 258 ISYSGIFQAKEDMKIGIIPIGYFDGIPQNIS------NDFYFL-----INNKKCKIRGKV 306

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            M++ + +I   L ++ G  ++I    + +D+++  S  ++Y+LL 
Sbjct: 307 CMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLC 352


>gi|119963782|ref|YP_948596.1| alanine racemase [Arthrobacter aurescens TC1]
 gi|119950641|gb|ABM09552.1| alanine racemase [Arthrobacter aurescens TC1]
          Length = 417

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 170/397 (42%), Gaps = 69/397 (17%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+++N      ++  A   AVVK +AYG G  ++A A  +AG     V  + E + 
Sbjct: 29  IDLDAVRHNVRQFVGIASPAAVMAVVKADAYGHGAVQVARAALDAGAAWLGVAHISEALA 88

Query: 71  LRLYTPQARIFVLY---------GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           LR    +A +              +  G +  I    L  V+++  +    +++      
Sbjct: 89  LRAAGVEAPLLAWLHTRESNFQAAVAAGIDVGISGWELEAVVAAAREQERPARVH----- 143

Query: 122 HPYALQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
               L+VDTG  R G +       L +A+++      + +G    + SHLA AD+P    
Sbjct: 144 ----LKVDTGLGRNGCTIADWDQLLGQAMEYQDQGLLRVVG----VFSHLAVADEPERPE 195

Query: 175 NSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG------GT 223
              QL  FR  ++  +  G++     +A++   L  P+ HF L R G+ +YG       T
Sbjct: 196 TDEQLAVFREALAMAEDAGVDTEVRHIANTPAALSRPDSHFDLVRVGLGIYGLSPFDGAT 255

Query: 224 DKINKSHPMQTVVTAEARIIL--IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                 HP  TV     R +L   +K   G+ VSYG   +   +S + +  +GYADG   
Sbjct: 256 SAELGLHPAMTV-----RTLLSNCKKVPEGQGVSYGLNYRTIEESTLGLVPLGYADGV-- 308

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV-----GDYIQI 336
                     P +  GG   + G   P++G+I MD  + D+   LS E      G    +
Sbjct: 309 ----------PRIATGGPVRVNGINYPVVGRIAMDQMVIDL-GPLSPEAAAGLKGAEAVM 357

Query: 337 FGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
           FG         DD A A+GT NY+++ RI  R  + Y
Sbjct: 358 FGNGADGGPTADDWAAAAGTNNYEIVTRISPRVPRSY 394


>gi|15611943|ref|NP_223594.1| alanine racemase [Helicobacter pylori J99]
 gi|9789719|sp|Q9ZKQ9|ALR_HELPJ RecName: Full=Alanine racemase
 gi|4155452|gb|AAD06456.1| ALANINE RACEMASE [Helicobacter pylori J99]
          Length = 377

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 183/383 (47%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N++++ N +  +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTHSLRHNFNAVKNIVPKDACVMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  Q  I +L G  P     ++ D +L  ++ S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSQTPILIL-GYSPNTNASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD +  +H  + Q++ F 
Sbjct: 127 LKIDTGMHRLGLEPTFKSIETIKKIRALKGLEVEGIFTHLSNADSNIKTHAKN-QMKVFN 185

Query: 184 TLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP- 231
             +     + IE       +S+GIL       N    L RPGI LYG   ++++ +S   
Sbjct: 186 AFLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESSQT 245

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++ +ARI+ I++   GE + YG       ++L+ V A+GYADG    L       
Sbjct: 246 ILKNVISLKARIVQIKRVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI--- 302

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---V 346
                   +  I   + P++GK+ MD     + D +  + GD + +FG    K +D   +
Sbjct: 303 --------QVAINNQLAPLIGKVCMDQCFVKLND-IEAKEGDEVILFGDKSTKANDASEI 353

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T  Y+ +  +  R  + Y
Sbjct: 354 ATLLNTIPYETISTLSKRLERVY 376


>gi|329117453|ref|ZP_08246170.1| alanine racemase [Streptococcus parauberis NCFD 2020]
 gi|326907858|gb|EGE54772.1| alanine racemase [Streptococcus parauberis NCFD 2020]
          Length = 367

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 170/372 (45%), Gaps = 29/372 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           K++L A+K+N   + +     + A AVVK NAYG G  ++A A+ +  +  + V++++E 
Sbjct: 12  KVNLNAIKDNIKQVQSHIPTGKKAYAVVKANAYGHGAVEVAKAI-DPDIDAYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
           ++LR       I +L  I   Q  +  + N+   +SS+  L   +K     +S  +  L+
Sbjct: 71  LELRQAGITKEILILGIILADQLALAIENNVTLTVSSLEWLE-DAKQSGADLSKLHVHLK 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VD+G  R+G+      +    +   +   +  + +H A AD+ ++     QL  F  L+ 
Sbjct: 130 VDSGMGRIGVRSLSEANALIAALLAEDSHIDGVFTHFATADEANADKFKQQLHFFTELVE 189

Query: 188 --HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEAR 241
              +K      ++S+  L      F   R GI +YG    GTD ++  +P+   ++ E R
Sbjct: 190 SLDHKPALVHASNSATSLWHSETIFNAVRLGIVIYGLNPSGTD-LDLPYPLTAALSLETR 248

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ ++   AG+ V YG   +     ++    IGYADG+   + G       SV + G+  
Sbjct: 249 LVHVKTINAGDTVGYGATYQAKEAEVVGTIPIGYADGWTRDMQGF------SVLVDGQA- 301

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
                  I+G+++MD     +     I  G  + + G D    I   DVA   GT NY++
Sbjct: 302 -----CEIIGRVSMDQVTIRLPKVYPI--GTKVTLIGQDGSSVISATDVADKRGTINYEV 354

Query: 358 LVRIGTRYAKFY 369
           L  +  R  + Y
Sbjct: 355 LCVLSDRVPRKY 366


>gi|221134843|ref|ZP_03561146.1| alanine racemase [Glaciecola sp. HTCC2999]
          Length = 377

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 167/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID   L  N+  +N  S  + +   VVKD AYG G   IA A  +AG     V +++E
Sbjct: 14  VEIDHQQLLTNFELINQDSPAHLKKLCVVKDQAYGHGGVVIAKAARDAGYDYLAVETIDE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
            ++LR    +  I +   +   +        +   ++ + +   ++ L ++ G++H   +
Sbjct: 74  AIELRDAQIELPILIFGEVSDAEFAACLAYRITCCVNDIDKARRFNALCLAQGINHTVHI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++D+G +R G+   +A+        +  G  L  ++SH A +D+      ++Q  RF  +
Sbjct: 134 EIDSGMSRWGVRWSDAIPVIEYIARECDGLVLEGMMSHFAMSDEADKTYANLQHSRFVEV 193

Query: 186 ISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTA 238
           I   +  + +     ++++ G+L  P+ HF + R GI   G    +   +   ++ +++ 
Sbjct: 194 IEALEQTDITIPLIHMSNTGGLLDLPHAHFNMIRSGILHLGVYPSLVCKRIEGLKPIMSV 253

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A+I  +R+   G+ V YG     +    IA+  IGY DGY            P V   G
Sbjct: 254 KAQIPALRQLQVGDCVGYGMHFTASTPMQIAILPIGYGDGY------------PRVRNEG 301

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
              I G   P++G   MD  M D++   ++ +GD + + G      I   D+     T  
Sbjct: 302 YVLIHGQQCPVVGGNAMDAMMVDVSHLDNVSIGDEVVLMGGQGDEWIDPRDLVKWKKTVC 361

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++L     R  + Y 
Sbjct: 362 YEILTGWRARLPRRYV 377


>gi|262375688|ref|ZP_06068920.1| alanine racemase [Acinetobacter lwoffii SH145]
 gi|262309291|gb|EEY90422.1| alanine racemase [Acinetobacter lwoffii SH145]
          Length = 370

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 174/376 (46%), Gaps = 43/376 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL +N   +     N++  AVVK NAYG G E++  AL+  G   F    +EEG +
Sbjct: 9   IHQQALAHNLSVVRQCMPNSQVFAVVKANAYGHGIERVYAALH--GADGFAFLDIEEGTR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
           LR    +  + +L G+    +  +F+     +   I S  Q+ +  +         +   
Sbjct: 67  LRALGCKKPLLLLEGVFALTD--LFECAKHEMSFAIHSSHQVQWLKQFAEIVPDAQFDVF 124

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLE 180
           L++++G NRLG   Q+     +    ++L QL+ +     ++H + AD     ++ ++ +
Sbjct: 125 LKMNSGMNRLGFEPQQ-----YAEIWQELHQLNNVRSITHMTHFSDADGERFGLDGIEHQ 179

Query: 181 RF--RTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233
            F     I  ++G + SL++S+ IL      H  + R GI LYG +        +   +Q
Sbjct: 180 HFIFNKTIQGFEG-KTSLSNSAAILRHHQTLHSDIVRSGIMLYGSSPDYPTHTIQDWNLQ 238

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++  + II I+   AG+ + YG +   T+D  I + A GYADGY      L +  +P 
Sbjct: 239 PSMSLRSEIIAIQMIQAGQSIGYGSKFIATQDMRIGIVACGYADGY----QRLSATGTPV 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVAL 348
           +       +       LG+I+MDM   D+T     ++G  + ++G       + +D+VA 
Sbjct: 295 L-------VDSIKTQTLGRISMDMLAVDLTALPHADIGSEVVLWGQSSQGVILPIDEVAA 347

Query: 349 ASGTTNYDLLVRIGTR 364
           +SGT  Y+L+  +  R
Sbjct: 348 SSGTIGYELMCAVTAR 363


>gi|213617521|ref|ZP_03372347.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 186

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 15/181 (8%)

Query: 193 EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARIILIRKA 248
           + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +I +R  
Sbjct: 15  QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSLIAVRDH 74

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            AGE V YGG     RD+ + V A+GY DGYP          +PS   G    + G  VP
Sbjct: 75  KAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP--------RAAPS---GTPVLVNGREVP 123

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
           I+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L+ R+ +R A  
Sbjct: 124 IVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRLTSRVAMK 183

Query: 369 Y 369
           Y
Sbjct: 184 Y 184


>gi|317178709|dbj|BAJ56497.1| alanine racemase, biosynthetic [Helicobacter pylori F30]
          Length = 377

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 186/383 (48%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSTVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L Y  +P    +I D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILILGYSPNPNASMLI-DNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD +  +H  + Q++ F 
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEIEGIFTHLSNADSNIKTHAKN-QMKAFN 185

Query: 184 TLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP- 231
             +     + IE       +S+GIL       N    L RPGI LYG   ++ + ++ P 
Sbjct: 186 AFLEQLLNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPT 245

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +  
Sbjct: 246 ILKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRI 302

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---V 346
             +        I   + P++GK+ MD     + +++  + GD + +FG    K +D   +
Sbjct: 303 QVA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEI 353

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T  Y+ +  +  R  + Y
Sbjct: 354 AALLNTIPYETISTLSKRLERVY 376


>gi|331265917|ref|YP_004325547.1| alanine racemase [Streptococcus oralis Uo5]
 gi|326682589|emb|CBZ00206.1| alanine racemase [Streptococcus oralis Uo5]
          Length = 367

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 169/375 (45%), Gaps = 37/375 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N H M   +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  ICLEAIQQNIHQMGVHIPEGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP---YAL 126
           +LR      RI +L G+   + + I       +  +V  L +   L++ G         L
Sbjct: 72  ELRQARLSKRILIL-GV--SEIEAIGLAKEYDITLTVAGLEWVRALVATGADLSGLSVHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++D+G  R+G       +   +   +   ++  I +H A AD+ S    + QLERF+ ++
Sbjct: 129 KIDSGMGRIGFREASEAEQAQDLLKQHGARVEGIFTHFATADEESDTYFNNQLERFKAIL 188

Query: 187 SHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
           +  K + E   AS+S   L   +H    F   R G ++YG     + ++  + +   +T 
Sbjct: 189 ASMKEVPELVHASNSATTL---WHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLTPALTL 245

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+ ++ ++  LAG  + YG   +   + +IA   IGYADG+   +         SV + G
Sbjct: 246 ESALVHVKTVLAGACMGYGATYQADSEQIIATVPIGYADGWTRDMQNF------SVLVDG 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354
           +        PI+G+++MD     +     +  G  + + G     +I    VA   GT N
Sbjct: 300 QA------CPIVGRVSMDQITIRLPKVYPL--GTKVTLIGTNGDKEITATQVAAYRGTIN 351

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  +  R  + Y
Sbjct: 352 YEVVCLLSDRIPREY 366


>gi|226313784|ref|YP_002773678.1| alanine racemase [Brevibacillus brevis NBRC 100599]
 gi|226096732|dbj|BAH45174.1| alanine racemase [Brevibacillus brevis NBRC 100599]
          Length = 393

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 177/402 (44%), Gaps = 62/402 (15%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N+  R   ++++L A+K N  S+   +    +  AVVK NAYG G   +A      G   
Sbjct: 2   NQLFRETWIEVNLDAIKKNIQSIRRHIPKQTKIMAVVKANAYGHGSVGVARHALEYGATS 61

Query: 60  FFVTSVEEGVKLRL-----------YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ 108
             V  +EEG+ LR            +TP +R  V   I    E   F  + I     + +
Sbjct: 62  LAVAILEEGIVLRKAGIVAPILVLGFTPLSR--VKEAIAWNIELSAFQADWIKKADKIIK 119

Query: 109 LTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEAL-----DFTHNSFNKKLGQLSLIISH 163
            T ++  ++  ++      +DTG  RLG+  + AL       T +S     G    I +H
Sbjct: 120 STAFTNRLNIHIN------IDTGMGRLGVRTKSALLSVVTALTSSSSLAWTG----IFTH 169

Query: 164 LACADDPSSHVNSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGIS 218
            + AD+P   +   Q E F   + + K  G E     + +++  +  P Y   + R GI 
Sbjct: 170 FSTADEPDHTLTKAQHELFVQYLRYLKERGFELPTVHMCNTAATIAFPEYSADMIRLGIG 229

Query: 219 LYG--GTDKINKSHPMQTV--VTAEARIILIRKALAGEL-VSYGGQKKLTRDSLIAVAAI 273
           +YG   +  I + + ++ V  ++ ++R   ++  L     +SYG      R  +I    I
Sbjct: 230 MYGLYPSAYIRQLNRVKLVPALSLKSRFSYVKTMLTPPFTISYGATYIAKRGEVIGTVPI 289

Query: 274 GYADGYPLTLSGLDSEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVG 331
           GYADGY   LS              +GF+  +G  +PI G++TMD  M  + +  S + G
Sbjct: 290 GYADGYSRALS-------------NRGFVLYQGRRLPIAGRVTMDQMMVSLGEG-SGKQG 335

Query: 332 DYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D + I+G     +I +D++A   GT NY+++  +  R  + +
Sbjct: 336 DEVVIYGKQGNREIPVDEIAEMLGTINYEVVATLSNRIPRLF 377


>gi|326692928|ref|ZP_08229933.1| alanine racemase [Leuconostoc argentinum KCTC 3773]
          Length = 370

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 164/376 (43%), Gaps = 41/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++I   ALKNN   +   SG  +    VK NAYGLG    + A    GV    V  ++E
Sbjct: 10  QIEISQKALKNNVAVVKQTSGADKIFLAVKSNAYGLGLIPTSKAAIAGGVYGLAVAIIDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + LR     A I +L GI P Q  +++   +++ ++ S+  L   +  +S       +L
Sbjct: 70  ALALRHERLTAPILIL-GISPAQYAELMAVQHIMAMVVSLDWLKEAATYLSGEQRLHVSL 128

Query: 127 QVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            VDTG  R+G     +L EA+ +   H+     +G    + +H A +D  ++    +QL 
Sbjct: 129 GVDTGMGRIGFRDRAALAEAIAYVQAHHDLFDYVG----LATHFAESDSANTDYFEMQLA 184

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYG---GTDKINKSHPM 232
           R+  L       E    ++SG  +   YH       + R G  LYG      ++   H +
Sbjct: 185 RWHELTDGLPEPEYYHVANSGAAM---YHADEVPHDVIRVGTVLYGVEPSRGELADGHEL 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q V+   + I  +++  AGE +SY  +   T D  I    IGY DG+   L+G +     
Sbjct: 242 QPVMALRSEINFVKQLPAGEGISYSHKYTTTGDEWIGTVPIGYGDGWLRKLTGFNV---- 297

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                    + G   PI+G+I MD  M  +       VG  + + G D      L+DVA 
Sbjct: 298 --------IVDGQYAPIVGQIAMDQMMIRLPHEYP--VGTKVTLIGRDGGLENTLEDVAQ 347

Query: 349 ASGTTNYDLLVRIGTR 364
            +G   ++++  +  R
Sbjct: 348 YAGLAPWEIMTGMQDR 363


>gi|284042496|ref|YP_003392836.1| alanine racemase [Conexibacter woesei DSM 14684]
 gi|283946717|gb|ADB49461.1| alanine racemase [Conexibacter woesei DSM 14684]
          Length = 368

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 166/376 (44%), Gaps = 29/376 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  +DL A++ N   +   +  +    AVVK + YG G   +A A    G +   V + +
Sbjct: 6   RAHVDLGAVERNARRLRGCAAADVLLCAVVKADGYGHGAVAVARAALAGGARWLAVATAD 65

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E V LR   P+  I VL  +               V++  P+    ++ ++        +
Sbjct: 66  EAVALRRELPEPPILVLGALDEPDLARALGVG-ADVVAWTPEFVRCAEALAGNGGARLHV 124

Query: 127 QVDTGFNRLGL-SLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRT 184
           +VDTG  RLG  S +EAL       ++  G +L  +++H A AD   +H  + QL  F  
Sbjct: 125 KVDTGMGRLGARSREEALALA-ELIDRVAGVRLCGVMTHFATADAGDAHF-AAQLASFSA 182

Query: 185 LI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237
           +     + + G+    A+S+ +L  P  HF + R G++LY G D   +   +  ++  + 
Sbjct: 183 IAGVVRARHPGVLVHAANSAAVLRAPAAHFDMVRCGVALY-GLDPFQRDPAAARLEPALE 241

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  + +   GE V YG + + +  + +A   IGYADG   T  G        V +G
Sbjct: 242 LRSYVARVARVEPGEAVGYGARFRPSAPTWVATVPIGYADGVRRTTGG-----GVDVLIG 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353
           G+        P+ G ++MD    D      +  GD + + G      I  +++A   GT 
Sbjct: 297 GR------RRPLAGTVSMDSLGVDAGSHGDVRAGDEVVLIGARGRERILAEELAARHGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +G+R  + Y
Sbjct: 351 NYEVLCALGSRVERVY 366


>gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
 gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
          Length = 826

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 169/378 (44%), Gaps = 38/378 (10%)

Query: 9   LKIDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+ +N  W+  + L    +   ++K +AYG G  +IA  L +  V    V   +
Sbjct: 467 LEVNLNAVVDNLNWYR-SFLKPETKLVCMIKADAYGAGAAEIAKTLQDHRVDYLAVAVAD 525

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKL-MSCGVS-H 122
           EGV LR     + I ++   +P     K +FD +L P +     L    K     G++  
Sbjct: 526 EGVTLRKNGITSNIMIM---NPEMSSFKTLFDYDLEPEVYCFRLLDALVKAAQKEGITGF 582

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACAD-DPSSHVNS 176
           P  +++DTG +RLG   Q+ +D        +L   + II     SH   +D D     ++
Sbjct: 583 PVHIKLDTGMHRLGFDPQKDMD----ELISRLKHQNAIIPRSVFSHFVGSDADSFDDFSA 638

Query: 177 VQLERFRT----LISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q   F      L S +K  I   + +S+GI   P     + R G+ LYG   + NK   
Sbjct: 639 RQFALFEEGSGKLQSAFKHKIIRHMDNSAGIEHFPERQMDMCRLGLGLYGINPRTNKI-- 696

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  V T +  I+ +R   AG+ V Y  +  +  DSLIA   IGYADG    L    + H 
Sbjct: 697 INNVSTLKTTILQLRHVPAGDTVGYSRKGTVEHDSLIAAIPIGYADGLNRHLG---NRHC 753

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
             +  G K          +G I MD+ M D+T  +  + GD ++IFG  + +  ++    
Sbjct: 754 YCLVNGKKA-------AYVGNICMDVAMVDVT-GIDCKEGDSVEIFGDHLPVTVLSDVLD 805

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +  R  + Y
Sbjct: 806 TIPYEVLTTVSNRVKRVY 823


>gi|319790926|ref|YP_004152566.1| alanine racemase [Variovorax paradoxus EPS]
 gi|315593389|gb|ADU34455.1| alanine racemase [Variovorax paradoxus EPS]
          Length = 366

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 167/367 (45%), Gaps = 31/367 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +   AL+NN   +   + +AR  AVVK NAYG G E++   L   G   F +  + E  +
Sbjct: 9   VHTAALRNNLERVRRSALDARVWAVVKANAYGHGIERVYEGLR--GADGFALLDLAEAER 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +R    +  + +L G+   ++ ++    +L   +    Q+   +   +      + L+++
Sbjct: 67  VRALGWRGPVLLLEGVFDARDLELCSRLDLWHTVHCDEQIDMLAAHKTLKPQRVF-LKMN 125

Query: 130 TGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G NRLG + +     +T  +   ++ ++SL+ +H + AD      +  QLE F      
Sbjct: 126 SGMNRLGFTPERFGSAWTRLNALTQVDEISLM-THFSDADGARGIAH--QLEAFERATRD 182

Query: 189 YKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKI---NKSH-PMQTVVTAEARII 243
             G E S+A+S+  L           RPGI LYG        + +H  +Q  +T   +++
Sbjct: 183 LPG-ERSIANSAATLRHADQTRGDWVRPGIVLYGSAPDFPLHDAAHWQLQPTMTLSTQLL 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            ++   AG+ + YG          I VAA+GYADGYP         H  +   G    + 
Sbjct: 242 SVQTLKAGDTIGYGSNFTAEGPLTIGVAAVGYADGYP--------RHCNT---GTPVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALASGTTNYDL 357
           G    ++G+++MDM   D+T     + G  + ++G        + +D+VA A+GT  Y+L
Sbjct: 291 GVRTRMVGRVSMDMITVDLTPVPDAKFGAEVTLWGRSASTGAVLPIDEVAQAAGTVGYEL 350

Query: 358 LVRIGTR 364
           +  +  R
Sbjct: 351 MCAVAQR 357


>gi|297380139|gb|ADI35026.1| alanine racemase [Helicobacter pylori v225d]
          Length = 377

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 181/382 (47%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR Y  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSYFSKTPILIL-GYSPNANASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++ + ++ P  
Sbjct: 187 FLEQLLNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +   
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADG---LMRALGNRIQ 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
            +        I   + P++GK+ MD     + +++  + GD + +FG    K +D   +A
Sbjct: 304 VA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIPYETISTLSKRLERVY 376


>gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
 gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
          Length = 831

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 169/375 (45%), Gaps = 32/375 (8%)

Query: 9   LKIDLTAL-KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L+A+ KN  H  + +    +   ++K + YG G  +IA  L +  V    V   +E
Sbjct: 472 LEVNLSAVVKNLNHYRSFMKAETKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVADE 531

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-HP 123
           GV LR     + I ++   +P     K +FD +L P + S   L    K     G++ +P
Sbjct: 532 GVTLRRNGITSNIMIM---NPEMTAFKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGYP 588

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182
             +++DTG +RLG   ++ ++   +    +   +   + SH   +D+     +     +F
Sbjct: 589 VHIKLDTGMHRLGFDPRQDMERLIDRLRHQNAIIPRSVFSHFVGSDNDG--FDEFSARQF 646

Query: 183 RTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
                  K ++A+          +S+GI   P     + R G+ LYG   + N+   +  
Sbjct: 647 ALFDEGSKQLQAAFEHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGINPRNNEI--IHN 704

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V T +  I+ +R+  AG+ V Y  +  L  DS++A   IGYADG    LS   + H    
Sbjct: 705 VSTLKTTILQMRRVPAGDTVGYSRKTVLEHDSVVAAIPIGYADGLDRHLS---NRH---- 757

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              G   + G     +G I MD+ M D+T  +  + GD ++IFG  + +  ++    T  
Sbjct: 758 ---GYCLVNGQKAEYVGNICMDVAMIDVT-GIDCKEGDSVEIFGDHLPVTVLSDIVDTIP 813

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  I  R  + Y
Sbjct: 814 YEVLTGISNRVKRVY 828


>gi|212716821|ref|ZP_03324949.1| hypothetical protein BIFCAT_01760 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660106|gb|EEB20681.1| hypothetical protein BIFCAT_01760 [Bifidobacterium catenulatum DSM
           16992]
          Length = 524

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 176/408 (43%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNWHSMNALSG--NARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +D+ AL+NN   + ++ G  N+ TA   VVK +AYG G    A A    G          
Sbjct: 105 VDMAALRNNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGATWLGTAQSH 164

Query: 67  EGVKLRL--YTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FYSKLMSCGV 120
           E + LR     P  R  +L  ++ G       + D ++   + S+P +    +     G 
Sbjct: 165 EALLLRKAGIGPD-RCHILTWVYNGMAVPFDELIDNDIDISVGSLPGIDGVAAAARRLGK 223

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
           +    ++VD+GF R G        FT  +F+  L +L  +            SHLA AD 
Sbjct: 224 TARVHVKVDSGFGRNG--------FTPATFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 275

Query: 170 PS--SHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P     V S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 276 PDVPEFVASTDRQVENFKDFTRRMEVAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLY 335

Query: 221 GGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    +   +T +A++  ++   AG  +SYG       D+  A+  +GYA
Sbjct: 336 GYEADPAMGTPGTYDLTPAMTLQAQLGTVKDVEAGHGISYGRTYLTPTDTSTAIVPVGYA 395

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFIKGYMVPIL----GKITMDMTMFDI---TDSLSI 328
           DG   + SG D E +  V   GG   +     P L    G++ MD  M D+    + L +
Sbjct: 396 DGIHRSASGFDMEGAKHVIKPGGPVRVMTTEGPRLYRVSGRVCMDQFMLDLHGSAEKLGV 455

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +Q+FGP       +   DD   A+GT +Y++   +  R  + Y
Sbjct: 456 HEGDTVQLFGPGRGEDYAEPTADDWGRAAGTISYEIFTCLCNRIPRLY 503


>gi|41410356|ref|NP_963192.1| alanine racemase [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41399190|gb|AAS06808.1| Alr [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 391

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 179/384 (46%), Gaps = 46/384 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +  A+  AVVK + YG G  + A A   AG  +  V +V+E + 
Sbjct: 21  VDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATVDEALA 80

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQL-TFYSKLMSCGVSHPYA 125
           LR     A   VL  +HP    I F   L+  +    SS  QL    + +   G +    
Sbjct: 81  LRAAGISAP--VLAWLHP--PGIDFRPALLAGVQIGLSSQRQLDELLTAVRDTGRTATVT 136

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACADDPSSHVNSVQLER 181
           ++VDT  NR G+   +       +  + + + +++    +SH+  AD P++ VN VQ +R
Sbjct: 137 VKVDTRLNRNGVPPAQYPSML-TALRRAVAEEAIVPRGLMSHMVYADQPANPVNDVQAQR 195

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV- 235
           F  +++  +  G+    A L++SS  +  P+  F + RPGI++YG    + +   M  V 
Sbjct: 196 FTDMLAQAREQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYG-LSPVPELGDMGLVP 254

Query: 236 -VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +  + L++   AGE VSYG      RD+ +A+  +GYADG               +
Sbjct: 255 AMTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADG---------------I 299

Query: 295 F--LGGK--GFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDD 345
           F  LGG+    I G   P +G+I MD  + D+      +  GD   +FGP    +    D
Sbjct: 300 FRSLGGRLQVSINGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQD 359

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A   GT +Y+++     R  + Y
Sbjct: 360 WADLLGTIHYEVVTSPRGRITRTY 383


>gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
 gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
          Length = 842

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 167/389 (42%), Gaps = 46/389 (11%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           E L  K+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L    
Sbjct: 473 EELEKKVHETILEVNLGAMIANLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQEHH 532

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYS 113
           V    V   +EG +LR     A I ++   +P     K +FD  L P + S   L     
Sbjct: 533 VDYLAVAVADEGSELRKAGITASIIIM---NPEMTAFKTMFDYKLEPEVYSFHLLDALIK 589

Query: 114 KLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
           +    G+++ P  +++DTG +RLG + ++         ++       + SHL  +D  +S
Sbjct: 590 EAEKEGITNFPIHIKLDTGMHRLGFAPEDMPRLIERLKSQNAVIARSVFSHLVGSD--AS 647

Query: 173 HVNSV---QLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
             ++    Q+E F       +      I   + +S+GI   P   F + R GI LYG + 
Sbjct: 648 QFDAFTRGQIEMFEAASMQLQAAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGISP 707

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
             N    +  V T +  I+ IR+    + V Y  +  L RDS IA   IGYADG    L 
Sbjct: 708 IDNTI--INNVSTLKTTILQIREVPEEDTVGYSRKGHLKRDSRIAALPIGYADGLNRHL- 764

Query: 285 GLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                        G G     + G   P +G I MD+ M D+TD +  + GD ++IFG  
Sbjct: 765 -------------GNGHAYCLVNGQRAPYVGNICMDVCMIDVTD-IECKEGDIVEIFGDH 810

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +  ++    T  Y++L  + TR  + Y
Sbjct: 811 LPITVLSDVLETIPYEVLTSVSTRVKRVY 839


>gi|169630818|ref|YP_001704467.1| alanine racemase [Mycobacterium abscessus ATCC 19977]
 gi|169242785|emb|CAM63813.1| Alanine racemase [Mycobacterium abscessus]
          Length = 405

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 160/356 (44%), Gaps = 45/356 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+ +N   +   +G AR   VVK + YG G  ++A A   AG  +  VTS+ E ++
Sbjct: 27  IDLGAIAHNVKLLREHAGTARLMTVVKADGYGHGAVRVARAALAAGADELGVTSIAEALQ 86

Query: 71  LRLYTPQARIFVLYGIH-PGQE-KIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQ 127
           +R     A +     +H PG +       ++   +SS+ QL    +   S G     +++
Sbjct: 87  IRAAGLDAPLLAW--LHAPGADYAAALHADVEVAVSSLGQLGELLAAARSTGRQAITSIK 144

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL----IISHLACADDPSSHVNSVQLERFR 183
           VDTG NR G+      D    +  K   + S+    I+SH A AD P      +Q+ RF 
Sbjct: 145 VDTGLNRNGVPAGYTRDL-FEALAKAQAEESIRLRGIMSHFAYADQPGHPTVDMQIGRFN 203

Query: 184 TLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
             +   +G       A L++S+  L  P+  + + RPGI++YG    IN     ++  + 
Sbjct: 204 EALELARGFGLRYELAHLSNSAATLTRPDARYDMVRPGIAVYG----INPLGAAESATSN 259

Query: 239 EAR--------------IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
             R              +  ++   AGE VSYG      RD+  A+  IGYADG    L 
Sbjct: 260 RGRTSFDLIPAMSLTCAVSSVKPVSAGEGVSYGHVWTAPRDTNAALIGIGYADGVVRALG 319

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP 339
                +   V +GG+ +      P +G++ MD  + D+ D+   ++ GD   +FGP
Sbjct: 320 -----NRFEVAIGGRRY------PNIGRVCMDQFVVDLGDNDAGVQAGDVATLFGP 364


>gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485]
 gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485]
          Length = 811

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 169/372 (45%), Gaps = 27/372 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + +DLTA+ +N  ++   +G      V+K + YG G  ++A A   AG +   V +V EG
Sbjct: 451 VHLDLTAIADNVRALRHHTG-VPLMVVLKGDGYGHGAARVARAALAAGAEMVAVATVGEG 509

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
             LR     A I VL    P Q  E I  D  ++ +          +  +  G      +
Sbjct: 510 RSLRAQGISAPILVLGYTPPWQVAEAIRLDL-MVTLFDDDTAQALSAAALELGRPARVHI 568

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG  RLG+S      F +   +    +   + +H A AD+        QL+  +T++
Sbjct: 569 KVDTGMARLGVSPAAVGPFLYYLRDLPGIEPVGLYTHFARADEADPEPTKHQLQLLQTVL 628

Query: 187 SHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHP-MQTVVTAE 239
           +     G+   L   A+S+  L  P  +F + RPG++ YG     +    P M   ++  
Sbjct: 629 AEITAAGLRPPLVHAANSAATLRFPMTYFDMVRPGLACYGIAPSPVVPLLPGMHPALSFY 688

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  +R+  AG  +SYGG    +R S IA   +GYADG            SP+     +
Sbjct: 689 SEVAQVREHPAGTPISYGGAYVTSRPSRIATIPVGYADGL---------RRSPAWR---E 736

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G   PI+G+I MD  M D+TD   ++ GD + I G      I +D++A   GT +Y
Sbjct: 737 VLIRGRRAPIVGRICMDYAMVDVTDIPGVQRGDPVTIIGRQGEEVIGVDEIAGWLGTISY 796

Query: 356 DLLVRIGTRYAK 367
           ++L  I  R  +
Sbjct: 797 EVLTGILPRVPR 808


>gi|152974082|ref|YP_001373599.1| alanine racemase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022834|gb|ABS20604.1| alanine racemase [Bacillus cytotoxicus NVH 391-98]
          Length = 389

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 162/376 (43%), Gaps = 29/376 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL A+ NN   +  L   +    AVVK NAYG G   +A     AG     V  ++E
Sbjct: 12  VEVDLDAIYNNVTRIKELIRDDVEIFAVVKGNAYGHGYVPVAKTALEAGATRLAVAFLDE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR     A I VL    P    +  + ++   +     +    KL +  VS  + L 
Sbjct: 72  ALILRRAGITAPILVLGPSAPRDVNVAAEHDVTLTVFQKEWVEEAIKLWNSPVSMKFHLN 131

Query: 128 VDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            D+G  R+G+  +  L+ F  +  N    +   + +H A AD+  +     Q   F   +
Sbjct: 132 FDSGMGRIGIRERGELEGFLRSLENAPFLEFEGVYTHFATADEVETSYFDKQYNTFLEQL 191

Query: 187 SHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ--TVVT 237
           S  +  G+   L   A+S+  L      F   R GI++YG T  I  S   P+Q    ++
Sbjct: 192 SWLEKLGVSPRLVHAANSAATLRFHGITFNAVRIGIAMYGVTPSIEISPFLPIQLEAALS 251

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  I++ + G+ VSYG   +   +  IA   IGYADG+   L G            
Sbjct: 252 LHSTVAHIKQVMKGDGVSYGVTYQTRTEEWIATIPIGYADGWLRRLQGF----------- 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            K  + G  VPI+G++TMD  M  +   +S+  G  + + G      I   +VA  + T 
Sbjct: 301 -KVLVNGKRVPIVGRVTMDQLMLRLPYKVSL--GTKVTLIGKQGSEYIHAAEVAEYTSTI 357

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++     R  + +
Sbjct: 358 NYEIITTTSFRVPRIF 373


>gi|332528049|ref|ZP_08404082.1| alanine racemase [Rubrivivax benzoatilyticus JA2]
 gi|332112622|gb|EGJ12415.1| alanine racemase [Rubrivivax benzoatilyticus JA2]
          Length = 362

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 159/372 (42%), Gaps = 44/372 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           + + AL +N     A + +AR  AVVK NAYG G E+    L   G   F +  ++E  +
Sbjct: 9   VHVPALAHNLQRARAQAPDARVWAVVKANAYGHGIERAYDGLR--GADGFALLDLDEAER 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L G+  P   ++    +L   +    Q+ + +   +    H   L+++
Sbjct: 67  LRTLGWRGPILLLEGVFEPRDLELCSRLDLWHAVHCDEQIDWLAAHKT-HRPHRVFLKMN 125

Query: 130 TGFNRLGLSLQEALDFTHNSFN---KKLGQLSLI-----ISHLACADDPSSHVNSVQLER 181
           +G NRLG        FT  +F     +LG L  +     I+H + AD P    +  Q+  
Sbjct: 126 SGMNRLG--------FTPAAFRGAWARLGALPQVDEISAITHFSDADGPRGIAH--QIAA 175

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SH-PMQTVVT 237
           F        G E  L S+S  LL         R GI LYG      +   +H  +Q  +T
Sbjct: 176 FEAATQDLPG-ERCL-SNSAALLRHGVKNDWVRAGILLYGSAPDFPEHDIAHWDLQPTMT 233

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +RII  +   AG+ V YG          + + A GYADGYP                G
Sbjct: 234 LRSRIIATQTLAAGDTVGYGSSFTAPGPMRVGIVACGYADGYPRLCP-----------TG 282

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352
               + G     +G+++MDM   D+++     +G  + ++G       + +D+VA A+GT
Sbjct: 283 TPALVNGRRTRTIGRVSMDMLEVDLSELPDAGIGSEVTLWGRGPGGSVLPIDEVARAAGT 342

Query: 353 TNYDLLVRIGTR 364
             Y+L+  +  R
Sbjct: 343 IGYELMCAVAPR 354


>gi|260891454|ref|ZP_05902717.1| alanine racemase [Leptotrichia hofstadii F0254]
 gi|260858837|gb|EEX73337.1| alanine racemase [Leptotrichia hofstadii F0254]
          Length = 365

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 163/371 (43%), Gaps = 23/371 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I++  L +N   +  +    +  AV+K +AYG G  +I  AL   G+++F V + +E +
Sbjct: 6   EININNLYSNIDEIEKIVAKDKIIAVIKADAYGHGMLEICNALIKKGIKNFAVATSDEAL 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           K++       + +L  +      +I D N+  +++   ++ +  K     G +    +++
Sbjct: 66  KIKELHDDIMVLILGPVENEYMDLIADKNIYFMVTDFEEIEYLEKTGKEKGKTTDVFIKI 125

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-ISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG  R+G   QE+     N   K    ++ I I     + D       +Q  +F+ +  
Sbjct: 126 DTGMGRVG--FQESETEKLNEILKNASHINPIGIFSHFSSSDSDKDYTKLQESKFKAMCE 183

Query: 188 HY-KGIEA----SLASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSHPMQTVVTAEAR 241
               GI +     L +S G L   +      R GI LYGG T++    +  + V++  A+
Sbjct: 184 KISSGISSIKYRHLHNSFGTLKFQDSIEDFVRVGIILYGGVTEEETAPYKFKPVMSLFAK 243

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I  I+       +SYG   K       A  +IGYADG    LS             G  F
Sbjct: 244 ISYIKTLKEDSFISYGNTYKGKAGKTYATVSIGYADGVRRDLSN-----------KGYVF 292

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            KGY   I+G++ MD  +  + + L  E   GD ++ FG +I + +VA    T +Y+++ 
Sbjct: 293 YKGYKCEIVGRVCMDQLIILLPEELKNEAKKGDVVEFFGENISVVEVADLCNTISYEIMC 352

Query: 360 RIGTRYAKFYT 370
            I  R  + Y 
Sbjct: 353 GISQRVPRIYV 363


>gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
 gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
          Length = 831

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 169/375 (45%), Gaps = 32/375 (8%)

Query: 9   LKIDLTAL-KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L+A+ KN  H  + +    +   ++K + YG G  +IA  L +  V    V   +E
Sbjct: 472 LEVNLSAVVKNLNHYRSFMKAETKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVADE 531

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-HP 123
           GV LR     + I ++   +P     K +FD +L P + S   L    K     G++ +P
Sbjct: 532 GVTLRRNGITSNIMIM---NPEMTAFKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGYP 588

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182
             +++DTG +RLG   ++ ++   +    +   +   + SH   +D+     +     +F
Sbjct: 589 VHIKLDTGMHRLGFDPRQDMEQLIDRLRHQNAIIPRSVFSHFVGSDNDG--FDEFSARQF 646

Query: 183 RTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
                  K ++A+          +S+GI   P     + R G+ LYG   + N+   +  
Sbjct: 647 ALFDEGSKQLQAAFEHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGINPRNNEI--IHN 704

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V T +  I+ +R+  AG+ V Y  +  L  DS++A   IGYADG    LS   + H    
Sbjct: 705 VSTLKTTILQMRRVPAGDTVGYSRKTVLEHDSVVAAIPIGYADGLDRHLS---NRH---- 757

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              G   + G     +G I MD+ M D+T  +  + GD ++IFG  + +  ++    T  
Sbjct: 758 ---GYCLVNGQKAEYVGNICMDVAMIDVT-GIDCKEGDSVEIFGDHLPVTVLSDIVDTIP 813

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  I  R  + Y
Sbjct: 814 YEVLTGISNRVKRVY 828


>gi|317124143|ref|YP_004098255.1| alanine racemase [Intrasporangium calvum DSM 43043]
 gi|315588231|gb|ADU47528.1| alanine racemase [Intrasporangium calvum DSM 43043]
          Length = 387

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 166/376 (44%), Gaps = 27/376 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A ++N  ++ A + +++  AVVK + YG G   +A A   AG     V    E  
Sbjct: 15  EIDLDAFEDNVRTLRARAPHSQLMAVVKADGYGHGLLPVARAAVRAGADWLGVAQPTEAF 74

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL--TFYSKLMSCGVSHPYALQ 127
            LR      RI     + PG +        I V +S P           S G S    L+
Sbjct: 75  ALRDAGVTTRILTWLSV-PGTDFAGAVRRDIDVSASAPWTLDAIAGAARSEGRSARVHLK 133

Query: 128 VDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRT 184
           VDTG  R G           H    +  G +S+  I +H A AD P       Q + F  
Sbjct: 134 VDTGLGRGGAFGTDWPTLVEHARRLESEGAISVVGIWTHFAMADAPEHPTVLAQQDTFFE 193

Query: 185 LIS--HYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237
            ++     G+      LA+S+  L+ P  H  L RPGI++YG     ++     ++ V+T
Sbjct: 194 AVATAERAGVRPEVRHLANSAATLVHPAAHADLVRPGIAMYGLSPVPEVADDFGLRPVMT 253

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             AR+ L+++  AG  +SYG       D+++ +   GYADG P + + +    +P V +G
Sbjct: 254 LRARLALVKRWPAGRGISYGHVYAPEVDTVVGLVPAGYADGVPRSATNV----AP-VQVG 308

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK---LDDVALASGTTN 354
            +         I G++ MD  + D+    +   GD + +FG   +     D A A+ T +
Sbjct: 309 AR------RTTIAGRVCMDQFVVDLGPDSAAAAGDVVTLFGKPSEGPTAQDWADATETIS 362

Query: 355 YDLLVRIGTRYAKFYT 370
           Y+++ RIG R  + ++
Sbjct: 363 YEIVTRIGARVPRLWS 378


>gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
          Length = 828

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 164/386 (42%), Gaps = 40/386 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           E L  K+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L    
Sbjct: 459 EVLERKVHETILEVNLGAMIANLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQEHH 518

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYS 113
           V    V   +EG  LR     A + ++   +P     K +FD  L P + S   L     
Sbjct: 519 VDYLAVAVADEGSDLRKAGITASVIIM---NPEMTAFKTMFDYKLEPEVYSFHLLDALIK 575

Query: 114 KLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS- 171
           +    G+++ P  +++DTG +RLG + ++          +       + SH   +D P  
Sbjct: 576 EAEKEGITNFPIHVKLDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDAPQF 635

Query: 172 SHVNSVQLERFRT---LISH---YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225
                 Q+E F     L+     YK I   + +S+GI   P   F + R GI LYG    
Sbjct: 636 DAFTRKQIETFEKASMLLQEAFPYK-ILRHICNSAGIERFPGAQFDMVRLGIGLYG-ISP 693

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           I+ S  M  V T +  I+ IR     + V Y  +  L R S IA   IGYADG    L  
Sbjct: 694 IDNSI-MNNVSTLKTTILQIRDVPEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLG- 751

Query: 286 LDSEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
                       G+ +  + G   P +G I MD+ M D+TD +  + GD ++IFG  + +
Sbjct: 752 -----------NGRAYCLVNGQRAPYVGNICMDVCMIDVTD-IDCKEGDSVEIFGDHLPI 799

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
             ++    T  Y++L  + TR  + Y
Sbjct: 800 TVLSDVLETIPYEVLTSVSTRVKRIY 825


>gi|306829934|ref|ZP_07463121.1| alanine racemase [Streptococcus mitis ATCC 6249]
 gi|304427945|gb|EFM31038.1| alanine racemase [Streptococcus mitis ATCC 6249]
          Length = 367

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 170/375 (45%), Gaps = 37/375 (9%)

Query: 11  IDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M N +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRKNIQQMGNHIPKGTLKWAVVKANAYGHGAVAVATAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP---YAL 126
           +LR      +I +L G+   + + I       +  +V  L +   L++ G         L
Sbjct: 72  ELRQAGVSKKILIL-GV--SEIEAIDLAKDYDITLTVAGLEWIRVLLATGADLSGLSVHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++D+G  R+G       +   +   ++  ++  I +H A AD+ S    + QLERF+T++
Sbjct: 129 KIDSGMGRIGFREASEAEEAQDLLKQEGARVEGIFTHFATADEASDTYFNAQLERFKTIL 188

Query: 187 SHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
           S  K + E   AS+S   L   +H    F   R G ++YG     + ++  + +   ++ 
Sbjct: 189 SSMKEVPELIHASNSATTL---WHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLTPALSL 245

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV + G
Sbjct: 246 ESALVHVKTVPAGACMGYGATYQTDSEQIIATVPIGYADGWTRDMQNF------SVLVDG 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +        PI+G+++MD     +     +  G  + + G D    I    VA   GT N
Sbjct: 300 QA------CPIVGRVSMDQITIRLPKVYPL--GTKVTLIGSDGDKEITATQVATYRGTIN 351

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  +  R  + Y
Sbjct: 352 YEVVCLLSDRIPREY 366


>gi|172056530|ref|YP_001812990.1| alanine racemase [Exiguobacterium sibiricum 255-15]
 gi|171989051|gb|ACB59973.1| alanine racemase [Exiguobacterium sibiricum 255-15]
          Length = 352

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 166/357 (46%), Gaps = 39/357 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + ID  A+++N  S+ A S N +  AVVK+NAY LG  ++   L  AGV+ F V  V E 
Sbjct: 7   VTIDREAVRHNVASVFARS-NKQIFAVVKNNAYNLGMIEMVATLMEAGVRHFAVAEVYEA 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++++   P + +  +   +P  +    +  L  V   +P L + ++  +        L++
Sbjct: 66  IEIKTNFPDSYVLAM---NPASD--FKEVRLHGVALGIPSLDWLTRHQADLSGIELHLKI 120

Query: 129 DTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----- 182
           + G NR G+S L+EAL        ++L  L+ + +H   AD+P +  +  Q+ERF     
Sbjct: 121 NVGMNRFGVSSLEEALAVLETVREQEL-TLTGLYTHFPLADEPGADHDG-QVERFLEIGN 178

Query: 183 -----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
                 +    +    A++      L   NY     RPGI L+G +  I K   +   + 
Sbjct: 179 PLQAKHSFTYIHAENSATIVKHDPRLACCNY----VRPGIFLFGYS-PIEKMDWLVPSLR 233

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               ++ IR+  AGE V YG          +AV  +GY DG     S L       V + 
Sbjct: 234 MTTEVVEIRQVEAGEHVGYGTSYTAPTAIRVAVLPVGYGDGVVRGRSSL------PVIIN 287

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
           GK +      PI+ K+ M  T F   DS ++E+GD + ++G  I++DD+   +GT N
Sbjct: 288 GKRY------PIISKLFMSHT-FIAVDS-TVEIGDKVVLYGDGIEIDDIT-RTGTAN 335


>gi|120402493|ref|YP_952322.1| alanine racemase [Mycobacterium vanbaalenii PYR-1]
 gi|166969421|sp|A1T566|ALR_MYCVP RecName: Full=Alanine racemase
 gi|119955311|gb|ABM12316.1| alanine racemase [Mycobacterium vanbaalenii PYR-1]
          Length = 390

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 167/378 (44%), Gaps = 34/378 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+ +N   +   +G A   AVVK + YG G  ++A A   AG  +  V +V E + 
Sbjct: 20  IDLDAIAHNVAVLREHAGPAAVMAVVKADGYGHGATQVARAALAAGAAELGVATVGEALA 79

Query: 71  LRLYTPQARIFVLYGIHPG----QEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYA 125
           LR     AR  VL  +HP        ++ D ++   +SS+ Q T         G +    
Sbjct: 80  LRRDGVTAR--VLAWLHPPGTDFAPALLADVDV--AVSSLRQFTDLLDAAGRTGRTADVT 135

Query: 126 LQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++ DTG +R G+   +    +D    + +    ++  ++SHLA  DDP    N VQ  R 
Sbjct: 136 VKADTGLSRNGVGEADYPALVDALRRAASDGAVRVRGLMSHLAHGDDPEHPFNDVQARRL 195

Query: 183 RTL--ISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVV 236
             +  ++  +G+      L++S   L  P+  F + RPGI++YG T    +    ++  +
Sbjct: 196 TEMAKLAGARGVSYDVVHLSNSPAALTRPDLAFDMVRPGIAVYGQTPIPQRGDFGLRPAM 255

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  +  +R   AG+ VSYG       D+ +A+   GYADG       L +    S   
Sbjct: 256 TVKCPVSAVRPVRAGDAVSYGHTWTAQTDTTLALVPAGYADG---VFRALSNRFEVS--- 309

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
                I G   P +G+I MD  + D+    + +  GD   +FGP    +    D A    
Sbjct: 310 -----INGRRYPNVGRICMDQFVVDLGPGPVDVAEGDDAILFGPGTDGEPTAQDWAELLD 364

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++     R  + Y
Sbjct: 365 TINYEVVTSPRGRIVRTY 382


>gi|119715145|ref|YP_922110.1| alanine racemase [Nocardioides sp. JS614]
 gi|119535806|gb|ABL80423.1| alanine racemase [Nocardioides sp. JS614]
          Length = 378

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 174/378 (46%), Gaps = 34/378 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A++NN   +  ++G A +  VVK + YG G  + A A   AG +   V +++E   
Sbjct: 13  VDLAAIRNNVRRLREVTGVA-SMTVVKADGYGHGMLEAARAAREAGSEWLGVATLDEAAA 71

Query: 71  LRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           LR      R+     + PG++    I  D + +   S        + + + G      L+
Sbjct: 72  LRAAGDTGRVLTWLTV-PGEDYASAIAADVD-VTAYSPAELDEIAAGVRAAGRPARVQLK 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRT 184
           +DTG +R G ++++  D    +   +     +++ I SH AC+D+P    N+ Q   FR 
Sbjct: 130 IDTGLSRGGATVEQWPDLVAAARAGEEAGRWRVTGIWSHFACSDEPDHPANAAQETAFRH 189

Query: 185 L--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSH-PMQTV 235
              ++   G+      LA+S+  LL P+  F L R G++ YG       + ++   +   
Sbjct: 190 ALEVADRAGLRPEVRHLANSAAGLLRPSARFDLVRFGLASYGLDPAPGHLAEADLGLVPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +TA A ++L +   AG  VSYG        + + +  +GY DG P         H+    
Sbjct: 250 MTARAVLVLTKPLPAGAGVSYGHTWVADTPTSVGLVPVGYGDGIPRHA----GNHA---- 301

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
              +  + G    + G++ MD  + D+   L +E G  + +FGP    +  + + A A+G
Sbjct: 302 ---QVLVDGKRRAVRGQVCMDQFVVDLGGDL-LEPGHAVVLFGPGTAGEPTVQEWADAAG 357

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y+++ RIG R ++ Y
Sbjct: 358 TISYEIISRIGGRMSRRY 375


>gi|255007708|ref|ZP_05279834.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis 3_1_12]
          Length = 831

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 160/384 (41%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           +E L LK+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L   
Sbjct: 461 SEELELKVHETILEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEH 520

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
                 V   +EG  LR     A I ++        K +FD  L P + +   L    K 
Sbjct: 521 HADYLAVAVADEGSDLRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIKA 579

Query: 116 MSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-S 172
               G+++ P  +++DTG +RLG   ++         N+       + SH   +D P   
Sbjct: 580 AEKEGITNFPIHVKLDTGMHRLGFEEKDIPQLIRRLKNQNAVIPRSVFSHFVGSDSPQFD 639

Query: 173 HVNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q+ER+  + +  +      I   + +++GI   P   F + R GI LYG +   N
Sbjct: 640 AFTRQQIERYEHMSTELQEAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDN 699

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +  V T +  I+ IR     + V Y  +  L R S IA   IGYADG    L    
Sbjct: 700 SV--INNVSTLKTTILQIRDVAEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLG--- 754

Query: 288 SEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                     G G+  + G   P +G I MD+ M D+TD +    GD   IFG ++ +  
Sbjct: 755 ---------CGHGYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAVIFGDELPITV 804

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           ++    T  Y++L  I TR  + Y
Sbjct: 805 LSDTLDTIPYEVLTGISTRVKRVY 828


>gi|46200246|ref|YP_005913.1| alanine racemase [Thermus thermophilus HB27]
 gi|46197874|gb|AAS82286.1| alanine racemase [Thermus thermophilus HB27]
          Length = 361

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 172/369 (46%), Gaps = 34/369 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL AL  N+  +   +G      V+K +AYG G   +A  L   GV  F V ++EEG
Sbjct: 17  VEVDLAALWANYRLLAGRAGG-EVIPVLKADAYGHGALPLARFLEGKGVGRFAVATLEEG 75

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127
            +LR    +  + +L  +HP + +   +  L+P +S++      S +  + G+     L+
Sbjct: 76  RRLREGGIKGEVLLLGSLHPLEAEEALELGLVPTLSTLEAAEALSQRARALGLVPRAHLK 135

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VDTG NR+G   +EA         + LG ++  + +HLA A + ++ V + Q  RF+ + 
Sbjct: 136 VDTGMNRVGFPWEEAASALRAV--EALGVRVEGVYTHLATAGEDAAFVET-QRRRFQEVR 192

Query: 187 SHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
               +G    L +S G+L   +      R G++LYG    +     ++ ++   AR  L+
Sbjct: 193 RALGEGYFYHLENSLGLLR--HGATAGVRVGLALYG----LVPGFGLRPILRILARPTLV 246

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK-- 303
           ++  AG+ V YGG         +A   +GYADG P                G   F+K  
Sbjct: 247 KRLKAGDRVGYGGVYVARGGEWLATLPVGYADGLP---------------WGAVRFVKGP 291

Query: 304 -GYMVPILGKITMDMTMFDITDSLSIE-VGDYIQI-FGPDIKLDDVALASGTTNYDLLVR 360
            G ++ + G+I+MD T   +   + +E V + +   FGP   L   A A GT  Y++ V 
Sbjct: 292 DGRLLEVAGRISMDQTTVLLPGPVGLEAVFEVLSADFGP-TGLLAWAEARGTLPYEVAVH 350

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 351 LSRRLPRRY 359


>gi|289811326|ref|ZP_06541955.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 174

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 15/174 (8%)

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRKALA 250
           SL++S+  L  P  H+   RPGI LYG    G  +      ++ V+T  + II ++   A
Sbjct: 6   SLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLSSEIIGVQTLSA 65

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           GE V YGG   +T++  I + A GYADGYP         H+P+   G    + G     +
Sbjct: 66  GERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT---GTPVLVDGIRTRTV 114

Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y LL  +  R
Sbjct: 115 GTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLLCAVAPR 168


>gi|15613083|ref|NP_241386.1| alanine racemase [Bacillus halodurans C-125]
 gi|20137241|sp|Q9KFF9|ALR_BACHD RecName: Full=Alanine racemase
 gi|10173133|dbj|BAB04239.1| alanine racemase [Bacillus halodurans C-125]
          Length = 388

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 161/384 (41%), Gaps = 42/384 (10%)

Query: 9   LKIDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +++DL A++ N    NAL           AVVK N YG G  +++ A   AG     V  
Sbjct: 10  VEVDLDAIEQN--VTNALRLYKDREMNLMAVVKANGYGHGAVEVSQAALRAGASYLSVAF 67

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E + LR     A I V+  +     ++     +   +  +  L      +        
Sbjct: 68  LDEALALRKAGIDAPILVMGLVGAEHVQLAIKHRITLTVYQLDWLEQAISRLHTRDKLAI 127

Query: 125 ALQVDTGFNRLGLSLQE----ALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L++DTG  R+GL  +E     +DF  +H  F     +L  + +H A AD+        Q
Sbjct: 128 HLKLDTGMGRIGLRRKEDIRSCMDFIASHECF-----ELEGVFTHFATADEKDLTYFKKQ 182

Query: 179 LERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230
            +RF   + + +  +  +      +S+  L  P  +F + R GI++YG T     +    
Sbjct: 183 CQRFNQWLEYIREWQLPIRYVHCGNSAAGLRFPEKNFNMFRFGIAMYGLTPSPEITDELP 242

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            P++   + ++R+  ++K   GE +SYG          I    IGYADG+          
Sbjct: 243 FPLKQAFSLKSRLSNVKKLPKGEGISYGATYVTEGAEWIGTLPIGYADGWI-------RH 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
           HS +   GG   I G   P +G+I MD  M  +    SI  GD + + G      I +D+
Sbjct: 296 HSNA---GGHVLIDGKRAPFVGRICMDQCMIRLPKKHSI--GDTVTLIGESDGKQITMDE 350

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA    T NY++   I  R  + Y
Sbjct: 351 VAKRLNTINYEIPCVISWRVPRIY 374


>gi|261839727|gb|ACX99492.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori 52]
          Length = 377

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 179/382 (46%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSTVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKICALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++ + ++ P  
Sbjct: 187 FLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG   TL        
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRTLGNRI---- 302

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
                  +  I   + P++GK+ MD     + +++  + GD + +FG    K +D   +A
Sbjct: 303 -------QVAINNQLAPLIGKVCMDQCFVKL-NNIEAKEGDEVILFGDKSTKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIPYETISTLSKRLERVY 376


>gi|317014351|gb|ADU81787.1| alanine racemase [Helicobacter pylori Gambia94/24]
          Length = 377

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 184/384 (47%), Gaps = 36/384 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTHSLRHNFDAVKSIVPKDACVMAVVKANAYGAGALKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  ++ S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNTNASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD +  +H  + Q++ F 
Sbjct: 127 LKIDTGMHRLGLEPTFKSIETIKKIRALKGLEVEGIFTHLSNADANIKTHAKN-QMKAFN 185

Query: 184 TLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP- 231
             +     + IE       +S+GIL       N    L RPGI LYG   + ++ +S P 
Sbjct: 186 AFLEQLLNQKIEFKYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSSEMKESCPT 245

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++ +ARI+ I++   GEL+ YG       ++L+ V A+GYADG    L       
Sbjct: 246 ILKNVISLKARIVQIKRVKKGELIGYGKHFYTNEETLVGVLALGYADGLVRALGNRI--- 302

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---V 346
                   +  I   + P++GK+ MD     + +++  + GD + +FG    K +D   +
Sbjct: 303 --------QVAINNQLAPLIGKVCMDQCFVKL-NNIEAKEGDEVILFGDKSAKANDASEI 353

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A    T  Y+ +  +  R  + Y 
Sbjct: 354 ATLLNTIPYETISTLSKRLERVYV 377


>gi|221635562|ref|YP_002523438.1| alanine racemase [Thermomicrobium roseum DSM 5159]
 gi|221158172|gb|ACM07290.1| alanine racemase [Thermomicrobium roseum DSM 5159]
          Length = 433

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 158/380 (41%), Gaps = 35/380 (9%)

Query: 11  IDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL  L  N  ++   L  +    AV+K NAYG G    A A    G +   V  +EEG+
Sbjct: 44  IDLDQLATNARTLVRFLPPDVELLAVLKANAYGHGLVPSALAALAGGARWLGVARIEEGL 103

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQV 128
            LR     A + VL   +  + +     +L   + S+  +    S   + G      L+V
Sbjct: 104 LLRQAGLTAPVIVLGPPNHARLRAAVAADLTLAVGSLADVEAVRSAASALGRPARVHLEV 163

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG +R G +  EA+       +  L     I +H A AD P       Q+ERFR +   
Sbjct: 164 DTGMHRFGATPDEAVALARGLASDPLLSFEGIYTHFATADAPDCRTLRRQMERFRAVRER 223

Query: 189 Y--KGIEA-------SLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHP--MQTVV 236
              +GI         S A+  G L  P+    ++ R GI  YG T       P  ++  +
Sbjct: 224 LLAEGIHPPVVHQANSAATLRGALGDPDLPGRRVVRVGILFYGLTPDPALLLPPGIRPAL 283

Query: 237 TAEARIILIRKALAGELVSYGG---QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           T +AR+       AGE +SYG     K LT   L+ V   GYADG P  LS         
Sbjct: 284 TLQARLARCFVVHAGEGISYGHTYVTKALTHCGLVPV---GYADGLPRALSNQ------- 333

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
               G   ++G   PILG++ MD T   +      E+G  + + G      +   D A  
Sbjct: 334 ----GWFLVQGQRCPILGRVCMDQTTISLEAVPQAEIGTTVIVLGTGEDGAMTAWDAATL 389

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           SGT  Y++L  + TR  + Y
Sbjct: 390 SGTIAYEILTSLATRIPRLY 409


>gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 840

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 160/384 (41%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           +E L LK+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L   
Sbjct: 470 SEELELKVHETILEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEH 529

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
                 V   +EG  LR     A I ++        K +FD  L P + +   L    K 
Sbjct: 530 HADYLAVAVADEGSDLRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIKA 588

Query: 116 MSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-S 172
               G+++ P  +++DTG +RLG   ++         N+       + SH   +D P   
Sbjct: 589 AEKEGITNFPIHVKLDTGMHRLGFEEKDIPQLIRRLKNQNAVIPRSVFSHFVGSDSPQFD 648

Query: 173 HVNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q+ER+  + +  +      I   + +++GI   P   F + R GI LYG +   N
Sbjct: 649 AFTRQQIERYEHMSTELQEAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDN 708

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +  V T +  I+ IR     + V Y  +  L R S IA   IGYADG    L    
Sbjct: 709 SV--INNVSTLKTTILQIRDVAEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLG--- 763

Query: 288 SEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                     G G+  + G   P +G I MD+ M D+TD +    GD   IFG ++ +  
Sbjct: 764 ---------CGHGYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAVIFGDELPITV 813

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           ++    T  Y++L  I TR  + Y
Sbjct: 814 LSDTLDTIPYEVLTGISTRVKRVY 837


>gi|319442957|ref|ZP_07992113.1| hypothetical protein CvarD4_14474 [Corynebacterium variabile DSM
           44702]
          Length = 362

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 157/359 (43%), Gaps = 37/359 (10%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           M  L   A   AVVK +AY  G   +A    +AG  +  V ++ E + LR     A +  
Sbjct: 1   MAGLVAPAGVMAVVKADAYNHGMADVARTAVDAGAAELGVATLGEALALRDAGVSAPVTA 60

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQL----TFYSKLMSCGVSHPYALQVDTGFNRLGLS 138
              I     +   + ++   I S+  L    T  +     G      L VDTG +R G+S
Sbjct: 61  WIWIVGEDLRGAAEQDITLGIPSLAHLEAAVTTAAGSAEAGRPLKVGLMVDTGLSRSGIS 120

Query: 139 LQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH--YKGIE 193
             E   ALD    + +  L  ++ + SH A ADDP S    +Q +RF   I     +GI+
Sbjct: 121 PTEWPAALDAAEAAVDAGLIDVTGLFSHFASADDPMSPTTDLQEKRFSARIGECRARGID 180

Query: 194 AS---LASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPMQTVVTAEARIILIRKAL 249
           A    +A++   L   +   ++ RPG+ +YG     I     ++  +T  A+++  R   
Sbjct: 181 APVNHIANTPAALSRVDLRHEMVRPGVGIYGVDPCAIPSGVELRPAMTLRAKVVTTRIVE 240

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF---IKGYM 306
            GE VSYG       D   AV A+GYADG P  +SG               F   I G  
Sbjct: 241 KGEGVSYGHHWIAPEDHRTAVVAMGYADGLPRAMSG--------------NFGVAIDGTW 286

Query: 307 VPILGKITMDMTMFDI------TDSLSIEVGDYIQIFGPDIK-LDDVALASGTTNYDLL 358
            P +G++ MD  + D+          S+  GD+  IFG   + + ++A A+GT +Y++L
Sbjct: 287 YPQIGRVCMDQIVVDLGPVADEGPGASVRPGDWAVIFGEGGRSVREIADAAGTIDYEIL 345


>gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289]
 gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289]
          Length = 826

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 169/378 (44%), Gaps = 38/378 (10%)

Query: 9   LKIDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+ +N  W+  + L    +   ++K +AYG G  +IA  L +  V    V   +
Sbjct: 467 LEVNLNAVVDNLNWYR-SFLKPETKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVAD 525

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKL-MSCGVS-H 122
           EGV LR     + I ++   +P     K +FD +L P +     L    K     G++  
Sbjct: 526 EGVTLRKNGITSNIMIM---NPEMSSFKTLFDYDLEPEVYCFRLLDALVKAAQKEGITGF 582

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACAD-DPSSHVNS 176
           P  +++DTG +RLG   Q+ +D        +L   + II     SH   +D D     ++
Sbjct: 583 PVHIKLDTGMHRLGFDPQKDMD----ELISRLKHQNAIIPRSVFSHFVGSDADSFDGFSA 638

Query: 177 VQLERFRT----LISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q   F      L S +K  I   + +S+GI   P     + R G+ LYG   + NK   
Sbjct: 639 RQFALFEEGSGKLQSAFKHKIIRHMDNSAGIEHFPERQMDMCRLGLGLYGINPRTNKI-- 696

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  V T +  I+ +R   AG+ V Y  +  +  DSLIA   IGYADG    L    + H 
Sbjct: 697 INNVSTLKTTILQLRHVPAGDTVGYSRKGTIEHDSLIAAIPIGYADGLNRHLG---NRHC 753

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
             +  G K          +G I MD+ M D+T  +  + GD ++IFG  + +  ++    
Sbjct: 754 YCLVNGKKA-------AYVGNICMDVAMIDVT-GIDCKEGDSVEIFGDHLPVTVLSDVLD 805

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++L  +  R  + Y
Sbjct: 806 TIPYEVLTTVSNRVKRVY 823


>gi|16799958|ref|NP_470226.1| hypothetical protein lin0885 [Listeria innocua Clip11262]
 gi|20137216|sp|Q92DC9|ALR_LISIN RecName: Full=Alanine racemase
 gi|16413335|emb|CAC96117.1| lin0885 [Listeria innocua Clip11262]
          Length = 368

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 158/377 (41%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L       AVVK NAYG G  + A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPDKVALWAVVKANAYGHGIIETAKIAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    +    ++ G    ++  +   N I V       +  LT  + L        
Sbjct: 71  ALALREAGFRNEFILVLGATRKEDANLAAKNNISVTVFREDWLDDLTLEAPLR------- 123

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ S +EA              L  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRSREEAQRIETTIAIDHQMILEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           + ++S    +      A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QAILSSLTTRPTFVHTANSAASLLQPQIDFDAIRFGISMYGLTPSTEIKNSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                ++G   PI+G+I MD T+  +      + G  + I G D    +  DD A   GT
Sbjct: 296 ----LVEGERAPIIGRICMDQTIIKLPREF--QTGTKVTIIGSDHGNKVTADDAAEYLGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLTERIPRKY 366


>gi|218295810|ref|ZP_03496590.1| alanine racemase [Thermus aquaticus Y51MC23]
 gi|218243548|gb|EED10076.1| alanine racemase [Thermus aquaticus Y51MC23]
          Length = 361

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 31/367 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL AL  N+  + A +       V+K +AYG G   IA  L   GV  F V ++ EG
Sbjct: 8   IEVDLGALWANYLLLKARA-QGEVIPVLKADAYGHGALPIARFLEERGVGRFAVATIAEG 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
             LR    +  + +L  +HP + +      L P +S++      ++   + G++    L+
Sbjct: 67  RALREGGVRGEVLLLGSLHPLEAEAALRWGLTPTLSTLEAARALAERAWALGLTPRAHLK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERF-RTL 185
           VDTG NR+G   +EAL        + LG ++  + SHLA A +  + V  VQ  RF R  
Sbjct: 127 VDTGMNRVGFPWEEALAALRAV--EALGVRVEGVYSHLATAGEDEAFVE-VQRGRFQRVR 183

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +   G    L +S G+LL   +  +  R G++LYG    +     ++ V+   AR  L+
Sbjct: 184 EALGPGYFYHLENSYGLLL---HGGENARVGLALYG----LVPGFGLRPVLRLLARPTLV 236

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           ++  AG+ V YGG         +A   +GYADG P              F+ G G   G 
Sbjct: 237 KRLKAGDRVGYGGAFVAQGGEWLATLPVGYADGLP---------RGAVAFVRGPG---GE 284

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI---KLDDVALASGTTNYDLLVRIG 362
              + G+I+MD T   +     +++    ++  PD     L   A A GT  Y++ V + 
Sbjct: 285 RFRVAGRISMDQTTVLLPG--PVDLWAVFEVLSPDFGPTGLLAWAEARGTIPYEVAVHLS 342

Query: 363 TRYAKFY 369
            R  + Y
Sbjct: 343 RRLPRVY 349


>gi|312870262|ref|ZP_07730391.1| alanine racemase [Lactobacillus oris PB013-T2-3]
 gi|311094207|gb|EFQ52522.1| alanine racemase [Lactobacillus oris PB013-T2-3]
          Length = 374

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 158/382 (41%), Gaps = 45/382 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L AL  N  +  A L  +++  AVVK NAYG G   +A A   AG     V  ++E +
Sbjct: 13  INLRALGENIQAQKAALPADSKILAVVKANAYGHGLVPVAQAALRAGATGMCVAILDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA-- 125
           +LR         VL GI P +E  +  +  +   + S+  LT Y +         P    
Sbjct: 73  ELRDSGLDVITLVL-GITPVEEANVAAEAGVSLTVGSLDWLTKYHQFARQFNWKKPLKIH 131

Query: 126 LQVDTGFNRLGLSLQEALDFTH-NSFNKKLG--------QLSLIISHLACADDPSSHVNS 176
           L VDTG  R+G        FT+   FN+ +         +   + +H A AD        
Sbjct: 132 LAVDTGMGRIG--------FTNVAEFNQAVKILRRYPEFEFEGMFTHFATADSADHTYFD 183

Query: 177 VQLERFRTLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKS 229
            Q  R++  I     +        S++G+           R G+S+YG    GTD     
Sbjct: 184 RQYARWQKFIESLDELPPYTHMANSATGLWHRDQITANTIRMGLSMYGYNPSGTDLPEDL 243

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           H +Q V T  + I  ++K  AGE VSYG       D  +A   IGYADGYP  ++G    
Sbjct: 244 H-LQPVGTLRSSISFVKKLAAGESVSYGATYTAEHDEWLATVPIGYADGYPRCMTGF--- 299

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL--DDVA 347
                    K  + G   PI G++ MD  M  +     ++    +     D+ +  +++A
Sbjct: 300 ---------KVLVDGQYCPIAGRVCMDQMMVRLPKYYPVDTPVILMGRSGDLTITAEEMA 350

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             + T NY++L     R  + Y
Sbjct: 351 DQAQTINYEILTNFNNRIHRTY 372


>gi|28377409|ref|NP_784301.1| alanine racemase [Lactobacillus plantarum WCFS1]
 gi|254555592|ref|YP_003062009.1| alanine racemase [Lactobacillus plantarum JDM1]
 gi|300768938|ref|ZP_07078829.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179615|ref|YP_003923743.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|3913026|sp|O08445|ALR_LACPL RecName: Full=Alanine racemase
 gi|2190422|emb|CAA70140.1| alanine racemase [Lactobacillus plantarum]
 gi|28270241|emb|CAD63142.1| alanine racemase [Lactobacillus plantarum WCFS1]
 gi|254044519|gb|ACT61312.1| alanine racemase [Lactobacillus plantarum JDM1]
 gi|300493459|gb|EFK28636.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045106|gb|ADN97649.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 375

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 160/377 (42%), Gaps = 29/377 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ +DL A+K N  +  A         AVVK N YG G  ++A A   AG   F V  ++
Sbjct: 11  QVTVDLQAIKTNISNEMAQKDELTELWAVVKANGYGHGIIQVAQAAKEAGATGFCVAILD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHP-- 123
           E + LR       I VL    P    ++ + ++ + V +     T  + L +  V+ P  
Sbjct: 71  EALALRAAGFAEPILVLGITEPEYAPLVAEKDISLAVGTQDWLTTAAAILAANQVTTPLH 130

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLER 181
             L +DTG  R+G    E L     +  +         I +H A AD       + QL  
Sbjct: 131 VHLALDTGMGRIGFQTPEELATAVTTLRQPQSPFDFEGIFTHFATADQADDTYFTHQLNN 190

Query: 182 FRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
           ++ LI+    +     +++S+  L     +  + R G++LYG      +++  +P+Q  +
Sbjct: 191 WKHLIAVVDELPRYVHVSNSATSLWHQACNGNMVRFGVALYGLNPSGRELSAPYPLQPAL 250

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  AR+  +++   G+ VSYG      +D  I    IGYADGY   L G           
Sbjct: 251 SLTARLTFVKRLARGKSVSYGATYTAAQDEWIGTVPIGYADGYERRLQGFHV-------- 302

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G    I+G++ MD  M  +     + VG  + + G D    I L D+A   GT
Sbjct: 303 ----LVDGEFCEIVGRVCMDQLMVRLPH--EVPVGAKVTLVGTDGARTISLQDIADYCGT 356

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y++   +  R  + Y
Sbjct: 357 IHYEIACGLAPRVPRVY 373


>gi|291447101|ref|ZP_06586491.1| alanine racemase [Streptomyces roseosporus NRRL 15998]
 gi|291350048|gb|EFE76952.1| alanine racemase [Streptomyces roseosporus NRRL 15998]
          Length = 283

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 126/260 (48%), Gaps = 28/260 (10%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           L+ DTG  R G    +  +    + + ++ G L +  + SH ACAD+P     + QL  +
Sbjct: 22  LKADTGLGRGGCQPADWPELVGAARDAERAGHLRITGLWSHFACADEPGHPSIAAQLAVY 81

Query: 183 RTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM--Q 233
           R L+++ +  G++     LA+S   L  P  HF L R GI++YG     ++  S  +  +
Sbjct: 82  RDLVAYAEKEGVDPEVRHLANSPATLTIPEAHFDLVRTGIAMYGISPAPELGTSAELGLR 141

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  A + L++ A AG  VSYG       ++ + +  +GYADG P   SG     S  
Sbjct: 142 PVMTLAAAVALVKDAPAGHGVSYGHHYTTPAETTLGLIPVGYADGVPRHASG-----SGP 196

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
           V +GGK      +  + G++ MD  + D+ +    E G    +FGP    +    D A A
Sbjct: 197 VLVGGK------VRTVAGRVAMDQFVVDL-EGDRPEAGAEAVLFGPGDRGEPTAQDWAEA 249

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T  Y+++ RIG R  + Y
Sbjct: 250 ADTIAYEIVTRIGARVPRVY 269


>gi|322506310|gb|ADX01764.1| dadX [Acinetobacter baumannii 1656-2]
          Length = 367

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 165/381 (43%), Gaps = 56/381 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  +EE  +
Sbjct: 9   IHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDLEEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +R       I +L G+   Q+  +FD     L   I S  Q+ +  +       HPY  Q
Sbjct: 67  IRALGWTGPILLLEGVFSPQD--LFDCVQYQLSFTIHSEAQIEWVEQ-------HPYPAQ 117

Query: 128 VD------TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSV-- 177
            D      +G NRLG   Q  +       N  L  +S I  ++H + AD        +  
Sbjct: 118 FDVFLKMNSGMNRLGFKPQNYVQAWERLNN--LANVSKITHMTHFSDADADRFGQQGIDY 175

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP-- 231
           Q+  F  ++    G E S+++S+ IL    Y  QL     R GI LYG +     +H   
Sbjct: 176 QITAFEEIVRDLPG-ERSVSNSAAIL---RYQDQLKSDYARSGIMLYGSSPDY-PTHSIA 230

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +Q  ++  + II ++     E V YG      +   I + A GYADGY         
Sbjct: 231 DWGLQPTMSLRSEIIAVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGY--------Q 282

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKL 343
             SP+   G    +       +G+++MDM   D+T   S +VG  + ++G       + +
Sbjct: 283 RISPT---GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPI 339

Query: 344 DDVALASGTTNYDLLVRIGTR 364
           DDVA++SGT  Y+L+  +  R
Sbjct: 340 DDVAVSSGTVGYELMCAVTAR 360


>gi|332184182|gb|AEE26436.1| Alanine racemase [Francisella cf. novicida 3523]
          Length = 365

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 165/379 (43%), Gaps = 40/379 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           L+I++  L+NN   +    GN R    VK NAYG G E I    ++  + DFF V +V E
Sbjct: 4   LEINIQTLRNNIKLIKEYVGNVRICFPVKANAYGHGLELIVQ--HSHDLVDFFAVANVLE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
             ++ L   Q  + +   I       I   N+   I     +    K        P+  +
Sbjct: 62  AFRV-LDVVQKPVMIFGVIEYNYIDRILSKNIRVSIQDYNDIEKLEKFAKYYNKKPFVHV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            ++TG NR+G+   +A      +F      L  + SHLACAD+     N  Q  RF +++
Sbjct: 121 NINTGMNRMGVDYNDACRTIQKAFESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIV 180

Query: 187 SHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHPMQTVV 236
              K     I   L++S G L      + + RPGI  YG       D+ I +  P+  ++
Sbjct: 181 EFTKELSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLI 240

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   +II +++   GE V Y    +      +AV  IGY DG+P               L
Sbjct: 241 SEVVKIITLQE---GEGVGYSLIYRGYEGEQLAVIPIGYGDGFPRE-------------L 284

Query: 297 GGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLD-----DVAL 348
           G +GF  I   M P+ G+++MD +T+    +   ++VGD +++   DI  +      +A 
Sbjct: 285 GDRGFVNINDVMYPMAGRMSMDGLTVSLGINENDVKVGDIVELIS-DIPRNRNSAFSIAK 343

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            + T  YD++  +  R  +
Sbjct: 344 QTNTIEYDIMSTLNDRVIR 362


>gi|239943637|ref|ZP_04695574.1| putative alanine racemase [Streptomyces roseosporus NRRL 15998]
          Length = 284

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 126/260 (48%), Gaps = 28/260 (10%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           L+ DTG  R G    +  +    + + ++ G L +  + SH ACAD+P     + QL  +
Sbjct: 23  LKADTGLGRGGCQPADWPELVGAARDAERAGHLRITGLWSHFACADEPGHPSIAAQLAVY 82

Query: 183 RTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM--Q 233
           R L+++ +  G++     LA+S   L  P  HF L R GI++YG     ++  S  +  +
Sbjct: 83  RDLVAYAEKEGVDPEVRHLANSPATLTIPEAHFDLVRTGIAMYGISPAPELGTSAELGLR 142

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  A + L++ A AG  VSYG       ++ + +  +GYADG P   SG     S  
Sbjct: 143 PVMTLAAAVALVKDAPAGHGVSYGHHYTTPAETTLGLIPVGYADGVPRHASG-----SGP 197

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
           V +GGK      +  + G++ MD  + D+ +    E G    +FGP    +    D A A
Sbjct: 198 VLVGGK------VRTVAGRVAMDQFVVDL-EGDRPEAGAEAVLFGPGDRGEPTAQDWAEA 250

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T  Y+++ RIG R  + Y
Sbjct: 251 ADTIAYEIVTRIGARVPRVY 270


>gi|254852379|ref|ZP_05241727.1| alanine racemase [Listeria monocytogenes FSL R2-503]
 gi|258605686|gb|EEW18294.1| alanine racemase [Listeria monocytogenes FSL R2-503]
          Length = 336

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 150/351 (42%), Gaps = 36/351 (10%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK NAYG G  ++A     AG + F V  ++E + LR    Q    ++ G    ++  
Sbjct: 5   AVVKANAYGHGIIEVARTAKEAGAKGFCVAILDEALALREAGFQDDFILVLGATRKEDAN 64

Query: 94  IFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYA--LQVDTGFNRLGL-SLQEALDFTHN 148
           +   N I        LT + +  L    +  P    L+VD+G  RLG+ +  EA      
Sbjct: 65  LAAKNHI-------SLTVFREDWLEDLTLEAPLRIHLKVDSGMGRLGIRTTDEARRIETT 117

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL--ASSSGILLGP 206
                  QL  I +H A AD   +     QL +F+T+++  K     +  A+S+  LL P
Sbjct: 118 IAKDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILTSLKNRPTYVHTANSAASLLQP 177

Query: 207 NYHFQLTRPGISLYGGT--DKINKSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKL 262
              F   R GIS+YG T   +I  S P  ++  +     ++ +++   G+ VSYG     
Sbjct: 178 QIGFDAIRFGISMYGLTPSTEIKTSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTA 237

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
           T    +A   IGYADG     SG                + G + PI+G++ MD T+  +
Sbjct: 238 TEREWVATLPIGYADGLIRHYSGFHV------------LVDGELAPIIGRVCMDQTIIKL 285

Query: 323 TDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
                 + G  + I G D    I  DD A    T NY++   +  R  + Y
Sbjct: 286 PREF--QTGSKVTIIGTDHGNTITADDAAHYLDTINYEVTCLLNERIPRKY 334


>gi|227497232|ref|ZP_03927472.1| alanine racemase [Actinomyces urogenitalis DSM 15434]
 gi|226833280|gb|EEH65663.1| alanine racemase [Actinomyces urogenitalis DSM 15434]
          Length = 441

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 178/415 (42%), Gaps = 71/415 (17%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL +N   + + +G A  A VVK +AYG G E +A    +AG     V  ++E + 
Sbjct: 38  IDLEALAHNARVLASKAGRAWMA-VVKADAYGHGIEAVARTCLDAGASWLGVAQLDEALH 96

Query: 71  LR-------------------LYTPQARIFVLYGIHPGQ---------EKIIFDTNLIPV 102
           LR                      P+   +++  + P Q         E +  D +L   
Sbjct: 97  LRGLLDAAGVARPRSADEPASSQAPRLLCWLVPVLSPQQAAREGSPLWEALAGDLDL--S 154

Query: 103 ISSVPQL-TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLI 160
           +S++ QL        + GV     ++VDTG +R G  L++       +   +  G++ ++
Sbjct: 155 VSTLTQLQAVRVAARAQGVVARIHVKVDTGMSRAGAVLEDLPALAREARAAQDAGEVDVV 214

Query: 161 --ISHLACADDPSSHVNSVQLERFR--TLISHYKGIEAS---LASSSGILLGPNYHFQLT 213
              SHL+ AD+P S      L RFR    I +  G+      L+++ G+   P+    L 
Sbjct: 215 GLWSHLSRADEPDSGSTEDHLARFRRGEQILNQAGLHPGVRHLSATGGLEWHPHARLDLV 274

Query: 214 RPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
           R GI LYG + +     ++   ++ V+  +A ++ +++  AG+ VSYGG      D  + 
Sbjct: 275 RIGIGLYGFSPEPAVATSQELGLRPVMRLQAPLVQVKRIPAGQAVSYGGTWSAPTDRWVG 334

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI---TDS- 325
           +  +GY DG P   +             G  ++ G    ++GK+ MD  + D+   TD+ 
Sbjct: 335 LVPLGYGDGIPRAAAST-----------GPVWVAGRRTTVVGKVCMDQVVIDLGPATDAA 383

Query: 326 -----LSIEVGDYIQIFG-PD------IKLDDVALASGTTNYDLLVRIGTRYAKF 368
                     GD   ++G PD         +D A    T +Y++L R+G R  + 
Sbjct: 384 GSPLPAPAAAGDRAIVWGDPDRDGEGVPTAEDWARVCSTISYEILTRLGPRVPRV 438


>gi|282880769|ref|ZP_06289465.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
 gi|281305303|gb|EFA97367.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
          Length = 824

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 169/375 (45%), Gaps = 32/375 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   +L     +   ++K +AYG G  ++A  L +  V    V   +E
Sbjct: 465 LEVNLNAIVDNLNYYRSLLKHGTKLVCMIKADAYGAGAVEVAKTLQDHRVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-HP 123
           GV LR     A I V+   +P     K++FD +L P + S   L    K     G++ +P
Sbjct: 525 GVTLRKNGITANIMVM---NPEMSSFKMLFDYDLEPEVYSFRLLDALVKAAEKEGITDYP 581

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182
             +++DTG +RLG   Q+ +    +   ++   +   + SH   +D       S Q  +F
Sbjct: 582 VHIKLDTGMHRLGFDPQKDMQTLISRLKRQNAIIPRSVFSHFVGSDSDDFDSFSAQ--QF 639

Query: 183 RTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
                  K ++A+        + +S+GI   P     + R G+ LYG   + N+   +  
Sbjct: 640 ALFDEGSKLLQAAFTHKIIRHMDNSAGIEHFPERQLDMCRLGLGLYGINPRTNQV--IHQ 697

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V T    I+  R+  AG+ V Y  +  +  DS+IA   IGYADG    L    + H    
Sbjct: 698 VSTLRTTILQKREVKAGDTVGYSRKGTIAHDSVIAAIPIGYADGLNRRLG---NRH---- 750

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              G   + G   P +G I MD+ M D+T  +  + GD ++IFG  + +  ++    T  
Sbjct: 751 ---GYCLVNGQRAPYVGNICMDVAMIDVT-GIDCKEGDRVEIFGEHLPVTVLSDILETIP 806

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  +  R  + Y
Sbjct: 807 YEVLTSVSNRVKRVY 821


>gi|225020515|ref|ZP_03709707.1| hypothetical protein CORMATOL_00522 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946904|gb|EEG28113.1| hypothetical protein CORMATOL_00522 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 378

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 161/352 (45%), Gaps = 34/352 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L   IDL A+  N   +  L   A+   VVK + Y  G   +A  +   G     V ++
Sbjct: 6   LLETVIDLDAIATNTRILKNLVQPAQLMCVVKADGYNHGAIPVARTVLANGADQLGVATL 65

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHP 123
            E ++LR  +  A I   +   P Q+     D N+ + V+S    +     ++      P
Sbjct: 66  AEALELREASITAPILC-WIWSPEQDFAAALDANIHLAVVS----MAHAQAIVKYAAGKP 120

Query: 124 YAL-----QVDTGFNRLGL--SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHV 174
             L     ++DTG +R G+  S  EA+           G + +  ++SHLACAD+P +  
Sbjct: 121 EKLVQTTIKIDTGLHRSGVDESQWEAVFTLLKDAGTATGNIEVTGVMSHLACADEPGNPA 180

Query: 175 NSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKIN-K 228
           N  Q   F   I+  +  G+E S   L++S  +L  P+++ ++ RPG+++YG +   +  
Sbjct: 181 NDTQAAAFNRAIALGRQLGLELSVNHLSNSPAVLTRPDFYHEMVRPGLAVYGYSPLADGN 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
            + +Q  ++   ++ +++    GE  SY    +  +   +AV   GYADG P       +
Sbjct: 241 DYGLQPAMSWVGKVTVVKPIEPGEGTSYNLTWRAAKPGYLAVIPAGYADGLPRR-----A 295

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP 339
           ++   V +GG  +      P +G+I MD  + D+ D+  ++  GD   IFGP
Sbjct: 296 QNHVEVTIGGHRY------PQVGRICMDQFVIDLGDNPHNVRPGDEAIIFGP 341


>gi|326315128|ref|YP_004232800.1| alanine racemase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371964|gb|ADX44233.1| alanine racemase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 369

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 165/385 (42%), Gaps = 53/385 (13%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  I   AL+ N     A + +AR  AVVK NAYG G E+    L   G   F +  + 
Sbjct: 5   IRATIHTAALQQNLARARAATPDARVWAVVKANAYGHGIERAFEGLR--GADGFALLDLG 62

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++R    +  I +L G+  P   ++    +L  V+    Q+ + S   +    H   
Sbjct: 63  EAERVRQLGWRGPILLLEGVFEPRDLELCSRLSLWHVVHCDEQIDWLSAHKT-HAPHRVF 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLE 180
           L++++G NRLG          + +   +L  L  +     ++H + AD P    +  Q+E
Sbjct: 122 LKMNSGMNRLGFPPAR-----YRAAWARLNALPQVDEISFMTHFSDADGPRGIAH--QIE 174

Query: 181 RFRTLISHYKGIEASLASSSGIL--LGPNYHFQ--LTRPGISLYGGTDKINKSHPMQTV- 235
            F T      G E ++++S+  L   G +   +    R GI LYG        HP  T  
Sbjct: 175 AFCTATQDLPG-ERTVSNSAATLRHAGGDARVRGDWVRAGIVLYGSA----ADHPEHTAA 229

Query: 236 -------VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
                  +T  ARII  ++  AG+ V YG      R   I V A GYADGYP        
Sbjct: 230 HWGLAPTMTLSARIIGTQQLQAGDTVGYGSSFTADRPLAIGVVACGYADGYP-------- 281

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD----SLSIEVGDYIQIFGPD---- 340
            H+P+   G    + G     +G+++MDM   D++      +   VG    ++G      
Sbjct: 282 RHAPT---GTPVLVNGVRTRTVGRVSMDMITVDLSPLHEAGVEAGVGSEATLWGRASCGA 338

Query: 341 -IKLDDVALASGTTNYDLLVRIGTR 364
            + +DDVA  +GT  Y+L+  +  R
Sbjct: 339 VLCIDDVAQPAGTVGYELMCALAPR 363


>gi|255308493|ref|ZP_05352664.1| alanine racemase [Clostridium difficile ATCC 43255]
          Length = 385

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 171/379 (45%), Gaps = 38/379 (10%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  L+ N +++ N L  + +   V+K +AYG G  ++A  L    V    V    EG
Sbjct: 11  EINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVARTAEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           ++LR       I  L G  P +  E  I +   + V S            S G      +
Sbjct: 71  IELRQNGITLPILNL-GYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKACVHV 129

Query: 127 QVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQL 179
           ++D+G  R+G      S+QE ++        KL  + L  + +H A AD+ S      Q 
Sbjct: 130 KIDSGMTRIGFQPNEKSVQEIIELN------KLEYIDLEGMFTHFATADEVSKEYTYKQA 183

Query: 180 ERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSH-P 231
             ++ +       G++ ++   ++S+ I+  P+    + R GI LYG   +D + K    
Sbjct: 184 NNYKFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLE 243

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +  +++I  I++   G  +SYG +   T    IA   IGYADG+         + +
Sbjct: 244 LRPAMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTRI------QKN 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALAS 350
           P V       IKG +  ++G+I MD  M  I   + I+VGD + +FG  ++  + +A   
Sbjct: 298 PKVL------IKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGEGEVTAERIAKDL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 352 GTINYEVLCMISRRVDRVY 370


>gi|310640776|ref|YP_003945534.1| alanine racemase [Paenibacillus polymyxa SC2]
 gi|309245726|gb|ADO55293.1| Alanine racemase [Paenibacillus polymyxa SC2]
          Length = 398

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 168/382 (43%), Gaps = 31/382 (8%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R +I+L  L  N+ +    L  +      VK NAYG G  +I+  +   G     V  ++
Sbjct: 9   RAEINLDHLGANYEAFRKVLPADKLILVCVKANAYGHGAVEISKEMERLGADYLSVAFLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    +  I VL    P   +  ++ ++   + S   L    +L   G       
Sbjct: 69  EALELRHAGIELPILVLGYTSPEAVQTAWEHDISLTVFSEEVLEGIRRLDRQGSERKLKV 128

Query: 126 -LQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            +++D+G  RLGL   EA L F   +   +   L  + +H A AD+       +Q +RFR
Sbjct: 129 HIKIDSGMGRLGLLPGEAALAFVRQAHELEQVLLEGMYTHFARADEEDKSYTLLQYDRFR 188

Query: 184 TLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTV 235
            +      +GI   +    +S+  +  P+    + R GIS+YG   +D++N+    +  V
Sbjct: 189 GVADALREQGITIPIIHTGNSAATIDTPSLSPNMVRIGISIYGLYPSDEVNRQVIELLPV 248

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ +  ++  +    G  VSYG +   + +  I    IGYADGY   LSG          
Sbjct: 249 LSLKTAVVYTKTLPPGWGVSYGTRYVTSSEERIGTLPIGYADGYSRMLSG---------- 298

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD----IKLDDVA 347
              +  I+G  VP+LG I MD  M  +     D+  I+ G+ + + G      I  D++A
Sbjct: 299 -KVEVLIRGRRVPVLGTICMDQCMVSLQSFAEDAEEIQTGEEVVLIGQQSGEIIAADELA 357

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT +Y+++  I  R  + Y
Sbjct: 358 SKLGTIHYEVICMIADRVPRVY 379


>gi|291541767|emb|CBL14877.1| alanine racemase [Ruminococcus bromii L2-63]
          Length = 394

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 153/372 (41%), Gaps = 53/372 (14%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AV+K + YG G E +A  +Y  G+  F V+S+EE    R     A +  L+ +H  +   
Sbjct: 32  AVLKGDGYGHGME-VANEMYKNGINYFAVSSLEEAQSFRKVNKDAPLLCLHPVHLSR--- 87

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQVDTGFNRLGLSLQEALDFTHNSFN 151
           I +   + +  +V +L +  +L+   +   +   LQ+DTGFNRLG   +  +    +  N
Sbjct: 88  IEEAKRLNLTIAVNELDYLKRLLDLNIDCNFKVHLQIDTGFNRLGFKDKNEVKTAVDMIN 147

Query: 152 KKLGQLSLIISHLACAD--DPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
                L  I  H A A   DP         +   +LI   K     + SS  +L  P   
Sbjct: 148 GSNFVLEGIYQHFATAGIFDPHWDEQVRNFKELTSLIDLKKIPIVHMGSSVSMLTHPKQP 207

Query: 210 FQL-TRPGISLYG-----------GTDKINKSH-------------------PMQTVVTA 238
           F    R GI++YG             DK+ K                      +Q  +  
Sbjct: 208 FTTGVRMGIAIYGYNVAPDSLSNSPKDKLRKMRNNYFIKKYNISETYFDVKIDLQPAMKM 267

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           + RI+ ++K   GE   Y        D ++A+  +GY +G         + H+  V + G
Sbjct: 268 KTRILQLKKVNKGEWFGYNASYTADEDIILAILPVGYNNGIG------HANHNRQVVING 321

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           K +      P++G++ M+MT   +  S+ I+  D + + G  I +     +SG  N + L
Sbjct: 322 KKY------PVVGEMCMNMTAVKVDSSVKID--DEVTLLGDGITVGMFGRSSGMGNAEAL 373

Query: 359 VRIGTRYAKFYT 370
           V IG    +FY 
Sbjct: 374 VNIGKNNPRFYV 385


>gi|320528033|ref|ZP_08029199.1| alanine racemase [Solobacterium moorei F0204]
 gi|320131659|gb|EFW24223.1| alanine racemase [Solobacterium moorei F0204]
          Length = 372

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 158/363 (43%), Gaps = 23/363 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++++L  ++ N   +  +    +  AV+K +AYG G   +A A+  AG +   V+S++E 
Sbjct: 7   MQVNLDKIERNLIQLKEIC-QKKIIAVLKADAYGCGDIHVARAVLEAGAEMIAVSSLDEA 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    + ++ +L G     +  I   + I   +   +    +   +C   H + L+V
Sbjct: 66  LVLRNEGYEGKLLIL-GATEASDIPILIKHGISCTAYSTEWVIKAIKQNCEGLHVH-LKV 123

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG +R+G    + L             +  I +H  CAD  +S++ ++Q  +F+  +  
Sbjct: 124 DTGMSRIGFRTIDELHLAFEKLQAANCDMEGIFTHFCCAD-SNSNLTNLQFSKFKEAVES 182

Query: 189 --YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             Y        +S              R GISLYG +        ++  ++  + +++++
Sbjct: 183 FSYTFPWVHCDNSDATAFFQEDTSNACRIGISLYGIS---TYEKSLEPAISLYSEVVMVK 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG+ V YG       D +IA   IGYADG+                 G K ++ G  
Sbjct: 240 HMHAGDTVGYGATYTAKDDEIIATLPIGYADGFVRANQ------------GRKVYVDGQY 287

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
             I+G++ MD  M  +   + ++    ++IFG  I L+ +A    T  Y+++  + +R  
Sbjct: 288 AEIVGRVCMDQVMIHLEQEVPVKT--VVEIFGEHISLEKMAEELNTIPYEIICLLSSRVT 345

Query: 367 KFY 369
           + Y
Sbjct: 346 RRY 348


>gi|150004319|ref|YP_001299063.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides vulgatus ATCC 8482]
 gi|149932743|gb|ABR39441.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides vulgatus ATCC 8482]
          Length = 821

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 162/377 (42%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N  +  + L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-P 123
           G  LR       I ++   +P     K +FD  L P + S   L    K     GV++ P
Sbjct: 523 GSDLRKAGITCSIMIM---NPELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPS-SHVNSVQLER 181
             +++DTG +RLG + +E  +   +   K+   +   + SHL  +D          Q+E 
Sbjct: 580 IHIKLDTGMHRLGFAPEEIPELI-DRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEM 638

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   F + R GI LYG     N+   +  V 
Sbjct: 639 FEAASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQI--IHNVS 696

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I +    E V Y  +  L RDS IA   IGYADG    L             
Sbjct: 697 TLKTTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRL------------- 743

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G G     + G   P +G I MD+ M D+TD +  + GD   IFG D+ +  ++    T
Sbjct: 744 -GNGHAYCLVNGQKAPYVGNICMDVCMIDVTD-IDCKEGDKTIIFGDDLPVTVLSEILET 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +  R  + Y
Sbjct: 802 IPYEILTSVSNRVKRVY 818


>gi|317009599|gb|ADU80179.1| alanine racemase [Helicobacter pylori India7]
          Length = 377

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 178/382 (46%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N++++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFNAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNSNASMLIDNDLSTMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++ + +S P  
Sbjct: 187 FLEQLLEQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKESCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L        
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI---- 302

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
                  +  I   + P++GK+ MD     + +++  + GD   +FG    K +D   +A
Sbjct: 303 -------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEAILFGDKSAKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIPYETISTLSKRLERVY 376


>gi|126701086|ref|YP_001089983.1| alanine racemase [Clostridium difficile 630]
 gi|254977087|ref|ZP_05273559.1| alanine racemase [Clostridium difficile QCD-66c26]
 gi|255094415|ref|ZP_05323893.1| alanine racemase [Clostridium difficile CIP 107932]
 gi|255102672|ref|ZP_05331649.1| alanine racemase [Clostridium difficile QCD-63q42]
 gi|255316167|ref|ZP_05357750.1| alanine racemase [Clostridium difficile QCD-76w55]
 gi|255518828|ref|ZP_05386504.1| alanine racemase [Clostridium difficile QCD-97b34]
 gi|255652007|ref|ZP_05398909.1| alanine racemase [Clostridium difficile QCD-37x79]
 gi|260684982|ref|YP_003216267.1| alanine racemase [Clostridium difficile CD196]
 gi|260688640|ref|YP_003219774.1| alanine racemase [Clostridium difficile R20291]
 gi|306521749|ref|ZP_07408096.1| alanine racemase [Clostridium difficile QCD-32g58]
 gi|115252523|emb|CAJ70366.1| Alanine racemase 2 [Clostridium difficile]
 gi|260211145|emb|CBA66582.1| alanine racemase [Clostridium difficile CD196]
 gi|260214657|emb|CBE07277.1| alanine racemase [Clostridium difficile R20291]
          Length = 385

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 171/379 (45%), Gaps = 38/379 (10%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  L+ N +++ N L  + +   V+K +AYG G  ++A  L    V    V    EG
Sbjct: 11  EINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVARTAEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           ++LR       I  L G  P +  E  I +   + V S            S G      +
Sbjct: 71  IELRQNGITLPILNL-GYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKACVHV 129

Query: 127 QVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQL 179
           ++D+G  R+G      S+QE ++        KL  + L  + +H A AD+ S      Q 
Sbjct: 130 KIDSGMTRIGFQPNEESVQEIIELN------KLEYIDLEGMFTHFATADEVSKEYTYKQA 183

Query: 180 ERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSH-P 231
             ++ +       G++ ++   ++S+ I+  P+    + R GI LYG   +D + K    
Sbjct: 184 NNYKFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLE 243

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +  +++I  I++   G  +SYG +   T    IA   IGYADG+         + +
Sbjct: 244 LRPAMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTRI------QKN 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALAS 350
           P V       IKG +  ++G+I MD  M  I   + I+VGD + +FG  ++  + +A   
Sbjct: 298 PKVL------IKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGEGEVTAERIAKDL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 352 GTINYEVLCMISRRVDRVY 370


>gi|317177728|dbj|BAJ55517.1| alanine racemase, biosynthetic [Helicobacter pylori F16]
          Length = 377

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 185/383 (48%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKIPILIL-GYSPNSNASMLIDNDLSAMIFSLEQAEIFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD +  +H  + Q++ F 
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRTLKGLEIEGIFTHLSNADSNIKTHAKN-QMKAFN 185

Query: 184 TLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP- 231
             +     + IE       +S+GIL       N    L RPGI LYG   ++ + ++ P 
Sbjct: 186 AFLEQLLNQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPT 245

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +  
Sbjct: 246 ILKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRI 302

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---V 346
             +        I   + P++GK+ MD     + +++  + GD + +FG    K +D   +
Sbjct: 303 QVA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEI 353

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T  Y+ +  +  R  + Y
Sbjct: 354 AALLNTIPYETISTLSKRLERIY 376


>gi|217077374|ref|YP_002335092.1| alr alanine racemase [Thermosipho africanus TCF52B]
 gi|217037229|gb|ACJ75751.1| alr alanine racemase [Thermosipho africanus TCF52B]
          Length = 364

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 153/351 (43%), Gaps = 33/351 (9%)

Query: 30  ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89
           A+   V+K NAYG G   +A +    G+  F V  +EE + LR       I V   +   
Sbjct: 31  AKVMPVIKANAYGHGAVMLAKSAEKMGIDYFAVAFLEEALILRKNGINTNILVFNYLDKD 90

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS 149
              +  D N+   I S  Q+  Y  L+     H   + +DTG NR+G+  ++A+      
Sbjct: 91  FVPLAADNNITITIISNEQVEEYKDLIKKPKVH---INIDTGMNRVGIEPKDAMKIYEKL 147

Query: 150 FNKKLGQLSLIISHLACADDPSS---HVNSVQLERFR--TLISHYKGIEASLASSSGILL 204
            +    ++  I +H A AD            Q E+F    L    +    S AS SGI+ 
Sbjct: 148 ISNGF-EVEGIYTHFAVADSLKKEDIEFTKKQYEKFLEVNLPVKIRHTNNSAASLSGIIS 206

Query: 205 GPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262
             +Y     R GI+ YG   ++++ K   ++ V+T ++ +  ++    GE VSYG     
Sbjct: 207 CGDY----VRIGIASYGLMPSNQV-KDENLKPVLTWKSVVSHVKTLKKGESVSYGRTFVA 261

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
             D  +A   +GYADGY   LS             G+  I G    ILG++ MD  + + 
Sbjct: 262 PYDMKVATIPVGYADGYWRHLSN-----------NGEVLINGKRRKILGRVCMDQFVVEA 310

Query: 323 TDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D   +++GD + + G      I  +++A   GT NY++  RI  R  + Y
Sbjct: 311 DD--EVKIGDEVILIGKQGNEFISAEEIADKVGTINYEVTCRISERVPRIY 359


>gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510]
 gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510]
          Length = 821

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 162/377 (42%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N  +  + L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-P 123
           G  LR       I ++   +P     K +FD  L P + S   L    K     GV++ P
Sbjct: 523 GSDLRKAGITCSIMIM---NPELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPS-SHVNSVQLER 181
             +++DTG +RLG + +E  +   +   K+   +   + SHL  +D          Q+E 
Sbjct: 580 IHIKLDTGMHRLGFAPEEIPELI-DRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEM 638

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   F + R GI LYG     N+   +  V 
Sbjct: 639 FEAASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQI--IHNVS 696

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I +    E V Y  +  L RDS IA   IGYADG    L             
Sbjct: 697 TLKTTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRL------------- 743

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G G     + G   P +G I MD+ M D+TD +  + GD   IFG D+ +  ++    T
Sbjct: 744 -GNGHAYCLVNGQKAPYVGNICMDVCMIDVTD-IDCKEGDKAIIFGDDLPVTVLSEILET 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +  R  + Y
Sbjct: 802 IPYEILTSVSNRVKRVY 818


>gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
 gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
          Length = 821

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 162/377 (42%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N  +  + L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-P 123
           G  LR       I ++   +P     K +FD  L P + S   L    K     GV++ P
Sbjct: 523 GSDLRKAGITCSIMIM---NPELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPS-SHVNSVQLER 181
             +++DTG +RLG + +E  +   +   K+   +   + SHL  +D          Q+E 
Sbjct: 580 IHIKLDTGMHRLGFAPEEIPELI-DRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEM 638

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   F + R GI LYG     N+   +  V 
Sbjct: 639 FEAASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQI--IHNVS 696

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I +    E V Y  +  L RDS IA   IGYADG    L             
Sbjct: 697 TLKTTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRL------------- 743

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G G     + G   P +G I MD+ M D+TD +  + GD   IFG D+ +  ++    T
Sbjct: 744 -GNGHAYCLVNGQKAPYVGNICMDVCMIDVTD-IDCKEGDKAIIFGDDLPVTVLSEILET 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +  R  + Y
Sbjct: 802 IPYEILTSVSNRVKRVY 818


>gi|291165697|gb|EFE27745.1| alanine racemase [Filifactor alocis ATCC 35896]
          Length = 383

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 142/320 (44%), Gaps = 28/320 (8%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           V+KDNAYGLG  ++A      GV  + V ++ E ++LR      RI VL  I+     I 
Sbjct: 44  VLKDNAYGLGATELARVGMQEGVSCYAVANLYEALELRKLDSDIRIIVLGYINEDARTIA 103

Query: 95  FDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNK 152
              ++  V+ +      Y +L  S G      ++VDTG +RLG L  +E+L         
Sbjct: 104 LQYDIDVVVWTKELALSYQQLGFSSGKQARIHIKVDTGLSRLGFLPNEESLAVLEEI--S 161

Query: 153 KLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLISHYK--GIEAS---LASSSGILLG 205
           K+  L+++   SH AC +      +  QL  F T +   K  GI+     +A S+GI+  
Sbjct: 162 KMEHLTIVSTFSHFACTETDDDDFSRGQLSTFLTFVDSMKKRGIQPGFIHMADSAGIVKF 221

Query: 206 PNYHFQLTRPGISLYG---GTD--KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
           P  H    R G    G   GTD  K ++ +P + +++  +++  ++    G  + Y G  
Sbjct: 222 PESHLDFVRCGALAMGSMTGTDVVKSSEQYPTEEIISLYSQVARVQDFPKGTSIGYDGTY 281

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
               D  +    +GY DG    LS     +S  V + GK          +G   MDM MF
Sbjct: 282 FADHDIRVVTVPMGYGDGLSGELS-----NSMQVIINGK------KAKSVGAFCMDMAMF 330

Query: 321 DITDSLSIEVGDYIQIFGPD 340
           D T  +  + GD + I G D
Sbjct: 331 DAT-GIDCKEGDTVTILGQD 349


>gi|327438475|dbj|BAK14840.1| alanine racemase [Solibacillus silvestris StLB046]
          Length = 372

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 168/380 (44%), Gaps = 43/380 (11%)

Query: 11  IDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+ +N  S+ N +    +  AVVK NAYG G  ++A     AG     V + +E V
Sbjct: 14  IDLQAITHNISSLQNYIGPKIQIIAVVKANAYGHGDVEVAKTAIEAGATMLAVATPDEAV 73

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDT--NLIPVISSVPQLTF---YSKLMSCGVSHPY 124
            +R       I VL G  P    I F +  N+I  + S   L     Y+ L++    H  
Sbjct: 74  HIRENFKDIDILVL-GASP-HTFIPFASAENIILTVFSTEWLQLAQQYTPLLNQLRLH-- 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-SLIISHLACADDPSSHVNSVQLERFR 183
            ++VD+G  R+G+S +E L   +   N     L   I +H A AD+  S     Q   F+
Sbjct: 130 -IKVDSGMGRIGVSTKEELMELYTMINSSDDFLVDGIFTHFATADEEDSMYFDNQATLFK 188

Query: 184 TLI---SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHPMQ 233
             +        +     +++ ++  P+ H+   R GIS+YG       GT       P++
Sbjct: 189 DFLGALPQKPRLVHVANTATALVKDPSLHYDAVRFGISMYGLLPSSYVGT---KLPFPIK 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
              + +  ++ I+K  AG+ V YG       D  I    IGYADG    LSG +      
Sbjct: 246 PAFSLQTELVHIKKMQAGQSVGYGATYTAEEDCYIGTIPIGYADGMIRKLSGQE------ 299

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
           V +GGK         I+G+I MD +M  + ++ +  VG+ + + G     +I +DD A  
Sbjct: 300 VLVGGK------RAKIVGRICMDQSMILLPEAYN--VGEEVVLIGCQQQEEITIDDWAHK 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++   I  R  + Y
Sbjct: 352 LQTINYEVPCVITARVPRVY 371


>gi|307637632|gb|ADN80082.1| Alanine racemase [Helicobacter pylori 908]
 gi|325996226|gb|ADZ51631.1| Alanine racemase [Helicobacter pylori 2018]
 gi|325997820|gb|ADZ50028.1| Alanine racemase [Helicobacter pylori 2017]
          Length = 377

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 184/383 (48%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N++++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFNAVKSIVPKDACVMAVVKANAYGAGALKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G +P     ++ D +L  ++ S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYNPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD +  +H  + Q++ F 
Sbjct: 127 LKIDTGMHRLGLEPTFKSIEIVKKIRALKGLEVEGIFTHLSNADANIKTHAKN-QMKAFN 185

Query: 184 TLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP- 231
             +     + IE       +S+GIL       N    L RPGI LYG   ++++ +S   
Sbjct: 186 AFLEQLLNQKIEFKYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESSQT 245

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++ +ARI+ I++   GE + YG       ++L+ V A+GYADG    L       
Sbjct: 246 ILKNVISLKARIVQIKRVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI--- 302

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---V 346
                   +  I   + P++GK+ MD     + + +  + GD + +FG    K +D   +
Sbjct: 303 --------QVAINNQLAPLIGKVCMDQCFVKL-NGIEAKEGDEVILFGDKSAKANDASEI 353

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T  Y+ +  +  R  + Y
Sbjct: 354 AALLNTIPYETISTLSKRLERVY 376


>gi|260171780|ref|ZP_05758192.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. D2]
 gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 846

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 164/377 (43%), Gaps = 36/377 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV--VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++  ++ T  +  VK +AYG G  +IA +L    V    V   +
Sbjct: 487 LEVNLGAMVANLNHYRSMLRHSETKVICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-PY 124
           EG +LR     A I ++        K +FD  L P + +   L    K     G+++ P 
Sbjct: 547 EGSELRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 605

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF- 182
            +++DTG +RLG ++++         N+       + SH   +D P        Q+E F 
Sbjct: 606 HVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQFDAFTREQIELFE 665

Query: 183 ------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
                 +   SH   I   + +++GI   P+  F + R GI LYG    I+ S  +  V 
Sbjct: 666 KGSQELQAAFSH--KILRHICNTAGIERFPDAQFDMVRLGIGLYG-VSPIDNS-IIHNVS 721

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 722 TLKTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHL------------- 768

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G+G     + G   P +G I MD+ M D+TD +    GD   IFG D+ +  ++    T
Sbjct: 769 -GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFGDDLPITVLSDKLDT 826

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I TR  + Y
Sbjct: 827 IPYEVLTSISTRVKRVY 843


>gi|212638046|ref|YP_002314566.1| D-alanine racemase [Anoxybacillus flavithermus WK1]
 gi|226711025|sp|B7GFP5|ALR_ANOFW RecName: Full=Alanine racemase
 gi|212559526|gb|ACJ32581.1| D-alanine racemase [Anoxybacillus flavithermus WK1]
          Length = 385

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 167/389 (42%), Gaps = 58/389 (14%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+  N  SM    G +    AVVK NAYG G  ++A     AG     V  ++E 
Sbjct: 12  EIDLDAIFYNVQSMKQHVGSHVEVIAVVKANAYGHGDIQVAKTALEAGATRLAVAFLDEA 71

Query: 69  VKLR-----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + LR     L  P   I VL    P    +    N   +  +V +  ++ + +   V  P
Sbjct: 72  LALRKKGISLDVP---ILVLGATKPQYAPLAASQN---IALTVFRADWFEQAI---VYAP 122

Query: 124 YA------LQVDTGFNRLGLSLQEALD------FTHNSFNKKLGQLSLIISHLACADDPS 171
           Y       +++DTG  RLG   +E +         H SF      L  + +H A AD+ +
Sbjct: 123 YEQPLNVHMKLDTGMGRLGAKTKEEVQQMIYAIEQHPSFI-----LEGVYTHFATADEQN 177

Query: 172 SHVNSVQLERFRTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG-GTDKIN 227
               S Q + F  ++  +  I+  L   A+S+  L  P+  F   R GIS+YG    +  
Sbjct: 178 IDYFSFQYDTFLHMLE-WLSIQPPLIHCANSAAGLRYPDRIFNAVRFGISMYGLAPSQEM 236

Query: 228 KS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
           KS   +P++   +  +R+  ++K   GE +SYG   +   D  I    IGYADG+     
Sbjct: 237 KSLLPYPLKEAFSLHSRLTHVKKVKGGEKISYGATYEAETDEWIGTVPIGYADGW----- 291

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
            L      SV + GK        PI+G++ MD  M  +   L   VG  + + G      
Sbjct: 292 -LRRMQHFSVLVDGK------RAPIVGRVCMDQMMIRLPYELP--VGTKVTLIGEQQGDR 342

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I +DDVA    T NY++   I  R  + +
Sbjct: 343 ISVDDVAAHVNTINYEIPCTISYRVPRIF 371


>gi|326335280|ref|ZP_08201475.1| Mur ligase domain protein/alanine racemase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692551|gb|EGD34495.1| Mur ligase domain protein/alanine racemase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 368

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 163/371 (43%), Gaps = 22/371 (5%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVE 66
           L+I L  L++N   +   L  + +  AVVK N+YG     IA  L    + D+F V    
Sbjct: 8   LEIRLDNLQHNVLQLKKYLKADTQFLAVVKANSYGNSSIAIAKYLEKKNLADYFAVAFTS 67

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124
           EG++LR       I + +      E II   NL P + S   +  +           +P+
Sbjct: 68  EGIELRKAGVTKPILIFHPQLIDFEDII-HYNLEPTLYSKRLIIHFIDFAKKKNLYEYPF 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183
            ++ ++G NRLG S++E  D       +   ++    SHL  ++D  +      Q+  F+
Sbjct: 127 HIKCNSGMNRLGFSVEEIDDICEIIKKQNNIKVKTAFSHLLASEDLEARSFMEKQISIFK 186

Query: 184 ----TLISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                L +H+   I     ++SGIL  P  HF + R GI +YG  +        + +   
Sbjct: 187 DFQKKLETHFSHKIIYHNCNTSGILNYPEAHFDMVRSGIGMYGFANDTRLQKDFKPITIL 246

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ I  I    AG+ V Y    +  +   IA  ++G+AD       GL+  +   V   G
Sbjct: 247 KSIISQIHHIQAGDYVGYNFGFQAPKAMKIATISVGHAD-------GLNRIYGKGV---G 296

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             FIK    PI+G + MDM M DIT  L  + GD + IF      + +A  + T +Y+L+
Sbjct: 297 FVFIKDKKCPIVGNVCMDMIMTDIT-GLDCDEGDEVIIFDERHTSETLAETAQTISYELV 355

Query: 359 VRIGTRYAKFY 369
             +  R  + +
Sbjct: 356 TSLSRRIKRIF 366


>gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 838

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 165/389 (42%), Gaps = 46/389 (11%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           E L  K+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L    
Sbjct: 469 EVLEKKVHETILEVNLGAMIANLNYYRGKLKPETKMVCMVKASAYGAGSYEIAKTLQEHH 528

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYS 113
           V    V   +EG +LR     A I ++   +P     K +FD  L P + S   L     
Sbjct: 529 VDYLAVAVADEGSELRKAGITANIIIM---NPEMTAFKTMFDYKLEPEVYSFHLLDALIK 585

Query: 114 KLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
           +    G+++ P  +++DTG +RLG + ++          +       + SHL  +D  S 
Sbjct: 586 EAEKEGITNFPIHIKLDTGMHRLGFAPEDMPRLIERLKGQNAVIARSVFSHLVGSD--SQ 643

Query: 173 HVNSV---QLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
             +S    Q+E F       +      I   + +S+GI   P   F + R GI LYG  +
Sbjct: 644 QFDSFTRRQIEMFEKASMELQEAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYG-VN 702

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            I+ S  M  V T +  I+ IR     + V Y  +  LTR S IA   IGYADG    L 
Sbjct: 703 PIDNS-IMNNVSTLKTTILQIRDVPEEDTVGYSRKGHLTRPSRIAALPIGYADGLNRHL- 760

Query: 285 GLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                        G G     + G     +G I MD+ M D+TD +  + GD ++IFG  
Sbjct: 761 -------------GNGHAYCLVNGQRAAYVGNICMDVCMIDVTD-IDCKEGDSVEIFGDH 806

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +  ++    T  Y++L  + TR  + Y
Sbjct: 807 LPITVLSDVLETIPYEVLTSVSTRVKRIY 835


>gi|167758273|ref|ZP_02430400.1| hypothetical protein CLOSCI_00611 [Clostridium scindens ATCC 35704]
 gi|167664170|gb|EDS08300.1| hypothetical protein CLOSCI_00611 [Clostridium scindens ATCC 35704]
          Length = 388

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 176/394 (44%), Gaps = 49/394 (12%)

Query: 4   NEFLRL--KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQD 59
           N + R+  ++DL A++ N   M   +    +  +V+K + YG G  +IA  L     +  
Sbjct: 2   NNYTRICARVDLDAIEYNMEMMKKNIKEGVQMISVIKTDGYGHGALQIARMLEGKEYLWG 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           + V + +E V LR    +  I VL  I P Q K + +  +        ++T Y++ M+  
Sbjct: 62  YAVATPDEAVVLRKGGIKKPILVLGCIFPDQRKAMIENEI--------RMTVYTEEMAKE 113

Query: 120 VSHPYA---------LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADD 169
           VS             +++DTG +RLG  ++ E++D   +        +  + +H A AD+
Sbjct: 114 VSELAGSMGKQAYIHIKLDTGMSRLGFLIEDESVDKIESISRMPNLIMEGMYTHFAKADE 173

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--G 222
                   Q++ +  +         +      ++S+GI+     +  L R GIS YG   
Sbjct: 174 TDKTFTHSQMDGYLWMKKALDERRVTFKFYHCSNSAGIIDVKEANLDLVRAGISTYGLYP 233

Query: 223 TDKINKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
           + ++ K + P++  +   + +  ++    G  VSYGG     R + IA   +GY DGYP 
Sbjct: 234 SSEVKKENVPLKPAMELISHVAHVKWVKEGTPVSYGGTFITKRPTKIATIPVGYGDGYPR 293

Query: 282 TLSGLDSEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339
           +LS              KG+  I G   PILG++ MD  M D T+   ++  D + + G 
Sbjct: 294 SLS-------------NKGYVLIHGKKAPILGRVCMDQFMVDATEIDDVKYADKVTLVGC 340

Query: 340 D----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D    + ++ ++  SG  NY+ +  +G R  + +
Sbjct: 341 DGNEKLPVETLSDLSGRFNYEFVCDLGKRIPREF 374


>gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 830

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 166/389 (42%), Gaps = 43/389 (11%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYN 54
           +E L LK+  T L+ N  +M A   + R+           +VK +AYG G  +IA +L  
Sbjct: 459 SEELELKVHETILEVNLGAMVANLNHYRSMLRHPETKVICMVKASAYGAGSYEIAKSLQE 518

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
             V    V   +EG +LR     A I ++        K +FD  L P + +   L    K
Sbjct: 519 HHVDYLAVAVADEGSELRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIK 577

Query: 115 LMSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS- 171
                G+++ P  +++DTG +RLG ++++         N+       + SH   +D P  
Sbjct: 578 AAEKEGITNFPIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQF 637

Query: 172 SHVNSVQLERF-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
                 Q+E F       +   SH   I   + +++GI   P+  F + R GI LYG   
Sbjct: 638 DAFTRRQIELFEKGSQELQAAFSH--KILRHICNTAGIERFPDAQFDMVRLGIGLYG-VS 694

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            I+ S  +  V T +  I+ IR     + V Y     L R S IA   IGYADG    L 
Sbjct: 695 PIDNS-IIHNVSTLKTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHL- 752

Query: 285 GLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                        G+G     + G   P +G I MD+ M D+TD +    GD   IFG D
Sbjct: 753 -------------GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFGDD 798

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +  ++    T  Y++L  I TR  + Y
Sbjct: 799 LPITVLSDKLDTIPYEVLTSISTRVKRVY 827


>gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
 gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
          Length = 820

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 166/389 (42%), Gaps = 43/389 (11%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYN 54
           +E L LK+  T L+ N  +M A   + R+           +VK +AYG G  +IA +L  
Sbjct: 449 SEELELKVHETILEVNLGAMVANLNHYRSMLRHPETKVICMVKASAYGAGSYEIAKSLQE 508

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
             V    V   +EG +LR     A I ++        K +FD  L P + +   L    K
Sbjct: 509 HHVDYLAVAVADEGSELRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIK 567

Query: 115 LMSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS- 171
                G+++ P  +++DTG +RLG ++++         N+       + SH   +D P  
Sbjct: 568 AAEKEGITNFPIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQF 627

Query: 172 SHVNSVQLERF-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
                 Q+E F       +   SH   I   + +++GI   P+  F + R GI LYG   
Sbjct: 628 DAFTRRQIELFEKGSQELQAAFSH--KILRHICNTAGIERFPDAQFDMVRLGIGLYG-VS 684

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            I+ S  +  V T +  I+ IR     + V Y     L R S IA   IGYADG    L 
Sbjct: 685 PIDNS-IIHNVSTLKTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHL- 742

Query: 285 GLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                        G+G     + G   P +G I MD+ M D+TD +    GD   IFG D
Sbjct: 743 -------------GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFGDD 788

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +  ++    T  Y++L  I TR  + Y
Sbjct: 789 LPITVLSDKLDTIPYEVLTSISTRVKRVY 817


>gi|124009567|ref|ZP_01694241.1| alanine racemase [Microscilla marina ATCC 23134]
 gi|123984806|gb|EAY24781.1| alanine racemase [Microscilla marina ATCC 23134]
          Length = 383

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 177/390 (45%), Gaps = 60/390 (15%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++  +AL+ N + +  L+G+  R ++V+K NAYG G +   P    AGV+ F V S +E
Sbjct: 7   IELSQSALQKNINFIKTLAGDGVRMSSVIKGNAYGHGIDLFVPMAEKAGVRHFSVFSADE 66

Query: 68  GVKLRLYTPQ--ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PY 124
            +++ + + Q  +++ ++  IH  +     + N+   I  + +L    +L +   +    
Sbjct: 67  ALQV-VQSQQHGSKVMIMGHIHNEELLWAIENNVELFIFDLGRLETSLQLAAKNKAQVRI 125

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTH---NSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L ++TG NRLGL   E   A+D      + F+     L  + +H A A+  +++     
Sbjct: 126 HLHLETGMNRLGLEEDELLKAIDLLKKYPDCFH-----LEGVCTHYAGAESIANYA---- 176

Query: 179 LERFRTLISHYKGIEASL------------ASSSGILLGPNYHFQLTRPGISLYGG---- 222
             R ++ I  YK     L            A S+ ++  P     + R GI  YG     
Sbjct: 177 --RVKSQIHEYKRRTRLLSRHEISPKYQHTACSAALVSYPQTRMDMVRVGILQYGFFPTQ 234

Query: 223 -------TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275
                   +K +K+ P+  V+  ++RI+  ++   GE V YG       DS IAV  +GY
Sbjct: 235 ETLIQYLKNKEDKTDPLARVLNWKSRIMSTKEVSTGEFVGYGTTYMAAADSRIAVVPVGY 294

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335
           A GY   LS             G+  I G  + ++G + M++ + D+T++   + GD + 
Sbjct: 295 AQGYSRLLSN-----------QGRVLICGKQLSVIGTVNMNLILVDLTEAPEAQPGDEVV 343

Query: 336 IFGP--DIKLDDVALASGTT--NYDLLVRI 361
           + G   D+ +   +    T   NY+LL R+
Sbjct: 344 LIGSQGDLSISVASFGEFTNQLNYELLTRL 373


>gi|54113967|gb|AAV29617.1| NT02FT0827 [synthetic construct]
          Length = 365

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 173/383 (45%), Gaps = 48/383 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV--TSVE 66
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  + DFF    S+E
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHD--LVDFFAVANSLE 61

Query: 67  EGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSH 122
                R+        +++G+  +   EK+I +   + +     + +L   +K +   V  
Sbjct: 62  ---AFRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKV-- 116

Query: 123 PYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            YA + ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  R
Sbjct: 117 -YAHININTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNR 175

Query: 182 FRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHP 231
           F +++   KG+       L++S G L      + + RPGI  YG       D+ I +  P
Sbjct: 176 FDSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKP 235

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  +++   +II +++   GE V Y    +   D  +AV  IGY DG+P           
Sbjct: 236 IARLLSKVVKIITLQE---GEGVGYSLIYRGFEDEQLAVIPIGYGDGFPRE--------- 283

Query: 292 PSVFLGGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD--- 345
               LG +GF  I   M P+ G+++MD +T+    +   ++VGD +++     +  +   
Sbjct: 284 ----LGDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAF 339

Query: 346 -VALASGTTNYDLLVRIGTRYAK 367
            +A  + T  YD++  +  R  +
Sbjct: 340 SIAKQTNTIEYDIMSTLNDRIVR 362


>gi|169797698|ref|YP_001715491.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii
           AYE]
 gi|213155508|ref|YP_002317553.1| alanine racemase [Acinetobacter baumannii AB0057]
 gi|215485052|ref|YP_002327293.1| alanine racemase [Acinetobacter baumannii AB307-0294]
 gi|301346049|ref|ZP_07226790.1| alanine racemase [Acinetobacter baumannii AB056]
 gi|301511955|ref|ZP_07237192.1| alanine racemase [Acinetobacter baumannii AB058]
 gi|301596084|ref|ZP_07241092.1| alanine racemase [Acinetobacter baumannii AB059]
 gi|332853589|ref|ZP_08434841.1| alanine racemase [Acinetobacter baumannii 6013150]
 gi|332869280|ref|ZP_08438691.1| alanine racemase [Acinetobacter baumannii 6013113]
 gi|169150625|emb|CAM88534.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii
           AYE]
 gi|213054668|gb|ACJ39570.1| alanine racemase [Acinetobacter baumannii AB0057]
 gi|213988697|gb|ACJ58996.1| alanine racemase [Acinetobacter baumannii AB307-0294]
 gi|332728553|gb|EGJ59926.1| alanine racemase [Acinetobacter baumannii 6013150]
 gi|332732837|gb|EGJ64051.1| alanine racemase [Acinetobacter baumannii 6013113]
          Length = 367

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 169/382 (44%), Gaps = 58/382 (15%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  +EE  +
Sbjct: 9   IHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKTA--DGFALLDLEEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +R       I +L G+   Q+  +FD     L   I S  Q+ +  +       HPY  Q
Sbjct: 67  IRALGWTGPILLLEGVFSPQD--LFDCVQYQLSFTIHSEAQIEWVEQ-------HPYPAQ 117

Query: 128 VD------TGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV- 177
            D      +G NRLG   Q   +A +  +N  N  + +++ ++ H + AD        + 
Sbjct: 118 FDVFLKMNSGMNRLGFKPQHYVQAWERLNNLVN--VAKITHMM-HFSDADGDRFGQQGID 174

Query: 178 -QLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP- 231
            Q+  F  ++    G E S+++S+ IL    Y  QL     R GI LYG +     +H  
Sbjct: 175 YQITAFEEIVKDLPG-ERSVSNSAAIL---RYQDQLKSDYVRSGIMLYGSSPDY-PTHSI 229

Query: 232 ----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  ++  + II ++     E V YG      +   I + A GYADGY        
Sbjct: 230 ADWGLQPTMSLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGY-------- 281

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IK 342
              SP+   G    +       +G+++MDM   D+T   S +VG  + ++G       + 
Sbjct: 282 QRISPT---GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLS 338

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           +DDVA++SGT  Y+L+  +  R
Sbjct: 339 IDDVAVSSGTVGYELMCAVTAR 360


>gi|283797687|ref|ZP_06346840.1| alanine racemase [Clostridium sp. M62/1]
 gi|291074583|gb|EFE11947.1| alanine racemase [Clostridium sp. M62/1]
          Length = 422

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 165/378 (43%), Gaps = 29/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL  +++N+ ++ +++G   +    VK NAYG G  +   AL  AG     V +++E
Sbjct: 12  LEIDLDTIRSNFAALRSMAGPGIKIMPAVKANAYGHGIVESCRALEQAGADYLGVGNIDE 71

Query: 68  GVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + LR    Q  I +  G +      +    +LIP I SV      S+L      HP  L
Sbjct: 72  AILLRENGIQTPILIFAGNLVEEVADLYIRYSLIPTIFSVKAAQAISRLSKA--EHPVFL 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS--HVNSVQLERFRT 184
            ++TG  RLG++ +E  DF   +      ++  I SH+A AD P         Q  RF  
Sbjct: 130 GIETGRGRLGVNAEEFPDFVRQTAALPGIKIEGIYSHMAAADWPDKPHEYADWQYRRFLD 189

Query: 185 LISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQT--VV 236
                K +  S     LA++ G +  PN       PG +++G +  +    HP  +  + 
Sbjct: 190 GTRVLKELGLSVPFMQLANTPGSIAYPNLRLSGICPGRAVWGYSPLEKRDGHPALSFPMK 249

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             ++R+++++  + G+        +L     I V A G +DG            SP+   
Sbjct: 250 AWKSRLLMVKDVIGGKFGPGYQAVRLDVPKHIGVMAGGISDGI-----------SPNFAN 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
           GG   ++G  VP+   I ++ T+ D+TD      GD + +FG     +I ++++  A G 
Sbjct: 299 GGSVLLRGKRVPVASSICLEHTILDLTDCPEAAEGDEVVLFGKQGDAEITMEELRAAFGR 358

Query: 353 TNYDLLVRIGTRYAKFYT 370
              +    I    ++ Y 
Sbjct: 359 DLMEFWTGITPHVSRIYV 376


>gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
          Length = 846

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 166/389 (42%), Gaps = 43/389 (11%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYN 54
           +E L LK+  T L+ N  +M A   + R+           +VK +AYG G  +IA +L  
Sbjct: 475 SEELELKVHETILEVNLGAMVANLNHYRSMLRHPETKVICMVKASAYGAGSYEIAKSLQE 534

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
             V    V   +EG +LR     A I ++        K +FD  L P + +   L    K
Sbjct: 535 HHVDYLAVAVADEGSELRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIK 593

Query: 115 LMSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS- 171
                G+++ P  +++DTG +RLG ++++         N+       + SH   +D P  
Sbjct: 594 AAEKEGITNFPIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQF 653

Query: 172 SHVNSVQLERF-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
                 Q+E F       +   SH   I   + +++GI   P+  F + R GI LYG   
Sbjct: 654 DAFTRRQIELFEKGSQELQAAFSH--KILRHICNTAGIERFPDAQFDMVRLGIGLYG-VS 710

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            I+ S  +  V T +  I+ IR     + V Y     L R S IA   IGYADG    L 
Sbjct: 711 PIDNS-IIHNVSTLKTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHL- 768

Query: 285 GLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                        G+G     + G   P +G I MD+ M D+TD +    GD   IFG D
Sbjct: 769 -------------GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFGDD 814

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +  ++    T  Y++L  I TR  + Y
Sbjct: 815 LPITVLSDKLDTIPYEVLTSISTRVKRVY 843


>gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056]
 gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056]
          Length = 828

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 163/391 (41%), Gaps = 50/391 (12%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           E L  K+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L    
Sbjct: 459 EVLEKKVHETILEVNLGAMIANLNYYRGKLRPETKMVCMVKASAYGAGSYEIAKTLQEHH 518

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYS 113
                V   +EG  LR     A I ++   +P     K +FD  L P + S   L     
Sbjct: 519 ADYLAVAVADEGSDLRKAGITASIIIM---NPEMTAFKTMFDYKLEPEVYSFHLLEALIK 575

Query: 114 KLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACAD 168
           +    G+++ P  +++DTG +RLG     A D       +  GQ ++I     SH   +D
Sbjct: 576 EAEKEGITNFPIHVKLDTGMHRLGF----APDDMPLLIERLKGQNAVIPRSVFSHFVGSD 631

Query: 169 DPS-SHVNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
            P        Q+E F       +      I   + +S+GI   P   F + R GI LYG 
Sbjct: 632 APQFDAFTRRQIEIFEKASMQLQEAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYG- 690

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
              I+ S  M  V T +  I+ IR     + V Y  +  L R S IA   IGYADG    
Sbjct: 691 VSPIDNS-IMNNVSTLKTTILQIRDVPEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRH 749

Query: 283 LSGLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           L              G G     + G   P +G I MD+ M D+TD +  + GD ++IFG
Sbjct: 750 L--------------GNGHAYCLVNGQRAPYVGNICMDVCMIDVTD-IDCKEGDSVEIFG 794

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             + +  ++   GT  Y++L  + TR  + Y
Sbjct: 795 DHLPITVLSDVLGTIPYEVLTSVSTRVKRVY 825


>gi|297582852|ref|YP_003698632.1| alanine racemase [Bacillus selenitireducens MLS10]
 gi|297141309|gb|ADH98066.1| alanine racemase [Bacillus selenitireducens MLS10]
          Length = 405

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 166/371 (44%), Gaps = 43/371 (11%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+ +N  ++ A L  +    AVVK NAYG G   +A    +AG     V  ++E 
Sbjct: 29  EIDLNAIHDNVTAIKASLPAHTEMMAVVKANAYGHGAVDVAREALDAGATYLGVAILDEA 88

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHPY 124
           + LR     A I VL  I    E I+  + L  +  +V Q  +  K    L + G     
Sbjct: 89  IALRKAGIGAPILVLGYIRA--EDILIASEL-DIAVTVFQKDWLEKAESLLRAAGRKAVC 145

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFR 183
            +++D+G  R+GL  +E +          L   +    +H+A AD+P +    VQ ERF 
Sbjct: 146 HVKLDSGMGRIGLRKEEEIRELAEVLKASLHIHVEGAYTHMAAADEPGNDYYHVQKERFL 205

Query: 184 TLISHYKGIEASL---------ASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSH 230
            ++     +E+SL         A+S+  L        L R GIS+YG    +    +   
Sbjct: 206 DMMDW---LESSLGEKVKIRHCANSASALRFHEESCNLVRVGISMYGMAPSVEMKPDMKV 262

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P++  ++ ++RI  ++    GE +SYG   + +    I    IGYADG+      + +  
Sbjct: 263 PLKQAMSLKSRITQVKLLEPGEGISYGSTYRTSGHEWIGTVPIGYADGW------IRAHQ 316

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
           S  V       +KG    I+G+I MD  M  + D   +E G  + + G D    + +D+V
Sbjct: 317 SGDV------LVKGKRAKIVGRICMDQMMI-LLDG-PVETGTEVTLIGEDGGSFLSMDEV 368

Query: 347 ALASGTTNYDL 357
           A    T +Y++
Sbjct: 369 AGRIDTISYEI 379


>gi|325263860|ref|ZP_08130593.1| alanine racemase [Clostridium sp. D5]
 gi|324030898|gb|EGB92180.1| alanine racemase [Clostridium sp. D5]
          Length = 387

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 166/386 (43%), Gaps = 47/386 (12%)

Query: 10  KIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVEE 67
           ++DL A+  N   M    G  A+  AV+K + YG G   IA     N  +  +   S+EE
Sbjct: 10  RVDLDAIAYNMEQMKQRIGEGAQIIAVIKMDGYGHGAVPIAEMFEENNYIWGYATASLEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            + LR    +  I VL  I P Q  E I+ D           + T Y K  + G+S   A
Sbjct: 70  AIALRKEGIKKPILVLGCIFPEQYEEMILNDI----------RATVYMKETAEGISKAAA 119

Query: 126 ---------LQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                    ++VDTG  RLG L   +++       +    +L  + +H A AD+      
Sbjct: 120 ALGRKVRIHIKVDTGMGRLGFLPDTDSVKAIREISSLPNIELEGMFTHFAKADETDKSYT 179

Query: 176 SVQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYG--GTDKIN- 227
             Q E+F  +    +   A +      +S+GI+  P+    L R GIS YG   +D+++ 
Sbjct: 180 YKQHEKFVWMKDALEAEGADITYYHCDNSAGIIDFPDMKHNLVRAGISTYGMYPSDEVSQ 239

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           K+  ++  +   + +  +++  AG  +SYGG     +   +A   +GY DGY   LS   
Sbjct: 240 KAVDLKPALELISHVTFVKEVEAGTSISYGGTFTAPKRMKVATIPVGYGDGYSRGLSN-- 297

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                         I+G    ILG++ MD  M D+TD   +   D   + G D    I +
Sbjct: 298 ---------KADVLIRGRRARILGRVCMDQFMVDVTDIPDVRFMDQAVLIGFDGEEHIPV 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           ++++   G  NY+ +  +G R  + Y
Sbjct: 349 EELSGLCGRFNYEFVCCLGKRIPRVY 374


>gi|325291380|ref|YP_004267561.1| Alanine racemase [Syntrophobotulus glycolicus DSM 8271]
 gi|324966781|gb|ADY57560.1| Alanine racemase [Syntrophobotulus glycolicus DSM 8271]
          Length = 407

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 156/361 (43%), Gaps = 40/361 (11%)

Query: 7   LRLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L +++DL A+ +N W     LS   R  AVVK +AYGLG   +A AL   G ++F VT+V
Sbjct: 4   LWIEVDLDAVVHNYWEIQKKLSPGTRCLAVVKADAYGLGAVAVAQALQEEGCREFAVTTV 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSH 122
           EEG  LR    +  I VL    P   +      L   +P  S VP L        C   H
Sbjct: 64  EEGAILRENGIEGMILVLGPTRPADWESAIRKELSLSLPEASWVPLLE-----EICAKHH 118

Query: 123 P---YALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                 L+++TG  R GL    L +   F   +   +  ++    +H A A    +    
Sbjct: 119 AEINVHLKIETGMGRTGLMVGILPQLAGFLQTA---RFVKVEGAFTHFARAAQRDNAYTK 175

Query: 177 VQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
            Q  +F +     +G+  ++      +S+  L  P  H +  R G  L G   +     S
Sbjct: 176 RQYGKFLSACERLEGLGINIPIKHVCNSAAFLDFPEMHHEFVRVGTLLLGHLPSQFFAGS 235

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY-------PLT 282
             ++    A+ARI+ IR+   G  V Y    +  +D+ +AV + GY DG+       P  
Sbjct: 236 IELKDPWKAKARILYIREVPKGTFVGYQSLYRCKKDTRLAVISAGYTDGFGVEPRLVPQG 295

Query: 283 LSGL------DSEHSPSVFLGGKGF-IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335
           L+ L      +      ++LG +   + G  V + GKI M +T+ DI  +   + GD ++
Sbjct: 296 LADLMKIIIKNIAAYGGIYLGREKLTLNGRPVKVAGKIGMQLTVLDI-GAAECQAGDIVE 354

Query: 336 I 336
           +
Sbjct: 355 V 355


>gi|229028090|ref|ZP_04184240.1| Alanine racemase [Bacillus cereus AH1271]
 gi|228733224|gb|EEL84056.1| Alanine racemase [Bacillus cereus AH1271]
          Length = 389

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H  N +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNITHIKNFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|195977514|ref|YP_002122758.1| alanine racemase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|226711061|sp|B4U178|ALR_STREM RecName: Full=Alanine racemase
 gi|195974219|gb|ACG61745.1| alanine racemase Alr [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 366

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 169/373 (45%), Gaps = 31/373 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++DL A++ N   +   +    +T AVVK NAYG G   ++ A+ +  V  + V++++E 
Sbjct: 12  RVDLEAIQANIDKIQRHIPKKVKTYAVVKANAYGHGAVAVSKAVEDQ-VDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
           ++LR       I +L  I   + ++     L   ++S+  L   +K  S   S  +  ++
Sbjct: 71  LELRQAGIDKEILILGVILASELQLAIKHQLTITVASLEWLEL-AKKESVDFSQLHVHVK 129

Query: 128 VDTGFNRLGL-SLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTL 185
           VD+G  R+G+ SL EA      S    +G QL  I +H A AD+    +   QL  F+ L
Sbjct: 130 VDSGMGRIGVRSLAEANQLI--SILSDMGVQLDGIFTHFATADESDHAMFDKQLTFFKQL 187

Query: 186 ISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEA 240
           +       A +  ++S+  L      F   R GI +YG     + ++   P++  ++ E+
Sbjct: 188 VEQLDKRPALVHASNSATSLWHSETIFNAIRLGIVIYGLNPSGNSLSLPCPLKEALSLES 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R++ +++  AG+ V YG          +    IGYADG+   + G             K 
Sbjct: 248 RLVHVKQIQAGDSVGYGASYVAAESEYVGTLPIGYADGWTRNMQGF------------KV 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            ++G    I+G+++MD     +  +  I  G  + + G      I   DVA   GT NY+
Sbjct: 296 LVEGEFCDIIGRVSMDQLTIRLLQAYPI--GTKVTLIGQQGKQVITATDVADYRGTINYE 353

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 354 VLCLLSDRIPREY 366


>gi|299771998|ref|YP_003734024.1| alanine racemase [Acinetobacter sp. DR1]
 gi|298702086|gb|ADI92651.1| alanine racemase [Acinetobacter sp. DR1]
          Length = 367

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 166/381 (43%), Gaps = 56/381 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  ++E  +
Sbjct: 9   IHRQALQNNLAVVRKTMPNSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDLDEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPY--- 124
           +R       I +L GI   Q+  +FD     L   I S  Q+ +  K       HPY   
Sbjct: 67  IRALGWTGPILLLEGIFSPQD--LFDCVQYQLSFTIHSEAQIEWVEK-------HPYPAQ 117

Query: 125 ---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSV-- 177
               L++++G NRLG   Q  +       N  L  +S I  + H + AD        +  
Sbjct: 118 FNVCLKMNSGMNRLGFKPQNYVQAWERLNN--LANVSKITHMMHFSDADGDRFGQQGIDY 175

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP-- 231
           Q+  F  +I    G E S+++S+ IL    Y  QL     R GI LYG +     +H   
Sbjct: 176 QITAFEEIIKDLPG-ERSVSNSAAIL---RYQDQLKSDYARSGIMLYGSSPDY-PTHSIA 230

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +Q  ++  + II ++     E V YG      +   I + A GYADGY         
Sbjct: 231 DWGLQPTMSLRSEIISVQHLEPNESVGYGSNFVAEQPITIGIVACGYADGY--------Q 282

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKL 343
             SP+   G    +       +G+++MDM   D+T   S +VG  + ++G       + +
Sbjct: 283 RISPT---GTPVLVDSVRTRTIGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPI 339

Query: 344 DDVALASGTTNYDLLVRIGTR 364
           DDVA++SGT  Y+L+  +  R
Sbjct: 340 DDVAVSSGTVGYELMCAVTVR 360


>gi|227512311|ref|ZP_03942360.1| alanine racemase [Lactobacillus buchneri ATCC 11577]
 gi|227522397|ref|ZP_03952446.1| alanine racemase [Lactobacillus hilgardii ATCC 8290]
 gi|227084486|gb|EEI19798.1| alanine racemase [Lactobacillus buchneri ATCC 11577]
 gi|227090455|gb|EEI25767.1| alanine racemase [Lactobacillus hilgardii ATCC 8290]
          Length = 374

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 159/387 (41%), Gaps = 48/387 (12%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL I+  A+ NN  +++           VVK N YG G  ++A    NAG + F V  +E
Sbjct: 10  RLIINQKAIYNNVKNAVTHTQSGTDLFVVVKANGYGHGAVQVARIAENAGAKGFCVALLE 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           EG++LR       I VL    P    I  D+++   +SS   L     +++   S     
Sbjct: 70  EGLELRQAGFTEPILVLGITEPTFAPIARDSHISLTVSSEEWLKTAGIILNQQASKEKLH 129

Query: 124 YALQVDTGFNRLGL----SLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             L +DTG  R+G      LQEA   L    ++F+        I +H A AD        
Sbjct: 130 VHLAMDTGMGRIGFQTPDELQEAMLVLKKYQDTFD-----FEGIFTHFATADSKDDTYFQ 184

Query: 177 VQLERFRTLIS------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKI 226
            Q E ++ +++       Y  +  +  S    + G N    + R GIS YG    G +  
Sbjct: 185 YQYENYQKMLAVVDKKPKYVHVANTATSLWHKVCGAN----MVRYGISTYGLNPSGKEIT 240

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              + +   ++ +A +  ++K   G+ + YG   +   D  I    IGYADG+P  + G 
Sbjct: 241 RTPYTLFPAMSFQAGLSYVKKVPKGKSIGYGATYQTKEDEWIGTVPIGYADGFPRKMQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIK 342
                          + G   PI+G++ MD  M  +      +    + I G     +I 
Sbjct: 301 SV------------LVDGQYCPIVGRVCMDQFMIKLPKQYGTDT--VVTIIGKSGAHEIT 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +DD+A   GT NY+++     R  + Y
Sbjct: 347 VDDIADQLGTINYEVVCGFSERLQRKY 373


>gi|291087150|ref|ZP_06345528.2| alanine racemase [Clostridium sp. M62/1]
 gi|291075783|gb|EFE13147.1| alanine racemase [Clostridium sp. M62/1]
          Length = 414

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 161/384 (41%), Gaps = 37/384 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  ++ N   + A L        VVK + YG G  + A A+    V  + V + +E +
Sbjct: 20  IHLDRIEQNMKEIAAGLPEGTAVIGVVKADGYGHGAAETAAAI-EPYVSGYAVATADEAL 78

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQV 128
           +LR       + VL  +   + + +   ++ PVI        +SKL    G+     L V
Sbjct: 79  ELRKSGVSLPVLVLGSVRDSRFRELLAADVRPVIFEEETAEAFSKLAGEAGIRGSVHLAV 138

Query: 129 DTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D G +R+GL   +E+L+      +     +  + +H   AD+    V   Q E FR   +
Sbjct: 139 DAGMSRIGLKPSEESLEMIDRISSLPGLFIEGLFTHFPRADEEDKAVTKRQFEDFRNFAA 198

Query: 188 H-----------YKGIEASLASSSGIL----LGPNYHFQLTRPGISLYG--GTDKINKSH 230
                        K +     +S+GI+    +         R GI +YG   + +++++ 
Sbjct: 199 QVSELLTKKEQGRKKLICHCMNSAGIIDSHRMPEGMEMDAVRAGICIYGLYPSGEVDRNR 258

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +   +  ++ I  I++   G  VSYGG     R   +A    GY DGYP  LSG    
Sbjct: 259 IRLLPAMELKSYITYIKEIEPGTAVSYGGTFVARRPMRVATVCAGYGDGYPRGLSGR--- 315

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G+  I+G    ILG+I MD  M D+T+    E  D + + G D    I +++
Sbjct: 316 --------GEVLIRGKRAKILGRICMDQFMADVTEIPEAEKWDTVTLVGRDGKEEITMEE 367

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   G  +Y++   IG R  + Y
Sbjct: 368 LAAQCGGFHYEIPCLIGKRVPRIY 391


>gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 825

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 162/375 (43%), Gaps = 32/375 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   A+   N +   ++K + YG G  +IA  L +       V   +E
Sbjct: 466 LEVNLNAMVDNLNYYRAMMHPNTKLVCMIKADGYGAGAVEIAKTLQDHRADYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-HP 123
           G  LR     + I ++   +P     K +FD +L P + S   L    K     G++  P
Sbjct: 526 GATLRRNGITSSIMIM---NPEMTAFKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGFP 582

Query: 124 YALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181
             +++DTG +RLG   ++ +        N+       + SH   +D D     +  Q ER
Sbjct: 583 VHIKLDTGMHRLGFDPEKDVPRLIERLHNQNALIPKSVFSHFVGSDADQFDDFSQQQFER 642

Query: 182 F-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           F       +    H+  I   + +S+GI   P     + R G+ LYG   + N    +  
Sbjct: 643 FDVGSKMLQAAFEHH--ILRHIDNSAGIEHFPQRQLDMCRLGLGLYGINPRNNAI--INN 698

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V T    I+ +RK  AG+ V Y  +  +  DS+IA   IGYADG    L   +       
Sbjct: 699 VSTLRTTILQLRKVKAGDTVGYSRRGTIDHDSVIAAIPIGYADGLNRRLGNRN------- 751

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              G   +       +G I MD+ M D+T  +    GD ++IFG ++ +  ++ A  T  
Sbjct: 752 ---GYCLVNNQQAEYVGNICMDVAMIDVT-GIDCHEGDSVEIFGDNLPVTVLSDALQTIP 807

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  I  R  + Y
Sbjct: 808 YEVLTGISNRVNRVY 822


>gi|291550435|emb|CBL26697.1| alanine racemase [Ruminococcus torques L2-14]
          Length = 388

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 169/384 (44%), Gaps = 43/384 (11%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
           +I+L A+  N   M N +    R  AV+K +AYG G   +A        +  + V  + E
Sbjct: 10  RINLDAIAYNMEQMKNRIGQEGRLIAVIKTDAYGHGAVPLAEMFEETPYIWGYAVACMGE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
              LR +  +  I +L  + P + + + +  +        +   Y++ M+ G++      
Sbjct: 70  ARTLRAHGIKKPILILGCVFPDEYEEMVEKEI--------RAAVYTEEMAKGMAEAAVRS 121

Query: 126 -------LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSV 177
                  +++DTG  R+G  + +    T +  +K    ++  + +H A AD+        
Sbjct: 122 GKTAFLHIKIDTGMGRIGFKVSKESVETISRISKLPNIKMEGMFTHFAKADEFDKSYTFA 181

Query: 178 QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           Q E+F  +    +  G++ S     +S+GI+  P+    L R GIS+YG   +D++ K  
Sbjct: 182 QHEKFLWMKEQLEKNGVQISYYDCDNSAGIIDFPDMKHDLARAGISIYGMYPSDEVKKDA 241

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  +   + I  ++    G  +SYGG     +   IA   +GY DGYP +LS     
Sbjct: 242 VDLKPALELISHISFVKDVEKGTSISYGGTFVAPKKMRIATIPVGYGDGYPRSLSN---- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   I G    I+G++ MD  M D+T+    +  D + + G D    I+++D
Sbjct: 298 -------KGYVLIHGKRADIVGRVCMDQFMVDVTEIPEAKFMDPVTLVGKDKDAVIRVED 350

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           ++  SG  NY+ +  +  R  + Y
Sbjct: 351 LSDLSGRFNYEFVCDLSKRVPREY 374


>gi|313900478|ref|ZP_07833971.1| alanine racemase [Clostridium sp. HGF2]
 gi|312954540|gb|EFR36215.1| alanine racemase [Clostridium sp. HGF2]
          Length = 416

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 173/401 (43%), Gaps = 72/401 (17%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           +++L  LK N   + AL S + +  AV+K + YG G  +IA A+ +  + D+F V S  E
Sbjct: 40  EVNLQQLKENTRKVRALLSKDTKLLAVLKADGYGHGAVRIAKAIED--MSDWFAVASFYE 97

Query: 68  GVKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123
             +LR   + TP     +++G        + D+N    I    Q     K ++C  +S+ 
Sbjct: 98  ARELRDQGITTP----ILVFGF-------LDDSN----IEEAAQ-----KNITCSALSYS 137

Query: 124 YALQV-----------------DTGFNRLGLSLQE-----ALDFTHNSFNKKLGQLSLII 161
           YAL +                 DTGF+RLG++ +E     A       +     Q++ I 
Sbjct: 138 YALHIAELCEQKKLRLSMHIKLDTGFHRLGIACEEERITEAYKEVRTLYELPQLQITGIY 197

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLT 213
           +H + A   +    +    +++        +E            +S   L  P  H  + 
Sbjct: 198 THFSTAGSKALQDEAFLARQYQLFCDMLHRLEEDHIDPGIRHCCNSKATLTNPEMHLDMV 257

Query: 214 RPGISLYG-GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAA 272
           R G+ LYG G+D   +   ++ +V  +ARI  IR    GE + YG      +   IAV +
Sbjct: 258 RVGLYLYGLGSDADIEYLKLEPIVNWKARIYAIRDVKQGEGIGYGRTFITPQPMRIAVVS 317

Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +G+ADGY   L   D      V++     + G    ILGKI MD+ M DITD   + V D
Sbjct: 318 LGFADGYSRCLYASD-----QVYV----LVHGKRTRILGKICMDVMMVDITDIPDVRVND 368

Query: 333 YIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I + G +    I  + +   +G T  ++   +G R  + Y
Sbjct: 369 TITVLGSEGTQRISANLLGRETGGTAVEVTCGMGKRVQRVY 409


>gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010]
 gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010]
          Length = 826

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 169/376 (44%), Gaps = 34/376 (9%)

Query: 9   LKIDLTAL--KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+    NW+  + +    +   ++K +AYG G  +IA  L +  V    V   +
Sbjct: 467 LEVNLNAVVANLNWYR-SLMKPETKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVAD 525

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-H 122
           EGV LR     + I ++   +P     K +FD +L P + S   L    K     G++  
Sbjct: 526 EGVTLRKNGITSNIMIM---NPEMSSFKTLFDFDLEPEVYSFRILDALVKAAEKEGITGF 582

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLER 181
           P  +++DTG +RLG      +D   N    +   +   + SH   +D  S   +    ++
Sbjct: 583 PVHIKLDTGMHRLGFDPISDIDELINRLKHQNAIIPRSVFSHFVGSD--SDGFDDFSAQQ 640

Query: 182 FRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F    +  K ++A+ +        +S+GI   P+    + R G+ LYG   + N+   + 
Sbjct: 641 FALFDAGSKKLQAAFSHKILRHIDNSAGIEHFPSRQLDMCRLGLGLYGINPRTNER--IN 698

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           T+ T +  I+ +R   +G+ V Y  +  +  DS+IA   IGYADG       L + H   
Sbjct: 699 TISTLKTTILQLRNVPSGDTVGYSRKGTIQHDSVIAAIPIGYADGLN---RHLGNRH--- 752

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
               G   + G     +G I MD+ M D+T  +  + GD ++IFG  + +  ++    T 
Sbjct: 753 ----GYCLVGGQKAAYVGNICMDVAMIDVT-GIDCKEGDSVEIFGEHLPVTVLSDILDTI 807

Query: 354 NYDLLVRIGTRYAKFY 369
            Y++L  I  R  + Y
Sbjct: 808 PYEILTNISNRVKRIY 823


>gi|239503097|ref|ZP_04662407.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii
           AB900]
          Length = 367

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 170/382 (44%), Gaps = 58/382 (15%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  ++E  +
Sbjct: 9   IHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDLDEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +R       I +L GI   Q+  +FD     L   I S  Q+ +  K       HPY+ Q
Sbjct: 67  IRALGWTGPILLLEGIFSPQD--LFDCVQYQLSFTIHSEAQIEWVEK-------HPYSAQ 117

Query: 128 VD------TGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV- 177
            D      +G NRLG   Q   +A +  +N  N  + +++ ++ H + AD        + 
Sbjct: 118 FDVFLKMNSGMNRLGFKPQHYVQAWERLNNLAN--VAKITHMM-HFSDADGDRFGQQGID 174

Query: 178 -QLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP- 231
            Q+  F  ++    G E S+++S+ IL    Y  QL     R GI LYG +     +H  
Sbjct: 175 YQITAFEEIVKDLPG-ERSVSNSAAIL---RYQDQLKSDYVRSGIMLYGSSPDY-PTHSI 229

Query: 232 ----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  ++  + II ++     E V YG      +   I + A GYADGY        
Sbjct: 230 ADWGLQPTMSLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGY-------- 281

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IK 342
              SP+   G    +       +G+++MDM   D+T   S +VG  + ++G       + 
Sbjct: 282 QRISPT---GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLP 338

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           +DDVA++SGT  Y+L+  +  R
Sbjct: 339 IDDVAVSSGTVGYELMCAVTAR 360


>gi|219685888|ref|ZP_03540693.1| alanine racemase [Borrelia garinii Far04]
 gi|219672556|gb|EED29590.1| alanine racemase [Borrelia garinii Far04]
          Length = 366

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 152/352 (43%), Gaps = 28/352 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G       +K +AYG G   I        +  F ++++E+   L+      +I +   + 
Sbjct: 26  GEKEIVVTLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 85

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGLSLQEALD 144
             + K +    L+P ++    L    K   C +        L++D G NR G+ +  AL+
Sbjct: 86  KKEIKNLIKLELLPFVADFEYLFLIEK--ECALQKKKIKVHLKIDIGMNRYGIRIDSALE 143

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N +  +L  I SHL   ++  +     Q+E+F  ++     K I       S+S
Sbjct: 144 IATYIQNSQFLELEGICSHLPATENFKT--TQKQIEKFLLVLETLKQKNINPKFVHISNS 201

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKI-NKSHPM--QTVVTAEARIILIRKALAGELVS 255
           G ++    N  F + RPG+ LYG    + NK   +  + V+   +++I I+    GE +S
Sbjct: 202 GHIINYKINPQFNMVRPGLILYGYCQSLKNKKTTLNFKPVLNLFSKVIFIKNVKKGEKIS 261

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y G  +   D  I +  IGY DG P  +      ++   FL     I      I GK+ M
Sbjct: 262 YSGIFQAKEDMKIGIIPIGYFDGIPQNI------NNNFYFL-----INNQKCKIRGKVCM 310

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++ + +I   L +  G  ++I    + +D ++  S  ++Y+LL  IG +Y K
Sbjct: 311 NLAIVEIPKDLKVRTGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIG-KYEK 361


>gi|262281362|ref|ZP_06059143.1| alanine racemase 2 PLP-binding [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257188|gb|EEY75925.1| alanine racemase 2 PLP-binding [Acinetobacter calcoaceticus
           RUH2202]
          Length = 367

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 167/381 (43%), Gaps = 56/381 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  ++E  +
Sbjct: 9   IHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDLDEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPY--- 124
           +R       I +L GI   Q+  +FD     L   I S  Q+ +  K       HPY   
Sbjct: 67  IRALGWTGPILLLEGIFSPQD--LFDCVQYQLSFTIHSEAQIEWVQK-------HPYPAK 117

Query: 125 ---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSV-- 177
               L++++G NRLG   Q  +       N  L  +S I  + H + AD        +  
Sbjct: 118 FDICLKMNSGMNRLGFKPQHYVQAWERLNN--LANVSKITHMMHFSDADGDRFGQQGIDY 175

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP-- 231
           Q+  F  +I    G E S+++S+ IL    Y  QL     R GI LYG +     +H   
Sbjct: 176 QITAFEDIIKDLPG-ERSVSNSAAIL---RYQDQLKSDYARSGIMLYGSSPDY-PTHSIA 230

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +Q  ++  + II ++   A E V YG      +   I + A GYADGY         
Sbjct: 231 DWGLQPTMSLRSEIISVQHLDANESVGYGSNFVAEQPMTIGIVACGYADGY--------Q 282

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKL 343
             SP+   G    +       +G+++MDM   D+T   + +VG  + ++G       + +
Sbjct: 283 RISPT---GTPVLVDSVRTRTVGRVSMDMLAVDLTGIENAKVGSEVVLWGQSSTGVVLPI 339

Query: 344 DDVALASGTTNYDLLVRIGTR 364
           DDVA++SGT  Y+L+  +  R
Sbjct: 340 DDVAVSSGTVGYELMCAVTAR 360


>gi|260551290|ref|ZP_05825491.1| alanine racemase 2 PLP-binding [Acinetobacter sp. RUH2624]
 gi|260405604|gb|EEW99095.1| alanine racemase 2 PLP-binding [Acinetobacter sp. RUH2624]
          Length = 367

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 164/377 (43%), Gaps = 56/377 (14%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  ++E  ++R  
Sbjct: 13  ALQNNLVVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDLDEAKRIRAL 70

Query: 75  TPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD-- 129
                I +L G+   Q+  +FD     L   + S  Q+ +  K       HPY  Q D  
Sbjct: 71  GWTGPILLLEGVFSPQD--LFDCVQYQLSFTVHSEAQIEWVEK-------HPYPAQFDVF 121

Query: 130 ----TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSV--QLER 181
               +G NRLG   Q  +       N  L  +S I  ++H + AD        +  Q+  
Sbjct: 122 LKMNSGMNRLGFKPQHYVQAWERLNN--LANVSKITHMTHFSDADGDRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP-----M 232
           F  ++    G E S+++S+ IL    Y  QL     R GI LYG +     +H      +
Sbjct: 180 FEEIVKDLPG-ERSVSNSAAIL---RYQDQLKSDYARSGIMLYGSSPDY-PTHSIADWGL 234

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  ++  + II ++     E V YG      +   I + A GYADGY           SP
Sbjct: 235 QPTMSLRSEIISVQHLEPNESVGYGSNFVTEQPMTIGIVACGYADGY--------QRISP 286

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVA 347
           +   G    +       +G+I+MDM   D+T   S +VG  + ++G       + +DDVA
Sbjct: 287 T---GTPVLVDSVRTRTIGRISMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVA 343

Query: 348 LASGTTNYDLLVRIGTR 364
           ++SGT  Y+L+  +  R
Sbjct: 344 VSSGTVGYELMCAVTAR 360


>gi|323357274|ref|YP_004223670.1| alanine racemase [Microbacterium testaceum StLB037]
 gi|323273645|dbj|BAJ73790.1| alanine racemase [Microbacterium testaceum StLB037]
          Length = 373

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 170/376 (45%), Gaps = 39/376 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ A+  N      L+G     AVVK + YG G  + A A    G     V+ ++E + 
Sbjct: 13  IDVDAITENVRHFRRLTG-VEVIAVVKADGYGHGAHRAAQAALRGGATRIGVSDIDEALA 71

Query: 71  LRLYTPQARIFVLYGIH-PGQ---EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           LR     A +F    +H PG    E +  D  L   IS + QL    +           L
Sbjct: 72  LRRAGIHAPLFAW--LHAPGASFVEAVRHDIEL--GISDIDQLLRAGESAQGDRPAAVHL 127

Query: 127 QVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFR 183
           +++TG +R G++  +  + F   +  +++G+L ++   SHL+ A   S   +   L RF 
Sbjct: 128 KIETGLSRNGIAPADWRVVFAEAARLERIGRLRVVGLFSHLSNA---SEEDDRAALARFE 184

Query: 184 --TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235
              +++   G+   L   +        P       R GI +YG +   D+ +    ++  
Sbjct: 185 EGVVLAASVGLNPPLRHIAATHAAIALPEARLTGVRIGIGIYGISPFHDRTSADLGLRPA 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T    +  +R+  AG  VSYG   +  RD+ +A+  +GYADG P       S+  P V 
Sbjct: 245 MTLRGAVSAVRRVPAGTGVSYGYVYRTERDTTLALVPLGYADGVPRQA----SDRGP-VV 299

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLD---DVALASG 351
           +GG+ F      P+ G++ MD  + D+ D   + VGD + +FG P + +    D   A+ 
Sbjct: 300 IGGRRF------PVAGRVAMDQFVVDVGDH-PVSVGDEVVLFGDPTLGVPAARDWGDAAD 352

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y+++ R+G R  +
Sbjct: 353 TIDYEIVTRVGPRVPR 368


>gi|323516181|gb|ADX90562.1| alanine racemase [Acinetobacter baumannii TCDC-AB0715]
          Length = 367

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 169/382 (44%), Gaps = 58/382 (15%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  +EE  +
Sbjct: 9   IHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDIEEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +R       I +L G+   Q+  +FD     L   I S  Q+ +  +       HPY  Q
Sbjct: 67  IRALGWTGPILLLEGVFSPQD--LFDCVQYQLSFTIHSEAQIEWVEQ-------HPYPAQ 117

Query: 128 VD------TGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV- 177
            D      +G NRLG   Q   +A +  +N  N  + +++ ++ H + AD        + 
Sbjct: 118 FDVFLKMNSGMNRLGFKPQHYVQAWERLNNLAN--VAKITHMM-HFSDADGDRFGQQGID 174

Query: 178 -QLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP- 231
            Q+  F  ++    G E S+++S+ IL    Y  QL     R GI LYG +     +H  
Sbjct: 175 YQITAFEEIVKDLPG-ERSVSNSAAIL---RYQDQLKSDYVRSGIMLYGSSPDY-PTHSI 229

Query: 232 ----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  ++  + II ++     E V YG      +   I + A GYADGY        
Sbjct: 230 ADWGLQPTMSLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGY-------- 281

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IK 342
              SP+   G    +       +G+++MDM   D+T   S +VG  + ++G       + 
Sbjct: 282 QRISPT---GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVILP 338

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           +DDVA++SGT  Y+L+  +  R
Sbjct: 339 IDDVAVSSGTVGYELMCAVTAR 360


>gi|187478906|ref|YP_786930.1| alanine racemase, catabolic [Bordetella avium 197N]
 gi|123514360|sp|Q2KXU7|ALR_BORA1 RecName: Full=Alanine racemase
 gi|115423492|emb|CAJ50026.1| alanine racemase, catabolic [Bordetella avium 197N]
          Length = 374

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 150/348 (43%), Gaps = 38/348 (10%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AV+K NAYG G E+   A   A  Q   +  +EE V+ R       I +L G    Q+  
Sbjct: 41  AVIKANAYGHGIERALRAFSEA--QGLAMLDIEEAVRCREAGWAGPILLLEGFFTPQDID 98

Query: 94  IFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY--ALQVDTGFNRLGLSLQE-ALDFTHNS 149
           + D  ++   +    QL   ++      SH     +++++G NRLG S Q     F    
Sbjct: 99  LLDRYHISTAVHCQEQLDMLARARP---SHRINAMVKLNSGMNRLGFSPQAYGAAFEAAQ 155

Query: 150 FNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPN 207
              + G L  +  ++H A AD P       Q E F+       G   S+ +S+  L  P 
Sbjct: 156 ALMRDGVLGSVGKMTHFATADGPQG--PQWQWEVFQAATQGLPG-PVSVCNSAATLRYPE 212

Query: 208 YHF-----QLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
                      RPGI LYG +   D    +  ++  +T  A II +++   G+ V YG  
Sbjct: 213 LAAGPGATHWVRPGICLYGASPFSDTPAAAFGLRPAMTLRAEIIGVQQVSPGQTVGYGAT 272

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
              ++   + V + GYADGYP         H  +   G    + G    +LG+++MDM M
Sbjct: 273 FAASKAMRVGVVSCGYADGYP--------RHCAT---GTPVTVNGVATRLLGRVSMDMMM 321

Query: 320 FDITDSLSIEVGDYIQIF---GPDIKLDDVALASGTTNYDLLVRIGTR 364
            D+    +  VG  + ++   GPD+  D VA A GT  Y+LL  +  R
Sbjct: 322 VDLDPVPAAGVGAPVVLWGEGGPDV--DAVAAAGGTIGYELLTALAAR 367


>gi|55980031|ref|YP_143328.1| alanine racemase [Thermus thermophilus HB8]
 gi|55771444|dbj|BAD69885.1| alanine racemase [Thermus thermophilus HB8]
          Length = 360

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 172/369 (46%), Gaps = 34/369 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL AL  N+  +   +G      V+K +AYG G   +A  L   GV  F V ++EEG
Sbjct: 16  VEVDLAALWANYRLLAGRAGG-EVIPVLKADAYGHGALPLARFLEGKGVGRFAVATLEEG 74

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127
            +LR    +  + +L  +HP + +      L+P +S++      S +  + G+     L+
Sbjct: 75  RRLREGGIKGEVLLLGSLHPLEAEEALRLGLVPTLSNLEAAEALSQRARALGLVPRAHLK 134

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VDTG NR+G   +EA+        + LG ++  + +HLA A + ++ V + Q  RF+ + 
Sbjct: 135 VDTGMNRVGFPSEEAVSALRAV--EALGVRVEGVYTHLATAGEDAAFVET-QRRRFQEVR 191

Query: 187 SHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
               +G    L +S G+L   +      R G++LYG    +     ++ ++   AR  L+
Sbjct: 192 RALGEGYFYHLENSLGLLR--HGATAGVRVGLALYG----LVPGFGLRPILRILARPTLV 245

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK-- 303
           ++  AG+ V YGG         +A   +GYADG P                G   F+K  
Sbjct: 246 KRLKAGDRVGYGGVYVARGGEWLATLPVGYADGLP---------------WGAVRFVKGP 290

Query: 304 -GYMVPILGKITMDMTMFDITDSLSIE-VGDYIQI-FGPDIKLDDVALASGTTNYDLLVR 360
            G ++ + G+I+MD T   +   + +E V + +   FGP   L   A A GT  Y++ V 
Sbjct: 291 DGRLLEVAGRISMDQTTVLLPGPVGLEAVFEVLSADFGP-TGLLAWAEARGTLPYEVAVH 349

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 350 LSRRLPRRY 358


>gi|332673780|gb|AEE70597.1| alanine racemase [Helicobacter pylori 83]
          Length = 377

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 179/382 (46%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   +  + +S P  
Sbjct: 187 FLEQLLEQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSSGMKESCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +   
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRIQ 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
            +        I   + P++GK+ MD     + +++  + GD + +FG    K +D   +A
Sbjct: 304 VA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASGIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIPYETISTLSKRLERVY 376


>gi|291542251|emb|CBL15361.1| alanine racemase [Ruminococcus bromii L2-63]
          Length = 392

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 176/389 (45%), Gaps = 48/389 (12%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I L A+++N++ + N ++ + +   V+K + YG G  +++      G   F V++++EG
Sbjct: 10  EISLNAIEHNYNVIRNKVADDTKVCCVIKADGYGHGAVELSQIYEKLGADFFAVSNIDEG 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP--VISSVPQLTFYSKLMSCGVSH---- 122
           +++R    +  I +L G  P  E      NL    +  +V  L +  +L    V      
Sbjct: 70  IEIRKSGSKLPIVIL-GYTPVSEA----ENLAEYDISQAVFSLEYAKELSEKCVEEDCIC 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKK-------LGQLSL--IISHLACADDPSS- 172
              ++VD+G +R+G   QE   F  + ++ +       L  L +  + +H   +D+ +  
Sbjct: 125 KMHIKVDSGMSRIGFMCQE---FPRDEYSIEEICEACCLPNLEVEGLFTHFCVSDEDAEG 181

Query: 173 -HVNSVQLERFRTLISHYK--GIEASL--ASSSGILLG-PNYHFQLTRPGISLYG--GTD 224
               + Q E F  +    K  G++ S+   S+SG +   P     + R GI LYG   + 
Sbjct: 182 REFTNKQYENFIHVRDSLKKRGVDISVVHCSNSGAIEDYPETCCDMVRAGIILYGLAPSS 241

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
           K+     +   +T +  +  +++   G  +SYG      R   IA   IGYADG+ +  +
Sbjct: 242 KLADRLDLVPAMTLKTVVAFVKEVQKGATISYGRTFTADRKMKIATVPIGYADGF-IRQN 300

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----D 340
             D          G   + G    I+G+I MD TM D+TD   ++ GD + +FG     +
Sbjct: 301 AKD----------GYMMVNGKKAKIVGRICMDQTMLDVTDIEDVKTGDEVVVFGTGENGE 350

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              D +A  +GT NY+ +  +G R  + Y
Sbjct: 351 PTADSLAENTGTINYETVCLVGKRVPRIY 379


>gi|119952958|ref|YP_945167.1| alanine racemase [Borrelia turicatae 91E135]
 gi|119861729|gb|AAX17497.1| alanine racemase [Borrelia turicatae 91E135]
          Length = 366

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 164/380 (43%), Gaps = 48/380 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+ +LTA+KN+              A +K +AYG G  +    L   G+  F +  ++E 
Sbjct: 14  LEYNLTAIKNHIQK-------RELVATLKADAYGHGLIQTFKFLKEKGINYFGIFWIDEA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP---YA 125
           +K++    +A + +         K +   ++ P ++    L+   +   C   +      
Sbjct: 67  LKIKKIDKRANVLLYINTDKSAIKNLVKFDITPFVADSQYLSLIEQ--ECRKQNKKIKVH 124

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L+VD G NR G+ ++ AL+      N KL +   + +HL   ++    +   Q+E+F   
Sbjct: 125 LKVDVGMNRYGIKIENALNLAMQIQNSKLVEFEGVCTHLPTTEN--RKITQAQIEKFVHF 182

Query: 186 ISHYK--GIEASLASSSGILLGPNY----HFQLTRPGISLYGGTDKINKSHP-------- 231
           I+  K   I+     +S      NY     F + RPG+ LYG        HP        
Sbjct: 183 INELKTKNIKPKFIHASNSEHITNYPISEKFNMVRPGLILYG-------YHPNSNSLNNN 235

Query: 232 --MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++  ++II ++K    E +SY G      D  I +  +GY DG P   S     
Sbjct: 236 LQLKPVLSLYSKIIFLKKIKKDEQISYSGLFTAKEDMQIGLLPVGYFDGIPQNTSN---- 291

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
           +   +    K FI+G       KI M++++ +I   L I +G+ ++I    + LD ++  
Sbjct: 292 NFYCIIRDKKCFIRG-------KICMNISIIEIPKDLKINIGEKVEITSERLSLDILSKE 344

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           SG + Y++L  IG    K Y
Sbjct: 345 SGMSKYEILCSIGKHEKKKY 364


>gi|322388802|ref|ZP_08062399.1| alanine racemase [Streptococcus infantis ATCC 700779]
 gi|321140421|gb|EFX35929.1| alanine racemase [Streptococcus infantis ATCC 700779]
          Length = 367

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 163/385 (42%), Gaps = 57/385 (14%)

Query: 11  IDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A++ N   M   +  +A   AVVK NAYG G   +A A+    V  F V++++E +
Sbjct: 13  IDLGAIRYNIQQMGEHTPKDALKWAVVKANAYGHGAVAVATAI-QGDVDGFCVSNIDEAL 71

Query: 70  KLRLYTPQARIFVL-------------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           +LR      +I +L             Y I      + +  NL+   S +  LT +    
Sbjct: 72  ELRQAGITKKILILGVSEVESLSLAKEYAITLTVAGLEWIENLLATESDLSGLTVH---- 127

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                    L++D+G  R+G               +    +  I +H A AD+ S    +
Sbjct: 128 ---------LKIDSGMGRIGFRSTSEAAQAQALLKEHGANVEGIFTHFATADEESDSYFN 178

Query: 177 VQLERFRTLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINK 228
            QLE F+ +I+  + + E   AS+S   L   +H    F   R G S+YG       +  
Sbjct: 179 QQLECFKEIIAGLQEVPELVHASNSATTL---WHAETIFNAVRMGDSMYGLNPSGQVLEL 235

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
            + ++  +T E+ I+ ++K  AG  + YG   +   + +IA   IGYADG+   +     
Sbjct: 236 PYKLKPALTLESAIVHVKKVPAGACMGYGATYQADSEQVIATLPIGYADGWTRDMQNFSV 295

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G + PI+G+++MD     +     +  G  + + G D    I   
Sbjct: 296 ------------LVDGQLCPIVGRVSMDQITIRLPKFYPL--GTKVTLIGSDGDKEITAT 341

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           DVA+  GT NY+++  +  R  + Y
Sbjct: 342 DVAVYRGTINYEVVCLLSDRIPREY 366


>gi|311744950|ref|ZP_07718735.1| alanine racemase [Algoriphagus sp. PR1]
 gi|126577457|gb|EAZ81677.1| alanine racemase [Algoriphagus sp. PR1]
          Length = 384

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 174/389 (44%), Gaps = 57/389 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I   A + N   + +  G +   +AVVK NAYG G +++      AG++ F   S +E
Sbjct: 7   LEISAKAYRQNIRYIRSEIGPSTVISAVVKGNAYGHGIQQMVEIAEKAGIRHFSTFSSDE 66

Query: 68  GVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
             ++ R    ++ I +L  ++P +   I    +   +    +L     +  S G+     
Sbjct: 67  AWEVFRCSKKKSEIMILGMLYPEEMSDIIKAGINFYVYDFRRLELAVTISKSLGIQAKIH 126

Query: 126 LQVDTGFNRLGLS----------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           ++++TGF+R G            L+E +D           QL  + SH A A+  S+ V 
Sbjct: 127 IELETGFHRTGFEWSSREKLATYLKEQMDHI---------QLKGLCSHYAGAESVSNFVR 177

Query: 176 -SVQLERFRTLISHY--KGI---EASLASSSGILLGPNYHFQLTRPGISLYG-------- 221
              Q+E +    +++  KGI   +   A S+  L+ P     + R GI+ YG        
Sbjct: 178 VKNQIEVYNNFKTYFNQKGIHFEKYHTACSAATLIFPETIMDMVRIGIAGYGFWPTKETF 237

Query: 222 -----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
                   K NK +P++ +V+ ++ ++ I+    GE V YG      ++  +A+  +GYA
Sbjct: 238 FAKLNSLPKANK-NPLKRLVSWKSTVMSIKPVKMGEFVGYGNSFMALQNMRLAIVPVGYA 296

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
            GY   LS             G+  I+G    ++G +TM+    +IT+  +IEVGD + +
Sbjct: 297 HGYSRLLSN-----------QGQVLIRGKFCNVVGTVTMNTIALNITNLKNIEVGDEVVL 345

Query: 337 FG----PDIKLDDVALASGTTNYDLLVRI 361
            G     +I +   + ++   NY+LL R+
Sbjct: 346 IGKQGNKEITVASFSESTQQVNYELLTRL 374


>gi|315586885|gb|ADU41266.1| alanine racemase [Helicobacter pylori 35A]
          Length = 377

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 177/386 (45%), Gaps = 42/386 (10%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-----QLSLIISHLACADDPSSHVNSVQLE 180
           L++DTG +RLGL      +F      KK+      ++  I +HL+ AD         Q++
Sbjct: 127 LKIDTGMHRLGLEP----NFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMK 182

Query: 181 RFRTLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKS 229
            F   +     + IE       +S+GIL       N    L RPGI LYG   +  + +S
Sbjct: 183 AFNAFLEQLLEQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSSGMKES 242

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L    
Sbjct: 243 CPTILKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI 302

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD- 345
                      +  I   + P++GK+ MD     + +++  + GD + +FG    K +D 
Sbjct: 303 -----------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDA 350

Query: 346 --VALASGTTNYDLLVRIGTRYAKFY 369
             +A    T  Y+ +  +  R  + Y
Sbjct: 351 SEIAALLNTIPYETISTLSKRLERVY 376


>gi|56707702|ref|YP_169598.1| alanine racemase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670173|ref|YP_666730.1| alanine racemase [Francisella tularensis subsp. tularensis FSC198]
 gi|254370208|ref|ZP_04986214.1| alanine racemase [Francisella tularensis subsp. tularensis FSC033]
 gi|81820797|sp|Q5NH94|ALR_FRATT RecName: Full=Alanine racemase
 gi|123359566|sp|Q14IP6|ALR_FRAT1 RecName: Full=Alanine racemase
 gi|56604194|emb|CAG45206.1| alanine racemase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320506|emb|CAL08589.1| alanine racemase [Francisella tularensis subsp. tularensis FSC198]
 gi|151568452|gb|EDN34106.1| alanine racemase [Francisella tularensis subsp. tularensis FSC033]
 gi|282158869|gb|ADA78260.1| alanine racemase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 365

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 48/380 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV--TSVE 66
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  + DFF    S+E
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHD--LVDFFAVANSLE 61

Query: 67  EGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSH 122
                R+        +++G+  +   EK+I +   + +     + +L   +K +   V  
Sbjct: 62  ---AFRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKV-- 116

Query: 123 PYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            YA + ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  R
Sbjct: 117 -YAHININTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNR 175

Query: 182 FRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHP 231
           F +++   KG+       L++S G L      + + RPGI  YG       D+ I +  P
Sbjct: 176 FDSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKP 235

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  +++   +II +++   GE V Y    +   D  +AV  IGY DG+P           
Sbjct: 236 IARLLSKVVKIITLQE---GEGVGYSLIYRGFEDEQLAVIPIGYGDGFPRE--------- 283

Query: 292 PSVFLGGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD--- 345
               LG +GF  I   M P+ G+++MD +T+    +   ++VGD +++     +  +   
Sbjct: 284 ----LGDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAF 339

Query: 346 -VALASGTTNYDLLVRIGTR 364
            +A  + T  YD++  +  R
Sbjct: 340 SIAKQTNTIEYDIMSTLNDR 359


>gi|261838314|gb|ACX98080.1| alanine racemase [Helicobacter pylori 51]
          Length = 377

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 184/383 (48%), Gaps = 36/383 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD +  +H  + Q++ F 
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRTLKGLEIEGIFTHLSNADSNIKTHAKN-QMKAFN 185

Query: 184 TLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP- 231
             +     + IE       +S+GIL       N    L RPGI LYG   ++ + ++ P 
Sbjct: 186 AFLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPT 245

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +  
Sbjct: 246 ILKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRI 302

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---V 346
             +        I   + P++GK+ MD     + +++  + GD + +FG    K +D   +
Sbjct: 303 QVA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEI 353

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T  Y+ +  +  R  + Y
Sbjct: 354 AALLNTIPYETISTLSKRLERVY 376


>gi|142467|gb|AAA22220.1| alanine racemase (EC 5.1.1.1) [Geobacillus stearothermophilus]
          Length = 386

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 161/386 (41%), Gaps = 41/386 (10%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N+F R    ++DL A+ +N  ++  L   +    AVVK NAYG G  ++A      G   
Sbjct: 2   NDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALERGPPP 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR    +A I VL    P    +     +   +     L   S L S  
Sbjct: 62  A-VAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGP 120

Query: 120 VSHPYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + L++DTG  RLG+  +E      AL   H  F      L  + +H A AD+ ++ 
Sbjct: 121 FPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHF-----VLEGLYTHFATADEVNTD 175

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTD----KIN 227
             S Q  RF  ++            A+S+  L  P+  F + R GI++YG       K  
Sbjct: 176 YFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPL 235

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P++   +  +R++ ++K   GE VSYG       +  I    IGYADG    +  L 
Sbjct: 236 LPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADG----VRRLQ 291

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
             H           + G   PI+G+I MD  M  +   L   VG  + + G      I +
Sbjct: 292 HFHV---------LVDGQKAPIVGRICMDQCMIRLPGPLP--VGTKVTLIGRQGDEVISI 340

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DDVA    T NY++   I  R  + +
Sbjct: 341 DDVARHLETINYEVPCTISYRVPRIF 366


>gi|315302294|ref|ZP_07873187.1| alanine racemase [Listeria ivanovii FSL F6-596]
 gi|313629339|gb|EFR97579.1| alanine racemase [Listeria ivanovii FSL F6-596]
          Length = 371

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 160/380 (42%), Gaps = 43/380 (11%)

Query: 9   LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +    L  N    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 14  IEIDRAAIRENIQNEQKHLPKNVAVWAVVKANAYGHGIIEVAKIAKEAGAKGFCVAILDE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHP 123
            + LR    +    ++ G    +     D NL         LT YS    + ++  V   
Sbjct: 74  ALALREAGFRDDFILVLGATRKE-----DANL--AARENISLTIYSEDWLEALNPEVPLK 126

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII----SHLACADDPSSHVNSVQL 179
             L++D+G  RLG+   E          K  G ++LI+    +H A AD   +     QL
Sbjct: 127 VHLKIDSGMGRLGIREAEE---AAQIEAKIAGNMNLILEGAYTHFATADQLETSYFDQQL 183

Query: 180 ERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP--MQ 233
            RF T++   + +      A+S+  LL     F   R GIS+YG T   +I  S P  ++
Sbjct: 184 ARFHTILRALNERPTFVHTANSAASLLQSQVGFDAIRFGISMYGLTPSIEIKASLPFKLK 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +     I+ +++   G+ VSYG     T    +A   IGYADG     SG        
Sbjct: 244 QALALYTEIVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGFHV----- 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   + G  VPI+G++ MD T+  +      + G  + I G D    +  DD A  
Sbjct: 299 -------LVNGEKVPIIGRVCMDQTIIKL--PYKFQTGSKVTIIGTDEANTVTADDAAEY 349

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++   +  R  + Y
Sbjct: 350 LDTINYEVTCMLTERIPRKY 369


>gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1]
 gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1]
          Length = 844

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 158/370 (42%), Gaps = 24/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++IDL A+++N  ++ +++G     AV+K +AYG G  + A A    G     V ++ E 
Sbjct: 484 VRIDLDAIRDNVRTLRSIAG-VPVMAVLKADAYGHGAVRAARAALAGGAVALAVATLGEA 542

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             LR     A I  L    P Q        +   +         + +   GV  P  ++V
Sbjct: 543 RTLREAGIGAPILALGYTPPWQVAQAARLGVAITVFDYDAARACAAVAETGVPVPVHVEV 602

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  R GLS+ E   F  +        +  + +H A AD         QL RFR+ +  
Sbjct: 603 DTGMARTGLSVDELGPFLRSLAGLPGVHVEGLYTHFADADAADPGAAEAQLRRFRSALDA 662

Query: 189 YKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
             G          A+S+ +L  P   F + RPGI+ YG   +  +     ++  ++  + 
Sbjct: 663 VTGAGLRPPVVHAANSAAMLRLPGARFDMVRPGIACYGLAPSPWVTLPAALRPALSFHSE 722

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  +R    G  VSYGG     R S IA   +GYADG            +P      +  
Sbjct: 723 VAQVRDLPPGTPVSYGGTFVTRRHSRIATIPVGYADGM---------RRAPPWR---EVL 770

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           ++G   P++G+I MD  M D+TD   +  GD + + G      I + +VA   GT +YD+
Sbjct: 771 VRGRRAPVVGRICMDYAMIDVTDHAEVRRGDLVTLIGVQGDACITVAEVASWLGTISYDV 830

Query: 358 LVRIGTRYAK 367
           +  I  R  +
Sbjct: 831 VATILPRVPR 840


>gi|24380196|ref|NP_722151.1| alanine racemase [Streptococcus mutans UA159]
 gi|81845200|sp|Q8DSF4|ALR_STRMU RecName: Full=Alanine racemase
 gi|24378201|gb|AAN59457.1|AE015010_6 putative alanine racemase [Streptococcus mutans UA159]
          Length = 371

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 170/376 (45%), Gaps = 40/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+K ++  ++++      +  +A+T AVVK NAYG G  ++A A+    V  F V++++E
Sbjct: 17  RIKFNIEQVQHH------IPKSAKTFAVVKANAYGHGAVQVAQAIQKQ-VDGFCVSNLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-----CGVSH 122
            ++LR       I +L  + P +  +    N   +  +V  L ++ K+ +      G+S 
Sbjct: 70  ALELRQAGLNDFILILGVLLPEEVALAKKEN---ITITVADLDWFDKVQTENIDLAGLS- 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+G+      +       K    ++ I +H A AD+ S+   S QLE F
Sbjct: 126 -VHVKVDSGMGRIGVRSTAEANQLIAGLQKAGATVNGIFTHFATADEASTVKFSQQLEMF 184

Query: 183 RTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVT 237
            TLIS   YK      ++S+  +   +      R GI +YG     + +   + ++  + 
Sbjct: 185 TTLISQLDYKPQTVHASNSATSIWHSDTVMNAVRLGIVMYGLNPSGNALELPYEVKPALE 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG+ V YG     ++  +I    +GYADG+   L G            
Sbjct: 245 LTSALVQVKEVQAGDTVGYGATYTASQAEIIGTVPVGYADGWTRDLQGFHV--------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G+   I+G+++MD     +  +  +  G  + + G D    I   DVA    T 
Sbjct: 296 ---LVNGHYCEIVGRVSMDQITIRLPKAYPL--GTKVTLIGQDGHETISATDVAEKRETI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  I  R  + Y
Sbjct: 351 NYEVLCLISDRVPRKY 366


>gi|296132181|ref|YP_003639428.1| alanine racemase [Thermincola sp. JR]
 gi|296030759|gb|ADG81527.1| alanine racemase [Thermincola potens JR]
          Length = 391

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 164/379 (43%), Gaps = 34/379 (8%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+ +N   +  ++   AR  AVVK NAYG G   ++      GV    V  ++E 
Sbjct: 27  EIDLGAIAHNLREIRRITQPQARIMAVVKANAYGHGAVPVSQVALQNGVSYLGVAMLDEA 86

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHPY 124
           ++LR     A I +L      Q +     N+   I ++    F S    KL      H  
Sbjct: 87  LELRRAGIDAPILILGYTPKEQAEEAVRHNVTQTIYTLEMARFVSEVGEKLRQRAKVH-- 144

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
            +++DTG  RLG  L  A           L  LS+  I +H A +D         Q + F
Sbjct: 145 -IKIDTGMTRLGF-LPGAETVEKIKEIAALPGLSVEGIFTHFAVSDIRDKAFTRQQFKLF 202

Query: 183 RTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQT 234
             + +    +G++  +   A++  I+  P  H  + R GISLYG   + +++++   ++ 
Sbjct: 203 TDMCAVLEREGVKIPIKHAANTGAIIDMPETHLDMVRLGISLYGLYPSPEVDRTKVSLKP 262

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ +A I  +++   G  VSYG        ++IA   IGYADGY   LS     H    
Sbjct: 263 ALSLKAGISHLKEVPRGVTVSYGRTYTTQEKTMIATIPIGYADGYSRLLS--SKAHV--- 317

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  I+G   P+ G I MD  M D+     +   D + + G      I  D++A   
Sbjct: 318 ------LIRGTRAPVAGVICMDQFMVDVGHIPDVAATDEVVLIGRQGDDCISADELAQLL 371

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++  +  R  + Y
Sbjct: 372 GTINYEIVCMLSERIPRVY 390


>gi|289434154|ref|YP_003464026.1| hypothetical protein lse_0787 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170398|emb|CBH26938.1| alr [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 368

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 159/380 (41%), Gaps = 43/380 (11%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID +A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRSAIRENIKNEQNKLPKNVVVWAVVKANAYGHGIIEVAKTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR    Q    ++ G    ++  +   N I        LT + +    GV     L+
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAHNNI-------SLTIFREDWLDGVHLETPLK 123

Query: 128 V----DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           V    D+G  RLG+ S +EA           +  L    +H A AD   +     QL +F
Sbjct: 124 VHLKIDSGMGRLGIRSAEEAEQIEAKIVQTDMFFLEGAYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQ 233
             ++   KG+++       A+S+  LL     F   R GIS+YG T  I    N    ++
Sbjct: 184 DAIL---KGLKSRPRFVHTANSAAALLQSQIGFDAVRFGISMYGLTPSIEIKSNLPFKLK 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +     ++ +++   G+ VSYG     T    +A   IGYADG     SG        
Sbjct: 241 PALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF------- 293

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  + G   PI+G++ MD T+  +      + G  + I G D    +  DD A  
Sbjct: 294 -----QVLVDGKKAPIIGRVCMDQTIIKL--PYEFQTGSKVTIIGMDHGNSVTADDAAKY 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++   +  R  + Y
Sbjct: 347 LDTINYEVTCLLTERIPRKY 366


>gi|217033976|ref|ZP_03439399.1| hypothetical protein HP9810_883g46 [Helicobacter pylori 98-10]
 gi|216943609|gb|EEC23057.1| hypothetical protein HP9810_883g46 [Helicobacter pylori 98-10]
          Length = 377

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 181/382 (47%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++ ++L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V ++ E
Sbjct: 8   VEVNTSSLRHNFGAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLYE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNSNASMLIDNDLSTMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++ + ++ P  
Sbjct: 187 FLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +   
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRIQ 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
            +        I   + P++GK+ MD     + +++  + GD + +FG    K +D   +A
Sbjct: 304 VA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
           +   T  Y+ +  +  R  + Y
Sbjct: 355 VLLNTIPYETISTLSKRLERVY 376


>gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 833

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 163/387 (42%), Gaps = 42/387 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           E L  K+  T L+ N  +M A        L  + +   +VK +AYG G  +IA  L    
Sbjct: 464 EELEKKVHETILEVNLGAMIANLNYYRSRLRPDTKMVCMVKASAYGAGSYEIAKTLQEHH 523

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYS 113
           V    V   +EG +LR     A I ++   +P     K +FD  L P + S   L     
Sbjct: 524 VDFLAVAVADEGSELRKAGITASIIIM---NPEMTAFKTMFDYKLEPEVYSFHLLDALIK 580

Query: 114 KLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS- 171
           +    G+++ P  +++DTG +RLG + ++          +       + SH   +D    
Sbjct: 581 EAEKEGITNFPIHIKLDTGMHRLGFAAKDMPRLIERLKGQNAVIARSVFSHFVGSDAAQF 640

Query: 172 SHVNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
                 Q+E F       +      I   + +S+GI   P   F + R GI LYG    I
Sbjct: 641 DAFTRGQIEMFEAASMQLQEAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYG-VSPI 699

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           + S  +  V T +  I+ IR     + V Y  +  LTR+S IA   IGYADG    L   
Sbjct: 700 DNS-IINNVSTLKTTILQIRDVPQEDTVGYSRKGHLTRNSRIAALPIGYADGLNRHL--- 755

Query: 287 DSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
                      G G     + G   P +G I MD+ M D+TD +  + GD ++IFG  + 
Sbjct: 756 -----------GNGHAYCLVNGQRAPYVGNICMDVCMIDVTD-IDCKEGDAVEIFGDHLP 803

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  ++    T  Y++L  I TR  + Y
Sbjct: 804 ITVLSDILETIPYEVLTSISTRVKRIY 830


>gi|260890257|ref|ZP_05901520.1| alanine racemase [Leptotrichia hofstadii F0254]
 gi|260859877|gb|EEX74377.1| alanine racemase [Leptotrichia hofstadii F0254]
          Length = 300

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 143/306 (46%), Gaps = 49/306 (16%)

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEA 142
           I P   K + + N+   I +  QL+ Y K++     +      ++V++G NRLG +  E 
Sbjct: 6   IEPKNLKYVIENNVEFTIFNFSQLSDYLKILDKSFENRVLKIHIKVNSGMNRLGFNENEI 65

Query: 143 LDFTH-------NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------- 187
           L+          NS N KL  +S I SH++ A++        Q+E++  ++         
Sbjct: 66  LELIEKIKKHEINSKNNKLEIIS-IFSHISDAENQIE--TEKQVEKYENILKIFDKNNVK 122

Query: 188 -HYKGIEASLASSSGILL--GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
             YK ++AS      +L   G  Y++   R G++LYG  + ++    +  V+T +++II 
Sbjct: 123 YQYKHLQAS-----PLLFKYGQKYNYDFARVGMALYG-MEPLSYDVGLLDVITVKSQIIN 176

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           IR     + +SYG +  + RDS I + +IGYA G+   +     E+S   ++     I  
Sbjct: 177 IRNVKKNDKISYGSKGIVNRDSKIGIVSIGYAHGFQKQI-----ENSEEAYV----LINE 227

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----------PDIKLDDVALASGTTN 354
               I+G+I MDM   D+TD  ++EV D + I G            I L  VA  +GT  
Sbjct: 228 KKAKIVGEICMDMIFIDLTDIENVEVNDEVVIIGSQKNVENEITEKITLRQVAKWAGTIQ 287

Query: 355 YDLLVR 360
            D+L +
Sbjct: 288 DDVLTK 293


>gi|226365649|ref|YP_002783432.1| alanine racemase [Rhodococcus opacus B4]
 gi|226244139|dbj|BAH54487.1| alanine racemase [Rhodococcus opacus B4]
          Length = 400

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 155/348 (44%), Gaps = 40/348 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N   +   +  A   AVVK + Y  G   +A A   AG  +  VT+V E + 
Sbjct: 32  VDLDAIAHNVRILRDSARGAAMMAVVKADGYNHGAVAVARAALAAGASELGVTTVSEALT 91

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK---------LMSCGVS 121
           LR     A   VL  +H        D +  P I++  +L   S              G  
Sbjct: 92  LRRAGIDAP--VLAWLH------TVDADFAPAIAADVELGVSSPRHLAAVVAAARRVGTP 143

Query: 122 HPYALQVDTGFNRLGLSLQEA----LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
               ++VDTG NR G++  E     +D         + +L  I SHLA AD+P       
Sbjct: 144 AIVTMKVDTGLNRNGVAPDELAQVLVDLARAQAEGSV-RLRGIFSHLAHADEPHHAWIDS 202

Query: 178 QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-P 231
           Q +R    I+  K  G+      L++S+  L  P+  F + RPGI++YG +         
Sbjct: 203 QRDRLVDAIADAKRHGLVPEVVHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPELGQFG 262

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T  +R+ L++K  AGE VSYG Q    RD+ +A+  +GYADG P +LSG      
Sbjct: 263 LRPAMTLRSRVALVKKVAAGEGVSYGHQWVAPRDTTVALLPLGYADGLPRSLSG-----R 317

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFG 338
             V LG +        P +G++ MD  + D+  D   +  GD    FG
Sbjct: 318 FEVQLGAE------RRPGIGRVCMDQVVVDLGPDGGGVREGDTAVFFG 359


>gi|290579829|ref|YP_003484221.1| putative alanine racemase [Streptococcus mutans NN2025]
 gi|254996728|dbj|BAH87329.1| putative alanine racemase [Streptococcus mutans NN2025]
          Length = 371

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 159/354 (44%), Gaps = 34/354 (9%)

Query: 30  ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89
           A+T AVVK NAYG G  ++A A+    V  F V++++E ++LR       I +L  + P 
Sbjct: 33  AKTFAVVKANAYGHGAVQVAKAIQKQ-VDGFCVSNLDEALELRQAGLNDFILILGVLLPE 91

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMS-----CGVSHPYALQVDTGFNRLGLSLQEALD 144
           +  +    N   +  +V  L ++ K+ +      G+S    ++VD+G  R+G+      +
Sbjct: 92  EVALAKKEN---ITITVADLDWFDKVQTENIDLAGLS--VHVKVDSGMGRIGVRSTAEAN 146

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH--YKGIEASLASSSGI 202
                  K    ++ I +H A AD+ S+   S QLE F TLIS   YK      ++S+  
Sbjct: 147 QLIAGLQKAGATVNGIFTHFATADEASTVKFSQQLEMFTTLISQLDYKPQTVHASNSATS 206

Query: 203 LLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
           +   +      R GI +YG     + +   + ++  +   + ++ +++  AG+ V YG  
Sbjct: 207 IWHSDTVMNAVRLGIVMYGLNPSGNALELPYEVKPALELTSALVQVKEVQAGDTVGYGAT 266

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
              ++  +I    +GYADG+   L G                + G+   I+G+++MD   
Sbjct: 267 YTASQAEIIGTVPVGYADGWTRDLQGFHV------------LVNGHYCEIVGRVSMDQIT 314

Query: 320 FDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             +  +  +  G  + + G D    I   DVA    T NY++L  I  R  + Y
Sbjct: 315 IRLPKAYPL--GTKVTLIGQDGHETISATDVAEKRETINYEVLCLISDRVPRKY 366


>gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
 gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
          Length = 830

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 160/377 (42%), Gaps = 36/377 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV--VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   A+  +  T  +  VK +AYG G  +IA  L    V    V   +
Sbjct: 471 LEVNLGAMVENLNHYRAMLRHPETKVICMVKASAYGAGSYEIAKTLQEHHVDYLAVAVAD 530

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-PY 124
           EG +LR     + I ++        K +FD  L P + +   L    K     G+++ P 
Sbjct: 531 EGSELRKAGITSSIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 589

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF- 182
            +++DTG +RLG  + E          +       + SH   +D P        Q+E F 
Sbjct: 590 HVKLDTGMHRLGFGIDEIPLLIRRLKAQNAVIARSVFSHFVGSDSPQFDSFTRQQIELFE 649

Query: 183 ------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
                 +   SH   I   + +++GI   P   F + R GI LYG    I+ S  +  V 
Sbjct: 650 KGSQELQAAFSH--KILRHICNTAGIERFPGAQFDMVRLGIGLYG-VSPIDNS-IIHNVS 705

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR   A + V Y  +  L R S IA   IGYADG    L             
Sbjct: 706 TLKTTILQIRDVPAEDTVGYSRKGHLERPSRIAAIPIGYADGLNRHL------------- 752

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G+G     + G   P +G I MD+ M D+TD +    GD   IFG D+ +  ++    T
Sbjct: 753 -GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFGDDLPITVLSDKLDT 810

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I TR  + Y
Sbjct: 811 IPYEVLTSISTRVKRVY 827


>gi|94269682|ref|ZP_01291535.1| Alanine racemase region [delta proteobacterium MLMS-1]
 gi|93451122|gb|EAT02055.1| Alanine racemase region [delta proteobacterium MLMS-1]
          Length = 378

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 171/384 (44%), Gaps = 42/384 (10%)

Query: 11  IDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID  AL++N+  +  L S +    AVVK +AYG G    A A   AG   F V +VEEGV
Sbjct: 10  IDRGALRHNYRLLRRLLSPDVGIMAVVKADAYGHGLVPSATAFAVAGAACFGVATVEEGV 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI--SSVPQLTFYSKLMSCGVSHPYALQ 127
            LR    +  I VL G+ P         NL PV+  S++P      + ++        L+
Sbjct: 70  ALRQAGIEGEIVVLLGLGPEGVVEAVSRNLSPVVFDSAIPA-ALSRQAVAGNREVGVHLK 128

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VD G  RLGL+   AL            +L+ ++SH   AD       +    ++R L +
Sbjct: 129 VDLGMGRLGLAPAAALQLAAEIHRLPGLRLAGLLSHFPLAD--QREAAAACRRQWRQLAA 186

Query: 188 HYKGIEA--------SLASSSGILLGPNYHFQLTRPGISLYG---------GTDKINKSH 230
             + + A         LA+S+G+L        L RPG+SLYG         G D      
Sbjct: 187 IGEEVAALGGGRPRLHLANSAGLLRFAEARGDLVRPGLSLYGYSPLDFPVAGMDWAE--- 243

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +  ++RI+ I++  AG  +SYG +   T  + +AV  +GYADGYP  +SG     
Sbjct: 244 -LRPAMALKSRIMQIKELPAGSGISYGHRFVTTGPTRLAVIPLGYADGYPRGVSG----- 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
              V +GGK       VP+ G I M+  + +I    +  VGD +   G      I   ++
Sbjct: 298 RALVLIGGK------RVPLRGTICMNACLAEIDAVPAARVGDEVVFMGRQGEEVIDAAEI 351

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A    T  Y++L R G    + Y 
Sbjct: 352 AGWHQTIPYEILCRFGAANKREYV 375


>gi|184156444|ref|YP_001844783.1| alanine racemase [Acinetobacter baumannii ACICU]
 gi|260557641|ref|ZP_05829855.1| alanine racemase [Acinetobacter baumannii ATCC 19606]
 gi|183208038|gb|ACC55436.1| Alanine racemase [Acinetobacter baumannii ACICU]
 gi|260408814|gb|EEX02118.1| alanine racemase [Acinetobacter baumannii ATCC 19606]
          Length = 367

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 169/382 (44%), Gaps = 58/382 (15%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  +EE  +
Sbjct: 9   IHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDLEEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +R       I +L GI   Q+  +FD     L   I S  Q+ +  +       HPY  Q
Sbjct: 67  IRALGWTGPILLLEGIFSPQD--LFDCVQYQLSFTIHSEAQIEWVEQ-------HPYPAQ 117

Query: 128 VD------TGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV- 177
            D      +G NRLG   Q   +A +  +N  N  + +++ ++ H + AD        + 
Sbjct: 118 FDVFLKMNSGMNRLGFKPQHYVQAWERLNNLAN--VAKITHMM-HFSDADGDRFGQQGID 174

Query: 178 -QLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP- 231
            Q+  F  ++    G E S+++S+ IL    Y  QL     R GI LYG +     +H  
Sbjct: 175 YQITAFEEIVKDLPG-ERSVSNSAAIL---RYQDQLKSDYVRSGIMLYGSSPDY-PTHSI 229

Query: 232 ----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  ++  + II ++     E V YG      +   I + A GYADGY        
Sbjct: 230 ADWGLQPTMSLRSEIISVQHLEPNESVGYGSNFVAEQPITIGIVACGYADGY-------- 281

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IK 342
              SP+   G    +       +G+++MDM   D+T   S +VG  + ++G       + 
Sbjct: 282 QRISPT---GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLS 338

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           +DDVA++SGT  Y+L+  +  R
Sbjct: 339 IDDVAVSSGTVGYELMCAVTAR 360


>gi|304390969|ref|ZP_07372921.1| alanine racemase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304325852|gb|EFL93098.1| alanine racemase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 442

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 183/442 (41%), Gaps = 88/442 (19%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S   +R  ++L+A + N   M   + +++  A+VK NAYG G E++A A   AG +   V
Sbjct: 7   SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66

Query: 63  TSVEEGVKLRLY-------------TP-----QARIF--VLYGIHPGQEKIIFD------ 96
               E  +LR Y             TP     ++R++     G+       I        
Sbjct: 67  AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYAPH 126

Query: 97  TNLIPVI--------SSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGLSLQE---A 142
           T+L+PV+        S++ QL   S+  +C  +   A   L+VDTG  R G + ++    
Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSR--ACDAAGKRARLHLKVDTGLCRAGATDEDFPVL 184

Query: 143 LDFTHNSFNKKLGQLSLIISHLA---CADDPSSHVNSVQLERFRTL--ISHYKGIEASL- 196
                      L ++S + SHLA        +      QL+ F     ++   G+   L 
Sbjct: 185 CKLARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLR 244

Query: 197 --ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALA 250
             A+++GI+  P  H+ L R GIS YG +     +   Q     V+  E  ++ +++   
Sbjct: 245 HIAATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVMRLETNVVQVKRVEK 304

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           G  VSYGG+        + +  +GYADG    L  L           G+ +IKG   PI+
Sbjct: 305 GAAVSYGGEWVAPGPRWLGLLPVGYADG----LHRLAKNR-------GETWIKGRRAPIV 353

Query: 311 GKITMDMTMFDITDSLS---------IEVGDYIQIFG-PDIKL-------------DDVA 347
           G+I MD  + D+  ++          +E G+   IFG P  +L             DD A
Sbjct: 354 GRIPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDRLLGGIPGVPALPTADDWA 413

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             + T NY+++  I     + Y
Sbjct: 414 EWTDTINYEVITSISPNVPRVY 435


>gi|118472399|ref|YP_885954.1| alanine racemase [Mycobacterium smegmatis str. MC2 155]
 gi|3913029|sp|P94967|ALR_MYCSM RecName: Full=Alanine racemase
 gi|166969419|sp|A0QSR6|ALR_MYCS2 RecName: Full=Alanine racemase
 gi|1813550|gb|AAC45589.1| D-alanine racemase [Mycobacterium smegmatis]
 gi|118173686|gb|ABK74582.1| alanine racemase [Mycobacterium smegmatis str. MC2 155]
          Length = 389

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 153/334 (45%), Gaps = 45/334 (13%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+ +N   +  L+G+A   AVVK +AYG G   +A     AG     V ++ E + 
Sbjct: 20  IDLGAIDHNVRVLRELAGSADVMAVVKADAYGHGALPVARTALAAGAAALGVATIPEALA 79

Query: 71  LR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM---------SC 118
           LR   +  P     VL  +HP        T+  P I++  ++   S+             
Sbjct: 80  LREGGITAP-----VLAWLHP------PGTDFAPAIAADVEVAVSSRRQLEQVTAAAAEV 128

Query: 119 GVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           G +    ++VDTG +R G+      E LD    +      ++  ++SHL   DDP +  N
Sbjct: 129 GRTATVTVKVDTGLSRNGVGAADYPEVLDVLRRAQADGAIRVRGLMSHLVHGDDPENPFN 188

Query: 176 SVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            +Q +R   +  + +  G++   A L +S   +  P+  F++ RPGISLYG +    +  
Sbjct: 189 GLQGQRLADMRVYAREHGVDYEVAHLCNSPAAMTRPDLAFEMVRPGISLYGLSPIPERGD 248

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG-LDS 288
             ++  +T +  + L+R   AG+ VSYG +    RD+ + +  IGYADG    LSG +D 
Sbjct: 249 MGLRPAMTLKCPVALVRSVHAGDGVSYGHRWVADRDTTLGLLPIGYADGVYRALSGRIDV 308

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
                        IKG     +G+I MD  + D+
Sbjct: 309 ------------LIKGRRRRAVGRICMDQFVVDL 330


>gi|311107365|ref|YP_003980218.1| alanine racemase [Achromobacter xylosoxidans A8]
 gi|310762054|gb|ADP17503.1| alanine racemase [Achromobacter xylosoxidans A8]
          Length = 375

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 154/349 (44%), Gaps = 39/349 (11%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AV+K NAYG G E+       A  Q   +  ++E V+ R       I +L G   P    
Sbjct: 41  AVIKANAYGHGIEQAVAGFSKA--QGLAMLDLDEAVRCREAGWGGPILLLEGFFEPSDLD 98

Query: 93  IIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSL-------QEALD 144
           ++   +L   + +  QL   ++   S  V     L++++G NRLG S        + A+ 
Sbjct: 99  LVDRYHLSTTVHNREQLDMLARARFSRRVD--IMLKLNSGMNRLGFSPAAYAAAHERAML 156

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSG--- 201
                    +G+++    H ACAD P   VN  QL  F ++     G  +   S++    
Sbjct: 157 LQQQGVLGSVGKMT----HFACADGPQG-VNE-QLALFNSVTHKMPGAISVCNSAATLRF 210

Query: 202 --ILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSY 256
             I +         RPGI LYG +   D    S  ++  ++  + II ++   AG+ V Y
Sbjct: 211 AEIAVASETQAHWVRPGICLYGASPFADAEASSFGLKPAMSLRSEIIAVQDLKAGDSVGY 270

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           G   +  R   I + A GYADGYP         H+ +   G    + G    ++G+++MD
Sbjct: 271 GAIFRADRSMRIGIVACGYADGYP--------RHATT---GTPVVVAGIRTQLVGRVSMD 319

Query: 317 MTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTR 364
           M + D+    +  VG  + ++G +   +D+VA A+GT  Y+LL  +  R
Sbjct: 320 MLIVDLGPVPAAGVGSPVSLWGEEGPSVDEVAQAAGTIGYELLCALAPR 368


>gi|255657417|ref|ZP_05402826.1| alanine racemase [Clostridium difficile QCD-23m63]
 gi|296449013|ref|ZP_06890803.1| alanine racemase [Clostridium difficile NAP08]
 gi|296879836|ref|ZP_06903809.1| alanine racemase [Clostridium difficile NAP07]
 gi|296262106|gb|EFH08911.1| alanine racemase [Clostridium difficile NAP08]
 gi|296429125|gb|EFH14999.1| alanine racemase [Clostridium difficile NAP07]
          Length = 385

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 170/379 (44%), Gaps = 38/379 (10%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  L+ N +++ N L  + +   V+K +AYG G  ++A  L    V    V    EG
Sbjct: 11  EINLDNLRFNLNNIKNLLEEDIKVCGVIKADAYGHGAVEVAKLLEKEKVDYLAVARTAEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           ++LR       I  L G  P +  E  I +   + V S            S G      +
Sbjct: 71  IELRQNGITLPILNL-GYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKACVHV 129

Query: 127 QVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQL 179
           ++D+G  R+G      S+QE ++        KL  + L  + +H A AD+ S      Q 
Sbjct: 130 KIDSGMTRIGFQPNEESVQEIIELN------KLEYIDLEGMFTHFATADEVSKEYTYKQA 183

Query: 180 ERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSH-P 231
             ++ +       G++ ++   ++S+ I+  P+    + R GI LYG   +D + K    
Sbjct: 184 NNYKFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLE 243

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +  +++I  I++   G  +SYG +   T    I    IGYADG+         + +
Sbjct: 244 LRPAMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIVTIPIGYADGFTRI------QKN 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALAS 350
           P V       IKG +  ++G+I MD  M  I   + I+VGD + +FG  ++  + +A   
Sbjct: 298 PKVL------IKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGEGEVTAERIAKDL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 352 GTINYEVLCMISRRVDRVY 370


>gi|307707478|ref|ZP_07643960.1| alanine racemase [Streptococcus mitis NCTC 12261]
 gi|307616430|gb|EFN95621.1| alanine racemase [Streptococcus mitis NCTC 12261]
          Length = 367

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 169/377 (44%), Gaps = 41/377 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A  + +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPEGTLKFAVVKANAYGHGAVAVATTIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-----CGVSHPY 124
           +LR      RI +L G+   + +++       +  +V  L +   L+       G++   
Sbjct: 72  ELRQAGLSKRILIL-GV--SEIEVVALAKEYDITLTVAGLEWIQALLDKEADLTGLT--V 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++D+G  R+G       +   +   +   ++  I +H A AD+ S    + QLERF+T
Sbjct: 127 HLKIDSGMGRIGFREAHEAEQAQDLLQQHGARVEGIFTHFATADEKSDDYFNTQLERFKT 186

Query: 185 LISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVV 236
           +++  KG+ E   AS+S   L   +H    F   R G ++YG     + ++  + ++  +
Sbjct: 187 ILAGMKGLPELIHASNSATTL---WHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +             
Sbjct: 244 TLESALVHVKTVSAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFAV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
                + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT
Sbjct: 296 ----LVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  +  R  + Y
Sbjct: 350 INYEVVCLLSDRIPREY 366


>gi|298345414|ref|YP_003718101.1| alanine racemase [Mobiluncus curtisii ATCC 43063]
 gi|298235475|gb|ADI66607.1| alanine racemase [Mobiluncus curtisii ATCC 43063]
          Length = 442

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 183/442 (41%), Gaps = 88/442 (19%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S   +R  ++L+A + N   M   + +++  A+VK NAYG G E++A A   AG +   V
Sbjct: 7   SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66

Query: 63  TSVEEGVKLRLY-------------TP-----QARIF--VLYGIHPGQEKIIFD------ 96
               E  +LR Y             TP     ++R++     G+       I        
Sbjct: 67  AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYVPH 126

Query: 97  TNLIPVI--------SSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGLSLQE---A 142
           T+L+PV+        S++ QL   S+  +C  +   A   L+VDTG  R G + ++    
Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSR--ACDAAGKRARLHLKVDTGLCRAGATDEDFPVL 184

Query: 143 LDFTHNSFNKKLGQLSLIISHLA---CADDPSSHVNSVQLERFRTL--ISHYKGIEASL- 196
                      L ++S + SHLA        +      QL+ F     ++   G+   L 
Sbjct: 185 CKLARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLR 244

Query: 197 --ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALA 250
             A+++GI+  P  H+ L R GIS YG +     +   Q     V+  E  ++ +++   
Sbjct: 245 HIAATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVMRLETNVVQVKRVEK 304

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           G  VSYGG+        + +  +GYADG    L  L           G+ +IKG   PI+
Sbjct: 305 GAAVSYGGEWVAPGPRWLGLLPVGYADG----LHRLAKNR-------GETWIKGRRAPIV 353

Query: 311 GKITMDMTMFDITDSLS---------IEVGDYIQIFG-PDIKL-------------DDVA 347
           G+I MD  + D+  ++          +E G+   IFG P  +L             DD A
Sbjct: 354 GRIPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDRLLGGIPGVPALPTADDWA 413

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             + T NY+++  I     + Y
Sbjct: 414 EWTDTINYEVITSISPNVPRVY 435


>gi|317180214|dbj|BAJ58000.1| alanine racemase, biosynthetic [Helicobacter pylori F32]
          Length = 377

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 180/382 (47%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNANASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++ + ++ P  
Sbjct: 187 FLEQLLNQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +   
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRIQ 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
            +        I   + P++GK+ MD     + +++  + GD + +FG    K +D   +A
Sbjct: 304 VA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIPYETISTLSKRLERVY 376


>gi|15645557|ref|NP_207733.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori 26695]
 gi|3913027|sp|O25595|ALR_HELPY RecName: Full=Alanine racemase
 gi|2314079|gb|AAD07986.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori 26695]
          Length = 377

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 179/382 (46%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIVPKDACVMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNANASMLVDNDLSAMIFSLEQAEVFSQMALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 IKIDTGMHRLGLEPNFKSIETIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +     + IE       +S+GIL       N    L RPGI LYG   ++ + +S P  
Sbjct: 187 FLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKESCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +   
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRIQ 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALAS 350
            +        I   + P++GK+ MD     + +++  + GD + +FG    K +D +   
Sbjct: 304 VA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIX 354

Query: 351 GTTN---YDLLVRIGTRYAKFY 369
              N   Y+ +  +  R  + Y
Sbjct: 355 ALLNTIAYETISTLSKRLERVY 376


>gi|299538299|ref|ZP_07051584.1| alanine racemase [Lysinibacillus fusiformis ZC1]
 gi|298726501|gb|EFI67091.1| alanine racemase [Lysinibacillus fusiformis ZC1]
          Length = 373

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 173/391 (44%), Gaps = 41/391 (10%)

Query: 1   MHSNEFLRLK---IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M + +F R     IDL A++ N  ++   L  N +  AVVK NAYG G   +A A   AG
Sbjct: 1   MKTQQFFRPTKAIIDLQAIQQNVKNLKEFLRPNVQIIAVVKANAYGHGDVAVARAALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVL------YGIHPGQEKIIFDTNLIPVISSVPQLT 110
                V + +E + +R +  +  I +L      +  +  Q++II        +     L 
Sbjct: 61  ATVLAVATPDEALHIRAHFEEPDILILGASPVSFAPYAAQQRIILTAFADDWMQQAASL- 119

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
               L+   +     +++D+G  R+G+ S QE L+      + +  +L  I +H A AD+
Sbjct: 120 ----LVDEALPLRLHIKIDSGMGRIGIRSEQELLELYQTIQSTENMELDGIFTHFATADE 175

Query: 170 PSS-HVN-SVQ-LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
             + H +  VQ  E+   +I +   +  +  +++ ++  P+  +   R GIS+YG +   
Sbjct: 176 EDTLHFDQQVQFFEKCLAVIPNKPRLVHASNTAASLVKDPHLQYDAVRFGISMYGLSPSA 235

Query: 227 NKSH----PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             +     P+    + E+ ++ +++  +G+ V YG       D  I    IGYADG    
Sbjct: 236 YVTSILPFPLLPAFSLESELVHVKQIKSGDSVGYGAIYVAPTDMWIGTIPIGYADGVIRK 295

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
           L G +              I G  +PI+G+I MD  M  +  +   ++G+ + + G    
Sbjct: 296 LGGQEV------------LIDGQRMPIVGRICMDQCMVALPKAY--DIGEKVTLIGRQGN 341

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             + +D+ A    T NY++   I TR  + Y
Sbjct: 342 TGVSIDEWATKLETINYEIPCIITTRVPRIY 372


>gi|329945781|ref|ZP_08293468.1| alanine racemase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528229|gb|EGF55207.1| alanine racemase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 446

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 173/417 (41%), Gaps = 69/417 (16%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL A+ +N   + A +      AVVK +AYG G   IA    +AG     V  + E
Sbjct: 32  RAVIDLEAVAHN-GRLLAQTAGVPWMAVVKADAYGHGLGPIALTALSAGASWLGVAQLAE 90

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--------- 118
            + LR    +A +        GQ   +  + L+PV+         S L +          
Sbjct: 91  ALTLRALLDEAGVARPVEEPSGQAPRVL-SWLLPVMDPARAACEDSPLRAALKADLDLSV 149

Query: 119 ----------------GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--- 159
                             +    L+VDTG +R G ++ E L     +  + + + ++   
Sbjct: 150 STLSQLEALAAAARAQATTARLHLKVDTGMSRGG-AMAEDLPALAAALRRAVDEGAVDVV 208

Query: 160 -IISHLACADDPSSHVNSVQLERFRTL--ISHYKGIEAS---LASSSGILLGPNYHFQLT 213
            + SHL+ AD+P+S      L R+R    I    G+  S   LA++ G+L  P     L 
Sbjct: 209 GLWSHLSRADEPTSGSTEEHLVRYRQAERIVCEAGLTPSIHHLAATGGLLWHPEARMDLV 268

Query: 214 RPGISLYGGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
           R GI LYG +   + +      ++  +  E+ ++ +++   G+ VSYGG      D  + 
Sbjct: 269 RAGIGLYGLSPDPSVTTGAELGLRPAMRLESELVQVKRIDVGQAVSYGGTWSAPTDRWVG 328

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS---- 325
           +  +GY+DG P   S             G   I G M  I+G++ MD  + D+  +    
Sbjct: 329 LVPLGYSDGVPRAASST-----------GPVGIGGMMTAIVGRVCMDQVVIDLGPAQDET 377

Query: 326 -----LSIEVGDYIQIFG-PDI-------KLDDVALASGTTNYDLLVRIGTRYAKFY 369
                   +VGD   ++G PD         +D+ A A GT NY+++ R+G R  + Y
Sbjct: 378 GSSLPAPAQVGDTTVLWGAPDALGQEAVPTVDEWAQACGTINYEIVTRLGARIPRCY 434


>gi|227509299|ref|ZP_03939348.1| alanine racemase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191229|gb|EEI71296.1| alanine racemase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 374

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 162/387 (41%), Gaps = 48/387 (12%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL I+  A+ NN  +++           VVK N YG G  ++A    NAG + F V  +E
Sbjct: 10  RLIINQKAIYNNVKNAVTHTQSGTDLFVVVKANGYGHGAVQVARIAENAGAKGFCVALLE 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           EG++LR       I VL    P    I  D+++   +SS   L     +++   S     
Sbjct: 70  EGLELRQAGFTEPILVLGITEPTFAPIARDSHISLTVSSEEWLKTAGIILNQQDSKEKLH 129

Query: 124 YALQVDTGFNRLGL----SLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             L +DTG  R+G      LQEA   L    ++F+        I +H A AD        
Sbjct: 130 VHLAMDTGMGRIGFQTPDELQEAMLVLKKYQDTFD-----FEGIFTHFATADSKDDTYFQ 184

Query: 177 VQLERFRTLIS------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKI 226
            Q E ++ +++       Y  +  +  S    + G N    + R GIS YG    G +  
Sbjct: 185 YQYENYQKMLAVVDKRPKYVHVANTATSLWHKVCGAN----MVRYGISTYGLNPSGKEIT 240

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              + +   ++ +A +  ++K   G+ + YG   +   D  I    IGYADG+P  + G 
Sbjct: 241 RTPYTLFPAMSFQAGLSYVKKVPKGKSIGYGATYQTKEDEWIGTVPIGYADGFPRKMQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIK 342
                 SV + G+        PI+G++ MD  M  +      +    + I G     +I 
Sbjct: 301 ------SVLVDGQ------YCPIVGRVCMDQFMIKLPKQYGTDT--VVTIIGKSGAHEIT 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +DD+A   GT NY+++     R  + Y
Sbjct: 347 VDDIADQLGTINYEVVCGFSERLQRKY 373


>gi|296268597|ref|YP_003651229.1| alanine racemase [Thermobispora bispora DSM 43833]
 gi|296091384|gb|ADG87336.1| alanine racemase [Thermobispora bispora DSM 43833]
          Length = 381

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 169/385 (43%), Gaps = 47/385 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL A+++N   +   +G A   AVVK + YG G   +A     AG        V E +
Sbjct: 15  RVDLAAVRHNVSLLAEHAGGAELMAVVKADGYGHGAVPVARTCVAAGAARIGTALVTEAI 74

Query: 70  KLRLYTPQARIFVLYGIHPGQ---EKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYA 125
            LR     A I   +   PG+   E +  D  L    + ++ ++   ++    G +    
Sbjct: 75  ALRDAGITAPILA-WIFTPGERPDEALRRDIELSAGALWAIDEIAAAAR--RTGRTAKVH 131

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERF 182
           L+VDTG +R G +L +      ++   +     +++ I SHLACAD P + VN  QL  F
Sbjct: 132 LKVDTGMSRAGATLDDWPALLQHALAVQAEGSIEITGIWSHLACADTPENPVNERQLAVF 191

Query: 183 RTL--ISHYKGIEAS----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPM 232
                I+   G+ +     +A+S+  L  P   + + RPGI++YG +           P 
Sbjct: 192 DQALRIADKAGVSSGVIRHIANSAATLTLPAARYDMVRPGIAIYGLSPAPRHGDFGLRPA 251

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            T+V   AR+  +++  AG  VSYG      R + + +  +GYADG              
Sbjct: 252 MTLV---ARLSSVKRVAAGAGVSYGHTYVAERATTLGIVPLGYADG-------------- 294

Query: 293 SVFLGGKGFIK----GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344
            +   G   ++    G    I G++ MD    D+ D  + E GD + +FGP    +    
Sbjct: 295 -IMRAGSNRLEVLAAGRRRRIAGRVCMDQFAIDLGDDPA-EPGDEVILFGPGDHGEPTCQ 352

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           + A   GT  Y+++ +IG R  + +
Sbjct: 353 EWADQLGTITYEIVTKIGGRVPRIH 377


>gi|150020918|ref|YP_001306272.1| alanine racemase [Thermosipho melanesiensis BI429]
 gi|149793439|gb|ABR30887.1| alanine racemase [Thermosipho melanesiensis BI429]
          Length = 364

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 164/369 (44%), Gaps = 29/369 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL    +N          ++   V+K + YG G   +A A    G+  F V  +EE +
Sbjct: 11  EIDLKNYIHNLKYFEEKCAPSKVMPVIKADGYGHGAIYLAKAAEKYGIDYFAVAFLEEAL 70

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
            LR    ++ I V   I     ++  + N+   + S  Q   Y KL      H   + VD
Sbjct: 71  TLRKNGIKSDILVFNYIDKDFVELAVENNITITMLSWEQFELYKKLKKKPKVH---INVD 127

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFRTLI 186
           TG NR+G+  ++A  F +N+  +    +    +H A AD            Q + F  L 
Sbjct: 128 TGMNRVGIKPKDAKKF-YNALIENEFIVEGAYTHFAVADSTKKEDILFTKKQYKLFSELN 186

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIIL 244
            + K     + +S+G +LG        R GI+ YG   ++++ K   +++V+T ++ +  
Sbjct: 187 LNVKI--KHVNNSAGAILGIVPIENYVRIGIASYGLMPSNEV-KDENLKSVLTWKSIVSH 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++    GE +SYG   +      +A   +GYADGY   LS L           G+  I+G
Sbjct: 244 VKHIEPGESISYGRTFRAKEKMKVATIPVGYADGYWRHLSNL-----------GEVLIRG 292

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVR 360
               ILG++ MD  + +  D   ++VGD + + G      I  +++A   G+ NY++  R
Sbjct: 293 RRRKILGRVCMDQFVVEADD--EVQVGDEVVLIGSQGNEKITAEEIAQKVGSINYEVTCR 350

Query: 361 IGTRYAKFY 369
           I +R  + Y
Sbjct: 351 ISSRVPRIY 359


>gi|307707071|ref|ZP_07643868.1| alanine racemase [Streptococcus mitis SK321]
 gi|307617597|gb|EFN96767.1| alanine racemase [Streptococcus mitis SK321]
          Length = 367

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 168/377 (44%), Gaps = 41/377 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKFAVVKANAYGHGAVAVATAIQDE-VDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVL-----YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +LR      RI +L       +   +E   +D  L        Q+    +    G++   
Sbjct: 72  ELRQAGLSKRILILGVSEIEAVSLAKE---YDITLTVAGLEWIQVLLDKEADLAGLT--V 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++D+G  R+G       +   +   +    +  I +H A AD+ S    + QLERF+T
Sbjct: 127 HLKIDSGMGRIGFREAGEAEQAQDLLKEHGAGVEGIFTHFATADEESDTYFNEQLERFKT 186

Query: 185 LISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVV 236
           +++  KG+ E   AS+S   L   +H    F   R G ++YG     + ++  + ++  +
Sbjct: 187 ILASMKGLPELIHASNSATTL---WHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV +
Sbjct: 244 TLESAMVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVLV 297

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G+        PI+G+++MD     +     +  G  + + G     +I    VA   GT
Sbjct: 298 DGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  +  R  + Y
Sbjct: 350 INYEVVCLLSDRIPREY 366


>gi|53712185|ref|YP_098177.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis YCH46]
 gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46]
          Length = 848

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 160/384 (41%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           +E L LK+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L   
Sbjct: 478 SEELELKVHETILEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEH 537

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
                 V   +EG  LR     A I ++        K +FD  L P + +   L    K 
Sbjct: 538 HADYLAVAVADEGSDLRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIKA 596

Query: 116 MSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-S 172
               G+++ P  +++DTG +RLG   ++         N+       + SH   +D     
Sbjct: 597 AEKEGITNFPIHVKLDTGMHRLGFEEKDIPQLIRRLKNQNALIPRSVFSHFVGSDSAQFD 656

Query: 173 HVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q+ER+  +    +      I   + +++GI   P   F + R GI LYG    I+
Sbjct: 657 AFTRQQIERYEKMSKELQDAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYG-ISPID 715

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            S  +  V T +  I+ IR     + V Y  +  L R S IA   IGYADG    L    
Sbjct: 716 NS-IINNVSTLKTTILQIRDVAEEDTVGYSRKGHLIRPSRIAAIPIGYADGLNRHLG--- 771

Query: 288 SEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                     G G+  + G   P +G I MD+ M D+TD +    GD   IFG ++ +  
Sbjct: 772 ---------CGHGYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFGDELPITA 821

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           ++ A  T  Y++L  I TR  + Y
Sbjct: 822 LSDALETIPYEVLTGISTRVKRVY 845


>gi|325845425|ref|ZP_08168718.1| alanine racemase [Turicibacter sp. HGF1]
 gi|325488531|gb|EGC90947.1| alanine racemase [Turicibacter sp. HGF1]
          Length = 380

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 161/369 (43%), Gaps = 27/369 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL A+  N   +  L  N +  AVVK N YG G  +++     AGV +  V+ ++E +
Sbjct: 10  EVDLDAIVYNVQQIKKLHPNKKIFAVVKANGYGHGDVEVSRVALLAGVTNLAVSGLDEAL 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
            LR    +A I VL         I    N   +  +     + SKL+   +  P    L+
Sbjct: 70  GLRKAGIEAPILVLGMTRLKDVSIAAQYN---IALTAHDECWISKLVELPLETPVKVHLK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLGL+ +E +  T          +L  + +H+A AD  + ++   Q++ F +LI
Sbjct: 127 IDSGMHRLGLTTKEKVKETFELLKAAPKVELEGVFTHMATADCDADYL-EYQIKTFESLI 185

Query: 187 S--HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYG---GTDKINKSHPMQTVVTAEA 240
                  I+     ++  LL   + F    R G+ LYG       I     ++  +   +
Sbjct: 186 EDLDLSSIKYVHIENTATLLQREFEFDHAIRLGLGLYGINPDAKFIPLEFDLKPALKLYS 245

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I  +++   G+ V YG       D  I V  IGYADG+     G +             
Sbjct: 246 KITQVKRINKGDKVGYGATYTAENDEWIGVVPIGYADGWIRAHQGRNV------------ 293

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            ++G    I+G++ MD  M  +     +E+G  + + G  + ++ VA   GT +Y++L  
Sbjct: 294 IVEGKECEIIGRVCMDQLMIRLPH--EVEMGTMVTLIGDGMPVERVADEIGTISYEILCM 351

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 352 LSDRVPRVY 360


>gi|293374646|ref|ZP_06620961.1| alanine racemase [Turicibacter sanguinis PC909]
 gi|292646736|gb|EFF64731.1| alanine racemase [Turicibacter sanguinis PC909]
          Length = 377

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 161/369 (43%), Gaps = 27/369 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL A+  N   +  L  N +  AVVK N YG G  +++     AGV +  V+ ++E +
Sbjct: 10  EVDLDAIVYNVQQIKKLHPNKKIFAVVKANGYGHGDVEVSRVALLAGVTNLAVSGLDEAL 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--LQ 127
            LR    +A I VL         I    N   +  +     + SKL+   +  P    L+
Sbjct: 70  GLRKAGIEAPILVLGMTRLKDVSIAAQYN---IALTAHDECWISKLVELPLETPVKVHLK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLGL+ +E +  T          +L  + +H+A AD  + ++   Q++ F +LI
Sbjct: 127 IDSGMHRLGLTTKEKVKETFELLKAAPNVELEGVFTHMATADCDADYL-EYQIKTFESLI 185

Query: 187 S--HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYG---GTDKINKSHPMQTVVTAEA 240
                  I+     ++  LL   + F    R G+ LYG       I     ++  +   +
Sbjct: 186 EDLDLSSIKYVHIENTATLLQREFEFDHAIRLGLGLYGINPDATFIPLEFDLKPALKLYS 245

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I  +++   G+ V YG       D  I V  IGYADG+     G +             
Sbjct: 246 KITQVKRINKGDKVGYGATYTAENDEWIGVVPIGYADGWIRAHQGRNV------------ 293

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            ++G    I+G++ MD  M  +     +E+G  + + G  + ++ VA   GT +Y++L  
Sbjct: 294 IVEGKECEIIGRVCMDQLMIRLPH--EVEMGTMVTLIGDGMPVERVADEIGTISYEILCM 351

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 352 LSDRVPRVY 360


>gi|326793406|ref|YP_004311226.1| alanine racemase [Marinomonas mediterranea MMB-1]
 gi|326544170|gb|ADZ89390.1| Alanine racemase [Marinomonas mediterranea MMB-1]
          Length = 377

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 163/373 (43%), Gaps = 34/373 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL  + +N   +   SG     AVVK NAYG G  ++A A  +AG     V  ++E 
Sbjct: 8   VEVDLDRIAHNVSHIKEHSGYEHLFAVVKANAYGHGDVEVARAALDAGATHLAVAFLDEA 67

Query: 69  VKLRLYTPQARIFVL-----YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + LRL      I V+       I    E  I  T  +  +  + Q   Y      G +  
Sbjct: 68  LSLRLAIKDVPILVMGPVRVEDISLAAEHKIHIT--VHDMDWIMQAAHYR-----GPTVN 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++D+G +R+GL+    L   +++  + K   L  + +H A AD    +  S QL+  
Sbjct: 121 VHLKMDSGMHRIGLTSAATLALANSTLREHKHINLVGLFTHFATADSCKDYY-SQQLKNV 179

Query: 183 RTLIS--HYKGIEASLASSSGILL--GPNYHFQLTRPGISLYGGTDKINKSHP--MQTVV 236
             + +       E    S+S  LL   P  +    R GI++YG       S P  ++   
Sbjct: 180 AEMTAGLDLNTFEYVHQSNSAALLYQTPQPNANCARLGIAMYGLAPNNEMSSPVSLKQAF 239

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  +RI  ++  LAG+ V YG   +      IAV  IGYADG+      L    + SV  
Sbjct: 240 SLHSRITQVKSILAGDKVGYGATFEANAPMKIAVIPIGYADGW------LRYHQNRSV-- 291

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                IKG + PI+G+I MD +M  I +  +I  GD + +      +D  A    T NY+
Sbjct: 292 ----SIKGKLYPIVGRICMDQSMILIDE--TITTGDQVDLINDQCTVDMAAKDLQTINYE 345

Query: 357 LLVRIGTRYAKFY 369
           ++  I  R  + Y
Sbjct: 346 IVCSISDRVPRRY 358


>gi|241668785|ref|ZP_04756363.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877316|ref|ZP_05250026.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843337|gb|EET21751.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 365

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 175/379 (46%), Gaps = 46/379 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           LKI    L+NN   +    GNA+    VK NAYG G E+I    ++  + DFF V +  E
Sbjct: 4   LKISKQTLRNNIKIIREYVGNAKICFPVKANAYGHGIEEIVENTHD--LVDFFAVANSLE 61

Query: 68  GVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSHP 123
             ++   T +    +++G+  +   E+++ +   + +     + +L   +K ++  +   
Sbjct: 62  AFRVTAITKKP--VLVFGVIYYEYLERMVSENIRVSIQDYDDIEKLEQIAKELNKKIY-- 117

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             + V+TG NR+G+   +       ++N K   L  + SHLACAD+     N+ Q +RF 
Sbjct: 118 VHINVNTGMNRMGVCYNDVCRTIKRAYNSKWVVLEGVYSHLACADNRDHPTNTKQKKRFS 177

Query: 184 TLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK------INKSHPMQ 233
            ++ + K     I   L++S G L      + + RPGI +YG   +      I +  P+ 
Sbjct: 178 EIVEYAKELSQDIICHLSNSYGFLGDKEICYDMVRPGILIYGFLPEFYVERSIREIKPIA 237

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +++   +II + +   G+ V Y    +      +AV  IGY DG+P             
Sbjct: 238 RLLSKVVKIIELEE---GDGVGYSMIYRGFDGEKVAVIPIGYGDGFPRE----------- 283

Query: 294 VFLGGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD----- 345
             LG +GF  I   M P+ G+++MD +T+    +  +++VGD +++   DI  +      
Sbjct: 284 --LGDRGFVNIDNVMYPMAGRMSMDGLTVSLGHNEHNVKVGDVVELIS-DIPRNRNSAFL 340

Query: 346 VALASGTTNYDLLVRIGTR 364
           +A    T  YD++  +  R
Sbjct: 341 MAKQVNTIEYDIMSTLNDR 359


>gi|317182240|dbj|BAJ60024.1| alanine racemase, biosynthetic [Helicobacter pylori F57]
          Length = 377

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 180/386 (46%), Gaps = 42/386 (10%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++ ++L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSSSLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++LR +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELRSHFSKTPILIL-GYSPNANASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-----QLSLIISHLACADDPSSHVNSVQLE 180
           L++DTG +RLGL      +F      KK+      ++  I +HL+ AD         Q++
Sbjct: 127 LKIDTGMHRLGLEP----NFKSIEIIKKIRALKGLEIEGIFTHLSNADSNIKTHAKNQMK 182

Query: 181 RFRTLISHY--KGIEASLA---SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKS 229
            F   +     + IE       +S+GIL       N    L RPGI LYG   ++ + ++
Sbjct: 183 AFNAFLEQLLNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKET 242

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L 
Sbjct: 243 CPTILKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALG 299

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD- 345
           +    +        I   + P++GK+ MD     + +++  + GD   +FG    K +D 
Sbjct: 300 NRIQVA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEAILFGDKSAKANDA 350

Query: 346 --VALASGTTNYDLLVRIGTRYAKFY 369
             +A    T  Y+ +  +  R  + Y
Sbjct: 351 SEIAALLNTIPYETISTLSKRLERVY 376


>gi|301051975|ref|YP_003790186.1| alanine racemase [Bacillus anthracis CI]
 gi|300374144|gb|ADK03048.1| alanine racemase [Bacillus cereus biovar anthracis str. CI]
          Length = 389

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 161/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGKRVPIVGRVTMDQFMIQL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
 gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
          Length = 821

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 162/377 (42%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N  +  + L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKSETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-P 123
           G  LR       I ++   +P     K +FD  L P + S   L    K     GV++ P
Sbjct: 523 GSDLRKAGITCSIMIM---NPELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPS-SHVNSVQLER 181
             +++DTG +RLG + +E  +   +   K+   +   + SHL  +D          Q+E 
Sbjct: 580 IHIKLDTGMHRLGFAPEEIPELI-DRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEM 638

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P+  F + R GI LYG     N+   +  V 
Sbjct: 639 FEAASECLQEAFQHKILRHICNTAGIERYPDAQFDMVRLGIGLYGIDPFTNQI--INNVS 696

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I +    E V Y  +  L RDS IA   IGYADG    L             
Sbjct: 697 TLKTTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRL------------- 743

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G G     + G     +G I MD+ M D+TD +  + GD   IFG D+ +  ++    T
Sbjct: 744 -GNGHAYCLVNGQKASYVGNICMDVCMIDVTD-IDCKEGDKAIIFGDDLPVTVLSEILET 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +  R  + Y
Sbjct: 802 IPYEILTSVSNRVKRVY 818


>gi|169835830|ref|ZP_02869018.1| hypothetical protein cdivTM_01741 [candidate division TM7
           single-cell isolate TM7a]
          Length = 342

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 148/347 (42%), Gaps = 21/347 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I++  L +N   +  +    +  AV+K +AYG G  KI  AL   G+++F V + +E +
Sbjct: 6   EININNLYSNIDEIEKIVPKEKIIAVIKADAYGHGMLKICDALIKKGIKNFAVATSDEAL 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           K++       + +L  +      +I D  +  +++   ++ F  K     G +    +++
Sbjct: 66  KIKELHNDIMVLILGPVENEYMDLIADKKIYFMVTDFEEIEFLEKTGKENGKTVDVFIKI 125

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  R+G    E         N K      I SH + +D    +   +Q  +F+ +   
Sbjct: 126 DTGMGRVGFQESEVEQLNKILKNVKHINPIGIFSHFSSSDSNKEYT-KLQERKFKAMCEK 184

Query: 189 Y-KGIEA----SLASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSHPMQTVVTAEARI 242
              GI +     L +S G L          R GI +YGG TDK    +  + V++  A+I
Sbjct: 185 ISSGIPSIRYRHLHNSFGTLKFQESVQDFVRAGIIIYGGVTDKETAPYKFKPVMSLFAKI 244

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             I+       +SYG           A  +IGYADG    LS             G  F 
Sbjct: 245 SYIKTLKEDSFISYGNTYLGKAGETYATVSIGYADGVRRDLSN-----------KGYVFY 293

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVA 347
           KG+   I G++ MD  M  + D L  E   GD ++ FG +I + +VA
Sbjct: 294 KGHKCKIAGRVCMDQLMILLPDELKDEAKKGDVVEFFGENISVVEVA 340


>gi|228473937|ref|ZP_04058678.1| alanine racemase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274451|gb|EEK13292.1| alanine racemase [Capnocytophaga gingivalis ATCC 33624]
          Length = 367

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 162/371 (43%), Gaps = 22/371 (5%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVE 66
           L+I L  L++N   +   L    R  AVVK N+YG     +A  L    + D F V    
Sbjct: 6   LEIHLDNLQHNVRQLKKHLKEGTRFLAVVKANSYGNSSVAVAQYLEKKDLADEFAVAFTS 65

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPY 124
           EG++LR       I + +      E I+   NL P + S   +T +           +P+
Sbjct: 66  EGIELRKAGVTRPILIFHPQLVDFEDIV-RYNLEPTLYSKRLITHFIDFAKEKQLNQYPF 124

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFR 183
            L+ ++G NRLG S++E  +        +  ++    SHL  ++D  +      Q+  F+
Sbjct: 125 HLKCNSGMNRLGFSVEEIDEACELLKGHEELKVRTAFSHLLASEDLQARPFMEKQIALFK 184

Query: 184 T----LISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                L +H+   I     ++SGIL  P  HF + R GI +YG  +        + + T 
Sbjct: 185 AFQKKLENHFSHKIIYHNCNTSGILNYPEAHFDMVRSGIGMYGFANDPRLQKDFKPITTL 244

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ I  I     G+ V Y    +  +   IA  ++G+AD       GL+  +   V   G
Sbjct: 245 KSIISQIHTIQKGDYVGYNFGFQAQKPMEIATISVGHAD-------GLNRIYGKEV---G 294

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             FIK    PI+G + MDM M DIT  L  E G+ + IF      + +A  + T +Y+L+
Sbjct: 295 FVFIKDKKCPIVGNVCMDMIMVDIT-GLGCEEGEEVVIFDERHTSETLAETAKTISYELI 353

Query: 359 VRIGTRYAKFY 369
             +  R  + +
Sbjct: 354 TSLSRRIKRVF 364


>gi|225350823|ref|ZP_03741846.1| hypothetical protein BIFPSEUDO_02397 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158279|gb|EEG71521.1| hypothetical protein BIFPSEUDO_02397 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 527

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 175/408 (42%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNWHSMNALSG--NARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +D+ AL+NN   + ++ G  N+ TA   VVK +AYG G    A A    G          
Sbjct: 108 VDMAALRNNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGATWLGTAQSH 167

Query: 67  EGVKLRLYT--PQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FYSKLMSCGV 120
           E + LR     P  R  +L  ++ G       + D ++   + S+P +    +     G 
Sbjct: 168 EALLLRKAGIGPD-RCHILTWVYNGMAVPFDELIDNDIDISVGSLPGIDGVAAAARRLGK 226

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
           +    ++VD+GF R G        FT  +F+  L +L  +            SHLA AD 
Sbjct: 227 TARVHVKVDSGFGRNG--------FTPATFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 278

Query: 170 PS--SHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P     V S   Q+E F+      +  GI      LA+++  L     HF+LTRPGI LY
Sbjct: 279 PDVPEFVASTDRQIENFKDFTRRMEQAGIAPEIRHLANTAATLSRSEIHFELTRPGIGLY 338

Query: 221 GGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    +   +T +A++  ++   AG  +SYG       D+  A+  +GYA
Sbjct: 339 GYEADPAMGTPGTYGLTPAMTLQAQLGTVKDVEAGHGISYGRTYLTPSDTSTAIVPVGYA 398

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFIKGYMVPIL----GKITMDMTMFDI---TDSLSI 328
           DG   + SG D E +  V   GG   +     P L    G++ MD  M D+    + L +
Sbjct: 399 DGIHRSASGFDMEGAKHVVKPGGPVRVMTTEGPRLYRVSGRVCMDQFMLDLHGSAEKLGV 458

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +Q+FGP       +   DD   A+GT +Y++   +  R  + Y
Sbjct: 459 HEGDTVQLFGPGRGEDYAEPTADDWGRAAGTISYEIFTCLCNRIPRLY 506


>gi|119945753|ref|YP_943433.1| alanine racemase [Psychromonas ingrahamii 37]
 gi|119864357|gb|ABM03834.1| alanine racemase [Psychromonas ingrahamii 37]
          Length = 375

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 156/378 (41%), Gaps = 32/378 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  I L  L +N   +   +G       +K NAYG   E IA  L + G        + E
Sbjct: 10  RAIIHLDHLTHNMKVLQKKAGKRPLFPAIKANAYGHDAEIIAKHLISLGYTTLCTAHLSE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
             +L      A   +L          + D +  P++SS  QL   ++            +
Sbjct: 70  AAELVEKGVNATFIILSPTLAENSDYLLDYDFQPIVSSQVQLQALAQAARRRDKQITIHV 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII----SHLACADDPSSHVNSVQLERF 182
           +VDTG  R+G+   + L F     ++   Q  +II    SH   AD+ +   +  Q+  F
Sbjct: 130 KVDTGMGRMGVRPDQLLMF----LDECKAQPEIIIGGVCSHFPRADENNLSFSKTQINTF 185

Query: 183 RTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTV 235
             L    K     L   A+S+ +      H    RPGIS+YG    ++   P    ++ +
Sbjct: 186 TALKKETKAYNIPLYHIANSAALFALEEAHLDAIRPGISIYGLKPSVSMVVPELNDLKPI 245

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  +RI L+++ +    +SYG      + SLIA   IGY DG   +LS     +   V 
Sbjct: 246 MSLVSRITLLKEVVQDTGISYGHLHYTDKPSLIATIPIGYGDGLSRSLS-----NRIEVL 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD----IKLDDVALAS 350
           +G +   +      +G I MD  M D+T     + +GD + I G      I  DD+A   
Sbjct: 301 IGNERCRQ------IGNICMDQCMIDVTQLRGKVSIGDEVVIIGTQGSETITADDLAKKQ 354

Query: 351 GTTNYDLLVRIGTRYAKF 368
            T NY+++  I +R  + 
Sbjct: 355 HTVNYEIVTAISSRVPRI 372


>gi|257126593|ref|YP_003164707.1| alanine racemase [Leptotrichia buccalis C-1013-b]
 gi|257050532|gb|ACV39716.1| alanine racemase [Leptotrichia buccalis C-1013-b]
          Length = 365

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 160/374 (42%), Gaps = 29/374 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I++  L +N   +  +    +  AV+K +AYG G  KI  AL   G+++F V + +E +
Sbjct: 6   EININNLYSNIDEIEKIVAKDKIIAVIKADAYGHGMLKICDALIKKGIKNFAVATSDEAL 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQV 128
           K++       + +L  +      +I D N+  +++   ++ +        G +    +++
Sbjct: 66  KIKELHNDIMVLILGPVENEYMDLIADKNIYFMVTDFEEIEYLEKTGGKKGKTTDVFIKI 125

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACADDPSSHVNSVQLERFRT 184
           DTG  R+G    E  D      NK L   S I    I     + D       +Q  +F+ 
Sbjct: 126 DTGMGRVGFQESEVED-----LNKILKNSSHINPIGIFSHFSSSDSDKDYTKLQESKFKA 180

Query: 185 LISHY-KGIEA----SLASSSGILLGPNYHFQLTRPGISLYGGT-DKINKSHPMQTVVTA 238
           +      GI +     L +S G L   +      R GI LYGG  D+    +  + V++ 
Sbjct: 181 MCEKISSGIPSIKYRHLHNSFGTLKFQDSIEDFVRVGIILYGGVIDEETFPYKFKPVMSL 240

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A+I  I+       +SYG   K       A  +IGYADG    LS             G
Sbjct: 241 LAKISYIKTLKEDSFISYGNTYKGKAGGTYATVSIGYADGVRRDLSN-----------KG 289

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYD 356
             F KG+   I+G++ MD  M  + D L    + GD ++ FG +I + +VA    T +Y+
Sbjct: 290 YVFYKGHKCEIVGRVCMDQLMILLPDELKDMAKKGDIVEFFGENISVVEVADLCNTISYE 349

Query: 357 LLVRIGTRYAKFYT 370
           ++  I  R  + Y 
Sbjct: 350 IMCGISQRVPRIYV 363


>gi|60680368|ref|YP_210512.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis NCTC 9343]
 gi|60491802|emb|CAH06560.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis NCTC 9343]
 gi|301161901|emb|CBW21445.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis 638R]
          Length = 840

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 160/384 (41%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           +E L LK+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L   
Sbjct: 470 SEELELKVHETILEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEH 529

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
                 V   +EG  LR     A I ++        K +FD  L P + +   L    K 
Sbjct: 530 HADYLAVAVADEGSDLRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIKA 588

Query: 116 MSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-S 172
               G+++ P  +++DTG +RLG   ++         N+       + SH   +D     
Sbjct: 589 AEKEGITNFPIHVKLDTGMHRLGFEEKDIPQLIRRLKNQNALIPRSVFSHFVGSDSAQFD 648

Query: 173 HVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q+ER+  +    +      I   + +++GI   P   F + R GI LYG    I+
Sbjct: 649 AFTRQQIERYEKMSKELQDAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYG-ISPID 707

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            S  +  V T +  I+ IR     + V Y  +  L R S IA   IGYADG    L    
Sbjct: 708 NS-IINNVSTLKTTILQIRDVAEEDTVGYSRKGHLIRPSRIAAIPIGYADGLNRHLG--- 763

Query: 288 SEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                     G G+  + G   P +G I MD+ M D+TD +    GD   IFG ++ +  
Sbjct: 764 ---------CGHGYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFGDELPITV 813

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           ++ A  T  Y++L  I TR  + Y
Sbjct: 814 LSDALETIPYEVLTGISTRVKRVY 837


>gi|289706579|ref|ZP_06502929.1| alanine racemase [Micrococcus luteus SK58]
 gi|289556714|gb|EFD50055.1| alanine racemase [Micrococcus luteus SK58]
          Length = 401

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 172/401 (42%), Gaps = 67/401 (16%)

Query: 10  KIDLTALKNNWHSMNALSGNART--------AAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +IDL A++   H++  L    R          AVVK +AYG G   +A A   AG     
Sbjct: 16  RIDLAAVR---HNVGVLQERIRCPDGSRPLLTAVVKADAYGHGAVAVARAAAAAGADRLG 72

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI-----------IFDTNLIPVISSVPQLT 110
           V  V E + LR      R+ VL  +H G               +   +L  V  +V    
Sbjct: 73  VAHVREALALRAA--GVRLPVLAWLHTGATDFAAAVEAEVTLGVSGWDLDAVADAV---- 126

Query: 111 FYSKLMSCGVSHPYA-----LQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIIS 162
               L   G + P A     L+ DTG  R G   +    F   +   +   L ++  + S
Sbjct: 127 --CGLRGRGGAGPEARAVLHLKADTGLGRHGCPPERWPAFVERAAELEAAGLVRVEGVFS 184

Query: 163 HLACADDPSSHVNS-VQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPG 216
           HL  AD+P     +  QL RF  + +         +   LA++   L  P+ H  + R G
Sbjct: 185 HLGVADEPDRAAETTAQLLRFERMAAEAAETLGHPLLRHLANTPATLSRPDTHLDMVRVG 244

Query: 217 ISLYGGTDKINKS------HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAV 270
           + LYG +   + +       P  ++VT  A +   +   AG+ VSYG +      + + +
Sbjct: 245 LGLYGLSPFADVTAAELGLRPAMSLVTVLANV---KAVPAGQGVSYGFRHVTAEPTTLGL 301

Query: 271 AAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV 330
             +GYADG P  + G        V +GG+       VP++G+I MD  + D+    +   
Sbjct: 302 VPVGYADGVPRVVEGT------RVHVGGR------TVPVVGRIAMDQFVVDLGPDATDAP 349

Query: 331 GDYIQIFGP--DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           GD +++FGP   I +++ A A+GT NY+L+ RIG R  + +
Sbjct: 350 GDAVELFGPASGIPVEEWAAAAGTINYELVTRIGGRVDRQH 390


>gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16]
 gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16]
          Length = 848

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 160/384 (41%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           +E L LK+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L   
Sbjct: 478 SEELELKVHETILEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEH 537

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
                 V   +EG  LR     A I ++        K +FD  L P + +   L    K 
Sbjct: 538 HADYLAVAVADEGSDLRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIKA 596

Query: 116 MSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-S 172
               G+++ P  +++DTG +RLG   ++         N+       + SH   +D     
Sbjct: 597 AEKEGITNFPIHVKLDTGMHRLGFEEKDIPQLIRRLKNQNALIPRSVFSHFVGSDSAQFD 656

Query: 173 HVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q+ER+  +    +      I   + +++GI   P   F + R GI LYG    I+
Sbjct: 657 AFTRQQIERYEKMSKELQDAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYG-ISPID 715

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            S  +  V T +  I+ IR     + V Y  +  L R S IA   IGYADG    L    
Sbjct: 716 NS-IINNVSTLKTTILQIRDVAEEDTVGYSRKGHLIRPSRIAAIPIGYADGLNRHLG--- 771

Query: 288 SEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                     G G+  + G   P +G I MD+ M D+TD +    GD   IFG ++ +  
Sbjct: 772 ---------CGHGYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFGDELPITV 821

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           ++ A  T  Y++L  I TR  + Y
Sbjct: 822 LSDALETIPYEVLTGISTRVKRVY 845


>gi|315656254|ref|ZP_07909145.1| D-alanine racemase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315493256|gb|EFU82856.1| D-alanine racemase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 442

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 183/442 (41%), Gaps = 88/442 (19%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S   +R  ++L+A + N   M   + +++  A+VK NAYG G E++A A   AG +   V
Sbjct: 7   SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66

Query: 63  TSVEEGVKLRLY-------------TP-----QARIF--VLYGIHPGQEKIIFD------ 96
               E  +LR Y             TP     ++R++     G+       I        
Sbjct: 67  AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYAPH 126

Query: 97  TNLIPVI--------SSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGLSLQE---A 142
           T+L+PV+        S++ QL   S+  +C  +   A   L+VDTG  R G + ++    
Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSR--ACDAAGKRARLHLKVDTGLCRAGATDEDFPVL 184

Query: 143 LDFTHNSFNKKLGQLSLIISHLA---CADDPSSHVNSVQLERFRTL--ISHYKGIEASL- 196
                      L ++S + SHLA        +      QL+ F     ++   G+   L 
Sbjct: 185 CKLARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLR 244

Query: 197 --ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALA 250
             A+++GI+  P  H+ L R GIS YG +     +   Q     V+  E  ++ +++   
Sbjct: 245 HIAATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVMRLETNVVQVKRVEK 304

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           G  VSYGG+        + +  +GYADG    L  L           G+ +I+G   PI+
Sbjct: 305 GAAVSYGGEWVAPGPRWLGLLPVGYADG----LHRLAKNR-------GETWIRGRRAPIV 353

Query: 311 GKITMDMTMFDITDSLS---------IEVGDYIQIFG-PDIKL-------------DDVA 347
           G+I MD  + D+  ++          +E G+   IFG P  +L             DD A
Sbjct: 354 GRIPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDRLLGGIPGVPTLPTADDWA 413

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             + T NY+++  I     + Y
Sbjct: 414 KWTDTINYEVITSISPNVPRVY 435


>gi|259047269|ref|ZP_05737670.1| alanine racemase [Granulicatella adiacens ATCC 49175]
 gi|259036045|gb|EEW37300.1| alanine racemase [Granulicatella adiacens ATCC 49175]
          Length = 371

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 165/382 (43%), Gaps = 31/382 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +H N   R+ +DL+ +K N   + + L+ + +  AVVK NAYG G   +A A   AGVQ 
Sbjct: 5   IHRN--TRVVVDLSIIKQNISKLKSKLNPSKQVYAVVKANAYGHGMIPVAKAALEAGVQG 62

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSC 118
           F V +V+E + LR       + +L G+   ++  +  +N I   + SV  L   + L+  
Sbjct: 63  FCVANVDEALALREAGIMEPVLIL-GLSRVEDAPLLASNHITAAVDSVEWLLQAAPLLK- 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            +     + VD+G  R+G+  ++ L            +   + +H A AD+  +   + Q
Sbjct: 121 EIPLKVHVAVDSGMGRIGVVNEKELTEVEAVLRNGPFEFEAMFTHFATADEEDTAHLTKQ 180

Query: 179 LERFRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHP 231
            E+F  +I   +     +  ++S+  +        + R GI LYG     G   +     
Sbjct: 181 EEKFNGMIGELEERPPHIHCSNSAYAIWHSAGDSDIIRYGIGLYGINPSNGDLCVEDEEL 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +   +  E  ++ ++K   G+ VSYG   K      +A   IGYADGY            
Sbjct: 241 LTPALQWETEMVKVKKLEIGDTVSYGATYKAKEPQWVATLPIGYADGY------------ 288

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
              +  G+  + G   PI+G++ MD  M  +       VG  + + G     +I   ++A
Sbjct: 289 IRAYNKGEVIVDGVRCPIIGRVCMDQCMVRLPHEYP--VGTKVTLLGKNKEEEITAIELA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             + T  Y+++  I  R  + Y
Sbjct: 347 KRADTIAYEVICMISDRVKREY 368


>gi|313624465|gb|EFR94470.1| alanine racemase [Listeria innocua FSL J1-023]
          Length = 368

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 157/377 (41%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L       AVVK NAYG G  + A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNRLPDKVALWAVVKANAYGHGIIETAKIAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    +    ++ G    ++  +   N I V       +  LT  + L        
Sbjct: 71  ALALREAGFRNEFILVLGATRKEDANLAAKNNISVTVFREDWLNDLTLEAPLR------- 123

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G  RLG+ S +EA              L  I +H A AD   +     QL +F
Sbjct: 124 IHLKVDSGMGRLGIRSREEAQRIETTIALDHQMILEGIYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVV 236
           + ++     +      A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +
Sbjct: 184 QAILRSLTTRPTFVHTANSAASLLQPQIDFDAIRFGISMYGLTPSTEIKNSLPFELKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ +++   G+ VSYG     T    +A   IGYADG     SG           
Sbjct: 244 ALYTEMVHVKELSPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                ++G   PI+G+I MD T+  +      + G  + I G D    +  DD A   GT
Sbjct: 296 ----LVEGERAPIIGRICMDQTIIKLPREF--QTGTKVTIIGSDHGNKVTADDAAEYLGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++   +  R  + Y
Sbjct: 350 INYEVTCLLTERIPRKY 366


>gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 825

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 161/375 (42%), Gaps = 32/375 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   A+   N +   ++K + YG G  +IA  L +       V   +E
Sbjct: 466 LEVNLNAMIDNLNYYRAMMHPNTKLVCMIKADGYGAGAVEIAKTLQDHRADYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-HP 123
           G  LR     + I ++   +P     K +FD +L P + S   L    K     G++  P
Sbjct: 526 GATLRRNGISSNIMIM---NPEMTAFKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGFP 582

Query: 124 YALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181
             +++DTG +RLG   ++ +        N+       + SH   AD D   + +  Q E 
Sbjct: 583 VHIKLDTGMHRLGFDPEKDVPRLIERLHNQNALIPKSVFSHFVGADADQFDNFSQRQFEC 642

Query: 182 F-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           F       +    H+  I   + +S+GI   P     + R G+ LYG   + N    +  
Sbjct: 643 FDKGSKMLQAAFEHH--ILRHIDNSAGIEHFPQRQLDMCRLGLGLYGINPRNNAI--INN 698

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V T    I+ + K  AGE V Y  +  +  DS+IA   IGYADG    L   +       
Sbjct: 699 VSTLRTTILQLHKVKAGETVGYSRRGTIEHDSVIAAIPIGYADGLNRRLGNRN------- 751

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              G   +       +G I MD+ M D+T  +    GD ++IFG ++ +  ++ A  T  
Sbjct: 752 ---GHCLVNNQRAEYVGNICMDVAMIDVT-GIDCNEGDSVEIFGDNLPVTVLSDALQTIP 807

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  I  R  + Y
Sbjct: 808 YEVLTGISNRVNRVY 822


>gi|163754461|ref|ZP_02161583.1| alanine racemase [Kordia algicida OT-1]
 gi|161325402|gb|EDP96729.1| alanine racemase [Kordia algicida OT-1]
          Length = 369

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 167/380 (43%), Gaps = 40/380 (10%)

Query: 9   LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVE 66
           L+I+  AL+ N+  + + +  + +  AVVK   YG    ++A  L +    D+F V  + 
Sbjct: 9   LEINFKALQQNFEFLKSKTKADTKFLAVVKAFGYGSDAIEVAKFLQDELNVDYFAVAYIR 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSH 122
           EG  LR       I VL   HP     K     NL P + +      ++K  +      +
Sbjct: 69  EGAYLRAAGITTPILVL---HPQIVNLKHAIAYNLEPSLYNDRIFNAFAKEAAKQGKKDY 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSS-HVNS 176
           P  L+ +TG NRLG       D+      KKL  LS I      SHLA ++D +      
Sbjct: 126 PVHLKFNTGLNRLGF-FHTDTDYIF----KKLKTLSQIKAVSLFSHLAASEDKNEIDFTK 180

Query: 177 VQLERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKS 229
            Q+  F  ++++      YK I   + ++SGIL  P  HF + R GI LYG G D     
Sbjct: 181 NQIRLFNDVVANFEQTFNYKPI-LHMTNTSGILNYPEAHFDMVRTGIGLYGFGNDPKYDK 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           H +Q V + ++ I  I +   GE V Y         + IA   IG+AD       G+  +
Sbjct: 240 H-LQPVASLKSVISQIHRIEKGESVGYNRAFVANDYTTIATIPIGHAD-------GISRQ 291

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
               V   G   I G   PI+G + MDM M +IT  +    GD + IFG     +++A  
Sbjct: 292 FGNGV---GSVVINGKKAPIIGNVCMDMLMVNIT-GIRCNEGDEVIIFGEGQTAEELASK 347

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++L  +  R  + +
Sbjct: 348 INTISYEILTAVSQRIKRVF 367


>gi|315641800|ref|ZP_07896804.1| alanine racemase [Enterococcus italicus DSM 15952]
 gi|315482475|gb|EFU73014.1| alanine racemase [Enterococcus italicus DSM 15952]
          Length = 370

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 156/374 (41%), Gaps = 26/374 (6%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+ I   A++ N  ++   LS +    AV+K N YG G  ++A      GV  F V +++
Sbjct: 10  RITIHTEAIRENLRTVQEHLSADQSLFAVIKANGYGHGAVQVAKIAEEEGVAGFCVATID 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG++LR       +F+L  +      I+    L IPV S+          +      P A
Sbjct: 70  EGIELREAGITLPVFILGLVDCAYLPIVSQYQLAIPVASTDWLKQAEQAYLKNPWDEPIA 129

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERF 182
             L ++TG  R+G      +     S  +  G  L  + +H A AD   +     Q  RF
Sbjct: 130 VHLAIETGMGRIGFIDSGEVKQAEVSLAQAEGFYLEGVFTHFATADQADATYWQEQKARF 189

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAE 239
              I+  +       ++S   L       L R G+++YG    +D +  S+ +   ++  
Sbjct: 190 FETIAVLEAPRYIHVTNSATQLWHEPLGNLVRYGVAMYGLNPSSDALQPSYSLVPALSLT 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++++ +++  +   V YG   + T+D  I    IGYADGY   L G              
Sbjct: 250 SQLVQVKQLPSESGVGYGHTYETTQDEWIGTVPIGYADGYVRKLQGFHV----------- 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G    I+G++ MD  M  +     I VG  + + G D    I L D+A   GT +Y
Sbjct: 299 -LVNGQFCEIVGRVCMDQLMIRL--PADIPVGTTVTLIGTDGDKTISLQDIASYIGTIHY 355

Query: 356 DLLVRIGTRYAKFY 369
           ++   +  R  + Y
Sbjct: 356 EVACLLSERLPREY 369


>gi|305680044|ref|ZP_07402854.1| alanine racemase [Corynebacterium matruchotii ATCC 14266]
 gi|305660664|gb|EFM50161.1| alanine racemase [Corynebacterium matruchotii ATCC 14266]
          Length = 378

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 159/352 (45%), Gaps = 34/352 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L   IDL A+  N   +  L   A+   VVK + Y  G   +A  +   G     V ++
Sbjct: 6   LLETVIDLDAIATNTRILKNLVQPAQLMCVVKADGYNHGAIPVARTVLANGADQLGVATL 65

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHP 123
            E ++LR     A I   +   P Q+     D N+ + V+S    +     ++      P
Sbjct: 66  AEALELREAGITAPILC-WIWSPEQDFAAALDANIHLAVVS----MAHAQAIVKYAAGKP 120

Query: 124 YAL-----QVDTGFNRLGL--SLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHV 174
             L     ++DTG +R G+  S  EA+           G + +  ++SHLACAD+P +  
Sbjct: 121 EKLVQTTIKIDTGLHRSGVDESQWEAVFTLLKDAGTATGNIEVTGVMSHLACADEPGNPA 180

Query: 175 NSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKIN-K 228
           N  Q   F   I+  +  G+E     L++S  +L  P+++ ++ RPG+++YG +   +  
Sbjct: 181 NDTQAAAFNRAIALGRKLGLELPVNHLSNSPAVLTRPDFYHEMVRPGLAVYGYSPLADGN 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
            + +Q  ++   ++ +++    GE  SY    +  +   +AV   GYADG P       +
Sbjct: 241 DYGLQPAMSWVGKVTVVKPIEPGEGTSYNLTWRAAKPGYLAVIPAGYADGLPRR-----A 295

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP 339
           ++   V +GG  +      P +G+I MD  + D+ D+  ++  GD   IFGP
Sbjct: 296 QNHVEVTIGGHRY------PQVGRICMDQFVIDLGDNPHNVRPGDEAIIFGP 341


>gi|296110973|ref|YP_003621354.1| alanine racemase [Leuconostoc kimchii IMSNU 11154]
 gi|295832504|gb|ADG40385.1| alanine racemase [Leuconostoc kimchii IMSNU 11154]
          Length = 370

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 164/374 (43%), Gaps = 37/374 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++I   ALK+N   +   SG  +    VK NAYGLG    + A    GV    V  ++E
Sbjct: 10  QIEISKQALKHNTEVVKKTSGADKIFLAVKSNAYGLGLIPTSKAAVAGGVYGLAVAIIDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + LR     A I +L GI P +  +++   +++  + S+  L   ++ +S       +L
Sbjct: 70  ALALRHERVTAPILIL-GISPAKYAELMAVQHILTTVVSLSWLKEAAQYLSGEQRLHVSL 128

Query: 127 QVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            VDTG  R+G     SL EA+ +     NK+L     + +H A +D  ++    +QL+R+
Sbjct: 129 GVDTGMGRIGFRDRESLAEAIAYLQE--NKQLFDYVGLATHFAESDSSNNDYFYMQLKRW 186

Query: 183 RTLISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYG---GTDKINKSHPMQT 234
             +       E    ++SG  +   YH      ++ R G  LYG      ++     +Q 
Sbjct: 187 HDMTDGLPEPEFYHVANSGAAM---YHADEVPHEVVRVGTVLYGVEPSRGELADGKNLQP 243

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   + +  ++   AGE +SY  +   T D  I    IGY DG+   ++G         
Sbjct: 244 VMALRSEMNFVKLLPAGEGISYSHKYTTTGDEWIGTVPIGYGDGWLRKMTGF-------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL----DDVALAS 350
               K  + G+  PI+G++ MD  M  +       VG  +   G D  L    +DVA  +
Sbjct: 296 ----KVIVDGHYAPIVGQVAMDQLMIRLPRQYP--VGTKVTFIGKDGGLENTIEDVAQHA 349

Query: 351 GTTNYDLLVRIGTR 364
           G   ++++  +  R
Sbjct: 350 GLAPWEIMTGMQDR 363


>gi|49479127|ref|YP_034579.1| alanine racemase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118476000|ref|YP_893151.1| alanine racemase [Bacillus thuringiensis str. Al Hakam]
 gi|196036026|ref|ZP_03103427.1| alanine racemase [Bacillus cereus W]
 gi|196041155|ref|ZP_03108451.1| alanine racemase [Bacillus cereus NVH0597-99]
 gi|196046235|ref|ZP_03113462.1| alanine racemase [Bacillus cereus 03BB108]
 gi|218901445|ref|YP_002449279.1| alanine racemase [Bacillus cereus AH820]
 gi|225862294|ref|YP_002747672.1| alanine racemase [Bacillus cereus 03BB102]
 gi|228912983|ref|ZP_04076626.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228925498|ref|ZP_04088591.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228931744|ref|ZP_04094645.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228944050|ref|ZP_04106433.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229119908|ref|ZP_04249166.1| Alanine racemase [Bacillus cereus 95/8201]
 gi|229182639|ref|ZP_04309884.1| Alanine racemase [Bacillus cereus BGSC 6E1]
 gi|49330683|gb|AAT61329.1| alanine racemase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118415225|gb|ABK83644.1| alanine racemase [Bacillus thuringiensis str. Al Hakam]
 gi|195991395|gb|EDX55362.1| alanine racemase [Bacillus cereus W]
 gi|196022980|gb|EDX61660.1| alanine racemase [Bacillus cereus 03BB108]
 gi|196028090|gb|EDX66701.1| alanine racemase [Bacillus cereus NVH0597-99]
 gi|218535948|gb|ACK88346.1| alanine racemase [Bacillus cereus AH820]
 gi|225790248|gb|ACO30465.1| alanine racemase [Bacillus cereus 03BB102]
 gi|228600834|gb|EEK58409.1| Alanine racemase [Bacillus cereus BGSC 6E1]
 gi|228663546|gb|EEL19128.1| Alanine racemase [Bacillus cereus 95/8201]
 gi|228815624|gb|EEM61862.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228827924|gb|EEM73657.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228834160|gb|EEM79704.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228846658|gb|EEM91667.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 389

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 161/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|309775769|ref|ZP_07670764.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916446|gb|EFP62191.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 379

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 156/343 (45%), Gaps = 38/343 (11%)

Query: 17  KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT-SVEEGVKLRLYT 75
           +N  H    LS   +  AVVK NAYG G E    A+ +  + D++ T +++E +++R  +
Sbjct: 18  ENVIHLKQNLSPKTKFMAVVKGNAYGHGIEPCVHAIDD--LCDWYATATMQEAIRVRAVS 75

Query: 76  PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH----PYALQVDTG 131
            +  I V +G    +E  I       +  S     F   + +  V         L++DTG
Sbjct: 76  REKPILV-FGYVTDEE--IKQAAAYAITLSAVSTAFLQHISAVCVQQRLQVAVHLKLDTG 132

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSL-------IISHLACA---DDPSSHVNSVQLER 181
           F+RLG+S  E    +     + L   +L       I +HL  A    +       +Q  R
Sbjct: 133 FHRLGISCCEN---SSECMEELLPLYALPNIHITGIYTHLVFAGSIQEQEQAFTQLQYRR 189

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPMQTV 235
           F+  I+  +  GI+     + +S   +  P  H  + R G  ++G  + +  +  P++  
Sbjct: 190 FKNCIAALRKLGIDPGICHICNSKAAVHHPQLHMDMVRVGAYMFGLASAQEQELIPLKEA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +AR++L+R+  AGE V YG      + + IAV A G+ADGY   ++      SP  +
Sbjct: 250 LLWKARVVLLREIKAGEGVGYGHDFIAEKPTRIAVLAAGFADGYRRCIA-----QSPQSY 304

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           +     + G   P++GK+ MDM M D+T    +  G+Y  + G
Sbjct: 305 V----LLHGKRAPLVGKVCMDMFMVDVTAIQGLHTGEYAVLCG 343


>gi|256824606|ref|YP_003148566.1| alanine racemase [Kytococcus sedentarius DSM 20547]
 gi|256687999|gb|ACV05801.1| alanine racemase [Kytococcus sedentarius DSM 20547]
          Length = 391

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 162/393 (41%), Gaps = 52/393 (13%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +D TA+++N       +G A    VVK   YG G    A A    G     V    E
Sbjct: 12  RAIVDATAIRDNLRRCVQWAGGADVMGVVKAGGYGHGALAAARAALAGGATLIGVAQPTE 71

Query: 68  GVKLR-----------LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            V LR           L TPQA +          E +  D  L     S P      +  
Sbjct: 72  AVALRRAGIASEVLAWLLTPQADL---------DEAVAHDITL---GVSAPWALDAVRDA 119

Query: 117 SCGVSHPYA--LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSL--IISHLACADDPS 171
           +     P    L++DTG +R GL+  +  D F      ++ G L++  + SHLACADDP 
Sbjct: 120 ARRAGRPVRVHLELDTGMSRGGLAPSDWPDLFARARQAEREGSLTVQGVFSHLACADDPG 179

Query: 172 SHVNSVQLERF-RTLISHYK-GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTD-- 224
                 Q + F R L +  + G++     LA+S+  L  P+  + L RPG+  YG +   
Sbjct: 180 HPATDHQRDAFERGLAAAVRAGLDPRWRHLANSAATLTRPDLAYDLVRPGLVSYGLSPIP 239

Query: 225 --KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             + ++   ++  +T  AR+  +R+  AG  VSY        +  + V  +GY DG P  
Sbjct: 240 DLRTSQDLGVRPAMTLVARLSAVRRVPAGTGVSYSHTHVTPTERWLGVVPLGYGDGVPRG 299

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFG 338
           LSG           G  G +     P  G++ MD  + D+     D    E GD + +FG
Sbjct: 300 LSGRGRVR----VTGSGGAVD---APFAGRVCMDQFVVDLGPVEGDRPPAEAGDEVVLFG 352

Query: 339 PDIK----LDDVALASGTTNYDLLVRIGTRYAK 367
                     D A A  T +Y+++ R+G R  +
Sbjct: 353 DGADGGPTAQDWATAMDTISYEIVTRVGPRVPR 385


>gi|217957812|ref|YP_002336356.1| alanine racemase [Bacillus cereus AH187]
 gi|222094012|ref|YP_002528063.1| alanine racemase [Bacillus cereus Q1]
 gi|229137081|ref|ZP_04265705.1| Alanine racemase [Bacillus cereus BDRD-ST26]
 gi|217063401|gb|ACJ77651.1| alanine racemase [Bacillus cereus AH187]
 gi|221238061|gb|ACM10771.1| alanine racemase [Bacillus cereus Q1]
 gi|228646388|gb|EEL02598.1| Alanine racemase [Bacillus cereus BDRD-ST26]
          Length = 389

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 161/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGKRVPIVGRVTMDQFMIHL--PCKVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|313638720|gb|EFS03820.1| alanine racemase [Listeria seeligeri FSL S4-171]
          Length = 368

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 157/380 (41%), Gaps = 43/380 (11%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +    L  N    +VVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11  IEIDRCAIRENIKNEQKKLPKNVAVWSVVKANAYGHGIIEVAKTAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR    Q    ++ G    ++  +   N I        LT + +    GV     L+
Sbjct: 71  ALALREAGFQDDFILVLGATRKEDANLAAHNNI-------SLTIFREDWLDGVHLETPLK 123

Query: 128 V----DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           V    D+G  RLG+ S +EA           +  L    +H A AD   +     QL +F
Sbjct: 124 VHLKIDSGMGRLGIRSAEEAEQIEAKIVQTDMFFLEGAYTHFATADQLETSYFEQQLAKF 183

Query: 183 RTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQ 233
             ++   KG+++       A+S+  LL     F   R GIS+YG T  I    N    ++
Sbjct: 184 DAIL---KGLKSRPRFVHAANSAAALLQSQIGFDAVRFGISMYGLTPSIEIKSNLPFKLK 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +     ++ ++K   G+ VSYG     T    IA   IGYADG     SG        
Sbjct: 241 PALALYTEMVHVKKLAPGDSVSYGATYTATEREWIATLPIGYADGLIRHYSGF------- 293

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  + G   PI+G++ MD T+  +      + G  + I G D    +  DD A  
Sbjct: 294 -----QVLVDGKKAPIIGRVCMDQTIIKL--PYEFQTGTKVTIIGTDHGNSVTADDAAKY 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++   +  R  + Y
Sbjct: 347 LDTINYEVTCLLTERIPRKY 366


>gi|199598806|ref|ZP_03212218.1| Alanine racemase [Lactobacillus rhamnosus HN001]
 gi|258509531|ref|YP_003172282.1| alanine racemase [Lactobacillus rhamnosus GG]
 gi|199590311|gb|EDY98405.1| Alanine racemase [Lactobacillus rhamnosus HN001]
 gi|257149458|emb|CAR88431.1| Alanine racemase [Lactobacillus rhamnosus GG]
 gi|259650798|dbj|BAI42960.1| alanine racemase [Lactobacillus rhamnosus GG]
          Length = 379

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 164/376 (43%), Gaps = 36/376 (9%)

Query: 11  IDLTA-LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID TA L N  H +  L    +  AVVK +AYG G  ++A     AG   F V  ++E +
Sbjct: 13  IDETAILHNVQHEVARLKKQTQLFAVVKADAYGHGMLRVAHVAKAAGASGFCVALLDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHP---YA 125
            LR       + VL GI P Q   I     + + +SSV  L     ++      P     
Sbjct: 73  DLRAANYTEPVLVL-GIVPSQYAAIAAAQTVSLPLSSVDWLKQALPVLEAQPELPPLRLH 131

Query: 126 LQVDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           + +DTG  R+G +    L +A+ F     + K   +  I +H A ADDP       Q+ +
Sbjct: 132 IALDTGMGRIGFTDDQTLLDAVAFIQA--HPKAFTIEGIFTHFATADDPDDAYFKQQVAK 189

Query: 182 FRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
           F  +++   ++     +++S+  L     +  + R G+++YG    G        P++  
Sbjct: 190 FNHMVALLPHRPRYVHVSNSATSLWHAACNGNMVRYGVAIYGLNPSGDVIPTTPFPLEPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ E+ +   ++  AG+ +SYG   + T D  I    +GYADG+   L G          
Sbjct: 250 LSLESELTFCKQVHAGDGISYGVTYRATGDEFIGTVPVGYADGWLRRLQGFHV------- 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
                 + G++  I+G+I MD  M  +  +     G  + + G     +I L DVA  S 
Sbjct: 303 -----LVDGHLCEIVGRICMDQFMIRLPKAYP--AGTKVVLIGQSGDQEITLLDVAKYSH 355

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y++   + +R  +
Sbjct: 356 TIHYEIACNLTSRLKR 371


>gi|221069574|ref|ZP_03545679.1| alanine racemase [Comamonas testosteroni KF-1]
 gi|220714597|gb|EED69965.1| alanine racemase [Comamonas testosteroni KF-1]
          Length = 368

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 167/380 (43%), Gaps = 46/380 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I   A+++N   +     +A+  +V+K NAYG G E +   L       F +  ++E 
Sbjct: 7   VTIHPEAVRHNLERVRQAVPDAKLWSVIKANAYGHGIENVFEGLR--ATDGFAMLDLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            ++R    +  I +L G+   ++ +I     +   +    Q+ + +   +  V H   L+
Sbjct: 65  QRVRQLGWRGPILLLEGVFELRDLEICSRLGIWHAVHCDEQIDWLAAHKT-QVGHRVFLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVNSVQL 179
           +++G NRLG        FT   F     +L+ +        ++H + AD   +H    QL
Sbjct: 124 MNSGMNRLG--------FTPERFRAAYARLNALPQVDEISFMTHFSDAD--VAHGIDHQL 173

Query: 180 ERFRTLISHYKGIEASLASSSGILL---GPNYHFQLTRPGISLYGGTDKI---NKSH-PM 232
           + F        G E S+++S+  LL     N      RPGI LYG +      + +H  +
Sbjct: 174 KVFHETTLDLPG-ERSISNSAATLLYGDESNVRCDWVRPGIVLYGSSPDFPAHDAAHWGL 232

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T  +RII I++   G+ V YG + +      + V A GYADGYP            
Sbjct: 233 EPTMTLSSRIIGIQELQPGDTVGYGSRFQCDAPLRLGVVACGYADGYPRVCP-------- 284

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVA 347
               G    ++G     LG+++MDM   D++      +G  + ++G       + +D+VA
Sbjct: 285 ---TGTPVLVEGVRTRTLGRVSMDMMAVDLSPVPKARLGSEVTLWGRASNGAVLPIDEVA 341

Query: 348 LASGTTNYDLLVRIGTRYAK 367
            A+GT  Y+L+  +  R  K
Sbjct: 342 AAAGTLGYELMCAVAPRVPK 361


>gi|299822355|ref|ZP_07054241.1| alanine racemase [Listeria grayi DSM 20601]
 gi|299815884|gb|EFI83122.1| alanine racemase [Listeria grayi DSM 20601]
          Length = 368

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 167/386 (43%), Gaps = 54/386 (13%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  A++ N  +  A L       AVVK NAYG G  ++A    +AG   F V  ++E
Sbjct: 11  IEVNGDAIRANITNEKAHLPAETAVWAVVKANAYGHGIIEVAKIAKSAGADGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQ------EKII----FDTNLI---PVISSVPQLTFYSK 114
            + LR     + + ++ G  P +      EK I    FD N +   PV+++  +L+ + K
Sbjct: 71  ALALREAGFTSELILVLGAVPAEYANLAAEKQISLTLFDENWLTELPVLTA--KLSLHVK 128

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSH 173
           L             DTG  RLG    EAL        ++ L +   I +H A AD   + 
Sbjct: 129 L-------------DTGMGRLGFRNGEALKRVSTKLAEQPLLEWEGIYTHFATADQKDTT 175

Query: 174 VNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKS 229
               QL +F  L S  K       +A+SS  LL     F   R GI++YG T  D+I   
Sbjct: 176 YYEEQLAKFEGLFSEIKPRPRFVHVANSSAALLHDQTGFNAVRFGIAMYGLTPSDEIADI 235

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P  +Q  ++   +I+ +++  AG+ VSYG   +  ++  +A   IGYADG+    +G  
Sbjct: 236 LPFELQPALSLYTKIVQVKQLQAGDCVSYGATYQAAQEEWVATLPIGYADGWIRKYTGFS 295

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKL 343
                         ++G    I+G++ MD  +  +       VG  + + G      I  
Sbjct: 296 L------------LVEGEYAEIVGRVCMDQLIIRLPRYYP--VGTKVTLIGKSGEKQITA 341

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           ++ A    T +Y++   +  R  + Y
Sbjct: 342 EEAARKIETIDYEVTCLLSERIPRIY 367


>gi|229194629|ref|ZP_04321426.1| Alanine racemase [Bacillus cereus m1293]
 gi|228588850|gb|EEK46871.1| Alanine racemase [Bacillus cereus m1293]
          Length = 389

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 161/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKEVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGKRVPIVGRVTMDQFMIHL--PCKVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|203284081|ref|YP_002221821.1| alanine racemase [Borrelia duttonii Ly]
 gi|201083524|gb|ACH93115.1| alanine racemase [Borrelia duttonii Ly]
          Length = 370

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 169/375 (45%), Gaps = 34/375 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+   L++N  ++ +        A +K +AYG G  +         +  F + S+ + +K
Sbjct: 12  INFKNLEHNLITIKSHVHKKELVATLKADAYGHGLIQTFKFFKEKNINYFGLFSIYDALK 71

Query: 71  LRLYTPQARIFVLY--GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYA 125
           LR    ++ I +LY   I+    K + +  + P ++    L+   +   C   +      
Sbjct: 72  LRKIDKKSNI-LLYINNINKNAIKNLVNFEITPFVADSQYLSLIEE--ECKRQNKKIKVH 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L+VD G NR G+  + AL+      + KL +   I +HL   ++  + +   Q ++F  L
Sbjct: 129 LKVDVGMNRYGIKTENALNLATKIQDSKLVEFEGICTHLPTTEN--TKITQTQSKKFDYL 186

Query: 186 ISHYKGIEASLA----SSSGILLGPNY----HFQLTRPGISLYG---GTDKINKSHPMQT 234
           I+  K    +      S+SG +   NY     F + RPG+ LYG     +  N +  ++ 
Sbjct: 187 INELKNKNINPKFIHISNSGHI--TNYKISEKFNMIRPGLILYGYHPNPNNQNNNLKLKP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   +++I I+    G+ +SY G  K   D  I +  +GY DG P       S++   +
Sbjct: 245 VLNLYSKVIFIKNIKKGDQISYSGLFKAKEDMQIGLIPVGYFDGIPQN----TSKNFYCI 300

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
               K FI+       GKI M++++ +I   L I +GD ++I    + LD ++  SG + 
Sbjct: 301 IKNKKCFIR-------GKICMNISIIEIPQDLKINIGDKVEIVSERLSLDILSKESGRST 353

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LL  IG    K Y
Sbjct: 354 YELLCSIGKNEKKKY 368


>gi|332875573|ref|ZP_08443386.1| alanine racemase [Acinetobacter baumannii 6014059]
 gi|193076000|gb|ABO10585.2| alanine racemase 2 PLP-binding, catabolic [Acinetobacter baumannii
           ATCC 17978]
 gi|332736276|gb|EGJ67290.1| alanine racemase [Acinetobacter baumannii 6014059]
          Length = 367

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 169/382 (44%), Gaps = 58/382 (15%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  ++E  +
Sbjct: 9   IHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDLDEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +R       I +L GI   Q+  +FD     L   I S  Q+ +  +       HPY  Q
Sbjct: 67  IRALGWTGPILLLEGIFSPQD--LFDCVQYQLSFTIHSEAQIEWVEQ-------HPYPAQ 117

Query: 128 VD------TGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV- 177
            D      +G NRLG   Q   +A +  +N  N  + +++ ++ H + AD        + 
Sbjct: 118 FDVFLKMNSGMNRLGFKPQHYVQAWERLNNLAN--VAKITHMM-HFSDADGDRFGQQGID 174

Query: 178 -QLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP- 231
            Q+  F  ++    G E S+++S+ IL    Y  QL     R GI LYG +     +H  
Sbjct: 175 YQITAFEEIVKDLPG-ERSVSNSAAIL---RYQDQLKSDYVRSGIMLYGSSPDY-PTHSI 229

Query: 232 ----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  ++  + II ++     E V YG      +   I + A GYADGY        
Sbjct: 230 ADWGLQPTMSLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGY-------- 281

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IK 342
              SP+   G    +       +G+++MDM   D+T   S +VG  + ++G       + 
Sbjct: 282 QRISPT---GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLP 338

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           +DDVA++SGT  Y+L+  +  R
Sbjct: 339 IDDVAVSSGTVGYELMCAVTAR 360


>gi|308063768|gb|ADO05655.1| alanine racemase [Helicobacter pylori Sat464]
          Length = 377

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 178/382 (46%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++L  +  +  I +L G  P     ++ D +L  +I S+ Q   +S++ +         
Sbjct: 68  ALELCSHFSKTPILIL-GYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHYKGIEASLA-----SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +      +         +S+GIL       N    L RPGI LYG   ++ + ++ P  
Sbjct: 187 FLEQLSNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    +  L +   
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGL---MRALGNRIQ 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
            +        I   + P++GK+ MD     + +++  + GD + +FG    K +D   +A
Sbjct: 304 VA--------INNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIPYETISTLSKRLERVY 376


>gi|258651430|ref|YP_003200586.1| alanine racemase [Nakamurella multipartita DSM 44233]
 gi|258554655|gb|ACV77597.1| alanine racemase [Nakamurella multipartita DSM 44233]
          Length = 394

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 169/389 (43%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTA----AVVKDNAYGLGCEKIAPALYNAGV 57
            + E +   +DL A+  N  ++ AL   +  A    AVVK + YG G    A A    G 
Sbjct: 19  RAGERVAAVVDLAAITANVRTLLALMRGSNPAGSVMAVVKADGYGHGAVAAAQAALAGGA 78

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116
               V +  E ++LR       + VL  + P  E++       P +++  QL   S+   
Sbjct: 79  TWLGVATPTEALQLRAA--GVDVPVLAWLWPPGERVA------PALAAGVQLAVASRAQL 130

Query: 117 ------SCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACA 167
                 + G      ++VDTG  R G+   E    LD    +      +++ ++SHLA A
Sbjct: 131 DRVLDQAVGAVPDIHVKVDTGLGRGGVGPAEIGAVLDAVAAAQRAGRVRVAGLMSHLASA 190

Query: 168 DDPSSHVNSVQLERFRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYGG 222
           D P       Q   F  +++    +GI+  L   A+++G++  P   F L R GI  YG 
Sbjct: 191 DVPDDPSVPEQTATFHRILAAAADRGIDPPLRHLANTAGLIDHPATRFDLVRVGIGGYG- 249

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            + +    P+   +T  A + L ++  AG  VSYG   +  R++ +A+  +GYADG P  
Sbjct: 250 LNPVATPVPLTPAMTLRATVALTKRVPAGHGVSYGLTYRTDRETTLALIPLGYADGLPRA 309

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--- 339
            S             G+ ++ G    I G++ MD  + D  D   +  GD   +FGP   
Sbjct: 310 ASNR-----------GEIWLAGARRRIAGRVAMDQVVVDCGDD-PVAAGDPAIVFGPGEQ 357

Query: 340 -DIKLDDVALASGTTNYDLLVRIGTRYAK 367
            +    D A   GT +Y+++ RIG R  +
Sbjct: 358 GEPTARDWADYCGTIDYEIVTRIGPRVPR 386


>gi|307709632|ref|ZP_07646084.1| alanine racemase [Streptococcus mitis SK564]
 gi|307619530|gb|EFN98654.1| alanine racemase [Streptococcus mitis SK564]
          Length = 367

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 170/376 (45%), Gaps = 39/376 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVATAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA 125
           +LR      +I +L G+   +   +   +D  L +  +  +  L      +S    H   
Sbjct: 72  ELRQAGLSKKILIL-GVSDIEAVALAKEYDITLTVAGLEWIQALLVKEADLSGLRVH--- 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++D+G  R+G       +   +   +    +  I +H A AD+ S    ++QLERF+T+
Sbjct: 128 LKIDSGMGRIGFREAGEANKAQDLLQQHGAHVEGIFTHFATADEESDDYFNIQLERFKTI 187

Query: 186 ISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVVT 237
           ++  K + E   AS+S   L   +H    F   R G ++YG     + ++  + ++  +T
Sbjct: 188 LASMKEVPEMVHASNSATTL---WHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV + 
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVLVD 298

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
           G+        PI+G+++MD     +     +  G  + + G     +I    VA   GT 
Sbjct: 299 GQA------CPIVGRVSMDQITIRLPKLYPL--GTKVTLIGTNGDKEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|229551601|ref|ZP_04440326.1| alanine racemase [Lactobacillus rhamnosus LMS2-1]
 gi|258540732|ref|YP_003175231.1| alanine racemase [Lactobacillus rhamnosus Lc 705]
 gi|229315066|gb|EEN81039.1| alanine racemase [Lactobacillus rhamnosus LMS2-1]
 gi|257152408|emb|CAR91380.1| Alanine racemase [Lactobacillus rhamnosus Lc 705]
          Length = 379

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 164/376 (43%), Gaps = 36/376 (9%)

Query: 11  IDLTA-LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID TA L N  H +  L    +  AVVK +AYG G  ++A     AG   F V  ++E +
Sbjct: 13  IDETAILHNVQHEVARLKKQTQLFAVVKADAYGHGMLRVAHVAKAAGASGFCVALLDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHP---YA 125
            LR       + VL GI P Q   I    ++ + +SSV  L     ++      P     
Sbjct: 73  DLRAANYTEPVLVL-GIVPSQYAAIAAAQMVSLPLSSVDWLKQALPVLEAQPELPPLRLH 131

Query: 126 LQVDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           + +DTG  R+G +    L +A+ F     + K   +  I +H A ADDP       Q+ +
Sbjct: 132 IALDTGMGRIGFTDDQTLLDAVAFIQA--HPKAFTIEGIFTHFATADDPDDAYFKQQVAK 189

Query: 182 FRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
           F  +++   ++     +++S+  L     +  + R G+++YG    G        P++  
Sbjct: 190 FNHMVALLPHRPRYVHVSNSATSLWHAACNGNMVRYGVAIYGLNPSGDVIPTTPFPLEPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ E+ +   ++  AG+ +SYG   + T D  I    +GYADG+   L G          
Sbjct: 250 LSLESELTFCKQVHAGDGISYGVTYRATGDEFIGTVPVGYADGWLRRLQGFHV------- 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
                 + G+   I+G+I MD  M  +  +     G  + + G     +I L DVA  S 
Sbjct: 303 -----LVDGHPCEIVGRICMDQFMIRLPKAYP--AGTKVVLIGQSGDQEITLLDVAKYSH 355

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y++   + +R  +
Sbjct: 356 TIHYEIACNLTSRLKR 371


>gi|203287620|ref|YP_002222635.1| alanine racemase [Borrelia recurrentis A1]
 gi|201084840|gb|ACH94414.1| alanine racemase [Borrelia recurrentis A1]
          Length = 370

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 170/375 (45%), Gaps = 34/375 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+   L++N  ++ +        A +K +AYG G  +         +  F + S+ + +K
Sbjct: 12  INFKNLEHNLITIKSHVHKKELVATLKADAYGHGLIQTFKFFKEKNINYFGLFSIYDALK 71

Query: 71  LRLYTPQARIFVLY--GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYA 125
           LR    ++ I +LY   I+    K + +  + P ++    L+   +   C   +      
Sbjct: 72  LRKIDKKSNI-LLYINNINKNAIKNLVNFEITPFVADSQYLSLIEE--ECKRQNKKIKVH 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L+VD G NR G+  + AL+      + KL +   I +HL   ++  + +   Q ++F  L
Sbjct: 129 LKVDVGMNRYGIKTENALNLATKIQDSKLVEFEGICTHLPTTEN--TKITQTQSKKFDYL 186

Query: 186 ISHYKGIEASLA----SSSGILLGPNY----HFQLTRPGISLYG---GTDKINKSHPMQT 234
           I+  K    +      S+SG +   NY    +F + RPG+ LYG     +  N +  ++ 
Sbjct: 187 INELKNKNINPKFIHISNSGHI--TNYKISENFNMIRPGLILYGYHPNPNNQNNNLKLKP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   +++I ++    G+ +SY G  K   D  I +  +GY DG P       S++   +
Sbjct: 245 VLNLYSKVIFVKNIKKGDQISYSGLFKAKEDMQIGLIPVGYFDGIPQN----TSKNFYCI 300

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
               K FI+       GKI M++++ +I   L I +GD ++I    + LD ++  SG + 
Sbjct: 301 IKDKKCFIR-------GKICMNISIIEIPQDLKINIGDKVEIVSERLSLDILSKESGRST 353

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LL  IG    K Y
Sbjct: 354 YELLCSIGKNEKKKY 368


>gi|206972274|ref|ZP_03233221.1| alanine racemase [Bacillus cereus AH1134]
 gi|229067995|ref|ZP_04201308.1| Alanine racemase [Bacillus cereus F65185]
 gi|229077594|ref|ZP_04210234.1| Alanine racemase [Bacillus cereus Rock4-2]
 gi|229176832|ref|ZP_04304233.1| Alanine racemase [Bacillus cereus 172560W]
 gi|206732848|gb|EDZ50023.1| alanine racemase [Bacillus cereus AH1134]
 gi|228606640|gb|EEK64060.1| Alanine racemase [Bacillus cereus 172560W]
 gi|228705713|gb|EEL58059.1| Alanine racemase [Bacillus cereus Rock4-2]
 gi|228715133|gb|EEL66996.1| Alanine racemase [Bacillus cereus F65185]
          Length = 389

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|228950772|ref|ZP_04112901.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|89475552|gb|ABD73308.1| alanine racemase [Bacillus thuringiensis serovar kurstaki]
 gi|228808912|gb|EEM55402.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 389

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKAEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|88803788|ref|ZP_01119311.1| alanine racemase [Polaribacter irgensii 23-P]
 gi|88780316|gb|EAR11498.1| alanine racemase [Polaribacter irgensii 23-P]
          Length = 366

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 160/376 (42%), Gaps = 32/376 (8%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID  AL +N  +    L    +  AVVK   YG    ++A  L +  V  F V    E
Sbjct: 8   LEIDGKALVHNLDYFKEKLQTTTKILAVVKAFGYGSDGAQVAKFLEHK-VDYFAVAYTHE 66

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHPYA 125
           GV LR    Q  I VL+  H    ++I D  L P + +      + K+        +P  
Sbjct: 67  GVALREAGVQTPILVLHP-HLQNLEVIIDFKLEPGLYNFKIFNAFLKVAKEKGSAQYPIH 125

Query: 126 LQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLER 181
           L+ +TG NRLG S  E    L   H S   K+  L    SHLA ++D      +  Q+E+
Sbjct: 126 LKFNTGLNRLGFSATEIPTILTQLHASTAVKVQSL---FSHLAASEDLEEKAFTTGQIEQ 182

Query: 182 FRTLISH-YKGIEAS----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F  +    + G++ +    L ++SG++  P   F + R GI LYG  +   ++  ++   
Sbjct: 183 FTAIKEELFAGLKYTPMLHLLNTSGVVNYPKAQFDMVRIGIGLYGFGNDAKETVHLKNTH 242

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             ++ I  I    AGE V Y         +  A   IG+ADG    L             
Sbjct: 243 NLKSIISQIHTIAAGETVGYNRAFAAKATTKTATIPIGHADGLSRRLGNT---------- 292

Query: 297 GGKGFIK--GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             KGF++      PI+G + MDM M D+T  +    GD + +F     +  +A  SGT  
Sbjct: 293 --KGFVRINQQNAPIIGNVCMDMIMVDVT-HIDCSEGDEVIVFNTQEMIQHIATTSGTIV 349

Query: 355 YDLLVRIGTRYAKFYT 370
           Y+ L  I  R  K  T
Sbjct: 350 YETLTAISPRVHKTLT 365


>gi|188527764|ref|YP_001910451.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori Shi470]
 gi|226711048|sp|B2UU89|ALR_HELPS RecName: Full=Alanine racemase
 gi|188144004|gb|ACD48421.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori Shi470]
          Length = 377

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 175/382 (45%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
            ++L  +  +  I +L G  P     ++ D +L  +I S+ Q   +S+  +         
Sbjct: 68  ALELHSHFSKTPILIL-GYSPNSNASMLIDNDLSAMIFSLEQAEVFSQTALKSQKRLKVH 126

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F  
Sbjct: 127 LKIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNA 186

Query: 185 LISHYKGIEASLA-----SSSGILL----GPNYHFQLTRPGISLYG--GTDKINKSHP-- 231
            +      +         +S+GIL       N    L RPGI LYG   ++ + ++ P  
Sbjct: 187 FLEQLSNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTI 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L        
Sbjct: 247 LKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI---- 302

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VA 347
                  +  I   + P++GK+ MD     + +++  + GD + +FG    K +D   +A
Sbjct: 303 -------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+ +  +  R  + Y
Sbjct: 355 ALLNTIPYETISTLSKRLERVY 376


>gi|71904184|ref|YP_280987.1| alanine racemase [Streptococcus pyogenes MGAS6180]
 gi|123639333|sp|Q48RM8|ALR_STRPM RecName: Full=Alanine racemase
 gi|71803279|gb|AAX72632.1| alanine racemase [Streptococcus pyogenes MGAS6180]
          Length = 366

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 168/373 (45%), Gaps = 31/373 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S+   +    +T AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + ++     +   I+S+  +                ++V
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGLKVHVKV 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL   +A++   +S  +    +  I +H A AD+      + QL+ F+ LI+ 
Sbjct: 131 DSGMGRIGLRSSKAVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFFKKLIAG 190

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEA 240
            +     + AS +++S  +   +  F   R GI  YG    G+D ++   P+Q  ++ E+
Sbjct: 191 LEDKPRLVHASNSATS--IWHSDTIFNAVRLGIVSYGLNPSGSD-LSLPFPLQEALSLES 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ ++   AG+ V YG      +   +    IGYADG+   + G               
Sbjct: 248 SLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFSV------------ 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
            + G    I+G+++MD     +  +  +  G  + + G     +I   D+A    T NY+
Sbjct: 296 LVDGQFCEIIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTINYE 353

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 354 VLCLLSDRIPRIY 366


>gi|52144988|ref|YP_081841.1| alanine racemase [Bacillus cereus E33L]
 gi|51978457|gb|AAU20007.1| alanine racemase [Bacillus cereus E33L]
          Length = 389

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G+       A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|331084077|ref|ZP_08333184.1| alanine racemase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330402439|gb|EGG82009.1| alanine racemase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 382

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 172/391 (43%), Gaps = 39/391 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPAL----YNA 55
           M     ++  I+L A+  N  +M + +  N +  AV+K + YG G   IA  +    Y  
Sbjct: 1   MRIQSRIQAHINLDAIDYNLKNMYDYMGKNTQIIAVLKADGYGHGAVPIAKEIEAYSYIW 60

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           G+    V +VEEG +LR    +  I +L   +      I   +  P   +V +L+   +L
Sbjct: 61  GIA---VATVEEGRELRKAGIKKPILILGYTYEEDYDRIVKEDFQP---TVFKLSMAEQL 114

Query: 116 MSCGVSHPYALQV----DTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
               V     L++    DTG  R+G   +++A+            +L  I +H A AD+ 
Sbjct: 115 SKAAVKANKTLKIHIKLDTGMTRIGYRHIEDAIPEIVEISKLPNIELEGIFTHFARADET 174

Query: 171 SSHVNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GT 223
                  QLE+++  +   K  GI   +   ++S+ I+   + +F   R GI LYG   +
Sbjct: 175 DLAPAYQQLEKYQEFLDALKRQGISIPVKHCSNSAAIIRMQDAYFDAVRAGIILYGMYPS 234

Query: 224 DKINKSHPM-QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
           +++ K   + +  +  ++ I  I++   G  +SYGG     + + +A   +GYADGY   
Sbjct: 235 NEVEKDKILLKPAMELKSHIAYIKEVEPGVEISYGGTFTTEKVTRVATIPVGYADGYSRG 294

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
           LS             G   I+G    ILGK+ MD  M D+T+    E  D + + G D  
Sbjct: 295 LSN-----------KGSVLIRGKRAKILGKVCMDQFMVDVTEIPEAEELDEVTLLGKDGT 343

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             I ++++   SG  NY+    I  R  + Y
Sbjct: 344 DCITMEELGELSGRFNYEFACCISKRVPRVY 374


>gi|30260428|ref|NP_842805.1| alanine racemase [Bacillus anthracis str. Ames]
 gi|47525509|ref|YP_016858.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183271|ref|YP_026523.1| alanine racemase [Bacillus anthracis str. Sterne]
 gi|65317680|ref|ZP_00390639.1| COG0787: Alanine racemase [Bacillus anthracis str. A2012]
 gi|165871589|ref|ZP_02216235.1| alanine racemase [Bacillus anthracis str. A0488]
 gi|167634186|ref|ZP_02392508.1| alanine racemase [Bacillus anthracis str. A0442]
 gi|167640352|ref|ZP_02398617.1| alanine racemase [Bacillus anthracis str. A0193]
 gi|170687737|ref|ZP_02878952.1| alanine racemase [Bacillus anthracis str. A0465]
 gi|170707904|ref|ZP_02898354.1| alanine racemase [Bacillus anthracis str. A0389]
 gi|177653374|ref|ZP_02935584.1| alanine racemase [Bacillus anthracis str. A0174]
 gi|190567419|ref|ZP_03020333.1| alanine racemase [Bacillus anthracis Tsiankovskii-I]
 gi|227812920|ref|YP_002812929.1| alanine racemase [Bacillus anthracis str. CDC 684]
 gi|229599992|ref|YP_002864879.1| alanine racemase [Bacillus anthracis str. A0248]
 gi|254686594|ref|ZP_05150453.1| alanine racemase [Bacillus anthracis str. CNEVA-9066]
 gi|254723566|ref|ZP_05185353.1| alanine racemase [Bacillus anthracis str. A1055]
 gi|254734928|ref|ZP_05192640.1| alanine racemase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739713|ref|ZP_05197406.1| alanine racemase [Bacillus anthracis str. Kruger B]
 gi|254754916|ref|ZP_05206951.1| alanine racemase [Bacillus anthracis str. Vollum]
 gi|254756959|ref|ZP_05208987.1| alanine racemase [Bacillus anthracis str. Australia 94]
 gi|30253749|gb|AAP24291.1| alanine racemase, spore-specific [Bacillus anthracis str. Ames]
 gi|47500657|gb|AAT29333.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177198|gb|AAT52574.1| alanine racemase [Bacillus anthracis str. Sterne]
 gi|164712693|gb|EDR18224.1| alanine racemase [Bacillus anthracis str. A0488]
 gi|167511754|gb|EDR87135.1| alanine racemase [Bacillus anthracis str. A0193]
 gi|167530500|gb|EDR93215.1| alanine racemase [Bacillus anthracis str. A0442]
 gi|170127262|gb|EDS96139.1| alanine racemase [Bacillus anthracis str. A0389]
 gi|170668264|gb|EDT19012.1| alanine racemase [Bacillus anthracis str. A0465]
 gi|172081414|gb|EDT66487.1| alanine racemase [Bacillus anthracis str. A0174]
 gi|190561546|gb|EDV15517.1| alanine racemase [Bacillus anthracis Tsiankovskii-I]
 gi|227006546|gb|ACP16289.1| alanine racemase [Bacillus anthracis str. CDC 684]
 gi|229264400|gb|ACQ46037.1| alanine racemase [Bacillus anthracis str. A0248]
          Length = 389

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 161/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKIALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|42779353|ref|NP_976600.1| alanine racemase [Bacillus cereus ATCC 10987]
 gi|42735268|gb|AAS39208.1| alanine racemase [Bacillus cereus ATCC 10987]
          Length = 389

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +       AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSGVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|315649168|ref|ZP_07902258.1| alanine racemase [Paenibacillus vortex V453]
 gi|315275387|gb|EFU38745.1| alanine racemase [Paenibacillus vortex V453]
          Length = 395

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 176/388 (45%), Gaps = 48/388 (12%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  L+ N++    AL  +    A VK NAYG G  ++A  L   G     V  ++E 
Sbjct: 11  EINLDHLRANYNVFREALPKHMELLACVKANAYGHGAVEVARELQQLGAAYLSVAFLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA-- 125
           ++LR       I VL    P   +  ++ ++ I + SS  ++    K +      P    
Sbjct: 71  LELRQGGISIPILVLGYTPPEAVETAYEYDVTITLFSS--EVLKAIKALPVKPEKPLKVH 128

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++D+G  RLGL   ++AL F   + +     +  + +H A AD+   H     LE++R 
Sbjct: 129 IKIDSGMGRLGLLPGEDALTFIEEACSLPQVVVEGMFTHFARADE---HNKDYTLEQYR- 184

Query: 185 LISHYKGIEASL------------ASSSGILLGPNYHFQLTRPGISLYG--GTDKIN-KS 229
               ++G+  +L             +S+  +  P   + + R GISLYG   +D++N K+
Sbjct: 185 ---RFQGVADALRDKGYHIPIIHTGNSAAAIDTPELSYNMVRIGISLYGLYPSDEVNRKA 241

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T + +++ ++       +SYG +    ++  I    IGYADG+   LSG    
Sbjct: 242 VSLRPVMTLKTKLVYVKNLPPHSGISYGSKYVTEQEERIGTLPIGYADGFSRMLSG---- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD----I 341
                    +  I+G   P++G I MD  M  +     ++  I+ G+ + + G      I
Sbjct: 298 -------KAEVLIRGRRAPVVGNICMDQCMVSLKPFAEEAEQIKAGEEVVLIGQQSGECI 350

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
             D++A   GT +Y+++  I  R  + Y
Sbjct: 351 TADELAAKLGTIHYEVVCMIAHRVPRQY 378


>gi|229159406|ref|ZP_04287426.1| Alanine racemase [Bacillus cereus R309803]
 gi|228624073|gb|EEK80879.1| Alanine racemase [Bacillus cereus R309803]
          Length = 389

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNITHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRVGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   R+  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTRVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGKRVPIVGRVTMDQFMIHL--PCEVPLGTRVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|327399718|ref|YP_004340587.1| Alanine racemase [Hippea maritima DSM 10411]
 gi|327182347|gb|AEA34528.1| Alanine racemase [Hippea maritima DSM 10411]
          Length = 373

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 159/346 (45%), Gaps = 35/346 (10%)

Query: 35  VVKDNAYGLGCEKIAPAL-YNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           V+K +AYG G  +IA  L     V    +  ++EG  LR    +  I  +  +       
Sbjct: 34  VIKADAYGHGIVRIAKELSIYPNVAYLGIAHIKEGAMLRKRGVKKPILAMSCLDSFDINT 93

Query: 94  IFDTNLIPV---ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL---SLQEALDFTH 147
           + + ++ PV   I+ + +L  Y+KL +  +     L+ DTG  RLG+     Q+ ++   
Sbjct: 94  MHEFSITPVAHNITLLERLIDYAKLNNTRIK--LHLKFDTGMARLGIREEETQKTIELCK 151

Query: 148 NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEASL---ASSSGI 202
              N K  ++  ++SH + ++  +      QL RF+ +I  +   GI   L   A+S  I
Sbjct: 152 Q--NDKYIEIDGLMSHFSDSESDAQWTKK-QLNRFKNIIKMFYDSGIYPRLTHIANSGAI 208

Query: 203 LLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
           L   + H    RPG+++YG    +N  K   ++ V+  ++++I I     GE +SY    
Sbjct: 209 LSFKDTHLNCVRPGLAMYGYAPAVNLKKIIDLKPVLEIQSQLINIHVLKKGEGISYSRTF 268

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
              +D  + V A GYADG P ++S                 + G     +G + MDM M 
Sbjct: 269 VADKDMKVGVVAFGYADGLPRSISN-----------KFYCIVNGQRSKSIGTVCMDMFMC 317

Query: 321 DITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIG 362
           D+TD +  +V D + I G      I  D++A  +GT +Y++L  IG
Sbjct: 318 DLTD-IEAKVSDDVIIMGQKNGISITADELAQKAGTISYEILTNIG 362


>gi|315655821|ref|ZP_07908719.1| D-alanine racemase [Mobiluncus curtisii ATCC 51333]
 gi|315489885|gb|EFU79512.1| D-alanine racemase [Mobiluncus curtisii ATCC 51333]
          Length = 442

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 182/443 (41%), Gaps = 90/443 (20%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S   +R  ++L+A + N   M   + +++  A+VK NAYG G E++A A   AG +   V
Sbjct: 7   SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66

Query: 63  TSVEEGVKLRLY-------------TP-----QARIF--VLYGIHPGQEKIIFD------ 96
               E  +LR Y             TP     ++R++     G+       I        
Sbjct: 67  AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYAPH 126

Query: 97  TNLIPVI--------SSVPQLTFYSKLMSCGVSHPYA---LQVDTGFNRLGLSLQE---A 142
           T+L+PV+        S++ QL   S+  +C  +   A   L+VDTG  R G + ++    
Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSR--ACDAAGKRARLHLKVDTGLCRAGATDEDFPVL 184

Query: 143 LDFTHNSFNKKLGQLSLIISHLA---CADDPSSHVNSVQLERFRTL--ISHYKGIEASL- 196
                      L ++S + SHLA        +      QL+ F     ++   G+   L 
Sbjct: 185 CKLARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLR 244

Query: 197 --ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALA 250
             A+++GI+  P  H+ L R GIS YG +     +   Q     V+  E  ++ +++   
Sbjct: 245 HIAATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVLRLETNVVQVKRVEK 304

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           G  VSYGG+        + +  +GYADG    L  L           G+ +IKG   PI+
Sbjct: 305 GAAVSYGGEWVAPGPRWLVLLPVGYADG----LHRLAKNR-------GETWIKGRRAPIV 353

Query: 311 GKITMDMTMFDITDSLS---------IEVGDYIQIFGPDIK---------------LDDV 346
           G+I MD  + D+  ++          +E G+   IFG D K                DD 
Sbjct: 354 GRIPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFG-DPKDCLLGGIPGAPALPTADDW 412

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + T NY+++  I     + Y
Sbjct: 413 AEWTDTINYEVITSISPNVPRVY 435


>gi|239918156|ref|YP_002957714.1| alanine racemase [Micrococcus luteus NCTC 2665]
 gi|281415657|ref|ZP_06247399.1| alanine racemase [Micrococcus luteus NCTC 2665]
 gi|239839363|gb|ACS31160.1| alanine racemase [Micrococcus luteus NCTC 2665]
          Length = 401

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 32/261 (12%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNS-VQLER 181
           L+ DTG  R G + +    F   +   +   L ++  + SHL  AD+P     +  QL R
Sbjct: 145 LKADTGLGRHGCTPERWPAFVARAAELEAAGLVRVEGVFSHLGVADEPDRAAETTAQLLR 204

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH---- 230
           F  + +         +   LA++   L  P+ H  + R G+ LYG +   ++  +     
Sbjct: 205 FERMAAEAAETLGHPLLRHLANTPATLARPDTHLDMVRVGLGLYGLSPFAEVTAAELGLR 264

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P  ++VT  A +   +   AG+ VSYG +      + + +  +GYADG P  + G     
Sbjct: 265 PAMSLVTVLANV---KAVPAGQGVSYGFRHVTAEPTTLGLVPVGYADGVPRVVEGT---- 317

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DIKLDDVAL 348
              V +GG+       VP++G+I MD  + D+    +   GD +++FGP   I +++ A 
Sbjct: 318 --RVHVGGR------TVPVVGRIAMDQFVVDLGPDAADAPGDAVELFGPASGIPVEEWAA 369

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A+GT NY+L+ RIG R  + +
Sbjct: 370 AAGTINYELVTRIGGRVDRQH 390


>gi|116511664|ref|YP_808880.1| alanine racemase [Lactococcus lactis subsp. cremoris SK11]
 gi|123125695|sp|Q030B4|ALR_LACLS RecName: Full=Alanine racemase
 gi|116107318|gb|ABJ72458.1| alanine racemase [Lactococcus lactis subsp. cremoris SK11]
          Length = 367

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 157/376 (41%), Gaps = 39/376 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL A++NN       ++ NA     VK +AYG G  +++ A+ +  V  F V++++E +
Sbjct: 13  VDLKAIRNNIEKFKKHINPNAEIWPAVKADAYGHGSVEVSKAVSDL-VGGFCVSNLDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR +     I VL GI P    I    N+     S+  L    +  +        + VD
Sbjct: 72  ELRNHLVTKPILVLSGIVPEDVDIAAALNISLTAPSLEWLKLVVQEEAELSDLKIHIGVD 131

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G  R+G+   E  +      +K       I +H A AD            +F+   + +
Sbjct: 132 SGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADE-------TKFKNQQARF 184

Query: 190 KGIEASLASSSGILLGPN-----YHFQ----LTRPGISLYG---GTDKINKSHPMQTVVT 237
             I A L+     +   N     +H +    + R GIS+YG       +     ++  ++
Sbjct: 185 NKIMAGLSRQPKFIHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEIEPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  I+K  AGE V YG   + + ++ I    IGYADG+   + G            
Sbjct: 245 LVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            K  + G    I+G++ MD  M  +  S  +  G  + + G D    I   DVA   GT 
Sbjct: 294 -KVLVDGKFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKANEITTTDVADWRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIKRIY 366


>gi|262037799|ref|ZP_06011241.1| alanine racemase [Leptotrichia goodfellowii F0264]
 gi|261748271|gb|EEY35668.1| alanine racemase [Leptotrichia goodfellowii F0264]
          Length = 374

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 168/378 (44%), Gaps = 43/378 (11%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            ++L+I+   ++ N   + +++ N     V+KDNAYGL  + I P L       F V  +
Sbjct: 2   LIKLEINRKNIEKNLEKIKSINKN--IICVLKDNAYGLEIKNILPILIENDCFYFAVAYI 59

Query: 66  EEGVKLRL-----YTPQA---RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
            E ++++      Y  +A   +I  L  I   + K     ++   I +  QL  Y    +
Sbjct: 60  GEALEIKKIIQKKYPDKADKIKIMTLNYIEEKEIKKTVKNDIELTIFNFEQLESYINASA 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G      ++++TG NRLG +  E    T         ++  + SH++ A++        
Sbjct: 120 KGKKLKIHIKLNTGMNRLGFNENEIDKLTEILRGNPNLEIISVFSHISHAENKKE--TEE 177

Query: 178 QLERFRTLIS---------HYKGIEASLASSSGILLG--PNYHFQLTRPGISLYGGTDKI 226
           Q+ ++  ++S          +K I+AS      +L      Y++   R G+++YG  + +
Sbjct: 178 QIIKYDKMMSVFDKNSIKYKFKHIQAS-----PLLFKYKEKYNYDFVRTGMAIYG-MEPL 231

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            +   +   V   ++II IRK   GE VSYG  + L +D  IA+  +GYA G    +   
Sbjct: 232 KEKVGLYNTVKLSSKIINIRKVKKGESVSYGNGEPLEKDGKIAIIPVGYAHGLQKQI--- 288

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIK 342
             E+  +  L     IKG    ILG+I MDM + DITD     +G    I G     +I 
Sbjct: 289 --ENKNAYVL-----IKGKRSYILGEICMDMIITDITDIEDAVIGSEAVIIGKQGSEEIS 341

Query: 343 LDDVALASGTTNYDLLVR 360
           L  +A  +GT   D+L +
Sbjct: 342 LSKMAEWTGTIQDDVLTK 359


>gi|229188510|ref|ZP_04315554.1| Alanine racemase [Bacillus cereus ATCC 10876]
 gi|228594973|gb|EEK52748.1| Alanine racemase [Bacillus cereus ATCC 10876]
          Length = 389

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|47567489|ref|ZP_00238201.1| alanine racemase [Bacillus cereus G9241]
 gi|228983498|ref|ZP_04143708.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229154011|ref|ZP_04282140.1| Alanine racemase [Bacillus cereus ATCC 4342]
 gi|47555891|gb|EAL14230.1| alanine racemase [Bacillus cereus G9241]
 gi|228629532|gb|EEK86230.1| Alanine racemase [Bacillus cereus ATCC 4342]
 gi|228776242|gb|EEM24598.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 389

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G+       A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGKRVPIVGRVTMDQFMIHL--PCKVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|311114795|ref|YP_003986016.1| alanine racemase [Gardnerella vaginalis ATCC 14019]
 gi|310946289|gb|ADP38993.1| alanine racemase [Gardnerella vaginalis ATCC 14019]
          Length = 451

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 187/410 (45%), Gaps = 58/410 (14%)

Query: 11  IDLTALKNNWHSM-----NALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +DL AL++N  ++       L    ++ AV   VK +AYG G    A A    G      
Sbjct: 28  VDLKALRDNMRTLIERVSKDLQPGQKSPAVMGVVKADAYGHGLIPSALAALAGGATWLGT 87

Query: 63  TSVEEGVKLR---LYTPQARIFVLYGIHPGQ---EKIIFDTNL-IPVISSVPQLTFYSKL 115
               E ++LR   + + + RI       P     + I  D ++ +  + S+  +   +K 
Sbjct: 88  AQPYEALRLRACGIDSSRCRILTWLTSAPTSLFADLINADIDISVGSLDSIDAVALAAK- 146

Query: 116 MSCGVSHPYALQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACAD 168
            S G +    ++VDTGF R G +       L++  +++     + +GQ S    HLA AD
Sbjct: 147 -SVGAAARIHVKVDTGFGRNGFTPAGFSDALEKLSEYSSQGLIEVIGQWS----HLAVAD 201

Query: 169 DPS--SHVNSV--QLERFRTLISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISL 219
            P     V+S   Q+E+F          G+E     LA+++  L  P   F+L RPGI L
Sbjct: 202 CPDVPEFVSSTDRQIEQFHDFTRRMCEAGLEPKIRHLANTAATLNRPEIRFELVRPGIGL 261

Query: 220 YGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275
           YG        + +++ ++  +T +A++  ++   AG  +SYG       ++  A+  +GY
Sbjct: 262 YGYEPDPVMGVPQTYDLRPAMTLQAQLGTVKSVEAGHGISYGRTYLTPDNTSTAIVPLGY 321

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIK------GYMVPILGKITMDMTMFDITDS---L 326
           ADG     SG D + S  V   G G ++        ++ + G++ MD  + D+  S   L
Sbjct: 322 ADGILRAASGYDMQGSRHVNKPG-GPVRVETNNGARILHVSGRVCMDQFIVDLKGSAKEL 380

Query: 327 SIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            ++ GD +++FGP       +   DD A A+GT +Y+++  IG R  + Y
Sbjct: 381 GVKEGDTVRLFGPGRGIEYAEPTADDWAAAAGTISYEIMTGIGPRVPRLY 430


>gi|146299078|ref|YP_001193669.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium johnsoniae
           UW101]
 gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101]
          Length = 822

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 173/384 (45%), Gaps = 49/384 (12%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L A+ +N +   + L+ + +   +VK   YG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLDAINHNLNYFKSKLADDVKIMVMVKAFGYGNGGLEIAKLLEHNKVNYLGVAFADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           G+ L+    +  I VL   +P       I    L P I S+  L  + K+         P
Sbjct: 523 GISLKNGGIKLPIMVL---NPESTSFPSIIQYKLEPEIYSIKGLNAFLKIAREKNLKDFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL--------SLIISHLACADDPSSHVN 175
             ++VDTG +RLG        F  N+ ++ +  L          I+SHLA +DDP  H +
Sbjct: 580 IHIKVDTGMHRLG--------FEDNTIDELIATLKGNSTVRVQSILSHLATSDDPK-HFD 630

Query: 176 SVQ-----LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
            V+      ER  + +     I     + ++SGI   P+  + + R GI LYG ++   +
Sbjct: 631 FVEKQISLFERLSSKLISELNINPIRHILNTSGISNFPDAQYNMVRLGIGLYGVSNDPAE 690

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V T ++ I  +R   AG+ V YG +    +++ IA   IGYADG          
Sbjct: 691 QKYLENVGTLKSIISQVRTIPAGDSVGYGRRFMADKETKIATIPIGYADGI--------- 741

Query: 289 EHSPSVFLGGK-GF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
               S   G + GF  IK     I+G + MDM M D++  +  + GD + IFG    + +
Sbjct: 742 ----SRLWGNQIGFVTIKNQKAYIVGSVCMDMLMVDVS-HIDCKEGDSVIIFGESPTVIE 796

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A A  T  Y+++  I  R  + +
Sbjct: 797 MAEALKTIPYEIMTSISQRVKRVF 820


>gi|30018501|ref|NP_830132.1| alanine racemase [Bacillus cereus ATCC 14579]
 gi|218233448|ref|YP_002365079.1| alanine racemase [Bacillus cereus B4264]
 gi|228956674|ref|ZP_04118465.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229041138|ref|ZP_04189897.1| Alanine racemase [Bacillus cereus AH676]
 gi|229107913|ref|ZP_04237544.1| Alanine racemase [Bacillus cereus Rock1-15]
 gi|229125746|ref|ZP_04254775.1| Alanine racemase [Bacillus cereus BDRD-Cer4]
 gi|229143037|ref|ZP_04271474.1| Alanine racemase [Bacillus cereus BDRD-ST24]
 gi|229148639|ref|ZP_04276893.1| Alanine racemase [Bacillus cereus m1550]
 gi|29894041|gb|AAP07333.1| Alanine racemase [Bacillus cereus ATCC 14579]
 gi|218161405|gb|ACK61397.1| alanine racemase [Bacillus cereus B4264]
 gi|228634897|gb|EEK91472.1| Alanine racemase [Bacillus cereus m1550]
 gi|228640426|gb|EEK96819.1| Alanine racemase [Bacillus cereus BDRD-ST24]
 gi|228657719|gb|EEL13528.1| Alanine racemase [Bacillus cereus BDRD-Cer4]
 gi|228675536|gb|EEL30749.1| Alanine racemase [Bacillus cereus Rock1-15]
 gi|228727200|gb|EEL78398.1| Alanine racemase [Bacillus cereus AH676]
 gi|228803012|gb|EEM49839.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 389

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|322392695|ref|ZP_08066155.1| alanine racemase [Streptococcus peroris ATCC 700780]
 gi|321144687|gb|EFX40088.1| alanine racemase [Streptococcus peroris ATCC 700780]
          Length = 367

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 162/374 (43%), Gaps = 35/374 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A++ N   M A +       AVVK NAYG G   +A A+ N  V  F V++++E +
Sbjct: 13  IDLGAIRYNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVATAIQN-DVDGFCVSNIDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPYAL 126
           +LR      RI +L         +    N+   ++    + QL      +S    H   L
Sbjct: 72  ELRQAGIDQRILILGVTEVASIDLAKKYNITLAVAGLEWIQQLLAEEPDLSGLNVH---L 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++D+G  R+G       +       +    +  I +H A AD+ S      QL RF+ ++
Sbjct: 129 KIDSGMGRIGFRESRDAEQAQALLKEHGASVEGIFTHFATADEESDIYFYKQLNRFKEIL 188

Query: 187 SHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAE 239
           S  K     + AS  +S+  L   +  F   R G ++YG       +   + ++  ++ E
Sbjct: 189 SELKDRPDLVHAS--NSATTLWHTDTIFNAVRMGDAMYGLNPSGQVLTLPYELKPALSLE 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ ++K   G  + YG   +   + +IA   IGYADG+   +         SV + G+
Sbjct: 247 SALVHVKKVPTGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVLVDGQ 300

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
                   PI+G+++MD     +     I  G  + + G     +I   DVA+  GT NY
Sbjct: 301 A------CPIVGRVSMDQITIRLPKVYPI--GTKVTLIGSNGDQEITATDVAVYRGTINY 352

Query: 356 DLLVRIGTRYAKFY 369
           +++  +  R  + Y
Sbjct: 353 EVVCLLSDRIPREY 366


>gi|313634120|gb|EFS00784.1| alanine racemase [Listeria seeligeri FSL N1-067]
          Length = 371

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 157/380 (41%), Gaps = 43/380 (11%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID +A++ N  +    L  N    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 14  IEIDRSAIRENIKNEQKKLPKNVAVWAVVKANAYGHGIIEVAKTAKEAGAKGFCVAILDE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR    Q    ++ G    ++  +   N I        LT + +    GV     L+
Sbjct: 74  ALALREAGFQDDFILVLGATRKEDANLAAHNNI-------SLTIFREDWLDGVHLETPLK 126

Query: 128 V----DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           V    D+G  RLG+ S +EA           +  L    +H A AD   +     QL +F
Sbjct: 127 VHLKIDSGMGRLGIRSAEEAEQIEAKIVQTDMFFLEGAYTHFATADQLETSYFEQQLAKF 186

Query: 183 RTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQ 233
             ++   KG+++       A+S+  LL     F   R GIS+YG    I    N    ++
Sbjct: 187 DAIL---KGLKSRPRFVHAANSAAALLQSQIGFDAVRFGISMYGLAPSIEIKSNLPFKLK 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +     ++ ++K   G+ VSYG     T    IA   IGYADG     SG        
Sbjct: 244 PALALYTEMVHVKKLAPGDSVSYGATYTATEREWIATLPIGYADGLIRHYSGF------- 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  + G   PI+G++ MD T+  +      + G  + I G D    +  DD A  
Sbjct: 297 -----QVLVDGKKAPIIGRVCMDQTIIKL--PYEFQTGTKVTIIGMDHGNSVTADDAAKY 349

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++   +  R  + Y
Sbjct: 350 LDTINYEVTCLLTERIPRKY 369


>gi|163857474|ref|YP_001631772.1| catabolic alanine racemase [Bordetella petrii DSM 12804]
 gi|226711028|sp|A9IU63|ALR_BORPD RecName: Full=Alanine racemase
 gi|163261202|emb|CAP43504.1| catabolic alanine racemase [Bordetella petrii]
          Length = 376

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 150/350 (42%), Gaps = 40/350 (11%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AV+K NAYG G E        A  Q   +  + E V+ R       I +L G   P    
Sbjct: 41  AVIKANAYGHGIEAAVAGFSAA--QGLAMLDLAEAVRCREAGWGGPILLLEGFFQPADLD 98

Query: 93  IIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGL-------SLQEALD 144
           +I   +L   + +  QL   ++  +S  V     L++++G NRLG        +   AL 
Sbjct: 99  LIDRYHLSATVHTREQLDMLAQARLSRRVD--IMLKLNSGMNRLGFDPDAYGSAHARALQ 156

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL 204
                    +G+++    H ACAD         QL  F+++         S+ +S+  L 
Sbjct: 157 LREQGVVGAVGRMT----HFACADGTPGVAG--QLRVFQSVTQGLADGPVSVCNSAATLR 210

Query: 205 GPNY------HFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVS 255
            P             RPGI LYG +   D    S  ++  ++  ++II ++   AG  V 
Sbjct: 211 YPEIAVAHGAQAHWVRPGICLYGASPFADADAASFGLRPAMSLRSQIIGVQDLPAGAEVG 270

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           YG   +  R   + V A GYADGYP         H+ +   G    + G    ++G+++M
Sbjct: 271 YGATFRAERPMRVGVVACGYADGYP--------RHAGT---GTPVVVGGVRTRLVGRVSM 319

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTR 364
           DM M D+    +  +G  + ++G D   +D+VA A+GT  Y+LL  +  R
Sbjct: 320 DMLMVDLDPVPAAGIGTPVSLWGQDGPSVDEVAQAAGTIGYELLCALAPR 369


>gi|313888487|ref|ZP_07822154.1| alanine racemase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845516|gb|EFR32910.1| alanine racemase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 385

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 155/377 (41%), Gaps = 31/377 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL   +NN   +    G      +VVK +AY LG   ++    + G+  + V ++ E
Sbjct: 11  IEIDLDKFENNMKIIKDKVGEKTEVMSVVKSDAYRLGALPLSQVSLDLGINYYAVATLSE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            + LR    +  I +L G  P    E  I +   + + S    L       +        
Sbjct: 71  ALSLRKKFDEVNILIL-GYTPRHLYEDAIKNHITLTIYSLNDALVLNELAGNLKEEAKIH 129

Query: 126 LQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLA-CADDPSSHVNSVQLERFR 183
           +  D+G +R+G +   EA       F  +   +  I SH A C  DP       Q + F 
Sbjct: 130 IAFDSGMSRIGFMPSDEAKKEISEIFKLEKINVEGIFSHFAACETDPE--FTDRQFKTFT 187

Query: 184 TLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVV 236
             I     +        +A+S  +L    Y   + RPGI  +G TD   + +   ++ ++
Sbjct: 188 NFIDELGELGCRFKFRHIANSHSVLFHDEYDLDMVRPGIIQFGYTDSDHLPEEFGLEEIL 247

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +A+I  IR+   GE V Y    K  RD+ +    +GYAD +P  LS         V +
Sbjct: 248 SLKAQISSIREVKKGETVGYERFYKCPRDTKVVTLPLGYADAFPRILS-----EKIEVLI 302

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            GK          +G I MD  M D TD +  ++GD + + G     +IK+ D+ + SG 
Sbjct: 303 NGK------RCKQIGLICMDQMMVDATD-VDCKIGDDVVLIGKQGDEEIKVRDICIHSGD 355

Query: 353 TNYDLLVRIGTRYAKFY 369
                +     R  K+Y
Sbjct: 356 CETSFITHFNRRLPKYY 372


>gi|229171087|ref|ZP_04298685.1| Alanine racemase [Bacillus cereus MM3]
 gi|228612417|gb|EEK69641.1| Alanine racemase [Bacillus cereus MM3]
          Length = 389

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 166/390 (42%), Gaps = 38/390 (9%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H  + +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNITHIKDFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS--- 113
                V  ++E + LR       I VL G  P ++  +   N + +  +V Q  +     
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVL-GPSPARDVNVAAENDVAL--TVFQKEWVDEAI 117

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSS 172
           KL     +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +
Sbjct: 118 KLWDGSSTMKYHINFDSGMGRIGIRERKELKAFLKSLEGAPFLELEGVYTHFATADEVET 177

Query: 173 HVNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  + 
Sbjct: 178 SYFDKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVE 237

Query: 228 KS----HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                   ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L
Sbjct: 238 IRPFLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRL 297

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
            G +              I G  VPI+G++TMD  M  +     + +G  + + G     
Sbjct: 298 QGFEV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGKQGDE 343

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I   +VA  SGT NY+++  I  R  + +
Sbjct: 344 YISATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|125624499|ref|YP_001032982.1| alanine racemase [Lactococcus lactis subsp. cremoris MG1363]
 gi|20137246|sp|Q9RLU5|ALR_LACLM RecName: Full=Alanine racemase
 gi|16974088|emb|CAB56755.2| alanine racemase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493307|emb|CAL98277.1| Alr protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071289|gb|ADJ60689.1| alanine racemase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 367

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 157/376 (41%), Gaps = 39/376 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL A++NN       ++ NA     VK +AYG G  +++ A+ +  V  F V++++E +
Sbjct: 13  VDLKAIRNNIEKFKKHINPNAEIWPAVKADAYGHGSIEVSKAVSDL-VGGFCVSNLDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR +     I VL GI P    I    N+     S+  L    +  +        + VD
Sbjct: 72  ELRNHLVTKPILVLSGIVPEDVDIAAALNISLTAPSLEWLKLVVQEEAELSDLKIHIGVD 131

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G  R+G+   E  +      +K       I +H A AD            +F+   + +
Sbjct: 132 SGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADE-------TKFKNQQARF 184

Query: 190 KGIEASLASSSGILLGPN-----YHFQ----LTRPGISLYG---GTDKINKSHPMQTVVT 237
             I A L+     +   N     +H +    + R GIS+YG       +     ++  ++
Sbjct: 185 NKIMAGLSRQPKFIHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEIEPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  I+K  AGE V YG   + + ++ I    IGYADG+   + G            
Sbjct: 245 LVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            K  + G    I+G++ MD  M  +  S  +  G  + + G D    I   DVA   GT 
Sbjct: 294 -KVLVDGKFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKANEITTTDVADWRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIKRIY 366


>gi|223984929|ref|ZP_03635032.1| hypothetical protein HOLDEFILI_02334 [Holdemania filiformis DSM
           12042]
 gi|223963098|gb|EEF67507.1| hypothetical protein HOLDEFILI_02334 [Holdemania filiformis DSM
           12042]
          Length = 607

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 149/341 (43%), Gaps = 26/341 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  AL++N   +  A++      AV+K NAYG G E  A  L   GV+ F V +VEE
Sbjct: 246 VELDGIALRHNLTVLRKAMTPYQEIMAVLKANAYGHGLEPTADFLSRQGVRHFAVATVEE 305

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R   P A I +L  + P +   +    L   ++S  Q     +L   G +    L 
Sbjct: 306 AKVIRAVNPTAEILILGYVPPQRAAEVSRLRLSLTLTSYDQA---CQLDQTGFAIDAHLP 362

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRT 184
           VDTG +RLG    E LD     ++    +++ + SHL  AD+  +        Q++RF  
Sbjct: 363 VDTGMHRLG-EAAEDLDAIVRYYSLSHLRITGLYSHLYEADNLDAEAVAHTQAQIDRFFH 421

Query: 185 LISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVT 237
           +    K  GI+     L  S G L  P     L R GI+L+G            ++ V +
Sbjct: 422 VADALKERGIDPGRLHLQGSYGFLNYPELRCDLVRFGIALFGCVAPFRSRMELDLRPVAS 481

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
              RI  +R    GE   Y        D+ +A+ +IGY+DG              S F G
Sbjct: 482 VHTRIAALRSLRKGEGAGYNHAWTAPCDTTVAILSIGYSDGL----------FRSSSFQG 531

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            +  I G   P++G + MD  + D+  +L   +G+ + + G
Sbjct: 532 VEVLIHGQRRPLIGAMCMDQCLVDL-GTLPAAIGEEVVVIG 571


>gi|260219804|emb|CBA26704.1| Alanine racemase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 364

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 162/371 (43%), Gaps = 31/371 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++  I   AL++N       + +AR  AVVK NAYG G E+    L   G     +  +E
Sbjct: 5   IQATIHTQALRHNLEVCRRAAPDARIWAVVKANAYGHGIERAFEGLR--GADGIALLDLE 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++R    +  I +L G+   ++ ++     L   +    Q+   + +      H   
Sbjct: 63  EAQRVRNLGWRGPILLLEGVFEQRDLELCSRLGLWHTLHCQEQIDMLA-IHKTNEPHRVF 121

Query: 126 LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+V++G NRLG   ++    +T  +   ++ ++SL+ +H + AD P       Q+  F+ 
Sbjct: 122 LKVNSGMNRLGFQPEQVRSAWTRLNALPQVDEISLM-THFSDADGPKGIAG--QMAVFKQ 178

Query: 185 LISHYKGIEASLASSSGILL--GPNYHFQLTRPGISLYGGTDKINK---SH-PMQTVVTA 238
                 G E ++++S+  L   GP       R GI+ YG      +   +H  +Q  +T 
Sbjct: 179 ATDDLPG-ERTVSNSAATLRHSGPGLVSDWVRAGIATYGSAPDYPEHDIAHWGLQPTMTL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A+II  R   AG+ V YG      +   I V A GYADGYP                G 
Sbjct: 238 AAKIIATRALSAGDTVGYGSNFTADKPMRIGVVACGYADGYPRICP-----------TGT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTT 353
              I G    ++G+++MDM   D+       +G  + ++G       + +D++A  +GT 
Sbjct: 287 PVLINGVRSRVVGRVSMDMITVDLDPVPQAGMGSEVTLWGRAANGAVLPIDEIASTAGTV 346

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 347 GYELMCALAQR 357


>gi|296501064|ref|YP_003662764.1| alanine racemase [Bacillus thuringiensis BMB171]
 gi|296322116|gb|ADH05044.1| alanine racemase [Bacillus thuringiensis BMB171]
          Length = 389

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYIPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|259501954|ref|ZP_05744856.1| alanine racemase [Lactobacillus antri DSM 16041]
 gi|259170131|gb|EEW54626.1| alanine racemase [Lactobacillus antri DSM 16041]
          Length = 374

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 158/384 (41%), Gaps = 49/384 (12%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L AL  N  +  A L  +++  AVVK NAYG G   +A A   AG     V  ++E +
Sbjct: 13  INLRALGENIQAQKAALPADSKILAVVKANAYGHGLVPVAQAALRAGATGMCVAILDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA-- 125
           ++R         VL GI P +E  +  +  +   + S+  LT Y +         P    
Sbjct: 73  EIRDSGLDVITLVL-GITPVEEANVAAEAGVSLTVGSLDWLTKYHQFARQFNWKKPLKIH 131

Query: 126 LQVDTGFNRLGLSLQEALDFTH-NSFNKKLG--------QLSLIISHLACADDPSSHVNS 176
           L VDTG  R+G        FT+   FN+ +         +   + +H A AD        
Sbjct: 132 LAVDTGMGRIG--------FTNVAEFNQAVKILRRYPEFEFEGMFTHFATADSADHTYFD 183

Query: 177 VQLERFRTLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKS 229
            Q   ++  I+    +        S++G+           R G+S+YG    GTD     
Sbjct: 184 RQYALWQKFIASLDELPPYTHMANSATGLWHRDQITANTIRMGLSMYGYNPSGTDLPEDL 243

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           H +Q V T  + I  ++K  AGE VSYG       D  +A   IGYADGYP  ++G    
Sbjct: 244 H-LQPVGTLRSSISFVKKLAAGEAVSYGATYTAKHDEWLATVPIGYADGYPRCMTGF--- 299

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                    K  + G   PI G++ MD  M  +     ++    + + G      I  ++
Sbjct: 300 ---------KVLVDGQYCPIAGRVCMDQMMVRLPKYYPVDTP--VVLMGRSGALTITAEE 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  + T NY++L     R  + Y
Sbjct: 349 MAEQAQTINYEILTNFNNRIHRTY 372


>gi|229089375|ref|ZP_04220650.1| Alanine racemase [Bacillus cereus Rock3-42]
 gi|228693956|gb|EEL47644.1| Alanine racemase [Bacillus cereus Rock3-42]
          Length = 389

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 161/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGLSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|161511189|ref|NP_813012.2| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
 gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
          Length = 849

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 162/389 (41%), Gaps = 43/389 (11%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYN 54
           +E L LK+  T L+ N  +M A   + R+           +VK  AYG G  +IA  L  
Sbjct: 478 SEELELKVHETILEVNLGAMVANLNHYRSMLRHPETKMICMVKAAAYGAGSYEIAKTLQE 537

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
             V    V   +EG +LR     + I ++        K +FD  L P + +   L    K
Sbjct: 538 HHVDYLAVAVADEGSELRKAGITSSIIIM-DPELTSFKTMFDYKLEPEVYNFHLLDALIK 596

Query: 115 LMSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS- 171
                G+++ P  +++DTG +RLG S+ E         ++       + SH   +D    
Sbjct: 597 AAEKEGITNFPIHVKLDTGMHRLGFSVDEIPLLIRRLKSQNAVIPRSVFSHFVGSDSAQF 656

Query: 172 SHVNSVQLERF-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
                 Q+E F       +   SH   I   + +++GI   P   F + R GI LYG   
Sbjct: 657 DFFTRQQIELFEKGSQELQEAFSH--KILRHICNTAGIERFPGAQFDMVRLGIGLYG-VS 713

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            I+ S  +  V T +  I+ IR     + V Y     LTR S IA   IGYADG    L 
Sbjct: 714 PIDNS-IINNVSTLKTTILQIRDVPGEDTVGYSRMGHLTRPSRIAAIPIGYADGLNRHL- 771

Query: 285 GLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                        G+G     + G   P +G I MD+ M D+TD +    GD   IFG D
Sbjct: 772 -------------GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDKAVIFGDD 817

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +  ++   GT  Y++L  I  R  + Y
Sbjct: 818 LPITTLSDKLGTIPYEVLTSISNRVKRVY 846


>gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 821

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 161/377 (42%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N  +  + L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-P 123
           G  LR       I ++   +P     K +FD  L P + S   L    K     GV++ P
Sbjct: 523 GSDLRKAGITCSIMIM---NPELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPS-SHVNSVQLER 181
             +++DTG +RLG + +E  +   +   K+   +   + SHL  +D          Q+E 
Sbjct: 580 IHIKLDTGMHRLGFAPEEIPELI-DRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEM 638

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   F + R GI LYG     N+   +  V 
Sbjct: 639 FEAASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQI--INNVS 696

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I +    E V Y  +  L RDS IA   IGYADG    L             
Sbjct: 697 TLKTTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRL------------- 743

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G G     + G     +G I MD+ M D+TD +  + GD   IFG D+ +  ++    T
Sbjct: 744 -GNGHAYCLVNGQKASYVGNICMDVCMIDVTD-IDCKEGDKAIIFGDDLPVTVLSEILET 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +  R  + Y
Sbjct: 802 IPYEILTSVSNRVKRVY 818


>gi|116491612|ref|YP_811156.1| alanine racemase [Oenococcus oeni PSU-1]
 gi|116092337|gb|ABJ57491.1| alanine racemase [Oenococcus oeni PSU-1]
          Length = 386

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 167/383 (43%), Gaps = 40/383 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEE 67
           + +DL A  +N   +   +   +  AV+K + YGLG   +A A       D   V++++E
Sbjct: 11  VSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            ++LR       I+VL        K+  D +   ++ ++P L +   L     +   +L 
Sbjct: 71  ALELRQADLTLPIWVLGAWDYSDLKLFIDHD---IVITIPSLAWLQNLPDFEGTLKVSLA 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV---QLERF 182
           +DTG  R+G    + +       +K   QL L  + +H A AD+      +    QL R+
Sbjct: 128 IDTGMTRIGFDKADEISAAKKIIDKN-PQLDLFSVYTHFATADEAGEKSKAYFEEQLRRW 186

Query: 183 RTLISHYKGIEASL---ASSSGILL---GPNYHFQLTRPG-----ISLYGGTDKINKSHP 231
           + L  + +G + SL   A+S+  +     P   F   RPG     +++  G  K+  +  
Sbjct: 187 QELTIN-QGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPPNLH 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ + +  + I  +R     + +SYG  +++  D  +A    GY DG+      L     
Sbjct: 246 LERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGW------LRRMQK 299

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
            SV + GK       +PI+G+ITMD TM  +     I  G  + + G D    I +++VA
Sbjct: 300 SSVIINGK------RMPIIGRITMDQTMVKLDRKYPI--GTRVTLIGKDGGEQITVEEVA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
             S T   ++   +  R  + YT
Sbjct: 352 NYSHTIVDEIQTTLAPRIKRIYT 374


>gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
 gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
          Length = 821

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 161/377 (42%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N  +  + L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-P 123
           G  LR       I ++   +P     K +FD  L P + S   L    K     GV++ P
Sbjct: 523 GSDLRKAGITCSIMIM---NPELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPS-SHVNSVQLER 181
             +++DTG +RLG + +E  +   +   K+   +   + SHL  +D          Q+E 
Sbjct: 580 IHIKLDTGMHRLGFAPEEIPELI-DRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEM 638

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   F + R GI LYG     N+   +  V 
Sbjct: 639 FEAASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQI--INNVS 696

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I +    E V Y  +  L RDS IA   IGYADG    L             
Sbjct: 697 TLKTTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRL------------- 743

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G G     + G     +G I MD+ M D+TD +  + GD   IFG D+ +  ++    T
Sbjct: 744 -GNGHAYCLVNGQKASYVGNICMDVCMIDVTD-IDCKEGDKAIIFGDDLPVTVLSEILET 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +  R  + Y
Sbjct: 802 IPYEILTSVSNRVKRVY 818


>gi|187931921|ref|YP_001891906.1| alanine racemase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|226711044|sp|B2SHB9|ALR_FRATM RecName: Full=Alanine racemase
 gi|187712830|gb|ACD31127.1| alanine racemase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 365

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 172/380 (45%), Gaps = 48/380 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV--TSVE 66
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  + DFF    S+E
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHD--LVDFFAVANSLE 61

Query: 67  EGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSH 122
                R+        +++G+  +   EK+I +   + +     + +L   +K +   V  
Sbjct: 62  ---AFRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKV-- 116

Query: 123 PYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            YA + ++TG NR+G++  +A      ++      L  + SHLACAD+     N  Q  R
Sbjct: 117 -YAHININTGMNRMGVNYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNR 175

Query: 182 FRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHP 231
           F +++   KG+       L++S G L      + + RPGI  YG       D+ I +  P
Sbjct: 176 FDSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKP 235

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  +++   +II +++   GE V Y    +      +AV  IGY DG+P           
Sbjct: 236 IARLLSKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE--------- 283

Query: 292 PSVFLGGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD--- 345
               LG +GF  I   M P+ G+++MD +T+    +   ++VGD +++     +  +   
Sbjct: 284 ----LGDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAF 339

Query: 346 -VALASGTTNYDLLVRIGTR 364
            +A  + T  YD++  +  R
Sbjct: 340 SIAKQTNTIEYDIMSTLNDR 359


>gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN]
 gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN]
          Length = 826

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 169/379 (44%), Gaps = 40/379 (10%)

Query: 9   LKIDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+ +N  W+  + L    +   ++K +AYG G  +IA  L    V    V   +
Sbjct: 467 LEVNLNAVVDNLNWYR-SFLKPETKLVCMIKADAYGAGAVEIAKTLEEHRVDYLAVAVAD 525

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-H 122
           EG  LR    ++ I ++   +P     K +FD  L P I S   L    K     G++ +
Sbjct: 526 EGATLRRNGIKSNIMIM---NPEMSSFKTLFDYELEPEIYSFRLLDALIKAAEKEGITGY 582

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACADDPSSHVNSVQ 178
           P  ++ DTG +RLG + +  +        K   Q +LI     SH   +D+  +  +S  
Sbjct: 583 PVHIKFDTGMHRLGFNPRTDI---AQLIEKLRHQNALIPRSVFSHFVGSDN--NDFDSFS 637

Query: 179 LERFRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            E+F+      K ++++ +        +S+GI   P     + R G+ LYG   + N+  
Sbjct: 638 AEQFKLFDEGSKQLQSAFSHRILRHIDNSAGIEHFPERQLDMCRLGLGLYGINPRNNE-- 695

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +  V T +  I+ +R    GE V Y  +  + +DS+IA   IGYADG    L   +   
Sbjct: 696 IINNVSTLKTTILQMRNVPKGETVGYSRRGVIEKDSVIAAIPIGYADGLNRKLGNRNC-- 753

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                      + G     +G I MD+ + D+T  +  + GD ++IFG ++ +  ++   
Sbjct: 754 --------YCLVNGQKADYVGNICMDVALIDVT-GIDCKEGDSVEIFGDNLPVTILSNVL 804

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++L  +  R  + Y
Sbjct: 805 ETIPYEVLTTVSNRVKRVY 823


>gi|229101047|ref|ZP_04231827.1| Alanine racemase [Bacillus cereus Rock3-28]
 gi|228682367|gb|EEL36464.1| Alanine racemase [Bacillus cereus Rock3-28]
          Length = 389

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 161/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEASFYRDTWVEVDLDAIYNNITHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDINVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           +      + +  D+G  R+G+  ++ L +F  +       +L  + +H A AD+  +   
Sbjct: 121 NGSSIMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVDGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|306823362|ref|ZP_07456737.1| alanine racemase [Bifidobacterium dentium ATCC 27679]
 gi|304553069|gb|EFM40981.1| alanine racemase [Bifidobacterium dentium ATCC 27679]
          Length = 452

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 128/284 (45%), Gaps = 49/284 (17%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADDPS--S 172
           ++VD+GF R G        FT   F+  L +L  ++           SHLA AD P    
Sbjct: 157 VKVDSGFGRNG--------FTPAGFDAALAKLVPLVKEGVLHVVGQWSHLAVADAPDVPE 208

Query: 173 HVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
            V S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LYG    
Sbjct: 209 FVASTDRQIENFKDFTRRMEAAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLYGYEAD 268

Query: 226 INKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                P    ++  +T +A++  ++   AG  +SYG       D+  A+  IGYADG   
Sbjct: 269 PAMGTPGTYGLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPTDTSTAIVPIGYADGIHR 328

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVP------ILGKITMDMTMFDI---TDSLSIEVGD 332
           + SG D E +  V   G G ++   V       + G++ MD  + D+    D+L I  GD
Sbjct: 329 SASGFDMEGAKHVVKAG-GPVRVMTVEGPRLYRVSGRVCMDQFILDLHGSADALGIHEGD 387

Query: 333 YIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +++FGP       +   DD   A+ T +Y++   +  R  + Y
Sbjct: 388 TVELFGPGRGEDYAEPTADDWGRAADTISYEIFTCLRNRIPRLY 431


>gi|21911099|ref|NP_665367.1| alanine racemase [Streptococcus pyogenes MGAS315]
 gi|28895216|ref|NP_801566.1| alanine racemase [Streptococcus pyogenes SSI-1]
 gi|56808267|ref|ZP_00366035.1| COG0787: Alanine racemase [Streptococcus pyogenes M49 591]
 gi|139473190|ref|YP_001127905.1| alanine racemase [Streptococcus pyogenes str. Manfredo]
 gi|209559906|ref|YP_002286378.1| alanine racemase [Streptococcus pyogenes NZ131]
 gi|25452781|sp|Q8K5Z8|ALR_STRP3 RecName: Full=Alanine racemase
 gi|166969433|sp|A2RCT3|ALR_STRPG RecName: Full=Alanine racemase
 gi|226711064|sp|B5XI21|ALR_STRPZ RecName: Full=Alanine racemase
 gi|21905309|gb|AAM80170.1| putative alanine racemase [Streptococcus pyogenes MGAS315]
 gi|28810462|dbj|BAC63399.1| putative alanine racemase [Streptococcus pyogenes SSI-1]
 gi|134271436|emb|CAM29656.1| alanine racemase [Streptococcus pyogenes str. Manfredo]
 gi|209541107|gb|ACI61683.1| Alanine racemase [Streptococcus pyogenes NZ131]
          Length = 366

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 168/373 (45%), Gaps = 31/373 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S+   +    +T AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + ++     +   I+S+  +                ++V
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGLKVHVKV 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL   + ++   +S  +    +  I +H A AD+      + QL+ F+ LI+ 
Sbjct: 131 DSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFFKKLIAG 190

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEA 240
            +     + AS +++S  +   +  F   R GI  YG    G+D ++   P+Q  ++ E+
Sbjct: 191 LEDKPRLVHASNSATS--IWHSDTIFNAVRLGIVSYGLNPSGSD-LSLPFPLQEALSLES 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ ++   AG+ V YG      +   +    IGYADG+   + G               
Sbjct: 248 SLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFSV------------ 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
            + G    I+G+++MD     I  S +  +G  + + G     +I   D+A    T NY+
Sbjct: 296 LVDGQFCEIIGRVSMD--QLTIRLSKAYPLGTKVTLIGSNQQKNISTTDIANYRNTINYE 353

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 354 VLCLLSDRIPRIY 366


>gi|293395857|ref|ZP_06640139.1| alanine racemase [Serratia odorifera DSM 4582]
 gi|291421794|gb|EFE95041.1| alanine racemase [Serratia odorifera DSM 4582]
          Length = 257

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 18/243 (7%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++++G NRLG +          +   +      ++SH A AD P       Q+      
Sbjct: 23  LKINSGMNRLGFAPARLPQVWQQAQQIRNIAAITLMSHFATADGPQGVTQ--QMATIDAA 80

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEAR 241
            +        LA+S+  L  P  H    RPGI LYG    G  +      +Q  ++  + 
Sbjct: 81  AAALPLPRC-LANSAATLWHPATHGSWVRPGIVLYGASPSGQWRDIAETGLQPTMSLRSE 139

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++    G+ V YG +   +    I + A GYADGYP         H+PS   G   +
Sbjct: 140 IIALQTLQPGDRVGYGWRYAASAVQRIGIVACGYADGYP--------RHAPS---GTPVW 188

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +   +G ++MDM   D+T      +G  ++++G  + +D+VA A+GT  Y+LL  +
Sbjct: 189 VDGVLTRTVGTVSMDMLAVDLTSCPQASIGTPVELWGRHLPVDEVAAAAGTLGYELLTAL 248

Query: 362 GTR 364
             R
Sbjct: 249 AQR 251


>gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 773

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 162/389 (41%), Gaps = 43/389 (11%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYN 54
           +E L LK+  T L+ N  +M A   + R+           +VK  AYG G  +IA  L  
Sbjct: 402 SEELELKVHETILEVNLGAMVANLNHYRSMLRHPETKMICMVKAAAYGAGSYEIAKTLQE 461

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
             V    V   +EG +LR     + I ++        K +FD  L P + +   L    K
Sbjct: 462 HHVDYLAVAVADEGSELRKAGITSSIIIM-DPELTSFKTMFDYKLEPEVYNFHLLDALIK 520

Query: 115 LMSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS- 171
                G+++ P  +++DTG +RLG S+ E         ++       + SH   +D    
Sbjct: 521 AAEKEGITNFPIHVKLDTGMHRLGFSVDEIPLLIRRLKSQNAVIPRSVFSHFVGSDSAQF 580

Query: 172 SHVNSVQLERF-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
                 Q+E F       +   SH   I   + +++GI   P   F + R GI LYG   
Sbjct: 581 DFFTRQQIELFEKGSQELQEAFSH--KILRHICNTAGIERFPGAQFDMVRLGIGLYG-VS 637

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            I+ S  +  V T +  I+ IR     + V Y     LTR S IA   IGYADG    L 
Sbjct: 638 PIDNS-IINNVSTLKTTILQIRDVPGEDTVGYSRMGHLTRPSRIAAIPIGYADGLNRHL- 695

Query: 285 GLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                        G+G     + G   P +G I MD+ M D+TD +    GD   IFG D
Sbjct: 696 -------------GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDKAVIFGDD 741

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +  ++   GT  Y++L  I  R  + Y
Sbjct: 742 LPITTLSDKLGTIPYEVLTSISNRVKRVY 770


>gi|254221103|pdb|3HUR|A Chain A, Crystal Structure Of Alanine Racemase From Oenococcus Oeni
          Length = 395

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 167/383 (43%), Gaps = 40/383 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEE 67
           + +DL A  +N   +   +   +  AV+K + YGLG   +A A       D   V++++E
Sbjct: 12  VSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            ++LR       I+VL        K+  D +   ++ ++P L +   L     +   +L 
Sbjct: 72  ALELRQADLTLPIWVLGAWDYSDLKLFIDHD---IVITIPSLAWLQNLPDFEGTLKVSLA 128

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV---QLERF 182
           +DTG  R+G    + +       +K   QL L  + +H A AD+      +    QL R+
Sbjct: 129 IDTGMTRIGFDKADEISAAKKIIDKN-PQLDLFSVYTHFATADEAGEKSKAYFEEQLRRW 187

Query: 183 RTLISHYKGIEASL---ASSSGILL---GPNYHFQLTRPG-----ISLYGGTDKINKSHP 231
           + L  + +G + SL   A+S+  +     P   F   RPG     +++  G  K+  +  
Sbjct: 188 QELTIN-QGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPPNLH 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ + +  + I  +R     + +SYG  +++  D  +A    GY DG+      L     
Sbjct: 247 LERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGW------LRRMQK 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
            SV + GK       +PI+G+ITMD TM  +     I  G  + + G D    I +++VA
Sbjct: 301 SSVIINGK------RMPIIGRITMDQTMVKLDRKYPI--GTRVTLIGKDGGEQITVEEVA 352

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
             S T   ++   +  R  + YT
Sbjct: 353 NYSHTIVDEIQTTLAPRIKRIYT 375


>gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4]
 gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4]
          Length = 821

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 161/377 (42%), Gaps = 37/377 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N  +  + L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-P 123
           G  LR       I ++   +P     K +FD  L P + S   L    K     GV++ P
Sbjct: 523 GSDLRKAGITCSIMIM---NPELTAFKAMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFP 579

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPS-SHVNSVQLER 181
             +++DTG +RLG + +E  +   +   K+   +   + SHL  +D          Q+E 
Sbjct: 580 IHIKLDTGMHRLGFAPEEIPELI-DRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEM 638

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   F + R GI LYG     N+   +  V 
Sbjct: 639 FEAASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQI--INNVS 696

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ I +    E V Y  +  L RDS IA   IGYADG    L             
Sbjct: 697 TLKTTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRL------------- 743

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G G     + G     +G I MD+ M D+TD +  + GD   IFG D+ +  ++    T
Sbjct: 744 -GNGHAYCLVNGQKASYVGNICMDVCMIDVTD-IDCKEGDKAIIFGDDLPVTVLSEILET 801

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +  R  + Y
Sbjct: 802 IPYEILTSVSNRVKRVY 818


>gi|169632127|ref|YP_001705863.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii
           SDF]
 gi|226711023|sp|B0VNF6|ALR_ACIBS RecName: Full=Alanine racemase
 gi|169150919|emb|CAO99526.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter
           baumannii]
          Length = 367

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 169/382 (44%), Gaps = 58/382 (15%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  +EE  +
Sbjct: 9   IHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDLEEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +R       I +L G+   Q+  +FD     L   I S  Q+ +  +       HPY  Q
Sbjct: 67  IRALGWTGPILLLEGVFSPQD--LFDCVQYQLSFTIHSEAQIEWVEQ-------HPYPAQ 117

Query: 128 VD------TGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV- 177
            D      +G +RLG   Q   +A +  +N  N  + +++ ++ H + AD        + 
Sbjct: 118 FDVFLKMNSGMSRLGFKPQHYVQAWERLNNLAN--VAKITHMM-HFSDADGDRFGQQGID 174

Query: 178 -QLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP- 231
            Q+  F  ++    G E S+++S+ IL    Y  QL     R GI LYG +     +H  
Sbjct: 175 YQITAFEEIVKDLPG-ERSVSNSAAIL---RYQDQLKSDYVRSGIMLYGSSPDY-PTHSI 229

Query: 232 ----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  ++  + II ++     E V YG      +   I + A GYADGY        
Sbjct: 230 ADWGLQPTMSLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGY-------- 281

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IK 342
              SP+   G    +       +G+++MDM   D+T   S +VG  + ++G       + 
Sbjct: 282 QRISPT---GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLP 338

Query: 343 LDDVALASGTTNYDLLVRIGTR 364
           +DDVA++SGT  Y+L+  +  R
Sbjct: 339 IDDVAVSSGTVGYELMCAVTAR 360


>gi|261338093|ref|ZP_05965977.1| alanine racemase [Bifidobacterium gallicum DSM 20093]
 gi|270276712|gb|EFA22566.1| alanine racemase [Bifidobacterium gallicum DSM 20093]
          Length = 466

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 39/279 (13%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNK----KLGQLSLIISHLACADDPSS----HVNSV 177
           ++VDTGF R G +L + LD       +     L +++   SHLA AD P      H    
Sbjct: 171 VKVDTGFGRNGFTLNQ-LDLIAPRLKQLQDAGLFEITGQWSHLAVADAPDVPEFVHETDE 229

Query: 178 QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP- 231
           Q+ RF     H +  GIE     LA+++  L  P  H+ L RPG++LYG         P 
Sbjct: 230 QVARFEEFTRHMQEAGIEPRIRHLANTAATLSRPEIHYDLVRPGVALYGYEPDPAMGTPQ 289

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD- 287
              +   +T +A++  ++    G  +SYG        + +A+  +GYADG   + SG D 
Sbjct: 290 DYGLTPAMTLQAQLSSVKHVPQGTGLSYGRVYVTDAPTSVAIVPVGYADGIHRSASGFDR 349

Query: 288 --SEHS-----PSVFLGGKGFIKGYMVPILGKITMDMTMFDI---TDSLSIEVGDYIQIF 337
             S H      P  F+   G    +   + G++ MD  + D+      L I++GD +Q+F
Sbjct: 350 CGSRHEDRKGGPVAFMTRDGVQVRH---VSGRVCMDQFIVDLHGDAKELGIDIGDTVQLF 406

Query: 338 GP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           GP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 407 GPGRGEAYGEPTADDWAKAADTISYEIFTCLRNRVPRLY 445


>gi|307705415|ref|ZP_07642272.1| alanine racemase [Streptococcus mitis SK597]
 gi|307621014|gb|EFO00094.1| alanine racemase [Streptococcus mitis SK597]
          Length = 367

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 170/377 (45%), Gaps = 41/377 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPEGTLKFAVVKANAYGHGAVAVATAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-----CGVSHPY 124
           +LR       I +L G+   + +++       +  +V  L +   L+       G++   
Sbjct: 72  ELRQAGLSKPILIL-GV--SELEVVSLAKEYDITLTVAGLEWIQALLDKEADLTGLT--V 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++D+G  R+G       +   +   +   ++  I +H A AD+ S    +VQLERF++
Sbjct: 127 HLKIDSGMGRIGFREAREAEQAQDLLQQHGARVEGIFTHFATADEESDDYFNVQLERFKS 186

Query: 185 LISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVV 236
           +++  K + E   AS+S   L   +H    F   R G ++YG     D ++  + +   +
Sbjct: 187 ILASMKEVPELVHASNSATTL---WHAETIFNAVRMGDAMYGLNPSGDALDLPYDLTPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV +
Sbjct: 244 FLESALVHVKTVSAGAYMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVLV 297

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGT 352
            G+        PI+G+++MD     +     +  G  + +     G +I    VA   GT
Sbjct: 298 DGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGGKEITATQVATYRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  +  R  + Y
Sbjct: 350 INYEVVCLLSDRIPREY 366


>gi|121611251|ref|YP_999058.1| alanine racemase [Verminephrobacter eiseniae EF01-2]
 gi|166969436|sp|A1WQY3|ALR_VEREI RecName: Full=Alanine racemase
 gi|121555891|gb|ABM60040.1| alanine racemase [Verminephrobacter eiseniae EF01-2]
          Length = 371

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 162/380 (42%), Gaps = 44/380 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ +I  +AL+ N   +     +A+  AVVK NAYG G  ++  +L   G   F +  + 
Sbjct: 5   IQARIHSSALQANLRRVRQSVPDAKVWAVVKANAYGHGIARVFESLR--GADGFALLDLA 62

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   LR    +  I +L G+  P   ++     L  V+    Q+   +   S    H + 
Sbjct: 63  EAQGLRGLGWRGPILLLEGVFEPRDLELCSRLGLWHVVHCDEQIDMLAAHRSQAPQHVF- 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLE 180
           L+++ G NRLG + Q      + S   +LG L+ +     ++H + AD P     + QL 
Sbjct: 122 LKLNAGMNRLGFAPQR-----YRSAWARLGALAQVDEISLMAHFSDADGPRG--IAPQLA 174

Query: 181 RFRTLISHYKGIEASLASSSGIL---LGPNYHFQLTRPGISLYGGTDKI---NKSH-PMQ 233
            F        G   SL +S+  L      +      R GI LYG        +  H  +Q
Sbjct: 175 AFVRATQDLPGAR-SLCNSAATLRHAADASVRADWVRAGIVLYGSAPDFPGHDAGHWGLQ 233

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T   R+I +++  AG+ V YG +        I VAA GYADGYPL            
Sbjct: 234 PAMTLATRLIGVQQLQAGDTVGYGARFVAPGPMAIGVAACGYADGYPLHCG--------- 284

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD----SLSIEVGDYIQIFGPD-----IKLD 344
              G    + G    ++G+++MDM   D+T      L    G  + ++G       + +D
Sbjct: 285 --TGTPVLVDGIRTRVVGRVSMDMLTVDLTPLQRAGLQPGFGSEVTLWGRASSGAVLSID 342

Query: 345 DVALASGTTNYDLLVRIGTR 364
           +VA A GT  Y+L+  +  R
Sbjct: 343 EVAQAGGTLGYELMCALAQR 362


>gi|167626353|ref|YP_001676853.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|226711043|sp|B0TYB0|ALR_FRAP2 RecName: Full=Alanine racemase
 gi|167596354|gb|ABZ86352.1| Alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 365

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 174/379 (45%), Gaps = 46/379 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           LKI    L NN   +    GNA+    VK NAYG G E+I    ++  + DFF V +  E
Sbjct: 4   LKISKQTLTNNIKIIREYVGNAKICFPVKANAYGHGIEEIVENTHD--LVDFFAVANSLE 61

Query: 68  GVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSHP 123
             ++   T +    +++G+  +   E+++ +   + +     + +L   +K ++  +   
Sbjct: 62  AFRVTAITKKP--VLVFGVIYYEYLERMVSENIRVSIQDYDDIEKLEQIAKELNKKIY-- 117

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             + V+TG NR+G+   +       ++N K   L  + SHLACAD+     N+ Q +RF 
Sbjct: 118 VHINVNTGMNRMGVCYNDVCRTIKRAYNSKWIILEGVYSHLACADNRDHPTNAKQKKRFS 177

Query: 184 TLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK------INKSHPMQ 233
            ++ + K     I   L++S G L      + + RPGI +YG   +      I +  P+ 
Sbjct: 178 EIVEYAKELSQDIICHLSNSYGFLGDKEICYDMVRPGILIYGFLPEFYVERSIREIKPIA 237

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +++   +II + +   G+ V Y    +      +AV  IGY DG+P             
Sbjct: 238 RLLSKVVKIIELEE---GDGVGYSMIYRGFDGEKVAVIPIGYGDGFPRE----------- 283

Query: 294 VFLGGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD----- 345
             LG +GF  I   M P+ G+++MD +T+    +  +++VGD +++   DI  +      
Sbjct: 284 --LGDRGFVNIDNVMYPMAGRMSMDGLTVSLGHNEHNVKVGDVVELIS-DIPRNRNSAFL 340

Query: 346 VALASGTTNYDLLVRIGTR 364
           +A    T  YD++  +  R
Sbjct: 341 MAKQVNTIEYDIMSTLNDR 359


>gi|229094951|ref|ZP_04225953.1| Alanine racemase [Bacillus cereus Rock3-29]
 gi|229113905|ref|ZP_04243337.1| Alanine racemase [Bacillus cereus Rock1-3]
 gi|228669546|gb|EEL24956.1| Alanine racemase [Bacillus cereus Rock1-3]
 gi|228688464|gb|EEL42340.1| Alanine racemase [Bacillus cereus Rock3-29]
          Length = 389

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEASFYRDTWVEVDLDAIYNNITHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDINVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVDGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|169656659|ref|YP_001428845.2| alanine racemase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290953541|ref|ZP_06558162.1| alanine racemase [Francisella tularensis subsp. holarctica URFT1]
 gi|295313145|ref|ZP_06803827.1| alanine racemase [Francisella tularensis subsp. holarctica URFT1]
 gi|189027647|sp|A7ND36|ALR_FRATF RecName: Full=Alanine racemase
 gi|164551727|gb|ABU61889.2| alanine racemase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 365

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 168/381 (44%), Gaps = 50/381 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV--TSVE 66
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  + DFF    S+E
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHD--LVDFFAVANSLE 61

Query: 67  EGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--- 121
                R+        +++G+  +   EK+I +     +  S+    +  KL         
Sbjct: 62  ---AFRVTAVAKNPVLVFGVIYYEYIEKMISEN----IRVSIQDYEYIEKLEQIAKELDK 114

Query: 122 HPYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             YA + ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  
Sbjct: 115 KVYAHININTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKN 174

Query: 181 RFRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSH 230
           RF +++   KG+       L++S G L      + + RPGI  YG       D+ I +  
Sbjct: 175 RFDSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIK 234

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P+  +++   +II +++   GE V Y    +      +AV  IGY DG+P          
Sbjct: 235 PIARLLSKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE-------- 283

Query: 291 SPSVFLGGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD-- 345
                LG +GF  I   M P+ G+++MD +T+    +   ++VGD +++     +  +  
Sbjct: 284 -----LGDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSA 338

Query: 346 --VALASGTTNYDLLVRIGTR 364
             +A  + T  YD++  +  R
Sbjct: 339 FSIAKQTNTIEYDIMSTLNNR 359


>gi|134302328|ref|YP_001122297.1| alanine racemase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|172044165|sp|A4IZ25|ALR_FRATW RecName: Full=Alanine racemase
 gi|134050105|gb|ABO47176.1| alanine racemase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 365

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 173/379 (45%), Gaps = 46/379 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  + DFF  +V   
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHD--LVDFF--AVANS 59

Query: 69  VKLRLYTPQARIFVL-YGI--HPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSHP 123
           ++    T  A+  VL +G+  +   EK+I +   + +     + +L   +K +   V   
Sbjct: 60  LEAFRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKV--- 116

Query: 124 YA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           YA + ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF
Sbjct: 117 YAHININTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRF 176

Query: 183 RTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHPM 232
            +++   KG+       L++S G L      + + RPGI  YG       D+ I +  P+
Sbjct: 177 DSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPI 236

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             +++   +II +++   GE V Y    +      +AV  IGY DG+P            
Sbjct: 237 ARLLSKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE---------- 283

Query: 293 SVFLGGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD---- 345
              LG +GF  I   M P+ G+++MD +T+    +   ++VGD +++     +  +    
Sbjct: 284 ---LGDRGFVNINDVMYPMAGRMSMDSLTVSLGINEYDVKVGDTVELISAIPRNRNSAFS 340

Query: 346 VALASGTTNYDLLVRIGTR 364
           +A  + T  YD++  +  R
Sbjct: 341 IAKQTNTIEYDIMSTLNDR 359


>gi|228919176|ref|ZP_04082550.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228840487|gb|EEM85754.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 389

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 167/390 (42%), Gaps = 38/390 (9%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL G  P ++  +   N + +  +V Q  +  + +
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVL-GPSPPRDVNVAAENDVAL--TVFQKEWVDEAI 117

Query: 117 SCGVSHP---YALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSS 172
                 P   + +  D+G  R+G+  ++ L +F  +       +L  + +H A +D+  +
Sbjct: 118 ELWDGSPVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATSDEVET 177

Query: 173 HVNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q   F   +S  K  G++  L   A+S+  L      F   R GI++YG +  + 
Sbjct: 178 SYFDKQYNTFLEQLSWLKEFGVDPKLVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVE 237

Query: 228 KS----HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                   ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L
Sbjct: 238 IRPFLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRL 297

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
            G +              I G  VPI+G++TMD  M  +     + +G  + + G     
Sbjct: 298 QGFEV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDE 343

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I   +VA  SGT NY+++  I  R  + +
Sbjct: 344 YISATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|33592350|ref|NP_879994.1| alanine racemase, catabolic [Bordetella pertussis Tohama I]
 gi|33571995|emb|CAE41517.1| alanine racemase, catabolic [Bordetella pertussis Tohama I]
 gi|332381767|gb|AEE66614.1| alanine racemase, catabolic [Bordetella pertussis CS]
          Length = 375

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 156/351 (44%), Gaps = 43/351 (12%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AV+K NAYG G E+       A  Q   +  ++E V+ R       I +L G   P   +
Sbjct: 41  AVIKANAYGHGIEQAVAGFSAA--QGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLE 98

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV--DTGFNRLGLSLQEALDFTHNSF 150
           I+   +L   + +  Q   +  L    +S    + V  ++G NRLG     A D   +++
Sbjct: 99  IVDRYHLATTVHTREQ---FDMLAHARLSRRVDIMVKLNSGMNRLGF----APDAYGSAY 151

Query: 151 NK--KLGQLSLI-----ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL 203
            +  +L +  ++     ++H ACAD P       Q+  F    +H  G   S+ +S+  L
Sbjct: 152 ARAQQLHEYGVVGGIGKMTHFACADGPQGVTQ--QMNVFNGATAHLAG-ATSVCNSAATL 208

Query: 204 ------LGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELV 254
                 +G +      RPGI LYG +   D    +  +   +T  + +I I+   AG  V
Sbjct: 209 RYADLAVGHDGQTHWVRPGICLYGASPFADAQAGAFGLIPAMTLRSELIAIQDIPAGAAV 268

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            YG   +  R   I V A GYADGYP         H+ +   G    + G    ++G+++
Sbjct: 269 GYGAIFRADRPMRIGVVACGYADGYP--------RHAGT---GTPLTVGGVRTRLVGRVS 317

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTR 364
           MDM M D+    +  +G  + ++G D   +D+VA A+GT  Y+LL  +  R
Sbjct: 318 MDMLMVDLDPVPAAGIGTPVVLWGEDGPSVDEVAEAAGTIGYELLCALAPR 368


>gi|84497889|ref|ZP_00996686.1| putative alanine racemase [Janibacter sp. HTCC2649]
 gi|84381389|gb|EAP97272.1| putative alanine racemase [Janibacter sp. HTCC2649]
          Length = 391

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 159/382 (41%), Gaps = 36/382 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + IDL A+ +N   ++  S  A   AVVK N YG G    A A    G     V    E 
Sbjct: 20  VTIDLAAIADNVRELDRRSPGAEVMAVVKANGYGHGLVPSARAAVAGGATWLAVAQFNEA 79

Query: 69  VKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           + LR   + TP        G+  G      D ++   +S+   L                
Sbjct: 80  LDLRAAGVTTPLLTWLYAPGVDFGAA---IDADIDISVSAPWALDAVVAAARARGRAARI 136

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL----IISHLACADDPSSHVNSVQLE 180
            ++VDTG  R G   Q   D    +    + + ++    + SH A AD P       Q +
Sbjct: 137 HVKVDTGLGRNGALGQGWTDLIA-ALGPVVAEGAVEVIGVWSHFARADAPQDPTVLGQRD 195

Query: 181 RFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---- 231
           RF       +  GI   L   A+S+  L  PN HF L RPG+++YG +   +   P    
Sbjct: 196 RFVEAAEELERAGIRPQLRHLANSAATLTNPNAHFDLVRPGLAVYGLSPVPDLGSPQDFG 255

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +   AR+ L+++A  G+ VSYG       D+++ +  IGYADG P         H+
Sbjct: 256 LREAMRVTARLALVKEASTGQGVSYGHIYTTPEDTVLGLVPIGYADGIP--------RHA 307

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVA 347
            +V   G   +    + + G++ MD  + D+    +   GD + I G  +  +    D A
Sbjct: 308 GNV---GPVKVGDRRLTVAGRVCMDQFVLDLGAGYAGGAGDEVVILGRGVDDEPTAQDWA 364

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
            A  T NY+++ R+  R  + +
Sbjct: 365 TAIDTINYEIVTRMSDRLPRVF 386


>gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 836

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 167/381 (43%), Gaps = 40/381 (10%)

Query: 11  IDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L  +++N + +   L    R   +VK  AYG    +IA  L +  +    V+ V+EG+
Sbjct: 469 INLATIESNLNLIRQKLPSQTRLMVMVKALAYGTEDIQIAKFLASCQIDILGVSYVDEGI 528

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQV 128
            L+    +  IF L    P +   I    +   +     +   +K  S         L +
Sbjct: 529 ALKRAGVKQAIFALSAT-PAEITKILRWEIEVGVGDQAFIQALAKEASIQQKEIKVHLHI 587

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD----DPSSHVNSVQLERFRT 184
           DTG +R G   +EAL            +L  +++H ACA+    DP +H    Q+ +F  
Sbjct: 588 DTGMSRFGCRPEEALPLAQMIQEAPFLKLEGVMTHFACAEDLEQDPFTH---QQINKFDA 644

Query: 185 LISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237
            ++  + +  S+     A+SS         + + R G+++YG   +  +  S  ++  ++
Sbjct: 645 AVAEIQALGISIPWKHAANSSAATRFHLPQYNMVRIGLAVYGLFSSPIVRDSLKLKLALS 704

Query: 238 AEARIILIRKALAGELVSYGG----QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +RI+ I     GE +SYG     +K L R   IAV  IGY DG     SG        
Sbjct: 705 LLSRIVGINVCKQGETISYGRNYTVEKPLQR---IAVLPIGYFDGLHRHYSG-------- 753

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVAL 348
               G   + G   P++G I MD  M DITD  + +VGD + IFG D     +  +D+A+
Sbjct: 754 ---KGWVLVHGQKAPMIGNICMDFMMIDITDIPTAQVGDTVLIFGEDEHRNFLSPEDLAM 810

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              +  ++L+  IG R  + +
Sbjct: 811 RGESIVHELVTCIGPRIPRIF 831


>gi|309789197|ref|ZP_07683790.1| alanine racemase [Shigella dysenteriae 1617]
 gi|308922951|gb|EFP68465.1| alanine racemase [Shigella dysenteriae 1617]
          Length = 200

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 26/212 (12%)

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGIS 218
           +SH A A+ P     S  + R        +G+E   SL++S+  L  P  HF   R GI 
Sbjct: 1   MSHFAEAEHPDG--ISGAMARIE---QAAEGLECRRSLSNSAATLWHPEAHFDWVRLGII 55

Query: 219 LYGGT------DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAA 272
           LYG +      D  N    ++ V+T  + II ++   AGE V YGG+     +  I + A
Sbjct: 56  LYGASPSGQWRDIANTG--LRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVA 113

Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
            GYADGY        S H+P+   G    + G     +G ++MDM   D+T      +G 
Sbjct: 114 AGYADGY--------SRHAPT---GTPVLVDGVRTMTVGTVSMDMMAVDLTPCPQAGIGT 162

Query: 333 YIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            ++++G +IK+DDVA A+GT  Y+L+  +  R
Sbjct: 163 PVELWGKEIKIDDVAAAAGTVGYELMCALALR 194


>gi|229074289|ref|ZP_04207333.1| Alanine racemase [Bacillus cereus Rock4-18]
 gi|228708841|gb|EEL60970.1| Alanine racemase [Bacillus cereus Rock4-18]
          Length = 389

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEASFYRDTWVEVDLDAIYNNIKHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDINVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVDGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|324324251|gb|ADY19511.1| alanine racemase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 389

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 161/388 (41%), Gaps = 34/388 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +       AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSGVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q   F   +S  K  G+       A+S+  L      F   R GI++YG +  + +  
Sbjct: 181 DKQYNTFLEQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSV-EIR 239

Query: 231 P-----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           P     ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G
Sbjct: 240 PFLPLKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQG 299

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
            +              + G  VPI+G++TMD  M  +     + +G  + + G      I
Sbjct: 300 FEV------------LVNGKRVPIVGRVTMDQFMIHL--PCKVPLGTKVTLIGRQGDEYI 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
              +VA  SGT NY+++  I  R  + +
Sbjct: 346 SATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|308234831|ref|ZP_07665568.1| alanine racemase [Gardnerella vaginalis ATCC 14018]
          Length = 356

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 41/289 (14%)

Query: 117 SCGVSHPYALQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADD 169
           S G +    ++VDTGF R G +       L++  +++     + +GQ S    HLA AD 
Sbjct: 52  SVGAAARIHVKVDTGFGRNGFTPAGFSDALEKLSEYSSQGLIEVIGQWS----HLAVADC 107

Query: 170 PS--SHVNSV--QLERFRTLISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P     V+S   Q+E+F          G+E     LA+++  L  P   F+L RPGI LY
Sbjct: 108 PDVPEFVSSTDRQIEQFHDFTRRMCEAGLEPKIRHLANTAATLNRPEIRFELVRPGIGLY 167

Query: 221 GGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G        + +++ ++  +T +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 168 GYEPDPVMGVPQTYDLRPAMTLQAQLGTVKSVEAGHGISYGRTYLTPDNTSTAIVPLGYA 227

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIK------GYMVPILGKITMDMTMFDITDS---LS 327
           DG     SG D + S  V   G G ++        ++ + G++ MD  + D+  S   L 
Sbjct: 228 DGILRAASGYDMQGSRHVNKPG-GPVRVETNNGARILHVSGRVCMDQFIVDLKGSAKELG 286

Query: 328 IEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++ GD +++FGP       +   DD A A+GT +Y+++  IG R  + Y
Sbjct: 287 VKEGDTVRLFGPGRGIEYAEPTADDWAAAAGTISYEIMTGIGPRVPRLY 335


>gi|116493287|ref|YP_805022.1| alanine racemase [Pediococcus pentosaceus ATCC 25745]
 gi|122265249|sp|Q03DZ2|ALR_PEDPA RecName: Full=Alanine racemase
 gi|116103437|gb|ABJ68580.1| alanine racemase [Pediococcus pentosaceus ATCC 25745]
          Length = 374

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 159/381 (41%), Gaps = 40/381 (10%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +L I+  A++NN  + ++ L G++   AVVK N YG G  + A     AG   F V  ++
Sbjct: 10  KLVINAEAIRNNVKNEISRLDGHSELFAVVKANGYGHGIVETAQFTKQAGATGFCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E + LR       I VL        K+  + ++   +     L   +++++     P   
Sbjct: 70  EALALRDAGLTETILVLGITDVKYAKLAAENDISLTVGDQAWLDEATQILN---QKPLKV 126

Query: 126 -LQVDTGFNRLGL----SLQEALDFTHNS--FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L +DTG  R+G     S ++A D+   S  FN        + +H A AD+  +   ++Q
Sbjct: 127 HLGIDTGMGRIGFQDGASFKKAADYLEQSQQFN-----FEGVFTHFATADEKDTTYFNLQ 181

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
           +ERF   IS    +     +++++  L     +  + R G+ +YG       +     +Q
Sbjct: 182 VERFNHFISQLTRRPRYVHVSNTATSLWHAACNGNMIRFGVGIYGMNPSGKTLESPFDLQ 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ +   +    G  +SYG       D  I    IGYADGY   L G        
Sbjct: 242 PAMSLESELSFSKLVQKGRSISYGATYTAEEDEWIGTIPIGYADGYERRLQGFHV----- 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   I G    I+G+I MD  M  +  S    VG  + + G      I + D+A  
Sbjct: 297 -------LIDGQFCEIVGRICMDQMMVRLPKSYP--VGTKVILAGKSGEKSITMTDIAEY 347

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +GT NY++      R  + YT
Sbjct: 348 AGTINYEITCGFTQRLPRIYT 368


>gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
 gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
          Length = 843

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 179/378 (47%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL NN  S  AL S   R   + K   YG+G  ++A AL    +    V   +E
Sbjct: 479 LEIDLEALVNNLKSYKALLSPETRIIVMAKAQGYGIGAYELAKALEQQDLAALAVALADE 538

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH-P 123
           G +LR    +  +  +  ++P  E  +++  + L P I +   L  +++ +   G+SH P
Sbjct: 539 GKELR---SKGILLPIIVMNPEVEAFEVMTQSRLEPEIYNERILREFARHVERQGLSHYP 595

Query: 124 YALQVDTGFNRLGLSLQEA-LDFTHNSFNK--KLGQLSLIISHLACADDPS-SHVNSVQL 179
             +++DTG +R G +   A L+    + ++   L ++  I +HLA AD+P  S     Q 
Sbjct: 596 VHIELDTGMHRTGFTPDRATLEHLAQTLHEVEPLIRVQSIFTHLAAADEPMMSDFTEQQF 655

Query: 180 ERFRT----LISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
             +      L S   Y+ +   + +++G+    ++H+ + R G+ LYG +     S  ++
Sbjct: 656 ALYDEGADYLTSQLSYRPLR-HVQNTAGMERYNHHHYDMARLGVGLYGIS--ATGSLTLE 712

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V      ++ I+    GE + YG + ++     I +  IGYADGY       D   S  
Sbjct: 713 PVAKLRTTLLQIKTIPDGETIGYGRRGQVAPGGQIGIIPIGYADGY-------DRRFSCG 765

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFG-PDIKLDDVALASG 351
           V   G   I   + PI+G + MD  M D+T     +  GD + IFG P +++ D+A   G
Sbjct: 766 V---GSVMIHDTLCPIVGNVCMDTCMVDLTALQGKVAEGDEVIIFGVPGLQVSDLAERIG 822

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+++ ++  R  + Y
Sbjct: 823 TIPYEVISKLSPRIKRTY 840


>gi|238854498|ref|ZP_04644836.1| alanine racemase [Lactobacillus jensenii 269-3]
 gi|260664819|ref|ZP_05865670.1| alanine racemase [Lactobacillus jensenii SJ-7A-US]
 gi|313472625|ref|ZP_07813114.1| alanine racemase [Lactobacillus jensenii 1153]
 gi|238832851|gb|EEQ25150.1| alanine racemase [Lactobacillus jensenii 269-3]
 gi|239529422|gb|EEQ68423.1| alanine racemase [Lactobacillus jensenii 1153]
 gi|260561302|gb|EEX27275.1| alanine racemase [Lactobacillus jensenii SJ-7A-US]
          Length = 375

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 158/382 (41%), Gaps = 38/382 (9%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +++DL A+K N     A L    +  AVVK NAYG G  K+A      G + F V  ++
Sbjct: 10  EVEVDLLAIKKNLQEEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGAEGFCVAVLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSH 122
           E  +LR  +    I VL G+ P  E  I   + I +  + P L +       L    +  
Sbjct: 70  EAFELRDSSIVDPILVL-GVTPANEACIAAAHNISL--TAPSLEWLEAADKALAKKDMVL 126

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
              L +D+G  R+G S  +      N F +      +  + +H A AD   SH    Q++
Sbjct: 127 KIHLAIDSGMGRIGFSEDQEF-IAANEFLRNSTHFIVEGMFTHFASADSRDSHYFDYQVK 185

Query: 181 RFRTL--ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP------- 231
           RF  L  I   K     +A+++  +   N H  + R GI LYG     N + P       
Sbjct: 186 RFNHLKNILSIKPKWIHVANTASSIFDKNIHSDIVRFGIGLYGLNPSSNPASPDLESEIN 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  ++K  +G  + YG       D  I    +GYADG    LSG      
Sbjct: 246 LKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGVIRKLSGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVA 347
                  K  +  +  PI+G+I MD  M  + + +   VG  + I+  + +    +   A
Sbjct: 301 -------KIKVGAHYCPIVGRICMDQLMVLLPEKMP--VGTKVVIYSNNPEDPNFIKKAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y+L   +  R  + Y
Sbjct: 352 DYVDTIHYELACLLSDRLPRIY 373


>gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565]
 gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565]
          Length = 852

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 159/377 (42%), Gaps = 36/377 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV--VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++  +  T  +  VK +AYG G  +IA  L    V    V   +
Sbjct: 493 LEVNLGAMVENLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKTLQEHHVDYLAVAVAD 552

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH-PY 124
           EG +LR     + I ++        K +FD  L P + +   L    K     G+++ P 
Sbjct: 553 EGSELRKAGITSSIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 611

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF- 182
            +++DTG +RLG   ++         N+       + SH   +D P        Q+E F 
Sbjct: 612 HVKLDTGMHRLGFEAEDIPLLIRRLKNQNAVIPRSVFSHFVGSDSPQFDAFTRQQIELFE 671

Query: 183 ------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
                 +   SH   I   + +++GI   P   F + R GI LYG    I+ S  +  V 
Sbjct: 672 KGSQELQAAFSH--KILRHICNTAGIERFPGAQFDMVRLGIGLYG-VSPIDNS-IIHNVS 727

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 728 TLKTTILQIRDVPEEDTVGYSRMGHLIRPSRIAAIPIGYADGLNRHL------------- 774

Query: 297 GGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            G+G     + G   P +G I MD+ M D+TD +    GD   IFG D+ +  ++    T
Sbjct: 775 -GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFGDDLPITVLSDKLDT 832

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I TR  + Y
Sbjct: 833 IPYEVLTSISTRVKRIY 849


>gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108]
 gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108]
          Length = 831

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 163/389 (41%), Gaps = 46/389 (11%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           E L  K+  T L+ N  +M A        L    +   +VK +AYG G  +IA  L    
Sbjct: 462 EVLEKKVHETILEVNLGAMIANLNYYRGKLKPETKIVCMVKASAYGAGSYEIAKTLQEHR 521

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQL-TFYS 113
           V    V   +EG +LR     A I ++   +P     K +FD  L P + S   L     
Sbjct: 522 VDYLAVAVADEGSELRKAGITASIIIM---NPEMTAFKTMFDYKLEPEVYSFGLLEALIK 578

Query: 114 KLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS- 171
           +    G+++ P  +++DTG +RLG + ++          +       + SH   +D P  
Sbjct: 579 EAEKEGITNFPVHVKLDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDSPQF 638

Query: 172 ---SHVNSVQLER----FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
              +    V  E+     +   +H   I   + +S+GI   P   F + R G+ LYG   
Sbjct: 639 DAFTRRQIVMFEKASVELQEAFAH--KILRHICNSAGIERFPGAQFDMVRLGLGLYG-IS 695

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            I+ S  +  V T +  I+ IR   A + V Y  +  L R S IA   IGYADG    L 
Sbjct: 696 PIDNS-ILNNVSTLKTTILQIRDVPAEDTVGYSRKGHLNRPSRIAAIPIGYADGLNRHL- 753

Query: 285 GLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                        G G     + G     +G I MD+ M D+TD +  + GD ++IFG  
Sbjct: 754 -------------GNGHAYCLVNGCKASYVGNICMDVCMIDVTD-IDCKEGDTVEIFGDH 799

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +  ++    T  Y++L  + TR  + Y
Sbjct: 800 LPITVLSDVLDTIPYEVLTSVSTRVKRIY 828


>gi|20137236|sp|Q9FCV2|ALR_LACRE RecName: Full=Alanine racemase
 gi|9798537|emb|CAC03497.1| alanine racemase [Lactobacillus reuteri]
          Length = 375

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 153/375 (40%), Gaps = 29/375 (7%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL +D  A++ N    +  L   +   AVVK N YG G   +A     AG   F V  ++
Sbjct: 10  RLVVDAAAIRQNVKKEIERLDPQSELFAVVKANGYGHGLIPVARYTEQAGATGFCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E + LR       I VL   +     +  + N+   +  V  LT  +  ++    HP   
Sbjct: 70  EALTLREAGFAEPILVLGITNVKWAALAAEKNVSLTVGDVEWLTKAAPQLT--AEHPLKV 127

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L +DTG  R+G    + L+       N        + +H A AD+      ++Q++RF 
Sbjct: 128 HLALDTGMGRIGFQESDGLNQAAELLTNDPRFVFEGVFTHFATADEKDPTYFNLQVDRFH 187

Query: 184 TLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTA 238
            L+     K     +++++  L     +  L R G+ +YG       +   + +Q  +T 
Sbjct: 188 KLVDTLPEKPRYVHVSNTATSLWHAACNGNLIRFGVGIYGMNPSGTVLEPPYDLQPAMTL 247

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+++   +    G  VSYG    + +D  I    IGYADGYP  L G             
Sbjct: 248 ESQLSFSKLLKKGRSVSYGATYTVEQDEWIGTVPIGYADGYPRCLQGFHV---------- 297

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDS----LSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              + G+   I+G++ MD  M  +        S+ +    Q  G  I + D+A  +GT N
Sbjct: 298 --LVDGHFCEIVGRVCMDQLMIRLPHEYPAGTSVILAGKSQ--GKSISMTDIADYAGTIN 353

Query: 355 YDLLVRIGTRYAKFY 369
           Y++      R  + Y
Sbjct: 354 YEITCGFTERIPRVY 368


>gi|89256641|ref|YP_514003.1| alanine racemase [Francisella tularensis subsp. holarctica LVS]
 gi|167011039|ref|ZP_02275970.1| alanine racemase [Francisella tularensis subsp. holarctica FSC200]
 gi|254367956|ref|ZP_04983976.1| alanine racemase [Francisella tularensis subsp. holarctica 257]
 gi|122500527|sp|Q2A2P9|ALR_FRATH RecName: Full=Alanine racemase
 gi|89144472|emb|CAJ79777.1| alanine racemase [Francisella tularensis subsp. holarctica LVS]
 gi|134253766|gb|EBA52860.1| alanine racemase [Francisella tularensis subsp. holarctica 257]
          Length = 365

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 170/380 (44%), Gaps = 48/380 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  + DFF  +V   
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHD--LVDFF--AVANS 59

Query: 69  VKLRLYTPQARIFVL-YGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS---H 122
           ++    T  A+  VL +G+  +   EK+I +     +  S+    +  KL          
Sbjct: 60  LEAFRVTAVAKNPVLVFGVIYYEYIEKMISEN----IRVSIQDYEYIEKLEQIAKELDKK 115

Query: 123 PYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            YA + ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  R
Sbjct: 116 VYAHININTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNR 175

Query: 182 FRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHP 231
           F +++   KG+       L++S G L      + + RPGI  YG       D+ I +  P
Sbjct: 176 FDSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKP 235

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  +++   +II +++   GE V Y    +      +AV  IGY DG+P           
Sbjct: 236 IARLLSKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE--------- 283

Query: 292 PSVFLGGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD--- 345
               LG +GF  I   M P+ G+++MD +T+    +   ++VGD +++     +  +   
Sbjct: 284 ----LGDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAF 339

Query: 346 -VALASGTTNYDLLVRIGTR 364
            +A  + T  YD++  +  R
Sbjct: 340 SIAKQTNTIEYDIMSTLNDR 359


>gi|332530410|ref|ZP_08406354.1| alanine racemase [Hylemonella gracilis ATCC 19624]
 gi|332040122|gb|EGI76504.1| alanine racemase [Hylemonella gracilis ATCC 19624]
          Length = 377

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 166/383 (43%), Gaps = 58/383 (15%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           AL++N     A + +A+  AVVK NAYG G E++   L   G   F +  + E  ++R  
Sbjct: 13  ALRHNLARARAAAPDAKVWAVVKANAYGHGIERVYEGLR--GADGFALLDLGEAERVRAL 70

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
             +  I +L G+  P   ++     L  V+    Q+ + + +      H   L++++G N
Sbjct: 71  GWRGPILLLEGVFDPRDLELCSRLGLWHVVHETRQIDWLA-MHKTHAPHRVFLKMNSGMN 129

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLS--------LIISHLACADDPSSHVNSVQLERFRTL 185
           RLG        F   +F     +L          +I+H + AD P    +  QL  F   
Sbjct: 130 RLG--------FRPEAFRAAWARLDALPQVEEITLITHFSDADGPRGIAS--QLALFNAT 179

Query: 186 ISHYKGIEASLASSSGILL-----------GPNYHFQLTRPGISLYGGTD---KINKSH- 230
                G E SLA+S+  L                     RPGI++YG      + + +H 
Sbjct: 180 TQDLPG-ERSLANSAATLRHMGAQGRTSSDAEGLRSDWVRPGIAVYGSAPDYPEHDAAHW 238

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +   +T  +RII +++  AG+ V YG      +   + V A GYADGY           
Sbjct: 239 DLHPTMTLRSRIIGVQQLQAGDTVGYGSAFTAQQPMRVGVVACGYADGY--------MRV 290

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD----SLSIEVGDYIQIFGPD-----I 341
           +P+   G    + G    ++G+++MDM   D+       L+ +VG  + ++G       +
Sbjct: 291 APT---GTPVLVDGVRTRLVGRVSMDMLTVDLEPVRQAGLAADVGSEVTLWGQAGNGAVL 347

Query: 342 KLDDVALASGTTNYDLLVRIGTR 364
            +D+VA A+GT +Y+L+  +  R
Sbjct: 348 DIDEVARAAGTLSYELMCALALR 370


>gi|75760683|ref|ZP_00740709.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228898981|ref|ZP_04063258.1| Alanine racemase [Bacillus thuringiensis IBL 4222]
 gi|74491833|gb|EAO55023.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228860655|gb|EEN05038.1| Alanine racemase [Bacillus thuringiensis IBL 4222]
          Length = 389

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLRSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|171741011|ref|ZP_02916818.1| hypothetical protein BIFDEN_00077 [Bifidobacterium dentium ATCC
           27678]
 gi|283455601|ref|YP_003360165.1| alanine racemase [Bifidobacterium dentium Bd1]
 gi|171276625|gb|EDT44286.1| hypothetical protein BIFDEN_00077 [Bifidobacterium dentium ATCC
           27678]
 gi|283102235|gb|ADB09341.1| alr Alanine racemase [Bifidobacterium dentium Bd1]
          Length = 452

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 127/283 (44%), Gaps = 47/283 (16%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADDPS--S 172
           ++VD+GF R G        FT   F+  L +L  ++           SHLA AD P    
Sbjct: 157 VKVDSGFGRNG--------FTPAGFDAALAKLVPLVKEGVLHVVGQWSHLAVADAPDVPE 208

Query: 173 HVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
            V S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LYG    
Sbjct: 209 FVASTDRQIENFKDFTRRMEAAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLYGYEAD 268

Query: 226 INKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                P    ++  +T +A++  ++   AG  +SYG       D+  A+  IGYADG   
Sbjct: 269 PAMGTPGTYGLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPTDTSTAIVPIGYADGIHR 328

Query: 282 TLSGLDSEHSPSVF-LGGKGFIKGYMVPIL----GKITMDMTMFDI---TDSLSIEVGDY 333
           + SG D E +  V   GG   +     P L    G++ MD  + D+    D+L I  GD 
Sbjct: 329 SASGFDMEGAKHVVKAGGPVRVMTAEGPRLYRVSGRVCMDQFILDLHGSADALGIHEGDT 388

Query: 334 IQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++FGP       +   DD   A+ T +Y++   +  R  + Y
Sbjct: 389 VELFGPGRGEDYAEPTADDWGRAADTISYEIFTCLRNRIPRLY 431


>gi|223939404|ref|ZP_03631282.1| alanine racemase [bacterium Ellin514]
 gi|223891896|gb|EEF58379.1| alanine racemase [bacterium Ellin514]
          Length = 400

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 149/354 (42%), Gaps = 41/354 (11%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    L+I   A ++N   M  L G N +  AV+K +AYG G   + PA+  A +    V
Sbjct: 32  NAHAWLEISQPAFEHNLAEMKKLVGPNTQVCAVMKADAYGHGIAMLIPAISRAAIPYVGV 91

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           TS EE  K R    + ++  L    P + +     ++  ++ S   LT    +      H
Sbjct: 92  TSNEEAAKARAAGYKGKLMRLRTATPAEIEAALPYDIEELLGS---LTLAEDVSVLAHRH 148

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK------KLGQLSL--IISHLACADDPSSHV 174
              L+     N  G+S +  ++   ++         +L  L +  I++H      P   V
Sbjct: 149 HIILRYHLALNSAGMS-RNGIELKADAGKADALALLRLPNLRIVGIMTHF-----PVEEV 202

Query: 175 NSVQ--LERFRT---LISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTD 224
             V+  L  F T    + H   ++ S      A+S   L  P     L RPG +LYG  D
Sbjct: 203 ADVRAGLAAFNTESAWVIHEGHLDRSKLLLHTANSFATLEVPEARLDLVRPGGALYG--D 260

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            +      Q V++ ++R+  I     G  + Y     LTRDS +A   +GY+DGY    S
Sbjct: 261 TVPSHTEYQRVLSFKSRVAAINAYPKGNTICYDRTFTLTRDSRLANIPVGYSDGYRRVFS 320

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                            I G+  PI+G++TM+  M D+TD   ++ GD + +FG
Sbjct: 321 N-----------KANVLIHGHRCPIVGRVTMNTVMVDVTDLADVQKGDEVVLFG 363


>gi|218895364|ref|YP_002443775.1| alanine racemase [Bacillus cereus G9842]
 gi|228963335|ref|ZP_04124500.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218545448|gb|ACK97842.1| alanine racemase [Bacillus cereus G9842]
 gi|228796363|gb|EEM43806.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 389

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLRSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|15672826|ref|NP_267000.1| alanine racemase [Lactococcus lactis subsp. lactis Il1403]
 gi|281491333|ref|YP_003353313.1| alanine racemase [Lactococcus lactis subsp. lactis KF147]
 gi|20137230|sp|Q9CH94|ALR_LACLA RecName: Full=Alanine racemase
 gi|12723770|gb|AAK04942.1|AE006318_5 alanine racemase [Lactococcus lactis subsp. lactis Il1403]
 gi|281375074|gb|ADA64592.1| Alanine racemase [Lactococcus lactis subsp. lactis KF147]
          Length = 367

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 156/376 (41%), Gaps = 39/376 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL A++NN       +  NA     VK +AYG G  +++ A+ +  V  F V++++E +
Sbjct: 13  VDLKAIRNNIEKFKKHIHPNAEIWPAVKADAYGHGSVEVSKAVSDL-VGGFCVSNLDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR +     I VL GI P    I    N+     S+  L    +  +        + VD
Sbjct: 72  ELRNHLVTKPILVLSGIVPEDVDIAAALNISLTAPSLEWLKLVVQEEAELSDLKIHIGVD 131

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G  R+G+   E  +      +K       I +H A AD            +F+   + +
Sbjct: 132 SGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADD-------TKFKDQQARF 184

Query: 190 KGIEASLASSSGILLGPN-----YHFQ----LTRPGISLYG---GTDKINKSHPMQTVVT 237
             I A L+     +   N     +H +    + R GIS+YG       +     ++  ++
Sbjct: 185 NKIMAGLSRKPKFVHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEIEPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  I+K  AGE V YG   + + ++ I    IGYADG+   + G            
Sbjct: 245 LVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            K  + G    I+G++ MD  M  +  S  +  G  + + G D    I   DVA   GT 
Sbjct: 294 -KVLVNGEFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKTNEITTTDVADWRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIKRIY 366


>gi|94994987|ref|YP_603085.1| alanine racemase [Streptococcus pyogenes MGAS10750]
 gi|166969432|sp|Q1J545|ALR_STRPF RecName: Full=Alanine racemase
 gi|94548495|gb|ABF38541.1| Alanine racemase [Streptococcus pyogenes MGAS10750]
          Length = 366

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 165/373 (44%), Gaps = 31/373 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S+   +    +T AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + K+     +   ++S+  L    +           +++
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELKLAITRQVTVTVASLEWLAMAKQEWPDLKGLKVHIKI 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL     +D           ++  I +H A AD+      + QL+ F+ LI+ 
Sbjct: 131 DSGMGRIGLRSVTEVDNLIAGLKSMGAEVEGIFTHFATADEADDTKFNQQLQFFKKLIAG 190

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEA 240
            +     + AS +++S  +   +  F   R GI  YG    G+D ++   P+Q  ++ E+
Sbjct: 191 LEDKPRLVHASNSATS--IWHSDTIFNAVRLGIVSYGLNPSGSD-LSLPFPLQEALSLES 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ ++   AG+ V YG      +   +    IGYADG+   + G               
Sbjct: 248 SLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFSV------------ 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
            + G    I+G+++MD     +  +  +  G  + + G     +I   D+A    T NY+
Sbjct: 296 LVDGQFCEIIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTINYE 353

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 354 VLCLLSDRIPRIY 366


>gi|33602247|ref|NP_889807.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50]
 gi|33576686|emb|CAE33763.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50]
          Length = 375

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 156/351 (44%), Gaps = 43/351 (12%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AV+K NAYG G E+       A  Q   +  ++E V+ R       I +L G   P   +
Sbjct: 41  AVIKANAYGHGIEQAVAGFSAA--QGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLE 98

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV--DTGFNRLGLSLQEALDFTHNSF 150
           I+   +L   + +  Q   +  L    +S    + V  ++G NRLG     A D   +++
Sbjct: 99  IVDRYHLATTVHTREQ---FDMLAHARLSRRVDIMVKLNSGMNRLGF----APDAYGSAY 151

Query: 151 NK--KLGQLSLI-----ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL 203
            +  +L +  ++     ++H ACAD P       Q+  F    +H  G   S+ +S+  L
Sbjct: 152 ARAQQLHEYGVVGGIGKMTHFACADGPQGVTQ--QMNVFNGATAHLAG-ATSVCNSAATL 208

Query: 204 ------LGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELV 254
                 +G +      RPGI LYG +   D    +  +   +T  + +I ++   AG  V
Sbjct: 209 RYADLAVGHDGQTHWVRPGICLYGASPFADAQAGAFGLIPAMTLRSELIAVQDIPAGAAV 268

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            YG   +  R   I V A GYADGYP         H+ +   G    + G    ++G+++
Sbjct: 269 GYGAIFRADRPMRIGVVACGYADGYP--------RHAGT---GTPLTVGGVRTRLVGRVS 317

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTR 364
           MDM M D+    +  +G  + ++G D   +D+VA A+GT  Y+LL  +  R
Sbjct: 318 MDMLMVDLDPVPAAGIGTPVVLWGEDGPSVDEVAEAAGTIGYELLCALAPR 368


>gi|206977042|ref|ZP_03237942.1| alanine racemase [Bacillus cereus H3081.97]
 gi|206744691|gb|EDZ56098.1| alanine racemase [Bacillus cereus H3081.97]
          Length = 389

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 162/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AI YADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIAYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +      V + GK       VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 E------VLVNGK------RVPIVGRVTMDQFMIHL--PCKVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
 gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
          Length = 846

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 168/391 (42%), Gaps = 47/391 (12%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYN 54
           +E L LK+  T L+ N  +M A   + R+           +VK +AYG G  +IA +L  
Sbjct: 475 SEALELKVHETILEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQE 534

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
             V    V   +EG +LR     A I ++        K +FD  L P + +   L    K
Sbjct: 535 HHVDYLAVAVADEGSELRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIK 593

Query: 115 LMSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                G+++ P  +++DTG +RLG ++++         N+       + SH   +D  SS
Sbjct: 594 AAEKEGITNFPIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSD--SS 651

Query: 173 HVNSV---QLERF-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
             ++    Q+E F       +   SH   I   + +++GI   P   + + R GI LYG 
Sbjct: 652 QFDAFTRGQIELFEKGSQELQAAFSH--KILRHICNTAGIERFPEAQYDMVRLGIGLYG- 708

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
              I+ S  +  V T +  I+ IR     + V Y     L R S IA   IGYADG    
Sbjct: 709 VSPIDNS-IIHNVSTLKTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRH 767

Query: 283 LSGLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           L              G+G     + G   P +G I MD+ M D+TD +    GD   IFG
Sbjct: 768 L--------------GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFG 812

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D+ +  ++    T  Y++L  I TR  + Y
Sbjct: 813 DDLPITVLSDKLKTIPYEVLTSISTRVKRVY 843


>gi|19746744|ref|NP_607880.1| alanine racemase [Streptococcus pyogenes MGAS8232]
 gi|50914870|ref|YP_060842.1| alanine racemase [Streptococcus pyogenes MGAS10394]
 gi|23813643|sp|Q8NZK4|ALR_STRP8 RecName: Full=Alanine racemase
 gi|73921670|sp|Q5XAA4|ALR_STRP6 RecName: Full=Alanine racemase
 gi|19748973|gb|AAL98379.1| putative alanine racemase [Streptococcus pyogenes MGAS8232]
 gi|50903944|gb|AAT87659.1| Alanine racemase [Streptococcus pyogenes MGAS10394]
          Length = 366

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 165/373 (44%), Gaps = 31/373 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S+   +    +T AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + K+     +   ++S+  L    +           +++
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELKLAITRQVTVTVASLEWLAMAKQEWPDLKGLKVHIKI 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL     +D            +  I +H A AD+      + QL+ F+ LI+ 
Sbjct: 131 DSGMGRIGLRSVTEVDNLIAGLKSMGADVEGIFTHFATADEADDTKFNQQLQFFKKLIAG 190

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEA 240
            +     + AS +++S  +   +  F   R GI  YG    G+D ++   P+Q  ++ E+
Sbjct: 191 LEDKPRLVHASNSATS--IWHSDTIFNAVRLGIVSYGLNPSGSD-LSLPFPLQEALSLES 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ ++   AG+ V YG      +   +    IGYADG+   + G               
Sbjct: 248 SLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFSV------------ 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
            + G    I+G+++MD     I  S +  +G  + + G     +I   D+A    T NY+
Sbjct: 296 LVDGQFCEIIGRVSMD--QLTIRLSKAYPLGTKVTLIGSNQQKNISTTDIANYRNTINYE 353

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 354 VLCLLSDRIPRIY 366


>gi|33596460|ref|NP_884103.1| alanine racemase, catabolic [Bordetella parapertussis 12822]
 gi|33566229|emb|CAE37137.1| alanine racemase, catabolic [Bordetella parapertussis]
          Length = 375

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 156/351 (44%), Gaps = 43/351 (12%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AV+K NAYG G E+       A  Q   +  ++E V+ R       I +L G   P   +
Sbjct: 41  AVLKANAYGHGIEQAVAGFSAA--QGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLE 98

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV--DTGFNRLGLSLQEALDFTHNSF 150
           I+   +L   + +  Q   +  L    +S    + V  ++G NRLG     A D   +++
Sbjct: 99  IVDRYHLATTVHTREQ---FDMLAHARLSRRVDIMVKLNSGMNRLGF----APDAYGSAY 151

Query: 151 NK--KLGQLSLI-----ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL 203
            +  +L +  ++     ++H ACAD P       Q+  F    +H  G   S+ +S+  L
Sbjct: 152 ARAQQLHEYGVVGGIGKMTHFACADGPQGVTQ--QMNVFNGATAHLAG-ATSVCNSAATL 208

Query: 204 ------LGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELV 254
                 +G +      RPGI LYG +   D    +  +   +T  + +I I+   AG  V
Sbjct: 209 RYADLAVGHDGQTHWVRPGICLYGASPFADAQAGAFGLIPAMTLRSELIAIQDIPAGAAV 268

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            YG   +  R   I V A GYADGYP         H+ +   G    + G    ++G+++
Sbjct: 269 GYGAIFRADRPMRIGVVACGYADGYP--------RHAGT---GTPLTVGGVRTRLVGRVS 317

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTR 364
           MDM M D+    +  +G  + ++G D   +D+VA A+GT  Y+LL  +  R
Sbjct: 318 MDMLMVDLDPVPAAGIGTPVVLWGEDGPSVDEVAEAAGTIGYELLCALAPR 368


>gi|116513509|ref|YP_812415.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275721|sp|Q04C45|ALR_LACDB RecName: Full=Alanine racemase
 gi|116092824|gb|ABJ57977.1| Alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 376

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 144/328 (43%), Gaps = 34/328 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+L A+K N     A L    +   VVK NAYG G  ++AP +  AG   F V  ++E
Sbjct: 11  LHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGAARLAPVMEEAGADGFCVAMLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSK-LMSCGVSHPYA 125
           G++LR       I VL G+ P +E  +   N I + +SS+  L    K L   G+     
Sbjct: 71  GLELRRAQIVKPILVL-GLQPAEESALAAANDISLPVSSLDWLKKAEKVLRKEGLQLKIH 129

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLII----SHLACADDPSSHVNSVQLE 180
           L +D+G  R+G S  E  DF   + N+ L G  +  +    +H A AD   +     Q++
Sbjct: 130 LAIDSGMGRIGFSEDE--DF--KAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHP 231
           RF+ + S    K     + +++ IL   +    + R GI LYG       G+  +  +  
Sbjct: 186 RFKHMESLLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+            
Sbjct: 246 LEPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRK--------- 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTM 319
              F G K  +     PI+G++ MD  M
Sbjct: 297 ---FQGFKVKVGDTYCPIVGRVCMDQFM 321


>gi|222109415|ref|YP_002551679.1| alanine racemase [Acidovorax ebreus TPSY]
 gi|254802363|sp|B9MAN2|ALR_DIAST RecName: Full=Alanine racemase
 gi|221728859|gb|ACM31679.1| alanine racemase [Acidovorax ebreus TPSY]
          Length = 365

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 155/352 (44%), Gaps = 46/352 (13%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AVVK NAYG G E++   L  A    F +  + E  ++R    +  I +L G+  P   +
Sbjct: 32  AVVKANAYGHGIERVFEGLRAA--DGFALLDLAEAERVRALGWRGPILLLEGVFEPRDLE 89

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
           +     L   +    Q+ + +   +  V H   L++++G NRLG        FT   +  
Sbjct: 90  LCSRLGLWHAVHCDAQIDWLAAHKT-QVPHRVFLKMNSGMNRLG--------FTPERYRS 140

Query: 153 KLGQLSLI--------ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL 204
              +L+ +        ++H + AD P    + VQ   F+T      G E  +A+S+ +L 
Sbjct: 141 AWARLNALPQVDEISCMTHFSDADGPRGIAHQVQA--FQTATRDLPG-ERCIANSAALLR 197

Query: 205 -GPNYHFQL--TRPGISLYGGT----DKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
            G +   +L   R GI LYG      ++      +Q  +T  +RII +++  AG+ V YG
Sbjct: 198 HGGDAQVRLDWVRAGIVLYGSAPDHPERRAADWDLQPTMTLASRIIGVQQLQAGDTVGYG 257

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
            +        I V A GYADGYP         H  +   G    + G     +G+++MDM
Sbjct: 258 SRFTAQGPLGIGVVACGYADGYP--------RHCDT---GTPVLVNGVRTRTIGRVSMDM 306

Query: 318 TMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVRIGTR 364
              D+T      +G  + ++G       + +D+VA A GT  Y+L+  +  R
Sbjct: 307 LAVDLTPVPGAGLGAEVTLWGRAANGAVLPIDEVAQAGGTIGYELMCALAPR 358


>gi|322373681|ref|ZP_08048217.1| alanine racemase [Streptococcus sp. C150]
 gi|321278723|gb|EFX55792.1| alanine racemase [Streptococcus sp. C150]
          Length = 367

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 165/374 (44%), Gaps = 33/374 (8%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           K+DL+A+  N   + + +    +T AVVK NAYG G   +A  + +  V  F V++++E 
Sbjct: 12  KVDLSAISENIEQVVSHIPKKVKTFAVVKANAYGHGAVAVAKQV-SERVDGFCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP--QLTFYSKLMSCGVSHPYAL 126
           ++LR    +  I +L  + P +  +    N+   ++S+   ++T    L   G++    +
Sbjct: 71  LELRQAGLEQPILILGVVLPDEVPLAIQENITLTVASLEWLEMTKNQGLDLTGLT--CHI 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VD+G  R+G+  Q   D            +  I +H A AD+        QL  F  L+
Sbjct: 129 KVDSGMGRIGVRSQGDADSLIAGLKTLGADVEGIFTHFATADEADDSKFKRQLAFFTNLV 188

Query: 187 SHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAE 239
            +     + + AS +++S  +      F   R G+ +YG       +N  + ++  ++ E
Sbjct: 189 ENLADRPRLVHASNSATS--IWHAETVFNAVRLGVVIYGLNPSGSALNLPYKIRPALSLE 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             ++ ++   AG+ V YG     T D +I    IGYADG+   L G              
Sbjct: 247 TALVHVKTLPAGQDVGYGATYTTTTDEVIGTIPIGYADGWTRDLQGFHV----------- 295

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G   PI+G+++MD     +     +  G  + + G +    I   +VA   GT NY
Sbjct: 296 -IVDGQFCPIVGRVSMDQITIRLPKVYPL--GTPVTLIGENGRASITATEVAEKRGTINY 352

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +  R  + Y
Sbjct: 353 EVLCLLSDRVPRSY 366


>gi|208779130|ref|ZP_03246476.1| alanine racemase [Francisella novicida FTG]
 gi|208744930|gb|EDZ91228.1| alanine racemase [Francisella novicida FTG]
          Length = 365

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 38/375 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           L+I +  L+NN   +    G+A+    VK NAYG G E I    ++  + DFF V +V E
Sbjct: 4   LEISVQTLRNNITIIKEYVGSAKICFPVKANAYGHGLELIVE--HSHDLVDFFAVANVLE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
             ++ L   +  + +   I       I   N+   I     +    K        P+  +
Sbjct: 62  AFRV-LDVVEKPVMIFGVIEYNYIDRILSKNIRISIQDYNDIEKLEKFAKYYNKKPFVHV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++
Sbjct: 121 NINTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIV 180

Query: 187 SHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHPMQTVV 236
              KG+       L++S G L      + + RPGI  YG       D+ I +  P+  ++
Sbjct: 181 KFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLL 240

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   +II +++   GE V Y    +      +AV  IGY DG+P               L
Sbjct: 241 SKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE-------------L 284

Query: 297 GGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           G +GF  I   M P+ G+++MD +T+    +   ++VGD +++     +  +    +A  
Sbjct: 285 GDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQ 344

Query: 350 SGTTNYDLLVRIGTR 364
           + T  YD++  +  R
Sbjct: 345 TNTIEYDIMSTLNDR 359


>gi|260906034|ref|ZP_05914356.1| alanine racemase [Brevibacterium linens BL2]
          Length = 407

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 174/409 (42%), Gaps = 71/409 (17%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S   +R +ID+ AL+ N   +      AR   VVK NAYG G + +APAL+ AG +DF V
Sbjct: 7   SGVLVRAEIDVAALQANAAVLAKRLAPARLKCVVKANAYGHGIDIVAPALFAAGWRDFCV 66

Query: 63  TSVEEGVKLR------------LYTPQARI--FVLYGIHPGQEKIIFDTNLIPVISSVPQ 108
            ++ E + LR            LY P   +   V  GI  G          +  + S+ +
Sbjct: 67  ATINEALHLRELLGDDVTITAWLYGPTTDLDAAVAAGIELG----------VSTVDSLER 116

Query: 109 LTFYSKLMSCGVSHPYALQVDTGFNRLGLS---LQEAL------------DFTHNSFNKK 153
           L   ++  +   +    L+VDTG  R GL+    + AL            D    S    
Sbjct: 117 LRDAARRTNT--TARLHLKVDTGLGRNGLAPADWKRALVKLKTLDARTESDGADASATTP 174

Query: 154 LGQLSLIISHLACADDPSSHVNSVQLERF----RTLISHYKG----------IEASLASS 199
             ++  I+SH A AD+P     + Q + F    R L +   G          +E  +A+S
Sbjct: 175 ELEIVGIMSHYAVADEPERVETAQQTQVFDSAHRELSAVLDGAQGRLGESERLEVHIANS 234

Query: 200 SGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSY 256
              L    +     R G+SLYG +   D+ +K   +   +   +++I ++    G   SY
Sbjct: 235 PAALTLSPFPGTSARVGLSLYGLSPLGDQTSKDLGLVPAMRLVSQVINLKDIPTGHGASY 294

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           G       D+  A+   GY DG   + S   +E S          I+G   P++G+I MD
Sbjct: 295 GLTFTAAADTRFALVPGGYGDGIARSASN-KAEVS----------IRGTRYPVVGRIAMD 343

Query: 317 MTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTR 364
             + ++  +  + +GD + IFGPD     +    + T NY+++ RI  R
Sbjct: 344 QMIVEV-GAGEVAIGDEVVIFGPDGPSAAEWGEWAETINYEIVTRISER 391


>gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
 gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
          Length = 846

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 168/391 (42%), Gaps = 47/391 (12%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYN 54
           +E L LK+  T L+ N  +M A   + R+           +VK +AYG G  +IA +L  
Sbjct: 475 SEALELKVHETILEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQE 534

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
             V    V   +EG +LR     A I ++        K +FD  L P + +   L    K
Sbjct: 535 HHVDYLAVAVADEGSELRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIK 593

Query: 115 LMSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                G+++ P  +++DTG +RLG ++++         N+       + SH   +D  SS
Sbjct: 594 AAEKEGITNFPIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSD--SS 651

Query: 173 HVNSV---QLERF-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
             ++    Q+E F       +   SH   I   + +++GI   P   + + R GI LYG 
Sbjct: 652 QFDAFTRGQIELFEKGSQELQAAFSH--KILRHICNTAGIERFPEAQYDMVRLGIGLYG- 708

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
              I+ S  +  V T +  I+ IR     + V Y     L R S IA   IGYADG    
Sbjct: 709 VSPIDNS-IIHNVSTLKTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRH 767

Query: 283 LSGLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           L              G+G     + G   P +G I MD+ M D+TD +    GD   IFG
Sbjct: 768 L--------------GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFG 812

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D+ +  ++    T  Y++L  I TR  + Y
Sbjct: 813 DDLPITVLSDKLETIPYEVLTSISTRVKRVY 843


>gi|15675637|ref|NP_269811.1| alanine racemase [Streptococcus pyogenes M1 GAS]
 gi|71911345|ref|YP_282895.1| alanine racemase [Streptococcus pyogenes MGAS5005]
 gi|20137226|sp|Q99Y98|ALR_STRP1 RecName: Full=Alanine racemase
 gi|13622847|gb|AAK34532.1| putative alanine racemase [Streptococcus pyogenes M1 GAS]
 gi|71854127|gb|AAZ52150.1| alanine racemase [Streptococcus pyogenes MGAS5005]
          Length = 366

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 167/373 (44%), Gaps = 31/373 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S+   +    +T AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + ++     +   I+S+  +                ++V
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGLKVHVKV 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL   + ++   +S  +    +  I +H A AD+      + QL+ F+ LI+ 
Sbjct: 131 DSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFFKKLIAG 190

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEA 240
            +     + AS +++S  +   +  F   R GI  YG    G+D ++   P+Q  ++ E+
Sbjct: 191 LEDKPRLVHASNSATS--IWHSDTIFNAVRLGIVSYGLNPSGSD-LSLPFPLQEALSLES 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ ++   AG+ V YG      +   +    IGYADG+   + G               
Sbjct: 248 SLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFSV------------ 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
            + G    I+G+++MD     +  +  +  G  + + G     +I   D+A    T NY+
Sbjct: 296 LVDGQFCEIIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTINYE 353

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 354 VLCLLSDRIPRIY 366


>gi|254374164|ref|ZP_04989646.1| alanine racemase [Francisella novicida GA99-3548]
 gi|151571884|gb|EDN37538.1| alanine racemase [Francisella novicida GA99-3548]
          Length = 365

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 38/375 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           L+I +  L+NN   +    G+A+    VK NAYG G E I    ++  + DFF V +V E
Sbjct: 4   LEISVQTLRNNITIIKEYVGSAKICFPVKANAYGHGLELIVE--HSHDLVDFFAVANVLE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
             ++ L   +  + +   I       I   N+   I     +    K        P+  +
Sbjct: 62  AFRV-LDVVEKPVMIFGVIEYNYIDRILSKNIRISIQDYNDIEKLEKFAKYYNKKPFVHV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++
Sbjct: 121 NINTGMNRMGVDYNDACRTIQQAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIV 180

Query: 187 SHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHPMQTVV 236
              KG+       L++S G L      + + RPGI  YG       D+ I +  P+  ++
Sbjct: 181 KFTKGLSQGIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRAIREIKPIARLL 240

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   +II +++   GE V Y    +      +AV  IGY DG+P               L
Sbjct: 241 SKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE-------------L 284

Query: 297 GGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           G +GF  I   M P+ G+++MD +T+    +   ++VGD +++     +  +    +A  
Sbjct: 285 GDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQ 344

Query: 350 SGTTNYDLLVRIGTR 364
           + T  YD++  +  R
Sbjct: 345 TNTIEYDIMSTLNDR 359


>gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A]
          Length = 846

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 168/391 (42%), Gaps = 47/391 (12%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYN 54
           +E L LK+  T L+ N  +M A   + R+           +VK +AYG G  +IA +L  
Sbjct: 475 SEALELKVHETILEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQE 534

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
             V    V   +EG +LR     A I ++        K +FD  L P + +   L    K
Sbjct: 535 HHVDYLAVAVADEGSELRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIK 593

Query: 115 LMSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                G+++ P  +++DTG +RLG ++++         N+       + SH   +D  SS
Sbjct: 594 AAEKEGITNFPIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSD--SS 651

Query: 173 HVNSV---QLERF-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
             ++    Q+E F       +   SH   I   + +++GI   P   + + R GI LYG 
Sbjct: 652 QFDAFTRGQIELFEKGSQELQAAFSH--KILRHICNTAGIERFPEAQYDMVRLGIGLYG- 708

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
              I+ S  +  V T +  I+ IR     + V Y     L R S IA   IGYADG    
Sbjct: 709 VSPIDNS-IIHNVSTLKTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRH 767

Query: 283 LSGLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           L              G+G     + G   P +G I MD+ M D+TD +    GD   IFG
Sbjct: 768 L--------------GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFG 812

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D+ +  ++    T  Y++L  I TR  + Y
Sbjct: 813 DDLPITVLSDKLETIPYEVLTSISTRVKRVY 843


>gi|260587632|ref|ZP_05853545.1| alanine racemase [Blautia hansenii DSM 20583]
 gi|260541897|gb|EEX22466.1| alanine racemase [Blautia hansenii DSM 20583]
          Length = 382

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 172/391 (43%), Gaps = 39/391 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPAL----YNA 55
           M     ++  I+L A+  N  +M + +  N +  AV+K + YG G   IA  +    Y  
Sbjct: 1   MRIQSRIQAHINLDAIDYNLKNMYDYMGKNTQIIAVLKADGYGHGAVPIAKEIEAYSYIW 60

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           G+    V +VEEG +LR    +  I +L   +      I   +  P   +V +L+   +L
Sbjct: 61  GIA---VATVEEGRELRKAGIKKPILILGYTYEEDYDRIVKEDFQP---TVFKLSMAEQL 114

Query: 116 MSCGVSHPYALQV----DTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
               V     L++    DTG  R+G   +++A+            +L  I +H A AD+ 
Sbjct: 115 SKAAVKANKTLKIHIKLDTGMTRIGYRHIEDAIPEIVEISKLPNIELEGIFTHFARADET 174

Query: 171 SSHVNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GT 223
                  QLE+++  +   K  GI   +   ++S+ I+   + +F   R GI LYG   +
Sbjct: 175 DLAPAYQQLEKYQEFLDALKRQGISIPVKHCSNSAAIIRMQDAYFDAVRAGIILYGMYPS 234

Query: 224 DKINKSHPM-QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
           +++ K   + +  +  ++ I  I++   G  +SYGG     + + +A   +GYADGY   
Sbjct: 235 NEVEKDKILLKPAMELKSHIAYIKEVEPGVEISYGGTFTTEKVTRVATIPVGYADGYSRG 294

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
           LS             G   I+G    ILGK+ MD  M D+T+    +  D + + G D  
Sbjct: 295 LSN-----------KGSVLIRGKRAKILGKVCMDQFMVDVTEIPEAKELDEVTLLGKDGT 343

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             I ++++   SG  NY+    I  R  + Y
Sbjct: 344 DCITMEELGELSGRFNYEFACCISKRVPRVY 374


>gi|258588448|pdb|3HA1|A Chain A, Alanine Racemase From Bacillus Anthracis (Ames)
 gi|258588449|pdb|3HA1|B Chain B, Alanine Racemase From Bacillus Anthracis (Ames)
          Length = 397

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 162/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVV  NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVXGNAYGHDYVPVAKIALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +      V + GK       VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 E------VLVNGK------RVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|254372706|ref|ZP_04988195.1| alanine racemase [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570433|gb|EDN36087.1| alanine racemase [Francisella novicida GA99-3549]
          Length = 365

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 38/375 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           L+I +  L+NN   +    G+A+    VK NAYG G E I    ++  + DFF V +V E
Sbjct: 4   LEISVQTLRNNITIIKEYVGSAKICFPVKANAYGHGLELIVE--HSHDLVDFFAVANVLE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
             ++ L   +  + +   I       I   N+   I     +    K        P+  +
Sbjct: 62  AFRV-LDVVEKPVMIFGVIEYNYIDRILSKNIRISIQDYNDIEKLEKFAKYYNKKPFVHV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++
Sbjct: 121 NINTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIV 180

Query: 187 SHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHPMQTVV 236
              KG+       L++S G L      + + RPGI  YG       D+ I +  P+  ++
Sbjct: 181 KFTKGLSQGIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLL 240

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   +II +++   GE V Y    +      +AV  IGY DG+P               L
Sbjct: 241 SKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE-------------L 284

Query: 297 GGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           G +GF  I   M P+ G+++MD +T+    +   ++VGD +++     +  +    +A  
Sbjct: 285 GDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQ 344

Query: 350 SGTTNYDLLVRIGTR 364
           + T  YD++  +  R
Sbjct: 345 TNTIEYDIMSTLNDR 359


>gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
          Length = 835

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 180/378 (47%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL +N  S  AL     R   + K   YG+G  ++A AL    +    V   +E
Sbjct: 471 LEIDLEALVSNLKSYKALLPSETRIIVMAKAQGYGIGAYELAKALEQQDLAALAVALADE 530

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH-P 123
           G +LR    +  +  +  ++P  E  +++  + L P I +   L  +++ +   G+SH P
Sbjct: 531 GKELR---SKGILLPIIVMNPEVEAFEVMTQSRLEPEIYNERILREFARHVERQGLSHYP 587

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNK--KLGQLSLIISHLACADDPS-SHVNSVQL 179
             +++DTG +R G +  +E L+    + ++   L ++  I +HLA AD+P+ S     Q 
Sbjct: 588 VHIELDTGMHRTGFTPDRETLEHLAQTLHEVEPLIRVQSIFTHLAAADEPTMSDFTEQQF 647

Query: 180 ERFRT----LISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
             +      L S   Y+ +   + +++GI    ++H+ + R G+ LYG +     S  ++
Sbjct: 648 ALYDEGADYLTSQLSYRPLR-HVQNTAGIERYNHHHYDMARLGVGLYGIS--ATGSLTLE 704

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V      ++ I+    GE + YG + ++     I +  IGYADGY       D   S  
Sbjct: 705 PVAKLRTTLLQIKTIPDGETIGYGRRGQVAPGGQIGIIPIGYADGY-------DRRFSCG 757

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFG-PDIKLDDVALASG 351
           V   G   I   + PI+G + MD  M D++     +  GD + IFG P +++ D+A   G
Sbjct: 758 V---GSVMIHDTLCPIVGNVCMDTCMVDLSPLQGKVAEGDEVIIFGVPGLQVSDLAERIG 814

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+++ ++  R  + Y
Sbjct: 815 TIPYEVISKLSPRIKRTY 832


>gi|294791096|ref|ZP_06756254.1| alanine racemase [Scardovia inopinata F0304]
 gi|294458993|gb|EFG27346.1| alanine racemase [Scardovia inopinata F0304]
          Length = 460

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 175/413 (42%), Gaps = 60/413 (14%)

Query: 11  IDLTALKNNWHSM------------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           +DL AL++N   +            N   G A+   VVK +AYG G    A A    G  
Sbjct: 33  VDLAALRDNMRHLTDLADEAAKSGKNPAQGPAQVMGVVKADAYGHGLIPTALAALAGGAT 92

Query: 59  DFFVTSVEEGVKLR---LYTPQARIFV-LY-GIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
                   E + LR   +   +ARI   LY G +   +K+I     I + S        +
Sbjct: 93  WLGTAQSREALLLRKLGIGPDRARILTWLYNGKYDPFDKLIGHDIDIALGSVQGIEAVAA 152

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
              + G      ++VDTGF R G +    +EAL+      ++ L  +  + SHLA AD+P
Sbjct: 153 AARTAGKKARVHIKVDTGFGRNGFTPEEFEEALNLLKEKVHENLLDVVGVWSHLAVADNP 212

Query: 171 SS----HVNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG 221
           +          Q+  F   +      G+  SL   A+++  L  P  H++L RPG+ LYG
Sbjct: 213 ADPECRAATEEQIASFSRFVDRMDNAGLHPSLRHLANTAATLTRPQIHYELVRPGVGLYG 272

Query: 222 -------GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
                  GT       P  TV   +A++  ++   AG  +SYG     T+ +  A   +G
Sbjct: 273 YEPDPAMGTASDWGLKPAMTV---QAQLGTVKNLPAGHSISYGRTYMTTQATSTADLPVG 329

Query: 275 YADGYPLTLS--------GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI---T 323
           YADG   + S        G+D   +P   +  +G     +V I G++ MD  + D+    
Sbjct: 330 YADGIHRSASGFNRAGSLGVDHPGAPVRIMTSQG---PKIVHISGRVCMDQCILDLQGFA 386

Query: 324 DSLSIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             L +  GD +++FGP       +   DD A A+GT +Y++   +  R  + Y
Sbjct: 387 SDLGVCEGDTVELFGPGRGEQFGEPTADDWARAAGTISYEIFTCLRNRIPRLY 439


>gi|325124086|gb|ADY83609.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 367

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 163/381 (42%), Gaps = 56/381 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL+NN   +     N++  AVVK NAYG G E++  A   A    F +  ++E  +
Sbjct: 9   IHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDLDEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +R       I +L GI   Q+  +FD     L   I S  Q+ +  K       H Y  Q
Sbjct: 67  IRALGWTGPILLLEGIFSPQD--LFDCVQYQLSFNIHSEAQIEWVEK-------HAYPAQ 117

Query: 128 VD------TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSV-- 177
            D      +G NRLG   Q  +       N  L  +S I  + H + AD        +  
Sbjct: 118 FDVCLKMNSGMNRLGFKPQHYVQAWERLNN--LANVSKITHMMHFSDADGERFGQQGIDY 175

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP-- 231
           Q+  F  ++    G E S+++S+ IL    Y  QL     R GI LYG +     +H   
Sbjct: 176 QINAFEEIVKDLPG-ERSVSNSAAIL---RYQDQLKSDYARSGIMLYGSSPDY-PTHSIA 230

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +Q  ++  + II ++     E V YG      +   I + A GYADGY         
Sbjct: 231 DWGLQPTMSLRSEIISVQHLEPNESVGYGSNFVAEQLMTIGIVACGYADGY--------Q 282

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK-----L 343
             SP+   G    +       +G+++MDM   D+T   S +VG  + ++G   K     +
Sbjct: 283 RISPT---GTPVLVDSVRTRTIGRVSMDMLAVDLTGIDSAKVGSEVVLWGQSSKGVVLPI 339

Query: 344 DDVALASGTTNYDLLVRIGTR 364
           DDVA++SGT  Y+L+  +  R
Sbjct: 340 DDVAVSSGTVGYELMCAVTAR 360


>gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
 gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
          Length = 821

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 168/391 (42%), Gaps = 47/391 (12%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYN 54
           +E L LK+  T L+ N  +M A   + R+           +VK +AYG G  +IA +L  
Sbjct: 450 SEALELKVHETILEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQE 509

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
             V    V   +EG +LR     A I ++        K +FD  L P + +   L    K
Sbjct: 510 HHVDYLAVAVADEGSELRKAGITASIIIM-DPELTAFKTMFDYKLEPEVYNFHLLDALIK 568

Query: 115 LMSC-GVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                G+++ P  +++DTG +RLG ++++         N+       + SH   +D  SS
Sbjct: 569 AAEKEGITNFPIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSD--SS 626

Query: 173 HVNSV---QLERF-------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
             ++    Q+E F       +   SH   I   + +++GI   P   + + R GI LYG 
Sbjct: 627 QFDAFTRGQIELFEKGSQELQAAFSH--KILRHICNTAGIERFPEAQYDMVRLGIGLYG- 683

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
              I+ S  +  V T +  I+ IR     + V Y     L R S IA   IGYADG    
Sbjct: 684 VSPIDNS-IIHNVSTLKTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRH 742

Query: 283 LSGLDSEHSPSVFLGGKG----FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           L              G+G     + G   P +G I MD+ M D+TD +    GD   IFG
Sbjct: 743 L--------------GRGNAYCLVNGKKAPYVGNICMDVCMIDVTD-IDCREGDQAIIFG 787

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D+ +  ++    T  Y++L  I TR  + Y
Sbjct: 788 DDLPITVLSDKLETIPYEVLTSISTRVKRVY 818


>gi|187250740|ref|YP_001875222.1| alanine racemase [Elusimicrobium minutum Pei191]
 gi|186970900|gb|ACC97885.1| Alanine racemase [Elusimicrobium minutum Pei191]
          Length = 369

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 161/375 (42%), Gaps = 34/375 (9%)

Query: 11  IDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT-SVEEG 68
           IDL  LK+N + + +L +   +   V+K NAYG G  K+A       + D   T SVEEG
Sbjct: 12  IDLENLKHNINYVRSLLNPKTKMLFVLKANAYGHGAVKLAKYAQENNLCDMLGTASVEEG 71

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDT----NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           V+LR    +  + VL  ++P +    F+T    +L   I+S+       ++ S      Y
Sbjct: 72  VELRENGIKLPVLVLGSVYPFEA---FETAAAYDLAITIASLSAAKAVCEIASKINKTVY 128

Query: 125 A-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++ DTG  R+G                K   +  + +HL+ + D      S QL  F 
Sbjct: 129 CHVKQDTGMGRIGTRRTGVAKILQELKQNKNIIIEGLYTHLS-STDSDEVFTSCQLGYFE 187

Query: 184 --TLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
              L +    I+  +    ++ G L  P   F + R G+  YG    + +    + V++ 
Sbjct: 188 EAALAAKADNIDVEIFHACATMGTLFAPRGRFDMVRLGLGAYG---MVKEDKNFKPVLSL 244

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +++I+ ++       +SY       +   IA   +GY DGY   +SG        V + G
Sbjct: 245 KSKIVFVKDVKKDFAISYNQSFIAPKQMHIATVPVGYGDGYMRAMSG-----KAEVLIAG 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354
           K         ++G ITMDM M D+TD     VGD + + G     +I   ++A  + T  
Sbjct: 300 K------RCKVIGNITMDMIMVDVTDVQEATVGDEVVLIGKQGDEEITAWELASWANTIA 353

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   I  R  +FY
Sbjct: 354 YEITTLITARVPRFY 368


>gi|94989166|ref|YP_597267.1| alanine racemase [Streptococcus pyogenes MGAS9429]
 gi|94993056|ref|YP_601155.1| alanine racemase [Streptococcus pyogenes MGAS2096]
 gi|166969429|sp|Q1JA50|ALR_STRPB RecName: Full=Alanine racemase
 gi|166969430|sp|Q1JKA0|ALR_STRPC RecName: Full=Alanine racemase
 gi|94542674|gb|ABF32723.1| alanine racemase [Streptococcus pyogenes MGAS9429]
 gi|94546564|gb|ABF36611.1| Alanine racemase [Streptococcus pyogenes MGAS2096]
          Length = 366

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 168/373 (45%), Gaps = 31/373 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S+   +    +T AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + ++     +   I+S+  +                ++V
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGLKVHVKV 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL   + ++   +S  +    +  I +H A AD+      + QL+ F+ LI+ 
Sbjct: 131 DSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFFKKLIAG 190

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEA 240
            +     + AS +++S  +   +  F   R GI  YG    G+D ++   P+Q  ++ E+
Sbjct: 191 LEDKPRLVHASNSATS--IWHSDTIFNAVRLGIVSYGLNPSGSD-LSLPFPLQEALSLES 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ ++   AG+ V YG      +   +    IGYADG+   + G               
Sbjct: 248 SLVHVKMISAGDTVGYGVTYTAKKSEYVGTVPIGYADGWTRNMQGFSV------------ 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
            + G    I+G+++MD     ++ +  +  G  + + G     +I   D+A    T NY+
Sbjct: 296 LVDGQFCEIIGRVSMDQLTIRLSKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTINYE 353

Query: 357 LLVRIGTRYAKFY 369
           +L  +  R  + Y
Sbjct: 354 VLCLLSDRIPRIY 366


>gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 835

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 180/378 (47%), Gaps = 33/378 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL +N  S  AL     R   + K   YG+G  ++A AL    +    V   +E
Sbjct: 471 LEIDLEALVSNLKSYKALLPSETRIIVMAKAQGYGIGAYELAKALEQQDLAALAVALADE 530

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH-P 123
           G +LR    +  +  +  ++P  E  +++  + L P I +   L  +++ +   G+SH P
Sbjct: 531 GKELR---SKGILLPIIVMNPEVEAFEVMTQSRLEPEIYNERILREFARHVERQGLSHYP 587

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNK--KLGQLSLIISHLACADDPS-SHVNSVQL 179
             +++DTG +R G +  +E L+    + ++   L ++  I +HLA AD+P+ S     Q 
Sbjct: 588 VHIELDTGMHRTGFTPDRETLEHLAQTLHEVEPLIRVQSIFTHLAAADEPTMSDFTEQQF 647

Query: 180 ERFRT----LISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
             +      L S   Y+ +   + +++GI    ++H+ + R G+ LYG +     S  ++
Sbjct: 648 ALYDEGADYLTSQLSYRPLR-HVQNTAGIERYNHHHYDMARLGVGLYGIS--ATGSLTLE 704

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V      ++ I+    GE + YG + ++     I +  IGYADGY       D   S  
Sbjct: 705 PVAKLRTTLLQIKTIPDGETIGYGRRGQVAPGGQIGIIPIGYADGY-------DRRFSCG 757

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFG-PDIKLDDVALASG 351
           V   G   I   + PI+G + MD  M D++     +  GD + IFG P +++ D+A   G
Sbjct: 758 V---GSVMIHDTLCPIVGNVCMDTCMVDLSPLQGKVAEGDEVIIFGVPGLQVSDLAERIG 814

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+++ ++  R  + Y
Sbjct: 815 TIPYEVISKLSPRIKRTY 832


>gi|300813596|ref|ZP_07093927.1| alanine racemase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512344|gb|EFK39513.1| alanine racemase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 388

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 153/345 (44%), Gaps = 55/345 (15%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           ++ N++   V+K + Y  G  ++  A    G+  F V ++ EG+ LR +     I +L G
Sbjct: 29  INKNSKIMCVIKSDGYRAGALELTEASIKFGINYFGVATLSEGISLRKHFKDINILIL-G 87

Query: 86  IHPG---QEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLG-LSLQ 140
             P    ++   +D  ++P I S      Y+++    G      L +DTG NR+G +  +
Sbjct: 88  YTPSYLLEDLCKYD--IMPNIYSYDNCKDYNEICKKYGKVGKIHLSIDTGMNRVGFIPGK 145

Query: 141 EAL-DFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTLISHYKGIEAS-- 195
           EA  D    S   KL  + +  + SH A AD           ++F T  S  K IE +  
Sbjct: 146 EAFFDIIKIS---KLSNIKIDGVFSHFAKADVDEDFTK----KQFDTFTSFTKEIENAGV 198

Query: 196 ------LASSSGILLGPNYHFQLTRPGI---SLYGGTDKINKSHPMQTVVTAEARIILIR 246
                 +++S+ IL    Y   + RPG     LY G  K ++  P++  +   A I  I+
Sbjct: 199 NLGLKHISNSASILKHREYDLDMVRPGAIMHGLYKGFFK-DEKLPLKKDLQVFAMIANIK 257

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G+ VSYG +   T+D+ +    +GYADG+P  LSG       SV +GGK       
Sbjct: 258 TIKKGQGVSYGHKYIATKDTKVVTIPLGYADGFPRILSG-----KFSVLIGGK------K 306

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
            P +G I MD  M D T              G D K+DDVA+  G
Sbjct: 307 CPQIGNICMDQFMVDAT--------------GIDCKIDDVAVLLG 337


>gi|94991109|ref|YP_599209.1| alanine racemase [Streptococcus pyogenes MGAS10270]
 gi|166969431|sp|Q1JF94|ALR_STRPD RecName: Full=Alanine racemase
 gi|94544617|gb|ABF34665.1| Alanine racemase [Streptococcus pyogenes MGAS10270]
          Length = 366

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 165/372 (44%), Gaps = 29/372 (7%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S+   +    +T AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + ++     +   I+S+  +                ++V
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGLKVHVKV 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL   + ++   +S  +    +  I +H A AD+      + QL+ F+ LI+ 
Sbjct: 131 DSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFFKKLIAG 190

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEAR 241
            +     + AS +++S  +   +  F   R GI  YG       ++   P+Q  ++ E+ 
Sbjct: 191 LEDKPRLVHASNSATS--IWHSDTIFNAVRLGIVSYGLNPSGSNLSLPFPLQEALSLESS 248

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ ++   AG+ V YG      +   +    IGYADG+   + G                
Sbjct: 249 LVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFSV------------L 296

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDL 357
           + G    I+G+++MD     I  S +  +G  + + G     +I   D+A    T NY++
Sbjct: 297 VDGQFCEIIGRVSMD--QLTIRLSKAYPLGTKVTLIGSNQQKNISTTDIANYRNTINYEV 354

Query: 358 LVRIGTRYAKFY 369
           L  +  R  + Y
Sbjct: 355 LCLLSDRIPRIY 366


>gi|256545190|ref|ZP_05472556.1| alanine racemase [Anaerococcus vaginalis ATCC 51170]
 gi|256399231|gb|EEU12842.1| alanine racemase [Anaerococcus vaginalis ATCC 51170]
          Length = 368

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 169/382 (44%), Gaps = 54/382 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL  + NN  S+   S N++  AV+K +AYGLG  ++A  + N  +    V   +E 
Sbjct: 7   LLVDLDKILNNIKSIKEKSQNSKFCAVLKADAYGLGSLEVANYIKNH-IDYIAVAQFKEA 65

Query: 69  VKLRLYTPQARIFVLYGIHP-------GQ---EKIIFDTNLIPVISSVPQLTFYSKLMSC 118
             LR    +  I +L G  P       G+   + +I+D +    I+S        KL S 
Sbjct: 66  KYLRDNGIKIPILIL-GYLPIDKYNECGKLDIDVVIYDLDYAKEINS--------KLNSK 116

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII----SHLACADDPSSHV 174
              H   + +DTG  R+G       DF      K     +L      SH A AD+     
Sbjct: 117 INCH---IGLDTGHTRIGFR-----DFEIEKIKKLKELKNLNFIGAFSHFATADEKDLTY 168

Query: 175 NSVQLERFRTLISHYKG-IEASLASSSGILLGPNYHFQ--LTRPGISLYG--GTDKINK- 228
            + Q ++F  +I   K   +  L   +       Y F+  L R GISLYG   +D I + 
Sbjct: 169 TNEQYKKFTYIIDKIKDDFDLKLVHIANSAASMEYDFKSDLLRVGISLYGVYPSDYIKEI 228

Query: 229 -SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V   +A+I  ++    G  +SYG     ++D  +A  AIGYADG+    S + 
Sbjct: 229 SKIKLEQVFEFKAQISFVKNVKKGTSISYGRTFTASKDMKVATVAIGYADGFKRAFSNI- 287

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
                     G+  + G +  ++G++ MD  M D++D +  ++GDYI ++ PDI  +  A
Sbjct: 288 ----------GEVLVNGKLAKVVGRVCMDQMMIDVSD-IDCKIGDYITLY-PDIYKE--A 333

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y+L+  I  R  + Y
Sbjct: 334 KKINTIPYELMTSISKRVPRIY 355


>gi|169829733|ref|YP_001699891.1| alanine racemase [Lysinibacillus sphaericus C3-41]
 gi|168994221|gb|ACA41761.1| Alanine racemase [Lysinibacillus sphaericus C3-41]
          Length = 389

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 164/393 (41%), Gaps = 45/393 (11%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M + ++ R     IDL A++ N  ++   +  N +  AVVK NAYG G   +A A   AG
Sbjct: 17  MKTQQYFRPTKAMIDLQAIQQNIKNLKKFIRPNVQIIAVVKANAYGHGDVAVAQAALEAG 76

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V + +E + +R +  +  I +L G  P     I     I +     +    +  +
Sbjct: 77  ATILAVATPDEALHIRAHFEEPDILIL-GASPVSFAPIAAQQRIMLTVYASEWVQQAAPL 135

Query: 117 SCGVSHPYAL--QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + P  L  +VD+G  R+G+ S Q+ L       +    +L+ I +H A AD+  + 
Sbjct: 136 LAKEAEPLQLHIKVDSGMGRIGIRSEQDLLALYQTIESIDNVELNGIFTHFATADEKDTT 195

Query: 174 VNSVQLERF---------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--G 222
               Q++ F         + L+ H     ASL   S      N  +   R GIS+YG   
Sbjct: 196 YFDEQVQFFESCLAVMPKKPLLVHASNTAASLVKDS------NLQYDAVRYGISMYGLSP 249

Query: 223 TDKINKSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           +  +    P  +Q   + E+ ++ +++   GE V YG       +  I    IGYADG  
Sbjct: 250 SSYVESILPFALQPAFSLESELVHVKEIKKGESVGYGATYVAPSNMWIGTIPIGYADGVI 309

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
             L G +              I G  +PI+G+I MD  M  +  + +I  G+ + + G  
Sbjct: 310 RKLGGQEV------------LIDGQRMPIVGRICMDQCMVALPKAYAI--GEKVTLIGQQ 355

Query: 341 ----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
               I +D+ A    T NY++   I  R  + Y
Sbjct: 356 GQNRISIDEWATKLETINYEIPCIITARVPRIY 388


>gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
 gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
          Length = 825

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 169/382 (44%), Gaps = 46/382 (12%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   A +    +   ++K + YG G  +IA  L +  V    V   +E
Sbjct: 466 LEVNLNAVVANLNYYRAFMKPETKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-HP 123
           GV LR     + I ++   +P     K +FD +L P + S   L    K     GV+  P
Sbjct: 526 GVTLRKNGITSNIMIM---NPEMTAFKTMFDYDLEPEVYSFRLLDALIKAAEKEGVTGFP 582

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--------LIISHLACADDPSSHVN 175
             +++DTG +R+G   +       N   + +G+L          + SH   +DD S    
Sbjct: 583 VHIKLDTGMHRMGFDPE-------NDMEELIGKLKHQNAIIPRSVFSHFVGSDDDSFDDF 635

Query: 176 SVQLERFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
           S    +F       K ++A+        + +S+GI   P     + R G+ LYG   + N
Sbjct: 636 SAH--QFELFDKGSKQLQAAFDHKILRHICNSAGIEHFPERQLDMCRLGLGLYGINSRNN 693

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           K+  +  V T +  I+ +    AG+ V Y  +  L RDS+IA   IGYADG    L    
Sbjct: 694 KT--INCVSTLKTTILQMHNVKAGDSVGYSRKTILDRDSVIAAIPIGYADGLNRRLG--- 748

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
           + H+  +  G K          +G I MD+ M D+TD +  + GD ++IFG  + +  ++
Sbjct: 749 NRHAYCLVNGQKA-------EYVGNICMDVAMIDVTD-IPCKEGDSVEIFGEHLPVQTLS 800

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y++L  I  R  + Y
Sbjct: 801 DILETIPYEVLTTISNRVKRVY 822


>gi|312863275|ref|ZP_07723513.1| alanine racemase [Streptococcus vestibularis F0396]
 gi|322516061|ref|ZP_08068998.1| alanine racemase [Streptococcus vestibularis ATCC 49124]
 gi|311100811|gb|EFQ59016.1| alanine racemase [Streptococcus vestibularis F0396]
 gi|322125476|gb|EFX96822.1| alanine racemase [Streptococcus vestibularis ATCC 49124]
          Length = 367

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 167/378 (44%), Gaps = 41/378 (10%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           K+DL+A+  N   + + +    +T AVVK NAYG G  ++A  + +  V+ F V++++E 
Sbjct: 12  KVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHV-SKQVEGFCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL------MSCGVSH 122
           ++LR    +  I +L  + P +  +    N+   ++S+  L    K       ++C +  
Sbjct: 71  LELRQAGLEQPILILGVVLPDEVPLAIQENITLTVASLEWLEMAKKQGLDLTGLTCHI-- 128

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
               ++D+G  R+G+   E  D            +  I +H A AD+        QL  F
Sbjct: 129 ----KIDSGMGRIGVRNLEDADNLIAGLKDLGADVEGIFTHFATADEADDSKFKRQLAFF 184

Query: 183 RTLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTV 235
             L+++     + + AS +++S  +      F   R G+ +YG       ++  + ++  
Sbjct: 185 TDLVNNLVDRPRLVHASNSATS--IWHAETVFNAVRLGVVIYGLNPSGSVLDLPYNIRPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ E  ++ ++   AG+ V YG     T D +I    IGYADG+   L G          
Sbjct: 243 LSLETALVHVKTLPAGKDVGYGATYTTTVDEVIGTIPIGYADGWTRDLQGFHV------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G + PI+G+++MD     +     +  G  + + G +    I   +VA   G
Sbjct: 296 -----IVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAEKRG 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++L  +  R  + Y
Sbjct: 349 TINYEVLCLLSDRVPRSY 366


>gi|115315060|ref|YP_763783.1| alanine racemase [Francisella tularensis subsp. holarctica OSU18]
 gi|122324934|sp|Q0BL88|ALR_FRATO RecName: Full=Alanine racemase
 gi|115129959|gb|ABI83146.1| alanine racemase [Francisella tularensis subsp. holarctica OSU18]
          Length = 365

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 168/381 (44%), Gaps = 50/381 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV--TSVE 66
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  + DFF    S+E
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHD--LVDFFAVANSLE 61

Query: 67  EGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--- 121
                R+        +++G+  +   EK+I +     +  S+    +  KL         
Sbjct: 62  ---AFRVTAVAKNPVLVFGVIYYEYIEKMISEN----IRVSIQDYEYIEKLEQIAKELDK 114

Query: 122 HPYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             YA + ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  
Sbjct: 115 KVYAHININTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKN 174

Query: 181 RFRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSH 230
           RF +++   KG+       L++S G L      + + RPGI  YG       D+ I +  
Sbjct: 175 RFDSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIK 234

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P+  +++   +II +++   GE V Y    +      +AV  IGY DG+P          
Sbjct: 235 PIARLLSKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE-------- 283

Query: 291 SPSVFLGGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFG--PDIKLDD 345
                LG +GF  I   M P+ G+++MD +T+    +   ++VGD +++    P  +   
Sbjct: 284 -----LGDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSA 338

Query: 346 VALAS--GTTNYDLLVRIGTR 364
            ++A    T  YD++  +  R
Sbjct: 339 FSIAKQINTIEYDIMSTLNDR 359


>gi|167629016|ref|YP_001679515.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1]
 gi|167591756|gb|ABZ83504.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1]
          Length = 394

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 147/352 (41%), Gaps = 24/352 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D+ AL +N  S+    G+ +    VVK NAYG G  + A  L   GV    VT V E
Sbjct: 5   VEVDMDALAHNARSIRQYLGDEKILYGVVKANAYGCGIVECARCLVENGVDRLAVTHVSE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH--PYA 125
           GV+LR     A I V+      +   +    L   +S V +    ++          P  
Sbjct: 65  GVQLRRSGIDAPILVMAPFMAEETGDLVRFGLTASVSDVDRAVQIAQEARRQGRRGLPVH 124

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++V+TG  R G+    A         +    L    +HLA A          Q+ RF   
Sbjct: 125 IKVETGLGRTGVVAAAAPLLVAAIVGQDELYLEGAFTHLATAATGDVRQVHRQVARFLET 184

Query: 186 ISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSHPMQTVVTA 238
           ++  +           +A+S+  L  P YHF   R G  LYG     +     ++ V   
Sbjct: 185 VAAMEACAGFSIPVKHVANSAAALAFPQYHFDGVRIGTLLYGQPAGPVAAGLALRDVWRL 244

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY-------PLTLSGLDS--- 288
           +AR+  +     G  V YG      R++ +AV  +GY DGY       P++L  L     
Sbjct: 245 KARVAHVATLPPGHGVGYGRAYVTRRETRVAVLPVGYVDGYQLEPVSVPVSLWDLAKVLV 304

Query: 289 EHSPSVF-LGGKGF---IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           + S + F LG       I     P+LGK+ M MTM D+TD   +++G  +Q+
Sbjct: 305 KTSAAYFGLGPTARSVRIGERRAPVLGKVAMQMTMIDVTDIPDVQLGTVVQL 356


>gi|229015642|ref|ZP_04172632.1| Alanine racemase [Bacillus cereus AH1273]
 gi|229021834|ref|ZP_04178410.1| Alanine racemase [Bacillus cereus AH1272]
 gi|228739474|gb|EEL89894.1| Alanine racemase [Bacillus cereus AH1272]
 gi|228745662|gb|EEL95674.1| Alanine racemase [Bacillus cereus AH1273]
          Length = 389

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEDAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G+       A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKESGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGERVPIVGRVTMDQLMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|328478057|gb|EGF47943.1| alanine racemase [Lactobacillus rhamnosus MTCC 5462]
          Length = 379

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 162/376 (43%), Gaps = 36/376 (9%)

Query: 11  IDLTA-LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID TA L N  H +  L    +  AVVK +AYG G  ++A     AG   F V  ++E +
Sbjct: 13  IDETAILHNVQHEVARLKKQTQLFAVVKADAYGHGMLRVAHVAKAAGASGFCVALLDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHP---YA 125
            LR       + VL GI P Q   I     + + +SSV  L     ++      P     
Sbjct: 73  DLRAANYTEPVLVL-GIVPSQYAAIAAAQTVSLPLSSVDWLKQALPVLEAQPELPPLRLH 131

Query: 126 LQVDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           + +DTG  R+G +    L +A+ F     + K   +  I +H A ADDP       Q+ +
Sbjct: 132 IALDTGMGRIGFTDDQTLLDAVAFIQA--HPKAFTIEGIFTHFATADDPDDAYFKQQVAK 189

Query: 182 FRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
           F  +++   ++     +++S+  L     +  + R G+++YG    G        P++  
Sbjct: 190 FNHMVALLPHRPRYVHVSNSATSLWHAACNGNMVRYGVAIYGLNPSGDAIPTTPFPLEPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ E+ +   ++  AG+ +SYG   +   D  I    +GYADG+   L G          
Sbjct: 250 LSLESELTFCKQVHAGDGISYGVTYRAKGDEFIGTVPVGYADGWLRRLQGFHV------- 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
                 + G+   I+G+I MD  M  +  +     G  + + G     +I L DVA  S 
Sbjct: 303 -----LVDGHPCEIVGRICMDQFMIRLPKAYP--AGTKVVLIGQSGDQEITLLDVAKYSH 355

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y++   + +R  +
Sbjct: 356 TIHYEIACNLTSRLKR 371


>gi|160895760|ref|YP_001561342.1| alanine racemase [Delftia acidovorans SPH-1]
 gi|226711039|sp|A9BR02|ALR_DELAS RecName: Full=Alanine racemase
 gi|160361344|gb|ABX32957.1| alanine racemase [Delftia acidovorans SPH-1]
          Length = 367

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 162/379 (42%), Gaps = 45/379 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL++N   +     +A+  AVVK NAYG G E +  AL   G   F +  + E  +
Sbjct: 9   IHSAALRHNLERVRQAVPDAKLWAVVKANAYGHGIENVFEALR--GADGFAMLDLAEAER 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +R    +  I +L G+  P   ++    ++   +    Q+ + +   +    H   L+++
Sbjct: 67  VRQLGWRGPILLLEGVFEPRDLELCSRLSIWHAVHCDAQIDWLAAHKTQN-GHRVFLKMN 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVN-SVQLE 180
           +G NRLG        FT   +     +L+ +        ++H + AD  +     S QL+
Sbjct: 126 SGMNRLG--------FTPERYRAAWARLNALPQVEEISFMTHFSDADAGAGQPGISAQLQ 177

Query: 181 RFRTLISHYKGIEASLASSSGILLGPN---YHFQLTRPGISLYGGTDKINK---SH-PMQ 233
           RF        G E S+ +S+  L   +         RPGI LYG +    +   +H  +Q
Sbjct: 178 RFHDATRDLPG-ERSVGNSAATLRQGDDALVRCDWVRPGIVLYGSSPDYPQHTAAHWDLQ 236

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
              T  +RII +++   G+ V YG +        +   A GYADGYP         H  +
Sbjct: 237 PTQTLSSRIIGVQQLTEGQSVGYGSRFTAEGPLRLGTVACGYADGYP--------RHCGT 288

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVAL 348
              G    + G     LG ++MDM   D+T      +G  + ++G       + +D+VA 
Sbjct: 289 ---GTPVLVNGVRTRTLGCVSMDMLAVDLTPVPDAGMGSEVTLWGRASNGAVLPIDEVAE 345

Query: 349 ASGTTNYDLLVRIGTRYAK 367
           A+GT  Y+L+  +  R  K
Sbjct: 346 AAGTLGYELMCAVAPRVNK 364


>gi|313123077|ref|YP_004033336.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279640|gb|ADQ60359.1| Alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 376

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 144/328 (43%), Gaps = 34/328 (10%)

Query: 9   LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+L A+K N   + + L    +   VVK NAYG G  ++AP +  AG   F V  ++E
Sbjct: 11  LHINLAAIKENTRQAKDHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGADGFCVAMLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSK-LMSCGVSHPYA 125
           G++LR       I VL G+ P +E  +   N I + +SS+  L    K L   G+     
Sbjct: 71  GLELRRAQIVKPILVL-GLQPAEEAALAAVNDISLPVSSLDWLKKAEKVLRKEGLQLKIH 129

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLII----SHLACADDPSSHVNSVQLE 180
           L +D+G  R+G S  E  DF   + N+ L G  +  +    +H A AD   +     Q++
Sbjct: 130 LAIDSGMGRIGFSEDE--DF--KAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHP 231
           RF+ + S    K     + +++ IL   +    + R GI LYG       G+  +  +  
Sbjct: 186 RFKHMESMLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTM 319
                  K  +     PI+G++ MD  M
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFM 321


>gi|228906022|ref|ZP_04069914.1| Alanine racemase [Bacillus thuringiensis IBL 200]
 gi|228937533|ref|ZP_04100175.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228970420|ref|ZP_04131075.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228976990|ref|ZP_04137398.1| Alanine racemase [Bacillus thuringiensis Bt407]
 gi|228782737|gb|EEM30907.1| Alanine racemase [Bacillus thuringiensis Bt407]
 gi|228789306|gb|EEM37230.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228822144|gb|EEM68130.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228853625|gb|EEM98390.1| Alanine racemase [Bacillus thuringiensis IBL 200]
 gi|326938023|gb|AEA13919.1| alanine racemase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 389

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKAFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LINGKRVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|323340097|ref|ZP_08080362.1| alanine racemase [Lactobacillus ruminis ATCC 25644]
 gi|323092474|gb|EFZ35081.1| alanine racemase [Lactobacillus ruminis ATCC 25644]
          Length = 380

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 155/377 (41%), Gaps = 37/377 (9%)

Query: 11  IDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+K+N       +  + +  AVVK NAYG G  ++A     AG   F V  ++EG+
Sbjct: 19  IDLDAIKHNIEIEKKRMRDDQKLFAVVKANAYGHGMIEVARTAKEAGANGFCVAIIDEGI 78

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHPYA 125
           +LR       + +L G+ P ++  +   N + V  +V  L F       L + G+     
Sbjct: 79  ELRNAGFDDLVLIL-GVCPAEQSNVIAANDLSV--AVGDLDFLENAKPLLKAQGLKLKVH 135

Query: 126 LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           L  DTG  R+G      + EA  F     N    +   I +H ACAD         QLE+
Sbjct: 136 LAFDTGMGRIGFVNGEKVHEAEAFMKE--NSDQFEFEGIFTHFACADTKDDSYYKKQLEK 193

Query: 182 FRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
           F  L      +     +A+S+  +   +      R GI++YG      ++     ++   
Sbjct: 194 FNELKDALDDLPPYVHVANSAASMWHDDCGGNAVRYGITMYGLNPSGRELELPCEIKPAF 253

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+ ++ +R    G  + YG    +     I    +GYADG+   + G           
Sbjct: 254 TLESELVSVRLLEPGTGIGYGKTYTVDEPQWIGTVPLGYADGWLRRMQGF---------- 303

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             K  + G     +G++ MD  M  +     +E G  + + G +    I   DVA  + T
Sbjct: 304 --KVLLNGEYCQSVGRVCMDQFMVRL--PYEMEKGTKVTLIGENGGKRITAQDVADYADT 359

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y++L  +  R  + +
Sbjct: 360 IHYEILCSVSERVPREF 376


>gi|73763191|gb|AAZ83975.1| alanine racemase [Pseudomonas putida]
          Length = 409

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 150/349 (42%), Gaps = 41/349 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I   AL++N  ++ A L G ++  AV+K +AYG G   + P++   GV    V S EE
Sbjct: 46  VEISAGALQHNIRTLQAELGGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAVASNEE 105

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
              +R   +T Q     L  +   ++ + +D   +     V    F  +L +    H   
Sbjct: 106 ARVVRASGFTGQLVRVRLASLGEVEDALQYDMEEL-----VGSAEFARQLDAIAERHGKT 160

Query: 126 LQVDTGFNRLGLSLQ-----------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L++    N  G+S             EAL  T    ++K  QL  +++H A  D      
Sbjct: 161 LRIHMALNSSGMSRNGVEMTTWSGRGEALQIT----DQKHLQLVALMTHFAVEDKDDVRK 216

Query: 175 NSVQL-ERFRTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
                 E+   LI H K   + L    A+S   L  P  H  + R G +L+G  D +   
Sbjct: 217 GLAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEAHLDMVRTGGALFG--DTVPTR 274

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              Q V+  ++ +  +    AG  V Y     L RDS +A   +GY+DGY    +     
Sbjct: 275 TEYQRVMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN---- 330

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                   G   I G+ VP++GK++M+  M D+TD   ++ G+ + +FG
Sbjct: 331 -------KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFG 372


>gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310]
 gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310]
          Length = 824

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 169/379 (44%), Gaps = 40/379 (10%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N  H  + L  + +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 465 LEVNLNAVVDNLNHFRSFLKQSTKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-HP 123
           GV LR     A I V+   +P     K +FD +L P + S   L    K     G++ +P
Sbjct: 525 GVTLRKNGITANIMVM---NPEMSSFKTLFDYDLEPEVYSFRLLEALVKAAEKEGITDYP 581

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----SHLACADDPSSHVNSVQ 178
             +++DTG +RLG      ++       ++L     II     SH   +D       S +
Sbjct: 582 VHIKLDTGMHRLGFDPNNDME----RLIERLKHQDAIIPRSVFSHFVGSDSDDFDDFSAR 637

Query: 179 LERFRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             +F       K ++A+        + +S+GI   P     + R G+ LYG   + N+  
Sbjct: 638 --QFALFDMASKQLQAAFQHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGIDPRNNQV- 694

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +  V T +  I+ +R   AG+ V Y  + K+  DS+IA   IGYADG    L    + H
Sbjct: 695 -INHVSTLKTTILQMRMVKAGDTVGYSRKGKIEHDSMIAAIPIGYADGLNRRLG---NRH 750

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                  G   + G     +G I MD+ M D+T  +  + GD ++IFG  + +  ++   
Sbjct: 751 -------GYCLVNGQRAYYVGNICMDVAMIDVT-GIDCKEGDQVEIFGDHLPVTVLSDTL 802

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++L  +  R  + Y
Sbjct: 803 ETIPYEVLTGVSNRVKRVY 821


>gi|256818882|ref|YP_003140161.1| alanine racemase [Capnocytophaga ochracea DSM 7271]
 gi|256580465|gb|ACU91600.1| alanine racemase [Capnocytophaga ochracea DSM 7271]
          Length = 369

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 165/383 (43%), Gaps = 46/383 (12%)

Query: 9   LKIDLTAL-KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVE 66
           L+I+LTAL KN  +  + L        VVK ++YG     IA  L   G+ ++F V    
Sbjct: 8   LEINLTALEKNVLYLKSRLKPTTLFLGVVKASSYGNNSVPIALHLQKKGLANYFAVAYTS 67

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG------- 119
           EG  LR       I VL   HP  + I FD     ++    + T YS+ ++         
Sbjct: 68  EGKALREAGITLPILVL---HP--QPINFD----DIVKYKLEPTLYSQRITKLFLEYAEK 118

Query: 120 ---VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              V +P  L+ +TG NRLG  L E  +      N     +    SHLA ++D +     
Sbjct: 119 HHLVKYPVHLKCNTGLNRLGFDLNEIDEVLALLKNNTTVTVKTAYSHLAASEDMNE--KE 176

Query: 177 VQLERFRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
               + +T I+  + I  + +        ++SGIL   +  F + R GI +YG  +    
Sbjct: 177 FTENQIKTFIAFQEKINKTFSHKVIYHQCNTSGILNYAHAQFDMVRCGIGMYGFANDAQL 236

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +  ++T ++ I  I     G+ + Y         +  A   +G+ADG          
Sbjct: 237 QQYLTPIMTLKSVISQIHTLQVGDSLGYNRGYIADHITKTATIPVGHADGIN-------- 288

Query: 289 EHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                ++  GKGF  I G   PI+G + MDM + D+T+ +  E G  + +F  D   + +
Sbjct: 289 ----RIYGKGKGFVFINGKKAPIIGNVCMDMILVDVTN-IPCEEGGEVIVFDKDHTAETL 343

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A ++GT +Y+L+  +  R  + Y
Sbjct: 344 AESAGTISYELITSMAHRIKRVY 366


>gi|297521078|ref|ZP_06939464.1| alanine racemase [Escherichia coli OP50]
          Length = 163

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 202 ILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEARIILIRKALAGELVSYG 257
           +LL P  HF   RPGI LYG +   ++S       Q V++  + +I +R+  AGE V YG
Sbjct: 1   MLLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYG 60

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
           G     RD+ + V A+GY DGYP          +PS   G    + G  VPI+G++ MDM
Sbjct: 61  GTWVSERDTRLGVVAMGYGDGYP--------RAAPS---GTPVLVNGREVPIVGRVAMDM 109

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ +R A  Y
Sbjct: 110 ICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLTSRVAMKY 161


>gi|229818028|ref|ZP_04448310.1| hypothetical protein BIFANG_03316 [Bifidobacterium angulatum DSM
           20098]
 gi|229784632|gb|EEP20746.1| hypothetical protein BIFANG_03316 [Bifidobacterium angulatum DSM
           20098]
          Length = 452

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 172/410 (41%), Gaps = 62/410 (15%)

Query: 11  IDLTALKNNWHSMNALSGNARTA----AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL A+++N   + A  G  ++      VVK +AYG G    A A    G          
Sbjct: 33  VDLKAMRDNMRHLVATVGGPQSGTAVMGVVKADAYGHGLLPSALAALAGGATWLGTAQSH 92

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQ----EKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           E + LR L     R  +L  ++ G     +++I +   + V S        +     G +
Sbjct: 93  EALLLRQLGIGPDRCHILTWVYNGTAVPFDELIDNDIDVSVGSLAGIDAIAAAARKLGKA 152

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADDP 170
               ++VD+GF R G        FT   F+  L +L  +            SHLA AD P
Sbjct: 153 ARVHVKVDSGFGRNG--------FTPEGFDAALAKLVQLAQEGVIEVIGQWSHLAVADSP 204

Query: 171 S--SHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG 221
                V S   Q+  F       K  GI  S   LA+++  L  P  HF+LTRPGI LYG
Sbjct: 205 DVPEFVESTERQIANFNAFTDRMKQAGIAPSIRHLANTAATLDRPEIHFELTRPGIGLYG 264

Query: 222 -------GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
                  GT    K  P   +   +A++  ++   AG  +SYG      +++  A+  +G
Sbjct: 265 YEPDPAMGTPNTYKLKPAMRL---QAQLGTVKDVEAGHGISYGRTYLTPQNTSTAIVPLG 321

Query: 275 YADGYPLTLSGLDSEHSPSV-FLGGKGFIKGYMVP----ILGKITMDMTMFDITDS---L 326
           YADG   + SG D E +  V   GG   +     P    + G++ MD  + D+  S   L
Sbjct: 322 YADGIHRSASGFDMEGAKHVDKPGGPVRVMTKQGPHIYHVSGRVCMDQFILDLHGSAAEL 381

Query: 327 SIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I  GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 GIAEGDTVELFGPGRGEEYGEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|325684688|gb|EGD26842.1| alanine racemase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 376

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 144/328 (43%), Gaps = 34/328 (10%)

Query: 9   LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+L A+K N   + + L    +   VVK NAYG G  ++AP +  AG   F V  ++E
Sbjct: 11  LHINLAAIKENTRQAKDHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGADGFCVAMLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSK-LMSCGVSHPYA 125
           G++LR       I VL G+ P +E  +   N I + +SS+  L    K L   G+     
Sbjct: 71  GLELRRAQIVKPILVL-GLQPAEEAALAAVNDISLPVSSLDWLKKAEKVLRKEGLQLKIH 129

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLII----SHLACADDPSSHVNSVQLE 180
           L +D+G  R+G S  E  DF   + N+ L G  +  +    +H A AD   +     Q++
Sbjct: 130 LAIDSGMGRIGFSEDE--DF--KAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHP 231
           RF+ + S    K     + +++ IL   +    + R GI LYG       G+  +  +  
Sbjct: 186 RFKHMESLLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTM 319
                  K  +     PI+G++ MD  M
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFM 321


>gi|293365913|ref|ZP_06612616.1| alanine racemase [Streptococcus oralis ATCC 35037]
 gi|307702317|ref|ZP_07639275.1| alanine racemase [Streptococcus oralis ATCC 35037]
 gi|291315591|gb|EFE56041.1| alanine racemase [Streptococcus oralis ATCC 35037]
 gi|307624120|gb|EFO03099.1| alanine racemase [Streptococcus oralis ATCC 35037]
          Length = 367

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 165/375 (44%), Gaps = 37/375 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPERTLKWAVVKANAYGHGAVAVAMAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVL-----YGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHP 123
           +LR      +I +L       I   +E   +D  L +  +  +  L      +S    H 
Sbjct: 72  ELRQAGLSKKILILGVSEIEAIDLAKE---YDITLTVAGLEWIQALLARETDLSGLTVH- 127

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G       +       +   ++  I +H A AD+ S    + QLERF+
Sbjct: 128 --LKIDSGMGRIGFRDSSEAEQAQALLQQYGARVEGIFTHFATADEESDDYFNQQLERFK 185

Query: 184 TLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
           T+++  K +      ++S+  L      F   R G ++YG     + ++  + ++  +T 
Sbjct: 186 TILASMKEVPDLVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPALTL 245

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV + G
Sbjct: 246 ESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVLVDG 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTTN 354
           +        PI+G+++MD     +     +  G  + +     G +I    VA   GT N
Sbjct: 300 QA------CPIVGRVSMDQITIRLPKIYPL--GTKVTLIGTNGGKEITATQVATYRGTIN 351

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  +  R  + Y
Sbjct: 352 YEVVCLLSDRIPREY 366


>gi|330719007|ref|ZP_08313607.1| alanine racemase [Leuconostoc fallax KCTC 3537]
          Length = 370

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 157/363 (43%), Gaps = 34/363 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++I  +A+++N   +   +G  +    VK N YGLG   ++ A    G     V  ++E
Sbjct: 10  RIEISKSAIQHNIEVVKQTAGATKLFLAVKSNGYGLGLVPVSQAAVAGGAYGLAVALMDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + LR     A I +L GI P  Q +++   N+I  + S+  L   ++ +S       ++
Sbjct: 70  ALALRDARITAPIIIL-GISPAEQAELMAVQNIITTVVSLDWLKSAAQNLSGEQRLAVSI 128

Query: 127 QVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            VDTG  R+G     +L E +D+     +K   + + + +H + +D         QLER+
Sbjct: 129 GVDTGMGRIGFRDRDALAETIDYLQQHQDKF--EYTGLFTHFSESDSSEVAYFHKQLERW 186

Query: 183 RTLISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYG---GTDKINKSHPMQT 234
             L       +    ++SG  +   YH       + R G  +YG      ++N    +Q 
Sbjct: 187 HALTDGLPAPKFYHVANSGAAM---YHADEVPHDVVRVGTVVYGMEPSRGELNDGKDLQP 243

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T  + I  +++  AGE +SY  +   T D  I    IGY DG+   + G +       
Sbjct: 244 VMTLRSEINFMKQLPAGEGISYSHKYTTTDDEWIGTVPIGYGDGWLRKMMGFNV------ 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
                  + G  VPI+G++ MD  M  +     +  G  +   G D  L++  L    T+
Sbjct: 298 ------IVDGQYVPIVGQVAMDQLMIRLPREYPL--GTTVTFIGRDGALENT-LEDVATH 348

Query: 355 YDL 357
            DL
Sbjct: 349 ADL 351


>gi|213419244|ref|ZP_03352310.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 234

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 106/220 (48%), Gaps = 20/220 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS------VPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +P IS+      V      + L +  ++ P 
Sbjct: 66  LRAGGITQPILLLEGF--------FDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
           F        G + S+A+S GILL P  HF   RPGI LYG
Sbjct: 178 FNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYG 216


>gi|319939813|ref|ZP_08014169.1| alanine racemase [Streptococcus anginosus 1_2_62CV]
 gi|319811026|gb|EFW07341.1| alanine racemase [Streptococcus anginosus 1_2_62CV]
          Length = 368

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 160/373 (42%), Gaps = 33/373 (8%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL A++ N   + A +  N    AVVK +AYG G   +  ++ +  V  F V++++E V
Sbjct: 13  VDLAAIRFNIKQITAHIPDNVEKWAVVKADAYGHGAVAVTQSIESI-VDGFCVSNIDEAV 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP--QLTFYSKLMSCG-VSHPYAL 126
           +LR      +I VL         +  +  +   ++S+    L   S +   G + H   +
Sbjct: 72  ELREAGISKKILVLGVSDVSAISLAIERKVTCTVASLEWLDLLLQSNIDVAGLIVH---I 128

Query: 127 QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++D+G  R+G    QEA +  H    +   Q+  I +H A AD+  +H    QL RF+ +
Sbjct: 129 KIDSGMGRIGFRDSQEAQEAIHR-LTQAGAQVEGIFTHFATADEADTHKFEAQLARFKEI 187

Query: 186 ISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEA 240
           +   + +   +  ++S+  L          R G  +YG       +   + M+  ++  +
Sbjct: 188 LGQLETVPPIVHASNSATTLWHAETVMNAVRLGDIIYGLNPSGRTLQLPYEMKPALSLVS 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ +++  AG  V YG          I    +GYADG+   + G D             
Sbjct: 248 ELVHVKQLEAGADVGYGATYTSENSQYIGTIPLGYADGWTRDMQGFDV------------ 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYD 356
            I G   PI+G+++MD     +  S  I  G  + + G      I   DVA   GT NY+
Sbjct: 296 LIDGQPCPIVGRVSMDQITVRLPQSYPI--GTPVVLIGESGKKSISATDVAEKRGTINYE 353

Query: 357 LLVRIGTRYAKFY 369
           ++  I  R  + Y
Sbjct: 354 IVCLISDRVPRVY 366


>gi|170016499|ref|YP_001727418.1| alanine racemase [Leuconostoc citreum KM20]
 gi|169803356|gb|ACA81974.1| Alanine racemase [Leuconostoc citreum KM20]
          Length = 370

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 163/376 (43%), Gaps = 41/376 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++I   ALKNN   +  +SG  +    VK NAYGLG    A A    GV    V  ++E
Sbjct: 10  QIEISQKALKNNVAVVKRVSGAEKIFLAVKSNAYGLGLIPTAKAAVAGGVYGLAVAIIDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + LR     A I +L GI P +  +++   +++  + S+  L   ++ ++       +L
Sbjct: 70  ALALRHERITAPILIL-GISPAEYAELMAVQHIMATVVSLDWLQEAAQYLTGEQRLHVSL 128

Query: 127 QVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            VDTG  R+G     SL EA+D+   H      +G    + +H A +D   +   ++QL+
Sbjct: 129 GVDTGMGRIGFRDRQSLSEAIDYVQAHRDIFDYVG----LATHFAESDSADTDYFNMQLQ 184

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYG---GTDKINKSHPM 232
           R+  L       E    ++SG  +   YH      ++ R G  LYG      ++     +
Sbjct: 185 RWHKLTDGLPEPEYYHVANSGAAM---YHANEVPHEVIRVGTVLYGVEPSRGELWDGREL 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V+   + +  +++  AGE +SY  +   + +  I    IGY DG+   ++G       
Sbjct: 242 APVMALRSEMNFVKELPAGEGISYSHKYTTSENEWIGTVPIGYGDGWLRKMTGFHV---- 297

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL----DDVAL 348
                    + G   PI+G++ MD  M  +       VG  + + G D  L    +DVA 
Sbjct: 298 --------IVDGQYAPIVGQVAMDQLMIRLPHEYP--VGTKVTLIGKDGGLENTIEDVAQ 347

Query: 349 ASGTTNYDLLVRIGTR 364
            +    ++++  +  R
Sbjct: 348 HADLAPWEIMTGMQDR 363


>gi|306826747|ref|ZP_07460049.1| alanine racemase [Streptococcus pyogenes ATCC 10782]
 gi|304431036|gb|EFM34043.1| alanine racemase [Streptococcus pyogenes ATCC 10782]
          Length = 366

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 166/374 (44%), Gaps = 33/374 (8%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S+   +    +T AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + ++     +   I+S+  +                ++V
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGLKVHVKV 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL   + ++   +S  +    +  I +H A AD+      + QL+ F+ LI+ 
Sbjct: 131 DSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFFKKLIA- 189

Query: 189 YKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAE 239
             G+E        ++S+  +   +  F   R GI  YG    G+D ++   P+Q  ++ E
Sbjct: 190 --GLEDKPRLVHTSNSATSIWHSDTIFNAVRLGIVSYGLNPSGSD-LSLPFPLQEALSLE 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ ++   AG+ V YG      +   +    IGYADG+   + G              
Sbjct: 247 SSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFSV----------- 295

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             + G    ++G+++MD     +  +  +  G  + + G     +I   D+A    T NY
Sbjct: 296 -LVDGQFCEMIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTINY 352

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +  R  + Y
Sbjct: 353 EVLCLLSDRIPRIY 366


>gi|269955481|ref|YP_003325270.1| alanine racemase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304162|gb|ACZ29712.1| alanine racemase [Xylanimonas cellulosilytica DSM 15894]
          Length = 441

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 177/408 (43%), Gaps = 58/408 (14%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DL A+++N  ++ A + ++   AVVK +AYG G    A A    G     V     
Sbjct: 14  RAVVDLEAVRDNVRALRAHAPSSALMAVVKADAYGHGLVPTAWAALAGGATWLGVAQAA- 72

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYSKLMSCGVSH 122
                    +A      GI PG  +I+        +  P++++   ++  +     GV+ 
Sbjct: 73  ---------EAVALRAAGIGPGDARILTWLHSPGVDFDPLVAADVDVSVAAPWALDGVAA 123

Query: 123 PYA---------LQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLI--ISHLACADDP 170
                       L+VDTG  R G++  +       +      G + ++   +HLA AD+P
Sbjct: 124 AARATGRVARVHLKVDTGLGRNGITPADLPAAAARAAALVAEGAIHVVGVWTHLAYADEP 183

Query: 171 SSHVNSVQL----ERFRTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGT 223
                + Q     +  RT+     GIE  L   A+S+  L  P  H+ L RPGIS+YG +
Sbjct: 184 GHPTIAAQRVVLDDAVRTV--EAAGIEVELRHAANSAATLTAPALHYDLVRPGISVYGFS 241

Query: 224 D----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
                    S  ++  +T +AR+  ++   AG+ VSY  +   T+ + + V  +GYADG 
Sbjct: 242 PVPGVATASSFGLRPAMTLQARLATVKNVEAGQGVSYAHRYVTTQATQLGVVPLGYADGI 301

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIK---------GYMVPILGKITMDMTMFDITDSLSIEV 330
           P   SG D      V++GG              G +V + G++ MD  + D+    + + 
Sbjct: 302 PRHASGGDDGPGGPVYVGGPAGAGIGPAGDGDGGRVVRVAGRVCMDQVVLDLGPYATEQP 361

Query: 331 GDYIQIFGPDIKL---------DDVALASGTTNYDLLVRIGTRYAKFY 369
           GD + +FG    L         +D A A+GT +Y+++ RI  R  + Y
Sbjct: 362 GDVVTLFGSTDGLAHSASVPSAEDWAAAAGTISYEIVTRIAPRIPRVY 409


>gi|213621090|ref|ZP_03373873.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 200

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
           SHLA AD P   +N  Q    +     +     SLA+S G+ L P +   L RPG++L+G
Sbjct: 1   SHLANADRPDHALNVYQHTLLQQAKKAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFG 60

Query: 222 GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
              +   S P++   T    I+ ++    G  + YG     TR   IA  + GYADG P 
Sbjct: 61  -VAQPWFSTPLKPAFTLTLTILRVQDVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPR 119

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341
            L        P+         +G  +P+LG++ MD  M D +  +    GD ++  G   
Sbjct: 120 NL------RPPAGVCW-----RGVRLPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQ 167

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367
            L++VA A  T  Y+++ R+G R+ +
Sbjct: 168 TLEEVAAACDTIPYEIMARLGARFRR 193


>gi|270290192|ref|ZP_06196418.1| alanine racemase [Pediococcus acidilactici 7_4]
 gi|270281729|gb|EFA27561.1| alanine racemase [Pediococcus acidilactici 7_4]
          Length = 375

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 150/373 (40%), Gaps = 25/373 (6%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL +D  A++ N    +  L   +   AV+K +AYG G   +A     AG   F V  ++
Sbjct: 10  RLVVDAAAIRQNVKKEIERLDPQSELFAVIKADAYGHGLIPVARYTEQAGATGFCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E + LR       I VL   +     +  + N+   +  V  LT  +  ++    HP   
Sbjct: 70  EALTLREAGFAEPILVLGITNVKWAALAAEKNVSLTVGDVEWLTKAAPQLT--AEHPLKV 127

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFR 183
            L +DTG  R+G    + L+       K        + +H A AD+      ++Q++RF 
Sbjct: 128 HLALDTGMGRIGFQESDGLNQAAELLIKDPRFVFEGVFTHFATADEKDPTYFNLQVDRFH 187

Query: 184 TLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTA 238
            L+     K     +++++  L     +  L R G+ +YG       +   + +Q  +T 
Sbjct: 188 KLVDTLPEKPRYVHVSNTATSLWHAACNGNLIRFGVGIYGMNPSGTVLEPPYDLQPAMTL 247

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+R+   +    G  VSYG      +D  I    IGYADGYP  L G             
Sbjct: 248 ESRLSFSKLLKKGRSVSYGATYTAEQDEWIGTIPIGYADGYPRCLQGFHV---------- 297

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI--QIFGPDIKLDDVALASGTTNYD 356
              + G+   I+G++ MD  M  +           +  Q  G  I + D+A   GT NY+
Sbjct: 298 --LVDGHFCEIVGRVCMDQLMIRLPHEYPAGTPVILAGQSQGKSISMTDIADYVGTINYE 355

Query: 357 LLVRIGTRYAKFY 369
           +      R  + Y
Sbjct: 356 ITCGFTERLPRVY 368


>gi|254369512|ref|ZP_04985523.1| hypothetical protein FTAG_01386 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122466|gb|EDO66601.1| hypothetical protein FTAG_01386 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 365

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 172/379 (45%), Gaps = 46/379 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  + DFF  +V   
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHD--LVDFF--AVANS 59

Query: 69  VKLRLYTPQARIFVL-YGI--HPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSHP 123
           ++    T  A+  VL +G+  +   EK+I +   + +     + +L   +K +   V   
Sbjct: 60  LEAFRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKV--- 116

Query: 124 YA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           YA + ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF
Sbjct: 117 YAHININTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRF 176

Query: 183 RTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHPM 232
            +++   KG+       L++S G L      + + RPGI  YG       D+ I +  P+
Sbjct: 177 DSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPI 236

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             +++   +II +++   GE V Y    +      +AV  IGY DG+P            
Sbjct: 237 ARLLSKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE---------- 283

Query: 293 SVFLGGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD---- 345
              LG +GF  I     P+ G+++MD +T+    +   ++VGD +++     +  +    
Sbjct: 284 ---LGDRGFVNINDVTYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFS 340

Query: 346 VALASGTTNYDLLVRIGTR 364
           +A  + T  YD++  +  R
Sbjct: 341 IAKQTNTIEYDIMSTLNDR 359


>gi|163938242|ref|YP_001643126.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
 gi|229165223|ref|ZP_04293015.1| Alanine racemase [Bacillus cereus AH621]
 gi|163860439|gb|ABY41498.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
 gi|228618255|gb|EEK75288.1| Alanine racemase [Bacillus cereus AH621]
          Length = 389

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEDAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A +D+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATSDEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G+       A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       K  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------KVLVNGERVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|197303364|ref|ZP_03168403.1| hypothetical protein RUMLAC_02086 [Ruminococcus lactaris ATCC
           29176]
 gi|197297362|gb|EDY31923.1| hypothetical protein RUMLAC_02086 [Ruminococcus lactaris ATCC
           29176]
          Length = 387

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 164/383 (42%), Gaps = 43/383 (11%)

Query: 11  IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEG 68
           IDL A+  N   M    G + +  AV+K + YG G   +A        +  + V  + E 
Sbjct: 11  IDLDAIAYNMEQMKKRIGEDGKLIAVIKTDGYGHGAVPLAKMFEEMPYIWGYAVACMGEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP----- 123
             LR    +  I VL  + P + + + +  +        +   Y++ M+ G+S       
Sbjct: 71  GVLREQGIKKPILVLGCVFPDEYEEMVEKEI--------RAAVYTEEMARGMSEAAQRLG 122

Query: 124 ----YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQ 178
               + +++DTG  R+G  + E    +    ++    Q   + +H A AD+        Q
Sbjct: 123 KTAYFHIKIDTGMGRIGFPVTEESASSIERISRLPNVQTEAMFTHFAKADELDKSYTLKQ 182

Query: 179 LERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH- 230
            E+F  +    +     +      +S+GI+  P+    + R GIS+YG   +D ++++  
Sbjct: 183 HEKFLWMKELMEERNVPIRYFDCDNSAGIIDFPDLKHDIARAGISIYGMYPSDDVDQNAV 242

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +   + +  +++   G  +SYGG     +   IA   +GY DGYP +LS      
Sbjct: 243 SLRPALRLVSHVSFVKEVGKGTSISYGGTYITEKKMKIATIPVGYGDGYPRSLSN----- 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                  G   I G    ILG++ MD  M D+T+   +   D + + G D    I+++D+
Sbjct: 298 ------KGYVLIHGKKARILGRVCMDQFMVDVTEIPDVAFMDEVILIGRDQEEQIQVEDL 351

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  SG  NY+ +  +  R  + Y
Sbjct: 352 AELSGRFNYEFVCCLSKRIPRVY 374


>gi|229055082|ref|ZP_04195513.1| Alanine racemase [Bacillus cereus AH603]
 gi|228721266|gb|EEL72791.1| Alanine racemase [Bacillus cereus AH603]
          Length = 389

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEDAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A +D+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATSDEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S  K  G+       A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       K  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------KVLVNGERVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|289167441|ref|YP_003445710.1| alanine racemase [Streptococcus mitis B6]
 gi|288907008|emb|CBJ21842.1| alanine racemase [Streptococcus mitis B6]
          Length = 367

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 168/377 (44%), Gaps = 41/377 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVTVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-----CGVSHPY 124
           +LR      +I +L G+   + + +       +  +V  L +   L+       G++   
Sbjct: 72  ELRQAGLSKKILIL-GV--SEIEAVSLAKEYDITLTVAGLEWIQALLDKEADLTGLT--V 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++D+G  R+G       +   +   +    +  I +H A AD+ S    + QLERF+T
Sbjct: 127 HLKIDSGMGRIGFREAGEAEQAQDLLQQHGAYVEGIFTHFATADEESDTYFNTQLERFKT 186

Query: 185 LISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVV 236
           ++   KG+ E   AS+S   L   +H    F   R G ++YG     + ++  + +   +
Sbjct: 187 ILESMKGLPELVHASNSATTL---WHAETIFNAVRMGDAMYGLNPSGEVLDLPYGLTPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+ ++ ++    G  + YG   +   + +IA   IGYADG+   +         SV +
Sbjct: 244 TLESALVHVKTVPVGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVLV 297

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G+        PI+G+++MD     +     +  G  + + G     +I    VA   GT
Sbjct: 298 DGQA------CPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  +  R  + Y
Sbjct: 350 INYEVVCLLSDRIPREY 366


>gi|304405127|ref|ZP_07386787.1| alanine racemase [Paenibacillus curdlanolyticus YK9]
 gi|304346006|gb|EFM11840.1| alanine racemase [Paenibacillus curdlanolyticus YK9]
          Length = 391

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 163/381 (42%), Gaps = 29/381 (7%)

Query: 8   RLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R +I L AL+ N  +   A+       A VK NAYG G   IA      GV    V  ++
Sbjct: 9   RAEISLDALRVNLTAFRQAIPEGMLLMASVKANAYGHGAVGIAREAEAFGVDYMGVAFLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I VL  +      +  D ++   +     L   + L   G      +
Sbjct: 69  EAIQLRQAGITKPILVLGYVPAAGLAVARDYDITIALFRYDILEAAAALPENGKQLAVHI 128

Query: 127 QVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++D+G  RLG L   EA  F   +   K  ++  + +H + AD+        Q ERF  +
Sbjct: 129 KIDSGMGRLGMLPGLEAERFIERALTVKQLRVEGLFTHYSKADELDKAYTEQQYERFNGV 188

Query: 186 ISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVVT 237
           + + +   +  SL   A+S+  +  PN+   + R GI +YG   + ++N+    ++ V++
Sbjct: 189 VDYVRNNALPISLFHAANSATGIDTPNWGHGMLRLGIGMYGLYPSAQVNQKEIALEPVMS 248

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  + + + A     +SYG +   +    I    IGYADG+   LSG            
Sbjct: 249 LKTAVAMTKTAPEHWGISYGARYVTSGQERIGTLPIGYADGFSRMLSG-----------K 297

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDS----LSIEVGDYIQIFGPD----IKLDDVALA 349
            +  ++G  VPILG I MD  M  +  +    + ++  + + I G      I  DD+A  
Sbjct: 298 AEALVRGTRVPILGTICMDQCMIALDPAEQGGVQVQADEEVVIMGRQGDEVITADDIADK 357

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
            GT NY++   +  R  + + 
Sbjct: 358 LGTINYEVTCMLAARVPRVFV 378


>gi|304385540|ref|ZP_07367884.1| alanine racemase [Pediococcus acidilactici DSM 20284]
 gi|304328044|gb|EFL95266.1| alanine racemase [Pediococcus acidilactici DSM 20284]
          Length = 375

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 150/373 (40%), Gaps = 25/373 (6%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL +D  A++ N    +  L   +   AV+K +AYG G   +A     AG   F V  ++
Sbjct: 10  RLVVDAAAIRQNVKKEIERLDHQSELFAVIKADAYGHGLIPVARYTEQAGATGFCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E + LR       I VL   +     +  + N+   +  V  LT  +  ++    HP   
Sbjct: 70  EALTLREAGFAEPILVLGITNVKWAALAAEKNVSLTVGDVEWLTKAAPQLT--AEHPLKV 127

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFR 183
            L +DTG  R+G    + L+       K        + +H A AD+      ++Q++RF 
Sbjct: 128 HLALDTGMGRIGFQESDGLNQAAKLLIKDPRFVFEGVFTHFATADEKDPTYFNLQVDRFH 187

Query: 184 TLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTA 238
            L+     K     +++++  L     +  L R G+ +YG       +   + +Q  +T 
Sbjct: 188 KLVDTLPEKPRYVHVSNTATSLWHAACNGNLIRFGVGIYGMNPSGTVLEPPYDLQPAMTL 247

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+R+   +    G  VSYG      +D  I    IGYADGYP  L G             
Sbjct: 248 ESRLSFSKLLKKGRSVSYGATYTAEQDEWIGTIPIGYADGYPRCLQGFHV---------- 297

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI--QIFGPDIKLDDVALASGTTNYD 356
              + G+   I+G++ MD  M  +           +  Q  G  I + D+A   GT NY+
Sbjct: 298 --LVDGHFCEIVGRVCMDQLMIRLPHEYPAGTPVILAGQSQGKSISMTDIADYVGTINYE 355

Query: 357 LLVRIGTRYAKFY 369
           +      R  + Y
Sbjct: 356 ITCGFTERLPRVY 368


>gi|239813248|ref|YP_002942158.1| alanine racemase [Variovorax paradoxus S110]
 gi|259710076|sp|C5CX88|ALR_VARPS RecName: Full=Alanine racemase
 gi|239799825|gb|ACS16892.1| alanine racemase [Variovorax paradoxus S110]
          Length = 366

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 166/367 (45%), Gaps = 31/367 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +   AL++N       + +AR  AVVK NAYG G E++   L   G   F +  + E  +
Sbjct: 9   VHTAALRHNLDRARRAAVDARVWAVVKANAYGHGIERVYEGLR--GADGFALLDLAEAER 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +R    +  + +L G+   ++ ++    +L   +    Q+   +   +      + L+++
Sbjct: 67  VRALGWRGPVLLLEGVFDARDLELCSRLDLWHTVHCDEQIDMLAAHKTLKPQRVF-LKMN 125

Query: 130 TGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G NRLG + +     +T  +   ++ ++SL+ +H + AD      +  QLE F      
Sbjct: 126 SGMNRLGFAPERFGSAWTRLNALPQVDEISLM-THFSDADGARGIAH--QLEVFERATHD 182

Query: 189 YKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKI---NKSH-PMQTVVTAEARII 243
             G E S+A+S+  L           RPGI LYG        + +H  +Q  +T   ++I
Sbjct: 183 LLG-ERSIANSAATLRHARQTRGDWVRPGIVLYGSAPDFPEHDAAHWQLQPTMTLSTKLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            I+   AG+ + YG          I VAA+GYADGYP         H  +   G    + 
Sbjct: 242 GIQTLKAGDTIGYGSNFTAEGPLTIGVAAVGYADGYP--------RHCNT---GTPVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALASGTTNYDL 357
           G    ++G+++MDM   D+T     + G  + ++G        + +D+VA A+GT  Y+L
Sbjct: 291 GVRTRMVGRVSMDMITVDLTPVPEAKFGTEVTLWGRSAVSGAVLPIDEVAQAAGTVGYEL 350

Query: 358 LVRIGTR 364
           +  +  R
Sbjct: 351 MCAVAPR 357


>gi|306824745|ref|ZP_07458089.1| alanine racemase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432956|gb|EFM35928.1| alanine racemase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 367

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 165/380 (43%), Gaps = 47/380 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M +   N     AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IRLGAIRQNIQQMGSHIPNGTLKFAVVKANAYGHGAVAVATAIQDI-VDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVL-----YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---VS 121
           +LR      +I +L       +   +E   +D  L     +V  L +   L+        
Sbjct: 72  ELRQAGINKKILILGVSELEAVSLAKE---YDITL-----TVAGLEWIQALLDKEADLTD 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L++D+G  R+G       D   +   +   ++  I +H A AD+ S    + QLE 
Sbjct: 124 LTVHLKIDSGMGRIGFRDASEADLVQDLLKQHGARVEGIFTHFATADEESDTYFNQQLEC 183

Query: 182 FRTLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQ 233
           F+ +++  K + E   AS+S   L   +H    F   R G S+YG     + +N  + + 
Sbjct: 184 FKAILASMKEVPELVHASNSATTL---WHAETIFNAVRMGDSMYGLNPSGEVLNLPYDLT 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         S
Sbjct: 241 PALTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------S 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
           V + G+        PI+G+++MD     +     +  G  + + G     +I    VA  
Sbjct: 295 VLVDGQA------CPIVGRVSMDQITIRLPKIYPL--GTKVTLIGSNGDQEITATQVATY 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  +  R  + Y
Sbjct: 347 RGTINYEVVCLLSDRIPREY 366


>gi|126640203|ref|YP_001083187.1| alanine racemase 2 PLP-binding, catabolic [Acinetobacter baumannii
           ATCC 17978]
          Length = 343

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 162/364 (44%), Gaps = 58/364 (15%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
           N++  AVVK NAYG G E++  A   A    F +  ++E  ++R       I +L GI  
Sbjct: 3   NSKVFAVVKANAYGHGIERVYEAFKAA--DGFALLDLDEAKRIRALGWTGPILLLEGIFS 60

Query: 89  GQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD------TGFNRLGLSL 139
            Q+  +FD     L   I S  Q+ +  +       HPY  Q D      +G NRLG   
Sbjct: 61  PQD--LFDCVQYQLSFTIHSEAQIEWVEQ-------HPYPAQFDVFLKMNSGMNRLGFKP 111

Query: 140 Q---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV--QLERFRTLISHYKGIEA 194
           Q   +A +  +N  N  + +++ ++ H + AD        +  Q+  F  ++    G E 
Sbjct: 112 QHYVQAWERLNNLAN--VAKITHMM-HFSDADGDRFGQQGIDYQITAFEEIVKDLPG-ER 167

Query: 195 SLASSSGILLGPNYHFQL----TRPGISLYGGTDKINKSHP-----MQTVVTAEARIILI 245
           S+++S+ IL    Y  QL     R GI LYG +     +H      +Q  ++  + II +
Sbjct: 168 SVSNSAAIL---RYQDQLKSDYVRSGIMLYGSSPDY-PTHSIADWGLQPTMSLRSEIISV 223

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +     E V YG      +   I + A GYADGY           SP+   G    +   
Sbjct: 224 QHLEPNESVGYGSNFVAEQPMTIGIVACGYADGY--------QRISPT---GTPVLVDSV 272

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVR 360
               +G+++MDM   D+T   S +VG  + ++G       + +DDVA++SGT  Y+L+  
Sbjct: 273 RTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSGTVGYELMCA 332

Query: 361 IGTR 364
           +  R
Sbjct: 333 VTAR 336


>gi|269928988|ref|YP_003321309.1| alanine racemase [Sphaerobacter thermophilus DSM 20745]
 gi|269788345|gb|ACZ40487.1| alanine racemase [Sphaerobacter thermophilus DSM 20745]
          Length = 408

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 153/377 (40%), Gaps = 29/377 (7%)

Query: 11  IDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A   N  +  + L   A   AV+K NAYG G      A   AG     V  +EE +
Sbjct: 20  IDLDAFAGNIAYVRSQLPEGAEVIAVIKANAYGHGLVPCGRAALAAGASRLAVARIEEAL 79

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQV 128
            LR     A I VL   +P   +   ++ +   + S   L      +   +   P  L+V
Sbjct: 80  LLRAAGVVAPILVLSPANPALARQAAESGIALAVGSATGLNRLLDALGDDLPPLPVHLKV 139

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF--RTLI 186
           DTG +R G+  +  ++       +   ++  + +H A AD     V   Q  RF      
Sbjct: 140 DTGMHRFGVEPEGVVELARALAREPRVRVEGVFTHFATADAADDRVLQEQTRRFAAAVQA 199

Query: 187 SHYKGIEASL---ASSSGILLG----PNYHFQLT-RPGISLYG--GTDKINKSHPMQTVV 236
               G++  L   A+S+ IL G    P     +  R G+ LYG   + ++    P++ V+
Sbjct: 200 LAAAGLQPPLVHMANSAAILRGVVEIPAPRATIAVRAGLILYGLNPSRELPLPAPIRPVL 259

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               R+  +     GE +SYG      R    A   IGYADG    LS            
Sbjct: 260 RLVTRVGQVFTVPPGEGISYGWSYIAERPIRCANLPIGYADGLVRLLSNQ---------- 309

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--GPD--IKLDDVALASGT 352
            G   + G + PI G+I MD T+ ++  +  +  GD   +   G D  +  D  A  +GT
Sbjct: 310 -GWAVVGGAVCPIRGRICMDQTVIEVEAAPDVAEGDEAVLLSDGRDGAMTADQAAALAGT 368

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  +  R  + Y
Sbjct: 369 INYEIVSALAARIPRVY 385


>gi|328676829|gb|AEB27699.1| Alanine racemase [Francisella cf. novicida Fx1]
          Length = 365

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 162/375 (43%), Gaps = 38/375 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           L+I    L+NN   +    G+A+    VK NAYG G E I    ++  + DFF V +V E
Sbjct: 4   LEISAQTLRNNIRIIKEYVGSAKICFPVKANAYGHGLELIVE--HSHDLVDFFAVANVLE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
             ++ L   +  + +   I       I   N+   I     +    K        P+  +
Sbjct: 62  AFRV-LDVVEKPVMIFGVIEYNYIDRILSKNIRVSIQDYNDIEKLEKFAKYYNKKPFVHV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF  ++
Sbjct: 121 NLNTGMNRMGVDYSDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDGIV 180

Query: 187 SHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHPMQTVV 236
              KG+       L++S G L      + + RPGI  YG       D+ I +  P+  ++
Sbjct: 181 EFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRAIREIKPIARLL 240

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   +II +++   GE V Y    +      +AV  IGY DG+P               L
Sbjct: 241 SKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE-------------L 284

Query: 297 GGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           G +GF  I   M P+ G+++MD +T+    +   ++VGD +++     +  +    +A  
Sbjct: 285 GDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQ 344

Query: 350 SGTTNYDLLVRIGTR 364
           + T  YD++  +  R
Sbjct: 345 TNTIEYDIMSTLNDR 359


>gi|290891219|ref|ZP_06554281.1| hypothetical protein AWRIB429_1671 [Oenococcus oeni AWRIB429]
 gi|290479183|gb|EFD87845.1| hypothetical protein AWRIB429_1671 [Oenococcus oeni AWRIB429]
          Length = 386

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 166/383 (43%), Gaps = 40/383 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEE 67
           + +DL A  +N   +   +   +  AV+K + YGLG   +A A       D   V++++E
Sbjct: 11  VSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            ++LR       I+VL        K+  D +   ++ ++P L +   L     +   +L 
Sbjct: 71  ALELRQADLTLPIWVLGAWDYSDLKLFIDHD---IVITIPSLAWLQNLPDFEGTLKVSLA 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV---QLERF 182
           +DTG  R+G    + +       +K   QL L  + +H A AD+      +    QL R+
Sbjct: 128 IDTGMTRIGFDKADEISAAKKIIDKN-PQLDLFSVYTHFATADEAGEKSKAYFEEQLRRW 186

Query: 183 RTLISHYKGIEASL---ASSSGILL---GPNYHFQLTRPG-----ISLYGGTDKINKSHP 231
           + L  + +G + SL   A+S+  +     P   F   RPG     +++  G  K+  +  
Sbjct: 187 QELTIN-QGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPPNLH 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ + +  + I  +R     + +SYG  +++  D  +A    GY DG+      L     
Sbjct: 246 LERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGW------LRRMQK 299

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
            SV + GK  +      I+G+ITMD TM  +     I  G  + + G D    I +++VA
Sbjct: 300 SSVIINGKRML------IIGRITMDQTMVKLDRKYPI--GTRVTLIGKDGGEQITVEEVA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
             S T   ++   +  R  + YT
Sbjct: 352 NYSHTIVDEIQTTLAPRIKRIYT 374


>gi|229083529|ref|ZP_04215867.1| Alanine racemase [Bacillus cereus Rock3-44]
 gi|228699783|gb|EEL52430.1| Alanine racemase [Bacillus cereus Rock3-44]
          Length = 389

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M  + F R   ++++L A+ NN  H    +  N    AVVK N+YG     +A     AG
Sbjct: 1   MGESSFYRDTWVEVNLDAIYNNVTHIKKMIPENVEVFAVVKGNSYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    ++ 
Sbjct: 61  ATRLAVAFLDEALVLRRSGITAPILVLGPSSPRVVNVAAENDVALTVFQREWVEEALEIW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
              V   + L  D+G  R+G+  +E L  F  +        L  + +H + AD+  +   
Sbjct: 121 DSSVPLRFHLNFDSGMGRIGIREREELKGFLRSLEEAPFFDLEGVYTHFSTADEVGTSYF 180

Query: 176 SVQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTD--KINK 228
             Q   F   +S  +G          A+S+  +      F   R GI +YG T   +I  
Sbjct: 181 DKQYNTFLKQLSWLQGFGVDPKFIHAANSAATMRFHGITFNAVRIGIVMYGLTPSLEIFP 240

Query: 229 SHPMQ--TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
             P+Q    ++    +  I++ + G+ +SYG   +   +  IA   IGYADG+   L G 
Sbjct: 241 FIPIQLEPALSLHTTVSHIKQVIKGDGISYGVTYRTKIEEWIATVPIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       K  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------KVLVDGERVPIVGRVTMDQLMLHL--PYEVPLGTKVTLIGKQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
            ++VA  SGT NY+++  I  R  + +
Sbjct: 347 ANEVAEYSGTINYEIITTISFRVPRIF 373


>gi|282883163|ref|ZP_06291762.1| alanine racemase [Peptoniphilus lacrimalis 315-B]
 gi|281296975|gb|EFA89472.1| alanine racemase [Peptoniphilus lacrimalis 315-B]
          Length = 388

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 153/345 (44%), Gaps = 55/345 (15%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           ++ N++   V+K + Y  G  ++  A    G+  F V ++ EG+ LR +     I +L G
Sbjct: 29  INKNSKIMCVIKSDGYRAGALELTEASVKFGINYFGVATLSEGISLRKHFKDINILIL-G 87

Query: 86  IHPG---QEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLG-LSLQ 140
             P    ++   +D  ++P I S      Y+++    G      L +DTG NR+G +  +
Sbjct: 88  YTPSYLLEDLCKYD--IMPNIYSYDNCKDYNEICKKYGKVGKIHLSIDTGMNRVGFIPGK 145

Query: 141 EAL-DFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTLISHYKGIEAS-- 195
           EA  D    S   KL  + +  + SH A AD           ++F T  S  K IE +  
Sbjct: 146 EAFFDIIKIS---KLSNIKIDGVFSHFAKADVDEDFTK----KQFDTFTSFTKEIENAGV 198

Query: 196 ------LASSSGILLGPNYHFQLTRPGI---SLYGGTDKINKSHPMQTVVTAEARIILIR 246
                 +++S+ IL    Y   + RPG     LY G  K ++  P++  +   A I  I+
Sbjct: 199 NLGLKHISNSASILKHREYDLDMVRPGAIMHGLYKGFFK-DEKLPLKKDLQVFAMIANIK 257

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G+ VSYG +   T+D+ +    +GYADG+P  LSG       SV +GGK       
Sbjct: 258 TIKKGQGVSYGHKYIATKDTKVVTIPLGYADGFPRILSG-----KFSVLIGGK------K 306

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
            P +G I MD  M D T              G D K++DVA+  G
Sbjct: 307 CPQIGNICMDQFMVDAT--------------GIDCKINDVAVLLG 337


>gi|145225510|ref|YP_001136188.1| alanine racemase [Mycobacterium gilvum PYR-GCK]
 gi|145217996|gb|ABP47400.1| alanine racemase [Mycobacterium gilvum PYR-GCK]
          Length = 383

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 163/387 (42%), Gaps = 52/387 (13%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+ +N   +   +G A   AVVK + YG G   +A A   AG  +  V +++E + 
Sbjct: 16  IDLDAIAHNVGVLRDRAGRAAVMAVVKADGYGHGATAVARAALAAGATNLGVATLDEALS 75

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK---------LMSCGVS 121
           LR     A   VL  +HP        T+  P + +  ++   S+         +   G +
Sbjct: 76  LRRDGVTA--PVLSWLHPPG------TDFTPAVQADIEVALSSRRQLDDLLRAVARTGRT 127

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSH 173
               ++ DTG +R G+S  +     H      L +           ++SHLA  D P   
Sbjct: 128 ATVTVKADTGLSRNGVSPAD-----HPGLVSALARAQTDGAVTVHGLMSHLAHGDVPDHP 182

Query: 174 VNSVQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
            N  Q  R   + S  +    +     L +S   L  P+  F + RPGI++YG T    +
Sbjct: 183 FNDEQARRLTEMASEARSAGVAYDVVHLCNSPAALTRPDLAFDMVRPGIAVYGQTPIPER 242

Query: 229 SH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++  +T +  + L+R   AG+ VSYG      RD+ +A+   GYADG    LS   
Sbjct: 243 GDMGLRPAMTVKCPVALVRSVRAGDGVSYGHTWLAPRDTTLALIPAGYADGVFRALS--- 299

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIK 342
                + F   +  I G   P +G++ MD  + D+    + +  GD   +FGP    +  
Sbjct: 300 -----NRF---EVTINGRRYPNVGRVCMDQFVVDLGPGPVDVAEGDDAILFGPGDDGEPT 351

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             D A   GT NY+++     R  + Y
Sbjct: 352 AQDWADLLGTINYEVVTSPRGRIVRGY 378


>gi|121592611|ref|YP_984507.1| alanine racemase [Acidovorax sp. JS42]
 gi|166919544|sp|A1W2F6|ALR_ACISJ RecName: Full=Alanine racemase
 gi|120604691|gb|ABM40431.1| alanine racemase [Acidovorax sp. JS42]
          Length = 365

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 154/352 (43%), Gaps = 46/352 (13%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AVVK NAYG G E++   L  A    F +  + E  ++R    +  I +L G+  P   +
Sbjct: 32  AVVKANAYGHGIERVFEGLRAA--DGFALLDLAEAERVRALGWRGPILLLEGVFEPRDLE 89

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
           +     L   +    Q+ + +   +  V H   L++++G NRLG        FT   +  
Sbjct: 90  LCSRLGLWHAVHCDAQIDWLAAHKT-QVPHRVFLKMNSGMNRLG--------FTPERYRS 140

Query: 153 KLGQLSLI--------ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL 204
              +L+ +        ++H + AD P    + VQ   F+       G E  +A+S+ +L 
Sbjct: 141 AWARLNALPQVDEISCMTHFSDADGPRGIAHQVQA--FQAATQDLPG-ERCIANSAALLR 197

Query: 205 -GPNYHFQL--TRPGISLYGGT----DKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
            G +   +L   R GI LYG      ++      +Q  +T  +RII +++  AG+ V YG
Sbjct: 198 HGGDAQVRLDWVRAGIVLYGSAPDHPERRAADWDLQPTMTLASRIIGVQQLQAGDTVGYG 257

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
            +        I + A GYADGYP         H  +   G    + G     +G+++MDM
Sbjct: 258 SRFTAQGPLGIGIVACGYADGYP--------RHCDT---GTPVLVNGVRTRTIGRVSMDM 306

Query: 318 TMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVRIGTR 364
              D+T      +G  + ++G       + +D+VA A GT  Y+L+  +  R
Sbjct: 307 LAVDLTPVPGAGLGAEVTLWGRAANGAVLPIDEVAQAGGTIGYELMCALAPR 358


>gi|315224260|ref|ZP_07866097.1| alanine racemase [Capnocytophaga ochracea F0287]
 gi|314945763|gb|EFS97775.1| alanine racemase [Capnocytophaga ochracea F0287]
          Length = 369

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 162/379 (42%), Gaps = 38/379 (10%)

Query: 9   LKIDLTAL-KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVE 66
           L+I+LTAL KN  +  + L        VVK ++YG     IA  L   G+ ++F V    
Sbjct: 8   LEINLTALEKNVLYLKSRLKPTTLFLGVVKASSYGNNSVPIALHLQKKGLANYFAVAYTS 67

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT----NLIPVISS--VPQLTFYSKLMSCGV 120
           EG  LR       I VL   HP  + I FD      L P + S  + +L          V
Sbjct: 68  EGKALREAGITLPILVL---HP--QPINFDDIVKYKLEPTLYSQRITKLFLEYAEKHHLV 122

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            +P  L+ +TG NRLG  L E         N     +    SHLA ++D +         
Sbjct: 123 KYPVHLKCNTGLNRLGFDLNEIDQELTLLKNNTTVTVKTAYSHLAASEDMNE--KEFTEN 180

Query: 181 RFRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           + +T I+  + I  + +        ++SGIL   +  F + R GI +YG  +       +
Sbjct: 181 QIKTFIAFQEKINKTFSHKVIYHQCNTSGILNYAHAQFDMVRCGIGMYGFANDAQLQQYL 240

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             ++T ++ I  I     G+ + Y         +  A   +G+ADG              
Sbjct: 241 TPIMTLKSVISQIHTLQVGDSLGYNRGYIADHITKTATIPVGHADGIN------------ 288

Query: 293 SVFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
            ++  GKGF  I G   PI+G + MDM + D+T+ +  E G  + +F  D   + +A ++
Sbjct: 289 RIYGKGKGFVFINGKKAPIIGNVCMDMILVDVTN-IPCEEGGEVIVFDKDHTAETLAESA 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+L+  +  R  + Y
Sbjct: 348 GTISYELITSMAHRIKRVY 366


>gi|15896574|ref|NP_349923.1| alanine racemase [Clostridium acetobutylicum ATCC 824]
 gi|20137413|sp|Q97DY9|ALR2_CLOAB RecName: Full=Alanine racemase 2
 gi|15026412|gb|AAK81263.1|AE007830_4 Alanine racemase [Clostridium acetobutylicum ATCC 824]
 gi|325510735|gb|ADZ22371.1| Alanine racemase [Clostridium acetobutylicum EA 2018]
          Length = 395

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 146/331 (44%), Gaps = 27/331 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E  + +I+L+ LK N+  +   L  N +  AV+K +AYG G   IA  L N     F V 
Sbjct: 27  EVNKAEINLSQLKRNFDIIQGFLKPNTKFMAVLKGDAYGHGIRPIAKELINLKCDVFGVV 86

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-H 122
            + E   LR    +  I +L  I P Q   +   N+IP++ S   +    +  S   +  
Sbjct: 87  RLIEAFTLRKAGIKTPIMLLAPISPSQAAWVIRYNIIPMVDSEEIVEALDQSASQNDTIV 146

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLER 181
              ++++TG NR G++ + A+ F      K L  Q+  + +H    D      +  Q+E 
Sbjct: 147 KLHVKINTGLNRYGVNPENAVKFIREIHEKYLHVQVDGVYTHFQDPDYNPDFTHK-QIEC 205

Query: 182 FRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
           F  +I   +  +        A+S+GI+  P  H+ + R G  L+G      + N    ++
Sbjct: 206 FNNIIFQLQKQKLRPRIIHAANSTGIIRYPEAHYDMVRCGTLLFGLEHEQGQRNMPKGIK 265

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           T++  + RI+ +R   AGE   YG      +DS +A+ A GY DG         S     
Sbjct: 266 TLMELKGRIMKVRTIRAGEAGGYGSTFVAKKDSKVAIIAFGYGDGI--------SRGWKE 317

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITD 324
           V + GK       VP++    MD  M DI++
Sbjct: 318 VLVAGK------RVPVVNYF-MDGLMVDISN 341


>gi|10802761|gb|AAG23602.1|AF244653_1 alanine racemase [Carboxydothermus hydrogenoformans]
          Length = 232

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 20/232 (8%)

Query: 109 LTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
           L +  +L     +  Y L++DTG  R+G   +E L+        K  +   + +H A AD
Sbjct: 10  LAYQERLERLKKTLFYHLKIDTGMGRIGFWYEE-LEKIEEVLKLKNLEAEGVYTHFARAD 68

Query: 169 DPSSHVNSVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG-- 221
           +     + +Q+ERF  ++ H K  GIE      A+S+ I+  P  H+ L RPGI LYG  
Sbjct: 69  EQDLSFSKLQIERFNIVLKHLKAKGIEVKYRHAANSAAIMRLPEAHYDLVRPGIMLYGEY 128

Query: 222 -GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
              D   +   ++  +T +AR+  ++K  AG  VSYG     ++ +LI    +GYADGY 
Sbjct: 129 PSRDVPRELAHLKPALTLKARVSQVKKVPAGFTVSYGSTYVTSKATLIVSLPLGYADGYF 188

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
             LS             G   I G    I G++ MD  M    ++  +  GD
Sbjct: 189 RRLSN-----------RGVVLINGKRWSITGRVCMDQLMVRWDETERVLPGD 229


>gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
 gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
          Length = 849

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 163/370 (44%), Gaps = 24/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A+++N  ++ A++G     AV+K +AYG G  + A A    G     V ++ E 
Sbjct: 489 VRVDLDAIRDNVRALRAIAG-VPLMAVLKADAYGHGAVRAARAALAGGAMALAVATLGEA 547

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             LR     A I  L    P Q        ++  +         +   + G++    ++V
Sbjct: 548 RTLREAGIGAPILALGYTPPWQVAQAARLGIVLTVFDPDTARACAAAAAIGLNVTMHVEV 607

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  R G+S++E   F     +    ++  + +H A AD         QL RF   +  
Sbjct: 608 DTGMARTGVSVEELGPFLRLLTDLPGVRVEGLYTHFADADAADLSAAEAQLRRFCATLDA 667

Query: 189 Y--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEAR 241
               G+   +   A+S+ +L  P   F + RPGI+ YG     +   P  ++  ++  A 
Sbjct: 668 ITSAGLRPPIVHAANSAALLRLPGARFDMVRPGIACYGLAPSPHTPLPPTLRPALSFHAE 727

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  +R    G  VSYGG     R S IA   +GYADG            +P+     +  
Sbjct: 728 VAQVRDLPPGAPVSYGGTFVTRRASRIATIPVGYADGL---------RRAPAWR---EVL 775

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DIKL--DDVALASGTTNYDL 357
           ++    PI+G+I MD  M D+TD   +  GD + + G   D +L  D++A   GT +YD+
Sbjct: 776 VRRRRAPIVGRICMDYAMIDVTDIPGVRRGDQVTLIGSQGDERLTADEIAGWLGTISYDV 835

Query: 358 LVRIGTRYAK 367
           +  I  R  +
Sbjct: 836 VATILPRVPR 845


>gi|309798696|ref|ZP_07692961.1| alanine racemase [Streptococcus infantis SK1302]
 gi|308117639|gb|EFO55050.1| alanine racemase [Streptococcus infantis SK1302]
          Length = 367

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 168/380 (44%), Gaps = 47/380 (12%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +  +    AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLEAIRYNIQQMGAHIPQDTLKWAVVKANAYGHGAVAVAMAIQD-DVYGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSC-----GVS 121
           +LR      +I +L G+   +   +   FD  L     +V  L +  KL++      G++
Sbjct: 72  ELRQAGISKKILIL-GVSEVESLSLAKDFDITL-----TVAGLEWIQKLIATESDLSGLT 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L++D+G  R+G       +       +    +  I +H A AD+ S      QLE 
Sbjct: 126 --VHLKIDSGMGRIGFRSASEAEEAQTLLKEHGANVEGIFTHFATADEESDSYFKEQLEF 183

Query: 182 FRTLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQ 233
           F+ +++  + + E   AS+S   L   +H    F   R G S+YG       +   + ++
Sbjct: 184 FKEILAGLQEVPELVHASNSATTL---WHAETIFSAVRMGDSMYGLNPSGQVLKLPYELK 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T E+ I+ ++   AG  + YG   +   + +IA   IGYADG+   +          
Sbjct: 241 PALTLESAIVHVKTVPAGACMGYGATYQADGEQVIATVPIGYADGWTRDMQNFSV----- 295

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   + G + PI+G+++MD     +     +  G  + + G     +I   +VA+ 
Sbjct: 296 -------LVDGQLCPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATNVAVY 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  +  R  + Y
Sbjct: 347 RGTINYEVVCLLSDRIPREY 366


>gi|251783257|ref|YP_002997562.1| alanine racemase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391889|dbj|BAH82348.1| alanine racemase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 366

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 157/372 (42%), Gaps = 29/372 (7%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S+   +    RT AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENVASVQENIPLGVRTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + ++     +   ++S+  L    +           +++
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELELAITRQVTVTVASLEWLAMAKQEWPDLKGLKVHIKI 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL     +D           ++  I +H A AD+  +     QL  F  L+  
Sbjct: 131 DSGMGRIGLRSVTEVDNLIAGLKSMRAEVEGIFTHFATADEADTVKFEQQLTFFTNLVDQ 190

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEAR 241
                  + AS +++S  L      F   R GI +YG      ++    P++     E+ 
Sbjct: 191 LADKPSLVHASNSATS--LWHSETIFNAVRLGIVMYGLNPSGSELALPFPLKEAFNLESV 248

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ +++   GE V YG   K      +    IGYADG+   + G                
Sbjct: 249 LVHVKEIAPGETVGYGATYKAQTSEYVGTVPIGYADGWTRDMQGFTV------------L 296

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           ++G    I+G+++MD     +  +  +  G  + + G D    I   D+A    T NY++
Sbjct: 297 VEGQPCEIIGRVSMDQMTIRLPRAYPL--GTKVTLIGQDQEKVISTTDIANYRNTINYEV 354

Query: 358 LVRIGTRYAKFY 369
           L  +  R  + Y
Sbjct: 355 LCLLSDRVPRVY 366


>gi|213622235|ref|ZP_03375018.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 178

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 2/164 (1%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V LR + +  A + +L G+ P          + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
           Q+D+G +RLG++ ++          +       IISHLA AD P
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRP 177


>gi|315445863|ref|YP_004078742.1| alanine racemase [Mycobacterium sp. Spyr1]
 gi|315264166|gb|ADU00908.1| alanine racemase [Mycobacterium sp. Spyr1]
          Length = 375

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 163/387 (42%), Gaps = 52/387 (13%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+ +N   +   +G A   AVVK + YG G   +A A   AG  +  V +++E + 
Sbjct: 8   IDLDAIAHNVGVLRDRAGRAAVMAVVKADGYGHGATAVARAALAAGATNLGVATLDEALS 67

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK---------LMSCGVS 121
           LR     A   VL  +HP        T+  P + +  ++   S+         +   G +
Sbjct: 68  LRRDGVTA--PVLSWLHPPG------TDFTPAVQADIEVALSSRRQLDDLLRAVARTGRT 119

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSH 173
               ++ DTG +R G+S  +     H      L +           ++SHLA  D P   
Sbjct: 120 ATVTVKADTGLSRNGVSPAD-----HPGLVSALARAQTDGAVTVHGLMSHLAHGDVPDHP 174

Query: 174 VNSVQLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
            N  Q  R   + S  +    +     L +S   L  P+  F + RPGI++YG T    +
Sbjct: 175 FNDEQARRLTEMASEARSAGVAYDVVHLCNSPAALTRPDLAFDMVRPGIAVYGQTPIPER 234

Query: 229 SH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++  +T +  + L+R   AG+ VSYG      RD+ +A+   GYADG    LS   
Sbjct: 235 GDMGLRPAMTVKCPVALVRSVRAGDGVSYGHTWLAPRDTTLALIPAGYADGVFRALS--- 291

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIK 342
                + F   +  I G   P +G++ MD  + D+    + +  GD   +FGP    +  
Sbjct: 292 -----NRF---EVTINGRRYPNVGRVCMDQFVVDLGPGPVDVAEGDDAILFGPGDDGEPT 343

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             D A   GT NY+++     R  + Y
Sbjct: 344 AQDWADLLGTINYEVVTSPRGRIVRGY 370


>gi|264676328|ref|YP_003276234.1| alanine racemase [Comamonas testosteroni CNB-2]
 gi|299533815|ref|ZP_07047186.1| alanine racemase [Comamonas testosteroni S44]
 gi|262206840|gb|ACY30938.1| alanine racemase [Comamonas testosteroni CNB-2]
 gi|298718231|gb|EFI59217.1| alanine racemase [Comamonas testosteroni S44]
          Length = 368

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 163/378 (43%), Gaps = 46/378 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   A+++N   +     +A+  +V+K NAYG G E +   L       F +  ++E  +
Sbjct: 9   IHPEAVRHNLERVRQAVPDAKLWSVIKANAYGHGIENVFEGLR--ATDGFAMLDLDEAQR 66

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +R    +  I +L G+   ++ +I     +   +    Q+ + +   +  V H   L+++
Sbjct: 67  VRNLGWRGPILLLEGVFELRDLEICSRLGIWHAVHCDEQIDWLAAHKT-QVGHRVFLKMN 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVNSVQLER 181
           +G NRLG        FT   F     +L+ +        ++H + AD    H    QL  
Sbjct: 126 SGMNRLG--------FTPERFRAAYARLNALPQVDEISFMTHFSDAD--VEHGLDHQLRV 175

Query: 182 FRTLISHYKGIEASLASSSGILL---GPNYHFQLTRPGISLYGGTDKI---NKSH-PMQT 234
           F        G E S+++S+  LL     N      RPGI LYG +      + +H  ++ 
Sbjct: 176 FHETTLDLPG-ERSVSNSAATLLHGDENNVRCDWVRPGIVLYGSSPDFPTHDAAHWGLEP 234

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T  ++II  ++  AG+ V YG + +      + V A GYADGYP              
Sbjct: 235 TMTLSSKIIGTQELHAGDTVGYGSRFQCDGPLRLGVVACGYADGYPRVCP---------- 284

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALA 349
             G    + G     LG+++MDM   D++      +G  + ++G       + +D+VA A
Sbjct: 285 -TGTPVLVDGVRTRTLGRVSMDMMAVDLSPVPKARLGSEVTLWGRASNGAVLPIDEVAAA 343

Query: 350 SGTTNYDLLVRIGTRYAK 367
           +GT  Y+L+  +  R  K
Sbjct: 344 AGTLGYELMCAVAPRVPK 361


>gi|55821698|ref|YP_140140.1| alanine racemase [Streptococcus thermophilus LMG 18311]
 gi|81820398|sp|Q5M2S7|ALR_STRT2 RecName: Full=Alanine racemase
 gi|55737683|gb|AAV61325.1| alanine racemase [Streptococcus thermophilus LMG 18311]
          Length = 367

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 171/380 (45%), Gaps = 45/380 (11%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           K+DL+A+  N   + + +    +T AVVK NAYG G  ++A  + +  V  F V++++E 
Sbjct: 12  KVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHV-SKQVDGFCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL------MSCGVSH 122
           ++LR    +  I +L  + P    +    N+   ++S+  LT   K       ++C +  
Sbjct: 71  LELRQAGIEQPILILGVVLPDGVPLAIQENISLTVASLEWLTLAQKQGLDLTGLTCHI-- 128

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLE 180
               +VD+G  R+G+ +L++A +       K LG  +  I +H A AD+        QL 
Sbjct: 129 ----KVDSGMGRIGVRNLKDADNLIAGL--KALGADVEGIFTHFATADEADDSKFKRQLS 182

Query: 181 RFRTLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
            F  L+ +     + + AS +++S  +      F   R G+ +YG       +   + +Q
Sbjct: 183 FFTDLVDNLTDRPRLVHASNSATS--IWHAATVFNTVRLGVVIYGLNPSGSVLELPYNIQ 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E  +I ++   AG+ V YG     T + +I    IGYADG+   L G        
Sbjct: 241 PALSLETALIHVKTLPAGQDVGYGATYTTTDEEVIGTLPIGYADGWTRDLQGFHV----- 295

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   + G + PI+G+++MD     +     +  G  + + G +    I   +VA  
Sbjct: 296 -------IVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGVSITATEVAEK 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY++L  +  R  + Y
Sbjct: 347 RGTINYEVLCLLSDRVPRSY 366


>gi|218516484|ref|ZP_03513324.1| alanine racemase protein [Rhizobium etli 8C-3]
          Length = 189

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 15/172 (8%)

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPG-ISLYGG-TDKINKSHPMQTVVTAEARI 242
           +   + G   S A+S G+ LG  YH  L RP    LYGG T     ++PM+ VV  +  +
Sbjct: 3   IADEFPGFNISFANSGGVFLGDAYHGVLARPRHTPLYGGRTITPAGTNPMEPVVRLDVAV 62

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +  R   +G  + YGG     R++ +A  A GYADG P +L    +            + 
Sbjct: 63  VQTRTVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDCSAV-----------YH 111

Query: 303 KGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGT 352
           KG  +PI+G+++MD    DIT     ++ +G  +++ GP+  L+DVA A+GT
Sbjct: 112 KGIRLPIIGRVSMDSATVDITALPEGALRLGSLVEVLGPNQTLEDVAGAAGT 163


>gi|118497341|ref|YP_898391.1| alanine racemase [Francisella tularensis subsp. novicida U112]
 gi|195536029|ref|ZP_03079036.1| alanine racemase [Francisella tularensis subsp. novicida FTE]
 gi|226711045|sp|A0Q5X2|ALR_FRATN RecName: Full=Alanine racemase
 gi|118423247|gb|ABK89637.1| alanine racemase [Francisella novicida U112]
 gi|194372506|gb|EDX27217.1| alanine racemase [Francisella tularensis subsp. novicida FTE]
          Length = 365

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 162/375 (43%), Gaps = 38/375 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           L+I    L+NN   +    G+A+    VK NAYG G E I    ++  + DFF V +V E
Sbjct: 4   LEISAQTLRNNIRIIKEYVGSAKICFPVKANAYGHGLELIVE--HSHDLVDFFAVANVLE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-L 126
             ++ L   +  + +   I       I   N+   I     +    K        P+  +
Sbjct: 62  AFRV-LDVVEKPVMIFGVIEYNYIDRILSKNIRVSIQDYNDIEKLEKFAKYYNKKPFVHV 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++
Sbjct: 121 NLNTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIV 180

Query: 187 SHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-----TDK-INKSHPMQTVV 236
              KG+       L++S G L      + + RPGI  YG       D+ I +  P+  ++
Sbjct: 181 EFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLL 240

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   +II +++   GE V Y    +      +AV  IGY DG+P               L
Sbjct: 241 SKVVKIITLQE---GEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRE-------------L 284

Query: 297 GGKGF--IKGYMVPILGKITMD-MTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           G +GF  I   M P+ G+++MD +T+    +   ++V D +++     +  +    +A  
Sbjct: 285 GDRGFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVSDTVELISAIPRNRNSAFSIAKQ 344

Query: 350 SGTTNYDLLVRIGTR 364
           + T  YD++  +  R
Sbjct: 345 TNTIEYDIMSTLNDR 359


>gi|55823619|ref|YP_142060.1| alanine racemase [Streptococcus thermophilus CNRZ1066]
 gi|81820232|sp|Q5LY71|ALR_STRT1 RecName: Full=Alanine racemase
 gi|55739604|gb|AAV63245.1| alanine racemase [Streptococcus thermophilus CNRZ1066]
 gi|312279040|gb|ADQ63697.1| Alanine racemase [Streptococcus thermophilus ND03]
          Length = 367

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 169/380 (44%), Gaps = 45/380 (11%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           K+DL+A+  N   + + +    +T AVVK NAYG G  ++A  + +  V  F V++++E 
Sbjct: 12  KVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHV-SKQVDGFCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL------MSCGVSH 122
           ++LR    +  I +L  + P    +    N+   ++S+  L    K       ++C +  
Sbjct: 71  LELRQAGIEQPILILGVVLPDGVPLAIQENISLTVASLEWLALAQKQGLDLTGLTCHI-- 128

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLE 180
               +VD+G  R+G+ +L++A +       K LG  +  I +H A AD+        QL 
Sbjct: 129 ----KVDSGMGRIGVRNLKDADNLIAGL--KALGADVEGIFTHFATADEADDSKFKRQLS 182

Query: 181 RFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
            F  L+ +       + AS +++S  +      F   R G+ +YG       +   + +Q
Sbjct: 183 FFTDLVDNLTARPRLVHASNSATS--IWHATTVFNTVRLGVVIYGLNPSGSVLELPYNIQ 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E  +I ++   AG+ V YG     T + +I    IGYADG+   L G        
Sbjct: 241 PALSLETALIHVKTLPAGQEVGYGATYTTTAEEVIGTLPIGYADGWTRDLQGFHV----- 295

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   + G + PI+G+++MD     +     +  G  + + G +    I   +VA  
Sbjct: 296 -------IVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAEK 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY++L  +  R  + Y
Sbjct: 347 RGTINYEVLCLLSDRVPRSY 366


>gi|257066468|ref|YP_003152724.1| alanine racemase [Anaerococcus prevotii DSM 20548]
 gi|256798348|gb|ACV29003.1| alanine racemase [Anaerococcus prevotii DSM 20548]
          Length = 373

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 163/379 (43%), Gaps = 46/379 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++D+  ++ N  ++  +S N    AVVK NAYGLG   IA  + N  V  F V +  E 
Sbjct: 6   IEVDIDKIQRNIENIKKISKNKNICAVVKANAYGLGATVIAKYIENQ-VSYFAVANFLEA 64

Query: 69  VKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYA 125
             LR+      I +L    +    E + +D   IP+      L++  ++    V      
Sbjct: 65  KNLRIAGITKPIMILGFVSVEEANECVDYDIE-IPIYD----LSYAERINKSIVGDLKVH 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLI-----ISHLACADDPSSHVNSVQ 178
           + +DTG +RLG        F    F++  KL QL  +      SH + AD+        Q
Sbjct: 120 IALDTGHSRLG--------FREFEFDRIIKLKQLERLKIKGAFSHFSTADEEDKTFTQEQ 171

Query: 179 LERF---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTD--KINKSHP 231
            E+F   R  +     IE    ++S   +  +    + R GI++YG   +D  +  K   
Sbjct: 172 YEKFERIRKKLDDQFNIEIFHIANSAASIYHDLISDMDRIGIAMYGIYPSDYLRERKDIR 231

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++     ++R+  +++   G+ VSYG   K      IA   IGYADGY    S +     
Sbjct: 232 LEQAFLLKSRVSFVKEINEGDSVSYGRAFKAKSRMKIATIPIGYADGYFRAFSNI----- 286

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G+  I G +  + G++ MD  M D++D +  ++ D + I  PDI  +   +   
Sbjct: 287 ------GEVLINGKISKVCGRVCMDQIMVDVSD-IDCKIEDEV-ILYPDIYEEANKIV-- 336

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y+L+     R  + Y 
Sbjct: 337 TIPYELMTSFDMRLTRVYV 355


>gi|320532158|ref|ZP_08033029.1| alanine racemase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135625|gb|EFW27702.1| alanine racemase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 386

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 150/353 (42%), Gaps = 52/353 (14%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL A+ +N   +  ++G    A VVK +AYG G   IA    +AG     V  + E
Sbjct: 28  RAVIDLEAVAHNGRRLAQVAGVPWMA-VVKADAYGHGLGPIALTALSAGASWLGVAQLAE 86

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV------------------------I 103
            + LR    +A +    G    Q   +  T L+PV                        +
Sbjct: 87  ALTLRSLLDEAGVSRPAGEPSAQAPRVL-TWLLPVMEPARAAAEDSPLRAALAADLDLSV 145

Query: 104 SSVPQLTFYSKLMSCGVSHPYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--- 159
           S++PQL   S             L+VDTG +R G + +E L     +  + + + ++   
Sbjct: 146 STLPQLEALSAAARAQGRAARLHLKVDTGMSRGGAAPEE-LPALAVALRRAVDEGTVDVV 204

Query: 160 -IISHLACADDPSSHVNSVQLERFRTL--ISHYKGIEAS---LASSSGILLGPNYHFQLT 213
            + SHL+ AD+P+S      LER+R    +    G+      LA++ G+L  P     L 
Sbjct: 205 GLWSHLSRADEPASGSTEEHLERYRQAEHVVRAAGLNPPIRHLAATGGLLWHPQARMDLV 264

Query: 214 RPGISLYGGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
           R GI LYG +   + +      ++  +  E+ ++ +++  AG+ VSYGG      D  + 
Sbjct: 265 RAGIGLYGLSPDPSVATGAELGLRPAMRLESPLVQVKRIEAGQAVSYGGTWSAPTDRWVG 324

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
           +  +GY+DG P   S             G   + G M  I+G++ MD  + D+
Sbjct: 325 LVPLGYSDGIPRAASS-----------AGPVGVGGIMTSIVGRVCMDQVVVDL 366


>gi|332283733|ref|YP_004415644.1| alanine racemase, catabolic [Pusillimonas sp. T7-7]
 gi|330427686|gb|AEC19020.1| alanine racemase, catabolic [Pusillimonas sp. T7-7]
          Length = 376

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 28/350 (8%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPG 89
           R  AV+K NAYG G ++       A      +  + E V+ R       I +L G   PG
Sbjct: 38  RVWAVIKANAYGHGIDQAVQGFAQA--DGLAMLDLNEAVRCRELGWTKPILLLEGFFEPG 95

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALD-FTHN 148
              ++ +  L   +    QL   +        + + ++++ G NRLG S     D +   
Sbjct: 96  DIAVLDEYCLTTSLHCQEQLEMLAAAKPANPLNAF-VKLNVGMNRLGFSEYAFPDAYRQA 154

Query: 149 SFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG- 205
              ++ G L+ +  +SH A ADD S    + QL+ F  +     G  +   S++ +  G 
Sbjct: 155 QQLQQQGILASVGKMSHFARADD-SPVTTTQQLQVFNRMTQGLPGPFSVCNSAASLTAGL 213

Query: 206 ----PNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
                +   Q  RPGI LYG +   D++  +  ++  +T  A++I +R+   G  V YG 
Sbjct: 214 WTTVSSDEEQWVRPGICLYGSSPFEDRLPDALGLRPAMTLAAQLISVREIPRGAGVGYGH 273

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
               +    I + A GYADGYP         H+ +   G    + G    ++G+++MDM 
Sbjct: 274 VFTASDAMRIGIVACGYADGYP--------RHAGT---GTPICVDGVRTRLVGRVSMDML 322

Query: 319 MFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIGTRYAK 367
             D+T      VG  + ++G     +D+VA A+GT  Y+LL  +  R  +
Sbjct: 323 AVDLTPVPQAGVGSPVVLWGEGGPSVDEVAQAAGTIGYELLCAVAPRVPR 372


>gi|309810948|ref|ZP_07704748.1| alanine racemase [Dermacoccus sp. Ellin185]
 gi|308435102|gb|EFP58934.1| alanine racemase [Dermacoccus sp. Ellin185]
          Length = 400

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 171/399 (42%), Gaps = 51/399 (12%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N   R+ +DL A+ +N + M   +  A    VVK +AYG G    A A  + G     V 
Sbjct: 12  NAPARVVVDLDAIADNANEMTRRAEGASVLGVVKGDAYGHGLVPSARAAVSGGSTWLGVA 71

Query: 64  SVEEGVKLRLYTPQAR----IFVLYGIH----PGQEKIIFDTNL-IPVISSVPQLTFYSK 114
            + E + LR    +      + VL  +H    P  E I    +L +P +  +  +   ++
Sbjct: 72  QLAEAMTLRRAAAEGAGDLDVPVLSWLHAPGSPFAEAIEARIDLGVPSVGELDGIAAAAR 131

Query: 115 LMSCGVSHPYALQVDTGFNRLGL------SLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
            +         L+VDTG  R G        L EA      + + ++  L   ++H   AD
Sbjct: 132 RVGRRAR--VHLKVDTGLARNGAYGDDWPRLVEAAKAAQATGDVEVVGL---MTHFVRAD 186

Query: 169 DPSSHVNSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGT 223
           +P    N+ Q+ERF +  +  +  G E     +++S      P   F L RPG++LYG +
Sbjct: 187 EPGHPENTAQIERFTSAATDCESAGFELEVRHMSNSPATFFLPEARFDLVRPGLALYGLS 246

Query: 224 D----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
                  ++   ++  ++  A + + ++  AG+ VSYG      R + +A   +GYADG 
Sbjct: 247 PAPDLATSEELTLRPAMSITANVTVTKRVPAGQGVSYGHTYTTPRGTTLADIPVGYADGV 306

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-- 337
           P   S +           G   + G    I G++ MD  + D  D+      + + +F  
Sbjct: 307 PRAASNV-----------GPLLVAGARTTIAGRVCMDQIVTDAGDAAVAAGDEVV-LFGR 354

Query: 338 ------GPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
                 GP  +  D A A+GT +Y+++ R+ TR  + YT
Sbjct: 355 ASDGTQGPSAQ--DWADAAGTISYEIVTRMSTRLPRVYT 391


>gi|154486952|ref|ZP_02028359.1| hypothetical protein BIFADO_00785 [Bifidobacterium adolescentis
           L2-32]
 gi|154084815|gb|EDN83860.1| hypothetical protein BIFADO_00785 [Bifidobacterium adolescentis
           L2-32]
          Length = 455

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 171/408 (41%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTA----AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL AL++N   + ++ G   +      +VK +AYG G    A A    G          
Sbjct: 36  VDLAALRDNMRHLVSVVGGPHSGTAVMGIVKADAYGHGLVPAALAALAGGATWLGTAQSH 95

Query: 67  EGVKLRL--YTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FYSKLMSCGV 120
           E + LR     P  R  +L  ++ G E     + D ++   + S+  +    +     G 
Sbjct: 96  EALLLRKAGIGPD-RCHILTWVYSGAEVPFDELVDNDIDISVGSLAGIDGVAAAARRLGK 154

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
           +    ++VD+GF R G        FT   F+  L +L  +            SHLA AD 
Sbjct: 155 TARVHVKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 206

Query: 170 PSS----HVNSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P          +Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 207 PDVPEFVASTDMQVETFKDFTRRMEAAGIPPEIRHLANTAATLSRPEIHFELTRPGIGLY 266

Query: 221 GGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    ++  +T +A++  ++   AG  +SYG       D+  A+  +GYA
Sbjct: 267 GYEADPAMGTPSTYSLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPSDTSTAIVPLGYA 326

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFIKGYMVPIL----GKITMDMTMFDITDS---LSI 328
           DG   + SG D E +  V   GG   +     P L    G++ MD  + D+  S   L I
Sbjct: 327 DGIHRSASGFDMEGAKHVTKPGGPVRVMTSEGPRLYRVSGRVCMDQFILDLHGSAAELGI 386

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD   A+ T +Y++   +  R  + Y
Sbjct: 387 HEGDNVELFGPGRGEDYAEPTADDWGRAADTISYEIFTCLRNRIPRLY 434


>gi|326406390|gb|ADZ63461.1| alanine racemase [Lactococcus lactis subsp. lactis CV56]
          Length = 367

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 155/376 (41%), Gaps = 39/376 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL A++NN       +  NA     VK +AYG G  +++ A+ +  V  F V++++E +
Sbjct: 13  VDLKAIRNNIEKFKKHIHPNAEIWPAVKADAYGHGSVEVSKAVSDL-VGGFCVSNLDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR +     I VL GI      I    N+     S+  L    +  +        + VD
Sbjct: 72  ELRNHLVTKPILVLSGIVQEDVDIAAALNISLTAPSLEWLKLVVQEEAELSDLKIHIGVD 131

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G  R+G+   E  +      +K       I +H A AD            +F+   + +
Sbjct: 132 SGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADD-------TKFKDQQARF 184

Query: 190 KGIEASLASSSGILLGPN-----YHFQ----LTRPGISLYG---GTDKINKSHPMQTVVT 237
             I A L+     +   N     +H +    + R GIS+YG       +     ++  ++
Sbjct: 185 NKIMAGLSRKPKFVHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEIEPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  I+K  AGE V YG   + + ++ I    IGYADG+   + G            
Sbjct: 245 LVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            K  + G    I+G++ MD  M  +  S  +  G  + + G D    I   DVA   GT 
Sbjct: 294 -KVLVNGEFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKTNEITTTDVADWRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIKRIY 366


>gi|313674767|ref|YP_004052763.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312941465|gb|ADR20655.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 385

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 164/384 (42%), Gaps = 56/384 (14%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+++  +ALK N + +    G NA  ++VVK NAYG G E   P    AGV  F V S  
Sbjct: 7   RIELKQSALKANINFIKKKIGKNAILSSVVKANAYGHGIESFVPMAEKAGVHHFSVASSF 66

Query: 67  EGVK-LRLYTPQARIFVL---------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           E  + L     ++ I ++         + I    E  +++ + +P+     +        
Sbjct: 67  EAEEVLNACHEKSEIMIMGIIYEEDIPWAIENNIEFFVYNYDRLPITLEAAK-------- 118

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             G S    ++V+TG NR G+  +E   A+ F     NK+      + +H   A+  S+ 
Sbjct: 119 KVGKSAKVHIEVETGANRTGMPAEEFPKAISFLKK--NKEHVVFQGLCTHFGGAESLSNQ 176

Query: 174 VN-SVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG------ 221
                Q  +++  +       Y+     +A S+  L  P+  + L R G++ YG      
Sbjct: 177 FKIDKQKAKYKEFLKICRDKKYEPKIRHIACSAAALAMPDTVYDLVRVGVAQYGFWPSPD 236

Query: 222 -------GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
                   TDK      ++ + + +  I+ IR    G+ + YG   + +    IAV  +G
Sbjct: 237 IYYHHLQETDK-KSDGALKRIFSWKTDIMDIRDVPEGDFIGYGTAFQASHKMKIAVMPLG 295

Query: 275 YADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
           Y++GYP  LS             G   I G   PI+G I M++ M DIT     +VGD +
Sbjct: 296 YSNGYPRALSNR-----------GYVLIAGKKAPIVGLINMNLFMVDITHIPQAKVGDEV 344

Query: 335 QIFGPDIKLDDVALASGTTNYDLL 358
            + G   K + + ++S T +  LL
Sbjct: 345 VLIGRQ-KNNVINVSSFTNSTQLL 367


>gi|315613615|ref|ZP_07888522.1| alanine racemase [Streptococcus sanguinis ATCC 49296]
 gi|315314306|gb|EFU62351.1| alanine racemase [Streptococcus sanguinis ATCC 49296]
          Length = 367

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 165/375 (44%), Gaps = 37/375 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IYLGAIRKNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVATAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           +LR      ++ +L G+   +   +   +D  L        Q     +    G+S    L
Sbjct: 72  ELRQAGISKKLLIL-GVSEIEAVSLAKEYDITLTVAGLEWIQALLVRETDLSGLS--VHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++D+G  R+G       +       +   ++  I +H A AD+ S    + QLERF+ ++
Sbjct: 129 KIDSGMGRIGFRDSSEAEQAQALLQQHGARVEGIFTHFATADEESDSYFNTQLERFKAIL 188

Query: 187 SHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
           +  K + E   AS+S   L   +H    F   R G ++YG     + +N  + +   ++ 
Sbjct: 189 ASMKEVPELVHASNSATTL---WHAETIFNAVRMGDAMYGLNPSGEVLNLPYDLTPALSL 245

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV + G
Sbjct: 246 ESALVHVKTVPAGTCMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVLVDG 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354
           +        PI+G+++MD     +     +  G  + + G     +I    VA   GT N
Sbjct: 300 QA------CPIVGRVSMDQITIRLPKIYPL--GTKVTLIGSNGDKEITATQVAAYRGTIN 351

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  +  R  + Y
Sbjct: 352 YEVVCLLSDRIPREY 366


>gi|229009742|ref|ZP_04166965.1| Alanine racemase [Bacillus mycoides DSM 2048]
 gi|228751537|gb|EEM01340.1| Alanine racemase [Bacillus mycoides DSM 2048]
          Length = 389

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEYIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +   K  G+       A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLRWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGY DG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYGDGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       K  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------KVLVNGERVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|294054687|ref|YP_003548345.1| alanine racemase [Coraliomargarita akajimensis DSM 45221]
 gi|293614020|gb|ADE54175.1| alanine racemase [Coraliomargarita akajimensis DSM 45221]
          Length = 378

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 162/377 (42%), Gaps = 34/377 (9%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A + N   + A L  + R  +VVK +AYG G   +   L  +GV  F V +V E 
Sbjct: 13  EIDLAAFERNVRRIQAELPSDVRYVSVVKADAYGHGMPHMVRRLMQSGVDCFAVANVAEA 72

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQ 127
            ++R       I +L  + P ++  + + +L   IS+  +    ++L     S     L+
Sbjct: 73  AEIRHMGSGWPILILSPVLPYEQAKLLEYDLSATISTETEAHTLNELAKRKNSTLKVHLK 132

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRTL- 185
           +DTG  RLG+  + A     +       +L  I +H + AD DP+      QL+R R L 
Sbjct: 133 IDTGMGRLGVWYESARALFDSLQAYPHLKLEGIYTHFSSADSDPTF----TQLQRQRLLD 188

Query: 186 ---------ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
                    +  +    ASL S SG          L + GI  Y     +  S  ++ V 
Sbjct: 189 FLEQVPIDDLLIHADNSASLESLSGQSPFNAVRVGLLQLGIPPY--PQSLLGSIHVEPVF 246

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   RI LI++   G  +SY     L R + I +   GY DG PLTLS            
Sbjct: 247 SFHTRIGLIKELPPGTDISYSRTYTLNRTTRIGILTAGYGDGIPLTLSN----------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
            G+  I G   PILG++TMD T+ D++ +    VGD   + G      I   + +  + T
Sbjct: 296 RGEVLIHGRRCPILGRVTMDQTIVDLSGATDARVGDIATLIGQHGDETISAAEFSQTAET 355

Query: 353 TNYDLLVRIGTRYAKFY 369
             ++ L  I  R  + Y
Sbjct: 356 IPWETLCSITKRVTRTY 372


>gi|319779710|ref|YP_004130623.1| Alanine racemase [Taylorella equigenitalis MCE9]
 gi|317109734|gb|ADU92480.1| Alanine racemase [Taylorella equigenitalis MCE9]
          Length = 412

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 152/345 (44%), Gaps = 33/345 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D+ A +NN   +  L +G ++  A++K +AYG G   + P++    V    + S EE
Sbjct: 45  IEVDVQAFENNIAELQKLLNGKSKVCAILKADAYGHGINLLMPSIIKMNVPCIGIASNEE 104

Query: 68  GVKLRLYTPQARIFVLYG--IHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPY 124
               R +  +  I  +    I+  ++ + +D   L+  ++    +   +K     V    
Sbjct: 105 ARIARAHNYEGTIMRVRAASINEIKDGLKYDMEELVGDVTQAQTINALAKEAGKDVRIHI 164

Query: 125 ALQVDTGFNRLGLSLQ------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           +L    G +R G+ +       EAL+ T  S  K +G    I++H    ++     + V+
Sbjct: 165 SLN-SAGMDRNGIDMSTDNGRAEALELTKFSNLKVVG----IMTHYPEENEEIIRKDLVR 219

Query: 179 LERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
                  +    G+  +      A+S   L  P  HF + RPG  LYG  D I      +
Sbjct: 220 FNEDSKWLIENAGLNRNQIVIHTANSYTTLTVPEAHFDMVRPGGLLYG--DSIPTRTEYK 277

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +++ ++R+  I     G  V Y    KL RDS++A    GY+DGY    S         
Sbjct: 278 RILSFKSRVANINHYPKGSTVGYDRTFKLERDSMLANLPFGYSDGYRRIFSN-------- 329

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
               G   I G+ VP++G+++M+ TM D+TD   I  G  + IFG
Sbjct: 330 ---KGYVLINGHKVPVVGRVSMNTTMVDVTDFPDILEGAEVVIFG 371


>gi|58336608|ref|YP_193193.1| ala racemase [Lactobacillus acidophilus NCFM]
 gi|227903165|ref|ZP_04020970.1| ala racemase [Lactobacillus acidophilus ATCC 4796]
 gi|81311540|sp|Q5FMB2|ALR_LACAC RecName: Full=Alanine racemase
 gi|58253925|gb|AAV42162.1| ala racemase [Lactobacillus acidophilus NCFM]
 gi|227868970|gb|EEJ76391.1| ala racemase [Lactobacillus acidophilus ATCC 4796]
          Length = 376

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 157/378 (41%), Gaps = 32/378 (8%)

Query: 9   LKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A++ N  + M  L    +  AVVK NAYG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIRRNLENEMKHLDPGQKMLAVVKANAYGHGAVEVAKVAEEVGAAGFCVAVLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           G++LR       I VL  + P    I    N+   + +   L    K L    +     L
Sbjct: 71  GLQLRHADIVKPILVLGVVSPKYAPIAAVNNISLTVPNFEWLKEAEKYLAKENLQLKIHL 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRT 184
            +D+G  R+G +  +      N F +   Q  +  + +H A AD         QLE+F  
Sbjct: 131 GIDSGMGRIGFNEDDEF-IEANKFLENNDQFFVEGMFAHFASADSADESYFEHQLEKFNH 189

Query: 185 LIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHPMQ 233
           + S      K I  S  ++S  +   N    L R GI +YG        +  +N    ++
Sbjct: 190 MKSLLTVKPKWIHVSNTAAS--IFHKNIKSDLVRFGIGIYGLNPSSNPASADLNPDIKLE 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ +  ++    G+ VSYG      +D++I    +GYADG+     G        
Sbjct: 248 PALSFESELTHVKTIHKGDGVSYGSTFVADKDTIIGTVPVGYADGWIRKFQGF------K 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS--G 351
           V +G K        PI+G+I MD  M ++ + + +     I    PD   +  A A    
Sbjct: 302 VKVGDK------YCPIVGRICMDQFMVELPEKMPVGTKVVIISNNPDDPNNIKAAADYVN 355

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++   +  R  + Y
Sbjct: 356 TIHYEVACLLNDRLPRIY 373


>gi|228477128|ref|ZP_04061766.1| alanine racemase [Streptococcus salivarius SK126]
 gi|228251147|gb|EEK10318.1| alanine racemase [Streptococcus salivarius SK126]
          Length = 367

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 164/378 (43%), Gaps = 41/378 (10%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           K+DL+A+  N   + + +    +T AVVK NAYG G  ++A  L +  V  F V++++E 
Sbjct: 12  KVDLSAISENIEQVVSHIPKKVQTFAVVKANAYGHGAVEVAKHL-SKQVDGFCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL------MSCGVSH 122
           ++LR    +  I +L  + P +  +    N+   ++S+  L            ++C +  
Sbjct: 71  LELRQAGLEQPILILGVVLPDEVPLAIQENITLTVASLEWLEMAKDQGLDLTGLTCHI-- 128

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
               ++D+G  R+G+  Q   D            +  I +H A AD+        QL  F
Sbjct: 129 ----KIDSGMGRIGVRSQGDADSLIAGLKALGADVEGIFTHFATADEADDSKFKRQLAFF 184

Query: 183 RTLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTV 235
             L+++     + + AS +++S  +      F   R G+ +YG       ++  + ++  
Sbjct: 185 TDLVNNLVDRPRLVHASNSATS--IWHAETVFNAVRLGVVIYGLNPSGSVLDLPYNIRPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  E  ++ ++   +G+ V YG     T D +I    IGYADG+   L G          
Sbjct: 243 LRLETALVHVKTLPSGQDVGYGATYTTTADEVIGTIPIGYADGWTRDLQGFHV------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G + PI+G+++MD     +     +  G  + + G +    I   +VA   G
Sbjct: 296 -----IVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAEKRG 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++L  +  R  + Y
Sbjct: 349 TINYEVLCLLSDRVPRSY 366


>gi|126651486|ref|ZP_01723690.1| D-alanine racemase [Bacillus sp. B14905]
 gi|126591739|gb|EAZ85835.1| D-alanine racemase [Bacillus sp. B14905]
          Length = 389

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 164/400 (41%), Gaps = 59/400 (14%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M + ++ R     I+L A++ N  ++   +  N +  AVVK NAYG G   +A A   AG
Sbjct: 17  MKTQQYFRPTKAMINLQAIQQNVKNLKKFIRPNVQIIAVVKANAYGHGDVAVAQAALEAG 76

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP-------GQEKIIFDTNLIPVISSVPQL 109
                V + +E + +R +     I +L G  P        Q++I+        +     L
Sbjct: 77  ATILAVATPDEALHIRAHFEDPDILIL-GASPVSFAPFAAQQRIMLTVYGSEWVQQAAPL 135

Query: 110 TFYSKLMSCGVSHPYAL--QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLAC 166
                L       P  L  +VD+G  R+G+ S Q+ L       +    +L+ I +H A 
Sbjct: 136 IANEAL-------PLLLHMKVDSGMGRIGIRSEQDLLALYQTIESTDNVELNGIFTHFAT 188

Query: 167 ADDPSSHVNSVQLERFRTLIS---------HYKGIEASLASSSGILLGPNYHFQLTRPGI 217
           AD+  +     Q++ F + ++         H     ASL   S      N  +   R GI
Sbjct: 189 ADEKDTTYFDQQVQFFESCLAVLPIKPPLVHASNTAASLVKDS------NLQYDAVRYGI 242

Query: 218 SLYG--GTDKINKSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI 273
           S+YG   +  +    P  +Q   + E+ ++ +++   GE V YG       D  I    I
Sbjct: 243 SMYGLSPSSYVESILPFALQPAFSLESELVHVKEIKKGESVGYGATYVAPTDMWIGTLPI 302

Query: 274 GYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
           GYADG    L G +              I G  +PI+G+I MD  M  +  + +I  G+ 
Sbjct: 303 GYADGVIRKLGGQEV------------LIDGQRMPIVGRICMDQCMVALPKAYAI--GEK 348

Query: 334 IQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + + G      I +D+ A    T NY++   I  R  + Y
Sbjct: 349 VTLIGQQGQNRISIDEWATKLETINYEIPCMITARVPRIY 388


>gi|83591223|ref|YP_431232.1| alanine racemase [Moorella thermoacetica ATCC 39073]
 gi|83574137|gb|ABC20689.1| alanine racemase [Moorella thermoacetica ATCC 39073]
          Length = 409

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 158/358 (44%), Gaps = 29/358 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + I+ TAL +N  ++ AL + + R  AV+K +AYG G  ++A    +AG     VT++ E
Sbjct: 15  ITIEATALAHNLKAVKALLAPSTRLLAVIKADAYGAGAVEVARIFLDAGADYLGVTTLAE 74

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYAL 126
           G++LR     A + ++  + P +        L   +SS        +   + G      L
Sbjct: 75  GLELRRAGIAAPVLLMSPLLPEELPAAIAAGLTLTVSSRSGAEAIAAAAAATGHRARVHL 134

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +V+TG  R GL                  +L  + SHLA A  P++    +    F+ ++
Sbjct: 135 KVETGLQRTGLEAAAVAPLAREILTWPGVELEGVYSHLAEAARPAAARRQMAC--FQQVL 192

Query: 187 SHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE 239
           +  +    ++      +S+G+L  P  H  + R G  LYG        +   ++     +
Sbjct: 193 AELEEEHIAIPLRHICNSTGLLTHPEMHLDMVRTGTLLYGQFPYQAPRRGLALKDPWQFK 252

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD------SEHSPS 293
           ARI+ I    AG  V YGG   + + + +AV  +GYADG+ LT           + +   
Sbjct: 253 ARILFIHDVAAGTPVGYGGDYVVKKATRLAVIPVGYADGFALTAVARPKNLNDLARYLVK 312

Query: 294 VFL------GGKG---FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
            FL      GG+G    I G   P++G++ M ++M D+     +EVG   QI   DI+
Sbjct: 313 TFLAYLGRGGGEGTTVIIGGRTAPVVGRVGMQLSMVDVGHLPEVEVG---QIVTLDIR 367


>gi|116628421|ref|YP_821040.1| alanine racemase [Streptococcus thermophilus LMD-9]
 gi|122266984|sp|Q03IX8|ALR_STRTD RecName: Full=Alanine racemase
 gi|116101698|gb|ABJ66844.1| alanine racemase [Streptococcus thermophilus LMD-9]
          Length = 367

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 168/374 (44%), Gaps = 33/374 (8%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           K+DL+A+  N   + + +    +T AVVK NAYG G  ++A  + +  V  F V++++E 
Sbjct: 12  KVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHV-SKQVDGFCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR    +  I +L  + P    +    N+   ++S+  L    K     +     ++V
Sbjct: 71  LELRQAGIEQPILILGVVLPDGVPLAIQENISLTVASLEWLALAQKQGLDLIGLTCHIKV 130

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           D+G  R+G+ +L++A +       K LG  +  I +H A AD+        QL  F  L+
Sbjct: 131 DSGMGRIGVRNLKDADNLIAGL--KALGADVEGIFTHFATADEADDSKFKRQLSFFTDLV 188

Query: 187 SHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAE 239
            +     + + AS +++S  +      F   R G+ +YG       +   + +Q  ++ E
Sbjct: 189 DNLTDRPRLVHASNSATS--IWHAATVFNTVRLGVVIYGLNPSGSVLELPYNIQPALSLE 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +I ++   AG+ V YG     T + +I    IGYADG+   L G              
Sbjct: 247 TALIHVKTLPAGQDVGYGATYTTTAEEVIGTLPIGYADGWTRDLQGFHV----------- 295

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G + PI+G+++MD     +     +  G  + + G +    I   +VA   GT NY
Sbjct: 296 -IVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAEKRGTINY 352

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +  R  + Y
Sbjct: 353 EVLCLLSDRVPRSY 366


>gi|270292352|ref|ZP_06198563.1| alanine racemase [Streptococcus sp. M143]
 gi|270278331|gb|EFA24177.1| alanine racemase [Streptococcus sp. M143]
          Length = 374

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 158/372 (42%), Gaps = 31/372 (8%)

Query: 11  IDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M + +       AVVK NAYG G   +A A+    V  F V++++E +
Sbjct: 20  IYLGAIRQNIQQMGDHIPKGTLKWAVVKANAYGHGAVAVATAI-QEDVDGFCVSNIDEAI 78

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I +L         +  + ++   ++ V  +       +        L++D
Sbjct: 79  ELRQAGLSKKILILGVSEIDAIALAKEYDITLTVAGVEWIQALLDKEADLTGLTVHLKID 138

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G  R+G       +       +   ++  I +H A AD+ S    + QLERF+ +++  
Sbjct: 139 SGMGRIGFREAGEAEQAQALLQQHGARVEGIFTHFATADEESDAYFNTQLERFKAILASM 198

Query: 190 KGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVVTAEAR 241
           K + E   AS+S   L   +H    F   R G S+YG     + +N  + +   +T E+ 
Sbjct: 199 KEVPELVHASNSATTL---WHAETIFNAVRMGDSMYGLNPSGEVLNLPYDLTPALTLESA 255

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ ++   AG  + YG   +   + +IA   IGYADG+   +                  
Sbjct: 256 LVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFTV------------L 303

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDL 357
           + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT NY++
Sbjct: 304 VDGQACPIVGRVSMDQITIRLPKVYPL--GTKVTLIGSNEDKEITATQVATYRGTINYEV 361

Query: 358 LVRIGTRYAKFY 369
           +  +  R  + Y
Sbjct: 362 VCLLSDRIPREY 373


>gi|291166386|gb|EFE28432.1| alanine racemase [Filifactor alocis ATCC 35896]
          Length = 388

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 171/385 (44%), Gaps = 47/385 (12%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L  L+ N+ ++  L +   +   V+K NAYG G  +IA    N G+    V++++E 
Sbjct: 10  EINLDTLEQNYKNLKQLITHKTKVCCVLKANAYGHGSVEIAKLYENMGIDYIAVSNMDEA 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR    +  I  L  +   Q + +   N+ IP+ +    +   +  +         ++
Sbjct: 70  LELRNAGIKLPITCLSFVPEYQYEELLKNNIDIPIYTLSQGIALNNIALKHQKVANVHIK 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSHVNSVQL 179
           +D+G +R+G          ++   + + QLS         I +H A AD+        Q 
Sbjct: 130 IDSGMSRIGF-------LCNDMAIRDIKQLSRLDGLHFKGIFTHFARADERDKFHTQKQF 182

Query: 180 ERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG------GTDKINK 228
             F  LI   +    +       +++  +  P YH  + R GI+L+G       ++K   
Sbjct: 183 YVFSKLIQSLEKQNITFDIRHCCNTAATICYPEYHLDMVRLGIALFGYYPSKEVSEKNVN 242

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL--IAVAAIGYADGYPLTLSGL 286
             P  ++ +  + + ++ K   G  VSY G K + +D    IA   IGYADG+   LS  
Sbjct: 243 IKPAMSLFSTISNLKVVEK---GTGVSY-GHKYIVQDDYEKIATIPIGYADGFSRALSN- 297

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLD 344
                 + ++     IKG   PI+G + MD +M  +  S    +GD + I+    D+ ++
Sbjct: 298 ------NCYVK----IKGDKYPIVGNVCMDQSMIRLDISKEFNIGDKVVIYSDEQDMSVE 347

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            +A A GT +Y++L  +  R  + +
Sbjct: 348 RLAKAMGTISYEVLCMMQRRIPRIF 372


>gi|332638810|ref|ZP_08417673.1| alanine racemase [Weissella cibaria KACC 11862]
          Length = 371

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 140/348 (40%), Gaps = 40/348 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I   A+ +N   +   S  +     VK NAYG G   ++ A    G+    V  ++E
Sbjct: 10  RLNISQAAVTHNIQEVRQASQASFMFLAVKANAYGFGLIPMSQAAVAGGIDGLAVALLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           G+ LR         +L    P   ++I + NLI  + S+  L    + +   G      L
Sbjct: 70  GLALRQAGLTEPTLILGITLPQYARLIAENNLIATVGSLAWLEAALQYLPVNGQRLQVNL 129

Query: 127 QVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            VDTG  R+G      L+ A+ F     +++    + I++H A AD P       QL R+
Sbjct: 130 AVDTGMGRIGFRERTELEAAIAFMDE--HREAFTYASIMTHFAEADAPEVDYFHQQLNRW 187

Query: 183 RTLISHYKGIE----ASLASSSGILLGPNYHFQ-----LTRPGISLYG---GTDKINKSH 230
             L     GIE      LA+S   +    YH       + R G  +YG      ++    
Sbjct: 188 HALTD---GIEMPPLVHLANSGAAM----YHADEMPTDVIRAGTVVYGVEPSRGELRSDD 240

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V+T E  ++ ++K   GE VSYG          I    +GY DG P  L G +   
Sbjct: 241 YLEPVLTLETELVFVKKCHEGEGVSYGHTYYAHEGEWIGTVPLGYGDGLPRKLQGFEV-- 298

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                      + G   PI+GK+ MD  M  +   L I  G  + I G
Sbjct: 299 ----------IVDGVKRPIVGKLAMDQMMISLPYELPI--GTTVTIIG 334


>gi|311111926|ref|YP_003983148.1| alanine racemase [Rothia dentocariosa ATCC 17931]
 gi|310943420|gb|ADP39714.1| alanine racemase [Rothia dentocariosa ATCC 17931]
          Length = 437

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 169/389 (43%), Gaps = 36/389 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   +  + G  +  AVVK +AYG G   +A ++  AG     V  V E ++
Sbjct: 24  IDLNALEHNTRVLKDMIGERKLIAVVKADAYGHGAYPVARSVLEAGADILGVVHVTEALE 83

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA---L 126
           LR     A I     +H  Q    FD  L   +I         +   +   +   A   L
Sbjct: 84  LRSEGITAPIIAW--LHTPQTD--FDEALEADIILGASGWDLEAIAEAANRTKKRARVHL 139

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +VDTG  R G + ++       +   +   L ++  I SHLA AD+P     + Q+ R  
Sbjct: 140 KVDTGLGRNGSTFEDWPALVARALELEAAGLVRIEGIFSHLAVADEPERPETARQITRLN 199

Query: 184 TLISHYK--GIEASL---ASSSGILLG--PNYHFQ------LTRPGISLYGGTDKI---N 227
             ++  +  G+   L   A+S G + G  P Y+          R GI+LYG +      +
Sbjct: 200 EFVTVARSAGLTPELVHLANSPGTITGASPLYNTNEAVLADAVRCGIALYGLSPLAGVSS 259

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           K   ++ V+T    +  +++  AG+ VSYG +    + + +A+  +GYADG P    G  
Sbjct: 260 KDLNLRPVMTLGTHVCNVKEVPAGQGVSYGLRYSTDKPTTLALIPLGYADGVPRIAEGAP 319

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD-----ITDSLSIEVGDYIQIFGP--D 340
               P          + Y V  +G+I MD  + D     + D     +G    +FG   +
Sbjct: 320 VRIYPRADAANPVEPRTYRV--VGRIAMDQLVVDLEEPGLADPARGILGGSAVLFGSGDN 377

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             +++ A A+ T NY+++ RI  R  + Y
Sbjct: 378 PPVEEWAAAAQTINYEIVTRISPRVIRIY 406


>gi|148984140|ref|ZP_01817435.1| alanine racemase [Streptococcus pneumoniae SP3-BS71]
 gi|147923429|gb|EDK74542.1| alanine racemase [Streptococcus pneumoniae SP3-BS71]
 gi|301800506|emb|CBW33145.1| alanine racemase [Streptococcus pneumoniae OXC141]
          Length = 367

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 169/381 (44%), Gaps = 43/381 (11%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++
Sbjct: 10  KVLIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNID 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           E ++LR       I +L G+   +   +   +D  L     +V  L +   L+   V   
Sbjct: 69  EAIELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLT 122

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLE
Sbjct: 123 GLTVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLE 182

Query: 181 RFRTLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPM 232
           RF+T+++  K + E   AS+S   L   +H    F   R G ++YG       +N  + +
Sbjct: 183 RFKTILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLNLPYDL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         
Sbjct: 240 IPALTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
           SV + G+        PI+G+++MD     +     +  G  + + G     +I    VA 
Sbjct: 294 SVLVDGQA------CPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVAT 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY+++  +  R  + Y
Sbjct: 346 YRVTINYEVVCLLSDRIPREY 366


>gi|262369147|ref|ZP_06062476.1| alanine racemase 2 [Acinetobacter johnsonii SH046]
 gi|262316825|gb|EEY97863.1| alanine racemase 2 [Acinetobacter johnsonii SH046]
          Length = 365

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 172/371 (46%), Gaps = 45/371 (12%)

Query: 15  ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           +L++N +       N++  AVVK NAYG G E++  A  +A    F +  + E  ++R  
Sbjct: 13  SLQHNLNVARTKMPNSQVYAVVKANAYGHGIERVYQAFKSA--DGFALLDLAEAKRIRAL 70

Query: 75  TPQARIFVLYGIHPGQEKIIFDTNLIPV---ISSVPQLTFYSKLMSCGVSHPYALQVDTG 131
                I +L GI   Q+  +FD + + +   I S  QL + ++         Y L++++G
Sbjct: 71  GWTGPILLLEGIFSEQD--LFDCHELGLSFSIHSEYQLEWLARFPLEAQFDVY-LKMNSG 127

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSV--QLERFRT 184
            NRLG   ++     +    ++L  LS +     + H + AD      + +  Q + F  
Sbjct: 128 MNRLGFRPEQ-----YRQVWQQLSSLSQVQRLTHMMHFSDADGERFGRDGIAHQCQLFDA 182

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-----MQTVVTAE 239
           +     G   S+++S+ IL        + R GI LYG +     SH      +Q  ++  
Sbjct: 183 ITHDLPGAR-SVSNSAAILRHGQLQSDVIRSGIMLYGSSPDY-PSHSIQDWDLQPAMSLR 240

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP-LTLSGLDSEHSPSVFLGG 298
           + +I I++  AG+ V YG +     D  + + A GYADGY  +T +G     +P +    
Sbjct: 241 SELIAIQQLKAGDSVGYGSKFIAETDMRVGIVACGYADGYQRITATG-----TPIL---- 291

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTT 353
              + G    ++G+++MDM   D++   + +VG  + ++G       + +D+VA  SGT 
Sbjct: 292 ---VDGQRSSLVGRVSMDMLAVDLSHLPNAQVGSEVVLWGTSKQGTVLSIDEVAAGSGTI 348

Query: 354 NYDLLVRIGTR 364
            Y+L+  +  R
Sbjct: 349 GYELMCAVTAR 359


>gi|229131246|ref|ZP_04260152.1| Alanine racemase [Bacillus cereus BDRD-ST196]
 gi|228652237|gb|EEL08168.1| Alanine racemase [Bacillus cereus BDRD-ST196]
          Length = 389

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEYIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +   K  G+       A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLRWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGY DG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYGDGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVNGERVPIVGRVTMDQFMIHL--PCEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|119025514|ref|YP_909359.1| alanine racemase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765098|dbj|BAF39277.1| alanine racemase [Bifidobacterium adolescentis ATCC 15703]
          Length = 452

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 171/408 (41%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTA----AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL AL++N   + ++ G   +      +VK +AYG G    A A    G          
Sbjct: 33  VDLAALRDNMRHLVSVVGGPHSGTAVMGIVKADAYGHGLVPAALAALAGGATWLGTAQSH 92

Query: 67  EGVKLRL--YTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FYSKLMSCGV 120
           E + LR     P  R  +L  ++ G E     + D ++   + S+  +    +     G 
Sbjct: 93  EALLLRKAGIGPD-RCHILTWVYSGAEVPFDELVDNDIDISVGSLAGIDGVAAAARRLGK 151

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
           +    ++VD+GF R G        FT   F+  L +L  +            SHLA AD 
Sbjct: 152 TARVHVKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 203

Query: 170 PSS----HVNSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P          +Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVASTDMQVETFKDFTRRMEAAGIPPEIRHLANTAATLSRPEIHFELTRPGIGLY 263

Query: 221 GGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    ++  +T +A++  ++   AG  +SYG       D+  A+  +GYA
Sbjct: 264 GYEADPAMGTPSTYSLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPSDTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFIKGYMVPIL----GKITMDMTMFDITDS---LSI 328
           DG   + SG D E +  V   GG   +     P L    G++ MD  + D+  S   L I
Sbjct: 324 DGIHRSASGFDMEGAKHVTKPGGPVRVMTSEGPRLYRVSGRVCMDQFILDLHGSAAELGI 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD   A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDNVELFGPGRGEDYAEPTADDWGHAADTISYEIFTCLRNRIPRLY 431


>gi|300812106|ref|ZP_07092554.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496945|gb|EFK32019.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 376

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 143/328 (43%), Gaps = 34/328 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+L A+K N     A L    +   VVK NAYG G  ++AP +  AG   F V  ++E
Sbjct: 11  LHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGADGFCVAMLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSK-LMSCGVSHPYA 125
           G++LR       I VL G+ P +E  +   N I + +SS+  L    K L   G+     
Sbjct: 71  GLELRRVQIVKPILVL-GLQPAEEAALAAANDISLPVSSLDWLKKAEKVLRKEGLQLKIH 129

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLII----SHLACADDPSSHVNSVQLE 180
           L +D+G  R+G S  E  DF   + N+ L G  +  +    +H A AD   +     Q++
Sbjct: 130 LAIDSGMGRIGFSEDE--DF--KAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHP 231
           RF+ + S    K     + +++  L G +    + R GI LYG       G+  +  +  
Sbjct: 186 RFKHMESLLTVKPKWIHVDNTAASLFGKDVASDIVRFGIGLYGLNPSSAPGSQDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTM 319
                  K  +     PI+G++ MD  M
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFM 321


>gi|188595863|pdb|2VD9|A Chain A, The Crystal Structure Of Alanine Racemase From Bacillus
           Anthracis (Ba0252) With Bound L-Ala-P
 gi|188595864|pdb|2VD9|B Chain B, The Crystal Structure Of Alanine Racemase From Bacillus
           Anthracis (Ba0252) With Bound L-Ala-P
          Length = 391

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 3   MEEAPFYRDTWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVKGNAYGHDYVPVAXIALEAG 62

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +     L 
Sbjct: 63  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQXEWVDEAIXLW 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  + E   F  +       +L  + +H A AD+  +   
Sbjct: 123 DGSSTMXYHINFDSGMGRIGIRERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYF 182

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S     G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 183 DXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 242

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++    +  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 243 FLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGF 302

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 303 EV------------LVNGXRVPIVGRVTMDQFMIHL--PCEVPLGTXVTLIGRQGDEYIS 348

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 349 ATEVAEYSGTINYEIITTISFRVPRIF 375


>gi|322375697|ref|ZP_08050209.1| alanine racemase [Streptococcus sp. C300]
 gi|321279405|gb|EFX56446.1| alanine racemase [Streptococcus sp. C300]
          Length = 367

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 165/378 (43%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IYLGAIRQNIQQMGAHIPEGTLKWAVVKANAYGHGAVAVAMAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVL-----YGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHP 123
           +LR      +I +L       I   +E   +D  L +  +  +  L      +S    H 
Sbjct: 72  ELRQAGLSKKILILGVSEIEAIALAKE---YDITLTVAGVEWIQALLARETDLSSLTVH- 127

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G       +       +   ++  I +H A AD+ S    + QLE F+
Sbjct: 128 --LKIDSGMGRIGFREASEAEQAQTMLQQHGARVEGIFTHFATADEESDAYFNAQLECFK 185

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTV 235
            +++  K + E   AS+S   L   +H    F   R G ++YG     + ++  + +   
Sbjct: 186 AILASMKEVPELVHASNSATTL---WHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLTPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 243 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + +     G +I    VA   G
Sbjct: 297 VDGQA------CPIVGRVSMDQITIRLPKIYPL--GTKVTLIGTNGGKEITATQVATYRG 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 349 TINYEVVCLLSDRIPREY 366


>gi|315149610|gb|EFT93626.1| alanine racemase [Enterococcus faecalis TX0012]
          Length = 371

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 163/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F VT ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVETAKAAKKGGATGFCVTLLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|124268746|ref|YP_001022750.1| alanine racemase [Methylibium petroleiphilum PM1]
 gi|166969417|sp|A2SLS6|ALR_METPP RecName: Full=Alanine racemase
 gi|124261521|gb|ABM96515.1| Alanine racemase [Methylibium petroleiphilum PM1]
          Length = 367

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 159/371 (42%), Gaps = 38/371 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL +N     A   +AR  AVVK +AYG G  ++  AL  A    F +  + E  +
Sbjct: 9   IHAEALTHNLARARAAVPDARVWAVVKAHAYGHGIARVFEALRAA--DGFALLDLAEAQQ 66

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    +  I +L G+  P   ++    NL   +    Q+ + + +      H   L+++
Sbjct: 67  LRDLGWRGPILLLEGVFEPRDLELCSRLNLWHTVHCEAQIDWLA-MHKTHQPHRVFLKMN 125

Query: 130 TGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +G NRLG    + + A    H     ++ ++SL+ SH + AD       ++Q+  F    
Sbjct: 126 SGMNRLGFRPAAFRAAWTRLHAL--PQVDEISLM-SHFSDADGGRGIAAAMQV--FDDAT 180

Query: 187 SHYKGIEASLASSSGIL---LGPNYHFQLTRPGISLYGGTDKINKSHP-----MQTVVTA 238
               G E SL +S+  L             R GI LYG       SH      +Q  +T 
Sbjct: 181 RDLPG-ERSLCNSAATLRHGADAAVRADWVRAGIMLYGSAPDF-PSHDIAHWDLQPTMTL 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            AR+I  +   AG+ V YG +        I V A GYADGYP         H+PS   G 
Sbjct: 239 RARLIGTQDLQAGDTVGYGSRFTAEAPMRIGVVACGYADGYP--------RHAPS---GT 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTT 353
              + G    ++G+++MDM   D+        G  + ++G       + +D+VA A+GT 
Sbjct: 288 PVLVDGVRTRLVGRVSMDMVTVDLGGLPQAARGSEVTLWGRASSGAVLPIDEVAHAAGTV 347

Query: 354 NYDLLVRIGTR 364
            Y+ +  +  R
Sbjct: 348 GYEPMCALAAR 358


>gi|294787104|ref|ZP_06752358.1| alanine racemase [Parascardovia denticolens F0305]
 gi|315226756|ref|ZP_07868544.1| alanine racemase [Parascardovia denticolens DSM 10105]
 gi|294485937|gb|EFG33571.1| alanine racemase [Parascardovia denticolens F0305]
 gi|315120888|gb|EFT84020.1| alanine racemase [Parascardovia denticolens DSM 10105]
          Length = 451

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 173/410 (42%), Gaps = 62/410 (15%)

Query: 11  IDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL  L++N  +M    +A+S +     VVK +AYG G    A A    G          
Sbjct: 32  VDLATLRDNMKAMVDRVHAVSPSTAVLGVVKADAYGHGLLPTALAALAGGATWLGTAQSR 91

Query: 67  EGVKLR---LYTPQARI--FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           E + LR   +   +ARI  ++  G     +++I     + V S              G  
Sbjct: 92  EALLLRQKGVGPDRARIITWLYNGRQDPFDRLISQDIDLAVGSLAGIDAIVRGAQKIGRP 151

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL---------GQLSLI--ISHLACADDP 170
               ++VDTGF R G        FT   F++ L         GQL ++   SHL+ AD P
Sbjct: 152 ARVHVKVDTGFGRNG--------FTPEEFDQALTRLRQGVDAGQLEVVGQWSHLSVADAP 203

Query: 171 ----SSHVNSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYG 221
               S      Q+  F       K  G+  S   LA+++     P  +F+L RPG+ LYG
Sbjct: 204 EDPASRRATDDQIALFNEFTDRMKVAGLPPSIRHLANTAATFTRPEIYFELVRPGVGLYG 263

Query: 222 -GTDKI---NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
              D +    + + ++  +T +A++  ++   AG  +SYG       ++  A   +GYAD
Sbjct: 264 YEPDPVMGTGEDYGLKPAMTLQAQLGTVKNLPAGHSISYGRTYLTEGETSTADLPLGYAD 323

Query: 278 GYPLTLS--------GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI---TDSL 326
           G P + S        G+D    P   +  +G     +V + G++ MD  + D+    +  
Sbjct: 324 GIPRSASGFNRAGALGVDHPGGPVRIMTNQG---PRLVRVSGRVCMDQCILDLHGSAEDW 380

Query: 327 SIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +  GD +++FGP       +   DD A A+GT +Y++   +  R  + Y
Sbjct: 381 GVSEGDTVELFGPGRGEAYAEPTADDWARAAGTISYEIFTCLRNRIPRLY 430


>gi|312133175|ref|YP_004000514.1| alr [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772373|gb|ADQ01861.1| Alr [Bifidobacterium longum subsp. longum BBMN68]
          Length = 450

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 175/408 (42%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNW-HSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL  +++N  H ++ + G A   AV   VK +AYG G    A A    G          
Sbjct: 31  VDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGATWLGTAQSH 90

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQL-TFYSKLMSCGV 120
           E + LR L     R  +L  ++ G E + FD     ++   + S+P +    +     G 
Sbjct: 91  EALLLRKLGIGPDRCHILTWVYNGTE-VPFDELIAADIDVSVGSLPGIDAVAAAARKLGK 149

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
                ++VD+GF R G        FT   F+  L +L  +            SHLA AD 
Sbjct: 150 PARVHVKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 201

Query: 170 P--SSHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P  S  V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 202 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 261

Query: 221 GGTDKINKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    +T     +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 262 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 321

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSI 328
           DG   + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +
Sbjct: 322 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 381

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 429


>gi|301067541|ref|YP_003789564.1| alanine racemase [Lactobacillus casei str. Zhang]
 gi|300439948|gb|ADK19714.1| Alanine racemase [Lactobacillus casei str. Zhang]
          Length = 378

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 158/379 (41%), Gaps = 36/379 (9%)

Query: 8   RLKIDLTA-LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ ID TA L N  H +  L    +  AVVK +AYG G  ++A     AG   F V  ++
Sbjct: 10  KVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHP-- 123
           E + LR       + VL GI P Q   I     I + +SS   L     ++      P  
Sbjct: 70  EALGLRKADYSEPVLVL-GIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELPPL 128

Query: 124 -YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
              L +DTG  R+G +  +AL            Q  +  I +H A AD P       Q++
Sbjct: 129 RIHLALDTGMGRIGFTEDQALKTAVAFVEAHSKQFVIEGIFTHFATADAPDDTYFKQQVD 188

Query: 181 RFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPM 232
           +F  L+    S  + +  S +++S  L     +  + R G+++YG    G        P+
Sbjct: 189 KFNHLVDLLPSRPRYVHVSNSATS--LWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +   ++  AG+ +SYG   +   D  I    IGYADG+   L G       
Sbjct: 247 EPALSLESELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGFHV---- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G    I+G+I MD  M  +  +     G  + + G     +I L DVA 
Sbjct: 303 --------LVDGQYCEIVGRICMDQFMIRLPKAYP--AGTKVVLVGQSGDQEITLLDVAK 352

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T +Y++   +  R  +
Sbjct: 353 YSKTIHYEIACNLTPRLKR 371


>gi|239622329|ref|ZP_04665360.1| alanine racemase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514326|gb|EEQ54193.1| alanine racemase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 452

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 175/408 (42%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNW-HSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL  +++N  H ++ + G A   AV   VK +AYG G    A A    G          
Sbjct: 33  VDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGATWLGTAQSH 92

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQL-TFYSKLMSCGV 120
           E + LR L     R  +L  ++ G E + FD     ++   + S+P +    +     G 
Sbjct: 93  EALLLRKLGIGPDRCHILTWVYNGTE-VPFDELIAADIDVSVGSLPGIDAVAAAARKLGK 151

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
                ++VD+GF R G        FT   F+  L +L  +            SHLA AD 
Sbjct: 152 PARVHVKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203

Query: 170 P--SSHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P  S  V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKINKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    +T     +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSI 328
           DG   + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|108763995|ref|YP_635273.1| alanine racemase [Myxococcus xanthus DK 1622]
 gi|108467875|gb|ABF93060.1| alanine racemase [Myxococcus xanthus DK 1622]
          Length = 409

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 178/391 (45%), Gaps = 51/391 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAA---VVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L++  +AL++N     AL G     A   V+K NAYG G  ++ P ++   V   +V + 
Sbjct: 26  LELSASALRHNVAVFRALEGQGAPRALGVVLKGNAYGHGLAQVLPVVHGE-VDLLYVIAP 84

Query: 66  EEGVKLRLYT------PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           ++ +K+R Y       P+ ++ VL  + P +  ++    +  V++        + L +  
Sbjct: 85  QDALKVREYERAQGLGPR-QVLVLGAVAPDEAVVLAREGVDAVVADRGWADAAAVLRAAK 143

Query: 120 VSHPYALQV--DTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHV 174
           +  P  + V  DTG  R G +L E L  T + F   ++ + ++  ++SH A  +D +   
Sbjct: 144 LERPLRVHVHLDTGLGREGFTL-EGLP-TESRFLSESRDVLEVVGVLSHFANTEDVTEQG 201

Query: 175 NSV-QLERFR-------TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK- 225
            ++ Q++ F          ++  + ++  +A+S+  L+ P   ++  R GISLYG     
Sbjct: 202 YALAQVDAFEKGLAFLSEQLAPARPLQRHIAASAATLVLPRARYEALRVGISLYGLWPSP 261

Query: 226 ---------INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
                    + +   ++ V++   R  +++   AG  V YG   +    + IAV  +GY 
Sbjct: 262 ETRLSARLVLGEVPVLKPVLSWRCRSQVVKWLSAGSYVGYGCTYRCPEPTRIAVLPVGYY 321

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           DGYP  +SG    H           + G   P+LG++ M+  + D+T + S E      +
Sbjct: 322 DGYPRLVSG--KAHV---------LVNGRRCPVLGRVMMNHLIVDVTRATSDERPVTATL 370

Query: 337 FGPD----IKLDDVALASGTTNYDLLVRIGT 363
            G D    +  + +A  + T +Y+L+ R+G 
Sbjct: 371 MGRDGEESVPAESLAGWAQTIHYELVTRLGA 401


>gi|297243200|ref|ZP_06927137.1| alanine racemase [Gardnerella vaginalis AMD]
 gi|296888849|gb|EFH27584.1| alanine racemase [Gardnerella vaginalis AMD]
          Length = 459

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 45/282 (15%)

Query: 126 LQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----HV 174
           ++VDTGF R G +       L++   ++     + +GQ S    HLA AD P        
Sbjct: 164 VKVDTGFGRNGFTPEGFSAALEKLQQYSSEGVIEVIGQWS----HLAVADSPDVPEFVDA 219

Query: 175 NSVQLERFRTLISHYKGIEAS-------LASSSGILLGPNYHFQLTRPGISLYGGTDKI- 226
              Q+++F    +  K  EAS       LA+++  L  P   F+L RPGI LYG      
Sbjct: 220 TDRQIQQFHEFTNRMK--EASVAPKIRHLANTAATLNRPEIRFELVRPGIGLYGYEPDPA 277

Query: 227 ---NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
              ++++ +Q  +T +A++  ++    G  +SYG       ++  A+  +GYADG   + 
Sbjct: 278 MGDSQTYGLQPAMTLQAQLGTVKAVEEGHGISYGRTYLTPNNTSTAIVPLGYADGILRSA 337

Query: 284 SGLDSEHSPSVFLGGKGFIK------GYMVPILGKITMDMTMFDI---TDSLSIEVGDYI 334
           SG D + +  V   G G ++        ++ + G++ MD  + D+      L +  GD +
Sbjct: 338 SGFDMQGARHVDKQG-GPVRVETNKGARILNVSGRVCMDQFIVDLKGDAAELGVREGDTV 396

Query: 335 QIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +FGP       +   DD A A+GT +Y+++  IG R  + Y
Sbjct: 397 TLFGPGRGVEFAEPTADDWAEAAGTISYEIMTGIGPRVPRLY 438


>gi|189439769|ref|YP_001954850.1| slanine racemase [Bifidobacterium longum DJO10A]
 gi|189428204|gb|ACD98352.1| Alanine racemase [Bifidobacterium longum DJO10A]
          Length = 450

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 175/408 (42%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNW-HSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL  +++N  H ++ + G A   AV   VK +AYG G    A A    G          
Sbjct: 31  VDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGATWLGTAQSH 90

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQL-TFYSKLMSCGV 120
           E + LR L     R  +L  ++ G E + FD     ++   + S+P +    +     G 
Sbjct: 91  EALLLRKLGIGPDRCHILTWVYNGTE-VPFDELIAADIDVSVGSLPGIDAVAAAARKLGK 149

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
                ++VD+GF R G        FT   F+  L +L  +            SHLA AD 
Sbjct: 150 PARVHVKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 201

Query: 170 P--SSHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P  S  V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 202 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 261

Query: 221 GGTDKINKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    +T     +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 262 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTLDNTSTAIVPLGYA 321

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSI 328
           DG   + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +
Sbjct: 322 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 381

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 429


>gi|46190837|ref|ZP_00120988.2| COG0787: Alanine racemase [Bifidobacterium longum DJO10A]
          Length = 452

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 175/408 (42%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNW-HSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL  +++N  H ++ + G A   AV   VK +AYG G    A A    G          
Sbjct: 33  VDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGATWLGTAQSH 92

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQL-TFYSKLMSCGV 120
           E + LR L     R  +L  ++ G E + FD     ++   + S+P +    +     G 
Sbjct: 93  EALLLRKLGIGPDRCHILTWVYNGTE-VPFDELIAADIDVSVGSLPGIDAVAAAARKLGK 151

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
                ++VD+GF R G        FT   F+  L +L  +            SHLA AD 
Sbjct: 152 PARVHVKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203

Query: 170 P--SSHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P  S  V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKINKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    +T     +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTLDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSI 328
           DG   + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|28899622|ref|NP_799227.1| alanine racemase [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807874|dbj|BAC61111.1| putative alanine racemase [Vibrio parahaemolyticus RIMD 2210633]
          Length = 392

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 147/353 (41%), Gaps = 50/353 (14%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID  A  NN   +   L GN +  A++K +AYG G   + P++    V    +TS EE
Sbjct: 31  LEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSNEE 90

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R +  + +I  +      + +      +  +I +  Q     +++    ++   + 
Sbjct: 91  ARVVREHGFEGKIMRVRAASRNEIENGVQYEIEELIGTKMQA---DQIIEIAYNYNTVIP 147

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  LD T        GQ    +  +  A DP+       +H  +  L+
Sbjct: 148 VHLALNTSGMG-RNGLDLTTYE-----GQ----VEGVEIASDPNLKIVGMMTHFPNEGLD 197

Query: 181 RFRTLISHYKGIEASLASSSGI---------------LLGPNYHFQLTRPGISLYGGTDK 225
             R  +  +K     L  S+G+               L  P  H  + RPG  LYG    
Sbjct: 198 EIRRKVDRFKVETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYG---D 254

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
              + P + +V+ + RI  +    AG  + YG  K L RDS++A   IGY+DG+  +LS 
Sbjct: 255 YPATLPYERIVSFKTRIASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN 314

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                           I G    ++GK +M+ TM D+TD + ++  D + +FG
Sbjct: 315 -----------KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFG 356


>gi|256617722|ref|ZP_05474568.1| alanine racemase [Enterococcus faecalis ATCC 4200]
 gi|257089263|ref|ZP_05583624.1| alanine racemase [Enterococcus faecalis CH188]
 gi|312904409|ref|ZP_07763569.1| alanine racemase [Enterococcus faecalis TX0635]
 gi|256597249|gb|EEU16425.1| alanine racemase [Enterococcus faecalis ATCC 4200]
 gi|256998075|gb|EEU84595.1| alanine racemase [Enterococcus faecalis CH188]
 gi|310632236|gb|EFQ15519.1| alanine racemase [Enterococcus faecalis TX0635]
 gi|315577240|gb|EFU89431.1| alanine racemase [Enterococcus faecalis TX0630]
          Length = 371

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 163/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PVLRLTSELIHVKRLAAGEGIGYGETYVTESEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|260364032|ref|ZP_05776760.1| alanine racemase [Vibrio parahaemolyticus K5030]
 gi|260876638|ref|ZP_05888993.1| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|260898078|ref|ZP_05906574.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|260902333|ref|ZP_05910728.1| alanine racemase [Vibrio parahaemolyticus AQ4037]
 gi|308085806|gb|EFO35501.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|308093954|gb|EFO43649.1| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|308110937|gb|EFO48477.1| alanine racemase [Vibrio parahaemolyticus AQ4037]
 gi|308114571|gb|EFO52111.1| alanine racemase [Vibrio parahaemolyticus K5030]
          Length = 404

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 147/353 (41%), Gaps = 50/353 (14%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID  A  NN   +   L GN +  A++K +AYG G   + P++    V    +TS EE
Sbjct: 43  LEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSNEE 102

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R +  + +I  +      + +      +  +I +  Q     +++    ++   + 
Sbjct: 103 ARVVREHGFEGKIMRVRAASRNEIENGVQYEIEELIGTKMQA---DQIIEIAYNYNTVIP 159

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  LD T        GQ    +  +  A DP+       +H  +  L+
Sbjct: 160 VHLALNTSGMG-RNGLDLTTYE-----GQ----VEGVEIASDPNLKIVGMMTHFPNEGLD 209

Query: 181 RFRTLISHYKGIEASLASSSGI---------------LLGPNYHFQLTRPGISLYGGTDK 225
             R  +  +K     L  S+G+               L  P  H  + RPG  LYG    
Sbjct: 210 EIRRKVDRFKVETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYG---D 266

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
              + P + +V+ + RI  +    AG  + YG  K L RDS++A   IGY+DG+  +LS 
Sbjct: 267 YPATLPYERIVSFKTRIASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN 326

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                           I G    ++GK +M+ TM D+TD + ++  D + +FG
Sbjct: 327 -----------KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFG 368


>gi|297517360|ref|ZP_06935746.1| alanine racemase [Escherichia coli OP50]
          Length = 255

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 127/265 (47%), Gaps = 27/265 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++
Sbjct: 5   IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPL 118

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+V++G NRLG      L           +G+++L +SH A A+ P     ++    
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTL-MSHFAEAEHPDGISGAMA--- 174

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT------DKINKSHPMQ 233
              +    +G+E   SL++S+  L  P  HF   RPGI LYG +      D  N    ++
Sbjct: 175 --RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG--LR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGG 258
            V+T  + II ++   AGE V YGG
Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGG 255


>gi|167033190|ref|YP_001668421.1| alanine racemase [Pseudomonas putida GB-1]
 gi|166859678|gb|ABY98085.1| alanine racemase [Pseudomonas putida GB-1]
          Length = 409

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 152/349 (43%), Gaps = 41/349 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++  +AL++N  ++ A L+G ++  AV+K +AYG G   + P++   GV    V S EE
Sbjct: 46  VEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAVASNEE 105

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
              +R   +T Q     L  +   ++ + +D   +     V    F  ++ +    H   
Sbjct: 106 ARVVRASGFTGQLVRVRLASLSELEDALQYDMEEL-----VGSAEFARQVDAIAARHGKT 160

Query: 126 LQVDTGFNRLGLSLQ-----------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L++    N  G+S             EAL  T    ++K  +L  +++H A  D      
Sbjct: 161 LRIHMALNSSGMSRNGVEMGSWSGRGEALQIT----DQKHLELVALMTHFAVEDKDDVRK 216

Query: 175 NSVQL-ERFRTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
                 E+   LI H K   + L    A+S   L  P     + R G +L+G  D + + 
Sbjct: 217 GLAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPER 274

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  +  ++ +  +    AG  V Y     LTRDS +A   +GY+DGY    +     
Sbjct: 275 TEYKRAMQFKSHVAAVHSYPAGNTVGYDRTFTLTRDSRLANITVGYSDGYRRVFTN---- 330

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                   G   I G+ VP++GK++M+  M D+TD   ++ G+ + +FG
Sbjct: 331 -------KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFG 372


>gi|149021206|ref|ZP_01835452.1| alanine racemase [Streptococcus pneumoniae SP23-BS72]
 gi|147930307|gb|EDK81291.1| alanine racemase [Streptococcus pneumoniae SP23-BS72]
          Length = 367

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 167/378 (44%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVNGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 72  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF+
Sbjct: 126 VHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERFK 185

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 186 TILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ I+   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 243 LTLESALVHIKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 297 VDGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRV 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 349 TINYEVVCLLSDRIPREY 366


>gi|298252575|ref|ZP_06976369.1| alanine racemase [Gardnerella vaginalis 5-1]
 gi|297532939|gb|EFH71823.1| alanine racemase [Gardnerella vaginalis 5-1]
          Length = 442

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 45/282 (15%)

Query: 126 LQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----HV 174
           ++VDTGF R G +       L++   ++     + +GQ S    HLA AD P        
Sbjct: 147 VKVDTGFGRNGFTPEGFCAALEKLQQYSSEGVIEVIGQWS----HLAVADSPDVPEFVDA 202

Query: 175 NSVQLERFRTLISHYKGIEAS-------LASSSGILLGPNYHFQLTRPGISLYGGTDKI- 226
              Q+++F       K  EAS       LA+++  L  P   F+L RPGI LYG      
Sbjct: 203 TDRQIQQFHEFTKRMK--EASVAPKIRHLANTAATLNRPEIRFELVRPGIGLYGYEPDPA 260

Query: 227 ---NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
              ++++ +Q  +T +A++  ++    G  +SYG       ++  A+  +GYADG   + 
Sbjct: 261 MGNSQTYGLQPAMTLQAQLGTVKTVEEGHGISYGRTYLTPNNTSTAIVPLGYADGILRSA 320

Query: 284 SGLDSEHSPSVFLGGKGFIK------GYMVPILGKITMDMTMFDI---TDSLSIEVGDYI 334
           SG D + +  V   G G ++        +V + G++ MD  + D+      L +  G+ +
Sbjct: 321 SGFDMQGARHVNKPG-GPVRVETKNGARIVNVSGRVCMDQFIVDLKGDASELGVLEGNTV 379

Query: 335 QIFGPDIKL-------DDVALASGTTNYDLLVRIGTRYAKFY 369
            +FGP   L       DD A A+GT +Y+++  IG R  + Y
Sbjct: 380 TLFGPGRGLEFAEPTADDWAEAAGTISYEIMTGIGARVPRLY 421


>gi|325681053|ref|ZP_08160585.1| alanine racemase [Ruminococcus albus 8]
 gi|324107282|gb|EGC01566.1| alanine racemase [Ruminococcus albus 8]
          Length = 374

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 159/374 (42%), Gaps = 31/374 (8%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67
           +IDL+A++ N      L         VVK   YG     I P L    G + F V  ++E
Sbjct: 10  EIDLSAVEYNVTEYKKLLPAGTELMYVVKAACYGHDDSLIVPFLQEKLGAEYFAVADLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            ++LR       I +L    P    +I   N+I   + +      SK     V    A  
Sbjct: 70  AIRLRGMGISGDILILGYTLPEYAPLIAKHNVIQACTDLSYARELSKNAEGTVRVHGA-- 127

Query: 128 VDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHL------ACADDPSSHVNSVQ 178
           VDTG  R+G+   + ++A + +  +    +  L  I +H       A ADD  +++ + +
Sbjct: 128 VDTGMTRIGVHGTAEEQAAELSEIAATPNIA-LEGIFTHFSSADGTAQADDDYTNMQAER 186

Query: 179 LERFRTLISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT- 234
             R R L++   GIE   A + +S+G   G      L R GI +YG      K  P +  
Sbjct: 187 FFRVRDLLTA-GGIELKHAHIKNSAGGAYGFGEGSTLARLGIIMYGLYPDPAKPLPFEPK 245

Query: 235 -VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T +A +  ++   AG  VSYG      R   +A    GYADGYP  LS     +   
Sbjct: 246 PVMTWKAVVSQVKWIDAGTAVSYGRTFVSDRRMKLATITAGYADGYPRALS-----NKGE 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
           V +GGK         I G++ MD  M D+TD   I  GD   +   ++  D +A  +GT 
Sbjct: 301 VIIGGK------RCRICGRVCMDQFMCDVTDLPDIRSGDEAILMDAEMNADHLAALTGTI 354

Query: 354 NYDLLVRIGTRYAK 367
            Y++   I  R  +
Sbjct: 355 GYEITCGISPRVPR 368


>gi|256964328|ref|ZP_05568499.1| alanine racemase [Enterococcus faecalis HIP11704]
 gi|307271848|ref|ZP_07553116.1| alanine racemase [Enterococcus faecalis TX0855]
 gi|256954824|gb|EEU71456.1| alanine racemase [Enterococcus faecalis HIP11704]
 gi|306511354|gb|EFM80356.1| alanine racemase [Enterococcus faecalis TX0855]
          Length = 371

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 163/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    GV  F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGVTGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|239630389|ref|ZP_04673420.1| alanine racemase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526672|gb|EEQ65673.1| alanine racemase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 378

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 158/379 (41%), Gaps = 36/379 (9%)

Query: 8   RLKIDLTA-LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ ID TA L N  H +  L    +  AVVK +AYG G  ++A     AG   F V  ++
Sbjct: 10  KVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHP-- 123
           E + LR       + VL GI P Q   I     I + +SS   L     ++      P  
Sbjct: 70  EALGLRKADYSEPVLVL-GIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELPPL 128

Query: 124 -YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
              L +DTG  R+G +  +AL            Q  +  I +H A AD P       Q++
Sbjct: 129 RIHLALDTGMGRIGFTEDQALKTAVAFVEAHSKQFVIEGIFTHFATADAPDDTYFKQQVD 188

Query: 181 RFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPM 232
           +F  L+    S  + +  S +++S  L     +  + R G+++YG    G        P+
Sbjct: 189 KFNHLVDLLPSRPRYVHVSNSATS--LWHAVCNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +   ++  AG+ +SYG   +   D  I    IGYADG+   L G       
Sbjct: 247 EPALSLESELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGFHV---- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G    I+G+I MD  M  +  +     G  + + G     +I L DVA 
Sbjct: 303 --------LVDGQYCEIVGRICMDQFMIRLPKAYP--AGTKVVLVGQSGDQEITLLDVAK 352

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T +Y++   +  R  +
Sbjct: 353 YSKTIHYEIACNLTPRLKR 371


>gi|256959977|ref|ZP_05564148.1| alanine racemase [Enterococcus faecalis Merz96]
 gi|293383728|ref|ZP_06629635.1| alanine racemase [Enterococcus faecalis R712]
 gi|293388796|ref|ZP_06633289.1| alanine racemase [Enterococcus faecalis S613]
 gi|312907057|ref|ZP_07766053.1| alanine racemase [Enterococcus faecalis DAPTO 512]
 gi|312978687|ref|ZP_07790414.1| alanine racemase [Enterococcus faecalis DAPTO 516]
 gi|256950473|gb|EEU67105.1| alanine racemase [Enterococcus faecalis Merz96]
 gi|291078804|gb|EFE16168.1| alanine racemase [Enterococcus faecalis R712]
 gi|291081953|gb|EFE18916.1| alanine racemase [Enterococcus faecalis S613]
 gi|310627042|gb|EFQ10325.1| alanine racemase [Enterococcus faecalis DAPTO 512]
 gi|311288394|gb|EFQ66950.1| alanine racemase [Enterococcus faecalis DAPTO 516]
          Length = 371

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 164/378 (43%), Gaps = 33/378 (8%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N  +    L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQNECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPKSNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            L+VDTG  R+G       ++A+ F    F+K+      I +H + AD+  +     Q  
Sbjct: 130 HLKVDTGMGRIGFLNPEETKQAVRFVQ--FHKEF-LWEGIFTHFSTADEIDTSYFEKQAG 186

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTV 235
           RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++  
Sbjct: 187 RFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKPA 246

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +V 
Sbjct: 247 LRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------TVL 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALASG 351
           + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA    
Sbjct: 301 VNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKLE 352

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++      R  + Y
Sbjct: 353 TIHYEVACTFSQRIPREY 370


>gi|323486703|ref|ZP_08092024.1| alanine racemase [Clostridium symbiosum WAL-14163]
 gi|323400084|gb|EGA92461.1| alanine racemase [Clostridium symbiosum WAL-14163]
          Length = 375

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 153/376 (40%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVE 66
           + IDL  +K+N   + N +  +     V+K NA G G  + +  L    G++   V  V 
Sbjct: 9   ITIDLAKIKSNMEKIRNHVGPDVEIMPVLKANACGHGLIRTSDWLVKECGIKRLAVAQVR 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSCGVSHPYA 125
           E  +LR    QA I VL G+           NLI PV  +       +     G +    
Sbjct: 69  EAEQLRRAGSQAEIMVLGGVPVNNLPYAVQENLILPVFRTQDAALLSALAQENGRTARVH 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++DTG  R+G+   E L+   +      G ++  + +H   A+        +Q+ RF  
Sbjct: 129 IKIDTGLGRIGVEKGEQLEELLDGILPLKGLEIEGVFTHFGEAEVTDPEFTKIQISRFEE 188

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            +   +  GI+       ++   +     H+ + R G+   G    +++ + +      E
Sbjct: 189 ALGQIRARGIQPRYIHATNTPSTVRFKKAHYNMIRTGLLWLGYDPCLDEDNRLGLETVLE 248

Query: 240 ARIILIRK--ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  L  K   L+G  + Y       RD+++ +A  GY DGY   L  L  +       G
Sbjct: 249 WKTFLTNKKYVLSGRSMGYWRSFTAKRDTVVGIACFGYGDGY---LEDLGKK-------G 298

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASGTTNY 355
           G   I G   PI+  + MD T  DITD    E+GD + + G D   K+D   +   T N 
Sbjct: 299 GYVLIHGKRAPII-SVCMDQTFLDITDIPEAEIGDTVTLIGHDGGEKIDAFDMEKLTENS 357

Query: 356 DL--LVRIGTRYAKFY 369
            +  L  I  R  + Y
Sbjct: 358 YVVYLCNISERPVRIY 373


>gi|313885619|ref|ZP_07819369.1| alanine racemase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619349|gb|EFR30788.1| alanine racemase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 395

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 160/399 (40%), Gaps = 59/399 (14%)

Query: 11  IDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++L+A++ N  W       G +   AVVK NAYGLG E++A     AG +   V +V+EG
Sbjct: 14  VNLSAIEANIKWQQAKLEPGQS-LIAVVKANAYGLGAEQVARTALKAGAEGLAVATVDEG 72

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-----------LM 116
           + LR     Q  I VL    P     I   NL   +S    L F+ +            +
Sbjct: 73  ISLRKAGIIQVPILVLGLTDPQGIAEILHYNLTVTVSD---LDFFDQAYQQLLTTDDLYL 129

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHV 174
              +  P+ L +DTG  R+GL  + E  DF              + +H +     P  +V
Sbjct: 130 LDNLKLPFHLALDTGMTRIGLRTETEVSDFVTKIQAYDWVDFQGVFTHFSTIGGGPQDYV 189

Query: 175 NSVQLERF---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKI--- 226
              Q +R+     LI     I     S+ G+           R G+++YG    D+I   
Sbjct: 190 E-YQWQRWLDLTALIPESVKIRHYANSAMGLWQDRQPASTWVRYGVAMYGLDPMDRIPSH 248

Query: 227 ------------NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
                       N+  P+Q  +   + I+ +++   G  +SYG   + +    IA   IG
Sbjct: 249 FKEQVDTSQLGLNEEDPLQPALELISEIVYVKEIPQGTKISYGATYQSSEKEWIATIPIG 308

Query: 275 YADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
           YADG+      L S     V       ++G+  P++G+I MD  M  +        G  +
Sbjct: 309 YADGW------LRSYQVIPV------LVEGHACPVVGRINMDQLMIRLPHYYP--KGTPV 354

Query: 335 QIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            + GPD      +  +A  + T  Y+++  +  R  + Y
Sbjct: 355 TLIGPDHGAYNHISWIAQQTSTIGYEIMTNLSDRIPRIY 393


>gi|168491420|ref|ZP_02715563.1| alanine racemase [Streptococcus pneumoniae CDC0288-04]
 gi|183574262|gb|EDT94790.1| alanine racemase [Streptococcus pneumoniae CDC0288-04]
          Length = 367

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 72  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF+
Sbjct: 126 VHLKIDSGMGRIGFREASEVEQAQDLLQQHDVRVEGIFTHFATADEESDDYFNAQLERFK 185

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 186 TILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 243 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 297 VDGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRV 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 349 TINYEVVCLLSDRIPREY 366


>gi|328472253|gb|EGF43123.1| alanine racemase [Vibrio parahaemolyticus 10329]
          Length = 404

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 147/353 (41%), Gaps = 50/353 (14%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID  A  NN   +   L GN +  A++K +AYG G   + P++    V    +TS EE
Sbjct: 43  LEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSNEE 102

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R +  + +I  +      + +      +  +I +  Q     +++    ++   + 
Sbjct: 103 ARVVREHGFEGKIMRVRAASRNEIENGVQYEIEELIGTKMQA---DQIIEIAYNYNTVIP 159

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  LD T        GQ    +  +  A DP+       +H  +  L+
Sbjct: 160 VHLALNTSGMG-RNGLDLTTYE-----GQ----VEGVEIASDPNLKIVGMMTHFPNEGLD 209

Query: 181 RFRTLISHYKGIEASLASSSGI---------------LLGPNYHFQLTRPGISLYGGTDK 225
             R  +  +K     L  S+G+               L  P  H  + RPG  LYG    
Sbjct: 210 EIRRKVDRFKVETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYG---D 266

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
              + P + +V+ + R+  +    AG  + YG  K L RDS++A   IGY+DG+  +LS 
Sbjct: 267 YPATLPYERIVSFKTRVASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN 326

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                           I G    ++GK +M+ TM D+TD + ++  D + +FG
Sbjct: 327 -----------KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFG 368


>gi|319761022|ref|YP_004124959.1| alanine racemase [Alicycliphilus denitrificans BC]
 gi|317115583|gb|ADU98071.1| alanine racemase [Alicycliphilus denitrificans BC]
          Length = 364

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 153/353 (43%), Gaps = 48/353 (13%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AVVK NAYG G E++   L +A      +  + E  ++R    +  + +L G+  P   +
Sbjct: 32  AVVKANAYGHGIERVFEGLRSA--DGIALLDMAEAERVRRLGWRGPVLLLEGVFEPRDLE 89

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
           +    +L   +    Q+ + +   +    H   L++++G NRLG +        + S   
Sbjct: 90  LCSRLSLWHAVHCDEQIDWLAAHKT-QAPHRVFLKMNSGMNRLGFAPGR-----YRSAWA 143

Query: 153 KLGQLSLI-----ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL-GP 206
           +L  L  +     ++H + AD P    + VQ   F        G E  +A+S+ IL  G 
Sbjct: 144 RLNALPQVDEISFMTHFSDADGPRGIAHQVQA--FHRATQDLPG-ERCIANSAAILRHGG 200

Query: 207 NYHFQL--TRPGISLYGGTDKINKSHPMQTVV--------TAEARIILIRKALAGELVSY 256
               +L   R GI+LYG        HP +T V        T  +RII +++  AG+ V Y
Sbjct: 201 EAQVRLDWVRAGIALYGSA----PDHPERTAVDWGLEPAMTLASRIIGVQQLQAGDTVGY 256

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           G +        I V A GYADGYP         H  +   G    + G     +G+++MD
Sbjct: 257 GSRFTAEGPLAIGVVACGYADGYP--------RHCDT---GTPVLVNGVRTRTIGRVSMD 305

Query: 317 MTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVRIGTR 364
           M   D+T      +G  + ++G       + +D+VA A GT  Y+L+  +  R
Sbjct: 306 MIAVDLTPVPGAGMGAEVTLWGRAANGVVLPIDEVAEAGGTVGYELMCALAPR 358


>gi|288919620|ref|ZP_06413949.1| alanine racemase [Frankia sp. EUN1f]
 gi|288349018|gb|EFC83266.1| alanine racemase [Frankia sp. EUN1f]
          Length = 393

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 163/391 (41%), Gaps = 53/391 (13%)

Query: 9   LKIDLTALKNNWHSMNAL------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           L +D+ A+  N  +++A+       G     AVVK + YG G   +A A    G   F V
Sbjct: 16  LTLDVAAVTANVRTISAIRRQAGACGAGEVMAVVKADGYGHGLADVARAALAGGATRFGV 75

Query: 63  TSVEEGVKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           TSV E   LR      P     VL  ++P        T    V  +VP    ++ L +  
Sbjct: 76  TSVAEAYTLRDLGFTEP-----VLSWLNPVDADFTQATRAG-VELAVPS---HAHLRAVA 126

Query: 120 VSHPYA---LQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLI--ISHLACADDPSSH 173
              P A   LQ+DTG  R G   ++     H +   ++ G + ++  + HLACA +P   
Sbjct: 127 RQTPGAGVHLQLDTGMARDGAPPEQWESLCHTARCAERAGFVHVVGVMGHLACAAEPGHP 186

Query: 174 VNSVQLERFR-----TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
            N    E F       L +  +  +  LA+++  L  P  H  L+R G  L G    I++
Sbjct: 187 ANRRGRECFDWGVRVALGAGLRPRDRHLAATAATLSDPRTHHSLSRIGAGLVG----IDE 242

Query: 229 SHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           S    ++  +   A ++ +R   AG  V YG      R + + +  +GYADG P   +  
Sbjct: 243 SGSVRLRPALRLTAPLVTVRAVPAGTAVGYGHTWTSPRATRLGLVPVGYADGLPRCAAAR 302

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI---TDSLSIEVGDYIQIFGP---- 339
                          + G    ++G+++MDMT+ D+     +     GD + +FGP    
Sbjct: 303 AQV-----------QVAGVRRRVVGRLSMDMTVVDLGPDPAACPARAGDVVTLFGPGDGG 351

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +    D A  + T  ++++  +G R  +  T
Sbjct: 352 EPTAADWARWAATLEHEIVTGLGPRLRRVVT 382


>gi|330822880|ref|YP_004386183.1| alanine racemase [Alicycliphilus denitrificans K601]
 gi|329308252|gb|AEB82667.1| Alanine racemase [Alicycliphilus denitrificans K601]
          Length = 364

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 153/353 (43%), Gaps = 48/353 (13%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEK 92
           AVVK NAYG G E++   L +A      +  + E  ++R    +  + +L G+  P   +
Sbjct: 32  AVVKANAYGHGIERVFEGLRSA--DGIALLDMAEAERVRRLGWRGPVLLLEGVFEPRDLE 89

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
           +    +L   +    Q+ + +   +    H   L++++G NRLG +        + S   
Sbjct: 90  LCSRLSLWHAVHCDEQIDWLAAHKT-QAPHRVFLKMNSGMNRLGFAPGR-----YRSAWA 143

Query: 153 KLGQLSLI-----ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL-GP 206
           +L  L  +     ++H + AD P    + VQ   F        G E  +A+S+ IL  G 
Sbjct: 144 RLNALPQVDEISFMTHFSDADGPRGIAHQVQA--FHRATQDLPG-ERCIANSAAILRHGG 200

Query: 207 NYHFQL--TRPGISLYGGTDKINKSHPMQTVV--------TAEARIILIRKALAGELVSY 256
               +L   R GI+LYG        HP +T V        T  +RII +++  AG+ V Y
Sbjct: 201 EAQVRLDWVRAGIALYGSA----PDHPERTAVDWGLEPAMTLASRIIGVQQLQAGDTVGY 256

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           G +        I V A GYADGYP         H  +   G    + G     +G+++MD
Sbjct: 257 GSRFTAEGPLAIGVVACGYADGYP--------RHCDT---GTPVLVNGVRTRTIGRVSMD 305

Query: 317 MTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVRIGTR 364
           M   D+T      +G  + ++G       + +D+VA A GT  Y+L+  +  R
Sbjct: 306 MIAVDLTPVPGAGMGAEVTLWGRASNGVVLPIDEVAEAGGTVGYELMCALAPR 358


>gi|115373926|ref|ZP_01461217.1| alanine racemase [Stigmatella aurantiaca DW4/3-1]
 gi|115369054|gb|EAU67998.1| alanine racemase [Stigmatella aurantiaca DW4/3-1]
          Length = 403

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 173/389 (44%), Gaps = 46/389 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA----AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L++   +L++N     AL      A    AV+K NAYG G E++ P L +  V   +  +
Sbjct: 19  LELSAASLRHNVEVFRALEATGAPARALGAVLKGNAYGHGLEQVLP-LVHPLVDILYFIT 77

Query: 65  VEEGVKLRLYTPQAR-----IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            ++ + +R +  + +     + V+  I P +   +    +  V++         +L +  
Sbjct: 78  PQDALAVRAFERERKLAPRQVLVIGAISPEEAVALAREGVDAVVADSAWAEAGPRLRAAR 137

Query: 120 VSHPYALQV--DTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           + HP  + V  DTG  R G +L++   D    +  + + +++ ++SH A  +D +    +
Sbjct: 138 LQHPLRVHVHIDTGLGREGFTLEQLPRDTGFLTEYRDVFEVTGVLSHFANTEDVTEQAYA 197

Query: 177 V-QLERFRT----LISHY--KG-IEASLASSSGILLGPNYHFQLTRPGISLYG------- 221
           + QLE F      L+     KG ++  +A+S+  L  P   ++  R GISLYG       
Sbjct: 198 LAQLEAFEAGTARLVEQLSLKGPLQRHIAASAASLSLPRARYEALRVGISLYGFWPSPET 257

Query: 222 --GTDKINKSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
              T  +    P ++ V++   R  +++    G  V YG   +    + IAV  +GY DG
Sbjct: 258 RLSTRLVLGGLPTLKPVLSWRCRSQVVKWLPEGSYVGYGCTYRCPEPTRIAVLPVGYFDG 317

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           YP   SG                + G   P+LG++ M+  + D+T + + E      + G
Sbjct: 318 YPRLASG-----------KAHVLVNGRRCPVLGRVMMNHLIVDVTRATADERPLTATLLG 366

Query: 339 PD----IKLDDVALASGTTNYDLLVRIGT 363
            D    +  + +A  + T +Y+++ R+G+
Sbjct: 367 HDGGETLPAETLAGWAQTIHYEVVTRLGS 395


>gi|104773514|ref|YP_618494.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|123251998|sp|Q1GBP6|ALR_LACDA RecName: Full=Alanine racemase
 gi|103422595|emb|CAI97198.1| Alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 376

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 143/328 (43%), Gaps = 34/328 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+L A+K N     A L    +   VVK NAYG G  ++AP +  AG   F V  ++E
Sbjct: 11  LHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGAARLAPVMEEAGADGFCVAMLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSK-LMSCGVSHPYA 125
           G++LR       I VL G+ P +E  +   N I + +SS+  L    K L   G+     
Sbjct: 71  GLELRRAQIVKPILVL-GLQPAEEAALAAANDISLPVSSLDWLKKAEKVLRKEGLQLKIH 129

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLII----SHLACADDPSSHVNSVQLE 180
           L +D+G  R+G S  E  DF   + N+ L G  +  +    +H A AD   +     Q++
Sbjct: 130 LAIDSGMGRIGFSEDE--DF--KAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHP 231
           RF+ + S    K     + +++ IL   +    + R GI LYG       G+  +  +  
Sbjct: 186 RFKHMESLLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTM 319
                  K  +     PI+G++ MD  M
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFM 321


>gi|301794676|emb|CBW37127.1| alanine racemase [Streptococcus pneumoniae INV104]
          Length = 367

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 168/382 (43%), Gaps = 51/382 (13%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 72  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF+
Sbjct: 126 VHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERFK 185

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKS-------HP 231
           T+++  K + E   AS+S   L   +H    F   R G ++YG    +N S       + 
Sbjct: 186 TILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYG----LNPSGAVLALPYD 238

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +   +T E+ ++ I+   AG  + YG   +   + +IA   IGYADG+   +        
Sbjct: 239 LIPALTLESALVHIKTVPAGACMGYGATYQTDSEQVIATVPIGYADGWTRDMQNF----- 293

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
            SV + G+        PI+G+++MD     +     +  G  + + G     +I    VA
Sbjct: 294 -SVLVDGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVA 344

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY+++  +  R  + Y
Sbjct: 345 TYRVTINYEVVCLLSDRIPREY 366


>gi|283783501|ref|YP_003374255.1| alanine racemase [Gardnerella vaginalis 409-05]
 gi|283441514|gb|ADB13980.1| alanine racemase [Gardnerella vaginalis 409-05]
          Length = 459

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 45/282 (15%)

Query: 126 LQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----HV 174
           ++VDTGF R G +       L++   ++     + +GQ S    HLA AD P        
Sbjct: 164 VKVDTGFGRNGFTPEGFCAALEKLQQYSSEGVIEVIGQWS----HLAVADSPDVPEFVDA 219

Query: 175 NSVQLERFRTLISHYKGIEAS-------LASSSGILLGPNYHFQLTRPGISLYGGTDKI- 226
              Q+++F       K  EAS       LA+++  L  P   F+L RPGI LYG      
Sbjct: 220 TDRQIQQFHEFTKRMK--EASVAPKIRHLANTAATLNRPEIRFELVRPGIGLYGYEPDPA 277

Query: 227 ---NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
              ++++ +Q  +T +A++  ++    G  +SYG       ++  A+  +GYADG   + 
Sbjct: 278 MGNSQTYGLQPAMTLQAQLGTVKTVEEGHGISYGRTYLTPNNTSTAIVPLGYADGILRSA 337

Query: 284 SGLDSEHSPSVFLGGKGFIK------GYMVPILGKITMDMTMFDI---TDSLSIEVGDYI 334
           SG D + +  V   G G ++        +V + G++ MD  + D+      L +  G+ +
Sbjct: 338 SGFDMQGARHVNKPG-GPVRVETKNGARIVNVSGRVCMDQFIVDLKGDASELGVLEGNTV 396

Query: 335 QIFGPDIKL-------DDVALASGTTNYDLLVRIGTRYAKFY 369
            +FGP   L       DD A A+GT +Y+++  IG R  + Y
Sbjct: 397 TLFGPGRGLEFAEPTADDWAEAAGTISYEIMTGIGPRVPRLY 438


>gi|257083766|ref|ZP_05578127.1| alanine racemase [Enterococcus faecalis Fly1]
 gi|256991796|gb|EEU79098.1| alanine racemase [Enterococcus faecalis Fly1]
          Length = 371

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVETAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVQFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A]
 gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A]
          Length = 849

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 164/374 (43%), Gaps = 30/374 (8%)

Query: 9   LKIDLTALKNN--WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+ +N  W+  + +    +   ++K +AYG G  +IA  L +  V    V   +
Sbjct: 490 LEVNLNAIVDNLNWYR-SLMKPQTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVAD 548

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVS-H 122
           EGV LR       + ++   +P     K +FD +L P + S   L    K     G++  
Sbjct: 549 EGVTLRKNGITNNVMIM---NPEMSSFKTLFDFDLEPEVYSFRLLEALIKAAEKEGITGF 605

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISH-LACADDPSSHVNSVQLE 180
           P  +++DTG +RLG    + +D   +   K+   +   + SH +    D     +S Q  
Sbjct: 606 PVHIKIDTGMHRLGFDPVKDIDELIHRLQKQSAIIPRSVFSHFVGSDSDSFDDFSSQQFA 665

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            F+      +G     I   + +S+GI   P     + R G+ LYG   + NK     T+
Sbjct: 666 LFKQGADKLQGAFPHKILFHMDNSAGIEHFPYRQMDMCRLGLGLYGINPRSNKC--FNTI 723

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
              +  I+ IR    G+ V Y  +  ++ DS+IA   IGYADG    L            
Sbjct: 724 SELKTTILQIRSVPKGDTVGYSRKGVISHDSMIAAIPIGYADGLNRHLGNRR-------- 775

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
             G   + G     +G I MD+ M D+T  +  + GD ++IFG ++ +  ++    T  Y
Sbjct: 776 --GYCLVNGKKAEYVGNICMDVAMIDVT-GIDCKEGDQVEIFGKNLPVTVLSDILDTIPY 832

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +  R  + Y
Sbjct: 833 EVLTNVSNRVKRVY 846


>gi|153837983|ref|ZP_01990650.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
 gi|149748591|gb|EDM59450.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
          Length = 404

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 147/353 (41%), Gaps = 50/353 (14%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID  A  NN   +   L GN +  A++K +AYG G   + P++    V    +TS EE
Sbjct: 43  LEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSNEE 102

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R +  + +I  +      + +      +  +I +  Q     +++    ++   + 
Sbjct: 103 ARVVREHGFKGKIMRVRAASRNEIENGVQYEIEELIGTKMQA---DQIIEIAYNYNTVIP 159

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  LD T        GQ    +  +  A DP+       +H  +  L+
Sbjct: 160 VHLALNTSGMG-RNGLDLTTYE-----GQ----VEGVEIASDPNLKIVGMMTHFPNEGLD 209

Query: 181 RFRTLISHYKGIEASLASSSGI---------------LLGPNYHFQLTRPGISLYGGTDK 225
             R  +  +K     L  S+G+               L  P  H  + RPG  LYG    
Sbjct: 210 EIRRKVDRFKVETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYG---D 266

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
              + P + +V+ + R+  +    AG  + YG  K L RDS++A   IGY+DG+  +LS 
Sbjct: 267 YPATLPYERIVSFKTRVASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN 326

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                           I G    ++GK +M+ TM D+TD + ++  D + +FG
Sbjct: 327 -----------KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFG 368


>gi|148994015|ref|ZP_01823371.1| alanine racemase [Streptococcus pneumoniae SP9-BS68]
 gi|168484889|ref|ZP_02709834.1| alanine racemase [Streptococcus pneumoniae CDC1873-00]
 gi|168488585|ref|ZP_02712784.1| alanine racemase [Streptococcus pneumoniae SP195]
 gi|147927482|gb|EDK78510.1| alanine racemase [Streptococcus pneumoniae SP9-BS68]
 gi|172041957|gb|EDT50003.1| alanine racemase [Streptococcus pneumoniae CDC1873-00]
 gi|183572801|gb|EDT93329.1| alanine racemase [Streptococcus pneumoniae SP195]
 gi|332072526|gb|EGI83009.1| alanine racemase [Streptococcus pneumoniae GA17570]
          Length = 367

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 72  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF+
Sbjct: 126 VHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERFK 185

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 186 TILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 243 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 297 VDGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRV 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 349 TINYEVVCLLSDRIPREY 366


>gi|50083405|ref|YP_044915.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter sp. ADP1]
 gi|49529381|emb|CAG67093.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter sp. ADP1]
          Length = 365

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 161/379 (42%), Gaps = 54/379 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L AL +N   + A +  ++  AVVK NAYG G E++  A   A    F +  +EE  +
Sbjct: 9   IHLEALAHNLKIVRASAPESQVFAVVKANAYGHGIERVYQAFKQA--DGFALLDIEEAKR 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---YSKLMSCGVSHPYALQ 127
           LR       I +L GI   Q+  +FD           QL+F   +   +     HP   Q
Sbjct: 67  LRALGWTGPILLLEGIFSPQD--LFDCVQY-------QLSFTVHHDVQIDWIEGHPEDAQ 117

Query: 128 VD------TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNS 176
            D      +G NRLG    + + + H    ++L  LS +     + H + AD      + 
Sbjct: 118 FDIFLKMNSGMNRLGF---KPVQYRHAW--QRLNALSQVRHLTHMMHFSDADGERFGESG 172

Query: 177 V--QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSH 230
           +  Q + F   I    G   S+++S+ IL  P  H  + R GI LYG +           
Sbjct: 173 ITYQHDLFEDTIRDLPG-PKSVSNSAAILRHP-LHSDVVRGGIMLYGSSPDYPTHGLHDW 230

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++  + II I+     E V YG      +   I + A GYADGY           
Sbjct: 231 SLKPTMSLRSEIIAIQMLEPNESVGYGSSFVADQPLRIGIVACGYADGY--------QRI 282

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDD 345
           SP+   G    + G     +G+++MDM   D++      +G  + ++G       + +DD
Sbjct: 283 SPT---GTPVLVDGIETRTIGRVSMDMLAVDLSAVPKARIGSEVVLWGYSSTGVILPIDD 339

Query: 346 VALASGTTNYDLLVRIGTR 364
           VA ASGT  Y+L+  +  R
Sbjct: 340 VAAASGTVGYELMCAVTAR 358


>gi|300742014|ref|ZP_07072035.1| alanine racemase [Rothia dentocariosa M567]
 gi|300381199|gb|EFJ77761.1| alanine racemase [Rothia dentocariosa M567]
          Length = 437

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 167/389 (42%), Gaps = 36/389 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   +  + G  +  AVVK +AYG G   +A ++  AG     V  V E ++
Sbjct: 24  IDLNALEHNTRVLKDMIGERKLIAVVKADAYGHGAYPVARSVLEAGADILGVVHVTEALE 83

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA---L 126
           LR     A I     +H  Q    FD  L   +I         +   +   +   A   L
Sbjct: 84  LRSEGITAPIIAW--LHTPQTD--FDEALEADIILGASGWDLEAIAEAANRTKKRARVHL 139

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +VDTG  R G + ++       +   +   L ++  I SHLA AD+P     + Q+ R  
Sbjct: 140 KVDTGLGRNGSTFEDWPALVARALELEAAGLVRIEGIFSHLAVADEPERPETARQIARLN 199

Query: 184 TL--ISHYKGIEASL---ASSSGILLG--PNYHFQ------LTRPGISLYGGTDKI---N 227
               ++   G+   L   A+S G + G  P Y+          R GI+LYG +      +
Sbjct: 200 EFATVARSAGLTPELVHLANSPGTITGASPLYNTNEAVLADAVRCGIALYGLSPLAGVSS 259

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           K   ++ V+T    +  +++  AG+ VSYG +    + + + +  +GYADG P    G  
Sbjct: 260 KDLNLRPVMTLGTHVCNVKEVPAGQGVSYGLRYSTDKPTTLVLIPLGYADGVPRIAEGAP 319

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD-----ITDSLSIEVGDYIQIFGP--D 340
               P          + Y V  +G+I MD  + D     + D     +G    +FG   +
Sbjct: 320 VRIYPRADAANPVEPRTYRV--VGRIAMDQLVVDLEEPGLADPARGILGGSAVLFGSGDN 377

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             +++ A A+ T NY+++ RI  R  + Y
Sbjct: 378 PPVEEWAAAAQTINYEIVTRISPRVIRIY 406


>gi|291456246|ref|ZP_06595636.1| alanine racemase [Bifidobacterium breve DSM 20213]
 gi|291381523|gb|EFE89041.1| alanine racemase [Bifidobacterium breve DSM 20213]
          Length = 452

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 174/404 (43%), Gaps = 50/404 (12%)

Query: 11  IDLTALKNNWHSMNALSG--NARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++L  +++N   + ++ G  N+ TA   VVK +AYG G    A A    G          
Sbjct: 33  VNLKTMRDNMAHLVSVVGGPNSGTAVMGVVKADAYGHGLLPSALAALAGGATWLGTAQSH 92

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQL-TFYSKLMSCGV 120
           E + LR L     R  +L  ++ G E + FD     ++   + S+P +    +     G 
Sbjct: 93  EALLLRKLGIGPDRCHILTWVYNGTE-VPFDELIAADIDVSVGSLPGIDAVAAAARKLGK 151

Query: 121 SHPYALQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPS-- 171
                ++VD+GF R G +       L E +          +GQ S    HLA AD P   
Sbjct: 152 PARVHVKVDSGFGRNGFTPAGFAAALAELVPLAKEGVLHIVGQWS----HLAVADSPDVP 207

Query: 172 SHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTD 224
             V S   Q+E F+   +  +  GI      LA+++  L  P  HF+LTRPGI LYG   
Sbjct: 208 EFVASTDRQIETFKDFTARMEKAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLYGYEP 267

Query: 225 KINKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
                 P    +T     +A++  ++   AG  +SYG       ++  A+  +GYADG  
Sbjct: 268 DPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYADGIH 327

Query: 281 LTLSGLDSEHSPSVF-LGGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSIEVGD 332
            + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +  GD
Sbjct: 328 RSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGVHEGD 387

Query: 333 YIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 388 TVELFGPGRGEQFVEPTADDWARAADTISYEVFTCLRNRIPRLY 431


>gi|149006639|ref|ZP_01830338.1| alanine racemase [Streptococcus pneumoniae SP18-BS74]
 gi|225861522|ref|YP_002743031.1| alanine racemase [Streptococcus pneumoniae Taiwan19F-14]
 gi|307127910|ref|YP_003879941.1| alanine racemase [Streptococcus pneumoniae 670-6B]
 gi|254802393|sp|C1CSV9|ALR_STRZT RecName: Full=Alanine racemase
 gi|147761937|gb|EDK68900.1| alanine racemase [Streptococcus pneumoniae SP18-BS74]
 gi|225726792|gb|ACO22643.1| alanine racemase [Streptococcus pneumoniae Taiwan19F-14]
 gi|306484972|gb|ADM91841.1| alanine racemase [Streptococcus pneumoniae 670-6B]
 gi|327389883|gb|EGE88228.1| alanine racemase [Streptococcus pneumoniae GA04375]
 gi|332072868|gb|EGI83349.1| alanine racemase [Streptococcus pneumoniae GA17545]
 gi|332200256|gb|EGJ14329.1| alanine racemase [Streptococcus pneumoniae GA47368]
          Length = 367

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 169/381 (44%), Gaps = 43/381 (11%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++
Sbjct: 10  KVLIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNID 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           E ++LR       I +L G+   +   +   +D  L     +V  L +   L+   V   
Sbjct: 69  EAIELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLT 122

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLE
Sbjct: 123 GLTVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLE 182

Query: 181 RFRTLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPM 232
           RF+T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +
Sbjct: 183 RFKTILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         
Sbjct: 240 IPALTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
           SV + G+        PI+G+++MD     +     +  G  + + G     +I    VA 
Sbjct: 294 SVLVDGQA------CPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVAT 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY+++  +  R  + Y
Sbjct: 346 YRVTINYEVVCLLSDRIPREY 366


>gi|332687104|ref|YP_004456878.1| alanine racemase [Melissococcus plutonius ATCC 35311]
 gi|332371113|dbj|BAK22069.1| alanine racemase [Melissococcus plutonius ATCC 35311]
          Length = 372

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 161/376 (42%), Gaps = 28/376 (7%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ ID  A+ NN H+    L+      AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  KIHIDTQAIYNNVHNEKKRLAAETELFAVVKANGYGHGAVQTAYAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           E ++LR  +    I +L  + P   + +   +L   ++    L   + ++       P  
Sbjct: 70  EALELREASLPDPILILGIVMPDYIEDLLAYDLSVTVTDQSWLERAAIILEKLKPRKPLR 129

Query: 126 L--QVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L  +VDTG  R+G   + A+    N+  N    +   I +H + AD+  +     Q E+F
Sbjct: 130 LHIKVDTGMGRIGFLTETAVKKAINTITNNPYMEWEGIFTHFSTADERDTDYFDHQNEKF 189

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVT 237
           + +I     +     +++S+  L     ++ + R G+++YG      K+   +P+   ++
Sbjct: 190 QKIIQILPFLPQYVHVSNSATALWHQENNYNMVRFGVAMYGLNPSGGKLATPYPLLPALS 249

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ ++K  AGE + YG     ++D  I    +GYADG+   + G            
Sbjct: 250 LTSELVQVKKLPAGEGIGYGETYITSQDEWIGTFPMGYADGWLRHMQGFYV--------- 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G    I+G+++MD  M  +     I VG  + + G D    I L  +A    T 
Sbjct: 301 ---LVNGEKSEIIGRVSMDQCMIHLKK--EIPVGTKVTLVGKDQEEEITLQMIADHLQTI 355

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++      R  + Y
Sbjct: 356 HYEVACTFSQRVPREY 371


>gi|322805978|emb|CBZ03545.1| alanine racemase [Clostridium botulinum H04402 065]
          Length = 256

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 121/253 (47%), Gaps = 29/253 (11%)

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
           GF+    SL+E +    +  N K+  LS   SH + +D+     +  Q + F+       
Sbjct: 5   GFDPTVESLEE-IKRIQDLSNIKIEGLS---SHFSSSDENDKSYSEYQFKIFQNFRKKLI 60

Query: 191 GIEAS-----LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVVTAEARI 242
           GI        +++S+ I+  P+ +    R GI LYG   + ++NK +  ++ V+T +A I
Sbjct: 61  GINMKIPIYHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVNKENLHIKQVMTLKANI 120

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + I+   +G+ V Y  + K  R S IA+  +GY DGY   LS             GK  I
Sbjct: 121 VHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR-----------GKVII 169

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD--DVALASGTTNYD 356
            G   PI+G I MD  M D+TD   ++VGD + I G D    ++ D  D+A   G T+ +
Sbjct: 170 NGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAEDIASKVGMTSGE 229

Query: 357 LLVRIGTRYAKFY 369
           ++  I  R  + Y
Sbjct: 230 IMSIISKRVPRVY 242


>gi|313609784|gb|EFR85237.1| alanine racemase [Listeria monocytogenes FSL F2-208]
          Length = 314

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 142/331 (42%), Gaps = 36/331 (10%)

Query: 54  NAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQL 109
            AG + F V  ++E + LR    Q    ++ G    ++  +   N I +       + +L
Sbjct: 3   EAGAKGFCVAILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEEL 62

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
           T  + L          L+VD+G  RLG+ +++EA        +    QL  I +H A AD
Sbjct: 63  TLEAPLR-------IHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATAD 115

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--D 224
              +     QL +F+T+++  K     +  A+S+  LL P   F   R GIS+YG T   
Sbjct: 116 QLETSYFEQQLTKFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPST 175

Query: 225 KINKSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
           +I  S P  ++  ++    ++ +++   G+ VSYG     T    +A   IGYADG    
Sbjct: 176 EIKTSLPFELKPALSLYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRH 235

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
            SG                + G + PI+G++ MD T+  +      + G  + I G D  
Sbjct: 236 YSGFHV------------LVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNG 281

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             I  DD A    T NY++   +  R  + Y
Sbjct: 282 NTITADDAAQYLDTINYEVTCLLNERIPRKY 312


>gi|50254060|gb|AAT72154.1| alanine racemase [Borrelia hermsii]
          Length = 326

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 139/333 (41%), Gaps = 27/333 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I L  L +N  S      +    A +K +AYG G  +    L   GV  F +  +++ +K
Sbjct: 9   ITLQNLNHNLTSNKNPYSSRELVATLKSDAYGHGLIQTFKFLKEKGVNYFGLFWIDDALK 68

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---LQ 127
           L+       I +         K +   N+ P ++    L+   +   C   +      L+
Sbjct: 69  LKKIDKNVNILLYINTDKNAIKNLVKFNITPFVADSQYLSLIEQ--ECRKQNKKIKAHLK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VD G NR G+ +++AL+      N K  +   I +HL   ++  + +   Q+E+F   I+
Sbjct: 127 VDVGMNRYGIKIEDALNLAIQIQNSKSIEFEGICTHLPTTEN--TKITQTQIEKFVYFIN 184

Query: 188 HYK--GIEASLASSSGILLGPNYH----FQLTRPGISLYG---GTDKINKSHPMQTVVTA 238
             K   I      +S      NY     F + RPG+ LYG     +  N +  ++ V+  
Sbjct: 185 KLKSKNINPKFIHASNSEHIANYKISEKFNMVRPGLILYGYHPNPNISNNNLQLKPVLNL 244

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ++II ++    GE +SY G      D  I +  +GY DG P   S     +   +    
Sbjct: 245 YSKIIFLKNIKKGEQISYSGLFTAKEDMQIGLIPVGYFDGIPQNTSN----NFYCIIRDR 300

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331
           K FIK       GKI M++++ +I   L I +G
Sbjct: 301 KCFIK-------GKICMNISIIEIPKDLKINIG 326


>gi|310817895|ref|YP_003950253.1| alanine racemase [Stigmatella aurantiaca DW4/3-1]
 gi|309390967|gb|ADO68426.1| Alanine racemase [Stigmatella aurantiaca DW4/3-1]
          Length = 414

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 173/389 (44%), Gaps = 46/389 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA----AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L++   +L++N     AL      A    AV+K NAYG G E++ P L +  V   +  +
Sbjct: 30  LELSAASLRHNVEVFRALEATGAPARALGAVLKGNAYGHGLEQVLP-LVHPLVDILYFIT 88

Query: 65  VEEGVKLRLYTPQAR-----IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            ++ + +R +  + +     + V+  I P +   +    +  V++         +L +  
Sbjct: 89  PQDALAVRAFERERKLAPRQVLVIGAISPEEAVALAREGVDAVVADSAWAEAGPRLRAAR 148

Query: 120 VSHPYALQV--DTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           + HP  + V  DTG  R G +L++   D    +  + + +++ ++SH A  +D +    +
Sbjct: 149 LQHPLRVHVHIDTGLGREGFTLEQLPRDTGFLTEYRDVFEVTGVLSHFANTEDVTEQAYA 208

Query: 177 V-QLERFRTLISHY------KG-IEASLASSSGILLGPNYHFQLTRPGISLYG------- 221
           + QLE F    +        KG ++  +A+S+  L  P   ++  R GISLYG       
Sbjct: 209 LAQLEAFEAGTARLVEQLSLKGPLQRHIAASAASLSLPRARYEALRVGISLYGFWPSPET 268

Query: 222 --GTDKINKSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
              T  +    P ++ V++   R  +++    G  V YG   +    + IAV  +GY DG
Sbjct: 269 RLSTRLVLGGLPTLKPVLSWRCRSQVVKWLPEGSYVGYGCTYRCPEPTRIAVLPVGYFDG 328

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           YP   SG    H           + G   P+LG++ M+  + D+T + + E      + G
Sbjct: 329 YPRLASG--KAHV---------LVNGRRCPVLGRVMMNHLIVDVTRATADERPLTATLLG 377

Query: 339 PD----IKLDDVALASGTTNYDLLVRIGT 363
            D    +  + +A  + T +Y+++ R+G+
Sbjct: 378 HDGGETLPAETLAGWAQTIHYEVVTRLGS 406


>gi|227520095|ref|ZP_03950144.1| alanine racemase [Enterococcus faecalis TX0104]
 gi|227072439|gb|EEI10402.1| alanine racemase [Enterococcus faecalis TX0104]
          Length = 371

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVETAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPQYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTESEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|228995614|ref|ZP_04155280.1| Alanine racemase [Bacillus mycoides Rock3-17]
 gi|228764186|gb|EEM13067.1| Alanine racemase [Bacillus mycoides Rock3-17]
          Length = 397

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 162/390 (41%), Gaps = 38/390 (9%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M  + F R   ++++L A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 9   MGKSSFYRDTWVEVNLDAIYNNVTHIKEIIPESVEIFAVVKANAYGHDYVLVARTALEAG 68

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I V+    P    +  + ++   +     +    ++ 
Sbjct: 69  ATRLAVAFLDEALVLRRAGITAPILVIGPSPPRDVNVAAENDVALTVFQKEWVEEAVEIW 128

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +  +    +L  I +H A AD+  +   
Sbjct: 129 DSPFPMKFHINFDSGMGRIGIRERKELKEFLRSLEDAPFLELEGIYTHFATADEVETSYF 188

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G+  +    A+S+  +      F   R GI++YG +  +    
Sbjct: 189 DKQYNTFLEQLSWLKAFGVNPTFIHTANSAATMRFDGITFNAVRIGIAMYGLSPSVEIRP 248

Query: 228 ----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
               K  P  ++ T  A I   ++ + G+ +SY    +   +  IA   IGYADG+   L
Sbjct: 249 YLPIKLEPALSLHTTVAHI---KRVIKGDRISYNVTYRTKTEEWIATVPIGYADGWLRRL 305

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
            G +              ++G  VPI+G+ITMD  M  +     + +G  + + G     
Sbjct: 306 QGFEV------------LVQGKRVPIVGRITMDQCMLHL--PCEVPLGTKVTLIGQQGDE 351

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I   +VA  S T NY+++  I  R  + +
Sbjct: 352 YISATEVAEYSNTINYEIIATISFRVPRVF 381


>gi|120608956|ref|YP_968634.1| alanine racemase [Acidovorax citrulli AAC00-1]
 gi|166919543|sp|A1TIS2|ALR_ACIAC RecName: Full=Alanine racemase
 gi|120587420|gb|ABM30860.1| alanine racemase [Acidovorax citrulli AAC00-1]
          Length = 369

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 165/388 (42%), Gaps = 59/388 (15%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++  I   AL+ N     A + +AR  AVVK NAYG G E+    L   G   F +  + 
Sbjct: 5   IQATIHTAALQQNLARARAAAPDARVWAVVKANAYGHGIERAFEGLR--GADGFALLDLG 62

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++R    +  I +L G+  P   ++    +L   +    Q+ + S   +    H   
Sbjct: 63  EAERVRQLGWRGPILLLEGVFEPRDLELCSRLSLWHAVHCDEQIDWLSAHKT-HAPHRVF 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--------ISHLACADDPSSHVNSV 177
           L++++G NRLG        F    +     +L+ +        ++H + AD P    +  
Sbjct: 122 LKMNSGMNRLG--------FPPARYRAAWARLNALPQVDEISFMTHFSDADGPRGIAH-- 171

Query: 178 QLERFRTLISHYKGIEASLASSSGIL--LGPNYHFQ--LTRPGISLYGGTDKINKSHPMQ 233
           Q++ F T      G E ++++S+  L   G +   +    R GI LYG        HP  
Sbjct: 172 QIDAFCTATQDLPG-ERTVSNSAATLRHAGGDARVRGDWVRAGIVLYGSA----ADHPEH 226

Query: 234 TV--------VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           T         +T  ARII  ++  AG+ V YG      R   I V A GYADGYP     
Sbjct: 227 TAAHWGLAPTMTLSARIIGTQQLQAGDTVGYGSSFTADRPMTIGVVACGYADGYP----- 281

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD----SLSIEVGDYIQIFGPD- 340
               H+P+   G    + G     +G+++MDM   D+T      +   VG    ++G   
Sbjct: 282 ---RHAPT---GTPVLVNGVRTRTVGRVSMDMITVDLTPLHEAGVEAGVGSEATLWGRAS 335

Query: 341 ----IKLDDVALASGTTNYDLLVRIGTR 364
               + +D+VA A+GT  Y+L+  +  R
Sbjct: 336 CGAVLCIDEVAQAAGTVGYELMCALAPR 363


>gi|317482523|ref|ZP_07941538.1| alanine racemase domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316915945|gb|EFV37352.1| alanine racemase domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 452

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 174/408 (42%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNW-HSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL  +++N  H ++ + G A   AV   VK +AYG G    A A    G          
Sbjct: 33  VDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGATWLGTAQSH 92

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQL-TFYSKLMSCGV 120
           E + LR L     R  +L  ++ G E + FD     ++   + S+P +    +     G 
Sbjct: 93  EALLLRKLGIGPDRCHILTWVYNGTE-VPFDELIAADIDVSVGSLPGIDAVAAAARKLGK 151

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
                ++VD+GF R G        FT   F+  L +L  +            SHLA AD 
Sbjct: 152 PARVHVKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203

Query: 170 PS--SHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P     V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKINKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    +T     +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVF-LGGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSI 328
           DG   + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|315029851|gb|EFT41783.1| alanine racemase [Enterococcus faecalis TX4000]
          Length = 371

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 163/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I   +IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVSIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|255017730|ref|ZP_05289856.1| hypothetical protein LmonF_08290 [Listeria monocytogenes FSL
           F2-515]
          Length = 255

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 25/255 (9%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 13  LKVDSGMGRLGIRTAEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 72

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVVTA 238
           +++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +  
Sbjct: 73  ILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPALAL 132

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              ++ +++   G+ VSYG     T    +A   IGYADG     SG             
Sbjct: 133 YTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHV---------- 182

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
              + G   PI+G++ MD T+  +      + G  + I G D    +  DD A    T N
Sbjct: 183 --LVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTVTADDAAQYLDTIN 238

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   +  R  + Y
Sbjct: 239 YEVTCLLNERIPRKY 253


>gi|169832829|ref|YP_001695074.1| alanine racemase [Streptococcus pneumoniae Hungary19A-6]
 gi|226711063|sp|B1I755|ALR_STRPI RecName: Full=Alanine racemase
 gi|168995331|gb|ACA35943.1| alanine racemase [Streptococcus pneumoniae Hungary19A-6]
          Length = 367

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 72  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF+
Sbjct: 126 VHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERFK 185

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 186 TILASMKCLPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 243 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 297 VDGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRV 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 349 TINYEVVCLLSDRIPREY 366


>gi|291517241|emb|CBK70857.1| alanine racemase [Bifidobacterium longum subsp. longum F8]
          Length = 452

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 174/408 (42%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNW-HSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL  +++N  H ++ + G A   AV   VK +AYG G    A A    G          
Sbjct: 33  VDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGATWLGTAQSH 92

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQL-TFYSKLMSCGV 120
           E + LR L     R  +L  ++ G E + FD     ++   + S+P +    +     G 
Sbjct: 93  EALLLRKLGIGPDRCRILTWVYNGTE-VPFDELIAADIDVSVGSLPGIDAVAAAARKLGK 151

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
                ++VD+GF R G        FT   F+  L +L  +            SHLA AD 
Sbjct: 152 PARVHVKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203

Query: 170 PS--SHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P     V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKINKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    +T     +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSI 328
           DG   + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|191639471|ref|YP_001988637.1| Alanine racemase [Lactobacillus casei BL23]
 gi|226711049|sp|B3WAR0|ALR_LACCB RecName: Full=Alanine racemase
 gi|190713773|emb|CAQ67779.1| Alanine racemase [Lactobacillus casei BL23]
 gi|327383565|gb|AEA55041.1| Possible alanine racemase [Lactobacillus casei LC2W]
 gi|327386757|gb|AEA58231.1| Possible alanine racemase [Lactobacillus casei BD-II]
          Length = 378

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 155/376 (41%), Gaps = 36/376 (9%)

Query: 11  IDLTA-LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID TA L N  H +  L    +  AVVK +AYG G  ++A     AG   F V  ++E +
Sbjct: 13  IDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVAILDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHP---YA 125
            LR       + VL GI P Q   I     I + +SS   L     ++      P     
Sbjct: 73  GLRKADYSEPVLVL-GIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELPPLRIH 131

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           L +DTG  R+G +  +AL            Q  +  + +H A AD P       Q+ +F 
Sbjct: 132 LALDTGMGRIGFTEDQALKTAVAFVEAHPKQFVIEGVFTHFATADAPDDTYFKQQVNKFN 191

Query: 184 TLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            L+    S  + +  S +++S  L     +  + R G+++YG    G        P++  
Sbjct: 192 HLVNLLPSRPRYVHVSNSATS--LWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPLEPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ E+ +   ++  AG+ +SYG   +   D  I    IGYADG+   L G          
Sbjct: 250 LSLESELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGFHV------- 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
                 + G    I+G+I MD  M  +  +     G  + + G     +I L DVA  S 
Sbjct: 303 -----LVDGQYCEIVGRICMDQFMIRLPKAYP--AGTKVVLVGQSGDQEITLLDVAKYSK 355

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y++   +  R  +
Sbjct: 356 TIHYEIACNLTPRLKR 371


>gi|23465715|ref|NP_696318.1| alanine racemase [Bifidobacterium longum NCC2705]
 gi|23326396|gb|AAN24954.1| alanine racemase [Bifidobacterium longum NCC2705]
          Length = 452

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 174/408 (42%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNW-HSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL  +++N  H ++ + G A   AV   VK +AYG G    A A    G          
Sbjct: 33  VDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGATWLGTAQSH 92

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQL-TFYSKLMSCGV 120
           E + LR L     R  +L  ++ G E + FD     ++   + S+P +    +     G 
Sbjct: 93  EALLLRKLGIGPDRCHILTWVYNGTE-VPFDELIAADIDVSVGSLPGIDAVAAAARRLGK 151

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
                ++VD+GF R G        FT   F+  L +L  +            SHLA AD 
Sbjct: 152 PARVHVKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203

Query: 170 PS--SHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P     V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKINKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    +T     +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVF-LGGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSI 328
           DG   + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|188595861|pdb|2VD8|A Chain A, The Crystal Structure Of Alanine Racemase From Bacillus
           Anthracis (Ba0252)
 gi|188595862|pdb|2VD8|B Chain B, The Crystal Structure Of Alanine Racemase From Bacillus
           Anthracis (Ba0252)
          Length = 391

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 156/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN  H    +  +    AVV  NAYG     +A     AG
Sbjct: 3   MEEAPFYRDTWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVXGNAYGHDYVPVAXIALEAG 62

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +     L 
Sbjct: 63  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQXEWVDEAIXLW 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  + E   F  +       +L  + +H A AD+  +   
Sbjct: 123 DGSSTMXYHINFDSGMGRIGIRERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYF 182

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             Q   F   +S     G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 183 DXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 242

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++    +  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 243 FLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGF 302

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 303 EV------------LVNGXRVPIVGRVTMDQFMIHL--PCEVPLGTXVTLIGRQGDEYIS 348

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 349 ATEVAEYSGTINYEIITTISFRVPRIF 375


>gi|295113944|emb|CBL32581.1| alanine racemase [Enterococcus sp. 7L76]
          Length = 371

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVQFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|323692158|ref|ZP_08106401.1| hypothetical protein HMPREF9475_01264 [Clostridium symbiosum
           WAL-14673]
 gi|323503732|gb|EGB19551.1| hypothetical protein HMPREF9475_01264 [Clostridium symbiosum
           WAL-14673]
          Length = 369

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 141/343 (41%), Gaps = 22/343 (6%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVE 66
           + IDL  +K+N   + N +  +     V+K NA G G  + +  L    G++   V  V 
Sbjct: 9   ITIDLAKIKSNMEKIRNYVGPDVEIMPVLKANACGHGLIRTSDWLVKECGIKRLAVAQVR 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSCGVSHPYA 125
           E  +LR    QA I VL G+           NLI PV  +       +     G +    
Sbjct: 69  EAEQLRRAGSQAEIMVLGGVPVNNLPYAVQENLILPVFRTQDAALLSALAQENGRTARVH 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++DTG  R+G+   E L+   +      G ++  + +H   A+        +Q+ RF  
Sbjct: 129 IKIDTGLGRIGVEKGEQLEELLDGILPLKGLEIEGVFTHFGEAEVTDPEFTEIQISRFEE 188

Query: 185 LISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            +   +  GI+       ++   +     H+ + R G+   G    +++ + +      E
Sbjct: 189 ALGQIRARGIQPRYIHATNTPSTVRFKKAHYNMIRTGLLWLGYDPCLDEDNRLGLETVLE 248

Query: 240 ARIILIRK--ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  L  K   L+G  + Y       RD+++ +A  GY DGY   L  L  +       G
Sbjct: 249 WKTFLTNKKYVLSGRSMGYWRSFTAKRDTVVGIACFGYGDGY---LEDLGKK-------G 298

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
           G   I G   PI+  + MD T  DITD    E+GD + + G D
Sbjct: 299 GYVLIHGKRAPII-SVCMDQTFLDITDIPDAEIGDTVTLIGHD 340


>gi|319946373|ref|ZP_08020611.1| alanine racemase [Streptococcus australis ATCC 700641]
 gi|319747526|gb|EFV99781.1| alanine racemase [Streptococcus australis ATCC 700641]
          Length = 375

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 159/377 (42%), Gaps = 35/377 (9%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R  +D+ A+  N   + A +     T AVVK NAYG G   +   L    V  F V++++
Sbjct: 10  RAYVDVEAIAYNVQQIQAHIPKETLTFAVVKANAYGHGVVPVVERLLPL-VDAFCVSNLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---P 123
           E +++R    +  I +L G+ P +   I     I    +V  L +   L++         
Sbjct: 69  EALEVRQVAGEKPILIL-GVAPVEHVAIAIKEGIRY--TVASLEWLKALLAKKTDLSGLK 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VD+G  R+G    E L            ++  I +H A AD+        QL+RF+
Sbjct: 126 VHIKVDSGMGRIGFRSAEDLQEAMILLRDHGAEVEGIFTHFATADEKDDRHFQNQLQRFK 185

Query: 184 TLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
            L+       K + AS  +S+  L   +  F   R G  +YG      ++   + ++  +
Sbjct: 186 CLLELLPFTPKIVHAS--NSATTLWHADTIFNAVRLGDVMYGLNPSGRELELPYDIRPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E  ++ ++    G+ V YG   + + +  I    IGYADG+   + G           
Sbjct: 244 SLETELVHVKPLEVGQTVGYGATYQTSDEEWIGTIPIGYADGWTRDMQGFHV-------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G   PI+G+++MD     +  +  I  G  + + G D    I + DVA   GT
Sbjct: 296 ----LVDGQFCPIVGRVSMDQITIRLPKAYPI--GTKVVLIGVDGDLAITITDVADYRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  +  R  + Y
Sbjct: 350 INYEVVCVLSDRVPRVY 366


>gi|226226855|ref|YP_002760961.1| alanine racemase [Gemmatimonas aurantiaca T-27]
 gi|226090046|dbj|BAH38491.1| alanine racemase [Gemmatimonas aurantiaca T-27]
          Length = 403

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 162/411 (39%), Gaps = 62/411 (15%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALY----- 53
           M   +   L +D +AL+   H++  L  +AR     +VK ++YGLG   +  AL      
Sbjct: 1   MTRQDRAWLDVDGSALR---HNLAVLRQHARVPLLPMVKADSYGLGAIGVCRALGVPFAE 57

Query: 54  ----------NAGVQDFF---VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI 100
                      AG    +   + S++E   LR    + RI     +   +       ++ 
Sbjct: 58  GSVHAPTSTGTAGADAPWGVGIASLDEAEALRDAGCEGRILCATPLLARELPRALALSVR 117

Query: 101 PVISSVPQLTFYSKLMSC-----GVSH--------PYALQVDTGFNRLGLSLQEALDFTH 147
           P +     L  +  L +      GV+H        PY L +DTG  R G           
Sbjct: 118 PALHRAEDLVAWQALSAARGVAHGVAHGVACDAVAPYHLSIDTGMARAGARWDTVARLRD 177

Query: 148 NSFNKKLGQLSLIISHLACADD--PSSHVNSVQLERFRTLISHY--KGIEASLASSSGIL 203
                       + +H   AD+  PS      +     T++      GI     +S GI 
Sbjct: 178 AVLAVPP---EGVFTHFHSADESLPSRDEQDARFADALTVLRDVLPAGILEHRDNSGGIA 234

Query: 204 -LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262
                   QL RPGI+LY G    +    ++ V    AR++ +R  L GE VSYG     
Sbjct: 235 SRTTGSPGQLARPGIALYAGM--FSAELGLRQVAHLRARVVDVRDVLPGESVSYGATWTA 292

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
                IA  + GYADGY   LS +           G+  I G   P++G++TMDMTM D+
Sbjct: 293 EGTHRIATLSAGYADGYRRHLSNV-----------GEVLIHGTRCPVVGRVTMDMTMVDV 341

Query: 323 TDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + ++    GD   + G D    +  + VA  +G + Y+LLV +  R    +
Sbjct: 342 S-AVRCAPGDVATMLGADGSQVLTAEAVAGRAGVSPYELLVGLCLRVPAIH 391


>gi|182684640|ref|YP_001836387.1| alanine racemase [Streptococcus pneumoniae CGSP14]
 gi|182629974|gb|ACB90922.1| alanine racemase [Streptococcus pneumoniae CGSP14]
          Length = 374

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 20  IHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 78

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 79  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 132

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   K    +  I +H A AD+ S    + QLERF+
Sbjct: 133 VHLKIDSGMGRIGFREVSEVEQAQDLLQKHGVCVEGIFTHFATADEESDDYFNAQLERFK 192

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 193 TILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 250 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 303

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 304 VDGQA------CPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRV 355

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 356 TINYEVVCLLSDRIPREY 373


>gi|322690655|ref|YP_004220225.1| alanine racemase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455511|dbj|BAJ66133.1| alanine racemase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 452

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 174/408 (42%), Gaps = 58/408 (14%)

Query: 11  IDLTALKNNW-HSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +DL  +++N  H ++ + G A   AV   VK +AYG G    A A    G          
Sbjct: 33  VDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGATWLGTAQSH 92

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQL-TFYSKLMSCGV 120
           E + LR L     R  +L  ++ G E + FD     ++   + S+P +    +     G 
Sbjct: 93  EALLLRKLGIGPDRCRILTWVYNGTE-VPFDELIAADIDVSVGSLPGIDAVAAAARRLGK 151

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADD 169
                ++VD+GF R G        FT   F+  L +L  +            SHLA AD 
Sbjct: 152 PARVHVKVDSGFGRNG--------FTPAGFDAALAKLVPLAKGGVLHIVGQWSHLAVADS 203

Query: 170 PS--SHVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLY 220
           P     V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKINKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P    +T     +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVF-LGGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSI 328
           DG   + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|310287816|ref|YP_003939074.1| Alanine racemase [Bifidobacterium bifidum S17]
 gi|309251752|gb|ADO53500.1| Alanine racemase [Bifidobacterium bifidum S17]
          Length = 452

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 127/280 (45%), Gaps = 41/280 (14%)

Query: 126 LQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPS--SHVNS 176
           ++VD+GF R G +       L + +   H      +GQ S    HLA AD P     V S
Sbjct: 157 VKVDSGFGRNGFTPAGFDAALAKLVPLAHEGVLHIVGQWS----HLAVADSPDVPEFVAS 212

Query: 177 V--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              Q+E F       +  GI      LA+++  L  P  HF+LTRPGI LYG        
Sbjct: 213 TDRQIESFTEFTRRMEAAGIAPEIRHLANTAATLNRPEIHFELTRPGIGLYGYEPDPAMG 272

Query: 230 HP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            P    ++  +T +A++  ++   AG  VSYG       ++  A+  +GYADG   + SG
Sbjct: 273 TPRDWHLKPAMTLQAQLGTVKDVEAGHGVSYGRTYLTPDNTSTAIVPLGYADGIHRSASG 332

Query: 286 LDSEHSPSVFLGGKGFIK------GYMVPILGKITMDMTMFDITDS---LSIEVGDYIQI 336
            D + +  V   G G ++        ++ + G++ MD  + D+  S   L +  GD +++
Sbjct: 333 FDMQGAKHVEKAG-GPVRVMTSAGPRLLHVCGRVCMDQFIVDLHGSAAELGVHEGDTVEL 391

Query: 337 FGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 392 FGPGRGEQYGEPTADDWARAADTISYEVFTCLRNRIPRLY 431


>gi|149011437|ref|ZP_01832684.1| alanine racemase [Streptococcus pneumoniae SP19-BS75]
 gi|225859452|ref|YP_002740962.1| alanine racemase [Streptococcus pneumoniae 70585]
 gi|303258631|ref|ZP_07344611.1| alanine racemase [Streptococcus pneumoniae SP-BS293]
 gi|303261794|ref|ZP_07347740.1| alanine racemase [Streptococcus pneumoniae SP14-BS292]
 gi|303263658|ref|ZP_07349580.1| alanine racemase [Streptococcus pneumoniae BS397]
 gi|303266834|ref|ZP_07352713.1| alanine racemase [Streptococcus pneumoniae BS457]
 gi|303269891|ref|ZP_07355633.1| alanine racemase [Streptococcus pneumoniae BS458]
 gi|254802388|sp|C1C8T6|ALR_STRP7 RecName: Full=Alanine racemase
 gi|147764427|gb|EDK71358.1| alanine racemase [Streptococcus pneumoniae SP19-BS75]
 gi|225720818|gb|ACO16672.1| alanine racemase [Streptococcus pneumoniae 70585]
 gi|301802398|emb|CBW35152.1| alanine racemase [Streptococcus pneumoniae INV200]
 gi|302636877|gb|EFL67366.1| alanine racemase [Streptococcus pneumoniae SP14-BS292]
 gi|302640132|gb|EFL70587.1| alanine racemase [Streptococcus pneumoniae SP-BS293]
 gi|302640569|gb|EFL70974.1| alanine racemase [Streptococcus pneumoniae BS458]
 gi|302643602|gb|EFL73870.1| alanine racemase [Streptococcus pneumoniae BS457]
 gi|302646696|gb|EFL76921.1| alanine racemase [Streptococcus pneumoniae BS397]
          Length = 367

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 72  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   K    +  I +H A AD+ S    + QLERF+
Sbjct: 126 VHLKIDSGMGRIGFREVSEVEQAQDLLQKHGVCVEGIFTHFATADEESDDYFNAQLERFK 185

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 186 TILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 243 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 297 VDGQA------CPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRV 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 349 TINYEVVCLLSDRIPREY 366


>gi|167465430|ref|ZP_02330519.1| alanine racemase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 314

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 24/258 (9%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           ++VD+G +R+GL   +EA+ +           L  + +H ACAD+       +Q E+F  
Sbjct: 51  VKVDSGMHRIGLYKEEEAVSYLKQIARMPHICLEGLFTHYACADEADKAYTRLQYEKFSR 110

Query: 185 LISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH-PMQTVV 236
           ++   K  GI+       +S+  +  P   + + R GI++YG   ++K++ +   ++ V+
Sbjct: 111 VVHEVKRLGIDIPYIHAGNSAAAIDTPELVYNMARLGIAMYGLYPSEKVDHTIIKLEPVM 170

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + + R+I  +    G  +SYG       +  I    IGYADG+   LS            
Sbjct: 171 SLKTRMIHDKWLSEGSGISYGTIYHTKGEERIGTLPIGYADGFSRMLS-----------T 219

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                I+G  VPI+G+I MD  M +IT     E GD + + G      I  +++A   GT
Sbjct: 220 KANALIRGKRVPIVGRICMDQCMLNITGVPEAEAGDEVVLIGRQGDEVIPAEEIAGHLGT 279

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY++   +  R  + Y 
Sbjct: 280 INYEVTCMMAHRIPRVYV 297


>gi|29375437|ref|NP_814591.1| alanine racemase [Enterococcus faecalis V583]
 gi|227554961|ref|ZP_03985008.1| alanine racemase [Enterococcus faecalis HH22]
 gi|229548787|ref|ZP_04437512.1| alanine racemase [Enterococcus faecalis ATCC 29200]
 gi|255971304|ref|ZP_05421890.1| alanine racemase [Enterococcus faecalis T1]
 gi|255973923|ref|ZP_05424509.1| alanine racemase [Enterococcus faecalis T2]
 gi|256854302|ref|ZP_05559666.1| alanine racemase [Enterococcus faecalis T8]
 gi|256957289|ref|ZP_05561460.1| alanine racemase [Enterococcus faecalis DS5]
 gi|257077737|ref|ZP_05572098.1| alanine racemase [Enterococcus faecalis JH1]
 gi|257081097|ref|ZP_05575458.1| alanine racemase [Enterococcus faecalis E1Sol]
 gi|257086191|ref|ZP_05580552.1| alanine racemase [Enterococcus faecalis D6]
 gi|257415416|ref|ZP_05592410.1| alanine racemase [Enterococcus faecalis AR01/DG]
 gi|257418447|ref|ZP_05595441.1| alanine racemase [Enterococcus faecalis T11]
 gi|257421098|ref|ZP_05598088.1| alanine racemase [Enterococcus faecalis X98]
 gi|294781263|ref|ZP_06746609.1| alanine racemase [Enterococcus faecalis PC1.1]
 gi|307267928|ref|ZP_07549316.1| alanine racemase [Enterococcus faecalis TX4248]
 gi|307277317|ref|ZP_07558419.1| alanine racemase [Enterococcus faecalis TX2134]
 gi|307278454|ref|ZP_07559529.1| alanine racemase [Enterococcus faecalis TX0860]
 gi|307286658|ref|ZP_07566744.1| alanine racemase [Enterococcus faecalis TX0109]
 gi|307291702|ref|ZP_07571576.1| alanine racemase [Enterococcus faecalis TX0411]
 gi|312901611|ref|ZP_07760882.1| alanine racemase [Enterococcus faecalis TX0470]
 gi|312952881|ref|ZP_07771742.1| alanine racemase [Enterococcus faecalis TX0102]
 gi|29342897|gb|AAO80661.1| alanine racemase [Enterococcus faecalis V583]
 gi|227175904|gb|EEI56876.1| alanine racemase [Enterococcus faecalis HH22]
 gi|229306016|gb|EEN72012.1| alanine racemase [Enterococcus faecalis ATCC 29200]
 gi|255962322|gb|EET94798.1| alanine racemase [Enterococcus faecalis T1]
 gi|255966795|gb|EET97417.1| alanine racemase [Enterococcus faecalis T2]
 gi|256709862|gb|EEU24906.1| alanine racemase [Enterococcus faecalis T8]
 gi|256947785|gb|EEU64417.1| alanine racemase [Enterococcus faecalis DS5]
 gi|256985767|gb|EEU73069.1| alanine racemase [Enterococcus faecalis JH1]
 gi|256989127|gb|EEU76429.1| alanine racemase [Enterococcus faecalis E1Sol]
 gi|256994221|gb|EEU81523.1| alanine racemase [Enterococcus faecalis D6]
 gi|257157244|gb|EEU87204.1| alanine racemase [Enterococcus faecalis ARO1/DG]
 gi|257160275|gb|EEU90235.1| alanine racemase [Enterococcus faecalis T11]
 gi|257162922|gb|EEU92882.1| alanine racemase [Enterococcus faecalis X98]
 gi|294451599|gb|EFG20055.1| alanine racemase [Enterococcus faecalis PC1.1]
 gi|306497250|gb|EFM66793.1| alanine racemase [Enterococcus faecalis TX0411]
 gi|306502136|gb|EFM71420.1| alanine racemase [Enterococcus faecalis TX0109]
 gi|306504960|gb|EFM74155.1| alanine racemase [Enterococcus faecalis TX0860]
 gi|306506024|gb|EFM75192.1| alanine racemase [Enterococcus faecalis TX2134]
 gi|306515569|gb|EFM84096.1| alanine racemase [Enterococcus faecalis TX4248]
 gi|310629184|gb|EFQ12467.1| alanine racemase [Enterococcus faecalis TX0102]
 gi|311291299|gb|EFQ69855.1| alanine racemase [Enterococcus faecalis TX0470]
 gi|315027037|gb|EFT38969.1| alanine racemase [Enterococcus faecalis TX2137]
 gi|315032367|gb|EFT44299.1| alanine racemase [Enterococcus faecalis TX0017]
 gi|315034374|gb|EFT46306.1| alanine racemase [Enterococcus faecalis TX0027]
 gi|315153136|gb|EFT97152.1| alanine racemase [Enterococcus faecalis TX0031]
 gi|315155155|gb|EFT99171.1| alanine racemase [Enterococcus faecalis TX0043]
 gi|315157689|gb|EFU01706.1| alanine racemase [Enterococcus faecalis TX0312]
 gi|315165076|gb|EFU09093.1| alanine racemase [Enterococcus faecalis TX1302]
 gi|315167887|gb|EFU11904.1| alanine racemase [Enterococcus faecalis TX1341]
 gi|315171754|gb|EFU15771.1| alanine racemase [Enterococcus faecalis TX1342]
 gi|315574112|gb|EFU86303.1| alanine racemase [Enterococcus faecalis TX0309B]
 gi|315581739|gb|EFU93930.1| alanine racemase [Enterococcus faecalis TX0309A]
 gi|323480028|gb|ADX79467.1| alanine racemase [Enterococcus faecalis 62]
 gi|327534432|gb|AEA93266.1| alanine racemase [Enterococcus faecalis OG1RF]
 gi|329575938|gb|EGG57459.1| alanine racemase [Enterococcus faecalis TX1467]
          Length = 371

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|168487532|ref|ZP_02712040.1| alanine racemase [Streptococcus pneumoniae CDC1087-00]
 gi|183569644|gb|EDT90172.1| alanine racemase [Streptococcus pneumoniae CDC1087-00]
          Length = 367

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 168/381 (44%), Gaps = 43/381 (11%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ I L A++ N   M   +       AVVK NAYG G   +A A+ +  V  F V++++
Sbjct: 10  KVLIHLGAIRQNIQQMGTHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNID 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           E ++LR       I +L G+   +   +   +D  L     +V  L +   L+   V   
Sbjct: 69  EAIELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLT 122

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLE
Sbjct: 123 GLTVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLE 182

Query: 181 RFRTLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPM 232
           RF+T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +
Sbjct: 183 RFKTILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         
Sbjct: 240 IPALTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
           SV + G+        PI+G+++MD     +     +  G  + + G     +I    VA 
Sbjct: 294 SVLVDGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVAT 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY+++  +  R  + Y
Sbjct: 346 YRVTINYEVVCLLSDRIPREY 366


>gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
 gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
          Length = 824

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 165/376 (43%), Gaps = 34/376 (9%)

Query: 9   LKIDLTAL-KN-NWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+ KN NW+  + +    +   ++K NAYG G  +IA  L +  V    V   +
Sbjct: 465 LEVNLNAVVKNLNWYR-SFMKPETKLVCMIKANAYGAGSVEIAKTLQDHRVDYLAVAVAD 523

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH- 122
           EGV LR     + I ++   +P     K +FD  L P + S   L    K     G++  
Sbjct: 524 EGVTLRRNGITSNIMIM---NPEMTAFKTMFDYELEPEVYSFRLLEALIKAAEKEGITDF 580

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLER 181
           P  +++DTG +RLG      +D   +    +   +   + SH   +D       S    +
Sbjct: 581 PVHIKLDTGMHRLGFDPINDMDKLIDRLKHQNAVIPRSVFSHFVGSDSDDFDDFSAN--Q 638

Query: 182 FRTLISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F    +  K ++A+        + +S+GI   P     + R G+ LYG   + N+   + 
Sbjct: 639 FALFDAGSKKLQAAFDHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGINSRNNEI--IN 696

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V T +  I+ +R    G+ V Y  +  +  DS+IA   IGYADG    L    + H   
Sbjct: 697 NVSTLKTTILQMRHIPVGDTVGYSRKGTIEHDSVIAAIPIGYADGLNRHLG---NRHCYC 753

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
           +  G K          +G I MD+ M D+T  +  + GD ++IFG  + +  ++    T 
Sbjct: 754 LVNGQKA-------EYVGNICMDVAMIDVT-GIDCKEGDTVEIFGDHLPVTVLSDVLDTI 805

Query: 354 NYDLLVRIGTRYAKFY 369
            Y++L  I  R  + Y
Sbjct: 806 PYEVLTNISDRVKRIY 821


>gi|315174906|gb|EFU18923.1| alanine racemase [Enterococcus faecalis TX1346]
          Length = 371

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 163/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N  +    L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQNECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 EGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|229546693|ref|ZP_04435418.1| alanine racemase [Enterococcus faecalis TX1322]
 gi|229308178|gb|EEN74165.1| alanine racemase [Enterococcus faecalis TX1322]
          Length = 371

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSIVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|227533031|ref|ZP_03963080.1| alanine racemase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189432|gb|EEI69499.1| alanine racemase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 378

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 156/376 (41%), Gaps = 36/376 (9%)

Query: 11  IDLTA-LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID TA L N  H +  L    +  AVVK +AYG G  ++A     AG   F V  ++E +
Sbjct: 13  IDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVAILDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHP---YA 125
            LR       + VL GI P Q   I     I + +SS   L     ++      P     
Sbjct: 73  GLRKADYSEPVLVL-GIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELPPLRIH 131

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           L +DTG  R+G +  +AL            Q  +  + +H A AD P       Q+++F 
Sbjct: 132 LALDTGMGRIGFTEDQALKTAVAFVEAHPKQFVIEGVFTHFATADAPDDTYFKQQVDKFN 191

Query: 184 TLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            L+    S  + +  S +++S  L     +  + R G+++YG    G        P++  
Sbjct: 192 HLVDLLPSRPRYVHVSNSATS--LWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPLEPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ E+ +   ++  AG+ +SYG   +   D  I    IGYADG+   L G          
Sbjct: 250 LSLESELTYCKQVHAGDGISYGVTYRAKGDESIGTVPIGYADGWLRRLQGFHV------- 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
                 + G    I+G+I MD  M  +  +     G  + + G     +I L DVA  S 
Sbjct: 303 -----LVDGQYCEIVGRICMDQFMIRLPKAYP--AGTKVVLVGQSGDQEITLLDVAKYSK 355

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y++   +  R  +
Sbjct: 356 TIHYEIACNLTPRLKR 371


>gi|300859953|ref|ZP_07106041.1| alanine racemase [Enterococcus faecalis TUSoD Ef11]
 gi|300850771|gb|EFK78520.1| alanine racemase [Enterococcus faecalis TUSoD Ef11]
 gi|315145182|gb|EFT89198.1| alanine racemase [Enterococcus faecalis TX2141]
 gi|315163090|gb|EFU07107.1| alanine racemase [Enterococcus faecalis TX0645]
          Length = 371

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEATLQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|148989349|ref|ZP_01820717.1| alanine racemase [Streptococcus pneumoniae SP6-BS73]
 gi|168493602|ref|ZP_02717745.1| alanine racemase [Streptococcus pneumoniae CDC3059-06]
 gi|194398697|ref|YP_002038309.1| alanine racemase [Streptococcus pneumoniae G54]
 gi|226711062|sp|B5E745|ALR_STRP4 RecName: Full=Alanine racemase
 gi|147925099|gb|EDK76179.1| alanine racemase [Streptococcus pneumoniae SP6-BS73]
 gi|183576433|gb|EDT96961.1| alanine racemase [Streptococcus pneumoniae CDC3059-06]
 gi|194358364|gb|ACF56812.1| alanine racemase [Streptococcus pneumoniae G54]
 gi|332199723|gb|EGJ13798.1| alanine racemase [Streptococcus pneumoniae GA41317]
          Length = 367

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 166/378 (43%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 72  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF+
Sbjct: 126 VHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERFK 185

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 186 TILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 243 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 297 VDGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRV 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 349 TINYEVVCLLSDRIPREY 366


>gi|229003241|ref|ZP_04161078.1| Alanine racemase [Bacillus mycoides Rock1-4]
 gi|228758011|gb|EEM07219.1| Alanine racemase [Bacillus mycoides Rock1-4]
          Length = 389

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 163/387 (42%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M  + F R   ++++L A+ NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MGKSSFYRDTWVEVNLDAIYNNVTHIKEIIPESVEIFAVVKANAYGHDYVLVARTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I V+    P    +  + ++   +     +    ++ 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVIGPSPPRDVNVAAENDVALTVFQKEWVEEAVEIW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +  +    +L  I +H A AD+  +   
Sbjct: 121 DSPFPMKFHINFDSGMGRIGIRERKELKEFLRSLEDAPFLELEGIYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
             Q   F   +S  K  G+  +    A+S+  +      F   R GI++YG   + +I  
Sbjct: 181 DKQYNTFLEQLSWLKAFGVNPTFIHTANSAATMRFDGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 229 SHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
             P  ++  ++    +  I++ + G+ +SY    +   +  IA   IGYADG+   L G 
Sbjct: 241 YLPIKLEPALSLHTTVEHIKRVIKGDRISYNVTYRTKTEEWIATVPIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
           +              ++G  VPI+G+ITMD  M  +     + +G  + + G      I 
Sbjct: 301 EV------------LVQGKRVPIVGRITMDQCMLHL--PCEVPLGTKVTLIGQQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  S T NY+++  I  R  + +
Sbjct: 347 ATEVAEYSNTINYEIIATISFRVPRVF 373


>gi|228989418|ref|ZP_04149407.1| Alanine racemase [Bacillus pseudomycoides DSM 12442]
 gi|228770365|gb|EEM18940.1| Alanine racemase [Bacillus pseudomycoides DSM 12442]
          Length = 389

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 161/390 (41%), Gaps = 38/390 (9%)

Query: 1   MHSNEFLR---LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M  + F R   ++++L  + NN  H    +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEKSSFYRDTWVEVNLDEIYNNVTHIKEIIPESVEIFAVVKANAYGHDYVLVARTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I V+    P    +  + ++   +     +    ++ 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVIGPSPPRDVNVAAENDVALTVFQKEWVEEAVEIW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L +F  +  +    +L  + +H A AD+  +   
Sbjct: 121 DSPFPMKFHINFDSGMGRIGIRERKELKEFLRSLEDAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G+  +    A+S+  +      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKAFGVNPTFIHTANSAATMRFDGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 ----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
               K  P  ++ T  A I   ++ + G+ +SY    +   +  IA   IGYADG+   L
Sbjct: 241 YLPIKLEPALSLHTTVAHI---KRVIKGDRISYNVTYRTKTEEWIATVPIGYADGWLRRL 297

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
            G +              ++G  VPI+G+ITMD  M  +     + +G  + + G     
Sbjct: 298 QGFEV------------LVQGKRVPIVGRITMDQCMLHL--PCEVPLGTKVTLIGQQGDE 343

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I   +VA  S T NY+++  I  R  + +
Sbjct: 344 YISATEVAEYSNTINYEIIATISFRVPRVF 373


>gi|86134588|ref|ZP_01053170.1| Alanine racemase [Polaribacter sp. MED152]
 gi|85821451|gb|EAQ42598.1| Alanine racemase [Polaribacter sp. MED152]
          Length = 366

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 164/391 (41%), Gaps = 56/391 (14%)

Query: 3   SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +N    L+ID  AL +N +   N L+ N +  AVVK  A+G G + +  A +     D+F
Sbjct: 2   NNHVSVLEIDSKALVHNLNYFKNKLNQNTKILAVVK--AFGYGSDGVLVADFLKDKVDYF 59

Query: 62  -VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSC 118
            V    EG+ LR    +  I VL   HP    +  I D  L P + +      + +L   
Sbjct: 60  AVAYAHEGIALREANIKTPILVL---HPQIATLQDIIDYRLEPNLYNFKIFHAFLELADT 116

Query: 119 G--VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACAD 168
              +++P  ++ +TG NRLG        F H    K + +L          + SHLA ++
Sbjct: 117 IPLMNYPVHIKFNTGLNRLG--------FWHTDIPKIISELKETNHIKVQSLFSHLAASE 168

Query: 169 D-PSSHVNSVQLERFRTLISH-YKGIEAS----LASSSGILLGPNYHFQLTRPGISLYG- 221
           D       + QL  F  ++   YK +       + ++SG++      F + R GI LYG 
Sbjct: 169 DLEEKDFTNNQLNSFAYIVQQFYKHLSYEPMLHILNTSGVVNYAKAQFDMVRVGIGLYGF 228

Query: 222 -----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
                 T ++  +H ++++++   +I LI     GE V Y       + S  A   +G+A
Sbjct: 229 GNDDEETKQLKNTHNLKSIIS---QIHLIE---PGETVGYNRAFVAKKPSKSATIPVGHA 282

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           DG    L              G   I      I+G + MDM M D+T  +    GD + I
Sbjct: 283 DGLSRKLGN----------EAGYVLINNQKAKIIGNVCMDMIMVDVT-KIDCNEGDEVII 331

Query: 337 FGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           F     L  +A AS T  Y+ L  I  R  K
Sbjct: 332 FNSQDMLKHIADASETIVYETLTSISPRVKK 362


>gi|262368964|ref|ZP_06062293.1| alanine racemase [Acinetobacter johnsonii SH046]
 gi|262316642|gb|EEY97680.1| alanine racemase [Acinetobacter johnsonii SH046]
          Length = 408

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 149/340 (43%), Gaps = 23/340 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I++   + N  ++   L   ++  AV+K +AYG G E + P++    V    +TS  E
Sbjct: 45  VEINVQTFEQNIQTLQQQLQDKSQFCAVMKADAYGHGIELLMPSIIKLNVPCVGITSNAE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
              +R    Q R+  L      + +     N+  ++ +  Q    S+     G+   Y L
Sbjct: 105 AALVRKSGYQGRLLRLRAATDQEIQNAASLNMEELLGNYEQAQRLSEWAKQQGLILEYHL 164

Query: 127 QVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVN-SVQLERF 182
            ++ G  +R GL L  AL         KL  L L  I++H A  D+       +V  ++ 
Sbjct: 165 GLNAGGMDRNGLELNSALGKQQALRMTKLPNLKLVGIMTHYAVEDEKYVRERLAVFNQQT 224

Query: 183 RTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
             +I   K    +L    A+S   L  P  H  + R G  +YG  D +      + ++T 
Sbjct: 225 DWIIKKAKLKREALTLHTANSFATLTVPESHLDMVRAGGVIYG--DSLPDRVEYKKLMTF 282

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           + ++  +   L G  V Y     L RDSL+A   +GY+DGY    S          ++  
Sbjct: 283 KTQVATVNAYLKGTTVGYDQTYTLKRDSLLANLPLGYSDGYRRAFSN-------KAYV-- 333

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
              I+G+ VP++G+ +M+ TM DITD   I   D + +FG
Sbjct: 334 --LIRGHKVPVVGRTSMNTTMVDITDFPDIRANDEVVLFG 371


>gi|322688667|ref|YP_004208401.1| alanine racemase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460003|dbj|BAJ70623.1| alanine racemase [Bifidobacterium longum subsp. infantis 157F]
          Length = 452

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 47/283 (16%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADDPS--S 172
           ++VD+GF R G        FT   F+  L +L  +            SHLA AD P    
Sbjct: 157 VKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADSPDVPE 208

Query: 173 HVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
            V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LYG    
Sbjct: 209 FVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLYGYEPD 268

Query: 226 INKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                P    +T     +A++  ++   AG  +SYG       ++  A+  +GYADG   
Sbjct: 269 PAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYADGIHR 328

Query: 282 TLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSIEVGDY 333
           + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +  GD 
Sbjct: 329 SASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGVHEGDT 388

Query: 334 IQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 389 VELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|256032536|pdb|3E5P|A Chain A, Crystal Structure Of Alanine Racemase From E.Faecalis
 gi|256032537|pdb|3E5P|B Chain B, Crystal Structure Of Alanine Racemase From E.Faecalis
 gi|256032538|pdb|3E5P|C Chain C, Crystal Structure Of Alanine Racemase From E.Faecalis
 gi|256032547|pdb|3E6E|A Chain A, Crystal Structure Of Alanine Racemase From E.Faecalis
           Complex With Cycloserine
 gi|256032548|pdb|3E6E|B Chain B, Crystal Structure Of Alanine Racemase From E.Faecalis
           Complex With Cycloserine
 gi|256032549|pdb|3E6E|C Chain C, Crystal Structure Of Alanine Racemase From E.Faecalis
           Complex With Cycloserine
          Length = 371

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 AGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGPVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|256761608|ref|ZP_05502188.1| alanine racemase [Enterococcus faecalis T3]
 gi|256682859|gb|EEU22554.1| alanine racemase [Enterococcus faecalis T3]
          Length = 371

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 163/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K++ S+ ++
Sbjct: 185 SGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLSPSYGLK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|254388378|ref|ZP_05003613.1| alanine racemase [Streptomyces clavuligerus ATCC 27064]
 gi|197702100|gb|EDY47912.1| alanine racemase [Streptomyces clavuligerus ATCC 27064]
          Length = 367

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 144/359 (40%), Gaps = 35/359 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH +E   + +DL A+++N   +  +   A   AVVK NAYG G   +A A   AG +  
Sbjct: 16  MHRSE---ITLDLDAVRHNARQLIKMVDGAELWAVVKGNAYGHGAVPVAGAALEAGARAL 72

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V ++ EG+ LR   P+ARI VL  + PG         L  V      L   S  +    
Sbjct: 73  CVATLGEGLALRERFPRARIVVLGPVGPGSVPAASRAGLECVAHDDASLEALSGAVE--- 129

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              Y ++V+ G NR G       D          GQ S     L         V ++QL 
Sbjct: 130 ---YHIKVNLGLNRYG--FDRIPDRLREQPVGVFGQFSHAHVDL--------EVTALQLA 176

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVVTA 238
           RF             + +SS  L  P       R G +L G +   N S   P++  ++ 
Sbjct: 177 RFLEQCEAVPRATRHVCNSSAALSLPAARLDAVRSGSALLGVSLMTNPSSRLPLRPALSW 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +  +R   AG  V Y G  ++TR ++  V  +GY DG+   L G       +V +G 
Sbjct: 237 ISCLAQVRNLPAGAAVGYEGAHRVTRPTVTGVVPVGYGDGFVSRLVGT------TVLVGD 290

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           +         ++G ++MD     +     I  G  + + G  + ++     +   N++L
Sbjct: 291 EPAT------VIGSVSMDALTVALPRRFPI--GTPVTLIGDGLPMESHLRFASMANWEL 341


>gi|227546323|ref|ZP_03976372.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213304|gb|EEI81176.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 452

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 47/283 (16%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADDPS--S 172
           ++VD+GF R G        FT   F+  L +L  +            SHLA AD P    
Sbjct: 157 VKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADSPDVPE 208

Query: 173 HVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
            V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LYG    
Sbjct: 209 FVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLYGYEPD 268

Query: 226 INKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                P    +T     +A++  ++   AG  +SYG       ++  A+  +GYADG   
Sbjct: 269 PAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYADGIHR 328

Query: 282 TLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSIEVGDY 333
           + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +  GD 
Sbjct: 329 SASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGVHEGDT 388

Query: 334 IQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 389 VELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|116495991|ref|YP_807725.1| alanine racemase [Lactobacillus casei ATCC 334]
 gi|122262609|sp|Q034T9|ALR_LACC3 RecName: Full=Alanine racemase
 gi|116106141|gb|ABJ71283.1| alanine racemase [Lactobacillus casei ATCC 334]
          Length = 378

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 156/376 (41%), Gaps = 36/376 (9%)

Query: 11  IDLTA-LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID TA L N  H +  L    +  AVVK +AYG G  ++A     AG   F V  ++E +
Sbjct: 13  IDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVAILDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHP---YA 125
            LR       + VL GI P Q   I     I + +SS   L     ++      P     
Sbjct: 73  GLRKADYSEPVLVL-GIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELPPLRIH 131

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
           L +DTG  R+G +  +AL            Q  +  + +H A AD P       Q+++F 
Sbjct: 132 LALDTGMGRIGFTEDQALKTAVAFVEAHPKQFVIEGVFTHFATADAPDDTYFKQQVDKFN 191

Query: 184 TLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTV 235
            L+    S  + +  S +++S  L     +  + R G+++YG    G        P++  
Sbjct: 192 HLVNLLPSRPRYVHVSNSATS--LWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPLEPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++ +   ++  AG+ +SYG   +   D  I    IGYADG+   L G          
Sbjct: 250 LSLKSELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGFHV------- 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
                 + G    I+G+I MD  M  +  +     G  + + G     +I L DVA  S 
Sbjct: 303 -----LVDGQYCEIVGRICMDQFMIRLPKAYP--AGTKVVLVGQSGDQEITLLDVAKYSK 355

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y++   +  R  +
Sbjct: 356 TIHYEIACNLTPRLKR 371


>gi|322412634|gb|EFY03542.1| alanine racemase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 366

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 155/372 (41%), Gaps = 29/372 (7%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S    +    +T AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENIASAQEHIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + ++     +   ++S+  L                +++
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELELAITHQVTVTVASLEWLAMAKPEWPDLKGLKVHIKI 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL     +D           ++  I +H A AD+  +     QL  F  L+  
Sbjct: 131 DSGMGRIGLRSVTEVDNLIAGLKSMGTEVEGIFTHFATADEADTVKFEQQLTFFTNLVDQ 190

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEAR 241
                  + AS +++S  L      F   R GI +YG      ++    P++     E+ 
Sbjct: 191 LADKPSLVHASNSATS--LWHSETIFNAVRLGIVMYGLNPSGSELALPFPLKEAFNLESV 248

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ +++   GE V YG   K      +    IGYADG+   + G                
Sbjct: 249 LVHVKEIAPGETVGYGATYKAQTREYVGTVPIGYADGWTRDMQGFTV------------L 296

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           ++G    I+G+++MD     +  +  +  G  + + G D    I   D+A    T NY++
Sbjct: 297 VEGQTCEIIGRVSMDQMTIRLPRAYPL--GTKVTLIGQDQEKVISATDIANYRNTINYEV 354

Query: 358 LVRIGTRYAKFY 369
           L  +  R  + Y
Sbjct: 355 LCLLSDRIPRVY 366


>gi|212696143|ref|ZP_03304271.1| hypothetical protein ANHYDRO_00679 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676772|gb|EEB36379.1| hypothetical protein ANHYDRO_00679 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 367

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 163/378 (43%), Gaps = 33/378 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  N  L   +DL  + NN   +   S N++  AV+K + YGLG  +IA  + N  +   
Sbjct: 1   MQENYLL---VDLDKILNNIKLIKEKSINSKICAVLKADGYGLGALEIAKYI-NDQIDYI 56

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V   +E   LR       I +L  +   + K+    N+   I  +     Y++ ++  +
Sbjct: 57  AVAQFKEAKYLRENGIDKPILILGYLPIDKYKVCSSLNIDVGIYDLD----YARKINESI 112

Query: 121 SHPYALQV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  +  DTG  RLG    E          KKL  +    SH A AD+       +Q
Sbjct: 113 LDTINCHILLDTGHTRLGFRDFEIEKIKELKKFKKLNFIGAF-SHFATADEKDLTYTKIQ 171

Query: 179 LERFRTLISHYKG-IEASLASSSGILLGPNYHFQ--LTRPGISLYG--GTDKINKSHPMQ 233
            ++F  +I   K   +  L   S       Y+F+  L R GI +YG   +D I +   ++
Sbjct: 172 YQKFTYIIEKIKDDFDLKLVHISNTAASMEYNFKSDLLRLGIGIYGIYPSDYIREISKIK 231

Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
              V   +A+I  I+    G  +SYG      +D  +A  +IGYADG+  + S +     
Sbjct: 232 LCQVFEFKAQISFIKDVRKGTSISYGRTYIAPKDIKVATVSIGYADGFKRSFSNI----- 286

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G+  + G +  ++G++ MD  M D++  +  ++GDYI ++ PDI  +  A    
Sbjct: 287 ------GEVLVNGKIAKVVGRVCMDQIMIDVS-GIDCKIGDYITLY-PDIYKE--ANKIH 336

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+L+  I  R  + Y
Sbjct: 337 TIAYELMTSISNRVPRIY 354


>gi|296453703|ref|YP_003660846.1| alanine racemase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183134|gb|ADH00016.1| alanine racemase [Bifidobacterium longum subsp. longum JDM301]
          Length = 452

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 47/283 (16%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADDPS--S 172
           ++VD+GF R G        FT   F+  L +L  +            SHLA AD P    
Sbjct: 157 VKVDSGFGRNG--------FTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADSPDVPE 208

Query: 173 HVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
            V+S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LYG    
Sbjct: 209 FVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLYGYEPD 268

Query: 226 INKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                P    +T     +A++  ++   AG  +SYG       ++  A+  +GYADG   
Sbjct: 269 PAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYADGIHR 328

Query: 282 TLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSIEVGDY 333
           + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +  GD 
Sbjct: 329 SASGFDMEGAKHVEKPGGPLRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGVHEGDT 388

Query: 334 IQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 389 VELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|294814274|ref|ZP_06772917.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064]
 gi|294326873|gb|EFG08516.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064]
          Length = 352

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 144/359 (40%), Gaps = 35/359 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH +E   + +DL A+++N   +  +   A   AVVK NAYG G   +A A   AG +  
Sbjct: 1   MHRSE---ITLDLDAVRHNARQLIKMVDGAELWAVVKGNAYGHGAVPVAGAALEAGARAL 57

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V ++ EG+ LR   P+ARI VL  + PG         L  V      L   S  +    
Sbjct: 58  CVATLGEGLALRERFPRARIVVLGPVGPGSVPAASRAGLECVAHDDASLEALSGAVE--- 114

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              Y ++V+ G NR G       D          GQ S     L         V ++QL 
Sbjct: 115 ---YHIKVNLGLNRYG--FDRIPDRLREQPVGVFGQFSHAHVDL--------EVTALQLA 161

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVVTA 238
           RF             + +SS  L  P       R G +L G +   N S   P++  ++ 
Sbjct: 162 RFLEQCEAVPRATRHVCNSSAALSLPAARLDAVRSGSALLGVSLMTNPSSRLPLRPALSW 221

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +  +R   AG  V Y G  ++TR ++  V  +GY DG+   L G       +V +G 
Sbjct: 222 ISCLAQVRNLPAGAAVGYEGAHRVTRPTVTGVVPVGYGDGFVSRLVGT------TVLVGD 275

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           +         ++G ++MD     +     I  G  + + G  + ++     +   N++L
Sbjct: 276 EPAT------VIGSVSMDALTVALPRRFPI--GTPVTLIGDGLPMESHLRFASMANWEL 326


>gi|302337568|ref|YP_003802774.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
 gi|301634753|gb|ADK80180.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
          Length = 402

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 156/383 (40%), Gaps = 39/383 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLG---CEKIAPAL--YNAGVQDFFVTS 64
           ++DL  L  N  ++   SG      ++K NAYG G   C K+A  L     GV  +    
Sbjct: 16  EVDLDLLSKNIRTLWNRSGCEGYLLLLKANAYGHGSIACAKMAEELGVTFGGVAAYQEVR 75

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHP 123
                 +RL            I P      FD ++   +SS+      +++    G    
Sbjct: 76  FLRSAGVRLPLLLLEDLFDDEIAPA-----FDADVSFSVSSLAYAEKVARVAEKAGKVGK 130

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L VDTG  RLG    E +       + +   L  + SH   +D+    V + Q+E F 
Sbjct: 131 VHLNVDTGMGRLGCFPDELMKVAGYVHHSRWLALEGLFSHFPSSDEGDLSVPTAQIELFS 190

Query: 184 TLISHYK--GIEAS---LASSSGILLGPNYH-FQLTRPGISLYG--GTDKINKSHPMQTV 235
            L    +  GI       A+S  ++  P    F + RPG+S +G   + ++     +  V
Sbjct: 191 RLDRELEAAGIRPKWRHFANSGAVIDFPAASSFDMIRPGVSSFGIYPSKEVTHDVGLFRV 250

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++ I+ IR    G  + YG      R+S IAV  IGY DGY    S           
Sbjct: 251 LSLKSAILSIRTFPKGAKIGYGSTFVTERESRIAVVPIGYGDGYVRAFSN---------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGP--------DIKLDDV 346
                 + G  VP++G+I+MDM   D+TD   S+  GD   + G         +I  +D+
Sbjct: 301 -NSDVLVHGRRVPVVGRISMDMITVDLTDLPESVATGDEAVLVGEQAWEDRSGEIDAEDL 359

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A   GT +Y++   +  R  + +
Sbjct: 360 AARIGTISYEVTCLLTARVPRVF 382


>gi|317402544|gb|EFV83110.1| alanine racemase [Achromobacter xylosoxidans C54]
          Length = 386

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 164/384 (42%), Gaps = 56/384 (14%)

Query: 7   LRLKIDLTALKNNWHSMNAL---SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           L  ++D +A+ +N   + A    S   R  A VK +AYG G  ++ PAL +A      V 
Sbjct: 23  LHARVDASAVAHNLVRLRAALPDSDAPRLWATVKADAYGHGLARVLPALRDA--DGLAVL 80

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSH 122
            ++E    R       + V  G++   + ++ DT +L  VI+   QL + ++        
Sbjct: 81  HLDEARACRQLGWNGPVLVYGGLYSPADTLLLDTPDLHLVITHAAQLQWLAQ-------- 132

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSF-----------NKKLGQLSLI-----ISHLAC 166
                      R  + L+ A D  H  F            +KL    L+     ++H A 
Sbjct: 133 ------SPARERPAIWLRFAGDIHHTGFCADDYRAAFEQARKLAARGLVSEIGHLNHYAR 186

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL--LGPNYHFQLTRPGISLYGGT- 223
           AD+ +  V       FR ++    G   S ++S+ +L   G     Q  RPG++LYG + 
Sbjct: 187 ADE-ADGVGQAD-ACFREVVRGLPG-PVSTSNSAAVLGHAGLAAGTQWVRPGLALYGASP 243

Query: 224 --DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
             D+      ++  ++  ++++ I++  AG  V Y G         + +   GYADGYP 
Sbjct: 244 FADRSAAQLALRPAMSLHSQVVGIQRVRAGAGVGYSGAFVAPATMDVGIVTCGYADGYP- 302

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
                   H+P+   G    + G    +LG+++MDM   D+       +G  + ++G D 
Sbjct: 303 -------RHAPT---GTPVMVAGVRTRLLGRVSMDMMAVDLDPIPQAAIGSPVTLWGADG 352

Query: 341 IKLDDVALASGTTNYDLLVRIGTR 364
             +++VA+A+GT    LL  +  R
Sbjct: 353 PPVEEVAMAAGTIAAQLLTGLSAR 376


>gi|148997751|ref|ZP_01825315.1| alanine racemase [Streptococcus pneumoniae SP11-BS70]
 gi|168575112|ref|ZP_02721075.1| alanine racemase [Streptococcus pneumoniae MLV-016]
 gi|307068325|ref|YP_003877291.1| alanine racemase [Streptococcus pneumoniae AP200]
 gi|147756250|gb|EDK63292.1| alanine racemase [Streptococcus pneumoniae SP11-BS70]
 gi|183578867|gb|EDT99395.1| alanine racemase [Streptococcus pneumoniae MLV-016]
 gi|306409862|gb|ADM85289.1| Alanine racemase [Streptococcus pneumoniae AP200]
          Length = 367

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 168/381 (44%), Gaps = 43/381 (11%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ I L A++ N   M   +       AVVK NAYG G   +A A+ +  V  F V++++
Sbjct: 10  KVLIHLGAIRQNIQQMGTHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNID 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           E ++LR       I +L G+   +   +   +D  L     +V  L +   L+   V   
Sbjct: 69  EAIELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLT 122

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLE
Sbjct: 123 GLTVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLE 182

Query: 181 RFRTLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPM 232
           RF+T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +
Sbjct: 183 RFKTILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         
Sbjct: 240 IPALTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
           SV + G+        PI+G+++MD     +     +  G  + + G     +I    VA 
Sbjct: 294 SVLVDGQA------CPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVAT 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY+++  +  R  + Y
Sbjct: 346 YRVTINYEVVCLLSDRIPREY 366


>gi|15901532|ref|NP_346136.1| alanine racemase [Streptococcus pneumoniae TIGR4]
 gi|111657514|ref|ZP_01408257.1| hypothetical protein SpneT_02001280 [Streptococcus pneumoniae
           TIGR4]
 gi|116515765|ref|YP_816964.1| alanine racemase [Streptococcus pneumoniae D39]
 gi|221232432|ref|YP_002511585.1| alanine racemase [Streptococcus pneumoniae ATCC 700669]
 gi|225855126|ref|YP_002736638.1| alanine racemase [Streptococcus pneumoniae JJA]
 gi|225857311|ref|YP_002738822.1| alanine racemase [Streptococcus pneumoniae P1031]
 gi|298229862|ref|ZP_06963543.1| alanine racemase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255738|ref|ZP_06979324.1| alanine racemase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503442|ref|YP_003725382.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A]
 gi|303254308|ref|ZP_07340416.1| alanine racemase [Streptococcus pneumoniae BS455]
 gi|61218406|sp|P0A2W8|ALR_STRPN RecName: Full=Alanine racemase
 gi|61218407|sp|P0A2W9|ALR_STRR6 RecName: Full=Alanine racemase
 gi|122278190|sp|Q04J74|ALR_STRP2 RecName: Full=Alanine racemase
 gi|254802389|sp|B8ZMG1|ALR_STRPJ RecName: Full=Alanine racemase
 gi|254802391|sp|C1CFR7|ALR_STRZJ RecName: Full=Alanine racemase
 gi|254802392|sp|C1CM34|ALR_STRZP RecName: Full=Alanine racemase
 gi|5759209|gb|AAD51027.1|AF171873_1 alanine racemase [Streptococcus pneumoniae]
 gi|14973192|gb|AAK75776.1| alanine racemase [Streptococcus pneumoniae TIGR4]
 gi|116076341|gb|ABJ54061.1| alanine racemase [Streptococcus pneumoniae D39]
 gi|220674893|emb|CAR69468.1| alanine racemase [Streptococcus pneumoniae ATCC 700669]
 gi|225723137|gb|ACO18990.1| alanine racemase [Streptococcus pneumoniae JJA]
 gi|225725718|gb|ACO21570.1| alanine racemase [Streptococcus pneumoniae P1031]
 gi|298239037|gb|ADI70168.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A]
 gi|302598659|gb|EFL65697.1| alanine racemase [Streptococcus pneumoniae BS455]
          Length = 367

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 166/378 (43%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 72  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF+
Sbjct: 126 VHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERFK 185

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 186 TILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 243 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 297 VDGQA------CPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRV 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 349 TINYEVVCLLSDRIPREY 366


>gi|15903583|ref|NP_359133.1| alanine racemase [Streptococcus pneumoniae R6]
 gi|15459204|gb|AAL00344.1| Alanine racemase [Streptococcus pneumoniae R6]
          Length = 374

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 166/378 (43%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 20  IHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 78

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 79  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 132

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF+
Sbjct: 133 VHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERFK 192

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 193 TILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 250 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 303

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 304 VDGQA------CPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRV 355

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 356 TINYEVVCLLSDRIPREY 373


>gi|315148009|gb|EFT92025.1| alanine racemase [Enterococcus faecalis TX4244]
          Length = 371

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 37/380 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++   + P   
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 126 -LQVDTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            L+VDTG  R+G       ++A+ F  +H  F         I +H + AD+  +     Q
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEF-----LWEGIFTHFSTADEIDTSYFEKQ 184

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQ 233
             RF+ +++  + +     +++S+  L  P+    + R G+++YG     +K+  S+ ++
Sbjct: 185 SGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYGLK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I +++  AGE + YG       +  I    IGYADG+   L G       +
Sbjct: 245 PALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF------T 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALA 349
           V + GK         I+G++ MD  M  + +   + VG  + + G D   ++    VA  
Sbjct: 299 VLVNGK------RCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEK 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++      R  + Y
Sbjct: 351 LETIHYEVACTFSQRIPREY 370


>gi|116333170|ref|YP_794697.1| alanine racemase [Lactobacillus brevis ATCC 367]
 gi|122270141|sp|Q03T06|ALR_LACBA RecName: Full=Alanine racemase
 gi|116098517|gb|ABJ63666.1| alanine racemase [Lactobacillus brevis ATCC 367]
          Length = 373

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 161/384 (41%), Gaps = 44/384 (11%)

Query: 8   RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +L ID  AL +N  + +  L+       VVK N YG G  ++A     AG   F V  ++
Sbjct: 10  QLVIDRQALHDNIQAEVTRLASGCELFMVVKANGYGHGAVQVAQVAKEAGATGFCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
           E ++LR       I VL    P    ++   ++   +++   L      ++  ++ P A 
Sbjct: 70  EALELRAAGFNEPILVLGVTEPEDAPLMAQQHISATVAATDWLVAADAYLA--LAQPTAP 127

Query: 126 LQV----DTGFNRLGL----SLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVN 175
           LQV    DTG  R+G      L  A+ +  TH + N        I +H A AD P     
Sbjct: 128 LQVHLGLDTGMGRIGFKTTTELTTAVSYLATHATLN-----FEGIFTHFATADSPDETYF 182

Query: 176 SVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKS 229
             Q+ +++TL +  K       +++S+  L     +  + R G++ YG    GT  I   
Sbjct: 183 KQQVAKWQTLTAALKERPRYVHVSNSATSLWHAACNDNMVRFGVAGYGLNPSGT-AIPAP 241

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           + ++  ++  ++++  ++ +AGE V YG      +   +    IGYADGY   L G    
Sbjct: 242 YALKPALSLTSQLVHSKQVVAGESVGYGATYTAQQTEWVGTVPIGYADGYERRLQGFHV- 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       + G    I+G++ MD  M  +    +   G  + + G D    I L +
Sbjct: 301 -----------LVDGQACEIIGRVCMDQLMIRLPHDYA--RGTRVTLIGRDGDHVITLQE 347

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T +Y+L     +R  + Y
Sbjct: 348 MADYCQTIHYELACGFTSRLPRVY 371


>gi|260558409|ref|ZP_05830605.1| alanine racemase [Enterococcus faecium C68]
 gi|260075583|gb|EEW63889.1| alanine racemase [Enterococcus faecium C68]
          Length = 373

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 33/352 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK N YG G  + A A    G   F V++++EGV+LR       I +L  +      +
Sbjct: 37  AVVKANGYGHGAIETAEAAVAGGASGFCVSNLDEGVELREAGFTQPILILNMVPYDALTV 96

Query: 94  IFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA--LQVDTGFNRLGL----SLQEALDFT 146
               +L     +   L   + ++    +  P +  L+ DTG  R+G      ++EA  F 
Sbjct: 97  AVAHDLSVTAGTREWLQAAAAVLEKSKLETPLSIHLKADTGMGRIGFCTPEEVKEAAAFI 156

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILL 204
             S   ++ +   + +H + AD       ++Q ERF  ++     +     +++S+  L 
Sbjct: 157 KES---RVLEWEGLFTHFSTADQADDTYWNLQKERFIEVLKKLPELPRYVHVSNSATALW 213

Query: 205 GPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
                  + R G+++YG       + + +P+Q  +   + +I I+K  AGE + YG    
Sbjct: 214 HDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSELIQIKKLPAGEGIGYGETYI 273

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
            +    I    IGYADG+P  + G                ++G     +G++ MD  M  
Sbjct: 274 TSEAEWIGTIPIGYADGWPRKMQGFSL------------LVEGNYCETIGRVCMDQLMIR 321

Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +       VG  + + G     +I + D+A   GT +Y++   +G R  + Y
Sbjct: 322 LPQEFP--VGTKVTLIGKNADKEITMQDIADQLGTIHYEVACGLGQRIPREY 371


>gi|296128394|ref|YP_003635644.1| alanine racemase [Cellulomonas flavigena DSM 20109]
 gi|296020209|gb|ADG73445.1| alanine racemase [Cellulomonas flavigena DSM 20109]
          Length = 394

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 164/385 (42%), Gaps = 44/385 (11%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +   L +++D  A     H+   L+ +AR   AVVK + +GLG   +A      G     
Sbjct: 19  TRPVLTVRLDAVA-----HNARVLAASARRLMAVVKADGFGLGAADVARTALAHGADALG 73

Query: 62  VTSVEEGVKLRLYTPQARI---FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           V ++ E V+LR     ARI    + +   PG +  + D  L  +  +VP L      +S 
Sbjct: 74  VATLAEAVELR----TARIGAPLLSWLDAPGAD--LSDAVLHGIDVAVPSLAHLEAAVSA 127

Query: 119 GVSHPYALQV----DTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPS 171
           G      + V    D G  R G   +        ++  +L    ++  ++ HLACA    
Sbjct: 128 GRRTGRGVDVHLYLDCGTARDGCPPETWPALCAAAWRAELAGAVRVVGVMGHLACAASLD 187

Query: 172 SHVNSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
              N+    RF   ++  +  G+      L +++ +L  P   F L+R G  L G  D  
Sbjct: 188 PEANTDATARFAHGVARARAAGLRPRVRHLGATAAVLGLPTTRFDLSRVGAGLVG-IDPT 246

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            +   ++      A ++ +R   A   V Y    + +  + +A+  +GYADG P+T SG 
Sbjct: 247 GRYPVLRAAAQVTAPVVQVRDVGADVGVGYDHTYRTSAPTRLALLPLGYADGLPVTASGR 306

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF--GPDIK-- 342
                       +  + G   P+ G+++MD  + D+ D L++  GD + +   G D+   
Sbjct: 307 -----------AEVLVHGRRRPLAGRVSMDQVVVDVGD-LAVRTGDVVTVIGTGEDLAPT 354

Query: 343 LDDVALASGTTNYDLLVRIGTRYAK 367
           L + A  +GT  ++LL  +G R  +
Sbjct: 355 LTEWAGWAGTLPHELLTGLGRRLVR 379


>gi|227431451|ref|ZP_03913500.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352817|gb|EEJ42994.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 370

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 159/369 (43%), Gaps = 41/369 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL++  +A+++N  ++  +SG  +    VK NAYG G   +A A    G+    V  ++E
Sbjct: 10  RLEVSKSAVEHNITTVKNVSGADKVFLTVKSNAYGFGLIPMAQAAVAGGIYGLGVAVLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL---MSCGVSHPY 124
            + LR     A I +L GI   Q K +    +  ++++V  L +  K    ++     P 
Sbjct: 70  AIALRHERITAPILIL-GI--SQVKYVELMAVQHIMATVVSLDWLEKAEHQLTGEQRLPV 126

Query: 125 ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            L +DTG  R+G     +L +A+ F  +  +K   +   + +H A +D   +    +QL 
Sbjct: 127 TLGIDTGMGRIGFRDRETLAKAIQFVLDHADKF--EYVGLSTHFAESDSSDTRYFQMQLT 184

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYG---GTDKINKSHPM 232
           R+  L       +    ++SG  +   YH      ++ R G  LYG      ++     +
Sbjct: 185 RWHQLTDDLPKPKYYHVANSGAAM---YHAEEIPHEVVRVGTVLYGIEPSRGELADGRNL 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+   + +  +++  AGE +SY  Q   T++  I    IGY DG+   L G       
Sbjct: 242 KPVMALRSEVNFVKRLPAGESISYSHQYTTTQNEWIGTVPIGYGDGWLRKLMGF------ 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL----DDVAL 348
                 K  I G   PI+G++ MD  M  +        G  +   G D  L    +DVA 
Sbjct: 296 ------KVIIDGQYAPIVGQVAMDQLMIRLPREYP--EGTTVTFIGQDGDLENTIEDVAQ 347

Query: 349 ASGTTNYDL 357
            +G   +++
Sbjct: 348 FAGLAPWEI 356


>gi|315221233|ref|ZP_07863156.1| alanine racemase [Streptococcus anginosus F0211]
 gi|315189592|gb|EFU23284.1| alanine racemase [Streptococcus anginosus F0211]
          Length = 368

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 159/379 (41%), Gaps = 45/379 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEG 68
           +DL A+  N   + A +  +    AVVK +AYG G   +A   Y   + D F V++++E 
Sbjct: 13  VDLAAISFNIKQIAAHIPNDVEKWAVVKADAYGHGA--VAVTRYIESIVDGFCVSNIDEA 70

Query: 69  VKLRLYTPQARIFVL-----YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--- 120
           V+LR      +I VL     + I    E+         V  +V  L +   L+   +   
Sbjct: 71  VELRDAGITKKILVLGVSDVHAISLAIER--------KVTCTVASLEWIDLLLKSNIDVA 122

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           S    +++D+G  R+G    Q+A +  H    K   Q+  I +H A AD+  +H    QL
Sbjct: 123 SLVVHIKIDSGMGRIGFRDSQDAQEAIHR-LEKAGAQVEGIFTHFATADEADTHKFEAQL 181

Query: 180 ERFRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQT 234
            RF+ ++   + +   +  ++S+  L       +  R G  +YG       +   + M+ 
Sbjct: 182 ARFKEILEQLETVPPIVHASNSATTLWHAETVMKAVRLGDIIYGLNPSGRTLQLPYEMKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  + ++ +++  AG  V YG          I    +GYADG+   + G +       
Sbjct: 242 ALSLVSELVHVKQLEAGADVGYGATYTSENSQYIGTIPLGYADGWTRDMQGFNV------ 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
                  I G   PI+G+++MD     +  +  I  G  +   G      I   DVA   
Sbjct: 296 ------LIDGQPCPIVGRVSMDQITVRLPKAYPI--GTPVVFIGESSKKSISATDVAEKR 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++  I  R  + Y
Sbjct: 348 GTINYEVVCLISDRVPRVY 366


>gi|323127979|gb|ADX25276.1| alanine racemase [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 366

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 156/372 (41%), Gaps = 29/372 (7%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A+K N  S+   +    +T AVVK +AYG G  +++ AL    V  + V++++E 
Sbjct: 12  RVNLQAIKENVASVQENIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCVSNLDEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       I +L  + P + ++     +   ++S+  L    +           +++
Sbjct: 71  LQLRQAGIDKEILILGVLLPNELELAITRQVTVTVASLEWLAMAKQEWPDLKGLKVHIKI 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G  R+GL     +D           ++  I +H A AD+  +     QL  F  L+  
Sbjct: 131 DSGMGRIGLRSVTEVDNLIAGLKSMGAEVEGIFTHFATADEADTVKFEQQLTFFTNLVDQ 190

Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEAR 241
                  + AS +++S  L      F   R GI +YG      ++    P++     E+ 
Sbjct: 191 LADKPSLVHASNSATS--LWHSETIFNAVRLGIVMYGLNPSGSELALPFPLKEAFNLESV 248

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ +++   GE V YG   K      +    IGYADG+   + G                
Sbjct: 249 LVHVKEIAPGETVGYGATYKAQTSEYVGTVPIGYADGWTRDMQGFTV------------L 296

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           ++     I+G+++MD     +  +  +  G  + + G D    I   D+A    T NY++
Sbjct: 297 VERQPCEIIGRVSMDQMTIRLPRAYPL--GTKVTLIGQDQEKVISTTDIANYRNTINYEV 354

Query: 358 LVRIGTRYAKFY 369
           L  +  R  + Y
Sbjct: 355 LCLLSDRVPRVY 366


>gi|332201121|gb|EGJ15192.1| alanine racemase [Streptococcus pneumoniae GA47901]
          Length = 367

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 165/378 (43%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVVK NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 72  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF+
Sbjct: 126 VHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERFK 185

Query: 184 TLISHYK-GIEASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K   E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 186 TILASMKEAPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 243 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 297 VDGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRV 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 349 TINYEVVCLLSDRIPREY 366


>gi|149001990|ref|ZP_01826944.1| alanine racemase [Streptococcus pneumoniae SP14-BS69]
 gi|237649236|ref|ZP_04523488.1| alanine racemase [Streptococcus pneumoniae CCRI 1974]
 gi|237821996|ref|ZP_04597841.1| alanine racemase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147759799|gb|EDK66789.1| alanine racemase [Streptococcus pneumoniae SP14-BS69]
 gi|332074034|gb|EGI84512.1| alanine racemase [Streptococcus pneumoniae GA41301]
          Length = 367

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 167/381 (43%), Gaps = 43/381 (11%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ I L A++ N   M   +       AVVK NAYG G   +A A+ +  V  F V++++
Sbjct: 10  KVLIHLGAIRQNIQQMGTHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCVSNID 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           E ++LR       I +L G+   +   +   +D  L     +V  L +   L+   V   
Sbjct: 69  EAIELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLT 122

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L++D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLE
Sbjct: 123 GLTVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLE 182

Query: 181 RFRTLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPM 232
           RF+T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +
Sbjct: 183 RFKTILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         
Sbjct: 240 IPALTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
           SV + G+        PI+G+++MD     +     +  G  + + G     +I    VA 
Sbjct: 294 SVLVDGQA------CPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVAT 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY+++  +  R  + Y
Sbjct: 346 YRVTINYEVVCLLSDRIPREY 366


>gi|331701928|ref|YP_004398887.1| alanine racemase [Lactobacillus buchneri NRRL B-30929]
 gi|329129271|gb|AEB73824.1| Alanine racemase [Lactobacillus buchneri NRRL B-30929]
          Length = 374

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 148/382 (38%), Gaps = 38/382 (9%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ +DL A+ +N  H+   L        VVK + YG G  ++A     AG   F V  ++
Sbjct: 10  QVTVDLAAIYSNIHHAKQRLDDGDDLFQVVKADGYGHGAVQVAEIAEKAGATGFCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---P 123
           E ++LR    +  + VL    P   ++    N+   + S+  L   +KL+          
Sbjct: 70  EALQLRQAGIRLPVLVLGITDPECAQLAASENISLTVGSIDWLNQAAKLLDTSAFKGRLN 129

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLER 181
             L +DTG  R+G    + L       N    ++S   I +H A AD P       Q + 
Sbjct: 130 IHLALDTGMGRIGFQTADELKAAVGVLNAHSDRMSFEGIFTHFATADSPDDTYFKFQYQN 189

Query: 182 FRTLIS------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHP 231
           F+  ++       Y  +  S  S    + G N    + R GI+ YG    G D     + 
Sbjct: 190 FQDFMAVLDKRPKYVHVANSATSLWHKVCGGN----MIRFGIAAYGLNPSGRDITQLPYQ 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + I   +    G  + YG       D  I    +GYADG P  + G      
Sbjct: 246 LKPGLSVTSEIDFSKLVKKGRSIGYGATYTTDSDQWIGTVPVGYADGIPRAMQGFSV--- 302

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
                     + G+  PI+G++ MD  M  +        G  + I G      I  DDVA
Sbjct: 303 ---------LVDGHKCPIVGRVCMDQFMIRLPHDYP--YGTTVTIIGQSGDAQITADDVA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y+++  +  R  + Y
Sbjct: 352 DYLHTISYEVICGLSPRLRRKY 373


>gi|251799573|ref|YP_003014304.1| alanine racemase [Paenibacillus sp. JDR-2]
 gi|247547199|gb|ACT04218.1| alanine racemase [Paenibacillus sp. JDR-2]
          Length = 389

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 150/377 (39%), Gaps = 36/377 (9%)

Query: 10  KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I L+ ++ N  ++  +L  + +  AVVK N YG G  + A A   AG     V  +EE 
Sbjct: 8   EISLSRIRENMLNIRRSLPVSVKLMAVVKANGYGHGDIESAKAAMRAGADYLAVAYLEEA 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
           ++LR    +  I VL  I P   ++    +L   ++S    +       C        ++
Sbjct: 68  IRLRDAGLKLPILVLTPIRPELVQLALRHDLSLTVTSAKWFSEMRIFKPCPAGKLRVHVK 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-- 185
           +DTG  R+G+  +E  D        +   +    +H A A    +     Q  RF  +  
Sbjct: 128 MDTGLGRIGIRTKEEWDELVPWLQAEDVDVDGFYTHFATAGQEDTGFLEQQTARFLDMKE 187

Query: 186 --------ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSHPMQTVV 236
                   I HY       A S   L  P+    + R G ++YG    K+     ++  +
Sbjct: 188 WTRASGLAIRHY-----HCAGSVAALRFPHLAMDMVRIGAAMYGFYPAKLACPVKLEPAL 242

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  +R+I ++K + GE + Y    +   +  I    IGYADG+   + G D         
Sbjct: 243 SLHSRLIQVKKLVKGEYIGYDNSYRAEEEEWIGTVPIGYADGWAQRMQGTDV-------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                I G+  PI GKI MD  M  +    +   G  + + G      I   ++A+  G+
Sbjct: 295 ----LIGGHRTPIAGKICMDQLMIKLPGPCA--EGTPVTLIGTQGGQRITFAELAVHIGS 348

Query: 353 TNYDLLVRIGTRYAKFY 369
              ++   +G R  + Y
Sbjct: 349 VAQEVSTSLGGRITRTY 365


>gi|297205120|ref|ZP_06922516.1| alanine racemase [Lactobacillus jensenii JV-V16]
 gi|297149698|gb|EFH29995.1| alanine racemase [Lactobacillus jensenii JV-V16]
          Length = 375

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 156/383 (40%), Gaps = 40/383 (10%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +++DL A+K N  +  A L    +  AVVK NAYG G  K+A      G   F V  ++
Sbjct: 10  EVEVDLLAIKKNLQAEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGADGFCVAVLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSH 122
           E  +LR  +    I VL G+ P  E  I   + I +  + P L +       L    +  
Sbjct: 70  EAFELRDASIVDPILVL-GVTPANEACIAAAHNISL--TAPSLEWLKAADMALAKKDMVL 126

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
              L +D+G  R+G S  +      N F +      +  + +H A AD   S     Q++
Sbjct: 127 KIHLAIDSGMGRIGFSEDQEF-IAANEFLRNSTHFIVEGMFTHFASADSADSSYFDYQIK 185

Query: 181 RF---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP------ 231
           RF   + L+S  K     +A+++  +     H  + R GI LYG     N + P      
Sbjct: 186 RFNHLKNLLS-IKPKWIHVANTASSIFDKQIHSDIVRFGIGLYGLNPSSNPASPDLESKI 244

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++  + +  ++K  +G  + YG       D  I    +GYADG    LSG     
Sbjct: 245 TLKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGIIRKLSGF---- 300

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDV 346
                   K  +     PI+G+I MD  M  + + +   VG  + I+    +    +   
Sbjct: 301 --------KIKVGDNFCPIVGRICMDQLMVLLPEKMP--VGTKVVIYSNKTEDPNSIKKA 350

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T +Y+L   +  R  + Y
Sbjct: 351 ADYVDTIHYELACLLSDRLPRIY 373


>gi|284043349|ref|YP_003393689.1| alanine racemase [Conexibacter woesei DSM 14684]
 gi|283947570|gb|ADB50314.1| alanine racemase [Conexibacter woesei DSM 14684]
          Length = 392

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 160/378 (42%), Gaps = 30/378 (7%)

Query: 10  KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++L A++ N   +   +  +    A VK N YG G  + A A    G     V +  E 
Sbjct: 20  RVNLAAIERNCALIRREIGADVALCAAVKANGYGHGAVQSARAAVAGGATWLAVATGGEA 79

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHP-- 123
            +LR     AR+ VL  + P +  E +  D +++      V QL   +   +   + P  
Sbjct: 80  AELRAARLDARLIVLGALAPEELDEALDADADVVAWNERFVEQLATAAGARAAATAAPPI 139

Query: 124 -YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLER 181
              L++D G  RLG    + L    +      G +L+  ++H  CAD+  +     QL  
Sbjct: 140 RVHLKLDVGMGRLGTRDADELLRVADRVAAAPGLELAGAMTHFPCADEDVALTRG-QLAA 198

Query: 182 F----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTV 235
           F      L + + G+    A+S+  L  P     L R GI++YG +  +    +H ++  
Sbjct: 199 FTAFGERLRAAHPGVLLHAANSAAALALPESRLDLVRCGIAVYGLSPWEDDATAHGLEPA 258

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   + +  ++   AGE V YG + +    + IA   IGY DG      G + +      
Sbjct: 259 LELRSWVAALKPLAAGETVGYGARFRAQAPTWIATLPIGYGDG---VRRGWERD------ 309

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             G   + G   P++G+++MD    D+     + +GD   + G      +  ++VA   G
Sbjct: 310 --GVALLGGRRRPLVGRVSMDNVTVDVGPEPGVALGDPAILIGAAGEERLTAEEVARRLG 367

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 368 TINYEVVTALSARVVRAY 385


>gi|256852008|ref|ZP_05557395.1| alanine racemase [Lactobacillus jensenii 27-2-CHN]
 gi|260661423|ref|ZP_05862336.1| alanine racemase [Lactobacillus jensenii 115-3-CHN]
 gi|282931888|ref|ZP_06337367.1| alanine racemase [Lactobacillus jensenii 208-1]
 gi|256615420|gb|EEU20610.1| alanine racemase [Lactobacillus jensenii 27-2-CHN]
 gi|260547878|gb|EEX23855.1| alanine racemase [Lactobacillus jensenii 115-3-CHN]
 gi|281303999|gb|EFA96122.1| alanine racemase [Lactobacillus jensenii 208-1]
          Length = 375

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 156/383 (40%), Gaps = 40/383 (10%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +++DL A+K N  +  A L    +  AVVK NAYG G  K+A      G   F V  ++
Sbjct: 10  EVEVDLLAIKKNLQAEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGADGFCVAVLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSH 122
           E  +LR  +    I VL G+ P  E  I   + I +  + P L +       L    +  
Sbjct: 70  EAFELRDASIVDPILVL-GVTPANEACIAAAHNISL--TAPSLEWLKAADMALAKKDMVL 126

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
              L +D+G  R+G S  +      N F +      +  + +H A AD   S     Q++
Sbjct: 127 KIHLAIDSGMGRIGFSEDQEF-IAANEFLRNSTHFIVEGMFTHFASADSADSSYFDYQVK 185

Query: 181 RF---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP------ 231
           RF   + L+S  K     +A+++  +     H  + R GI LYG     N + P      
Sbjct: 186 RFNHLKNLLS-IKPKWIHVANTASSIFDKQIHSDIVRFGIGLYGLNPSSNPASPDLESKI 244

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++  + +  ++K  +G  + YG       D  I    +GYADG    LSG     
Sbjct: 245 TLKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGIIRKLSGF---- 300

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDV 346
                   K  +     PI+G+I MD  M  + + +   VG  + I+    +    +   
Sbjct: 301 --------KIKVGDNFCPIVGRICMDQLMVLLPEKMP--VGTKVVIYSNKTEDPNSIKKA 350

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T +Y+L   +  R  + Y
Sbjct: 351 ADYVDTIHYELACLLSDRLPRIY 373


>gi|332798388|ref|YP_004459887.1| alanine racemase [Tepidanaerobacter sp. Re1]
 gi|332696123|gb|AEE90580.1| Alanine racemase [Tepidanaerobacter sp. Re1]
          Length = 380

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 154/346 (44%), Gaps = 35/346 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L  + +N +++  L GN    AVVK NAY     +++  +   G     V  +EEG
Sbjct: 10  LEINLDTIASNTNNIKRLIGNKELMAVVKGNAYTHDMIEVSKTVLKNGASRLGVGRLEEG 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS---SVPQLTFYSKLMSCGVSHPYA 125
           + LR     A I  +     GQE+ I   ++   +    +V +L+  +  M+   S    
Sbjct: 70  IYLRKAGITAPILNMCLNMEGQEREIVKYDIAQTVCDLDTVHRLSCEAAKMN--KSAKIH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG  R+G+  ++AL+F       +  ++  + +H A   D      S QL+ F ++
Sbjct: 128 VKIDTGMGRIGIFPEDALNFISEVSAMQNIEIEGVYTHFATPHD--KEFMSYQLKLFSSV 185

Query: 186 IS--HYKGIEASL---ASSSGILLGPN--YHFQLTRPGISLYG------GTDKINKSHPM 232
           +   + +G    L   ASS   +  P+    F + R G  +YG        DKI K +  
Sbjct: 186 LKRLNQEGYSIPLKHCASSEAFVAMPDTWEKFDMVRIGDLIYGVYNSEEEKDKI-KVNFA 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           QT  T    I+ ++K      + Y       +D++IA    GY DGY    S        
Sbjct: 245 QTFKTT---IVFLKKLGPNTSIGYDRTYITDKDTIIATLPAGYNDGYTKLYSN------- 294

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                G   ++G   P++G++  D  M D+T+    +VGD + ++G
Sbjct: 295 ----NGIVLVRGKKAPVVGRVCADQMMIDVTNIQDAKVGDEVVLWG 336


>gi|152990104|ref|YP_001355826.1| alanine racemase [Nitratiruptor sp. SB155-2]
 gi|226711055|sp|A6Q1W0|ALR_NITSB RecName: Full=Alanine racemase
 gi|151421965|dbj|BAF69469.1| alanine racemase [Nitratiruptor sp. SB155-2]
          Length = 332

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 160/364 (43%), Gaps = 56/364 (15%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K+   ALK+N  +++  +G + + AAV+KDNAYG G E  A  +   G++   V + EE
Sbjct: 4   VKLSEKALKHNLETVSKKAGGSDKIAAVLKDNAYGHGIEGFAKKISRLGIKKAVVRTYEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            +K+  + P   I      H      I D + + V+    ++                L+
Sbjct: 64  ALKIADFFPYILILSDTPRHDSFHYAINDLDTLQVLEPGTKVH---------------LK 108

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +R G++L+E ++       K    L+ + +H   AD+ SS +   Q E+++T+  
Sbjct: 109 IDTGMHRNGIALEE-IEKAFELLQKNRAHLTGVFTHFRSADELSSEL-FWQNEQWQTVKQ 166

Query: 188 HY------KGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVT 237
           H         ++  L  A++S  L          R GI+LYG T  D + +   ++ V +
Sbjct: 167 HVIELIKKYNLQKPLFHAANSAALFRLGCEDDFARIGIALYGYTELDDLYEPPALEPVAS 226

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A+ I  R+   G  V YGG  +   D +I+    GYADG               +F  
Sbjct: 227 LWAQKIASRELKKGSRVGYGGVFEAREDMIISTYDAGYADG---------------IFRF 271

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
            K    G    ILG+++MD  + +            I IF    K+   A   GT +Y+L
Sbjct: 272 QKEIEDG---KILGRVSMDSILLEGEKK-------EICIFSDAKKM---ARKLGTISYEL 318

Query: 358 LVRI 361
           LV++
Sbjct: 319 LVKM 322


>gi|257069444|ref|YP_003155699.1| alanine racemase [Brachybacterium faecium DSM 4810]
 gi|256560262|gb|ACU86109.1| alanine racemase [Brachybacterium faecium DSM 4810]
          Length = 390

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 157/382 (41%), Gaps = 39/382 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ID +A+  N  +M  L    +TA  AVVK + YG G    A A    G     V      
Sbjct: 19  IDPSAITENTRAMGTLL-EEQTALMAVVKADGYGHGMLTAARAAIEGGATWLGVAHPASA 77

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA--- 125
           + L      A+I   +   P   +I+    L  V++S   ++  S  M   VS       
Sbjct: 78  LALARADLDAQILT-WLFEPHTARIV----LPEVLASGVDVSVGSPEMLALVSEAARQAD 132

Query: 126 ------LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 L++DTG  R G+   +  +           Q +   +HL  ADDPS      Q+
Sbjct: 133 RRARVHLKIDTGMGRNGVLPWQIREMGATLREDDFLQATGAWTHLTSADDPSDPATDQQV 192

Query: 180 ERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           E F +  + +      +     A+S+  L  P+ H  L RPGI+LYG    +    P++ 
Sbjct: 193 ELFDSACAAFADEVGPIPLQHIANSAATLTRPDLHRDLVRPGIALYG-YPPVPTDVPLRP 251

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T  +RI L+++   G  + YG  +  TR + + +  IGYADG    L    S+    +
Sbjct: 252 AMTLTSRIALVKEVPEGHSIGYGRMRTTTRPTRLGLVPIGYADG----LHRAGSDRCDVL 307

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL---------DD 345
                G  +    P +G+I+MD  + D+        GD + +FG              DD
Sbjct: 308 VRTASGDRRA---PQVGRISMDQIVIDLGADSEARPGDEVFLFGDAGGDPGGPSASTADD 364

Query: 346 VALASGTTNYDLLVRIGTRYAK 367
            A A+GT  Y++L  +  R  +
Sbjct: 365 WAAAAGTIPYEVLTSVSGRVTR 386


>gi|241896461|ref|ZP_04783757.1| alanine racemase [Weissella paramesenteroides ATCC 33313]
 gi|241870441|gb|EER74192.1| alanine racemase [Weissella paramesenteroides ATCC 33313]
          Length = 381

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 146/363 (40%), Gaps = 32/363 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+KI   A+ +N       SG       VK NAYG G   +A A   AGV    V  ++E
Sbjct: 20  RIKISQAAVTHNVAVTRQASGAKFMFLAVKANAYGFGLIPMAQAAIKAGVDGLAVAVLDE 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
            + LR       I +L    P   K+I D +LI  +S +  L    + ++   S     L
Sbjct: 80  ALALRQAGITVPIIILGITLPQYAKLIADNDLIATVSDLDWLQAAQQNLAGSQSTLQVNL 139

Query: 127 QVDTGFNRLGLSLQEALD--FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            VDTG  R+G   +E+L    T+ +      +   I++H + +D  ++     QL  +  
Sbjct: 140 GVDTGMGRIGFRNRESLSEAITYLASQPIFFKYQSIMTHFSESDSLATDYFQKQLSNWHR 199

Query: 185 LISHYKGIEASLASSSGILLGPNYHF-----QLTRPGISLYGGTDKINKSHP---MQTVV 236
           L            ++SG  +   YH         R G  +YG      +  P   ++ V+
Sbjct: 200 LTDGLPMPPMVHLANSGAAM---YHADEIPTDYIRAGTVVYGIEPSRGEVLPDNYLKPVL 256

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E  +I +++  A   +SYG          +    IGYADG P  + G +         
Sbjct: 257 TLETELIFVKQMPANVGISYGHTYYTHEGEWVGTVPIGYADGLPRPIQGFEV-------- 308

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
                + G   PI+G+I MD  M  + + L   VG  + I G     +  L+DVA   G 
Sbjct: 309 ----LVNGQKAPIIGQIAMDQLMISLPEKLP--VGTVVTIIGKQGQYENTLEDVAQHVGL 362

Query: 353 TNY 355
             +
Sbjct: 363 APW 365


>gi|224283464|ref|ZP_03646786.1| alanine racemase [Bifidobacterium bifidum NCIMB 41171]
 gi|311064700|ref|YP_003971425.1| alanine racemase [Bifidobacterium bifidum PRL2010]
 gi|313140617|ref|ZP_07802810.1| alanine racemase [Bifidobacterium bifidum NCIMB 41171]
 gi|310867019|gb|ADP36388.1| Alr Alanine racemase [Bifidobacterium bifidum PRL2010]
 gi|313133127|gb|EFR50744.1| alanine racemase [Bifidobacterium bifidum NCIMB 41171]
          Length = 452

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 126/280 (45%), Gaps = 41/280 (14%)

Query: 126 LQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPS--SHVNS 176
           ++VD+GF R G +       L + +   H      +GQ S    HLA AD P     V S
Sbjct: 157 VKVDSGFGRNGFTPAGFDAALAKLVPLAHEGVLHIVGQWS----HLAVADSPDVPEFVAS 212

Query: 177 V--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              Q+E F       +  GI      LA+++  L  P  H +LTRPGI LYG        
Sbjct: 213 TDRQIESFTEFTRRMEAAGIAPEIRHLANTAATLNRPEIHLELTRPGIGLYGYEPDPAMG 272

Query: 230 HP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            P    ++  +T +A++  ++   AG  VSYG       ++  A+  +GYADG   + SG
Sbjct: 273 TPRDWHLKPAMTLQAQLGTVKDVEAGHGVSYGRTYLTPDNTSTAIVPLGYADGIHRSASG 332

Query: 286 LDSEHSPSVFLGGKGFIK------GYMVPILGKITMDMTMFDITDS---LSIEVGDYIQI 336
            D + +  V   G G ++        ++ + G++ MD  + D+  S   L +  GD +++
Sbjct: 333 FDMQGAKHVEKAG-GPVRVMTSAGPRLLHVCGRVCMDQFIVDLHGSAAELGVHEGDTVEL 391

Query: 337 FGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 392 FGPGRGEQYGEPTADDWARAADTISYEVFTCLRNRIPRLY 431


>gi|332799232|ref|YP_004460731.1| alanine racemase [Tepidanaerobacter sp. Re1]
 gi|332696967|gb|AEE91424.1| Alanine racemase [Tepidanaerobacter sp. Re1]
          Length = 401

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 154/361 (42%), Gaps = 35/361 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL  +  N  ++    G  R   VVK NAYG G   +A     +G     V+S+EEG
Sbjct: 8   LYVDLNTISENIKTIKNYIGATRLLVVVKANAYGHGMYPVAACAVESGADYLGVSSLEEG 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY----SKLMSCGVSHPY 124
           + LR    +  + V   I P Q +   + +L   + S   +       +K+      H  
Sbjct: 68  IFLRKSGIKEPVLVFNTILPEQAEDALNYDLTVTVCSFDTVQALNDAAAKMNKKAFVH-- 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTH-NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            +++DTG  R G+  + A++  H  + N K   +  I +H + A + S  +   Q   F 
Sbjct: 126 -VKIDTGLGRFGVLPEHAVEMVHIITANFKNIYIEGIYTHFSLATNES--ITRKQFNIFL 182

Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVV 236
           ++I       YK     + +S+ +L     H  + R G  +YG   +  +  S+P +   
Sbjct: 183 SIIKELEHQGYKIPLKHVCNSTAMLNYAEMHLDMVRVGNLVYGLCPSKNLKISNPSKIY- 241

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG----LDS-EHS 291
              ++II ++    G  V YG + K  R + +A+   GY DG  L +S      DS ++ 
Sbjct: 242 ---SKIIFLKTLPKGHYVGYGNRFKTRRHTTVAIVPFGYYDGLELFISQPNGIWDSLKNL 298

Query: 292 PSVFLGGKGFI--------KGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIK 342
               L   G I         G    ILGKI+M   + D+TD    + +GD +++    I 
Sbjct: 299 IKQILASFGVITANRTVKVNGIQCNILGKISMQSCIVDVTDIKDKVFIGDVVELSARRIN 358

Query: 343 L 343
           L
Sbjct: 359 L 359


>gi|145298692|ref|YP_001141533.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851464|gb|ABO89785.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 408

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 145/345 (42%), Gaps = 32/345 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L++DLTA + N  ++    G+   +  A++K +AYG G + + P++  A +    + S E
Sbjct: 44  LEVDLTAFEQNLQTLKTRLGDKGPQICAIMKADAYGHGIDLLVPSVVKANIPCIGIASNE 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E    R      R+  +    P + +      L  ++ S   L     +    + H   +
Sbjct: 104 EARVAREKGFSGRLMRVRAATPIEVEQALPYKLEELVGS---LVSAQGISDIALRHHTTI 160

Query: 127 QVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSL-------IISHLACADDPSSHVNSVQ 178
            V    N  G+S +  +D    ++    L  L L       I++H    +     +   Q
Sbjct: 161 PVHVALNSAGMS-RNGIDLRLADAKQDALAMLKLKGITPVGIMTHFPVEEKEDVKLGLAQ 219

Query: 179 LERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +     +     ++ S      A+S   L  P+ +F + RPG  LYG  D I      +
Sbjct: 220 FKLDSQWLLEAGKLDRSKITIHAANSFATLAVPDAYFDMVRPGGLLYG--DSIPSYTEYK 277

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  + ++  +    AG  V Y     L RDS +A   +GY+DGY   LS         
Sbjct: 278 RVMAFKTQVASVNHYAAGNTVGYDRTFTLKRDSWLANLPLGYSDGYRRALSN-------K 330

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            ++     I+G  VP++GK +M+  M D+TD   ++ GD + +FG
Sbjct: 331 AYV----LIQGQKVPVVGKTSMNTIMVDVTDLKGVKPGDEVVLFG 371


>gi|257878844|ref|ZP_05658497.1| alanine racemase [Enterococcus faecium 1,230,933]
 gi|257881480|ref|ZP_05661133.1| alanine racemase [Enterococcus faecium 1,231,502]
 gi|257890702|ref|ZP_05670355.1| alanine racemase [Enterococcus faecium 1,231,410]
 gi|258615086|ref|ZP_05712856.1| alanine racemase [Enterococcus faecium DO]
 gi|293560263|ref|ZP_06676760.1| alanine racemase [Enterococcus faecium E1162]
 gi|294621797|ref|ZP_06700956.1| alanine racemase [Enterococcus faecium U0317]
 gi|314938934|ref|ZP_07846199.1| alanine racemase [Enterococcus faecium TX0133a04]
 gi|314943515|ref|ZP_07850282.1| alanine racemase [Enterococcus faecium TX0133C]
 gi|314948190|ref|ZP_07851584.1| alanine racemase [Enterococcus faecium TX0082]
 gi|314951550|ref|ZP_07854596.1| alanine racemase [Enterococcus faecium TX0133A]
 gi|314991587|ref|ZP_07857063.1| alanine racemase [Enterococcus faecium TX0133B]
 gi|314994920|ref|ZP_07860047.1| alanine racemase [Enterococcus faecium TX0133a01]
 gi|257813072|gb|EEV41830.1| alanine racemase [Enterococcus faecium 1,230,933]
 gi|257817138|gb|EEV44466.1| alanine racemase [Enterococcus faecium 1,231,502]
 gi|257827062|gb|EEV53688.1| alanine racemase [Enterococcus faecium 1,231,410]
 gi|291598629|gb|EFF29687.1| alanine racemase [Enterococcus faecium U0317]
 gi|291605713|gb|EFF35150.1| alanine racemase [Enterococcus faecium E1162]
 gi|313590902|gb|EFR69747.1| alanine racemase [Enterococcus faecium TX0133a01]
 gi|313593871|gb|EFR72716.1| alanine racemase [Enterococcus faecium TX0133B]
 gi|313596244|gb|EFR75089.1| alanine racemase [Enterococcus faecium TX0133A]
 gi|313597887|gb|EFR76732.1| alanine racemase [Enterococcus faecium TX0133C]
 gi|313641643|gb|EFS06223.1| alanine racemase [Enterococcus faecium TX0133a04]
 gi|313645323|gb|EFS09903.1| alanine racemase [Enterococcus faecium TX0082]
          Length = 373

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 33/352 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK N YG G  + A A    G   F V++++EGV+LR       I +L  +      +
Sbjct: 37  AVVKANGYGHGAIETAEAAVAGGASGFCVSNLDEGVELREAGFTQPILILNMVPYDALTV 96

Query: 94  IFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA--LQVDTGFNRLGL----SLQEALDFT 146
               +L     +   L   + ++    +  P +  L+ DTG  R+G      ++EA  F 
Sbjct: 97  AVAHDLSVTAGTREWLQAAAAVLEKSKLETPLSIHLKADTGMGRIGFCTPEEVKEAAAFI 156

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILL 204
             S   ++ +   + +H + AD       ++Q ERF  ++     +     +++S+  L 
Sbjct: 157 KES---RVLEWEGLFTHFSTADQADDTYWNLQKERFIEVLKKLPELPRYVHVSNSATALW 213

Query: 205 GPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
                  + R G+++YG       + + +P+Q  +   + +I ++K  AGE + YG    
Sbjct: 214 HDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSELIQVKKLPAGEGIGYGETYI 273

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
                 I    IGYADG+P  + G                ++G     +G++ MD  M  
Sbjct: 274 TPEAEWIGTIPIGYADGWPRKMQGFSL------------LVEGNYCETIGRVCMDQLMIR 321

Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +       VG  + + G     +I + D+A   GT +Y++   +G R  + Y
Sbjct: 322 LPQEFP--VGTKVTLIGKNADKEITMQDIADQLGTIHYEVACGLGQRIPREY 371


>gi|50843722|ref|YP_056949.1| alanine racemase 1 [Propionibacterium acnes KPA171202]
 gi|289424661|ref|ZP_06426444.1| alanine racemase [Propionibacterium acnes SK187]
 gi|289427468|ref|ZP_06429181.1| alanine racemase [Propionibacterium acnes J165]
 gi|295131811|ref|YP_003582474.1| alanine racemase [Propionibacterium acnes SK137]
 gi|81826355|sp|Q6A5H2|ALR_PROAC RecName: Full=Alanine racemase
 gi|50841324|gb|AAT83991.1| alanine racemase 1 [Propionibacterium acnes KPA171202]
 gi|289155358|gb|EFD04040.1| alanine racemase [Propionibacterium acnes SK187]
 gi|289159398|gb|EFD07589.1| alanine racemase [Propionibacterium acnes J165]
 gi|291376898|gb|ADE00753.1| alanine racemase [Propionibacterium acnes SK137]
 gi|313806771|gb|EFS45269.1| alanine racemase [Propionibacterium acnes HL087PA2]
 gi|313812020|gb|EFS49734.1| alanine racemase [Propionibacterium acnes HL083PA1]
 gi|313815645|gb|EFS53359.1| alanine racemase [Propionibacterium acnes HL059PA1]
 gi|313821611|gb|EFS59325.1| alanine racemase [Propionibacterium acnes HL036PA1]
 gi|313824443|gb|EFS62157.1| alanine racemase [Propionibacterium acnes HL036PA2]
 gi|313826790|gb|EFS64504.1| alanine racemase [Propionibacterium acnes HL063PA1]
 gi|313829078|gb|EFS66792.1| alanine racemase [Propionibacterium acnes HL063PA2]
 gi|313832454|gb|EFS70168.1| alanine racemase [Propionibacterium acnes HL007PA1]
 gi|314916134|gb|EFS79965.1| alanine racemase [Propionibacterium acnes HL005PA4]
 gi|314917397|gb|EFS81228.1| alanine racemase [Propionibacterium acnes HL050PA1]
 gi|314921737|gb|EFS85568.1| alanine racemase [Propionibacterium acnes HL050PA3]
 gi|314926087|gb|EFS89918.1| alanine racemase [Propionibacterium acnes HL036PA3]
 gi|314930661|gb|EFS94492.1| alanine racemase [Propionibacterium acnes HL067PA1]
 gi|314955415|gb|EFS99820.1| alanine racemase [Propionibacterium acnes HL027PA1]
 gi|314959415|gb|EFT03517.1| alanine racemase [Propionibacterium acnes HL002PA1]
 gi|314961740|gb|EFT05841.1| alanine racemase [Propionibacterium acnes HL002PA2]
 gi|314975119|gb|EFT19214.1| alanine racemase [Propionibacterium acnes HL053PA1]
 gi|314977529|gb|EFT21624.1| alanine racemase [Propionibacterium acnes HL045PA1]
 gi|314979919|gb|EFT24013.1| alanine racemase [Propionibacterium acnes HL072PA2]
 gi|314986875|gb|EFT30967.1| alanine racemase [Propionibacterium acnes HL005PA2]
 gi|315086530|gb|EFT58506.1| alanine racemase [Propionibacterium acnes HL002PA3]
 gi|315087933|gb|EFT59909.1| alanine racemase [Propionibacterium acnes HL072PA1]
 gi|315096840|gb|EFT68816.1| alanine racemase [Propionibacterium acnes HL038PA1]
 gi|315102406|gb|EFT74382.1| alanine racemase [Propionibacterium acnes HL046PA1]
 gi|315109676|gb|EFT81652.1| alanine racemase [Propionibacterium acnes HL030PA2]
 gi|327333048|gb|EGE74780.1| alanine racemase [Propionibacterium acnes HL096PA2]
 gi|327334042|gb|EGE75757.1| alanine racemase [Propionibacterium acnes HL096PA3]
 gi|327444331|gb|EGE90985.1| alanine racemase [Propionibacterium acnes HL013PA2]
 gi|327446804|gb|EGE93458.1| alanine racemase [Propionibacterium acnes HL043PA2]
 gi|327448756|gb|EGE95410.1| alanine racemase [Propionibacterium acnes HL043PA1]
 gi|327455097|gb|EGF01752.1| alanine racemase [Propionibacterium acnes HL087PA3]
 gi|327456233|gb|EGF02888.1| alanine racemase [Propionibacterium acnes HL083PA2]
 gi|328755932|gb|EGF69548.1| alanine racemase [Propionibacterium acnes HL087PA1]
 gi|328757652|gb|EGF71268.1| alanine racemase [Propionibacterium acnes HL020PA1]
 gi|328759003|gb|EGF72619.1| alanine racemase [Propionibacterium acnes HL025PA2]
 gi|328759903|gb|EGF73492.1| alanine racemase [Propionibacterium acnes HL099PA1]
 gi|332676676|gb|AEE73492.1| alanine racemase [Propionibacterium acnes 266]
          Length = 375

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT 
Sbjct: 297 GHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  +++
Sbjct: 357 SYEITCAISKRVDRYW 372


>gi|148547263|ref|YP_001267365.1| alanine racemase [Pseudomonas putida F1]
 gi|148511321|gb|ABQ78181.1| alanine racemase [Pseudomonas putida F1]
          Length = 409

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 149/349 (42%), Gaps = 41/349 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++  +AL++N  ++ A L+G ++  AV+K +AYG G   + P++   GV    V S EE
Sbjct: 46  VEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAVASNEE 105

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
              +R   +T Q     L  +   ++ + +D   +     V    F  +  +    H   
Sbjct: 106 ARVVRASGFTGQLVRVRLASLSELEDGLQYDMEEL-----VGSAEFARQADAIAARHGKT 160

Query: 126 LQVDTGFNRLGLSLQ-----------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L++    N  G+S             EAL  T    ++K  +L  +++H A  D      
Sbjct: 161 LRIHMALNSSGMSRNGVEMATWSGRGEALQIT----DQKHLKLVALMTHFAVEDKDDVRK 216

Query: 175 NSVQL-ERFRTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
                 E+   LI H K   + L    A+S   L  P     + R G +L+G  D +   
Sbjct: 217 GLAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPAR 274

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  +  ++ +  +    AG  V Y     L RDS +A   +GY+DGY    +     
Sbjct: 275 TEYKRAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN---- 330

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                   G   I G+ VP++GK++M+  M D+TD   ++ G+ + +FG
Sbjct: 331 -------KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFG 372


>gi|257885752|ref|ZP_05665405.1| alanine racemase [Enterococcus faecium 1,231,501]
 gi|261207115|ref|ZP_05921804.1| alanine racemase [Enterococcus faecium TC 6]
 gi|289565238|ref|ZP_06445689.1| alanine racemase [Enterococcus faecium D344SRF]
 gi|293556893|ref|ZP_06675454.1| alanine racemase [Enterococcus faecium E1039]
 gi|293567805|ref|ZP_06679146.1| alanine racemase [Enterococcus faecium E1071]
 gi|294615126|ref|ZP_06695012.1| alanine racemase [Enterococcus faecium E1636]
 gi|294618734|ref|ZP_06698265.1| alanine racemase [Enterococcus faecium E1679]
 gi|257821608|gb|EEV48738.1| alanine racemase [Enterococcus faecium 1,231,501]
 gi|260078743|gb|EEW66445.1| alanine racemase [Enterococcus faecium TC 6]
 gi|289162894|gb|EFD10743.1| alanine racemase [Enterococcus faecium D344SRF]
 gi|291589390|gb|EFF21197.1| alanine racemase [Enterococcus faecium E1071]
 gi|291592068|gb|EFF23691.1| alanine racemase [Enterococcus faecium E1636]
 gi|291595023|gb|EFF26369.1| alanine racemase [Enterococcus faecium E1679]
 gi|291600977|gb|EFF31268.1| alanine racemase [Enterococcus faecium E1039]
          Length = 373

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 33/352 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK N YG G  + A A    G   F V++++EGV+LR       I +L  +      +
Sbjct: 37  AVVKANGYGHGAIETAEAAVAGGASGFCVSNLDEGVELREAGFTQPILILNMVPYDALTV 96

Query: 94  IFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA--LQVDTGFNRLGL----SLQEALDFT 146
               +L     +   L   + ++    +  P +  L+ DTG  R+G      ++EA  F 
Sbjct: 97  AVAHDLSVTAGTREWLQAAAAVLEKSKLETPLSIHLKADTGMGRIGFCTPEEVKEAAAFI 156

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA--SLASSSGILL 204
             S   ++ +   + +H + AD       ++Q ERF  ++     +     +++S+  L 
Sbjct: 157 KES---RVLEWEGLFTHFSTADQADDTYWNLQKERFIEVLKKLPELPRYIHVSNSATALW 213

Query: 205 GPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
                  + R G+++YG       + + +P+Q  +   + +I ++K  AGE + YG    
Sbjct: 214 HDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSELIQVKKLPAGEGIGYGETYI 273

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
                 I    IGYADG+P  + G                ++G     +G++ MD  M  
Sbjct: 274 TPEAEWIGTIPIGYADGWPRKMQGFSL------------LVEGNYCETIGRVCMDQLMIR 321

Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +       VG  + + G     +I + D+A   GT +Y++   +G R  + Y
Sbjct: 322 LPQEFP--VGTKVTLIGKNADKEITMQDIADQLGTIHYEVACGLGQRIPREY 371


>gi|314985124|gb|EFT29216.1| alanine racemase [Propionibacterium acnes HL005PA1]
 gi|314990744|gb|EFT34835.1| alanine racemase [Propionibacterium acnes HL005PA3]
          Length = 375

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILNLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT 
Sbjct: 297 GHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  +++
Sbjct: 357 SYEITCAISKRVDRYW 372


>gi|282852968|ref|ZP_06262305.1| alanine racemase [Propionibacterium acnes J139]
 gi|282582421|gb|EFB87801.1| alanine racemase [Propionibacterium acnes J139]
          Length = 375

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 160/378 (42%), Gaps = 36/378 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  GV+    + V
Sbjct: 72  ELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLCPERLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LVETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN------------ 295

Query: 298 GKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
            KG+  I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   G
Sbjct: 296 -KGYVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLG 354

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++   I  R  + +
Sbjct: 355 TISYEITCAISKRVNRCW 372


>gi|315099423|gb|EFT71399.1| alanine racemase [Propionibacterium acnes HL059PA2]
          Length = 375

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAESTRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT 
Sbjct: 297 GHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  +++
Sbjct: 357 SYEITCAISKRVDRYW 372


>gi|313813897|gb|EFS51611.1| alanine racemase [Propionibacterium acnes HL025PA1]
          Length = 375

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILKLSPADPCDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT 
Sbjct: 297 GHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  +++
Sbjct: 357 SYEITCAISKRVDRYW 372


>gi|117619060|ref|YP_857116.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560467|gb|ABK37415.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 408

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 145/345 (42%), Gaps = 32/345 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L++DL A ++N  ++    G+   +  A++K +AYG G + + P++  AG+    + S E
Sbjct: 44  LEVDLGAFEHNIQTLKDRLGDKGPKICAIMKADAYGHGIDLLVPSVVKAGIPCIGIASNE 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E    R      R+  +    P + +      +  +I S   L     +      H   +
Sbjct: 104 EARVAREKGFTGRLMRVRAATPAEVEQALPYKMEELIGS---LVSAQGIADIAQRHHTNI 160

Query: 127 QVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSL-------IISHLACADDPSSHVNSVQ 178
            V    N  G+S +  +D    +S    L  L L       I++H    +     +   Q
Sbjct: 161 PVHIALNSAGMS-RNGIDLRLADSKEDALAMLKLKGITPVGIMTHFPVEEKEDVKMGLAQ 219

Query: 179 LERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +     +     ++ S      A+S   L  P+ +F + RPG  LYG  D I      +
Sbjct: 220 FKLDSQWLLEAGKLDRSKITIHAANSFATLEVPDAYFDMVRPGGLLYG--DSIPSYTEYK 277

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  + ++  +    AG  V Y     L RDS +A   +GY+DGY   LS         
Sbjct: 278 RVMAFKTQVASVNHYPAGNTVGYDRTFTLKRDSWLANLPLGYSDGYRRALSN-------K 330

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            ++     I+G  VP++GK +M+  M D+TD   ++ GD + +FG
Sbjct: 331 AYV----LIQGQKVPVVGKTSMNTIMVDVTDLKGVKPGDEVVLFG 371


>gi|184200309|ref|YP_001854516.1| alanine racemase [Kocuria rhizophila DC2201]
 gi|183580539|dbj|BAG29010.1| alanine racemase [Kocuria rhizophila DC2201]
          Length = 645

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 170/410 (41%), Gaps = 80/410 (19%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +  L+      AVVK NAYG G  ++A A   AG        V E + 
Sbjct: 19  VDLAAVRHNVGRLLELARGRTLIAVVKANAYGHGAPQVARAALEAGAHMLGTAHVSEALA 78

Query: 71  LR-----------LYTPQA------RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
           LR           L+TP        R  V  G+  G+   +              L    
Sbjct: 79  LRAEGITAPVLAWLHTPSTDFAAAVREDVRLGVSGGELDAV--------------LAAAR 124

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDP 170
           +     V H   L++D+G  R G + ++    +     +  + L  +  I +HLA AD+P
Sbjct: 125 EAGRPAVVH---LKLDSGLGRNGATPEQWPALVRRVREAEGEGLLSVEGIFTHLAVADEP 181

Query: 171 SSHVNSVQLERFRTLI--SHYKGIEASL---ASSSGILLGPNYH------FQLTRPGISL 219
           +    + QL    T +  +   G+  ++   A++ G+L   +            R G+ L
Sbjct: 182 ARPETAEQLATLTTAVRTAREAGLSPTMVHAANTPGLLSAADREDPDAILRDAVRVGLGL 241

Query: 220 YGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           YG +   D+  +   +   +T   R+  ++   AG  VSYG   +    + +A+  +GYA
Sbjct: 242 YGLSPFADRTPEDFGLVPAMTLRTRVANVKDVPAGAGVSYGLTYRTEGPTRLALIPLGYA 301

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL---------- 326
           DG P   +G        V +G +      + P++G+I MD  + D++ S           
Sbjct: 302 DGVPRVATGA------PVRIGNR------LHPVVGRIAMDQCVVDLSRSRPVTEAAGKPG 349

Query: 327 -----SIEVGDYIQIFGP--DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
                ++ +GD   +FG   +  + D A A+GT NY+++ R+  R  + +
Sbjct: 350 AAREPTVRIGDEAVLFGAGSNPSVTDWADAAGTINYEVVTRLSPRVPREH 399


>gi|193077032|gb|ABO11785.2| alanine racemase [Acinetobacter baumannii ATCC 17978]
          Length = 430

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 146/343 (42%), Gaps = 30/343 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  A ++N    N L +G  +   V+K NAYG   + + P++    V    +TS  E
Sbjct: 49  IEVDTQAFEDNIKRTNQLLNGKTQLCVVMKANAYGHSIDLLMPSVMKLNVSCIGITSNAE 108

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
              +R +  + +I  L      +       N+  ++ +  Q T  SK       +  Y+L
Sbjct: 109 AAMVRKHGYKGKITRLRTATDSEIINAHALNIEELLGNYDQATRISKWAEANNTTVHYSL 168

Query: 127 QVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQL-ERF 182
            +++G  +R GL +  A          KL  L +  I++H A  D+        Q  E+ 
Sbjct: 169 ALNSGGMDRNGLEMSTAQGKEQAVAITKLPNLKIDGIMTHYAVEDEKYVRERLAQFNEQT 228

Query: 183 RTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVVT 237
             LI   K     L    A+S   +  P  H  + R G  +YG       +HP  + ++ 
Sbjct: 229 AWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDF----PNHPEYKRMMA 284

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + +I  +   L G  V Y     LTRDS +A   +GY+DGY  + S             
Sbjct: 285 FKTQIAAVNNYLKGSTVGYDQTYTLTRDSKLANLPVGYSDGYRRSFSN------------ 332

Query: 298 GKGFI--KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            K F+   G   P++G+++M+  M D+TD    + GD + +FG
Sbjct: 333 -KAFVLVNGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFG 374


>gi|126641403|ref|YP_001084387.1| alanine racemase [Acinetobacter baumannii ATCC 17978]
          Length = 409

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 146/341 (42%), Gaps = 26/341 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  A ++N    N L +G  +   V+K NAYG   + + P++    V    +TS  E
Sbjct: 28  IEVDTQAFEDNIKRTNQLLNGKTQLCVVMKANAYGHSIDLLMPSVMKLNVSCIGITSNAE 87

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
              +R +  + +I  L      +       N+  ++ +  Q T  SK       +  Y+L
Sbjct: 88  AAMVRKHGYKGKITRLRTATDSEIINAHALNIEELLGNYDQATRISKWAEANNTTVHYSL 147

Query: 127 QVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQL-ERF 182
            +++G  +R GL +  A          KL  L +  I++H A  D+        Q  E+ 
Sbjct: 148 ALNSGGMDRNGLEMSTAQGKEQAVAITKLPNLKIDGIMTHYAVEDEKYVRERLAQFNEQT 207

Query: 183 RTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVVT 237
             LI   K     L    A+S   +  P  H  + R G  +YG       +HP  + ++ 
Sbjct: 208 AWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDF----PNHPEYKRMMA 263

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + +I  +   L G  V Y     LTRDS +A   +GY+DGY  + S          F+ 
Sbjct: 264 FKTQIAAVNNYLKGSTVGYDQTYTLTRDSKLANLPVGYSDGYRRSFSN-------KAFV- 315

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
               + G   P++G+++M+  M D+TD    + GD + +FG
Sbjct: 316 ---LVNGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFG 353


>gi|237786300|ref|YP_002907005.1| Alanine racemase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759212|gb|ACR18462.1| Alanine racemase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 615

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 170/428 (39%), Gaps = 85/428 (19%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYNAG 56
            L + ID  AL    H+  A++ NA+ A         AVVK N Y  G  + A      G
Sbjct: 30  LLTMTIDRDALA---HNAQAVARNAQLANPDHPAELMAVVKANGYNHGAVEAARVFLANG 86

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIF--VLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYS 113
                V ++ E V+LR    QA I   +L  I    + +     L   I   VP L    
Sbjct: 87  ATQLGVATITEAVELR----QAGISAPILAWIWNADDHVSVKAALDYGIDLGVPTLAHIR 142

Query: 114 KLMSCGVSHPYALQ------------VDTGFNRLGLS---LQEALDFTHNSFNKKLGQLS 158
            ++        + +            VD+G +R G+S     +AL     + +  +  ++
Sbjct: 143 AIVDEATERKRSQEDWEFVPPRVTVMVDSGLSRSGISPDQWDDALKELSAASSDSIIDVT 202

Query: 159 LIISHLACADDPSSHVNSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLT 213
              +HLA AD   +  N+ Q  +F   I   +  GI      + +S   +  P+  +Q+ 
Sbjct: 203 GAFTHLASADAADNPSNNRQKAQFDAAIEELQAAGIPVRINHMCNSPASVTRPDMFYQMV 262

Query: 214 RPGISLYG--------------GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
           RPG++LYG              G+  +++  P  T+    A I+  R   AGE VSYGG 
Sbjct: 263 RPGVALYGMDPLEEPADRSASTGSSLVSQLKPAMTL---SAPIVAKRLVKAGESVSYGGT 319

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
                D++  V   GYADG P  LSG             +  I G   P +G++ MD  +
Sbjct: 320 WTADVDTVTGVVPAGYADGIPRALSGR-----------MEVAINGRRYPQIGRVCMDQIV 368

Query: 320 FDI-----TDSLSIEVGDYIQIFGP-------DIKLDDVALAS------GTTNYDLLVRI 361
             +       + ++  GD   IFGP       D K   +  A+      GT +Y++L   
Sbjct: 369 VALGPAGSKQASAVHQGDEAVIFGPPGECIGSDGKPASLPTATELAETLGTIHYEILTSP 428

Query: 362 GTRYAKFY 369
            TR  + Y
Sbjct: 429 HTRVHRRY 436


>gi|313498322|gb|ADR59688.1| Alr [Pseudomonas putida BIRD-1]
          Length = 380

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 149/349 (42%), Gaps = 41/349 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++  +AL++N  ++ A L+G ++  AV+K +AYG G   + P++   GV    V S EE
Sbjct: 17  VEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAVASNEE 76

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
              +R   +T Q     L  +   ++ + +D   +     V    F  +  +    H   
Sbjct: 77  ARVVRASGFTGQLVRVRLASLSELEDGLQYDMEEL-----VGSAEFARQADAIAARHGKT 131

Query: 126 LQVDTGFNRLGLSLQ-----------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L++    N  G+S             EAL  T    ++K  +L  +++H A  D      
Sbjct: 132 LRIHMALNSSGMSRNGVEMATWSGRGEALQIT----DQKHLKLVALMTHFAVEDKDDVRK 187

Query: 175 NSVQL-ERFRTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
                 E+   LI H K   + L    A+S   L  P     + R G +L+G  D +   
Sbjct: 188 GLAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPGR 245

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  +  ++ +  +    AG  V Y     L RDS +A   +GY+DGY    +     
Sbjct: 246 TEYKRAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN---- 301

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                   G   I G+ VP++GK++M+  M D+TD   ++ G+ + +FG
Sbjct: 302 -------KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFG 343


>gi|257896498|ref|ZP_05676151.1| alanine racemase [Enterococcus faecium Com12]
 gi|257833063|gb|EEV59484.1| alanine racemase [Enterococcus faecium Com12]
          Length = 373

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 149/352 (42%), Gaps = 33/352 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK N YG G  + A A    G   F V++++EGV+LR       I +L  +      +
Sbjct: 37  AVVKANGYGHGAVETAEAAVAGGASGFCVSNLDEGVELREAGFTQPILILNMVPYDALAL 96

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYA--LQVDTGFNRLGL----SLQEALDFT 146
               +L     +   L   + ++  G +  P +  L+ DTG  R+G      ++EA  F 
Sbjct: 97  AVAHDLSVTAGTREWLQVAAAILEEGKLEMPLSIHLKADTGMGRIGFCTPEEVKEAAAFI 156

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILL 204
             S   ++ +   + +H + AD P     ++Q ERF  ++     +     +++S+  L 
Sbjct: 157 RES---RVLEWEGLFTHFSTADQPDDTYWNLQKERFMEVLKKLPELPRYVHVSNSATALW 213

Query: 205 GPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
                  + R G+++YG       + + +P+Q  +   + +I ++K  AGE + YG    
Sbjct: 214 HDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSELIQVKKLPAGEGIGYGETYI 273

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
                 I    IGYADG+   + G                ++G     +G++ MD  M  
Sbjct: 274 TPEAEWIGTIPIGYADGWLRKMQGFSL------------LVEGNYCETIGRVCMDQLMIR 321

Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +       VG  + + G     +I + DVA   GT +Y++   +G R  + Y
Sbjct: 322 LPQEFP--VGTKVTLIGKNADKEITMQDVADQLGTIHYEVACGLGQRIPREY 371


>gi|314969163|gb|EFT13261.1| alanine racemase [Propionibacterium acnes HL037PA1]
          Length = 375

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 158/376 (42%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V  V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVAPVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT 
Sbjct: 297 GHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  +++
Sbjct: 357 SYEITCAISKRVDRYW 372


>gi|313771042|gb|EFS37008.1| alanine racemase [Propionibacterium acnes HL074PA1]
          Length = 375

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 163/384 (42%), Gaps = 48/384 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS------ 64
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+   +      
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATGAEGQ 71

Query: 65  --VEEGVKLR-LYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
             VE G+ L  L  P A  + +   I  G    + D + +  +S           +  G+
Sbjct: 72  ELVEAGITLPILKLPPADPWDMDAAITSGIRLTVVDFDTLEAVSKA--------AVRLGI 123

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQL 179
           +    + VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     ++
Sbjct: 124 TAKIHIAVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREI 183

Query: 180 ERFRTLIS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKS 229
           + F T +S    H         ++SG +LG +     + R GI  YG       D+ +  
Sbjct: 184 DTFMTAVSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL- 242

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           HP  + ++    +  ++    G+ + YG  +  +  + IA   +GYADG    LS     
Sbjct: 243 HPALSWIS---HVTFVKTVSVGDTIGYGRTRTASETTKIATVPVGYADGLSRGLSN---- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD
Sbjct: 296 -------KGHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADD 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y++   I  R  +++
Sbjct: 349 MAELLGTISYEITCAISKRVDRYW 372


>gi|313833423|gb|EFS71137.1| alanine racemase [Propionibacterium acnes HL056PA1]
          Length = 375

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILKLPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAESTRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT 
Sbjct: 297 GHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  +++
Sbjct: 357 SYEITCAISKRVDRYW 372


>gi|26990430|ref|NP_745855.1| alanine racemase [Pseudomonas putida KT2440]
 gi|24985399|gb|AAN69319.1|AE016569_3 alanine racemase, putative [Pseudomonas putida KT2440]
          Length = 409

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 149/349 (42%), Gaps = 41/349 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++  +AL++N  ++ A L+G ++  AV+K +AYG G   + P++   GV    V S EE
Sbjct: 46  VEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAVASNEE 105

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
              +R   +T Q     L  +   ++ + +D   +     V    F  +  +    H   
Sbjct: 106 ARVVRASGFTGQLVRVRLASLSELEDGLQYDMEEL-----VGSAEFARQADAIAARHGKT 160

Query: 126 LQVDTGFNRLGLSLQ-----------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L++    N  G+S             EAL  T    ++K  +L  +++H A  D      
Sbjct: 161 LRIHMALNSSGMSRNGVEMATWSGRGEALQIT----DQKHLKLVALMTHFAVEDKDDVRK 216

Query: 175 NSVQL-ERFRTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
                 E+   LI H +   + L    A+S   L  P     + R G +L+G  D +   
Sbjct: 217 GLAAFNEQTDWLIKHARLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPAR 274

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  +  ++ +  +    AG  V Y     L RDS +A   +GY+DGY    +     
Sbjct: 275 TEYKRAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN---- 330

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                   G   I G+ VP++GK++M+  M D+TD   ++ G+ + +FG
Sbjct: 331 -------KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFG 372


>gi|315107293|gb|EFT79269.1| alanine racemase [Propionibacterium acnes HL030PA1]
          Length = 375

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILKLPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFPRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT 
Sbjct: 297 GHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  +++
Sbjct: 357 SYEITCAISKRVDRYW 372


>gi|227550864|ref|ZP_03980913.1| alanine racemase [Enterococcus faecium TX1330]
 gi|293379277|ref|ZP_06625423.1| alanine racemase [Enterococcus faecium PC4.1]
 gi|227179962|gb|EEI60934.1| alanine racemase [Enterococcus faecium TX1330]
 gi|292642073|gb|EFF60237.1| alanine racemase [Enterococcus faecium PC4.1]
          Length = 374

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 149/352 (42%), Gaps = 33/352 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK N YG G  + A A    G   F V++++EGV+LR       I +L  +      +
Sbjct: 38  AVVKANGYGHGAVETAEAAVAGGASGFCVSNLDEGVELREAGFTQPILILNMVPYDALAL 97

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYA--LQVDTGFNRLGL----SLQEALDFT 146
               +L     +   L   + ++  G +  P +  L+ DTG  R+G      ++EA  F 
Sbjct: 98  AVAHDLSVTAGTREWLQVAAAILEEGKLEMPLSIHLKADTGMGRIGFCTPEEVKEAAAFI 157

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILL 204
             S   ++ +   + +H + AD P     ++Q ERF  ++     +     +++S+  L 
Sbjct: 158 RES---RVLEWEGLFTHFSTADQPDDTYWNLQKERFMEVLKKLPELPRYVHVSNSATALW 214

Query: 205 GPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
                  + R G+++YG       + + +P+Q  +   + +I ++K  AGE + YG    
Sbjct: 215 HDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSELIQVKKLPAGEGIGYGETYI 274

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
                 I    IGYADG+   + G                ++G     +G++ MD  M  
Sbjct: 275 TPEAEWIGTIPIGYADGWLRKMQGFSL------------LVEGNYCETIGRVCMDQLMIR 322

Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +       VG  + + G     +I + DVA   GT +Y++   +G R  + Y
Sbjct: 323 LPQEFP--VGTKVTLIGKNADKEITMQDVADQLGTIHYEVACGLGQRIPREY 372


>gi|313677342|ref|YP_004055338.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312944040|gb|ADR23230.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 395

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 166/375 (44%), Gaps = 57/375 (15%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L+ N   +AV+K NAYG G + + P   +A V+   V S  E  ++     +    ++ G
Sbjct: 29  LAENVLLSAVLKGNAYGHGIKGMVPLFESANVKHLSVFSTHEAEQVCQVKKKTTEVMIMG 88

Query: 86  IHPGQEKIIFDTNLIPV----ISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQ 140
               +E      N +      +  +     Y+K L      H   ++V+TG NR G   +
Sbjct: 89  WMEDEETEWAIENEVEFYVFEMGRLKAALHYAKTLNKIAKIH---VEVETGMNRTGFE-E 144

Query: 141 EALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSV-QLERFRTLISHYKGIEASL- 196
           E L+       +    +S +   +H A A+  ++++  V Q+++++ +   +  +E  L 
Sbjct: 145 EHLEELMQMMKENHEYISFVGLCTHYAGAESITNYLRVVDQIKKYKKIYDLF--VENDLV 202

Query: 197 ------ASSSGILLGPNYHFQLTRPGISLYG-----------------GTDKINKS--HP 231
                 A S+  +  P     + R GI LYG                 G D +++   HP
Sbjct: 203 PKRRHTACSAAAMSYPETQMDMVRIGILLYGFWPSQETFIAYQRSNGHGQDGLDRKVRHP 262

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++  ++I+ +++   GE + YG   + T+   IA   +GYA G+  +LS       
Sbjct: 263 LKRVISWRSKIMSVKEVPVGEFIGYGTSYQATKKMKIATVPVGYAYGFARSLSN------ 316

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA-- 349
                 G+  + G  V ++  + M++ + ++T+  ++  GD + + G + K+ +V +A  
Sbjct: 317 -----QGRVIVNGKRVAVISTVNMNLMIINVTECKNVGKGDEVIMIGSNGKV-NVTVASF 370

Query: 350 ---SGTTNYDLLVRI 361
              S   NY+LL R+
Sbjct: 371 GELSNQLNYELLSRL 385


>gi|300172538|ref|YP_003771703.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811]
 gi|299886916|emb|CBL90884.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811]
          Length = 370

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 157/371 (42%), Gaps = 31/371 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++I   ALK+N   +   SG  +    VK NAYGLG    + A    GV    V  ++E
Sbjct: 10  QIEISKKALKHNVAVVKQTSGADKIFLAVKSNAYGLGLVPTSKAAVAGGVYGLAVAVIDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR       I VL        +++   +++  + S+  L   ++ ++       +L 
Sbjct: 70  ALALRHERITEPILVLGISQAKYAELMAVQHIMATVVSLSWLKEAAQSLTGEQRLQVSLG 129

Query: 128 VDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           VDTG  R+G   +E+L    T+   +K +     + +H A +D   +    +QL+R+  +
Sbjct: 130 VDTGMGRIGFRTRESLAQAITYLQAHKDIFDYVGLATHFAESDSVQTDYFYMQLKRWHDI 189

Query: 186 ISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYG---GTDKINKSHPMQTVVT 237
                  +    ++SG  +   YH      ++ R G  LYG      ++     +Q V++
Sbjct: 190 TDGLPEPKYYHVANSGAAM---YHADEVPHEVIRVGTVLYGVEPSRGELADGKNLQPVMS 246

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  +++  AGE +SY  +   + D  I    IGY DG+   +SG            
Sbjct: 247 LRSEMNFVKQLPAGEGISYSHKYTTSSDEWIGTVPIGYGDGWLRKMSGFSV--------- 297

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G   PI+G++ MD  M  +       VG  + + G D      L+DVA  +   
Sbjct: 298 ---IVDGQYAPIVGQVAMDQLMIKLPHEYP--VGTKVTLIGKDGDLENTLEDVAQHANLA 352

Query: 354 NYDLLVRIGTR 364
            ++++  +  R
Sbjct: 353 PWEIMTGMQDR 363


>gi|311745246|ref|ZP_07719031.1| alanine racemase [Algoriphagus sp. PR1]
 gi|126577772|gb|EAZ81992.1| alanine racemase [Algoriphagus sp. PR1]
          Length = 385

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 157/362 (43%), Gaps = 51/362 (14%)

Query: 8   RLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+++  ++L  N + +    G   R ++VVK NAYG G  +       AGV  F   S  
Sbjct: 7   RIELSQSSLTTNINFIKKKIGKGVRISSVVKANAYGHGITEFVKMAEKAGVSHFATASAF 66

Query: 67  EGVK-LRLYTPQARIFVL---------YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           E  + +   +  + + ++         + +  G E  +F+   +P++    Q        
Sbjct: 67  EAEEVMDAKSENSEVMIMGILYDEDIDWAVENGIEFYVFNYARLPLVLKSAQ-------- 118

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHV 174
             G      ++V+TG NR GL+ +E L  T N   K    +    + +H   A++ S+  
Sbjct: 119 KLGKKAKVHIEVETGANRTGLTDKEFLP-TLNFLKKHSEDIIFKGLCTHFGGAENISNQF 177

Query: 175 N-SVQLERFRTLISH--YKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG------- 221
             + Q +R++  +     KG+      +A S+  L   +  + + R G++ YG       
Sbjct: 178 KINKQHDRYKNFLKKCKQKGMMPEVRHIACSAAALAYKDTVYDMVRIGVAQYGFWPSPDI 237

Query: 222 ---GTDKINKSH--PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
                 +I K     ++ + T +  ++ IR    GE + YG   +  +D  +AV  +GY+
Sbjct: 238 YYMHLQEIGKQSDGALKRIFTWKTDVMDIRDVDEGEFIGYGTSFQAVQDMKVAVMPLGYS 297

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           +GYP   S             G   IKG  VPI+G I M++ M D+T+   +E+G+ + +
Sbjct: 298 NGYPRAQSNR-----------GHVLIKGKKVPIVGLINMNLFMVDVTNIPGVELGEEVVL 346

Query: 337 FG 338
            G
Sbjct: 347 VG 348


>gi|257893317|ref|ZP_05672970.1| alanine racemase [Enterococcus faecium 1,231,408]
 gi|257829696|gb|EEV56303.1| alanine racemase [Enterococcus faecium 1,231,408]
          Length = 373

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 33/352 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK N YG G  + A A    G   F V++++EGV+LR       I +L  +      +
Sbjct: 37  AVVKANGYGHGAVETAEAAVAGGASGFCVSNLDEGVELREAGFTQPILILNMVPYDALAL 96

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYA--LQVDTGFNRLGL----SLQEALDFT 146
               +L     +   L   + ++  G +  P +  L+ DTG  R+G      ++EA  F 
Sbjct: 97  AVAHDLSVTAGTREWLQVAAAILEEGKLEMPLSIHLKADTGMGRIGFCTPEEVKEAAAFI 156

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILL 204
             S   ++ +   + +H + AD P      +Q ERF  ++     +     +++S+  L 
Sbjct: 157 RES---RVLEWEGLFTHFSTADQPDDTYWKLQKERFMEVLKKLPELPRYVHVSNSATALW 213

Query: 205 GPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
                  + R G+++YG       + + +P+Q  +   + +I ++K  AGE + YG    
Sbjct: 214 HDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSELIQVKKLPAGEGIGYGETYI 273

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
                 I    IGYADG+   + G                ++G     +G++ MD  M  
Sbjct: 274 TPEAEWIGTIPIGYADGWLRKMQGFSL------------LVEGNYCETIGRVCMDQLMIR 321

Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +       VG  + + G     +I + DVA   GT +Y++   +G R  + Y
Sbjct: 322 LPQEFP--VGTKVTLIGKNADKEITMQDVADQLGTIHYEVACGLGQRIPREY 371


>gi|284992829|ref|YP_003411383.1| alanine racemase [Geodermatophilus obscurus DSM 43160]
 gi|284066074|gb|ADB77012.1| alanine racemase [Geodermatophilus obscurus DSM 43160]
          Length = 378

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 120/260 (46%), Gaps = 30/260 (11%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLI--ISHLACADDPSSHVNSVQLERF 182
           L  DTG +R G +  +       +   +  G+++++   SH+A AD P+      Q+  F
Sbjct: 126 LFADTGLSREGATEADWPGLVAAAARAQDDGEVAVVGLWSHMAYADAPTHPTIGAQVRVF 185

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQ 233
              ++  +     G    LA+S+  +  P+  + + RPGI++YG    G D    +H ++
Sbjct: 186 EEAVAIARAAGLTGARLHLANSAATVALPDTWYDMVRPGIAVYGLDPLGGDP--AAHGLR 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  AR  L ++  AG  VSYG       ++ + +  +GYADG P          +P 
Sbjct: 244 PAMTVRARAALTKRVPAGAGVSYGHTYFPESETTLLLVPVGYADGVPRAA----GNRAPV 299

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
           +  G    I        G++ MD  + D+ D+  +  GD + ++GP    +    D A A
Sbjct: 300 LAAGAHRTIA-------GRVCMDQFVLDVGDA-EVRAGDEVVLWGPGDRGEPTAQDWADA 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             + +Y+L+ RIG R+ + Y
Sbjct: 352 VDSIHYELVTRIGGRFTRRY 371


>gi|282934109|ref|ZP_06339388.1| alanine racemase [Lactobacillus jensenii 208-1]
 gi|281301856|gb|EFA94121.1| alanine racemase [Lactobacillus jensenii 208-1]
          Length = 337

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 144/353 (40%), Gaps = 37/353 (10%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF 95
           +K NAYG G  K+A      G + F V  ++E  +LR  +    I VL G+ P  E  I 
Sbjct: 1   MKANAYGHGAVKVAKMAARNGAEGFCVAVLDEAFELRDSSIVDPILVL-GVTPANEACIA 59

Query: 96  DTNLIPVISSVPQLTFYSK----LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
             + I +  + P L +       L    +     L +D+G  R+G S  +      N F 
Sbjct: 60  AAHNISL--TAPSLEWLEAADKALAKKDMVLKIHLAIDSGMGRIGFSEDQEF-IAANEFL 116

Query: 152 KKLGQLSL--IISHLACADDPSSHVNSVQLERFRTL--ISHYKGIEASLASSSGILLGPN 207
           +      +  + +H A AD   SH    Q++RF  L  I   K     +A+++  +   N
Sbjct: 117 RNSTHFIVEGMFTHFASADSRDSHYFDYQVKRFNHLKNILSIKPKWIHVANTASSIFDKN 176

Query: 208 YHFQLTRPGISLYGGTDKINKSHP-------MQTVVTAEARIILIRKALAGELVSYGGQK 260
            H  + R GI LYG     N + P       ++  ++  + +  ++K  +G  + YG   
Sbjct: 177 IHSDIVRFGIGLYGLNPSSNPASPDLESEINLKPALSLVSELSFVKKVHSGYGIGYGSTY 236

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
               D  I    +GYADG    LSG             K  +  +  PI+G+I MD  M 
Sbjct: 237 VADSDQWIGTVPVGYADGVIRKLSGF------------KIKVGAHYCPIVGRICMDQLMV 284

Query: 321 DITDSLSIEVGDYIQIFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
            + + +   VG  + I+  + +    +   A    T +Y+L   +  R  + Y
Sbjct: 285 LLPEKMP--VGTKVVIYSNNPEDPNFIKKAADYVDTIHYELACLLSDRLPRIY 335


>gi|299144129|ref|ZP_07037209.1| alanine racemase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518614|gb|EFI42353.1| alanine racemase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 387

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 31/345 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L  L  N + + N +  +A   +VVK NAYG G  KI   L   G+  F V ++ E
Sbjct: 9   LEINLDYLIENINKIRNNVREDAEIISVVKSNAYGFGALKIVEILRENGINFFAVATMSE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVI---SSVPQLTFYSKLMSCGVSHP 123
            + +R      ++ +L G  P     +  + N+   I    S   L   +K  +   +  
Sbjct: 69  AIAIRKKFKDVKLLIL-GYTPDYLMNVAVENNITLAIYNYESARTLNEIAKSQNKTATIH 127

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            AL  DTG NR+G  ++ ++++        K   +  + SH A AD  + +    Q   F
Sbjct: 128 IAL--DTGMNRIGFKNIDDSIEDIKKISKFKNIYIEGVFSHFAAADTNAEYTKR-QFNIF 184

Query: 183 RTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQ 233
           + +    +  + ++      +SS IL    Y     RPGI  YG T+ I   +     ++
Sbjct: 185 KNVTDILEKNKINIPIKHINNSSAILNYNEYSLDAVRPGIIQYGSTEGIKTKYKELNNVK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +   +A++  ++    GE VSYG   + + ++ IA   +GY+DG    LSG        
Sbjct: 245 YIGQIKAQVSNVKIVSKGEKVSYGLTYETSTETKIATIPLGYSDGILRQLSG-----KID 299

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           V + GK   +      +G+I MD  M D++  +   +GD + I G
Sbjct: 300 VLVSGKRCRQ------IGRICMDQMMVDVS-GVDCNIGDEVVILG 337


>gi|257887884|ref|ZP_05667537.1| alanine racemase [Enterococcus faecium 1,141,733]
 gi|257823938|gb|EEV50870.1| alanine racemase [Enterococcus faecium 1,141,733]
          Length = 373

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 149/352 (42%), Gaps = 33/352 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK N YG G  + A A    G   F V++++EGV+LR       I +L  +      +
Sbjct: 37  AVVKANGYGHGAVETAEAAVAGGASGFCVSNLDEGVELREAGFTQPILILNMVPYDALAL 96

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYA--LQVDTGFNRLGL----SLQEALDFT 146
               +L     +   L   + ++  G +  P +  L+ DTG  R+G      ++EA  F 
Sbjct: 97  AVAHDLSVTAGTRGWLQVAAAILEEGKLEMPLSIHLKADTGMGRIGFCTPEEVKEAAAFI 156

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILL 204
             S   ++ +   + +H + AD P     ++Q ERF  ++     +     +++S+  L 
Sbjct: 157 RES---RVLEWEGLFTHFSTADQPDDTYWNLQKERFMEVLKKLPELPRYVHVSNSATALW 213

Query: 205 GPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
                  + R G+++YG       + + +P+Q  +   + +I ++K  AGE + YG    
Sbjct: 214 HDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSELIQVKKLPAGEGIGYGETYI 273

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
                 I    IGYADG+   + G                ++G     +G++ MD  M  
Sbjct: 274 TPEAEWIGTIPIGYADGWLRKMQGFSL------------LVEGNYCETIGRVCMDQLMIR 321

Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +       VG  + + G     +I + DVA   GT +Y++   +G R  + Y
Sbjct: 322 LPQEFP--VGTKVTLIGKNADKEITMQDVADQLGTIHYEVACGLGQRIPREY 371


>gi|309777378|ref|ZP_07672339.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914919|gb|EFP60698.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 398

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 164/390 (42%), Gaps = 50/390 (12%)

Query: 10  KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEE 67
           +++L  L  N   + AL     +  +V+K + YG G  ++A  + +    D+F V S  E
Sbjct: 22  QVNLQQLLENTKKVKALLKPQTKLLSVLKADGYGHGAVQVARTIEDES--DWFAVASFYE 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH----- 122
             +LR +     I V           + D+++   +      +  S   +  ++H     
Sbjct: 80  AKELREHGITKPILVF--------GFLDDSHVEEAVQRDITCSALSYEYAMHLAHLCEQK 131

Query: 123 ----PYALQVDTGFNRLGLS-----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                  +++DTGF+RLG+      LQEA +     +  +   ++ I +H + A    + 
Sbjct: 132 KLRLSMHIKLDTGFHRLGIDCDENRLQEAYEEVRQLYETEALHITGIYTHFSTAGSKVAQ 191

Query: 174 VNSV---QLERFRTLISHYK------GIEASLASSSGILLGPNYHFQLTRPGISLYG-GT 223
             +    Q + F  ++   K      GI     +S   L  P  H  + R G+ LYG G+
Sbjct: 192 DEAFLKRQYQLFCEILQCLKEDQIDPGIR-HCCNSKATLTNPEMHLDMVRVGLYLYGLGS 250

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           D   +   ++ +V  +ARI  IR+   GE + Y       +   I V ++G+ADGY   L
Sbjct: 251 DADIEYLKLKPIVNWKARIYAIREVAQGEGIGYSRTFITPKPMRIGVVSLGFADGYARCL 310

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
                  S  V++     + G    ILGKI MD+ M D+TD     V D + + G D   
Sbjct: 311 YA-----SNKVYV----LVHGKKTRILGKICMDVMMIDLTDIPEAVVNDTVTVLGCDGEQ 361

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I  + +   +G T  ++   +G R  + Y
Sbjct: 362 HISANLLGKETGGTAVEITCGMGKRVKRVY 391


>gi|332639567|pdb|3MUB|A Chain A, The Crystal Structure Of Alanine Racemase From
           Streptococcus Pneumoniae
 gi|332639568|pdb|3MUB|B Chain B, The Crystal Structure Of Alanine Racemase From
           Streptococcus Pneumoniae
          Length = 367

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 164/378 (43%), Gaps = 43/378 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L A++ N   M A +       AVV  NAYG G   +A A+ +  V  F V++++E +
Sbjct: 13  IHLGAIRQNIQQMGAHIPQGTLKLAVVXANAYGHGAVAVAKAIQD-DVDGFCVSNIDEAI 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123
           +LR       I +L G+   +   +   +D  L     +V  L +   L+   V      
Sbjct: 72  ELRQAGLSKPILIL-GVSEIEAVALAKEYDFTL-----TVAGLEWIQALLDKEVDLTGLT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L +D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF+
Sbjct: 126 VHLXIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERFK 185

Query: 184 TLISHYKGI-EASLASSSGILLGPNYH----FQLTRPGISLYGGTDK---INKSHPMQTV 235
           T+++  K + E   AS+S   L   +H    F   R G ++YG       ++  + +   
Sbjct: 186 TILASMKEVPELVHASNSATTL---WHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +         SV 
Sbjct: 243 LTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF------SVL 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
           + G+        PI+G+++MD     +     +  G  + + G     +I    VA    
Sbjct: 297 VDGQA------CPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRV 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++  +  R  + Y
Sbjct: 349 TINYEVVCLLSDRIPREY 366


>gi|325125145|gb|ADY84475.1| Ala racemase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 376

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 141/328 (42%), Gaps = 34/328 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+L A+K N     A L    +   VVK NAYG G  ++AP +  AG   F V  ++E
Sbjct: 11  LHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGAARLAPVMEEAGADGFCVAMLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSK-LMSCGVSHPYA 125
           G++LR       I VL G+ P +E  +   N I + +SS+  L    K L    +     
Sbjct: 71  GLELRRAQIVKPILVL-GLQPAEEAALAAANDISLPVSSLDWLKKAEKVLRKEDLQLKIH 129

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLII----SHLACADDPSSHVNSVQLE 180
           L +D+G  R+G S  E  DF   + N+ L G  +  +    +H A AD   +     Q++
Sbjct: 130 LAIDSGMGRIGFSEDE--DF--KAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHP 231
           RF+ + S    K     + +++  L   +    + R GI LYG       G+  +  +  
Sbjct: 186 RFKHMESLLTVKPKWIHVDNTAASLFDKDVASDIVRFGIGLYGLNPSSAPGSRDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTM 319
                  K  +     PI+G++ MD  M
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFM 321


>gi|116619014|ref|YP_819385.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097861|gb|ABJ63012.1| Alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 370

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 158/369 (42%), Gaps = 41/369 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL++  +A+++N  ++  +SG  +    VK NAYG G   +A A    G+    V  ++E
Sbjct: 10  RLEVSKSAVEHNITTVKNVSGADKVFLTVKSNAYGFGLIPMAQAAVAGGIYGLGVAVLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL---MSCGVSHPY 124
            + LR     A I +L GI   Q K +    +  ++++V  L +  K    ++     P 
Sbjct: 70  AIALRHERITAPILIL-GI--SQVKYVELMAVQHIMATVVSLDWLEKAEHQLTGEQRLPV 126

Query: 125 ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            L +DTG  R+G     +L +A+ F  +  +K   +   + +H A +D   +     QL 
Sbjct: 127 TLGIDTGMGRIGFRDRETLSKAIQFVLDHADKF--EYVGLSTHFAESDSSDTRYFQKQLT 184

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYG---GTDKINKSHPM 232
           R+  L       +    ++SG  +   YH      ++ R G  LYG      ++     +
Sbjct: 185 RWHQLTDDLPKPKYYHVANSGAAM---YHAEEVPHEVVRVGTVLYGIEPSRGELADGRNL 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+   + +  +++  AGE +SY  +   T++  I    IGY DG+   L G       
Sbjct: 242 KPVMALRSEVNFVKRLPAGEGISYSHKYTTTQNEWIGTVPIGYGDGWLRKLMGF------ 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL----DDVAL 348
                 K  I G   PI+G++ MD  M  +        G  +   G D  L    +DVA 
Sbjct: 296 ------KVIIDGQYAPIVGQVAMDQLMIRLPREYP--EGTTVTFIGQDGDLENTIEDVAQ 347

Query: 349 ASGTTNYDL 357
            +G   +++
Sbjct: 348 FAGLAPWEI 356


>gi|295425675|ref|ZP_06818362.1| alanine racemase [Lactobacillus amylolyticus DSM 11664]
 gi|295064691|gb|EFG55612.1| alanine racemase [Lactobacillus amylolyticus DSM 11664]
          Length = 376

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 144/337 (42%), Gaps = 34/337 (10%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++L A+K N  + M  L    +  AVVK N YG G   +A     AG   F V  ++E
Sbjct: 11  VRVNLGAIKQNIDNEMKHLRPGQKLFAVVKANGYGHGAVPVAKVAEKAGASGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNL-IPVISSVPQLTFYSKLMSCGVSHPY 124
           G++LR       I VL  + P    I  + D +L +P +  + Q   Y K  +  +    
Sbjct: 71  GLELRKADIVKPILVLGVVSPEYAPIAAVNDISLTVPNLKWLKQAEKYLKKENLQLK--I 128

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
            L +D+G  R+G S  +      N F +K     +  + +H A AD         Q+ +F
Sbjct: 129 HLGIDSGMGRIGFSEDDEF-IAANKFLEKNDSFFVEGMFAHFASADSSDDSYFKKQVAKF 187

Query: 183 R----TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP------- 231
           +     L  H K I   +A+++  +   + H  L R GI +YG     N   P       
Sbjct: 188 KHMQDLLTVHPKWIH--VANTAASIFDKDIHSDLVRFGIGIYGLNPSSNPDSPDLKADIA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  ++    G+ V YG       D++I    +GYADG+     G      
Sbjct: 246 LKPALSFVSELTHVKTIHKGDGVGYGSTFVADHDTIIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
             V +G +        PI+G++ MD  M ++ + + +
Sbjct: 301 -KVKVGDQ------YCPIVGRVCMDQFMVEMPEKMPV 330


>gi|262282055|ref|ZP_06059824.1| alanine racemase [Streptococcus sp. 2_1_36FAA]
 gi|262262509|gb|EEY81206.1| alanine racemase [Streptococcus sp. 2_1_36FAA]
          Length = 368

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 158/385 (41%), Gaps = 57/385 (14%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL+A+  N   + A L  +    AVVK NAYG G   ++  + +  V  F V++++E +
Sbjct: 13  VDLSAIHFNIQQLKAHLPQDVEKWAVVKANAYGHGAVVVSSYIDDI-VDGFCVSNIDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP------VISSVPQLTFYSKLMSCGVSHP 123
           +LR      +I +L     G   I     ++P      +  +V  L +   L + G+S  
Sbjct: 72  ELREGGLDKKILIL-----GVSAI----EVVPLAIEHKITLTVASLEWLDLLEASGLSLQ 122

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L+VD+G  R+G    ++L    N       Q+  I +H A AD+  +        
Sbjct: 123 GLVVHLKVDSGMGRIGFRDSQSLQIAINRLQSAGVQVEGIFTHFATADEADA-------S 175

Query: 181 RFRTLISHYKGIEASLASSSGILLGPN-----YH----FQLTRPGISLYG---GTDKINK 228
           +F   ++ +KGI A L +   I+   N     +H        R G  +YG       +  
Sbjct: 176 KFEEQLACFKGILAELDALPPIIHASNSATSLWHADTVMNAVRLGDIIYGLNPSGSALEL 235

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
            + ++  ++  + ++ +++  AG  V YG          I    +GYADG+   + G D 
Sbjct: 236 PYDIKPALSLVSELVHVKEVEAGADVGYGATYTADEGQFIGTIPLGYADGWTRDMQGFDV 295

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344
                        I G   PI+G+++MD     +     +  G  +   G      I   
Sbjct: 296 ------------LIDGQRCPIVGRVSMDQITVRLPKKYPL--GTPVVFIGKSGTESISAT 341

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           DVA   GT NY+++  I  R  + Y
Sbjct: 342 DVAEKRGTINYEVVCLISDRVPRIY 366


>gi|318081809|ref|ZP_07989118.1| alanine racemase [Streptomyces sp. SA3_actF]
          Length = 285

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 28/260 (10%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACADDPSSHVNSVQLERF 182
           L+ DTG  R G    +      N+   +   L  ++   SH ACAD+P     + QL  F
Sbjct: 35  LKADTGLGRNGCQPADWPALVGNALALQAEGLVRVVGLWSHFACADEPGHPSIAAQLTLF 94

Query: 183 RTL--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQ 233
             +  ++   G+ A    +A+S   L  P  H+ L RPGI++YG     T   +    ++
Sbjct: 95  EEMTGLAARLGVRAEVRHIANSPATLSLPESHYDLVRPGIAMYGLSPSPTMGTHTDFGLR 154

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+   A + L+++   G  VSYG       D+ + +  +GY DG P   SG        
Sbjct: 155 PVMRLVAPLALVKRVPGGHGVSYGHLYVTPGDTTLGLVPLGYGDGIPRHASG-------- 206

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
               G   + G    + G+I MD  + D+        G    +FGP    +   +D A A
Sbjct: 207 ---SGPVLVNGKWHTVAGRIAMDQFVVDLGGDTPAP-GSEAVLFGPGDRGEPSAEDWARA 262

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + +  Y+++ RIG R  + +
Sbjct: 263 ADSIVYEIVTRIGARVPRVH 282


>gi|306820851|ref|ZP_07454474.1| alanine racemase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551123|gb|EFM39091.1| alanine racemase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 371

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 166/374 (44%), Gaps = 37/374 (9%)

Query: 15  ALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +L N  H++N      S      AVVK +AYG G  +++  +    V  F V++ +E ++
Sbjct: 14  SLSNILHNINEFKKCKSKKLNICAVVKADAYGHGSVEVSKFI-EQYVDYFAVSTGDEAIE 72

Query: 71  LRLYTPQARIFVL-YGIHPGQEKII-----FDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           LR    +  I +L Y      E +I     F    I + S++ ++   + LM+       
Sbjct: 73  LRNSQIKKPILILGYVFDNEVENLIRSDVEFTVYNIKIASTINKIAKKNNLMA-----KV 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERF 182
            +++DTG +R+G   Q+       + N  L  + ++   SH + A++  + +N VQ E F
Sbjct: 128 HIKLDTGMSRIGFLSQDNYVEEIKTVNN-LSNIRIVGCFSHFSNAEETKNVINEVQYELF 186

Query: 183 RTLISHYKGIEASLA----SSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVV 236
           + +    +     L     S+S      NY   + R GI +YG +  D  ++   ++  +
Sbjct: 187 QMMCKKIESENIDLGIKHISNSAASEKNNYDLDMVRLGIGMYGYSYNDVKDEKLDLKPAM 246

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             E+ I  I+    G  VSY G+  L  D  IA   IGYADG   +LS    ++   V  
Sbjct: 247 KLESLISNIKLLKKGCKVSYSGKYTLEEDEWIATIPIGYADGISRSLS---CKNFDVVLD 303

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD-DVALASGTTNY 355
            G   IKG  V   G I MD  M  +   ++I  G  + IFG D     ++A  + T  Y
Sbjct: 304 NG---IKGISV---GNICMDQMMIKLPQEVAI--GTKVNIFGYDNDSGYNIAKLADTIIY 355

Query: 356 DLLVRIGTRYAKFY 369
           +++  I  R  + Y
Sbjct: 356 EIVCGINKRVKREY 369


>gi|301167975|emb|CBW27561.1| alanine racemase [Bacteriovorax marinus SJ]
          Length = 375

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 161/381 (42%), Gaps = 35/381 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP-ALYNAGVQDFFVTSVEEGV 69
           I    L+NN+  +  +  + +   +VK NAYG G   I   ++   G+ +F   S+ E +
Sbjct: 9   ISFEKLENNYKKLKEICVDNKIIFMVKANAYGHGVIPIVRHSVEKLGITEFGCASLGEAL 68

Query: 70  KLR--LYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            LR  LY  +  I+V   +        +I  +  +IPVIS+   L F         + P 
Sbjct: 69  LLREELYDLEFEIYVFSDVQVELRECAEIYLNRRIIPVISNRDDLDFILNSREFE-NFPL 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP--SSHVNSVQLERF 182
            ++ +TG NRLGL + +  +   +        +  +++HL+ +  P   +  N +Q E F
Sbjct: 128 FIKFNTGMNRLGLEMDKVDEVIRSIRVSGRKSIYHLMTHLSSSSLPIKKNKRNIIQFENF 187

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----- 232
             +   +   GIE    S+A+S  I  G        RPG+ +YG +  + +   +     
Sbjct: 188 EKIKKAFSDAGIEVERTSIANSGAIEQGAGLGETHVRPGLMMYGPSSMLPQYSDLSLWSG 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + +   E  +I I     G+ V YG     ++   +A+ A+GY DG+     G    H  
Sbjct: 248 EIISKLETYVISIFDVEKGQPVGYGATPCPSKGK-VAIVALGYGDGFTTRYIGTHLYHKD 306

Query: 293 SVFLGGKGFIKGYMVPILGKITMDM--TMFDITDSLSIEVGDYIQIFGPDI-KLDDVALA 349
                    IKG    ++G++ MDM    FD      ++VGD   ++     +  +    
Sbjct: 307 ---------IKG---KVVGRVNMDMAQVFFDENSLPDLKVGDSFTLWDHSAERFAEFCKE 354

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +    Y++ + I  R  K Y+
Sbjct: 355 AKIIPYEVFIGITQRVPKIYS 375


>gi|89899300|ref|YP_521771.1| alanine racemase [Rhodoferax ferrireducens T118]
 gi|122480109|sp|Q221R3|ALR_RHOFD RecName: Full=Alanine racemase
 gi|89344037|gb|ABD68240.1| alanine racemase [Rhodoferax ferrireducens T118]
          Length = 374

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 169/381 (44%), Gaps = 41/381 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++  I   AL++N       + +A+  A+VK NAYG G E++   L  A    F +  ++
Sbjct: 5   IQATIHTAALRHNLARARLAAPDAKVWAIVKANAYGHGIERVFEGLRAA--DGFALLDLD 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++R    +  I +L G+   ++ ++    +L   +    Q+   +      V+    
Sbjct: 63  EAQRVRALGWRGPILLLEGVFELRDLELCSRLDLWHTVHCDEQIDMLAS-HKTKVAQRVF 121

Query: 126 LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++++G NRLG + Q     +T  +   ++ ++SLI +H + AD   +   + Q+  F  
Sbjct: 122 LKMNSGMNRLGFTPQRYRAAWTRLNALPQVDEISLI-THFSDAD--GARGITEQMAVFAE 178

Query: 185 LISHYKGIEASLASSSGILL-----GPNYHF---QLTRPGISLYGGTDKINKSHP----M 232
           +     G E +L++S+  LL      P   F      RPGI++YG      +       +
Sbjct: 179 VTRDLPG-ERTLSNSAATLLHTPARQPGDGFVASDWVRPGIAIYGSAPDFPQHSATDWGL 237

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  +T  A+II  +    G  V YG      +   + V A GYADGYP           P
Sbjct: 238 QPSMTLTAKIIATQTVDTGASVGYGSTFVADKPIQVGVVACGYADGYP--------RLCP 289

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS----IEVGDYIQIFGPD-----IKL 343
           +   G    + G     +G+++MDM   D++   +    + +G  + ++G       + +
Sbjct: 290 T---GTPVLVNGIRTRTVGRVSMDMLAVDLSAVTAAGGQVGIGSEVTLWGRAANGLVLGI 346

Query: 344 DDVALASGTTNYDLLVRIGTR 364
           D+VA  +GT  Y+L+  +  R
Sbjct: 347 DEVAQPAGTVGYELMCALAPR 367


>gi|315082997|gb|EFT54973.1| alanine racemase [Propionibacterium acnes HL027PA2]
          Length = 375

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 158/376 (42%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I       P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGIPLPILKPPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT 
Sbjct: 297 GHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  +++
Sbjct: 357 SYEITCAISKRVDRYW 372


>gi|44805037|gb|AAS47779.1| racemase [Clostridium innocuum]
          Length = 383

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 172/398 (43%), Gaps = 49/398 (12%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           + SN    L+IDLT + +N   +  L    ++  A+VK N YG G  + +  +   G+  
Sbjct: 5   LKSNTPSWLEIDLTRISHNIKEVQKLIPSTSKIMAIVKANGYGHGDVECSRMMEQQGIDF 64

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLM 116
           F V+SV+EGV+LR    Q+ I VL    P     + + +LI  + S     +L  Y+K  
Sbjct: 65  FGVSSVDEGVRLRENGIQSPILVLGYTPPVHFHYLNEASLIQTLVSKEYAEKLNAYAKEQ 124

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-----SLIISHLA---CAD 168
           +  V      +V+TG +R+G+S    +    +  +K L +L     S I SH +   C D
Sbjct: 125 NVVVK--AHAKVNTGMSRIGIS--HRIMHIISRISKALVRLKHLNVSGIFSHFSVSDCLD 180

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT-------RPGISLYG 221
           + +    + Q+  F  +++  +    +        L   ++F+L+       RPG+   G
Sbjct: 181 EENCAFTNHQIALFERVLADLRPEGLTPVQRICRQL---WNFKLSEPALDYVRPGLLWMG 237

Query: 222 GTDKINKSHPMQTVVTAEARIILIRKALAGELVS---YGGQKKLTRDSL---IAVAAIGY 275
               ++         +      +  K   G+  S   YG  +   +  +   +A  A+GY
Sbjct: 238 VPAMMHWQFARHRSFSPHG---MEGKCFPGKGYSARCYGQLRPSFQAEVCTRVATLAVGY 294

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335
           ADG+P ++S            G    + G  VPI+G I MD  M DIT    +  GD   
Sbjct: 295 ADGFPRSVSN----------QGACVLLHGRRVPIIGNICMDQMMVDITGLDGVSEGDVAT 344

Query: 336 IFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + G D    + +D+++  + T N + L  I  R  + Y
Sbjct: 345 LIGCDGDEVLSVDELSRLAHTINNETLCWISQRVPRIY 382


>gi|330829095|ref|YP_004392047.1| alanine racemase [Aeromonas veronii B565]
 gi|328804231|gb|AEB49430.1| Alanine racemase [Aeromonas veronii B565]
          Length = 408

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 32/345 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L++DL A ++N  ++    G+   +  A++K +AYG G + + P++  A +    + S E
Sbjct: 44  LEVDLGAFEHNIQTLKDRLGDKGPQICAIMKADAYGHGIDLLVPSVVKANIPCIGIASNE 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E    R      R+  +    P + +      +  +I S   L     +      H   +
Sbjct: 104 EARVAREKGFTGRLMRVRAATPDEVEQALPYKMEELIGS---LVSAQGIADIAQRHHTTI 160

Query: 127 QVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSL-------IISHLACADDPSSHVNSVQ 178
            V    N  G+S +  +D    ++    L  L L       I++H    +     +   Q
Sbjct: 161 PVHIALNSAGMS-RNGIDLRLADAKQDALAMLKLKGITPVGIMTHFPVEEKEDVKMGLAQ 219

Query: 179 LERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +     +     ++ S      A+S   L  P+ +F + RPG  LYG  D I      +
Sbjct: 220 FKLDSQWLLEAGKLDRSKITIHAANSFATLAVPDAYFDMVRPGGLLYG--DSIPSHTEYK 277

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  + ++  +    AG  V Y     L RDS +A   +GY+DGY  +LS         
Sbjct: 278 RVMAFKTQVASVNHYAAGNTVGYDRTFTLKRDSWLANLPLGYSDGYRRSLSN-------K 330

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            ++     I+G  VP++GK +M+  M D+TD   ++ GD + +FG
Sbjct: 331 AYV----LIQGQKVPVVGKTSMNTIMVDVTDLKGVKPGDEVVLFG 371


>gi|157150127|ref|YP_001449734.1| alanine racemase [Streptococcus gordonii str. Challis substr. CH1]
 gi|189027393|sp|A8AVC4|ALR_STRGC RecName: Full=Alanine racemase
 gi|157074921|gb|ABV09604.1| alanine racemase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 368

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 159/379 (41%), Gaps = 45/379 (11%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL+A+  N   + A L  +    AVVK NAYG G   ++  + +  V  F V++++E +
Sbjct: 13  VDLSAIHFNIEQLKAHLPQDVEKWAVVKANAYGHGAVAVSSYIDDI-VDGFCVSNIDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP---YAL 126
           +LR      +I +L G+   +   +   N I +  +V  L +   L +  +S       L
Sbjct: 72  ELREGGLDKKILIL-GVSAIEVVPLAIQNKITL--TVASLEWLDLLEASSLSLQGLVVHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VD+G  R+G   ++ L    N       Q+  I +H A AD+  +        +F   +
Sbjct: 129 KVDSGMGRIGFRDRQPLQEAINRLQVAGVQVEGIFTHFATADEADA-------SKFEEQL 181

Query: 187 SHYKGIEASLASSSGILLGPN-----YH----FQLTRPGISLYG---GTDKINKSHPMQT 234
           + +KGI A L +   I+   N     +H        R G  +YG       +   + ++ 
Sbjct: 182 ACFKGILAELDALPPIIHASNSATSLWHTDTVMNAVRLGDIIYGLNPSGSVLELPYDIKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  + ++ +++  AG  V YG          I    +GYADG+   + G D       
Sbjct: 242 ALSLVSELVHVKEVEAGADVGYGATYTADEGQFIGTIPLGYADGWTRDMQGFDV------ 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
                  I G   PI+G+I+MD     + +   +  G  +   G      I   DVA   
Sbjct: 296 ------LIDGQRCPIVGRISMDQITVRLPEKYPL--GTPVVFIGKSGTESISATDVAEKR 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++  I  R  + Y
Sbjct: 348 GTINYEVVCLISDRVPRIY 366


>gi|257870946|ref|ZP_05650599.1| alanine racemase [Enterococcus gallinarum EG2]
 gi|257805110|gb|EEV33932.1| alanine racemase [Enterococcus gallinarum EG2]
          Length = 373

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 159/377 (42%), Gaps = 36/377 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+K N  +  A L       AVVK N YG G  + A A    G   F V +V+EG+
Sbjct: 13  IDLKAIKENVENEVARLPKATDLFAVVKANGYGHGAIETATAALEGGASGFCVATVDEGI 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA--L 126
           +LR       I VL  +      ++   NL  PV ++       + L    V++P    L
Sbjct: 73  ELREAGFSEPILVLGIVSVADIGLLSYYNLSFPVSTNEWLQEAAAFLQKNPVTNPLKVHL 132

Query: 127 QVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +VDTG  R+G +S +E L        + L     + +H A AD         Q +RF+T 
Sbjct: 133 KVDTGMGRIGFISNEELLSAVKWLQEQSLFTWEGVFTHFATADQADDTYWQEQNQRFQTA 192

Query: 186 ISHYKGIEASL-ASSSGILLGPNYHFQ----LTRPGISLYG----GTDKINKSHPMQTVV 236
           ++    +   + A +S   L   +H +    + R GI++YG    GT  + +++P++  +
Sbjct: 193 LACLPELPRYVHAGNSATAL---WHAEAVGNMVRYGIAMYGLNPSGT-ALPETYPLKPAL 248

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + ++ ++    G  + YG      +   I    IGYADG+   + G           
Sbjct: 249 SLVSELVQVKLLEKGAGIGYGETYITPQAEWIGTVPIGYADGWLRKMQGFSL-------- 300

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G    I+G++ MD  M  +  S     G  + + G D    I +  VA    T
Sbjct: 301 ----LVAGEYCEIVGRVCMDQLMIRLPRSFP--AGTKVTLIGEDNGQCITMQKVAEQLET 354

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y++   +  R  + Y
Sbjct: 355 IHYEVACTLSARVPREY 371


>gi|171315773|ref|ZP_02905005.1| alanine racemase [Burkholderia ambifaria MEX-5]
 gi|171099072|gb|EDT43852.1| alanine racemase [Burkholderia ambifaria MEX-5]
          Length = 378

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 155/376 (41%), Gaps = 43/376 (11%)

Query: 12  DLTALKNNWHSMN--ALSGNARTAA-----------VVKDNAYGLGCEKIAPALYNAGVQ 58
           +L  L+  W  +N  A++ N   A            V K + +G G   +A    +AGV 
Sbjct: 10  ELRLLRPAWAEINRGAIAENLAVARSLVRDGVKVYFVCKGDGFGFGAATVARLAADAGVD 69

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            F V S EEG  +R       + +     P     +    L   I S+  L  + +    
Sbjct: 70  GFCVGSPEEGAAIRAAGINHEVLLFASTLPEDAARVASLGLTVTIQSMESLHAFVR---A 126

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G++    +++D GF R G    +  +       + + +L  I +HL+   D +  V   Q
Sbjct: 127 GIAVDAFVEIDPGFGRFGFLPSQWQEAFRALAAQSVVRLKGIYTHLSSPGDDT--VTGRQ 184

Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-INKSHPM 232
              F   +     S +  +   LASS  ++  P   ++   PG  LYG  D+   +  P+
Sbjct: 185 AGVFDAALADARASGFDDVTTMLASSRVMISHPELSYRAVDPGRLLYGALDREWMERVPL 244

Query: 233 QTVVTA-EARIILIRKALAGEL--VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           + ++ A  ARII +++  AG +  + Y    +L R   + V  IG+ DG           
Sbjct: 245 RPMLRAVRARIIHVQQHPAGSMLGIGYAAPIRLERAMRVGVVPIGFGDGL---------N 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
           H P +   G   ++G    +LG+ ++  T+ D+TD     +G  + + G D    I +D+
Sbjct: 296 HVPPL---GHVLVRGVQARVLGRRSLQHTVIDLTDLPDAGIGSVVTLVGEDGAERITIDE 352

Query: 346 VALASGTTNYDLLVRI 361
           +A        +LL R+
Sbjct: 353 LADTLKLPVMELLPRL 368


>gi|271962687|ref|YP_003336883.1| alanine racemase [Streptosporangium roseum DSM 43021]
 gi|270505862|gb|ACZ84140.1| Alanine racemase [Streptosporangium roseum DSM 43021]
          Length = 371

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 158/377 (41%), Gaps = 30/377 (7%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL+A+++N   +   +  A    VVK + YG G      A    G        + E +
Sbjct: 7   RVDLSAIRDNVALLGEHAPGAEIMVVVKADGYGHGMAACGRAALEGGATRLGTAYIREAL 66

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT--FYSKLMSCGVSHPYALQ 127
           +LR     A I   + I PG+         + + +  P L     +     GV+    L+
Sbjct: 67  ELRAAGVTAPILS-WIIPPGEPLDEAVGQGVELSAGTPALVDEIAAAAGRTGVAARVHLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRT 184
            DTG  R G +  +       +  ++     +++ + SH ACAD P       QL  F  
Sbjct: 126 ADTGLARGGAAPADWPALVDRAMARQFEGTIEVAGLWSHFACADIPGHPSVHAQLTAFDD 185

Query: 185 L--ISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVV 236
              I+   G   S     +A+S+  +L P  H+ + RPG++ YG +         ++  +
Sbjct: 186 ALAIAEKAGAGGSHVIRHIANSAATMLLPQAHYDMVRPGLATYGLSPVPELGGFGLRPAM 245

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  ARI L ++   G  VSYG      R++ + +  +GYADG           H+ +   
Sbjct: 246 TLVARIALAKRVPVGSGVSYGHLYVTERETTLGLVPLGYADGI--------LRHATNR-- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL----ASGT 352
             +    G    I G++ MD  + D+ D    E GD + +FG   + +  A     + GT
Sbjct: 296 -AEVLAGGRRRRIAGRVCMDQFVIDVGDDPLAE-GDEVILFGDGSRGEPTAQEWADSLGT 353

Query: 353 TNYDLLVRIGTRYAKFY 369
             ++++ RIG+R  + Y
Sbjct: 354 ITHEIVTRIGSRVPRVY 370


>gi|283457594|ref|YP_003362178.1| alanine racemase [Rothia mucilaginosa DY-18]
 gi|283133593|dbj|BAI64358.1| alanine racemase [Rothia mucilaginosa DY-18]
          Length = 437

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 181/407 (44%), Gaps = 66/407 (16%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   +  L G+    AV+K +AYG G   +A +   AG     V  V E ++
Sbjct: 27  IDLDALEHNVRRLKELIGDRVLIAVIKADAYGHGAYPVARSAIAAGADLLGVVHVNEALE 86

Query: 71  LR-----------LYTPQARIFVLYGIHPGQEKIIFDTN--LIPVISSVPQLTFYSKLMS 117
           LR           L+TP             QEKI    +   +  +++  + T    ++ 
Sbjct: 87  LRADGIDAPLMAWLHTPSTDFEAAL-----QEKIRLGVSGWDLEAVAAAAECTGERAIVH 141

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSL--IISHLACADDPSSHV 174
                   L+ DTG  R G +  +       + + +  G +++  I SHLA AD+P+   
Sbjct: 142 --------LKADTGLGRNGATAADWPALVARAASLEDAGLITVEGIFSHLAVADEPTRAE 193

Query: 175 NSVQLERFRTLISHYK--GIEA-------SLASSSGILLGPNYHFQL----TRPGISLYG 221
            + Q++   T ++  +  G++        S A+ +  L G +   +L     R G++LYG
Sbjct: 194 TAQQVDTLDTFVAQAREAGLDPKIVHLANSPATLTASLEGWDTEERLLGDGVRCGLALYG 253

Query: 222 GT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
            +   +   +   ++ V+T  + I  +++  AG+ VSYG +    + + +A+  +GYADG
Sbjct: 254 LSPLPEVTAEDLGLKPVMTVGSYIAAVKEVPAGQGVSYGLRYHTPKATTLALVPLGYADG 313

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVP---------ILGKITMDMTMFD-----ITD 324
            P       +E++P     G    +   VP         ++G+I MD  + D     ++D
Sbjct: 314 VPRI-----AENAPVRIYPGAQNAENGSVPNNAEGKTYRVVGRIAMDQMVVDLGEPGLSD 368

Query: 325 SLSIEVGDYIQIF--GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
                +G    +F  G +  +++ A A+ T NY+++ RI +R  + Y
Sbjct: 369 PALGYLGAPAILFGAGENPPVEEWADAAQTINYEIVTRISSRVERLY 415


>gi|313817562|gb|EFS55276.1| alanine racemase [Propionibacterium acnes HL046PA2]
          Length = 375

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 157/376 (41%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V  V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVAPVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I       P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGIPLPILNPPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + +HL  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT 
Sbjct: 297 GHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  +++
Sbjct: 357 SYEITCAISKRVDRYW 372


>gi|255326888|ref|ZP_05367964.1| alanine racemase [Rothia mucilaginosa ATCC 25296]
 gi|255296105|gb|EET75446.1| alanine racemase [Rothia mucilaginosa ATCC 25296]
          Length = 437

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 183/410 (44%), Gaps = 72/410 (17%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   +  L G+    AV+K +AYG G   +A +   AG     V  V E ++
Sbjct: 27  IDLDALEHNVRRLKELIGDRALIAVIKADAYGHGAYPVARSAIAAGADLLGVVHVNEALE 86

Query: 71  LR-----------LYTPQARIFVLYGIHPGQEKIIFDTN--LIPVISSVPQLTFYSKLMS 117
           LR           L+TP             QEKI    +   +  +++  + T    ++ 
Sbjct: 87  LRADGIEAPLMAWLHTPSTDFDAAL-----QEKIHLGVSGWDLEAVAAAAERTGERAIVH 141

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDF----THNSFNKKLGQLSL--IISHLACADDPS 171
                   L+ DTG  R G +   A D+       +  ++ G +++  I SHLA AD+P+
Sbjct: 142 --------LKADTGLGRNGAT---AADWPALVARAACLEESGLITVEGIFSHLAVADEPT 190

Query: 172 SHVNSVQLERFRTLISHYK--GIEA-------SLASSSGILLGPNYHFQL----TRPGIS 218
               + QL+   T ++  +  G++        S A+ +  L G +   +L     R G++
Sbjct: 191 RAETAQQLDTLDTFVAQAREAGLDPKIVHLANSPATLTASLEGWDTEERLLGDGVRCGLA 250

Query: 219 LYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275
           LYG +   +   +   ++ V+T  + I  +++  AG+ VSYG +    + + +A+  +GY
Sbjct: 251 LYGLSPLPEVTAEDLGLKPVMTVGSYIAAVKEVPAGQGVSYGLRYHTPKATTLALVPLGY 310

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP---------ILGKITMDMTMFD----- 321
           ADG P       +E++P     G    +   VP         ++G+I MD  + D     
Sbjct: 311 ADGVPRI-----AENAPVRIYPGAQNAEDGSVPNNTEGKTYRVVGRIAMDQMVVDLGEPG 365

Query: 322 ITDSLSIEVGDYIQIF--GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++D     +G    +F  G +  +++ A A+ T NY+++ RI +R  + Y
Sbjct: 366 LSDPALGYLGAPAILFGAGENPPVEEWADAAQTINYEIVTRISSRVERLY 415


>gi|114567922|ref|YP_755076.1| alanine racemase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338857|gb|ABI69705.1| Alanine racemase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 399

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 155/358 (43%), Gaps = 35/358 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID+ A+K N   + +L   +     V+K NAYG G   +A  LY  GV  F V+ + E
Sbjct: 10  LEIDIDAVKQNLEGVKSLLDSSVHLLVVLKANAYGHGAVNMARFLYQNGVDFFAVSFLSE 69

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLM---SCGVSHP 123
            ++LR    ++ I V   +    Q K     ++   ISS+    F S+L+   S  ++ P
Sbjct: 70  ALELRKAGIRSSILVFSPVVDEEQVKEAIKNHITLSISSL----FDSQLLNQVSERLNQP 125

Query: 124 YA--LQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  R G +  E +     S  +     +  I +H+A A   +      Q  
Sbjct: 126 LRVHLKVDSGLGRFGFTNIEEISTACQSLKENSCIYIEGIYTHMADAASGNPAYTEEQFR 185

Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
           RF  +++      YK      A+S+  L  P+ H    R G  + G     +   P++ +
Sbjct: 186 RFMEIVNKLVKAGYKIPLRHCANSAVFLKYPHMHLDAVRIGTLISGQYPVGDLPRPVELI 245

Query: 236 --VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE---H 290
                + +II ++   AG+ + Y     L  D+ IAV  +GY DG  L + G  +E    
Sbjct: 246 DPFRFKCKIISLKSLKAGDYLGYSRSYCLKEDAQIAVIPVGYMDGLGLNV-GNKAEGFID 304

Query: 291 SPSVFLGGKGF------------IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
              + L    F            I+  + P+ GK+ M M M +I   L + +GD ++I
Sbjct: 305 LLKILLKNIFFYYDLGRFKLQVKIRDSLYPVRGKVFMQMAMIEIPAGLDLSIGDEVEI 362


>gi|149194319|ref|ZP_01871416.1| alanine racemase [Caminibacter mediatlanticus TB-2]
 gi|149135494|gb|EDM23973.1| alanine racemase [Caminibacter mediatlanticus TB-2]
          Length = 331

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 156/363 (42%), Gaps = 71/363 (19%)

Query: 18  NNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76
           N ++++  +S  N    AV+KDNAYG G   I+  L   G++   V +++E   +R +  
Sbjct: 10  NLFYNLQKISSINPNIIAVIKDNAYGHGIISISKLLKEYGIKKVCVRNIDEANLVRGFFE 69

Query: 77  QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQVDTGFNRL 135
           +  IF      P     I   N    I+S+ QL            HPY  L++DTGF R 
Sbjct: 70  EILIFN----SPTNRGAI---NFSYTINSLTQLK--------KNRHPYIHLKIDTGFRRN 114

Query: 136 GLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----RTLISHYKG 191
           G+ L+  LD   +   KK  +L  + SH  CAD+       +Q ++F      ++   K 
Sbjct: 115 GI-LENELDEALDLIKKKEFELRGVFSHFCCADEFGCDT-FIQYDKFLKIKEKIVKFCKE 172

Query: 192 IEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            +       +A+S+ +   P +     RPGI++YGG D        + V++ EA ++ +R
Sbjct: 173 SKLKIPYFHIANSAALNKLP-HTLDYVRPGIAIYGGID------GYKPVMSLEADVVSVR 225

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAA--IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
             +  E    G  K    D  I ++   +GYADG P   +G   + + +           
Sbjct: 226 --VLDEKEGCGYNKTFMSDDKIKISTVDVGYADGIPYFRNGCKLKDTIA----------- 272

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV---ALASGTTNYDLLVRI 361
                LGKI+MD  +           G++ ++    I  DDV        T  YD+LV++
Sbjct: 273 -----LGKISMDYMIVK---------GEFKKV----IIFDDVKEFVKNFDTITYDILVKM 314

Query: 362 GTR 364
             R
Sbjct: 315 SPR 317


>gi|300724984|ref|YP_003714309.1| putative alanine racemase [Xenorhabdus nematophila ATCC 19061]
 gi|297631526|emb|CBJ92233.1| putative alanine racemase [Xenorhabdus nematophila ATCC 19061]
          Length = 410

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 161/356 (45%), Gaps = 43/356 (12%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           H+N ++  +I+ T  +NN H +   L+ N +  AV+K +AYG G   + P++   GV   
Sbjct: 40  HNNAWV--EINTTTFENNIHILQQKLNRNTKMCAVLKGDAYGHGIGLLMPSVIKTGVLCV 97

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119
            +TS EE   +R    + ++  +      + +     ++  +I  +      + L    G
Sbjct: 98  GITSNEEARIVRESGFKGQLIRIRTADVSEIESTLGYDMEEIIGDLAHAKTVADLAKKHG 157

Query: 120 VSHPYALQVDTGF-NRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLACAD---- 168
                 L ++TG  +R GL +      QEAL  T     K +G    I+SH A  D    
Sbjct: 158 KEIRVHLALNTGLMSRNGLEMKTEQGKQEALKMTQLPNLKLVG----IMSHHALTDLDAI 213

Query: 169 -DPSSHVNSVQLERFRTLI--SHYKGIEASLASSSGI--LLGPNYHFQLTRPGISLYGGT 223
            D   + N    E+   LI  ++ K  E +L +SS    +  P   F + R G +LYG  
Sbjct: 214 RDSIKNFN----EQTAWLIKAANLKRDEITLHASSSFASVSIPEAQFDMVRVGSALYG-- 267

Query: 224 DKINKSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             +  +HP  + ++  +  +  ++    G  VSY     L RDS +A   +G++DG+  +
Sbjct: 268 -ILTNTHPEFKPLIQVKTHVASVKSYPKGNGVSYNNTYILKRDSKLANLPVGFSDGFSSS 326

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           LS          ++     I G+  P++G ++M+  M D+TD   ++ GD + IFG
Sbjct: 327 LSN-------KAYV----LINGHRAPVVGSVSMNTVMADVTDLPEVKSGDEVVIFG 371


>gi|326333138|ref|ZP_08199387.1| alanine racemase [Nocardioidaceae bacterium Broad-1]
 gi|325949121|gb|EGD41212.1| alanine racemase [Nocardioidaceae bacterium Broad-1]
          Length = 394

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 172/386 (44%), Gaps = 48/386 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           IDL A++   H+++ L  + RT    VVK + YG G  +   A    G     V S +E 
Sbjct: 18  IDLAAIR---HNVSRLKEHLRTPIMMVVKADGYGHGLVQAGRAAREGGADWLGVASADEA 74

Query: 69  VKLRLYTPQARI--FVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYA 125
           + LR    + R+  +++    P ++ +  D ++     +V  L  F +   + G +    
Sbjct: 75  LALRAAGDEGRLLAWLIMPSEPAEDLVAADIDV--TAYTVADLEKFAAAGDALGRTPRVQ 132

Query: 126 LQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           L+VDTG +R G +  +  +    +   +  G + +  I SH + +++ +   +++Q + F
Sbjct: 133 LKVDTGLSRGGAAFADWGNLVARARILEAEGAIRVTGIWSHFSASENTADPASALQEKVF 192

Query: 183 RTL--ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---- 233
                ++   G+      LA+S+G LL P+    L R GI+ YG    I+ +  ++    
Sbjct: 193 GEALAVAEEAGLRPEVRHLANSAGALLRPSARLDLVRVGIATYG----IDPAPGVEGSPW 248

Query: 234 ------TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
                   +T  A + L+++  AG  VSY         + + +  +GYA+G         
Sbjct: 249 DELGLVPAMTVRAELALVKQIEAGAGVSYNHTWVAEEPTTVGLIPVGYAEGIQRRAG--- 305

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKL 343
             +  SV      ++ G   P+ G + MD  + D+ D+ ++E G  + ++G     +   
Sbjct: 306 --NRASV------WVDGARRPVRGTVCMDQIVVDLGDT-AVEPGAEVVLWGTGADGEPTA 356

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
            D A AS T  Y+++ RIG R  + Y
Sbjct: 357 QDWAEASETIAYEVVTRIGGRMKRRY 382


>gi|28189428|dbj|BAC56127.1| alanine racemase [Bifidobacterium bifidum]
          Length = 452

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 127/280 (45%), Gaps = 41/280 (14%)

Query: 126 LQVDTGFNRLGLS-------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           ++VD+GF R G +       L + +   H      +GQ S    HLA A+ P        
Sbjct: 157 VKVDSGFGRNGFTPAGFDAALAKLVPLAHEGVLHIVGQWS----HLAVAELPDVPEFVAS 212

Query: 179 LERFRTLISHY-KGIEAS--------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
            +R   L + + + +EA+        LA+++  L     HF++TRPGI LYG        
Sbjct: 213 TDRQIELFTEFTRCMEAAGIAPEISHLANTAATLNRSEIHFEMTRPGIGLYGYEPDPAMG 272

Query: 230 HP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            P    ++  +T +A++  ++   AG  VSYG       ++  A+  +GYADG   + SG
Sbjct: 273 TPREWHLKPAMTLQAQLGTVKDVEAGHGVSYGRTYLTPDNTSTAIVPLGYADGIHRSASG 332

Query: 286 LDSEHSPSVFLGGKGFIK------GYMVPILGKITMDMTMFDITDS---LSIEVGDYIQI 336
            D + +  V   G G ++        ++ + G++ MD  + D+  S   L +  GD +++
Sbjct: 333 FDMQGAKHVEKAG-GPVRVMTSAGPRLLHVCGRVCMDQFIVDLHGSAAELGVHEGDTVEL 391

Query: 337 FGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 392 FGPGRGEQYGEPTADDWARAADTISYEVFTCLRNRIPRLY 431


>gi|255030944|ref|ZP_05302895.1| hypothetical protein LmonL_20763 [Listeria monocytogenes LO28]
          Length = 199

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 19/204 (9%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 8   LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 67

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP--MQTVVTA 238
           +++  K     +  A+S+  LL P   F   R GIS+YG T   +I  S P  ++  +  
Sbjct: 68  ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPALAL 127

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              ++ +++   G+ VSYG     T    +A   IGYADG     SG        V +GG
Sbjct: 128 YTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFH------VLVGG 181

Query: 299 KGFIKGYMVPILGKITMDMTMFDI 322
           +      + PI+G++ MD T+  +
Sbjct: 182 E------LAPIIGRVCMDQTIIKL 199


>gi|319943626|ref|ZP_08017907.1| alanine racemase [Lautropia mirabilis ATCC 51599]
 gi|319742859|gb|EFV95265.1| alanine racemase [Lautropia mirabilis ATCC 51599]
          Length = 386

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 19/242 (7%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL-----E 180
           L+++TG NRLGL   +   +          +L  +++H A AD P   +  +        
Sbjct: 145 LKLNTGLNRLGLKPDDVDAYLTQVLATPGVRLRGMMTHFANADTPGGALQPLATFDAVAR 204

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTVVT 237
             +  +   + +E  +A+S+ +   P  +    RPGI+LYG +    +S     ++  + 
Sbjct: 205 AVQARLPAGQTLEHCVANSAALFTLPQAYRAWARPGIALYGASPFAGQSAASLGLRPAMQ 264

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               ++ +++   GE   YGG     +   + +   GYADGYP          +P+   G
Sbjct: 265 LTGNVLGVQQLTPGEATGYGGIFVAEQPVRVGIVNCGYADGYPRV--------APT---G 313

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     LG+++MDM   D+T       G  ++++G  + +D+VA ++GT  Y+L
Sbjct: 314 TPVVVDGVRTRTLGRVSMDMLAVDLTPIPDAGPGTPVELWGDAVSIDEVAESAGTLGYEL 373

Query: 358 LV 359
           + 
Sbjct: 374 MC 375


>gi|313765106|gb|EFS36470.1| alanine racemase [Propionibacterium acnes HL013PA1]
          Length = 375

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 158/376 (42%), Gaps = 32/376 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   K  ++  + + L  +D P  +     +++ F T +S
Sbjct: 132 DSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTPLPISDVPEGAEFTRREIDTFMTAVS 191

Query: 188 ----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVT 237
               H         ++SG +LG +     + R GI  YG       D+ +  HP  + ++
Sbjct: 192 LIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +  ++    G+ + YG     +  + IA   +GYADG    LS             
Sbjct: 251 ---HVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT 
Sbjct: 297 GHVLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++   I  R  +++
Sbjct: 357 SYEITCAISKRVDRYW 372


>gi|154267917|gb|ABS72053.1| VanTG-like protein [Ruminococcus gauvreauii]
          Length = 570

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 101/222 (45%), Gaps = 13/222 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL  LK+N  +++ A+    R  AVVK NAYG G  + A  L   GV  F V +++E
Sbjct: 348 IEVDLNNLKHNARTLSKAMPPGCRLMAVVKANAYGHGAFETAVCLEQIGVTSFAVATIDE 407

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ LR +  +  I +L    P + K +    LI  +   P   +  +L   G      ++
Sbjct: 408 GIALRRWGIRGDILILGFTDPSRAKELHRYRLIQTLIDAP---YAKRLARQGYIIRSHIK 464

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERFRT 184
           +DTG +RLG  + E  +      ++ L     I +HL  AD   +        Q E F  
Sbjct: 465 IDTGMHRLGFGVNERSEILRTVRSRNLNVCG-IYTHLCAADSLLEDDVKFTRRQTEVFFE 523

Query: 185 LISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYG 221
           L+   K  E +     + SS G+L  P       R GISLYG
Sbjct: 524 LLEWLKEQEVTIPDIHIQSSYGLLNYPELGCSYVRAGISLYG 565


>gi|183599355|ref|ZP_02960848.1| hypothetical protein PROSTU_02822 [Providencia stuartii ATCC 25827]
 gi|188021591|gb|EDU59631.1| hypothetical protein PROSTU_02822 [Providencia stuartii ATCC 25827]
          Length = 407

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 141/343 (41%), Gaps = 30/343 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I  +AL  N   + AL G+  +  AV+K +AYG     + P +    VQ   +T+ +E
Sbjct: 45  IEISRSALDFNIKKVQALLGDKSSLCAVLKGDAYGHDLTLVTPLMIENNVQCIGLTNNQE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH----P 123
             ++R    + R   L  +    E+ +       V   +  L    +L   G       P
Sbjct: 105 FKQVRELGFKGR---LMRVRNATEQEMAQATAYDVEELIGNLDMAQRLNDIGKKQNKVIP 161

Query: 124 YALQVDT-GFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
             L +++ G +R GL +  A          +L QL +  I+SH    D+     +  + +
Sbjct: 162 IHLALNSAGMSRNGLEVSHAQGLNDAKMIAQLPQLKVVGIMSHYPEEDEAQIRKDLAKFK 221

Query: 181 RFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
           +    +    G++       +A++   +  P     + R G   YG T     +   + V
Sbjct: 222 KQSQQVLDVTGLKREDVILHVANTYATITVPESWLDMVRVGGIFYGDT---VATKDYKRV 278

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ I  +     G  V Y     L RDS++A   +GYADGY    S           
Sbjct: 279 MTLKSNIASVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN---------- 328

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
             G   I G  VP+LGK +M+  M D+TD   ++ GD +  FG
Sbjct: 329 -AGHALINGQTVPVLGKTSMNTVMVDVTDLKQVQPGDEVVFFG 370


>gi|325121779|gb|ADY81302.1| alanine racemase [Acinetobacter calcoaceticus PHEA-2]
          Length = 430

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 151/360 (41%), Gaps = 34/360 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A ++N    N L +G  +   V+K NAYG   + + P++    V    +TS  E
Sbjct: 49  IEIDTQAFEDNIKRTNQLLNGKTQLCIVMKANAYGHSIDLLMPSVMKLNVSCIGITSNAE 108

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
              +R +  + +I  L      +       N+  ++ +  Q    SK       +  Y+L
Sbjct: 109 AAMVRKHGYKGKITRLRTATDSEIINAQALNIEELLGNYDQAARMSKWAEANNTTVHYSL 168

Query: 127 QVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQL-ERF 182
            +++G  +R GL +  AL         KL  L +  I++H A  D+        Q  E+ 
Sbjct: 169 ALNSGGMDRNGLEMSTALGKEQAVAITKLPHLKIDGIMTHYAVEDEKFVRERLAQFNEQT 228

Query: 183 RTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVVT 237
             LI   K     L    A+S   +  P  H  + R G  +YG       +HP  + ++ 
Sbjct: 229 AWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDF----PNHPEFKGMMA 284

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + +I  +   L    V Y     L RDS +A   +GY+DGY  + S             
Sbjct: 285 FKTQIAAVNNYLKDSTVGYDQTYTLKRDSKLANLPVGYSDGYRRSFSN------------ 332

Query: 298 GKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
            K F  I G   P++G+++M+  M D+TD    + GD + +FG     ++K  D+   +G
Sbjct: 333 -KAFVLINGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGRQGNAEVKTSDLTSLTG 391


>gi|293608485|ref|ZP_06690788.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829058|gb|EFF87420.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 430

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 151/360 (41%), Gaps = 34/360 (9%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A ++N    N L +G  +   V+K NAYG   + + P++    V    +TS  E
Sbjct: 49  IEIDTQAFEDNIKRTNQLLNGKTQLCIVMKANAYGHSIDLLMPSVMKLNVSCIGITSNAE 108

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
              +R +  + +I  L      +       N+  ++ +  Q    SK       +  Y+L
Sbjct: 109 AAMVRKHGYKGKITRLRTATDSEIINAQALNIEELLGNYDQAARMSKWAEANNTTVHYSL 168

Query: 127 QVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQL-ERF 182
            +++G  +R GL +  AL         KL  L +  I++H A  D+        Q  E+ 
Sbjct: 169 ALNSGGMDRNGLEMATALGKEQAVAITKLPHLKIDGIMTHYAVEDEKFVRERLAQFNEQT 228

Query: 183 RTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVVT 237
             LI   K     L    A+S   +  P  H  + R G  +YG       +HP  + ++ 
Sbjct: 229 AWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDF----PNHPEFKGMMA 284

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + +I  +   L    V Y     L RDS +A   +GY+DGY  + S             
Sbjct: 285 FKTQIAAVNNYLKDSTVGYDQTYTLKRDSRLANLPVGYSDGYRRSFSN------------ 332

Query: 298 GKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
            K F  I G   P++G+++M+  M D+TD    + GD + +FG     ++K  D+   +G
Sbjct: 333 -KAFVLINGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGHQGNAEVKTSDLTSLTG 391


>gi|237731612|ref|ZP_04562093.1| alanine racemase [Citrobacter sp. 30_2]
 gi|226907151|gb|EEH93069.1| alanine racemase [Citrobacter sp. 30_2]
          Length = 408

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 146/349 (41%), Gaps = 42/349 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I  +AL+ N H +  L G+  R  A++K +AYG     + P +   GVQ   + S EE
Sbjct: 46  LEISRSALEYNIHKVQQLLGDKTRMCAILKGDAYGHDLSLVTPVMMQNGVQCIGIASNEE 105

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKII-----FDTN-LIPVISSVPQLTFYSKLMSCG 119
              +R   YT Q     L  +    EK +     FDT  LI  +    +L+  ++     
Sbjct: 106 ISTVRQSGYTSQ-----LMRVRNATEKEMRQAADFDTEELIGNLDMAKRLSAIAQEKGKT 160

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV 177
           +    AL    G +R GL +  A           L  L +  I+SH    D   + V   
Sbjct: 161 IRIHLALN-SGGMSRNGLEVSTAAGLEEARAISALPGLKIVGIMSHFPEED---AAVVKR 216

Query: 178 QLERFRTL------ISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
            L RF T       I+  K  + +L  A++   L  P     + R G   YG  D I  S
Sbjct: 217 DLARFNTQSAQVLKITGLKREDVTLHVANTFATLTVPESWLDMVRVGGIFYG--DTIG-S 273

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              + V+T ++ I  +     G  V Y     L RDS++A    GYADGY    S     
Sbjct: 274 TEYKRVMTFKSAIASVNHYPKGNTVGYDRTYTLKRDSVLANIPTGYADGYRRVFSN---- 329

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                   G   I+G  VP+LGK +M+  + D+TD   +  GD + +FG
Sbjct: 330 -------AGHVLIRGQRVPVLGKTSMNTVIVDVTDLPQVASGDEVVLFG 371


>gi|323341783|ref|ZP_08082016.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464208|gb|EFY09401.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 375

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 149/341 (43%), Gaps = 33/341 (9%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75
           L N       +    +  AV+K N YG G  ++A       +    V ++E+   LR + 
Sbjct: 15  LNNTLKLREIIKPETKIIAVIKANGYGCGLVEVAHTCEKMKIDVLAVLNIEQARDLRKHG 74

Query: 76  PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ----VDTG 131
               I +L        K + + +L+ VI +     +  KL   G+ H   ++    VDTG
Sbjct: 75  ITTPILLLGATLESNFKYLIEYDLMQVIIN---HDYALKLNQFGLDHGVKVKTHVKVDTG 131

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLERFRTLIS- 187
            +RLG+   E  D   + +  +  ++  I SH   A   +  +   + +QL+R++ +I  
Sbjct: 132 LHRLGM---EDYDEIKSCYGLEGLEVCGIYSHFVEAQSYEGDAVAFSMLQLDRYKAVIDK 188

Query: 188 -HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAE 239
             + GI+  +    +S  IL   +  F   R G+ ++G       +++ +   + V++ E
Sbjct: 189 LRHDGIDPKMTHIQNSPSILNFGDLGFDAVRCGMIMFGLYHPSQLEMSLNDGYEPVLSFE 248

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+ ++R+   GE V YG   +   D ++A  + GY DG   +LS            GG 
Sbjct: 249 SRVCMVRELKKGEFVGYGRTFQAEDDMMLATVSAGYCDGVMKSLS----------LNGGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
             I   + PI+G I M   M D+T  +   + D + +FG +
Sbjct: 299 VVINDTLCPIVGDIAMSQFMVDVT-GVPCNLEDRVILFGHE 338


>gi|327457519|gb|EGF04174.1| alanine racemase [Propionibacterium acnes HL092PA1]
          Length = 375

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 153/372 (41%), Gaps = 24/372 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLRAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILKLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFRTLIS 187
           D+G  R+GL  +     T  +   +  ++  + +HL  +D P    ++  +++ F T ++
Sbjct: 132 DSGMGRIGLRPEHLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEESTRHEIDAFMTAVT 191

Query: 188 HYKGIEASLA----SSSGILLGPNY-HFQLTRPGISLYG-GTDKINKSHPMQTVVTAEAR 241
             +           ++SG +LG +     + R GI  YG   D       +   ++  + 
Sbjct: 192 QTQTDRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWISH 251

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  ++    G+ + YG     +  + IA   +GYADG    LS             G   
Sbjct: 252 VTFVKTINPGDAIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGHVL 300

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           I G + PI+G+I MD  M D+    S+ VGD + + G      +  DD+A   GT +Y++
Sbjct: 301 IGGSVHPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISYEI 360

Query: 358 LVRIGTRYAKFY 369
              I  R  + +
Sbjct: 361 TCAISKRVDRRW 372


>gi|70726513|ref|YP_253427.1| alanine racemase 2 [Staphylococcus haemolyticus JCSC1435]
 gi|68447237|dbj|BAE04821.1| alanine racemase 2 [Staphylococcus haemolyticus JCSC1435]
          Length = 358

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 150/329 (45%), Gaps = 40/329 (12%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK+NAY  G E    +   AG+  F  TS++E +K+R   P A IF++  ++  ++  
Sbjct: 27  AVVKNNAYHYGLEFAVTSFLKAGINTFSTTSLKEAIKVREIAPDATIFLMNAVYDFEKVR 86

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQEALDFTHNS 149
            +   +     ++P L +Y K  +        L+ +   +R G      ++E L+  H +
Sbjct: 87  HYQIQM-----TLPSLAYYYKYKNDLSGIKVHLEFENLLHRSGFRTLEEIREVLNDHHIN 141

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKGIEASLASS--- 199
            N+    +S + +H   AD+      S++ E +  ++        H+  I A  ++S   
Sbjct: 142 SNEDKMIISGLWTHFGYADEFDVPEYSIEREAWLNIVDTLLDEGYHFDLIHAQNSASYYR 201

Query: 200 SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
            G  L P  H    R GI+LYG      +N+ + ++  +T +  +I +R+  AG+   Y 
Sbjct: 202 EGQKLLP--HHTHARVGIALYGSRPYSALNE-YSIKQSLTVKGNVIQVREVNAGDNCGYS 258

Query: 258 GQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
              + TRD + +AV  +GY DG    +    ++H        +  IKG   PI  +  M 
Sbjct: 259 FAFEATRDHTRLAVVDVGYGDG----ILKSRAKH--------EALIKGKRYPI--RALMM 304

Query: 317 MTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
             MF   D   ++  D + ++  DI++D+
Sbjct: 305 SHMFVEVDE-EVDAQDEVILYNNDIRIDE 332


>gi|332363340|gb|EGJ41125.1| alanine racemase [Streptococcus sanguinis SK49]
          Length = 369

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 155/374 (41%), Gaps = 35/374 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIEASL-ASSSGILLGPNYHFQLT----RPGISLYG----GTDKINKSHPMQTVVTAE 239
              +   + AS+S   L   +H ++     R G  +YG    GT  +   +  +  ++  
Sbjct: 192 LDNVPPLVHASNSATSL---WHSEIVLNAVRLGDIIYGLNPSGT-VLELPYEFKPALSLV 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ +++  AG  V YG          I    +GYADG+   + G D            
Sbjct: 248 SELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFDV----------- 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             I G   PI+G+++MD     +  +  +  G  + + G      I + DVA   GT NY
Sbjct: 297 -LIDGQRCPIVGRVSMDQITVRLPQAYPL--GTPVALIGNSGAETITVTDVAEKRGTINY 353

Query: 356 DLLVRIGTRYAKFY 369
           +++  I  R  + Y
Sbjct: 354 EVVCLISDRVPRVY 367


>gi|313835050|gb|EFS72764.1| alanine racemase [Propionibacterium acnes HL037PA2]
 gi|314929020|gb|EFS92851.1| alanine racemase [Propionibacterium acnes HL044PA1]
 gi|314970970|gb|EFT15068.1| alanine racemase [Propionibacterium acnes HL037PA3]
 gi|328905717|gb|EGG25493.1| alanine racemase 1 [Propionibacterium sp. P08]
          Length = 375

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 153/372 (41%), Gaps = 24/372 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL+A+  N   +   +G+ +    VK +AYG G  +I+  +      D+  V +V EG 
Sbjct: 12  IDLSAIAANLTEVRKRAGDRKVLFAVKADAYGHGAVEISRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   S+  +  GV+    + V
Sbjct: 72  ELVESGITLPILKLSPADPWDTNTAITSGMRLTVVDFDTLDAVSRAAVQLGVTAKVHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +   + T  +   +  ++  + +HL  +D P        +++ F   +S
Sbjct: 132 DSGMGRIGLPPECLAELTAAADCAEGIEVEGVFTHLPISDVPEGDEFTHHEIDTFMNAVS 191

Query: 188 HYKGIEASLA----SSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHP-MQTVVTAEAR 241
             +           ++SG +LG +     + R GI  YG    ++     +  V++  + 
Sbjct: 192 QVEADRGPFPLVHLANSGAILGHDLGRTSMVRAGIVGYGYDPDLHADRAALHPVLSWISH 251

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  ++    G+ V YG        + IA   +GYADG    LS             G   
Sbjct: 252 VTFVKTVNPGDTVGYGRTWTARETTKIATIPVGYADGLSRGLSN-----------KGHVL 300

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           I G + PI+G+I MD  M D+    S+ VGD + + G      +  +D+A   GT +Y++
Sbjct: 301 IGGSVRPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLSANDMAELLGTISYEI 360

Query: 358 LVRIGTRYAKFY 369
              I  R  + +
Sbjct: 361 TCAISKRVDRRW 372


>gi|330813902|ref|YP_004358141.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486997|gb|AEA81402.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 154

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLG-CEKIAPALYNAGVQDFFVTSVE 66
           ++ I+LT++KNN+  +      +  +A VK ++YGLG   KI  +L     ++FFV +V+
Sbjct: 7   QVSINLTSIKNNYLFLKRFCKPSVVSATVKASSYGLGEANKIVASLVKLKCKNFFVANVK 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E +K+R       IFVL G+   +E + F   L PV+++  Q   +++ +         +
Sbjct: 67  EALKIRKKFKSINIFVLNGLGIKEESVFFKNKLTPVLNTYSQFEKWTRYLKKNYQRNIMI 126

Query: 127 QVDTGFNRLGL 137
            VDTG NRLG 
Sbjct: 127 HVDTGMNRLGF 137


>gi|218661516|ref|ZP_03517446.1| alanine racemase protein [Rhizobium etli IE4771]
          Length = 130

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 17/142 (11%)

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           M+ VV  +  ++  R   +G  + YGG     R + +A  A GYADG P +L        
Sbjct: 1   MEPVVRLDVAVVQTRTVPSGAKIGYGGAHVTRRQTRLATIAAGYADGLPRSL-------- 52

Query: 292 PSVFLGGKGFI--KGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVA 347
                G +G +  KG  +PI+G+++MD T  DIT     ++ +G  +++ GP+  LDDVA
Sbjct: 53  -----GDRGAVYHKGIRLPIVGRVSMDSTTVDITALPEGALSLGSLVEVLGPNQTLDDVA 107

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             +GT +Y++L  +G RY + Y
Sbjct: 108 GDAGTISYEILTGLGDRYDRQY 129


>gi|81429225|ref|YP_396226.1| alanine racemase [Lactobacillus sakei subsp. sakei 23K]
 gi|123563782|sp|Q38V64|ALR_LACSS RecName: Full=Alanine racemase
 gi|78610868|emb|CAI55920.1| Alanine racemase [Lactobacillus sakei subsp. sakei 23K]
          Length = 380

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 159/383 (41%), Gaps = 37/383 (9%)

Query: 8   RLKIDLTALKNN-WHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           R+ +D  A+  N  + +  L G +     V+K NAYG G   +A A   AG   F V  +
Sbjct: 10  RILVDQNAIYENIQNELKHLEGTDTVIFPVLKANAYGHGLIPVAEAAQAAGAAGFCVALL 69

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E + LR       I VL GI    E  +   N I +  +V  L +  +  +     PY 
Sbjct: 70  DEALALRRANFTEPILVL-GITQPSEIELAAANQISL--TVGSLEWLQEATAIAQQVPYL 126

Query: 126 ------LQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                 L +D+G  R+G+  +  L   +T    +        + +H A ADDP       
Sbjct: 127 HPVPIHLSIDSGMGRIGMRDEAELLAAYTFIKAHSDYFDFEGVFTHFATADDPDDTYFKE 186

Query: 178 QLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHP 231
           Q  RF  L++    +     +++S+  L     +  + R GISLYG    G    +  +P
Sbjct: 187 QSARFNQLMTALPERPRFVHVSNSATSLWHAACNGNIIRMGISLYGLNPSGNAIPDLPYP 246

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +  E+ ++ +++  AG  + YG   + +    I    +GYADG+   +        
Sbjct: 247 LKQALGIESELVFVKQVAAGTKIGYGATYEASEGEWIGTIPMGYADGWLRRMQ------- 299

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                G    + G    I+G+I MD  M  +       VG  +   G     +I L +VA
Sbjct: 300 -----GSTVLVDGQRCEIVGRICMDQMMIRLPKRYP--VGTKVVFVGKSGDDEITLQEVA 352

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
             + T +Y+++  +  R  + YT
Sbjct: 353 DYADTIHYEIICDLSDRIPRVYT 375


>gi|313803210|gb|EFS44406.1| alanine racemase [Propionibacterium acnes HL110PA2]
 gi|314963982|gb|EFT08082.1| alanine racemase [Propionibacterium acnes HL082PA1]
 gi|315081459|gb|EFT53435.1| alanine racemase [Propionibacterium acnes HL078PA1]
          Length = 375

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 151/372 (40%), Gaps = 24/372 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL A+  N   +   +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLRAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILKLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +     T  +   +  ++  + +HL  +D P        +++ F T ++
Sbjct: 132 DSGMGRIGLRPEHLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEEFTRHEIDAFMTAVT 191

Query: 188 HYKGIEASLA----SSSGILLGPNY-HFQLTRPGISLYG-GTDKINKSHPMQTVVTAEAR 241
             +           ++SG +LG +     + R GI  YG   D       +   ++  + 
Sbjct: 192 QTQTDRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWISH 251

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  ++    G+ + YG     +  + IA   +GYADG    LS             G   
Sbjct: 252 VTFVKTINPGDAIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGHVL 300

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           I G + PI+G+I MD  M D+    S+ VGD + + G      +  DD+A   GT +Y++
Sbjct: 301 IGGSVHPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISYEI 360

Query: 358 LVRIGTRYAKFY 369
              I  R  + +
Sbjct: 361 TCAISKRVDRRW 372


>gi|213581079|ref|ZP_03362905.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 240

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 19/224 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSV 65
           ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++
Sbjct: 5   IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  I +L G    Q+   +DT  L   I S  QL     L +  ++ P 
Sbjct: 62  EEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL---KALQNARLNAPL 118

Query: 125 AL--QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +  +V++G NRLG   + A          + +G+++L +SH A AD P         E 
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTL-MSHFAQADHPEGIG-----EA 172

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGT 223
            R +    +G++   SL++S+  L  P  H+   RPGI LYG +
Sbjct: 173 MRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGAS 216


>gi|325696971|gb|EGD38858.1| alanine racemase [Streptococcus sanguinis SK160]
          Length = 369

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 151/371 (40%), Gaps = 29/371 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEKDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
              +   +  ++S+  L          R G  +YG    GT  +   +  +  ++  + +
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGT-VLKLPYEFKPALSLVSEL 250

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + +++  AG  V YG          I    +GYADG+   + G D              I
Sbjct: 251 VHVKEVEAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFDV------------LI 298

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358
            G   PI+G+++MD     +  S  +  G  + + G      I + DVA   GT NY+++
Sbjct: 299 DGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITVTDVAEKRGTINYEVV 356

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 357 CLISDRVPRVY 367


>gi|206895841|ref|YP_002247535.1| alanine racemase [Coprothermobacter proteolyticus DSM 5265]
 gi|226711035|sp|B5Y9T8|ALR_COPPD RecName: Full=Alanine racemase
 gi|206738458|gb|ACI17536.1| alanine racemase [Coprothermobacter proteolyticus DSM 5265]
          Length = 348

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 160/369 (43%), Gaps = 53/369 (14%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75
           LKNN   +     +    AVVKD+AYG     + P L   G+  F V   ++ + L  + 
Sbjct: 13  LKNNVELIRQKLPDLEPIAVVKDDAYGHDAAVVVPELLKNGITKFAVVYAKDALMLSEF- 71

Query: 76  PQARIFVLYGIHPGQEKIIF--DTNLIPVISSVPQ--LTFY---SKLMSCGVSH---PYA 125
                        G E I+   D  L  + S   +  + F    SK +S G+      + 
Sbjct: 72  -------------GAEWILVLDDPPLSNMCSEYEKRGIRFCITDSKWLSDGLLELPIKFH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRT 184
           L VD G +R G+   E    T     K +G +L  I SHL+     S  + + + ERFR 
Sbjct: 119 LFVDVGMHREGVPWYET--NTIREICKVVGNRLEGICSHLSNGLSDSQAL-ATEEERFRE 175

Query: 185 LIS-HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-MQTVVTAEARI 242
           ++S   +G+   L++S+ +      +    RPGISLYG        +P ++ V++ +AR+
Sbjct: 176 VLSIAPEGLMVHLSNSASLYNAKFPYATHFRPGISLYG------YGYPGLKPVLSLKARV 229

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I       GE +SYG   + T  + +    +GY DGY   LS            G K   
Sbjct: 230 IHEHILEPGEGLSYGWTWRATEPTHVVTVPVGYGDGYNRKLSN-------KAIAGSKA-- 280

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLL 358
            G +  I G +TMD TMF+   +++  VGD I + G         D++A   GT  Y++L
Sbjct: 281 -GNLQQI-GTVTMDFTMFEAPKNVT--VGDEIVLMGEWEGGHFWADEMAQLVGTIPYEVL 336

Query: 359 VRIGTRYAK 367
             I  R  +
Sbjct: 337 TSINPRVPR 345


>gi|227894495|ref|ZP_04012300.1| alanine racemase [Lactobacillus ultunensis DSM 16047]
 gi|227863654|gb|EEJ71075.1| alanine racemase [Lactobacillus ultunensis DSM 16047]
          Length = 376

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 158/382 (41%), Gaps = 40/382 (10%)

Query: 9   LKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A++ N  + +  L+   +  AVVK NAYG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIRRNLENEIKHLAPGQKMLAVVKANAYGHGAVEVAKVATEVGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSK----LMSCGVS 121
            ++LR       I VL  + P    I  + D +L     +VP L +  +    L    + 
Sbjct: 71  ALQLRRADIVKPILVLGVVSPEYAPIAAVNDVSL-----TVPNLEWLKEAEKYLAKENLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDF-THNSF--NKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L +D+G  R+G S  E  DF   N F  N     +  + +H A AD         Q
Sbjct: 126 LKIHLGIDSGMGRIGFSEDE--DFIAANKFLENNDHFFVEGMFAHFASADSADETYFKHQ 183

Query: 179 LERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKS 229
            E+F  + S    K     + +++  +        L R GI +YG        +  +N +
Sbjct: 184 CEKFNHMKSLLTVKPKWIHVDNTAASIFHEGIKSDLVRFGIGIYGLNPSSNPDSPDLNPA 243

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G    
Sbjct: 244 FKLEPALSFESELTHVKTIHKGDGVGYGSTFVADKDTIIGTVPVGYADGWIRKFQGF--- 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
               V +G K        PI+G+I MD  M  + + + +     I    P    +  A A
Sbjct: 301 ---KVKVGDK------YCPIVGRICMDQFMVKLPEKMPVGTKVVIISNNPADPNNIKAAA 351

Query: 350 S--GTTNYDLLVRIGTRYAKFY 369
               T +Y++   +G R  + Y
Sbjct: 352 DYVDTIHYEVACLLGDRLPRVY 373


>gi|314922758|gb|EFS86589.1| alanine racemase [Propionibacterium acnes HL001PA1]
 gi|314965676|gb|EFT09775.1| alanine racemase [Propionibacterium acnes HL082PA2]
 gi|315094626|gb|EFT66602.1| alanine racemase [Propionibacterium acnes HL060PA1]
 gi|315105345|gb|EFT77321.1| alanine racemase [Propionibacterium acnes HL050PA2]
 gi|327328857|gb|EGE70617.1| alanine racemase [Propionibacterium acnes HL103PA1]
          Length = 352

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 153/366 (41%), Gaps = 36/366 (9%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGVKLRLYTPQARIF 81
           M   +G+ +    VK +AYG G  +++  +      D+  V +V EG +L        I 
Sbjct: 1   MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGITLPIL 60

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ 140
            L    P        + +   +     L   SK  +  GV+    + VD+G  R+GL  +
Sbjct: 61  KLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHIAVDSGMGRIGLCPE 120

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS----HYKGIEAS 195
              + T  +   K  ++  + +HL  +D P  +     +++ F T +S    H       
Sbjct: 121 RLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVSLVETHRGPFPLV 180

Query: 196 LASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVTAEARIILIRKAL 249
             ++SG +LG +     + R GI  YG       D+ +  HP  + ++    +  ++   
Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS---HVTFVKTVS 236

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF--IKGYMV 307
            G+ + YG     +  + IA   +GYADG    LS              KG+  I+G + 
Sbjct: 237 VGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-------------KGYVLIRGSVH 283

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGT 363
           PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y++   I  
Sbjct: 284 PIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISYEITCAISK 343

Query: 364 RYAKFY 369
           R  + +
Sbjct: 344 RVNRCW 349


>gi|119717707|ref|YP_924672.1| alanine racemase [Nocardioides sp. JS614]
 gi|119538368|gb|ABL82985.1| alanine racemase [Nocardioides sp. JS614]
          Length = 380

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 172/384 (44%), Gaps = 55/384 (14%)

Query: 8   RLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           R  IDL A+    H+   L+G A     AVVK + +G G  ++A      G     VT++
Sbjct: 16  RPDIDLAAVA---HNTRLLAGRATGELMAVVKADDFGHGAVELARTALANGATWLGVTTI 72

Query: 66  EEGVKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-----VPQLTFYSKLMS 117
           +E + LR   L  P     +L  ++P       D +L   + +     VP L       +
Sbjct: 73  DEALALRAAGLTAP-----LLSWLNP------VDADLAAAVRAGVDLGVPGLPHLDATTA 121

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLI--ISHLACADDPSSHV 174
              +  + L VD G  R G +          +   ++ G++ ++  + HL CA+DP+   
Sbjct: 122 ARGARVH-LHVDAGMARDGAAPATWGQLCRAARRAEQRGEIQVVGVMGHLGCAEDPTDEC 180

Query: 175 NSVQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           N++   RF   +   +  G+  +   LA+++  L  P  H  ++R G  L G    I+ S
Sbjct: 181 NALGRTRFAWALETARAAGLRPAHRHLAATAATLTDPRSHHTMSRVGAGLVG----IDPS 236

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           H   ++  +T  A ++ +R+   G  V YG   + +  + + +  +GYADG P   SG  
Sbjct: 237 HTTRLRPALTLIAPVVQVRRVRGGTPVGYGHAYRTSAATHLGLVPLGYADGLPRLASGR- 295

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKL 343
                      +  ++G   P++G+I+MD  + D+ +   ++VG+ + +FGP    +  +
Sbjct: 296 ----------AEVLVRGRRRPVVGRISMDQLVVDLGER-PVDVGEGVTVFGPGDAGEPTV 344

Query: 344 DDVALASGTTNYDLLVRIGTRYAK 367
            + A  S T  ++++  IG R  +
Sbjct: 345 AEWAAWSETIEHEIVTGIGARVPR 368


>gi|59711342|ref|YP_204118.1| alanine racemase [Vibrio fischeri ES114]
 gi|59479443|gb|AAW85230.1| alanine racemase [Vibrio fischeri ES114]
          Length = 403

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 163/382 (42%), Gaps = 42/382 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID  A +NN  ++ A L  + +  A++K +AYG G E +  ++    V+   +TS EE
Sbjct: 42  LEIDTQAFQNNIDTLRASLEQDTKVCAIMKADAYGNGIEGLMASVIERNVECIGITSNEE 101

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
              +R       +  +    P + +      +  +I S  Q    +KL     +  P  L
Sbjct: 102 ARIVRAKGFVGELMRVRAASPNEIESGLQYKIEELIGSSEQANIIAKLAKQNNTIIPVHL 161

Query: 127 QVDTG-FNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHL--ACADDPSSHVNSV 177
            ++ G   R GL L      +EAL+   N     +G    I++H      D+  + +N  
Sbjct: 162 ALNAGGMGRNGLDLSQPQGKKEALNIAFNGHVNIVG----IMTHFPNESVDEIRTKLNLF 217

Query: 178 QLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           + E  + LI   +     I   +A+S   +  P  H  + RPG  LYG  D  N     +
Sbjct: 218 KQES-QWLIDEAQLNRDDITLHVANSYTTINLPEAHLDMVRPGGLLYG--DMPNNPE-YK 273

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +V  +  +  +     G  + Y     L RDS++A   +GY+DGY  ++          
Sbjct: 274 RIVQFKTSVASLNYLPKGSTIGYSSTYVLGRDSILANLPLGYSDGYVRSI---------- 323

Query: 294 VFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
              G  G+  I G    ++G  +M+ TM DITD  +++ GD + +FG      I+  ++ 
Sbjct: 324 ---GNNGYVLINGQKANVVGVTSMNTTMVDITDIKNVQPGDEVVLFGKQNEFTIEAKEME 380

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             S  +  +L V  G+   K Y
Sbjct: 381 AFSSRSMPELYVIWGSTNPKIY 402


>gi|223670745|dbj|BAH22617.1| alanine racemase [Marsupenaeus japonicus]
          Length = 421

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 161/393 (40%), Gaps = 53/393 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           F+ + +D  AL  N   +  LS        VVK  AYG G   +   L   GV++  V +
Sbjct: 38  FIHVNLDAVAL--NVDILKGLSSPKTEIMGVVKGGAYGSGLLPVVEVLLEKGVRELAVAT 95

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS------SVPQLTFYSKLMSC 118
           V EG+ LR +     I +L  + P +   +   NLIP +S      SVP+    S +   
Sbjct: 96  VAEGLYLRRHGINVPITILGNLVPCEVSDVTQHNLIPSLSWSQALMSVPR---ESLVYPD 152

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G     A+ +DTG +R G+  ++      +  + ++  LS+  +H   A       N  Q
Sbjct: 153 GSRLKVAINIDTGMSRYGVQPEDLPALVQDLDDLEVTILSM-YTHFQSAIT-EREKNQKQ 210

Query: 179 LERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKINK 228
           L+ F +    YK  GI   +A+++G + G        RPG ++ G        GT++  K
Sbjct: 211 LDLFLSASEPYKCRGITRHVAATTGCVQGLGTDLDFIRPGGAITGLCSGSDKEGTNQFAK 270

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               Q   +  AR    +   AG  V Y G    + D  IA  + G++DG    LS    
Sbjct: 271 KR-FQPAFSVIARPTFYKLLGAGRHVGYDGTYTTSEDEWIANFSTGWSDGLSRRLS---- 325

Query: 289 EHSPSVFLGGKGFIK----GYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPDIKL 343
                    G G ++    G   PI+G+++MD     + +  L  EV    Q+   D   
Sbjct: 326 --------NGVGAVRRISTGERCPIVGRVSMDSITVRLPEQPLPDEV---FQVLTDD--Y 372

Query: 344 DDVALASGT------TNYDLLVRIGTRYAKFYT 370
           D+V  A G         Y++     TR  + YT
Sbjct: 373 DEVTSAVGMARNLGGATYEIPGNWSTRLPRLYT 405


>gi|86138387|ref|ZP_01056961.1| alanine racemase [Roseobacter sp. MED193]
 gi|85824912|gb|EAQ45113.1| alanine racemase [Roseobacter sp. MED193]
          Length = 382

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 160/383 (41%), Gaps = 37/383 (9%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           NE    +I    +  N  H+++ L    R  AV+K +AYG G E + PAL   GV+   +
Sbjct: 6   NESAWCEISPAQISQNLRHTLDRLPAQTRLCAVIKADAYGHGIENVVPALLAQGVRHIGI 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVS 121
           ++  E   +R       I  L    P + +     N+  +I SV  +    ++L + G+ 
Sbjct: 66  SANSEARAVRAAGFTGAILRLRTATPEEVEDALSYNVQELIGSVGGMQAILNQLGARGLP 125

Query: 122 HPYALQVDT-GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV--Q 178
            P  L ++  G +R G+ L      T      +LG   ++     C   PS+  + +   
Sbjct: 126 -PVHLSLNAGGMSRDGVELSTQQGRTDCGRILELGAERIV---GLCTHFPSNSFDELADN 181

Query: 179 LERFRTLIS--------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           + RF+  ++          + I     S+  +  G +    + R G  L+G    I  + 
Sbjct: 182 IARFQQDLAWVFANSSLRREDILTHAGSTLTLAAGQDPKVDMMRCGAILFG----IAGAG 237

Query: 231 P-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           P  +  +  ++R+I +     G  V Y     L  D L+A  A+GYA+GY   +S     
Sbjct: 238 PEFRPAMQLKSRVISLGTYPKGSTVGYDRTCVLPDDRLLASVAMGYANGYSRQMS----- 292

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                  G +  I+G + P++G I+M+  + D+T+   + +GD +  FG     +I    
Sbjct: 293 ------KGAQVLIRGQICPVMGAISMNTLVVDVTEVPGVAIGDEVVAFGSQGGCEIGAAA 346

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
           +   SGT   DL    G R  + 
Sbjct: 347 IEGGSGTILADLFSDWGQRNPRL 369


>gi|320459028|dbj|BAJ69649.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 450

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 123/283 (43%), Gaps = 47/283 (16%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNK---------KLGQLSLI--ISHLACADDPS--S 172
           ++VD+GF R G        FT   F+          K G L ++   SHLA AD P    
Sbjct: 155 VKVDSGFGRNG--------FTPAGFDAALAALVPLAKEGVLRIVGQWSHLAVADSPDVPE 206

Query: 173 HVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
            V S   Q+  F+      +  GI      LA+++  L  P  HF+LTRPGI LYG    
Sbjct: 207 FVASTDQQIATFKDFTRRMELAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLYGYEPD 266

Query: 226 INKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                P    +T     +A++  ++   AG  +SYG       ++  A+  +GYADG   
Sbjct: 267 PAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYADGIHR 326

Query: 282 TLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSIEVGDY 333
           + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +  GD 
Sbjct: 327 SASGFDMEGAKHVEKPGGPVRIMTAEGPRLYRVCGRVCMDQFIVDLHGSAAELGVHEGDT 386

Query: 334 IQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++FG        +   DD A A+ T +Y++   +  R  + Y
Sbjct: 387 VELFGAGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 429


>gi|290476786|ref|YP_003469697.1| Alanine racemase 2 [Xenorhabdus bovienii SS-2004]
 gi|289176130|emb|CBJ82935.1| Alanine racemase 2 [Xenorhabdus bovienii SS-2004]
          Length = 410

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 156/360 (43%), Gaps = 63/360 (17%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+ T  +NN H++ + L+ + +   V+K +AYG G + + P++   G+    +TS EE
Sbjct: 45  VEINTTTFENNIHTLQSKLTKDTKVCVVLKGDAYGHGIDLLMPSVIKTGMPCVGITSNEE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    + +   L  I       I  T    +   V  L     + +    H  A++
Sbjct: 105 ARIVRESGFKGQ---LMRIRAAAVTEIESTLGYDMEEMVGDLEHAKTIDALAKKHGKAIR 161

Query: 128 V----DTG-FNRLGLSL------QEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHV 174
           V    +TG  +R GL +      QEAL         +L  L L+  +SH A  D      
Sbjct: 162 VHLVLNTGRMSRNGLEMKTEQGKQEALKIA------QLPNLKLVGMMSHYALKD------ 209

Query: 175 NSVQLERFRTLISHYKGIEASL---------------ASSSGILLGPNYHFQLTRPGISL 219
               L+  R  ++ +K   A L               +SS   +  P   F + R G +L
Sbjct: 210 ----LDAIREGVNDFKEQTAWLIKTANLKRNEIILHASSSYASIRVPEAQFDMVRVGSAL 265

Query: 220 YGGTDKINKSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
           YG    +N  +P  + ++  + R+  ++    G  VSY     L RDS +A   IG++DG
Sbjct: 266 YG---ILNPEYPEFKPLIQVKTRVASVKPYPKGNGVSYDNTYILKRDSKLANLPIGFSDG 322

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           +  +LS          F+     I G+  P++G ++M+  M D+TD   ++ GD + IFG
Sbjct: 323 FSSSLSN-------KAFV----LINGHRAPVVGLVSMNTVMVDVTDLPDVKSGDEVVIFG 371


>gi|213692856|ref|YP_002323442.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524317|gb|ACJ53064.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 452

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 123/283 (43%), Gaps = 47/283 (16%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNK---------KLGQLSLI--ISHLACADDPS--S 172
           ++VD+GF R G        FT   F+          K G L ++   SHLA AD P    
Sbjct: 157 VKVDSGFGRNG--------FTPAGFDAALAALVPLAKEGVLRIVGQWSHLAVADSPDVPE 208

Query: 173 HVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
            V S   Q+  F+      +  GI      LA+++  L  P  HF+LTRPGI LYG    
Sbjct: 209 FVASTDQQIATFKDFTRRMELAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLYGYEPD 268

Query: 226 INKSHPMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                P    +T     +A++  ++   AG  +SYG       ++  A+  +GYADG   
Sbjct: 269 PAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYADGIHR 328

Query: 282 TLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITDS---LSIEVGDY 333
           + SG D E +  V   GG   I     P    + G++ MD  + D+  S   L +  GD 
Sbjct: 329 SASGFDMEGAKHVEKPGGPVRIMTAEGPRLYRVCGRVCMDQFIVDLHGSAAELGVHEGDT 388

Query: 334 IQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++FG        +   DD A A+ T +Y++   +  R  + Y
Sbjct: 389 VELFGAGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|313792676|gb|EFS40762.1| alanine racemase [Propionibacterium acnes HL110PA1]
          Length = 375

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 150/372 (40%), Gaps = 24/372 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGV 69
           IDL A+  N       +G+ +    VK +AYG G  +++  +      D+  V +V EG 
Sbjct: 12  IDLRAIAANLAVARKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQ 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
           +L        I  L    P        + +   +     L   SK  +  G++    + V
Sbjct: 72  ELVEAGITLPILKLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHIAV 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187
           D+G  R+GL  +     T  +   +  ++  + +HL  +D P        +++ F T ++
Sbjct: 132 DSGMGRIGLRPEHLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEEFTRHEIDAFMTAVT 191

Query: 188 HYKGIEASLA----SSSGILLGPNY-HFQLTRPGISLYG-GTDKINKSHPMQTVVTAEAR 241
             +           ++SG +LG +     + R GI  YG   D       +   ++  + 
Sbjct: 192 QTQTDRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWISH 251

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  ++    G+ + YG     +  + IA   +GYADG    LS             G   
Sbjct: 252 VTFVKTINPGDAIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGHVL 300

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357
           I G + PI+G+I MD  M D+    S+ VGD + + G      +  DD+A   GT +Y++
Sbjct: 301 IGGSVHPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISYEI 360

Query: 358 LVRIGTRYAKFY 369
              I  R  + +
Sbjct: 361 TCAISKRVDRRW 372


>gi|322819666|gb|EFZ26693.1| alanine racemase 2, putative [Trypanosoma cruzi]
          Length = 388

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 172/408 (42%), Gaps = 74/408 (18%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67
           +++ L  +  N   +  ++G A    +VK NAYG G  K++  L+NA GV  F V S+ E
Sbjct: 7   VEVCLRNIAYNVECIRRIAGKAELIPMVKGNAYGHGMGKVSEYLHNACGVHTFGVASLGE 66

Query: 68  GVKLRLYTP------QARIFVLYGIHPGQEKI--------IFDTNLIPVISSVPQLTFYS 113
            ++L    P      Q  IFV        E           +   L P++ ++PQL  + 
Sbjct: 67  ALELIESQPSIAEKAQNEIFVFSDTEVLNEGCQSYYQPCGRWAVRLTPILGTLPQLKAFC 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
              +   S    L+++TG NRLGL    L+EA+        K+ G + L++ H   A   
Sbjct: 127 ASNAFNNSK-LCLKLETGMNRLGLRFDELEEAVPIL-----KQRGGVDLLLQHFGIAGS- 179

Query: 171 SSHVNSVQLERFRTLISHYK------------GIEA---SLASSSGILLGPNYHFQLTRP 215
                   +ER    ++HY+            G+E    S+++S  +           RP
Sbjct: 180 --------VERLAETLNHYEAFKNAKKFLHDSGVEVRATSVSNSGAVEQRIGLEETYIRP 231

Query: 216 GISLYGGTDKINKSHPMQTVVTAEARIIL----IRKALAGELVSYGGQKKLTRDSLIAVA 271
           GI LYG     +K+       +     +L    +RK   GE V Y     +  DS+I + 
Sbjct: 232 GIMLYGPRSVTSKNLWNGKFASCFYTKVLHHFPLRK---GEGVGY-DLTPVKADSVIVML 287

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEV 330
            IGYADG+  T  G+  + +P      +   +  +  + G+I MDM    +  + +   +
Sbjct: 288 PIGYADGFLCTYKGMPIKVTP------EDAAEPIIGTVHGRINMDMAAVVVYPEEVGKNI 341

Query: 331 GD---------YIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G+          I+++G DI  ++ A++ GT  + L   +  R  + Y
Sbjct: 342 GNIMTAVKKESRIRVWGDDI--EEKAVSVGTIPHQLTCGLSIRVPRIY 387


>gi|259500992|ref|ZP_05743894.1| alanine racemase [Lactobacillus iners DSM 13335]
 gi|302190559|ref|ZP_07266813.1| alanine racemase [Lactobacillus iners AB-1]
 gi|259167686|gb|EEW52181.1| alanine racemase [Lactobacillus iners DSM 13335]
          Length = 375

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 158/386 (40%), Gaps = 48/386 (12%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V  ++
Sbjct: 10  KILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR    +  I VL    P    +  + ++   +  +  L   S  +S G      L
Sbjct: 70  EAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKQTSTFLS-GTKLKIHL 128

Query: 127 QVDTGFNRLGLSLQEAL----DF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            +D+G  R+G +  +A     D+  +H  ++     +  + +H + AD         Q++
Sbjct: 129 AIDSGMGRIGFNEDDAFLKANDYLLSHPEYD-----VEGMFTHFSTADCHDLEYFDSQVK 183

Query: 181 RFRTLISHYKGI------EASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KIN 227
           +F     H+K +           +S+  L        L R GI++YG          +I 
Sbjct: 184 KF----DHFKKMLRIKPKYIHCDNSAASLFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQ 239

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G  
Sbjct: 240 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----L 343
                      K  +     PI+G++ MD  M  + + +   VG  +++   D K    +
Sbjct: 299 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMP--VGTPVELISADAKAPNNI 345

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
             VA  + T +Y++   +  R  + Y
Sbjct: 346 KAVADYANTIHYEIACLLSDRVPREY 371


>gi|324999413|ref|ZP_08120525.1| alanine racemase [Pseudonocardia sp. P1]
          Length = 253

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 21/221 (9%)

Query: 129 DTGFNRLGLSLQEALDFTHNSFN---KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG +R G    E      +      +   ++  + SHLA AD+P       Q  R R  
Sbjct: 2   DTGLSRNGCPPDEWPGLVDDVAAAAAEGTCEVDAVWSHLARADEPGDPSIDAQAARLRAA 61

Query: 186 ISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQTVVTAE 239
            SH +         LA+S+ ++  P+ H  L RPGI+ YG  D I +    P++  +T  
Sbjct: 62  ASHVRDRGFAPLVHLANSAALMTRPDLHLDLVRPGIAAYG-LDPIAQPADSPLRPAMTVR 120

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            R+ L++   AGE VSYG +        +A+  +GYADG P  ++  D           +
Sbjct: 121 GRVALVKTVAAGEGVSYGHEWTAPGPRTLALVPLGYADGVPRRMN--DGRRM-------R 171

Query: 300 GFIKGYMVPILGKITMDMTMFDI--TDSLSIEVGDYIQIFG 338
             I   + P+ G++ MD  + D      L + VGD +++FG
Sbjct: 172 VRIGDTVRPVAGRVCMDQFVVDCGAPGELGVVVGDRVELFG 212


>gi|319779475|ref|YP_004130388.1| Alanine racemase, catabolic [Taylorella equigenitalis MCE9]
 gi|317109499|gb|ADU92245.1| Alanine racemase, catabolic [Taylorella equigenitalis MCE9]
          Length = 393

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 159/373 (42%), Gaps = 59/373 (15%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNA---GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           +T AVVK NAYG G         +A   G+ D     V     LR       I +L G  
Sbjct: 37  KTLAVVKANAYGHGLGAAIEGFADADGLGLIDLVDAEV-----LRKKGNTQEILLLEGFF 91

Query: 88  PGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA---------LQVDTGFNRLGL 137
             Q+  ++ +  +   + S  Q+ +  + +S       A         ++ +TG NRLG 
Sbjct: 92  HKQDIDVLLEGGISTALHSPYQIAYLKERLSEMAKESIAKDLKKINLFIKFNTGMNRLGF 151

Query: 138 SLQEALDFTHNSFN--KKLGQLSLI-----ISHLACAD--DPSSHVNSVQLERFRTLISH 188
              EA    H  ++  K L    LI     + H A AD  D    V+++ ++ F+     
Sbjct: 152 KPSEA----HEIYDQIKTLKSTGLIGTVGTMMHFANADSDDHEVQVHTI-VDDFKKNCLE 206

Query: 189 YKG--IEASLASSSGILLGPNYH----FQLTRPGISLYGGT-----DKINKSHPMQTVVT 237
           ++G  +  S+ +S+  +  P           RPG  LYG       D       ++  ++
Sbjct: 207 FEGRKVPVSICNSAACMRFPELASISGTNWIRPGCVLYGSQYFDYRDSEFTKLDLKPGMS 266

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A +I I+    G+ V YG +   T+ S IA+ A GYADGYP +     ++++  V + 
Sbjct: 267 LVADVIAIQNLKVGDSVGYGSKFTATKPSKIAIIACGYADGYPRS-----ADNNTEVGVL 321

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF---GPDIKLDDVALASGTTN 354
           GK         + G+++MDM   D+T    + +G  + ++   GP I  D+VA  SG   
Sbjct: 322 GK------RAKLAGRVSMDMIAIDVTHIPEVNIGTPVVLWGEGGPSI--DEVAKMSGRIA 373

Query: 355 YDLLVRIGTRYAK 367
           Y+L+  I  R  K
Sbjct: 374 YELMCGIAPRVPK 386


>gi|332363899|gb|EGJ41678.1| alanine racemase [Streptococcus sanguinis SK355]
          Length = 369

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 150/374 (40%), Gaps = 35/374 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSKHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      RI VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKRILVLGVSDLAALPLARKGKVSLTVASLEWLDLALAAEKDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------HPMQTVVTAE 239
              +   +  ++S+  L          R G  +YG    +N S       +  +  +T  
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYG----LNPSGRVLELPYEFKPALTLV 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ +++  AG  V YG          I    +GYADG+   + G D            
Sbjct: 248 SELVHVKEVDAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFDV----------- 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             I G   P++G+++MD     +  +  +  G  + + G      I   DVA   GT NY
Sbjct: 297 -LIDGKRCPLVGRVSMDQITVRLPQAYPL--GTPVVLIGNSGAETITATDVAEKRGTINY 353

Query: 356 DLLVRIGTRYAKFY 369
           +++  I  R  + Y
Sbjct: 354 EVVCLISDRVPRVY 367


>gi|300362411|ref|ZP_07058587.1| alanine racemase [Lactobacillus gasseri JV-V03]
 gi|300353402|gb|EFJ69274.1| alanine racemase [Lactobacillus gasseri JV-V03]
          Length = 376

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 150/377 (39%), Gaps = 30/377 (7%)

Query: 9   LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIKRNIENEMQHLEPGQKMLAVVKANGYGHGAVEVAKLADQVGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR       I VL  + P    I    ++   + ++  L    K L +  +     L
Sbjct: 71  ALELRRADITKTILVLGVVSPEYAPIAAANDISLTVPNLEWLKEAEKYLENSDLQLKIHL 130

Query: 127 QVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFR 183
            +D+G  R+G +  E  DF   N F K      +  + +H A AD         Q E+F 
Sbjct: 131 GIDSGMGRIGFN--EDKDFIAANKFLKNNDNFYIEGMFAHFASADSSDETYFKHQCEKFN 188

Query: 184 TLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-------MQT 234
            + S    K     + +++  +        L R GI +YG     N + P       +  
Sbjct: 189 HMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPNSPDLKSKIALDP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G         
Sbjct: 249 ALSFESELTHVKTIHQGDGVGYGSTFVANKDTIIGTVPVGYADGFIRKFQGF-------- 300

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS--GT 352
               K  +     PI+G+I MD  M ++   + I     I    PD   +  A A    T
Sbjct: 301 ----KVKVGNAYCPIVGRICMDQFMVEMPKEMPIGTKVVIISNNPDDPNNIKAAADYVDT 356

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y++   +  R  + Y
Sbjct: 357 IHYEVACLLNDRLPRVY 373


>gi|257899464|ref|ZP_05679117.1| alanine racemase [Enterococcus faecium Com15]
 gi|257837376|gb|EEV62450.1| alanine racemase [Enterococcus faecium Com15]
          Length = 374

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 147/352 (41%), Gaps = 33/352 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK N YG G  + A A    G   F V++++EGV+LR       I +L  +      +
Sbjct: 38  AVVKANGYGHGAVETAEAAVAGGASGFCVSNLDEGVELREAGFTQPILILNMVPYDALAL 97

Query: 94  IFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA--LQVDTGFNRLGL----SLQEALDFT 146
               +L     +   L   + ++    +  P +  L+ DTG  R+G      ++EA  F 
Sbjct: 98  AVAHDLSVTAGTREWLQAAAAILEESKLEMPLSIHLKADTGMGRIGFCTPEEVKEAAAFI 157

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILL 204
             S   ++ +   + +H + AD       ++Q ERF  ++     +     +++S+  L 
Sbjct: 158 RES---RVLEWEGLFTHFSTADQADDTYWNLQKERFMEVLKKLSELPRYVHVSNSATALW 214

Query: 205 GPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
                  + R G+++YG       + + +P+Q  +   + +I ++K  AGE + YG    
Sbjct: 215 HDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSELIQVKKLPAGEGIGYGETYI 274

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
                 I    IGYADG+   + G                ++G     +G++ MD  M  
Sbjct: 275 TPEAEWIGTIPIGYADGWLRKMQGFSL------------LVEGNYCETIGRVCMDQLMIR 322

Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +       VG  + + G     +I + DVA   GT +Y++   +G R  + Y
Sbjct: 323 LPQEFP--VGTKVTLIGKNADKEITMQDVADQLGTIHYEVACGLGQRIPREY 372


>gi|328945680|gb|EGG39831.1| alanine racemase [Streptococcus sanguinis SK1087]
          Length = 369

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 155/382 (40%), Gaps = 51/382 (13%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV---------ISSVPQLTFYSKLMSCGV 120
           +LR      +I VL          + D   +P+         ++S+  L           
Sbjct: 73  ELRSAGISKKILVLG---------VSDLAALPLSRKGKVSLTVASLEWLDLALDAEEDLT 123

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              + +++D+G  R+G    QEA +  H            I +H A AD+   H    QL
Sbjct: 124 GLNFHIKIDSGMGRIGFRDSQEAQEVIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQL 182

Query: 180 ERFRTLISHYKGIEASL-ASSSGILLGPNYHFQLT----RPGISLYGGTDK---INKSHP 231
            RF  ++S    +   + AS+S   L   +H ++     R G  +YG       +   + 
Sbjct: 183 ARFHQILSELDNVPPLVHASNSATSL---WHSEIVLNAVRLGDIIYGLNPSGRVLELPYE 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            +  ++  + ++ +++  AG  V YG          I    +GYADG+   + G D    
Sbjct: 240 FKPALSLVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFDV--- 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
                     I G   PI+G+++MD     +  +  +  G  + + G      I   DVA
Sbjct: 297 ---------LIDGQRCPIVGRVSMDQITVRLPRAYPL--GTPVVLIGNSGAETITATDVA 345

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY+++  I  R  + Y
Sbjct: 346 EKRGTINYEVVCLISDRVPRVY 367


>gi|213028189|ref|ZP_03342636.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 185

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 90/192 (46%), Gaps = 20/192 (10%)

Query: 39  NAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN 98
           NAYG G  + A  L +A    F V  +EE ++LR       I +L G         FD  
Sbjct: 1   NAYGHGLLETARTLPDADA--FGVARLEEALRLRAGGITQPILLLEGF--------FDAA 50

Query: 99  LIPVISS------VPQLTFYSKLMSCGVSHPYA--LQVDTGFNRLGLSLQEALDFTHN-S 149
            +P IS+      V      + L +  ++ P    +++DTG +RLG+  +EA  F    +
Sbjct: 51  DLPTISAQCLHTAVHNQEQLAALEAVELAEPVTVWMKLDTGMHRLGVRPEEAEAFYQRLT 110

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
             K + Q   I+SH A AD+P       QL+ F        G + S+A+S GILL P  H
Sbjct: 111 HCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAFCQGKPG-QRSIAASGGILLWPQSH 169

Query: 210 FQLTRPGISLYG 221
           F   RPGI LYG
Sbjct: 170 FDWARPGIILYG 181


>gi|293573028|ref|ZP_06683970.1| alanine racemase [Enterococcus faecium E980]
 gi|291606930|gb|EFF36310.1| alanine racemase [Enterococcus faecium E980]
          Length = 374

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 147/352 (41%), Gaps = 33/352 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK N YG G  + A A    G   F V++++EGV+LR       I +L  +      +
Sbjct: 38  AVVKANGYGHGAVETAEAAVAGGASGFCVSNLDEGVELREAGFTQPILILNMVPYDALAL 97

Query: 94  IFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA--LQVDTGFNRLGL----SLQEALDFT 146
               +L     +   L   + ++    +  P +  L+ DTG  R+G      ++EA  F 
Sbjct: 98  AVAHDLSVTAGTREWLQAAAAILEESKLEMPLSIHLKADTGMGRIGFCTPEEVKEAAAFI 157

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILL 204
             S   ++ +   + +H + AD       ++Q ERF  ++     +     +++S+  L 
Sbjct: 158 RES---RVLEWEGLFTHFSTADQSDDTYWNLQKERFMEVLKKLSELPRYVHVSNSATALW 214

Query: 205 GPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
                  + R G+++YG       + + +P+Q  +   + +I ++K  AGE + YG    
Sbjct: 215 HDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSELIQVKKLPAGEGIGYGETYI 274

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
                 I    IGYADG+   + G                ++G     +G++ MD  M  
Sbjct: 275 TPEAEWIGTIPIGYADGWLRKMQGFSL------------LVEGNYCETIGRVCMDQLMIR 322

Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +       VG  + + G     +I + DVA   GT +Y++   +G R  + Y
Sbjct: 323 LPQEFP--VGTKVTLIGKNADKEITMQDVADQLGTIHYEVACGLGQRIPREY 372


>gi|327458867|gb|EGF05215.1| alanine racemase [Streptococcus sanguinis SK1057]
          Length = 369

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 149/371 (40%), Gaps = 29/371 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSKHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALAAEKDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
              +      ++S+  L          R G  +YG    GT  +   +  +  ++  + +
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGT-VLKLPYEFEPALSLVSEL 250

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + +++  AG  V YG          I    +GYADG+   + G D              I
Sbjct: 251 VHVKEVEAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFDV------------LI 298

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358
            G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT NY+++
Sbjct: 299 DGQRCPIVGRVSMDQITVRLPQAYPL--GTPVVLIGNSGAETITATDVAEKRGTINYEVV 356

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 357 CLISDRVPRVY 367


>gi|212710795|ref|ZP_03318923.1| hypothetical protein PROVALCAL_01863 [Providencia alcalifaciens DSM
           30120]
 gi|212686492|gb|EEB46020.1| hypothetical protein PROVALCAL_01863 [Providencia alcalifaciens DSM
           30120]
          Length = 413

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 146/360 (40%), Gaps = 34/360 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I  +AL  N   +  L G+ A   AV+K ++YG     + P +    VQ   +TS  E
Sbjct: 51  IEISHSALDYNIKKVQTLLGDKAGLCAVLKGDSYGHDLTLVTPVMIENNVQCIGLTSNTE 110

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH----P 123
             ++R    + R   L  +    EK +       V   +  L    +L + G       P
Sbjct: 111 FKQVRDLGFKGR---LMRVRNATEKEMAQATEFHVEELIGNLDMAQRLNAIGAKQNTIIP 167

Query: 124 YALQVDT-GFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
             L +++ G +R GL +  A          +L  L +  I+SH    D+     +  + +
Sbjct: 168 IHLALNSAGMSRNGLEVSNAEGLQQAKLISQLPNLKIVGIMSHYPEEDEAQIRQDLAKFK 227

Query: 181 RFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
           +    +    G++       +A++   L  P     + R G   YG T     +   + V
Sbjct: 228 KQSQQVLKMTGLKREDVTLHVANTYATLTVPESWLDMVRVGGIFYGDTIA---TKDYKRV 284

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ I  +     G  V Y     L RDS++A   +GYADGY    S           
Sbjct: 285 MTFKSNIAAVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN---------- 334

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             G   I G  VP+ GK +M+  M DITD  +++ GD +  FG     +I  ++V   SG
Sbjct: 335 -AGHVLINGQRVPVFGKTSMNTVMVDITDLKNVQPGDEVVFFGKQGNGEITAEEVEEISG 393


>gi|323353285|ref|ZP_08087818.1| alanine racemase [Streptococcus sanguinis VMC66]
 gi|322121231|gb|EFX92994.1| alanine racemase [Streptococcus sanguinis VMC66]
          Length = 369

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 149/374 (39%), Gaps = 35/374 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------HPMQTVVTAE 239
              +      ++S+  L          R G  +YG    +N S       +  +  ++  
Sbjct: 192 LDSVTPLVHASNSATSLWHSETVLNAVRLGDIIYG----LNPSGRVLELPYEFKPALSLV 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ +++  AG  V YG          I    +GYADG+   + G D            
Sbjct: 248 SELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFDV----------- 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             I G   PI+G+++MD     +  S  +  G  + + G      I   DVA   GT NY
Sbjct: 297 -LIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITATDVAEKRGTINY 353

Query: 356 DLLVRIGTRYAKFY 369
           +++  I  R  + Y
Sbjct: 354 EVVCLISDRVPRVY 367


>gi|324990138|gb|EGC22076.1| alanine racemase [Streptococcus sanguinis SK353]
          Length = 369

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 148/370 (40%), Gaps = 27/370 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVVTAEARII 243
              +   +  ++S+  L          R G  +YG       +   +  +  ++  + ++
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLDPSGRVLELPYEFKPALSLVSELV 251

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +++  AG  V YG          I    +GYADG+   + G D              I 
Sbjct: 252 HVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFDV------------LID 299

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLV 359
           G   PI+G+++MD     +  S  +  G  + + G      I   DVA   GT NY+++ 
Sbjct: 300 GQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITATDVAEKRGTINYEVVC 357

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 358 LISDRVPRVY 367


>gi|91779715|ref|YP_554923.1| alanine racemase [Burkholderia xenovorans LB400]
 gi|91692375|gb|ABE35573.1| Alanine racemase [Burkholderia xenovorans LB400]
          Length = 390

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 135/326 (41%), Gaps = 30/326 (9%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           V K + +G G  K+A     AGV  F V S EEGV +R       I +     P     +
Sbjct: 50  VCKGDGFGFGAAKVARLAAQAGVDGFCVGSPEEGVTIRRAGIDRDILLFASTLPEDAAQV 109

Query: 95  FDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL 154
               L   I S   L  +   ++ GV+    L++D GF R G    +         ++  
Sbjct: 110 AALGLTVTIQSRESLHAF---INAGVAVDAFLEIDPGFGRFGFLPSQWQAAFAALRDQST 166

Query: 155 GQLSLIISHLACADDPSSHVNSVQLERFRTLISH-----YKGIEASLASSSGILLGPNYH 209
            +L  + +HL+  +  S  V   Q   F   ++      +  +   LASS  +L  P+  
Sbjct: 167 VRLKGVYTHLSSPE--SEDVTRQQAGVFDAALADARAAGFDNLTTMLASSRVMLAHPHLA 224

Query: 210 FQLTRPGISLYGGTDKINKSH-PMQTVVTA-EARIILIRKALAGEL--VSYGGQKKLTRD 265
           +Q   PG  LYG  D    +  P++ ++ A   RII +++  AG    + Y    +L R 
Sbjct: 225 YQAVDPGRLLYGALDADWMARAPLRPMLRAVRGRIIHVQEHPAGATLGIGYAEPIRLERG 284

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
             I V  IG+ DG           H P +   G+  + G    ILG+ +   T+ DIT+ 
Sbjct: 285 VRIGVVPIGFWDGL---------NHVPPL---GRVLVHGQPARILGRRSFQHTVIDITEI 332

Query: 326 LSIEVGDYIQIFGPD----IKLDDVA 347
            +   G  + + G D    I +D++A
Sbjct: 333 AAARTGSVVTLLGQDGDQSITIDEMA 358


>gi|332365661|gb|EGJ43419.1| alanine racemase [Streptococcus sanguinis SK1059]
          Length = 369

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 149/371 (40%), Gaps = 29/371 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
              +      ++S+  L          R G  +YG    GT  +   +  +  ++  + +
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGT-VLELPYEFKPALSLVSEL 250

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + +++  AG  V YG          I    +GYADG+   + G D              I
Sbjct: 251 VHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFDV------------LI 298

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358
            G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT NY+++
Sbjct: 299 DGQRCPIVGRLSMDQITVRLPQAYPL--GTLVVLIGNSGAETITATDVAEKRGTINYEVV 356

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 357 CLISDRVPRVY 367


>gi|325688113|gb|EGD30132.1| alanine racemase [Streptococcus sanguinis SK72]
          Length = 369

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 149/370 (40%), Gaps = 27/370 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAHLPQMTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAREAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLTRFHQILSE 191

Query: 189 YKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEARII 243
              +   +  ++S+  L          R G  +YG       +   +  +  ++  + ++
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALSLISELV 251

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +++  AG  V YG          I    +GYADG+   + G D              I 
Sbjct: 252 HVKEVEAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFDV------------LID 299

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLV 359
           G   PI+G+++MD     +  S  +  G  + + G      I + DVA   GT NY+++ 
Sbjct: 300 GQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITVTDVAEKRGTINYEVVC 357

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 358 LISDRVPRVY 367


>gi|324993504|gb|EGC25424.1| alanine racemase [Streptococcus sanguinis SK405]
          Length = 369

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 149/374 (39%), Gaps = 35/374 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLDWLDLALTAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------HPMQTVVTAE 239
              +      ++S+  L          R G  +YG    +N S       +  +  ++  
Sbjct: 192 LDSVTPLVHASNSATSLWHSETVLNAVRLGDIIYG----LNPSGRVLELPYEFKPALSLV 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ +++  AG  V YG          I    +GYADG+   + G D            
Sbjct: 248 SELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFDV----------- 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             I G   PI+G+++MD     +  S  +  G  + + G      I   DVA   GT NY
Sbjct: 297 -LIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITATDVAEKRGTINY 353

Query: 356 DLLVRIGTRYAKFY 369
           +++  I  R  + Y
Sbjct: 354 EVVCLISDRVPRVY 367


>gi|314983018|gb|EFT27110.1| alanine racemase [Propionibacterium acnes HL110PA3]
          Length = 352

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 153/366 (41%), Gaps = 36/366 (9%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGVKLRLYTPQARIF 81
           M   +G+ +    VK +AYG G  +++  +      D+  V +V EG +L        I 
Sbjct: 1   MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGITLPIP 60

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ 140
            L    P        + +   +     L   SK  +  GV+    + VD+G  R+GL  +
Sbjct: 61  KLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHIAVDSGMGRIGLCPE 120

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS----HYKGIEAS 195
              + T  +   K  ++  + +HL  +D P  +     +++ F T +S    H       
Sbjct: 121 RLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVSLVETHRGPFPLV 180

Query: 196 LASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVTAEARIILIRKAL 249
             ++SG +LG +     + R GI  YG       D+ +  HP  + ++    +  ++   
Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS---HVTFVKTVS 236

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF--IKGYMV 307
            G+ + YG     +  + IA   +GYADG    LS              KG+  I+G + 
Sbjct: 237 VGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-------------KGYVLIRGSVH 283

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGT 363
           PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y++   I  
Sbjct: 284 PIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISYEITCAISK 343

Query: 364 RYAKFY 369
           R  + +
Sbjct: 344 RVNRCW 349


>gi|327461776|gb|EGF08107.1| alanine racemase [Streptococcus sanguinis SK1]
          Length = 369

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 149/371 (40%), Gaps = 29/371 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALDAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
              +      ++S+  L          R G  +YG    GT  +   +  +  ++  + +
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGT-VLELPYEFKPALSLVSEL 250

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + +++  AG  V YG          I    +GYADG+   + G D              I
Sbjct: 251 VHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFDV------------LI 298

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358
            G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT NY+++
Sbjct: 299 DGQRCPIVGRLSMDQITVRLPQAYPL--GTLVVLIGNSGAETITATDVAEKRGTINYEVV 356

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 357 CLISDRVPRVY 367


>gi|323342193|ref|ZP_08082425.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463305|gb|EFY08499.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 356

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 159/364 (43%), Gaps = 33/364 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L  L  N + +  ++G +    VVK NAYG G  + +  +    +    V+S++E  +
Sbjct: 10  INLDNLSYNINKIQEVTGKS-LFGVVKANAYGHGDVECSRIMIEENLPFICVSSIDEAQR 68

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           L        I +   + P   KII +      I ++P + ++ ++ +  ++    L+++ 
Sbjct: 69  LVHKGINYDILIFSYVDP---KIIAEQGKEHFIYTIPSIQWFREVTALNLNLRMHLEINV 125

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--- 187
           G NR+G+   + ++   +S       L  I +HL   ++        QL RF  +I+   
Sbjct: 126 GMNRIGIKNDKEIEEILSSD----VPLEGIYTHLPSPENLEK--GKEQLTRFENIINASE 179

Query: 188 -HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            ++K I    A  S  L+  N      R G+++YG    I    P   V++  ++I  I 
Sbjct: 180 RNFKWIHVGNAPVS--LIKDNTLINGFRMGLAVYGYRVDIPSLKP---VLSLHSKICHID 234

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   GE + Y     + +        IGYAD + +        +   V++ GK +     
Sbjct: 235 RVNPGESIGYDYTYLVEKKEYFGTMPIGYADCFDV------RNNLVPVYIKGKPY----- 283

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
             I+GKI MD TM  I +S+ +  GD +++ GP     ++   +G + Y  L  +  R  
Sbjct: 284 -SIVGKICMDQTMIRIDESVYL--GDEVELIGPHRTCVEIESITGISKYIQLSTLSERIT 340

Query: 367 KFYT 370
           + YT
Sbjct: 341 RHYT 344


>gi|314933577|ref|ZP_07840942.1| alanine racemase family protein [Staphylococcus caprae C87]
 gi|313653727|gb|EFS17484.1| alanine racemase family protein [Staphylococcus caprae C87]
          Length = 358

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 149/344 (43%), Gaps = 44/344 (12%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK+NAY  G E        AG+Q F  TS++E +++R   P A IF++  ++      
Sbjct: 27  AVVKNNAYHYGLEFSVKEFLKAGIQTFSTTSLKEAIRVREIAPHATIFLMNAVYE----- 81

Query: 94  IFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQEAL-DFTH 147
            FDT     +  ++P LT+Y +      +    L+ +   +R G      L E L D   
Sbjct: 82  -FDTVREYEIHMTLPSLTYYYEHKEDLRNIHVHLEFENLLHRSGFKDLEELHEVLEDHAQ 140

Query: 148 NSFNKKLGQLSLIISHLACADD---PSSHVN-SVQLERFRTLISH---YKGIEASLASS- 199
           N  + K+  +S I +H   AD+   P   +     L    TL+     +  I A  ++S 
Sbjct: 141 NKSDNKMI-ISGIWTHFGYADEFDVPEYDIERQAWLNVLNTLLGEGYSFDMIHAQNSASF 199

Query: 200 --SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELVS 255
              G ++ P  H    R GI+LYG     K+ +S  +Q  +T +  +I +R+  AG+   
Sbjct: 200 YREGQVVLP--HHTHARVGIALYGSRPYSKLKES-EIQQSLTVKGNVIQVREVNAGDYCG 256

Query: 256 YGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
           Y    + T++ + +AV  IGY DG       L S       + GK +      PI   + 
Sbjct: 257 YSFAYEATKNQTQLAVVDIGYGDGI------LKSRAQHEAIINGKRY------PIRA-LM 303

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           M     ++ D   +   D + ++  DI++D+        N + L
Sbjct: 304 MSHMFVEVDD--EVHAQDEVVLYNNDIRIDEFTFKGVGANSEQL 345


>gi|309803757|ref|ZP_07697843.1| alanine racemase [Lactobacillus iners LactinV 11V1-d]
 gi|309804662|ref|ZP_07698727.1| alanine racemase [Lactobacillus iners LactinV 09V1-c]
 gi|312872507|ref|ZP_07732575.1| alanine racemase [Lactobacillus iners LEAF 2062A-h1]
 gi|312874316|ref|ZP_07734348.1| alanine racemase [Lactobacillus iners LEAF 2052A-d]
 gi|325912385|ref|ZP_08174780.1| alanine racemase [Lactobacillus iners UPII 143-D]
 gi|329920529|ref|ZP_08277261.1| alanine racemase [Lactobacillus iners SPIN 1401G]
 gi|308164166|gb|EFO66427.1| alanine racemase [Lactobacillus iners LactinV 11V1-d]
 gi|308166054|gb|EFO68272.1| alanine racemase [Lactobacillus iners LactinV 09V1-c]
 gi|311090189|gb|EFQ48601.1| alanine racemase [Lactobacillus iners LEAF 2052A-d]
 gi|311091869|gb|EFQ50245.1| alanine racemase [Lactobacillus iners LEAF 2062A-h1]
 gi|325475727|gb|EGC78898.1| alanine racemase [Lactobacillus iners UPII 143-D]
 gi|328936205|gb|EGG32658.1| alanine racemase [Lactobacillus iners SPIN 1401G]
          Length = 375

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 158/386 (40%), Gaps = 48/386 (12%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V  ++
Sbjct: 10  KILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR    +  I VL    P    +  + ++   +  +  L   S  +S G      L
Sbjct: 70  EAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKKTSTFLS-GTKLKIHL 128

Query: 127 QVDTGFNRLGLSLQEAL----DF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            +D+G  R+G +  +A     D+  +H  ++     +  + +H + AD         Q++
Sbjct: 129 AIDSGMGRIGFNEDDAFLKANDYLLSHPEYD-----VEGMFTHFSTADCHDLEYFDSQVK 183

Query: 181 RFRTLISHYKGI------EASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KIN 227
           +F     H+K +           +S+  +        L R GI++YG          +I 
Sbjct: 184 KF----DHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQ 239

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G  
Sbjct: 240 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----L 343
                      K  +     PI+G++ MD  M  + + +   VG  +++   D K    +
Sbjct: 299 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMP--VGTPVELISADAKAPNNI 345

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
             VA  + T +Y++   +  R  + Y
Sbjct: 346 KAVADYANTIHYEIACLLSDRVPREY 371


>gi|296161155|ref|ZP_06843965.1| alanine racemase [Burkholderia sp. Ch1-1]
 gi|295888678|gb|EFG68486.1| alanine racemase [Burkholderia sp. Ch1-1]
          Length = 390

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 126/324 (38%), Gaps = 26/324 (8%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           V K + +G G  K+A     AGV  F V S EEGV +R       I +     P     +
Sbjct: 50  VCKGDGFGFGAAKVARLAAQAGVDGFCVGSPEEGVAIRRAGIDRDILLFASTLPEDAAQV 109

Query: 95  FDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL---SLQEALDFTHNSFN 151
               L   I S   L  +   +  GV+    L++D GF R G      Q A     +   
Sbjct: 110 AALGLTVTIQSQESLHAF---IDAGVAVDAFLEIDPGFGRFGFLPSQWQAAFAALRDQST 166

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
            +L  +   +S     D                  + +  I   LASS  +L  P+  +Q
Sbjct: 167 VRLKGVYTHLSSPENDDVTRQQAGVFDAALADARAAGFDNITTMLASSRVMLAHPHLAYQ 226

Query: 212 LTRPGISLYGGTD-KINKSHPMQTVVTA-EARIILIRKALAGEL--VSYGGQKKLTRDSL 267
              PG  LYG  D +     P++ ++ A   RII +++  AG    + Y    +L R   
Sbjct: 227 AVDPGRLLYGALDAEWMVRAPLRPMLRAVRGRIIHVQEHPAGSTLGIGYAEPIRLERGVR 286

Query: 268 IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327
           I V  IG+ DG           H P +   G+  + G    ILG+ +   T+ DIT+   
Sbjct: 287 IGVVPIGFWDGL---------NHVPPL---GRVLVHGQAARILGRRSFQHTVIDITEIAQ 334

Query: 328 IEVGDYIQIFGPD----IKLDDVA 347
              G  + + G D    I +D++A
Sbjct: 335 ARTGSVVTLLGQDGDQSITIDEMA 358


>gi|309808567|ref|ZP_07702463.1| alanine racemase [Lactobacillus iners LactinV 01V1-a]
 gi|312874851|ref|ZP_07734870.1| alanine racemase [Lactobacillus iners LEAF 2053A-b]
 gi|325913186|ref|ZP_08175556.1| alanine racemase [Lactobacillus iners UPII 60-B]
 gi|308168195|gb|EFO70317.1| alanine racemase [Lactobacillus iners LactinV 01V1-a]
 gi|311089596|gb|EFQ48021.1| alanine racemase [Lactobacillus iners LEAF 2053A-b]
 gi|325477607|gb|EGC80749.1| alanine racemase [Lactobacillus iners UPII 60-B]
          Length = 375

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 158/386 (40%), Gaps = 48/386 (12%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V  ++
Sbjct: 10  KILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR    +  I VL    P    +  + ++   +  +  L   S  +S G      L
Sbjct: 70  EAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKQTSTFLS-GTKLKIHL 128

Query: 127 QVDTGFNRLGLSLQEAL----DF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            +D+G  R+G +  +A     D+  +H  ++     +  + +H + AD         Q++
Sbjct: 129 AIDSGMGRIGFNEDDAFLKANDYLLSHPEYD-----VEGMFTHFSTADCHDLEYFDSQVK 183

Query: 181 RFRTLISHYKGI------EASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KIN 227
           +F     H+K +           +S+  +        L R GI++YG          +I 
Sbjct: 184 KF----DHFKKMLRIKPRYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQ 239

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G  
Sbjct: 240 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----L 343
                      K  +     PI+G++ MD  M  + + +   VG  +++   D K    +
Sbjct: 299 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMP--VGTPVELISADAKAPNNI 345

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
             VA  + T +Y++   +  R  + Y
Sbjct: 346 KAVADYANTIHYEIACLLSDRVPREY 371


>gi|324995181|gb|EGC27093.1| alanine racemase [Streptococcus sanguinis SK678]
 gi|327469131|gb|EGF14603.1| alanine racemase [Streptococcus sanguinis SK330]
 gi|327473513|gb|EGF18933.1| alanine racemase [Streptococcus sanguinis SK408]
 gi|327489061|gb|EGF20856.1| alanine racemase [Streptococcus sanguinis SK1058]
          Length = 369

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 154/377 (40%), Gaps = 41/377 (10%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLDWLDLALDAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQVAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIEASL-ASSSGILLGPNYH----FQLTRPGISLYGGTDKINKS-------HPMQTVV 236
              + + + AS+S   L   +H        R G  +YG    +N S       +  ++ +
Sbjct: 192 LDNVPSLVHASNSATSL---WHRETVLNAVRLGDIIYG----LNPSGRVLALPYEFKSAL 244

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + ++ +++  AG  V YG          I    +GYADG+   + G D         
Sbjct: 245 SLVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFDV-------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
                I G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT
Sbjct: 297 ----LIDGQRCPIVGRVSMDQITVCLPQAYPL--GTSVVLIGNSGAETITATDVAEKRGT 350

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  I  R  + Y
Sbjct: 351 INYEVVCLISDRVPRVY 367


>gi|326442666|ref|ZP_08217400.1| alanine racemase [Streptomyces clavuligerus ATCC 27064]
          Length = 330

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 128/326 (39%), Gaps = 32/326 (9%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK NAYG G   +A A   AG +   V ++ EG+ LR   P+ARI VL  + PG    
Sbjct: 9   AVVKGNAYGHGAVPVAGAALEAGARALCVATLGEGLALRERFPRARIVVLGPVGPGSVPA 68

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
                L  V      L   S  +       Y ++V+ G NR G       D         
Sbjct: 69  ASRAGLECVAHDDASLEALSGAVE------YHIKVNLGLNRYG--FDRIPDRLREQPVGV 120

Query: 154 LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT 213
            GQ S     L         V ++QL RF             + +SS  L  P       
Sbjct: 121 FGQFSHAHVDL--------EVTALQLARFLEQCEAVPRATRHVCNSSAALSLPAARLDAV 172

Query: 214 RPGISLYGGTDKINKSH--PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
           R G +L G +   N S   P++  ++  + +  +R   AG  V Y G  ++TR ++  V 
Sbjct: 173 RSGSALLGVSLMTNPSSRLPLRPALSWISCLAQVRNLPAGAAVGYEGAHRVTRPTVTGVV 232

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331
            +GY DG+   L G       +V +G +         ++G ++MD     +     I  G
Sbjct: 233 PVGYGDGFVSRLVGT------TVLVGDEPAT------VIGSVSMDALTVALPRRFPI--G 278

Query: 332 DYIQIFGPDIKLDDVALASGTTNYDL 357
             + + G  + ++     +   N++L
Sbjct: 279 TPVTLIGDGLPMESHLRFASMANWEL 304


>gi|116628941|ref|YP_814113.1| alanine racemase [Lactobacillus gasseri ATCC 33323]
 gi|238853540|ref|ZP_04643912.1| alanine racemase [Lactobacillus gasseri 202-4]
 gi|282852616|ref|ZP_06261958.1| alanine racemase [Lactobacillus gasseri 224-1]
 gi|311111249|ref|ZP_07712646.1| alanine racemase [Lactobacillus gasseri MV-22]
 gi|122274061|sp|Q046E7|ALR_LACGA RecName: Full=Alanine racemase
 gi|116094523|gb|ABJ59675.1| Alanine racemase [Lactobacillus gasseri ATCC 33323]
 gi|238833836|gb|EEQ26101.1| alanine racemase [Lactobacillus gasseri 202-4]
 gi|282556358|gb|EFB61978.1| alanine racemase [Lactobacillus gasseri 224-1]
 gi|311066403|gb|EFQ46743.1| alanine racemase [Lactobacillus gasseri MV-22]
          Length = 376

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 153/378 (40%), Gaps = 32/378 (8%)

Query: 9   LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIKRNIENEMQHLEPGQKMLAVVKANGYGHGAVEVAKVADQIGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR       I VL  + P    I    ++   + ++  L    K L +  +     L
Sbjct: 71  ALELRRADITKTILVLGVVSPEYAPIAAANDISLTVPNLEWLKEAEKYLENSDLQLKIHL 130

Query: 127 QVDTGFNRLGLSLQEALDF-THNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            +D+G  R+G +  E  DF   N F  N     +  + +H A AD         Q E+F 
Sbjct: 131 GIDSGMGRIGFN--EDKDFIAANKFLENNDNFYIEGMFAHFASADSSDETYFKHQCEKFN 188

Query: 184 TLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-------MQT 234
            + S    K     + +++  +        L R GI +YG     N + P       +  
Sbjct: 189 HMKSLLTVKPKWIHVDNTAASIFHNGIKSDLVRFGIGIYGLNPSSNPNSPDLKSKIALDP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G         
Sbjct: 249 ALSFESELTHVKTIHQGDGVGYGSTFVADKDTIIGTVPVGYADGFIRKFQGF-------- 300

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS---G 351
               K  +     PI+G+I MD  M ++   + +     I    PD  L+++  A+    
Sbjct: 301 ----KVKVGNTYCPIVGRICMDQFMVEMPKEMPLGTKVVIISDNPD-DLNNIKAAADYVD 355

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++   +  R  + Y
Sbjct: 356 TIHYEVACLLNDRLPRVY 373


>gi|42518359|ref|NP_964289.1| alanine racemase [Lactobacillus johnsonii NCC 533]
 gi|32329446|emb|CAD70179.1| alanine racemase [Lactobacillus johnsonii]
 gi|41582644|gb|AAS08255.1| alanine racemase [Lactobacillus johnsonii NCC 533]
          Length = 376

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 151/380 (39%), Gaps = 36/380 (9%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIKRNLKNEMGHLEPGQKMLAVVKANGYGHGSVEVARVADKVGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHP 123
            ++LR       I VL  + P    I    N   V  +VP L +  +    L    +   
Sbjct: 71  ALELRRADITKPILVLGVVSPEYAPIAAVNN---VSLTVPNLEWLKEAEKYLKDANLQLK 127

Query: 124 YALQVDTGFNRLGLSLQEALDF-THNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L +D+G  R+G +  E  DF T N F  N     +  + +H A AD         Q E
Sbjct: 128 IHLGIDSGMGRIGFN--EDADFITANEFLENNDNFFIEGMFAHFASADSSDETYFKHQCE 185

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP------- 231
           +F  + S    K     + +++  +        L R GI +YG     N + P       
Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPNSPDLKSNIK 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G      
Sbjct: 246 LEPALSFESELTHVKTIHQGDGVGYGSTFVADEDTIIGTVPVGYADGFIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS- 350
                  K  +     PI+G+I MD  M  +   + +     I    P+ + +  A A  
Sbjct: 301 -------KVKVGDTYCPIVGRICMDQFMVKMPKKMPVGTKVTIISSNPNDQNNIKAAADY 353

Query: 351 -GTTNYDLLVRIGTRYAKFY 369
             T +Y++   +  R  + Y
Sbjct: 354 VDTIHYEVACLLNDRLPRVY 373


>gi|296875898|ref|ZP_06899959.1| alanine racemase [Streptococcus parasanguinis ATCC 15912]
 gi|296433139|gb|EFH18925.1| alanine racemase [Streptococcus parasanguinis ATCC 15912]
          Length = 370

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 165/384 (42%), Gaps = 51/384 (13%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGC----EKIAPALYNAGVQDFFVTS 64
           ++DL A+  N   ++  +   A   AVVK NAYG G     +K+AP      V  F V++
Sbjct: 12  RVDLDAIAFNVQQVSEHIPSQALKYAVVKANAYGHGVVAVTQKLAPQ-----VDGFCVSN 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-----CG 119
           ++E +++R    Q  I +L G+ P +   +   + I +  +V  L +  +L+       G
Sbjct: 67  MDEALEIREEGLQHPILIL-GVVPSETVNLAKEHDIRL--TVASLAWLDQLLGEEADLSG 123

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           +     ++VD+G  R+G    E +            ++  I +H A AD+        Q 
Sbjct: 124 LK--VHIKVDSGMGRIGFRTIEDIKVAERLLLAAGAEIEGIFTHFATADEADDRKFQAQY 181

Query: 180 ERFRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------H 230
             F+ +++  + +   +  ++S+  L   +  F   R G  +YG    +N S       +
Sbjct: 182 HFFKEVLAALETLPPIVHASNSATSLWHADTIFTAVRLGDVMYG----LNPSGSVLALPY 237

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++  + ++ +++  AG+ + YG          I    IGYADG+   +       
Sbjct: 238 EIKPALSLVSELVHVKQLEAGQDIGYGATYTTEESQWIGTIPIGYADGWIREMQNFHV-- 295

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDV 346
                      IKG   PI+G+++MD     + + L +  G  + + G     +I   +V
Sbjct: 296 ----------LIKGDYCPIVGRVSMDQVTVRLPEELPL--GTKVTLIGREGEKEITATEV 343

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A   GT NY+++  +  R  + YT
Sbjct: 344 ADYRGTINYEVVCLLSDRIPRDYT 367


>gi|20137235|sp|Q9F9L1|ALR_PISSA RecName: Full=Alanine racemase
 gi|10441347|gb|AAG17001.1|AF184152_4 alanine racemase [Piscirickettsia salmonis]
          Length = 166

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 16/160 (10%)

Query: 209 HFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
            +   RPGI LYG +   DK      +Q V+   +R+I +++   GE V YG   +   D
Sbjct: 12  RYDWVRPGIMLYGISPFADKNGVDLELQPVMHVVSRLISVKQLRQGESVGYGATWQCPED 71

Query: 266 SLIAVAAIGYADGYP-LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324
             + + ++GY DGYP L  SG       + FL     ++G    ++G+++MDM   D+  
Sbjct: 72  MQVGILSLGYGDGYPRLAASG-------TPFL-----VRGQRCALIGRVSMDMIAIDLRR 119

Query: 325 SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
                VG+ + ++G D+ ++++A   GT  Y+L+  +  R
Sbjct: 120 CPDAGVGEAVTVWGQDLPVEEIARHVGTIAYELVCNMPLR 159


>gi|160894017|ref|ZP_02074796.1| hypothetical protein CLOL250_01572 [Clostridium sp. L2-50]
 gi|156864395|gb|EDO57826.1| hypothetical protein CLOL250_01572 [Clostridium sp. L2-50]
          Length = 381

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 150/354 (42%), Gaps = 38/354 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L I   AL NN   +  L+  A+  AV+K NAYGLG  K A  L + G+ ++ VT + + 
Sbjct: 20  LTIKTNALDNNIRIIKRLANGAKVIAVLKGNAYGLGLTKFASFLQSKGIDNYGVTELSDA 79

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
           V LR       I ++  ++  ++     D ++   I+S        +  +  ++HP    
Sbjct: 80  VTLRRNGITGNILLMTPLYNSEDITTAIDHDITLSITSTDCAHVIDE-TAAYMNHPTVHA 138

Query: 126 -LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L +DTGF R G    +     +   + +  +++ I SH   A   + +    Q + F  
Sbjct: 139 HLCIDTGFGRYGFLCSDEKQIANTIQSLRHIKITGIFSHFHAAACRNEYYVKKQFQDFTH 198

Query: 185 LISHYK------GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           L    +      GI   ++SS+ ++  P+ +    R G S + G   +   +  + V   
Sbjct: 199 LCDALRKDGVPVGIR-HISSSTSMIKYPSMNLDAIRIG-SAFLGRLAVPNDYGFREVCNL 256

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL----------------- 281
            A +  I +  AG  + YG   KL+ ++  AV + GY  G  +                 
Sbjct: 257 SAYVDDIYELPAGHNIGYGHSFKLSHNAKTAVISAGYYHGLGMERHTDSRTNFFSPIRIY 316

Query: 282 -TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
             L G   + +P+         K Y +P+LG+I+M+  + D T   +I VGD +
Sbjct: 317 YKLKGTFHKKTPAASF------KDYRLPVLGQISMNSVIVDTT-GCNISVGDTV 363


>gi|223043272|ref|ZP_03613319.1| alanine racemase 2 [Staphylococcus capitis SK14]
 gi|222443483|gb|EEE49581.1| alanine racemase 2 [Staphylococcus capitis SK14]
          Length = 358

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 149/344 (43%), Gaps = 44/344 (12%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK+NAY  G E        AG+Q F  TS++E +++R   P A IF++  ++      
Sbjct: 27  AVVKNNAYHYGLEFSVKEFLKAGIQTFSTTSLKEAIRVREIAPHATIFLMNAVYE----- 81

Query: 94  IFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQEAL-DFTH 147
            FDT     +  ++P LT+Y +      +    L+ +   +R G      L E L D   
Sbjct: 82  -FDTVREYEIHMTLPSLTYYYEHKEDLRNIHVHLEFENLLHRSGFKDLEELHEVLEDHAQ 140

Query: 148 NSFNKKLGQLSLIISHLACADD---PSSHVN-SVQLERFRTLISH---YKGIEASLASS- 199
           N  + K+  +S I +H   AD+   P   +     L    TL+     +  I A  ++S 
Sbjct: 141 NKSDNKMI-ISGIWTHFGYADEFDVPEYDIERQAWLNVLNTLLDEGYSFDLIHAQNSASF 199

Query: 200 --SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELVS 255
              G ++ P  H    R GI+LYG     K+ +S  +Q  +T +  +I +R+  AG+   
Sbjct: 200 YREGQVVLP--HHTHARVGIALYGSRPYSKLKES-EIQQSLTVKGNVIQVREVNAGDYCG 256

Query: 256 YGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
           Y    + T++ + +AV  IGY DG       L S       + GK +      PI   + 
Sbjct: 257 YSFAYEATKNQTQLAVVDIGYGDGI------LKSRAQHEAIINGKRY------PIRA-LM 303

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           M     ++ D   +   D + ++  DI++D+        N + L
Sbjct: 304 MSHMFVEVDD--EVHAQDEVVLYNNDIRIDEFTFKGVGANSEQL 345


>gi|289422485|ref|ZP_06424328.1| alanine racemase 2 [Peptostreptococcus anaerobius 653-L]
 gi|289157057|gb|EFD05679.1| alanine racemase 2 [Peptostreptococcus anaerobius 653-L]
          Length = 372

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 146/351 (41%), Gaps = 44/351 (12%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL IDL AL  N   +  ++G     AVVK++AY  G E+     Y AGV+ F  TS+ +
Sbjct: 13  RLTIDLDALHKNARHLIGMTGGG-LIAVVKNDAYHFGLERAVETFYQAGVRFFATTSLRD 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            +++R       IF+L   +P ++   FD+     + +++  L F  +         Y L
Sbjct: 72  SIRIRDLYDDVDIFML---NPCRD---FDSLRDYSITATLASLDFLRENKDSMHDISYHL 125

Query: 127 QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +      R G  S +E L+    +    + +L  I +H + AD+     NS + E+   L
Sbjct: 126 EWAGQMRRSGCRSKKEVLETIRLAKESNI-KLDGIWTHFSWADEFDQE-NSYEKEKSDWL 183

Query: 186 --------ISHYKGIEASLASS--SGILLGPNYHFQLTRPGISLYG-----GTDKINKSH 230
                   I  +K ++A  ++S     LL  + H    R GISLYG     G D  N  H
Sbjct: 184 DILESAQKIHKFKVVQAQNSASLQRDGLLDNHSH---ARVGISLYGCPPYKGADLTNNHH 240

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +    T    II I+    GE + Y    K  + S + V  IGY DG            
Sbjct: 241 AL----TLSGSIISIKDLEIGESIGYCSSFKADKKSRVGVINIGYGDGLL---------- 286

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341
                +G    I G   P++  +     +    D  S++VGD    +G DI
Sbjct: 287 -RKRVMGHDVLINGRRYPLVSMMMSHTIVLLNEDDNSVKVGDQAIFYGQDI 336


>gi|315091525|gb|EFT63501.1| alanine racemase [Propionibacterium acnes HL110PA4]
          Length = 352

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 152/366 (41%), Gaps = 36/366 (9%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGVKLRLYTPQARIF 81
           M   +G+ +    VK +AYG G  +++  +      D+  V +V EG +L        I 
Sbjct: 1   MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGIPLPIL 60

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ 140
                 P        + +   +     L   SK  +  GV+    + VD+G  R+GL  +
Sbjct: 61  NPPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHIAVDSGMGRIGLCPE 120

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS----HYKGIEAS 195
              + T  +   K  ++  + +HL  +D P  +     +++ F T +S    H       
Sbjct: 121 RLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVSLVETHRGPFPLV 180

Query: 196 LASSSGILLGPNY-HFQLTRPGISLYG-----GTDKINKSHPMQTVVTAEARIILIRKAL 249
             ++SG +LG +     + R GI  YG       D+ +  HP  + ++    +  ++   
Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADL-HPALSWIS---HVTFVKTVS 236

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF--IKGYMV 307
            G+ + YG     +  + IA   +GYADG    LS              KG+  I+G + 
Sbjct: 237 VGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-------------KGYVLIRGSVH 283

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGT 363
           PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y++   I  
Sbjct: 284 PIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISYEITCAISK 343

Query: 364 RYAKFY 369
           R  + +
Sbjct: 344 RVNRCW 349


>gi|197285632|ref|YP_002151504.1| alanine racemase [Proteus mirabilis HI4320]
 gi|194683119|emb|CAR43692.1| putative alanine racemase [Proteus mirabilis HI4320]
          Length = 407

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 144/349 (41%), Gaps = 42/349 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I  +AL  N   + +L G   +  AV+K +AYG     +AP +    VQ   VT+ +E
Sbjct: 45  IEISRSALDFNVKKVQSLLGKQSSLCAVLKGDAYGHDLSLVAPIMIENNVQCIGVTNNQE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             ++R    + R   L  +    E+ +       V   +  L    +L +        + 
Sbjct: 105 LKEVRDLGFKGR---LMRVRNATEQEMAQATNYNVEELIGDLDMAKRLDAIAKQQNKVIP 161

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSHVNSVQ- 178
           +    N  G+S +  L+  + S  +K  Q+S         I+SH      P   VN V+ 
Sbjct: 162 IHLALNSGGMS-RNGLEVDNKSGLEKAKQISQLANLKVVGIMSHY-----PEEDVNKVRE 215

Query: 179 -LERFRTL---ISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
            L RF+     +    G+E +     +A++   +  P     + R G   YG T     S
Sbjct: 216 DLARFKQQSQKVLEVMGLERNNVTLHMANTFATITVPESWLDMVRVGGIFYGDTIA---S 272

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              + V+T ++ I  I     G  V Y     L RDS++A   +GYADGY    S     
Sbjct: 273 TDYKRVMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN---- 328

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                   G   I G  VP+LGK +M+  M DIT   +I+ GD +  FG
Sbjct: 329 -------AGHALIAGQRVPVLGKTSMNTVMVDITSLNNIKPGDEVVFFG 370


>gi|197334487|ref|YP_002155497.1| alanine racemase [Vibrio fischeri MJ11]
 gi|197315977|gb|ACH65424.1| alanine racemase [Vibrio fischeri MJ11]
          Length = 403

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 161/382 (42%), Gaps = 42/382 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID  A +NN  ++ A L    +  A++K +AYG G E +  ++    V+   +TS EE
Sbjct: 42  LEIDTQAFQNNIDTLRASLEQGTKVCAIMKADAYGNGIEGLMASVIERNVECIGITSNEE 101

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
              +R       +  +    P + +      +  +I S  Q    +KL     +  P  L
Sbjct: 102 ARIVRAKGFVGELMRVRAASPNEIESGLQYKIEELIGSSEQANIIAKLAKQNDTIIPVHL 161

Query: 127 QVDTG-FNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHL--ACADDPSSHVNSV 177
            ++ G   R GL L      +EAL+   N     +G    I++H      D+  + +N  
Sbjct: 162 ALNAGGMGRNGLDLSQPQGKKEALNIAFNGHVNIVG----IMTHFPNESVDEIRTKLNLF 217

Query: 178 QLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           + E  + LI   +     I   +A+S   +  P  H  + RPG  LYG  D  N     +
Sbjct: 218 KQES-QWLIDEAQLNRDDITLHVANSYTTINLPEAHLDMVRPGGLLYG--DMPNNPE-YK 273

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +V  +  +  +     G  + Y     L RDS++A   +GY+DGY  ++          
Sbjct: 274 RIVQFKTSVASLNYLPKGSTIGYSSTYVLGRDSILANLPLGYSDGYVRSI---------- 323

Query: 294 VFLGGKGF--IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
              G  G+  I G    ++G  +M+ TM D+TD  +++ GD + +FG      I+  ++ 
Sbjct: 324 ---GNNGYVLINGQKANVVGVTSMNTTMVDVTDIKNVQPGDEVVLFGKQNEFTIEAKEME 380

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             S  +  +L V  G    K Y
Sbjct: 381 AFSSRSMPELYVIWGATNPKIY 402


>gi|315037507|ref|YP_004031075.1| alanine racemase [Lactobacillus amylovorus GRL 1112]
 gi|325955971|ref|YP_004286581.1| alanine racemase [Lactobacillus acidophilus 30SC]
 gi|312275640|gb|ADQ58280.1| alanine racemase [Lactobacillus amylovorus GRL 1112]
 gi|325332536|gb|ADZ06444.1| alanine racemase [Lactobacillus acidophilus 30SC]
 gi|327182803|gb|AEA31250.1| alanine racemase [Lactobacillus amylovorus GRL 1118]
          Length = 376

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 160/388 (41%), Gaps = 52/388 (13%)

Query: 9   LKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A++ N  + M  L    +  AVVK NAYG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIRRNLENEMKHLEPGQKMLAVVKANAYGHGAVEVAKVADEVGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHP 123
            ++LR       I VL  + P    I     +  V  +VP L +  +    L    +   
Sbjct: 71  ALQLRHNDIVKPILVLGVVSPEYAPI---AAVNGVSLTVPNLEWLKEAEKYLEKDNLQLK 127

Query: 124 YALQVDTGFNRLGLSLQEALDF-THNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L +D+G  R+G +  E  DF   N F  N     +  + +H A AD         Q++
Sbjct: 128 IHLGIDSGMGRIGFNEDE--DFIAANKFLENNDNFFVEGMFAHFASADSSDESYFERQIK 185

Query: 181 RFR------TLISHYKGIEASLAS--SSGILLGPNYHFQLTRPGISLYG-------GTDK 225
           +FR      T+   +  I+ + AS   SGI         L R GI +YG        T  
Sbjct: 186 KFRHMESLLTVKPKWIHIDNTAASIFHSGI------KSDLVRFGIGIYGLNPSSTPDTPD 239

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +  +  ++  ++ E+ +  ++    G+ VSYG       D++I    +GYADG+     G
Sbjct: 240 LKPAFKLEPALSFESELTHVKTIHKGDGVSYGSTFVADEDTIIGTVPVGYADGWIRKFQG 299

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   V +G K         I+G+I MD  M  + + +   VG  ++I   D    +
Sbjct: 300 F------KVKVGDK------YCTIVGRICMDQFMVKMPEKMP--VGTKVEIISADPTAPN 345

Query: 346 VALASG----TTNYDLLVRIGTRYAKFY 369
              A+     T +Y++   +  R  + Y
Sbjct: 346 NIKAAADYVDTIHYEVACLLNDRLPRVY 373


>gi|329666669|gb|AEB92617.1| alanine racemase [Lactobacillus johnsonii DPC 6026]
          Length = 376

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 150/380 (39%), Gaps = 36/380 (9%)

Query: 9   LKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIKRNLENEMEHLEPGQKMLAVVKANGYGHGAVEVARVADKVGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHP 123
            ++LR       I VL  + P    I    N   V  +VP L +  +    L    +   
Sbjct: 71  ALELRRADITKPILVLGVVSPEYAPIAAVNN---VSLTVPNLEWLKEAEKYLKDANLQLK 127

Query: 124 YALQVDTGFNRLGLSLQEALDF-THNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L +D+G  R+G +  E  DF   N F  N     +  + +H A AD         Q E
Sbjct: 128 IHLGIDSGMGRIGFN--EDADFIAANEFLENNDNFFIEGMFAHFASADSSDETYFKHQCE 185

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP------- 231
           +F  + S    K     + +++  +        L R GI +YG     N S P       
Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPSSPDLKSNIK 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G      
Sbjct: 246 LEPALSFESELTHVKTIHQGDGVGYGSTFVADEDTIIGTVPVGYADGFIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS- 350
                  K  +     PI+G+I MD  M  +   + +     I    P+ + +  A A  
Sbjct: 301 -------KIKVGDTYCPIVGRICMDQFMVKMPKKMPVGTKVTIISSNPNDQNNIKAAADY 353

Query: 351 -GTTNYDLLVRIGTRYAKFY 369
             T +Y++   +  R  + Y
Sbjct: 354 VDTIHYEVACLLNDRLPRVY 373


>gi|50955527|ref|YP_062815.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952009|gb|AAT89710.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 372

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 163/393 (41%), Gaps = 53/393 (13%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S  F  L +DL A+  N   +   +G     AVVK +AYG G  + A A    G     V
Sbjct: 2   SAPFRELVVDLDAVSANVVRLRERAGTPHLMAVVKADAYGHGAVESACAALAGGADWLGV 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKII--FDTNLIPVISSVPQLTFYSKLMSCGV 120
             + E  +LR    +A +  L  +H   E  +      +   +SS+  L   +       
Sbjct: 62  ADLSEASQLRAAGIEAPL--LAWLHDPDEDFVAAIAAGVDIGVSSLAHLEAAAAAGGGSP 119

Query: 121 SHPYALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNS 176
           +    L+++TG +R GL  +  EA+ F      ++ G++ +  + SHL+ A         
Sbjct: 120 AF-VQLKLETGLSRNGLPEEQWEAV-FARAHELERSGRIVVRGVFSHLSNASPAEDRAAI 177

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINKSHPMQ 233
              ER     +   G+   L   +        P   F L R G+++YG          + 
Sbjct: 178 AAYERGLAR-AEAAGLAPELRHIAASAAAISLPEARFTLVRLGLAIYG----------LS 226

Query: 234 TVVTAEARIILIRKAL-------------AGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
               A A  + +R AL             AG+ VSY    +  R++ +A+  +GY DG P
Sbjct: 227 PFGAASATELGLRPALTLRARVAAVRRVPAGKGVSYDYTYRTERETTLALVPVGYGDGLP 286

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
              S L       V +GG+ F       + G+I MD  + D+ D+  + VGD + +FG  
Sbjct: 287 RHASNLG-----PVSIGGERFR------VSGRIAMDQFVVDVGDA-PVAVGDEVVLFGDP 334

Query: 341 IK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
            +     DD A A+ T NY+++ R+G R  + +
Sbjct: 335 ARGVPGADDWAAAAETINYEIVTRLGGRLRRTF 367


>gi|323465799|gb|ADX69486.1| Alanine racemase [Lactobacillus helveticus H10]
          Length = 376

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 135/333 (40%), Gaps = 26/333 (7%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A++ N  + M  L  N +  AVVK N YG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR       I VL  + P    I    N+   + ++  L    K L    +     L
Sbjct: 71  ALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDTEKYLAKENLQLKIHL 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +D+G  R+G +  +      N F  N     +  + +H A AD         Q E+F+ 
Sbjct: 131 GIDSGMGRIGFNEDDEF-VAANKFLENNDNFFIEGMFAHFASADSDDETYFKHQCEKFKH 189

Query: 185 LIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-------MQTV 235
           + S    K     + +++  +        L R GI +YG     N S P       ++  
Sbjct: 190 MKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIELEPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G        V 
Sbjct: 250 LSFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------KVK 303

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
           +G +        PI+G+I MD  M  +   + +
Sbjct: 304 VGDE------YCPIVGRICMDQFMVKMPKKMPV 330


>gi|54310452|ref|YP_131472.1| alanine racemase [Photobacterium profundum SS9]
 gi|46914893|emb|CAG21670.1| putative alanine racemase [Photobacterium profundum SS9]
          Length = 404

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 147/346 (42%), Gaps = 36/346 (10%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID  A   N   + N L  + +  A++K +AYG G   + P++    V    +TS EE
Sbjct: 43  LEIDTQAFSGNIQLLQNQLKADTKICAIMKADAYGNGIAGLMPSIIANQVPCVGITSNEE 102

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
              +R +    +I  +      + +      +  +I +  Q     ++    G + P  L
Sbjct: 103 ARVVRKHGFIGKIMRVRAASKNEIEGGLQYQMEELIGTKAQADQIIEIARANGTTIPVHL 162

Query: 127 QVDT-GFNRLGLSLQ------EALDFTHNSFNKKLGQLSLIISHLACA--DDPSSHVNSV 177
            ++T G  R GL L       E ++   +   + +G    +++H      D+    V   
Sbjct: 163 ALNTSGMGRNGLDLTTYEGQVEGVEIAGDPNLEIVG----MMTHFPNEGLDEIKRKVKRF 218

Query: 178 QLERFRTLIS---HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           ++E    + S     K +   +A+S   L  P  H  + RPG  LYG       + P Q 
Sbjct: 219 KVETKWLMDSTDLKRKDVTLHVANSYITLNLPEAHLDMVRPGGMLYG---DYPATAPYQR 275

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +V+ +  +  +    AG  + YG    L RDS++A   IGY+DG+  +            
Sbjct: 276 IVSFKTHVASLHHFPAGSTIGYGSTAVLERDSVLANLPIGYSDGFARS------------ 323

Query: 295 FLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            LG K    I G    ++G ++M+ TM D+TD + ++  + + IFG
Sbjct: 324 -LGNKAEVLINGQRARVMGMVSMNTTMVDVTDIVDVQTNEEVVIFG 368


>gi|227499508|ref|ZP_03929615.1| possible alanine racemase [Anaerococcus tetradius ATCC 35098]
 gi|227218387|gb|EEI83638.1| possible alanine racemase [Anaerococcus tetradius ATCC 35098]
          Length = 373

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 147/353 (41%), Gaps = 44/353 (12%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
            AV+K NAYGLG   IA  +    V  F V S  E   LR    +  I +L  + P +  
Sbjct: 30  CAVIKANAYGLGAVPIANYI-EEYVSYFAVASFNEAKVLRASNIKKPILILGYVSPEEAI 88

Query: 93  IIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
           +    N+ IP+           KL S    H   + +DTG  RLG    E  D       
Sbjct: 89  LSSKYNIEIPIYDLAYAKQINDKLDSKLDVH---IALDTGHGRLGFRPFEFEDILK---L 142

Query: 152 KKLGQLSL--IISHLACADDPSSHVNSVQ---LERFRTLISHYKGIEASLASSSGILLGP 206
           K L  L +    SH + AD+        Q      F+  +     IE    ++S   +  
Sbjct: 143 KDLQNLHIKGAFSHFSTADEEDIEFTQRQNKIFNGFKKDLGREFDIENFHIANSAATIFH 202

Query: 207 NYHFQLTRPGISLYG----------GTDKINKSHPMQTVVTAEARIILIRKALAGELVSY 256
           N    + R GISLYG             +++K+  +++VV+       ++    G  +SY
Sbjct: 203 NIKGDMQRIGISLYGIYPSEYLLERKDVELSKAFSIKSVVS------FVKNIEKGTSLSY 256

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           G      +D  IA  +IGYADG+    S             G+  I G +  + G++ MD
Sbjct: 257 GRSFIADKDMKIATISIGYADGFFRAFSN-----------KGEVLINGKIAKVCGRVCMD 305

Query: 317 MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             M D+++ + + +GD ++I+ PD+  +  A   GT  Y+L+  +  R  + Y
Sbjct: 306 QIMVDVSN-IDVNIGDEVEIY-PDLYKE--ANKIGTIPYELMTALSLRVIRVY 354


>gi|332360532|gb|EGJ38342.1| alanine racemase [Streptococcus sanguinis SK1056]
          Length = 369

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 150/370 (40%), Gaps = 27/370 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  +              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWMDLALDAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   +    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEVIHR-LQAAGAVAEGIFTHFATADEVDHYKFEAQLARFHQILSE 191

Query: 189 YKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEARII 243
              +   +  ++S+  L          R G  +YG       +   +  +  ++  + ++
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALSLVSELV 251

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +++  AG  V YG          I    +GYADG+   + G D              I 
Sbjct: 252 HVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFDV------------LID 299

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLV 359
           G + PI+G+++MD     +  S  +  G  + + G      I + DVA   GT NY+++ 
Sbjct: 300 GQLCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITVTDVAEKRGTINYEVVC 357

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 358 LISDRVPRVY 367


>gi|309809615|ref|ZP_07703472.1| alanine racemase [Lactobacillus iners SPIN 2503V10-D]
 gi|312871527|ref|ZP_07731620.1| alanine racemase [Lactobacillus iners LEAF 3008A-a]
 gi|308170096|gb|EFO72132.1| alanine racemase [Lactobacillus iners SPIN 2503V10-D]
 gi|311092922|gb|EFQ51273.1| alanine racemase [Lactobacillus iners LEAF 3008A-a]
          Length = 375

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 158/386 (40%), Gaps = 48/386 (12%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V  ++
Sbjct: 10  KILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR    +  I VL    P    +  + ++   +  +  L   S  +S G      L
Sbjct: 70  EAIELRKAGIKVPILVLGITLPKFALLAAENDISLTVGDLDWLKQASTFLS-GTKLKIHL 128

Query: 127 QVDTGFNRLGLSLQEAL----DF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            +D+G  R+G +  +A     D+   H  ++     +  + +H + AD         Q++
Sbjct: 129 AIDSGMGRIGFNEDDAFLKANDYLLAHPEYD-----VEGMFTHFSTADCHDLEYFDSQVK 183

Query: 181 RFRTLISHYKGI------EASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KIN 227
           +F     H+K +           +S+  +     +  L R GI++YG          +I 
Sbjct: 184 KF----DHFKKMLRIKPKYIHCDNSAASIFNRQVNSDLVRYGIAMYGLNPSSAPHGIEIQ 239

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G  
Sbjct: 240 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----L 343
                      K  +     PI+G++ MD  M  + + +   VG  +++   D K    +
Sbjct: 299 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMP--VGTPVELISADAKAPNNI 345

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
             VA  + T +Y++   +  R  + Y
Sbjct: 346 KAVADYANTIHYEIACLLSDRVPREY 371


>gi|238022778|ref|ZP_04603204.1| hypothetical protein GCWU000324_02689 [Kingella oralis ATCC 51147]
 gi|237865981|gb|EEP67117.1| hypothetical protein GCWU000324_02689 [Kingella oralis ATCC 51147]
          Length = 410

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 143/341 (41%), Gaps = 26/341 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+ID  A   N  ++   L G  +  AV+K +AYG   E + P +    +    +TS +E
Sbjct: 48  LEIDAAAFGRNLEAVKKMLGGKQKICAVIKGDAYGNSIELLMPQIIKHKIPCVGITSNDE 107

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
              +R    +  +  L     G+ +  F  N+  +  ++             G      L
Sbjct: 108 ARVVRASGYKGTVARLRTTTLGEIEDGFQYNIEELFGNLKAAQLADAAAAKRGKKLNIHL 167

Query: 127 QVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACAD--DPSSHVNSVQLER 181
            ++ G  +R GL+L             KL  L++  I++H    D  D    V     E+
Sbjct: 168 ALNAGGMDRNGLALDTESGKADALAIAKLPHLNIVGIMTHFPVEDVADVKKGVQRFD-EQ 226

Query: 182 FRTLISHYKGIEASL----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
            + LI   K   + L    A+S   +  P   F + RPG  LYG  + I     ++ V+ 
Sbjct: 227 SKWLIQAAKLDRSKLTLHTANSFTTVSVPEGRFDMVRPGALLYG--EPIGGKQ-LEYVMA 283

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++R+  + +   G  V Y     L RDS +A    GY+DGY    +             
Sbjct: 284 FKSRVGSVNRYPKGSTVGYDRTFTLKRDSRLANLPFGYSDGYRRAFTN-----------K 332

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           G   I+G+ VP++GKI+M+ TM D+TD   I+  D + IFG
Sbjct: 333 GHVLIRGHKVPVVGKISMNTTMVDVTDFPDIQANDEVVIFG 373


>gi|332654258|ref|ZP_08420002.1| alanine racemase [Ruminococcaceae bacterium D16]
 gi|332517344|gb|EGJ46949.1| alanine racemase [Ruminococcaceae bacterium D16]
          Length = 400

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 151/389 (38%), Gaps = 54/389 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           L +D+  ++ N  ++      A+   V+KDNAYGLG E +   +     +    V  V E
Sbjct: 38  LSVDMKRVRRNVATVLEELQGAQLIPVLKDNAYGLGLEAMGHVMEEFPQITTLAVAQVGE 97

Query: 68  GVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           G  LR       I +L G+  H  +  +  D  L  V              S G      
Sbjct: 98  GAALRQAGITREILILGGVPAHLLRAAVELDLTL-SVGRLELLPVLALLGQSAGRRVKIQ 156

Query: 126 LQVDTGFNRLGL-------SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           ++++TG NR G+        L E      N F     Q+    SH A  +D  +     Q
Sbjct: 157 IKIETGLNRTGVMPGAELAHLLEEWRSARNHF-----QIMGAFSHFADLED--TERTRQQ 209

Query: 179 LERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            E F   +   +  G+E  L   ++S+     P Y     R G  LY         HP Q
Sbjct: 210 YELFLEGVEQLQAGGMEIPLRHISASAAHEQFPQYRLDGVRIGRRLY-------MDHPTQ 262

Query: 234 ------TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
                    T    I  +R   AG  + YGG+  L RDS +A  A+GY DG    L  + 
Sbjct: 263 PTGRVSETATWRTWITGLRTLQAGSPLGYGGKVFLERDSTVATIAVGYGDGLSEELVRV- 321

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IK 342
             H P V +GG+          L    MD T+ D+T  +   VGD + +FG D     + 
Sbjct: 322 --HGP-VLVGGE-------RARLMACCMDQTLVDVT-GIPCRVGDPVTLFGWDEQGNLLA 370

Query: 343 LDDVALASGT-TNYDLLVRIGTRYAKFYT 370
             +VAL  G      L  ++  R A+ Y+
Sbjct: 371 SQEVALLVGEDEGCGLTAQLSPRVARIYS 399


>gi|213582016|ref|ZP_03363842.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 113

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 11/115 (9%)

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
           AGE V YGG   +T++  I + A GYADGYP         H+P+   G    + G     
Sbjct: 4   AGERVGYGGGYSVTQEQRIGIVAAGYADGYP--------RHAPT---GTPVLVDGIRTRT 52

Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y LL  +  R
Sbjct: 53  VGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLLCAVAPR 107


>gi|325693570|gb|EGD35489.1| alanine racemase [Streptococcus sanguinis SK150]
          Length = 369

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 150/374 (40%), Gaps = 35/374 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAQLPQTTEKWAVVKANAYGHGAIEVSRYI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALSLARKGKVSLTVASLEWLDLALTAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLARFHQILSE 191

Query: 189 YKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------HPMQTVVTAE 239
              +   +  ++S+  L          R G  +YG    +N S       +  +  ++  
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYG----LNPSGRVLELPYEFKPALSLV 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ +++  AG  V YG          I    +GYADG+   + G D            
Sbjct: 248 SELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFDV----------- 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             I G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT NY
Sbjct: 297 -LIDGQRCPIVGRVSMDQITVRLPRAYPL--GTPVVLIGNSGAETITATDVAEKRGTINY 353

Query: 356 DLLVRIGTRYAKFY 369
           +++  I  R  + Y
Sbjct: 354 EVVCLISDRVPRVY 367


>gi|297519923|ref|ZP_06938309.1| alanine racemase [Escherichia coli OP50]
          Length = 202

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 20/206 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS------SVPQLTFYSKLMSCGVSHPY 124
           LR       + +L G         FD   +P IS      +V      + L    +  P 
Sbjct: 66  LRAGGITKPVLLLEG--------FFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  
Sbjct: 118 TVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAI 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPN 207
           F T      G + S+A+S GILL P 
Sbjct: 178 FNTFCEGKPG-QRSIAASGGILLWPQ 202


>gi|328463455|gb|EGF35106.1| alanine racemase [Lactobacillus helveticus MTCC 5463]
          Length = 376

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 134/331 (40%), Gaps = 26/331 (7%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A++ N  + M  L  N +  AVVK N YG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR       I VL  + P    I    N+   + ++  L    K L    +     L
Sbjct: 71  ALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDAEKYLAKENLQLKIHL 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +D+G  R+G +  +      N F  N     +  + +H A AD         Q E+F+ 
Sbjct: 131 GIDSGMGRIGFNEDDEF-VAANKFLENNDNFFIEGMFAHFASADSDDETYFKHQCEKFKH 189

Query: 185 LIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-------MQTV 235
           + S    K     + +++  +        L R GI +YG     N S P       ++  
Sbjct: 190 MKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIELEPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G        V 
Sbjct: 250 LSFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------KVK 303

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
           +G +        PI+G+I MD  M  +   +
Sbjct: 304 VGDE------YCPIVGRICMDQFMVKMPKKM 328


>gi|261345933|ref|ZP_05973577.1| alanine racemase [Providencia rustigianii DSM 4541]
 gi|282566018|gb|EFB71553.1| alanine racemase [Providencia rustigianii DSM 4541]
          Length = 407

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 139/343 (40%), Gaps = 30/343 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I  +AL  N   + AL G+     AV+K +AYG     + P +    VQ   +TS  E
Sbjct: 45  IEISHSALDYNIKKVQALLGDKTGMCAVLKGDAYGHDLTLVTPVMIENNVQCIGLTSNSE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH----P 123
             ++R      R   L  +    EK +       V   +  L    +L +  V      P
Sbjct: 105 LKQVRDLGFNGR---LMRVRNATEKEMAQATEFNVEELIGNLEMAQRLNAIAVKQGKIIP 161

Query: 124 YALQVDT-GFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180
             L +++ G +R GL +  +          +L  L +  I+SH    D      + V+ +
Sbjct: 162 IHLALNSAGMSRNGLEVGTSTGLQQAKLISELPNLKIVGIMSHYPEEDAAQIRKDLVKFK 221

Query: 181 RFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
           +    +    G++       +A++   L  P     + R G   YG T     +   + V
Sbjct: 222 KQSQQVLDITGLKREDVTLHVANTYATLTVPESWLDMVRVGGIFYGDTVA---TKDYKRV 278

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ I  +     G  V Y     L RDS++A   +GYADGY    S           
Sbjct: 279 MTFKSNIAAVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN---------- 328

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
             G   I G  VP+LGK +M+  + D+TD  +++ GD +  FG
Sbjct: 329 -AGHVLINGQRVPVLGKTSMNTVVIDVTDIKNVQPGDEVVFFG 370


>gi|315653948|ref|ZP_07906864.1| alanine racemase [Lactobacillus iners ATCC 55195]
 gi|315488644|gb|EFU78290.1| alanine racemase [Lactobacillus iners ATCC 55195]
          Length = 375

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 157/386 (40%), Gaps = 48/386 (12%)

Query: 8   RLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V  ++
Sbjct: 10  KILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR    +  I VL    P    +  + ++   +  +  L   S  +S G      L
Sbjct: 70  EAIELRKAGIKVPILVLGITLPKFALLAAENDISLTVGDLDWLKQASTFLS-GTKLKIHL 128

Query: 127 QVDTGFNRLGLSLQEAL----DF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            +D+G  R+G +  +A     D+   H  ++     +  + +H + AD         Q++
Sbjct: 129 AIDSGMGRIGFNEDDAFLKANDYLLAHPEYD-----VEGMFTHFSTADCHDLEYFDSQVK 183

Query: 181 RFRTLISHYKGI------EASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KIN 227
           +F     H+K +           +S+  +        L R GI++YG          +I 
Sbjct: 184 KF----DHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQ 239

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G  
Sbjct: 240 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----L 343
                      K  +     PI+G++ MD  M  + + +   VG  +++   D K    +
Sbjct: 299 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMP--VGTPVELISADAKAPNNI 345

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
             VA  + T +Y++   +  R  + Y
Sbjct: 346 KAVADYANTIHYEIACLLSDRVPREY 371


>gi|312868223|ref|ZP_07728423.1| alanine racemase [Streptococcus parasanguinis F0405]
 gi|311095968|gb|EFQ54212.1| alanine racemase [Streptococcus parasanguinis F0405]
          Length = 370

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 164/382 (42%), Gaps = 47/382 (12%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGC----EKIAPALYNAGVQDFFVTS 64
           ++DL A+  N   + + +   A   AVVK NAYG G     +K+AP      V  F V++
Sbjct: 12  RVDLDAIAFNVQQVSDHIPSQALKYAVVKANAYGHGVVAVTKKLAPQ-----VDGFCVSN 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-- 122
           ++E +++R    Q  + +L G+ P +   +   + I +  +V  L +  +L+        
Sbjct: 67  MDEALEIREEGLQHPLLIL-GVVPSETVNLAKEHDIRL--TVASLAWLVQLLGQEADLSG 123

Query: 123 -PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++VD+G  R+G    E +            ++  I +H A AD+        Q + 
Sbjct: 124 LKVHIKVDSGMGRIGFRTIEEIKEAERLLIAAGAEIEGIFTHFATADEADDRKFQAQYQF 183

Query: 182 FRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------HPM 232
           F+ +++  + +   +  ++S+  L   +  F   R G  +YG    +N S       + +
Sbjct: 184 FKEVLAALETLPPIVHASNSATSLWHADTIFTAVRLGDVMYG----LNPSGSVLALPYEI 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  + ++ +++  AG+ + YG          I    IGYADG+   +         
Sbjct: 240 KPALSLVSELVHVKQLEAGQDIGYGATYTTEEPQWIGTIPIGYADGWIREMQNFHV---- 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    IKG   PI+G+++MD     + + L +  G  + + G     +I   +VA 
Sbjct: 296 --------LIKGEFCPIVGRVSMDQITVRLPEELPL--GTKVTLIGREGEKEITATEVAD 345

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
             GT NY+++  +  R  + YT
Sbjct: 346 YRGTINYEVVCLLSDRIPRDYT 367


>gi|226327902|ref|ZP_03803420.1| hypothetical protein PROPEN_01783 [Proteus penneri ATCC 35198]
 gi|225203606|gb|EEG85960.1| hypothetical protein PROPEN_01783 [Proteus penneri ATCC 35198]
          Length = 407

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 141/348 (40%), Gaps = 40/348 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I  +AL  N   + +L G+  +  AV+K +AYG     +AP +    VQ   VT+ +E
Sbjct: 45  IEISRSALDFNVKKVQSLLGDKSSLCAVLKGDAYGHDLSLVAPVMIENNVQCIGVTNNQE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH----P 123
             ++R    Q R   L  +    E+ +       V   +  L    KL +         P
Sbjct: 105 LKEVRDLGFQGR---LMRVRNATEQEMAQATSYNVEELIGNLDMAKKLDAIAKQQNKVIP 161

Query: 124 YALQVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ-- 178
             L +++G  +R GL +             +L  L +  I+SH      P    + V+  
Sbjct: 162 IHLALNSGGMSRNGLEVNNKAGLEEAKQIAQLANLKVVGIMSHY-----PEEDADKVRED 216

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           L RF+              K +   +A++   +  P     + R G   YG T     S 
Sbjct: 217 LARFKQQSQKVLDVTGLNPKEVTLHMANTFATITVPGSWLDMVRVGGIFYGDTIA---ST 273

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             + V+T ++ I  I     G  V Y     L RDS++A   +GYADGY    S      
Sbjct: 274 DYKRVMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN----- 328

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                  G   I G  VP+LGK +M+  + DITD  +I+ GD +  FG
Sbjct: 329 ------AGHALIGGQRVPVLGKTSMNTVIVDITDLKNIKSGDEVVFFG 370


>gi|186895776|ref|YP_001872888.1| alanine racemase [Yersinia pseudotuberculosis PB1/+]
 gi|186698802|gb|ACC89431.1| alanine racemase [Yersinia pseudotuberculosis PB1/+]
          Length = 409

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 151/361 (41%), Gaps = 36/361 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I   AL  N   M  L  N  T  A++K +AYG     + P +    VQ   V S +E
Sbjct: 47  LEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASNQE 106

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
              +R   +T Q        +   Q+ + +D   LI   +   QL   +KL    +    
Sbjct: 107 LKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRIHL 166

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           AL    G +R GL + +A           L  L++  I+SH    D  +S + +  L RF
Sbjct: 167 ALN-SAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPVED--ASEIKA-DLARF 222

Query: 183 RTLIS--------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +              + I+  +A++   L  P+    + R G   YG T     S   + 
Sbjct: 223 QQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTIA---STEYKR 279

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S          
Sbjct: 280 VMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN--------- 330

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   I+G  +P+LGK +M+  M D+TD   + +GD + +FG     +I+ +++   S
Sbjct: 331 --AGHVIIQGQRLPVLGKTSMNTVMVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIEDLS 388

Query: 351 G 351
           G
Sbjct: 389 G 389


>gi|268318829|ref|YP_003292485.1| hypothetical protein FI9785_335 [Lactobacillus johnsonii FI9785]
 gi|262397204|emb|CAX66218.1| alr [Lactobacillus johnsonii FI9785]
          Length = 376

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 135/337 (40%), Gaps = 34/337 (10%)

Query: 9   LKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIKRNLENEMEHLEPGQKMLAVVKANGYGHGAVEVARVADKVGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHP 123
            ++LR       I VL  + P    I    N   V  +VP L +  +    L    +   
Sbjct: 71  ALELRRADITKPILVLGVVSPEYAPIAAVNN---VSLTVPNLEWLKEAEKYLKDANLQLK 127

Query: 124 YALQVDTGFNRLGLSLQEALDF-THNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L +D+G  R+G +  E  DF   N F  N     +  + +H A AD         Q E
Sbjct: 128 IHLGIDSGMGRIGFN--EYADFIAANEFLENNDNFFIEGMFAHFASADSSDETYFKHQCE 185

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHP 231
           +F  + S    K     + +++  +        L R GI +YG        +  +  + P
Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPNSSDLKSNIP 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G      
Sbjct: 246 LEPALSFESELTHVKTIHQGDGVGYGSTFIADEDTIIGTVPVGYADGFIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
                  K  +     PI+G+I MD  M  +   + +
Sbjct: 301 -------KVKVGDTYCPIVGRICMDQFMVKMPKKMPV 330


>gi|227888877|ref|ZP_04006682.1| alanine racemase [Lactobacillus johnsonii ATCC 33200]
 gi|227850570|gb|EEJ60656.1| alanine racemase [Lactobacillus johnsonii ATCC 33200]
          Length = 376

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 151/380 (39%), Gaps = 36/380 (9%)

Query: 9   LKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIKRNLENEMEHLEPGQKMLAVVKANGYGHGAVEVARVADKVGTAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHP 123
            ++LR       I VL  + P    I    N   V  +VP L +  +    L    +   
Sbjct: 71  ALELRRADITKPILVLGVVSPEYAPIAAVNN---VSLTVPNLEWLKEAEKYLKDANLQLK 127

Query: 124 YALQVDTGFNRLGLSLQEALDF-THNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L +D+G  R+G +  E  DF   N F  N     +  + +H A AD         Q E
Sbjct: 128 IHLGIDSGMGRIGFN--EYADFIAANEFLENNDNFFIEGMFAHFASADSSDETYFKHQCE 185

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHP 231
           +F  + S    K     + +++  +        L R GI +YG        +  +  + P
Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHNGIKSDLVRFGIGIYGLNPSSNPNSPDLKSNIP 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G      
Sbjct: 246 LEPALSFESELTHVKTIHQGDGVGYGSTFVADEDTIIGTVPVGYADGFIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS- 350
                  K  +     PI+G+I MD  M  +   + +     I    P+ + +  A A  
Sbjct: 301 -------KVKVGDTYCPIVGRICMDQFMVKMPKKMPVGTKVTIISSNPNDQNNIKAAADY 353

Query: 351 -GTTNYDLLVRIGTRYAKFY 369
             T +Y++   +  R  + Y
Sbjct: 354 VDTIHYEVACLLNDRLPRVY 373


>gi|325690295|gb|EGD32299.1| alanine racemase [Streptococcus sanguinis SK115]
          Length = 369

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 148/374 (39%), Gaps = 35/374 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  +    V  F V++++E +
Sbjct: 14  IDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHI-EPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I  L         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILALGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   H    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEAEHHKFEAQLTRFHQILSE 191

Query: 189 YKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------HPMQTVVTAE 239
              +      ++S+  L          R G  +YG    +N S       +  +  ++  
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYG----LNPSGRVLELPYEFKPALSLV 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ +++  AG  V YG          I    +GYADG+   + G D            
Sbjct: 248 SELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFDV----------- 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             I G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT NY
Sbjct: 297 -LIDGQRCPIVGRVSMDQITVRLPQAYPL--GTSVVLIGNSGAETITATDVAEKRGTINY 353

Query: 356 DLLVRIGTRYAKFY 369
           +++  I  R  + Y
Sbjct: 354 EVVCLISDRVPRVY 367


>gi|152993699|ref|YP_001359420.1| alanine racemase [Sulfurovum sp. NBC37-1]
 gi|226711065|sp|A6QC54|ALR_SULNB RecName: Full=Alanine racemase
 gi|151425560|dbj|BAF73063.1| alanine racemase [Sulfurovum sp. NBC37-1]
          Length = 336

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 138/316 (43%), Gaps = 40/316 (12%)

Query: 17  KNNWHSMNALS----GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72
           +N +H++N ++       + A V+KDNAYG G + +A      G++   V S+EE   ++
Sbjct: 9   ENFYHNLNQIALKTGSVEKIAIVLKDNAYGHGLQLMASLSAEFGIRHAVVRSMEEAKNIK 68

Query: 73  LYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131
                 R  ++ G H  ++ I  F  N +  I +              +     L+VDTG
Sbjct: 69  ---ELFRTVLVLGDHAVKDDICSFALNCLNDIENAE------------LGARVELKVDTG 113

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE----RFRTLIS 187
            +R G++ +E L+       KK  +L  +++H   AD+  S +   Q +    + R   +
Sbjct: 114 MHRNGIAPEE-LERALQMIQKKDLELVGVMTHFRSADEMGSELFWQQKQFASVKERVKEA 172

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILI 245
            +  +     +S+  L    +   L R GI  YG  +   +    P++ V++  A+ I  
Sbjct: 173 GFMNVRFHSHNSAATLRSKTFDEDLVRVGIGAYGYNELPDVFDDIPLKPVLSLSAKKIAT 232

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+   GE V YGG      +  ++   +GY DG+       DS H          +I   
Sbjct: 233 RRLKKGERVGYGGDFTAPEEMTVSTYDLGYGDGWCRG----DSAHP---------YITAE 279

Query: 306 MVPILGKITMDMTMFD 321
            +PILG+++MD  + +
Sbjct: 280 GLPILGRVSMDFIILE 295


>gi|82750990|ref|YP_416731.1| alanine racemase [Staphylococcus aureus RF122]
 gi|82656521|emb|CAI80943.1| probable alanine racemase [Staphylococcus aureus RF122]
          Length = 361

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 147/338 (43%), Gaps = 43/338 (12%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQ 140
           ++       FD      +  ++P LT+Y    +        L+ +   +R G      ++
Sbjct: 79  VYE------FDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIK 132

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKGIE 193
           E L   H + N K+  +S + +H   AD+      +V+  ++  ++         +  I 
Sbjct: 133 EVLKDHHQNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIH 191

Query: 194 ASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKA 248
           A  ++S    G +L P  H    R GI+LYG      +N+ H +   +T +A +I +R+ 
Sbjct: 192 AQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQ-HDIVQSLTVKAHVIQVREV 248

Query: 249 LAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
            AG+   Y    ++T+D+  +AV  IGY DG   T +              +  I G   
Sbjct: 249 QAGDYCGYSFAFEVTKDNTKLAVVDIGYGDGILRTRA------------KHEALINGKRY 296

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
           PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 297 PI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 331


>gi|170780959|ref|YP_001709291.1| alanine racemase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155527|emb|CAQ00639.1| alanine racemase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 385

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 163/384 (42%), Gaps = 40/384 (10%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +IDL A+  N  ++ A +G     AVVK + YG G    A A    G     V  + E +
Sbjct: 18  RIDLGAISTNVRTLRAAAGAPLVMAVVKADGYGHGAVASARAALAGGADRLGVVDIREAL 77

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQV 128
            LR    +A I               +  +   ++S+ Q+   ++     G +    L+V
Sbjct: 78  ALRAAGIEAPILTWMHAPYADFATAIEAGIDLGLNSLRQVREAAEAARRVGRTAEVHLKV 137

Query: 129 DTGFNRLGLSLQEALD-FTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G++  E        +     G++ L  + SHLA A +     +  Q+  F   
Sbjct: 138 DTGLGRNGVTPAEWPGVVAEVAALVAEGRIHLGGVFSHLANAGEDE---DRAQVRAFHEA 194

Query: 186 ISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH----PMQT 234
           +   +  G+E     LA+++G L  P     + R GI +YG +  D +  +     P  T
Sbjct: 195 VDVVRAAGLEPGIRHLAATAGALRVPEARLDMVRLGIGIYGISPLDGVTSADLGLVPAMT 254

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +V +   ++ +++  A   VSYG   + T  + +A+ ++G+ADG P     L S  +P  
Sbjct: 255 LVGS---VVAVKRVPADTGVSYGYTYRTTSATTLALVSLGFADGVPR----LASNRAPVA 307

Query: 295 FLGGKGFIKGYMVPILGKITMDM----TMFDITDSLSIEVGDYIQIFGPDI----KLDDV 346
                  I G    + G+I MD         + D   + VGD   +FG        +++ 
Sbjct: 308 -------IHGARFRVSGRIAMDQFVVDVGDGVVDGRPVAVGDDAVLFGDPATGAPSVEEW 360

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A A+GT  Y+++ R+  R  + ++
Sbjct: 361 AEATGTIGYEIVARVAGRVTRRHS 384


>gi|294853874|ref|ZP_06794546.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
 gi|294819529|gb|EFG36529.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
          Length = 152

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 13/142 (9%)

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           H +  V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS     
Sbjct: 10  HSILPVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN---- 65

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVA 347
                   G  F     +PI+G+++MD    D+T     ++++G  +++ GP  +L+DVA
Sbjct: 66  -------KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVA 118

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y++L  +G RYA+ Y
Sbjct: 119 RDCDTIPYEILTALGNRYARVY 140


>gi|58039648|ref|YP_191612.1| alanine racemase, C-terminus [Gluconobacter oxydans 621H]
 gi|58002062|gb|AAW60956.1| Alanine racemase, C-terminus [Gluconobacter oxydans 621H]
          Length = 166

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 13/138 (9%)

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           VV  +A ++ IR+ L GE V YG   +  R   IA  A+GYADG+        S H    
Sbjct: 30  VVRLQAHVLQIREILPGEGVGYGLTYRPERVRRIATVAVGYADGF--------SRHGAGQ 81

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD--YIQIFGPDIKLDDVALASGT 352
              G  + +   +PILG+++MD  + DI+D    ++G    + + GP   +DDVA A+GT
Sbjct: 82  ---GCAWFEDIRLPILGRVSMDSLIVDISDVPEGKLGPDMMVDLIGPRRSVDDVAEAAGT 138

Query: 353 TNYDLLVRIGTRYAKFYT 370
             Y++L  +G R+ + Y 
Sbjct: 139 IGYEVLTSLGHRFHREYV 156


>gi|170024003|ref|YP_001720508.1| alanine racemase [Yersinia pseudotuberculosis YPIII]
 gi|169750537|gb|ACA68055.1| alanine racemase [Yersinia pseudotuberculosis YPIII]
          Length = 409

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 151/361 (41%), Gaps = 36/361 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I   AL  N   M  L  N  T  A++K +AYG     + P +    VQ   V S +E
Sbjct: 47  LEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASNQE 106

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
              +R   +T Q        +   Q+ + +D   LI   +   QL   +KL    +    
Sbjct: 107 LKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRIHL 166

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           AL    G +R GL + +A           L  L++  I+SH    D  +S + +  L RF
Sbjct: 167 ALN-SAGMSRNGLEVSKARGLNDAKTIVGLKNLTIVGIMSHYPVED--ASEIKA-DLARF 222

Query: 183 RTLIS--------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +              + I+  +A++   L  P+    + R G   YG T     S   + 
Sbjct: 223 QQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTIA---STEYKR 279

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S          
Sbjct: 280 VMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN--------- 330

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   I+G  +P+LGK +M+  M D+TD   + +GD + +FG     +I+ +++   S
Sbjct: 331 --AGHVIIQGQRLPVLGKTSMNTVMVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIEDLS 388

Query: 351 G 351
           G
Sbjct: 389 G 389


>gi|71425229|ref|XP_813053.1| alanine racemase [Trypanosoma cruzi strain CL Brener]
 gi|70877902|gb|EAN91202.1| alanine racemase, putative [Trypanosoma cruzi]
          Length = 388

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 170/412 (41%), Gaps = 82/412 (19%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67
           +++ L  +  N   +  ++G A    +VK NAYG G  +++  L+NA GV  F V S+ E
Sbjct: 7   VEVFLRNIAYNVECIRRIAGKAELIPMVKGNAYGHGMGRVSEYLHNACGVHKFGVASLGE 66

Query: 68  GVKLRLYTP------QARIFVLYGIHPGQEKI--------IFDTNLIPVISSVPQLTFYS 113
            ++L    P      Q  IFV        E           +   L P++ ++PQL  + 
Sbjct: 67  ALELIESQPSIAEKAQNEIFVFSDTEVLNEGCQSYYQPCGRWAVRLTPILGTLPQLKAFC 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
              +   S    L+++TG NRLGL    L+EA+        K+ G + L++ H   A   
Sbjct: 127 ASNAFNNSK-LCLKLETGMNRLGLRFDELEEAVPIL-----KQRGGVDLLLQHFGIAGS- 179

Query: 171 SSHVNSVQLERFRTLISHYK------------GIEA---SLASSSGILLGPNYHFQLTRP 215
                   +ER    ++HY+            G+E    S+++S  +           RP
Sbjct: 180 --------VERLAETLNHYEAFKKAKKFLHDSGVEVRATSVSNSGAVEQRIGLEETYIRP 231

Query: 216 GISLYGGTDKINKSHPMQTVVTAEARIIL----IRKALAGELVSYGGQKKLTRDSLIAVA 271
           GI LYG     +K+       +     +L    +RK   GE V Y     +  DS+I + 
Sbjct: 232 GIMLYGPRSVTSKNLWNGKFASCFYTKVLHHFPLRK---GEGVGY-DLTPVKADSVIVML 287

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL----GKITMDMTMFDI-TDSL 326
            IGYADG+  T  G+    +P          +    PI+    G+I MDM    +  + +
Sbjct: 288 PIGYADGFLCTYKGMPINVTP----------EDAAEPIIGTVHGRINMDMAAVVVYPEEV 337

Query: 327 SIEVGD---------YIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              +G+          I+++G DI  ++ A++ G   + L   +  R  + Y
Sbjct: 338 GKNIGNIMAAVKKESRIRVWGDDI--EEKAVSVGAIPHQLTCGLSIRVPRIY 387


>gi|260102331|ref|ZP_05752568.1| alanine racemase [Lactobacillus helveticus DSM 20075]
 gi|260083864|gb|EEW67984.1| alanine racemase [Lactobacillus helveticus DSM 20075]
          Length = 376

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 133/331 (40%), Gaps = 26/331 (7%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A++ N  + M  L  N +  AVVK N YG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR       I VL  + P    I    N+   + ++  L    K L    +     L
Sbjct: 71  ALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDAEKYLAKENLQLKIHL 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +D+G  R+G +  +      N F  N     +  + +H A AD         Q E+F+ 
Sbjct: 131 GIDSGMGRIGFNEDDEF-VAANKFLENNDNFFIEGMFAHFASADSDDETYFKHQCEKFKH 189

Query: 185 LIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-------MQTV 235
           + S    K     + +++  +        L R GI +YG     N S P       ++  
Sbjct: 190 MKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIELEPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  E+ +  ++    G+ V YG       D++I    +GYADG+     G        V 
Sbjct: 250 LLFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------KVK 303

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
           +G +        PI+G+I MD  M  +   +
Sbjct: 304 VGDE------YCPIVGRICMDQFMVKMPKKM 328


>gi|125717409|ref|YP_001034542.1| alanine racemase [Streptococcus sanguinis SK36]
 gi|125497326|gb|ABN43992.1| Alanine racemase, putative [Streptococcus sanguinis SK36]
          Length = 369

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 152/371 (40%), Gaps = 29/371 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+  N   ++A L       AVVK NAYG G  +++  + +  V  F V++++E +
Sbjct: 14  IDLAAIAFNIRQLSAHLPQKTEKWAVVKANAYGHGAIEVSKHI-DPLVDGFCVSNIDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +LR      +I VL         +     +   ++S+  L              + +++D
Sbjct: 73  ELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGLNFHIKID 132

Query: 130 TGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G  R+G    QEA +  H            I +H A AD+   +    QL RF  ++S 
Sbjct: 133 SGMGRIGFRDSQEAQEAIHR-LQAAGAVAEGIFTHFATADEVDHYKFEAQLARFHQILSE 191

Query: 189 YKGIEASL--ASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242
              +   +  ++S+  L          R G  +YG    GT  +   +  +  ++  + +
Sbjct: 192 LDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGT-VLELPYEFKPALSLVSEL 250

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + +++  AG  V YG          I    +GYADG+   + G D              I
Sbjct: 251 VHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFDV------------LI 298

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358
            G   PI+G+++MD     +  +  +  G  + + G      I + DVA   GT NY+++
Sbjct: 299 DGQRCPIVGRVSMDQITVRLPQAYPL--GTPVVLIGNSGAETITVTDVAEKLGTINYEVV 356

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 357 CLISDRVPRVY 367


>gi|257877141|ref|ZP_05656794.1| alanine racemase [Enterococcus casseliflavus EC20]
 gi|257811307|gb|EEV40127.1| alanine racemase [Enterococcus casseliflavus EC20]
          Length = 373

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 156/378 (41%), Gaps = 38/378 (10%)

Query: 11  IDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID TA+  N  H +  L       AVVK N YG G  + A A    G   F V +++E +
Sbjct: 13  IDTTAITENIKHEIAHLPSETFLFAVVKANGYGHGAVQTALAAKEGGADGFCVATIDEAI 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA--L 126
           +LR       I +L  ++     ++   +L  PV S    +   + L    ++ P    +
Sbjct: 73  ELREAGITDPILILGVVNVCDIALLTTYDLSFPVASMDWLIEAGAYLEENPLNKPLKVHI 132

Query: 127 QVDTGFNRLG-LSLQEALDFT-----HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +VDTG  R+G L+++E          H SF     +   I +H + AD   +     Q +
Sbjct: 133 KVDTGMGRIGFLTVEEVRQAVLWLEDHPSF-----EWEGIFTHFSTADQADTSYWETQHQ 187

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTV 235
           RF+ +++   Y        +S+  L        + R GI++YG       +++   ++  
Sbjct: 188 RFKEVLTVLPYLPTYIHTGNSATSLWHKEAVGNMVRFGIAMYGLNPSGHALSEPFSLKPA 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + +I ++    G  + YG      R   I    IGYADG+   + G          
Sbjct: 248 LSLVSELIQVKLLEKGAGIGYGETYITPRQEWIGTVPIGYADGWLRKMQGFSI------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 ++G    I+G++ MD  M  +  + +  VG  + + G +    I + DVA    
Sbjct: 301 -----LVEGERCEIVGRVCMDQLMIRLPRAFA--VGTPVTLIGENHGEQITMQDVADQLE 353

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++   +  R  + Y
Sbjct: 354 TIHYEVACTLSARVPREY 371


>gi|297618459|ref|YP_003703618.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680]
 gi|297146296|gb|ADI03053.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680]
          Length = 400

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 150/372 (40%), Gaps = 51/372 (13%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M +N ++  ++D+ AL +N  ++ +L   N R  AV+K NAYGLG    A  L   GV  
Sbjct: 4   MPNNRWI--EVDIDALVHNLEAVRSLLKENTRLIAVLKANAYGLGAVGTARVLARHGVDY 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLM 116
           F VT  EE  +LR       I V     P  E+ I    +  L   ++S       S+  
Sbjct: 62  FAVTFPEEAFELREGGISTDILVF---APAGEREIEKAVEQGLTLTVASYRDYRLASEAA 118

Query: 117 S-CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           S         L++DTG  R G++   AL+        +   L  + +H A A   S    
Sbjct: 119 SRFNKKVRIHLKIDTGLGRFGVTADRALELARLIHYDQWLVLEGLYTHFAEAGARSPKFT 178

Query: 176 SVQLERFRTLISHY--KGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGT------- 223
             Q E+ +  +      GI  +L    +S+  L  P  H    R G +L GG        
Sbjct: 179 QSQFEQLQKTVDALTSNGIRPALIHCCNSAAALRFPEMHLDAVRIG-TLLGGQHPAGHVP 237

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           +KI   +P +     +AR+  +R+  AG  + Y    +    S IAV  +G+ADG     
Sbjct: 238 NKIKLKNPYRF----KARVTAVREMPAGSYLGYYRTYRTRAASKIAVVPVGFADGL---- 289

Query: 284 SGLDSEHSP----SVFLGGKGFIKGYM---------------VPILGKITMDMTMFDITD 324
            GL++   P     +F      +  Y+                P+ GK+ M   + ++  
Sbjct: 290 -GLEALSRPGSWFDLFKIIAKLVGSYLNLSRFTVKVKIGKDEYPVRGKVFMQFCLVELPP 348

Query: 325 SLSIEVGDYIQI 336
              +E G  +++
Sbjct: 349 DFPVEPGTVVEV 360


>gi|73662660|ref|YP_301441.1| alanine racemase 2 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495175|dbj|BAE18496.1| alanine racemase 2 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 357

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 125/266 (46%), Gaps = 34/266 (12%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK+NAY  G E       + G+  F  TS++E +++R   P A IF++  ++      
Sbjct: 27  AVVKNNAYHYGLEFAVEQFLDIGINTFSTTSLKEAIRIRKLAPNATIFLMNAVYE----- 81

Query: 94  IFD---TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQEALDFT 146
            FD    N I +  ++P L+FY + ++        L+ +   +R GL     ++E +   
Sbjct: 82  -FDKIRENQIQM--TLPSLSFYYENINDLYDIQVHLEYENLLHRSGLKTLDEIKEVIHHH 138

Query: 147 HNSFNKKLGQLSLIISHLACADD---PSSHVN-SVQLERFRTLISHYKGIE-------AS 195
           + + N+    +S + +H   AD+   P  ++  +  LE   TL+      E       AS
Sbjct: 139 NQNKNEHKMHISGLWTHFGYADEFDVPDYNIERAAWLEIVDTLLDEGYEFEMIHAQNSAS 198

Query: 196 LASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGEL 253
                G+L  PN+     R GI+LYG      IN+S  +Q  +T +  +I +R+  AGE 
Sbjct: 199 YYREQGVL--PNH--THARIGIALYGSRPYSTINES-DIQQSLTVKGNVIQVREVNAGEF 253

Query: 254 VSYGGQKKLTRDSL-IAVAAIGYADG 278
             Y    + T+++  +AV  +GY DG
Sbjct: 254 CGYSFAFEATKNNTKLAVVDVGYGDG 279


>gi|323444052|gb|EGB01663.1| alanine racemase [Staphylococcus aureus O46]
          Length = 363

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 148/339 (43%), Gaps = 43/339 (12%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQ 140
           ++       FD  L   I  ++P LT+Y    +        L+ +   +R G      ++
Sbjct: 79  VYE------FDLVLEHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIK 132

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKGIE 193
           E L   H + N K+  +S + +H   AD+      +++  ++  ++         +  I 
Sbjct: 133 EVLKDHHQNQNAKMI-ISGLWTHFGYADEFDVSDYNIERSQWMEIVEALLTEGYQFDLIH 191

Query: 194 ASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINK-SHPMQTVVTAEARIILIRK 247
           A  ++S    G +L P  H    R GI+LYG      +N+  H +   +T +A +I +R+
Sbjct: 192 AQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHQHDIVQSLTVKAHVIQVRE 249

Query: 248 ALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
             AG+   Y    ++T+++  +AV  IGY DG   T +              +  I G  
Sbjct: 250 VQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGKR 297

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
            PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 298 YPI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 333


>gi|322390146|ref|ZP_08063680.1| alanine racemase [Streptococcus parasanguinis ATCC 903]
 gi|321143177|gb|EFX38621.1| alanine racemase [Streptococcus parasanguinis ATCC 903]
          Length = 370

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 164/382 (42%), Gaps = 47/382 (12%)

Query: 10  KIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGC----EKIAPALYNAGVQDFFVTS 64
           ++DL A+  N   + + +   A   AVVK NAYG G     +K+AP      V  F V++
Sbjct: 12  RVDLDAIAFNVQQVSDHIPSQALKYAVVKANAYGHGVVAVTKKLAPQ-----VDGFCVSN 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-- 122
           ++E +++R    Q  I +L G+ P +   +   + I +  +V  L +  +L+        
Sbjct: 67  MDEALEIREEGLQHPILIL-GVVPSETVNLAKEHDIRL--TVASLAWLDQLLGQEADLSG 123

Query: 123 -PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++VD+G  R+G    E +            ++  I +H A AD+        Q + 
Sbjct: 124 LKVHIKVDSGMGRIGFRRIEEIKEAERLLLAAGAEIEGIFTHFATADEADDRKFQAQYQF 183

Query: 182 FRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------HPM 232
           F+ +++  + +   +  ++S+  L   +  F   R G  +YG    +N S       + +
Sbjct: 184 FKEVLAALETLPPIVHASNSATSLWHADTIFTAVRLGDVMYG----LNPSGSVLALPYEI 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  + ++ +++  AG+ + YG          I    IGYADG+   +         
Sbjct: 240 KPALSLVSELVHVKQLEAGQDIGYGATYTTEDAQWIGTIPIGYADGWIREMQNF------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  IK    PI+G+++MD     + + L +  G  + + G D    I   ++A 
Sbjct: 294 ------QVLIKSEFCPIVGRVSMDQITVRLPEELPL--GTKVTLIGRDGEKEITATEIAD 345

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
             GT NY+++  +  R  + YT
Sbjct: 346 YRGTINYEVVCLLSDRIPRDYT 367


>gi|268589404|ref|ZP_06123625.1| alanine racemase [Providencia rettgeri DSM 1131]
 gi|291315242|gb|EFE55695.1| alanine racemase [Providencia rettgeri DSM 1131]
          Length = 409

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 133/325 (40%), Gaps = 25/325 (7%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83
           N L   +   AV+K +AYG     + P +    VQ   VT+ +E   +R    + R+  +
Sbjct: 63  NLLGDKSSLCAVLKGDAYGHDLSLVTPIMIENNVQCIGVTNNQELKTVRDLGFKGRLMRV 122

Query: 84  YGIHPGQ--EKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ 140
                 +  +   ++T  LI  ++   +L   +K  +  +    AL    G +R GL + 
Sbjct: 123 RSATEQEMAQATQYETEELIGNLAMAQRLNAIAKKQNKVIPIHLALN-SAGMSRNGLDVS 181

Query: 141 EALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTLISHYKGIEAS--- 195
            A          +L QL +  I+SH    D+     +  + ++    + +  G++     
Sbjct: 182 SASGLDEAKQIAELSQLKIVGIMSHYPEEDEAQIRKDLAKFKKESQQVLNVTGLKREDIT 241

Query: 196 --LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGEL 253
             +A++   +  P     + R G   YG T   N     + V+T ++ I  +     G  
Sbjct: 242 LHVANTYATITVPESWLDMVRVGGIFYGDTVATND---YKRVMTLKSNIASVNHYPKGNT 298

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           V Y     L RDS++A   +GYADGY    S             G   I G  VP+LGK 
Sbjct: 299 VGYDRTYTLKRDSVLANIPVGYADGYRRVFSN-----------AGHALINGQTVPVLGKT 347

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFG 338
           +M+  M D+TD   +  GD +  FG
Sbjct: 348 SMNTVMVDVTDLKYVSPGDEVVFFG 372


>gi|116490276|ref|YP_809820.1| alanine racemase [Oenococcus oeni PSU-1]
 gi|290889662|ref|ZP_06552751.1| hypothetical protein AWRIB429_0141 [Oenococcus oeni AWRIB429]
 gi|116091001|gb|ABJ56155.1| alanine racemase [Oenococcus oeni PSU-1]
 gi|290480659|gb|EFD89294.1| hypothetical protein AWRIB429_0141 [Oenococcus oeni AWRIB429]
          Length = 371

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 124/291 (42%), Gaps = 30/291 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++   ++L  N      +SG       VK NAYG G  +++      GV    V+ ++E
Sbjct: 10  RIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ +R       I +L  I      I    + +  +SS+  L    K++         L 
Sbjct: 70  GIAIRQAGIDDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADKILG-KEKLSVNLA 128

Query: 128 VDTGFNRLGL----SLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           VDTG NR+G+     L++ ++F      H S++        I +H A +D+P  H    Q
Sbjct: 129 VDTGMNRIGVRSKKDLKDEIEFLQEHSDHFSYDG-------IFTHFASSDNPDDHYFQRQ 181

Query: 179 LERFRTLIS-----HYKGIEASLAS--SSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
             R+  LI       Y  +  S A+   S  L G N    + R G  +YG         P
Sbjct: 182 KNRWYELIDGLIMPRYVHVMNSGAAMYHSKELPGCN---SIARVGTVVYGVEPSEGVLGP 238

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
              ++ V   ++ +  ++K  AGE +SYG +   +RD+ I    IGY DG+
Sbjct: 239 IDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGW 289


>gi|257867063|ref|ZP_05646716.1| alanine racemase [Enterococcus casseliflavus EC30]
 gi|257873398|ref|ZP_05653051.1| alanine racemase [Enterococcus casseliflavus EC10]
 gi|257801119|gb|EEV30049.1| alanine racemase [Enterococcus casseliflavus EC30]
 gi|257807562|gb|EEV36384.1| alanine racemase [Enterococcus casseliflavus EC10]
          Length = 373

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 156/378 (41%), Gaps = 38/378 (10%)

Query: 11  IDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID TA+  N  H +  L       AVVK N YG G  + A A    G   F V +++E +
Sbjct: 13  IDTTAITENIKHEIAHLPSETFLFAVVKANGYGHGAVQTALAAKEGGADGFCVATIDEAI 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA--L 126
           +LR       I +L  ++     ++   +L  PV S    +   + L    ++ P    +
Sbjct: 73  ELREAGITDPILILGVVNVCDITLLTTYDLSFPVASMDWLIEAGAYLEENPLNKPLKVHI 132

Query: 127 QVDTGFNRLG-LSLQEALDFT-----HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +VDTG  R+G L+++E          H SF     +   I +H + AD   +     Q +
Sbjct: 133 KVDTGMGRIGFLTVEEVRQAILWLEDHPSF-----EWEGIFTHFSTADQADTSYWETQHQ 187

Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTV 235
           RF+ +++   Y        +S+  L        + R GI++YG       +++   ++  
Sbjct: 188 RFKEVLTVLPYLPTYIHTGNSATSLWHKEAVGNMVRFGIAMYGLNPSGHALSEPFSLKPA 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + +I ++    G  + YG      R   I    IGYADG+   + G          
Sbjct: 248 LSLVSELIQVKLLEKGAGIGYGETYITPRQEWIGTVPIGYADGWLRKMQGFSI------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 ++G    I+G++ MD  M  +  + +  VG  + + G +    I + DVA    
Sbjct: 301 -----LVEGERCEIVGRVCMDQLMIRLPRAFA--VGTPVTLIGENHGEQITMQDVADQLE 353

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++   +  R  + Y
Sbjct: 354 TIHYEVACTLSARIPREY 371


>gi|313839518|gb|EFS77232.1| alanine racemase [Propionibacterium acnes HL086PA1]
 gi|315079051|gb|EFT51058.1| alanine racemase [Propionibacterium acnes HL053PA2]
 gi|327334461|gb|EGE76172.1| alanine racemase [Propionibacterium acnes HL097PA1]
          Length = 352

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 145/360 (40%), Gaps = 24/360 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-VTSVEEGVKLRLYTPQARIF 81
           M   +G+ +    VK +AYG G  +++  +      D+  V +V EG +L        I 
Sbjct: 1   MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGITLPIL 60

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ 140
            L    P        + +   +     L   SK  +  G++    + VD+G  R+GL  +
Sbjct: 61  KLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHIAVDSGMGRIGLRPE 120

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLISHYKGIEASLA-- 197
                T  +   +  ++  + +HL  +D P        +++ F T ++  +         
Sbjct: 121 HLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEEFTRHEIDAFMTAVTQTQTDRGPFPLV 180

Query: 198 --SSSGILLGPNY-HFQLTRPGISLYG-GTDKINKSHPMQTVVTAEARIILIRKALAGEL 253
             ++SG +LG +     + R GI  YG   D       +   ++  + +  ++    G+ 
Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWISHVTFVKTINPGDA 240

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           + YG     +  + IA   +GYADG    LS             G   I G + PI+G+I
Sbjct: 241 IGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGHVLIGGSVHPIVGRI 289

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            MD  M D+    S+ VGD + + G      +  DD+A   GT +Y++   I  R  + +
Sbjct: 290 CMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISYEITCAISKRVDRRW 349


>gi|118587123|ref|ZP_01544552.1| alanine racemase [Oenococcus oeni ATCC BAA-1163]
 gi|118432402|gb|EAV39139.1| alanine racemase [Oenococcus oeni ATCC BAA-1163]
          Length = 371

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 124/291 (42%), Gaps = 30/291 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++   ++L  N      +SG       VK NAYG G  +++      GV    V+ ++E
Sbjct: 10  RIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ +R       I +L  I      I    + +  +SS+  L    K++         L 
Sbjct: 70  GIAIRQAGINDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADKILG-KEKLSVNLA 128

Query: 128 VDTGFNRLGL----SLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           VDTG NR+G+     L++ ++F      H S++        I +H A +D+P  H    Q
Sbjct: 129 VDTGMNRIGVRSKKDLKDEIEFLQEHSDHFSYDG-------IFTHFASSDNPDDHYFQRQ 181

Query: 179 LERFRTLIS-----HYKGIEASLAS--SSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
             R+  LI       Y  +  S A+   S  L G N    + R G  +YG         P
Sbjct: 182 KNRWYELIDGLIMPRYVHVMNSGAAMYHSKELPGCN---SIARVGTVVYGVEPSEGVLGP 238

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
              ++ V   ++ +  ++K  AGE +SYG +   +RD+ I    IGY DG+
Sbjct: 239 IDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGW 289


>gi|296272673|ref|YP_003655304.1| alanine racemase [Arcobacter nitrofigilis DSM 7299]
 gi|296096847|gb|ADG92797.1| alanine racemase [Arcobacter nitrofigilis DSM 7299]
          Length = 340

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 141/332 (42%), Gaps = 58/332 (17%)

Query: 17  KNNWHSMNALSGNA----RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72
           +N  H+++ +S  A    + A V+KDNAYG G  +I+      G++   V +++E +K+ 
Sbjct: 9   RNYIHNLDIISKQAGSKEKIAVVLKDNAYGHGIIEISKIAKEFGIKKAVVKNLKEALKIE 68

Query: 73  LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGF 132
            +     I      H          N I  I  +P+ T               L+VDTG 
Sbjct: 69  DFFEDIIILSEINFHTYSHTFHIVINSIEQIHKIPKNT------------NVHLKVDTGM 116

Query: 133 NRLGLS---LQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +R G+S   L+EA+D     + N     L+ I++H   AD  +S     Q   FR +   
Sbjct: 117 HRNGISKNQLKEAIDGICRQNLN-----LTGIMTHHRGADGLNSEF-FWQKRNFRLVKEE 170

Query: 189 YKGIEASL---------ASSSGILLGPNYHFQLTRPGISLYG------GTDKINKSHPMQ 233
            K I   L          +S+ +    N+     R GI+ YG        DKI+    ++
Sbjct: 171 VKRICEQLFLPLPKFHSCNSAALFRTANFDDDFARVGIASYGYFENHPSFDKID----LK 226

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++  A+ +  R     + V YGG  K  ++ +++   IGY DG+ L ++   S  +P 
Sbjct: 227 PVLSLWAQKVTTRVLKKNQSVGYGGTYKTDKNIIVSTYDIGYGDGF-LRINENQSYKTP- 284

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
                    KGY V  LG+I+MD    D  D 
Sbjct: 285 ---------KGYKV--LGRISMDNLSLDSQDE 305


>gi|49483589|ref|YP_040813.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425463|ref|ZP_05601888.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428123|ref|ZP_05604521.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430754|ref|ZP_05607136.1| alanine racemase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433514|ref|ZP_05609872.1| alanine racemase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436355|ref|ZP_05612402.1| alanine racemase [Staphylococcus aureus subsp. aureus M876]
 gi|282903979|ref|ZP_06311867.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C160]
 gi|282905744|ref|ZP_06313599.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908715|ref|ZP_06316533.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910979|ref|ZP_06318781.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914187|ref|ZP_06321974.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M899]
 gi|282919109|ref|ZP_06326844.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C427]
 gi|282924292|ref|ZP_06331966.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C101]
 gi|283958161|ref|ZP_06375612.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293501214|ref|ZP_06667065.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510175|ref|ZP_06668883.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M809]
 gi|293526767|ref|ZP_06671452.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M1015]
 gi|295427912|ref|ZP_06820544.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591127|ref|ZP_06949765.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8]
 gi|49241718|emb|CAG40408.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271920|gb|EEV04058.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274964|gb|EEV06451.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278882|gb|EEV09501.1| alanine racemase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281607|gb|EEV11744.1| alanine racemase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284637|gb|EEV14757.1| alanine racemase [Staphylococcus aureus subsp. aureus M876]
 gi|282313679|gb|EFB44072.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C101]
 gi|282316919|gb|EFB47293.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C427]
 gi|282322255|gb|EFB52579.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M899]
 gi|282324674|gb|EFB54984.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326979|gb|EFB57274.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331036|gb|EFB60550.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595597|gb|EFC00561.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C160]
 gi|283790310|gb|EFC29127.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920839|gb|EFD97902.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M1015]
 gi|291096219|gb|EFE26480.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467119|gb|EFF09637.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M809]
 gi|295128270|gb|EFG57904.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576013|gb|EFH94729.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8]
 gi|312438201|gb|ADQ77272.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195291|gb|EFU25678.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 361

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 151/340 (44%), Gaps = 47/340 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
                   +++ +L+    +  ++P LT+Y    +        L+ +   +R G      
Sbjct: 77  ------NAVYEFDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKG 191
           ++E L   H++ N K+  +S + +H   AD+      +V+  ++  ++         +  
Sbjct: 131 IKEVLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDL 189

Query: 192 IEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIR 246
           I A  ++S    G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R
Sbjct: 190 IHAQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHEIVQS-LTVKAHVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +  AG+   Y    ++T+++  +AV  IGY DG   T +              +  I G 
Sbjct: 247 EVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
             PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 295 RYPI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 331


>gi|108807830|ref|YP_651746.1| alanine racemase [Yersinia pestis Antiqua]
 gi|167401740|ref|ZP_02307231.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|108779743|gb|ABG13801.1| putative alanine racemase [Yersinia pestis Antiqua]
 gi|167048845|gb|EDR60253.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 409

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 151/361 (41%), Gaps = 36/361 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I   AL  N   M  L  N  T  A++K +AYG     + P +    VQ   V S +E
Sbjct: 47  LEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASNQE 106

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
              +R   +T Q        +   Q+ + +D   LI   +   QL   +KL    +    
Sbjct: 107 LKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRIHL 166

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           AL    G +R GL + +A           L  L++  I+SH    D  +S + +  L RF
Sbjct: 167 ALN-SAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPVED--ASEIKA-DLARF 222

Query: 183 RTLIS--------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +              + I+  +A++   L  P+    + R G   YG T     S   + 
Sbjct: 223 QQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTIA---STEYKR 279

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S          
Sbjct: 280 VMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN--------- 330

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   I+G  +P+LGK +M+  + D+TD   + +GD + +FG     +I+ +++   S
Sbjct: 331 --AGHVIIQGQRLPVLGKTSMNTVIVDVTDMKKVSLGDEVVLFGKQGNAEIQAEEIEDLS 388

Query: 351 G 351
           G
Sbjct: 389 G 389


>gi|314936455|ref|ZP_07843802.1| alanine racemase family protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655074|gb|EFS18819.1| alanine racemase family protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 357

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 45/339 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY  G E        AG+  F  TS++E V++R   P A IF++  
Sbjct: 19  VKNNQSIMAVVKNNAYHYGLEFAVRTFLEAGIHTFSTTSLKEAVRVRKLAPHATIFLMNA 78

Query: 86  IHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQE 141
           ++       FDT   N I +  ++P L +Y +  S        L+ +   +R G  +L E
Sbjct: 79  VYD------FDTVRNNNIQM--TLPSLEYYYQYKSELKDINVHLEFENLLHRSGFKNLDE 130

Query: 142 ALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLIS-------HYKGI 192
             +  H+  N    +++++   +H   AD+       ++ E +  +++        ++ I
Sbjct: 131 IKEVLHHHENDNGSKMNIVGLWTHFGYADEFDVPEYGIEREAWLNVVNTLLNEGYQFELI 190

Query: 193 EASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRK 247
            A  ++S    G  L P YH    R GI+LYG     K+++ H ++  +T +  +I +R+
Sbjct: 191 HAQNSASYYREGQQLLP-YHTH-ARVGIALYGSRPYSKLDE-HEIEQALTVKGNVIQVRE 247

Query: 248 ALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              G+   Y    +   D + +AV  IGY DG       L    +    + GK +     
Sbjct: 248 VNKGDYCGYSFAFEAMHDHTHLAVVDIGYGDGI------LKKRATHEALINGKRY----- 296

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
            PI   + M     ++ D   +   D + ++  DI++D+
Sbjct: 297 -PIRA-LMMSHMFVEVDD--DVHAQDEVILYNNDIRIDE 331


>gi|303242258|ref|ZP_07328745.1| Alanine racemase [Acetivibrio cellulolyticus CD2]
 gi|302590168|gb|EFL59929.1| Alanine racemase [Acetivibrio cellulolyticus CD2]
          Length = 132

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 16/122 (13%)

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SYG   K  R+S IA   IGYADGY   L+             G+  + G  VPI+GK
Sbjct: 8   CISYGRIFKTQRESRIATLPIGYADGYTRLLTN-----------KGRVLVNGQSVPIVGK 56

Query: 313 ITMDMTMFDITDSL-SIEVGDYIQIF----GPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           I MD  M D+TD    + VGD + +F    G +I ++D+A   GT NY++   IG R  +
Sbjct: 57  ICMDQCMIDVTDVQGEVNVGDEVVLFGSQNGSEISIEDLASKIGTINYEIACIIGKRIPR 116

Query: 368 FY 369
            Y
Sbjct: 117 VY 118


>gi|302333011|gb|ADL23204.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 361

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 150/343 (43%), Gaps = 51/343 (14%)

Query: 25  ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLY 84
           A+  N    AVVK+NAY    E       +AG+  F  TS+ E +K+R   P A IF++ 
Sbjct: 18  AVKNNQPIMAVVKNNAYHYDLEFAVSQFIHAGIDTFSTTSLREAIKVRQLAPDATIFLM- 76

Query: 85  GIHPGQEKIIFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL---- 137
                    +++ +L+    +  ++P LT+Y    +        L+ +   +R G     
Sbjct: 77  -------NAVYEFDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLN 129

Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQ-LERFRTLISHYKGIE 193
            ++E L   H + N K+  +S + +H   AD+   P  +V   Q +E   TL+  ++G +
Sbjct: 130 EIKEVLKDHHQNQNAKMI-ISGLWTHFGYADEFDVPDYNVERSQWMEIVETLL--FEGYQ 186

Query: 194 ASLASS--------SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARII 243
             L  +         G  L P  H    R GI+LYG      +N+ H +   +T +A +I
Sbjct: 187 FDLIHAQNSASFYREGQELLP--HHTHARVGIALYGSRPYSSLNQ-HDIVQSLTVKANVI 243

Query: 244 LIRKALAGELVSYGGQKKLTR-DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
            + +  AG+   Y    ++T+ ++ +AV  IGY DG   T +              +  I
Sbjct: 244 QVHEVQAGDYCGYSFAFEVTKTNTKLAVVDIGYGDGILRTRA------------KHEALI 291

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
            G   PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 292 NGKRYPI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 331


>gi|146319466|ref|YP_001199178.1| alanine racemase [Streptococcus suis 05ZYH33]
 gi|146321663|ref|YP_001201374.1| alanine racemase [Streptococcus suis 98HAH33]
 gi|253752482|ref|YP_003025623.1| alanine racemase [Streptococcus suis SC84]
 gi|253754308|ref|YP_003027449.1| alanine racemase [Streptococcus suis P1/7]
 gi|253756242|ref|YP_003029382.1| alanine racemase [Streptococcus suis BM407]
 gi|166969434|sp|A4W3N5|ALR_STRS2 RecName: Full=Alanine racemase
 gi|166969435|sp|A4VXD9|ALR_STRSY RecName: Full=Alanine racemase
 gi|145690272|gb|ABP90778.1| Alanine racemase [Streptococcus suis 05ZYH33]
 gi|145692469|gb|ABP92974.1| Alanine racemase [Streptococcus suis 98HAH33]
 gi|251816771|emb|CAZ52414.1| alanine racemase [Streptococcus suis SC84]
 gi|251818706|emb|CAZ56542.1| alanine racemase [Streptococcus suis BM407]
 gi|251820554|emb|CAR47310.1| alanine racemase [Streptococcus suis P1/7]
 gi|319758890|gb|ADV70832.1| alanine racemase [Streptococcus suis JS14]
          Length = 367

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 164/376 (43%), Gaps = 33/376 (8%)

Query: 8   RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++++L A+  N+   M  L       AVVK NAYG G   +A  L ++    F V++++
Sbjct: 10  QIRVNLDAIAENFEQVMTNLPPKTEAFAVVKANAYGHGAVAVAKKL-SSQAAGFCVSNLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR    +  I +L G+ P +   +    N+   ++S+  L     L +        
Sbjct: 69  EALELRKAGIEHPILIL-GVVPVRFLPVAHQLNISVTVASLDWLQDAKDLEADLSGLTVH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184
           L++DTG  R+G      L        +    +  + +H A AD+   +H  S QL  F+ 
Sbjct: 128 LKLDTGMGRIGFRKIADLLQAIAILEELEYDIEGVYTHFATADEVEQAHFES-QLSVFKE 186

Query: 185 LISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
            +       + I AS +++S  +   +  F L R G  LYG       +     +Q  ++
Sbjct: 187 FLDVLPITPRWIHASNSATS--IWHADTVFNLVRLGNILYGLNPSGRVLELPFGVQPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I+ +++  AG  + YG     T    IA   IGYADG   +L GL      SV + 
Sbjct: 245 LVSEIVHVKQVEAGTTIGYGATYHSTDSEWIATVPIGYADGLVRSLQGL------SVLVD 298

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G+         I+G+I+MD     +  +  +  G  + + G D    I + + A   GT 
Sbjct: 299 GQA------CEIVGRISMDQITIRLPRAYPL--GQKVTLIGQDGDKTISVQEWADRIGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + +
Sbjct: 351 NYEVVCLLTDRLPRIF 366


>gi|293380353|ref|ZP_06626424.1| alanine racemase [Lactobacillus crispatus 214-1]
 gi|290923036|gb|EFD99967.1| alanine racemase [Lactobacillus crispatus 214-1]
          Length = 376

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 30/335 (8%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A++ N  + M  L+   +  AVVK NAYG G  ++A      G     V  ++E
Sbjct: 11  VKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGAAGLCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR       I VL  + P    I    N+   I ++  L    K L    +     +
Sbjct: 71  ALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLEKEQLQLKVHI 130

Query: 127 QVDTGFNRLGLSLQEALDF-THNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182
            VD+G  R+G +  E  DF   N F  N     +  + +H A AD         Q+E+F 
Sbjct: 131 GVDSGMGRIGFNEDE--DFIAANKFLQNNDNFYVEGMFAHFASADSADDTYFKHQVEKFA 188

Query: 183 --RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-------MQ 233
             R+L++  K     + +++  +   +      R GI +YG     N   P       ++
Sbjct: 189 HMRSLLT-VKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDLKSSISLE 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G        
Sbjct: 248 PALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF------K 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
           V LG +        PI+G+I MD  M  +   + +
Sbjct: 302 VKLGDE------YCPIVGRICMDQFMVKMPKKMPL 330


>gi|178847612|pdb|3CO8|A Chain A, Crystal Structure Of Alanine Racemase From Oenococcus Oeni
 gi|178847613|pdb|3CO8|B Chain B, Crystal Structure Of Alanine Racemase From Oenococcus Oeni
          Length = 380

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 119/284 (41%), Gaps = 16/284 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++   ++L  N      +SG       VK NAYG G  +++      GV    V+ ++E
Sbjct: 11  RIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ +R       I +L  I      I    + +  +SS+  L    K++         L 
Sbjct: 71  GIAIRQAGIDDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADKILG-KEKLSVNLA 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTL 185
           VDTG NR+G+  ++ L        +     S   I +H A +D+P  H    Q  R+  L
Sbjct: 130 VDTGXNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYEL 189

Query: 186 IS-----HYKGIEASLASS--SGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQTV 235
           I       Y  +  S A+   S  L G N    + R G  +YG         P   ++ V
Sbjct: 190 IDGLIXPRYVHVXNSGAAXYHSKELPGCN---SIARVGTVVYGVEPSEGVLGPIDKLKPV 246

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
              ++ +  ++K  AGE +SYG +   +RD+ I    IGY DG+
Sbjct: 247 FELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGW 290


>gi|71423858|ref|XP_812596.1| alanine racemase 2 [Trypanosoma cruzi strain CL Brener]
 gi|70877396|gb|EAN90745.1| alanine racemase 2, putative [Trypanosoma cruzi]
          Length = 388

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 169/408 (41%), Gaps = 74/408 (18%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           +++ L  +  N   +  ++G A    +VK NAYG G  K++  L+N  GV  F V S+ E
Sbjct: 7   VEVCLRNIAYNVECIRRIAGKAELIPMVKGNAYGHGMGKVSEYLHNVCGVHTFGVASLGE 66

Query: 68  GVKLRLYTP------QARIFVLYGIHPGQEKII--------FDTNLIPVISSVPQLTFYS 113
            ++L    P      Q  IFV        E           +   L P++ ++PQL  + 
Sbjct: 67  ALELIESQPSIAEKAQNEIFVFSDTEVLNEGCQSYYQPCGRWAVRLTPILGTLPQLKAFC 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
              +   +    L+++TG NRLGL    L+EA+        K+ G + L++ H   A   
Sbjct: 127 ASNAFNNTK-LCLKLETGMNRLGLRFDELEEAVPIL-----KQRGGVDLLLQHFGIAGS- 179

Query: 171 SSHVNSVQLERFRTLISHYK------------GIEA---SLASSSGILLGPNYHFQLTRP 215
                   +ER    ++HY+            G+E    S+++S  +           RP
Sbjct: 180 --------VERLAETLNHYEAFKNAKKFLHDSGVEVRATSVSNSGAVEQRIGLEETYIRP 231

Query: 216 GISLYGGTDKINKSHPMQTVVTAEARIIL----IRKALAGELVSYGGQKKLTRDSLIAVA 271
           GI LYG     +K+       +     +L    +RK   GE V Y     +  DS+I + 
Sbjct: 232 GIMLYGPRSVTSKNLWNGKFASCFYTKVLHHFPLRK---GEGVGY-DLTPVKADSVIVML 287

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEV 330
            IGYADG+  T  G+  + +P      +   +  +  + G+I MDM    +  + +   +
Sbjct: 288 PIGYADGFLCTYKGMPIKVTP------EDAAEPIIGTVHGRINMDMAAVVVYPEEVGKNI 341

Query: 331 GD---------YIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G+          I ++G DI  ++ A++ G   + L   +  R  + Y
Sbjct: 342 GNIMAAVKKESRIHVWGDDI--EEKAVSVGAIPHQLTCGLSIRVPRIY 387


>gi|258423662|ref|ZP_05686550.1| alanine racemase 2 [Staphylococcus aureus A9635]
 gi|257846160|gb|EEV70186.1| alanine racemase 2 [Staphylococcus aureus A9635]
          Length = 361

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 148/338 (43%), Gaps = 43/338 (12%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQ 140
           ++       FD      +  ++P LT+Y    +        L+ +   +R G      ++
Sbjct: 79  VYE------FDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIK 132

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKGIE 193
           E L   H++ N K+  +S + +H   AD+      +V+  ++  ++         +  I 
Sbjct: 133 EVLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMDIVEALLSEGYQFDLIH 191

Query: 194 ASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKA 248
           A  ++S    G +L P  H    R GI+LYG      +N+ H +   +T +A +I +R+ 
Sbjct: 192 AQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQ-HDIVQSLTVKAHVIQVREV 248

Query: 249 LAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
            AG+   Y    ++T+++  +AV  IGY DG   T +              +  I G   
Sbjct: 249 QAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGKRY 296

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
           PI   + M     ++ D  ++   D + ++  DI++D+
Sbjct: 297 PIRA-LMMSHMFVEVDD--NVHAQDDVILYNNDIRIDE 331


>gi|292559088|gb|ADE32089.1| Alanine racemase [Streptococcus suis GZ1]
          Length = 367

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 164/376 (43%), Gaps = 33/376 (8%)

Query: 8   RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++++L A+  N+   M  L       AVVK NAYG G   +A  L ++    F V++++
Sbjct: 10  QIRVNLDAIAENFEQVMTNLPPKTEAFAVVKANAYGHGAVAVAKKL-SSQAAGFCVSNLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR    +  I +L G+ P +   +    N+   ++S+  L     L +        
Sbjct: 69  EALELRKAGIEHPILIL-GVVPVRFLPVAHQLNISVTVASLDWLQDAKGLEADLSGLTVH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184
           L++DTG  R+G      L        +    +  + +H A AD+   +H  S QL  F+ 
Sbjct: 128 LKLDTGMGRIGFRKIADLLQAIAILEELEYDIEGVYTHFATADEVDQAHFES-QLSVFKE 186

Query: 185 LISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
            +       + I AS +++S  +   +  F L R G  LYG       +     +Q  ++
Sbjct: 187 FLDVLPITPRWIHASNSATS--IWHADTVFNLVRLGNILYGLNPSGRVLELPFDVQPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I+ +++  AG  + YG     T    IA   IGYADG   +L GL      SV + 
Sbjct: 245 LVSEIVHVKQVEAGTTIGYGATYHSTDSEWIATVPIGYADGLVRSLQGL------SVLVD 298

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G+         I+G+I+MD     +  +  +  G  + + G D    I + + A   GT 
Sbjct: 299 GQA------CEIVGRISMDQITIRLPHAYPL--GQKVTLIGQDGDKTISVQEWADRIGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + +
Sbjct: 351 NYEVVCLLTDRLPRIF 366


>gi|22125742|ref|NP_669165.1| alanine racemase [Yersinia pestis KIM 10]
 gi|108812106|ref|YP_647873.1| alanine racemase [Yersinia pestis Nepal516]
 gi|145599043|ref|YP_001163119.1| alanine racemase [Yersinia pestis Pestoides F]
 gi|149366357|ref|ZP_01888391.1| putative alanine racemase [Yersinia pestis CA88-4125]
 gi|153950742|ref|YP_001400629.1| alanine racemase [Yersinia pseudotuberculosis IP 31758]
 gi|165925439|ref|ZP_02221271.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938444|ref|ZP_02227001.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008560|ref|ZP_02229458.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166210808|ref|ZP_02236843.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167422631|ref|ZP_02314384.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426368|ref|ZP_02318121.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468736|ref|ZP_02333440.1| alanine racemase [Yersinia pestis FV-1]
 gi|218928815|ref|YP_002346690.1| alanine racemase [Yersinia pestis CO92]
 gi|229841680|ref|ZP_04461838.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843797|ref|ZP_04463940.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229894540|ref|ZP_04509722.1| putative alanine racemase [Yersinia pestis Pestoides A]
 gi|229902427|ref|ZP_04517546.1| putative alanine racemase [Yersinia pestis Nepal516]
 gi|270490394|ref|ZP_06207468.1| alanine racemase [Yersinia pestis KIM D27]
 gi|294504124|ref|YP_003568186.1| alanine racemase [Yersinia pestis Z176003]
 gi|21958663|gb|AAM85416.1|AE013788_2 putative alanine racemase [Yersinia pestis KIM 10]
 gi|108775754|gb|ABG18273.1| alanine racemase [Yersinia pestis Nepal516]
 gi|115347426|emb|CAL20330.1| putative alanine racemase [Yersinia pestis CO92]
 gi|145210739|gb|ABP40146.1| alanine racemase [Yersinia pestis Pestoides F]
 gi|149290731|gb|EDM40806.1| putative alanine racemase [Yersinia pestis CA88-4125]
 gi|152962237|gb|ABS49698.1| alanine racemase [Yersinia pseudotuberculosis IP 31758]
 gi|165913559|gb|EDR32179.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922548|gb|EDR39699.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992942|gb|EDR45243.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207988|gb|EDR52468.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166958478|gb|EDR55499.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167054723|gb|EDR64527.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229680473|gb|EEO76570.1| putative alanine racemase [Yersinia pestis Nepal516]
 gi|229689405|gb|EEO81468.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694143|gb|EEO84191.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229703559|gb|EEO90576.1| putative alanine racemase [Yersinia pestis Pestoides A]
 gi|262362240|gb|ACY58961.1| alanine racemase [Yersinia pestis D106004]
 gi|262366174|gb|ACY62731.1| alanine racemase [Yersinia pestis D182038]
 gi|270338898|gb|EFA49675.1| alanine racemase [Yersinia pestis KIM D27]
 gi|294354583|gb|ADE64924.1| alanine racemase [Yersinia pestis Z176003]
 gi|320014832|gb|ADV98403.1| putative alanine racemase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 409

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 151/361 (41%), Gaps = 36/361 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I   AL  N   M  L  N  T  A++K +AYG     + P +    VQ   V S +E
Sbjct: 47  LEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASNQE 106

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
              +R   +T Q        +   Q+ + +D   LI   +   QL   +KL    +    
Sbjct: 107 LKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRIHL 166

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           AL    G +R GL + +A           L  L++  I+SH    D  +S + +  L RF
Sbjct: 167 ALN-SAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPVED--ASEIKA-DLARF 222

Query: 183 RTLIS--------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +              + I+  +A++   L  P+    + R G   YG T     S   + 
Sbjct: 223 QQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTIA---STEYKR 279

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S          
Sbjct: 280 VMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN--------- 330

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   I+G  +P+LGK +M+  + D+TD   + +GD + +FG     +I+ +++   S
Sbjct: 331 --AGHVIIQGQRLPVLGKTSMNTVIVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIEDLS 388

Query: 351 G 351
           G
Sbjct: 389 G 389


>gi|15924389|ref|NP_371923.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926979|ref|NP_374512.1| hypothetical protein SA1231 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267887|ref|YP_001246830.1| alanine racemase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393950|ref|YP_001316625.1| alanine racemase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979718|ref|YP_001441977.1| hypothetical protein SAHV_1387 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315276|ref|ZP_04838489.1| hypothetical protein SauraC_03777 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253733354|ref|ZP_04867519.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006188|ref|ZP_05144789.2| hypothetical protein SauraM_06955 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795546|ref|ZP_05644525.1| alanine racemase [Staphylococcus aureus A9781]
 gi|258413354|ref|ZP_05681630.1| alanine racemase [Staphylococcus aureus A9763]
 gi|258420539|ref|ZP_05683481.1| alanine racemase [Staphylococcus aureus A9719]
 gi|258434689|ref|ZP_05688763.1| alanine racemase 2 [Staphylococcus aureus A9299]
 gi|258444735|ref|ZP_05693064.1| alanine racemase 2 [Staphylococcus aureus A8115]
 gi|258447430|ref|ZP_05695574.1| alanine racemase [Staphylococcus aureus A6300]
 gi|258449271|ref|ZP_05697374.1| alanine racemase 2 [Staphylococcus aureus A6224]
 gi|258454651|ref|ZP_05702615.1| alanine racemase 2 [Staphylococcus aureus A5937]
 gi|269203021|ref|YP_003282290.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892892|ref|ZP_06301127.1| alanine racemase 2 [Staphylococcus aureus A8117]
 gi|282929363|ref|ZP_06336928.1| diaminopimelate epimerase [Staphylococcus aureus A10102]
 gi|295406346|ref|ZP_06816153.1| alanine racemase [Staphylococcus aureus A8819]
 gi|296275259|ref|ZP_06857766.1| alanine racemase [Staphylococcus aureus subsp. aureus MR1]
 gi|297244575|ref|ZP_06928458.1| diaminopimelate epimerase alternative form [Staphylococcus aureus
           A8796]
 gi|54036716|sp|P63483|ALR2_STAAN RecName: Full=Alanine racemase 2
 gi|54040681|sp|P63482|ALR2_STAAM RecName: Full=Alanine racemase 2
 gi|13701196|dbj|BAB42491.1| SA1231 [Staphylococcus aureus subsp. aureus N315]
 gi|14247170|dbj|BAB57561.1| Alanine racemase 2 [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740956|gb|ABQ49254.1| Alanine racemase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946402|gb|ABR52338.1| Alanine racemase [Staphylococcus aureus subsp. aureus JH1]
 gi|156721853|dbj|BAF78270.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253728622|gb|EES97351.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789518|gb|EEV27858.1| alanine racemase [Staphylococcus aureus A9781]
 gi|257839918|gb|EEV64386.1| alanine racemase [Staphylococcus aureus A9763]
 gi|257843487|gb|EEV67894.1| alanine racemase [Staphylococcus aureus A9719]
 gi|257849050|gb|EEV73032.1| alanine racemase 2 [Staphylococcus aureus A9299]
 gi|257850228|gb|EEV74181.1| alanine racemase 2 [Staphylococcus aureus A8115]
 gi|257853621|gb|EEV76580.1| alanine racemase [Staphylococcus aureus A6300]
 gi|257857259|gb|EEV80157.1| alanine racemase 2 [Staphylococcus aureus A6224]
 gi|257863034|gb|EEV85798.1| alanine racemase 2 [Staphylococcus aureus A5937]
 gi|262075311|gb|ACY11284.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282589063|gb|EFB94165.1| diaminopimelate epimerase [Staphylococcus aureus A10102]
 gi|282764889|gb|EFC05014.1| alanine racemase 2 [Staphylococcus aureus A8117]
 gi|285817077|gb|ADC37564.1| Diaminopimelate epimerase [Staphylococcus aureus 04-02981]
 gi|294968934|gb|EFG44956.1| alanine racemase [Staphylococcus aureus A8819]
 gi|297178605|gb|EFH37851.1| diaminopimelate epimerase alternative form [Staphylococcus aureus
           A8796]
 gi|312829794|emb|CBX34636.1| alanine racemase, C-terminal domain protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315131207|gb|EFT87191.1| hypothetical protein CGSSa03_06679 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727451|gb|EGG63907.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 361

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 150/340 (44%), Gaps = 47/340 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
                   +++ +L+    +  ++P LT+Y    +        L+ +   +R G      
Sbjct: 77  ------NAVYEFDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKG 191
           ++E L   H++ N K+  +S + +H   AD+      +V+  ++  ++         +  
Sbjct: 131 IKEVLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDL 189

Query: 192 IEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIR 246
           I A  ++S    G +L P  H    R GI+LYG      +N+ H +   +T +A +I +R
Sbjct: 190 IHAQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQ-HDIVQSLTVKAHVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +  AG+   Y    ++T+++  +AV  IGY DG   T +              +  I G 
Sbjct: 247 EVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
             PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 295 RYPI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 331


>gi|21283016|ref|NP_646104.1| hypothetical protein MW1287 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486240|ref|YP_043461.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297207946|ref|ZP_06924378.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912030|ref|ZP_07129473.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204455|dbj|BAB95152.1| MW1287 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244683|emb|CAG43116.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887414|gb|EFH26315.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886276|gb|EFK81478.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 361

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 150/340 (44%), Gaps = 47/340 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLVPDATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
                   +++ +L+    +  ++P LT+Y    +        L+ +   +R G      
Sbjct: 77  ------NAVYEFDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKG 191
           ++E L   H++ N K+  +S + +H   AD+      +V+  ++  ++         +  
Sbjct: 131 IKEVLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDL 189

Query: 192 IEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIR 246
           I A  ++S    G +L P  H    R GI+LYG      +N+ H +   +T +A +I +R
Sbjct: 190 IHAQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQ-HDIVQSLTVKAHVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +  AG+   Y    ++T+++  +AV  IGY DG   T +              +  I G 
Sbjct: 247 EVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
             PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 295 RYPI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 331


>gi|332669025|ref|YP_004452033.1| alanine racemase [Cellulomonas fimi ATCC 484]
 gi|332338063|gb|AEE44646.1| alanine racemase [Cellulomonas fimi ATCC 484]
          Length = 382

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 147/351 (41%), Gaps = 48/351 (13%)

Query: 8   RLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           RL +D  A+  N      L+G AR    AVVK + +G G   +A      G     VT+V
Sbjct: 18  RLLVDPAAVAAN---TRLLAGRARGDLMAVVKADGFGHGAVTVARTALAHGATSLGVTTV 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-----VPQLTFYSKLMSCGV 120
            E + LR      R  VL  ++P       D +    +++     VP       ++    
Sbjct: 75  AEALALR--DAGLRAPVLSWLNP------VDADFASAVAAGVELAVPDAAHLRAVLDTAP 126

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLI--ISHLACADDPSSHVNSV 177
                L +DTG  R G            + + ++ G++ ++  + HLACAD P    N+ 
Sbjct: 127 GARVHLHLDTGLARDGAEPAAWPSLCRLARSAERTGRVRVVGVMGHLACADRPRHPANAE 186

Query: 178 QLERFRTLI--SHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG----GTDKINK 228
              RF   +  +   G+  S   LA+++  L  P  H    R G  L G    GT ++  
Sbjct: 187 GRSRFAWGVRTARAAGLRPSVRHLAATAATLTDPRSHHTTVRVGAGLVGIDPSGTTRLAW 246

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +      ++  A ++ +R+  AG  V YG      R + +A+  +GYADG P  + G   
Sbjct: 247 A------MSLTAPVVSVRRVRAGTPVGYGHTWTAPRATTLALLPVGYADGLPRAVPGR-- 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339
                     +  ++G   P++G+++MD T+ D+ D   +  G+   + GP
Sbjct: 299 ---------AEVLLRGRRRPVVGRVSMDQTVVDVGDE-PVRPGEVAVLLGP 339


>gi|20137378|sp|Q8ZFL4|ALR2_YERPE RecName: Full=Alanine racemase 2
          Length = 394

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 151/361 (41%), Gaps = 36/361 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I   AL  N   M  L  N  T  A++K +AYG     + P +    VQ   V S +E
Sbjct: 32  LEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASNQE 91

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
              +R   +T Q        +   Q+ + +D   LI   +   QL   +KL    +    
Sbjct: 92  LKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRIHL 151

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           AL    G +R GL + +A           L  L++  I+SH    D  +S + +  L RF
Sbjct: 152 ALN-SAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPVED--ASEIKA-DLARF 207

Query: 183 RTLIS--------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +              + I+  +A++   L  P+    + R G   YG T     S   + 
Sbjct: 208 QQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTIA---STEYKR 264

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S          
Sbjct: 265 VMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN--------- 315

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   I+G  +P+LGK +M+  + D+TD   + +GD + +FG     +I+ +++   S
Sbjct: 316 --AGHVIIQGQRLPVLGKTSMNTVIVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIEDLS 373

Query: 351 G 351
           G
Sbjct: 374 G 374


>gi|228476139|ref|ZP_04060847.1| alanine racemase 2 [Staphylococcus hominis SK119]
 gi|228269962|gb|EEK11442.1| alanine racemase 2 [Staphylococcus hominis SK119]
          Length = 357

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 148/339 (43%), Gaps = 45/339 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY  G E        AG+  F  TS++E V++R   P A IF++  
Sbjct: 19  VKNNQSIMAVVKNNAYHYGLEFAVRTFLEAGIHTFSTTSLKEAVRIRKLAPHATIFLMNA 78

Query: 86  IHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQE 141
           ++       FDT   N I +  ++P L +Y +  S        L+ +   +R G  +L E
Sbjct: 79  VYD------FDTVRNNNIQM--TLPSLEYYYQYKSELKDINVHLEFENLLHRSGFKNLDE 130

Query: 142 ALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLIS-------HYKGI 192
             +  H+  N    +++++   +H   AD+       ++ E +  +++        ++ I
Sbjct: 131 IKEVLHHHENDNGSKMNIVGLWTHFGYADEFDVPEYGIEREAWLNVVNTLLNEGYQFELI 190

Query: 193 EASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRK 247
            A  ++S    G  L P YH    R GI+LYG     K+ + H ++  +T +  +I +R+
Sbjct: 191 HAQNSASYYREGQQLLP-YHTH-ARVGIALYGSRPYSKLGE-HEIEQALTVKGNVIQVRE 247

Query: 248 ALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              G+   Y    +   D + +AV  IGY DG       L    +    + GK +     
Sbjct: 248 VNKGDYCGYSFAFEAMHDHTHLAVVDIGYGDGI------LKKRATHEALINGKRY----- 296

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
            PI   + M     ++ D   +   D + ++  DI++D+
Sbjct: 297 -PIRA-LMMSHMFVEVDD--DVHAQDEVILYNNDIRIDE 331


>gi|51596715|ref|YP_070906.1| alanine racemase [Yersinia pseudotuberculosis IP 32953]
 gi|51589997|emb|CAH21630.1| putative alanine racemase [Yersinia pseudotuberculosis IP 32953]
          Length = 409

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 151/361 (41%), Gaps = 36/361 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I   AL  N   M  L  N  T  A++K +AYG     + P +    VQ   V S +E
Sbjct: 47  LEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASNQE 106

Query: 68  GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPY 124
              +R   +T Q        +   Q+ + +D   LI   +   QL   +KL    +    
Sbjct: 107 LKMVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRIHL 166

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
           AL    G +R GL + +A           L  L++  I+SH    D  +S + +  L RF
Sbjct: 167 ALN-SAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPVED--ASEIKA-DLARF 222

Query: 183 RTLIS--------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +              + I+  +A++   L  P+    + R G   YG T     S   + 
Sbjct: 223 QQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTIA---STEYKR 279

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S          
Sbjct: 280 VMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN--------- 330

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   I+G  +P+LGK +M+  + D+TD   + +GD + +FG     +I+ +++   S
Sbjct: 331 --AGHVIIQGQRLPVLGKTSMNTVIVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIEDLS 388

Query: 351 G 351
           G
Sbjct: 389 G 389


>gi|329733446|gb|EGG69778.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 361

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 151/340 (44%), Gaps = 47/340 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
                   +++ +L+    +  ++P LT+Y    +        L+ +   +R G      
Sbjct: 77  ------NAVYEFDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSH--VNSVQLERFRTLIS---HYKG 191
           ++E L   H + N K+  +S + +H   AD  D S +    S  +E   +L+S    +  
Sbjct: 131 IKEVLKDHHQNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVESLLSEGYQFDL 189

Query: 192 IEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIR 246
           I A  ++S    G +L P  H    R GI+LYG      +N+ H +   +T +A +I +R
Sbjct: 190 IHAQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQ-HDIVQSLTVKAHVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +  AG+   Y    ++T+++  +AV  IGY DG   T +              +  I G 
Sbjct: 247 EVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
             PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 295 RYPI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 331


>gi|254507449|ref|ZP_05119584.1| alanine racemase 1 [Vibrio parahaemolyticus 16]
 gi|219549705|gb|EED26695.1| alanine racemase 1 [Vibrio parahaemolyticus 16]
          Length = 113

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 11/121 (9%)

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
           AGE V YGG+    RD+ + V AIGY DGYP T        +P+   G    + G  VPI
Sbjct: 3   AGESVGYGGKWTSERDTKVGVIAIGYGDGYPRT--------APN---GTPVRVNGREVPI 51

Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            G+++MDM   D+    +  VGD   ++G D+  + VA   GT  Y+L+ ++ +R    Y
Sbjct: 52  AGRVSMDMLTVDLGPEATDHVGDEAILWGKDLPAEQVAAHIGTIAYELVTKLTSRVEMEY 111

Query: 370 T 370
           +
Sbjct: 112 S 112


>gi|325479259|gb|EGC82355.1| alanine racemase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 373

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 151/364 (41%), Gaps = 42/364 (11%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARI 80
             + +++      AVVK NAYGLG   IA  + +  +  F V    E   LRL      I
Sbjct: 18  EKVKSMNNQTPICAVVKANAYGLGAVPIATYIEDH-ISYFAVARYSEAKALRLSGIIKPI 76

Query: 81  FVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-YSKLMSCGVSHPYALQVDTGFNRLGL-- 137
            +L G    +E I      I +       TF   K ++  ++    L +DTG  RLG   
Sbjct: 77  LIL-GYVSVEEAIECAEYDIDICIFDMDYTFEIDKALNKKLNGH--LAIDTGHTRLGFRN 133

Query: 138 -SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK---GIE 193
              Q+ L       N K  ++    +H A AD+  +  + +Q + F   IS+ +    IE
Sbjct: 134 YETQKILSLK----NLKNIRIRGAFTHYATADEKDTSFSKLQTKLFEETISNVRDELNIE 189

Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYG--GTD--KINKSHPMQTVVTAEARIILIRKAL 249
               ++S   +  +    + R GIS+YG   +D  K   S  ++      +RI  ++   
Sbjct: 190 NIHIANSAAGISFDVKSDMIRLGISMYGIYPSDYLKDTSSIDLEKTFRFMSRIAFVKDVK 249

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
            G  +SYG      +D  IA   IGYADGY    S +           G+  + G    +
Sbjct: 250 KGTPISYGRTFYTKKDMKIATVPIGYADGYFRAFSNI-----------GEVLVNGENARV 298

Query: 310 LGKITMDMTMFDITDSLSIEVGD----YIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            G++ MD  M D+++ +  ++GD    Y  I+    K+D +A       Y+L+     R 
Sbjct: 299 CGRVCMDQMMIDVSN-IKCKIGDEVEIYYDIYKEANKIDTIA-------YELMTSFDMRL 350

Query: 366 AKFY 369
            + Y
Sbjct: 351 ERVY 354


>gi|115361255|ref|YP_778392.1| alanine racemase [Burkholderia ambifaria AMMD]
 gi|115286583|gb|ABI92058.1| alanine racemase [Burkholderia ambifaria AMMD]
          Length = 401

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 142/343 (41%), Gaps = 36/343 (10%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           V K + +G G   +A    +A V  F V S EEG  +R       + +     P     +
Sbjct: 69  VCKGDGFGFGAATVARLAADARVDGFCVGSPEEGAAIRAAGINHEVLLFASTLPEDAARV 128

Query: 95  FDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL 154
               L   I S+  L  +   +  G++    +++D GF R G    +  +       + +
Sbjct: 129 ASLGLTVTIQSMESLHAF---VYAGIAVDAFVEIDPGFGRFGFLPSQWQEAFRALAAQSV 185

Query: 155 GQLSLIISHLACADDPSSHVNSVQLERFRTLISH--------YKGIEASLASSSGILLGP 206
            +L  I +HL+     S  V++V   +     +         +  +   LASS  ++  P
Sbjct: 186 VRLKGIYTHLS-----SPGVDTVTGRQAGVFDAALADARAAGFDDLTTMLASSRVMIAHP 240

Query: 207 NYHFQLTRPGISLYGGTDK-INKSHPMQTVVTA-EARIILIRKALAGEL--VSYGGQKKL 262
              ++   PG  LYG  D+   +  P+Q ++ A  ARII +++  AG +  + Y    +L
Sbjct: 241 ELSYRAVDPGRLLYGALDREWMERVPLQPMLRAVRARIIHVQQHPAGSMLGIGYAAPIRL 300

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
            R   + V  IG+ DG           H P +   G   ++G    +LG+ ++  T+ D+
Sbjct: 301 ERAMRVGVVPIGFGDGL---------NHVPPL---GHVLVRGVQARVLGRRSLQHTVIDL 348

Query: 323 TDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRI 361
           TD     +G  + + G D    I +D++A        +LL R+
Sbjct: 349 TDLPDAGIGSVVTLVGEDGGKRITIDELADTLKLPVMELLPRL 391


>gi|298694693|gb|ADI97915.1| probable alanine racemase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 336

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 47/332 (14%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++          
Sbjct: 2   AVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPNATIFLM--------NA 53

Query: 94  IFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQEALDFT 146
           +++ +L+    +  ++P LT+Y    +        L+ +   +R G      ++E L   
Sbjct: 54  VYEFDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKEVLKDH 113

Query: 147 HNSFNKKLGQLSLIISHLACAD--DPSSH--VNSVQLERFRTLIS---HYKGIEASLASS 199
           H + N K+  +S + +H   AD  D S +    S  +E    L+S    +  I A  ++S
Sbjct: 114 HQNQNAKM-IISGLWTHFGYADEFDVSDYNIERSQWMEIVEALLSEGYQFDLIHAQNSAS 172

Query: 200 ---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELV 254
               G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  AG+  
Sbjct: 173 FYREGQILLP--HHTHARVGIALYGSRPYSSLNQHEIVQS-LTVKAHVIQVREVQAGDYC 229

Query: 255 SYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
            Y    ++T+++  +AV  IGY DG   T +              +  I G   PI  + 
Sbjct: 230 GYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGKRYPI--RA 275

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
            M   MF   D  ++   D + ++  DI++D+
Sbjct: 276 LMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 306


>gi|283470613|emb|CAQ49824.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus ST398]
          Length = 361

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 152/340 (44%), Gaps = 47/340 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
                   +++ +L+    +  ++P LT+Y    +        L+ +   +R G      
Sbjct: 77  ------NAVYEFDLVREHQIHMTLPSLTYYYNHKNDLSGIHVHLEFENLLHRSGFKDLNE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSH--VNSVQLERFRTLIS---HYKG 191
           ++E L   H++ N K+  +S + +H   AD  D S +    S  +E   +L+S    +  
Sbjct: 131 IKEVLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVESLLSEGYQFDL 189

Query: 192 IEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIR 246
           I A  ++S    G +L P  H    R GI+LYG      +N+ H +   +T +A +I +R
Sbjct: 190 IHAQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQ-HAIVQSLTVKANVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +  AG+   Y    ++T+++  +AV  IGY DG   T +              +  I G 
Sbjct: 247 EVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
             PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 295 RYPI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 331


>gi|57651899|ref|YP_186286.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161172|ref|YP_493989.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195126|ref|YP_499927.1| alanine racemase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221522|ref|YP_001332344.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509565|ref|YP_001575224.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140626|ref|ZP_03565119.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452194|ref|ZP_05700209.1| alanine racemase 2 [Staphylococcus aureus A5948]
 gi|262050354|ref|ZP_06023197.1| hypothetical protein SAD30_2197 [Staphylococcus aureus D30]
 gi|262053091|ref|ZP_06025262.1| hypothetical protein SA930_1088 [Staphylococcus aureus 930918-3]
 gi|282927786|ref|ZP_06335399.1| alanine racemase [Staphylococcus aureus A9765]
 gi|284024399|ref|ZP_06378797.1| alanine racemase [Staphylococcus aureus subsp. aureus 132]
 gi|294850734|ref|ZP_06791453.1| alanine racemase [Staphylococcus aureus A9754]
 gi|304381024|ref|ZP_07363679.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|20137472|sp|Q9EZ08|ALR2_STAA8 RecName: Full=Alanine racemase 2
 gi|81694524|sp|Q5HG21|ALR2_STAAC RecName: Full=Alanine racemase 2
 gi|57286085|gb|AAW38179.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127146|gb|ABD21660.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202684|gb|ABD30494.1| alanine racemase, putative [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374322|dbj|BAF67582.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368374|gb|ABX29345.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860131|gb|EEV82964.1| alanine racemase 2 [Staphylococcus aureus A5948]
 gi|259159014|gb|EEW44087.1| hypothetical protein SA930_1088 [Staphylococcus aureus 930918-3]
 gi|259161553|gb|EEW46152.1| hypothetical protein SAD30_2197 [Staphylococcus aureus D30]
 gi|269940894|emb|CBI49277.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282592040|gb|EFB97068.1| alanine racemase [Staphylococcus aureus A9765]
 gi|294822410|gb|EFG38860.1| alanine racemase [Staphylococcus aureus A9754]
 gi|302751228|gb|ADL65405.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340440|gb|EFM06379.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315195911|gb|EFU26276.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140793|gb|EFW32642.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142185|gb|EFW34003.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314075|gb|AEB88488.1| Alanine racemase 2 [Staphylococcus aureus subsp. aureus T0131]
 gi|329725317|gb|EGG61801.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 361

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 150/340 (44%), Gaps = 47/340 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
                   +++ +L+    +  ++P LT+Y    +        L+ +   +R G      
Sbjct: 77  ------NAVYEFDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKG 191
           ++E L   H++ N K+  +S + +H   AD+      +V+  ++  ++         +  
Sbjct: 131 IKEVLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDL 189

Query: 192 IEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIR 246
           I A  ++S    G +L P  H    R GI+LYG      +N+ H +   +T +A +I +R
Sbjct: 190 IHAQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQ-HDIVQSLTLKAHVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +  AG+   Y    ++T+++  +AV  IGY DG   T +              +  I G 
Sbjct: 247 EVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
             PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 295 RYPI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 331


>gi|253732036|ref|ZP_04866201.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724227|gb|EES92956.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 361

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 150/340 (44%), Gaps = 47/340 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
                   +++ +L+    +  ++P LT+Y    +        L+ +   +R G      
Sbjct: 77  ------NAVYEFDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKG 191
           ++E L   H++ N K+  +S + +H   AD+      +V+  ++  ++         +  
Sbjct: 131 IKEVLKDHHHNQNAKM-IISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDL 189

Query: 192 IEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIR 246
           I A  ++S    G +L P  H    R GI+LYG      +N+ H +   +T +A +I +R
Sbjct: 190 IHAQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQ-HDIVQSLTVKAHVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +  AG+   Y    ++T+++  +AV  IGY DG   T +              +  I G 
Sbjct: 247 EVHAGDYCGYSFAFEVTKNNTKLAVIDIGYGDGILRTRA------------KHEALINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
             PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 295 RYPI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 331


>gi|213026955|ref|ZP_03341402.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 174

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 13/162 (8%)

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELV 254
           SLA+S G+ L P +   L RPG++L+G   +   S P++   T    I+ ++    G  +
Sbjct: 26  SLANSCGMFLHPAWREDLCRPGVALFG-VAQPWFSTPLKPAFTLTLTILRVQDVPVGTPI 84

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            YG     TR   IA  + GYADG P  L        P+         +G  +P+LG++ 
Sbjct: 85  GYGSTVTTTRPLRIATVSAGYADGIPRNL------RPPAGVCW-----RGVRLPVLGRVC 133

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           MD  M D +  +    GD ++  G    L++VA A  T  Y+
Sbjct: 134 MDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYE 174


>gi|256027408|ref|ZP_05441242.1| alanine racemase, biosynthetic [Fusobacterium sp. D11]
 gi|289765372|ref|ZP_06524750.1| alanine racemase [Fusobacterium sp. D11]
 gi|289716927|gb|EFD80939.1| alanine racemase [Fusobacterium sp. D11]
          Length = 226

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 18/230 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++ID   LK N   +  ++ N     VVK NAYGLG  +I   L   G+  F V ++EE 
Sbjct: 5   VEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSVEITKILQEIGINFFGVANLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L+    + +I +L G     E I      + V ISS+ QL F   L++  ++    L+
Sbjct: 65  IELQEAGIKDKILIL-GASFEDELIEATKRGVHVAISSMGQLQF---LVNNKLNPNIHLK 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QLERFRT 184
            DTG  RLG  + EA        N  L  L  I SHL+ +D  +    +    Q+E+F+ 
Sbjct: 121 FDTGMTRLGFEVDEAKKIIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKFKK 179

Query: 185 LISHYKGIEASLASSSGILLGPNYHF----QLTRPGISLYGGTDKINKSH 230
           +++        +++S+GI    N+H      L R GI +Y  T   NK H
Sbjct: 180 IVNSLNLKYIHISNSAGI---TNFHNDIVGNLVRMGIGMYSFTG--NKKH 224


>gi|262171654|ref|ZP_06039332.1| alanine racemase [Vibrio mimicus MB-451]
 gi|261892730|gb|EEY38716.1| alanine racemase [Vibrio mimicus MB-451]
          Length = 407

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 152/375 (40%), Gaps = 55/375 (14%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L   ++N     + ++ + +  A++K +AYG G   + P +   G+    V S  E
Sbjct: 45  LEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNAE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +     G+   + D N+  +I +  Q     +L      +   ++
Sbjct: 105 ARAVRENGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAM---ELAELAKKNGKTVK 161

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  +D T  +  K+          ++ A  PS       +H  +   +
Sbjct: 162 VHMALNDGGMG-RNGIDMTTEAGKKEA---------VSIATQPSLSIVGIMTHFPNYDAD 211

Query: 181 RFRTLISHYKGIEASL---------------ASSSGILLGPNYHFQLTRPGISLYGGTDK 225
             RT ++++K   A L               A+S   L  P     + RPG  LYG    
Sbjct: 212 EVRTKLANFKQHSAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDL-P 270

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            N  +P  ++V+ + R+  + +   G  V Y      +RDS++A   +GY+DGYP     
Sbjct: 271 TNPEYP--SIVSFKTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK--- 325

Query: 286 LDSEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
                     +G K    I G    ++G  +M+ TM D+TD   +  G  + +FG   K 
Sbjct: 326 ----------MGNKAEVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQ-KN 374

Query: 344 DDVALASGTTNYDLL 358
             +A++    N +L+
Sbjct: 375 QSIAVSEMENNAELI 389


>gi|148273758|ref|YP_001223319.1| putative alanine racemase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831688|emb|CAN02657.1| putative alanine racemase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 385

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 166/387 (42%), Gaps = 48/387 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +ID  A+  N  ++ A +G     AVVK + YG G    A A    G     V  V E +
Sbjct: 18  RIDTGAISANVRALRAATGAPLVMAVVKADGYGHGAVASARAALAGGADRLGVVDVREAL 77

Query: 70  KLRLYTPQARIFVLYGIH-PGQE---KIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
            LR     A   VL  +H PG +    I  D +L   ++S+ Q+   ++     G +   
Sbjct: 78  ALRAAGIDA--PVLTWMHAPGADFATAIEADVDL--GLNSLRQVREVAEAARRVGRTAEV 133

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L+VDTG  R G++  E    +        +    L  + SHLA A       +  Q+  
Sbjct: 134 HLKVDTGLGRNGVTPAEWPAVVAEVQALVAEGRIHLGGVFSHLANA---GREEDRAQVRA 190

Query: 182 FRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH---- 230
           F   +   +  G+E     LA+++G L  P     + R GI +YG +  D +  +     
Sbjct: 191 FHQSVDVVRAAGLEPGIRHLAATAGALRVPEARLDMVRLGIGIYGISPLDGVTSADLGLV 250

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P  T+V +   ++ +++  A   VSYG   + +  + +A+ ++G+ADG P     L S  
Sbjct: 251 PAMTLVGS---VVAVKRVPADTGVSYGYTYRTSSATTLALVSLGFADGVPR----LASNR 303

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDM----TMFDITDSLSIEVGDYIQIFGPDI----K 342
           +P         I G    + G+I MD         + D + + VGD   +FG        
Sbjct: 304 APVA-------IHGARFRVSGRIAMDQFVVDVGDGVVDGIPVAVGDDAVLFGDPATGAPS 356

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++ A A+GT  Y+++ R+  R  + +
Sbjct: 357 VEEWAEATGTIGYEIVARVAGRVTRRF 383


>gi|323441183|gb|EGA98890.1| alanine racemase [Staphylococcus aureus O11]
          Length = 363

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 149/341 (43%), Gaps = 47/341 (13%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
                   +++ +L+    +  ++P LT+Y    +        L+ +   +R G      
Sbjct: 77  ------NAVYEFDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKG 191
           ++E L   H + N K+  +S + +H   AD+      +++  ++  ++         +  
Sbjct: 131 IKEVLKDHHQNQNAKMI-ISGLWTHFGYADEFDVSDYNIERSQWMEIVEALLTEGYQFDL 189

Query: 192 IEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINK-SHPMQTVVTAEARIILI 245
           I A  ++S    G +L P  H    R GI+LYG      +N+  H +   +T +A +I +
Sbjct: 190 IHAQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHQHDIVQSLTVKAHVIQV 247

Query: 246 RKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           R+  AG+   Y    ++T+++  +AV  IGY DG   T +              +  I G
Sbjct: 248 REVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALING 295

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
              PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 296 KRYPI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 333


>gi|227878363|ref|ZP_03996318.1| alanine racemase [Lactobacillus crispatus JV-V01]
 gi|227862042|gb|EEJ69606.1| alanine racemase [Lactobacillus crispatus JV-V01]
          Length = 376

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 140/335 (41%), Gaps = 30/335 (8%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A++ N  + M  L+   +  AVVK NAYG G  ++A      G     V  ++E
Sbjct: 11  VKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGAAGLCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR       I VL  + P    I    N+   I ++  L    K L    +     +
Sbjct: 71  ALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLEKEQLQLKVHI 130

Query: 127 QVDTGFNRLGLSLQEALDF-THNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182
            VD+G  R+G +  E  DF   N F  N     +  + +H A AD         Q+E+F 
Sbjct: 131 GVDSGMGRIGFNEDE--DFIAANKFLQNNDNFYVEGMFAHFASADSADDTYFKHQVEKFA 188

Query: 183 --RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-------MQ 233
             R+L++  K     + +++  +   +      R GI +YG     N   P       ++
Sbjct: 189 HMRSLLT-VKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDLKSSISLE 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G        
Sbjct: 248 PALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF------K 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
           V +G +        PI+G+I MD  M  +   + +
Sbjct: 302 VKVGDE------YCPIVGRICMDQFMVKMPKKMPL 330


>gi|256844406|ref|ZP_05549892.1| alanine racemase [Lactobacillus crispatus 125-2-CHN]
 gi|256849206|ref|ZP_05554639.1| alanine racemase [Lactobacillus crispatus MV-1A-US]
 gi|262047222|ref|ZP_06020180.1| alanine racemase [Lactobacillus crispatus MV-3A-US]
 gi|295692134|ref|YP_003600744.1| alanine racemase [Lactobacillus crispatus ST1]
 gi|312978404|ref|ZP_07790146.1| alanine racemase [Lactobacillus crispatus CTV-05]
 gi|256613484|gb|EEU18687.1| alanine racemase [Lactobacillus crispatus 125-2-CHN]
 gi|256713982|gb|EEU28970.1| alanine racemase [Lactobacillus crispatus MV-1A-US]
 gi|260572467|gb|EEX29029.1| alanine racemase [Lactobacillus crispatus MV-3A-US]
 gi|295030240|emb|CBL49719.1| Alanine racemase [Lactobacillus crispatus ST1]
 gi|310894747|gb|EFQ43819.1| alanine racemase [Lactobacillus crispatus CTV-05]
          Length = 376

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 140/335 (41%), Gaps = 30/335 (8%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A++ N  + M  L+   +  AVVK NAYG G  ++A      G     V  ++E
Sbjct: 11  VKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGAAGLCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR       I VL  + P    I    N+   I ++  L    K L    +     +
Sbjct: 71  ALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLEKEQLQLKVHI 130

Query: 127 QVDTGFNRLGLSLQEALDF-THNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182
            VD+G  R+G +  E  DF   N F  N     +  + +H A AD         Q+E+F 
Sbjct: 131 GVDSGMGRIGFNEDE--DFIAANKFLQNNDNFYVEGMFAHFASADSADDTYFKHQVEKFA 188

Query: 183 --RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-------MQ 233
             R+L++  K     + +++  +   +      R GI +YG     N   P       ++
Sbjct: 189 HMRSLLT-VKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDLKSSISLE 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G        
Sbjct: 248 PALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF------K 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
           V +G +        PI+G+I MD  M  +   + +
Sbjct: 302 VKVGDE------YCPIVGRICMDQFMVKMPKKMPL 330


>gi|224373382|ref|YP_002607754.1| alanine racemase [Nautilia profundicola AmH]
 gi|223589034|gb|ACM92770.1| alanine racemase [Nautilia profundicola AmH]
          Length = 324

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 74/366 (20%)

Query: 17  KNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75
           +N + ++N +S  N    AV+KDNAYG G    +  L   G+    V + +E   ++   
Sbjct: 9   QNLFDNLNKISKINPNILAVIKDNAYGHGIISFSKMLKEWGINKVCVKNNDEAEVIKSLF 68

Query: 76  PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQVDTGFNR 134
            +  IF     H G+       N    I+S+ QL            HPY  L++DTG +R
Sbjct: 69  EEIIIFFP---HTGRSA----KNFSYCINSLKQLK--------KNRHPYIHLKIDTGMHR 113

Query: 135 LGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191
            G+    L+EAL    +    K  ++  + +H  C+D+ ++ +  +Q ERF+ + +    
Sbjct: 114 NGILMDELEEALKIIKD----KEFEVRGVFTHFCCSDETANDM-FIQYERFKKIKNR--- 165

Query: 192 IEASLASSSGILLGPNYH-------------FQLTRPGISLYGGTDKINKSHPMQTVVTA 238
               +      +  P +H             F   RPGI+LYGG +        + V+  
Sbjct: 166 --VEVFCKENEIKIPYFHIANSYALDKLPDTFDYVRPGIALYGGIE------GYKPVMEL 217

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A ++  R    G    Y        D  +    +GY DG P   +G   + + +     
Sbjct: 218 RADVLSSRILKKGWGCGYNKIYMSDEDIEVTTIDVGYGDGLPYFKNGCKLKDAEA----- 272

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
                      LGKI+MD  +        + V D ++ F  +           T  YD+L
Sbjct: 273 -----------LGKISMDSMIIKGCFEKEVVVFDDVKEFVKNF---------DTITYDIL 312

Query: 359 VRIGTR 364
           V+I  R
Sbjct: 313 VKISPR 318


>gi|293190212|ref|ZP_06608708.1| alanine racemase [Actinomyces odontolyticus F0309]
 gi|292821028|gb|EFF79981.1| alanine racemase [Actinomyces odontolyticus F0309]
          Length = 422

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 149/399 (37%), Gaps = 47/399 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   + A +  A   A VK NAYG G   +A A  + G     V  + E   
Sbjct: 19  VDLAAIRHNLGVLRAAAPGALQLATVKANAYGHGLLPVARAALDGGADWLGVAQLAEAFT 78

Query: 71  LR-------LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSH 122
           LR       +    A I               + ++   +S    L    +     G   
Sbjct: 79  LRRGLDEAGVARADAPILAWISTSSSDFAAAIEADIDLSVSWTWVLADICAAAREAGRPA 138

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              +++DTG +R G +L +          + +  L  +    SH++ ADDPS   N+   
Sbjct: 139 RVHVKIDTGMSRAGSTLADLPALASALRMAADDGLVDVVGAWSHMSRADDPSEAGNASTA 198

Query: 180 ERFRTL-----ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKS 229
              R       I    G+      L+++SGIL     H+ + R GI LYG     ++  S
Sbjct: 199 SHVRIFEEGLAILADAGVTPRIRHLSATSGILWHREAHYDMVRAGIGLYGLSPDPEVATS 258

Query: 230 HPMQTVVTAEARIIL--IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +      E R  L  ++    G   SYGG         I +  +GY DG    L    
Sbjct: 259 EQLGLTPALELRAPLTSVKVIEEGTPASYGGTWVAPTRRWIGLVPLGYGDGI---LRAAS 315

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-------------TDSLSIEVGDYI 334
           ++    V      F      P++G++ MD  M D+             +       GD  
Sbjct: 316 NQARVVVHTASGPF----NAPLIGRVCMDQFMVDLGPAEGSPGTPTARSGQAPAIPGDIA 371

Query: 335 QIFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
            +FG  I      DD A A+GT NY+++  +G    + Y
Sbjct: 372 TLFGSGISGEALADDWAQAAGTINYEIVTHLGAHIPRIY 410


>gi|258621589|ref|ZP_05716622.1| Alanine racemase [Vibrio mimicus VM573]
 gi|258586207|gb|EEW10923.1| Alanine racemase [Vibrio mimicus VM573]
          Length = 407

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 151/375 (40%), Gaps = 55/375 (14%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L   ++N     + ++ + +  A++K +AYG G   + P +   G+    V S  E
Sbjct: 45  LEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNAE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +     G+   + D N+  +I +  Q     +L      +   ++
Sbjct: 105 ARAVRESGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAM---ELAELAKKNGKTVK 161

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  +D T  +  K+          ++ A  PS       +H  +   +
Sbjct: 162 VHMALNDGGMG-RNGIDMTTEAGKKEA---------ISIATQPSLSIVGIMTHFPNYDAD 211

Query: 181 RFRTLISHYKGIEASL---------------ASSSGILLGPNYHFQLTRPGISLYGGTDK 225
             RT ++ +K   A L               A+S   L  P     + RPG  LYG    
Sbjct: 212 EVRTKLASFKQHSAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDL-P 270

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            N  +P  ++V+ + R+  + +   G  V Y      +RDS++A   +GY+DGYP     
Sbjct: 271 TNPEYP--SIVSFKTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK--- 325

Query: 286 LDSEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
                     +G K    I G    ++G  +M+ TM D+TD   +  G  + +FG   K 
Sbjct: 326 ----------MGNKAEVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQ-KN 374

Query: 344 DDVALASGTTNYDLL 358
             +A++    N +L+
Sbjct: 375 QSIAVSEMENNAELI 389


>gi|11991216|gb|AAG42250.1|AF306669_7 alanine racemase [Staphylococcus aureus]
          Length = 336

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 47/332 (14%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++          
Sbjct: 2   AVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLM--------NA 53

Query: 94  IFDTNLI---PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQEALDFT 146
           +++ +L+    +  ++P LT+Y    +        L+ +   +R G      ++E L   
Sbjct: 54  VYEFDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKEVLKDH 113

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKGIEASLASS 199
           H++ N K+  +S + +H   AD+      +V+  ++  ++         +  I A  ++S
Sbjct: 114 HHNQNAKM-IISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIHAQNSAS 172

Query: 200 ---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELV 254
               G +L P  H    R GI+LYG      +N+ H +   +T +A +I +R+  AG+  
Sbjct: 173 FYREGQILLP--HHTHARVGIALYGSRPYSSLNQ-HDIVQSLTLKAHVIQVREVQAGDYC 229

Query: 255 SYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
            Y    ++T+++  +AV  IGY DG   T +              +  I G   PI  + 
Sbjct: 230 GYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGKRYPI--RA 275

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
            M   MF   D  ++   D + ++  DI++D+
Sbjct: 276 LMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 306


>gi|258627600|ref|ZP_05722377.1| Alanine racemase [Vibrio mimicus VM603]
 gi|258580182|gb|EEW05154.1| Alanine racemase [Vibrio mimicus VM603]
          Length = 407

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 151/375 (40%), Gaps = 55/375 (14%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L   ++N     + ++ + +  A++K +AYG G   + P +   G+    V S  E
Sbjct: 45  LEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNAE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +     G+   + D N+  +I +  Q     +L      +   ++
Sbjct: 105 ARAVRESGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAM---ELAELAKKNGKTVK 161

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  +D T  +  K+          ++ A  PS       +H  +   +
Sbjct: 162 VHMALNDGGMG-RNGIDMTTEAGKKEA---------VSIATQPSLSIVGIMTHFPNYDAD 211

Query: 181 RFRTLISHYKGIEASL---------------ASSSGILLGPNYHFQLTRPGISLYGGTDK 225
             RT ++ +K   A L               A+S   L  P     + RPG  LYG    
Sbjct: 212 EVRTKLASFKQHSAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDL-P 270

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            N  +P  ++V+ + R+  + +   G  V Y      +RDS++A   +GY+DGYP     
Sbjct: 271 TNPEYP--SIVSFKTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK--- 325

Query: 286 LDSEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
                     +G K    I G    ++G  +M+ TM D+TD   +  G  + +FG   K 
Sbjct: 326 ----------MGNKAEVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQ-KN 374

Query: 344 DDVALASGTTNYDLL 358
             +A++    N +L+
Sbjct: 375 QSIAVSEMENNAELI 389


>gi|251810827|ref|ZP_04825300.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876165|ref|ZP_06285032.1| putative alanine racemase [Staphylococcus epidermidis SK135]
 gi|251805662|gb|EES58319.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295190|gb|EFA87717.1| putative alanine racemase [Staphylococcus epidermidis SK135]
 gi|329732928|gb|EGG69273.1| putative alanine racemase [Staphylococcus epidermidis VCU028]
          Length = 357

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 147/342 (42%), Gaps = 51/342 (14%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY  G E        A +  F  TS+ E +++R   P+A IF++  
Sbjct: 19  VKNNEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIRVRKIAPEATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLIP---VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
            +P     ++D +L+    +  ++P L +Y K           L+ +   +R G      
Sbjct: 77  -NP-----VYDFDLVKRYDIHMTLPSLNYYYKYKQNLKGIHVHLEYENLLHRSGFRNIEE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER------FRTLIS---HY 189
           ++E L   H+  N+    +S I +H   AD+    V+  ++ER        TL++   H+
Sbjct: 131 IREVLK-DHDQNNQDKMIISGIWTHFGYADEFD--VDEYKMERDAWLNLINTLLNENYHF 187

Query: 190 KGIEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIIL 244
             I +  ++S      +L P  H    R GI+LYG      IN+    Q+ +T +  +I 
Sbjct: 188 DMIHSQNSASYFRENQMLLP--HHTHARVGIALYGSRPYSLINEERITQS-LTVKGNVIQ 244

Query: 245 IRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           +R    G+   Y    ++  D + +AV  IGY DG       L S       + GK +  
Sbjct: 245 VRDVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGI------LKSRAKHEAIINGKRY-- 296

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
               PI   + M     ++ D   +   D + ++  DI++D+
Sbjct: 297 ----PIRA-LMMSHMFIEVDD--EVHAQDEVILYNKDIRIDE 331


>gi|161506851|ref|YP_001576805.1| alanine racemase [Lactobacillus helveticus DPC 4571]
 gi|172048359|sp|A8YXI3|ALR_LACH4 RecName: Full=Alanine racemase
 gi|160347840|gb|ABX26514.1| Alanine racemase [Lactobacillus helveticus DPC 4571]
          Length = 376

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 133/331 (40%), Gaps = 26/331 (7%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K++L A++ N  + M  L  N +  AVVK N YG G  ++A      G   F V  ++E
Sbjct: 11  VKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR       I VL  + P    I    N+   + ++  L    K L    +     L
Sbjct: 71  ALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDAEKYLAKENLQLKIHL 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +D+G  R+G +  +      N F  N     +  + +H A AD         Q E+F+ 
Sbjct: 131 GIDSGMGRIGFNEDDEF-VAANKFLENNNNFFIEGMFAHFASADSDDETYFKHQCEKFKH 189

Query: 185 LIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-------MQTV 235
           + S    K     + +++  +        L R GI +YG     N S P       ++  
Sbjct: 190 MKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIELEPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G        V 
Sbjct: 250 LSFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------KVK 303

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
           +G +         I+G+I MD  M  +   +
Sbjct: 304 VGDE------YCSIVGRICMDQFMVKMPKKM 328


>gi|57866855|ref|YP_188547.1| alanine racemase [Staphylococcus epidermidis RP62A]
 gi|242242676|ref|ZP_04797121.1| alanine racemase [Staphylococcus epidermidis W23144]
 gi|57637513|gb|AAW54301.1| alanine racemase family protein [Staphylococcus epidermidis RP62A]
 gi|242233812|gb|EES36124.1| alanine racemase [Staphylococcus epidermidis W23144]
          Length = 357

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 147/342 (42%), Gaps = 51/342 (14%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY  G E        A +  F  TS+ E +++R   P+A IF++  
Sbjct: 19  VKNNEPIMAVVKNNAYHYGLEFAVKTFLKADINTFSTTSLNEAIRVRKIAPEATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLIP---VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
            +P     ++D +L+    +  ++P L +Y K           L+ +   +R G      
Sbjct: 77  -NP-----VYDFDLVKRYDIHMTLPSLNYYYKYKQDLKGIHVHLEYENLLHRSGFRNIEE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER------FRTLIS---HY 189
           ++E L   H+  N+    +S I +H   AD+    V+  ++ER        TL++   H+
Sbjct: 131 IREVLK-DHDQNNQDKMIISGIWTHFGYADEFD--VDEYKMERDAWLNLINTLLNENYHF 187

Query: 190 KGIEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIIL 244
             I +  ++S      +L P  H    R GI+LYG      IN+    Q+ +T +  +I 
Sbjct: 188 DMIHSQNSASYFRENQMLLP--HHTHARVGIALYGSRPYSLINEERITQS-LTVKGNVIQ 244

Query: 245 IRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           +R    G+   Y    ++  D + +AV  IGY DG       L S       + GK +  
Sbjct: 245 VRDVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGI------LKSRAKHEAIINGKRY-- 296

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
               PI   + M     ++ D   +   D + ++  DI++D+
Sbjct: 297 ----PIRA-LMMSHMFIEVDD--EVHAQDEVILYNKDIRIDE 331


>gi|315605945|ref|ZP_07880976.1| D-alanine racemase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312227|gb|EFU60313.1| D-alanine racemase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 426

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 152/405 (37%), Gaps = 57/405 (14%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
            IDL A+ +N   + A +  A   A VK NAYG G   +A A   AG     V  + E  
Sbjct: 18  SIDLAAIGHNLKVLRAAAPGALQLATVKANAYGHGLIPVARAALEAGADWLGVAQLAEAF 77

Query: 70  KLRLYTPQARIF-----VLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHP 123
            LR     A +      +L  I                +S S   +  +    +  V  P
Sbjct: 78  ALREGLDAAGVAREDSPILAWISTSSSDFAAAIAADIDLSVSWTWVLAHICAAARQVGRP 137

Query: 124 YALQV--DTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
             + V  DTG +R G +L +          + +  L  +    SH++ ADDPS   N+  
Sbjct: 138 ARVHVKIDTGMSRAGSTLADLPTLAAALKAASDDGLIDVVGAWSHMSRADDPSDGGNAST 197

Query: 179 LERFRTL-----ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYG-GTDKINKS 229
               R       I    G+      LA++SGIL  P  H+ + R GI LYG   D    S
Sbjct: 198 ASHVRIFEEGLRILREAGVRPRIRHLAATSGILWHPQTHYDMVRVGIGLYGLSPDPAVAS 257

Query: 230 H------PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                  P  T+      + +I +   G  VSYGG         I +  +GY DG     
Sbjct: 258 AADLGLIPALTLCAPLTSVKVIEE---GSPVSYGGTWAAPTRRWIGLVPLGYGDGILRAA 314

Query: 284 SGLDS--EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-------------I 328
           S       H+ S  L           P++G++ MD  M D+  +                
Sbjct: 315 SNRARVLVHTASGPL---------SAPVVGRVCMDQFMIDLGKAAGDAGEATAHAGQPPA 365

Query: 329 EVGDYIQIF----GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            VGD + +     G +   D+ A A+ T NY+++ R+G    + Y
Sbjct: 366 RVGDEVILLGNGAGGEPLADEWADAADTINYEIVTRLGAHIPRTY 410


>gi|167624749|ref|YP_001675043.1| alanine racemase [Shewanella halifaxensis HAW-EB4]
 gi|167354771|gb|ABZ77384.1| alanine racemase [Shewanella halifaxensis HAW-EB4]
          Length = 406

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 138/344 (40%), Gaps = 32/344 (9%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++LT   +N   + N +  N +  A++K +AYG G   + P +    +    VTS EE
Sbjct: 44  LEVNLTQFDSNIKELKNHIQSNVKVCAIMKADAYGNGIAGLMPTVLANNIPCIGVTSNEE 103

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPY 124
              +R+         L  +       I DT   ++   +    Q T  S  M+  +  P 
Sbjct: 104 ---IRIVRDAGFRGSLIRVRSASIAEISDTLQYDVEEFVGDANQATLLSA-MAAKLDKPL 159

Query: 125 ALQV-----DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            + +       G N + +S Q  L+            +  I++H    D     V S   
Sbjct: 160 KVHLVLNSGGMGRNGVDVSTQSGLNEAVQIATTADLDVVGIMTHFPSYDRDDVLVKSKSF 219

Query: 180 ERFRTLISHYKGIEA-SLASSSG----ILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
                 I    G++  S+   SG     L  P  HF + RPG  LYG     N   P  +
Sbjct: 220 YNSALNIIEESGLKRDSVTIHSGNSYVALNVPEAHFDMVRPGGVLYG-DQPTNPEFP--S 276

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +VT + RI  +     G  V Y    KL R+SL+A   +GY+D +P  +           
Sbjct: 277 IVTFKTRIASLVDLPKGATVGYDSTIKLERESLLANLPVGYSDSFPRKMGNT-------- 328

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                  + G    ++G I+M+ +M D+TD   ++ GD + +FG
Sbjct: 329 ---ADVLVNGQRAKVMGVISMNTSMIDVTDLSGVKEGDEVVLFG 369


>gi|224476530|ref|YP_002634136.1| putative alanine racemase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421137|emb|CAL27951.1| putative alanine racemase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 358

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 155/356 (43%), Gaps = 52/356 (14%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY  G E    A   AG+  F  TS++E V++R   P+A IF++  
Sbjct: 19  VKANQNLMAVVKNNAYNYGLEFSVKAFQEAGINTFSTTSLKEAVRIRKIAPEATIFLMNA 78

Query: 86  IHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
           ++       F+T   N I +  ++P L +Y +           L+ +   +R GL     
Sbjct: 79  VYD------FETVRENEIHM--TLPSLAYYYEHKEDLEGVHVHLEFENLLHRSGLRSLDE 130

Query: 139 LQEAL-DFTHNSFNKKLGQLSLIISHLACADD---PSSH---------VNSVQLERFRTL 185
            +E L D   N  +KK+  +S I +H   AD+   P            V+S+  E ++  
Sbjct: 131 FKEVLKDHEQNKSDKKMI-ISGIWTHFGYADEFDVPEYEIEKEAWLNIVHSLLEEGYKFE 189

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARII 243
           + H +   A+    +  LL  + H    R GI+LYG     K+++    Q+ +T +  +I
Sbjct: 190 LIHAQN-SAAFYRENQQLLPEHTH---GRVGIALYGSRPYSKLSEKQIQQS-LTVKGNVI 244

Query: 244 LIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
            +R    GE   Y    ++ ++ + +AV  +GY DG   T     ++H  +        I
Sbjct: 245 QVRDVQKGEYCGYSFAYEVEQNHTKLAVVDVGYGDGVLRTR----AKHEAT--------I 292

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
            G   PI  K  M   MF   D  S+   D + ++  D+++D+        N + L
Sbjct: 293 NGKRYPI--KALMMSHMFVAVDD-SVTAEDEVILYNEDMRIDEYTFKGVGANSEQL 345


>gi|322386107|ref|ZP_08059744.1| alanine racemase [Streptococcus cristatus ATCC 51100]
 gi|321269876|gb|EFX52799.1| alanine racemase [Streptococcus cristatus ATCC 51100]
          Length = 368

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 35/374 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL+A+  N   + A +  + +  AVVK NAYG G   ++  +    V  F V++++E +
Sbjct: 13  IDLSAIAFNIEQIAAHIPQSVQKWAVVKANAYGHGAVPVSQHI-QPLVDGFCVSNIDEAL 71

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-----CGVSHPY 124
           +LR       I +L G+   +   +     I +  +V  L +  +L++      G++   
Sbjct: 72  ELREAGIAKSILIL-GVSSLEAVPLAIQQQITL--TVASLAWLEELLNQQADLTGLT--V 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++D+G  R+G    +      +        +  I +H A AD+  +     QL RF+ 
Sbjct: 127 HIKIDSGMGRIGFRDSQEAQQAISRLQAAGAVVEGIFTHFATADELDTSHFVAQLNRFKE 186

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAE 239
           ++S    +   +  ++S+  L          R G  +YG       ++  + ++  ++ E
Sbjct: 187 ILSELAFLPPVVHASNSATTLWHSETIMNAVRLGDIIYGLNPSGRVLDLPYEVKPALSLE 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++ +++  AG  V YG         +I    +GYADG+   + G D            
Sbjct: 247 SALVHVKEIQAGAHVGYGATYTSDSQQIIGTIPLGYADGWTRDMQGFDV----------- 295

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G   PI+G+++MD     +     +  G  + + G      I   DVA   GT NY
Sbjct: 296 -LIDGQRCPIVGRVSMDQITVRLPRVYPL--GTQVVLIGQSGAELITATDVAEKRGTINY 352

Query: 356 DLLVRIGTRYAKFY 369
           +++  I  R  + Y
Sbjct: 353 EVVCLISDRVPREY 366


>gi|229823671|ref|ZP_04449740.1| hypothetical protein GCWU000282_00972 [Catonella morbi ATCC 51271]
 gi|229786908|gb|EEP23022.1| hypothetical protein GCWU000282_00972 [Catonella morbi ATCC 51271]
          Length = 387

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 162/389 (41%), Gaps = 53/389 (13%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L A+++N   M   L  +    AVVK NAYG G   +A A   AG Q   V +V+EG+
Sbjct: 14  INLNAIQHNVREMKRHLEPDQALYAVVKANAYGHGAVAVAKAALAAGAQGLAVATVDEGI 73

Query: 70  KLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH------ 122
           +LR     A+  ++ G + P     +    L  ++S    L ++ +  +  VS+      
Sbjct: 74  ELRQAGLLAQPILILGLVDPRAIAELVYYRLTVIVSD---LIWFQEAWAQLVSNHQESLL 130

Query: 123 -----PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                   L +DTG  R+GL +++E   F              + +H + A         
Sbjct: 131 DDAKLKVHLALDTGMGRIGLRTVEEVQAFAEGIQVFPWVNWEGVDTHFSTAGGGDPAYVE 190

Query: 177 VQLERFRTLIS---------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
            Q  +++ L++         HY        S+ G+         + R GIS+YG   K  
Sbjct: 191 TQWAKWQELLTAVPDSVTVRHYAN------SAMGVWFKRQPVSSIERFGISMYGMHPKDE 244

Query: 228 KSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
           +S     +Q  +   + I+ +++   G  +SYG   +   D  +A   IGYADG+     
Sbjct: 245 RSSLPIDLQPALQLISEIVYVKQVEKGSKISYGASYEAQEDEWVATIPIGYADGW----- 299

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344
                H   + +     ++G+  P+LG I MD  M  +     + VG  + + G D  L+
Sbjct: 300 ---FRHYKDIPV----LVEGHACPVLGVINMDQLMIRLPH--QVPVGTTVTLIGQDHHLE 350

Query: 345 ----DVALASGTTNYDLLVRIGTRYAKFY 369
               D+A   GT +Y++   +  R  + Y
Sbjct: 351 NHAADLARLVGTISYEIFCGLSDRIPRIY 379


>gi|262165566|ref|ZP_06033303.1| alanine racemase [Vibrio mimicus VM223]
 gi|262025282|gb|EEY43950.1| alanine racemase [Vibrio mimicus VM223]
          Length = 363

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 152/375 (40%), Gaps = 55/375 (14%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I L   ++N     + ++ + +  A++K +AYG G   + P +   G+    V S  E
Sbjct: 1   MEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNAE 60

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +     G+   + D N+  +I +  Q    ++L      +   ++
Sbjct: 61  ARAVRESGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAMELAELAK---KNGKTVK 117

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  +D T  +  K+          ++ A  PS       +H  +   +
Sbjct: 118 VHMALNDGGMG-RNGIDMTTEAGKKEA---------VSIATQPSLNIVGIMTHFPNYDAD 167

Query: 181 RFRTLISHYKGIEASL---------------ASSSGILLGPNYHFQLTRPGISLYGGTDK 225
             RT ++ +K   A L               A+S   L  P     + RPG  LYG    
Sbjct: 168 EVRTKLASFKQHSAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDL-P 226

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            N  +P  ++V+ + R+  + +   G  V Y      +RDS++A   +GY+DGYP     
Sbjct: 227 TNPEYP--SIVSFKTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK--- 281

Query: 286 LDSEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
                     +G K    I G    ++G  +M+ TM D+TD   +  G  + +FG   K 
Sbjct: 282 ----------MGNKAEVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQ-KN 330

Query: 344 DDVALASGTTNYDLL 358
             +A++    N +L+
Sbjct: 331 QSIAVSEMENNAELI 345


>gi|27467997|ref|NP_764634.1| putative alanine racemase [Staphylococcus epidermidis ATCC 12228]
 gi|293366638|ref|ZP_06613315.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315542|gb|AAO04676.1|AE016747_173 putative alanine racemase [Staphylococcus epidermidis ATCC 12228]
 gi|291319407|gb|EFE59776.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736963|gb|EGG73220.1| putative alanine racemase [Staphylococcus epidermidis VCU045]
          Length = 357

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 147/342 (42%), Gaps = 51/342 (14%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY  G E        A +  F  TS+ E +++R   P+A IF++  
Sbjct: 19  VKNNEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIRVRKIAPEATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLIP---VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
            +P     ++D +L+    +  ++P L +Y K           L+ +   +R G      
Sbjct: 77  -NP-----VYDFDLVKRYDIHMTLPSLNYYYKYKQDLKGIHVHLEYENLLHRSGFRNIEE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER------FRTLIS---HY 189
           ++E L   H+  N+    +S I +H   AD+    V+  ++ER        TL++   H+
Sbjct: 131 IREVLK-DHDQNNQDKMIISGIWTHFGYADEFD--VDEYKMERDAWLNLINTLLNENYHF 187

Query: 190 KGIEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIIL 244
             I +  ++S      +L P  H    R GI+LYG      IN+    Q+ +T +  +I 
Sbjct: 188 DMIHSQNSASYFRENQMLLP--HHTHARVGIALYGSRPYSLINEERITQS-LTVKGNVIQ 244

Query: 245 IRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           +R    G+   Y    ++  D + +AV  IGY DG       L S       + GK +  
Sbjct: 245 VRDVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGI------LKSRAKHEAIINGKRY-- 296

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
               PI   + M     ++ D   +   D + ++  DI++D+
Sbjct: 297 ----PIRA-LMMSHMFIEVDD--EVHAQDEVILYNKDIRIDE 331


>gi|54303604|ref|YP_133597.1| alanine racemase [Photobacterium profundum SS9]
 gi|46917035|emb|CAG23797.1| putative alanine racemase [Photobacterium profundum SS9]
          Length = 405

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 152/359 (42%), Gaps = 50/359 (13%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  ++ L   K+N     + +  + +  AV+K +AYG G   + P +    +   
Sbjct: 38  QSNSWL--EVSLGQFKSNIEQFKSHIKADTKICAVMKADAYGNGIFGLMPTILEQQIPCV 95

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            + S  E   +R    + ++  +     G+ K   D N+  +I S  Q  F ++L   GV
Sbjct: 96  AIASNAEARAVRESGFKGQLLRVRSASLGEIKQSLDLNIEELIGSHQQAKFIAEL---GV 152

Query: 121 SHPYALQV-----DTGFNRLGLSLQ------EALDFTHNSFNKKLGQLSLIISHLACADD 169
                + V     D G  R G+ +       EALD    +    +G    I++H      
Sbjct: 153 ERNQKINVHLALNDGGMGRNGIDMSTEQGKAEALDIATQANLNIVG----IMTHF----- 203

Query: 170 PSSHVNSV--QLERFRT----LISH--YKGIEASL--ASSSGILLGPNYHFQLTRPGISL 219
           P+ + + V  +L+ F+T    LI     K  E +L  A+S   +  P     + RPG  L
Sbjct: 204 PNYNADKVRVKLKDFQTNSSWLIKQADLKRDELTLHVANSYVSINVPEAQLDMVRPGGVL 263

Query: 220 YGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
           YG     N  +P  ++V+ + RI  I +  A + V Y       RDS++A   +GY+DGY
Sbjct: 264 YGDL-PTNPEYP--SIVSFKTRIASIHQLPASQTVGYDSTYITKRDSVLANLPVGYSDGY 320

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           P  +                  I G    ++G  +M+ ++ DITD   ++ G  + +FG
Sbjct: 321 PRRMGN-----------QADVIINGQRAKVVGVTSMNTSIVDITDIKGVKQGQEVTLFG 368


>gi|222151301|ref|YP_002560457.1| alanine racemase 2 [Macrococcus caseolyticus JCSC5402]
 gi|222120426|dbj|BAH17761.1| alanine racemase 2 [Macrococcus caseolyticus JCSC5402]
          Length = 360

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 144/349 (41%), Gaps = 35/349 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +D T    N   + ++  N    AVVK+NAY  G E    A   AG+  F  T++ E
Sbjct: 4   RWTVDRTKFIEN---VKSVIDNTPVMAVVKNNAYHYGLEFAIDAFLQAGITTFSTTNLNE 60

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + +R   P+A IF++  +    +   ++  +     ++P L FY +  S        L+
Sbjct: 61  AILIRKIAPEATIFLMNPVTRFNDLRQYNIQM-----TLPSLAFYHRYQSELDGISVHLE 115

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL----IISHLACADDPSSHVNSVQLERF- 182
            +   +R G    E +    +  N+    L +    I +H   AD+       ++ E + 
Sbjct: 116 YENLLHRSGFKTFEEMKTVIDDNNQLPVHLQMNINGIWTHFGYADEFDVIEYEIEKESWL 175

Query: 183 --RTLISHYKGIEASLASSSGILLGPNYHFQLT--RPGISLYGGT--DKINKSHPMQTVV 236
                IS Y   E   + +S   +      + T  R GI LYG      +++S   Q+ +
Sbjct: 176 KGLKWISRYHTFEMIHSQNSASFIRDKIFDEHTHVRIGIILYGSRPYASLDESVTHQS-L 234

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  A +I +R    GE   Y       +++ +AV  IGY DG   T S  D         
Sbjct: 235 TVSANVIQVRNISKGESAGYSFAFTAEKETKLAVVDIGYGDGILRTRSKHDC-------- 286

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                IKG   PI  +  M   MF   D+ ++E  D + ++  +I++D+
Sbjct: 287 ----IIKGRRYPI--RALMMSHMFVEVDN-TVEAEDEVILYSDEIRIDE 328


>gi|224438031|ref|ZP_03658970.1| alanine racemase [Helicobacter cinaedi CCUG 18818]
 gi|313144476|ref|ZP_07806669.1| alanine racemase [Helicobacter cinaedi CCUG 18818]
 gi|313129507|gb|EFR47124.1| alanine racemase [Helicobacter cinaedi CCUG 18818]
          Length = 348

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 124/287 (43%), Gaps = 35/287 (12%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           K +L  + ++ +S N    N   AAV+KDNAYG G +++A      G++  FV +  E +
Sbjct: 12  KHNLNLIHSHINSHN--KSNVEIAAVLKDNAYGHGLKEMATIAAEYGIKSVFVKNYNEAI 69

Query: 70  KLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++  + PQ   F  YG+  G   + I F  +    IS++PQ T               L+
Sbjct: 70  QIYKFFPQVTAF--YGMPQGDFAKNIAFVIHDEKHISALPQGT------------KVELK 115

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-----HVNSVQLERF 182
           V+ G NR G+   E   F      KKL +L  + SH    DD  S       N  +L++ 
Sbjct: 116 VNVGMNRNGIEPSELESFIQAILQKKL-ELIGVFSHNGYGDDLDSVFFHTQSNFAKLKQE 174

Query: 183 RTLISHYKGIEA----SLASSSGILLGPNYHF--QLTRPGISLYGGTDKINKSHP----M 232
              +S   G       SL++S  I +         L R GI  YG  D ++  +P    +
Sbjct: 175 VLHLSQKYGFAPPRFHSLSTSGAIRVASEGGITDDLVRIGIGAYGYLD-VSFENPISDKL 233

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
           Q V +  A  +  R    GE + Y G   L    +++   IGY DG+
Sbjct: 234 QKVASLYADRVSTRFLDKGERIGYSGCTTLNSPQVVSTYDIGYGDGF 280


>gi|227356137|ref|ZP_03840526.1| alanine racemase [Proteus mirabilis ATCC 29906]
 gi|227163601|gb|EEI48517.1| alanine racemase [Proteus mirabilis ATCC 29906]
          Length = 407

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 143/349 (40%), Gaps = 42/349 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I  +AL  N   + +L G   +  AV+K +AYG     +AP +    V+   VT+ +E
Sbjct: 45  IEISRSALDFNVKKVQSLLGKQSSLCAVLKGDAYGHDLSLVAPIMIENNVKCIGVTNNQE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             ++R    + R   L  +    E+ +       V   +  L    +L +        + 
Sbjct: 105 LKEVRDLGFKGR---LMRVRNATEQEMAQATNYNVEELIGDLDMAKRLDAIAKQQNKVIP 161

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSHVNSVQ- 178
           +    N  G+S +  L+  + S  +K  Q+S         I+SH      P    N V+ 
Sbjct: 162 IHLALNSGGMS-RNGLEVDNKSGLEKAKQISQLANLKVVGIMSHY-----PEEDANKVRE 215

Query: 179 -LERFRTL---ISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
            L RF+     +    G+E +     +A++   +  P     + R G   YG T     S
Sbjct: 216 DLARFKQQSQQVLEVMGLERNNVTLHMANTFATITVPESWLDMVRVGGIFYGDTIA---S 272

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              + V+T ++ I  I     G  V Y     L RDS++A   +GYADGY    S     
Sbjct: 273 TDYKRVMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN---- 328

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                   G   I G  VP+LGK +M+  + DIT   +I+ GD +  FG
Sbjct: 329 -------AGHALIAGQRVPVLGKTSMNTVIVDITSLNNIKPGDEVVFFG 370


>gi|160941188|ref|ZP_02088525.1| hypothetical protein CLOBOL_06081 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435749|gb|EDP13516.1| hypothetical protein CLOBOL_06081 [Clostridium bolteae ATCC
           BAA-613]
          Length = 392

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 154/379 (40%), Gaps = 34/379 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L  +++N+ +   + G + +    VK NAYG G       L   G     + S+ E
Sbjct: 12  LEISLDNVRDNFFAFKKMVGPDVKVMPAVKANAYGHGIVPCGKELEACGADYLGMGSISE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            +KLR    +  + V +  +  +E  ++    +LIP I S  +    S   S  V  P  
Sbjct: 72  AIKLRENGVKMPLLV-FASNTIEEVAELYIQYHLIPTILSEREAKAISDAASSPV--PVF 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP--SSHVNSVQLERFR 183
           +++DTG  RLG++ +E  DF           +  + SH+A  + P  S+     Q ERF 
Sbjct: 129 VKIDTGRGRLGVNAEEFPDFYRKITALPNLYVEGVYSHMAAVNWPDVSAEYGLWQYERFS 188

Query: 184 TLIS----HYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPM--QT 234
             I       K I    LA++ G +  P        PG +++G +  D+  + HP     
Sbjct: 189 AAIEVLGEEGKKIPFCQLANTPGGIALPEIRMTGVCPGRAIWGYSPLDR-REGHPQLKHP 247

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +   ++R+I I +   G+        KL     I + A G  DG    L+G         
Sbjct: 248 ITAWKSRLIHINQVCGGKFGENYKAVKLDSPKRIGIMAGGLGDGISPKLAG--------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   + G    +   I+++ T+ D+ D    +VGD I I G     +I ++      
Sbjct: 299 ---GYVLLHGRKAKVASTISLEHTIIDLADFPDAKVGDEIVILGRQGDEEITMEQRMEEW 355

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           G       + I +  A+ Y
Sbjct: 356 GRGVPSFWIEISSHTARCY 374


>gi|69250348|ref|ZP_00605138.1| Alanine racemase [Enterococcus faecium DO]
 gi|68193971|gb|EAN08535.1| Alanine racemase [Enterococcus faecium DO]
          Length = 300

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 30/257 (11%)

Query: 126 LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           L+ DTG  R+G      ++EA  F   S   ++ +   + +H + AD       ++Q ER
Sbjct: 59  LKADTGMGRIGFCTPEEVKEAAAFIKES---RVLEWEGLFTHFSTADQADDTYWNLQKER 115

Query: 182 FRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTVV 236
           F  ++     +     +++S+  L        + R G+++YG       + + +P+Q  +
Sbjct: 116 FIEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPAL 175

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              + +I ++K  AGE + YG          I    IGYADG+P  + G           
Sbjct: 176 ELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWPRKMQGFSL-------- 227

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
                ++G     +G++ MD  M  +       VG  + + G     +I + D+A   GT
Sbjct: 228 ----LVEGNYCETIGRVCMDQLMIRLPQEFP--VGTKVTLIGKNADKEITMQDIADQLGT 281

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y++   +G R  + Y
Sbjct: 282 IHYEVACGLGQRIPREY 298


>gi|329729391|gb|EGG65797.1| putative alanine racemase [Staphylococcus epidermidis VCU144]
          Length = 357

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 51/355 (14%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY  G E        A +  F  TS+ E +++R   P+A IF++  
Sbjct: 19  VKNNEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIRVRKIAPEATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLIP---VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----S 138
            +P     ++D +L+    +  ++P L +Y K           L+ +   +R G      
Sbjct: 77  -NP-----VYDFDLVKRYDIHMTLPSLNYYYKYKQDLKGIHVHLEYENLLHRSGFRNIEE 130

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER------FRTLIS---HY 189
           ++E L   H+  N+    +S I +H   AD+    V+  ++ER        TL++   H+
Sbjct: 131 IREVLK-DHDQNNQDKMIISGIWTHFGYADEFD--VDEYKMERDAWLNLINTLLNENYHF 187

Query: 190 KGIEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIIL 244
             I +  ++S      +L P  H    R GI+LYG      IN+    Q+ +T +  +I 
Sbjct: 188 DMIHSQNSASYFRENQMLLP--HHTHARVGIALYGSRPYSLINEERITQS-LTVKGNVIQ 244

Query: 245 IRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           +R    G+   Y    ++  D + +AV  IGY DG       L S       + GK +  
Sbjct: 245 VRYVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGI------LKSRAKHEAIINGKRY-- 296

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
               PI   + M     ++ D   +   D + ++  DI++D+        N + L
Sbjct: 297 ----PIRA-LMMSHMFIEVDD--EVHAQDEVILYNKDIRIDEFTFKGVGANSEQL 344


>gi|223933704|ref|ZP_03625679.1| alanine racemase [Streptococcus suis 89/1591]
 gi|302024422|ref|ZP_07249633.1| alanine racemase [Streptococcus suis 05HAS68]
 gi|330833424|ref|YP_004402249.1| alanine racemase [Streptococcus suis ST3]
 gi|223897620|gb|EEF64006.1| alanine racemase [Streptococcus suis 89/1591]
 gi|329307647|gb|AEB82063.1| alanine racemase [Streptococcus suis ST3]
          Length = 367

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 159/375 (42%), Gaps = 31/375 (8%)

Query: 8   RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++++L A+  N+   M  L       AVVK NAYG G   +A  L ++    F V++++
Sbjct: 10  QIRVNLDAIAENFEQVMTNLPHKTEAFAVVKANAYGHGAVAVAKKL-SSQAAGFCVSNLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR    +  I +L G+ P +   +    N+   ++S+  L     L +        
Sbjct: 69  EALELRKAGIEHPILIL-GVVPVRFLPVAHQLNISVTVASLDWLQDAKDLEADLSGLTVH 127

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++DTG  R+G      L        +    +  + +H A AD+        QL  F+  
Sbjct: 128 LKLDTGMGRIGFRKIADLLQAIAILEELEYDIEGVYTHFATADEVDQAHFEYQLSIFKEF 187

Query: 186 ISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTA 238
           +       + I AS +++S  +   +  F L R G  LYG       +     +Q  ++ 
Sbjct: 188 LDVLPITPRWIHASNSATS--IWHADTVFNLVRLGNILYGLNPSGRVLELPFDVQPALSL 245

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + I+ +++   G  + YG          IA   IGYADG   +L GL      SV + G
Sbjct: 246 VSEIVHVKQVETGTTIGYGATYHSADSEWIATVPIGYADGLVRSLQGL------SVLVDG 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +         I+G+I+MD     +  +  +  G  + + G D    I + + A   GT N
Sbjct: 300 QA------CEIVGRISMDQITIRLPHAYPL--GQKVTLIGQDGDKTISVQEWADCIGTIN 351

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  +  R  + +
Sbjct: 352 YEVVCLLTDRLPRIF 366


>gi|291277443|ref|YP_003517215.1| alanine racemase [Helicobacter mustelae 12198]
 gi|290964637|emb|CBG40491.1| alanine racemase [Helicobacter mustelae 12198]
          Length = 342

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 129/322 (40%), Gaps = 39/322 (12%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ ID    KNN   + + L    + A V+KDNAYG G E++A   +N G++  FV +  
Sbjct: 3   QILIDSQKYKNNLDLITSHLHDKTKLAIVLKDNAYGHGLEEMAHLSHNYGIKSVFVKNES 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E  K+        IF  YGI P         NL PVI S   L   +    C V     L
Sbjct: 63  EARKIEHLFEHITIF--YGI-PSSP---LPPNLHPVIHSNQNLDLLAS--PCSVE----L 110

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +++ G NR G++ +E          K LG L  + +H    DD      + Q + F+ + 
Sbjct: 111 KINIGMNRNGIAPRELESMITKILQKDLG-LFGVFAHNGYGDDLMEDFQNGQ-QIFQEIK 168

Query: 187 SHYKGIEASLA---------SSSGILLGPNYHFQLTRPGISLY---GGTDKINKSHPMQT 234
                +   L          +SSG L    +   L R G++ Y   G    +  +  +Q 
Sbjct: 169 EQTLYLSQKLGFPRPRFHSLNSSGTLRSREFPDDLVRIGMAAYGYCGANFPLEIADRLQP 228

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           + +  A  I       G  + Y G   L  DS ++   IGY DG    L   D    P  
Sbjct: 229 IASLWADKICTHYLPKGAKIGYSGMSVLQEDSFVSTYDIGYGDG----LFRFDGTQPP-- 282

Query: 295 FLGGKGFIKGYMVPILGKITMD 316
           +    GF+      IL K +MD
Sbjct: 283 YFSADGFL------ILPKTSMD 298


>gi|260778604|ref|ZP_05887496.1| alanine racemase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604768|gb|EEX31063.1| alanine racemase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 405

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 140/348 (40%), Gaps = 42/348 (12%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L   K N     + LS   +   V+K +AYG G   + P +    V    + S  E
Sbjct: 45  LEISLGQFKQNMALFRSHLSSQTKLCVVMKADAYGNGIRGLMPTILELNVPCIAIASNAE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    + ++  +      + +   D ++  +I S+ Q      L +      +   
Sbjct: 105 ARTVRDSGFEGQLVRVRSADIQEIEQAMDLDIEELIGSLEQANQIKSLSTDKTIKVHLAL 164

Query: 128 VDTGFNRLGLSL------QEALDFTHNSFNKKLGQLS--------LIISHLACADDPSSH 173
            D G +R G+ +      QEALD   +     +G ++         + S LA  +  S+ 
Sbjct: 165 NDGGMSRNGIDMSTEKGKQEALDIAKHQGIDIVGIMTHFPNYDADEVRSKLADFNQSSAW 224

Query: 174 -VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
            + +  L R   L+         +++S   L  P     + RPG  LYG     N  +P 
Sbjct: 225 LIENANLNRDDVLLH--------VSNSYTALNVPEAQLDMVRPGGVLYGDL-PTNPEYP- 274

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            ++V+ + R+  +    A   V Y       RDS++A   +GY+DGYP            
Sbjct: 275 -SIVSFKTRVASLHNVPANSTVGYDSSYVTKRDSVLANLPVGYSDGYPRK---------- 323

Query: 293 SVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
              +G +    + G   P++GK +M+ TM D+TD   +  G  + +FG
Sbjct: 324 ---MGNRAHVIVNGQRAPVVGKTSMNTTMVDVTDVKGVITGQEVTLFG 368


>gi|291562623|emb|CBL41439.1| alanine racemase [butyrate-producing bacterium SS3/4]
          Length = 403

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 158/389 (40%), Gaps = 41/389 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVE 66
           RL+I+L+ +  N   + A +G      VVK NAYG G   +A  L    G++   V  + 
Sbjct: 9   RLEINLSRIGRNIDKIRAYTGGLGLIPVVKSNAYGYGTAAVANFLVRRCGIRFLAVARLF 68

Query: 67  EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPY 124
           E  +++    P   I +L  +   Q   I    + IP+           +    G++   
Sbjct: 69  EACQIQDSGCPDCGILILGPVPAFQIPTIVKRKIEIPLFRVEDAKRLSEEAKKQGLASVK 128

Query: 125 A-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPS----SHVNSV 177
           A ++++TG NR+G    + L    +   K LG + +  + +H A AD  +    +     
Sbjct: 129 AHIKIETGMNRIGARPGKELSDLLSCI-KGLGNIEIDGVFTHFATADQANEGKGNDFTRE 187

Query: 178 QLERFRTLISHYKGIEASLA--------SSSGILLGPNYHFQLTRPGISLYGGTDKI-NK 228
           Q  RF   +S  +  EA +         + +   L   Y         SLY G   I N 
Sbjct: 188 QFSRFLEGLSQIR--EAGITPRYVHCCNTGATAWLKEAYSVCTHVRTGSLYLGYSSIQND 245

Query: 229 SHPMQTVVTAEAR--IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            +P+    +   +  I+ IR+ + GE V YG        + +AV  IGY DGY  + +  
Sbjct: 246 WNPIGVEESGSWKTMIVNIREIVPGESVGYGRTFMPDHPAKVAVIGIGYGDGYTRSFA-- 303

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD-- 344
                     G    I G     +G   MDM+  D+TD +  ++GD + +FG D K +  
Sbjct: 304 --------VSGAPALINGVRCRFVG-TCMDMSFLDVTD-VDCKIGDEVTLFGEDGKGNRI 353

Query: 345 ---DVALASGTTNYDLLVRIGTRYAKFYT 370
              ++    G T   +   I  R A+ Y+
Sbjct: 354 SGLEIGHLMGETRLAMFSHITERAARTYS 382


>gi|255024672|ref|ZP_05296658.1| alanine racemase [Listeria monocytogenes FSL J1-208]
          Length = 204

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 24/216 (11%)

Query: 164 LACADDPSSHVNSVQLERFRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYG 221
            A AD   +     QL +F+T+++  K       +A+S+  LL P   F   R GIS+YG
Sbjct: 1   FATADQLETSYFEQQLAKFQTILTSLKNRPTYVHVANSAASLLQPQIGFDAIRFGISMYG 60

Query: 222 GT--DKINKSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
            T   +I  S P  ++  +     ++ +++   G+ VSYG     T    +A   IGYAD
Sbjct: 61  LTPSTEIKTSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYAD 120

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           G     SG                + G   PI+G++ MD T+  +      + G  + I 
Sbjct: 121 GLIRHYSGFHV------------LVDGEFAPIIGRVCMDQTIIKLPREF--QTGSKVTII 166

Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G D    I  DD A    T NY++   +  R  + Y
Sbjct: 167 GEDHGNVITADDAAHYLDTINYEVTCLLNERIPRKY 202


>gi|223999109|ref|XP_002289227.1| alanine racemase [Thalassiosira pseudonana CCMP1335]
 gi|220974435|gb|EED92764.1| alanine racemase [Thalassiosira pseudonana CCMP1335]
          Length = 388

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 135/338 (39%), Gaps = 54/338 (15%)

Query: 37  KDNAYGLGCEKIAPALYN-AGVQDFFVTSVEEGVKLR-----------LYTPQARIFVLY 84
           K + YG G    A  L    G + F V ++EEGV LR           L   + R  V  
Sbjct: 29  KADGYGHGAVMTACHLVERCGAEAFAVATLEEGVALRRALEERFPPSSLAPRRKRAEVER 88

Query: 85  GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALD 144
                +E+++ D   I ++     L  Y           +   VD+G  RLG    +   
Sbjct: 89  VAERRKEELMGDQRKIHIL-----LRSYHHSAESTWKCWWHSLVDSGMGRLGFKTDQISA 143

Query: 145 FTHNSFNKKLGQLSL----IISHLACADDPSSHVNSVQLERFRTLISHYKGI-------- 192
             +   +     L +    + +H+A A+  S++ +S Q++RFR+L+   +          
Sbjct: 144 DGNTPLSSPTPSLEMPFYGMCTHMADANSTSTYTHS-QMDRFRSLLHRVRSAGVAVPTIS 202

Query: 193 ---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249
               A+L ++S     PN      R G ++YG      +   + T+      + +I +  
Sbjct: 203 TDNSAALLTTSLTHFDPNAILGFVRCGGAIYGQRPAFKELRAVSTLTATVKHVAVISE-- 260

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-SGLDSEHSPSVFLGGKGFIKGYMVP 308
            GE V Y        D  IA   +G+ADGYP  L +G+           G+  I+G   P
Sbjct: 261 -GESVGYDRAYVAPMDVRIATLTVGFADGYPRELGNGV-----------GRVSIRGSTFP 308

Query: 309 ILGKITMDMTMFDITDS------LSIEVGDYIQIFGPD 340
           + G + MDM M ++  +        + VGD   ++GP+
Sbjct: 309 VAGNVCMDMLMVELGPAEDEGAGAHVTVGDIAVLWGPE 346


>gi|319401318|gb|EFV89529.1| putative alanine racemase [Staphylococcus epidermidis FRI909]
          Length = 357

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 145/341 (42%), Gaps = 49/341 (14%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY  G E        A +  F  TS+ E +++R   P+A IF++  
Sbjct: 19  VKNNEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIQVRKIAPEATIFLM-- 76

Query: 86  IHPGQEKIIFDTNLIP---VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142
            +P     ++D +L+    +  ++P L +Y K           L+ +   +R G    E 
Sbjct: 77  -NP-----VYDFDLVKRYDIHMTLPSLNYYYKYKQDLKGIHVHLEYENLLHRSGFRNIEE 130

Query: 143 LDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER------FRTLIS---HYK 190
           +      H+  N+    +S I +H   AD+    V+  ++ER        TL++   H+ 
Sbjct: 131 IRKVLKDHDQNNQDKMIISGIWTHFGYADEFD--VDEYKMERDAWLNLINTLLNENYHFD 188

Query: 191 GIEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILI 245
            I +  ++S      +L P  H    R GI+LYG      IN+    Q+ +T +  +I +
Sbjct: 189 MIHSQNSASYFRENQMLLP--HHTHARVGIALYGSRPYSLINEERITQS-LTVKGNVIQV 245

Query: 246 RKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           R    G+   Y    ++  D + +AV  IGY DG       L S       + GK +   
Sbjct: 246 RDVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGI------LKSRAKHEAIINGKRY--- 296

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
              PI   + M     ++ D   +   D + ++  DI++D+
Sbjct: 297 ---PIRA-LMMSHMFIEVDD--EVHAQDEVILYNKDIRIDE 331


>gi|242373698|ref|ZP_04819272.1| alanine racemase 2 [Staphylococcus epidermidis M23864:W1]
 gi|242348666|gb|EES40268.1| alanine racemase 2 [Staphylococcus epidermidis M23864:W1]
          Length = 358

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 146/343 (42%), Gaps = 42/343 (12%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK+NAY  G E        AG+  F  TS++E V++R   P A IF++  ++      
Sbjct: 27  AVVKNNAYHYGLEFAVKQFLKAGINTFSTTSLKEAVRVREIAPHATIFLMNAVYD----- 81

Query: 94  IFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQEALDFTHN 148
            FDT     +  ++P L +Y +           L+ +   +R G      L E L+    
Sbjct: 82  -FDTVREYQIHMTLPSLVYYYEYKEDLKGIHVHLEFENLLHRSGFKNLDELHEVLEDHAQ 140

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----RTLISH---YKGIEASLASS-- 199
           + N +   +S + +H   AD+       ++ E +     TL+     ++ I A  ++S  
Sbjct: 141 NDNSEKMIISGLWTHFGYADEFDVPEYGIEREAWLNVLNTLLEEGYTFEMIHAQNSASYY 200

Query: 200 -SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELVSY 256
             G  + P YH    R GI+LYG     K++ S   Q+ +T +  +I  R+  AG+   Y
Sbjct: 201 REGQQVLP-YHTH-ARVGIALYGSRPYRKLDTSRIQQS-LTVKGNVIQTREVNAGDYCGY 257

Query: 257 GGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
               + T+D + +AV  +GY DG       L S       + GK +      PI   + M
Sbjct: 258 SFAFEATKDHTRLAVVDVGYGDGI------LKSRARHEAMINGKRY------PIRA-LMM 304

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
                ++ D   +   D + ++  DI++D+        N + L
Sbjct: 305 SHMFVEVDD--EVHAQDEVVLYNNDIRIDEFTFKGVGANSEQL 345


>gi|91224603|ref|ZP_01259864.1| alanine racemase [Vibrio alginolyticus 12G01]
 gi|91190491|gb|EAS76759.1| alanine racemase [Vibrio alginolyticus 12G01]
          Length = 409

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 141/348 (40%), Gaps = 40/348 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L   ++N     + + G  +  AV+K +AYG G   + P +    +    V S  E
Sbjct: 47  LEINLGQFRDNIEQFKSHMDGKTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAVASNAE 106

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
              +R    + ++  +     G+ + + D N+  +I +  Q    SKL    G      L
Sbjct: 107 AQTVRDSGFKGQLMRVRSADIGEIEAVIDLNVEELIGTAEQAKALSKLAEKAGKEIKVHL 166

Query: 127 QV-DTGFNRLGLSL------QEALDFTHNSFNKKLGQLSL--------IISHLACADDPS 171
            + D G  R G+ +      +EAL+    +    +G ++         +   LA   D S
Sbjct: 167 ALNDGGMGRNGVDMTTEAGKKEALEIAQQAGVNIVGIMTHFPNYNADDVRQKLASFKDSS 226

Query: 172 SH-VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           +  +    L+R   L+         +A+S   L  P     + RPG  LYG     N  +
Sbjct: 227 AWLIKEANLKRDNILLH--------VANSYTALNVPEAQLDMVRPGGVLYGDL-PTNPEY 277

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P  ++V+ + R+  +        V Y      +++SL+A   +GY+DGYP  +       
Sbjct: 278 P--SIVSFKTRVASVHHLPKNSTVGYDSSYTTSKESLMANIPVGYSDGYPRKMGNT---- 331

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                   +  I G    + G  +M+ TM D+T    +E G  + +FG
Sbjct: 332 -------AEVLINGQRAKVAGVASMNTTMVDVTGIKDVEPGSEVVLFG 372


>gi|116617542|ref|YP_817913.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096389|gb|ABJ61540.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 373

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 152/343 (44%), Gaps = 44/343 (12%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71
           +L  +K N H+   +       AV+K NA+  G  ++A     AG   F +  ++E + L
Sbjct: 22  NLKVIKENTHAKEIM-------AVLKANAFSHGLPEMASLSITAGATRFGMAMLDEALIL 74

Query: 72  RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDT 130
           R       I VL    P   ++  + N+    S+   +   + +L   G++   +L VDT
Sbjct: 75  RDLGYIQPIDVLGLTDPRYARLAAERNITLAFSTKESIKAAAEQLAGTGLTLKVSLPVDT 134

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLII----SHLACADDPSSHVNSVQLERFRTLI 186
           G NR+G   +E L     +  +   Q +LI     +H A AD P+      Q+  ++ L 
Sbjct: 135 GLNRIGFKSREDLV---AAIQEVSAQDTLIFQSMWTHFATADTPNVDYVDFQISEWQRL- 190

Query: 187 SHYKGIEASLASSSGILLGPNY----HFQLTRPGISLYGGTDKINKSHPMQTV------- 235
           +H   +E +    +   +   Y    +  + R GI L+G    IN S P+ ++       
Sbjct: 191 THDLPVEPNEKHFANTGIATWYPEKINTDIVRLGIGLFG----INGSVPIMSMPFELIPA 246

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ +A+++  +    G+ V YG +     D  +    IG++DGYP   SG+ +       
Sbjct: 247 LSLKAKVVNSKPLKKGDAVGYGAEYHAPNDGYLITIPIGHSDGYPFNGSGMRA------- 299

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           L   G I G+   I+G + MD +M  +T+ ++  VG  + + G
Sbjct: 300 LVADGQI-GH---IVGGVAMDQSMILVTNPVA--VGTTVTLIG 336


>gi|325568405|ref|ZP_08144772.1| alanine racemase [Enterococcus casseliflavus ATCC 12755]
 gi|325158174|gb|EGC70327.1| alanine racemase [Enterococcus casseliflavus ATCC 12755]
          Length = 386

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 156/381 (40%), Gaps = 38/381 (9%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ ID TA+  N  +  A L       AVVK N YG G  + A A    G   F V +++
Sbjct: 23  KVIIDTTAITENIKNEIAHLPSETFLFAVVKANGYGHGAVQTAQAAKEGGAAGFCVATID 82

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR       + +L  ++     ++ + +   PV S    +   + L    +  P  
Sbjct: 83  EAIELREAGITDPLLILGVVNVQDIPLLAEYDFSFPVASMDWLVEAGTYLEENPIKTPLK 142

Query: 126 --LQVDTGFNRLG-LSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
             ++VDTG  R+G L+ +E L       TH +F+        I +H + AD   +     
Sbjct: 143 VHVKVDTGMGRIGFLTPEEVLQAVLWLETHPTFD-----WEGIFTHFSTADQADTTYWET 197

Query: 178 QLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPM 232
           Q +RF+ +++   Y        +S+  L        + R GI++YG       + +   +
Sbjct: 198 QHQRFKEVLTVLPYLPTYIHTGNSATSLWHKEAVGNMVRFGIAMYGLNPSGHALKEPFSL 257

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  + +I ++    G  + YG          I    IGYADG+   + G       
Sbjct: 258 KPALSLVSELIQVKLLEKGAGIGYGETYITPHQEWIGTVPIGYADGWLRKMQGFSL---- 313

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                    ++G    I+G++ MD  M  +  + +  VG  + + G +    I + DVA 
Sbjct: 314 --------LVEGEPCEIVGRVCMDQLMIRLPRAFA--VGTTVTLIGENHGKRITMQDVAD 363

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T +Y++   +  R  + Y
Sbjct: 364 QLETIHYEVACTLSARVPREY 384


>gi|315658301|ref|ZP_07911173.1| alanine racemase [Staphylococcus lugdunensis M23590]
 gi|315496630|gb|EFU84953.1| alanine racemase [Staphylococcus lugdunensis M23590]
          Length = 358

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 143/339 (42%), Gaps = 44/339 (12%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY  G E        AG+  F  TS++E V++R   P+A IF++  
Sbjct: 19  VKNNQPIMAVVKNNAYHYGLEYAVNMFLKAGINTFSTTSLKEAVRIRKLAPKATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFY----SKLMSCGVSHPYA-LQVDTGFNRLGLSLQ 140
           ++      I   N I +  ++P L +Y    S L    V   Y  L   +GF  L   L+
Sbjct: 79  VYDFD---IVRHNRIHM--TLPSLQYYYANKSNLYDINVHLEYENLLHRSGFKNLS-ELR 132

Query: 141 EAL-DFTHNSFNKKLGQLSLIISHLACADD---PSSHVNS-VQLERFRTLISH------- 188
           E L D   N+   K+  ++ + +H   AD+   P         L+   TL++        
Sbjct: 133 EVLKDHAQNNQPHKM-HITGLWTHFGYADEFDVPEYDTEKRAWLKVLNTLLAEGYTFDMI 191

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEARIILIRK 247
           +    AS       +L  + H    R GI+LYG     + K   ++  +T +A +I +R+
Sbjct: 192 HAQNSASFYREQHQVLSNHTH---ARVGIALYGSRPYSSLKPSEIKQALTVKANVIQVRE 248

Query: 248 ALAGELVSYG-GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              G+   Y    +     + +AV  IGY DG       L S     V + GK +     
Sbjct: 249 VNKGDYCGYSFAYECKNHHTRLAVVDIGYGDGI------LKSRAQHDVIINGKRY----- 297

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
            PI  +  M   MF   D L +   D + ++  DI++D+
Sbjct: 298 -PI--RALMMSHMFVEVDEL-VHARDEVVLYNNDIRIDE 332


>gi|308454191|ref|XP_003089746.1| hypothetical protein CRE_10733 [Caenorhabditis remanei]
 gi|308269018|gb|EFP12971.1| hypothetical protein CRE_10733 [Caenorhabditis remanei]
          Length = 769

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 146/359 (40%), Gaps = 35/359 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           R++ID +AL++N   + A  G+A     AV+K +AYG G E + P +  AGV    + S 
Sbjct: 403 RVEIDRSALESNLRYLLAEMGSASPEVCAVLKSDAYGHGIEHVLPVVLAAGVTAVGIVSN 462

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            E   +R      RI  +      + +       + V   +  L     L +   +   +
Sbjct: 463 PEARLVRELGFGGRILRVRAATSAEARGALP---MAVEEWLGGLAHARALAAIAEAVDVS 519

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACAD--DPSSHVN 175
           + V    N  GLS +E+LD   +  + +L  +          I +H    D  D    ++
Sbjct: 520 IPVHLALNSTGLS-KESLDLGASGADAELAGIVASRRLDVRGIAAHFPREDAHDVREGLS 578

Query: 176 SVQLERFRTLIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           + + +  R L +       G++   A+S   L  P     L R G +LYG +        
Sbjct: 579 AFRADADRVLEALGPDRAAGVQRHCATSFAALEVPESRLDLVRIGAALYGDSSAAAPWQR 638

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
               + +E   +   +  AG  V Y    +L  ++ IA   +GY DG P +L G      
Sbjct: 639 RAMRIVSEVSTVC--RYPAGRTVGYERHHRLDAETRIATVPLGYGDGVPRSLGGR----- 691

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DIKLDDVAL 348
                 G   + G  VPI+  + M+    D+T+   +  GD + ++G   + +LD  AL
Sbjct: 692 ------GWALVGGRSVPIVDHLAMNTLAIDVTEIPEVGPGDEVVLYGRQGEAELDGGAL 744


>gi|289550806|ref|YP_003471710.1| Putative alternative form of diaminopimelate epimerase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180338|gb|ADC87583.1| Putative alternative form of diaminopimelate epimerase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 358

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 143/339 (42%), Gaps = 44/339 (12%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY  G E        AG+  F  TS++E V++R   P+A IF++  
Sbjct: 19  VKNNQPIMAVVKNNAYHYGLEYAVNMFLKAGINTFSTTSLKEAVRIRKLAPKATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFY----SKLMSCGVSHPYA-LQVDTGFNRLGLSLQ 140
           ++      I   N I +  ++P L +Y    S L    V   Y  L   +GF  L   L+
Sbjct: 79  VYDFD---IVRHNRIHM--TLPSLQYYYANKSNLYDINVHLEYENLLHRSGFKNLS-ELR 132

Query: 141 EAL-DFTHNSFNKKLGQLSLIISHLACADD---PSSHVNS-VQLERFRTLISH------- 188
           E L D   N+   K+  ++ + +H   AD+   P         L+   TL++        
Sbjct: 133 EVLKDHEQNNQPHKM-HITGLWTHFGYADEFDVPEYDTEKRAWLKVLNTLLAEGYTFDMI 191

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEARIILIRK 247
           +    AS       +L  + H    R GI+LYG     + K   ++  +T +A +I +R+
Sbjct: 192 HAQNSASFYREQHQVLSNHTH---ARVGIALYGSRPYSSLKPSEIKQALTVKANVIQVRE 248

Query: 248 ALAGELVSYG-GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              G+   Y    +     + +AV  IGY DG       L S     V + GK +     
Sbjct: 249 VNKGDYCGYSFAYECKNHHTRLAVVDIGYGDGI------LKSRAQHDVIINGKRY----- 297

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
            PI  +  M   MF   D L +   D + ++  DI++D+
Sbjct: 298 -PI--RALMMSHMFVEVDEL-VHARDEVVLYNNDIRIDE 332


>gi|237736823|ref|ZP_04567304.1| LOW QUALITY PROTEIN: alanine racemase [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420685|gb|EEO35732.1| LOW QUALITY PROTEIN: alanine racemase [Fusobacterium mortiferum
           ATCC 9817]
          Length = 256

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 22/251 (8%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERF 182
           +++DTG  RLG   +E            +  +  I SHL+ AD     S      Q+++F
Sbjct: 10  IKIDTGMGRLGFLPEEGERVVDYCLENGINIMG-IYSHLSDADGFNRESDDYTETQIKKF 68

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHF--QLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           +    +   ++     +SG +L  N      + R GI +YG      +   ++ V   + 
Sbjct: 69  QIFEKYKDKVKYLHILNSGGILRFNEEISGNIVRAGICMYGMIANY-RVEDLKRVFCVKT 127

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I+ IR       +SYG +  L +    A   +GYAD       G+  E S   ++    
Sbjct: 128 KILSIRTVEDDSFISYGRKYVLHKGETFATIGMGYAD-------GIKKEFSNKSYV---- 176

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
            I+G   PI+G+I MDM M  I +S+   I +G  + +   DI ++++ +     ++D+L
Sbjct: 177 IIEGEKCPIIGEICMDMCMVKIPESIKDKISLGTEVIVVRDDI-IEEINIEH-KCSWDIL 234

Query: 359 VRIGTRYAKFY 369
             IG R  + Y
Sbjct: 235 TGIGRRVYRVY 245


>gi|260772889|ref|ZP_05881805.1| alanine racemase [Vibrio metschnikovii CIP 69.14]
 gi|260612028|gb|EEX37231.1| alanine racemase [Vibrio metschnikovii CIP 69.14]
          Length = 407

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 158/383 (41%), Gaps = 44/383 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L   K N     + ++ +++  AV+K +AYG G   + P +   G+    +TS  E
Sbjct: 45  LEINLGQFKTNIEQFKSHINPSSKICAVMKADAYGNGIRGLMPTVIEQGIPCVAITSNAE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL---MSCGVSHPY 124
              +R    Q ++  +      +   + + N+  +I +  Q    ++L   +   +    
Sbjct: 105 ARAVRESGFQGQLMRVRSATINEIAAVAELNIEELIGTKQQAMDLAQLGQRLGTPIKAHL 164

Query: 125 ALQVDTGFNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNS 176
           AL  D G  R G+ +      QEAL  T     +K  Q+  I++H      DD  + + +
Sbjct: 165 ALN-DGGMGRNGVDMSHEKGKQEALSITQ----QKGLQIVGIMTHFPNYNPDDIRAKLAT 219

Query: 177 VQLERFRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
              +    L+       + ++  +A+S   L  P     + RPG  LYG      +  P 
Sbjct: 220 FN-QHANWLVEQGPLKREEVQFHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPEYLP- 277

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             +V+ + RI  +     G+ V Y        D+++A   +GY+DGYP            
Sbjct: 278 --IVSFKTRIASLHHLPTGKTVGYDSTHITDSDTVLANLPVGYSDGYPRK---------- 325

Query: 293 SVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
              +G K    I G    ++G  +M+ TM D++    ++ G  + +FG      I +DD+
Sbjct: 326 ---MGNKAQVLINGQWANVVGVTSMNTTMVDVSTIKGVKPGQEVVLFGAQGKKQISVDDI 382

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
              S     +L    GT   +FY
Sbjct: 383 ETHSDIIFPELYTIWGTANPRFY 405


>gi|239637087|ref|ZP_04678081.1| alanine racemase 2 [Staphylococcus warneri L37603]
 gi|239597437|gb|EEQ79940.1| alanine racemase 2 [Staphylococcus warneri L37603]
          Length = 358

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 126/289 (43%), Gaps = 36/289 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D  A  NN      +       AVVK+NAY  G E        AG+  F  TS++E V+
Sbjct: 7   VDTEAFYNN---AKKVKNQQPIMAVVKNNAYHYGLEFAVRQFLRAGINTFSTTSLKEAVR 63

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +R   P A +F++  ++       FDT     +  ++P L +Y +           L+ +
Sbjct: 64  VRELAPDATVFLMNAVYD------FDTVRDYHIHMTLPSLKYYYEHKEDLRDIHVHLEFE 117

Query: 130 TGFNRLGL----SLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER--- 181
              +R G      +QE L D  HN  N K   +S + +H   AD+    V    +ER   
Sbjct: 118 NLLHRSGFKTLEEIQEVLQDHQHNK-NPKRMIISGLWTHFGYADEFG--VTEYDVERSAW 174

Query: 182 ---FRTLIS---HYKGIEASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSH 230
                TL++    +  I +  ++S    G ++ P  H    R GI+LYG      +N+S 
Sbjct: 175 LNVLHTLLNEGYQFDYIHSQNSASYYREGQVVLP--HHTHARVGIALYGSRPYSGLNES- 231

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADG 278
            +Q  +T +A +I IR+   G+   Y    +   D+  +AV  +GY DG
Sbjct: 232 AIQQALTVKANVIQIREVQNGDYCGYSWAFETQHDNTKLAVVDVGYGDG 280


>gi|315181783|gb|ADT88696.1| alanine racemase [Vibrio furnissii NCTC 11218]
          Length = 409

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 144/351 (41%), Gaps = 46/351 (13%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+LT  ++N     + ++ + +  AV+K NAYG G + + P +    +    + S  E
Sbjct: 47  LEINLTQFRDNIEQFKSKMNNHTKICAVMKANAYGNGIQGLMPTILEQQIPCVAIASNAE 106

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +     G+ K     N+  +I S  Q    S L        + ++
Sbjct: 107 AQAVRDSGFKGELMRVRSASLGEIKDAMHLNVEELIGSAEQAKALSALAKKA---GHDIK 163

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSHVNSV-- 177
           V    N  G+  +  +D T ++  K+  Q++         I++H      PS   + V  
Sbjct: 164 VHLALNDGGMG-RNGIDMTTDAGKKESLQIAAAKGVRIVGIMTHF-----PSYDADEVRQ 217

Query: 178 QLERFRT----LISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           +L  F T    LI   K     I   +A+S   L  P     + RPG  LYG     N  
Sbjct: 218 KLASFNTHSAWLIKEAKLNREDILLHVANSFTALNVPEAQLDMVRPGGVLYG-DQPTNPE 276

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           +P  ++V+ + R+  +        V Y       +DSL+A   +GY+DGYP         
Sbjct: 277 YP--SIVSFKTRVASLHHLPKNSTVGYDSTFTTQQDSLMANIPVGYSDGYPRK------- 327

Query: 290 HSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                 +G K    I G    ++G  +M+ TM D+T    ++ G  + +FG
Sbjct: 328 ------MGNKAQVLINGQRANVVGVASMNTTMVDVTHIKGVKAGSEVVLFG 372


>gi|302558949|ref|ZP_07311291.1| alanine racemase [Streptomyces griseoflavus Tu4000]
 gi|302476567|gb|EFL39660.1| alanine racemase [Streptomyces griseoflavus Tu4000]
          Length = 193

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 20/182 (10%)

Query: 196 LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP--MQTVVTAEARIILIRKALAG 251
           +A+S   L  P  HF L RPGI++YG   + +I  S    ++  +T  A + L++    G
Sbjct: 17  IANSPATLTLPESHFDLVRPGIAMYGISPSPEIGTSADFGLRPAMTLSASLALVKHVPGG 76

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
             VSYG        + + +  +GYADG P         H+ S    G   ++G    + G
Sbjct: 77  HGVSYGHHYVTPGATTLGLVPLGYADGIP--------RHASSA---GPVLVEGKWRTVAG 125

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++ MD  + D+      E G    +FGP    +   +D A A+GT  Y+++ RIG R  +
Sbjct: 126 RVAMDQFVVDLGGD-EPEPGAEAVLFGPGDRGEPTAEDWAQAAGTIAYEIVTRIGARVPR 184

Query: 368 FY 369
            +
Sbjct: 185 VH 186


>gi|262402336|ref|ZP_06078897.1| alanine racemase [Vibrio sp. RC586]
 gi|262351118|gb|EEZ00251.1| alanine racemase [Vibrio sp. RC586]
          Length = 407

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 155/398 (38%), Gaps = 62/398 (15%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + ++ + +  A++K +AYG G   + P +   G+   
Sbjct: 40  QSNSWL--EISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGILCV 97

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q     +L     
Sbjct: 98  GVASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQAM---ELAELAK 154

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SH 173
            +   ++V    N  G+  +  +D T  +  K+          ++ A  PS       +H
Sbjct: 155 KNGKTVKVHMALNDGGMG-RNGIDMTTEAGKKEA---------VSIATQPSLNIVGIMTH 204

Query: 174 VNSVQLERFRTLISHYKGIEASL---------------ASSSGILLGPNYHFQLTRPGIS 218
             +   +  R  ++ +K   A L               A+S   L  P     + RPG  
Sbjct: 205 FPNYNADEVRAKLAKFKESSAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGV 264

Query: 219 LYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
           LYG     N  +P  ++V+ + R+  +     G  V Y       RDS++A   +GY+DG
Sbjct: 265 LYGDL-PTNPEYP--SIVSFKTRVASLHHVPKGTTVGYDSTFTTNRDSVLANLPVGYSDG 321

Query: 279 YPLTLSGLDSEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           YP               +G K    I G    ++G  +M+ TM D+TD   +  G  + +
Sbjct: 322 YPRK-------------MGNKAEVLINGQRAKVIGVTSMNTTMVDVTDIKGVLPGQEVAL 368

Query: 337 FGPDIKLDDVALASGTTNYDLL-----VRIGTRYAKFY 369
           FG   K   +A++    N +L+        GT   +FY
Sbjct: 369 FGQQQK-QSIAVSEMENNAELIFPELYTLWGTSNPRFY 405


>gi|260769245|ref|ZP_05878178.1| alanine racemase [Vibrio furnissii CIP 102972]
 gi|260614583|gb|EEX39769.1| alanine racemase [Vibrio furnissii CIP 102972]
          Length = 409

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 144/351 (41%), Gaps = 46/351 (13%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+LT  ++N     + ++ + +  AV+K NAYG G + + P +    +    + S  E
Sbjct: 47  LEINLTQFRDNIEQFKSKMNNHTKICAVMKANAYGNGIQGLMPTILEQQIPCVAIASNAE 106

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +     G+ K     N+  +I S  Q    S L        + ++
Sbjct: 107 AQAVRDSGFKGELMRVRSASLGEIKDAMHLNVEELIGSAEQAKALSALAKKA---GHDIK 163

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADDPSSHVNSV-- 177
           V    N  G+  +  +D T ++  K+  Q++         I++H      PS   + V  
Sbjct: 164 VHLALNDGGMG-RNGIDMTTDAGKKESLQIAAAKGVRIVGIMTHF-----PSYDADEVRQ 217

Query: 178 QLERFRT----LISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           +L  F T    LI   K     I   +A+S   L  P     + RPG  LYG     N  
Sbjct: 218 KLASFNTHSAWLIKEAKLNREDILLHVANSFTALNVPEAQLDMVRPGGVLYG-DQPTNPE 276

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           +P  ++V+ + R+  +        V Y       +DSL+A   +GY+DGYP         
Sbjct: 277 YP--SIVSFKTRVASLHHLPKNSTVGYDSTFTTQQDSLMANIPVGYSDGYPRK------- 327

Query: 290 HSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                 +G K    I G    ++G  +M+ TM D+T    ++ G  + +FG
Sbjct: 328 ------MGNKAQVIINGQRANVVGVASMNTTMVDVTHIKGVKAGSEVVLFG 372


>gi|325526091|gb|EGD03753.1| alanine racemase [Burkholderia sp. TJI49]
          Length = 117

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 11/101 (10%)

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
           R   I V A GYADGYP         H+P+   G    + G M  ++G+++MDM   D+T
Sbjct: 4   RPMRIGVVACGYADGYP--------RHAPT---GTPIAVDGVMTRVVGRVSMDMLTVDLT 52

Query: 324 DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R
Sbjct: 53  PCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCALARR 93


>gi|319938192|ref|ZP_08012590.1| alanine racemase [Coprobacillus sp. 29_1]
 gi|319806713|gb|EFW03362.1| alanine racemase [Coprobacillus sp. 29_1]
          Length = 260

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 102/216 (47%), Gaps = 2/216 (0%)

Query: 34  AVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
           A++K NAYG G +++A  L +   +  F V +++E + LR    +  I VL  I      
Sbjct: 39  AIIKANAYGHGYQEVANVLKDHEHISMFGVATLKEAIDLRKLGIEQDILVLGAIPLKDLD 98

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
            + D ++   + S   +    +L          +++DTG NR+GL  +   +    ++ K
Sbjct: 99  FVIDYDITLTLFSKEYMEEIVELYHHEKPVKVHIKIDTGMNRIGLKTKTEFEDVLRNYPK 158

Query: 153 KLGQLSLIISHLACADDP-SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
            + Q+  + +H A ADDP  +     QL  F  ++  ++       +S+ ++        
Sbjct: 159 DIFQIDGVFTHFATADDPLQNDAYENQLNMFYDIVGDHQFRYIHCQNSASMMYHHEEKSN 218

Query: 212 LTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
           L R GI++YG      +S  ++ V++  +R+++I+K
Sbjct: 219 LARIGIAMYGVDPAGEESVHLKQVMSLYSRVVMIKK 254


>gi|154507817|ref|ZP_02043459.1| hypothetical protein ACTODO_00299 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797451|gb|EDN79871.1| hypothetical protein ACTODO_00299 [Actinomyces odontolyticus ATCC
           17982]
          Length = 422

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 151/406 (37%), Gaps = 61/406 (15%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   + A +  A   A VK NAYG G   +A A  + G     V  + E   
Sbjct: 19  VDLAAIRHNLGVLRAAAPGALQLATVKANAYGHGLLPVARAALDGGADWLGVAQLAEAFT 78

Query: 71  LR-------LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSH 122
           LR       +    A I               + ++   +S    L    +     G   
Sbjct: 79  LRRGLDEAAVARADAPILAWISTSSSDFAAAIEADIDLSVSWTWVLADICAAAREAGRPA 138

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              +++DTG +R G +L +          + +  L  +    SH++ ADDPS   N+   
Sbjct: 139 RVHVKIDTGMSRAGSTLADLPALASALRMAADDGLVDVVGAWSHMSRADDPSEAGNASTA 198

Query: 180 ERFRTL-----ISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
              R       I    G+      L+++SGIL     H+ + R GI LYG +       P
Sbjct: 199 SHVRIFEEGLAILADAGVTPRIRHLSATSGILWHREAHYDMVRAGIGLYGLS-------P 251

Query: 232 MQTVVTAE-----------ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
              V T+E           A +  ++    G   SYGG         I +  +GY DG  
Sbjct: 252 DPAVATSEQLGLTPALELSAPLTSVKVIEEGTPASYGGTWVAPTRRWIGLVPLGYGDGI- 310

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-------------TDSLS 327
                L +  + +  +    F   +  P++G++ MD  M D+             +    
Sbjct: 311 -----LRAASNQARVVVHTAF-GPFNAPLIGRVCMDQFMVDLGPAEGSPGTPTARSGQAP 364

Query: 328 IEVGDYIQIFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
              GD   +FG  I      DD A A+ T NY+++  +G    + Y
Sbjct: 365 AIPGDIATLFGSGISGEALADDWAQAADTINYEIVTHLGAHIPRIY 410


>gi|270159739|ref|ZP_06188395.1| alanine racemase [Legionella longbeachae D-4968]
 gi|269988078|gb|EEZ94333.1| alanine racemase [Legionella longbeachae D-4968]
          Length = 861

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 165/410 (40%), Gaps = 68/410 (16%)

Query: 9   LKIDLTALKNNWH---SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L I+  A+K N     S      +++   V+K N YGLG + ++     AG+    V  +
Sbjct: 456 LFINTKAIKENIKNIISFGKQCSHSKIIGVIKSNGYGLGSKLVSDLAIEAGIDFLAVAKL 515

Query: 66  EEGVKLR---------LYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           +E + LR         L T +A  I+ L      Q ++I     IP   +   +   +K 
Sbjct: 516 QEAIALRNSGIPSTVRLMTFEAPMIYDLSTYAANQIEVI-----IPSSKNAASINMIAKW 570

Query: 116 MSCGVSH------PYALQVDTGFNRLGLSLQEALDFTHNSFNK------KLGQLSLIISH 163
           +     H         + VDTG  R G       D    + +K         + + + +H
Sbjct: 571 LQN--KHRVLGKLKVHIMVDTGLRRDGGYESNIPDSVMETISKLQLLDPNQVEFAGLSTH 628

Query: 164 LAC------ADDPSSHVNSVQLERFRTLISHY--KGIEASLASSSG--ILLGPNYHFQL- 212
           LAC        D   +  ++Q  RF  +I     +G++  L    G   LL   +  Q  
Sbjct: 629 LACYRCTDYNGDEIINFRALQFHRFEKVIKFLFSQGVQIPLIHIGGGLALLAEKWPLQFE 688

Query: 213 -----------TRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
                      TR G  LYG     D    S  ++ VV  + ++  +     GE VSYGG
Sbjct: 689 KFLKEFNVGFYTRVGHGLYGMELEKDLHLDSPRLRQVVKMDLQVRNVFYVEEGEPVSYGG 748

Query: 259 QKKLTRD-SLIAVAAIGYADGYPLTLSGL-DSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
             +  +D + IA  A G+A+G P T   L + +H   V       I  +  PI+GKI M+
Sbjct: 749 YWRAPKDGAWIATLAGGWAEGVPRTAQTLGEWQHGMMVC------INNHQYPIVGKINMN 802

Query: 317 MTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNYDLLVRIGT 363
             M ++     ++ GD   IFG    + KL+D+A  SG     ++V + T
Sbjct: 803 AMMVNLGSLTKVKPGDRAIIFGWSDHEPKLNDLAQLSGQIAPSIMVNVPT 852


>gi|313619768|gb|EFR91373.1| alanine racemase [Listeria innocua FSL S4-378]
          Length = 199

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 24/202 (11%)

Query: 178 QLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP-- 231
           QL +F+ ++S    +      A+S+  LL P   F   R GIS+YG T   +I  S P  
Sbjct: 10  QLAKFQAILSSLTTRPTFVHTANSAASLLQPQIDFDAIRFGISMYGLTPSTEIKNSLPFE 69

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +     ++ +++   G+ VSYG     T    +A   IGYADG     SG      
Sbjct: 70  LKPALALYTEMVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGFHV--- 126

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     ++G   PI+G+I MD T+  +      + G  + I G D    +  DD A
Sbjct: 127 ---------LVEGERAPIIGRICMDQTIIKLPREF--QTGTKVTIIGSDHGNKVTADDAA 175

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++   +  R  + Y
Sbjct: 176 EYLGTINYEVTCLLTERIPRKY 197


>gi|282916665|ref|ZP_06324423.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus D139]
 gi|282319152|gb|EFB49504.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus D139]
          Length = 361

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 145/338 (42%), Gaps = 43/338 (12%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R     A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAQDATIFLMNA 78

Query: 86  IHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQ 140
           ++       FD      +  ++P LT+Y    +        L+ +   +R G      ++
Sbjct: 79  VYE------FDLVREHQIHMTLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIK 132

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------HYKGIE 193
           E L   H + N K+  +S + +H   AD+      +V+  ++  ++         +  I 
Sbjct: 133 EVLKDHHQNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIH 191

Query: 194 ASLASS---SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKA 248
           A  ++S    G +L P  H    R GI+LYG      +N+ H +   +T +A +I +R+ 
Sbjct: 192 AQNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQ-HDIVQSLTVKAHVIQVREV 248

Query: 249 LAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             G+   Y    ++T+++  +AV  IGY DG   T +              +  I G   
Sbjct: 249 QVGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRTRA------------KHEALINGKRY 296

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
           PI  +  M   MF   D  ++   D + ++  DI++D+
Sbjct: 297 PI--RALMMSHMFVEVDG-NVHAQDEVILYNNDIRIDE 331


>gi|262395354|ref|YP_003287207.1| alanine racemase [Vibrio sp. Ex25]
 gi|262338948|gb|ACY52742.1| alanine racemase [Vibrio sp. Ex25]
          Length = 409

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 141/355 (39%), Gaps = 54/355 (15%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L   ++N     + + G  +  AV+K +AYG G   + P +    +    V S  E
Sbjct: 47  LEINLGQFRDNIEQFKSHMDGKTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAVASNAE 106

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---VSHPY 124
              +R    + ++  +     G+ +   D N+  +I +  Q    SKL       +    
Sbjct: 107 AQTVRDSGFKGQLMRVRSADIGEIEAAIDLNIEELIGTAEQAKALSKLAEKADKEIKVHL 166

Query: 125 ALQVDTGFNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           AL  D G  R G+ +      +EAL+         +G    I++H      P+ + + V 
Sbjct: 167 ALN-DGGMGRNGVDMTTKAGKKEALEIAQQDGVNIVG----IMTHF-----PNYNADEV- 215

Query: 179 LERFRTLISHYKGIEASLASSSG-----ILLG----------PNYHFQLTRPGISLYGGT 223
               R  +S +K   A L   +G     ILL                 + RPG  LYG  
Sbjct: 216 ----RQKLSSFKDSSAWLIKEAGLKREDILLHVANSYTALNVSEAQLDMVRPGGVLYGDL 271

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
              N  +P  ++V+ + R+  +        V Y    K +++SL+A   +GY+DGYP  +
Sbjct: 272 -PTNPEYP--SIVSFKTRVASVHHLPKNSTVGYDSSYKTSKESLMANIPVGYSDGYPRKM 328

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                          +  I G    + G  +M+ TM DIT    +E G  + +FG
Sbjct: 329 GNT-----------AEVLINGQRAKVAGVASMNTTMVDITGIKDVEPGSEVVLFG 372


>gi|289165490|ref|YP_003455628.1| alanine racemase [Legionella longbeachae NSW150]
 gi|288858663|emb|CBJ12558.1| putative alanine racemase [Legionella longbeachae NSW150]
          Length = 861

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 165/410 (40%), Gaps = 68/410 (16%)

Query: 9   LKIDLTALKNNWH---SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L I+  A+K N     S      +++   V+K N YGLG + ++     AG+    V  +
Sbjct: 456 LFINTKAIKENIKNIISFGKQCSHSKIIGVIKSNGYGLGSKLVSDLAIEAGIDFLAVAKL 515

Query: 66  EEGVKLR---------LYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           +E + LR         L T +A  I+ L      Q ++I     IP   +   +   +K 
Sbjct: 516 QEAIALRNSGIPSTVRLMTFEAPMIYDLSTYAANQIEVI-----IPSSKNAASINMIAKW 570

Query: 116 MSCGVSH------PYALQVDTGFNRLGLSLQEALDFTHNSFNK------KLGQLSLIISH 163
           +     H         + VDTG  R G       D    + +K         + + + +H
Sbjct: 571 LQN--KHRVLGKLKVHIMVDTGLRRDGGYESNIPDSVMETISKLQLLDPNQVEFAGLSTH 628

Query: 164 LAC------ADDPSSHVNSVQLERFRTLISHY--KGIEASLASSSG--ILLGPNYHFQL- 212
           LAC        D   +  ++Q  RF  +I     +G++  L    G   LL   +  Q  
Sbjct: 629 LACYRCTDYNGDEIINFRALQFHRFEKVIKFLFSQGVQIPLIHIGGGLALLAEKWPLQFE 688

Query: 213 -----------TRPGISLYG---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
                      TR G  LYG     D    S  ++ VV  + ++  +     GE VSYGG
Sbjct: 689 KFLKEFNVGFYTRVGHGLYGMELEKDLHLDSPRLRQVVKMDLQVRNVFYVEEGEPVSYGG 748

Query: 259 QKKLTRD-SLIAVAAIGYADGYPLTLSGL-DSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
             +  +D + IA  A G+A+G P T   L + +H   V       I  +  PI+GKI M+
Sbjct: 749 YCRAPKDGAWIATLAGGWAEGVPRTAQTLGEWQHGMMVC------INNHQYPIVGKINMN 802

Query: 317 MTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNYDLLVRIGT 363
             M ++     ++ GD   IFG    + KL+D+A  SG     ++V + T
Sbjct: 803 AMMVNLGSLTKVKPGDRAIIFGWSDHEPKLNDLAQLSGQIAPSIMVNVPT 852


>gi|229521424|ref|ZP_04410843.1| alanine racemase [Vibrio cholerae TM 11079-80]
 gi|229341522|gb|EEO06525.1| alanine racemase [Vibrio cholerae TM 11079-80]
          Length = 428

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 159/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + +S N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRVSSLHHMPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G  V ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRVKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|242309198|ref|ZP_04808353.1| alanine racemase [Helicobacter pullorum MIT 98-5489]
 gi|239524239|gb|EEQ64105.1| alanine racemase [Helicobacter pullorum MIT 98-5489]
          Length = 359

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 45/286 (15%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90
           + A V+KDNAYG G  ++A     AG+   FV + +E +++  +     I +LY      
Sbjct: 29  KIAIVLKDNAYGHGLVELAKISSEAGITSCFVKNTQEAIEVAKWFEH--ISILYPQSLES 86

Query: 91  EKI----IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS---LQEAL 143
           E +    I   N+   ++++  L  Y             L++++G NR G+    LQEAL
Sbjct: 87  ETLLKSCIQRENIYFCVANIESLDLYPP------KSKIELKINSGMNRNGIQINKLQEAL 140

Query: 144 D------------FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191
                        F+HN F   +G      S     +D + H+    L+  +   +  K 
Sbjct: 141 KKSLENKLEIVGVFSHNGFGDNIG------SEFYAQNDSNLHIKREVLQFCKA--NSLKK 192

Query: 192 IEASLASSSGILLGPNYHFQLT--------RPGISLYG--GTDKINKSHPMQTVVTAEAR 241
                 SSSG L    Y+  L         R GI+LYG    D +     ++ + +  A+
Sbjct: 193 PRFHFLSSSGALRAAKYNVSLPIELQDDLYRIGIALYGYLCQDSMLYEVQLKPIASLWAK 252

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            I  +    G  + YGG  K+  D L++   IGY DG      G++
Sbjct: 253 KISTQLLKKGSRIGYGGISKVDEDMLVSTYDIGYGDGLFRVREGME 298


>gi|315636229|ref|ZP_07891483.1| alanine racemase [Arcobacter butzleri JV22]
 gi|315479590|gb|EFU70269.1| alanine racemase [Arcobacter butzleri JV22]
          Length = 340

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 138/322 (42%), Gaps = 48/322 (14%)

Query: 13  LTALKNNWHSMNALSGNA----RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L + +N +++++ +S  A    + A V+KDNAYG G  +IA      G++   V ++++ 
Sbjct: 5   LLSKENLFYNLDVISKKAGSKEKVAVVLKDNAYGHGLVEIATLAKEFGIKKAVVRTIDDA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           +K+        +      H          N +  I  +P             +    ++V
Sbjct: 65  LKIEKLFDFILVLAEKSFHTYSHTFHIALNSLEDIDKLPN------------NSNVHIKV 112

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG +R G+   E L+      ++K  +++ + +H   AD+ S+     Q E F  +   
Sbjct: 113 DTGMHRNGI-YPEDLEKAFLGLSEKNIKVTGVFTHHRGADELSTDF-FWQKENFSLVKKS 170

Query: 189 YKGIEASL---------ASSSGILLGPNYHFQLTRPGISLYGGTDKIN-----KSHPMQT 234
            K I   L          +S+ +    N+    TR GI+ YG  D  +     K  P+ +
Sbjct: 171 VKNICEKLFLPIPLFHSCNSAALFRTENFDEDFTRVGIATYGYLDDSDVFNFPKLKPVMS 230

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +  +     +++K   G+ V YGG    T D L++   +GY DG+ L L+   S  +P  
Sbjct: 231 LWASRLSTRILKK---GQSVGYGGTFTTTEDMLVSTYDVGYGDGF-LRLNERKSYTTP-- 284

Query: 295 FLGGKGFIKGYMVPILGKITMD 316
                   KGY V  LG+++MD
Sbjct: 285 --------KGYKV--LGRVSMD 296


>gi|241667310|ref|ZP_04754888.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 351

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 43/344 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+   +K+N   +   + +++   +VK NAYG+G E I     N  V  + +  ++E 
Sbjct: 7   VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGIGIENIYKVT-NDLVDAYGIARIDEY 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             L+       I  L GI+          N+IP++S+V  +  Y K      S    L  
Sbjct: 66  YVLKNLGCTKDIVFLSGIYAECFDFKIPKNVIPILSNVLLIKDYIKYED-DKSKQVMLDF 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-------IISHLACA----DDPSSHVNSV 177
           D G  R G        F  + F K L  L +       + SH+       D    +++ +
Sbjct: 125 DCGMGRFG--------FYRDDFIKHLDMLKISGFSNIILFSHIPTGYNGYDRSKKYIDKI 176

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
                  L++    ++ + ++S   L   ++  +  R   ++ G      +   ++  ++
Sbjct: 177 ------LLLAEETKLKYTFSNSPVSLFDTDFLQEYIRSSSAVLGYD---QEPKEIKFSLS 227

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +A II IR    GE +SYG +    +D+ +A+  IGYADG      G +  H   + + 
Sbjct: 228 LKACIISIRDIPKGEYISYGNEYFCNKDTTVAILNIGYADGL-----GCEIHHDSYLLIN 282

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD 340
                     PIL  I MD    DI+     +++ D I++FGP+
Sbjct: 283 ATK------CPILS-INMDYLYVDISAIKHQLKMLDMIELFGPN 319


>gi|118496926|ref|YP_897976.1| alanine racemase [Francisella tularensis subsp. novicida U112]
 gi|194324153|ref|ZP_03057927.1| alanine racemase, C- domain family [Francisella tularensis subsp.
           novicida FTE]
 gi|118422832|gb|ABK89222.1| alanine racemase [Francisella novicida U112]
 gi|194321600|gb|EDX19084.1| alanine racemase, C- domain family [Francisella tularensis subsp.
           novicida FTE]
          Length = 351

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 29/337 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+   +K+N   +   + +++   +VK NAYG+G E I     N  V  + +  +EE 
Sbjct: 7   VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGVGIENIYKVTNNL-VDAYGIARIEEY 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             L+       I  L GI+          N+IP++ +   +  Y K      S    L  
Sbjct: 66  YVLKSLGCTKDIIFLSGIYAECFDFKIPKNVIPILGNELLIKDYIKYED-DKSKQVMLDF 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA----DDPSSHVNSVQLERFRT 184
           D G  R G    + +   +   N     ++L  SH+       D    ++     ++  +
Sbjct: 125 DCGMGRFGFYKDDFIKHLYKLKNAGFSNITLF-SHIPTGYNGFDKSKKYI-----DKILS 178

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           L +  K ++ + ++S   L   ++  +  RP  ++ G      +   ++  +  +A II 
Sbjct: 179 LATQTK-LKYTFSNSPVSLFSYDFQQEYIRPCSAILGYD---QEPQEIKFSLALKACIIS 234

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           IR    G+ +SY  +    RD+ +A+  IGYADG    +      H  S  +     IK 
Sbjct: 235 IRDIPKGQYISYANEYFCDRDTTVAILNIGYADGLGCKI------HKDSYLI-----IKD 283

Query: 305 YMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD 340
              PIL  I MD    DI+     +++ D I++FGP+
Sbjct: 284 TKCPILA-INMDYLYIDISAIKHQLKILDMIELFGPN 319


>gi|332982771|ref|YP_004464212.1| alanine racemase [Mahella australiensis 50-1 BON]
 gi|332700449|gb|AEE97390.1| alanine racemase [Mahella australiensis 50-1 BON]
          Length = 366

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 121/286 (42%), Gaps = 26/286 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L++D  A+ +N  ++    G     AVVK NAYG G  +++  L +AGV+ F V  ++EG
Sbjct: 6   LEVDKRAIIDNLETVRKEVG-VSVMAVVKGNAYGHGAVEVSATLADAGVEWFGVEFLDEG 64

Query: 69  VKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V+LR    + RI    G +     +   + ++ P + ++      + +     +     L
Sbjct: 65  VRLRESGIEGRILCFTGPVDKDDCRAFIEYDITPAMYNLDAAAMLNDVAEEEDIMFKVHL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA---------CADDPSSHVNSV 177
           + DTG  R G        FT++  +  + +L     HL           A         +
Sbjct: 125 KFDTGMGRFG--------FTYDELDGVIDRLK-AFEHLEYEGAFTHFAAAFAKKPDYTLL 175

Query: 178 QLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           QLERF   +   +  GI+  +   A+S   +  P     + R G +L+G     N+S  +
Sbjct: 176 QLERFNKCMDKLETGGIKVQIRHAANSVAAMDFPQARLDMVRVGGALFGTAMFKNRSVKL 235

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
           +     +A ++ +R    G  + YG   + ++   I V   GY +G
Sbjct: 236 KKTALLKAILMDVRDMPKGAYIGYGCTYRTSKPMRIGVIPFGYFEG 281


>gi|153830040|ref|ZP_01982707.1| putative alanine racemase [Vibrio cholerae 623-39]
 gi|148874480|gb|EDL72615.1| putative alanine racemase [Vibrio cholerae 623-39]
          Length = 428

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 158/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + +S N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANMPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|208780376|ref|ZP_03247717.1| alanine racemase, C- domain family [Francisella novicida FTG]
 gi|208743744|gb|EDZ90047.1| alanine racemase, C- domain family [Francisella novicida FTG]
          Length = 351

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 143/339 (42%), Gaps = 33/339 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+   +K+N   +   + +++   +VK NAYG+G E I     N  V  + +  +EE 
Sbjct: 7   VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGVGIENIYKVTNNL-VDAYGIARIEEY 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             L+       I  L GI+          N+IP++ +   +  Y K      S    L  
Sbjct: 66  YVLKSLGCTKDIIFLSGIYAECFDFKIPKNVIPILGNELLIKDYIKYED-DKSKQVMLDF 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACA----DDPSSHVNSVQLERF 182
           D G  R G       DF  + +  K    S II  SH+       D    ++     ++ 
Sbjct: 125 DCGMGRFGFYKD---DFIKHLYKLKNAGFSNIILFSHIPTGYNGFDKSKKYI-----DKI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
            +L +  K ++ + ++S   L   ++  +  RP  ++ G      +   ++  +  +A I
Sbjct: 177 LSLATQTK-LKYTFSNSPVSLFSYDFQQEYIRPCSAILGYD---QEPQEIKFSLALKACI 232

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I IR    G+ +SY  +    RD+ +A+  IGYADG    +      H  S  +     I
Sbjct: 233 ISIRDIPKGQYISYANEYFCDRDTTVAILNIGYADGLGCKI------HKDSYLI-----I 281

Query: 303 KGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD 340
           K    PIL  I MD    DI+     +++ D I++FGP+
Sbjct: 282 KDTKCPILA-INMDYLYIDISAIKHQLKILDMIELFGPN 319


>gi|288960918|ref|YP_003451257.1| alanine racemase [Azospirillum sp. B510]
 gi|288913226|dbj|BAI74713.1| alanine racemase [Azospirillum sp. B510]
          Length = 389

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 147/371 (39%), Gaps = 53/371 (14%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L+   R   VVK NAYG G   ++ AL  AG+  F V S +EG  LR     A I V+  
Sbjct: 33  LAPTTRILGVVKANAYGHGAVAVSRALERAGIDGFAVDSPDEGTALRDAGIAAPILVMNP 92

Query: 86  IHPGQEKIIFDTNLIPVIS--SVPQLTFYSKLMSCGVSHPY-------ALQVDTGFNRLG 136
           + PG    +    L   +S     Q    +   + GV+  +             G    G
Sbjct: 93  LCPGDAPALVAAGLTAAVSDGEAAQALDDAARRAGGVAGLHVRVRADADGMGGDGLGTGG 152

Query: 137 LSLQEALDFTHNSFNKKLGQLSLIISHLACA--DDPSSHVNSVQLERFRTLISHYKGIEA 194
             +   L   H   N ++  L    +H+     DDP      VQ+ R    I+ ++G+  
Sbjct: 153 DGVAPLLRALHRFANLRVEGL---FTHMIGPYRDDP------VQIGRE---IAGFRGLLG 200

Query: 195 SL------------ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEA 240
            L            A+S G+   P   F + R G  LYG    +      P + V+   +
Sbjct: 201 RLPADVPRPPLIHAATSPGLFNAPGARFDMVRLGAVLYGIRMVEAGGAPFPFRPVMELVS 260

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RI  + +   G+ + YG   +       A+  +GYAD  P  L+  D+            
Sbjct: 261 RIAHLGRLEPGDDIGYGPAARRRTGGRAAMIPMGYAD-LPFLLNFRDTAV---------- 309

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            I+G   P++G+  M   + D+TD    E+GD +   G      I ++D+  A+G     
Sbjct: 310 LIRGRRAPLIGEAFMGKVLADVTDIPEAELGDEVVFVGAQGMESITVEDIGKANGIRPSA 369

Query: 357 LLVRIGTRYAK 367
           +L+ +G R A+
Sbjct: 370 ILM-LGPRVAR 379


>gi|229529606|ref|ZP_04418996.1| alanine racemase [Vibrio cholerae 12129(1)]
 gi|229333380|gb|EEN98866.1| alanine racemase [Vibrio cholerae 12129(1)]
          Length = 428

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 158/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + +S N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|262190944|ref|ZP_06049158.1| alanine racemase [Vibrio cholerae CT 5369-93]
 gi|262033181|gb|EEY51705.1| alanine racemase [Vibrio cholerae CT 5369-93]
          Length = 407

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 154/383 (40%), Gaps = 44/383 (11%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L   ++N     + +S N +  A++K +AYG G   + P +   G+    V S  E
Sbjct: 45  LEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNAE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPY 124
              +R    +  +  +      +   + D N+  +I +  Q   L   +K     +    
Sbjct: 105 ARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQAFDLAELAKQSGKTIKVHI 164

Query: 125 ALQVDTGFNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           AL  D G  R G+ +      +EA+          +G    I++H    +         Q
Sbjct: 165 ALN-DGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVG----IMTHFPNYNADEVRAKLAQ 219

Query: 179 LERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 220 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTNPEYP-- 276

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP             
Sbjct: 277 SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----------- 325

Query: 294 VFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
             +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   +A++  
Sbjct: 326 --MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QSIAVSEM 382

Query: 352 TTNYDLL-----VRIGTRYAKFY 369
             N +L+        GT   +FY
Sbjct: 383 ENNAELIFPELYTLWGTSNPRFY 405


>gi|330684704|gb|EGG96402.1| putative alanine racemase [Staphylococcus epidermidis VCU121]
          Length = 358

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 42/330 (12%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           AVVK+NAY  G E        AG+  F  TS++E V++R   P A +F++  ++      
Sbjct: 27  AVVKNNAYHYGLEFAVKQFLRAGINTFSTTSLKEAVRVRELAPDATVFLMNAVYD----- 81

Query: 94  IFDT-NLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQEALDFTHN 148
            FDT     +  ++P L +Y +  +        L+ +   +R G      +Q+ L     
Sbjct: 82  -FDTVRDYHIHMTLPSLNYYYEHKADLRDIHVHLEFENLLHRSGFKTLEEIQQVLQDHQQ 140

Query: 149 SFNKKLGQLSLIISHLACADD----PSSHVNSVQLERFRTLIS---HYKGIEASLASS-- 199
           + N +   +S + +H   AD+          S  L    TL++    +  I +  ++S  
Sbjct: 141 NKNSERMIISGLWTHFGYADEFGVPEYDEERSAWLNVLHTLLNEGYQFDYIHSQNSASYY 200

Query: 200 -SGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELVSY 256
             G ++ P  H    R GI+LYG      +++S  +Q  +T +A +I IR+   G+   Y
Sbjct: 201 REGQVVLP--HHTHARVGIALYGSRPYSDLDES-TIQQALTVKANVIQIREVQNGDYCGY 257

Query: 257 GGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
               +   D+  +AV  +GY DG   T     ++H        +  I G   PI  +  M
Sbjct: 258 SWAFETQHDNTKLAVVDVGYGDGILRTR----AQH--------EALINGKRYPI--RALM 303

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
              MF   D   +   D + ++   +++D+
Sbjct: 304 MSHMFVEVDE-HVHAQDQVVLYNESMRIDE 332


>gi|153827222|ref|ZP_01979889.1| alanine racemase, putative [Vibrio cholerae MZO-2]
 gi|149738872|gb|EDM53204.1| alanine racemase, putative [Vibrio cholerae MZO-2]
          Length = 428

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 158/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  ++ L   ++N     + +S N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EVSLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|260461729|ref|ZP_05809975.1| alanine racemase [Mesorhizobium opportunistum WSM2075]
 gi|319785281|ref|YP_004144757.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|259032370|gb|EEW33635.1| alanine racemase [Mesorhizobium opportunistum WSM2075]
 gi|317171169|gb|ADV14707.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 381

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 151/378 (39%), Gaps = 38/378 (10%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL A+++N+  +   L    +  A +K NAYG G   +A  L   G   F V ++ + 
Sbjct: 23  EIDLGAIRHNYRQLRRHLPRTVKIFACLKRNAYGCGAGPVARTLATEGADGFAVATLPDA 82

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + +R       + +  G  P   K I    L   +SS+ +L  +   MS  V+  + ++ 
Sbjct: 83  MAIREMGIDLPVLLYPGPLPTSAKTIEALGLTVTVSSLDELESWRAAMS--VTRIF-VKA 139

Query: 129 DTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           D GF R G + QE    L   H   + ++  L   +S L     P+S V S   E+F  L
Sbjct: 140 DLGFFRAGATPQEIGRLLAAAHVCSDVEVQGLYAHLSEL-----PTS-VTSDASEQFSRL 193

Query: 186 ISHYKGIEAS--------LASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTV 235
               +  EAS        ++S++G+L  P        PG    G   TD+  ++  ++  
Sbjct: 194 QRILQDAEASGTRPPIIMMSSTAGVLRHPAMDLDAVDPGALFIGLPETDRPMRAVTLRPA 253

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           + A +  ++  K +   L              I V  +G+ DG P         H P+  
Sbjct: 254 LKAISTCLVSVKRIDASLGPIPDIPGFRSGMTIGVLGMGWGDGLP--------RHVPA-- 303

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              +  ++G    +L    ++    D+TD      GD + + G      I  ++VA   G
Sbjct: 304 -QAEALVRGQRARLLPPAHLEHLRIDLTDVPDARFGDQVLLLGQQAHQTISHEEVAAQWG 362

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T    L  ++     + Y
Sbjct: 363 TDLIGLYAQLRDHIPRVY 380


>gi|153802661|ref|ZP_01957247.1| alanine racemase, putative [Vibrio cholerae MZO-3]
 gi|124121789|gb|EAY40532.1| alanine racemase, putative [Vibrio cholerae MZO-3]
          Length = 428

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 158/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + +S N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRLSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVIPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|229525903|ref|ZP_04415308.1| alanine racemase [Vibrio cholerae bv. albensis VL426]
 gi|229339484|gb|EEO04501.1| alanine racemase [Vibrio cholerae bv. albensis VL426]
          Length = 428

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 158/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + +S N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARVVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|32267015|ref|NP_861047.1| alanine racemase [Helicobacter hepaticus ATCC 51449]
 gi|32263067|gb|AAP78113.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 344

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 121/287 (42%), Gaps = 34/287 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID  + K+N + +++  G +   A+V KDNAYG G E+I+      G++  FV +  E +
Sbjct: 6   IDSQSYKHNLNLISSHIGTSTELAIVLKDNAYGHGLEQISTLAREYGIKSVFVKNYAEAM 65

Query: 70  KLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +++   P   I  LYG+  G     I F  N    IS +P+ T               L+
Sbjct: 66  QIKDDFPC--ITALYGMPQGTFPPHIAFVINHKEHISILPKGT------------NVELK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           V+ G NR G+   E  +F     ++ L  +  + SH    DD        Q ERF  +  
Sbjct: 112 VNAGMNRNGIQASEISEFVELILHRGLNLIG-VFSHNGYGDDIDEEFERTQ-ERFALIKQ 169

Query: 188 HYKGIEA----------SLASSSGI--LLGPNYHFQLTRPGISLYGGTDKINK---SHPM 232
             K +            SL+SS  I   +  N +  L R GI+ YG  D   +   S  +
Sbjct: 170 EIKELAQKYGFPLPRFHSLSSSGAIREAMNNNINDDLVRIGIAAYGYLDVAFENPISAKL 229

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
           + V    A  I  R       + Y G  K+   ++++   IGY DG+
Sbjct: 230 RKVAALYADRISTRVLPQNARIGYSGCTKMDSKNIVSTYDIGYGDGF 276


>gi|317133108|ref|YP_004092422.1| alanine racemase [Ethanoligenens harbinense YUAN-3]
 gi|315471087|gb|ADU27691.1| alanine racemase [Ethanoligenens harbinense YUAN-3]
          Length = 364

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 107/253 (42%), Gaps = 11/253 (4%)

Query: 35  VVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEEGVKLRLYTPQARIFVL--YGIHPGQE 91
           V+K NAYGLG  ++A  L   A V  F V+ +EE  +L+   P   IF+L  YG     E
Sbjct: 29  VLKGNAYGLGDVEVARLLREKADVHLFAVSRLEEAKRLKEALPDEEIFLLSPYGTEKEAE 88

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150
           +I+    L   + S       + L    G      L+ DTG  R G   +EA      + 
Sbjct: 89  EIV-RLGLTATVGSYGSAVLLNGLSEKAGTRCRVHLKFDTGLGRSGFLPEEAEKAVQAAK 147

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASL---ASSSGILLG 205
             K  +++   SH + +          QL+R +  ++  K  G+E  +   A+S+  +L 
Sbjct: 148 YLKNLEIAGCFSHFSNSFGKDEKGVRTQLDRLQHCVAALKNAGVEPGMLHIAASNAAILY 207

Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
           P+      R G +L G     NK   +  V   E  I  +R   AG  V YG      + 
Sbjct: 208 PSARLDAVRCGSALLGRVGVRNKL-GLHKVGRLECPISDVRWLPAGHNVGYGNTYTTKKP 266

Query: 266 SLIAVAAIGYADG 278
           + IA    GYADG
Sbjct: 267 ARIATIQAGYADG 279


>gi|50954713|ref|YP_062001.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951195|gb|AAT88896.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 370

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 157/379 (41%), Gaps = 52/379 (13%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DL AL+ N  ++  L   A T   VK +AYG G   IA A   AG     V  +  
Sbjct: 13  RAVVDLAALRRNVATLTRLIAPAETMLAVKADAYGHGLLPIAEAGVQAGATSLAVLEISA 72

Query: 68  GVKLRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G+ LR       +   L+G        I + ++   IS+  QL   +   +   +  + L
Sbjct: 73  GLVLRRAGVTVPLLAWLHGTGTDWRAGI-ENDIQLGISARWQLEAIAAAAADRAAIVH-L 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFN-KKLG--QLSLIISHLACADDPSSHVNSVQLERFR 183
           +VDTG +R G + +E       +   ++ G  +L    SHLA   D S   +   L  FR
Sbjct: 131 KVDTGLSRNGATREEWPALVDAALALQETGVVRLRAAWSHLA---DASIADDEAALAEFR 187

Query: 184 TLISHYKGIEASL------ASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQT 234
             ++  +   A        ASS+GI + P   F L R GI+ YG +   D       ++ 
Sbjct: 188 EAVAEAEARGARFEMLHLAASSAGIRM-PEARFALVRFGIAAYGLSPFDDTTGAELGLRP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  EA +I +        V      +L          IG+ADG P TL GL      SV
Sbjct: 247 VMRLEAPVIAVH-------VDGTTHVRL---------GIGFADGVP-TL-GL---ARTSV 285

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
            LGG+        P++  +  D  + D   +  +E GD   +FGP    +   ++ A  +
Sbjct: 286 LLGGR------RCPVI-AVEADAMLVD-AGAQRVERGDTAVLFGPGDSGEATAEEYAEWA 337

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT   +++  +  R  + Y
Sbjct: 338 GTIADEMVTGVAARVPRVY 356


>gi|254226880|ref|ZP_04920449.1| alanine racemase [Vibrio cholerae V51]
 gi|125620597|gb|EAZ48962.1| alanine racemase [Vibrio cholerae V51]
          Length = 411

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 153/373 (41%), Gaps = 39/373 (10%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + +S N +  A++K +AYG G   + P +   G+   
Sbjct: 47  QSNSWL--EISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 104

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L     
Sbjct: 105 GVASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAK--- 161

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 162 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 220

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 221 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 279

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP       
Sbjct: 280 PEYP--SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----- 332

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 333 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVIPGQEVVLFGQQQK-QS 383

Query: 346 VALASGTTNYDLL 358
           +A++    N +L+
Sbjct: 384 IAVSEMENNAELI 396


>gi|254286591|ref|ZP_04961547.1| alanine racemase, putative [Vibrio cholerae AM-19226]
 gi|150423349|gb|EDN15294.1| alanine racemase, putative [Vibrio cholerae AM-19226]
          Length = 428

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 158/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + ++ N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRVSSLHHVPKGSTVGYDSTFTSSRDSVLANLPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|268679013|ref|YP_003303444.1| alanine racemase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617044|gb|ACZ11409.1| alanine racemase [Sulfurospirillum deleyianum DSM 6946]
          Length = 342

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 122/291 (41%), Gaps = 55/291 (18%)

Query: 18  NNWHSMNALS----GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE-GVKLR 72
           N +H++  LS    G  R  AV+KDNAYG G  ++A      G++   V +VEE GV   
Sbjct: 10  NLFHNLALLSTKAGGKERVMAVLKDNAYGHGLREMAQLCCEFGIKKAAVKNVEEAGVIAD 69

Query: 73  LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA------L 126
           L+                E+++   + +P+    P L+F +   SC +           L
Sbjct: 70  LF----------------EEVLILVDQVPLEPLAPNLSFAAH--SCEMLEALREGSSIHL 111

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV--NSVQLERFRT 184
            +DTG +R G+   E +D       KK      + +H   AD+ S+         ER + 
Sbjct: 112 SIDTGMHRNGIKEHE-IDRAMALILKKRLVFKGVFTHFRSADELSTAFFWQRSLFERAKQ 170

Query: 185 LIS------HYKGIEASLASSSGIL----LGPNYHFQLTRPGISLYGGTDKINKSHP--- 231
            I       H   +     +S+G+L    LG + +    R GI++YG     N  HP   
Sbjct: 171 RIKAFVLAHHLPEVAFHSCNSAGLLRTNSLGDDAY---ARVGIAMYG----YNTLHPSFK 223

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
              ++ V+   A  +  R    GE V YGG  +   D LI+   IGY DG+
Sbjct: 224 AYELKPVLALWAEKLSTRILKRGERVGYGGVYEAPCDELISTYDIGYGDGF 274


>gi|157737037|ref|YP_001489720.1| alanine racemase [Arcobacter butzleri RM4018]
 gi|226711026|sp|A8ESX7|ALR_ARCB4 RecName: Full=Alanine racemase
 gi|157698891|gb|ABV67051.1| alanine racemase [Arcobacter butzleri RM4018]
          Length = 340

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 137/322 (42%), Gaps = 48/322 (14%)

Query: 13  LTALKNNWHSMNALSGNA----RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L + +N +++++ +S  A    + A V+KDNAYG G  +IA      G++   V ++++ 
Sbjct: 5   LLSKENLFYNLDVISKKAGSKEKVAVVLKDNAYGHGLVEIATLAKEFGIKKAVVRTIDDA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           +K+        +      H          N +  I  +P             +    ++V
Sbjct: 65  LKIEKLFDFILVLAEKSFHTYSHTFHIALNSLEDIDKLPN------------NSNVHIKV 112

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG +R G+   E L+       ++  +++ + +H   AD+ S+     Q E F  +   
Sbjct: 113 DTGMHRNGI-YPEDLEKAFLGLLERNIKVTGVFTHHRGADELSTDF-FWQKENFSLVKKS 170

Query: 189 YKGIEASL---------ASSSGILLGPNYHFQLTRPGISLYGGTDKIN-----KSHPMQT 234
            K I   L          +S+ +    N+    TR GI+ YG  D  +     K  P+ +
Sbjct: 171 VKNICEKLFLPIPLFHSCNSAALFRTENFDEDFTRVGIATYGYLDDSDVFNFPKLKPVMS 230

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +  +     +++K   G+ V YGG    T D L++   +GY DG+ L L+   S  +P  
Sbjct: 231 LWASRLSTRILKK---GQSVGYGGTFTTTEDMLVSTYDVGYGDGF-LRLNERKSYTTP-- 284

Query: 295 FLGGKGFIKGYMVPILGKITMD 316
                   KGY V  LG+++MD
Sbjct: 285 --------KGYKV--LGRVSMD 296


>gi|323464498|gb|ADX76651.1| alanine racemase 2 [Staphylococcus pseudintermedius ED99]
          Length = 359

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 147/343 (42%), Gaps = 43/343 (12%)

Query: 22  SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF 81
           ++  ++ N    AVVK+NAY  G +        AG+  F  TS+ E V++R   P+A IF
Sbjct: 15  NVKQVTQNQSVMAVVKNNAYNYGLDFAVQMFQQAGIDTFSTTSLVEAVRIRELAPEATIF 74

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141
           ++      +     D ++     ++P LTFY +  +        L+ +   +R G   ++
Sbjct: 75  LMNATDEFERLRANDIHM-----TLPSLTFYRENKAALAGVKVHLEYENLLHRSGFKTKD 129

Query: 142 AL-----DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--------H 188
            L     D   N   K   +++ + +H   AD+    ++  + E + T++         H
Sbjct: 130 ELLAVLADHEQNPAPKM--EITGLWTHFGYADEFDVDMHEKEREAWLTIVETLVKQRGYH 187

Query: 189 YKGIEASLASSSGILLGPNY--HFQLTRPGISLYGGTDKINKSHP--MQTVVTAEARIIL 244
           +  I A   S+S    G     H    R GI+LYG     + S P  +   +T +A +I 
Sbjct: 188 FDLIHAQ-NSASYYREGQRVFDHHTHARIGIALYGSRPYASLS-PGCITQALTVKANVIQ 245

Query: 245 IRKALAGELVSYGGQKKLTR-DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           +R    G+   Y     + +  + +AV  +GY DG   T +  D      V + GK +  
Sbjct: 246 VRNVQQGDHCGYSFAYTVEQPHTRLAVVDVGYGDGILRTRAQHD------VSINGKRY-- 297

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDD 345
               PI   + M     ++ D++S +  D + ++   D+++DD
Sbjct: 298 ----PIRA-LMMSHMFVEVDDTVSAK--DSVILYNNSDLRIDD 333


>gi|317064205|ref|ZP_07928690.1| alanine racemase [Fusobacterium ulcerans ATCC 49185]
 gi|313689881|gb|EFS26716.1| alanine racemase [Fusobacterium ulcerans ATCC 49185]
          Length = 353

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 137/314 (43%), Gaps = 34/314 (10%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL--RLYTPQARIFVLYGIHPGQEK 92
           V+K NAYG   E ++  LY+ G ++F V  + E  K+        +RI V   I      
Sbjct: 33  VLKANAYGHSIEMVSEILYDNGYREFAVARLNEAEKILQNKKVTDSRILVFESIGREFFD 92

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
           ++   N I +  S   L    + +  G+S     L++D GF R G+ +QE ++       
Sbjct: 93  VVKSNNTIEI--SANTLAELKEFIENGISPDRIQLKIDFGFGRNGI-IQEDIENLKKYIE 149

Query: 152 KKLGQLSLIISHL-ACADDPSSHVNSVQLERFRTLISHYKGIEA----SLASSSGILLGP 206
           KK      I SHL A   D  + +    +E+F   +  Y G E      + +S GILL  
Sbjct: 150 KKNLSFKGIYSHLYAVEYDEGAEL----IEKFTETVK-YLGKERFQMIHIQNSVGILLYG 204

Query: 207 NYHFQL-TRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
           N       RPGI +YG  ++      ++ V   E +I  +R     + ++Y  +  L+ +
Sbjct: 205 NCDMMTHLRPGIYIYGLQEEGFFQEGLKQVFKLEGKIAGVRDVSKSKYLAYNLKTTLSEN 264

Query: 266 SL--IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
                A   IGY +G+        +E S  +  G     K Y + +   +TMD T  ++ 
Sbjct: 265 DFNYAAKIKIGYGEGFSKA-----NEKSCCLING-----KSYKILL---VTMDNTFIEVD 311

Query: 324 DSLSIEVGDYIQIF 337
           +  SI+ GD++ ++
Sbjct: 312 E--SIKEGDHVALY 323


>gi|34557112|ref|NP_906927.1| alanine racemase [Wolinella succinogenes DSM 1740]
 gi|34482827|emb|CAE09827.1| ALANINE RACEMASE [Wolinella succinogenes]
          Length = 342

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 125/289 (43%), Gaps = 36/289 (12%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+  A  +N   + N +    + A V+KDNAYG G  ++A     AG+   FV +  E
Sbjct: 4   LRINSQAFFHNLKLLANHVGSKEKVAVVLKDNAYGHGLLEMALLCKEAGIASAFVKNEAE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            +++  Y     +  LYG    +       N+   + S+ Q+    K  S        L+
Sbjct: 64  AIRIAPYFES--VTALYGDVESKS----PANVWVALHSLEQIRRIPKGRSV------ELK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ--LERFRTL 185
           VDTG NR G+ ++E L     +   +   L  +++H    D+  S   S Q   E  R  
Sbjct: 112 VDTGMNRNGI-MEEELFVALEAIRAQGLILCGVMAHNGYGDELGSEFFSQQRRFEGVRAR 170

Query: 186 ISHYKGIEASLA-------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP------- 231
           +  Y   E  L        SSSG L   N    L R GI++YG       +HP       
Sbjct: 171 VEEY-AREHGLPRPRFHALSSSGALRSRNIQDDLVRFGIAIYGYLC----AHPLVVSEIG 225

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGY 279
           ++ V++  AR I  +    G  + YGG+ +L  ++  ++   +GY DG+
Sbjct: 226 LRPVLSLWARRITTKSLPKGARIGYGGKSELEEEAKKVSTYDVGYGDGF 274


>gi|213417243|ref|ZP_03350387.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 108

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%)

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           V YGG     RD+ + V A+GY DGYP          +PS   G    + G  VPI+G++
Sbjct: 2   VGYGGTWVSERDTRLGVVAMGYGDGYP--------RAAPS---GTPVLVNGREVPIVGRV 50

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L+ R+ +R A  Y
Sbjct: 51  AMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRLTSRVAMKY 106


>gi|257469979|ref|ZP_05634071.1| alanine racemase [Fusobacterium ulcerans ATCC 49185]
          Length = 357

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 137/314 (43%), Gaps = 34/314 (10%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL--RLYTPQARIFVLYGIHPGQEK 92
           V+K NAYG   E ++  LY+ G ++F V  + E  K+        +RI V   I      
Sbjct: 37  VLKANAYGHSIEMVSEILYDNGYREFAVARLNEAEKILQNKKVTDSRILVFESIGREFFD 96

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
           ++   N I +  S   L    + +  G+S     L++D GF R G+ +QE ++       
Sbjct: 97  VVKSNNTIEI--SANTLAELKEFIENGISPDRIQLKIDFGFGRNGI-IQEDIENLKKYIE 153

Query: 152 KKLGQLSLIISHL-ACADDPSSHVNSVQLERFRTLISHYKGIEA----SLASSSGILLGP 206
           KK      I SHL A   D  + +    +E+F   +  Y G E      + +S GILL  
Sbjct: 154 KKNLSFKGIYSHLYAVEYDEGAEL----IEKFTETVK-YLGKERFQMIHIQNSVGILLYG 208

Query: 207 NYHFQL-TRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
           N       RPGI +YG  ++      ++ V   E +I  +R     + ++Y  +  L+ +
Sbjct: 209 NCDMMTHLRPGIYIYGLQEEGFFQEGLKQVFKLEGKIAGVRDVSKSKYLAYNLKTTLSEN 268

Query: 266 SL--IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
                A   IGY +G+        +E S  +  G     K Y + +   +TMD T  ++ 
Sbjct: 269 DFNYAAKIKIGYGEGFSKA-----NEKSCCLING-----KSYKILL---VTMDNTFIEVD 315

Query: 324 DSLSIEVGDYIQIF 337
           +  SI+ GD++ ++
Sbjct: 316 E--SIKEGDHVALY 327


>gi|254875861|ref|ZP_05248571.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254841882|gb|EET20296.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 321

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 131/318 (41%), Gaps = 43/318 (13%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           +VK NAYG+G E I     N  V  + +  ++E   L+       I  L GI+       
Sbjct: 3   IVKANAYGIGIENIYKVT-NDLVDAYGIARIDEYYVLKNLGCTKDIVFLSGIYAECFDFK 61

Query: 95  FDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL 154
              N+IP++S+V  +  Y K      S    L  D G  R G        F  + F K L
Sbjct: 62  IPKNVIPILSNVLLIKDYIKYED-DKSKQVMLDFDCGMGRFG--------FYRDDFIKHL 112

Query: 155 GQLSL-------IISHLACA----DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL 203
             L +       + SH+       D    +++ +       L++    ++ + ++S   L
Sbjct: 113 DMLKISGFSNIILFSHIPTGYNGYDRSKKYIDKI------LLLAEETKLKYTFSNSPVSL 166

Query: 204 LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
              ++  +  R   ++ G      +   ++  ++ +A II IR    GE +SYG +    
Sbjct: 167 FDTDFLQEYIRSSSAVLGYD---QEPKEIKFSLSLKACIISIRDIPKGEYISYGNEYFCN 223

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
           +D+ +A+  IGYADG    +      H  S  L     I     PIL  I MD    DI+
Sbjct: 224 KDTTVAILNIGYADGLGCEI------HHDSYLL-----INATKCPILS-INMDYLYVDIS 271

Query: 324 D-SLSIEVGDYIQIFGPD 340
                +++ D I++FGP+
Sbjct: 272 AIKHQLKMLDMIELFGPN 289


>gi|213023501|ref|ZP_03337948.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 110

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 15/113 (13%)

Query: 214 RPGISLYGGTDKINK----SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
           RPGI LYG +   +K        Q V++  + +I +R   AGE V YGG     RD+ + 
Sbjct: 2   RPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRLG 61

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
           V A+GY DGYP          +PS   G    + G  VPI+G++ MDM   D+
Sbjct: 62  VVAMGYGDGYP--------RAAPS---GTPVLVNGREVPIVGRVAMDMICVDL 103


>gi|153836908|ref|ZP_01989575.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
 gi|149749866|gb|EDM60611.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
          Length = 409

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 144/346 (41%), Gaps = 36/346 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL   K N     + +S   +  AV+K +AYG G   + P +    +    + S  E
Sbjct: 47  LEIDLGQFKQNIEQFKSHMSDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAIASNAE 106

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPY 124
              +R    + ++  +     G+ +   D N+  +I ++ Q   +   SK  +  V    
Sbjct: 107 AQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKANKTVKVHL 166

Query: 125 ALQVDTGFNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNS 176
           AL  D G  R G+ +      +EAL     S  + +G    I++H     A++  + + S
Sbjct: 167 ALN-DGGMGRNGIDMTTENGKKEALAIAKQSGVEIVG----IMTHFPNYNAEEVRAKLGS 221

Query: 177 VQLERFRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
            + E    LI       + I   +A+S   L  P     + RPG  LYG     N  +P 
Sbjct: 222 FK-ESSAWLIKEANLKREDILLHVANSYTALNVPEAQLDMVRPGGVLYGDL-PTNLEYP- 278

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            ++V+ + R+  +        V Y      T++S++A   +GY+DGYP  +         
Sbjct: 279 -SIVSFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNT------ 331

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                    I G    ++G  +M+ TM D++D   ++ G  + +FG
Sbjct: 332 -----ADVLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFG 372


>gi|319955971|ref|YP_004167234.1| alanine racemase [Nitratifractor salsuginis DSM 16511]
 gi|319418375|gb|ADV45485.1| alanine racemase [Nitratifractor salsuginis DSM 16511]
          Length = 335

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 135/320 (42%), Gaps = 58/320 (18%)

Query: 18  NNWHSMNALSGNA----RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           N +H++N L+  A    R A V+KDNAYG G   +     + G+++  V + +E      
Sbjct: 10  NFYHNLNQLALKAGSKDRLAVVLKDNAYGHGLRLMGELSRDYGIREAVVVTNDEA----- 64

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA------LQ 127
                           Q   +FD  L+   S  P       +   G+           L+
Sbjct: 65  ---------------DQISDLFDHILVLGDSPRPSSRCSYAVSEIGLLRWIEPGVLIELK 109

Query: 128 VDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF-- 182
           VDTG +R G+    L+EAL+       K+  +L  +I+H   AD+ +S     Q +RF  
Sbjct: 110 VDTGMHRNGIEPERLEEALEI----IRKRKLRLFGVITHYRSADELTSEY-FWQKKRFDE 164

Query: 183 ---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVT 237
              R + + +        +S+ +L   N+   + R GI++YG     K  +   ++ V++
Sbjct: 165 VKKRVIDAGFSETRFHSHNSAALLRCRNFDEDIARVGIAIYGYNTLPKGFEGVELKPVLS 224

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             AR    R+   G  + YGG+    R+  ++   +GY DG+P    G  SE  P     
Sbjct: 225 LWARRASTRRLQEGARIGYGGEFTADREMPVSTYDLGYGDGWP---RGRASE--PYRTAE 279

Query: 298 GKGFIKGYMVPILGKITMDM 317
           GK         ILG+++MD 
Sbjct: 280 GKA--------ILGRVSMDF 291


>gi|313683296|ref|YP_004061034.1| alanine racemase [Sulfuricurvum kujiense DSM 16994]
 gi|313156156|gb|ADR34834.1| alanine racemase [Sulfuricurvum kujiense DSM 16994]
          Length = 338

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 140/350 (40%), Gaps = 63/350 (18%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           + G  + A V+KDNAYG G   IA      GV+   V    E  ++  Y     I     
Sbjct: 22  VGGKDKIAVVLKDNAYGHGAVLIAQTASEYGVKQAVVRLEREAEEIVRYFDNVLIL---- 77

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL---SLQEA 142
              GQ+      +    I+S+ ++  Y             L++DTG +R G+    L+EA
Sbjct: 78  ---GQKPTQVHPHFSYAINSLEEIAQYPS------GARVELKIDTGMHRNGVFPEQLEEA 128

Query: 143 LDFTHNSFNKKLGQLSLI----ISHLACADDPSSH-------VNSVQLERFRTLISHY-K 190
            +        K+ Q  LI    +SH   AD  SS         ++ ++ R   L   Y  
Sbjct: 129 FE--------KIAQRGLICVGLMSHFRAADTLSSEWFWQRKIFDATKI-RASALAKKYGW 179

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTVVTAEARIILIRKA 248
            +   +++S+G          + R GI+LYG    DK  +   +Q+V++     I  R  
Sbjct: 180 SLRFHISNSAGAFRSAECSDDMVRVGIALYGCLEMDKTLEQPELQSVLSLWGDKIATRVL 239

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            AGE V Y G  +   D +I+   +GYA+       GLD        L    ++    + 
Sbjct: 240 KAGERVGYNGIYEAQSDEVISTYDLGYAN-------GLDR-------LASNRYVTPEGIE 285

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           + G+I+MD   F          GD  Q+   D   +D A   GT  Y++L
Sbjct: 286 LRGRISMDSASF---------AGDAEQLMIFD-NANDYARIVGTIGYEIL 325


>gi|328470761|gb|EGF41672.1| alanine racemase [Vibrio parahaemolyticus 10329]
          Length = 409

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 144/346 (41%), Gaps = 36/346 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL   K N     + +S   +  AV+K +AYG G   + P +    +    + S  E
Sbjct: 47  LEVDLGQFKQNIEQFKSHMSDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAIASNAE 106

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPY 124
              +R    + ++  +     G+ +   D N+  +I ++ Q   +   SK  +  V    
Sbjct: 107 AQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKANKTVKVHL 166

Query: 125 ALQVDTGFNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNS 176
           AL  D G  R G+ +      +EAL     S  + +G    I++H     A++  + + S
Sbjct: 167 ALN-DGGMGRNGIDMTTENGKKEALAIAKQSGVEIVG----IMTHFPNYNAEEVRAKLGS 221

Query: 177 VQLERFRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
            + E    LI       + I   +A+S   L  P     + RPG  LYG     N  +P 
Sbjct: 222 FK-ESSAWLIEKANLKREDILLHVANSYTALNVPEAQLDMVRPGGVLYGDL-PTNLEYP- 278

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            ++V+ + R+  +        V Y      T++S++A   +GY+DGYP  +         
Sbjct: 279 -SIVSFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNT------ 331

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                    I G    ++G  +M+ TM D++D   ++ G  + +FG
Sbjct: 332 -----ADVLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFG 372


>gi|260901465|ref|ZP_05909860.1| alanine racemase [Vibrio parahaemolyticus AQ4037]
 gi|308107691|gb|EFO45231.1| alanine racemase [Vibrio parahaemolyticus AQ4037]
          Length = 409

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 144/346 (41%), Gaps = 36/346 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL   K N     + ++   +  AV+K +AYG G   + P +    +    + S  E
Sbjct: 47  LEIDLGQFKQNIEQFKSHMNDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAIASNAE 106

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPY 124
              +R    + ++  +     G+ +   D N+  +I ++ Q   +   SK  +  V    
Sbjct: 107 AQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKTNKTVKVHL 166

Query: 125 ALQVDTGFNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNS 176
           AL  D G  R G+ +      +EAL     S  + +G    I++H     A++  + + S
Sbjct: 167 ALN-DGGMGRNGIDMTTENGKKEALAIAKQSGVEIVG----IMTHFPNYNAEEVRAKLGS 221

Query: 177 VQLERFRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
            + E    LI       + I   +A+S   L  P     + RPG  LYG     N  +P 
Sbjct: 222 FK-ESSAWLIKEADLKRENILLHVANSYTALNVPEAQLDMVRPGGVLYGDL-PTNLEYP- 278

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            ++V+ + R+  +        V Y      T++S++A   +GY+DGYP  +         
Sbjct: 279 -SIVSFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNT------ 331

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                    I G    ++G  +M+ TM D++D   ++ G  + +FG
Sbjct: 332 -----ADVLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFG 372


>gi|297578895|ref|ZP_06940823.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536489|gb|EFH75322.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 428

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 157/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + ++ N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +     D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARAVRESGFKGELIRVRSASLSEMSAALDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRLSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|167626729|ref|YP_001677229.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167596730|gb|ABZ86728.1| Alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 351

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 141/344 (40%), Gaps = 43/344 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+   +K+N   +   + +++   +VK NAYG+G E I     N  V  + +  +EE 
Sbjct: 7   VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGVGIENIYKVTNNL-VDAYGIARIEEY 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             L+       I  L GI+          N+IP++ +   +  Y K      S    L  
Sbjct: 66  YVLKNLGCTKDIVFLSGIYAECFNFKIPKNVIPILGNELLIKDYIKYED-DKSKQVMLDF 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLS-------LIISHLACA----DDPSSHVNSV 177
           D G  R G        F  + F K L  L        ++ SH+       D    ++N +
Sbjct: 125 DCGMGRFG--------FYRDDFIKHLDTLKSSGFSNIILFSHIPTGYNGYDKAKKYINKI 176

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
                   ++    ++ + ++S   L   ++  +  R   ++ G      +   ++  ++
Sbjct: 177 ------LSLAEETKLKYTFSNSPVSLFDTDFQQEYIRSSSAILGYD---QEPKEIKFSLS 227

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +A II IR    GE +SYG +    +++ +A+  IGYADG    +      H  S  L 
Sbjct: 228 LKACIISIRDIPKGEYISYGNEYFCNKNTTVAILNIGYADGLGCEI------HHDSYLL- 280

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD 340
               IK    PIL  I MD    DI+     +++ D I++F P+
Sbjct: 281 ----IKATKCPILS-INMDYLYVDISAIKQQLKMLDMIELFSPN 319


>gi|28900856|ref|NP_800511.1| alanine racemase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362532|ref|ZP_05775452.1| alanine racemase [Vibrio parahaemolyticus K5030]
 gi|260879223|ref|ZP_05891578.1| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|260896758|ref|ZP_05905254.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|34098472|sp|Q87HG4|ALR2_VIBPA RecName: Full=Alanine racemase 2
 gi|28809302|dbj|BAC62344.1| putative alanine racemase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087318|gb|EFO37013.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|308094088|gb|EFO43783.1| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|308115278|gb|EFO52818.1| alanine racemase [Vibrio parahaemolyticus K5030]
          Length = 409

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 144/346 (41%), Gaps = 36/346 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL   K N     + ++   +  AV+K +AYG G   + P +    +    + S  E
Sbjct: 47  LEIDLGQFKQNIEQFKSHMNDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAIASNAE 106

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPY 124
              +R    + ++  +     G+ +   D N+  +I ++ Q   +   SK  +  V    
Sbjct: 107 AQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKANKTVKVHL 166

Query: 125 ALQVDTGFNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNS 176
           AL  D G  R G+ +      +EAL     S  + +G    I++H     A++  + + S
Sbjct: 167 ALN-DGGMGRNGIDMTTENGKKEALAIAKQSGVEIVG----IMTHFPNYNAEEVRAKLGS 221

Query: 177 VQLERFRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
            + E    LI       + I   +A+S   L  P     + RPG  LYG     N  +P 
Sbjct: 222 FK-ESSAWLIKEANLKREDILLHVANSYTALNVPEAQLDMVRPGGVLYGDL-PTNLEYP- 278

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            ++V+ + R+  +        V Y      T++S++A   +GY+DGYP  +         
Sbjct: 279 -SIVSFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNT------ 331

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                    I G    ++G  +M+ TM D++D   ++ G  + +FG
Sbjct: 332 -----ADVLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFG 372


>gi|213615581|ref|ZP_03371407.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 187

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 19/190 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE ++
Sbjct: 8   INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADA--FGVARLEEALR 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS------SVPQLTFYSKLMSCGVSHPY 124
           LR       I +L G         FD   +P IS      +V      + L +  ++ P 
Sbjct: 66  LRAGGITQPILLLEG--------FFDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPV 117

Query: 125 A--LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +RLG+  +EA  F    +  K + Q   I+SH A AD+P       QL+ 
Sbjct: 118 TVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDI 177

Query: 182 FRTLISHYKG 191
           F        G
Sbjct: 178 FNAFCQGKPG 187


>gi|319892398|ref|YP_004149273.1| Putative diaminopimelate epimerase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162094|gb|ADV05637.1| Putative diaminopimelate epimerase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 359

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 145/343 (42%), Gaps = 41/343 (11%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARI 80
            ++  ++ N    AVVK+NAY  G +        AG+  F  TS+ E V++R   P+A I
Sbjct: 14  QNVKQVTQNQSVMAVVKNNAYNYGLDFAVQMFQQAGIDTFSTTSLVEAVRIRELAPEATI 73

Query: 81  FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ 140
           F++      +     D ++     ++P LTFY +  +        L+ +   +R G   +
Sbjct: 74  FLMNATDEFERLRANDIHM-----TLPSLTFYRENKAALAGVKVHLEYENLLHRSGFKTK 128

Query: 141 EAL-----DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-------- 187
           + L     D   N   K   +++ + +H   AD+    +   + E + T++         
Sbjct: 129 DELLAVLADHEQNPAPKM--EITGLWTHFGYADEFDVDMYEKEREAWLTIVETLVKQRGY 186

Query: 188 HYKGIEASLASSSGILLGPNY--HFQLTRPGISLYGGTDKINKSHPMQT-VVTAEARIIL 244
           H+  I A   S+S    G     H    R GI+LYG     + S    T  +T +A +I 
Sbjct: 187 HFDLIHAQ-NSASYYREGQRVFDHHTHARIGIALYGSRPYASLSPGCITQALTVKANVIQ 245

Query: 245 IRKALAGELVSYGGQKKLTR-DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           +R    G+   Y     + +  + +AV  +GY DG   T +  D      V + GK +  
Sbjct: 246 LRNVQQGDHCGYSFAYTVEQPHTRLAVVDVGYGDGILRTRAQHD------VSINGKRY-- 297

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDD 345
               PI   + M     ++ D++S +  D + ++   D+++DD
Sbjct: 298 ----PIRA-LMMSHMFVEVDDTVSAK--DSVILYNNSDLRIDD 333


>gi|226320650|ref|ZP_03796208.1| alanine racemase [Borrelia burgdorferi 29805]
 gi|226233866|gb|EEH32589.1| alanine racemase [Borrelia burgdorferi 29805]
          Length = 287

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 16/231 (6%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +   + 
Sbjct: 32  GEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILMYIKVD 91

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALD 144
             + K +    L+P +S    L    K   C +        L++D G NR G+ + +AL+
Sbjct: 92  KKEIKNLIKFELVPFVSDFEYLFLIEK--ECALQKNKIKVHLKIDIGMNRYGIKIDDALE 149

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLA--SSS 200
                 N K  +L  I SHL   ++  +     Q+E+F   +     K I       S+S
Sbjct: 150 IATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHISNS 207

Query: 201 GILLG--PNYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIR 246
           G ++    N  F + RPG+ LYG    +    P    + V++  +++I I+
Sbjct: 208 GHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIK 258


>gi|153951186|ref|YP_001398023.1| alanine racemase [Campylobacter jejuni subsp. doylei 269.97]
 gi|226711033|sp|A7H3E3|ALR_CAMJD RecName: Full=Alanine racemase
 gi|152938632|gb|ABS43373.1| alanine racemase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 328

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 151/363 (41%), Gaps = 57/363 (15%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N  H    +    R   V KDNAYG G + +AP   N GV   FV    E
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVS--FVAVKSE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y + +         L+
Sbjct: 62  EEAREIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKNYKQDIKI------HLK 111

Query: 128 VDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERF 182
           +DTG +R G+   +L+ A+D   +S  K    L+ + +H A AD  D S  V     ++ 
Sbjct: 112 IDTGMHRNGICVENLEHAIDLIRSSNLK----LTGMFTHFASADEMDGSFFVQKENFQKA 167

Query: 183 RTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + ++  Y   +     +S+ +  G     +  R G+  +G  D       ++ +++  A 
Sbjct: 168 KKMVKKYFSNLLFHSHNSAALFRGKIPEDEYCRIGLVQFGYGDS-----NLKRILSLYAH 222

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG- 300
            +  R    G+ + YGG     +D  +A   +GYADG                   GKG 
Sbjct: 223 RLSQRILQKGQSIGYGGIFTAVKDMEVATYDLGYADGL--------------FRYNGKGE 268

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIF-GPDIKLDDVALASGTTNYDLL 358
            + G    +LGK++M        DS S E  G+ I +F   DI  D       T NY++L
Sbjct: 269 LVLGNGKAMLGKMSM--------DSFSCENSGEEICVFKDADIWADFFH----TINYEIL 316

Query: 359 VRI 361
           V++
Sbjct: 317 VKL 319


>gi|153216974|ref|ZP_01950738.1| alanine racemase, putative [Vibrio cholerae 1587]
 gi|124114006|gb|EAY32826.1| alanine racemase, putative [Vibrio cholerae 1587]
          Length = 428

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 157/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + ++ N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +        V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRVSSLHHVPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|229515688|ref|ZP_04405147.1| alanine racemase [Vibrio cholerae TMA 21]
 gi|229347457|gb|EEO12417.1| alanine racemase [Vibrio cholerae TMA 21]
          Length = 428

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 157/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + ++ N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                ++V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTIKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +        V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRVSSLHHVPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|86152054|ref|ZP_01070266.1| alanine racemase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315124401|ref|YP_004066405.1| alanine racemase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|85840839|gb|EAQ58089.1| alanine racemase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018123|gb|ADT66216.1| alanine racemase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 328

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 151/363 (41%), Gaps = 57/363 (15%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N  H    +    R   V KDNAYG G + +AP   N GV   FV    E
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVS--FVAVKSE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y + +         L+
Sbjct: 62  EEAQEIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKKYKQDIKI------HLK 111

Query: 128 VDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERF 182
           +DTG +R G+   +L+ A+D   +S  K    L+ + +H A AD  D S  V     ++ 
Sbjct: 112 IDTGMHRNGICVENLEHAIDLIQSSDLK----LTGMFTHFASADEMDGSFFVQKENFQKA 167

Query: 183 RTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + ++  Y   +     +S+ +  G     +  R G+  +G  D       ++ V++  A 
Sbjct: 168 KKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKKVLSLYAH 222

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG- 300
            +  R    G+ + YGG     +D  +A   +GYADG                   GKG 
Sbjct: 223 RLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGL--------------FRYNGKGE 268

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIF-GPDIKLDDVALASGTTNYDLL 358
            + G    +LGK++M        DS S E  G+ I +F   DI  D       T NY++L
Sbjct: 269 LVLGNGKVMLGKMSM--------DSFSCENSGEEICVFKDADIWADFFH----TINYEIL 316

Query: 359 VRI 361
           V++
Sbjct: 317 VKL 319


>gi|86153256|ref|ZP_01071460.1| alanine racemase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|121613298|ref|YP_001000580.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005511|ref|ZP_02271269.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|226711034|sp|A1VZN9|ALR_CAMJJ RecName: Full=Alanine racemase
 gi|85842982|gb|EAQ60193.1| alanine racemase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87249470|gb|EAQ72430.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 328

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 151/363 (41%), Gaps = 57/363 (15%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N  H    +    R   V KDNAYG G + +AP   N GV   FV    E
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVS--FVAVKSE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y + +         L+
Sbjct: 62  EEAQEIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKKYKQDIKI------HLK 111

Query: 128 VDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERF 182
           +DTG +R G+   +L+ A+D   +S  K    L+ + +H A AD  D S  V     ++ 
Sbjct: 112 IDTGMHRNGICVENLEHAIDLIRSSDLK----LTGMFTHFASADEMDGSFFVQKENFQKA 167

Query: 183 RTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + ++  Y   +     +S+ +  G     +  R G+  +G  D       ++ V++  A 
Sbjct: 168 KKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKKVLSLYAH 222

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG- 300
            +  R    G+ + YGG     +D  +A   +GYADG                   GKG 
Sbjct: 223 RLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGL--------------FRYNGKGE 268

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIF-GPDIKLDDVALASGTTNYDLL 358
            + G    +LGK++M        DS S E  G+ I +F   DI  D       T NY++L
Sbjct: 269 LVLGNGKVMLGKMSM--------DSFSCENSGEEICVFKDADIWADFFH----TINYEIL 316

Query: 359 VRI 361
           V++
Sbjct: 317 VKL 319


>gi|254458882|ref|ZP_05072306.1| alanine racemase [Campylobacterales bacterium GD 1]
 gi|207084648|gb|EDZ61936.1| alanine racemase [Campylobacterales bacterium GD 1]
          Length = 333

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 149/345 (43%), Gaps = 61/345 (17%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90
           + A V+KDNAYG G  ++A      GV+   V S +E   +  +     I VL  I P +
Sbjct: 27  KIAIVLKDNAYGHGISEMASLAKEYGVKKAVVRSNDEAKSIEEFFEY--ILVLGDI-PKE 83

Query: 91  --EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
              K+ +  N I  IS  P+ T               L+VDTG +R G+S+ E     H+
Sbjct: 84  PSSKMRYTINDIKSISKFPKETLVE------------LKVDTGMHRNGISMSE----LHD 127

Query: 149 SFN--KKLGQ-LSLIISHLACADDPSSHVNSVQLERFRTLISH---------YKGIEASL 196
           +F   K+ G  L  + +H   +D+ +S     Q + F+ +            +  +    
Sbjct: 128 AFMQIKEAGLILEAVFTHHRSSDELTSEW-FWQNDNFKKVKQEAAYLAEEFGFGSLRFHS 186

Query: 197 ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSY 256
           A+S+ +    ++   + R GI+ YG  +      P   V++  A  I  R+   G+ V Y
Sbjct: 187 ANSASLFRTDSFDEDMARVGIASYGCLEGYEGFAP---VLSLYADKISSREVKRGQRVGY 243

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           GG      + +++    GY DG+          +S + F+   G      V  +G+I+MD
Sbjct: 244 GGTFVAKDNCVVSNYDFGYGDGFL--------RNSSNEFVTSNG------VEQVGRISMD 289

Query: 317 MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            + F IT+       + + IF   I   D A ++GT +Y++L  +
Sbjct: 290 NSSF-ITNE------ENLLIFNNAI---DAAKSAGTISYEILTSL 324


>gi|157415162|ref|YP_001482418.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81116]
 gi|226711032|sp|A8FLV4|ALR_CAMJ8 RecName: Full=Alanine racemase
 gi|157386126|gb|ABV52441.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747805|gb|ADN91075.1| Alanine racemase [Campylobacter jejuni subsp. jejuni M1]
 gi|315932613|gb|EFV11544.1| alanine racemase [Campylobacter jejuni subsp. jejuni 327]
          Length = 328

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 151/363 (41%), Gaps = 57/363 (15%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N  H    +    R   V KDNAYG G + +AP   N GV   FV    E
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVS--FVAVKSE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y + +         L+
Sbjct: 62  EEAQEIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKKYKQDIKI------HLK 111

Query: 128 VDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERF 182
           +DTG +R G+   +L+ A+D   +S  K    L+ + +H A AD  D S  V     ++ 
Sbjct: 112 IDTGMHRNGICVENLEHAIDLIRSSDLK----LTGMFTHFASADEMDGSFFVQKENFQKA 167

Query: 183 RTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + ++  Y   +     +S+ +  G     +  R G+  +G  D       ++ V++  A 
Sbjct: 168 KKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAH 222

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG- 300
            +  R    G+ + YGG     +D  +A   +GYADG                   GKG 
Sbjct: 223 RLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGL--------------FRYNGKGE 268

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIF-GPDIKLDDVALASGTTNYDLL 358
            + G    +LGK++M        DS S E  G+ I +F   DI  D       T NY++L
Sbjct: 269 LVLGNGKVMLGKMSM--------DSFSCENSGEEICVFKDADIWADFFH----TINYEIL 316

Query: 359 VRI 361
           V++
Sbjct: 317 VKL 319


>gi|16417160|gb|AAL18607.1|AF384669_1 alanine racemase [Francisella novicida]
          Length = 210

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 29/193 (15%)

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSSGILLGPNYHFQL 212
           L  + SHLACAD+     N  Q  RF +++   KG+       L++S G L      + +
Sbjct: 12  LEGVYSHLACADNRDHPTNIKQKNRFDSIVEFTKGLSQDIICHLSNSYGFLGQKGICYDM 71

Query: 213 TRPGISLYGGTDK------INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDS 266
            RPGI  YG   +      I +  P+  +++   +II +++   GE V Y    +     
Sbjct: 72  VRPGILSYGFLPEFYVDRVIREIKPIARLLSKVVKIITLQE---GEGVGYSLIYRGFEGE 128

Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF--IKGYMVPILGKITMD-MTMFDIT 323
            +AV  IGY DG+P               LG +GF  I   M P+ G+++MD +T+    
Sbjct: 129 QLAVIPIGYGDGFPRE-------------LGDRGFVNINDVMYPMAGRMSMDGLTVSLGI 175

Query: 324 DSLSIEVGDYIQI 336
           +   ++V D +++
Sbjct: 176 NEYDVKVSDTVEL 188


>gi|254372286|ref|ZP_04987777.1| hypothetical protein FTCG_01352 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254373765|ref|ZP_04989248.1| hypothetical protein FTDG_01549 [Francisella novicida GA99-3548]
 gi|151570015|gb|EDN35669.1| hypothetical protein FTCG_01352 [Francisella novicida GA99-3549]
 gi|151571486|gb|EDN37140.1| hypothetical protein FTDG_01549 [Francisella novicida GA99-3548]
          Length = 321

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 131/317 (41%), Gaps = 41/317 (12%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           +VK NAYG+G E I     N  V  + +  +EE   L+       I  L GI+       
Sbjct: 3   IVKANAYGIGIENIYKVT-NDLVDAYGIARIEEYYVLKSLGCTKDIVFLSGIYAECFDFK 61

Query: 95  FDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL 154
              N+IP++ +   +  Y K      S    L  D G  R G        F  + F K L
Sbjct: 62  IPKNVIPILGNELLIKDYIKYED-DKSKQVMLDFDCGMGRFG--------FYRDDFIKHL 112

Query: 155 GQLS-------LIISHLACADDPSSHVNSVQLERFRT---LISHYKGIEASLASSSGILL 204
             +        ++ SH+     P+ +    + +R+     L++    ++ + ++S   L 
Sbjct: 113 DTIKSSGFSNIILFSHI-----PTGYNGYDRSKRYIDKILLLAEETKLKYTFSNSPVSLF 167

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
             ++  +  R   ++ G      +   ++  ++ +A II IR    GE +SYG +    +
Sbjct: 168 DTDFQQEYIRSSSAVLGYD---QEPKEIKFSLSLKACIISIRDIPKGEYISYGNEYFCNK 224

Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324
           D+ +A+  IGYADG    +      H  S  L     I     PIL  I MD    DI+ 
Sbjct: 225 DTTVAILNIGYADGLGCEI------HHDSYLL-----INATKCPILS-INMDYLYVDISA 272

Query: 325 -SLSIEVGDYIQIFGPD 340
               +++ D I++FGP+
Sbjct: 273 IKHQLKMLDMIELFGPN 289


>gi|57237734|ref|YP_178982.1| alanine racemase [Campylobacter jejuni RM1221]
 gi|81819521|sp|Q5HUQ3|ALR_CAMJR RecName: Full=Alanine racemase
 gi|57166538|gb|AAW35317.1| alanine racemase [Campylobacter jejuni RM1221]
 gi|315058345|gb|ADT72674.1| Alanine racemase [Campylobacter jejuni subsp. jejuni S3]
          Length = 328

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 150/363 (41%), Gaps = 57/363 (15%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N  H    +    R   V KDNAYG G + +AP   N GV   FV    E
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVS--FVAVKSE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q   Y + +         L+
Sbjct: 62  EEAQEIEEFFENILILSHRPHGNE----NSRFIYALNDISQAKKYKQDIKI------HLK 111

Query: 128 VDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERF 182
           +DTG +R G+   +L+ A+D   +S  K    L+ + +H A AD  D S  V     ++ 
Sbjct: 112 IDTGMHRNGICVENLEHAIDLIQSSDLK----LTGMFTHFASADEMDGSFFVQKENFQKA 167

Query: 183 RTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + ++  Y   +     +S+ +  G     +  R G+  +G  D       ++ V++  A 
Sbjct: 168 KKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAH 222

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG- 300
            +  R    G+ + YGG     +D  +A   +GYADG                   GKG 
Sbjct: 223 RLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGL--------------FRYNGKGE 268

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIF-GPDIKLDDVALASGTTNYDLL 358
            + G    +LGK++M        DS S E  G+ I +F   DI  D       T NY++L
Sbjct: 269 LVLGNGKVMLGKMSM--------DSFSCENSGEEICVFKDADIWADFFH----TINYEIL 316

Query: 359 VRI 361
           V++
Sbjct: 317 VKL 319


>gi|88800370|ref|ZP_01115936.1| alanine racemase [Reinekea sp. MED297]
 gi|88776947|gb|EAR08156.1| alanine racemase [Reinekea sp. MED297]
          Length = 369

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 148/359 (41%), Gaps = 40/359 (11%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
           +A   AV+K +AYG G  ++A  +    ++   +TS  E   +R    +  I  L    P
Sbjct: 32  HAEFCAVLKADAYGHGIAEVAAIVCEHRIKTVGITSNAEARLVREAGFEGTILRLRTATP 91

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT---GFNRLGLSLQEALDF 145
            +        +   +SS+    + ++++     H   + +     G +R GL L E    
Sbjct: 92  SEIAGAVADRVQEQVSSL----YTAEVIDSLTEHSEGVHLAINAGGMSRDGLELNER--D 145

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQL--ERFRTLIS--------HYKGIEAS 195
            H++  + +  L   I  + C   PS     +QL  + FR+ ++          + +   
Sbjct: 146 GHDTCQRIVDLLGDRIVGI-CTHHPSGSEQDLQLSDQHFRSDLNWIFSNTALKREQVNVH 204

Query: 196 LASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEARIILIRKALAGELV 254
             SS  ++          R G  LYG    ++   H MQ     +A+I  I     G  +
Sbjct: 205 AGSSLSLISSTPIETDFYRCGAILYGILKPELGFEHTMQL----KAQITNITTYPQGSTI 260

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            Y     LTRDS +A  A+GYA+G+             + F      I+G +VP+LGK++
Sbjct: 261 GYDRTTTLTRDSRVANIALGYANGF-----------RRNYFGRSHVLIRGQLVPVLGKVS 309

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           M+  + D+TD   +EV D + IFG      I +  + + + T   D+    G R  + Y
Sbjct: 310 MNTIVADVTDIPVVEVEDEVVIFGHQGTGKIDIKRIEMQADTIMADIYAEWGQRNPRVY 368


>gi|261210961|ref|ZP_05925251.1| alanine racemase [Vibrio sp. RC341]
 gi|260839936|gb|EEX66536.1| alanine racemase [Vibrio sp. RC341]
          Length = 335

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 133/347 (38%), Gaps = 54/347 (15%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF 95
           +K +AYG G   + P +   G+    V S  E   +R    +  +  +      +   + 
Sbjct: 1   MKADAYGNGIRGLMPTIIAQGIPCVGVASNAEARAVRESGFKGELMRVRSASLSEMSAVL 60

Query: 96  DTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155
           D N+  +I +  Q     +L          ++V    N  G+  +  +D T  +  K+  
Sbjct: 61  DLNIEELIGTHQQAM---ELADLAKKTGKTIKVHMALNDGGMG-RNGIDMTTEAGKKEA- 115

Query: 156 QLSLIISHLACADDPS-------SHVNSVQLERFRTLISHYKGIEASLASSSGI------ 202
                   L+ A  PS       +H  +   +  RT ++ +K   A L   S +      
Sbjct: 116 --------LSIATQPSLNIVGMMTHFPNYNADEVRTKLAKFKESSAWLIEQSNLKREDIT 167

Query: 203 ---------LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGEL 253
                    L  P     + RPG  LYG     N  +P  ++V+ + R+  +     G  
Sbjct: 168 LHVANSYTALNVPEAQLDMVRPGGVLYGDL-PTNPEYP--SIVSFKTRVASLHHVPKGST 224

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG--FIKGYMVPILG 311
           V Y      +RDS++A   +GY+DGYP               +G K    + G    ++G
Sbjct: 225 VGYDSTFTTSRDSVLANLPVGYSDGYPRK-------------MGNKADVLVNGQRAKVVG 271

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             +M+ T+ D+TD   +  G  + ++G   K   +A++    N +L+
Sbjct: 272 VTSMNTTVVDVTDIKGVLPGQEVALYGQQQK-QSIAVSEMENNAELI 317


>gi|325846728|ref|ZP_08169643.1| putative alanine racemase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481486|gb|EGC84527.1| putative alanine racemase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 177

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 19/167 (11%)

Query: 207 NYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAE--ARIILIRKALAGELVSYGGQKKL 262
           N+   L R GI +YG   +D I +   ++     E  A+I  I+    G  +SYG     
Sbjct: 13  NFKSDLLRLGIGIYGIYPSDYIREISKIKLCQAFEFKAQISFIKDVRKGTSISYGRTYIA 72

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
            +D  +A  ++GYADG+  + S             G+  + G +  ++G++ MD  M D+
Sbjct: 73  PKDIKVATVSVGYADGFKRSFSNT-----------GEVLVNGKIAKVVGRVCMDQIMVDV 121

Query: 323 TDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  +  ++GDYI ++ PDI  +  A    T  Y+L+  I  R  + Y
Sbjct: 122 S-GIDCKIGDYITLY-PDIYKE--ANKIHTIAYELMTSISNRVPRIY 164


>gi|148926587|ref|ZP_01810269.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205356390|ref|ZP_03223155.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|145845281|gb|EDK22375.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205345775|gb|EDZ32413.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 328

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 148/360 (41%), Gaps = 51/360 (14%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N  H    +    R   V KDNAYG G + +AP   N GV   FV    E
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVS--FVAVKSE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y + +         L+
Sbjct: 62  EEAREIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKNYKQDIKI------HLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERFRTL 185
           +DTG +R G+ + E L+   N       +L+ + +H A AD  D S  V     ++ + +
Sbjct: 112 IDTGMHRNGICV-ENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQKENFQKAKKI 170

Query: 186 ISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           +  Y   +     +S+ +  G     +  R G+  +G  D       ++ V++  A  + 
Sbjct: 171 VKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRLS 225

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG-FIK 303
            R    G+ + YGG     +D  +A   +GYADG                   GKG  + 
Sbjct: 226 QRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGL--------------FRYNGKGELVL 271

Query: 304 GYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIF-GPDIKLDDVALASGTTNYDLLVRI 361
           G    +LGK++M        DS S E  G+ I +F   DI  D       T NY++LV++
Sbjct: 272 GNGKTMLGKMSM--------DSFSCENSGEEICVFKDADIWADFFH----TINYEILVKL 319


>gi|20137517|sp|Q9KSE5|ALR2_VIBCH RecName: Full=Alanine racemase 2
          Length = 392

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 42/382 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L   ++N     + ++ N +  A++K +AYG G   + P +   G+    V S  E
Sbjct: 30  LEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNAE 89

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +      +     D N+  +I +  Q    ++L          L+
Sbjct: 90  ARAVRESGFKGELIRVRSASLSEMSSALDLNIEELIGTHQQALDLAELAK---QSGKTLK 146

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSSHVNSVQL 179
           V    N  G+  +  +D T  +  K+      Q SL    I++H    +         Q 
Sbjct: 147 VHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQF 205

Query: 180 ERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N  +P  +
Sbjct: 206 KESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTNPEYP--S 262

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +V+ + R+  +        V Y      +RDS++A   +GY+DGYP              
Sbjct: 263 IVSFKTRVSSLHHLPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK------------ 310

Query: 295 FLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   +A++   
Sbjct: 311 -MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QSIAVSEME 368

Query: 353 TNYDLL-----VRIGTRYAKFY 369
            N +L+        GT   +FY
Sbjct: 369 NNAELIFPELYTLWGTSNPRFY 390


>gi|161582006|ref|NP_230956.2| alanine racemase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|255745708|ref|ZP_05419656.1| alanine racemase [Vibrio cholera CIRS 101]
 gi|262159017|ref|ZP_06030129.1| alanine racemase [Vibrio cholerae INDRE 91/1]
 gi|262169374|ref|ZP_06037066.1| alanine racemase [Vibrio cholerae RC27]
 gi|255736783|gb|EET92180.1| alanine racemase [Vibrio cholera CIRS 101]
 gi|262022187|gb|EEY40896.1| alanine racemase [Vibrio cholerae RC27]
 gi|262029202|gb|EEY47854.1| alanine racemase [Vibrio cholerae INDRE 91/1]
          Length = 407

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 42/382 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L   ++N     + ++ N +  A++K +AYG G   + P +   G+    V S  E
Sbjct: 45  LEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNAE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +      +     D N+  +I +  Q    ++L          L+
Sbjct: 105 ARAVRESGFKGELIRVRSASLSEMSSALDLNIEELIGTHQQALDLAELAK---QSGKTLK 161

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSSHVNSVQL 179
           V    N  G+  +  +D T  +  K+      Q SL    I++H    +         Q 
Sbjct: 162 VHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQF 220

Query: 180 ERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N  +P  +
Sbjct: 221 KESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTNPEYP--S 277

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +V+ + R+  +        V Y      +RDS++A   +GY+DGYP              
Sbjct: 278 IVSFKTRVSSLHHLPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK------------ 325

Query: 295 FLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
            +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   +A++   
Sbjct: 326 -MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QSIAVSEME 383

Query: 353 TNYDLL-----VRIGTRYAKFY 369
            N +L+        GT   +FY
Sbjct: 384 NNAELIFPELYTLWGTSNPRFY 405


>gi|121586566|ref|ZP_01676352.1| alanine racemase, putative [Vibrio cholerae 2740-80]
 gi|121726850|ref|ZP_01680062.1| alanine racemase, putative [Vibrio cholerae V52]
 gi|147673980|ref|YP_001216876.1| alanine racemase [Vibrio cholerae O395]
 gi|153819283|ref|ZP_01971950.1| alanine racemase, putative [Vibrio cholerae NCTC 8457]
 gi|153822911|ref|ZP_01975578.1| alanine racemase, putative [Vibrio cholerae B33]
 gi|227081483|ref|YP_002810034.1| alanine racemase, putative [Vibrio cholerae M66-2]
 gi|229505102|ref|ZP_04394612.1| alanine racemase [Vibrio cholerae BX 330286]
 gi|229511228|ref|ZP_04400707.1| alanine racemase [Vibrio cholerae B33]
 gi|229518346|ref|ZP_04407790.1| alanine racemase [Vibrio cholerae RC9]
 gi|229608106|ref|YP_002878754.1| alanine racemase [Vibrio cholerae MJ-1236]
 gi|254848434|ref|ZP_05237784.1| alanine racemase [Vibrio cholerae MO10]
 gi|298498598|ref|ZP_07008405.1| alanine racemase [Vibrio cholerae MAK 757]
 gi|9655801|gb|AAF94470.1| alanine racemase, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549245|gb|EAX59277.1| alanine racemase, putative [Vibrio cholerae 2740-80]
 gi|121630754|gb|EAX63139.1| alanine racemase, putative [Vibrio cholerae V52]
 gi|126510186|gb|EAZ72780.1| alanine racemase, putative [Vibrio cholerae NCTC 8457]
 gi|126519563|gb|EAZ76786.1| alanine racemase, putative [Vibrio cholerae B33]
 gi|146315863|gb|ABQ20402.1| putative alanine racemase [Vibrio cholerae O395]
 gi|227009371|gb|ACP05583.1| alanine racemase, putative [Vibrio cholerae M66-2]
 gi|227013229|gb|ACP09439.1| alanine racemase, putative [Vibrio cholerae O395]
 gi|229345061|gb|EEO10035.1| alanine racemase [Vibrio cholerae RC9]
 gi|229351193|gb|EEO16134.1| alanine racemase [Vibrio cholerae B33]
 gi|229357325|gb|EEO22242.1| alanine racemase [Vibrio cholerae BX 330286]
 gi|229370761|gb|ACQ61184.1| alanine racemase [Vibrio cholerae MJ-1236]
 gi|254844139|gb|EET22553.1| alanine racemase [Vibrio cholerae MO10]
 gi|297542931|gb|EFH78981.1| alanine racemase [Vibrio cholerae MAK 757]
          Length = 428

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 156/389 (40%), Gaps = 44/389 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            SN +L  +I L   ++N     + ++ N +  A++K +AYG G   + P +   G+   
Sbjct: 61  QSNSWL--EISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCV 118

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V S  E   +R    +  +  +      +     D N+  +I +  Q    ++L     
Sbjct: 119 GVASNAEARAVRESGFKGELIRVRSASLSEMSSALDLNIEELIGTHQQALDLAELAK--- 175

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL----GQLSL----IISHLACADDPSS 172
                L+V    N  G+  +  +D T  +  K+      Q SL    I++H    +    
Sbjct: 176 QSGKTLKVHIALNDGGMG-RNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEV 234

Query: 173 HVNSVQLERFRTLI---SHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q +   T +   ++ K  E +L  A+S   L  P     + RPG  L+G     N
Sbjct: 235 RAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDL-PTN 293

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             +P  ++V+ + R+  +        V Y      +RDS++A   +GY+DGYP       
Sbjct: 294 PEYP--SIVSFKTRVSSLHHLPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRK----- 346

Query: 288 SEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                   +G K    I G    ++G  +M+ T+ D+T+   +  G  + +FG   K   
Sbjct: 347 --------MGNKAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQK-QS 397

Query: 346 VALASGTTNYDLL-----VRIGTRYAKFY 369
           +A++    N +L+        GT   +FY
Sbjct: 398 IAVSEMENNAELIFPELYTLWGTSNPRFY 426


>gi|283954466|ref|ZP_06371986.1| alanine racemase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794083|gb|EFC32832.1| alanine racemase [Campylobacter jejuni subsp. jejuni 414]
          Length = 328

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 49/359 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A ++N   +    GN  R   V KDNAYG G + +AP   N GV   FV    E
Sbjct: 4   IKIDQKAYEHNLRYIARKIGNFQRLICVFKDNAYGHGAKLLAPLAKNLGVS--FVAVKSE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y +           L+
Sbjct: 62  EEAQEIEEFFENILILSHRPHGNE----NSKFIYALNDISQIKDYKQ------GAKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----R 183
           +DTG +R G+   E L++          +L+ + +H A AD+ +     VQ E F    +
Sbjct: 112 IDTGMHRNGVC-TEDLEYAIGLIQSSNLKLTGMFTHFASADEMNGSF-FVQKENFQKAKK 169

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            +  ++  +     +S+ +L G     +  R G+  +G  D +N    ++ V++  A  +
Sbjct: 170 IVKKYFSNLLFHSHNSAALLRGNIPEDEYCRIGLVQFGYGD-LN----LKKVLSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R    G+ + YGG    T+D  +A   +GYADG                + G K  I 
Sbjct: 225 SQRVLRKGQSIGYGGIFTATKDLEVATYDLGYADGLFR-------------YSGKKELIL 271

Query: 304 GYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G    +LGK++M        DS S E  G+ I +F      D  A    T +Y++LV++
Sbjct: 272 GNGKIMLGKMSM--------DSFSCENSGEEICVFND---ADVWADFFHTISYEILVKL 319


>gi|283956250|ref|ZP_06373730.1| alanine racemase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791970|gb|EFC30759.1| alanine racemase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 328

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 148/360 (41%), Gaps = 51/360 (14%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N  H    +    R   V KDNAYG G + +AP   N GV   FV    E
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVS--FVAVKSE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y + +         L+
Sbjct: 62  EEAQEIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKKYKQDIKI------HLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERFRTL 185
           +DTG +R G+ + E L+   N       +L+ + +H A AD  D S  V     ++ + +
Sbjct: 112 IDTGMHRNGICV-ENLEHAINLIRSSDLKLTGMFTHFASADEMDGSFFVQKENFQKAKKI 170

Query: 186 ISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           +  Y   +     +S+ +  G     +  R G+  +G  +       ++ V++  A  + 
Sbjct: 171 VKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGES-----NLKRVLSLYAHRLS 225

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG-FIK 303
            R    G+ + YGG     +D  +A   +GYADG                   GKG  + 
Sbjct: 226 QRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGL--------------FRYNGKGELVL 271

Query: 304 GYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIF-GPDIKLDDVALASGTTNYDLLVRI 361
           G    ILGK++M        DS S E  G+ I +F   DI  D       T NY++LV++
Sbjct: 272 GNGKVILGKMSM--------DSFSCENSGEEICVFKDADIWADFFH----TINYEILVKL 319


>gi|157164787|ref|YP_001466519.1| alanine racemase [Campylobacter concisus 13826]
 gi|226711030|sp|A7ZCL1|ALR_CAMC1 RecName: Full=Alanine racemase
 gi|112800684|gb|EAT98028.1| alanine racemase [Campylobacter concisus 13826]
          Length = 337

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 150/347 (43%), Gaps = 55/347 (15%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
           G      V+KDNAYG G   IA      G+++  V S  E  ++        I +L  + 
Sbjct: 24  GKENVIVVLKDNAYGHGARLIASEAKKFGIKNCAVKSECEANEIADIFEN--ILILSHVP 81

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH 147
            G E   F T  I  I ++ ++   +K+          L +DTG +R GL + E LD+  
Sbjct: 82  TGDESAKF-TYAINDIDALLKIKENTKI---------NLAIDTGMHRNGLDISE-LDYAF 130

Query: 148 NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR-------TLISHYKGIEASL---A 197
               ++  +L    +H   +D+ ++    VQ E F         L   + GI+  +    
Sbjct: 131 EILARRNLELLGAYTHFRASDELNADY-FVQRENFSAAKAKILALCDEF-GIKKPIFHSH 188

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
           +S+ +        ++ R GI+ YG   + N S  ++ V++  A+ +  R   +G+ V YG
Sbjct: 189 NSAALERASEIKDEMVRVGIAQYGYA-QFNGSLNLKPVLSLWAKRVSRRVLKSGQSVGYG 247

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
            +     D  +A   +GY DG  L  +G          LG      G +  ILGKI+MD 
Sbjct: 248 AKFIAKDDINVATYDLGYGDGL-LRYNG----------LGELRLANGEL--ILGKISMD- 293

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS---GTTNYDLLVRI 361
             F   DS     G+++ +F      +D  + +   GT NYD+LV++
Sbjct: 294 -SFSCKDS-----GEWVCVF------EDANVWAEFFGTINYDILVKL 328


>gi|315929851|gb|EFV09014.1| alanine racemase [Campylobacter jejuni subsp. jejuni 305]
          Length = 328

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 148/360 (41%), Gaps = 51/360 (14%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N  H    +    R   V KDNAYG G + +AP   N GV   FV    E
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVS--FVAVKSE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y + +         L+
Sbjct: 62  EEAREIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKNYKQDIKI------HLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERFRTL 185
           +DTG +R G+ + E L+   N       +L+ + +H A AD  D S  V     ++ + +
Sbjct: 112 IDTGMHRNGICV-ENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQKENFQKAKKI 170

Query: 186 ISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           +  Y   +     +S+ +  G     +  R G+  +G  D       ++ V++  A  + 
Sbjct: 171 VKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRLS 225

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG-FIK 303
            R    G+ + YGG     +D  +A   +GYADG                   GKG  + 
Sbjct: 226 QRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGL--------------FRYNGKGELVL 271

Query: 304 GYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIF-GPDIKLDDVALASGTTNYDLLVRI 361
           G    +LGK++M        DS S E  G+ I +F   DI  D       T NY++LV++
Sbjct: 272 GNGKVMLGKMSM--------DSFSCENSGEEICVFKDADIWADFFH----TINYEILVKL 319


>gi|86150261|ref|ZP_01068488.1| alanine racemase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597602|ref|ZP_01100836.1| alanine racemase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562525|ref|YP_002344304.1| alanine racemase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|20137244|sp|Q9PP26|ALR_CAMJE RecName: Full=Alanine racemase
 gi|85839377|gb|EAQ56639.1| alanine racemase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190194|gb|EAQ94169.1| alanine racemase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360231|emb|CAL35026.1| alanine racemase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926139|gb|ADC28491.1| alanine racemase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927545|gb|EFV06878.1| alanine racemase [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 328

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 148/360 (41%), Gaps = 51/360 (14%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N  H    +    R   V KDNAYG G + +AP   N GV   FV    E
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVS--FVAVKSE 61

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y + +         L+
Sbjct: 62  EEAREIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKNYKQDIKI------HLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERFRTL 185
           +DTG +R G+ + E L+   N       +L+ + +H A AD  D S  V     ++ + +
Sbjct: 112 IDTGMHRNGICV-ENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQKENFQKAKKI 170

Query: 186 ISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           +  Y   +     +S+ +  G     +  R G+  +G  D       ++ V++  A  + 
Sbjct: 171 VKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRLS 225

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG-FIK 303
            R    G+ + YGG     +D  +A   +GYADG                   G+G  + 
Sbjct: 226 QRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGL--------------FRYNGRGELVL 271

Query: 304 GYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIF-GPDIKLDDVALASGTTNYDLLVRI 361
           G    +LGK++M        DS S E  G+ I +F   DI  D       T NY++LV++
Sbjct: 272 GNGKAMLGKMSM--------DSFSCENSGEEICVFKDADIWADFFH----TINYEILVKL 319


>gi|224419174|ref|ZP_03657180.1| alanine racemase [Helicobacter canadensis MIT 98-5491]
 gi|253828107|ref|ZP_04870992.1| alanine racemase [Helicobacter canadensis MIT 98-5491]
 gi|313142680|ref|ZP_07804873.1| alanine racemase [Helicobacter canadensis MIT 98-5491]
 gi|253511513|gb|EES90172.1| alanine racemase [Helicobacter canadensis MIT 98-5491]
 gi|313131711|gb|EFR49328.1| alanine racemase [Helicobacter canadensis MIT 98-5491]
          Length = 358

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 124/305 (40%), Gaps = 36/305 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNA---RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L+I+     +N+H +    G     + A V+KDNAYG G +++A     A +   FV + 
Sbjct: 4   LQINSQHFFSNYHQIAQFIGQENIHKIAIVLKDNAYGHGLKEMAQLAKEAKITTCFVKNT 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +E +++        I     +   +  ++ +   N+   ++S+  L  Y K         
Sbjct: 64  KEALEIAAMFRHITILYPQSLEDKEALQQCLKQDNIYFCVASLEALKLYPK------QTK 117

Query: 124 YALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L++++G NR G+    LQEA +      NK+  +L  + SH    DD  S   +   E
Sbjct: 118 IELEINSGMNRNGIQAQQLQEAFEII----NKRELELIGVFSHNGFGDDFGSEFYTQNNE 173

Query: 181 ------RFRTLISHY--KGIEASLASSSGILLGPNYHFQLT--------RPGISLYG--G 222
                 +   L + Y  K       SSSG L    Y+  L         R GI+ YG   
Sbjct: 174 FLMVKKKVLELCNQYSFKKPRFHFFSSSGALRAVRYNESLPLELQDDLFRIGIAFYGYLC 233

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            D       ++ + +  AR I       G  + YGG  +   D+L++   +GY DG    
Sbjct: 234 QDIRFCGLNVKPIASLWARKISTYFLKKGSRIGYGGVSETKEDTLVSSYDVGYGDGLFRL 293

Query: 283 LSGLD 287
             G++
Sbjct: 294 REGME 298


>gi|33596854|ref|NP_884497.1| alanine racemase, catabolic [Bordetella parapertussis 12822]
 gi|33573555|emb|CAE37547.1| alanine racemase, catabolic [Bordetella parapertussis]
          Length = 387

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 148/375 (39%), Gaps = 44/375 (11%)

Query: 11  IDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ID  A+ +N   +    G      R  A VK +AYG G   + P L  A      V  + 
Sbjct: 19  IDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRAA--DGIAVRHLH 76

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHP 123
           E  + R    +  I V  G+ H  +  ++    L  VI+ + QL +     L +C    P
Sbjct: 77  EAHQCRRVGWRGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYACA---P 133

Query: 124 YALQVDTGFNRLG--------LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           +      G  RLG         +     +   +   + +G L+   +  +  D    H +
Sbjct: 134 WVWLRYIGATRLGGLDAGEYRRAYARCRELQQHGALRGVGHLNHYANAASVGDLEREHAD 193

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ--LTRPGISLYGGTD---KINKSH 230
                 F   I    G  ++  S++  ++ P    +    RPG++LYG +    ++ +  
Sbjct: 194 ------FEACIRGLPGPVSTCNSAASCVM-PTMAARTDWVRPGLALYGVSPIPGRVGRDL 246

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +T  + +   +   AG  V YG      +   + +   GY DGYP         H
Sbjct: 247 GLRPAMTLRSTLCATQNLPAGASVGYGCAFVADQPMALGLVRCGYGDGYP---------H 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALA 349
           +P      +  + G +   +G+I+MD+   D+    +   G  + ++G P + ++ +A A
Sbjct: 298 NPRASFPVQ--VDGVLTRTVGRISMDLMAVDLRPIPAAARGAPVVLWGSPQLPVEHIAHA 355

Query: 350 SGTTNYDLLVRIGTR 364
           +GT   +LL  +  R
Sbjct: 356 AGTIAAELLTGLTAR 370


>gi|154174920|ref|YP_001408670.1| alanine racemase [Campylobacter curvus 525.92]
 gi|226711031|sp|A7GZM8|ALR_CAMC5 RecName: Full=Alanine racemase
 gi|112802113|gb|EAT99457.1| alanine racemase [Campylobacter curvus 525.92]
          Length = 337

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 146/351 (41%), Gaps = 55/351 (15%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83
           N   G  R   V+KDNAYG G + IA A    G++   V S  E ++++      +I +L
Sbjct: 20  NKAGGKERVMLVLKDNAYGHGAKLIAAAASEFGIKFCAVKSQSEALEIQRNFE--KILIL 77

Query: 84  YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEAL 143
             I  G E    D N I  I+ +  L    +           L +DT  +R GL   E L
Sbjct: 78  SHIANGDE----DQNFIYAINDMKGLNRIKR------GTRIHLVIDTNMHRNGLKFSE-L 126

Query: 144 DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL 203
           +       ++   L    +H   +D+ ++    VQ + F+   +    +    A    I 
Sbjct: 127 EAAFGPIKERGLALEGAYTHFRASDEMNADY-FVQRQNFKEAKAEILRLCEKFAMPHPIF 185

Query: 204 LGPN---------YHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELV 254
              N         +   + R GI+ +G   + + S  ++ V++  A+ +  R   AG+ V
Sbjct: 186 HSHNSAALERFGEFDDDMVRVGIAQHGYA-QFDDSLNLKPVLSLWAQKVSERVLKAGQCV 244

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            YG +    +D  IA   +GY DG  L  +G D E   +    GK         +LGK++
Sbjct: 245 GYGAKFCADKDINIATYDLGYGDGL-LRYAG-DGELPLA---NGKA--------MLGKMS 291

Query: 315 MDMTMFDITDSLSIE-VGDYIQIFGPDIKLDDVALAS---GTTNYDLLVRI 361
           M        DS S E  G+++ +F      DD  + +    T NYD+LV++
Sbjct: 292 M--------DSFSCEDAGEWVCVF------DDANVWARYFDTINYDILVKL 328


>gi|149910818|ref|ZP_01899452.1| alanine racemase [Moritella sp. PE36]
 gi|149806152|gb|EDM66132.1| alanine racemase [Moritella sp. PE36]
          Length = 408

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 143/366 (39%), Gaps = 37/366 (10%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L   + N       +    +  AV+K +AYG G   + P +   G+    +TS  E
Sbjct: 46  LEINLGQFEQNIQQFKKHIKPGTKICAVMKADAYGNGIRGLMPTVIAQGIPCIAITSNAE 105

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL----TFYSKLMSCGVSHP 123
              +R      ++  +      + K   + N+  +I S  Q       Y K       H 
Sbjct: 106 ARLVRSSGFDGQLMRVRSASIDEIKQSLELNIEELIGSESQAEQLAALYEKTGKSIKVH- 164

Query: 124 YALQVDTGFNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            AL  D G  R G+ +      QEA+    +   + +G    I++H    D        V
Sbjct: 165 IALN-DGGMGRNGIDMSSAAGKQEAVAIATSKGIEVVG----IMTHFPNYDAEYIRDKLV 219

Query: 178 QLERFRTLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
             ++    +     +         A+S   L        + RPG   YG     N  +P 
Sbjct: 220 GFKQHSAWLMQNASLNRDDILLHAANSYTALNVKEAQLDMVRPGGVFYGDL-PTNLEYP- 277

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
            ++V+ + RI  I     G+ V Y     + R S++A   +GY+DGYP  + G  SE   
Sbjct: 278 -SIVSFKTRIASIHHLPEGQTVGYDSTYTVKRASILANLPVGYSDGYPRKM-GNKSEV-- 333

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                    I G    ++G  +M+ TM D+TD   +  G  + +FG + K + + ++   
Sbjct: 334 --------IINGQRAKVVGMTSMNTTMVDVTDIQGVFPGQEVTLFGAENK-ERITISEME 384

Query: 353 TNYDLL 358
            N DL+
Sbjct: 385 KNADLI 390


>gi|320094525|ref|ZP_08026295.1| alanine racemase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978541|gb|EFW10114.1| alanine racemase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 360

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 138/341 (40%), Gaps = 42/341 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  A+  N   + A +  A+  AVVK NAYG G   +A     +G     V  + E V+
Sbjct: 18  IDHGAIARNLRVLRAAAPAAKQMAVVKANAYGHGLLPVALTALASGSDWLGVAQLPEAVE 77

Query: 71  LRLYTPQARI------FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---VS 121
           LR    +A +       + +   PG +   F   +   I      T+    +S     V 
Sbjct: 78  LREGLDRAGVDRASAPVLAWITTPGSD---FAGAVRAGIDLSVSWTWVLDAISAAARAVG 134

Query: 122 HPYALQV--DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACADDPS----- 171
            P  + V  DTG +R G +L +           +   L  ++   SHL+  DDPS     
Sbjct: 135 RPARVHVKIDTGMSRAGSTLADLPALASALAAAQADGLVEVVGAWSHLSRGDDPSEGGLA 194

Query: 172 ---SHVNSVQLERFRTLISHYKGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
              SHV     ER   ++    G+  +   LA+++GIL  P  H+ + R GI LYG +  
Sbjct: 195 STASHVG--IFERGLRVLGE-AGVRPAIRHLAATAGILWHPETHYDMVRAGIGLYGLSPD 251

Query: 226 I----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                ++   ++  +T  A +  ++    G  VSYGG  +        +  +GY DG   
Sbjct: 252 PAVADSRELGLRPAMTLRAPLTSVKVIERGAPVSYGGTWRAPTRRWAGLVPLGYGDGILR 311

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
           +     S  +P V  G  G +        G++ MD  + D+
Sbjct: 312 SA----SNAAPVVVRGPGGDVPARCA---GRVCMDQFVIDL 345


>gi|33593228|ref|NP_880872.1| alanine racemase, catabolic [Bordetella pertussis Tohama I]
 gi|33563603|emb|CAE42504.1| alanine racemase, catabolic [Bordetella pertussis Tohama I]
 gi|332382637|gb|AEE67484.1| alanine racemase, catabolic [Bordetella pertussis CS]
          Length = 387

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 147/379 (38%), Gaps = 44/379 (11%)

Query: 7   LRLKIDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           L   ID  A+ +N   +    G      R  A VK +AYG G   + P L  A      V
Sbjct: 15  LHACIDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRAA--DGIAV 72

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYS--KLMSCG 119
             + E  + R       I V  G+ H  +  ++    L  VI+ + QL +     L SC 
Sbjct: 73  RHLHEAHQCRRVGWSGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYSCA 132

Query: 120 VSHPYALQVDTGFNRLG--------LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
              P+      G  RLG         +     +   +   + +G L+   +  +  D   
Sbjct: 133 ---PWIWLRYIGATRLGGLDASEYRRAYARCRELQQHGALRGVGHLNHYANAASVGDLER 189

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ--LTRPGISLYGGTD---KI 226
            H +      F   I    G  ++  S++  +L P    +    RPG++LYG +    + 
Sbjct: 190 EHAD------FEACIRGLPGPVSTCNSAAACVL-PTMAARTDWVRPGLALYGVSPIPGRA 242

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            +   ++  +T  + +   +   AG  V YG      +   + +   GY DGYP      
Sbjct: 243 GRDLGLRPAMTLRSTLCATQNLPAGASVGYGCTFVADQPMALGLVRCGYGDGYP------ 296

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD 345
              H+P      +  + G +   +G+I+MD+   D+    +   G  + ++G P + ++ 
Sbjct: 297 ---HNPRASFPVQ--VDGVLTRTVGRISMDLMAVDLRPIPAAARGAPVVLWGSPQLPVEH 351

Query: 346 VALASGTTNYDLLVRIGTR 364
           +A A+GT   +LL  +  R
Sbjct: 352 IAHAAGTIAAELLTGLTAR 370


>gi|57504964|ref|ZP_00370916.1| alanine racemase, putative [Campylobacter coli RM2228]
 gi|305432037|ref|ZP_07401204.1| alanine racemase [Campylobacter coli JV20]
 gi|57019236|gb|EAL55942.1| alanine racemase, putative [Campylobacter coli RM2228]
 gi|304445121|gb|EFM37767.1| alanine racemase [Campylobacter coli JV20]
          Length = 329

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 153/369 (41%), Gaps = 68/369 (18%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KI+  A ++N   +    G+ +R   V KDNAYG G + +AP     GV    V + +E
Sbjct: 4   IKINQKAYESNLKIIAEKIGSFSRLICVFKDNAYGHGAKILAPIASTLGVNFVAVKNEKE 63

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQE--KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
             +L  +       ++   HP G+E  K I+  N I  I++    T              
Sbjct: 64  AYELEDFFDN---ILILSHHPHGKENSKFIYALNDIDKINAYQNDT------------RI 108

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLERF 182
            L++DTG +R G+ ++   D        K   L L  I +H A AD+  +    +Q E+F
Sbjct: 109 HLKIDTGMHRNGVCVE---DLNEALLKIKCSALKLEGIFTHFAGADEMDASF-FIQREKF 164

Query: 183 RTLISHYKGIEASLA----SSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPMQTVVT 237
                  K I  +L     +S  +         +L R G++ +G  D+      ++ V++
Sbjct: 165 SKAKDIAKQIYKNLIFHSHNSPALFRAVKIPEDELCRTGLAQFGYGDE-----SLKKVLS 219

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A  +  R+   G+ V YGG    T    IA   +GYADG    L   D          
Sbjct: 220 LYAHRLSHRELQIGQSVGYGGAFSATEKIKIATYDLGYADG----LFRYD---------- 265

Query: 298 GKG-FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG----T 352
           GKG  +      ILGKI+M        DS S       Q FG +I + D A        T
Sbjct: 266 GKGDLLLANKQKILGKISM--------DSFS------CQDFGKEICVFDNADVWADFFNT 311

Query: 353 TNYDLLVRI 361
            NY++LV++
Sbjct: 312 INYEILVKL 320


>gi|237753177|ref|ZP_04583657.1| alanine racemase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375444|gb|EEO25535.1| alanine racemase [Helicobacter winghamensis ATCC BAA-430]
          Length = 360

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 118/279 (42%), Gaps = 37/279 (13%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
           A V+KDNAYG G  +IA      G++  FV +++E + ++ +     I     ++P    
Sbjct: 35  AIVLKDNAYGHGIMEIASLAKEVGIKTAFVKNLQEALSIKTFFDNIAI-----LYPNS-- 87

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHP----YALQVDTGFNRLGL---SLQEALDF 145
            + + N +     +P ++F +  +     +P      L+VD+G +R G+    L++A + 
Sbjct: 88  -LPNKNALESALKIPSISFCTPSLESLQEYPSKTNIELKVDSGMHRNGIDKTKLRDAFEL 146

Query: 146 -THNSFNKKLGQLSLIISHLACADDPSS--HVNSVQLERFR----TLISHYKGIEASL-- 196
            T  + N     L  + +H    DD +S  +V  ++    +     L  H+K        
Sbjct: 147 ITTRNLN-----LKGVFTHNGYGDDLNSAFYVQDMEFLEIKKEALKLCEHFKIPRPKFHS 201

Query: 197 ASSSGILLGPNYHFQLT--------RPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
            SSSG L   N++  L         R GI+ YG       +  ++ + +  A  I   K 
Sbjct: 202 LSSSGALRASNFNASLPKELQDDLFRIGIAFYGYNCSSPNTLKLKPIASLFANKISTLKL 261

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
             G  + Y G   L  D +++   IGY DG      G++
Sbjct: 262 KKGTSIGYSGVSMLETDGIVSTYDIGYGDGLFRVREGME 300


>gi|241767429|ref|ZP_04765128.1| alanine racemase [Acidovorax delafieldii 2AN]
 gi|241361801|gb|EER58070.1| alanine racemase [Acidovorax delafieldii 2AN]
          Length = 270

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 110/266 (41%), Gaps = 32/266 (12%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I  +AL +N   +     +A+T AVVK NAYG G E++   L  A    F +  ++E  +
Sbjct: 17  IHASALHHNLERVRQAVPDAKTWAVVKANAYGHGIERVFEGLRAA--DGFALLDLDEAER 74

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +R    +  I +L G+  P   ++     L   +    Q+   +      V H   L+++
Sbjct: 75  VRHLGWRGPILLLEGVFEPRDLELCSRLGLWHAVHCDEQIDMLAA-HKTQVPHRVFLKLN 133

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSSHVNSVQLERFRT 184
           +G NRLG + Q      + S   +L  L  +     ++H + AD P    + VQ   F  
Sbjct: 134 SGMNRLGFTPQR-----YRSAWARLNALPQVDEISFMTHFSDADGPRGIAHQVQT--FNA 186

Query: 185 LISHYKGIEASLASSSGILL---GPNYHFQLTRPGISLYGGTDKINKSHP--------MQ 233
                 G E S+ +S+  L             R GI LYG        HP        +Q
Sbjct: 187 ATQDLPG-ERSICNSAATLRHAGDAQVRGDWVRAGIVLYGSA----PDHPEHTAAQWDLQ 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQ 259
             +T   RII  ++  AG+ V YG +
Sbjct: 242 PSMTLATRIIGTQQLQAGDTVGYGSR 267


>gi|37676689|ref|NP_937085.1| alanine racemase [Vibrio vulnificus YJ016]
 gi|37201232|dbj|BAC97055.1| alanine racemase [Vibrio vulnificus YJ016]
          Length = 408

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 134/355 (37%), Gaps = 54/355 (15%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L   K+N     + ++   +  AV+K +AYG G   + P +    +    + S  E
Sbjct: 46  LEISLGQFKSNIEQFKSHIAPQTKICAVMKADAYGNGIRGLMPTILEQQIPCVAIASNAE 105

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +      + +     ++  +I S  Q     +L S    +   ++
Sbjct: 106 AKLVRESGFEGELIRVRSASTSEIEQALSLDIEELIGSEQQA---RELASLAEKYSKTIK 162

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  +D +     K+          +A A  PS       +H  +   E
Sbjct: 163 VHLALNDGGMG-RNGIDMSTERGQKEA---------VAIATHPSVAVVGIMTHFPNYNAE 212

Query: 181 RFRTLISHYKGIEASLASSSGI---------------LLGPNYHFQLTRPGISLYGGTDK 225
             RT +  +      L  S+G+               L  P     + RPG  LYG    
Sbjct: 213 DVRTKLKSFNQHAQWLMESAGLKREEITLHVANSYTALNVPEAQLDMVRPGGVLYGDL-P 271

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            N  +P  ++V  + R+  +    AG  V Y        D+++A   +GY+DGYP     
Sbjct: 272 TNPEYP--SIVAFKTRVASLHSLPAGSTVGYDSTFTTANDAVMANLTVGYSDGYPRK--- 326

Query: 286 LDSEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                     +G K    I G    ++G  +M+ TM D+++   +  GD + +FG
Sbjct: 327 ----------MGNKAQVLINGQRANVVGVASMNTTMVDVSNIKGVLPGDEVTLFG 371


>gi|312882516|ref|ZP_07742257.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369916|gb|EFP97427.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 407

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 136/341 (39%), Gaps = 26/341 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L+  + N       L+   R  AV+K +AYG G   + P +    +    + S  E
Sbjct: 45  LEVNLSQFRANIEQFETHLAQGTRICAVMKADAYGNGIYGLMPIIIEKKIPCIAIASNSE 104

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +   +  + K     N+  ++ +V Q+  + +L S   + P  + 
Sbjct: 105 AKAVREAGFKGELIRVRSANLKEVKEGLGLNIEELVGTVDQIKEFEEL-SREQATPIKIH 163

Query: 128 V---DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLAC--ADDPSSHVNSVQLE 180
           +   D G  R GL +       H     +   + +  I++H     AD+    + S +  
Sbjct: 164 LALNDGGMGRNGLDMTTDEGQAHAVRIIESPNIEIVGIMTHFPNYDADEVKQKLASFKTN 223

Query: 181 R---FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
               F       K +   +A+S   +  P     + RPG  LYG     N  +P  ++V+
Sbjct: 224 TQWIFDNTTLERKDVILHVANSYASVNVPESQLDMVRPGGVLYGDL-PTNPEYP--SIVS 280

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + RI  +    A   V Y       + S++A   +GY+DGYP  +              
Sbjct: 281 FKTRIASLHNLPANSTVGYDSTYTTEKKSVLANLPVGYSDGYPRKMGNR----------- 329

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            +  + G    ++G  +M+ TM D+++   +  G  + +FG
Sbjct: 330 AQVLVNGQRAKVVGVTSMNTTMVDVSNVKGVLPGQEVTLFG 370


>gi|218458070|ref|ZP_03498161.1| alanine racemase protein [Rhizobium etli Kim 5]
          Length = 73

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 303 KGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           KG  +PI+G+++MD T  DIT     ++ +G  +++ GP+  LDDVA  +GT +Y++L  
Sbjct: 4   KGIRLPIVGRVSMDSTTVDITALPEGALSLGSLVEVLGPNQTLDDVAGDAGTISYEILTG 63

Query: 361 IGTRYAKFY 369
           +G RY + Y
Sbjct: 64  LGDRYDRQY 72


>gi|27366912|ref|NP_762439.1| alanine racemase [Vibrio vulnificus CMCP6]
 gi|34098524|sp|Q8D6Q0|ALR2_VIBVU RecName: Full=Alanine racemase 2
 gi|27358479|gb|AAO07429.1| alanine racemase [Vibrio vulnificus CMCP6]
          Length = 408

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 134/355 (37%), Gaps = 54/355 (15%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L   K+N     + ++   +  AV+K +AYG G   + P +    +    + S  E
Sbjct: 46  LEISLGQFKSNIEQFKSHIAPQTKICAVMKADAYGNGIRGLMPTILEQQIPCVAIASNAE 105

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R    +  +  +      + +     ++  +I S  Q     +L S    +   ++
Sbjct: 106 AKLVRESGFEGELIRVRSASTSEIEQALSLDIEELIGSEQQA---RELASLAEKYSKTIK 162

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  +D +     K+          +A A  PS       +H  +   E
Sbjct: 163 VHLALNDGGMG-RNGIDMSTERGPKEA---------VAIATHPSVAVVGIMTHFPNYNAE 212

Query: 181 RFRTLISHYKGIEASLASSSGI---------------LLGPNYHFQLTRPGISLYGGTDK 225
             RT +  +      L  S+G+               L  P     + RPG  LYG    
Sbjct: 213 DVRTKLKSFNQHAQWLMESAGLKREEITLHVANSYTALNVPEAQLDMVRPGGVLYGDL-P 271

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            N  +P  ++V  + R+  +    AG  V Y        D+++A   +GY+DGYP     
Sbjct: 272 TNPEYP--SIVAFKTRVASLHSLPAGSTVGYDSTFTTANDAVMANLTVGYSDGYPRK--- 326

Query: 286 LDSEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                     +G K    I G    ++G  +M+ TM D+++   +  GD + +FG
Sbjct: 327 ----------MGNKAQVLINGQRANVVGVASMNTTMVDVSNIKGVLPGDEVTLFG 371


>gi|307243449|ref|ZP_07525605.1| putative alanine racemase [Peptostreptococcus stomatis DSM 17678]
 gi|306493173|gb|EFM65170.1| putative alanine racemase [Peptostreptococcus stomatis DSM 17678]
          Length = 358

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 149/375 (39%), Gaps = 59/375 (15%)

Query: 5   EFLRLKIDLTAL-KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E  +L+IDL A+ KN    +    G     AVVK+NAY  G E+     Y AGV+ F  T
Sbjct: 2   ENAKLRIDLGAIYKNATRVLKETDGG--LIAVVKNNAYNFGLERAVETFYKAGVRVFATT 59

Query: 64  SVEEGVKLR-LYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVS 121
           S++E +K+R LY        +  ++P +E   FD      + +++  L F    +     
Sbjct: 60  SLKECIKMRDLYED----ITIISLNPAKE---FDLLRKYRISTAIANLDFVKNNLEDMKG 112

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             + L+      R G   +E +    +        +  + +H + AD+          ER
Sbjct: 113 ISWQLEWAGSMRRSGCRSKEEMSEILSLARDNNIDIEGVWTHFSWADEFD---QDKTYER 169

Query: 182 FRTL----------ISHYKGIEASLASSSGI--LLGPNYHFQLTRPGISLYGGTDKINKS 229
            R +          +  +K I A  ++S     LL  + H +L   GI LYG        
Sbjct: 170 EREIWLDALAAAKRVHKFKFIHAQNSASFARDGLLEDHSHVRL---GIYLYGCLPYRECP 226

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG----------- 278
             +   ++  AR++ I     G+ + Y         + +AV  +GY DG           
Sbjct: 227 KKIDHAISLSARVLSIIHLDPGQSIGYCSSFVAKEPTDLAVINMGYGDGLLRSRIRGHDL 286

Query: 279 ------YPLTLSGLDSEHS-----PSVFLGGKGFIKGYMVPI----LGKITMDMTMFDIT 323
                 YPL    L   HS      +V LG + +  G+ +P+       +  +     + 
Sbjct: 287 EINKRRYPLV--SLMMSHSVAIIDEAVTLGDEVYFYGHDIPVHEYTFKGVASNSEQISVL 344

Query: 324 DSLSIEVGDYIQIFG 338
           + +S++V DYI+I G
Sbjct: 345 NHMSLDV-DYIEIDG 358


>gi|33600629|ref|NP_888189.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50]
 gi|33568229|emb|CAE32141.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50]
          Length = 387

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 147/375 (39%), Gaps = 44/375 (11%)

Query: 11  IDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ID  A+ +N   +    G      R  A VK +AYG G   + P L  A      V  + 
Sbjct: 19  IDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRAA--DGIAVRHLH 76

Query: 67  EGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHP 123
           E  + R    +  I V  G+ H  +  ++    L  VI+ + QL +     L +C    P
Sbjct: 77  EAHQCRRVGWRGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYACA---P 133

Query: 124 YALQVDTGFNRLG--------LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           +      G  RLG         +     +   +   + +G L+   +  +  D    H +
Sbjct: 134 WIWLRYIGATRLGGLDAGEYRRAYARCRELQQHGALRGVGHLNHYANAASVGDLEREHAD 193

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ--LTRPGISLYGGTD---KINKSH 230
                 F   I    G  ++  S++  ++ P    +    RPG++LYG +    ++ +  
Sbjct: 194 ------FEACIRGLPGPVSTCNSAASCVM-PTMAARTDWVRPGLALYGVSPIPGRVGRDL 246

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +T  + +   +   AG  V YG      +   + +   GY DGYP         H
Sbjct: 247 GLRPAMTLRSTLCATQNLPAGASVGYGCAFVADQPMALGLVRCGYGDGYP---------H 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALA 349
           +P      +  + G +   +G+I+MD+   D+    +   G  + ++G P + ++ +A A
Sbjct: 298 NPRASFPVQ--VDGVLTRTVGRISMDLMAVDLRPIPAAARGAPVVLWGSPQLPVEHIAHA 355

Query: 350 SGTTNYDLLVRIGTR 364
           + T   +LL  +  R
Sbjct: 356 ADTIAAELLTGLTAR 370


>gi|309789198|ref|ZP_07683791.1| alanine racemase, catabolic domain protein [Shigella dysenteriae
           1617]
 gi|308922952|gb|EFP68466.1| alanine racemase, catabolic domain protein [Shigella dysenteriae
           1617]
          Length = 165

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 10/132 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEGV 69
           +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G  D F + ++EE +
Sbjct: 9   LDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALLNLEEAI 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYA--L 126
            LR    +  I +L G    Q+  I+D + L   + S  QL     L +  +  P    L
Sbjct: 66  TLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQL---KALQNARLKAPLDIYL 122

Query: 127 QVDTGFNRLGLS 138
           +V++G NRLG  
Sbjct: 123 KVNSGMNRLGFQ 134


>gi|118474927|ref|YP_892713.1| alanine racemase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414153|gb|ABK82573.1| alanine racemase [Campylobacter fetus subsp. fetus 82-40]
          Length = 337

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 155/345 (44%), Gaps = 51/345 (14%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90
           R  AV+KD+AYG G   +A      G++   V S++E +++  +     I +L  I  G+
Sbjct: 27  RIIAVLKDDAYGHGAVLMAGIASGFGIKWACVKSIDEAIEISPFFKN--IIILSHIPNGK 84

Query: 91  EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150
           E    +   I  I+ +  L     ++  G+S    L +DT  +R G+ + E ++   N  
Sbjct: 85  E----NDEFIYAINDLSGLD----VIKSGIS--VHLAIDTMMHRNGIGIDE-IETAFNIA 133

Query: 151 NKKLGQLSLIISHLACADDPSS--HVNSVQLERFR-TLISHYK--GIEASL---ASSSGI 202
             +  ++    +H   +D+ S   +V      + +  L S +K  G++  +    +S+ I
Sbjct: 134 KNRSIRICGAYTHFRSSDEISGDYYVQKANFLKAKIKLKSLFKKNGVDKPMFHSHNSAAI 193

Query: 203 LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262
                +  +  R GI  +G + + ++S  ++ V++  A  I  R   AG+ V YGG    
Sbjct: 194 ERTNGFDDEFVRAGIVQFGYS-QFDESLNLKKVLSLWADRISKRVLKAGQSVGYGGAFTA 252

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
            +D  IA   +GY DG  L  +G    H  +   G K         ILGK++MD   F  
Sbjct: 253 KKDINIATYDLGYGDGL-LRYNGKGDLHLAN---GEK---------ILGKMSMD--SFSC 297

Query: 323 TDSLSIEVGDYIQIFGPDIKLDDVALAS---GTTNYDLLVRIGTR 364
            DS     GD I +F      DD  + +    T +YD+LV++ ++
Sbjct: 298 ADS-----GDQICVF------DDARVWAKFFDTISYDILVKLSSK 331


>gi|253583923|ref|ZP_04861121.1| alanine racemase [Fusobacterium varium ATCC 27725]
 gi|251834495|gb|EES63058.1| alanine racemase [Fusobacterium varium ATCC 27725]
          Length = 351

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 160/380 (42%), Gaps = 53/380 (13%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV---T 63
           +++ I+   L +N   +  L G      VVK NAYG G E I  ALY+ G ++  V    
Sbjct: 6   IKMIINQKNLLSNIDYLKKLKG-KNILPVVKANAYGHGVELIIKALYDGGQREVAVARYV 64

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SH 122
             E  +K+ L     +I V   I    E I  + NL   I+   +L     L+  G+ S+
Sbjct: 65  EAENILKMNL-GSDLKILVFESI-GDIELIKNNPNLEIAINDFNEL---KDLIKAGIPSN 119

Query: 123 PYALQVDTGFNRLGLSLQEALD---FTHNSFNKKLGQLSLIIS-----HLACADDPSSHV 174
              L++D GF R G+SL E  +   FT+ +  K  G  S + +      L   D  S  V
Sbjct: 120 RMQLKIDLGFGRNGISLSEIPELEKFTNENNLKFKGVFSHLFAVNYEDGLELIDLFSDVV 179

Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT---RPGISLYGGTDKINKSHP 231
           NS+  ++F  +          L +S+ ++   NY+  +    R G+  YG  +       
Sbjct: 180 NSIGKDKFEMI---------HLQNSAAVM---NYNCDIATHIRVGMLTYGLQEVGYFDPN 227

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL--IAVAAIGYADGYPLTLSGLDSE 289
           ++ V + E ++  +R     + V+Y  +  L  ++   +A   IGY DG+      L   
Sbjct: 228 LKQVFSLEGQVAGVRDIEDHKYVAYELKDDLDIENCKYLAKIKIGYGDGF------LKRN 281

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                 +  K F        + ++TMD T  ++    S++ GD + ++    K   V   
Sbjct: 282 EKSKCIINNKEF-------KIAQVTMDNTFIEV--DASVKEGDRVLLYNDITK---VVNF 329

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +G   Y+LL  +  R  + Y
Sbjct: 330 TGMNIYELLTILSPRIPRVY 349


>gi|332286614|ref|YP_004418525.1| alanine racemase, catabolic [Pusillimonas sp. T7-7]
 gi|330430567|gb|AEC21901.1| alanine racemase, catabolic [Pusillimonas sp. T7-7]
          Length = 388

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 152/387 (39%), Gaps = 61/387 (15%)

Query: 11  IDLTALKNNWHSMNALSGNART------AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           ID TA+++N + +  L    +T       AV K +AYG   E     L  A      V +
Sbjct: 29  IDHTAIRHNLNRLRQLLAYPKTLPTPLIWAVAKADAYGHTLEHAYAGLCEA--DGLAVLT 86

Query: 65  VEEGVKLR-------LYTPQARIF-------VLYGIH---PGQEKIIFDTNLIPVISSVP 107
           ++E    R       +    A+I        +LY +H     QE++    +L P  S   
Sbjct: 87  LDEARHCRSLGWTGPILAMSAQITQAALEDPILYPLHLIIDHQEQLAAIQSLRPPFSPHV 146

Query: 108 QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
            L +  +L   G           G+     SLQ  L    +    +LG L     H A A
Sbjct: 147 WLRYRGRLNHAGFD-------QAGYKSAYASLQSGL---RDGRLAELGHLQ----HYATA 192

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT---RPGISLYGGTD 224
           ++    +   Q   F+ LI    G   +   +S  LL  +    LT   R GI+LYG + 
Sbjct: 193 EEAEPMLAERQA--FQLLIEGLPGPVCT--DNSAALLSDHSGAALTSWVRSGIALYGISP 248

Query: 225 KIN---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                 K   ++  +  +A +   +   AG+ + YG     +R + + +   GYA GYP 
Sbjct: 249 LAGLNGKDLGLRPAMVLQAPLYGFQTLQAGDSLGYGSTFLASRKTRVGLVRCGYAHGYPR 308

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PD 340
                      S+  G +  + G M  I+G+++MD    D+TD      G  + ++G P+
Sbjct: 309 -----------SIPEGCEVMVTGRMATIIGRVSMDTLTIDLTDHPDAGYGTVVTLWGTPE 357

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAK 367
           + ++ VA  + T    L   +  R  +
Sbjct: 358 LPIEVVAAQANTIPAQLCTALTERVPR 384


>gi|320158793|ref|YP_004191171.1| alanine racemase [Vibrio vulnificus MO6-24/O]
 gi|319934105|gb|ADV88968.1| alanine racemase [Vibrio vulnificus MO6-24/O]
          Length = 408

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 134/355 (37%), Gaps = 54/355 (15%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I L   K+N     + ++   +  AV+K +AYG G   + P +    +    + S  E
Sbjct: 46  LEISLGQFKSNIEQFKSHIAPQTKICAVMKADAYGNGIRGLMPTILEQQIPCVAIASNAE 105

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              +R      ++  +      + +   D  +  +I S  Q     +L +    +   ++
Sbjct: 106 AKLVRESGFTGQLIRVRSASYSEIEQGLDLQIEELIGSEQQA---RELANLAEKYSKTIK 162

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-------SHVNSVQLE 180
           V    N  G+  +  +D +     K+          +A A  PS       +H  +   E
Sbjct: 163 VHLALNDGGMG-RNGIDMSTERGQKEA---------VAIATHPSVAVVGIMTHFPNYNAE 212

Query: 181 RFRTLISHYKGIEASLASSSGI---------------LLGPNYHFQLTRPGISLYGGTDK 225
             RT +  +      L  S+G+               L  P     + RPG  LYG    
Sbjct: 213 DVRTKLKSFNQHAQWLMESAGLKREEITLHVANSYTALNVPEAQLDMVRPGGVLYGDL-P 271

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            N  +P  ++V  + R+  +    AG  V Y        D+++A   +GY+DGYP     
Sbjct: 272 TNPEYP--SIVAFKTRVASLHSLPAGSTVGYDSTFTTANDAVMANLTVGYSDGYPRK--- 326

Query: 286 LDSEHSPSVFLGGKG--FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
                     +G K    I G    ++G  +M+ TM D+++   +  GD + +FG
Sbjct: 327 ----------MGNKAQVLINGQRANVVGVASMNTTMVDVSNIKGVLPGDEVTLFG 371


>gi|57242224|ref|ZP_00370163.1| alanine racemase, putative [Campylobacter upsaliensis RM3195]
 gi|57016904|gb|EAL53686.1| alanine racemase, putative [Campylobacter upsaliensis RM3195]
          Length = 327

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 146/364 (40%), Gaps = 60/364 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + +D  A K+N   +   +G   +   V KDNAYG G   +AP     GV    V    E
Sbjct: 4   ITLDSNAYKHNLSYIATRAGGYDKLICVFKDNAYGHGICLLAPVAKACGVNFVAVKDENE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              L  Y     I +L     G E + F       I ++ + + ++K       H   L+
Sbjct: 64  AYLLEKYFDN--ILILSHRPTGNENLNF-------IYALNEPSSFAKFKKNTRIH---LK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACAD--DPSSHVNSVQLERFR 183
           +DT  +R G+ +     F      K+L  L+L    +H   AD  D S        ++ +
Sbjct: 112 IDTNMHRNGIDVNGLEKFL-----KELCHLNLEGAFTHFMSADELDASYFTQKYNFQKAK 166

Query: 184 TLISHYKGIEASLAS--SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
            +I ++     +  S  SS +  G     ++ R G+  +G  DK      ++ V+   A 
Sbjct: 167 KIIKNFTQNTLTFHSFNSSALFRGKMPQDEMCRVGLVQFGYGDK-----GLKKVLRLYAH 221

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
            +  R    G+ V YGG         IA   +GYADG    L   D          GKG 
Sbjct: 222 KLSSRVLEKGQSVGYGGAYVANEPLQIATYDLGYADG----LFRYD----------GKGQ 267

Query: 302 IK-GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG---TTNYDL 357
           +K      +LGK++MD   F   DS     G+ I +      LDD  L +    T NY++
Sbjct: 268 LKLANGKEMLGKMSMD--SFSCEDS-----GEEICV------LDDANLWADFFHTINYEI 314

Query: 358 LVRI 361
           LV++
Sbjct: 315 LVKL 318


>gi|302543291|ref|ZP_07295633.1| alanine racemase [Streptomyces hygroscopicus ATCC 53653]
 gi|302460909|gb|EFL24002.1| alanine racemase [Streptomyces himastatinicus ATCC 53653]
          Length = 252

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 12/218 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DLTAL++N  ++ A +  A   AVVK + YG G    A A   AG       + EE
Sbjct: 12  RAVVDLTALRDNVRALRAAAPTAELMAVVKSDGYGHGAIPCARAARAAGAGWLGTATPEE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYAL 126
            + LR    Q R+        G  +   + ++    S V  L    +   +CG +    L
Sbjct: 72  ALALRAAGDQGRLMCWLWTPGGPWRQAIEADIDVSASGVWALREAVAAARACGRTARVQL 131

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +  +    +   +     +++ + SH ACAD+P     + QL  FR
Sbjct: 132 KADTGLGRNGCPPADWPELVAEALAAEAEGTVKVTGLWSHFACADEPGHPSIAAQLTVFR 191

Query: 184 TLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPG 216
            L+   +  G+      LA+S   L     H    RPG
Sbjct: 192 ELLDQAERAGLRPEVRHLANSPATL---TIHRVALRPG 226


>gi|307720266|ref|YP_003891406.1| Alanine racemase [Sulfurimonas autotrophica DSM 16294]
 gi|306978359|gb|ADN08394.1| Alanine racemase [Sulfurimonas autotrophica DSM 16294]
          Length = 339

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 124/303 (40%), Gaps = 44/303 (14%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR-LYTPQARIFVLYGI-HP 88
           + A V+KDNAYG G  +IA      G+    V S EE  ++  L+     I VL      
Sbjct: 27  KIALVLKDNAYGHGLFEIATLAKEYGITKAVVRSNEEAKEIENLFEY---ILVLADTPKE 83

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
             +KI +  N I  I    + T               L+VDTG  R G+ + E L+    
Sbjct: 84  ASQKIRYTINDIRQIQKFAKNT------------KVELKVDTGMCRNGIMMDE-LEEAFI 130

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR-------TLISHYKGIEASLAS--S 199
              ++  QL  + +H + AD+ + + + +Q E F+        L   Y  I     S  S
Sbjct: 131 LCAQQGLQLEAVFTHHSSADEDNRYFD-LQNENFKRVKQDSQVLAKKYSFIPLRFHSFNS 189

Query: 200 SGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVVTAEARIILIRKALAGELVSYG 257
           + +    ++   + R GI+ YG  +  +  H   +Q V++  A+ +  R+   GE V YG
Sbjct: 190 AALFRSNDFDEDMARVGIAAYGCLELPSSLHVKNLQPVLSVYAQRLSSRRLQKGECVGYG 249

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
              +      ++    GY DG+  + S                +I    + I G+I+MD 
Sbjct: 250 AAFETAVTCNVSNYDFGYGDGFLRSCS--------------HHYITPEGIKIAGRISMDN 295

Query: 318 TMF 320
           + F
Sbjct: 296 SSF 298


>gi|309802669|ref|ZP_07696773.1| putative alanine racemase [Bifidobacterium dentium JCVIHMP022]
 gi|308220733|gb|EFO77041.1| putative alanine racemase [Bifidobacterium dentium JCVIHMP022]
          Length = 353

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 32/156 (20%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-----------SHLACADDPS--S 172
           ++VD+GF R G        FT   F+  L +L  ++           SHLA AD P    
Sbjct: 157 VKVDSGFGRNG--------FTPAGFDAALAKLVPLVKEGVLHVVGQWSHLAVADAPDVPE 208

Query: 173 HVNSV--QLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDK 225
            V S   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LYG    
Sbjct: 209 FVASTDRQIENFKDFTRRMEAAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLYGYEAD 268

Query: 226 INKSHP----MQTVVTAEARIILIRKALAGELVSYG 257
                P    ++  +T +A++  ++   AG  +SYG
Sbjct: 269 PAMGTPGTYGLKPAMTLQAQLGTVKDVEAGHGISYG 304


>gi|167949693|ref|ZP_02536767.1| alanine racemase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 182

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 121 SHPYA--LQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNS 176
           +HP    L+VD+G +RLG    EA+        +   LG L L+ +HLA ADDP    N 
Sbjct: 51  AHPIEVWLKVDSGMHRLGFR-PEAVAAVAQRLQQTPALGVLHLM-THLANADDPQDPANQ 108

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
            Q  RF   I      + S+A+S+G+L  P       RPGI LYG
Sbjct: 109 DQCVRFDA-IDTTPFAQLSIANSAGLLAFPECQRDWVRPGIMLYG 152


>gi|315638691|ref|ZP_07893865.1| alanine racemase [Campylobacter upsaliensis JV21]
 gi|315481315|gb|EFU71945.1| alanine racemase [Campylobacter upsaliensis JV21]
          Length = 327

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 145/364 (39%), Gaps = 60/364 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + +D  A K+N   +   +G   +   V KDNAYG G   +AP     GV    V    E
Sbjct: 4   ITLDSNAYKHNLSYIATRAGGYDKLICVFKDNAYGHGICLLAPVAKACGVNFVAVKDENE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              L  Y     I +L     G E + F       I ++ + + ++K       H   L+
Sbjct: 64  AYLLEKYFDN--ILILSHRPTGNENLNF-------IYALNEPSSFAKFKKNTRIH---LK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACAD--DPSSHVNSVQLERFR 183
           +DT  +R G+ +     F      K+L  L+L    +H   AD  D S        ++ +
Sbjct: 112 IDTNMHRNGIDVNGLEKFL-----KELCHLNLEGAFTHFMSADELDASYFTQKYNFQKAK 166

Query: 184 TLISHYKGIEASLAS--SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
            +I ++     +  S  SS +  G     ++ R G+  +G  DK      ++ V+   A 
Sbjct: 167 KIIKNFTQNTLTFHSFNSSALFRGKMPQDEMCRVGLVQFGYGDK-----GLKKVLRLYAH 221

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
            +  R    G+ V YGG         IA   +GYADG    L   D          GKG 
Sbjct: 222 KLSSRVLEKGQSVGYGGAYVANEPLQIATYDLGYADG----LFRYD----------GKGQ 267

Query: 302 IK-GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG---TTNYDL 357
           +K      +LGK++MD   F   DS     G  I +      LDD  L +    T NY++
Sbjct: 268 LKLANGKEMLGKMSMD--SFSCEDS-----GGEICV------LDDANLWADFFHTINYEI 314

Query: 358 LVRI 361
           LV++
Sbjct: 315 LVKL 318


>gi|148557035|ref|YP_001264617.1| alanine racemase domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148502225|gb|ABQ70479.1| alanine racemase domain protein [Sphingomonas wittichii RW1]
          Length = 384

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 129/325 (39%), Gaps = 23/325 (7%)

Query: 37  KDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD 96
           K + YG+G E+I      AGV  F + + EE ++ +       + +  G  P     + +
Sbjct: 52  KGDGYGVGVERIVCLGVRAGVDGFCLGTPEEALRAKCVAAGRPVLLFAGCDPAALGEMVE 111

Query: 97  TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ 156
             +I  ISSV        L+  G +     ++D GF R GL+  +          +   +
Sbjct: 112 AGIIVSISSVEGC---EALLRSGATGDVFFKLDCGFRRYGLNEPDLRTVLARVRRQSSVR 168

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISH--YKGIEASLASSSGILLGPNYHFQLTR 214
                SH     D          +R   LI     + IE  +ASS+ IL  P        
Sbjct: 169 CIGAYSHFGSRADEIVDGGLPLFDRLTRLIEDAVQRPIETMVASSTLILQRPGLGHSAVD 228

Query: 215 PGISLYGGTDKINKSHPMQTVVTA-EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI 273
           PG  LYG      +  P Q +V    +R++ +       L++ G   K       A+ A 
Sbjct: 229 PGRLLYGMMAAGPEMPPFQPIVPRISSRLLQVTPFDEARLLTVGYADK------TAIPAG 282

Query: 274 GYADGYPLT-LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           G    +PL  + GL +      F  G+  I+G  + ++ + T+  ++ +++    + VGD
Sbjct: 283 GATGVFPLGWIDGLSAHRG---F--GEVLIRGTRLSVVAR-TLQHSIVNLSGLSDVRVGD 336

Query: 333 YIQIFGP----DIKLDDVALASGTT 353
            + + G      I L+ +A A G +
Sbjct: 337 EVVLVGAQGDEQIGLEAMASAQGMS 361


>gi|257458910|ref|ZP_05624031.1| alanine racemase [Campylobacter gracilis RM3268]
 gi|257443707|gb|EEV18829.1| alanine racemase [Campylobacter gracilis RM3268]
          Length = 337

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 145/369 (39%), Gaps = 60/369 (16%)

Query: 11  IDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +D  A  +N   + A  G A R   V KDN+YG GC          G       S  E  
Sbjct: 6   LDRAAYAHNLAQIAAKVGGAERVFLVAKDNSYGHGCRLCCEEAAKLGFVRAVTRSATEAA 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           ++     +  I VL  I  G E   F         +V  L+++++L          +  D
Sbjct: 66  QIADLFDE--ILVLSHIPGGDEDERF-------CYAVNDLSYFARLKR---GLKIYIAAD 113

Query: 130 TGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPS--------SHVNSVQ 178
           T  +R G++   L EAL        K  G      +H   +D+ S        + +   +
Sbjct: 114 TAMHRNGIAASELDEALRLCKQGGFKLCG----FFTHFRASDELSGDFFAQRQNFIEFKR 169

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           L R +   + +  ++   ++S+ I     +  +  R G++ +G   + ++S  ++ V+  
Sbjct: 170 LARQKAAAAGFGNLKFHSSNSAAIERSAGFEDEYVRVGMAQFG-YPQFDESLNLRPVLKL 228

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A +I  R    GE V YG + +   D  I    +GYADG    L   D E   ++  G 
Sbjct: 229 YADLISSRVLKKGERVGYGAKFEAPHDMRIGTYDLGYADG----LFRYDGEGELALASGQ 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS----GTTN 354
           K         +LGK++M        DS   E G      G  + + D A A     GT  
Sbjct: 285 K---------MLGKMSM--------DSFCAEFG------GEQVCVLDDARAWAKHFGTIE 321

Query: 355 YDLLVRIGT 363
           Y++LV++ +
Sbjct: 322 YEILVKLNS 330


>gi|309806961|ref|ZP_07700943.1| alanine racemase [Lactobacillus iners LactinV 03V1-b]
 gi|308166581|gb|EFO68778.1| alanine racemase [Lactobacillus iners LactinV 03V1-b]
          Length = 265

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 107/267 (40%), Gaps = 46/267 (17%)

Query: 126 LQVDTGFNRLGLSLQEAL----DF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           L +D+G  R+G +  +A     D+  +H  ++     +  + +H + AD         Q+
Sbjct: 18  LAIDSGMGRIGFNEDDAFLKANDYLLSHPEYD-----VEGMFTHFSTADCHDLEYFDSQV 72

Query: 180 ERFRTLISHYKGI------EASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KI 226
           ++F     H+K +           +S+  +        L R GI++YG          +I
Sbjct: 73  KKF----DHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEI 128

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                +Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G 
Sbjct: 129 QPKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF 188

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK---- 342
                       K  +     PI+G++ MD  M  + + +   VG  +++   D K    
Sbjct: 189 ------------KVKVGDVYCPIVGRVCMDQFMVLLPEKMP--VGTPVELISADAKAPNN 234

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  VA  + T +Y++   +  R  + Y
Sbjct: 235 IKAVADYANTIHYEIACLLSDRVPREY 261


>gi|168217469|ref|ZP_02643094.1| alanine racemase family protein [Clostridium perfringens NCTC 8239]
 gi|182380489|gb|EDT77968.1| alanine racemase family protein [Clostridium perfringens NCTC 8239]
          Length = 350

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 144/344 (41%), Gaps = 46/344 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           +    ++L  ++NN + +  L  N +  AV+K +AYGLG +KIA  + +  V    V ++
Sbjct: 4   YFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKKIAEFIEDK-VDIIAVGNI 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   L L      I +L  +    +      NLI  + +   L    K     V H Y 
Sbjct: 63  DES--LCLDNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKETKKRV-HIY- 118

Query: 126 LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             VDTG NR+G+    L   ++   N F     ++  I +HL  A D +  +   Q+E F
Sbjct: 119 --VDTGMNRMGIKPNKLDSFIERVKNEFPNL--EIDGIYTHLHNAKDVNYTLK--QIELF 172

Query: 183 RTLISHYKG---IEASLASSSGI--LLGPNYHFQL-TRPGISLYG--GTDK-INKSHPMQ 233
           ++ +  YK    I   +ASS+ +   L     F    R G  LYG  G +K I K++   
Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLKKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
                 A+ +   K   G+ V YG   K  +D  I +   G   G      G+  E   +
Sbjct: 233 ------AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGL-----GISREIKNN 281

Query: 294 VF----------LGGKGFIKGYMVP--ILGKITMDMTMFDITDS 325
           VF             +  I    VP  ILGK+ M++T+  + + 
Sbjct: 282 VFYDIFRMIYRRFKERSVIFNNNVPVKILGKVNMNITIISMENC 325


>gi|110799046|ref|YP_695763.1| alanine racemase family protein [Clostridium perfringens ATCC
           13124]
 gi|182626219|ref|ZP_02953977.1| alanine racemase family protein [Clostridium perfringens D str.
           JGS1721]
 gi|110673693|gb|ABG82680.1| alanine racemase family protein [Clostridium perfringens ATCC
           13124]
 gi|177908483|gb|EDT71016.1| alanine racemase family protein [Clostridium perfringens D str.
           JGS1721]
          Length = 350

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 143/344 (41%), Gaps = 46/344 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           +    ++L  ++NN + +  L  N +  AV+K +AYGLG +KIA  + +  V    V ++
Sbjct: 4   YFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKKIAEFIEDK-VDIIAVGNI 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   L L      I +L  +    +      NLI  + +   L    K     V H Y 
Sbjct: 63  DES--LCLDNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKETKKRV-HIY- 118

Query: 126 LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             VDTG NR+G+    L   ++   N F     ++  I +HL  A D +  +   Q+E F
Sbjct: 119 --VDTGMNRMGIKPNKLDSFIERIKNEFPNL--EIDGIYTHLHNAKDVNYTLK--QIELF 172

Query: 183 RTLISHYKG---IEASLASSSGILLGPNYHFQLT---RPGISLYG--GTDK-INKSHPMQ 233
           ++ +  YK    I   +ASS+ +          T   R G  LYG  G +K I K++   
Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
                 A+ +   K   G+ V YG   K  +D  I +   G   G      G+  E   +
Sbjct: 233 ------AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGL-----GISREIKNN 281

Query: 294 VF----------LGGKGFIKGYMVP--ILGKITMDMTMFDITDS 325
           VF             +  I    VP  ILGK+ M++T+  + + 
Sbjct: 282 VFYDIFRMIYRRFKERSVIFNNNVPVKILGKVNMNITIISMENC 325


>gi|154148940|ref|YP_001406018.1| alanine racemase [Campylobacter hominis ATCC BAA-381]
 gi|153804949|gb|ABS51956.1| alanine racemase [Campylobacter hominis ATCC BAA-381]
          Length = 336

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 143/348 (41%), Gaps = 54/348 (15%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L G  +   + KDN+YG G  +IA      G++   V S  E  ++  +  +  I +L  
Sbjct: 22  LGGKEKIMLIAKDNSYGHGSAQIAGIAREFGIKKAVVKSEMEAEQIAEFYDE--ILILSH 79

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
           I  G EK  F         ++  ++ +SK+ +    H   + VDT  +R G+ L E LD 
Sbjct: 80  IPTGCEKPDFSY-------AINDMSHFSKIKNGSKVH---ISVDTLMHRNGI-LPEQLDD 128

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-ISHYKGIEA-------SLA 197
                 +    L    +H   +D+  S    VQ E +R   IS  K  +           
Sbjct: 129 ALRLVRENHLNLGGFYTHFRASDEIGSDF-FVQRENWRNFKISAQKKCKNLGFNVVFHSC 187

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
           +S+ I     +     R G++ +G   + ++   ++ V++  A  I  R    GE V YG
Sbjct: 188 NSAAIERSEEFSDDFARVGMAQFGYF-QFSEILGLKPVLSLYADRISSRLLKKGERVGYG 246

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK-GYMVPILGKITMD 316
           G  +   D LI+   +GY DG               +   GKG ++ G    ILGK++MD
Sbjct: 247 GVFEAPCDILISTYDLGYGDGL--------------LRYNGKGDLRLGNNEKILGKMSMD 292

Query: 317 MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS---GTTNYDLLVRI 361
                     S + G+ + +F      DD  + +    T  Y++LV++
Sbjct: 293 SFA-------SKDAGERVCVF------DDARVWARFFNTIEYEILVKL 327


>gi|18310043|ref|NP_561977.1| alanine racemase [Clostridium perfringens str. 13]
 gi|18144722|dbj|BAB80767.1| probable alanine racemase [Clostridium perfringens str. 13]
          Length = 350

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 143/344 (41%), Gaps = 46/344 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           +    ++L  ++NN + +  L  N +  AV+K +AYGLG ++IA  + +  V    V ++
Sbjct: 4   YFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKEIAEFIEDK-VDIIAVGNI 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   L L      I +L  +    +      NLI  + +   L    K     V H Y 
Sbjct: 63  DES--LCLDNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKETKKRV-HIY- 118

Query: 126 LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             VDTG NR+G+    L   ++   N F     ++  I +HL  A D +  +   Q+E F
Sbjct: 119 --VDTGMNRMGIKPNKLDSFIERVKNEFPNL--EIDGIYTHLHNAKDVNYTLK--QIELF 172

Query: 183 RTLISHYKG---IEASLASSSGILLGPNYHFQLT---RPGISLYG--GTDK-INKSHPMQ 233
           ++ +  YK    I   +ASS+ +          T   R G  LYG  G +K I K++   
Sbjct: 173 KSTVEKYKDKVRIIHCMASSAVVNDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
                 A+ +   K   G+ V YG   K  +D  I +   G   G      G+  E   +
Sbjct: 233 ------AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGL-----GISREIKNN 281

Query: 294 VF----------LGGKGFIKGYMVP--ILGKITMDMTMFDITDS 325
           VF             +  I    VP  ILGK+ M++T+  + + 
Sbjct: 282 VFYDIFRMIYRRFKERSVIFNNNVPVKILGKVNMNITIISMENC 325


>gi|1373382|gb|AAB17466.1| alanine racemase [Treponema pallidum]
          Length = 178

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 16/150 (10%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
            AR    VK +AYG G   +A A  + GV  F V  V+E  +LR    +A I  L    P
Sbjct: 5   RARVCLPVKADAYGHGACDVAQAALSCGVHSFAVACVQEASQLRAAGVRAPILCLST--P 62

Query: 89  GQEKI--IFDTNLIPVISSVPQLTFYSKLM--------SCGVSHPYALQVDTGFNRLGLS 138
             E+I  + +  +  VIS    +   ++ +        +CGV     +++DTG  R+G +
Sbjct: 63  TAEEISSLIEHRVHTVISERAHIALIARALRQSADTGATCGVH----VKIDTGMGRIGCA 118

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACAD 168
             EA              L  + +H + AD
Sbjct: 119 PDEACALVQMVCATPGLHLEGVCTHFSVAD 148


>gi|168210753|ref|ZP_02636378.1| alanine racemase family protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711187|gb|EDT23369.1| alanine racemase family protein [Clostridium perfringens B str.
           ATCC 3626]
          Length = 350

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 143/344 (41%), Gaps = 46/344 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           +    ++L  ++NN + +  L  N +  AV+K +AYGLG ++IA  + +  V    V ++
Sbjct: 4   YFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKEIAEFIEDK-VDIIAVGNI 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   L L      I +L  +    +      NLI  + +   L    K     V H Y 
Sbjct: 63  DES--LCLDNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKETKKRV-HIY- 118

Query: 126 LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             VDTG NR+G+    L   ++   N F     ++  I +HL  A D +  +   Q+E F
Sbjct: 119 --VDTGMNRMGIKPNKLDSFIERIKNEFPNL--EIDGIYTHLHNAKDVNYTLK--QIELF 172

Query: 183 RTLISHYKG---IEASLASSSGILLGPNYHFQLT---RPGISLYG--GTDK-INKSHPMQ 233
           ++ +  YK    I   +ASS+ +          T   R G  LYG  G +K I K++   
Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
                 A+ +   K   G+ V YG   K  +D  I +   G   G      G+  E   +
Sbjct: 233 ------AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGL-----GISREIKNN 281

Query: 294 VF----------LGGKGFIKGYMVP--ILGKITMDMTMFDITDS 325
           VF             +  I    VP  ILGK+ M++T+  + + 
Sbjct: 282 VFYDIFRMIYRRFKERSVIFNNNVPVKILGKVNMNITIISMENC 325


>gi|169342418|ref|ZP_02863482.1| alanine racemase family protein [Clostridium perfringens C str.
           JGS1495]
 gi|169299538|gb|EDS81602.1| alanine racemase family protein [Clostridium perfringens C str.
           JGS1495]
          Length = 350

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 141/342 (41%), Gaps = 42/342 (12%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           +    ++L  ++NN + +  L  N +  AV+K  AYGLG ++IA  + +  V    V ++
Sbjct: 4   YFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGEAYGLGSKEIAEFIEDK-VDIIAVGNI 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   L L      I +L  +    +      NLI  + +   L    K     V H Y 
Sbjct: 63  DES--LCLDNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKETKKRV-HIY- 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRT 184
             VDTG NR+G+   +   F     N+    ++  I +HL  A D +  +   Q+E F++
Sbjct: 119 --VDTGMNRMGIKSNKLDSFIERVKNEFPNLEIDGIYTHLHNAKDVNYTLK--QIELFKS 174

Query: 185 LISHYKG---IEASLASSSGILLGPNYHFQLT---RPGISLYG--GTDK-INKSHPMQTV 235
            +  YK    I   +ASS+ +          T   R G  LYG  G +K I K++     
Sbjct: 175 TVEKYKDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY-- 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
               A+ +   K   G+ V YG   K  +D  I +   G   G      G+  E   +VF
Sbjct: 233 ----AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGL-----GISREIKNNVF 283

Query: 296 ----------LGGKGFIKGYMVP--ILGKITMDMTMFDITDS 325
                        +  I    VP  ILGK+ M++T+  + + 
Sbjct: 284 YDIFRMIYRRFKERSVIFNNNVPVKILGKVNMNITIISMENC 325


>gi|325526094|gb|EGD03755.1| alanine racemase [Burkholderia sp. TJI49]
          Length = 133

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%)

Query: 126 LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L++++G NRLG    + + A +   ++    +G+++L++ H A ADD    V+  QL+ F
Sbjct: 2   LKMNSGMNRLGYRPDAFRAAWERAASA--PSIGRITLMM-HFANADD--GEVD-WQLDTF 55

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTA 238
               +   G E S+++S+ +L  P  H    RPG  LYG +      H    P+   +T 
Sbjct: 56  DAATAGIPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMPAMTL 114

Query: 239 EARIILIRKALAGELVSYG 257
            ++II ++     E V YG
Sbjct: 115 TSKIIGVQTLAPEETVGYG 133


>gi|168207987|ref|ZP_02633992.1| alanine racemase family protein [Clostridium perfringens E str.
           JGS1987]
 gi|170660702|gb|EDT13385.1| alanine racemase family protein [Clostridium perfringens E str.
           JGS1987]
          Length = 350

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 142/342 (41%), Gaps = 42/342 (12%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           +    ++L  ++NN + +  L  N +  AV+K +AYGLG ++IA  + +  V    V ++
Sbjct: 4   YFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKEIAEFIEDK-VDIIAVGNI 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   L L      I +L  +    +      NLI  + +   L    K     V H Y 
Sbjct: 63  DES--LCLDNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKETKKRV-HIY- 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRT 184
             VDTG NR+G+   +   F     N+    ++  I +HL  A D +  +   Q+E F++
Sbjct: 119 --VDTGMNRMGIKSNKLDSFIERVKNEFPNLEIDGIYTHLHNAKDVNYTLK--QIELFKS 174

Query: 185 LISHYKG---IEASLASSSGILLGPNYHFQLT---RPGISLYG--GTDK-INKSHPMQTV 235
            +  Y+    I   +ASS+ +          T   R G  LYG  G +K I K++     
Sbjct: 175 TVEKYRDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY-- 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
               A+ +   K   G+ V YG   K  +D  I +   G   G      G+  E   +VF
Sbjct: 233 ----AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGL-----GISREIKNNVF 283

Query: 296 ----------LGGKGFIKGYMVP--ILGKITMDMTMFDITDS 325
                        +  I    VP  ILGK+ M++T+  + + 
Sbjct: 284 YDIFRMIYRRFKERSVIFNNNVPVKILGKVNMNITIISMENC 325


>gi|297518400|ref|ZP_06936786.1| alanine racemase [Escherichia coli OP50]
          Length = 72

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+  
Sbjct: 3   LVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCA 62

Query: 361 IGTR 364
           +  R
Sbjct: 63  LALR 66


>gi|109290351|gb|ABG29384.1| alanine racemase [Mitsuokella multacida]
          Length = 150

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 10  KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +IDL AL++N+  +   + G A+  AVVK +AYG G   +A     AG     V ++ E 
Sbjct: 27  EIDLRALRHNYEEIKKNIRGGAKLCAVVKADAYGHGALAVARVAVEAGASYLAVATLGEA 86

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
           ++LR       I +L  + P + + I D ++  V+  +P
Sbjct: 87  IELREAGFTTPILLLGLVLPDEARDIVDYDVTQVVCELP 125


>gi|325273197|ref|ZP_08139484.1| alanine racemase [Pseudomonas sp. TJI-51]
 gi|324101674|gb|EGB99233.1| alanine racemase [Pseudomonas sp. TJI-51]
          Length = 113

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVACIEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQL 109
            ++LR    +A + +L G     E  +I + +L  V+ S+ QL
Sbjct: 63  ALELRGAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQL 105


>gi|332654849|ref|ZP_08420591.1| putative alanine racemase [Ruminococcaceae bacterium D16]
 gi|332516192|gb|EGJ45800.1| putative alanine racemase [Ruminococcaceae bacterium D16]
          Length = 355

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 28/336 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL I+ +A++NN   +   +  A    VV     G+G  ++A  L +AGV  F V SVEE
Sbjct: 3   RLIIERSAIRNNMAVIKERAQGAALYGVVSGQGGGVGAVRLARLLRDAGVTRFGVNSVEE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
              LR    +    ++      +E++  + D +++  +SSV   L   +   +       
Sbjct: 63  AQLLRESGFETEEILMLRSTVDREELEQLVDLSVVCTVSSVDTGLALNAVAENRSTVAEA 122

Query: 125 ALQVDT--GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            +QVDT  GF    +S  E +   + S       LS I + L      S  V+  QL++F
Sbjct: 123 HIQVDTGLGFGGFLISEPEKILLAYRSLPNV--ALSGIYTQLHAVTGKSQEVDG-QLKQF 179

Query: 183 RTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           + ++   H  G E     ++G   ++   +      R G ++ G   +  K   + TV  
Sbjct: 180 QQVLEAIHQAGFETGTVHAAGSFALMHFDDARLDAVRAGSAILGRCRR-TKGDGLTTVGY 238

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            EA I  +R    G  V       + + + +AV  +GY +G+     G++   S S+   
Sbjct: 239 GEASITEVRWLPKGHTVGADKLITMKKPTRVAVLPVGYQNGF-----GVERPRSQSLLEL 293

Query: 298 GKGF---------IKGYMVPILGKITMDMTMFDITD 324
            + +         + G  V ++G I    T+ ++TD
Sbjct: 294 WRAWRRSRNRTVRLNGQRVRVIGSIGASETILNVTD 329


>gi|219121969|ref|XP_002181328.1| alanine racemase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407314|gb|EEC47251.1| alanine racemase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 710

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 21/139 (15%)

Query: 214 RPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI 273
           R G ++YG     ++   + T++ +   + ++++   GE V Y        +  IA   I
Sbjct: 552 RTGGAIYGQRPAFDELQAVSTLLASVRHVAILKQ---GESVGYDRAYIAPYNVRIATLTI 608

Query: 274 GYADGYPLTL-SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-----TD-SL 326
           G+ADGYP  L +G+           GK  I+G + P+ G + MDM M ++     TD   
Sbjct: 609 GFADGYPRELGNGV-----------GKVQIRGSVFPVAGNVCMDMLMIELGPAEDTDIGS 657

Query: 327 SIEVGDYIQIFGPDIKLDD 345
           ++ VGD   ++GP  + DD
Sbjct: 658 TVAVGDTAVLWGPLDENDD 676


>gi|150372210|dbj|BAF65894.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLY 220
           +++  K        A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDANRFGISMY 151


>gi|223038883|ref|ZP_03609175.1| alanine racemase [Campylobacter rectus RM3267]
 gi|222879856|gb|EEF14945.1| alanine racemase [Campylobacter rectus RM3267]
          Length = 334

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 149/364 (40%), Gaps = 53/364 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L ++  A  NN   + A +G   R   V+KDNAYG G   +     N G++   V +  E
Sbjct: 4   LVLNRAAYINNLTKICAKAGGKDRVILVLKDNAYGHGATIVGREAANYGIKFCAVKNETE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +L  +     I VL  I  G E   F       I +V  L+  +K       H   + 
Sbjct: 64  ARELEPFFEH--ILVLSHIPDGGESERF-------IYAVNSLSLIAKFKKGARVH---IA 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDT  +R G+++ EA      +    L Q+    +H   A++ SS    VQ   F T  +
Sbjct: 112 VDTLMHRNGVAVGEAKAACEAALVHGL-QICGAFTHFRSAEELSSDY-FVQRRNFDTAKA 169

Query: 188 HYKGI--EASLA----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
             + I  E  L     +S+          +  R GI+ YG   + ++S  ++ V +  A 
Sbjct: 170 VVREICGERDLVFHSHNSAATERFGELADECVRVGIAAYGYA-QFDESLELKRVASLWAH 228

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
            +  R    G+   YG +   + D  +A+  +GY DG    +              G+G 
Sbjct: 229 KVSDRVLKKGQCAGYGAKFCASEDMRVAIYDLGYGDGLLRYV--------------GEGE 274

Query: 302 IK-GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS---GTTNYDL 357
           ++      +LGK++MD   F   D+     G+ I +F      DD  + +   GT +YD+
Sbjct: 275 LRTASGQRLLGKMSMD--SFCCEDA-----GEKICVF------DDARVWAKFFGTISYDV 321

Query: 358 LVRI 361
           L ++
Sbjct: 322 LTKL 325


>gi|150372128|dbj|BAF65853.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLY 220
           +++  K        A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKKRPTYVHTANSAASLLQPQIGFDANRFGISMY 151


>gi|30171543|gb|AAP20305.1| Dal [Listeria monocytogenes]
 gi|30171547|gb|AAP20307.1| Dal [Listeria monocytogenes]
 gi|30171561|gb|AAP20314.1| Dal [Listeria monocytogenes]
 gi|30171563|gb|AAP20315.1| Dal [Listeria monocytogenes]
 gi|30171565|gb|AAP20316.1| Dal [Listeria monocytogenes]
 gi|150372134|dbj|BAF65856.1| alanine racemase [Listeria monocytogenes]
 gi|150372136|dbj|BAF65857.1| alanine racemase [Listeria monocytogenes]
 gi|150372138|dbj|BAF65858.1| alanine racemase [Listeria monocytogenes]
 gi|150372142|dbj|BAF65860.1| alanine racemase [Listeria monocytogenes]
 gi|150372144|dbj|BAF65861.1| alanine racemase [Listeria monocytogenes]
 gi|150372146|dbj|BAF65862.1| alanine racemase [Listeria monocytogenes]
 gi|150372148|dbj|BAF65863.1| alanine racemase [Listeria monocytogenes]
 gi|150372152|dbj|BAF65865.1| alanine racemase [Listeria monocytogenes]
 gi|150372156|dbj|BAF65867.1| alanine racemase [Listeria monocytogenes]
 gi|150372158|dbj|BAF65868.1| alanine racemase [Listeria monocytogenes]
 gi|150372162|dbj|BAF65870.1| alanine racemase [Listeria monocytogenes]
 gi|150372168|dbj|BAF65873.1| alanine racemase [Listeria monocytogenes]
 gi|150372172|dbj|BAF65875.1| alanine racemase [Listeria monocytogenes]
 gi|150372174|dbj|BAF65876.1| alanine racemase [Listeria monocytogenes]
 gi|150372178|dbj|BAF65878.1| alanine racemase [Listeria monocytogenes]
 gi|150372182|dbj|BAF65880.1| alanine racemase [Listeria monocytogenes]
 gi|150372184|dbj|BAF65881.1| alanine racemase [Listeria monocytogenes]
 gi|150372186|dbj|BAF65882.1| alanine racemase [Listeria monocytogenes]
 gi|150372188|dbj|BAF65883.1| alanine racemase [Listeria monocytogenes]
 gi|150372190|dbj|BAF65884.1| alanine racemase [Listeria monocytogenes]
 gi|150372198|dbj|BAF65888.1| alanine racemase [Listeria monocytogenes]
 gi|150372200|dbj|BAF65889.1| alanine racemase [Listeria monocytogenes]
 gi|150372202|dbj|BAF65890.1| alanine racemase [Listeria monocytogenes]
 gi|150372204|dbj|BAF65891.1| alanine racemase [Listeria monocytogenes]
 gi|150372206|dbj|BAF65892.1| alanine racemase [Listeria monocytogenes]
 gi|150372208|dbj|BAF65893.1| alanine racemase [Listeria monocytogenes]
 gi|150372214|dbj|BAF65896.1| alanine racemase [Listeria monocytogenes]
 gi|150372218|dbj|BAF65898.1| alanine racemase [Listeria monocytogenes]
 gi|150372222|dbj|BAF65900.1| alanine racemase [Listeria monocytogenes]
 gi|150372224|dbj|BAF65901.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLY 220
           +++  K        A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|328676397|gb|AEB27267.1| alanine racemase [Francisella cf. novicida Fx1]
          Length = 231

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 95/220 (43%), Gaps = 27/220 (12%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH----VNSVQLER 181
           L  D G  R G    + +   +   N     ++L  SH+     P+ +     +   +++
Sbjct: 2   LDFDCGMGRFGFYKDDFIKHLYKLKNAGFSNITLF-SHI-----PTGYNGFDKSKKYIDK 55

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
             +L +  K ++ + ++S   L   ++  +  RP  ++ G      +   ++  +  +A 
Sbjct: 56  ILSLATQTK-LKYTFSNSPVSLFSYDFQQEYIRPCSAILGYD---QEPQEIKFSLALKAC 111

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II IR    G+ +SY  +    RD+ +A+  IGYADG    +      H  S  +     
Sbjct: 112 IISIRDIPKGQYISYANEYFCDRDTTVAILNIGYADGLGCKI------HKDSYLI----- 160

Query: 302 IKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD 340
           IK    PIL  I MD    DI+     +++ D I++FGP+
Sbjct: 161 IKDTKCPILA-INMDYLYIDISAIKHQLKILDMIELFGPN 199


>gi|30171545|gb|AAP20306.1| Dal [Listeria monocytogenes]
 gi|30171551|gb|AAP20309.1| Dal [Listeria monocytogenes]
 gi|30171553|gb|AAP20310.1| Dal [Listeria monocytogenes]
 gi|150372132|dbj|BAF65855.1| alanine racemase [Listeria monocytogenes]
 gi|150372140|dbj|BAF65859.1| alanine racemase [Listeria monocytogenes]
 gi|150372154|dbj|BAF65866.1| alanine racemase [Listeria monocytogenes]
 gi|150372164|dbj|BAF65871.1| alanine racemase [Listeria monocytogenes]
 gi|150372166|dbj|BAF65872.1| alanine racemase [Listeria monocytogenes]
 gi|150372170|dbj|BAF65874.1| alanine racemase [Listeria monocytogenes]
 gi|150372180|dbj|BAF65879.1| alanine racemase [Listeria monocytogenes]
 gi|150372192|dbj|BAF65885.1| alanine racemase [Listeria monocytogenes]
 gi|150372194|dbj|BAF65886.1| alanine racemase [Listeria monocytogenes]
 gi|150372196|dbj|BAF65887.1| alanine racemase [Listeria monocytogenes]
 gi|150372212|dbj|BAF65895.1| alanine racemase [Listeria monocytogenes]
 gi|150372216|dbj|BAF65897.1| alanine racemase [Listeria monocytogenes]
 gi|150372220|dbj|BAF65899.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLY 220
           +++  K        A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|218461935|ref|ZP_03502026.1| putative alanine racemase [Rhizobium etli Kim 5]
          Length = 74

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/54 (61%), Positives = 36/54 (66%)

Query: 7  LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
          LRL +DLTAL  NW  M   SG AR AAVVK +AYGLG E    ALY AG +DF
Sbjct: 21 LRLTVDLTALTENWRDMAHRSGAARAAAVVKADAYGLGIEDAGEALYTAGARDF 74


>gi|50954714|ref|YP_062002.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951196|gb|AAT88897.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 236

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 31/179 (17%)

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELV 254
           S A  +G LLGP            L+G    ++  HP +  +     I+ +++  A   V
Sbjct: 84  STAVDAGALLGPE-----------LFG----LDPRHPSRLALRLVGEIVAVKRVAARRGV 128

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
           SYG   +  R S + + A+GYADG    L  + S   P       G ++G    + G+I 
Sbjct: 129 SYGYTYRTERPSTLVLVALGYADG----LLRVASNRGPVQV----GTVRGR---VSGRIA 177

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVALASGTTNYDLLVRIGTRYAKFY 369
           MD  + DI D+ ++  GD + +FG   + +    D A A G     +  R+G R  + Y
Sbjct: 178 MDQFVVDIGDADTLP-GDPVVVFGDPGRGEPTVLDWADALGVAAPVITSRLGRRIERRY 235


>gi|325128702|gb|EGC51567.1| alanine racemase, catabolic [Neisseria meningitidis N1568]
          Length = 89

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 14/97 (14%)

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331
           A GYADGYP          +PS        + G +  ++G+++MDM   ++ D+    +G
Sbjct: 3   ACGYADGYP--------RRAPS---NSPVAVDGKLTRVIGRVSMDMMTIEL-DASQEGLG 50

Query: 332 DYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
             ++++G  + ++ VA A+GT  Y+L+  I  + AKF
Sbjct: 51  HEVELWGDTVNINTVAEAAGTIPYELMCNI--KRAKF 85


>gi|34764268|ref|ZP_00145113.1| Alanine racemase, biosynthetic [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27885956|gb|EAA23287.1| Alanine racemase, biosynthetic [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 79

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 211 QLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAV 270
            L R GI +Y  T    K+  ++ + T ++R++ I+K      VSYG    L  DS  AV
Sbjct: 7   MLVRLGIGMYSFTGN-KKTSYLKNIFTIKSRVLFIKKVNKDSFVSYGRHYTLPADSTYAV 65

Query: 271 AAIGYADG 278
             IGYADG
Sbjct: 66  LPIGYADG 73


>gi|255322065|ref|ZP_05363213.1| alanine racemase [Campylobacter showae RM3277]
 gi|255300878|gb|EET80147.1| alanine racemase [Campylobacter showae RM3277]
          Length = 333

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 139/347 (40%), Gaps = 59/347 (17%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ-ARIFVLYGI 86
           G  R   V+KDNAYG G   +     + G++     +V+  V+ R   P    I +L  I
Sbjct: 24  GKDRVILVLKDNAYGHGAALVGREAASYGIK---FCAVKNEVEARELEPFFEHILILSHI 80

Query: 87  HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146
             G E   F       I SV  ++  +K       H   + VDT  +R G+S+ E     
Sbjct: 81  PNGGESERF-------IYSVNDISLIAKFKKGARVH---IAVDTLMHRNGVSVGEVRAAC 130

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI---------EASLA 197
            ++    L Q+    +H   A++ SS    VQ   F    +  + I           S A
Sbjct: 131 ESALAHGL-QICGAFTHFRSAEELSSDY-FVQRRNFAAAKAVVREICGDGLVFHSHNSAA 188

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
           +     L   Y     R GI+ YG   + + S  ++ V +  A  +  R    G+   YG
Sbjct: 189 TERFGELADEY----VRVGIAAYG-YAQFDDSLGLKRVASLWAHKVSGRVLKKGQCAGYG 243

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
            +   + D  IAV  +GY DG  L  +G     +     GG+         +LGK++MD 
Sbjct: 244 AKFCASEDMQIAVYDLGYGDGL-LRYTGEGELKTA----GGQ--------RLLGKMSMD- 289

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS---GTTNYDLLVRI 361
             F   D+     GD I +F      DD  + +   GT +YD+L ++
Sbjct: 290 -SFCCEDA-----GDRICVF------DDARVWADFFGTISYDVLTKL 324


>gi|260890258|ref|ZP_05901521.1| alanine racemase [Leptotrichia hofstadii F0254]
 gi|260859878|gb|EEX74378.1| alanine racemase [Leptotrichia hofstadii F0254]
          Length = 77

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 6  FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           + L+I+   LK N   + +++ N     V+KDNAYGLG E + P L       F V  +
Sbjct: 2  LVNLEINRENLKRNLEKIRSINKN--IVCVIKDNAYGLGIENVFPILLENNCNYFAVAYI 59

Query: 66 EEGVKLR 72
          EE +K+R
Sbjct: 60 EEAIKIR 66


>gi|153841826|ref|ZP_01993440.1| alanine racemase 1 [Vibrio parahaemolyticus AQ3810]
 gi|149745444|gb|EDM56695.1| alanine racemase 1 [Vibrio parahaemolyticus AQ3810]
          Length = 129

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   + A +  ++  AVVK N YG G   +A    +A    F V  +EE ++
Sbjct: 11  IDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHANHADA--FGVARIEEALQ 68

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQL 109
           LR       I +L G + PG   ++   N+  V+    QL
Sbjct: 69  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQL 108


>gi|33322502|gb|AAQ06978.1|AF496305_1 alanine racemase [Lactobacillus delbrueckii subsp. lactis]
          Length = 99

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 9  LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
          L I+L A+K N   + + L    +   VVK NAYG G  ++AP +  AG   F V  ++E
Sbjct: 10 LHINLAAIKENTRQAKDHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGADGFCVAMLDE 69

Query: 68 GVKLR 72
          G++LR
Sbjct: 70 GLELR 74


>gi|256027409|ref|ZP_05441243.1| alanine racemase, biosynthetic [Fusobacterium sp. D11]
          Length = 98

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 15/105 (14%)

Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324
           DS  AV  IGYADG    LS            GG   I  +   I+G I MDMTM  I  
Sbjct: 4   DSTYAVLPIGYADGLKKYLSK-----------GGYVLINNHRCEIIGNICMDMTMIRIPK 52

Query: 325 SL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
            +  S+++GD + +   DI LD++ +      ++ +  IG R  +
Sbjct: 53  EIENSVKIGDEVTVINADI-LDNLNIPELCV-WEFMTGIGKRVKR 95


>gi|30171597|gb|AAP20332.1| Dal [Listeria monocytogenes]
          Length = 151

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTVEEARQIETTIASDSQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLY 220
           +++  K       +A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKNRPTYVHVANSAASLLQPQIGFDAIRFGISMY 151


>gi|154497027|ref|ZP_02035723.1| hypothetical protein BACCAP_01320 [Bacteroides capillosus ATCC
           29799]
 gi|150273426|gb|EDN00554.1| hypothetical protein BACCAP_01320 [Bacteroides capillosus ATCC
           29799]
          Length = 355

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 134/345 (38%), Gaps = 29/345 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L I+  A+K N   +   +G A   A +  +A G G   +A  L + G+  F V+   + 
Sbjct: 4   LIIERQAVKQNIAVVRERAGRAAIYAALTGDAGGAGLVDMARLLRDEGIGRFAVSEAADA 63

Query: 69  VKLRLYT-PQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA- 125
             LR        I +L      +E + + D N +  I S+      + L     +   A 
Sbjct: 64  AALRKAGFVDEEILMLRSTADREELEQLVDVNAVCTIGSIDAGLALNGLAESRSTVAEAH 123

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS--HLACADDPSSHVNSVQLERFR 183
           +QVDTG    G    E         N     +S I +  H   AD   +   + Q++ F+
Sbjct: 124 IQVDTGLGFGGFLCTEPEKVLSAYRNLPNVAISGIYTQLHSVKADGKDA---AAQIQSFQ 180

Query: 184 TLISHYK--GIEASLASSSGILLGPNYHFQL---TRPGISLYGGTDKINKSHPMQTVVTA 238
           TL+   +  G E     ++G     +Y   L    R G  L G   +  K   +Q V   
Sbjct: 181 TLLEAIRSAGFETGTVHAAGSFALLHYDDALLDAVRAGSVLLGRCRR-TKGDGLQRVGYG 239

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           EA +  +R   AG  V       L R + + V  +GY +G+     G+     P  +   
Sbjct: 240 EASLEEVRWLPAGHTVGSEQPVTLKRPTRVGVLPVGYQNGF-----GVARVRDPGFWAAI 294

Query: 299 KGFIKGYM---------VPILGKITMDMTMFDITDSLSIEVGDYI 334
           + +++G           V ++G+I    T+ D+TD +    GD +
Sbjct: 295 RRWLRGRRISVRIDGQKVKVIGRIGAMETLLDVTD-MKCSSGDLV 338


>gi|28493463|ref|NP_787624.1| alanine racemase [Tropheryma whipplei str. Twist]
 gi|28572425|ref|NP_789205.1| alanine racemase I [Tropheryma whipplei TW08/27]
 gi|28410556|emb|CAD66942.1| alanine racemase I [Tropheryma whipplei TW08/27]
 gi|28476504|gb|AAO44593.1| alanine racemase [Tropheryma whipplei str. Twist]
          Length = 386

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 118/295 (40%), Gaps = 41/295 (13%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           SN   +  I L  LK N   +      A+   V+K NA G G  ++A     +G+++F V
Sbjct: 8   SNSHAQAFISLGTLKKNLLWLQNEVAPAKVFMVIKANANGHGTMRVAEVAKMSGIRNFAV 67

Query: 63  TSVEEGVKL-RLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYS----KL 115
              +E + + R  +P  R+F  + I P  E +  + + N+   I +  QL + +    K 
Sbjct: 68  LLPKEALLIKRALSPGVRVFT-WHITPDCEDLPSLIENNIEIGIGAEWQLRYIASCVKKT 126

Query: 116 MSCGVSHPYA-----LQVDTGFNRLGLSLQE-------ALDFTHNSFNKKLGQLSLIISH 163
           M+C V   Y      L++DTG +R G  +++       A DF      K  G  S + + 
Sbjct: 127 MTCEVLSGYKPALIHLKLDTGLSRGGCGVKDWQNLVCLAQDFQEMGLIKITGFWSHLSNT 186

Query: 164 LACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT 223
               D  S  + +  +  +    S        +A+S   L  P       R G+S +G  
Sbjct: 187 SPEEDRRSLKIFTENVTPYLASYSRRARPIMHIAASVAALGLPESRLDYVRLGLSCFGYY 246

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
           +K      ++ V+T  A II                 K   +   A+ A G+ADG
Sbjct: 247 EK----EELKGVMTLVAPII-----------------KFLPEQGRAIIACGFADG 280


>gi|218515609|ref|ZP_03512449.1| alanine racemase protein [Rhizobium etli 8C-3]
          Length = 68

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 9  LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN 54
          L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+
Sbjct: 23 LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYD 68


>gi|150372130|dbj|BAF65854.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLY 220
           +++  K        A+S+  LL P   F   R GI +Y
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGILMY 151


>gi|30171593|gb|AAP20330.1| Dal [Listeria monocytogenes]
          Length = 151

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTVEEARQIETMIASDSQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLY 220
           +++  K       +A+ +  LL P   F  TR GIS+Y
Sbjct: 114 ILTSLKNRPTYVHVANPAASLLQPQIGFDATRFGISMY 151


>gi|213859640|ref|ZP_03385344.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 125

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 5/101 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVEEGV 69
           +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G  D F + ++EE +
Sbjct: 9   LDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNLEEAI 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQL 109
            LR    +  I +L G    Q+   +DT  L   I S  QL
Sbjct: 66  TLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQL 106


>gi|30171573|gb|AAP20320.1| Dal [Listeria monocytogenes]
          Length = 151

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTVEEARQIETTITSDNQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLY 220
           +++  K     +  A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|30171571|gb|AAP20319.1| Dal [Listeria monocytogenes]
 gi|30171575|gb|AAP20321.1| Dal [Listeria monocytogenes]
 gi|150372150|dbj|BAF65864.1| alanine racemase [Listeria monocytogenes]
 gi|150372160|dbj|BAF65869.1| alanine racemase [Listeria monocytogenes]
 gi|150372176|dbj|BAF65877.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLY 220
           +++  K     +  A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|30171595|gb|AAP20331.1| Dal [Listeria monocytogenes]
          Length = 151

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLTKFQT 113

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLY 220
           +++  K     +  A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|150372232|dbj|BAF65905.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +  EA        N    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTTDEARRIETTIANDNQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLY 220
           +++  K     +  A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|227432609|ref|ZP_03914587.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351645|gb|EEJ41893.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 226

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 27/178 (15%)

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY----HFQLTRPGI 217
           +H A AD P+      Q+  ++ L +H   +E +    +   +   Y    +  + R GI
Sbjct: 20  THFATADTPNVDYVDFQISEWQRL-THDLPVEPNENHFANTGIATWYPEKINTDIVRLGI 78

Query: 218 SLYGGTDKINKSHPMQTV-------VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAV 270
            L+G    IN S P+ ++       ++ +A+++  +    G  V YG +     D  +  
Sbjct: 79  GLFG----INGSVPIMSMPFELIPALSLKAKVVNSKPLKKGNAVGYGAEYHAPNDGYLIT 134

Query: 271 AAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
             IG++DGYP   SG+ +               G +  I+G + MD +M  +T+ +++
Sbjct: 135 IPIGHSDGYPFNGSGMRAL-----------VADGQIGHIVGGVAMDQSMIFVTNPVAV 181


>gi|30171549|gb|AAP20308.1| Dal [Listeria monocytogenes]
          Length = 151

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLY 220
           +++  K     +  A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|219820855|gb|ACL37548.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820859|gb|ACL37550.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820861|gb|ACL37551.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820863|gb|ACL37552.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820867|gb|ACL37554.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820869|gb|ACL37555.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820873|gb|ACL37557.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820883|gb|ACL37562.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820885|gb|ACL37563.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820887|gb|ACL37564.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820889|gb|ACL37565.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820891|gb|ACL37566.1| alanine racemase-like protein [Listeria monocytogenes]
          Length = 153

 Score = 43.9 bits (102), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 58  LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 117

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTRPGIS 218
           +++  K        A+S+  LL P   F   R GIS
Sbjct: 118 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGIS 153


>gi|317121371|ref|YP_004101374.1| alanine racemase [Thermaerobacter marianensis DSM 12885]
 gi|315591351|gb|ADU50647.1| alanine racemase [Thermaerobacter marianensis DSM 12885]
          Length = 514

 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 137/371 (36%), Gaps = 49/371 (13%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL  L  N  ++   +    R  AVVK + YGLG E  A  L  AG       ++E 
Sbjct: 16  IEVDLDVLAANLAAVRRFVRPGTRILAVVKGDGYGLGAEMAARTLVAAGADGLGTDTLEA 75

Query: 68  GVKLRLYTPQARIFVLYGIHP---------GQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            ++LR     A I V   + P         G    + D   +  ++   +     +    
Sbjct: 76  ALRLRRAGITAPILVFQPVDPALAHHWVREGLTATVHDETTLRRLAQAAESARAGQAART 135

Query: 119 GVSH-PYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           G    P A  L+VD GF R G            + +    ++  + +H   A  P   + 
Sbjct: 136 GSPPGPCAVHLEVDMGFGRGGFHPDRVAAALAEAQSLPGIRVEGLYAHFPTAARPGLALR 195

Query: 176 SVQLERFRTLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINK---- 228
            +            +G+   L   A S  ++L  +    + R G  LYG   +  +    
Sbjct: 196 LLDRFLRLVQRLEQQGLRPPLVHCAESHLLVLASHAQLDMVRVGNLLYGYAPRAARRAGL 255

Query: 229 --SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG-YPLTLSG 285
               P + VV    R+  +R+A + +    GG  +    + +AV  +G ADG  P+  + 
Sbjct: 256 AVRPPSRLVV----RVGAVRRAASLDPGYRGGWARP--GAPVAVLPVGLADGLRPVREAR 309

Query: 286 LDSEH------------SPSVFLGGKGF-------IKGYMVPILGKITMDMTMFDITDSL 326
             S+               S  LG  G        + G  VP+ G+  M+  + D T  L
Sbjct: 310 FWSDRLVILARRLLGALGASRVLGAAGLPPGPRLRVGGREVPLRGEFMMNHCLLDAT-GL 368

Query: 327 SIEVGDYIQIF 337
            +E G  +++ 
Sbjct: 369 DLEPGQEVELV 379


>gi|257466861|ref|ZP_05631172.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 360

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 138/344 (40%), Gaps = 61/344 (17%)

Query: 21  HSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78
           H++N L    R     V+K NAYG G  ++A     AGV    V   EE  K+     + 
Sbjct: 17  HNINVLRKWKRKDIIPVIKANAYGHGMLEMAKTCVQAGVTQVAVARYEEAKKI----LED 72

Query: 79  RIFVLYGIHPGQEKIIFDT-------NLIPVIS-SVPQLTFYSKLMSCGVSHPYALQV-- 128
             F         + +IF++       +  P +  S+  L    K +   +S P  +QV  
Sbjct: 73  SYFQSLSKECSFQILIFESIGDFSLLDHFPRMDISINSLEELEKALEYHIS-PKKMQVKI 131

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL----IISH---------LACADDPSSHVN 175
           D  F R G+  ++ L F    F KK+ + +L    I SH         L C    SS V 
Sbjct: 132 DFSFGRNGIQ-EKDLPF----FIKKVKEENLTFKGIFSHLFSCSYEDGLLCIKKFSSLVQ 186

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            +  ERF  +  H +   AS      I+          R G+  YG  +       +Q  
Sbjct: 187 EMGKERFDRI--HLQNSAASYNYDCDIVTD-------IRVGMLTYGLQEPGYFHEELQRA 237

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDS--LIAVAAIGYADGYPLTLSGLDSEHSPS 293
              + +I  IR     + ++Y G++ +   S    A   IGYADG+     G ++E+   
Sbjct: 238 FCLKGKIDSIRCLENMKYLAYEGKEDVGMKSAKWAAKIKIGYADGF-----GKENENGSC 292

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           +        K Y +    ++TMD T  ++ +   ++VGD + +F
Sbjct: 293 IIQR-----KEYRI---AEVTMDNTFLEVDE--RVKVGDEVLLF 326


>gi|315918009|ref|ZP_07914249.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691884|gb|EFS28719.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 359

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 138/344 (40%), Gaps = 61/344 (17%)

Query: 21  HSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78
           H++N L    R     V+K NAYG G  ++A     AGV    V   EE  K+     + 
Sbjct: 16  HNINVLRKWKRKDIIPVIKANAYGHGMLEMAKTCVQAGVTQVAVARYEEAKKI----LED 71

Query: 79  RIFVLYGIHPGQEKIIFDT-------NLIPVIS-SVPQLTFYSKLMSCGVSHPYALQV-- 128
             F         + +IF++       +  P +  S+  L    K +   +S P  +QV  
Sbjct: 72  SYFQSLSKECSFQILIFESIGDFSLLDHFPRMDISINSLEELEKALEYHIS-PKKMQVKI 130

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL----IISH---------LACADDPSSHVN 175
           D  F R G+  ++ L F    F KK+ + +L    I SH         L C    SS V 
Sbjct: 131 DFSFGRNGIQ-EKDLPF----FIKKVKEENLTFKGIFSHLFSCSYEDGLLCIKKFSSLVQ 185

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            +  ERF  +  H +   AS      I+          R G+  YG  +       +Q  
Sbjct: 186 EMGKERFDRI--HLQNSAASYNYDCDIVTD-------IRVGMLTYGLQEPGYFHEELQRA 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDS--LIAVAAIGYADGYPLTLSGLDSEHSPS 293
              + +I  IR     + ++Y G++ +   S    A   IGYADG+     G ++E+   
Sbjct: 237 FCLKGKIDSIRCLENMKYLAYEGKEDVGMKSAKWAAKIKIGYADGF-----GKENENGSC 291

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           +        K Y +    ++TMD T  ++ +   ++VGD + +F
Sbjct: 292 IIQR-----KEYRI---AEVTMDNTFLEVDE--RVKVGDEVLLF 325


>gi|219820857|gb|ACL37549.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820865|gb|ACL37553.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820875|gb|ACL37558.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820877|gb|ACL37559.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820879|gb|ACL37560.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820881|gb|ACL37561.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820893|gb|ACL37567.1| alanine racemase-like protein [Listeria monocytogenes]
          Length = 153

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 58  LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 117

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTRPGIS 218
           +++  K        A+S+  LL P   F   R GIS
Sbjct: 118 ILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGIS 153


>gi|222824133|ref|YP_002575707.1| alanine racemase [Campylobacter lari RM2100]
 gi|222539355|gb|ACM64456.1| alanine racemase [Campylobacter lari RM2100]
          Length = 335

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 139/365 (38%), Gaps = 54/365 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   + + +G   +   V KDNAYG G + +AP     GV   FV    E
Sbjct: 4   IKIDRLAYEYNLDLIASKAGGYEKVICVFKDNAYGHGAKLLAPIARAKGVN--FVAVKNE 61

Query: 68  GVKLRLYTPQARIFVLYGIHP---GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                L      I +L   HP     EK I+  N    I  + + T              
Sbjct: 62  VEAKELENIFDNILIL-SHHPHGNESEKFIYALNDKNDIKKLKKNT------------KI 108

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERF 182
            L +DT  +R G+ L+E  +      +  L  L  ++ H A +D  D S  V     +  
Sbjct: 109 HLVIDTNMHRNGILLEEIQEVLQGLKSNNL-ILHGVMMHFAGSDEVDASYFVQKQNFQHA 167

Query: 183 RTLISHYKGIEASL----ASSSGILLGPN--YHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           + +I +    EA      + +S  L   N     +  R G+  +G       S  ++ V+
Sbjct: 168 KKIIYNLLQKEAKSLVFHSHNSEALFRANTLEDDEYCRVGLVQFGYA---YFSKDLRKVL 224

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  A  +  R    G+ V YGG      D  IA   +GYADG                + 
Sbjct: 225 SLWAEKLSQRVLKKGQSVGYGGMYSAKEDIEIATYDLGYADGLLR-------------YD 271

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G K F       ILGK++M        DS S E    +     D  +  +A    T NY+
Sbjct: 272 GKKDFFLPNGKKILGKMSM--------DSFSCENDSEVICVLNDANV--MASFFNTINYE 321

Query: 357 LLVRI 361
           +LV++
Sbjct: 322 ILVKL 326


>gi|257452771|ref|ZP_05618070.1| alanine racemase [Fusobacterium sp. 3_1_5R]
          Length = 360

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 137/342 (40%), Gaps = 57/342 (16%)

Query: 21  HSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL------R 72
           H++N L    R     V+K NAYG G  ++A     AGV    V   EE  K+      +
Sbjct: 17  HNINVLRKWKRKDIIPVIKANAYGHGMLEMAKTCVQAGVTQVAVARYEEAKKILEDSYFQ 76

Query: 73  LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV--DT 130
             + +    +L     G   ++ D   + +  S+  L    K +   +S P  +QV  D 
Sbjct: 77  SLSKECSFQILIFESIGDFSLLDDFPRMDI--SINSLEELEKALEYHIS-PKKMQVKIDF 133

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSL----IISH---------LACADDPSSHVNSV 177
            F R G+  ++ L F    F KK+ + +L    I SH         L C    SS V  +
Sbjct: 134 SFGRNGIQ-EKDLPF----FIKKVKEENLTFKGIFSHLFSSSYEDGLLCIKKFSSLVQEM 188

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
             ERF  +  H +   AS      I+          R G+  YG  +       +Q    
Sbjct: 189 GKERFDRI--HLQNSAASYNYDCDIVTD-------IRVGMLTYGLQEPGYFHEELQRAFC 239

Query: 238 AEARIILIRKALAGELVSYGGQKK--LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            + +I  IR     + ++Y G++   +      A   IGYADG+     G ++E+   + 
Sbjct: 240 LKGKIDSIRCVENMKYLAYEGKEDVGMKFAKWAAKIKIGYADGF-----GKENENGSCII 294

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
                  K Y +    ++TMD T  ++ +   ++VGD + +F
Sbjct: 295 QR-----KEYRI---AEVTMDNTFLEVDE--RVKVGDEVLLF 326


>gi|317059312|ref|ZP_07923797.1| alanine racemase [Fusobacterium sp. 3_1_5R]
 gi|313684988|gb|EFS21823.1| alanine racemase [Fusobacterium sp. 3_1_5R]
          Length = 359

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 137/342 (40%), Gaps = 57/342 (16%)

Query: 21  HSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL------R 72
           H++N L    R     V+K NAYG G  ++A     AGV    V   EE  K+      +
Sbjct: 16  HNINVLRKWKRKDIIPVIKANAYGHGMLEMAKTCVQAGVTQVAVARYEEAKKILEDSYFQ 75

Query: 73  LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV--DT 130
             + +    +L     G   ++ D   + +  S+  L    K +   +S P  +QV  D 
Sbjct: 76  SLSKECSFQILIFESIGDFSLLDDFPRMDI--SINSLEELEKALEYHIS-PKKMQVKIDF 132

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSL----IISH---------LACADDPSSHVNSV 177
            F R G+  ++ L F    F KK+ + +L    I SH         L C    SS V  +
Sbjct: 133 SFGRNGIQ-EKDLPF----FIKKVKEENLTFKGIFSHLFSSSYEDGLLCIKKFSSLVQEM 187

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
             ERF  +  H +   AS      I+          R G+  YG  +       +Q    
Sbjct: 188 GKERFDRI--HLQNSAASYNYDCDIVTD-------IRVGMLTYGLQEPGYFHEELQRAFC 238

Query: 238 AEARIILIRKALAGELVSYGGQKK--LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            + +I  IR     + ++Y G++   +      A   IGYADG+     G ++E+   + 
Sbjct: 239 LKGKIDSIRCVENMKYLAYEGKEDVGMKFAKWAAKIKIGYADGF-----GKENENGSCII 293

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
                  K Y +    ++TMD T  ++ +   ++VGD + +F
Sbjct: 294 QR-----KEYRI---AEVTMDNTFLEVDE--RVKVGDEVLLF 325


>gi|241667406|ref|ZP_04754984.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254875955|ref|ZP_05248665.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254841976|gb|EET20390.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 427

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 75/363 (20%), Positives = 149/363 (41%), Gaps = 49/363 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT---- 63
           ++ID++A K+N   + ++ G+  +  AV+K +AYG G + +  A  ++   D        
Sbjct: 42  VEIDVSAYKHNLKVVKSIIGDDVKLCAVMKSDAYGHGLDNLIDATVSSSAVDCIAAVDNK 101

Query: 64  -----------SVEEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLT 110
                      S  +   LR+  P  +  ++  I+ G   E+II       +IS   Q  
Sbjct: 102 EFAIISPKIQQSGRDITALRI-APVTKSELIQAINNGWDIEEIIGSYEQAKIISDTAQQ- 159

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC---A 167
             S+++   V    ++ ++T   R+     E +       N K+     +++H A    +
Sbjct: 160 -MSEILGKKVIIKVSINIETAMGRMAFRKVEDIKKAMKLPNIKVVG---VMTHFAKDYES 215

Query: 168 DDPSSHVNSVQLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT- 223
           +  +      QL +F  ++S     +G    +A+S      P     + R G  +YG   
Sbjct: 216 ESVAEPATKQQLAKFDEIVSQLDLPEGTIQHVANSGAAAKYPWARRDMVRAGSLIYGEDL 275

Query: 224 -DKINKSHPMQTVVTA-EARIILIRKALAGEL-VSYGGQK--KLTRDSLIAVAAIGYADG 278
            D  +  H ++ V+ +  + + +I + +     ++Y  ++  +  R S  A    GY  G
Sbjct: 276 DDLQDPKHELRPVMKSFRSEVAIIERDIPPHSPINYDAEQYTRSDRKSTTATLRTGYNYG 335

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS---LSIEVGDYIQ 335
           +P            +     +  I G   P++GK +M+M + DITD      ++VGD   
Sbjct: 336 FP----------QRAYKSKMQVIIDGVKYPVIGKTSMNMLVVDITDEPKDKRVKVGDQAL 385

Query: 336 IFG 338
           + G
Sbjct: 386 LVG 388


>gi|323359913|ref|YP_004226309.1| alanine racemase [Microbacterium testaceum StLB037]
 gi|323276284|dbj|BAJ76429.1| alanine racemase [Microbacterium testaceum StLB037]
          Length = 347

 Score = 42.7 bits (99), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 9/162 (5%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++DL A   N H +      A    VVKD+AY  G E +     + GV+ F    V  G 
Sbjct: 6   RVDLDAFARNLHRVRDAVAPAEPMFVVKDDAYAHGLEVLVRRARSEGVRWFGAFDVVTGA 65

Query: 70  KLR-LYTPQARIFV--LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            +R +  P ARIFV  + G       I  D +L   +     L   + L + G +  + L
Sbjct: 66  AVRAIAGPDARIFVWLIGGADDLAAGIAADLDL--GVGDQSLLDDLAALTADGSARVH-L 122

Query: 127 QVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLA 165
           ++DTG +R G+  ++   AL  T     +   +   I SH++
Sbjct: 123 KIDTGLHRNGIRPEDWDAALARTATLVEQGRVRFEGIWSHIS 164


>gi|30171577|gb|AAP20322.1| Dal [Listeria monocytogenes]
 gi|30171579|gb|AAP20323.1| Dal [Listeria monocytogenes]
 gi|30171581|gb|AAP20324.1| Dal [Listeria monocytogenes]
 gi|30171589|gb|AAP20328.1| Dal [Listeria monocytogenes]
 gi|30171591|gb|AAP20329.1| Dal [Listeria monocytogenes]
 gi|150372242|dbj|BAF65910.1| alanine racemase [Listeria monocytogenes]
 gi|150372244|dbj|BAF65911.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +  EA             QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLY 220
           +++  K     +  A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|30171555|gb|AAP20311.1| Dal [Listeria monocytogenes]
 gi|30171557|gb|AAP20312.1| Dal [Listeria monocytogenes]
 gi|30171559|gb|AAP20313.1| Dal [Listeria monocytogenes]
 gi|30171567|gb|AAP20317.1| Dal [Listeria monocytogenes]
 gi|30171569|gb|AAP20318.1| Dal [Listeria monocytogenes]
 gi|30171583|gb|AAP20325.1| Dal [Listeria monocytogenes]
 gi|30171585|gb|AAP20326.1| Dal [Listeria monocytogenes]
 gi|30171587|gb|AAP20327.1| Dal [Listeria monocytogenes]
 gi|150372226|dbj|BAF65902.1| alanine racemase [Listeria monocytogenes]
 gi|150372228|dbj|BAF65903.1| alanine racemase [Listeria monocytogenes]
 gi|150372230|dbj|BAF65904.1| alanine racemase [Listeria monocytogenes]
 gi|150372234|dbj|BAF65906.1| alanine racemase [Listeria monocytogenes]
 gi|150372236|dbj|BAF65907.1| alanine racemase [Listeria monocytogenes]
 gi|150372238|dbj|BAF65908.1| alanine racemase [Listeria monocytogenes]
 gi|150372240|dbj|BAF65909.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +  EA             QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLY 220
           +++  K     +  A+S+  LL P   F   R GIS+Y
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|167949694|ref|ZP_02536768.1| alanine racemase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 62

 Score = 42.0 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 11/64 (17%)

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           V YGG  +      +AV  +GY DGYP         H P    G    ++G  +P++G++
Sbjct: 4   VGYGGSYRCPEPMPVAVIGVGYGDGYP--------RHVPG---GTPVLLRGRRLPLVGRV 52

Query: 314 TMDM 317
           +MDM
Sbjct: 53  SMDM 56


>gi|219820871|gb|ACL37556.1| alanine racemase-like protein [Listeria monocytogenes]
          Length = 153

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T
Sbjct: 58  LKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQT 117

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGIS 218
           +++  K     +  A+S+  LL P   F   R GIS
Sbjct: 118 ILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGIS 153


>gi|78776580|ref|YP_392895.1| alanine racemase [Sulfurimonas denitrificans DSM 1251]
 gi|78497120|gb|ABB43660.1| Alanine racemase [Sulfurimonas denitrificans DSM 1251]
          Length = 338

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 122/304 (40%), Gaps = 46/304 (15%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90
           + A V+KDNAYG G  +++      G++   V +  E      +   + I VL  I    
Sbjct: 27  KIALVLKDNAYGHGLVEMSSMAKEYGIKRAVVRTHREAEIAESFF--SYILVLGDIPTMV 84

Query: 91  EKII-FDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS 149
            K I +  N +  I   P+ T               L++D+G +R G+    A+D    +
Sbjct: 85  SKTIRYTINDLESIDKFPKET------------RVELKIDSGMHRNGI----AIDEIEEA 128

Query: 150 FNKKLGQ---LSLIISHLACADDPSSHV-----NSVQLERF-RTLISHYKGIEASLASSS 200
           F K   +   L  + +H   AD+ +S       N    +R  + L   Y        SS+
Sbjct: 129 FIKIKARGLLLEGLFTHHRSADELTSEWFWQKKNFEDAKRIAKELAIKYGFAPLRFHSSN 188

Query: 201 GILLGPNYHFQ--LTRPGISLYGGTDKINKSHP--MQTVVTAEARIILIRKALAGELVSY 256
              L  N  F   + R GI+ YG        H    + V++  A+ +  RK  + + V Y
Sbjct: 189 SAALFRNASFDEDMARVGIAAYGCMTLPKPLHVDGFKPVLSLWAKKLSSRKLKSHQRVGY 248

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           GG  ++  D +++    GY +G+              + +   G+     + ++G+I+MD
Sbjct: 249 GGDGEILSDGVVSNYDFGYGEGF--------------LRVCANGYKTPEGIELIGRISMD 294

Query: 317 MTMF 320
            + F
Sbjct: 295 NSSF 298


>gi|313902556|ref|ZP_07835956.1| alanine racemase [Thermaerobacter subterraneus DSM 13965]
 gi|313467122|gb|EFR62636.1| alanine racemase [Thermaerobacter subterraneus DSM 13965]
          Length = 511

 Score = 39.7 bits (91), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 110/282 (39%), Gaps = 15/282 (5%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+++DL  L  N  ++   L    R  AVVK + YG+G E  A     AG       ++E
Sbjct: 52  RIEVDLDVLAANLAAVRRFLRPGTRLLAVVKGDGYGVGAEMAARTFAAAGADALGTATLE 111

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYA 125
             ++LR     A I V     P          L   +     L     + ++ GV  P A
Sbjct: 112 SALRLRRSGITAPILVFQPPEPPLLDFWLREGLQATVHDAATLHALSQRAVALGVGRPLA 171

Query: 126 --LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+VD G  R GL+  +       + +    ++  + +HL  A  P   +  +      
Sbjct: 172 VHLEVDMGLGRGGLAPGQVAPLVAGAASLPGVRIEGLYTHLPTAARPRLALRLLDRFLRL 231

Query: 184 TLISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
                 +G+   L   A S  ++L P     + R G  LYG   +  +       V   +
Sbjct: 232 VRDLEERGLRPPLVHCAESHLLVLAPYAQLDMVRVGNLLYGYAPRAARR--AGLAVRPPS 289

Query: 241 RIILIRKAL--AGELVS--YGGQKKLTRDSLIAVAAIGYADG 278
           R+++   A+  AG++     GG  +    + +AV  +G ADG
Sbjct: 290 RLVVRVWAVHRAGDMTPGYRGGWAR--PGTPVAVLPVGLADG 329


>gi|118162122|gb|ABK64234.1| Dal [Listeria monocytogenes]
 gi|118162144|gb|ABK64245.1| Dal [Listeria monocytogenes]
 gi|118162158|gb|ABK64252.1| Dal [Listeria monocytogenes]
 gi|118162162|gb|ABK64254.1| Dal [Listeria monocytogenes]
 gi|118162182|gb|ABK64264.1| Dal [Listeria monocytogenes]
 gi|118162184|gb|ABK64265.1| Dal [Listeria monocytogenes]
          Length = 146

 Score = 39.3 bits (90), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTR 214
           +++  K        A+S+  LL P   F   R
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIR 145


>gi|313619775|gb|EFR91379.1| alanine racemase [Listeria innocua FSL S4-378]
          Length = 161

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 9   LKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ID  A++ N  +  N L       AVVK NAYG G  + A     AG + F V  ++E
Sbjct: 11  IEIDRAAIRENIKNEQNKLPDKVALWAVVKANAYGHGIIETAKIAKEAGAKGFCVAILDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI----SSVPQLTFYSKLMSCGVSHP 123
            + LR    +    ++ G    ++  +   N I V       +  LT  + L        
Sbjct: 71  ALALREAGFRNESILVLGATRKEDANLAAKNNISVTVFREDWLDDLTLEAPLR------- 123

Query: 124 YALQVDTGFNRLGLSLQE 141
             L+VD+G  RLG+  +E
Sbjct: 124 IHLKVDSGMGRLGIRSRE 141


>gi|289828986|ref|ZP_06546686.1| D-amino acid dehydrogenase-Alanine racemase fusion protein
          [Salmonella enterica subsp. enterica serovar Typhi str.
          E98-3139]
          Length = 71

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 7  LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
          ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL       F + ++E
Sbjct: 5  IQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL--GATDGFAMLNLE 62

Query: 67 EGVKLR 72
          E + LR
Sbjct: 63 EAITLR 68


>gi|118162134|gb|ABK64240.1| Dal [Listeria monocytogenes]
 gi|118162136|gb|ABK64241.1| Dal [Listeria monocytogenes]
 gi|118162150|gb|ABK64248.1| Dal [Listeria monocytogenes]
 gi|118162156|gb|ABK64251.1| Dal [Listeria monocytogenes]
 gi|118162160|gb|ABK64253.1| Dal [Listeria monocytogenes]
 gi|118162164|gb|ABK64255.1| Dal [Listeria monocytogenes]
 gi|118162168|gb|ABK64257.1| Dal [Listeria monocytogenes]
 gi|118162170|gb|ABK64258.1| Dal [Listeria monocytogenes]
 gi|118162174|gb|ABK64260.1| Dal [Listeria monocytogenes]
 gi|118162180|gb|ABK64263.1| Dal [Listeria monocytogenes]
          Length = 146

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKG--IEASLASSSGILLGPNYHFQLTR 214
           +++  K        A+S+  LL P   F   R
Sbjct: 114 ILTSLKKRPTYVHTANSAASLLQPQIGFDAIR 145


>gi|19703826|ref|NP_603388.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713976|gb|AAL94687.1| Alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 359

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 137/322 (42%), Gaps = 48/322 (14%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA------RIFVLYGIHP 88
           V+K NAYG     IA ALY+  ++ +      E + +  Y          +I V   +  
Sbjct: 32  VIKANAYGHNYLLIAKALYDFNIKTWAAARFSEAITITEYMMNNFSINDFKILVFESLDD 91

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
               +     + P I+S+  L   + L +       +L++D GF R G+  +E +D   N
Sbjct: 92  DYSFLEKYPQICPTINSIKDLK--NALANNIPIDRLSLKIDFGFGRNGIKTEE-VDELKN 148

Query: 149 --SFN--KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSS 200
              FN  K LG    I SHL      S++ + +++ R  T + +  G +      L +++
Sbjct: 149 LIKFNSLKFLG----IFSHLFS----STYTDGLEVIRKFTEVVNKLGKDNFEMVHLQNAA 200

Query: 201 GILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAE-ARIILIRKALAGELVSY 256
           GI    NY+ ++    R G+  YG  +     H ++ V T     +  +R     + V+Y
Sbjct: 201 GIY---NYNVEVVTHIRTGMLTYGLQEAGFYDHDLKPVFTGLIGYVDSVRYVNELDYVAY 257

Query: 257 GGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
                ++ +   IA   IGY DG+P       + +  +  +  K +       ++ ++TM
Sbjct: 258 EDLTSISPKTKKIAKIKIGYGDGFP------KANNKTTCLIKKKEY-------VISQVTM 304

Query: 316 DMTMFDITDSLSIEVGDYIQIF 337
           D T  ++ D   + VGD + ++
Sbjct: 305 DNTFIEVDD--RVNVGDKVHLY 324


>gi|237741523|ref|ZP_04572004.1| alanine racemase [Fusobacterium sp. 4_1_13]
 gi|229429171|gb|EEO39383.1| alanine racemase [Fusobacterium sp. 4_1_13]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 137/322 (42%), Gaps = 48/322 (14%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA------RIFVLYGIHP 88
           V+K NAYG     IA ALY+  ++ +      E + +  Y          +I V   +  
Sbjct: 32  VIKANAYGHNYLLIAKALYDFNIKTWATARFSEAITITEYMINNFSINDFKILVFESLDD 91

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
               +     + P I+S+  L   + L +       +L++D GF R G+  +E +D   N
Sbjct: 92  DYSFLEKYPQICPTINSIKDLK--NALANNIPIDRLSLKIDFGFGRNGIKAEE-VDELKN 148

Query: 149 --SFN--KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA----SLASSS 200
              FN  K LG    I SHL  A    ++ + +++ R  T + +  G +      L +++
Sbjct: 149 LIKFNSLKFLG----IFSHLFSA----TYTDGLEVIRKFTEVVNKLGKDNFEMIHLQNAA 200

Query: 201 GILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAE-ARIILIRKALAGELVSY 256
           GI    NY+ ++    R G+  YG  +     H ++ V T     ++ +R     + V+Y
Sbjct: 201 GIY---NYNVEVVTHIRTGMLTYGLQEAGFYDHDLKPVFTGLIGYVVSVRYVNELDYVAY 257

Query: 257 GGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
                +  +   IA   IGY DG+      L + +  +  +  K +       ++ ++TM
Sbjct: 258 EDLSSINPKTKKIAKIKIGYGDGF------LKANNKTTCLIKKKEY-------VISQVTM 304

Query: 316 DMTMFDITDSLSIEVGDYIQIF 337
           D T  ++ D   + VGD + ++
Sbjct: 305 DNTFIEVDD--RVNVGDKVHLY 324


>gi|328868084|gb|EGG16464.1| Putative synthase [Dictyostelium fasciculatum]
          Length = 444

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 259 QKKLTRDSLIAVAAIGY-ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
           QK L +D L++V  + Y ++G  L L   D E S  + L   GF K Y V I GK+T DM
Sbjct: 241 QKMLNKDHLMSVGRLDYYSEG--LILITNDGELSRYLELPQSGFEKTYRVRIFGKVTPDM 298

Query: 318 TMFDITDSLSIE 329
            M  +T  L+I+
Sbjct: 299 NMA-LTRGLTID 309


>gi|256844858|ref|ZP_05550316.1| alanine racemase [Fusobacterium sp. 3_1_36A2]
 gi|256718417|gb|EEU31972.1| alanine racemase [Fusobacterium sp. 3_1_36A2]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 137/322 (42%), Gaps = 48/322 (14%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA------RIFVLYGIHP 88
           V+K NAYG     IA ALY+  ++ +      E + +  Y          +I V   +  
Sbjct: 32  VIKANAYGHNYLLIAKALYDFNIKTWATARFSEAITITEYMINNFSINDFKILVFESLDD 91

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
               +     + P I+S+  L   + L +       +L++D GF R G+  +E +D   N
Sbjct: 92  DYSFLEKYPQICPTINSIKDLK--NALANNIPIDRLSLKIDFGFGRNGIKAEE-VDELKN 148

Query: 149 --SFN--KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA----SLASSS 200
              FN  K LG    I SHL  A    ++ + +++ R  T + +  G +      L +++
Sbjct: 149 LIKFNSLKFLG----IFSHLFSA----TYTDGLEVIRKFTEVVNKLGKDNFEMIHLQNAA 200

Query: 201 GILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAE-ARIILIRKALAGELVSY 256
           GI    NY+ ++    R G+  YG  +     H ++ V T     ++ +R     + V+Y
Sbjct: 201 GIY---NYNVEVVTHIRTGMLTYGLQEAGFYDHDLKPVFTGLIGYVVSVRYVNELDYVAY 257

Query: 257 GGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
                +  +   IA   IGY DG+      L + +  +  +  K +       ++ ++TM
Sbjct: 258 EDLSSINPKTKKIAKIKIGYGDGF------LKANNKTTCLIKKKEY-------VISQVTM 304

Query: 316 DMTMFDITDSLSIEVGDYIQIF 337
           D T  ++ D   + VGD + ++
Sbjct: 305 DNTFIEVDD--RVNVGDKVHLY 324


>gi|242241683|ref|ZP_04796128.1| conserved hypothetical protein [Staphylococcus epidermidis
          W23144]
 gi|242234865|gb|EES37176.1| conserved hypothetical protein [Staphylococcus epidermidis
          W23144]
          Length = 80

 Score = 38.5 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 29 NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
          +AR  +VVK NAYG G E+I  A+       F + ++EE + LR    +  I +L G   
Sbjct: 6  HARVWSVVKANAYGHGIERIWSAI--GATDGFALLNLEEAITLRERGWKGPILMLEGFFH 63

Query: 89 GQEKIIFD 96
           Q+  I+D
Sbjct: 64 AQDLEIYD 71


>gi|261885821|ref|ZP_06009860.1| alanine racemase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 154

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 30/170 (17%)

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
           +S+ I     +  +  R GI  +G + + ++S  ++ V++  A  I  R   AG+ V YG
Sbjct: 6   NSAAIERTNGFDDEFVRAGIVQFGYS-QFDESLNLKKVLSLWADRISKRVLKAGQSVCYG 64

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
           G     +D  IA   + Y DG  L  +G    H  +   G K         ILGK++MD 
Sbjct: 65  GAFTAKKDINIATYDLRYGDGL-LRYNGKGDLHLAN---GEK---------ILGKMSMD- 110

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS---GTTNYDLLVRIGTR 364
             F   DS     GD I +F      DD  + +    T +YD+LV++ ++
Sbjct: 111 -SFSCADS-----GDQICVF------DDARVWAKFFDTRSYDILVKLSSK 148


>gi|28493462|ref|NP_787623.1| alanine racemase-like protein [Tropheryma whipplei str. Twist]
 gi|28476503|gb|AAO44592.1| alanine racemase-like protein [Tropheryma whipplei str. Twist]
          Length = 224

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+ ++  +K  AG  VSY    +   +  +A+  IGYADG P    G       SV    
Sbjct: 107 ESCVVTCKKLPAGAGVSYCHTYRTQSEENVALIGIGYADGLPFQAQG-------SV---- 155

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
              IK    PI+G+I MD  +  +T   S + G  + ++G
Sbjct: 156 --EIKKRKYPIIGRIAMDYMVAKVTPD-SYKHGTRVTVWG 192


>gi|28572426|ref|NP_789206.1| alanine racemase II [Tropheryma whipplei TW08/27]
 gi|28410557|emb|CAD66943.1| alanine racemase II [Tropheryma whipplei TW08/27]
          Length = 220

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+ ++  +K  AG  VSY    +   +  +A+  IGYADG P    G       SV    
Sbjct: 103 ESCVVTCKKLPAGAGVSYCHTYRTQSEENVALIGIGYADGLPFQAQG-------SV---- 151

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
              IK    PI+G+I MD  +  +T   S + G  + ++G
Sbjct: 152 --EIKKRKYPIIGRIAMDYMVAKVTPD-SYKHGTRVTVWG 188


>gi|213416540|ref|ZP_03349684.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 68

 Score = 38.1 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ +
Sbjct: 5   LGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFRR 61


>gi|296328819|ref|ZP_06871332.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154050|gb|EFG94855.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 359

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 137/322 (42%), Gaps = 48/322 (14%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA------RIFVLYGIHP 88
           V+K NAYG     IA ALY+  ++ +      E + +  Y          +I V   +  
Sbjct: 32  VIKANAYGHNYLLIAKALYDFNIKTWAAARFSEAITITEYMMNNFSINDFKILVFESLDD 91

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
               +     + P I+S+  L   + L +       +L++D GF R G+  +E +D   N
Sbjct: 92  YYSFLEKYPQICPTINSIKDLK--NALANNIPIDRLSLKIDFGFGRNGIKAEE-VDELKN 148

Query: 149 --SFN--KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSS 200
              FN  K LG    I SHL      S++ + +++ R  T + +  G +      L +++
Sbjct: 149 LIKFNSLKFLG----IFSHLFS----STYTDGLEVIRKFTEVVNKLGKDNFEMVHLQNAA 200

Query: 201 GILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAE-ARIILIRKALAGELVSY 256
           GI    NY+ ++    R G+  YG  +     H ++ V T     +  +R     + V+Y
Sbjct: 201 GIY---NYNVEVVTHIRTGMLTYGLQEAGFYDHDLKPVFTGLIGYVDSVRYVNELDYVAY 257

Query: 257 GGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
                ++ +   IA   IGY DG+P       + +  +  +  K +       ++ ++TM
Sbjct: 258 EDLTSISPKTKKIAKIKIGYGDGFP------KANNKTTCLIKKKEY-------VISQVTM 304

Query: 316 DMTMFDITDSLSIEVGDYIQIF 337
           D T  ++ D   + VGD + ++
Sbjct: 305 DNTFIEVDD--RVNVGDKVHLY 324


>gi|257464238|ref|ZP_05628617.1| alanine racemase [Fusobacterium sp. D12]
 gi|317061757|ref|ZP_07926242.1| alanine racemase [Fusobacterium sp. D12]
 gi|313687433|gb|EFS24268.1| alanine racemase [Fusobacterium sp. D12]
          Length = 360

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 135/324 (41%), Gaps = 51/324 (15%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           V+K NAYG G  ++A     AG+    V   EE    R     +    L    P Q  ++
Sbjct: 33  VIKANAYGHGAVEMAKTCLQAGITQVAVARYEEA---RHILEDSYFQRLSETVPFQ-ILV 88

Query: 95  FDT-NLIPVISSVPQLTF-------YSKLMSCGVS-HPYALQVDTGFNRLGLSLQEALDF 145
           F+T     VI + P++           + +  G+S     +++D  F R G+   E  DF
Sbjct: 89  FETMGDDSVIKAFPRIDMAINSLEDLKEALEHGISPKRMHVKIDLSFGRNGI---EEKDF 145

Query: 146 TH--NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-----HYKGIEASLAS 198
            +      +K   L  I SHL  +   S     + +E F TL+S     H++ I    ++
Sbjct: 146 KYLIREIQEKNIFLKGIFSHLFAS---SYEDGLLCIELFSTLLSQIGREHFERIHLQNSA 202

Query: 199 SSGILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVS 255
           S+      NY   +    R G+  YG  +       +Q   + + R+  IR     + ++
Sbjct: 203 SA-----YNYDCDIVTDIRVGMLNYGLQEPGYFHEDLQQAFSLKGRVDSIRAGKDMKYLA 257

Query: 256 YGGQKKL--TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           Y  +++L       IA   IGYADG+     G  +E++  +        K Y +    +I
Sbjct: 258 YERKEELGVEEAKWIAKIKIGYADGF-----GKQNENTNCLI-----HRKEYRIV---EI 304

Query: 314 TMDMTMFDITDSLSIEVGDYIQIF 337
           TMD +  ++ +   ++VGD + +F
Sbjct: 305 TMDNSFLEVDE--RVKVGDEVILF 326


>gi|254304083|ref|ZP_04971441.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324275|gb|EDK89525.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 359

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 138/323 (42%), Gaps = 50/323 (15%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT------PQARIFVLYGIHP 88
           V+K NAYG     IA ALY+  ++ + V    E + +  Y          +I V   +  
Sbjct: 32  VIKANAYGHNSLLIAKALYDFNIKTWAVARFSEAITIIEYMMDNFSINDFKILVFESLGD 91

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYALQVDTGFNRLGLSLQEALDFTH 147
               +     + P I+S+  L      ++  +S    +L++D GF R G+  +E +D   
Sbjct: 92  DYSFLEKYPEICPTINSIKDL---KNALANNISIDRLSLKIDFGFGRNGIKAEE-VDELK 147

Query: 148 N--SFN--KKLGQLSLIISHLACADDPSSHVNSVQ-LERFRTLISHY--KGIE-ASLASS 199
           N   FN  K LG    I SHL  A    ++ + ++ +++F  ++S       E   L ++
Sbjct: 148 NLIKFNSLKFLG----IFSHLFSA----TYTDGLEVIKKFTEVVSKLGRDNFEMVHLQNA 199

Query: 200 SGILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAEARII-LIRKALAGELVS 255
           +GI    NY   +    R G+  YG  +     H ++ V T     +  +R     + V+
Sbjct: 200 AGIY---NYDVDVVTHIRTGMLTYGLQEAGFYDHDLKPVFTGLIGFVDSVRYVSELDYVA 256

Query: 256 YGGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
           Y     ++ +   IA   IGY DG+P       + +  +  +  K +       ++ ++T
Sbjct: 257 YEDLSSISPKTKKIAKIKIGYGDGFP------KANNKTTCLIKKKEY-------VISQVT 303

Query: 315 MDMTMFDITDSLSIEVGDYIQIF 337
           MD T  ++ D   + VGD + ++
Sbjct: 304 MDNTFIEVDD--RVNVGDKVHLY 324


>gi|294785861|ref|ZP_06751149.1| alanine racemase [Fusobacterium sp. 3_1_27]
 gi|294487575|gb|EFG34937.1| alanine racemase [Fusobacterium sp. 3_1_27]
          Length = 359

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 137/322 (42%), Gaps = 48/322 (14%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA------RIFVLYGIHP 88
           V+K NAYG     IA ALY+  ++ +      E + +  Y          +I V   +  
Sbjct: 32  VIKANAYGHNYLLIAKALYDFNIKTWATARFSEAITITEYMINNFSINDFKILVFESLDD 91

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
               +     + P I+S+  L   + L +       +L++D GF R G+  +E +D   N
Sbjct: 92  DYSFLEKYPQICPTINSIKDLK--NALANNIPIDRLSLKIDFGFGRNGIKAEE-VDELKN 148

Query: 149 --SFN--KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA----SLASSS 200
              FN  K LG    I SHL  A    ++ + +++ R  T + +  G +      L +++
Sbjct: 149 LIKFNSLKFLG----IFSHLFSA----TYTDGLEVIRKFTGVVNKLGKDNFEMIHLQNAA 200

Query: 201 GILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAE-ARIILIRKALAGELVSY 256
           GI    NY+ ++    R G+  YG  +     H ++ V T     ++ +R     + V+Y
Sbjct: 201 GIY---NYNVEVVTHIRTGMLTYGLQEAGFYDHDLKPVFTGLIGYVVSVRYVNELDYVAY 257

Query: 257 GGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
                +  +   IA   IGY DG+      L + +  +  +  K +       ++ ++TM
Sbjct: 258 EDLSSINPKTKKIAKIKIGYGDGF------LKANNKTTCLIKKKEY-------VISQVTM 304

Query: 316 DMTMFDITDSLSIEVGDYIQIF 337
           D T  ++ D   + VGD + ++
Sbjct: 305 DNTFIEVDD--RVNVGDKVHLY 324


>gi|46206246|ref|ZP_00210259.1| COG0787: Alanine racemase [Magnetospirillum magnetotacticum MS-1]
          Length = 80

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEAS-------LASSSGILLGPNYHFQLTR 214
           SHLA AD+P       Q + F   +   K   A        LA+S+  L  P  H+ L R
Sbjct: 8   SHLAFADEPGHPTVIAQADVFDEAVR--KAARAGVVPELRHLANSAATLTAPRTHYDLVR 65

Query: 215 PGISLYGGT 223
           PG++ YG T
Sbjct: 66  PGLAAYGMT 74


>gi|262066393|ref|ZP_06026005.1| alanine racemase [Fusobacterium periodonticum ATCC 33693]
 gi|291379960|gb|EFE87478.1| alanine racemase [Fusobacterium periodonticum ATCC 33693]
          Length = 358

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 149/351 (42%), Gaps = 60/351 (17%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY-----TPQARIFVLYGIHPG 89
           V+K NAYG     IA ALY+  ++ + V    E V +  Y         +I +   +   
Sbjct: 32  VLKANAYGHNILLIAKALYDYDIKVWAVARYSEAVSICEYFKTLSIDDFKILIFESLIDD 91

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYALQVDTGFNRLGLSLQEALDFTHN 148
              +   + + P ++S+  L      ++  VS    +L++D GF R G+  +E +D   N
Sbjct: 92  YSVLEKYSQICPTLNSIKDL---KNALANNVSIDRLSLKIDFGFGRNGIKYEE-IDELKN 147

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQ-LERFRTLI-----SHYKGIEASLASSSGI 202
                  +   I SHL  A    S+ + ++ +++F  L+     ++++ I   L +++GI
Sbjct: 148 LIKYNSLKFLSIFSHLFSA----SYTDGLEVIKKFTDLVNKLGKNNFEMIH--LQNAAGI 201

Query: 203 LLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAE-ARIILIRKALAGELVSYG- 257
               NY  ++    R G+  YG  +       ++ V T     +  +R     + V+Y  
Sbjct: 202 Y---NYDVEIVTHIRTGMLTYGLQEAGFYDLDLKPVFTGLIGYVDSVRYVNELDYVAYQE 258

Query: 258 ------GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
                 G KK      IA   IGY DG+        + +  +  +  K +       ++ 
Sbjct: 259 LSSIDPGTKK------IAKIKIGYGDGFS------KANNKTTCLIKKKEY-------VIS 299

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           ++TMD T  ++ D   + VGD + ++    + +++   +G +  +LL+ I 
Sbjct: 300 QVTMDNTFIEVDD--RVNVGDEVHLYH---RPNEIKTKTGFSMLELLIAIS 345


>gi|260494827|ref|ZP_05814957.1| alanine racemase [Fusobacterium sp. 3_1_33]
 gi|260197989|gb|EEW95506.1| alanine racemase [Fusobacterium sp. 3_1_33]
          Length = 359

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 149/345 (43%), Gaps = 47/345 (13%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA------RIFVLYGIHP 88
           V+K NAYG     IA ALY+  ++ + V    E + +  Y          +I V   ++ 
Sbjct: 32  VIKANAYGHNSLLIAKALYDFNLKTWAVARFSEAISITEYMMNNFSINDFKILVFESLND 91

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
               +   + + P I+S+  L   + L +       +L++D GF R G+  +E +D   N
Sbjct: 92  DYSFLEKYSQICPTINSIKDLK--NALANNIPIDRLSLKIDFGFGRNGVK-EEEVDELKN 148

Query: 149 --SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSSGI 202
              FN  L  LS I SHL  A    S+ + +++ R  T + +  G        L +++GI
Sbjct: 149 LIKFN-SLKFLS-IFSHLFSA----SYTDGLEVIRKFTEVVNKLGRNNFQMIHLQNAAGI 202

Query: 203 LLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAE-ARIILIRKALAGELVSYGG 258
               NY  ++    R G+  YG  +       ++ V T     +  +R     + V+Y  
Sbjct: 203 Y---NYDVEVVTHIRTGMLTYGLQEAGFYDLDLKPVFTGLIGYVDSVRYVNELDYVAYED 259

Query: 259 QKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
              ++ +   IA   IGY DG+      L + +  +  +  K +       I+ ++TMD 
Sbjct: 260 LSSISPKTKKIAKIKIGYGDGF------LKANNKTTCLIKKKEY-------IISQVTMDN 306

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           T  ++ D   + VGD + ++    + +++ L +G +  + L+ I 
Sbjct: 307 TFIEVDD--RVNVGDKVHLYH---RPNEMKLRTGISMLEFLIAIS 346


>gi|294783099|ref|ZP_06748423.1| alanine racemase [Fusobacterium sp. 1_1_41FAA]
 gi|294479977|gb|EFG27754.1| alanine racemase [Fusobacterium sp. 1_1_41FAA]
          Length = 358

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 74/358 (20%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY-----TPQARIFVLYGIHPG 89
           V+K NAYG     IA ALY+  ++ + V    E V +  Y         +I +       
Sbjct: 32  VIKANAYGHDILLIAKALYDYDIKVWAVARYSEAVSICEYFKTLSIDDFKILIF------ 85

Query: 90  QEKIIFDTNLI-------PVISSVPQLTFYSKLMSCGVS-HPYALQVDTGFNRLGLSLQE 141
            E +I D +L+       P ++S+  L      ++  +S    +L++D GF R G+  +E
Sbjct: 86  -ESLIDDYSLLEKYPQICPTLNSIKDL---KNALANNISIDRLSLKIDFGFGRNGIKYEE 141

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-LERFRTLI-----SHYKGIEAS 195
             +  +      L  LS I SHL  A    S+ + ++ +++F  L+     ++++ I   
Sbjct: 142 VDELKNLIKYNSLKFLS-IFSHLFSA----SYTDGLEVIKKFTDLVNKLGRNNFEMIH-- 194

Query: 196 LASSSGILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAE-ARIILIRKALAG 251
           L +++GI    NY   +    R G+  YG  +       M+ V T     +  +R     
Sbjct: 195 LQNAAGIY---NYDVDIVTHIRTGMLTYGLQEAGFYDLDMKPVFTGLIGYVDSVRYVNEL 251

Query: 252 ELVSYG-------GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           + V+Y        G KK      IA   IGY DG+        + +  +  +  K +   
Sbjct: 252 DYVAYQELSSIDLGTKK------IAKIKIGYGDGFS------KANNKTTCLIKKKEY--- 296

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
               ++ ++TMD T  ++ D   + VGD + ++    + +++   +G +  +LL+ I 
Sbjct: 297 ----VISQVTMDNTFIEVDD--RVNVGDEVHLYH---RPNEIKTKTGFSMLELLIAIS 345


>gi|309806954|ref|ZP_07700936.1| alanine racemase, N-terminal domain protein [Lactobacillus iners
          LactinV 03V1-b]
 gi|308166574|gb|EFO68771.1| alanine racemase, N-terminal domain protein [Lactobacillus iners
          LactinV 03V1-b]
          Length = 123

 Score = 37.4 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 8  RLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
          ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V  ++
Sbjct: 10 KILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCVAILD 69

Query: 67 EGVKLRLYTPQARIFVL 83
          E ++LR    +  I VL
Sbjct: 70 EAIELRKAGIKVPILVL 86


>gi|281424708|ref|ZP_06255621.1| mannosyltransferase [Prevotella oris F0302]
 gi|281401078|gb|EFB31909.1| mannosyltransferase [Prevotella oris F0302]
          Length = 375

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 22/137 (16%)

Query: 229 SHPMQTVVTAEAR--IILIRKALAG-----ELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
            H +  V T E R  I+L  +AL+       LV  G Q K  +    AV A+G AD    
Sbjct: 205 QHYILNVGTVERRKNILLGIRALSQLPPTLHLVVVGRQTKYQKQLDAAVHALGLADRVHF 264

Query: 282 TLSGLDSEHSPSVFLGGKGFI-----KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
            L G+ ++H P+++   + FI     +G+ +PI+  I   + +   T S   E G     
Sbjct: 265 -LQGVSNDHLPAIYRQAEAFIYPSRYEGFGIPIIEAIQSGLPVVAATGSCLEEAG----- 318

Query: 337 FGPD---IKLDDVALAS 350
            GPD   +  DDV  A+
Sbjct: 319 -GPDCLYVGPDDVRRAA 334


>gi|323359912|ref|YP_004226308.1| alanine racemase [Microbacterium testaceum StLB037]
 gi|323276283|dbj|BAJ76428.1| alanine racemase [Microbacterium testaceum StLB037]
          Length = 211

 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 21/155 (13%)

Query: 217 ISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           ++L+G    +  SH +  V++   R +  +  L GE VSYG   +   D+ +A+   GYA
Sbjct: 70  VTLFG----LPGSHALP-VLSLRGRALGTKALLRGEGVSYGYTHRAPHDTRVALVTGGYA 124

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
            G   +L      ++ +V + G+         I+G++ MD+ + D+ D+  I  G  +  
Sbjct: 125 QGVVRSLG-----NAVTVAIDGRRH------RIVGRVAMDVCVVDVGDA-DIARGAEVVF 172

Query: 337 FGPDIK----LDDVALASGTTNYDLLVRIGTRYAK 367
           FG   +    L++   A+G +  +++  +G R  +
Sbjct: 173 FGDPAEGHPSLEEWTDATGWSAAEIVAAVGVRAER 207


>gi|256026743|ref|ZP_05440577.1| alanine racemase [Fusobacterium sp. D11]
 gi|289764740|ref|ZP_06524118.1| alanine racemase [Fusobacterium sp. D11]
 gi|289716295|gb|EFD80307.1| alanine racemase [Fusobacterium sp. D11]
          Length = 359

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 148/345 (42%), Gaps = 47/345 (13%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA------RIFVLYGIHP 88
           V+K NAYG     IA ALY+  ++ + V    E + +  Y          +I V   ++ 
Sbjct: 32  VIKANAYGHNSLLIAKALYDFNLKTWAVARFSEAISITEYMMNNFSINDFKILVFESLND 91

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
               +     + P I+S+  L   + L +       +L++D GF R G+  +E +D   N
Sbjct: 92  DYSFLEKYPQICPTINSIKDLK--NALANNIPIDRLSLKIDFGFGRNGVK-EEEVDELKN 148

Query: 149 --SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSSGI 202
              FN  L  LS I SHL  A    S+ + +++ R  T + +  G        L +++GI
Sbjct: 149 LIKFN-SLKFLS-IFSHLFSA----SYTDGLEVIRKFTEVVNKLGRNNFQMIHLQNAAGI 202

Query: 203 LLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTVVTAE-ARIILIRKALAGELVSYGG 258
               NY  ++    R G+  YG  +       ++ V T     +  +R     + V+Y  
Sbjct: 203 Y---NYDVEVVTHIRTGMLTYGLQEAGFYDLDLKPVFTGLIGYVDSVRYVNELDYVAYED 259

Query: 259 QKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
              ++ +   IA   IGY DG+      L + +  +  +  K +       I+ ++TMD 
Sbjct: 260 LSSISPKTKKIAKIKIGYGDGF------LKANNKTTCLIKKKEY-------IISQVTMDN 306

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           T  ++ D   + VGD + ++    + +++ L +G +  + L+ I 
Sbjct: 307 TFIEVDD--RVNVGDKVHLYH---RPNEMKLRTGISMLEFLIAIS 346


>gi|118162172|gb|ABK64259.1| Dal [Listeria monocytogenes]
          Length = 146

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTR 214
           +++  K     +  A+S+  LL P   F   R
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIR 145


>gi|118162176|gb|ABK64261.1| Dal [Listeria monocytogenes]
 gi|118162178|gb|ABK64262.1| Dal [Listeria monocytogenes]
          Length = 146

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 126 LQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T
Sbjct: 54  LKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQT 113

Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTR 214
           +++  K     +  A+S+  LL P   F   R
Sbjct: 114 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIR 145


>gi|255024620|ref|ZP_05296606.1| hypothetical protein LmonocyFSL_16286 [Listeria monocytogenes FSL
          J1-208]
          Length = 118

 Score = 36.6 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 9  LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
          ++ID  A++ N  +    L  N    AVVK NAYG G  ++A     AG + F V  ++E
Sbjct: 11 IEIDRAAIRENIKNEQRKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDE 70

Query: 68 GVKLR 72
           + LR
Sbjct: 71 ALALR 75


>gi|254469099|ref|ZP_05082504.1| ABC transporter, ATP-binding protein NosF [Pseudovibrio sp. JE062]
 gi|211960934|gb|EEA96129.1| ABC transporter, ATP-binding protein NosF [Pseudovibrio sp. JE062]
          Length = 306

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 28/184 (15%)

Query: 35  VVKDNAYGLG-CEKIAPALYN-AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
            VKD ++ LG  E++A   +N AG   FF  S      L   TP A    + G  PG +K
Sbjct: 20  AVKDLSFELGGAERVALLGHNGAGKTTFFKMS------LGFLTPSAGRIEVLGAEPGSDK 73

Query: 93  IIFDTNLIP-------VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
               T  +P        ++ V  L +Y+KL          L       R+GL+  EA   
Sbjct: 74  ARSSTAFLPESVAFQRTLTGVEVLKYYAKLKGEDPKKAVGL-----LERVGLA--EAGTR 126

Query: 146 THNSFNK----KLGQLSLIIS--HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS 199
              +++K    +LG    +I    L   D+P+S ++ +  + F  L++   G  A++  S
Sbjct: 127 RVGTYSKGMRQRLGLAQALIGTPKLVLLDEPTSGLDPISRQNFYDLVTEISGNGATVLLS 186

Query: 200 SGIL 203
           S  L
Sbjct: 187 SHAL 190


>gi|237745050|ref|ZP_04575531.1| alanine racemase [Fusobacterium sp. 7_1]
 gi|229432279|gb|EEO42491.1| alanine racemase [Fusobacterium sp. 7_1]
          Length = 359

 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 148/345 (42%), Gaps = 47/345 (13%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA------RIFVLYGIHP 88
           V+K NAYG     IA ALY+  ++ + V    E + +  Y          +I V   ++ 
Sbjct: 32  VIKANAYGHNSLLIAKALYDFNLKTWAVARFSEAISITEYMMNNFSINDFKILVFESLND 91

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
               +     + P I+S+  L   + L +       +L++D GF R G+  +E +D   N
Sbjct: 92  DYSFLEKYPQICPTINSIKDLK--NALANNIPIDRLSLKIDFGFGRNGVK-EEEVDELKN 148

Query: 149 --SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSSGI 202
              FN  L  LS I SHL  A    S+ + +++ R  T + +  G        L +++GI
Sbjct: 149 LIKFN-SLKFLS-IFSHLFSA----SYTDGLEVIRKFTEVVNKLGRNNFQMIHLQNAAGI 202

Query: 203 LLGPNYHFQL---TRPGISLYGGTDKINKSHPMQTVVTAE-ARIILIRKALAGELVSYGG 258
               NY  ++    R G+  YG  +       ++ V T     +  +R     + V+Y  
Sbjct: 203 Y---NYDVEVVTHVRTGMLTYGLQEAGFYDLDLKPVFTGLIGYVDSVRYVNELDYVAYED 259

Query: 259 QKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
              ++ +   IA   IGY DG+      L + +  +  +  K +       ++ ++TMD 
Sbjct: 260 LSSISPKTKKIAKIKIGYGDGF------LKANNKTTCLIKKKEY-------VISQVTMDN 306

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           T  ++ D   + VGD + ++    + +++ L +G +  + L+ I 
Sbjct: 307 TFIEVDD--RVNVGDKVHLYH---RPNEMKLRTGISMLEFLIAIS 346


Searching..................................................done


Results from round 2




>gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040010|gb|ACT56806.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 370

 Score =  504 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 370/370 (100%), Positives = 370/370 (100%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF
Sbjct: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV
Sbjct: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE
Sbjct: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA
Sbjct: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG
Sbjct: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR
Sbjct: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360

Query: 361 IGTRYAKFYT 370
           IGTRYAKFYT
Sbjct: 361 IGTRYAKFYT 370


>gi|220931017|ref|YP_002507925.1| alanine racemase [Halothermothrix orenii H 168]
 gi|254802366|sp|B8D0W1|ALR_HALOH RecName: Full=Alanine racemase
 gi|219992327|gb|ACL68930.1| alanine racemase [Halothermothrix orenii H 168]
          Length = 379

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 106/384 (27%), Positives = 181/384 (47%), Gaps = 26/384 (6%)

Query: 1   MHSN--EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M+         +IDL+ L+ N++ +  + G N +  +VVK +AYG G   +A  L  AG 
Sbjct: 1   MNKRITRPTWAEIDLSCLQFNFNQVKEILGSNVKIMSVVKADAYGHGVIPVAKTLVEAGT 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           Q   V   EEGV+LR       I VL  + P Q +++F  +LIP +         ++L +
Sbjct: 61  QRLAVAIPEEGVELREAGLSVPIQVLGEVLPSQYELLFKYDLIPTVGREETALSLNRLAA 120

Query: 118 C-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              V     ++VDTG  R+G+  +EA+ F     +    ++  +++H A AD+       
Sbjct: 121 KYNVVKKVHIKVDTGMGRIGVRPREAVGFVKKVNSLSNIKIEGLMTHFASADERDKSYTY 180

Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KS 229
            Q ++F+ ++     +         ++S+ I+    +   + RPGI LYG     +   +
Sbjct: 181 EQWDKFKQVLDGLNKLRIDIPIKHSSNSAAIIDFKKFGLDMVRPGIMLYGLKPSRDLINN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T + RI+ +++   G  +SYG      R S IA   +GYADGYP  LS     
Sbjct: 241 IDLKPVLTWKTRIVYLKEVPPGTGISYGTTYVTNRKSKIATLPVGYADGYPRILSNQ--- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G+  ++G   PI G++ MD  M D+T+   + VGD + + G      I   D
Sbjct: 298 --------GQVLVRGRKAPIRGRVCMDQIMIDVTEIPDVRVGDEVVLIGEQGTQKISATD 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  + T NY+++  I  R  + Y
Sbjct: 350 IAEKADTINYEIVCGISQRVPREY 373


>gi|83590990|ref|YP_430999.1| alanine racemase [Moorella thermoacetica ATCC 39073]
 gi|83573904|gb|ABC20456.1| alanine racemase [Moorella thermoacetica ATCC 39073]
          Length = 373

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 104/380 (27%), Positives = 166/380 (43%), Gaps = 25/380 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +  +  +IDL A+  N  ++   L+      A+VK NAYG G   +A      GV    V
Sbjct: 2   SRPVWAEIDLEAVARNVRAIKKILAPQTEIMAIVKANAYGHGAGPVARTALANGVSWLGV 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            ++ E + LR     A + +L    P     + + ++   + SV Q    +   +  G  
Sbjct: 62  ATLGEALDLRREGITAPLLILGYTPPEDAGRVVEADISQTVFSVDQARALNAAAAAVGTR 121

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L++DTG  RLG   +EA+       +     L  I +H A +D         QL  
Sbjct: 122 ARLHLKIDTGMGRLGFLPREAVTAARAIADLPHVTLEGIFTHFAASDAADKTYTQRQLGL 181

Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233
           F+ +I+  +           A+S  I+  P  HF L R GI LYG         K   + 
Sbjct: 182 FQQVIAELEKQGITFPWRHAANSGAIIDLPGTHFNLVRAGIILYGHYPSPEVQRKRLALT 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T + R++L+++  AG  +SYG   +    + IA   +GYADGY   LS         
Sbjct: 242 PVMTLKTRVVLVKEVPAGSYISYGCTYRTPGPARIATLPVGYADGYSRLLSNR------- 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  ++G   PI+G+I MD  M D+T    + VGD + +FG      + +++VA  
Sbjct: 295 ----AEVLVRGRRAPIVGRICMDQCMIDVTAIPEVRVGDEVVLFGRQGGQTLTVEEVAAW 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY++L  I  R  + Y
Sbjct: 351 MGTINYEILCLISKRVPRVY 370


>gi|323703375|ref|ZP_08115024.1| alanine racemase [Desulfotomaculum nigrificans DSM 574]
 gi|323531644|gb|EGB21534.1| alanine racemase [Desulfotomaculum nigrificans DSM 574]
          Length = 372

 Score =  432 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 103/380 (27%), Positives = 168/380 (44%), Gaps = 25/380 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            E +  +IDL A+++N   +  L   +    AVVK N YG G   +A A  +AG     V
Sbjct: 2   QEPIWAEIDLGAIRHNIKEVRRLVGPDREIMAVVKANGYGHGAVPVARAALSAGATRLAV 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             + E + LR       I VL  I P Q       ++   +         S+     G  
Sbjct: 62  ARLNEAMVLRQAGINVPILVLGFIPPEQLAAALTNHITLTLYRTDLAEEISRVAQKLGQP 121

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L+VDTG  RLG   ++ ++           +L  I +H A AD+        QL+R
Sbjct: 122 AVIHLKVDTGMGRLGFIPEQGIEEVKRVSQLAGLKLEGIYTHFAAADETDKSYTRWQLDR 181

Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQ 233
           F + IS  +           A+S+ I+  P  +  + RPGI +YG       +     ++
Sbjct: 182 FLSFISALEEQGVTFALRHCANSAAIIDHPEAYLDMVRPGIIIYGLYPSEEVNKSRVDLR 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +  + R+  ++    G  +SYG    + R+++I    +GYADGYP  LS         
Sbjct: 242 PAMALKTRVAHLKTVKPGTKISYGCTYTVPRETVIGSLPLGYADGYPRLLSSR------- 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
               G+  I+G   PI+G++ MD +M D+     ++VGD + IFG D    + +++VA  
Sbjct: 295 ----GQVIIRGQRAPIVGRVCMDQSMVDVGHIPGVKVGDEVLIFGRDGADYLPVEEVAAW 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  +G R  + Y
Sbjct: 351 LGTINYEMVCLVGARVPRIY 370


>gi|150402682|ref|YP_001329976.1| alanine racemase [Methanococcus maripaludis C7]
 gi|150033712|gb|ABR65825.1| alanine racemase [Methanococcus maripaludis C7]
          Length = 373

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 97/381 (25%), Positives = 167/381 (43%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +  +  +IDL+A+KNN   +  ++   ++  AVVK NAYG G  +++      G     V
Sbjct: 3   SHPIWAEIDLSAIKNNIQEIRRITNPKSQVMAVVKANAYGHGAIEVSKVCLENGADRLAV 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
               E ++LR       I V       + + + + ++   + S        K+    G  
Sbjct: 63  ARSTEALELRNAGITCPILVFGYCTEEEIEKMVENDITLTVYSFETAESIQKIAEKLGKH 122

Query: 122 HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               ++VDTG  RLG    +EA++        K  ++  I +H A AD+      ++Q  
Sbjct: 123 SKIHIKVDTGMGRLGFLPKKEAIETIKKIMELKNIKIEGIYTHFADADNSDKSYTTMQFS 182

Query: 181 RFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPM 232
           RF   + + +  E        ++S+ I+  P  H  L RPGI LYG         +   +
Sbjct: 183 RFTNFLHNLEENEIFIPIKHASNSAAIIDHPETHLNLVRPGIILYGLYPSELVHKERINL 242

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ +  I  +++      +SYG   +  + S IA   IGYADG+   L         
Sbjct: 243 KPAMSLKVLITHVKEVPENTKISYGCTFETKKPSKIASLPIGYADGFTRML--------- 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                G   I G  VP++G+I MD  M D++D  +++VGD + IFG      I +++   
Sbjct: 294 ---KDGYVLIHGSRVPVIGRICMDQCMIDVSDIENVQVGDVVTIFGTQENEKIPIEEFGE 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+L+  +  R  + Y
Sbjct: 351 KLGTINYELVCMVAGRVPRKY 371


>gi|134300698|ref|YP_001114194.1| alanine racemase [Desulfotomaculum reducens MI-1]
 gi|226711040|sp|A4J8G6|ALR_DESRM RecName: Full=Alanine racemase
 gi|134053398|gb|ABO51369.1| alanine racemase [Desulfotomaculum reducens MI-1]
          Length = 370

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/377 (27%), Positives = 169/377 (44%), Gaps = 23/377 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E +  +I+L A+++N   +  +   N    AVVK N YG G   +A     AG     V 
Sbjct: 3   EPIWAEINLEAIRHNIKEIRKMVGPNREIMAVVKANGYGHGAVPVARVALEAGATRLAVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122
            + E  +LR    +  I +L  I P Q     + N+   +         + +    G   
Sbjct: 63  RLSEAQELRRAGLKVPILLLGYISPDQIGDALEYNVTLTVFRFDLAKKIAAIAQGRGQRA 122

Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VDTG  R+G +  +E L             +  I +H A AD+        Q +R
Sbjct: 123 TVHLKVDTGMGRIGFTPDEEGLAEITAVCALNGLDVEGIYTHFATADEQDKSYTRWQFKR 182

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQ 233
           F  +++  +  GI       A+S+ I+  P  +  L RPGI LYG             +Q
Sbjct: 183 FMLVLNRLEEQGITFSLRHCANSAAIMEFPETYLDLVRPGIILYGLYPSEEVDKGKLLLQ 242

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T +ARI  ++K  +G  +SYG    + +++ IA   +GYADGYP  LS         
Sbjct: 243 PAMTLKARITHVKKVNSGTKISYGCTYTVPQETDIASLPLGYADGYPRLLS--------- 293

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALASGT 352
               G+  +KG    ++G++ MD  M D+     ++V D + IF G ++ +++VA   GT
Sbjct: 294 --SKGQVLVKGKRARVVGRVCMDQCMVDVGHIAEVKVHDEVIIFGGAELPVEEVATWLGT 351

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  +G+R  + Y
Sbjct: 352 INYEVVCWVGSRVPRVY 368


>gi|159905543|ref|YP_001549205.1| alanine racemase [Methanococcus maripaludis C6]
 gi|159887036|gb|ABX01973.1| alanine racemase [Methanococcus maripaludis C6]
          Length = 373

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 96/381 (25%), Positives = 169/381 (44%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +  +  +IDL+A+KNN   +  ++   ++  AVVK NAYG G  +++      G     V
Sbjct: 3   SHPIWAEIDLSAIKNNIKEIRRITNPKSQVMAVVKANAYGHGAIEVSKVCLENGADRLAV 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
               E ++LR       I V       + + + + ++I  + S+       K+    G  
Sbjct: 63  ARSTEALELRNAGITCPILVFGYCTEEEIEKMVENDIILTVYSLETANSIQKIAEKLGEH 122

Query: 122 HPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               +++DTG +RLG   + EA++        K  ++  I +H A AD+      ++Q  
Sbjct: 123 PKIHIKLDTGMSRLGFLPEKEAVEAIQKIMELKNIEVEGIYTHFADADNSDKTYTTMQFS 182

Query: 181 RFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPM 232
           RF   +   +  E        ++S+ I+  P  H  L RPGI LYG         +   +
Sbjct: 183 RFTNFLHDLEENEIFIPIKHASNSAAIIDHPETHLNLVRPGIILYGLYPSELVHKERIDL 242

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ +  +  +++      +SYG   +  + S IA   IGYADG+   L         
Sbjct: 243 KPAMSLKVLVTHVKEVPENTKISYGCTFETKKPSKIASLPIGYADGFTRML--------- 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                G   I G  VP++G+I MD  M D++D  +++VGD + IFG      I +++   
Sbjct: 294 ---KDGYVLIHGSRVPVIGRICMDQCMIDVSDIENVQVGDVVTIFGTQEHEKIPIEEFGE 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+L+  +  R  + Y
Sbjct: 351 KLGTINYELVCMVANRVPRKY 371


>gi|302390446|ref|YP_003826267.1| alanine racemase [Thermosediminibacter oceani DSM 16646]
 gi|302201074|gb|ADL08644.1| alanine racemase [Thermosediminibacter oceani DSM 16646]
          Length = 391

 Score =  429 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 100/378 (26%), Positives = 171/378 (45%), Gaps = 26/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R++I+L  L++N   +  + S NA   AVVK +AYG G  ++A    + G +   V 
Sbjct: 6   RPTRVEINLDNLEHNLKEIRRITSPNAGICAVVKADAYGHGAVEVAMTALSFGAKYLAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSH 122
            ++E V LR    +A I +L      Q   I +  +   + +V      S +    G+  
Sbjct: 66  FLDEAVVLREAGIRAPILILGFTPEDQFDKILEYGITQTVYNVRSAEVLSREAQKRGMKA 125

Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +R+G   +  +L      F     ++  I +H A AD+        Q ++
Sbjct: 126 KVHIKLDTGMSRIGFPAEPSSLSDIEKVFLLPGIEVEGIFTHFARADEEDKSFTEEQYKK 185

Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---Q 233
           +R  +        +     +A+S+ I+  P  H  + RPGI LYG              +
Sbjct: 186 YRETVGVLESRGLRVPIKHVANSAAIIDMPGMHLDMVRPGIILYGIYPSEEVQRSRITLK 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T + R+  ++   AG  +SYGG     + S+IA   +GYADGYP  LS         
Sbjct: 246 PVMTFKTRVSHVKTVPAGTPISYGGTFVTKKTSVIATLPVGYADGYPRLLSSR------- 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                +  IKG   P++G++ MD  M D+TD   ++ GD +++FG      +  D++A  
Sbjct: 299 ----AEVVIKGRRAPLVGRVCMDQCMVDVTDIPGVQPGDEVELFGTGENGGVTADEIAKI 354

Query: 350 SGTTNYDLLVRIGTRYAK 367
            GT  Y+++  I  R  +
Sbjct: 355 VGTIPYEIVCGISKRVPR 372


>gi|227824623|ref|ZP_03989455.1| alanine racemase [Acidaminococcus sp. D21]
 gi|226905122|gb|EEH91040.1| alanine racemase [Acidaminococcus sp. D21]
          Length = 381

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 105/376 (27%), Positives = 168/376 (44%), Gaps = 21/376 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             +  ++DL+A+ +N       L    +  AVVK +AYG G   +A A   AGV    V+
Sbjct: 4   RNVWAEVDLSAIAHNVQVTRKVLKPGTKICAVVKADAYGHGAVPVATAALAAGVNYLAVS 63

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
             +E ++LR     A I +L  +    EK + D N+   +  +       +  +      
Sbjct: 64  MTQEALELREAGIMAPILILGTMTEEHEKALVDYNITQTVYDLAVAQELSAAALQENKVA 123

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L VDTG NR+G   +EA D           +L  + SH A AD+        Q  +F
Sbjct: 124 KVHLAVDTGMNRIGCRPEEAADLAEAISKLPHVELEGMFSHFASADEMDKSFAESQYRKF 183

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTV 235
                  K  GI+     + +S+GI    +    + R GI+LYG   +D + +   ++  
Sbjct: 184 MEADRAIKDRGIQIPLVHIDNSAGITEMKHTECDMVRQGITLYGLWPSDDVERCLDLKPA 243

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ +A ++ ++   AGE + YG   +      +A   +GYADGY   LS           
Sbjct: 244 LSLKAEVVFVKDVPAGEKIGYGCTYETKAPMKVATIPLGYADGYSRALSNR--------- 294

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTN 354
             G   I+GY  P++G+I MD  M D+T+   +  GD   IFGP  + LD +A   GT  
Sbjct: 295 --GYITIRGYKAPVVGRICMDQFMVDVTNVPGVHKGDEAVIFGPGGVSLDQLAKWVGTIP 352

Query: 355 YDLLVRIGTRYAKFYT 370
           Y+L+  + TR  + YT
Sbjct: 353 YELMCLLSTRVPRKYT 368


>gi|134045109|ref|YP_001096595.1| alanine racemase [Methanococcus maripaludis C5]
 gi|132662734|gb|ABO34380.1| alanine racemase [Methanococcus maripaludis C5]
          Length = 373

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 93/381 (24%), Positives = 167/381 (43%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +  +  +IDL+A+KNN   +  ++   ++  AVVK NAYG G  +++      G     V
Sbjct: 3   SHPIWAEIDLSAIKNNIEEIRRITNPKSQVMAVVKANAYGHGAVEVSKVCLENGADRLAV 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
               E ++LR       I V       + + + + ++   + S    +   K     G  
Sbjct: 63  ARSTEALELRNAGITCPILVFGYCTEEEIEKMVENDITLTVYSFETASSIQKTAEKLGKH 122

Query: 122 HPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               ++VDTG +RLG   + +A++        +  ++  I +H A AD+      ++Q  
Sbjct: 123 PKIHIKVDTGMSRLGFLPRKDAVETIQKIMELENIEVEGIYTHFADADNSDKTYTTLQFS 182

Query: 181 RFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPM 232
           RF   +   +  E        ++S+ I+  P  H  L RPGI LYG         +   +
Sbjct: 183 RFTNFLHDLEENEIFIPIKHASNSAAIIDHPETHLNLVRPGIILYGLYPSELVHKERINL 242

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ +  +  +++      +SYG   +  + S IA   IGYADG+   L         
Sbjct: 243 KPAMSLKVLVTHVKEVPENTKISYGCTFETKKPSKIASLPIGYADGFTRMLKN------- 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G   I G  VP++G+I MD  M D++   +++VGD + IFG      I +++   
Sbjct: 296 -----GYVLIHGSRVPVIGRICMDQCMIDVSYIENVQVGDVVTIFGTQENETIPIEEFGE 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+L+  + +R  + Y
Sbjct: 351 KLGTINYELVCMVASRVPRKY 371


>gi|188584948|ref|YP_001916493.1| alanine racemase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349635|gb|ACB83905.1| alanine racemase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 390

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 168/372 (45%), Gaps = 23/372 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I+L  L  N++ +     N +   ++K + YG G  +IA  L N GV    V  ++E V
Sbjct: 13  EINLDNLSYNFNRIREHVNNKKIMGIIKADGYGHGAVEIAEELLNQGVDYLGVAILDEAV 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQV 128
           +LR     A I +L         +     + P I +       S+     G +    +++
Sbjct: 73  ELRKAGIAAPILILGYTPVEHVDVCLKYGITPTIYTYEMAEALSQTARKMGKTAFVHVKI 132

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  R+G++ + + +F  N       ++  + +H + AD+        Q+  F   +  
Sbjct: 133 DTGMGRIGIAPENSAEFVKNISKLPSLEVEGVFTHFSVADEEDKTYTQQQINSFEKALKM 192

Query: 189 Y--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241
              +GIE      A+S   +  P+ +F + R G++L+G   +  + +   ++ V++ + +
Sbjct: 193 LEDEGIEIPLKHAANSPATIDLPDAYFDMVRVGLALFGLYPSPHMKEKISLKPVMSLKTQ 252

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  +++   G  +SYG +     +S+I    +GYADG+   LS +           G+  
Sbjct: 253 VSHVKQVPKGTSISYGRKFITEDESIIGTLPVGYADGFTRLLSNI-----------GEVI 301

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDL 357
           + G  VPI+G I MD  MF   D   I +GD + I G      I ++D+A   GT NY++
Sbjct: 302 VNGKRVPIVGAICMDQCMFLGDDVPEIGIGDEVVIIGEQDGTQITVEDIADKLGTINYEI 361

Query: 358 LVRIGTRYAKFY 369
           +  +  R  + Y
Sbjct: 362 VTMVDKRVPRLY 373


>gi|269964436|ref|ZP_06178677.1| alanine racemase [Vibrio alginolyticus 40B]
 gi|269830774|gb|EEZ84992.1| alanine racemase [Vibrio alginolyticus 40B]
          Length = 366

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 112/380 (29%), Positives = 184/380 (48%), Gaps = 25/380 (6%)

Query: 1   MHSNEF-----LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           M SN        +  IDL+AL++N   + A +  ++  AVVK N YG G   +A      
Sbjct: 1   MMSNPMSYMKAAKACIDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHA--N 58

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
               F V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +
Sbjct: 59  HADAFGVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQ 118

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSH 173
                      L++D+G +RLG+  ++  +F         + +    +SH  CAD+  S 
Sbjct: 119 A-DLETPVVVWLKIDSGMHRLGVRPEQYDEFVTRLKECPNVAKPLRYMSHFGCADELDSD 177

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SH 230
           +   Q+ERF++L S  +G E SLA+S+G+L  P  H    RPGI +YG +   +K     
Sbjct: 178 ITPQQIERFKSLTSGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDL 236

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             Q V+T ++ +I +R+   GE V YGG     RD+ + V A+GY DGYP +        
Sbjct: 237 GYQPVMTLKSHLIAVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN----- 291

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                 G   ++ G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   
Sbjct: 292 ------GTPVWVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHI 345

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           GT  Y+L+ ++  R    Y+
Sbjct: 346 GTIAYELVTKLTPRVEMEYS 365


>gi|45359075|ref|NP_988632.1| alanine racemase [Methanococcus maripaludis S2]
 gi|45047950|emb|CAF31068.1| Alanine racemase [Methanococcus maripaludis S2]
          Length = 373

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 93/381 (24%), Positives = 169/381 (44%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +  +  +IDL+A+KNN   +  ++   ++  AVVK NAYG G  +++      G     V
Sbjct: 3   SHPIWAEIDLSAIKNNIKEIRRITNPKSQVMAVVKANAYGHGSVEVSKICLENGADRLAV 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
               E ++LR       I V   +   +   + + ++   + S+       K+    G  
Sbjct: 63  ARSTEALELRDAGITCPILVFGYVTEEEILKMVENDITLTVYSLEIANSIQKIAEKLGKH 122

Query: 122 HPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               ++VDTG +RLG   ++ +++        +  ++  I +H A AD+      ++Q  
Sbjct: 123 SKIHIKVDTGMSRLGFLPEKSSVETIKKIRELENIEVEGIYTHFADADNSDKTYTTMQFS 182

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPM 232
           +F + +   +  GI+      ++S+ I+  P  H  + RPGI LYG         +   +
Sbjct: 183 KFTSFLHDLEENGIDIPIKHASNSAAIIDHPETHLNMVRPGIILYGLYPSELVHKERINL 242

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  ++ +  +  ++       +SYG   +  + S IA   IGYADG+   L         
Sbjct: 243 QPAMSLKVLVTHVKDVPENTKISYGCTFETKKQSKIASLPIGYADGFTRMLRN------- 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G   I G  VP++G+I MD  M D+T   ++ VGD + +FG D    I +++   
Sbjct: 296 -----GNVLIHGLRVPVVGRICMDQCMIDVTSIENVNVGDVVTVFGKDGTEKISIEEFGN 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+L+  +  R  + Y
Sbjct: 351 KLGTINYELVCMVSARVPRIY 371


>gi|326792091|ref|YP_004309912.1| alanine racemase [Clostridium lentocellum DSM 5427]
 gi|326542855|gb|ADZ84714.1| alanine racemase [Clostridium lentocellum DSM 5427]
          Length = 377

 Score =  425 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 168/385 (43%), Gaps = 27/385 (7%)

Query: 1   MHSNEF-LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M S+   +  +++L A+++N+  +     N     A+VK + YG G +++A  L   GV 
Sbjct: 1   MESHRPRVVAEVNLGAIEHNYKQIRQHIPNHTEIMAIVKADGYGHGAKEVANFLQEQGVN 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
            F V  V EG +LR     + I VL        K + + +L   + S       S +   
Sbjct: 61  RFAVAIVAEGEELRSSGITSPILVLGYTPRADIKTLIENDLTQTVFSYEMAKTISDEAGR 120

Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +    L+VDTG  R+G  S  ++++            L  I +H + AD+  +    
Sbjct: 121 LGKTVNIHLKVDTGMGRIGFLSSPKSIEEILMITKLPHINLEGIFTHFSTADEEDTSYTK 180

Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NK 228
            Q   F   +     +         A+S+ I+     H  L RPGI LYG         K
Sbjct: 181 EQWSIFEGFLKELSEVGLELPIIHAANSAAIMCHEYTHLNLVRPGIILYGYYPSPYLGGK 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +T + +++ +++   G+ V YG +    + + IA   +GYADGY   L     
Sbjct: 241 VLDLEPAMTLKTQVVHVKELPEGQYVGYGRKFYTHQKTKIATIPVGYADGYSRNLGN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G+  I+G   PI+G I MD  M D+T    + V D + +FG      I ++
Sbjct: 298 --------KGRVLIRGQYAPIIGNICMDQFMVDVTHIKGVSVEDEVVLFGKQQDAVIPVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++A + GT NY+++  IG R  + Y
Sbjct: 350 EIAQSLGTINYEIVCMIGKRVPRIY 374


>gi|225174429|ref|ZP_03728428.1| alanine racemase [Dethiobacter alkaliphilus AHT 1]
 gi|225170214|gb|EEG79009.1| alanine racemase [Dethiobacter alkaliphilus AHT 1]
          Length = 379

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 109/381 (28%), Positives = 170/381 (44%), Gaps = 26/381 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                 +IDL A+ +N        S   R  A+VK + YG G  ++A     AGV    V
Sbjct: 6   QRPAWAEIDLGAIGHNIRQFKQHVSSQTRLMAIVKADGYGHGAVEVAREAVAAGVSFLGV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVS 121
             VEE ++LR       I +L          +   NL P + +      F    +  G  
Sbjct: 66  GMVEEALELRENGIDTPILILGFTPKAYAPYLCQYNLTPTVFTPEEADAFAEAALRAGND 125

Query: 122 HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               ++VDTG  R+G    ++A  F  +  +     L+ + +H A ADDP +     QLE
Sbjct: 126 LAVHVKVDTGMGRVGCFPCEDADGFISHVASLPGLSLTGLYTHFAAADDPDATYTRWQLE 185

Query: 181 RFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232
           RF  LI+    +GI       A+S+G +  P  H  + R GIS+YG         +   +
Sbjct: 186 RFLKLIARLEARGIHIPVKHAANSAGAISHPETHLDMVRLGISVYGLYPADEVCRREVKL 245

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ +A++I ++   AG  VSYG      R + IA   +GY DGYP  LS        
Sbjct: 246 RPAMSLKAKVIFVKDVPAGTKVSYGCTYVTERAARIATLPLGYGDGYPRHLSNC------ 299

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G+  I G   P++G++ MD+TM D+ D   +  GD + +FG      + +D+VA 
Sbjct: 300 -----GQVLIHGRRAPVVGRVCMDLTMIDVQDIAEVSAGDEVVLFGRQGDAFLSVDEVAR 354

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY+++ RI  R  + Y
Sbjct: 355 WIDTINYEVVTRISRRIPRVY 375


>gi|254230408|ref|ZP_04923789.1| alanine racemase [Vibrio sp. Ex25]
 gi|151937067|gb|EDN55944.1| alanine racemase [Vibrio sp. Ex25]
          Length = 366

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 183/375 (48%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   +  +  IDL+AL++N   + A +  ++  AVVK N YG G   +A          F
Sbjct: 6   MSYMKAAKACIDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHA--NHADAF 63

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 64  GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQA-DLE 122

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++  +F         + +    +SH  CAD+  SH+   Q
Sbjct: 123 TPVVVWLKIDSGMHRLGVRPEQYDEFVTRLKECPNVAKPLRYMSHFGCADELDSHITPQQ 182

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTV 235
           +E F++L S  +G E SLA+S+G+L  P  H    RPGI +YG +   +K       Q V
Sbjct: 183 IELFKSLTSGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDLGYQPV 241

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+   GE V YGG     RD+ + V A+GY DGYP +             
Sbjct: 242 MTLKSHLIAVREVKKGESVGYGGMWTSKRDTKVGVIAVGYGDGYPRSAPN---------- 291

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y
Sbjct: 292 -GTPVWVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHIGTIAY 350

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++  R    Y+
Sbjct: 351 ELVTKLTPRVEMEYS 365


>gi|260775631|ref|ZP_05884528.1| alanine racemase biosynthetic [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608812|gb|EEX34977.1| alanine racemase biosynthetic [Vibrio coralliilyticus ATCC BAA-450]
          Length = 361

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 178/375 (47%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   +     IDL AL++N   + + + N++  AVVK N+YG G   +A    +     F
Sbjct: 1   MSYMKAATAFIDLDALQHNLKQIKSQAPNSKIMAVVKANSYGHGLRHVAKHATD--ADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRACGVVTPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLEALEQA-ELD 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++  DF       + + +    +SH  CAD+      + Q
Sbjct: 118 TPVVVWLKIDSGMHRLGVRPEQYTDFVSRLKACRNVAKPLRYMSHFGCADELDKSTTTEQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235
            E F  L    +G E SLA+S+G+L   N      RPGI +YG +   +K+      Q V
Sbjct: 178 TELFLALTDGCEG-ERSLAASAGLLAWQNSQLDWVRPGIIMYGVSPFNDKTAQQMGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R   AGE V YGG     RD+ + V AIGY DGYP T             
Sbjct: 237 MTLKSHLIAVRDVKAGESVGYGGMWTSQRDTKVGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+    + +VGD   ++G  +  ++VA   GT  Y
Sbjct: 287 -GTPVLVNGRKVPIAGRVSMDMLTVDLGPDANDKVGDEAILWGQSLPAEEVACHIGTIAY 345

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++ +R    Y+
Sbjct: 346 ELVTKLTSRVEMEYS 360


>gi|262393111|ref|YP_003284965.1| alanine racemase biosynthetic [Vibrio sp. Ex25]
 gi|262336705|gb|ACY50500.1| alanine racemase biosynthetic [Vibrio sp. Ex25]
          Length = 361

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 183/375 (48%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   +  +  IDL+AL++N   + A +  ++  AVVK N YG G   +A          F
Sbjct: 1   MSYMKAAKACIDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHA--NHADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQA-DLE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++  +F         + +    +SH  CAD+  SH+   Q
Sbjct: 118 TPVVVWLKIDSGMHRLGVRPEQYDEFVTRLKECPNVAKPLRYMSHFGCADELDSHITPQQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTV 235
           +E F++L S  +G E SLA+S+G+L  P  H    RPGI +YG +   +K       Q V
Sbjct: 178 IELFKSLTSGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDLGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+   GE V YGG     RD+ + V A+GY DGYP +             
Sbjct: 237 MTLKSHLIAVREVKKGESVGYGGMWTSKRDTKVGVIAVGYGDGYPRSAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y
Sbjct: 287 -GTPVWVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHIGTIAY 345

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++  R    Y+
Sbjct: 346 ELVTKLTPRVEMEYS 360


>gi|227821452|ref|YP_002825422.1| alanine racemase [Sinorhizobium fredii NGR234]
 gi|227340451|gb|ACP24669.1| alanine racemase [Sinorhizobium fredii NGR234]
          Length = 409

 Score =  422 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 178/376 (47%), Positives = 241/376 (64%), Gaps = 6/376 (1%)

Query: 1   MHSNEFL----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           MHS EFL    RL IDLTA+ +NW +MN  SG AR AAV+K NAYG+G  + AP LY AG
Sbjct: 31  MHSPEFLAASNRLTIDLTAIADNWRTMNERSGKARAAAVLKANAYGIGVAQAAPTLYAAG 90

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            +DFFV   EEG +LR   P ARI++L G+ PG E+  F  +L+P+I+S  QL  +   +
Sbjct: 91  ARDFFVADAEEGAELRPLLPDARIYILAGMWPGNEEFFFANDLVPIINSEEQLAVFMAAL 150

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           S    HP  L VDTG NRLGLS++EA+   H+          L++SHLAC DDP   +N 
Sbjct: 151 SERGDHPCVLHVDTGMNRLGLSVEEAIALAHDPARPASFSPVLVMSHLACGDDPRHPMNL 210

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
            QL+RFR + + ++G+ ASLA+S G+ LG +YHF LTRPGI++YGG    +  +PM+ VV
Sbjct: 211 YQLQRFREVTAAFEGVPASLANSGGVFLGEDYHFDLTRPGIAVYGGEAVNDALNPMKPVV 270

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           TAEARI+ +R   +G   SYG   +  RDS IA  AIGYADGY  ++SG       +   
Sbjct: 271 TAEARILQLRTVPSGGTASYGASARFARDSRIATVAIGYADGYHRSVSGGGVTLRQATPS 330

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN 354
           G  GF+ G  VP +G++TMD+++FD+TD     +  GDYI++FG ++ +DDVA A GT  
Sbjct: 331 GAYGFLHGKKVPHVGRVTMDLSLFDVTDLPERAVRAGDYIELFGRNVAIDDVARAGGTIG 390

Query: 355 YDLLVRIGTRYAKFYT 370
           Y+LL  +G RY + Y 
Sbjct: 391 YELLTSLGHRYCRTYV 406


>gi|91227270|ref|ZP_01261695.1| alanine racemase [Vibrio alginolyticus 12G01]
 gi|91188664|gb|EAS74953.1| alanine racemase [Vibrio alginolyticus 12G01]
          Length = 358

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 109/369 (29%), Positives = 180/369 (48%), Gaps = 20/369 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +  IDL+AL++N   + A +  ++  AVVK N YG G   +A          F V  +E
Sbjct: 4   AKACIDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHA--NHADAFGVARIE 61

Query: 67  EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR       I +L G + PG   ++   N+  V+    QL    +           
Sbjct: 62  EALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQA-DLETPVVVW 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++D+G +RLG+  ++  DF         + +    +SH  CAD+  S +   Q+E F++
Sbjct: 121 LKIDSGMHRLGVRPEQYDDFVTRLKECPNVAKPLRYMSHFGCADELDSDITPQQIELFKS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEAR 241
           L S  +G E SLA+S+G+L  P  H    RPGI +YG +   +K       Q V+T ++ 
Sbjct: 181 LTSGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDLGYQPVMTLKSH 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+   GE V YGG     RD+ + V A+GY DGYP +              G   +
Sbjct: 240 LIAVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN-----------GTPVW 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 289 VNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHIGTIAYELVTKL 348

Query: 362 GTRYAKFYT 370
             R    Y+
Sbjct: 349 TPRVEMEYS 357


>gi|168185661|ref|ZP_02620296.1| alanine racemase [Clostridium botulinum C str. Eklund]
 gi|169296525|gb|EDS78658.1| alanine racemase [Clostridium botulinum C str. Eklund]
          Length = 387

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 108/380 (28%), Positives = 165/380 (43%), Gaps = 26/380 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I+L  L +N   +  LS       +VK +AYG G   I P L   G     V  
Sbjct: 6   RPVWAEINLDNLASNMKEIKKLSNTKEIIGIVKADAYGHGALDIVPTLIENGATGLAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HP 123
           V EGV+LR    +  I VL    P    ++   ++   + S+      SK          
Sbjct: 66  VSEGVELRRGGIECPIMVLGFTPPSLIDMLLKHDIEQTVFSLDYAKELSKAAEKMHKIAK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG  R+G    +E++            ++  I SH + AD+ +   +S QL +F
Sbjct: 126 IHIAVDTGMGRIGFLPNEESIQDVKKISMLPNIKIKGIFSHFSTADEENKEYSSYQLNQF 185

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
                  K          +++S+ I+  P   F+  RPGI LYG             ++ 
Sbjct: 186 NKFYEGLKKENVNIETRHISNSAAIMDLPETKFEGVRPGIILYGYYPSNEVDKSKLKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  +  I+ I+K  +GE +SYG + K  R+S IA   +GYADGY   L G         
Sbjct: 246 VMQLKTNIVHIKKIPSGEYISYGRKFKTDRESFIATLPVGYADGYTRLLFG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALA 349
               K  I G + P++G+I MD  M DITD    I+VG+ + + G      I  DD+A  
Sbjct: 297 --KAKVIINGQLAPVVGRICMDQCMVDITDIKGDIKVGEEVILIGQKNGIKIDADDIAEM 354

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  I  R  + Y
Sbjct: 355 LGTINYEIICMISKRVPRVY 374


>gi|222085428|ref|YP_002543958.1| alanine racemase [Agrobacterium radiobacter K84]
 gi|221722876|gb|ACM26032.1| alanine racemase [Agrobacterium radiobacter K84]
          Length = 387

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/366 (50%), Positives = 243/366 (66%), Gaps = 2/366 (0%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DL AL  NW  M   SG ART+AVVK +AYGLG E +  ALY AG +DFFV + +
Sbjct: 16  LRLTVDLDALVENWRDMAHRSGRARTSAVVKADAYGLGIEDVGEALYLAGARDFFVATAD 75

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EG  LRLY P ARIFVL GI PG E++ F+ +L+PVI+S  QLTF+  ++S    +P AL
Sbjct: 76  EGATLRLYAPDARIFVLSGIWPGMERVFFENDLVPVIASEEQLTFWMSVLSDYGDYPCAL 135

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVDTGFNRLGL +++AL    +          L++SHLAC DDP++ +N  QLE FR + 
Sbjct: 136 QVDTGFNRLGLPMEDALALADDVSRPASFAPVLVMSHLACGDDPANPMNRQQLEAFRKVS 195

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + ++GIEASLA+S+GI LGP YHF LTRPGI+ YGG      ++PM+ V TAEARII  R
Sbjct: 196 AAFEGIEASLANSAGIFLGPEYHFDLTRPGIATYGGEAVPGIANPMRPVATAEARIIQTR 255

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE V YG   +LTRDS +A+ + GYADGY    S        +   GG GFI G+ 
Sbjct: 256 FVKAGETVGYGRAMQLTRDSRLAIVSAGYADGYMRGQSSGGVPLRQTDLPGGHGFIAGHR 315

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VP+ G+ITMD+T+FDITD     +  GDY+++FG +I +DD A A+GT  Y++L  +G R
Sbjct: 316 VPVAGRITMDLTIFDITDLPDNLVRAGDYVELFGSNILVDDAARAAGTIGYEMLTSLGLR 375

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 376 HERRYV 381


>gi|229525066|ref|ZP_04414471.1| alanine racemase biosynthetic [Vibrio cholerae bv. albensis VL426]
 gi|229338647|gb|EEO03664.1| alanine racemase biosynthetic [Vibrio cholerae bv. albensis VL426]
          Length = 375

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 177/375 (47%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F
Sbjct: 12  MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 70  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 128

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF         + +    +SH  CAD+        Q
Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYQDFVTRLHQCANVAKPLRYMSHFGCADELDKSTTVEQ 188

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V
Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y
Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++ +R    Y+
Sbjct: 357 ELVTKLTSRVEMSYS 371


>gi|255659976|ref|ZP_05405385.1| alanine racemase [Mitsuokella multacida DSM 20544]
 gi|260847728|gb|EEX67735.1| alanine racemase [Mitsuokella multacida DSM 20544]
          Length = 369

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 101/376 (26%), Positives = 163/376 (43%), Gaps = 21/376 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N     +IDL AL++N+  +   + G A+  AVVK +AYG G   +A     AG     V
Sbjct: 3   NRAAWAEIDLAALRHNYEEIKKNIRGGAKLCAVVKADAYGHGALAVARVAVEAGASYLAV 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVS 121
            ++ E ++LR       I +L  + P + + I D ++  V+  +P     S + +    +
Sbjct: 63  ATLGEAIELREAGFTVPILLLGLVLPDEARDIVDYDVTQVVCELPLAEAISREAVRQHKT 122

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L+V+TG  R+G+  +E              ++  + SH A AD         QL +
Sbjct: 123 AKVHLKVETGMGRIGIRPEEIGALAAAVKQLPNIEIEGMFSHFAMADSKDKTYTKGQLAK 182

Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
           F   +   +          +A S+ IL  P  H+ + R G+  YG       +HP+  + 
Sbjct: 183 FEQALRAVEEAGVKLKIRHIAESAAILEIPEAHYDMVRAGVIQYGMWPSDEVTHPIDLKP 242

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   A+++ ++    GE + YG Q    R+S IA   IGYADGY               
Sbjct: 243 VMKVCAKVVFMKTLHPGESIGYGRQFIAERESRIATLPIGYADGYIRAYGN--------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTT 353
             GG     G   PI G++ MD  M D+TD   ++ GD   +FG + +  D  A    T 
Sbjct: 294 --GGYVSFGGRKAPIAGRVCMDQVMVDVTDLPDVKEGDTAVLFGDETVTADTAAKWLNTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   I  R  + Y
Sbjct: 352 NYEVTCLISPRVPRVY 367


>gi|323140360|ref|ZP_08075291.1| alanine racemase [Phascolarctobacterium sp. YIT 12067]
 gi|322415164|gb|EFY05952.1| alanine racemase [Phascolarctobacterium sp. YIT 12067]
          Length = 372

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 99/380 (26%), Positives = 172/380 (45%), Gaps = 21/380 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           MH       +I+L A+ +N     A L    +  AVVK +AYG G  ++A      G   
Sbjct: 1   MHIQRGAWAEINLDAVAHNVQMAKANLKPTTKLCAVVKADAYGHGAVRVAQEAARNGADF 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSC 118
           F V  ++EGVKLR    +  I VL  + P   +I    ++   +    +     +  +  
Sbjct: 61  FAVALLQEGVKLREAGIETPILVLGSMLPEVAEICVRYDISHAVFDEERLYALNAAALKL 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  +++DTG +R+G+ +++A  F   + +     +  + SH A AD       + Q
Sbjct: 121 HTKAKIHIKIDTGMHRIGVHVRDAGRFAKLAASLPGIYIEGVFSHFATADADDKQYAAYQ 180

Query: 179 LERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHP 231
            ERF+  +     +G+      +A+S+ +     Y   + R GI+LYG      I+    
Sbjct: 181 FERFQEALRLIEAEGVHIPIRHIANSAALTELQEYQLDMVRQGITLYGLHPAHMIDCYKD 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V+T + ++  ++    GE + YG    LTR S+IA   IGYADG    LS       
Sbjct: 241 FEPVMTVKTQVAFVKTLPPGETIGYGRTYTLTRPSVIATVPIGYADGVSRRLSNR----- 295

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALAS 350
                 G   + G   PI+G++ MD TM D+TD   +++G  + +F G ++ ++ VA  +
Sbjct: 296 ------GYMLVNGKKAPIIGRVCMDQTMLDVTDIPDVKLGSEVIVFGGRELPMELVAEWA 349

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
            T  Y+++  +  R  + Y 
Sbjct: 350 DTICYEIVCDVSPRVPREYV 369


>gi|15640399|ref|NP_230026.1| alanine racemase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121590967|ref|ZP_01678287.1| alanine racemase, biosynthetic [Vibrio cholerae 2740-80]
 gi|153216658|ref|ZP_01950565.1| alanine racemase, biosynthetic [Vibrio cholerae 1587]
 gi|153823514|ref|ZP_01976181.1| alanine racemase, biosynthetic [Vibrio cholerae B33]
 gi|153827276|ref|ZP_01979943.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-2]
 gi|153830458|ref|ZP_01983125.1| alanine racemase, biosynthetic [Vibrio cholerae 623-39]
 gi|227080584|ref|YP_002809135.1| alanine racemase, biosynthetic [Vibrio cholerae M66-2]
 gi|229504955|ref|ZP_04394466.1| alanine racemase biosynthetic [Vibrio cholerae BX 330286]
 gi|229508607|ref|ZP_04398103.1| alanine racemase biosynthetic [Vibrio cholerae B33]
 gi|229516019|ref|ZP_04405470.1| alanine racemase biosynthetic [Vibrio cholerae RC9]
 gi|229526947|ref|ZP_04416344.1| alanine racemase biosynthetic [Vibrio cholerae 12129(1)]
 gi|229606347|ref|YP_002876995.1| alanine racemase [Vibrio cholerae MJ-1236]
 gi|254227117|ref|ZP_04920668.1| alanine racemase, biosynthetic [Vibrio cholerae V51]
 gi|254286204|ref|ZP_04961163.1| alanine racemase, biosynthetic [Vibrio cholerae AM-19226]
 gi|254851683|ref|ZP_05241033.1| alanine racemase [Vibrio cholerae MO10]
 gi|298501269|ref|ZP_07011067.1| alanine racemase [Vibrio cholerae MAK 757]
 gi|9654790|gb|AAF93545.1| alanine racemase, biosynthetic [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547193|gb|EAX57320.1| alanine racemase, biosynthetic [Vibrio cholerae 2740-80]
 gi|124114169|gb|EAY32989.1| alanine racemase, biosynthetic [Vibrio cholerae 1587]
 gi|125620360|gb|EAZ48743.1| alanine racemase, biosynthetic [Vibrio cholerae V51]
 gi|126518959|gb|EAZ76182.1| alanine racemase, biosynthetic [Vibrio cholerae B33]
 gi|148874060|gb|EDL72195.1| alanine racemase, biosynthetic [Vibrio cholerae 623-39]
 gi|149738824|gb|EDM53166.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-2]
 gi|150423619|gb|EDN15561.1| alanine racemase, biosynthetic [Vibrio cholerae AM-19226]
 gi|227008472|gb|ACP04684.1| alanine racemase, biosynthetic [Vibrio cholerae M66-2]
 gi|229335559|gb|EEO01039.1| alanine racemase biosynthetic [Vibrio cholerae 12129(1)]
 gi|229346922|gb|EEO11889.1| alanine racemase biosynthetic [Vibrio cholerae RC9]
 gi|229354375|gb|EEO19302.1| alanine racemase biosynthetic [Vibrio cholerae B33]
 gi|229358013|gb|EEO22929.1| alanine racemase biosynthetic [Vibrio cholerae BX 330286]
 gi|229369002|gb|ACQ59425.1| alanine racemase biosynthetic [Vibrio cholerae MJ-1236]
 gi|254847388|gb|EET25802.1| alanine racemase [Vibrio cholerae MO10]
 gi|297540023|gb|EFH76086.1| alanine racemase [Vibrio cholerae MAK 757]
          Length = 375

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 177/374 (47%), Gaps = 20/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F
Sbjct: 12  MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 70  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 128

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF       + + +    +SH  CAD+        Q
Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 188

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V
Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y
Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356

Query: 356 DLLVRIGTRYAKFY 369
           +L+ ++ +R    Y
Sbjct: 357 ELVTKLTSRVEMSY 370


>gi|297582256|ref|ZP_06944171.1| alanine racemase [Vibrio cholerae RC385]
 gi|297533514|gb|EFH72360.1| alanine racemase [Vibrio cholerae RC385]
          Length = 375

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/374 (30%), Positives = 177/374 (47%), Gaps = 20/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F
Sbjct: 12  MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 70  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 128

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++  DF       + + +    +SH  CAD+        Q
Sbjct: 129 TPVMVWLKIDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 188

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V
Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y
Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356

Query: 356 DLLVRIGTRYAKFY 369
           +L+ ++ +R    Y
Sbjct: 357 ELVTKLTSRVEMSY 370


>gi|229512608|ref|ZP_04402078.1| alanine racemase biosynthetic [Vibrio cholerae TMA 21]
 gi|229350390|gb|EEO15340.1| alanine racemase biosynthetic [Vibrio cholerae TMA 21]
          Length = 375

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 177/374 (47%), Gaps = 20/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F
Sbjct: 12  MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLHHIARHAL--GADAF 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 70  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 128

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF       + + +    +SH  CAD+        Q
Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 188

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V
Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y
Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356

Query: 356 DLLVRIGTRYAKFY 369
           +L+ ++ +R    Y
Sbjct: 357 ELVTKLTSRVEMSY 370


>gi|156972397|ref|YP_001443304.1| alanine racemase [Vibrio harveyi ATCC BAA-1116]
 gi|156523991|gb|ABU69077.1| hypothetical protein VIBHAR_00017 [Vibrio harveyi ATCC BAA-1116]
          Length = 366

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 108/380 (28%), Positives = 184/380 (48%), Gaps = 25/380 (6%)

Query: 1   MHSNEFLRLK-----IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           M SN    +K     IDL+AL++N   +   + +++  AVVK N YG G   +A    + 
Sbjct: 1   MMSNAMSYMKAAMACIDLSALQHNLQRVKQQAPDSKVMAVVKANGYGHGLRHVAKHATH- 59

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
               F V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +
Sbjct: 60  -ADAFGVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLVALEQ 118

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSH 173
                      L++D+G +RLG+  ++  +F         + +    +SH  CAD+  + 
Sbjct: 119 A-ELETPVVVWLKIDSGMHRLGVRPEQYDEFITRLKECPNVAKPLRYMSHFGCADELDNS 177

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSH 230
           + + Q++ F +L +  +G E SLA+S+G+L  P       RPGI +YG +    K  +  
Sbjct: 178 ITTEQIDLFMSLTAGCQG-ERSLAASAGLLAWPQSQLDWVRPGIIMYGVSPFNDKTAQDM 236

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             + V+T ++ +I +R+   GE V YGG     RD+ + V A+GY DGYP T        
Sbjct: 237 GYKPVMTLKSHLIAVREVKKGESVGYGGMWTSERDTKVGVIAVGYGDGYPRTAPN----- 291

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                 G    + G  VPI G+++MDM   D+    + +V D   ++G D+ +++VA   
Sbjct: 292 ------GTPVLVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKDLPVEEVASHI 345

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           GT  Y+L+ ++ +R    Y+
Sbjct: 346 GTIAYELVTKLTSRVEMEYS 365


>gi|269961478|ref|ZP_06175842.1| alanine racemase [Vibrio harveyi 1DA3]
 gi|269833855|gb|EEZ87950.1| alanine racemase [Vibrio harveyi 1DA3]
          Length = 369

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 184/380 (48%), Gaps = 25/380 (6%)

Query: 1   MHSNEFLRLK-----IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           M SN    +K     IDL+AL++N   +   +  ++  AVVK N YG G   +A    + 
Sbjct: 4   MMSNAMSYMKAAMACIDLSALQHNLQRVKEQAPESKVMAVVKANGYGHGLRHVAKHATH- 62

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
               F V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +
Sbjct: 63  -ADAFGVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLAALEQ 121

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSH 173
                      L++D+G +RLG+  ++  +F         + +    +SH  CAD+  + 
Sbjct: 122 A-DLETPVVVWLKIDSGMHRLGVRPEQYDEFITRLKECPNVAKPLRYMSHFGCADELDNS 180

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SH 230
           + + Q++ F +L +  +G E SLA+S+G+L  P       RPGI +YG +   +K     
Sbjct: 181 ITTEQIDLFMSLTAGCQG-ERSLAASAGLLAWPQSQLDWVRPGIIMYGVSPFDDKTAQDM 239

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             + V+T ++ +I +R+   GE V YGG     RD+ + V A+GY DGYP T        
Sbjct: 240 GYKPVMTLKSHLIAVREVKKGESVGYGGMWTSERDTKVGVIAVGYGDGYPRTAPN----- 294

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                 G   F+ G  VPI G+++MDM   D+    + +V D   ++G D+ +++VA   
Sbjct: 295 ------GTPVFVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKDLPVEEVASHI 348

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           GT  Y+L+ ++ +R    Y+
Sbjct: 349 GTIAYELVTKLTSRVEMEYS 368


>gi|323493025|ref|ZP_08098160.1| alanine racemase [Vibrio brasiliensis LMG 20546]
 gi|323312723|gb|EGA65852.1| alanine racemase [Vibrio brasiliensis LMG 20546]
          Length = 358

 Score =  419 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 177/365 (48%), Gaps = 20/365 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   +   + +++  AVVK NAYG G   +A +    G   F V  +EE ++
Sbjct: 8   IDLEALQHNLQQIKLQAPSSKIMAVVKANAYGHGLRHVAKSAK--GADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G + PG   ++   N+  V+    QL    +           L++D
Sbjct: 66  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLVALEQA-ELETPVVVWLKID 124

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLG+  ++  DF         + +    +SH  CAD+    + + Q E F TL   
Sbjct: 125 SGMHRLGVRPEQYSDFVTRLKACDNVAKPLRYMSHFGCADELDRPITNEQTELFMTLTEG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILI 245
            +G E SLA+S+G+L  P+      RPGI +YG +    K  +    Q V+T ++ +I +
Sbjct: 185 CEG-ERSLAASAGLLAWPDSQLDWVRPGIIMYGVSPFNDKTAQDLGYQPVMTLKSHLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE V YGG     RD+ + V AIGY DGYP T              G    + G 
Sbjct: 244 RDVKAGESVGYGGVWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVLVNGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI G+++MDM   D+      +VGD   ++G D+  ++VA   GT  Y+L+ ++ +R 
Sbjct: 293 KVPISGRVSMDMLTVDLGPDAKDQVGDEAILWGRDLPAEEVAGHIGTIAYELVTKLTSRV 352

Query: 366 AKFYT 370
              Y+
Sbjct: 353 DMEYS 357


>gi|121729738|ref|ZP_01682178.1| alanine racemase, biosynthetic [Vibrio cholerae V52]
 gi|147674692|ref|YP_001218641.1| alanine racemase [Vibrio cholerae O395]
 gi|121628523|gb|EAX61007.1| alanine racemase, biosynthetic [Vibrio cholerae V52]
 gi|146316575|gb|ABQ21114.1| alanine racemase, biosynthetic [Vibrio cholerae O395]
 gi|227012228|gb|ACP08438.1| alanine racemase, biosynthetic [Vibrio cholerae O395]
          Length = 375

 Score =  419 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 176/374 (47%), Gaps = 20/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F
Sbjct: 12  MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 70  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 128

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF         + +    +SH  CAD+        Q
Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCDNVAKPLRYMSHFGCADELDKSTTVEQ 188

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V
Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y
Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356

Query: 356 DLLVRIGTRYAKFY 369
           +L+ ++ +R    Y
Sbjct: 357 ELVTKLTSRVEMSY 370


>gi|167746566|ref|ZP_02418693.1| hypothetical protein ANACAC_01276 [Anaerostipes caccae DSM 14662]
 gi|167653526|gb|EDR97655.1| hypothetical protein ANACAC_01276 [Anaerostipes caccae DSM 14662]
          Length = 388

 Score =  419 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 103/384 (26%), Positives = 164/384 (42%), Gaps = 26/384 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+    +   IDL A+ +N   +  L   + +   V+K + YG G   +A AL   GV  
Sbjct: 1   MNQYYRVYAAIDLDAVCHNISEIKKLVGPDTKIMPVIKADGYGHGAVPVAKALNKIGVDG 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V  +EEG+ LR       I +L      Q   +    +   + S       SK     
Sbjct: 61  FAVAIIEEGIALRKQGITKPILILGYTSEYQYASLIQHEIEQTVFSYEMAEAISKFAVTM 120

Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  ++VDTG NR+G    +E++            ++  I +H ACAD+        
Sbjct: 121 KKEARIHIKVDTGMNRIGFKPTEESVGQVQRIQKLPNIKIQGIFTHFACADEEDKTSARY 180

Query: 178 QLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--- 229
           Q E F   +S    KGIE     +++S+ I+        + R GI  YG           
Sbjct: 181 QKELFDQFVSKIEEKGIEIPVKHVSNSAAIMDLRECRMDMVRSGIITYGLYPSEEVDKSA 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  ++  + +I +++   GE VSYG      R + IA   +GYADGYP  LS     
Sbjct: 241 IDLKPALSLISHVIHVKEVGPGEGVSYGSTFVTDRKTRIATIPVGYADGYPRALSSR--- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345
                   G+  I+G   PI+G+I MD  M D+TD   + V D + + G     +I +++
Sbjct: 298 --------GRVIIRGQYAPIIGRICMDQFMVDVTDIEGVSVMDRVTLVGTEGDKNISVEE 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A  +G+ NY+ +  IG R  + Y
Sbjct: 350 AADLAGSFNYEFVCGIGKRVPRVY 373


>gi|153840096|ref|ZP_01992763.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
 gi|149746306|gb|EDM57372.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
          Length = 361

 Score =  419 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 181/375 (48%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   +  +  IDL+AL++N   + A +  ++  AVVK N YG G   +A          F
Sbjct: 1   MSYMKAAKACIDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHA--NHADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQA-DLE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++  +F         + +    +SH  CAD+  S +   Q
Sbjct: 118 TPVVVWLKIDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
           +E F +L S  +G E SLA+S+G+L  P    +  RPGI +YG +    K  +    Q V
Sbjct: 178 IELFMSLTSGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+   GE V YGG     RD+ + V A+GY DGYP +             
Sbjct: 237 MTLKSHLIAVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y
Sbjct: 287 -GTPVWVNGRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAY 345

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++  R    YT
Sbjct: 346 ELVTKLTPRVEMEYT 360


>gi|255747170|ref|ZP_05421113.1| alanine racemase biosynthetic [Vibrio cholera CIRS 101]
 gi|262147254|ref|ZP_06028055.1| alanine racemase biosynthetic [Vibrio cholerae INDRE 91/1]
 gi|255735219|gb|EET90621.1| alanine racemase biosynthetic [Vibrio cholera CIRS 101]
 gi|262031314|gb|EEY49927.1| alanine racemase biosynthetic [Vibrio cholerae INDRE 91/1]
 gi|327483230|gb|AEA77637.1| Alanine racemase, biosynthetic [Vibrio cholerae LMA3894-4]
          Length = 364

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 177/374 (47%), Gaps = 20/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F
Sbjct: 1   MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF       + + +    +SH  CAD+        Q
Sbjct: 118 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V
Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 237 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y
Sbjct: 287 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 345

Query: 356 DLLVRIGTRYAKFY 369
           +L+ ++ +R    Y
Sbjct: 346 ELVTKLTSRVEMSY 359


>gi|167036911|ref|YP_001664489.1| alanine racemase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039616|ref|YP_001662601.1| alanine racemase [Thermoanaerobacter sp. X514]
 gi|256751517|ref|ZP_05492394.1| alanine racemase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300915134|ref|ZP_07132449.1| alanine racemase [Thermoanaerobacter sp. X561]
 gi|307725058|ref|YP_003904809.1| alanine racemase [Thermoanaerobacter sp. X513]
 gi|320115330|ref|YP_004185489.1| alanine racemase [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853856|gb|ABY92265.1| alanine racemase [Thermoanaerobacter sp. X514]
 gi|166855745|gb|ABY94153.1| alanine racemase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749601|gb|EEU62628.1| alanine racemase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300888858|gb|EFK84005.1| alanine racemase [Thermoanaerobacter sp. X561]
 gi|307582119|gb|ADN55518.1| alanine racemase [Thermoanaerobacter sp. X513]
 gi|319928421|gb|ADV79106.1| alanine racemase [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 388

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 101/379 (26%), Positives = 161/379 (42%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R +I L  + +N   +    G   +   VVK NAYG G  ++A  L   GV    V 
Sbjct: 6   RPTRAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACQVAKVLIENGVSYLGVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
           ++EE ++LR       I V       Q K +   N+   +  +  +    ++  + G   
Sbjct: 66  TIEEALELRECGINIPILVFGYTPLPQAKELIVHNITQTVFDINYVKDLERIALNVGKKA 125

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++VDTG  R+G + L  A          +  ++  I SH A +D+        Q + 
Sbjct: 126 KVHVKVDTGMGRIGYTDLNVAEKEIEKMMEMEGVEVEGIFSHFATSDEKDKTYAEQQFDM 185

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQT 234
           F+ L+   K  E       +A+S  I+     +  + RPGI LYG     N   P  ++ 
Sbjct: 186 FKKLLESLKQKEINIPLKHIANSGAIIDLKYTYLDMVRPGIVLYGSYPSENVERPLDLRQ 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + +I+ I++   G  +SYG      R S IA   +GYADG+   LS          
Sbjct: 246 TMGFKTKIVYIKEVPEGTSISYGRTFITKRKSKIATLPVGYADGFNRLLSN--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  +KG   P++G+I MD TM D+TD   +EVGD + IFG      I  +++A   
Sbjct: 297 --NHHVLVKGKYAPVIGRICMDQTMLDVTDIEGVEVGDDVTIFGNQDGEKITAEEIAKKL 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++   I  R  + Y
Sbjct: 355 NTIPYEVYCGISRRVPRIY 373


>gi|261254033|ref|ZP_05946606.1| alanine racemase biosynthetic [Vibrio orientalis CIP 102891]
 gi|260937424|gb|EEX93413.1| alanine racemase biosynthetic [Vibrio orientalis CIP 102891]
          Length = 358

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 176/365 (48%), Gaps = 20/365 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + N++  AVVK N+YG G   IA      G   F V  +EE ++
Sbjct: 8   INLEALQHNLELIKQQAPNSKVMAVVKANSYGHGLRHIAKHAQ--GADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G +  G   ++   N+  V+    QL    +           L++D
Sbjct: 66  LRACGVVKPILLLEGFYSQGDLPVLVTNNIQTVVHCEEQLQALEQA-ELETPVVVWLKID 124

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLG+  ++  +F       + + +    +SH  CAD+      + Q E F +L   
Sbjct: 125 SGMHRLGVRPEQYSEFVTRLKACRNVAKPLRYMSHFGCADELDKSTTNQQTELFLSLTEG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILI 245
            +G E SLA+S+G+L  P+   +  RPGI +YG +   ++S      Q V+T ++ +I +
Sbjct: 185 CEG-ERSLAASAGLLAWPDSQLEWVRPGIIMYGVSPFNDRSAQELGYQPVMTLKSHLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE V YGG     RD+ + V AIGY DGYP T              G    + G 
Sbjct: 244 RDVKAGESVGYGGMWTSQRDTKVGVIAIGYGDGYPRTAPN-----------GTPVLVNGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             PI G+++MDM   D+    S +VGD   ++G  +  ++VA   GT  Y+L+ ++ +R 
Sbjct: 293 KAPIAGRVSMDMLTVDLGPDASDKVGDEAILWGNQLPAEEVASHIGTIAYELVTKLTSRV 352

Query: 366 AKFYT 370
              Y+
Sbjct: 353 DMEYS 357


>gi|170758199|ref|YP_001785612.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405188|gb|ACA53599.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
          Length = 404

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 28/388 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    ++I+L  L +N   +  ++ +    +VVK +AYG G  +IA  L   G     V 
Sbjct: 5   SRPAWIEINLDNLIHNMKEIRRVARSKEIISVVKADAYGHGALEIASLLLENGANRLAVA 64

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE--------KIIFDTNLIPVISSVPQLTFYS-K 114
            + E ++LR     A I +L       +        + I   +L   +SS       S K
Sbjct: 65  VLSEALELRNNGITAPIIILGYTPLRYDEKTICNNAETIIKNDLEVSVSSYKYAEQLSKK 124

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               G      + +DTG  RLG    +E L+  +            + SH + AD+ +  
Sbjct: 125 AQQLGKDVKIHVNIDTGMGRLGFLPTEENLEKIYQISKLPNIIFEGLFSHFSTADEKNKD 184

Query: 174 VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227
             + Q ++F       +          +A+S+ ++  P  H    RPGI+ YG       
Sbjct: 185 YTNEQFKKFLDFYYKLRDKNVKVNIKHIANSAALIDLPYTHLDAVRPGIAQYGYYPSSEV 244

Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             K   ++ ++T +  I+L++   +G+ +SYG + +  R+S IAV  IGYADGY   LS 
Sbjct: 245 NHKDINLRPIMTLKTNIVLVKDIKSGQSISYGRKFRTIRNSKIAVLPIGYADGYERELSN 304

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDI 341
            ++          +  + G   PI+G+ITMDM M D+TD   ++VGD + + G      I
Sbjct: 305 ENN------VYKAQVIVNGRRAPIVGRITMDMCMIDVTDIGDVKVGDEVILIGECNDERI 358

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            ++D+A    T  Y++  RI  R  ++Y
Sbjct: 359 SVEDIADLLNTIPYEVTSRISKRIPRYY 386


>gi|304437288|ref|ZP_07397248.1| alanine racemase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369780|gb|EFM23445.1| alanine racemase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 368

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 101/376 (26%), Positives = 169/376 (44%), Gaps = 22/376 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N     +IDL AL +N+  + +     A+  AVVK +AYG G    A    + G     V
Sbjct: 3   NRAAWAEIDLGALAHNYREIRSRIQKGAKLCAVVKADAYGHGAIAAARVALDEGADYLAV 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVS 121
            ++ E +KLR     A + +L  + P   + + D ++   +  +  +   S + +  G +
Sbjct: 63  ATLSEALKLRAAGFTAPLLILGLVEPESAREVVDGDITQTVCRMDLVEALSQEAVRQGKT 122

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L ++TG  R+G+  ++A +           +L  + SH A AD P       Q++ 
Sbjct: 123 VKVHLTIETGMGRIGVHPKDAAETAKKIAALPNVELEGVFSHFALADIPDKTFTKQQVKL 182

Query: 182 FRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
           F+      +  GI      +A S+ IL  P+ HF + R GI  YG       + P+  + 
Sbjct: 183 FKDACDAIEAAGIHIPIKHIAESAAILEIPDVHFDMVRAGIIQYGLWPSDEVTCPIDLRP 242

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   ARI+ I+    GE V YG +    R++ IA   +GYADGY               
Sbjct: 243 CMKFCARIVYIKTIQPGESVGYGRKFIAERETRIATLPVGYADGYIRA------------ 290

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTT 353
           + GG   + G   PI G++ MD  M D+TD    ++GD   +FG D +  D++A  + T 
Sbjct: 291 YAGGSVEVCGKRAPIAGRVCMDQFMIDVTDIPEAKLGDVCTLFGSDSLTADEIAGWANTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLVSERVPRVY 366


>gi|262166870|ref|ZP_06034592.1| alanine racemase biosynthetic [Vibrio cholerae RC27]
 gi|262024700|gb|EEY43379.1| alanine racemase biosynthetic [Vibrio cholerae RC27]
          Length = 364

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 176/374 (47%), Gaps = 20/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F
Sbjct: 1   MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF         + +    +SH  CAD+        Q
Sbjct: 118 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCDNVAKPLRYMSHFGCADELDKSTTVEQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V
Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 237 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y
Sbjct: 287 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 345

Query: 356 DLLVRIGTRYAKFY 369
           +L+ ++ +R    Y
Sbjct: 346 ELVTKLTSRVEMSY 359


>gi|303242638|ref|ZP_07329113.1| alanine racemase [Acetivibrio cellulolyticus CD2]
 gi|302589846|gb|EFL59619.1| alanine racemase [Acetivibrio cellulolyticus CD2]
          Length = 389

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 100/380 (26%), Positives = 168/380 (44%), Gaps = 27/380 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +++L  + +N   +  ++   A    VVK +AYG G  ++A  L   GV    V+ 
Sbjct: 7   RAWAEVNLDNIAHNVKEIRRITDKKAEIMGVVKADAYGHGVMEVAKTLLENGVTRLAVSM 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           ++E ++LR       I +L    P + + I   ++   + S       S+       +  
Sbjct: 67  LDEAIQLRKNGIDVPILILSYTDPRRAEEIILNDVTQTVFSHDLAEALSEAAVRLDKNIK 126

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++D+G  R+G      A+             +  + +H A +D+       +Q ERF
Sbjct: 127 IHIKIDSGMTRVGFMPGYSAVKNVVKISKLPKIIIEGLFTHFASSDEIDRSYTYMQFERF 186

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            +++S    I        + +S+G++  P  H  + RPGI+LYG              + 
Sbjct: 187 MSIVSELNRIGIYIPVKHVCNSAGVIEFPEMHLNMVRPGIALYGMYPSEEVQKDRINLKP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +A IIL++       +SYG   K  R+S IA   IGYADGY   L+          
Sbjct: 247 AMTLKANIILVKDVETDTCISYGRIFKTQRESRIATLPIGYADGYTRLLTN--------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIF----GPDIKLDDVALA 349
              G+  + G  VPI+GKI MD  M D+TD    + VGD + +F    G +I ++D+A  
Sbjct: 298 --KGRVLVNGQSVPIVGKICMDQCMIDVTDVQGEVNVGDEVVLFGSQNGSEISIEDLASK 355

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY++   IG R  + Y
Sbjct: 356 IGTINYEIACIIGKRIPRVY 375


>gi|229519921|ref|ZP_04409352.1| alanine racemase biosynthetic [Vibrio cholerae TM 11079-80]
 gi|229343049|gb|EEO08036.1| alanine racemase biosynthetic [Vibrio cholerae TM 11079-80]
          Length = 375

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/374 (30%), Positives = 176/374 (47%), Gaps = 20/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F
Sbjct: 12  MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 70  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 128

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF       + + +    +SH  CAD+        Q
Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 188

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +  E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V
Sbjct: 189 TELFLSLTQGCQD-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y
Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356

Query: 356 DLLVRIGTRYAKFY 369
           +L+ ++ +R    Y
Sbjct: 357 ELVTKLTSRVEMSY 370


>gi|296132181|ref|YP_003639428.1| alanine racemase [Thermincola sp. JR]
 gi|296030759|gb|ADG81527.1| alanine racemase [Thermincola potens JR]
          Length = 391

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 93/380 (24%), Positives = 153/380 (40%), Gaps = 26/380 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +IDL A+ +N   +  ++   AR  AVVK NAYG G   ++      GV    V 
Sbjct: 22  RPAWAEIDLGAIAHNLREIRRITQPQARIMAVVKANAYGHGAVPVSQVALQNGVSYLGVA 81

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSH 122
            ++E ++LR     A I +L      Q +     N+   I ++    F S++        
Sbjct: 82  MLDEALELRRAGIDAPILILGYTPKEQAEEAVRHNVTQTIYTLEMARFVSEVGEKLRQRA 141

Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG  RLG     E ++            +  I +H A +D         Q + 
Sbjct: 142 KVHIKIDTGMTRLGFLPGAETVEKIKEIAALPGLSVEGIFTHFAVSDIRDKAFTRQQFKL 201

Query: 182 FRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQ 233
           F  + +    +G++      A++  I+  P  H  + R GISLYG             ++
Sbjct: 202 FTDMCAVLEREGVKIPIKHAANTGAIIDMPETHLDMVRLGISLYGLYPSPEVDRTKVSLK 261

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ +A I  +++   G  VSYG        ++IA   IGYADGY   LS         
Sbjct: 262 PALSLKAGISHLKEVPRGVTVSYGRTYTTQEKTMIATIPIGYADGYSRLLS--------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I+G   P+ G I MD  M D+     +   D + + G      I  D++A  
Sbjct: 313 --SKAHVLIRGTRAPVAGVICMDQFMVDVGHIPDVAATDEVVLIGRQGDDCISADELAQL 370

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  +  R  + Y
Sbjct: 371 LGTINYEIVCMLSERIPRVY 390


>gi|170759362|ref|YP_001788727.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406351|gb|ACA54762.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
          Length = 386

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 174/384 (45%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N   +  +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV  
Sbjct: 1   MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGSMEIAPTLLENGVSR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  + E ++LR+   +  I +L         ++ D ++   + S       SK+    
Sbjct: 61  LAVAVLSEAMELRMSGIKEPIMILGYTPCALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120

Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  + VDTG  R+G    +E+++  +        Q+  + SH + AD+        
Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIQIEGVFSHFSSADELDKDYTLY 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229
           Q+  +   I+  +          +A+S+ I+   + H    R GI +YG       +  +
Sbjct: 181 QMNNYNEFINKLEEKNIQVHIKHIANSAAIIDLESTHLDAVRAGIIMYGYYPSNYVLRNN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS     
Sbjct: 241 IKLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D
Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTSIENLKVGDVVTIMGEENGVSYTAED 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y+++  +  R  + Y
Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373


>gi|15893783|ref|NP_347132.1| alanine racemase [Clostridium acetobutylicum ATCC 824]
 gi|20137418|sp|Q97LR2|ALR1_CLOAB RecName: Full=Alanine racemase 1
 gi|15023352|gb|AAK78472.1|AE007563_12 Alanine racemase [Clostridium acetobutylicum ATCC 824]
 gi|325507906|gb|ADZ19542.1| alanine racemase [Clostridium acetobutylicum EA 2018]
          Length = 386

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 105/379 (27%), Positives = 166/379 (43%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL  +  N   +   S +     VVK +AYG G   +AP L   G     V  
Sbjct: 6   RPVWAEIDLDNIAYNMQQIRRCSKSDEIIGVVKADAYGHGAVDVAPVLLENGANRLAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHP 123
           + E V+LR    Q  I +L          I   ++   + S       S+      ++  
Sbjct: 66  ISEAVELRKSGIQCPIMILGYTPLSLVDSIIKYSIEQTVFSYDYAEKLSEAARQKNITLR 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    +E++   +         +  I SH + +D+ +      QL++F
Sbjct: 126 IHIALDTGMGRIGFLPTEESVWEVYKISKLSNIIIEGIFSHFSTSDETNKEYTYAQLKKF 185

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
               +  +          + +S+ I+  P  HF+ TRPGI LYG             ++ 
Sbjct: 186 EWFYNELRKKNIKINIRHIGNSAAIMELPETHFEATRPGIILYGYYPSNEVDKNKLNLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           ++T +  ++ I+K + GE VSYG + K  R+S+IA   +GYADGY   LSG         
Sbjct: 246 IMTLKTNVVHIKKMMPGEYVSYGRKFKCERESIIATLPVGYADGYTRMLSG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K  I G   P++G+I MD  M DITD  S++VGD + I G         DD+A   
Sbjct: 297 --KAKVIINGNYAPVIGRICMDQCMIDITDLPSVQVGDEVVIMGESDDKKFTADDMAEII 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++  I  R  + Y
Sbjct: 355 GTINYEVICMISKRVPRVY 373


>gi|331268600|ref|YP_004395092.1| alanine racemase [Clostridium botulinum BKT015925]
 gi|329125150|gb|AEB75095.1| alanine racemase [Clostridium botulinum BKT015925]
          Length = 387

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 103/380 (27%), Positives = 164/380 (43%), Gaps = 26/380 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I+L  L  N   +  +S +     +VK +AYG G   +AP L   G     V  
Sbjct: 6   RPVWAEINLDNLAFNVKEIKKISSSKEIIGIVKADAYGHGALDVAPTLIENGATGLAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHP 123
           + EGV+LR    +  I VL    P     +   ++   + S+      S +         
Sbjct: 66  INEGVELRRGGIECPIMVLGFTAPTLIDTLLRHDIEQTVFSLEYAKQLSGVAEKMHKKIK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG  R+G    +E++       N    ++  I +H + AD+ +      QL++F
Sbjct: 126 IHIAVDTGMGRIGFLPNKESVQDVKKISNLPNVEIKGIFTHFSTADESNKEYTYYQLKKF 185

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
                  K          +A+S+ I+      F+  RPGI LYG             ++ 
Sbjct: 186 NEFYDELKKENINIQTRHIANSAAIMELSETQFEGVRPGIILYGYYPSNQVDKSKLKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  +  I+ I+K  +G+ +SYG + K  R+S+IA   +GYADGY   L           
Sbjct: 246 VMELKTNIVHIKKISSGKYISYGRKFKTERESIIATLPVGYADGYTRLLFN--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD----IKLDDVALA 349
               K  I G   PI+G+I MD  M DITD    I++GD + + G +    I  DD+A  
Sbjct: 297 --KAKVIINGQFAPIIGRICMDQCMVDITDIKGDIKIGDEVILMGQENGIKIDADDIASM 354

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  I  R  + Y
Sbjct: 355 LGTINYEVVCMISKRVPRVY 374


>gi|326204287|ref|ZP_08194146.1| alanine racemase [Clostridium papyrosolvens DSM 2782]
 gi|325985562|gb|EGD46399.1| alanine racemase [Clostridium papyrosolvens DSM 2782]
          Length = 389

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 101/381 (26%), Positives = 170/381 (44%), Gaps = 27/381 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +I L  + +N   +  ++G NA    VVK +AYG G  ++A  L   G   F V+ 
Sbjct: 7   RAWAEISLDNIAHNIREIRRITGKNAEIMGVVKADAYGHGVMEVAKTLLENGASRFAVSM 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHP 123
           ++E ++LR    +  I +L    P +   I + ++   + S       S + +  G    
Sbjct: 67  LDEAIQLRREGIEVPILILGYTDPRRANEIIENDVTQSVFSHDLAQALSDEAVRQGKKVK 126

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++DTG +R+G      A+             +  + +H A AD+ +    + Q ERF
Sbjct: 127 IHIKIDTGMSRIGFLPGYSAVKNVVEISRLPNIIIEGLFTHFATADEKNREYTNTQFERF 186

Query: 183 RTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
            ++    + I   +     A+S+ I+  P  H  + RPGI LYG     +       ++ 
Sbjct: 187 MSICCELQRIGIHIPVKHCANSAAIIEYPEMHLDMVRPGIILYGMYPSDDVNKAKIDLKP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +A +I++++      +SYG      R S IA   IGYADG+   LS          
Sbjct: 247 AMTLKANVIMVKEVEKNTSISYGRIFTTGRTSKIATIPIGYADGFNRMLSN--------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD----IKLDDVALA 349
              GK  I G   P++G++ MD  M DITD   ++EVGD + + G      I  +DVA  
Sbjct: 298 --KGKVLINGEFAPVVGRVCMDQCMVDITDIGSNVEVGDEVVLIGAQGQNNITAEDVAQT 355

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
            G  NY+L+  +G R  + + 
Sbjct: 356 IGMINYELVCIVGKRIPRAFV 376


>gi|332798489|ref|YP_004459988.1| alanine racemase [Tepidanaerobacter sp. Re1]
 gi|332696224|gb|AEE90681.1| Alanine racemase [Tepidanaerobacter sp. Re1]
          Length = 393

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 97/381 (25%), Positives = 171/381 (44%), Gaps = 27/381 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +I+L  L++N   +  ++  NA+  A+VK + YG G  ++A    + G     V 
Sbjct: 9   RPTWAEINLDDLRHNLLEIRRITSTNAKLCAIVKADGYGHGAVEVAQTALSCGAHYLGVA 68

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
            ++E V+LR    +A I +L      Q   I + ++   + S+      S+  +      
Sbjct: 69  FLDEAVELREKGIKAPILILGFTPENQFDTIIEHDITQTVYSLKSAILLSEKALKRKKKA 128

Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG +R+G      ++      F  +  ++  I++H A AD+    V   Q   
Sbjct: 129 KVHIKLDTGMSRIGFQTDASSISDIRKLFQLEGLKVEGILTHFAKADEKDRTVTEEQFRI 188

Query: 182 FRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
           F   ++      YK     +A+S+GI+  PN H  + RPGI LYG             ++
Sbjct: 189 FTEAVNTIEAKDYKIPIKHIANSAGIIEYPNTHLDMVRPGIILYGMYPSDEITKSKIHLK 248

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +++ + R+  ++    G+ +SYGG     R ++IA   +GYADGY   LS         
Sbjct: 249 PILSLKTRVAHVKSLPKGKAISYGGTYITERHTIIATLPVGYADGYSRLLSSR------- 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD----IKLDDVAL 348
                +  I G   P++G+I MD  M D+TD    ++  D + + G D    I+ +D+A 
Sbjct: 302 ----AQVLINGQRAPVVGRICMDQCMVDVTDIQGEVKPKDEVTLIGADGSERIEAEDIAK 357

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY++   I  R  + Y
Sbjct: 358 IIGTINYEITCGISKRVPRVY 378


>gi|148381338|ref|YP_001255879.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|153933765|ref|YP_001385715.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|153935067|ref|YP_001389121.1| alanine racemase [Clostridium botulinum A str. Hall]
 gi|148290822|emb|CAL84957.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|152929809|gb|ABS35309.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|152930981|gb|ABS36480.1| alanine racemase [Clostridium botulinum A str. Hall]
          Length = 386

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 175/384 (45%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N   +  +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV  
Sbjct: 1   MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  + E ++LR+   +  I +L         ++ D ++   + S       SK+    
Sbjct: 61  LAVAVLSEAMELRMSGVKEPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120

Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  + VDTG  R+G    +E+++  +        ++  I SH + AD+        
Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIEIEGIFSHFSSADESDKDYTLY 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229
           Q+ ++   I+  +          +A+S+ I+   N H    R GI +YG       +  +
Sbjct: 181 QMNKYNAFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRNN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS     
Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTKRESIIATLPIGYADGYNRLLSN---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D
Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAED 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y+++  +  R  + Y
Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373


>gi|262190632|ref|ZP_06048868.1| alanine racemase biosynthetic [Vibrio cholerae CT 5369-93]
 gi|20137519|sp|Q9KUY6|ALR1_VIBCH RecName: Full=Alanine racemase 1
 gi|262033497|gb|EEY51999.1| alanine racemase biosynthetic [Vibrio cholerae CT 5369-93]
          Length = 361

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 174/364 (47%), Gaps = 20/364 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F V  +EE ++
Sbjct: 8   INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G + PG   ++   N+  V+    QL    +           L+VD
Sbjct: 66  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LETPVMVWLKVD 124

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLG+  ++  DF       + + +    +SH  CAD+        Q E F +L   
Sbjct: 125 SGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQTELFLSLTQG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILI 245
            +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V+T ++ +I +
Sbjct: 185 CQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSHLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AGE V YGG     RD+ I V AIGY DGYP T              G    + G 
Sbjct: 244 REVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN-----------GTPVVVNGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ ++ +R 
Sbjct: 293 RVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKLTSRV 352

Query: 366 AKFY 369
              Y
Sbjct: 353 EMSY 356


>gi|78042901|ref|YP_359522.1| alanine racemase [Carboxydothermus hydrogenoformans Z-2901]
 gi|85681910|sp|Q9F8I0|ALR_CARHZ RecName: Full=Alanine racemase
 gi|77995016|gb|ABB13915.1| alanine racemase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 368

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 107/379 (28%), Positives = 174/379 (45%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +++L  +++N+  +  L+  A    V+K NAYG G  ++A AL   G + F V  
Sbjct: 2   RPVWAEVNLENIRHNFREVKRLARQAEAMPVIKANAYGHGAVEVAKALIAEGAKRFAVAI 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123
           ++EG+KLR     A + +L    P + + +   NL P +        Y  +L     +  
Sbjct: 62  LDEGIKLREAGIDAPVLILGYTPPEEVEKLLFYNLTPTLHHRELALAYQERLERLKKTLF 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           Y L++DTG  R+G   +E L+        K  +   + +H A AD+     + +Q+ERF 
Sbjct: 122 YHLKIDTGMGRIGFWYEE-LEKIEEVLKLKNLEAEGVYTHFARADEQDLSFSKLQIERFN 180

Query: 184 TLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTV 235
            ++ H   KGIE      A+S+ I+  P  H+ L RPGI LYG         +   ++  
Sbjct: 181 IVLKHLKAKGIEVKYRHAANSAAIMRLPEAHYDLVRPGIMLYGEYPSRDVPRELAHLKPA 240

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +AR+  ++K  AG  VSYG     ++ +LI    +GYADGY   LS           
Sbjct: 241 LTLKARVSQVKKVPAGFTVSYGSTYVTSKATLIVSLPLGYADGYFRRLSNR--------- 291

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
             G   I G    I G++ MD  M  + ++  +  GD   + G      I   ++A   G
Sbjct: 292 --GVVLINGKRWSIAGRVCMDQLMVAVDETERVNPGDEAVLLGKQGEETITAMEMADLVG 349

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T NY++L  I  R  + Y 
Sbjct: 350 TINYEILTNISYRVPRIYV 368


>gi|308094758|ref|ZP_05891769.2| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|308095056|ref|ZP_07663149.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|308125857|ref|ZP_07663541.1| alanine racemase [Vibrio parahaemolyticus K5030]
 gi|308126480|ref|ZP_05910422.2| alanine racemase [Vibrio parahaemolyticus AQ4037]
 gi|308087451|gb|EFO37146.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|308089684|gb|EFO39379.1| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|308109426|gb|EFO46966.1| alanine racemase [Vibrio parahaemolyticus AQ4037]
 gi|308113312|gb|EFO50852.1| alanine racemase [Vibrio parahaemolyticus K5030]
          Length = 361

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 181/375 (48%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   +  +  IDL+AL++N   + A +  ++  AVVK N YG G   +A          F
Sbjct: 1   MSYMKAAKACIDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHA--NHADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQA-DLE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++  +F         + +    +SH  CAD+  S +   Q
Sbjct: 118 TPVVVWLKIDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
           +E F +L S  +G E SLA+S+G+L  P    +  RPGI +YG +    K  +    Q V
Sbjct: 178 IELFMSLTSGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+   GE V YGG     RD+ + V A+GY DGYP +             
Sbjct: 237 MTLKSHLIAVREVKQGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y
Sbjct: 287 -GTPVWVNGRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAY 345

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++  R    YT
Sbjct: 346 ELVTKLTPRVEMEYT 360


>gi|328472359|gb|EGF43229.1| alanine racemase [Vibrio parahaemolyticus 10329]
          Length = 358

 Score =  417 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/369 (29%), Positives = 179/369 (48%), Gaps = 20/369 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +  IDL+AL++N   + A +  ++  AVVK N YG G   +A          F V  +E
Sbjct: 4   AKACIDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHA--NHADAFGVARIE 61

Query: 67  EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR       I +L G + PG   ++   N+  V+    QL    +           
Sbjct: 62  EALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQA-DLETPVVVW 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++D+G +RLG+  ++  +F         + +    +SH  CAD+  S +   Q+E F +
Sbjct: 121 LKIDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQIELFMS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEAR 241
           L S  +G E SLA+S+G+L  P    +  RPGI +YG +    K  +    Q V+T ++ 
Sbjct: 181 LTSGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPVMTLKSH 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+   GE V YGG     RD+ + V A+GY DGYP +              G   +
Sbjct: 240 LIAVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN-----------GTPVW 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 289 VNGRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAYELVTKL 348

Query: 362 GTRYAKFYT 370
             R    YT
Sbjct: 349 TPRVEMEYT 357


>gi|168181951|ref|ZP_02616615.1| alanine racemase [Clostridium botulinum Bf]
 gi|237796857|ref|YP_002864409.1| alanine racemase [Clostridium botulinum Ba4 str. 657]
 gi|182674830|gb|EDT86791.1| alanine racemase [Clostridium botulinum Bf]
 gi|229261016|gb|ACQ52049.1| alanine racemase [Clostridium botulinum Ba4 str. 657]
          Length = 386

 Score =  417 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 175/384 (45%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N   +  +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV  
Sbjct: 1   MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  + E ++LR+   +  I +L         ++ D ++   + S       SK+    
Sbjct: 61  LAVAVLSEAMELRMSGVKNPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120

Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  + VDTG  R+G    +E+++  +        ++  + SH + AD+        
Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIEIEGVFSHFSSADELDKDYTLY 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229
           Q+ ++   I+  +          +A+S+ I+   N H    R GI +YG       +  +
Sbjct: 181 QMNKYNEFINKLEEKNIQLPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRNN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS     
Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTKRESIIATLPIGYADGYNRLLSN---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D
Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAED 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y+++  +  R  + Y
Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373


>gi|323706388|ref|ZP_08117952.1| alanine racemase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534282|gb|EGB24069.1| alanine racemase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 388

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 163/379 (43%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +++L  + +N+  +  ++  NA   AVVK NAYG G  +++  L N GV    V 
Sbjct: 6   RPTWAEVNLDNIIHNYKEIRKITDKNAGIMAVVKANAYGHGSYEVSKELINCGVDYLAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           +++E ++LR       I +L         +I   ++      +  +   +K     G   
Sbjct: 66  TIDEALELREQGISKPILILGYTPAKFADVIVKHDITQTAFELSYVKEVAKVAQKLGKDA 125

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG  R+G   + +A +      N     +  I SH + +D+        QLE 
Sbjct: 126 KIHVKIDTGMGRIGYNDMNKAYEEILTMSNLAGINIEGIFSHFSSSDEKDKEYTLRQLEI 185

Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F  LI   K          +A+S+ IL  P  H  + RPGI LYG     ++NK   +  
Sbjct: 186 FLNLIERLKKSGLYIPIRHIANSAAILDMPETHLDMVRPGIILYGSFPSSEVNKKIDLLP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  ++++ ++    GE +SY    +  R S IA   IGYADG    LS   +      
Sbjct: 246 TISLRSKVVYVKDVGEGEYISYNRTYRTNRKSRIATLPIGYADGLNRLLSNNHN------ 299

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  I G   PI+GKI MD  M D+T+   ++ GD   I G      I  D++A   
Sbjct: 300 -----VIINGKYAPIVGKICMDQCMVDVTEIEDVKEGDVATIMGEADGKFISADEIANKL 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++   I  R  + Y
Sbjct: 355 KTISYEVYCGISRRVPRIY 373


>gi|148378278|ref|YP_001252819.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|153930927|ref|YP_001382679.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|153935439|ref|YP_001386230.1| alanine racemase [Clostridium botulinum A str. Hall]
 gi|148287762|emb|CAL81828.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|152926971|gb|ABS32471.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|152931353|gb|ABS36852.1| alanine racemase [Clostridium botulinum A str. Hall]
          Length = 404

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 28/388 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    ++I+L  L +N   +  ++ +    +VVK +AYG G  +IA  L   G     V 
Sbjct: 5   SRPAWIEINLDNLIHNMKEIRRVARSKEIISVVKADAYGHGALEIASLLLENGANRLAVA 64

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE--------KIIFDTNLIPVISSVPQLTFYS-K 114
            + E ++LR     A I +L       +        + I   +L   +SS       S K
Sbjct: 65  VLSEALELRNSGITAPIIILGYTPLRYDERTICNNAETIIKNDLEVSVSSYKYAEQLSKK 124

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               G      + +DTG  RLG    +E L+  +            + SH + AD+ +  
Sbjct: 125 AQQLGKDVKIHVNIDTGMGRLGFLPTEENLEKIYQISKLPNIIFEGLFSHFSTADEKNKE 184

Query: 174 VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227
             + Q ++F       +          +A+S+ ++  P  H    RPGI+ YG       
Sbjct: 185 YTNEQFKKFLDFYYKLRDKNVKVNIKHIANSAALIDLPYTHLDAVRPGIAQYGYYPSSEV 244

Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             K   ++ ++T +  I+L++   +G+ +SYG + +  R+S IAV  IGYADGY   LS 
Sbjct: 245 NHKDINLRPIMTLKTNIVLVKDIKSGQSISYGRKFRTIRNSKIAVLPIGYADGYERELSN 304

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDI 341
            ++          +  + G   PI+G+ITMDM M D+TD   ++VGD + + G      I
Sbjct: 305 ENN------VYKAQVIVNGRRAPIVGRITMDMCMIDVTDIGDVKVGDEVILIGECNDERI 358

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            ++D+A    T  Y++  RI  R  ++Y
Sbjct: 359 SVEDIANLLNTIPYEVTSRISKRIPRYY 386


>gi|167766635|ref|ZP_02438688.1| hypothetical protein CLOSS21_01141 [Clostridium sp. SS2/1]
 gi|167711758|gb|EDS22337.1| hypothetical protein CLOSS21_01141 [Clostridium sp. SS2/1]
 gi|291558653|emb|CBL37453.1| alanine racemase [butyrate-producing bacterium SSC/2]
          Length = 387

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 168/384 (43%), Gaps = 26/384 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+    +   IDL A+ +N   +  + G   +   V+K + YG G   IA  L   GV  
Sbjct: 1   MNQYYRVHAVIDLDAICHNIREVKRVVGEGVKVMPVIKADGYGHGAVPIAKELNKIGVDA 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
           F V  +EEG+ LR    +  I +L      Q   +    + P +         SK+    
Sbjct: 61  FAVAILEEGITLRNNGIRQPILILGYTSEYQYSSLIQYEIEPTVFCYEMAESLSKIAQAL 120

Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      +++DTG NR+G    +E++D           ++  I +H ACAD+        
Sbjct: 121 GKDAKIHIKLDTGMNRIGFKPTKESVDIIEKIAKLPNIKIQGIFTHFACADEADKTETYE 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q  ++   I+  +  +       +++S+ I+    +   + R GI  YG       S  +
Sbjct: 181 QERKYDQFITWLEERDIYIPIKHVSNSASIIDLDGFRKDMVRSGIITYGLYPSEEVSKDV 240

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  +  +  I+ I++  AGE +SY       + + IA   +GYADGYP +LS     
Sbjct: 241 LDLRPAMELKTHIVYIKEVEAGEGISYNHTYVTDKKTKIATIPVGYADGYPRSLS----- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  I+G   PI+G+I MD  M D+TD   + V D + + G D    + +++
Sbjct: 296 ------SKGKVLIRGQYAPIIGRICMDQFMVDVTDVEGVSVMDEVTLVGHDGNKMLTVEE 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA  +G+ NY+ +  IG R  + Y
Sbjct: 350 VANEAGSFNYEFVCGIGKRVPRVY 373


>gi|226950848|ref|YP_002805939.1| alanine racemase [Clostridium botulinum A2 str. Kyoto]
 gi|226841311|gb|ACO83977.1| alanine racemase [Clostridium botulinum A2 str. Kyoto]
          Length = 386

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 176/384 (45%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N   +  +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV  
Sbjct: 1   MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  + E ++LR+   +  I +L         ++ D ++   + S       SK+    
Sbjct: 61  LAVAVLSEAMELRMSGVKEPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120

Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  + VDTG  R+G    +E+++  +        ++  + SH + AD+        
Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIEIEGVFSHFSSADESDKDYTLY 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229
           Q+ ++   I+  +          +A+S+ I+   N H    R GI +YG       +  +
Sbjct: 181 QMNKYNAFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRNN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +  I+ I+K  +GE +SYGG  K  R+S+IA   IGYADGY   LS     
Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGGTFKTKRESIIATLPIGYADGYNRLLSN---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D
Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAED 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y+++  +  R  + Y
Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373


>gi|168178920|ref|ZP_02613584.1| alanine racemase [Clostridium botulinum NCTC 2916]
 gi|182669985|gb|EDT81961.1| alanine racemase [Clostridium botulinum NCTC 2916]
          Length = 386

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 175/384 (45%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N   +  +IDL +L++N   +  + GN     V+K NAYG G  +IAP L   GV  
Sbjct: 1   MFRNLRAVWAEIDLDSLQHNLKQIKKICGNKEIIGVIKANAYGHGSMEIAPTLLENGVSR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  + E ++LR+   +  I +L         ++ D ++   + S       SK+    
Sbjct: 61  LAVAVLSEAMELRMSGIKEPIMILGYTPCALGDMLLDNDIEQSVYSYNDALELSKIALLK 120

Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  + VDTG  R+G    +E+++  +        Q+  + SH + AD+        
Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIQIEGVFSHFSSADELDKDYTLY 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229
           Q+  +   I+  +          +A+S+ I+   + H    R GI +YG       +  +
Sbjct: 181 QMNNYNEFINKLEEKNIQVHIKHIANSAAIIDLESTHLDAVRAGIIMYGYYPSNYVLRNN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS     
Sbjct: 241 IKLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D
Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTSIENLKVGDVVTIMGQENGVSYTAED 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y+++  +  R  + Y
Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373


>gi|317499467|ref|ZP_07957733.1| alanine racemase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893241|gb|EFV15457.1| alanine racemase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 387

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 168/384 (43%), Gaps = 26/384 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+    +   IDL A+ +N   +  + G   +   V+K + YG G   IA  L   GV  
Sbjct: 1   MNQYYRVHAVIDLDAICHNIREVKRVVGEGVKVMPVIKADGYGHGAVPIAKELNKIGVDA 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
           F V  +EEG+ LR    +  I +L      Q   +    + P +         SK+    
Sbjct: 61  FAVAILEEGITLRNNGIRQPILILGYTSEYQYSSLIQYEIEPTVFCYEMAESLSKIAQAL 120

Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      +++DTG NR+G    +E++D           ++  I +H ACAD+        
Sbjct: 121 GKDAKIHIKLDTGMNRIGFKPTKESVDIIEKIAKLPNIKIQGIFTHFACADEADKTETYE 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q  ++   I+  +  +       +++S+ I+    +   + R GI  YG       S  +
Sbjct: 181 QERKYDQFITWLEERDIYIPIKHVSNSASIIDLDGFRKDMVRSGIITYGLYPSEEVSKDV 240

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  +  +  I+ I++  AGE +SY       + + IA   +GYADGYP +LS     
Sbjct: 241 LDLRPAMELKTHIVYIKEVEAGEGISYNHTYVTDKKTKIATIPVGYADGYPRSLS----- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  I+G   PI+G+I MD  M D+TD   + V D + + G D    + +++
Sbjct: 296 ------SKGKVLIRGQYAPIIGRICMDQFMVDVTDIEGVSVMDEVTLVGHDGNKMLTVEE 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA  +G+ NY+ +  IG R  + Y
Sbjct: 350 VANEAGSFNYEFVCGIGKRVPRVY 373


>gi|323496058|ref|ZP_08101118.1| alanine racemase [Vibrio sinaloensis DSM 21326]
 gi|323318802|gb|EGA71753.1| alanine racemase [Vibrio sinaloensis DSM 21326]
          Length = 359

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 110/364 (30%), Positives = 177/364 (48%), Gaps = 20/364 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + N++  AVVK N+YG G   IA  ++  G   F V  +EE ++
Sbjct: 8   INLDALEHNLEQIKRQAPNSKVMAVVKANSYGHGLRHIA--VHAHGADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G + PG   ++   N+  V+    QL    +           L+VD
Sbjct: 66  LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLAALEQA-ELETPVVVWLKVD 124

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLG+  ++   F       + + +    +SH  CAD+ +    + Q E F +L   
Sbjct: 125 SGMHRLGVRPEQYNAFVSRLKACRNVAKPLRYMSHFGCADELNKPTTNEQTELFLSLTQG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILI 245
            +G E SLA+S+G+L  P       RPGI +YG +   +K+        V+T ++ +I +
Sbjct: 185 CEG-ERSLAASAGLLAWPESQLDWVRPGIIMYGVSPFNDKTALQMGYLPVMTLKSHLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE V YGG     +D+ I V AIGY DGYP T              G   ++ G 
Sbjct: 244 RDVKAGESVGYGGTWTCEQDTKIGVIAIGYGDGYPRTAPN-----------GTPVWVNGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             PI G+++MDM   D+    +  VGD   ++G D+ +++VA   GT  Y+L+ ++ +R 
Sbjct: 293 KAPIAGRVSMDMLTVDLGPGATDRVGDEAILWGNDLPVEEVAGHIGTIAYELVTKLTSRV 352

Query: 366 AKFY 369
              Y
Sbjct: 353 EMEY 356


>gi|258622401|ref|ZP_05717424.1| alanine racemase [Vibrio mimicus VM573]
 gi|258585315|gb|EEW10041.1| alanine racemase [Vibrio mimicus VM573]
          Length = 375

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 179/375 (47%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   + +++  AVVK N YG G   IA      G   F
Sbjct: 12  MNYMKAATAYINLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIARYAI--GADAF 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 70  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 128

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF +       + +    +SH  CAD+        Q
Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYRDFVNRLHQCANVAKPLRYMSHFGCADELDKSTTEEQ 188

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V
Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+    +  VGD   ++G ++ +++VA   GT  Y
Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGY 356

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++ +R    Y+
Sbjct: 357 ELVTKLTSRVEMSYS 371


>gi|220903457|ref|YP_002478769.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|259710065|sp|B8J2K3|ALR_DESDA RecName: Full=Alanine racemase
 gi|219867756|gb|ACL48091.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 371

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 99/377 (26%), Positives = 164/377 (43%), Gaps = 21/377 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +  +  +IDL+A ++N   + +L         ++K + YG G   +A      G     V
Sbjct: 5   DRPVWAEIDLSAFRHNMRQIKSLLQPGTIFCPIIKADGYGHGAVPLAHEAVAMGAGYLGV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121
             ++E   LR       I +L    P     +   ++   I S  Q    S    + G++
Sbjct: 65  AILDEAAALRAAGITLPILILGYTPPQAAAFVVSNHITQTIFSKEQADALSAAASNLGIT 124

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++VDTG  R+G+  +EA  F       +   L  + +H A +D         Q  R
Sbjct: 125 VKVHVKVDTGMTRIGVRPEEAAAFCSYVAGLENVHLEGMFTHFASSDSADHAYCLEQFGR 184

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
           F   I+  +  GI       A+S+ IL  P  H  + R GI LYG         P+  + 
Sbjct: 185 FTAAIAAVEASGIRLGIRHCANSAAILSLPEGHLDMVRAGIILYGLKPSDECPMPIDLRP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  +AR+ ++++   G  VSYG      ++S +A   IGYADGY   LS          
Sbjct: 245 VMRLKARLAMVKQVPPGVGVSYGSIYHTQKESSLATIPIGYADGYTRMLS---------- 294

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALASGTT 353
               +  ++G   P++G+I MD  M D++      VGD + +F GPD+  D++A   GT 
Sbjct: 295 -RKAQVLLRGQRAPVVGRICMDQCMVDVSHVPQAAVGDEVLLFGGPDLPADEIAAHLGTI 353

Query: 354 NYDLLVRIGTRYAKFYT 370
           NY+++  +G R  + Y 
Sbjct: 354 NYEVVCMVGKRVPRVYV 370


>gi|28899508|ref|NP_799113.1| alanine racemase [Vibrio parahaemolyticus RIMD 2210633]
 gi|34098474|sp|Q87L78|ALR1_VIBPA RecName: Full=Alanine racemase 1
 gi|28807744|dbj|BAC60997.1| alanine racemase, biosynthetic [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 358

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/369 (29%), Positives = 179/369 (48%), Gaps = 20/369 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +  IDL+AL++N   + A +  ++  AVVK N YG G   +A          F V  +E
Sbjct: 4   AKACIDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHA--NHADAFGVARIE 61

Query: 67  EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E ++LR       I +L G + PG   ++   N+  V+    QL    +           
Sbjct: 62  EALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQA-DLETPVVVW 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++D+G +RLG+  ++  +F         + +    +SH  CAD+  S +   Q+E F +
Sbjct: 121 LKIDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQIELFMS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEAR 241
           L S  +G E SLA+S+G+L  P    +  RPGI +YG +    K  +    Q V+T ++ 
Sbjct: 181 LTSGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPVMTLKSH 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+   GE V YGG     RD+ + V A+GY DGYP +              G   +
Sbjct: 240 LIAVREVKQGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN-----------GTPVW 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+    + +V D   ++G ++ +++VA   GT  Y+L+ ++
Sbjct: 289 VNGRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAYELVTKL 348

Query: 362 GTRYAKFYT 370
             R    YT
Sbjct: 349 TPRVEMEYT 357


>gi|170757299|ref|YP_001779928.1| alanine racemase [Clostridium botulinum B1 str. Okra]
 gi|169122511|gb|ACA46347.1| alanine racemase [Clostridium botulinum B1 str. Okra]
          Length = 404

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 171/388 (44%), Gaps = 28/388 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    ++I+L  L +N   +  ++ +    +VVK +AYG G  +IA  L   G     V 
Sbjct: 5   SRPAWIEINLDNLIHNMKEIRRVARSKEIISVVKADAYGHGALEIASLLLENGANRLAVA 64

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE--------KIIFDTNLIPVISSVPQLTFYS-K 114
            + E ++LR     A I +L       +        + I   +L   +SS       S K
Sbjct: 65  VLSEALELRNSGITAPIIILGYTPLRYDERTICNNAETIIKNDLEVSVSSYKYAEQLSKK 124

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               G      + +DTG  RLG    +E L+  +            + SH +  D+ +  
Sbjct: 125 AQQLGKDVKIHVNIDTGMGRLGFLPTEENLEKIYQISKLPNIIFEGLFSHFSTVDEKNKD 184

Query: 174 VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227
             + Q ++F       +          +A+S+ ++  P  H    RPGI+ YG       
Sbjct: 185 YTNEQFKKFLDFYYKLRDKNVKVNIKHIANSAALIDLPYTHLDAVRPGIAQYGYYPSSEV 244

Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             K   ++ ++T +  I+L++   +G+ +SYG + +  R+S IAV  IGYADGY   LS 
Sbjct: 245 NHKDINLRPIMTLKTNIVLVKDIKSGQSISYGRKFRTIRNSKIAVLPIGYADGYERELSN 304

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDI 341
            ++          +  + G   PI+G+ITMDM M D+TD   ++VGD + + G      I
Sbjct: 305 ENN------VYKAQVIVNGRRAPIVGRITMDMCMIDVTDIGDVKVGDEVILIGECNDERI 358

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            ++D+A    T  Y++  RI  R  ++Y
Sbjct: 359 SVEDIADLLNTIPYEVTSRISKRIPRYY 386


>gi|326390394|ref|ZP_08211952.1| alanine racemase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993512|gb|EGD51946.1| alanine racemase [Thermoanaerobacter ethanolicus JW 200]
          Length = 384

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 164/379 (43%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R +I L  + +N   +    G   +   VVK NAYG G  ++A  L   GV    V 
Sbjct: 6   RPTRAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACQVAKVLIENGVSYLAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
           ++EE ++LR       I V+      Q K +   N+   +  +  +    ++  + G   
Sbjct: 66  TIEEALELRECGINIPILVIGYTPLTQAKELIVHNITQTVFDINYVKDLERIALNVGKKA 125

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG  R+G + L+ A          +  ++  I SH A +D+ +      Q + 
Sbjct: 126 KVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKNKTYAEKQFDV 185

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F+ L+   K          +A+S  I+     +  + RPGI LYG     ++ +   ++ 
Sbjct: 186 FKKLLERLKEKRINIPLKHIANSGAIIDLKYTYLDMVRPGIVLYGSYPSEEVERPLDLKQ 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + +I+ I++   G  +SYG      R S IA   +GYADG+   LS          
Sbjct: 246 TMGFKTKIVHIKEVPEGTSISYGRTFITKRKSKIATLPVGYADGFNRLLSN--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  +KG   P++G+I MD TM D+TD   +E+GD + IFG      I  D++A   
Sbjct: 297 --NHHVLVKGKYAPVIGRICMDQTMIDVTDIEGVELGDDVVIFGNQEGEKITADEIAKKL 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++   I  R  + Y
Sbjct: 355 NTIPYEVYCGISRRVPRIY 373


>gi|262172532|ref|ZP_06040210.1| alanine racemase biosynthetic [Vibrio mimicus MB-451]
 gi|261893608|gb|EEY39594.1| alanine racemase biosynthetic [Vibrio mimicus MB-451]
          Length = 364

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 180/375 (48%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   + +++  AVVK N YG G   IA      G   F
Sbjct: 1   MNYMKAATAYINLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIARYAI--GADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF +       + +    +SH  CAD+      + Q
Sbjct: 118 TPVMVWLKVDSGMHRLGVRPEQYRDFVNRLHQCANVAKPLRYMSHFGCADELDKSTTAEQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V
Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 237 MTLKSHVIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+    +  VGD   ++G ++ +++VA   GT  Y
Sbjct: 287 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGY 345

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++ +R    Y+
Sbjct: 346 ELVTKLTSRVEMSYS 360


>gi|300856377|ref|YP_003781361.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
 gi|300436492|gb|ADK16259.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
          Length = 388

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 103/380 (27%), Positives = 176/380 (46%), Gaps = 26/380 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             +  +I+L  L  N   +    GN +    VVK NAYG G  +++  L   GV    V+
Sbjct: 6   RPVWEEINLDNLVYNIRQIKLKVGNNKGLIGVVKANAYGHGALEVSQVLLENGVNRLAVS 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSH 122
            ++E ++LR    +A I +L  +       I D N+ PV+ S    +  SK+      + 
Sbjct: 66  ELDEAIELRENGIKAPIMILGIVPDTFLNDIIDYNVEPVVPSYEYASKLSKVAKNKWKTA 125

Query: 123 PYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + VDTG  R+G    E +++  +N       ++  + SH + +D+     +  Q E+
Sbjct: 126 KIHVAVDTGMGRIGFQPNENSIEEIYNISKLPNIEIQSLFSHFSTSDEKDKTYSQEQFEK 185

Query: 182 FRTLISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---Q 233
           ++T  +    + I+ S   +A+S+ I+   + +    RPGI +YG     +        +
Sbjct: 186 YKTFYNELINRKIKISMRDIANSAAIMELQDTYCDAVRPGIIIYGYYPSDDVDRNDLSIK 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++ +A++  ++   AG+ V YG + K  R S+IA   IGYADGY   LSG        
Sbjct: 246 PVMSLKAKVAYVKTLEAGKYVGYGRKFKSERKSVIATLPIGYADGYTRMLSG-------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                K  + G   P++G I MD  M D+TD+  + VGD + + G         +D+A  
Sbjct: 298 ---KAKVIVNGKFAPVVGNICMDQCMIDVTDAGEVNVGDEVILMGEKNGLKFDAEDIAKT 354

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++L  I  R  + Y
Sbjct: 355 IGTISYEILCSISRRVPRVY 374


>gi|153803236|ref|ZP_01957822.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-3]
 gi|124121216|gb|EAY39959.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-3]
          Length = 376

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 177/375 (47%), Gaps = 21/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F
Sbjct: 12  MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 70  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 128

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSV 177
                 L+VD+G +RLG+   ++  DF       + + +    +SH  CAD+        
Sbjct: 129 TPVMVWLKVDSGMHRLGVVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVE 188

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
           Q E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q 
Sbjct: 189 QTELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQP 247

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T            
Sbjct: 248 VMTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN--------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G    + G  VPI G+++MDM   D+       VGD   ++G ++ +++VA   GT  
Sbjct: 299 --GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIG 356

Query: 355 YDLLVRIGTRYAKFY 369
           Y+L+ ++ +R    Y
Sbjct: 357 YELVTKLTSRVEMSY 371


>gi|325292459|ref|YP_004278323.1| Alanine racemase [Agrobacterium sp. H13-3]
 gi|325060312|gb|ADY64003.1| Alanine racemase [Agrobacterium sp. H13-3]
          Length = 391

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 186/369 (50%), Positives = 248/369 (67%), Gaps = 2/369 (0%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +  LRL +DL AL +NW  M   SG ARTAAVVK +AYGLG E     LY+AG +DFFV
Sbjct: 18  EHAPLRLTVDLGALADNWRDMKKRSGKARTAAVVKADAYGLGIEDCGATLYHAGARDFFV 77

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +V EG  LR Y P+ARIFVL GI  GQE+ +FD +L+PV++S  QL+F+   ++    H
Sbjct: 78  ATVSEGATLRSYAPEARIFVLSGIWQGQERQVFDNDLVPVLASEEQLSFWMATVAERGEH 137

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P AL VDTGFNRLGL L +AL    +          L++SHLACAD PSS +N VQLE F
Sbjct: 138 PCALHVDTGFNRLGLPLDDALFLADDVTRPASFDPVLVLSHLACADTPSSPMNKVQLESF 197

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           R + + ++GIE+SL++S+GI LGP+YHF LTRPGI+LYGG    + ++PM+ V  AEARI
Sbjct: 198 RKVSAAFEGIESSLSASAGIFLGPDYHFDLTRPGIALYGGEAINDVANPMRPVAKAEARI 257

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I IR+A  G+ VSYGG   L R S +A+A++GYADGY  +LSG           G  G +
Sbjct: 258 IQIREAGEGQTVSYGGTYLLKRASRLAIASVGYADGYQRSLSGSGIPLREMGHGGAYGIV 317

Query: 303 KGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            G+  P+ G++TMD+T+FDITD    ++  GDYI++FGP + LD+VA A+GT  Y++L  
Sbjct: 318 NGHKAPVAGRVTMDLTIFDITDIPANAVRTGDYIELFGPKVPLDEVARAAGTIGYEMLTG 377

Query: 361 IGTRYAKFY 369
           +G RY + Y
Sbjct: 378 LGLRYERQY 386


>gi|322807721|emb|CBZ05296.1| alanine racemase [Clostridium botulinum H04402 065]
          Length = 386

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 175/384 (45%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N   +  +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV  
Sbjct: 1   MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  + E ++LR+   +  I +L         ++ D N+   + S       SK+    
Sbjct: 61  LAVAVLSEAMELRMSGVKEPIMILGYTPWALGDMLLDNNIEQSVYSYNDALELSKIAVLK 120

Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  + VDTG  R+G    +E+++  +        ++  + SH + AD+        
Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIKIEGLFSHFSSADELDKDYTLY 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229
           Q+ ++   I+  +          +A+S+ I+   N H    R GI +YG       +  +
Sbjct: 181 QMNKYNEFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRDN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS     
Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  + G + P++G++ MD  M D+T   +++VGD + I G +       ++
Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAEN 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y+++  +  R  + Y
Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373


>gi|307267174|ref|ZP_07548681.1| alanine racemase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917790|gb|EFN48057.1| alanine racemase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 384

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 166/379 (43%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R +I L  + +N   +    G   +   VVK NAYG G  ++A  L   GV    V 
Sbjct: 6   RPTRAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACQVAKVLIENGVSYLAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
           ++EE ++LR       I V+      Q K +   N+   +  +  +    ++  + G   
Sbjct: 66  TIEEALELRECGINIPILVIGYTPLTQAKELIVHNITQTVFDINYVKDLERIALNVGKKA 125

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG  R+G + L+ A          +  ++  I SH A +D+ +      Q + 
Sbjct: 126 KVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKNKTYAEKQFDM 185

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F+ L+     KGI      +A+S  I+     +  + RPGI LYG     ++ +   ++ 
Sbjct: 186 FKKLLERLKEKGINIPLKHIANSGAIIDLKYTYLDMVRPGIVLYGSYPSEEVERPLDLKQ 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + +I+ I++   G  +SYG      R S IA   +GYADG+   LS          
Sbjct: 246 TMGFKTKIVHIKEVPEGTSISYGRTFITKRKSKIATLPVGYADGFNRLLSN--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  +KG   P++G+I MD TM D+TD   +E+GD + IFG      I  +++A   
Sbjct: 297 --NHHVLVKGKYAPVIGRICMDQTMIDVTDIEGVELGDDVVIFGNQEGEKITAEEIAKKL 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++   I  R  + Y
Sbjct: 355 NTIPYEVYCGISRRVPRIY 373


>gi|126659612|ref|ZP_01730742.1| alanine racemase [Cyanothece sp. CCY0110]
 gi|126619058|gb|EAZ89797.1| alanine racemase [Cyanothece sp. CCY0110]
          Length = 402

 Score =  414 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 171/379 (45%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++IDL+AL +N   +  L S      AVVK +AYG G   +A     AG     V
Sbjct: 19  RKRAWVEIDLSALSHNVRQIKQLLSPKTALMAVVKADAYGHGAIAVAQTALQAGASALAV 78

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
            ++ EG++LR     A I +L  I  P +   I   NL P +    Q    S+ L  C  
Sbjct: 79  ATLGEGIELREAGITAPILILGAINTPEEIAAIAHWNLEPTLCYPEQAMVVSQTLSQCEK 138

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             P  L++DTG +RLG+   +  +F           L  + SHLA ADDP      +Q +
Sbjct: 139 VLPVHLKLDTGMSRLGIPWHQGTEFVTLVKQLPYLNLRSVYSHLATADDPDPSHMYLQHK 198

Query: 181 RFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQ 233
           RF++ I++ K           A+S+  L+ P  H+ L R G+ LYG     +     P++
Sbjct: 199 RFKSAIANLKTQGIGPPRLHFANSAATLIAPQLHYDLVRVGLGLYGLYPAPHLRSIVPLK 258

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +A+I  I+       VSYG Q    R   IAV  IGYADG P  LS         
Sbjct: 259 PVLQVKAKITQIKSIPTNTGVSYGYQFVSDRPMKIAVVGIGYADGVPRNLSNRL------ 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I+G  V  +G ITMD  M D++    ++VGD + + G D    I  D  A  
Sbjct: 313 -----QVLIQGQRVRQIGAITMDQLMLDVSHLRQVKVGDVVTLIGQDGDYEITADHWARM 367

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT ++++L     R  + 
Sbjct: 368 LGTISWEILCGFKHRLPRI 386


>gi|187776664|ref|ZP_02993137.1| hypothetical protein CLOSPO_00179 [Clostridium sporogenes ATCC
           15579]
 gi|187775323|gb|EDU39125.1| hypothetical protein CLOSPO_00179 [Clostridium sporogenes ATCC
           15579]
          Length = 386

 Score =  414 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 174/384 (45%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N   +  +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV  
Sbjct: 1   MFRNLRAVWAEIDLDNLQHNLKEIKKICGNKEIIGVIKANAYGHGAMEIAPTLLANGVSR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  + E ++LR+   +  I +L         ++ D ++   + S       S++    
Sbjct: 61  LAVAVLSEAMELRMSGVKEPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSRIAVLK 120

Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  + VDTG  R+G    +E+++  +        ++  + SH + AD+        
Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVENVYKISKLPNIKIEGVFSHFSSADELDKDYTLY 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229
           Q+ ++   I+  +          +A+S+ I+   + H    R GI +YG       +  +
Sbjct: 181 QMNKYNQFINKLEEKNIQVPIKHIANSAAIIDLESTHLDAVRAGIIMYGYYPSNYVLTNN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +  I+ I+K  +GE +SYG   K  ++S+IA   IGYADGY   LS     
Sbjct: 241 TKLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTEKESIIATLPIGYADGYNRLLSN---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  + G + P++G++ MD  M D+T    ++VGD + I G +       +D
Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTSIEDLKVGDVVTIMGEESGVSYTAED 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y+++  +  R  + Y
Sbjct: 350 IASEIGTISYEVICNVNKRVPRVY 373


>gi|304316039|ref|YP_003851184.1| alanine racemase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777541|gb|ADL68100.1| alanine racemase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 388

 Score =  414 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 102/379 (26%), Positives = 167/379 (44%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +++L  + +N+  +  ++   A   AVVK NAYG G  +I+  L   GV    V 
Sbjct: 6   RPTWAEVNLNNIIHNYKEIRKITDKKAGIMAVVKANAYGHGSYEISKELIKCGVDYLAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           +++E ++LR +     I VL         +I   ++      +  +   SK  +  G   
Sbjct: 66  TIDEALELREHGISKPILVLGYTPSKFADVIVKYDITQTAFELGYVKEISKEAIKQGKDA 125

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG  R+G   + +A +      + K   +  I SH + +D+        Q + 
Sbjct: 126 KIHVKIDTGMGRIGYNDMNKAYEEIVAMTSLKGIYIEGIFSHFSSSDERDKEYTMRQFKI 185

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F  L    K  GI+     +A+S+ IL  P  H  + RPGI LYG     +++K   ++ 
Sbjct: 186 FNDLTDRLKRSGIDIPIRHIANSAAILDLPETHLDMVRPGIILYGSYPSEEVDKKISLKC 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  ++I+ I+    GE +SY    K +R S IA   IGYADG    LS   S      
Sbjct: 246 TISLRSKIVYIKDVPEGEYISYNRTYKTSRKSRIATLPIGYADGLNRLLSNNHS------ 299

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  IKG   PI+GKI MD  M D+T    ++ GD   I G      +  D++A   
Sbjct: 300 -----VIIKGKYAPIVGKICMDQCMVDVTSIEGVKEGDVATIMGESDGKIVSADEIANKL 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++   I  R  + Y
Sbjct: 355 KTISYEVYCGISRRVPRIY 373


>gi|28212093|ref|NP_783037.1| alanine racemase [Clostridium tetani E88]
 gi|81841128|sp|Q890X1|ALR_CLOTE RecName: Full=Alanine racemase
 gi|28204536|gb|AAO36974.1| alanine racemase [Clostridium tetani E88]
          Length = 387

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 166/379 (43%), Gaps = 24/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL  L  N   +  +       AVVK +AYG G   IAP L   G     V  
Sbjct: 6   RPVWAEIDLDKLVYNMQQIKNICKGREIIAVVKADAYGHGALDIAPILLENGATRLAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           + E ++LR     A I VL        +     N+   + S       S++         
Sbjct: 66  LNEAIELRRGGIDAPIMVLGFTPDSLIETSLKYNIEQTVYSYEIAKEISEVAVKSNRVAK 125

Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G     E++D  +        Q+  I SH A AD+       +Q  +F
Sbjct: 126 IHIALDTGMGRIGFLPDKESIDKIYKLSKLPNIQIEGIFSHFASADEQDKTYTKLQFNKF 185

Query: 183 RTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQT 234
             + +    +GI+     +A+S+ I+  P  H +  RPGI +YG       +     ++ 
Sbjct: 186 LWVCNSLEERGIDIKIRHIANSAAIIDMPELHLEGVRPGIIMYGYYPSSEVNKGKLDLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +  I+ I+    G+ +SYG + K  ++S+IA   +GYADGY  +L           
Sbjct: 246 VMSLKTTIVHIKNMEKGKYISYGREFKTEKESIIATLPVGYADGYSRSL----------Y 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
             GGK  +K  + P++G+I MD  M D++    +++GD + + G +    +  +++    
Sbjct: 296 DKGGKIILKEQLAPLVGRICMDQCMIDVSHIEDVKIGDEVILMGENKGIKMTAEEIGNLL 355

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++   I  R  + Y
Sbjct: 356 GTINYEVTCMISKRVPRVY 374


>gi|37681162|ref|NP_935771.1| alanine racemase [Vibrio vulnificus YJ016]
 gi|81859828|sp|Q7MH94|ALR_VIBVY RecName: Full=Alanine racemase
 gi|37199913|dbj|BAC95742.1| alanine racemase [Vibrio vulnificus YJ016]
          Length = 372

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 176/375 (46%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     IDL AL++N   +   + +++  AVVK N YG G   +A      G   F
Sbjct: 12  MNYMKAATACIDLVALQHNLQLIKQQAPHSKLMAVVKANGYGHGLRHVAKHAV--GADAF 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G +  G   ++   N+  V+    QL          
Sbjct: 70  GVARIEEALQLRACGVVKPILLLEGFYSSGDLPVLVTNNIQTVVHCEEQLRDLENA-ELE 128

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++   F         + +    +SH  CAD+ ++ +   Q
Sbjct: 129 TPVVVWLKIDSGMHRLGVRPEQYQAFVERLHQCPNVAKPLRYMSHFGCADEMNNEMTPKQ 188

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
           +E F +L    KG E SLA+S+G+L       +  RPGI +YG +   +K+      + V
Sbjct: 189 IELFLSLTRGCKG-ERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGYKPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R   AGE V YG      RD+ + V AIGY DGYP T             
Sbjct: 248 MTLKSHLIAVRDVKAGESVGYGATWISERDTKVGVIAIGYGDGYPRTAPN---------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+    +  VGD   ++G D+  +DVA   GT  Y
Sbjct: 298 -GTPVLVNGRKVPIAGRVSMDMLTVDLGPDATDHVGDEAILWGADLPAEDVAQHIGTIAY 356

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++ +R    Y+
Sbjct: 357 ELVTKLTSRVEMSYS 371


>gi|320155181|ref|YP_004187560.1| alanine racemase, biosynthetic [Vibrio vulnificus MO6-24/O]
 gi|319930493|gb|ADV85357.1| alanine racemase, biosynthetic [Vibrio vulnificus MO6-24/O]
          Length = 361

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 176/375 (46%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     IDL AL++N   +   + +++  AVVK N YG G   +A      G   F
Sbjct: 1   MNYMKAATACIDLVALQHNLQLIKQQAPHSKLMAVVKANGYGHGLRHVAKHAV--GADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G +  G   ++   N+  V+    QL          
Sbjct: 59  GVARIEEALQLRACGVVKPILLLEGFYSSGDLPVLVTNNIQTVVHCEEQLRDLENA-ELE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++   F         + +    +SH  CAD+ ++ +   Q
Sbjct: 118 TPVVVWLKIDSGMHRLGVRPEQYQAFVERLHQCPNVAKPLRYMSHFGCADEMNNEMTPKQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
           +E F +L    KG E SLA+S+G+L       +  RPGI +YG +   +K+      + V
Sbjct: 178 IELFLSLTRGCKG-ERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGYKPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R   AGE V YG      RD+ + V AIGY DGYP T             
Sbjct: 237 MTLKSHLIAVRDVKAGESVGYGATWISERDTKVGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+    +  VGD   ++G D+  +DVA   GT  Y
Sbjct: 287 -GTPVLVNGRKVPIAGRVSMDMLTVDLGPDATDHVGDEAILWGADLPAEDVAQHIGTIAY 345

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++ +R    Y+
Sbjct: 346 ELVTKLTSRVEMSYS 360


>gi|261210391|ref|ZP_05924685.1| alanine racemase biosynthetic [Vibrio sp. RC341]
 gi|260840449|gb|EEX67015.1| alanine racemase biosynthetic [Vibrio sp. RC341]
          Length = 364

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 178/375 (47%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   + +++  AVVK N YG G   IA      G   F
Sbjct: 1   MNYMKAATAYINLDALQHNLQRVKQQAPDSKIMAVVKANGYGHGLRHIARYAM--GADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-TQLE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++  DF         + +    +SH  CAD+      + Q
Sbjct: 118 TPVMVWLKIDSGMHRLGVRPEQYQDFVTRLHQCDNVAKPLRYMSHFGCADELDKSTTAAQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V
Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAAQLGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R   AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 237 MTLKSHLIAVRDVKAGESVGYGGTWISQRDTKIGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+    S  VGD   ++G ++ +++VA   GT  Y
Sbjct: 287 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPEASDCVGDEAMLWGGELPVEEVAAHIGTLGY 345

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++ +R    Y+
Sbjct: 346 ELVTKLTSRVEMSYS 360


>gi|262401537|ref|ZP_06078104.1| alanine racemase biosynthetic [Vibrio sp. RC586]
 gi|262352252|gb|EEZ01381.1| alanine racemase biosynthetic [Vibrio sp. RC586]
          Length = 361

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 177/365 (48%), Gaps = 20/365 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++N   +   + +++  AVVK N YG G   IA      G   F V  +EE ++
Sbjct: 8   INLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIARYAI--GADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G + PG   ++   N+  V+    QL    +           L+VD
Sbjct: 66  LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LETPVMVWLKVD 124

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLG+  ++  DF +       + +    +SH  CAD+      + Q E F +L   
Sbjct: 125 SGMHRLGVRPEQYRDFVNRLHQCANVAKPLRYMSHFGCADELDKSTTAEQTELFLSLTQG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILI 245
            +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V+T ++ +I +
Sbjct: 185 CQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPVMTLKSHLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AGE V YGG     RD+ I V AIGY DGYP T              G    + G 
Sbjct: 244 REVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRTAPN-----------GTPVVVNGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI G+++MDM   D+    +  VGD   ++G ++ +++VA   GT  Y+L+ ++ +R 
Sbjct: 293 RVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGYELVTKLTSRV 352

Query: 366 AKFYT 370
              Y+
Sbjct: 353 EMSYS 357


>gi|312142736|ref|YP_003994182.1| alanine racemase [Halanaerobium sp. 'sapolanicus']
 gi|311903387|gb|ADQ13828.1| alanine racemase [Halanaerobium sp. 'sapolanicus']
          Length = 377

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/381 (28%), Positives = 176/381 (46%), Gaps = 24/381 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            S   + ++IDL  LK N   +   L+ +    AVVK + YG G    A A   AG    
Sbjct: 7   KSKRPVWVEIDLNNLKFNIKEIKKTLNSDTIFTAVVKADGYGHGAVPTAEAAIEAGADRL 66

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119
            V   EEG++LR     A I +L  + P Q   +   +LIP IS        + L +   
Sbjct: 67  AVAIPEEGIELREAGIAAPIEILGELLPEQLPELIRYDLIPTISKFKTAERLNNLCAGYN 126

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           +     L +DTG NR+G++ ++AL            ++  I++H A AD+       +Q 
Sbjct: 127 LKKKIHLNIDTGMNRVGVNYKKALPLLKKITELPNLEIEGIMTHFARADELEKEYTLIQW 186

Query: 180 ERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
           ERF  LI     + IE      A+S+ ++  P +   + R GI +YG   +  +  +  +
Sbjct: 187 ERFNQLIEKLEAENIEIPIKHCANSAAVIDFPEFALDMVRAGIMIYGLKPSPDLKNNFNL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ ++RI+ ++   AGE +SYG +    +   IA   +GYADGY   L         
Sbjct: 247 KAVLSWKSRIVRLKDVPAGEGISYGSEYITPKREKIATIPLGYADGYARILGN------- 299

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                    +KG   PI G+I MD  M D++    ++VGD + + G      +  D +A 
Sbjct: 300 ----KASVLVKGKRAPIRGRICMDQFMVDVSGIEGVKVGDEVVLIGSQNGLSLSADKLAE 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            +GT NY+++ RI  R A+ Y
Sbjct: 356 QAGTINYEIVSRISKRVARIY 376


>gi|153939434|ref|YP_001392754.1| alanine racemase [Clostridium botulinum F str. Langeland]
 gi|152935330|gb|ABS40828.1| alanine racemase [Clostridium botulinum F str. Langeland]
 gi|295320733|gb|ADG01111.1| alanine racemase [Clostridium botulinum F str. 230613]
          Length = 386

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 175/384 (45%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N   +  +IDL  L++N   +  + GN     V+K NAYG G  ++AP L   GV  
Sbjct: 1   MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEVAPTLLENGVSR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  + E ++LR+   +  I +L         ++ D ++   + S       SK+    
Sbjct: 61  LAVAVLSEAMELRMSGVKESIMILGYTPGALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120

Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  + VDTG  R+G    +E+++  +        ++  + SH + AD+        
Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIKIEGLFSHFSSADELDKDYTLY 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229
           Q+ ++   I+  +          +A+S+ I+   N H    R GI +YG       +  +
Sbjct: 181 QMNKYNEFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRDN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS     
Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  + G + P++G++ MD  M D+T   +++VGD + I G +       +D
Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAED 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y+++  +  R  + Y
Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373


>gi|20808552|ref|NP_623723.1| alanine racemase [Thermoanaerobacter tengcongensis MB4]
 gi|23813661|sp|Q8R860|ALR2_THETN RecName: Full=Alanine racemase 2
 gi|20517179|gb|AAM25327.1| Alanine racemase [Thermoanaerobacter tengcongensis MB4]
          Length = 388

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 100/379 (26%), Positives = 170/379 (44%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R++++L ++ +N+  +  + G+  +   VVK NAYG G   +A AL   GV    V 
Sbjct: 6   RPTRVEVNLDSIVHNFREIKRVVGDRVKVMGVVKANAYGHGAYHVAKALVENGVDYLAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122
           +VEE ++LR Y   A + +L      Q     + ++      +  +    ++ S  G   
Sbjct: 66  TVEEALELRSYGITAPVLILGYTPLSQAGEAVEKDVTFTAFDLKYVKELGEIASRKGKKA 125

Query: 123 PYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG  R+G +  +  +         +  +L  I SH A +D+        Q ER
Sbjct: 126 KIHVKIDTGMGRIGYTDFDLAEREIEEMSKLEGIELEGIFSHFATSDEKDKDYAREQFER 185

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234
           F  ++     +G+      +A+S  I      +  + RPGI+LYG      +NK   ++ 
Sbjct: 186 FADMLKRLEKRGVNITLKHIANSGAITDLNYAYLDMVRPGITLYGSYPSNDVNKILDLRP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + +I+ I++      +SYG      R S IA   IGYADG    LS          
Sbjct: 246 AMNFKTKIVYIKEVPENTSISYGRTFITKRPSKIATLPIGYADGLNRLLSN--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               +  ++G  VPI+G++ MD TM D+T+   +EVGD + IFG      I  DD+A   
Sbjct: 297 --NHEVLVRGKYVPIVGRVCMDQTMIDVTEVEGVEVGDEVVIFGEQEGKRITADDIAKKL 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  +++   I  R  + Y
Sbjct: 355 RTIPHEVYCGISRRVPRIY 373


>gi|254479071|ref|ZP_05092425.1| alanine racemase [Carboxydibrachium pacificum DSM 12653]
 gi|214034987|gb|EEB75707.1| alanine racemase [Carboxydibrachium pacificum DSM 12653]
          Length = 388

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 100/379 (26%), Positives = 170/379 (44%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R++++L ++ +N+  +  + G+  +   VVK NAYG G   +A AL   GV    V 
Sbjct: 6   RPTRVEVNLDSIVHNFREIKRVVGDRVKVMGVVKANAYGHGAYHVAKALVENGVDYLAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122
           +VEE ++LR Y   A + +L      Q     + ++      +  +    ++ S  G   
Sbjct: 66  TVEEALELRSYGITAPVLILGYTPLSQAGEAVEKDVTFTAFDLKYVKELGEIASRKGKKA 125

Query: 123 PYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG  R+G +  +  +         +  +L  I SH A +D+        Q ER
Sbjct: 126 KIHVKIDTGMGRIGYTDFDLAEREIEEMSKLEGIELEGIFSHFATSDEKDKDYAREQFER 185

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234
           F  ++     +G+      +A+S  I      +  + RPGI+LYG      +NK   ++ 
Sbjct: 186 FADMLKRLEKRGVNITLKHIANSGAITDLNYAYLDMVRPGITLYGSYPSDDVNKILDLRP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + +I+ I++      +SYG      R S IA   IGYADG    LS          
Sbjct: 246 AMNFKTKIVYIKEVPENTSISYGRTFITKRPSKIATLPIGYADGLNRLLSN--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               +  ++G  VPI+G++ MD TM D+T+   +EVGD + IFG      I  DD+A   
Sbjct: 297 --NHEVLVRGKYVPIVGRVCMDQTMIDVTEVEGVEVGDEVVIFGEQEGKRITADDIAKKL 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  +++   I  R  + Y
Sbjct: 355 RTIPHEVYCGISRRVPRIY 373


>gi|118444310|ref|YP_877347.1| alanine racemase [Clostridium novyi NT]
 gi|166919551|sp|A0PY95|ALR_CLONN RecName: Full=Alanine racemase
 gi|118134766|gb|ABK61810.1| alanine racemase [Clostridium novyi NT]
          Length = 387

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/380 (28%), Positives = 168/380 (44%), Gaps = 26/380 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I+L  L +N   +  LS       +VK +AYG G   I P L   G     V  
Sbjct: 6   RPVWAEINLDNLASNMKHIKELSNTKEIIGIVKADAYGHGALDIVPTLIENGATALAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HP 123
           V EGV+LR    +  I VL    P    ++   ++   + S+      SK          
Sbjct: 66  VSEGVELRRGGIECPIMVLGFTPPSLIDMLLKHDIEQTVFSLDYAKELSKAAEKMHKVAK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG  R+G    ++++            ++  + SH + AD+ +   ++ QL +F
Sbjct: 126 IHIAVDTGMGRIGFLPNEQSIQDVKAISMLPNIKIKGMFSHFSTADEKNKEYSAYQLNQF 185

Query: 183 RTLISHYK----GIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
                  K     IE   +++S+ I+  P   F+  RPGI LYG             ++ 
Sbjct: 186 NKFYEGLKRENVNIETRHISNSAAIMDLPETIFEGVRPGIILYGYYPSNEVDKTKLELKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  +  ++ I+K  +GE +SYG + K  R+SLIA   +GYADGY   L G         
Sbjct: 246 VMQLKTNVVHIKKIPSGEYISYGRKFKTDRESLIATLPVGYADGYTRLLFG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALA 349
               K  I G + P++G+I MD  M DITD    I+VG+ + + G      I  DD+A  
Sbjct: 297 --KAKVIINGQLAPVVGRICMDQCMVDITDIKGDIKVGEEVILIGEKNGVKIDADDIAEM 354

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  I  R  + Y
Sbjct: 355 LGTINYEVICMISKRVPRVY 374


>gi|51894072|ref|YP_076763.1| alanine racemase [Symbiobacterium thermophilum IAM 14863]
 gi|81826014|sp|Q67K79|ALR_SYMTH RecName: Full=Alanine racemase
 gi|51857761|dbj|BAD41919.1| alanine racemase [Symbiobacterium thermophilum IAM 14863]
          Length = 377

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 171/377 (45%), Gaps = 23/377 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                ++DL A++ N  ++  +S   R  AVVK N YG G   +A A   AG     V S
Sbjct: 7   RPTWAEVDLNAVRANIRALKRISKAPRLMAVVKANGYGHGAVPVATAAIEAGADWLGVAS 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHP 123
           VEEGV LR +   A I VL  + PGQ + +    L   +         ++     G    
Sbjct: 67  VEEGVTLRRHGISAPILVLGYVSPGQAEAVLTEGLRVALFDGELGQALNREGRRLGRWAR 126

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182
             L+VDTG  R+GL   E              ++  + +HLA AD+P +    +QLER+ 
Sbjct: 127 VHLKVDTGMGRIGLQPAEVGRLGRELARLDHVEVEGVFTHLATADEPGNPYTRLQLERYE 186

Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVV 236
                   +  +      A+S+G++L P  H+ + R GI++ G       + P++    +
Sbjct: 187 AALAELAAAGVRPAIRHAANSAGLMLHPEAHYDMVRSGIAVVGLPPAPGVAWPVKLAPAL 246

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T + R+ L++   AG  +SYG      R   IA   +GYADGYP  LS            
Sbjct: 247 TWKTRVGLVKWLEAGHSISYGCTYTTARREQIATLPVGYADGYPRRLSNR---------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGT 352
             +  I+G   P++G +TMD  M  + D L + VGD + +     G +I   ++A  + T
Sbjct: 297 -AQVLIRGRRCPVVGVVTMDQMMVRVPDDLPVRVGDEVVLIGRQGGEEITATELAGLADT 355

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y+++  I  R  +FY
Sbjct: 356 ISYEIVCGISRRVPRFY 372


>gi|15888423|ref|NP_354104.1| alanine racemase [Agrobacterium tumefaciens str. C58]
 gi|20137302|sp|P58736|ALR1_AGRT5 RecName: Full=Alanine racemase, biosynthetic
 gi|15156111|gb|AAK86889.1| alanine racemase [Agrobacterium tumefaciens str. C58]
          Length = 391

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 183/369 (49%), Positives = 246/369 (66%), Gaps = 2/369 (0%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
               LRL +DL AL +NW  M   SG ARTAAVVK +AYGLG E     LY+AG +DFFV
Sbjct: 18  EQAPLRLTVDLGALADNWRDMKKRSGRARTAAVVKADAYGLGIEDCGATLYHAGARDFFV 77

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +V EG  LR Y P+ARIFVL GI  GQE+ +FD +L+PV++S  QL+F+   ++    H
Sbjct: 78  ATVAEGATLRSYAPEARIFVLSGIWQGQERQVFDNDLVPVLASEEQLSFWMATVAERGDH 137

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P AL VDTGFNRLGL L +AL    +          L++SHLACAD PSS +N  QLE F
Sbjct: 138 PCALHVDTGFNRLGLPLDDALFLADDVTRPASFDPVLVLSHLACADTPSSPMNRAQLESF 197

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           R + + ++GIE+SL++S+GI LGP+YHF LTRPGI+LYGG    + ++PM+ V  AEARI
Sbjct: 198 RRVSAAFEGIESSLSASAGIFLGPDYHFDLTRPGIALYGGEAVNDVANPMRPVAKAEARI 257

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I IR+A  G+ VSYG    L R S +A+A++GYADGY  +LSG           G  G +
Sbjct: 258 IQIREAGEGQTVSYGSSFLLKRASRLAIASVGYADGYQRSLSGSGIPLREMGHGGAYGVV 317

Query: 303 KGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            G+ VP+ G++TMD+T+FD+TD    +I  GDYI++FGP++ +D+ A A+GT  Y++L  
Sbjct: 318 NGHKVPVAGRVTMDLTIFDVTDVPANAIRAGDYIELFGPNVPVDETARAAGTIGYEMLTG 377

Query: 361 IGTRYAKFY 369
           +G RY + Y
Sbjct: 378 LGLRYERQY 386


>gi|307150203|ref|YP_003885587.1| alanine racemase [Cyanothece sp. PCC 7822]
 gi|306980431|gb|ADN12312.1| alanine racemase [Cyanothece sp. PCC 7822]
          Length = 407

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 176/379 (46%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                ++ID  AL +N  S+   LS +    AVVK +AYG G  ++A     AG     +
Sbjct: 25  RHRAWIEIDHHALAHNIRSIKQILSPSTALMAVVKADAYGHGAVRVAQTALQAGATWLAI 84

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
            ++ EG++LR     A I +L  I  P +   I    L P + +  Q   +S+ L     
Sbjct: 85  ATLGEGIELREAGIAAPILILGAINTPAEIATIAQWKLQPTLCNPQQALVFSETLTKLDQ 144

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           S P  L++DTG +RLG    EA  F          +++ I SHLA ADDP   V  +Q +
Sbjct: 145 SLPVHLKLDTGMSRLGTIWTEAAAFVQLVQQLPYLKIASIYSHLATADDPDPTVMRLQHQ 204

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQ 233
           RF   I+  K  GI       A+S+  L  P+ H+ L R G+ LYG     +  +S  ++
Sbjct: 205 RFEAAIAEIKANGITPPRLHFANSAATLTDPSLHYDLVRVGLGLYGLYPAPHLRESVDLK 264

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +AR+  ++   AG  VSYG Q    R   IAV  IGYADG    LS         
Sbjct: 265 PVLQVKARVTQVKTIPAGTGVSYGYQFISDRPLRIAVVGIGYADGVQRNLSNRL------ 318

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  ++G  +  +G ITMD  M D+++   ++ G+ + + G D    I  D+ A  
Sbjct: 319 -----EVLVRGQRISQIGAITMDQLMLDVSNIPDLQAGEVVTLIGKDQDQEITADEWADK 373

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT ++++L     R  + 
Sbjct: 374 LGTISWEILCGFKHRLPRV 392


>gi|289579033|ref|YP_003477660.1| alanine racemase [Thermoanaerobacter italicus Ab9]
 gi|289528746|gb|ADD03098.1| alanine racemase [Thermoanaerobacter italicus Ab9]
          Length = 385

 Score =  412 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 162/379 (42%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R +I L  + +N   +    G   +   VVK NAYG G   +A  L   GV    V 
Sbjct: 6   RPTRAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACHVAKVLVENGVCYLGVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
           ++EE ++LR       I V       Q + +   N+   +  +  +    K+    G   
Sbjct: 66  TIEEALELRECGINIPILVFGYTPLTQAEELIVHNITQTVFDINYVEDLEKIALKVGKKA 125

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG  R+G + L+ A          +  ++  I SH A +D+        Q + 
Sbjct: 126 KVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKDKSYAEQQFDM 185

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F+ L+     KGI      +A+S  I+     +  + RPGI LYG     ++ +   ++ 
Sbjct: 186 FKKLLERLKEKGINIPLKHMANSGAIIDLKYTYLDMVRPGIVLYGSYPSEEVKRPLDLKQ 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + +I+ I++   G  +SYG      R S IA   +GYADG+   LS          
Sbjct: 246 TMGFKTKIVYIKEVPEGTSISYGKTFITKRKSKIATLPVGYADGFNRLLSNNY------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  +KG    ++G+I MD TM D+TD   +EVGD + IFG      I  +++A   
Sbjct: 299 ----HVLVKGKYAAVVGRICMDQTMIDVTDIEGVEVGDDVIIFGNQEGEKITAEEIAKKL 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++   I +R  + Y
Sbjct: 355 NTIPYEVYCGISSRVPRIY 373


>gi|297545238|ref|YP_003677540.1| alanine racemase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296843013|gb|ADH61529.1| alanine racemase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 385

 Score =  412 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 161/379 (42%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R +I L  + +N   +    G   +   VVK NAYG G   +A  L   GV    V 
Sbjct: 6   RPTRAEIYLDNIAHNLSEVKRWVGKKVKIMGVVKANAYGHGACHVAKVLVENGVCYLGVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
           ++EE ++LR       I V       Q + +   N+   +  +  +    K+  + G   
Sbjct: 66  TIEEALELRECGINIPILVFGYTPLTQAEELIVHNITQTVFDINYVEDLEKIALNVGKKA 125

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG  R+G + L+ A          +  ++  I SH A +D+        Q + 
Sbjct: 126 KVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKDKSYAEQQFDM 185

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F+ L+   K          +A+S  I+     +  + RPGI LYG     ++ +   ++ 
Sbjct: 186 FKKLLERLKEKRINIPLKHMANSGAIIDLKYTYLDMVRPGIVLYGSYPSEEVKRPLDLRQ 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + +I+ I++   G  +SYG      R S IA   +GYADG+   LS          
Sbjct: 246 TMGFKTKIVYIKEVPEGTSISYGKTFITKRKSKIATLPVGYADGFNRLLSNNY------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  +KG    ++G+I MD TM D+TD   +EVGD + IFG      I  +++A   
Sbjct: 299 ----HVLVKGKYAAVVGRICMDQTMIDVTDIEGVEVGDDVIIFGNQEGEKITAEEIAKKL 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++   I +R  + Y
Sbjct: 355 NTIPYEVYCGISSRVPRIY 373


>gi|220930291|ref|YP_002507200.1| alanine racemase [Clostridium cellulolyticum H10]
 gi|220000619|gb|ACL77220.1| alanine racemase [Clostridium cellulolyticum H10]
          Length = 389

 Score =  412 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 100/381 (26%), Positives = 171/381 (44%), Gaps = 27/381 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +I L  + +N   +  ++G NA    VVK +AYG G  ++A  L   G   F V+ 
Sbjct: 7   RAWAEISLDNIAHNIREIRKITGKNAEIMGVVKADAYGHGVMEVAKTLLENGASRFAVSM 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHP 123
           ++E ++LR    +  I +L    P +   I + ++   + S       S + +  G    
Sbjct: 67  LDEAIQLRRAGIEVPILILGYTDPIRANEIIENDVTQSVFSHDLAQALSDEAVRQGKKVK 126

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++DTG +R+G      A+    +        +  + +H A AD+ +      Q ERF
Sbjct: 127 IHIKIDTGMSRIGFLPGYSAVKNVVDISTLPNIIIEGLFTHFATADEKNRDYTYTQFERF 186

Query: 183 RTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQT 234
            ++    + I   +     A+S+ ++  P  H  + RPGI LYG             ++ 
Sbjct: 187 MSICCELQRIGIHIPVKHCANSAAVIEYPEMHLDMVRPGIILYGMYPSSEVDKSKIDLKP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +A +I++++      +SYG      R S IA   IGYADG+   LS          
Sbjct: 247 AMTLKANVIMVKEVEKNTSISYGRIFTTNRTSKIATIPIGYADGFTRMLSN--------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFG----PDIKLDDVALA 349
              GK  I G + P++G+I MD  M D+T   S +EVGD + + G     +I ++DVA  
Sbjct: 298 --KGKVLIHGELAPVVGRICMDQCMVDVTHIGSKVEVGDEVVLIGSQGQNNIMVEDVAQT 355

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
            G  NY+L+  +G R  + + 
Sbjct: 356 IGMINYELVCIVGKRIPRAFV 376


>gi|183597310|ref|ZP_02958803.1| hypothetical protein PROSTU_00561 [Providencia stuartii ATCC 25827]
 gi|188023331|gb|EDU61371.1| hypothetical protein PROSTU_00561 [Providencia stuartii ATCC 25827]
          Length = 360

 Score =  412 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/365 (30%), Positives = 186/365 (50%), Gaps = 19/365 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+ ++R  A+VK NAYG G  +++  L +  V  F V  ++E + 
Sbjct: 8   INRRALRHNLQRVRELAPHSRLIAIVKANAYGHGLTEVSTTLEDL-VDGFGVARLKEALA 66

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR     A I +L G        ++ +  +  VI  V QL                +++D
Sbjct: 67  LRERGITAPIVLLEGFFEHSDLPLLVEHQIDTVIHCVEQLAMLEA-TELANPIKVWMKLD 125

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  Q+A  F       K +     IISH   AD+P     + Q+  F+  +++
Sbjct: 126 TGMHRLGVLPQDAEAFYQRLQACKNVKHPINIISHFCQADEPELPTTANQIHCFKQFVAN 185

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILI 245
             G E S+A+S+GILL P+ H+   RPGI +YG + +   S     +Q+V+T ++ +I +
Sbjct: 186 KAG-EKSIAASAGILLWPDAHYDWVRPGIIMYGASPQEGTSAEHFGLQSVMTLKSTLIAV 244

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AG+ V YG      RD+ + V AIGY DGYP +              G    + G 
Sbjct: 245 REHAAGQCVGYGATWCSQRDTRLGVVAIGYGDGYPRSA-----------PSGTPVLVNGR 293

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI+G+++MDM   D+  + + +VGD + ++G  + ++++A  +G  NY+LL ++ +R 
Sbjct: 294 KVPIVGRVSMDMITVDLGPNANDKVGDEVILWGKSLPVEEIAAQTGIINYELLTKLTSRV 353

Query: 366 AKFYT 370
              Y 
Sbjct: 354 VMEYV 358


>gi|302392182|ref|YP_003828002.1| alanine racemase [Acetohalobium arabaticum DSM 5501]
 gi|302204259|gb|ADL12937.1| alanine racemase [Acetohalobium arabaticum DSM 5501]
          Length = 375

 Score =  412 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/380 (27%), Positives = 173/380 (45%), Gaps = 24/380 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N  + ++++L  ++ N   + A  S +    AVVK +AYG G   +A A   AG     V
Sbjct: 6   NRPVWVEVNLENIRFNLKQIRARVSADTLVMAVVKADAYGHGAVPVARAAVEAGADRLAV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
              EEGV+LR    +  I +L  + P Q  ++    LIP +S +       ++       
Sbjct: 66  GLPEEGVQLRNAGFEVPIQILGEVLPEQIPLLAKYGLIPTVSKLETAVELERINAQLESR 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L+VDTG  RLG+   E + F     +    +L  +++H A AD+        Q ++
Sbjct: 126 QKIHLKVDTGMGRLGVKPDEVVGFAQKLSSFPHLELEGLLTHFATADEADKEYTRQQWQK 185

Query: 182 FRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQT 234
           F   I   +  GI       A+S+ I+  P     L R GI LYG   +D++  S  +++
Sbjct: 186 FNYAIECLEAAGIRIPVKHCANSAAIIDLPEMELDLVRAGIMLYGLRPSDEVGDSLQLKS 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  +ARI+ +++   G  +SYG        + IA   +GYADGY   LS          
Sbjct: 246 VLNWKARIVYLKEVDKGCGISYGATYTTADKAEIATIPLGYADGYFRALSN--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   I G   PI G++ MD  M D+T+   + VGD + + G     ++   ++A   
Sbjct: 297 --KGDVLINGRRAPIRGRVCMDQFMVDVTEIPGVSVGDEVILIGKQDDKEVTAMELADLV 354

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           GT NY+++ +I  R  + Y 
Sbjct: 355 GTINYEIISKITKRVPRIYV 374


>gi|257058805|ref|YP_003136693.1| alanine racemase [Cyanothece sp. PCC 8802]
 gi|256588971|gb|ACU99857.1| alanine racemase [Cyanothece sp. PCC 8802]
          Length = 403

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 174/379 (45%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++I+  AL +N   +  L S      AVVK +AYG G  K+A    +AG     +
Sbjct: 24  RQRAWVEINQQALIHNVAEIKGLLSPKTALMAVVKADAYGHGAIKVAQTALDAGANGLAI 83

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGV 120
            ++ EG++LR     A I +L  I  P +   I    L P + +  Q   +S  L   G 
Sbjct: 84  ATLGEGIELREAGITAPILILGAINTPEEIAAIAQWQLQPTLCNPQQALIFSGTLSKLGQ 143

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + P  L++DTG +RLG    +A DF          +++ I SHLA ADDP       Q  
Sbjct: 144 TLPVHLKLDTGMSRLGTPWHQATDFVRLVQQLPYLKIATIYSHLATADDPDRSEMERQHR 203

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233
           RF+  I+  K           A+S+  L+ PN H+ L R G++LYG     +      ++
Sbjct: 204 RFKQAIAQLKSHGLPLPPLHFANSAATLVNPNLHYDLVRVGLALYGLYPAPHLRSFADLK 263

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +A++  ++    G  VSYG Q    R   +AV  IGYADG P  LS         
Sbjct: 264 PVLQVKAKVTQVKTIPPGTGVSYGYQFVSDRTMDVAVVGIGYADGVPRNLSNRL------ 317

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I+G  V  +G ITMD  M D++   +++VG+ + + G D    I  DD A  
Sbjct: 318 -----EVLIRGQRVRQIGAITMDQLMLDVSAIPNLQVGEVVTLIGKDGDQEITADDWANK 372

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT ++++L     R  + 
Sbjct: 373 LGTISWEILCGFKHRLPRI 391


>gi|163749309|ref|ZP_02156558.1| alanine racemase [Shewanella benthica KT99]
 gi|161331028|gb|EDQ01954.1| alanine racemase [Shewanella benthica KT99]
          Length = 358

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 183/370 (49%), Gaps = 21/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I   ALK+N   +  ++ +++  AVVK N YG G   +A  + +     F V  
Sbjct: 3   PFPRAEISCKALKHNLARLRQIAPSSKIMAVVKANGYGHGLLNVAQCIED--ADGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR     A++ +L G   P     +   ++  V+ +  QL    +  S      
Sbjct: 61  LEEAIALRDGGVTAKLILLEGCFRPVDLITLVMNDIETVVHNETQLEMLEQA-SLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG + ++            ++ +   ++SH ACAD+P +     QL +F
Sbjct: 120 VWLKLDTGMHRLGFTPEQFEQIYARLQACPQVVKPIKLMSHFACADEPDNPYTQEQLNKF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
             L+ +  G + +LA+S+G L  P+ H    RPGI+LYG +     + K+H +Q  +   
Sbjct: 180 NKLVRNLPG-DTTLANSAGTLYWPDSHKDWVRPGIALYGVSPVTGDLGKNHGLQPAMELI 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R+  AGE V YG   +   D+ + + AIGY DGYP            +   G  
Sbjct: 239 SQLIAVREHKAGEPVGYGCYWRAKADTKLGIVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G +VPI+G+++MDM   D+    S  +GD   ++G  + ++ VA   GT  Y+L+ 
Sbjct: 288 VWVNGRLVPIVGRVSMDMLTVDLGSDSSDSIGDEAILWGSALPVEVVAEHIGTIAYELVT 347

Query: 360 RIGTRYAKFY 369
           ++  R A  Y
Sbjct: 348 KLTPRVA-VY 356


>gi|317121110|ref|YP_004101113.1| alanine racemase [Thermaerobacter marianensis DSM 12885]
 gi|315591090|gb|ADU50386.1| alanine racemase [Thermaerobacter marianensis DSM 12885]
          Length = 394

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 104/379 (27%), Positives = 164/379 (43%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +++DL A+ +N  ++  L+  A+  AVVK + YG G   +A      G +   V  
Sbjct: 11  RPTWVEVDLDAIAHNVQTLQRLAAPAQLMAVVKADGYGHGAVMVARTALAHGARRLAVAV 70

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHP 123
           VEEGV LR       I V+    P Q  +    +L   +SS              G    
Sbjct: 71  VEEGVHLRQSAIACPILVMGWTPPWQYSLALRYDLELAVSSEDEARALAEAARREGRKVR 130

Query: 124 YALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             L+VDTG  RLGL        +           ++  + +HLA ADDP + +   QL R
Sbjct: 131 VHLKVDTGMGRLGLRWDHPRLAETAARIAGLGGLEVVGVFTHLATADDPEAPLTEDQLAR 190

Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQT 234
           F  ++        + +    A+S+ +L  P   + L RPGI+LYG         +  ++ 
Sbjct: 191 FARIVHALDERGLRPLLRHAANSAALLRLPGARYDLVRPGIALYGLEPFPGAVAAFGLRP 250

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + R+ L+++   G  +SYG      R S IA   +GYADG    LS          
Sbjct: 251 ALAWKTRVALVKEVPPGTPISYGATFVTRRRSRIATLPVGYADGLRRALSNR-------- 302

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G+  + G   PI+G++ MD  M D+TD+  + VGD + + G      I  D++A   
Sbjct: 303 ---GQVLVGGRRAPIVGRVCMDQVMVDVTDAGPVAVGDEVVLIGRQGDQQITADEMAGWM 359

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y+++  IG R  + Y
Sbjct: 360 DTIGYEVVTGIGRRVPRIY 378


>gi|84393171|ref|ZP_00991935.1| alanine racemase [Vibrio splendidus 12B01]
 gi|84376223|gb|EAP93107.1| alanine racemase [Vibrio splendidus 12B01]
          Length = 358

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 173/367 (47%), Gaps = 20/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL AL++N + + + +   +  +VVK N YG G   IA    N+    F V  +EE 
Sbjct: 6   ASIDLNALEHNLNQIKSKAPQCKVMSVVKANGYGHGLLHIAKHSKNS--DAFGVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G +  G   I+   N+  V+    QL+               L+
Sbjct: 64  LQLRAGGIVKPILLLEGFYSSGDLPILVTNNIQTVVHCEEQLSALENA-DLETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VD+G +RLG+  ++  +F         + +    +SH  CAD+        Q E F +L 
Sbjct: 123 VDSGMHRLGVRPEQYQNFVERLHQCANVAKPLRYMSHFGCADELDRATTVEQTELFLSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARII 243
              +G E SLA+S+G+L  PN H    RPGI  YG +   +KS      + V+T  + +I
Sbjct: 183 DGCEG-ERSLAASAGLLAWPNSHLDWVRPGIISYGVSPFADKSAQELGFKPVMTLTSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YG      RD+ + V AIGY DGYP                G   F+ 
Sbjct: 242 AVRDVKAGESVGYGANWTSERDTKVGVIAIGYGDGYPRMAPN-----------GTPVFVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +VGD   ++G D+  ++VA   GT  Y+L+ ++ +
Sbjct: 291 GRKVPIAGRVSMDMLTVDLGPDAADKVGDEATLWGKDLPSEEVAEHIGTIAYELVTKLTS 350

Query: 364 RYAKFYT 370
           R A  Y 
Sbjct: 351 RVAMEYV 357


>gi|326423831|ref|NP_760315.2| alanine racemase [Vibrio vulnificus CMCP6]
 gi|34098535|sp|Q8DCL0|ALR1_VIBVU RecName: Full=Alanine racemase 1
 gi|319999201|gb|AAO09842.2| alanine racemase [Vibrio vulnificus CMCP6]
          Length = 358

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/365 (29%), Positives = 173/365 (47%), Gaps = 20/365 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL++N   +   + +++  AVVK N YG G   +A      G   F V  +EE ++
Sbjct: 8   IDLVALQHNLQLIKQQAPHSKLMAVVKANGYGHGLRHVAKHAV--GADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G +  G   ++   N+  V+    QL                L++D
Sbjct: 66  LRACGVVKPILLLEGFYSSGDLPVLVTNNIQTVVHCEEQLRDLENA-ELETPVVVWLKID 124

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLG+  ++   F         + +    +SH  CAD+ ++ +   Q+E F +L   
Sbjct: 125 SGMHRLGVRPEQYQAFVERLHQCPNVAKPLRYMSHFGCADEMNNEMTPKQIELFLSLTRG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILI 245
            KG E SLA+S+G+L       +  RPGI +YG +   +K+      + V+T ++ +I +
Sbjct: 185 CKG-ERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGYKPVMTLKSHLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE V YG      RD+ + V AIGY DGYP T              G    + G 
Sbjct: 244 RDVKAGESVGYGATWISERDTKVGVIAIGYGDGYPRTAPN-----------GTPVLVNGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI G+++MDM   D+    +  VGD   ++G D+  +DVA   GT  Y+L+ ++ +R 
Sbjct: 293 KVPIAGRVSMDMLTVDLGPDATDHVGDEAILWGADLPAEDVAQHIGTIAYELVTKLTSRV 352

Query: 366 AKFYT 370
              Y+
Sbjct: 353 EMSYS 357


>gi|260767143|ref|ZP_05876087.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972]
 gi|260617864|gb|EEX43039.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972]
 gi|315181333|gb|ADT88247.1| alanine racemase, biosynthetic [Vibrio furnissii NCTC 11218]
          Length = 364

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 175/374 (46%), Gaps = 20/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   + N++  AVVK N YG G   +A      G   F
Sbjct: 1   MNYMKAATACINLDALRHNLQQIKQQAPNSKLMAVVKANGYGHGLRHVAKHAV--GADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G +  G   ++   N+  V+    QL          
Sbjct: 59  GVARIEEALQLRASGVVKPILLLEGFYSQGDLPVLVTNNIQTVLHCEEQLQALESA-ELE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++   F         + +    +SH  CAD+      + Q
Sbjct: 118 TPVVVWLKIDSGMHRLGVRPEQYAQFVARLQACNNVAKPLRYMSHFGCADELDKSTTTEQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
           +E F +L +  +G E S+A+S+G+L  P    +  RPGI +YG +    K+      Q V
Sbjct: 178 IELFLSLTNGCEG-ERSMAASAGLLAWPQSQMEWVRPGIIMYGVSPFAEKNAQQLGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R   AGE V YG      RD+ I V AIGY DGYP T             
Sbjct: 237 MTLKSHLIAVRDVKAGESVGYGATWVSERDTKIGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G +VP+ G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y
Sbjct: 287 -GTPVVVNGRVVPLAGRVSMDMLTVDLGPDARDNVGDEAILWGSELPVEEVASHIGTLGY 345

Query: 356 DLLVRIGTRYAKFY 369
           +L+ ++ +R    Y
Sbjct: 346 ELVTKLTSRVDMSY 359


>gi|260773674|ref|ZP_05882590.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14]
 gi|260612813|gb|EEX38016.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14]
          Length = 365

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 177/374 (47%), Gaps = 20/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +  +  IDL AL+ N   +   + +++  AVVK N YG G  ++A    +     F
Sbjct: 1   MNYMKAAKASIDLQALQYNLQRIKQQAPSSKVMAVVKANGYGHGSCQVARYAQD--ADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  ++E ++LR       I +L G +  G   ++   N+  V+    QL    +     
Sbjct: 59  GVARIQEALQLRANGIVKPILLLEGFYSAGDLPVLMTNNIQTVVHCEEQLQALERAQ-LD 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG+  ++  +F         + +    +SH  CAD+ +S +   Q
Sbjct: 118 TPVSVWLKIDSGMHRLGVRPEQHAEFVERLHRCPNVAKPLRYMSHFGCADELNSPITRQQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235
           +E F +L    KG E SLA+S+G+L  P       RPGI LYG +   ++       + V
Sbjct: 178 IELFLSLTEGCKG-ERSLAASAGLLAWPESQLDWVRPGIILYGVSPFAHQDAQAMGYRPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A +I +R+  AGE + YG      R++ I V AIGY DGYP T             
Sbjct: 237 MTLTAPLIAVREVKAGESIGYGALWTAQRETKIGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G +VP+ G+++MDM   D+       VGD   ++G D+ ++ VA   GT  Y
Sbjct: 287 -GTPVLVNGRIVPMAGRVSMDMLTVDLGPESQDNVGDEAILWGQDLPVERVAEHIGTVGY 345

Query: 356 DLLVRIGTRYAKFY 369
           +L+ ++ +R    Y
Sbjct: 346 ELVTKLTSRVEMHY 359


>gi|148981621|ref|ZP_01816478.1| alanine racemase [Vibrionales bacterium SWAT-3]
 gi|145960806|gb|EDK26141.1| alanine racemase [Vibrionales bacterium SWAT-3]
          Length = 358

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 178/369 (48%), Gaps = 24/369 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL+AL++N   + + +   +  +VVK N YG G   IA    N+    F V  +EE 
Sbjct: 6   ASIDLSALEHNLRQIKSKAPQCKVMSVVKANGYGHGLLHIAKHSKNS--DAFGVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--A 125
           ++LR       + +L G + PG   I+   N+  V+    Q    S L +  +  P    
Sbjct: 64  LQLRAGGIVQPVLLLEGFYSPGDLPILVTNNIQTVVHCEEQ---LSALENSVLESPVVVW 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G +RLG+  ++  DF         + +    +SH  CAD+        Q E F +
Sbjct: 121 LKVDSGMHRLGVRSEQYKDFVERLHQCPNVAKPLRYMSHFGCADELDRTTTVEQTELFLS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEAR 241
           L    +G E SLA+S+G+L  P+ H    RPGI  YG +  ++KS        V+T  + 
Sbjct: 181 LTDGCEG-ERSLAASAGLLAWPDSHLDWVRPGIISYGVSPFVDKSAQELGFMPVMTLTSH 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R   AGE V YGG     RD+ + V AIGY DGYP T              G   F
Sbjct: 240 LIAVRDVKAGESVGYGGNWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVF 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+      +VGD   ++G ++  ++VA   GT  Y+L+ ++
Sbjct: 289 VNGRKVPIAGRVSMDMLTVDLGPDAQDKVGDEATLWGKELPSEEVAEHIGTIAYELVTKL 348

Query: 362 GTRYAKFYT 370
            +R A  Y 
Sbjct: 349 TSRVAMEYV 357


>gi|315122242|ref|YP_004062731.1| alanine racemase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495644|gb|ADR52243.1| alanine racemase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 348

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 279/348 (80%), Positives = 307/348 (88%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           MN LSG ARTAAVVKDNAYGLG EKIA  LYN+GVQDFFV  V EGVKLR Y P+A+IFV
Sbjct: 1   MNVLSGCARTAAVVKDNAYGLGFEKIAQTLYNSGVQDFFVAHVGEGVKLRAYVPKAKIFV 60

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142
           LYGIHPG+EKI+FD NLIPVISS  QLTFY KLMS G SHPYALQVDTGFNRLGLSLQEA
Sbjct: 61  LYGIHPGEEKILFDANLIPVISSSQQLTFYLKLMSNGFSHPYALQVDTGFNRLGLSLQEA 120

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGI 202
           L+F  N  NKK  +LSLI+SHLAC++DP S +NS QLE+F TL+  YKGIEASLASS+GI
Sbjct: 121 LNFAKNFSNKKSDKLSLIMSHLACSEDPVSLMNSSQLEQFLTLMKSYKGIEASLASSAGI 180

Query: 203 LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262
           LLG NYHFQLTRPGISLYGGT  INK +PMQTVVTAEARIILIR+A AGE++SYGGQKKL
Sbjct: 181 LLGENYHFQLTRPGISLYGGTPAINKLNPMQTVVTAEARIILIREAAAGEVISYGGQKKL 240

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
            R+SLIAVAAIGYADGYPLTLSG+D EH+ + F GGKGFIKGYMVPILGKITMD+TMFDI
Sbjct: 241 KRNSLIAVAAIGYADGYPLTLSGIDLEHNQAQFPGGKGFIKGYMVPILGKITMDITMFDI 300

Query: 323 TDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           TDS+ IE GDYI++FGP+IKLDDVALAS TTNYDLLVRIGTRYA+FYT
Sbjct: 301 TDSIGIEAGDYIEVFGPNIKLDDVALASRTTNYDLLVRIGTRYARFYT 348


>gi|125975179|ref|YP_001039089.1| alanine racemase [Clostridium thermocellum ATCC 27405]
 gi|256003157|ref|ZP_05428149.1| alanine racemase [Clostridium thermocellum DSM 2360]
 gi|281418399|ref|ZP_06249418.1| alanine racemase [Clostridium thermocellum JW20]
 gi|125715404|gb|ABN53896.1| alanine racemase [Clostridium thermocellum ATCC 27405]
 gi|255992848|gb|EEU02938.1| alanine racemase [Clostridium thermocellum DSM 2360]
 gi|281407483|gb|EFB37742.1| alanine racemase [Clostridium thermocellum JW20]
 gi|316939345|gb|ADU73379.1| alanine racemase [Clostridium thermocellum DSM 1313]
          Length = 391

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 100/380 (26%), Positives = 170/380 (44%), Gaps = 27/380 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +++L  + +N   +  +         VVK +AYG G  +IA  L   GV    V+ 
Sbjct: 9   RAWAEVNLDNIAHNVKEIRRIVDKKVEIMGVVKADAYGHGVMEIARTLLENGVTRLAVSM 68

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           ++E ++LR    +  I +L    P + + I   ++   + S       S+       +  
Sbjct: 69  LDEAIQLRQNGIKVPILILSYTDPVRAEEIVLNDVTQTVFSHDLAEALSEAAVKHHRNVK 128

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++DTG  R+G      A+             +  + +H A AD+       +Q ERF
Sbjct: 129 IHIKIDTGMTRVGFMPGYSAVKNVVQISKLPGIIIEGLFTHFASADEADKSYTYMQFERF 188

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQT 234
            +++     I        + +S+ ++  P  H  + RPGI+LYG             ++ 
Sbjct: 189 MSIVGELNRIGVYIPVKHVCNSAALIEFPEMHLNMVRPGIALYGLYPSDEVDKTKIDLRP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ +A +IL++       +SYG   K +R+S IA   IGYADGY   L+G         
Sbjct: 249 AMSLKANVILVKDVEKDTFISYGRIFKTSRNSRIATIPIGYADGYTRLLTG--------- 299

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALA 349
              GK  + G + PI+G+I MD  M DITD    ++VGD   + G     +IK++D+A +
Sbjct: 300 --KGKVLLNGQLAPIVGRICMDQCMVDITDIEGDVKVGDEAVLIGKQKDNEIKVEDLAKS 357

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+L+  IG R  + Y
Sbjct: 358 VGTINYELVSIIGKRIPRVY 377


>gi|229085084|ref|ZP_04217335.1| Alanine racemase [Bacillus cereus Rock3-44]
 gi|228698209|gb|EEL50943.1| Alanine racemase [Bacillus cereus Rock3-44]
          Length = 391

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 98/376 (26%), Positives = 170/376 (45%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++++L A+K+N           N    A VK NAYG G  ++A A   AGV    V  V+
Sbjct: 11  VEVNLDAIKHNVREFKKRVNDENMTMMAAVKANAYGHGAVEVAKAAIEAGVNQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125
           EG++LR       I +L        K   + +++  +  +  L    +     G      
Sbjct: 71  EGIELREAGISVPILILGYTPVEAAKDAIEYDIMMTVYRIEDLKGIDEVAKRLGKKARIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F     N K  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVAPFLEELKNMKHIEMEGVFTHYSTADEIDKTYTNMQTNLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   L     ++S+G +   N    + R GI +YG       +H +   Q  ++
Sbjct: 191 VTTAKEMGIHLPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSQEVAHTVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVATGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
           G   I G  VP+LG++ MD  M D+T+++ ++VGD +  +G     +I ++++A   GT 
Sbjct: 300 GHALINGVRVPVLGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQGEEEIPVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|222148127|ref|YP_002549084.1| alanine racemase [Agrobacterium vitis S4]
 gi|221735115|gb|ACM36078.1| alanine racemase [Agrobacterium vitis S4]
          Length = 387

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 186/366 (50%), Positives = 243/366 (66%), Gaps = 2/366 (0%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            LR+ IDL AL +NW  M   SG AR  AVVK + YG+G E     LYNAG +DFFV   
Sbjct: 18  PLRVTIDLQALADNWRDMAKRSGKARAGAVVKADGYGIGIEDSGQTLYNAGARDFFVALP 77

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            EG  LR Y P ARIFVL GI  G E + F+ +L+PVI+S  QL F+ + ++    HP A
Sbjct: 78  SEGATLRTYAPDARIFVLSGIWEGMEPLFFEHDLVPVIASEEQLAFWMRTVADQGDHPCA 137

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VDTGFNRLGLS+ +AL    +          LI+SHLACADDPSS +N  QL+ F  +
Sbjct: 138 LHVDTGFNRLGLSMDDALFLATDVSRPASFSPVLILSHLACADDPSSPMNQKQLQAFHQV 197

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            + ++GIE+SL++S+G LLGP+YHF LTRPGI+LYGG       +PM+ VV AEARI+ I
Sbjct: 198 SAAFEGIESSLSASAGTLLGPDYHFDLTRPGIALYGGEAVTGLPNPMRPVVKAEARILQI 257

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+A  GE VSYG   +LTR+S +AVA++GYADGY   LSG  +    +   G  G I GY
Sbjct: 258 RQARNGETVSYGATCQLTRESRLAVASVGYADGYLRNLSGHGTALRDTGSPGAYGSIAGY 317

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VP++G+ITMDMT+FD++D     I  GDYI++FGP++ +DDVA A+GT  Y++L  +G 
Sbjct: 318 QVPVVGRITMDMTIFDVSDVPEKAIAAGDYIELFGPNMPIDDVARAAGTIGYEMLTGLGL 377

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 378 RYERHY 383


>gi|75906615|ref|YP_320911.1| alanine racemase [Anabaena variabilis ATCC 29413]
 gi|75700340|gb|ABA20016.1| alanine racemase [Anabaena variabilis ATCC 29413]
          Length = 395

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 174/381 (45%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++   ++IDL AL +N   +   LS   +  AVVK +AYG G   +A     AG     V
Sbjct: 23  SQRAWVEIDLEALSHNVQQLKQFLSPRTQLMAVVKADAYGHGAVTVAQTALQAGASCLGV 82

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118
            +V EG++LR    QA I +L   H P Q + I    L P I S  Q   +S  +     
Sbjct: 83  ATVPEGIQLREAGMQAPILILGATHTPEQIQAIAQWQLQPTIGSPKQALIFSNTLETIQH 142

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               P  +++DTG +RLG + Q+A +F           ++ + SHLA AD P   +   Q
Sbjct: 143 DSPVPVHIKLDTGMSRLGTNWQQAGEFVQLVERLPHLNIASVYSHLATADSPDPGIMEEQ 202

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
             RF   I+  K +        LA+S+  L  P  H+ + R G+++YG      + K   
Sbjct: 203 YRRFEEAIAQIKALSIKIPCLHLANSAATLADPRLHYDMVRVGLAVYGLYPAPHLQKKIS 262

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  +AR+  ++   AG  VSYG Q     +  +AV  IGYADG P  LS       
Sbjct: 263 LKPVIQVQARVTHVKTIAAGTGVSYGHQFIAPHEMRLAVVGIGYADGIPRNLSNKM---- 318

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                  +  I+G  VP +G ITMD  M D++    ++ G+ + + G      I  DD A
Sbjct: 319 -------QVLIRGQRVPQIGAITMDQLMIDVSALPDLQEGEIVTLLGKQGKEKITADDWA 371

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
               T ++++L     R  + 
Sbjct: 372 EELNTISWEILCGFKHRLPRV 392


>gi|218437857|ref|YP_002376186.1| alanine racemase [Cyanothece sp. PCC 7424]
 gi|218170585|gb|ACK69318.1| alanine racemase [Cyanothece sp. PCC 7424]
          Length = 403

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 177/379 (46%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++ID  A+ +N H++   LS +    AVVK +AYG G  K+A     AG     +
Sbjct: 25  RQRAWIEIDHHAIAHNVHAIKQILSPSTELMAVVKADAYGHGALKVAQTALQAGASWLAI 84

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
            ++ EG++LR     A I +L  I  P +   I    L P + +  Q   +S+ L   G 
Sbjct: 85  ATLGEGIELREAGIAAPILILGAINTPEEIATIAHWKLQPTLCNPQQALIFSETLSKIGQ 144

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + P  L++DTG +RLG    EA DF          ++  + SHLA ADDP   +  +Q +
Sbjct: 145 TLPVHLKIDTGMSRLGTIWHEAADFVQLVHQLPNLKMKSVYSHLATADDPDPTIMRLQHQ 204

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQ 233
           RF   IS  K  GI       A+S+  L   + H+ L R G+ LYG     +   +  ++
Sbjct: 205 RFEKAISEIKAQGITPPRLHFANSAATLSDRSVHYDLVRVGLGLYGLYPAPHLRSTVDLK 264

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +ARI  ++    G  VSYG Q    R+  IAV  IGYADG    LS         
Sbjct: 265 PVLQVKARITQVKTIPPGTGVSYGYQFISDRELRIAVVGIGYADGVSRNLSNRL------ 318

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I+G  V  +G ITMD  M D+++   ++ G+ + + G D    I  D+ A  
Sbjct: 319 -----EVLIRGKRVRQIGAITMDQLMLDVSNIPHLQAGEVVTLIGKDQDEEITADEWATQ 373

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT ++++L     R  + 
Sbjct: 374 LGTISWEILCGFKHRLPRV 392


>gi|258516878|ref|YP_003193100.1| alanine racemase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780583|gb|ACV64477.1| alanine racemase [Desulfotomaculum acetoxidans DSM 771]
          Length = 373

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 168/377 (44%), Gaps = 26/377 (6%)

Query: 8   RLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +I+L+A+ +N   +  ++   A+  AVVK +AYG G  + A    + GV    V+ V 
Sbjct: 7   WAEINLSAIAHNIQELRRIAAPGAQLMAVVKADAYGHGAVETARIALDNGVVILAVSRVS 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           EGV LR       + VL  + PG+       +L   + ++ Q    S +    G+     
Sbjct: 67  EGVALREAGIDCPVLVLGYLSPGEVLFSLKNDLSHTVFNMQQAEILSDIATKAGIKAKVH 126

Query: 126 LQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           ++++TG  RLG    Q  ++           ++  I +H A +D         QL RF+ 
Sbjct: 127 IKIETGMGRLGFEACQAVVEQVIAVTRLSHLKVDGIFTHFAVSDIIDKSYTRQQLFRFQE 186

Query: 185 LISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVV 236
           ++     KG++      A+S+ I+  P+ H  + R GI++YG              Q  +
Sbjct: 187 VLRELHRKGVDIQLKHAANSAAIIDMPDTHLNMVRAGIAMYGLYPSEGVDKSRIVLQPAM 246

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + + ++  I++  AG  VSYG      R +LIA   +GYADGY   LS            
Sbjct: 247 SFKTQVGHIKRVPAGYPVSYGCTYITRRPTLIATLPVGYADGYSRLLSSR---------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             +  I G   P++G++ MD  M D+       +GD + ++G      + +++VA   GT
Sbjct: 297 -AEVLIHGQRAPVVGRVCMDQCMIDVGHINDPLIGDEVVLWGQQGESSLPVEEVAEKMGT 355

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+L+  +  R  + Y
Sbjct: 356 INYELVCMVNVRVPRVY 372


>gi|170755879|ref|YP_001783035.1| alanine racemase [Clostridium botulinum B1 str. Okra]
 gi|169121091|gb|ACA44927.1| alanine racemase [Clostridium botulinum B1 str. Okra]
          Length = 386

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 175/384 (45%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N   +  +IDL  L++N   +  + GN     V+K NAYG G  +IAP L   GV  
Sbjct: 1   MFRNLRAVWAEIDLDNLQHNLRQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  + E ++LR+   +  I +L         ++ D ++   + S       SK+    
Sbjct: 61  LAVAVLSEAMELRMSGVKESIMILGYTPGALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120

Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  + VDTG  R+G    +E+++  +        ++  + SH + AD+        
Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIKIEGLFSHFSSADELDKDYTLY 180

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229
           Q+ ++   I+  +          +A+S+ I+   N H    R GI +YG       +  +
Sbjct: 181 QMNKYNEFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRDN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +  I+ I+K  +GE +SYG   K  R+S+IA   IGYADGY   LS     
Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   GK  + G + P++G++ MD  M D+T   +++VGD + I G +       ++
Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAEN 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y+++  +  R  + Y
Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373


>gi|163803116|ref|ZP_02197000.1| alanine racemase [Vibrio sp. AND4]
 gi|159173108|gb|EDP57940.1| alanine racemase [Vibrio sp. AND4]
          Length = 358

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 102/364 (28%), Positives = 174/364 (47%), Gaps = 20/364 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+AL++N   +   + N++   VVK N YG G   +A    +     F V  +EE ++
Sbjct: 8   IDLSALQHNLQRVKQQAPNSKVMVVVKANGYGHGLRHVAKHATH--ADAFGVARIEEALQ 65

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G +  G   ++   N+  V+    QL    +           L++D
Sbjct: 66  LRACGVVKPILLLEGFYSLGDLPVLVTNNIQTVVHCEEQLAALEQA-DLETPVVVWLKID 124

Query: 130 TGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLG+  ++  +F         + +    +SH  CAD+  + + + Q++ F +L + 
Sbjct: 125 SGMHRLGVRPEQYDEFISRLKECPNVAKPLRYMSHFGCADELDNKITTEQIDLFMSLTAG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILI 245
            +G E SLA+S+G+L  P       RPGI +YG +    K  +    + V+T ++ +I +
Sbjct: 185 CQG-ERSLAASAGLLAWPQSQLDWVRPGIIMYGVSPFGEKTAQDMGYKPVMTLKSHLIAV 243

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G  V YGG     RD+ + V A+GY DGYP T              G    + G 
Sbjct: 244 RDVKKGASVGYGGIWTSERDTKVGVIAVGYGDGYPRTAPN-----------GTPVLVNGR 292

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI G+++MDM   D+    + +V D   ++G D+ +++VA   GT  Y+L+ ++ +R 
Sbjct: 293 KVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKDLPVEEVASHIGTIGYELVTKLTSRV 352

Query: 366 AKFY 369
              Y
Sbjct: 353 EMEY 356


>gi|187777116|ref|ZP_02993589.1| hypothetical protein CLOSPO_00661 [Clostridium sporogenes ATCC
           15579]
 gi|187774044|gb|EDU37846.1| hypothetical protein CLOSPO_00661 [Clostridium sporogenes ATCC
           15579]
          Length = 402

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 102/388 (26%), Positives = 169/388 (43%), Gaps = 30/388 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    ++I+L  L +N   +  ++ +    +VVK +AYG G  +IA  L   G     V 
Sbjct: 5   SRPAWIEINLDNLIHNMKEIRRVAKSKEIISVVKADAYGHGASEIASLLLENGANRLAVA 64

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE--------KIIFDTNLIPVISSVPQLTFYS-K 114
            + E ++LR     A I +L       +        + I    L   +SS       S K
Sbjct: 65  VLSEALELRNSGITAPIIILGYTPLRYDEKTICNNAETIIKNGLEVSVSSYKYAEQLSKK 124

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               G      + +DTG  RLG    +E L+  +            + SH + AD+ +  
Sbjct: 125 AQQLGKDVKIHVNIDTGMGRLGFLPTEENLEKIYQISKLPNIIFEGLFSHFSTADEKNKD 184

Query: 174 VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227
             + Q ++F       K          +A+S+ ++  P  H    RPGI+ YG       
Sbjct: 185 YTNEQFKKFLDFYYKLKDKNVKINIKHIANSAALIDLPYTHLDAIRPGIAQYGYYPSSEV 244

Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             ++  ++  +T +  I+L++   +GE +SYG + +  R+S IAV  IGYADGY   LS 
Sbjct: 245 NHENINLRPTMTLKTNIVLVKDIKSGESISYGRRFRTIRNSKIAVLPIGYADGYERELS- 303

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDI 341
                        +  + G   PI+G+ITMDM M D+TD   ++VGD + + G      I
Sbjct: 304 -------DNVYKTQVIVNGRRAPIVGRITMDMCMIDVTDVGDVKVGDEVILIGECNDEKI 356

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            ++D+A    T  Y++  RI  R  ++Y
Sbjct: 357 AVEDIADLLHTIPYEVTSRISKRIPRYY 384


>gi|310829658|ref|YP_003962015.1| alanine racemase [Eubacterium limosum KIST612]
 gi|308741392|gb|ADO39052.1| alanine racemase [Eubacterium limosum KIST612]
          Length = 399

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 101/378 (26%), Positives = 174/378 (46%), Gaps = 22/378 (5%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++     +I L  L  N   +   +   AR   VVK +AYG G   +A  L + GV    
Sbjct: 12  AHRPTWAEIKLENLLFNLEQIKKAAGPEARIMGVVKADAYGHG-VDVAELLQDEGVPCLG 70

Query: 62  VTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCG 119
           V  ++E + LR        +F+L      Q   + + ++ P +  +      S   ++ G
Sbjct: 71  VAFLDEAIALRQKGIDRCDLFILGYTGADQIPELVEWDVTPGVYQLEFAQALSDYCVANG 130

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             HP  ++VDTG  R+G    EA +      +    ++  + +H A AD+       +QL
Sbjct: 131 SVHPVHIKVDTGMGRIGFRWDEAAEAVLKIADMPGIRIEGLYTHFATADEVDKDFTHLQL 190

Query: 180 ERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231
            R+  ++     KG+E     + +S+ I+      F + RPGI LYG         +   
Sbjct: 191 TRYAQVVKALSDKGVEIPLKHVENSAAIIDFDKTVFNMVRPGIILYGHYPSDEVKKEKLG 250

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ + RI+ I+   AG+ VSYG +     D +IA   +GYADGY   LSG      
Sbjct: 251 LKPVMSFKTRIVHIKTIHAGDTVSYGRKFTAEGDRVIATLPVGYADGYSRMLSG------ 304

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                G +  + G+  P++G I MD  M DIT    + + D +++FG ++ ++++A   G
Sbjct: 305 ----KGAEVLVNGHRAPVVGNICMDQCMVDITGLEGVSLYDEVELFGENLPVEELAEKLG 360

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y+LL  +  R  + Y
Sbjct: 361 TISYELLCMVNKRVPRVY 378


>gi|147676995|ref|YP_001211210.1| alanine racemase [Pelotomaculum thermopropionicum SI]
 gi|254802371|sp|A5D4I1|ALR_PELTS RecName: Full=Alanine racemase
 gi|146273092|dbj|BAF58841.1| alanine racemase [Pelotomaculum thermopropionicum SI]
          Length = 374

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 102/379 (26%), Positives = 162/379 (42%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            +  +I+L A+ +N   +  ++   A+  AVVK NAYG G E+++      G +   V  
Sbjct: 5   PVWAEINLRAIAHNIREIRRVTEPGAKVMAVVKANAYGHGAEEVSQTALAGGAEWLGVAR 64

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHP 123
           V EGV LR    +A + VL    P Q   +   NL   + +    L         G    
Sbjct: 65  VAEGVSLRQAGIEAPVLVLGYTTPEQAADVIRHNLSQTVYTRNAALFLAEAAAREGKRAR 124

Query: 124 YALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +VDTG  R+G L+   A+            ++  I +H A AD         Q ++F
Sbjct: 125 VHFKVDTGMGRIGWLAGPGAVREILELARLPQLEVEGIFTHFAAADAADKRYTLEQFQKF 184

Query: 183 RTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
             +I   +  G+E      A+S+ I+  P  H  + R GI LYG             ++ 
Sbjct: 185 IEMIDELQKNGLEFPLRHAANSAAIMELPGTHLDMVRAGIILYGLYPSDEVDRRRIDLRP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ +AR+  +++  AG  VSYG      R  +IA   +GYADGY   LS          
Sbjct: 245 AMSLKARVAHVKEVPAGFKVSYGCTYTTGRPGVIATLPLGYADGYSRLLS---------- 294

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G+  I G   P++G++ MD  M D++    ++ GD   + G      I  D+VA   
Sbjct: 295 -SKGEALIHGRRAPVVGRVCMDQVMVDVSGIPGVKAGDEAVLIGRQGGETISADEVAAKL 353

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++   +  R  + Y
Sbjct: 354 GTINYEVTCMVSGRVPRVY 372


>gi|262163859|ref|ZP_06031599.1| alanine racemase biosynthetic [Vibrio mimicus VM223]
 gi|262027839|gb|EEY46504.1| alanine racemase biosynthetic [Vibrio mimicus VM223]
          Length = 364

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 179/375 (47%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   + +++  AVVK N YG G   IA      G   F
Sbjct: 1   MNYMKAATAYINLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIARYAI--GADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G +  G   ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRASGVVKPILLLEGFYSQGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF +       + +    +SH  CAD+      + Q
Sbjct: 118 TPVMVWLKVDSGMHRLGVRPEQYRDFVNRLHQCVNVAKPLRYMSHFGCADELDKSTTAEQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V
Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 237 MTLKSHLIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+    +  VGD   ++G ++ +++VA   GT  Y
Sbjct: 287 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPEAADCVGDEAMLWGRELPVEEVAAHIGTLGY 345

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++ +R    Y+
Sbjct: 346 ELVTKLTSRVEMSYS 360


>gi|150399575|ref|YP_001323342.1| alanine racemase [Methanococcus vannielii SB]
 gi|150012278|gb|ABR54730.1| alanine racemase [Methanococcus vannielii SB]
          Length = 380

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 166/388 (42%), Gaps = 34/388 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +  +  +IDL A+KNN   +  ++  +++  AVVK NAYG G  +I+  +   G     V
Sbjct: 3   SHPIWAEIDLNAVKNNIKEIRRITNSDSQIMAVVKANAYGHGAVEISKVVLKNGADRLAV 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM------ 116
              +E ++LR    +  I V       +   +   ++I  + S+       K+       
Sbjct: 63  ARSKEAIELRNAGFKCPILVFGYNTIEEILELIKNDVILTVYSIEIAKDIQKIAKDIQKI 122

Query: 117 --SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                      L++DTG NRLG     + ++           ++  I +H A AD+    
Sbjct: 123 AKDIQKIAKVHLKIDTGMNRLGFIPDKKTINEILKISEFLNIEIEGIYTHFADADNSDKT 182

Query: 174 VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI-- 226
               Q  +F   ++  +  GI      +++S+ I+  P  H  + RPGI LYG       
Sbjct: 183 YTKKQFSKFMEFLTDLEDSGINIPIKHVSNSAAIIDHPETHLNMVRPGIILYGLYPSELV 242

Query: 227 -NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 ++ V++ +  I  ++    G  +SYG      + S IA   +GYADG+   L  
Sbjct: 243 QKDKINLEPVMSLKCLITHVKDVPRGTKISYGCTYITKKKSKIASIPLGYADGFTRMLKN 302

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
                       GK  + G   PI+G+I MD  M D+++   +++GD + +FG      +
Sbjct: 303 ------------GKVLVGGKRAPIVGRICMDQCMADVSNIDDVKIGDTVLVFGKHEKYTV 350

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +++++    T NY+L+  I  R  + Y
Sbjct: 351 PVEEISNELKTINYELVCMISNRVPRVY 378


>gi|313903544|ref|ZP_07836934.1| alanine racemase [Thermaerobacter subterraneus DSM 13965]
 gi|313466097|gb|EFR61621.1| alanine racemase [Thermaerobacter subterraneus DSM 13965]
          Length = 394

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 105/379 (27%), Positives = 167/379 (44%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +++DL A+ +N  ++  L+  A+  AVVK + YG G   +A      G +   V  
Sbjct: 11  RPTWVEVDLDAIAHNVQTLQRLAAPAQLMAVVKADGYGHGAVMVARTALAHGARRLAVAV 70

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHP 123
           VEEGV LR       I V+    P Q  +     L   +SS              G    
Sbjct: 71  VEEGVHLRQSAIACPILVMGWTPPWQYALALRYELELAVSSEEEARALAEAARRDGRKVR 130

Query: 124 YALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             +++DTG  RLGL   +    +           +++ + +HLA ADDP + +   QL R
Sbjct: 131 VHIKIDTGMGRLGLRWDQPRLAEVVARIAGLGGLEVAGVFTHLATADDPEAPLTEDQLGR 190

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQT 234
           F  ++     +G+       A+S+ +L  P   + L RPGI+LYG         +  +Q 
Sbjct: 191 FDRVLQALDERGLRPGLRHAANSAALLRLPGARYDLVRPGIALYGLEPFPGAVAAFGLQP 250

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + R+ L+++   G  +SYG      R S IA   +GYADG    LS          
Sbjct: 251 ALAWKTRVALVKEVPPGTPISYGATFVTRRRSRIATLPVGYADGLRRALSNR-------- 302

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALAS 350
              G+  + G  VPI+G++ MD  M D+TD+  + VGD + +     G  I  D++A   
Sbjct: 303 ---GQVLVGGRRVPIVGRVCMDQVMVDVTDAGPVAVGDEVVLIGRQGGEQITADEMAGWM 359

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y+++  IG R  + Y
Sbjct: 360 DTIGYEVVTGIGRRVPRIY 378


>gi|301059502|ref|ZP_07200415.1| alanine racemase [delta proteobacterium NaphS2]
 gi|300446397|gb|EFK10249.1| alanine racemase [delta proteobacterium NaphS2]
          Length = 372

 Score =  410 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 172/374 (45%), Gaps = 20/374 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R  ++L A+++N  +     G N +  AVVK + YG G  +++    ++G     V 
Sbjct: 9   RSTRAVVNLGAVEHNIAAAREKIGKNRKLMAVVKADGYGHGALEVSTKALSSGADCLGVA 68

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSH 122
             EE   LR     A I  L  I P +   + D  L   + S+      +    +  V  
Sbjct: 69  FPEEAEPLRKAGIDAPILALGLIQPDEAYKVIDLGLEQTVCSLELAEALNGAAGNASVKI 128

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VDTG  R+G+   + L++       K   L  I SH ACAD+  +   + Q+  F
Sbjct: 129 DVHIKVDTGMGRIGVLPHDLLEYCRKIRQLKHLNLKGIFSHFACADENDADFTNRQIRIF 188

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTV 235
              +      GI      LA+S+GIL  P  H+ L RPGI +YG   + +I +S  +   
Sbjct: 189 DQAVREMAASGISVPQKHLANSAGILAHPASHYDLVRPGIMIYGLYPSPEIARSVSLIPA 248

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +++I  +++      +SYG     +R ++IA   +GYADGY   LS           
Sbjct: 249 MTLKSKITQVKRVSRETPISYGRTYYTSRSAMIATLPVGYADGYNRRLSNRSF------- 301

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
                 I+G   P++G++ MDM MFD+T   ++  GD   +FG    +DD+A    T NY
Sbjct: 302 ----AIIRGERAPLVGRVCMDMCMFDVTAIKNVRPGDEAILFGESPTIDDIAKGLDTINY 357

Query: 356 DLLVRIGTRYAKFY 369
           +++  +G R  + Y
Sbjct: 358 EVVCAVGKRVPRIY 371


>gi|258625986|ref|ZP_05720851.1| alanine racemase [Vibrio mimicus VM603]
 gi|258581734|gb|EEW06618.1| alanine racemase [Vibrio mimicus VM603]
          Length = 375

 Score =  410 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 179/375 (47%), Gaps = 20/375 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   + +++  A VK N YG G   IA      G   F
Sbjct: 12  MNYMKAATAYINLDALQHNLQRVKQQAPHSKIMAAVKANGYGHGLRHIARYAL--GADAF 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 70  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 128

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF +       + +    +SH  CAD+      + Q
Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYRDFVNRLHQCANVAKPLRYMSHFGCADELDKSTTAEQ 188

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +    KS      Q V
Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI G+++MDM   D+    +  VGD   ++G ++ +++VA   GT  Y
Sbjct: 298 -GTPVVVSGRRVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGY 356

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ ++ +R    Y+
Sbjct: 357 ELVTKLTSRVEMSYS 371


>gi|218245760|ref|YP_002371131.1| alanine racemase [Cyanothece sp. PCC 8801]
 gi|218166238|gb|ACK64975.1| alanine racemase [Cyanothece sp. PCC 8801]
          Length = 403

 Score =  410 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 175/379 (46%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++I+  AL +N   +  L S      AVVK +AYG G  K+A    +AG     +
Sbjct: 24  RQRAWVEINQQALIHNVAEIKGLLSPKTALMAVVKADAYGHGAIKVAQTALDAGANGLAI 83

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
            ++ EG++LR     A I +L  I+  +E   I    L P + +  Q   +S  L   G 
Sbjct: 84  ATLGEGIELREAGITAPILILGAINTSEEIAAIAQWQLQPTLCNPQQALIFSDTLSKLGQ 143

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + P  L++DTG +RLG    +A DF          +++ I SHLA ADDP       Q  
Sbjct: 144 TLPVHLKLDTGMSRLGTPWHQATDFVRLVQQLPYLKIATIYSHLATADDPDRSEMERQHR 203

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233
           RF+  I+  K           A+S+  L+ PN H+ L R G++LYG     +      ++
Sbjct: 204 RFKQAIAQLKSHGLPLPPLHFANSAATLVNPNLHYDLVRVGLALYGLYPAPHLRSFADLK 263

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +A++  ++    G  VSYG Q    R   +AV  IGYADG P  LS         
Sbjct: 264 PVLQVKAKVTQVKTIPPGTGVSYGYQFVSDRTMDVAVVGIGYADGVPRNLSNRL------ 317

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I+G  V  +G ITMD  M D++   +++VG+ + + G D    I  DD A  
Sbjct: 318 -----EVLIRGQRVRQIGAITMDQLMLDVSAIPNLQVGEVVTLIGKDGDQEITADDWANK 372

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT ++++L     R  + 
Sbjct: 373 LGTISWEILCGFKHRLPRI 391


>gi|312793010|ref|YP_004025933.1| alanine racemase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180150|gb|ADQ40320.1| alanine racemase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 390

 Score =  410 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 162/379 (42%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            +  +IDL  L  N  ++   +    R  AVVK +AYG G  +I+  L   GV    V  
Sbjct: 9   RVWAEIDLDNLVYNLENIKKKILPQTRIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAI 68

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           ++E ++LR +     I +L        + + +  +   + +  Q  + S+     G    
Sbjct: 69  IDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSQAAQKIGKKAK 128

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
             ++VDTG  R+G     E++    N       +L  I SH + ADDP   H    Q  +
Sbjct: 129 IHIKVDTGMGRIGFLCCNESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDHFTHEQFMK 188

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F   +              +A+SS  +  P Y   + R G+ LYG      + +   ++ 
Sbjct: 189 FENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPSSSLKEHLSIKP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+    S          
Sbjct: 249 VMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------- 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
                  IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A   
Sbjct: 302 ----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGRQGKNEILADHLAEQI 357

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++     R  + Y
Sbjct: 358 GTINYEVVCSFSKRIPRVY 376


>gi|170079084|ref|YP_001735722.1| alanine racemase [Synechococcus sp. PCC 7002]
 gi|169886753|gb|ACB00467.1| alanine racemase [Synechococcus sp. PCC 7002]
          Length = 399

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 173/379 (45%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++ID  AL  N  ++   L+      AVVK +AYG G  K+A  +  AG     +
Sbjct: 30  RQRAWVEIDHQALAANIRALKDILAPQTALMAVVKADAYGHGAVKVAETVLKAGASWLAI 89

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120
            ++ EGV+LR     A I VL       + + I   +L P + ++ Q+T +   L   G 
Sbjct: 90  ATLGEGVELREAGITAPILVLGATNTTEEIEAIAHWDLQPTLCNLSQVTIFNEALARLGK 149

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + P  L++DTG +RLG   +EAL F           ++ I SH A ADDP       Q +
Sbjct: 150 TLPVHLKIDTGMSRLGTRWEEALPFVAAVHQAPHLNIASIYSHFATADDPDPTTMDQQHQ 209

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233
           RF+  I+  +       +  +++S+  L   + H+ L R G+S+YG     + S    ++
Sbjct: 210 RFQAAIAKLEQQGIPIPKRHISNSAATLHSRDLHYDLVRLGLSIYGVYPAPHLSPKVHLK 269

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +ARI  ++       VSYG +     D+  AV  IGYADG P  LS         
Sbjct: 270 PVLQVKARITQLKTLPPDTGVSYGHRFITATDTKTAVVGIGYADGVPRRLSN-------- 321

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                K  + G   P +G ITMD  M D++    ++VGD + + G      + +D  A  
Sbjct: 322 ---NLKVLVNGAFAPQIGAITMDQLMLDVSHLPDVQVGDVVTLIGTDHDQQLTVDQWANQ 378

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT ++++L     R  + 
Sbjct: 379 LGTISWEILCGFKHRLPRI 397


>gi|187933435|ref|YP_001885767.1| alanine racemase [Clostridium botulinum B str. Eklund 17B]
 gi|187721588|gb|ACD22809.1| alanine racemase [Clostridium botulinum B str. Eklund 17B]
          Length = 386

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 160/379 (42%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL A+  N  ++  L+ N    AVVK + YG G   + P L   G     V  
Sbjct: 6   RPVWAEIDLDAIAYNMRNIKKLAQNKDVIAVVKADCYGHGALDVVPTLLENGASRLAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           + E ++LR     A I +L        + + + ++   +  +      S L         
Sbjct: 66  LTEAIELRNNNITAPIMILGYTPEYLFEEVVNYDIEQTVYDLEYAKKLSHLAIKFNKKAK 125

Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    E A+      +N K   +  I +H + +D+      + Q  +F
Sbjct: 126 VHIAIDTGMGRIGFIPNEKAIKDIKKIYNLKGLDVIGIFTHFSTSDETDKEYTNEQFNKF 185

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
            + I     +        +++S  I+  P  +    R GI LYG          +  ++ 
Sbjct: 186 TSFIDMLSKVGVKIPIKHISNSGAIIDMPKTYLDSVRAGIILYGYYPSDEINKDNIKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +A +  +++      +SYG   K  R S+IA   IGYADGY   L+          
Sbjct: 246 ALTLKASLTRVQELDINSYISYGKTFKTERKSIIATLPIGYADGYSRLLA---------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
             G K  I G   PI+G+I MD  M D+TD   I VGD + I G D    +  +D+A + 
Sbjct: 296 -PGAKVIINGKFSPIIGRICMDQCMIDVTDIDDIHVGDEVIILGEDGNLKLTANDLAKSM 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  +  R  + Y
Sbjct: 355 GTINYEILCMLKYRIPRVY 373


>gi|241203930|ref|YP_002975026.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857820|gb|ACS55487.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 389

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 185/366 (50%), Positives = 246/366 (67%), Gaps = 2/366 (0%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DLTAL  NW  M   SG AR +AVVK +AYG+G E    ALY AG +DFFV +V+
Sbjct: 21  LRLTVDLTALTENWRDMARRSGAARASAVVKADAYGMGIEDAGEALYMAGARDFFVATVD 80

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV LRLY P+ARIFVL GI PG E+  FD +L+PVISS  QL F+  +++    +P AL
Sbjct: 81  EGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPVISSDEQLAFWMAVLADYGDYPCAL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTGFNRLGL + +A+    +          L++SHLACADDP+  +N  QLE F  + 
Sbjct: 141 HVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACADDPTHAMNRQQLESFHRVS 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG      ++PM+ V TAEARII +R
Sbjct: 201 AAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVSGMANPMRPVATAEARIIQVR 260

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE VSYG   +L R+S +A+A+ GYADGY  + S         V  GG+GFI G+ 
Sbjct: 261 SVAAGETVSYGRALQLRRESRLAIASAGYADGYMRSQSSGGVPLRQVVPQGGQGFIAGHK 320

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VP+ G+ITMD+T+FDITD     +  GDY+++FG ++ +DDVA ASGT  Y++L  +G R
Sbjct: 321 VPVAGRITMDLTIFDITDLPDNAVRAGDYVELFGKNMPVDDVARASGTIGYEILTSMGLR 380

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 381 HERRYV 386


>gi|312127105|ref|YP_003991979.1| alanine racemase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777124|gb|ADQ06610.1| alanine racemase [Caldicellulosiruptor hydrothermalis 108]
          Length = 390

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 161/379 (42%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            +  +IDL  L  N  ++   +       AVVK +AYG G  +I+  L   GV    V  
Sbjct: 9   RVWAEIDLDNLVYNLENIKKKILPQTHIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAI 68

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123
           ++E ++LR +     I +L        + + +  +   + +  Q  + S+     G    
Sbjct: 69  IDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSQAAQKVGKKAK 128

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLER 181
             ++VDTG  R+G     E++    N       +L  I SH + ADDP S      Q  +
Sbjct: 129 IHIKVDTGMGRIGFLCCDESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDNFTHEQFMK 188

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F   +              +A+SS  +  P Y   + R G+ LYG      + +   ++ 
Sbjct: 189 FENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHISIKP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+    S          
Sbjct: 249 VMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------- 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
                  IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A   
Sbjct: 302 ----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQI 357

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++     R  + Y
Sbjct: 358 GTINYEIVCSFSKRIPRVY 376


>gi|59710909|ref|YP_203685.1| alanine racemase [Vibrio fischeri ES114]
 gi|59479010|gb|AAW84797.1| alanine racemase 1, PLP-binding, biosynthetic [Vibrio fischeri
           ES114]
          Length = 360

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 176/377 (46%), Gaps = 24/377 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   +    +ID++AL +N   +   + +++  AVVK N YG G   IA      G   F
Sbjct: 1   MSYMKAATAQIDMSALAHNLQKIKQQAPSSKLLAVVKANGYGHGLLNIAKGAQ--GADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G +  G   I+   N+   I    Q      L S  
Sbjct: 59  GVARIEEALQLRAGGIVKPILLLEGFYSAGDLPILVTNNIQTAIHCKEQ---LEALESTD 115

Query: 120 VSHPY--ALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNS 176
           +  P    L+VD+G +RLG+  +E  ++       K + +    +SH  CAD+  S   +
Sbjct: 116 LEFPVVAWLKVDSGMHRLGIRPEEFQEYVDRLHACKNVAKPLRYMSHFGCADELDSSTTT 175

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQ 233
            Q++ F +L    +G E SLA+S+G+L  P+      RPGI +YG +    +S       
Sbjct: 176 EQIDTFMSLTKGCQG-ERSLAASAGLLAWPDSRLDWVRPGIIMYGVSPFAEQSAQELGYL 234

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  + +I +R   AGE V YG      RD+ I V AIGY DGYP T           
Sbjct: 235 PTMTLTSHLIAVRDVKAGESVGYGAIWTSERDTKIGVIAIGYGDGYPRTAPN-------- 286

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G  VPI G+++MDM   D+      +VGD   ++G D+  ++VA   GT 
Sbjct: 287 ---GTPVLVNGRKVPIAGRVSMDMLTVDLGPDAQDKVGDEAILWGRDLPSEEVAEHIGTI 343

Query: 354 NYDLLVRIGTRYAKFYT 370
            Y+L+ ++ +R    YT
Sbjct: 344 AYELVTKLTSRVQMQYT 360


>gi|332982730|ref|YP_004464171.1| alanine racemase [Mahella australiensis 50-1 BON]
 gi|332700408|gb|AEE97349.1| alanine racemase [Mahella australiensis 50-1 BON]
          Length = 376

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 101/379 (26%), Positives = 164/379 (43%), Gaps = 27/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +I LT +  N   +    G+     AVVK + YG G  ++A    +AG +   V   E
Sbjct: 9   WAEIRLTDIAYNIAQLRRCIGDDTLFMAVVKADGYGHGAYRVAQTAIDAGARWLGVAIAE 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           EG +LR     A I VL GI P + + +  + L   + S+      S   +  G S    
Sbjct: 69  EGAELRDKGIDAPILVLGGIMPYEAEEVVASGLCQTVFSLDVAKALSDASVKQGKSADVH 128

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           ++VDTG  R+G+    E               ++ + +H A +D         Q+  F  
Sbjct: 129 IKVDTGMGRVGVRPGLELEQLIEGLVGLPGINITGMFTHFAESDACDKSFTKYQMSLFVQ 188

Query: 185 LISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTV 235
            I+  K +         A+S+ ++   + HF + R GIS+YG       ++P     +  
Sbjct: 189 AINQAKAMNVGPLILHAANSAAVIDYTDAHFNMVRGGISIYGYYPSNEINNPQKIDLKPA 248

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ +AR++ ++   AG  +SYG      R S IA  + GYADGY   LS           
Sbjct: 249 LSWKARVVYVKDVPAGTPISYGRTFTTQRSSKIATISAGYADGYRRQLSN---------- 298

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
             G   I+G   P++G++ MD  M D+TD   +  GD + + G      I  D++A    
Sbjct: 299 -KGCVLIRGNRAPVIGRVCMDQFMVDVTDIPGVVTGDEVVLIGRQGNETITADELAELCD 357

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T +Y++L  IG R  + Y 
Sbjct: 358 TISYEILTSIGPRVPRIYV 376


>gi|95930765|ref|ZP_01313498.1| alanine racemase [Desulfuromonas acetoxidans DSM 684]
 gi|95133245|gb|EAT14911.1| alanine racemase [Desulfuromonas acetoxidans DSM 684]
          Length = 371

 Score =  409 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 178/380 (46%), Gaps = 22/380 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M +     + IDL AL++N+H +   +  + R  AVVK +AYG G   +A  L  AG   
Sbjct: 1   MKAYRPTHVAIDLDALRHNYHVLRETMRPDWRMLAVVKADAYGHGAVPVARTLEEAGADL 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
           F V  VEEG++LR       I +L G  PGQE ++ + +L   +  + QL          
Sbjct: 61  FGVAIVEEGLELRAAGITRPILMLGGPWPGQEPVVIEHDLHVAVFEIEQLQRLEHAARQA 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G S    L++D+G  RLG+  ++  +        +  QL  I++H A AD P   + + Q
Sbjct: 121 GKSCFCHLKIDSGMGRLGVRDEQLDEVLRFFLASEALQLVGIMTHFALADCPDHPLTAQQ 180

Query: 179 LERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
              F+  ++  +           ++S+      N    L RPGI+LYGG    +++ P++
Sbjct: 181 QAHFKRALAKVRDAGLIPEYIHSSNSAATFSDVNGGCNLVRPGIALYGGQPFEDRTLPLE 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+     I  +++   G  VSYG +    R +LIA   +GYADGY   LS         
Sbjct: 241 PVMALRTEIAHLKQLPTGSGVSYGHRFIAQRPTLIAAIPVGYADGYNRLLSNC------- 293

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
               G   ++G  V + G + MD T+ D+TD  +++ GD + + G D    +  +  A  
Sbjct: 294 ----GTALVRGQKVAVAGTVCMDWTLLDVTDVANVQCGDRVTLLGCDGDECVLAEQWAEK 349

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++  +I  R  + Y
Sbjct: 350 VGTISYEVFCQISKRVPRHY 369


>gi|119509533|ref|ZP_01628680.1| alanine racemase [Nodularia spumigena CCY9414]
 gi|119465722|gb|EAW46612.1| alanine racemase [Nodularia spumigena CCY9414]
          Length = 395

 Score =  409 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 179/381 (46%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++   ++IDL AL +N   +   LS N +  AVVK +AYG G   +A     +G     V
Sbjct: 23  SQRAWVEIDLGALSHNVQQLVQFLSPNTQLMAVVKADAYGHGAVTVAQTAVESGAGWLGV 82

Query: 63  TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS---C 118
            +V EG++LR    +A I +L     P Q + I    L P + S  Q   +S ++     
Sbjct: 83  ATVPEGIQLREGGIKAPILILGASYTPEQIQAIAHWKLQPSLCSPKQAFIFSNILETIND 142

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G   P  +++DTG +RLG + +EA++F     N    +++ I SHLA ADD  +     Q
Sbjct: 143 GSPLPVHIKLDTGMSRLGTNWKEAVEFVQLVQNLPHLEIASIYSHLATADDLDTTFMQEQ 202

Query: 179 LERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231
             RF   I+  K  GI      LA+S+  L     H+ + R G+++YG      +  +  
Sbjct: 203 HRRFEQAIAQIKSTGINPPCLHLANSAASLTNRALHYDIVRAGLAIYGLYPATHLQHTIH 262

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  + R+  ++   AG  VSYG Q    ++  +AV  IGYADG P  LS       
Sbjct: 263 LKPVLQLKTRVTQVKTIAAGTGVSYGQQFIAPQEMRLAVVGIGYADGVPRNLS------- 315

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
                  +  I+G  VP +G ITMD  M D++    ++ G+ + + G      I  +D A
Sbjct: 316 ----QKMQVLIRGQRVPQVGTITMDQLMLDVSAIPDLQEGEIVTLLGEQGREQISANDWA 371

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
               T ++++L     R  + 
Sbjct: 372 EKLNTISWEILCGFKHRLPRV 392


>gi|145298771|ref|YP_001141612.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851543|gb|ABO89864.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 367

 Score =  409 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 178/370 (48%), Gaps = 23/370 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M++   +   ID+ AL +N+  +   + +++  AV+K NAYG G  ++A  L       +
Sbjct: 1   MNT---VTASIDVDALHHNFAVVRRHAPHSKIIAVLKANAYGHGLLQVANTLSQ--ADAY 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE + LR       I VL G    +   ++   +L   I +  QL    +     
Sbjct: 56  GVARIEEALVLRANAITKPILVLGGFFSAEALPLLAAHDLQTTIHTWDQLALLEQA-DLP 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++DTG NRLGL  Q+   F     N K + Q   +++H + +D+  S     Q
Sbjct: 115 TPITVWLKLDTGMNRLGLRAQDIPAFVERLANCKNVVQPFHLMTHFSQSDEQDSQATPQQ 174

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
           +E F  L +  +G E ++A+S+GIL  P+      RPGI LYG +    ++   H ++ V
Sbjct: 175 IEEFNALTARMQG-ERAMANSAGILAWPDSRSDWIRPGIMLYGASPFGGQLASDHDLRPV 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++++I IR    GE V YGG      D+ + V A+GY DGYP               
Sbjct: 234 MTLKSQLIAIRPCEQGESVGYGGHWVAHHDTTLGVVAVGYGDGYPRMA-----------P 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    I G  VPI+G+++MDM   D+      + GD + ++G  + ++ VA   GT  Y
Sbjct: 283 QGTPVLINGRRVPIVGRVSMDMITVDLGPGAGDKTGDEVILWGDGLPVEQVAEKIGTIPY 342

Query: 356 DLLVRIGTRY 365
           +LL R+ +R 
Sbjct: 343 ELLTRLTSRV 352


>gi|300869471|ref|ZP_07114054.1| Alanine racemase [Oscillatoria sp. PCC 6506]
 gi|300332528|emb|CBN59252.1| Alanine racemase [Oscillatoria sp. PCC 6506]
          Length = 408

 Score =  409 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 176/385 (45%), Gaps = 32/385 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   ++IDL AL +N   +  +LS       VVK +AYG G   +A     AG     V 
Sbjct: 30  QRAWVEIDLAALAHNVRQLKLSLSPKTALMTVVKADAYGHGAVTVAQTALEAGASWLGVA 89

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121
           ++ EG++LR     A I +L   H P Q + I    L P I +  Q   +S+++ +   S
Sbjct: 90  TIPEGIELRDRGINAPILILGATHTPEQVEAIAHWQLQPTICTPKQALVFSEVLGTLNKS 149

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               +++DTG +RLG   Q+A +F          +L+ I SHLA AD P   V   Q +R
Sbjct: 150 LSVHVKLDTGMSRLGSPWQQAAEFVQLVARSPNLELASIYSHLATADSPDFTVMKQQQQR 209

Query: 182 FRTLISHYK------------GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           F   I++ +                 LA+S+  L   + H+ + R G++ YG     +  
Sbjct: 210 FEGAIANCEIQNSELFLNPKSSPRLHLANSAAALADKSLHYDMVRVGLATYGLYPAPHLQ 269

Query: 230 --HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+  +A++  ++   AG  VSYG +    R+  +AV  IGYADG P  LS   
Sbjct: 270 SVIDLKPVMQVKAKVTQVKTIAAGTGVSYGYKFIADREMRLAVIGIGYADGIPRNLSNKM 329

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      K  ++G  V  +G ITMD  M D+T    +EVG+ + + G D    I  
Sbjct: 330 -----------KVLVRGQWVSQVGAITMDQIMLDVTSIPDLEVGEVVTLLGKDGENKISA 378

Query: 344 DDVALASGTTNYDLLVRIGTRYAKF 368
           DD A   GT ++++L     R  + 
Sbjct: 379 DDWAAELGTISWEILCSFKHRLPRI 403


>gi|218708338|ref|YP_002415959.1| alanine racemase [Vibrio splendidus LGP32]
 gi|254802395|sp|B7VI70|ALR_VIBSL RecName: Full=Alanine racemase
 gi|218321357|emb|CAV17307.1| Alanine racemase 1 [Vibrio splendidus LGP32]
          Length = 358

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 174/367 (47%), Gaps = 20/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL AL++N + + + + + +  +VVK N YG G   IA    ++    F V  +EE 
Sbjct: 6   ASIDLNALEHNLNQIKSKAPHCKVMSVVKANGYGHGLLHIAKHSKSS--DAFGVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G +  G   I+   N+  V+    QL+               L+
Sbjct: 64  LQLRAGGIVKPILLLEGFYSSGDLPILVTNNIQTVVHCEEQLSALENA-ELETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VD+G +RLG   ++  +F         + +    +SH  CAD+        Q E F +L 
Sbjct: 123 VDSGMHRLGARPEQYQNFVERLHQCANVAKPLRYMSHFGCADELDRATTVEQTELFLSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARII 243
              +G E SLA+S+G+L  P+ H    RPGI  YG +   +KS        V+T  + +I
Sbjct: 183 DGCEG-ERSLAASAGLLAWPDSHLDWVRPGIISYGVSPFADKSAQDLGFYPVMTLTSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YGG     RD+ + V AIGY DGYP T              G   F+ 
Sbjct: 242 AVRDVKAGESVGYGGNWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVFVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +VGD   ++G D+  ++VA   GT  Y+L+ ++ +
Sbjct: 291 GRKVPIAGRVSMDMLTVDLGPDAADKVGDEATLWGKDLPSEEVAEHIGTIAYELVTKLTS 350

Query: 364 RYAKFYT 370
           R A  Y 
Sbjct: 351 RVAMEYV 357


>gi|77919828|ref|YP_357643.1| alanine racemase [Pelobacter carbinolicus DSM 2380]
 gi|77545911|gb|ABA89473.1| alanine racemase [Pelobacter carbinolicus DSM 2380]
          Length = 378

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 184/379 (48%), Gaps = 24/379 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            ++   R++IDL ALK+N++    L+       AVVK +AYG G   +A AL   GV+ F
Sbjct: 5   RAHRPTRVEIDLEALKHNFYQAQRLAGPGQGVLAVVKADAYGHGAAHVAMALQGVGVEMF 64

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCG 119
            V  VEEGV LR       I VL G++PGQE+ +    L+P +  +       S   + G
Sbjct: 65  GVAIVEEGVALREAGVVCPILVLGGLYPGQEENLLRYGLVPTLFDMDVARRLDSCARAAG 124

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           V  PY ++VDTG +R+G    +              ++  + SHLA AD+P + VN  QL
Sbjct: 125 VVLPYHMKVDTGMSRVGFRPDDLPRVLEELGALSGLRMDGLFSHLAMADEPENTVNQKQL 184

Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
           E FR  +     + +      L++S+ +L        L+RPGI LYG   +        +
Sbjct: 185 EIFRGCLDRVRQAGFAPRYVHLSNSAALLTREVPECNLSRPGILLYGALPSPAFAGRFDL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++   RI  IRK   G  VSYG +    R +++AV  +GYADGY   LS +      
Sbjct: 245 KPVMSFRTRIAQIRKVPEGTGVSYGHRFVAERPTVLAVIPVGYADGYSRQLSNV------ 298

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G+  ++G    + G + MD TM D+TD   + VGD + + G D    I  D+ A 
Sbjct: 299 -----GEMLVRGQRARVAGTVCMDWTMIDVTDIPDVAVGDEVTLLGCDNGQCITADEWAE 353

Query: 349 ASGTTNYDLLVRIGTRYAK 367
             GT +Y++  +   R  +
Sbjct: 354 RIGTISYEVFCQFSKRVPR 372


>gi|308271849|emb|CBX28457.1| Alanine racemase [uncultured Desulfobacterium sp.]
          Length = 386

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 102/394 (25%), Positives = 164/394 (41%), Gaps = 38/394 (9%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++  +  +IDL A+ +N   +  +   ++R  AVVK NAYG G  ++A    + G +   
Sbjct: 2   ADNIIWAEIDLKAIAHNLSELRRIINPDSRLMAVVKANAYGHGSVEVARCALDNGAEYLG 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120
           V  +EE + LR     A I +     P   + I   NL+  + S       S    S   
Sbjct: 62  VARIEEAMLLRKNNIDAPILIFGFTQPDSYENILKYNLVQTVCSYAFAESLSSFAISKNQ 121

Query: 121 SHPYALQVDTGFNRLGLSLQ-------------EALDFTHNSFNKKLGQLSLIISHLACA 167
                +++DTG  R+G+                 AL    +  +    +   I +H + A
Sbjct: 122 KIKVHIKIDTGMGRIGVLPDCFRNYNKNGIKPVSALAEVESIASLSGIEAEGIYTHFSMA 181

Query: 168 DDPSSHVNSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGG 222
           D       + Q E F   IS    KGIE      A+S+ I+  P  H  + R GIS+YG 
Sbjct: 182 DSYDKSFTTKQFEIFMEFISNLKLKGIEFKLKHAANSAAIIDIPKTHLDMVRAGISMYGL 241

Query: 223 TDKINKSHPM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
                 +         ++ +A +  ++    G  VSYG   K T  + IA   +GYADGY
Sbjct: 242 YPSEEVNKDRVSLLPAMSLKAIVTQVKNVSCGFNVSYGATYKTTAPTTIATVPVGYADGY 301

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339
              LS             G   + G   PI G++ MD+TM D+     ++ GD + +FG 
Sbjct: 302 SRLLSSR-----------GHMLVHGQKAPIAGRVCMDLTMLDVGSITEVKQGDEVVVFGK 350

Query: 340 D----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
                + +D++A    T NY+++  I  R  + Y
Sbjct: 351 QNGSCVTVDEIATLINTINYEIVTLISERVKRVY 384


>gi|254415385|ref|ZP_05029146.1| alanine racemase [Microcoleus chthonoplastes PCC 7420]
 gi|196177860|gb|EDX72863.1| alanine racemase [Microcoleus chthonoplastes PCC 7420]
          Length = 391

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 175/378 (46%), Gaps = 25/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E   ++ID  AL +N + +  L S   +  AVVK +AYG G   +A      G     V 
Sbjct: 23  ERAWVEIDRAALAHNLNQLKQLLSAKTQLMAVVKADAYGHGATMVAQTALATGAYGLCVA 82

Query: 64  SVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
           +VEEG++LR     A I +L     P Q + I    L P I +  Q   +S  L  C   
Sbjct: 83  TVEEGIQLREAGIDAPIVILGATNTPEQVRAIAHWYLQPTICTPQQALVFSDTLSRCQTP 142

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L +DTG +RLG+S Q+A +F          +L+ + SHLA AD P   V  +Q +R
Sbjct: 143 LSVHLNIDTGMSRLGMSWQQATEFVQLVQRLPHLKLASVYSHLATADSPDPTVMRLQHQR 202

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQT 234
           F   I+             LA+S+  L  P  H+   R G++LYG      ++    ++ 
Sbjct: 203 FEAAIAQLHAANIVPPCLHLANSAATLTDPALHYDWVRVGLALYGLYPAPHLHPKVNLKP 262

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  + R+  ++   AG  VSYG   +  +   +AV  IGYADG P  LS   +      
Sbjct: 263 VMQVKTRVTQVKTIPAGTGVSYGYTFRTQKQLRLAVVGIGYADGVPRNLSNKMT------ 316

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                G I+G  V  +G ITMD  M D+++   ++VG+ + + G D    I  DD A++ 
Sbjct: 317 -----GLIRGQRVSQIGAITMDQLMLDVSNIPDLQVGEIVTLIGRDGDRQISADDWAISL 371

Query: 351 GTTNYDLLVRIGTRYAKF 368
            T ++++L     R  + 
Sbjct: 372 NTISWEILCGFKHRLPRV 389


>gi|197334235|ref|YP_002155060.1| alanine racemase [Vibrio fischeri MJ11]
 gi|197315725|gb|ACH65172.1| alanine racemase [Vibrio fischeri MJ11]
          Length = 357

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/369 (30%), Positives = 174/369 (47%), Gaps = 24/369 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +ID++AL +N   +   + +++  AVVK N YG G   IA      G   F V  +EE 
Sbjct: 6   AQIDMSALAHNLQKIKQQAPSSKLLAVVKANGYGHGLLNIAKGAQ--GADAFGVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--A 125
           ++LR       I +L G +  G   I+   N+   I    Q      L S  +  P    
Sbjct: 64  LQLRAGGIVKPILLLEGFYSAGDLPILVTNNIQTAIHCKEQ---LEALESTDLEFPVVAW 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VD+G +RLG+  +E  ++       K + +    +SH  CAD+  S   + Q++ F +
Sbjct: 121 LKVDSGMHRLGIRPEEFQEYVDRLHACKNVAKPLRYMSHFGCADELDSSTTTEQIDTFMS 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEAR 241
           L    +G E SLA+S+G+L  P+      RPGI +YG +    +S         +T  + 
Sbjct: 181 LTKGCQG-ERSLAASAGLLAWPDSRLDWVRPGIIMYGVSPFSEQSAQELGYLPTMTLTSH 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R   AGE V YG      RD+ I V AIGY DGYP T              G    
Sbjct: 240 LIAVRDVKAGESVGYGAMWTSERDTKIGVIAIGYGDGYPRTAPN-----------GTPVL 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI G+++MDM   D+      +VGD   ++G D+  ++VA   GT  Y+L+ ++
Sbjct: 289 VNGRKVPIAGRVSMDMLTVDLGPEAQDKVGDEAILWGRDLPSEEVAEHIGTIAYELVTKL 348

Query: 362 GTRYAKFYT 370
            +R    YT
Sbjct: 349 TSRVQMQYT 357


>gi|86148219|ref|ZP_01066516.1| alanine racemase [Vibrio sp. MED222]
 gi|85833989|gb|EAQ52150.1| alanine racemase [Vibrio sp. MED222]
          Length = 358

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 175/367 (47%), Gaps = 20/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL AL++N + + + + + +  +VVK N YG G + IA    ++    F V  +EE 
Sbjct: 6   ASIDLNALEHNLNQIKSKAPHCKVMSVVKANGYGHGLQHIAKHSKSS--DAFGVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G +  G   I+   N+  V+    QL+               L+
Sbjct: 64  LQLRAGGIVKPILLLEGFYSSGDLPILVTNNIQTVVHCEEQLSALENA-ELETPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VD+G +RLG   ++  +F         + +    +SH  CAD+        Q E F +L 
Sbjct: 123 VDSGMHRLGARPEQYQNFVERLHQCANVAKPLRYMSHFGCADELDRATTVEQTELFLSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARII 243
              +G E SLA+S+G+L  P+ H    RPGI  YG +   +KS        V+T  + +I
Sbjct: 183 DGCEG-ERSLAASAGLLAWPDSHLDWVRPGIISYGVSPFADKSAQDLGFYPVMTLTSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YGG     RD+ + V AIGY DGYP T              G   F+ 
Sbjct: 242 AVRDVKAGESVGYGGNWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVFVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +VGD   ++G D+  ++VA   GT  Y+L+ ++ +
Sbjct: 291 GRKVPIAGRVSMDMLTVDLGPDAADKVGDEATLWGKDLPSEEVAEHIGTIAYELVTKLTS 350

Query: 364 RYAKFYT 370
           R A  Y 
Sbjct: 351 RVAMEYV 357


>gi|17229950|ref|NP_486498.1| alanine racemase [Nostoc sp. PCC 7120]
 gi|17131550|dbj|BAB74157.1| alanine racemase [Nostoc sp. PCC 7120]
          Length = 401

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 173/381 (45%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++   ++IDL AL +N   +   LS   +  AVVK +AYG G   +A     AG     V
Sbjct: 29  SQRAWVEIDLEALSHNVQQLKQFLSPRTQLMAVVKADAYGHGAVTVAQTALQAGASCLGV 88

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118
            +V EG++LR    QA I +L   H P Q + I    L   I S  Q   +S  +     
Sbjct: 89  ATVPEGIQLREAGIQAPILILGATHTPEQIQAIAQWQLQATIGSPKQALIFSNTLETIQH 148

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               P  +++DTG +RLG + Q+A +F           ++ + SHLA AD P   +   Q
Sbjct: 149 DSPIPVHIKLDTGMSRLGTNWQQAGEFVQLVERLPHLDIASVYSHLATADSPDPGIMEEQ 208

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
             RF   I+  K +        LA+S+  L  P  H+ + R G+++YG      +     
Sbjct: 209 HRRFEEAIAQIKTLGIKIPSLHLANSAATLADPRLHYDMVRVGLAVYGLYPAPHLQNKIS 268

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  +ARI  ++   AG  VSYG Q     +  +AV +IGYADG P  LS       
Sbjct: 269 LKPVIQVQARITHVKTIAAGTGVSYGHQFIAPHEMRLAVVSIGYADGVPRNLSNKM---- 324

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                  +  I+G  VP +G ITMD  M D +    ++ G+ + + G      I  DD A
Sbjct: 325 -------QVLIRGQRVPQIGAITMDQLMIDASALPDLQEGEIVTLLGKQGKEKITADDWA 377

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
            A  T ++++L     R  + 
Sbjct: 378 EALNTISWEVLCGFKHRLPRV 398


>gi|260893600|ref|YP_003239697.1| alanine racemase [Ammonifex degensii KC4]
 gi|260865741|gb|ACX52847.1| alanine racemase [Ammonifex degensii KC4]
          Length = 369

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 169/376 (44%), Gaps = 23/376 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            +  ++   AL++N   +  + G + R   +VK NAYG G   +A  L  AGV    V  
Sbjct: 4   PVWAEVSREALRHNLRVVKEIVGPSVRVMGIVKANAYGHGLVPVAKILEEAGVDWLGVAR 63

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123
            +E ++LR       I VL  +HP +   +    +     S   L  ++ +    G    
Sbjct: 64  GQEALELRREGVDHPILVLGYVHPAECPALLAQEVTLTAYSEDILREWAGIAQREGKRLK 123

Query: 124 YALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +VDTG  RLG   + A  +           ++  I +H ACAD P       QLE+F
Sbjct: 124 VHFKVDTGMGRLGFKAEPAGKEAILRLAALPRVEVEGIYTHFACADLPDEKPTRDQLEKF 183

Query: 183 RTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
             L+   +           A+S+ ++     H  + RPGI LYG     +    +   +T
Sbjct: 184 IMLLEELERAGLSIPLRHAANSAALIRFRESHLDMVRPGIMLYGLLPFPSARVNLSPAMT 243

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +AR++ +++  AG  VSYG   + +R SL+A  A GY DGY   LS             
Sbjct: 244 LKARVVQVKRVGAGFPVSYGWTYRTSRPSLLATVAAGYGDGYSRLLSN-----------K 292

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G+  ++G  VP++G++ MD  + D T+   +E G+ + +FG      + ++++A   GT 
Sbjct: 293 GEVLLRGRRVPVVGRVCMDQLIVDATELGEVEPGEEVVLFGRQGEVSLPVEELAEKIGTI 352

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 353 NYEVVCAVSARVPRVY 368


>gi|312876893|ref|ZP_07736869.1| alanine racemase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796304|gb|EFR12657.1| alanine racemase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 390

 Score =  407 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 161/379 (42%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            +   IDL  L  N  ++   +    R  AVVK +AYG G  +I+  L   GV    V  
Sbjct: 9   RVWADIDLDNLVYNLENIKKKILPQTRIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAI 68

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           ++E ++LR +     I +L        + + +  +   + +  Q  + S+     G    
Sbjct: 69  IDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSQAAQKIGKKAK 128

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
             ++VDTG  R+G     E++    N       +L  I SH + ADDP   H    Q  +
Sbjct: 129 IHIKVDTGMGRIGFLCCNESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDHFTHEQFMK 188

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F   +              +A+SS  +  P Y   + R G+ LYG      + +   ++ 
Sbjct: 189 FENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPSSSLKEHLSIKP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+    S          
Sbjct: 249 VMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------- 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
                  IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A   
Sbjct: 302 ----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGRQGKNEILADHLAEQI 357

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++     R  + Y
Sbjct: 358 GTINYEVVCSFSKRIPRVY 376


>gi|261346560|ref|ZP_05974204.1| alanine racemase [Providencia rustigianii DSM 4541]
 gi|282565263|gb|EFB70798.1| alanine racemase [Providencia rustigianii DSM 4541]
          Length = 360

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 186/365 (50%), Gaps = 19/365 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+ N+R  AVVK NAYG G   +   +    V  F V  + E + 
Sbjct: 8   INRRALRHNLQRVRELAPNSRLIAVVKANAYGHGLVGVGTEVQEL-VDGFGVARLNEALL 66

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G       +++ + N+  VI  V QL                +++D
Sbjct: 67  LRHQGINKPIVLLEGFFEQSDLQLMVEYNIDTVIHCVEQLEMLESAQ-LAKQIKVWMKLD 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  Q A  F     + +   L + I+SH   AD P     + Q+E F+  +S 
Sbjct: 126 TGMHRLGVLPQHAESFYQRLQSCQNVDLPINIVSHFCQADAPELPTTAKQIECFQQFVSD 185

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILI 245
             G E S+A+S+GILL P  H+   RPGI +YG + +  KS     +  V+T ++ +I +
Sbjct: 186 KPG-EKSIAASAGILLWPEAHYDWVRPGIMMYGASPQEGKSAASFGLLPVMTLKSSLIAV 244

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AG+ V YG   +  R++L+ V AIGY DGYP            +V  G    + G 
Sbjct: 245 REHSAGQCVGYGETWRSERNTLLGVVAIGYGDGYPR-----------NVPSGTPVLVNGR 293

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI+G+I+MDMT+ D+    + +VGD + ++G  + ++++A  +G  NY+LL ++ +R 
Sbjct: 294 KVPIIGRISMDMTVVDLGPDSTDKVGDDVILWGNALPVEEIAAQTGIINYELLTKLTSRV 353

Query: 366 AKFYT 370
           A  Y 
Sbjct: 354 AMEYV 358


>gi|116251316|ref|YP_767154.1| alanine racemase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255964|emb|CAK07045.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 389

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 183/366 (50%), Positives = 246/366 (67%), Gaps = 2/366 (0%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +DLTAL  NW  M   SG AR +AVVK +AYG+G E    ALY AG +DFFV +V+
Sbjct: 21  LRLTVDLTALTENWRDMARRSGAARASAVVKADAYGMGIEDAGEALYMAGARDFFVATVD 80

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV LRLY P+AR+FVL GI PG E+  F+ +L+PVISS  QL F+  +++    +P AL
Sbjct: 81  EGVTLRLYAPEARVFVLSGIWPGTERRFFENDLVPVISSDEQLAFWMAVLADYGDYPCAL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTGFNRLGL + +A+    +          L++SHLACADDP+  +N  QLE F  + 
Sbjct: 141 HVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACADDPTHAMNRQQLESFHRVS 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG      ++PM+ V TAEARII +R
Sbjct: 201 AAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGMANPMRPVATAEARIIQVR 260

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE VSYG   +L R+S +A+A+ GYADGY  + S         V  GG+GFI G+ 
Sbjct: 261 SVEAGETVSYGRALQLRRESRLAIASAGYADGYMRSQSSGGVPLRQVVPQGGQGFIAGHK 320

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VP+ G+ITMD+T+FDITD     +  GDY+++FG ++ +DDVA ASGT  Y++L  +G R
Sbjct: 321 VPVAGRITMDLTIFDITDLPDNAVRAGDYVELFGKNMPVDDVARASGTIGYEILTSMGLR 380

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 381 HERRYV 386


>gi|158321297|ref|YP_001513804.1| alanine racemase [Alkaliphilus oremlandii OhILAs]
 gi|158141496|gb|ABW19808.1| alanine racemase [Alkaliphilus oremlandii OhILAs]
          Length = 390

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 101/380 (26%), Positives = 166/380 (43%), Gaps = 27/380 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             +  +I+L  LK+N H++  +   +    AV+K + YG G  +IA  L   G     V 
Sbjct: 8   RPVWAEINLDHLKHNIHAIKNIVKKDTIVCAVIKADGYGHGAAEIAKTLLENGADRIAVA 67

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSH 122
           ++ E V LR    +  I VL      Q ++I D N+   + S  Q   +S          
Sbjct: 68  TLSEAVALRKSGYEVPIMVLGYTPEHQGELILDNNITQTVYSYDQALEFSNAAKQKNQKM 127

Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L++DTG +RLG    +EA+      FN     +  I +H A ADD        Q   
Sbjct: 128 TLHLKIDTGMSRLGFQPNEEAIHDIKKIFNLPNLTIEGIFTHFAAADDRDKAYTYQQFHT 187

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---Q 233
           F   +   +          +++S+ I+  P  +  + RPGI LYG     +        +
Sbjct: 188 FMDFVKKLEQEGCPIPIKHVSNSAAIMDLPEMNLDMVRPGIILYGLYPSDDVDKSRIELK 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +A+I  ++       +SYG +   + D  I    IGYADGY   +SG        
Sbjct: 248 QVMELKAKISHVKTLTKDRGISYGLKYTTSGDEKIITMPIGYADGYTRMMSG-------- 299

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  +KG  +P++G+I MD  M + T  L +E GD + ++  D    + +DD+A  
Sbjct: 300 ---KAEAIVKGNKIPLVGRICMDQCMANATG-LDVEPGDEVTLYSNDRESGLSIDDIANK 355

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  +G R  + Y
Sbjct: 356 LGTINYEIVCMLGKRVPRVY 375


>gi|254481208|ref|ZP_05094453.1| alanine racemase [marine gamma proteobacterium HTCC2148]
 gi|214038371|gb|EEB79033.1| alanine racemase [marine gamma proteobacterium HTCC2148]
          Length = 360

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/365 (28%), Positives = 168/365 (46%), Gaps = 17/365 (4%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + ++DL AL++N      L+   +   VVK N YG G   +A            V  +EE
Sbjct: 6   QARLDLAALRHNLAHARQLAPECKVMCVVKANGYGHGALNVARVFAPM-ADALAVACIEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            ++LR    +  I +L G+   QE II       V+    Q  ++ +           L+
Sbjct: 65  AIELRDGGIETPILLLQGVFEAQELIIASQQNFWVMVDNRQHLYWLEQARLPAPVTCWLK 124

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-ISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA +F     + +     L+  +H A AD+      + QL  F ++ 
Sbjct: 125 IDTGMHRLGVQPEEAAEFHQRLSSCENRTGELVTCTHFASADELDKPQTTEQLALFESIT 184

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
           +   G   S A+SSG+L  PN H+   RPG  LYG +        +  +  V+T  + +I
Sbjct: 185 ADLPG-PRSAANSSGLLGWPNSHYDWIRPGYMLYGNSPFTATHPNTDTLHPVMTLCSAVI 243

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            IR   +GE V Y       R S IA  +IGY DGYP   +            G    I 
Sbjct: 244 SIRNVASGESVGYAANWTAQRPSRIATVSIGYGDGYPRLAAN-----------GTPVLIN 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G   P+ G+++MDM   DITD   +++GD + ++G ++ + +VA  +GT  Y+L  R+  
Sbjct: 293 GQRAPLAGRVSMDMITVDITDLDDVKLGDQVILWGEELPVSEVAAHAGTIGYELTTRMPA 352

Query: 364 RYAKF 368
           R  + 
Sbjct: 353 RTPRV 357


>gi|20137211|sp|Q8YU96|ALR_ANASP RecName: Full=Alanine racemase
          Length = 386

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 173/381 (45%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++   ++IDL AL +N   +   LS   +  AVVK +AYG G   +A     AG     V
Sbjct: 14  SQRAWVEIDLEALSHNVQQLKQFLSPRTQLMAVVKADAYGHGAVTVAQTALQAGASCLGV 73

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118
            +V EG++LR    QA I +L   H P Q + I    L   I S  Q   +S  +     
Sbjct: 74  ATVPEGIQLREAGIQAPILILGATHTPEQIQAIAQWQLQATIGSPKQALIFSNTLETIQH 133

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               P  +++DTG +RLG + Q+A +F           ++ + SHLA AD P   +   Q
Sbjct: 134 DSPIPVHIKLDTGMSRLGTNWQQAGEFVQLVERLPHLDIASVYSHLATADSPDPGIMEEQ 193

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
             RF   I+  K +        LA+S+  L  P  H+ + R G+++YG      +     
Sbjct: 194 HRRFEEAIAQIKTLGIKIPSLHLANSAATLADPRLHYDMVRVGLAVYGLYPAPHLQNKIS 253

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  +ARI  ++   AG  VSYG Q     +  +AV +IGYADG P  LS       
Sbjct: 254 LKPVIQVQARITHVKTIAAGTGVSYGHQFIAPHEMRLAVVSIGYADGVPRNLSNKM---- 309

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                  +  I+G  VP +G ITMD  M D +    ++ G+ + + G      I  DD A
Sbjct: 310 -------QVLIRGQRVPQIGAITMDQLMIDASALPDLQEGEIVTLLGKQGKEKITADDWA 362

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
            A  T ++++L     R  + 
Sbjct: 363 EALNTISWEVLCGFKHRLPRV 383


>gi|295402565|ref|ZP_06812514.1| alanine racemase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975413|gb|EFG51042.1| alanine racemase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 381

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 150/374 (40%), Gaps = 26/374 (6%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +IDL A+  N   +   L  + R  AVVK NAYG G  ++A     AG     V  ++
Sbjct: 7   WAEIDLDAIYYNVSQLKNFLPNDVRIMAVVKANAYGHGDVQVAKTALEAGASYLAVAFLD 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E + LR     A I VL    P    I     +   +     +   +   S      + L
Sbjct: 67  EALALRKGGIDAPILVLGASRPSDINIAAKHRITLTVFQAEWIEQAADFYSETAPVLFHL 126

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG  RLG+  + E               L  + +H A AD+ ++   S Q + F  +
Sbjct: 127 KMDTGMGRLGVKEETETKRLIEQIDRHPYFSLEGVYTHFATADEINTGYFSFQYDNFLRM 186

Query: 186 ISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
           +    YK       +S+  L  P+  F + R GIS+YG +          + ++   +  
Sbjct: 187 LEWLPYKPPLIHCGNSATTLRFPDKVFNMVRFGISMYGLSPSPEIKQYLPYTLKEAFSLH 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R++ ++K   GE VSYG       +  +    IGYADG+   L                
Sbjct: 247 SRLVHVKKLKPGEKVSYGATYTAETEQWVGTVPIGYADGWLRKLQNF------------H 294

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G   PI+G+I MD  M  +   L +  G  + + G      I +DDVA    T NY
Sbjct: 295 VLVNGEKAPIIGRICMDQLMVRLPKQLPV--GTKVTLIGRQGDKYISVDDVAQYLDTINY 352

Query: 356 DLLVRIGTRYAKFY 369
           ++   I  R  + +
Sbjct: 353 EIPCTISYRVPRIF 366


>gi|315634389|ref|ZP_07889676.1| alanine racemase [Aggregatibacter segnis ATCC 33393]
 gi|315476979|gb|EFU67724.1| alanine racemase [Aggregatibacter segnis ATCC 33393]
          Length = 360

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 110/369 (29%), Positives = 177/369 (47%), Gaps = 19/369 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH  +    KI   ALK+N  ++   + N++  AVVK NAYG G   ++ A+ +  V  F
Sbjct: 1   MH-MKPATAKISSVALKHNIQTIKQKAPNSKIIAVVKANAYGHGVVFVSSAVESL-VDCF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE +KLR       I +L G    ++  I+   N+  V+ S  QL    +  +  
Sbjct: 59  GVARLEEALKLRSNGITKPILLLEGFFSSKDLPILAVNNIQTVVHSQEQLEALEEAQTPN 118

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQ 178
                 L++DTG +RLG+ L E   F     +      +   +SH + AD+        Q
Sbjct: 119 -PVKVWLKIDTGMHRLGVHLDEVDSFYQKLKSLPCVDPNIGFVSHFSRADELECGYTEKQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVV 236
           L RF        G E S+++S GIL   + H    RPGI +YG +      K + +  V+
Sbjct: 178 LSRFLQATEGKSG-ERSISASGGILFWQDAHLDWIRPGIIMYGISPNNTAGKEYGLTPVM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              + +I +R+   GE V YGG     +D+ I V AIGY DGYP             V  
Sbjct: 237 NLTSSLIAVREHKKGEPVGYGGVWTSEKDTKIGVVAIGYGDGYPR-----------DVPQ 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G   ++ G  VPI+GK++MDM   D+      +VGD + ++G ++ ++++A  +G  +Y+
Sbjct: 286 GTPVYLNGRRVPIVGKVSMDMLTVDLGADSQDKVGDEVILWGKELPIEEIAEITGVISYE 345

Query: 357 LLVRIGTRY 365
           L+ ++  R 
Sbjct: 346 LITKLTPRV 354


>gi|119776189|ref|YP_928929.1| alanine racemase [Shewanella amazonensis SB2B]
 gi|254802373|sp|A1SA53|ALR_SHEAM RecName: Full=Alanine racemase
 gi|119768689|gb|ABM01260.1| alanine racemase [Shewanella amazonensis SB2B]
          Length = 364

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 22/371 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA----GVQDF 60
            F R +I   ALK N   +  ++  ++  AVVK N YG G   +A  L +A        F
Sbjct: 3   PFPRAEISSRALKANLKRLRQIAPGSKVMAVVKANGYGHGLLNVAEVLTDAHSNADADGF 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            +  +EE +++R     AR+ +L G    ++  ++ + ++  V+  V QL     + S  
Sbjct: 63  GLARLEEALEVRAGGVSARLLLLEGFFRSEDLPLLVEHDIDTVVHHVSQLDMLESV-SLS 121

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++D+G +RLG    E  D       N  + +   +++H +CAD+P     + Q
Sbjct: 122 KPVTVWLKIDSGMHRLGFHASEFKDVYQRLQQNPNVAKPVHLMTHFSCADEPQKDFTATQ 181

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
           +  F  L     G + +LA+S+G+L  P       RPGI+LYG +     +  +H ++  
Sbjct: 182 MAHFNALTQGLPG-DRTLANSAGVLYWPQSQADWIRPGIALYGVSPVAGDLGSNHGLEPA 240

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   +++I +R+  AGE V YG     +RD+ + V AIGY DGYP            +  
Sbjct: 241 MELVSQLIAVREHSAGESVGYGAYWTASRDTRLGVVAIGYGDGYPR-----------NAP 289

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI+G+++MDM   D+    + +VGD   ++G ++ +++VA   GT  Y
Sbjct: 290 EGTPVLVNGRRVPIVGRVSMDMLTVDLGPDAADKVGDRALLWGKELPVEEVAERIGTIAY 349

Query: 356 DLLVRIGTRYA 366
           +L+ ++  R A
Sbjct: 350 ELVTKLTPRVA 360


>gi|332711200|ref|ZP_08431133.1| alanine racemase [Lyngbya majuscula 3L]
 gi|332350014|gb|EGJ29621.1| alanine racemase [Lyngbya majuscula 3L]
          Length = 408

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 118/379 (31%), Positives = 180/379 (47%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +    +ID  AL +N   +  L     +  AVVK +AYG G   +A     AG     V
Sbjct: 38  RQRAWAEIDQVALHHNLRQIQQLWRHPTQLMAVVKADAYGHGALTVARTAIEAGAGGLCV 97

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
            +V EG++LR    +A I +L     P Q K I    L P + +  Q   +S+ L     
Sbjct: 98  ATVSEGIQLRQGGIKATILLLGATNTPEQVKAIAHWQLEPTLCNPQQALVFSETLSGLNQ 157

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           S P  L++DTG +RLG+  Q+A++F          +++ + SHLA AD P   V   Q +
Sbjct: 158 SLPVHLKLDTGMSRLGMPWQDAIEFVRLVQQLPNLEIASVYSHLATADSPDPTVMRQQHQ 217

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233
           RF+  I+  +  GI      LA+S+  L     H+   R G+++YG      + K   ++
Sbjct: 218 RFKNAIAQLQAGGITPPRLHLANSAATLTDSALHYDWVRVGLAVYGLYPAEHLQKVIHLK 277

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +ARI  I+    G  +SYG Q    R   +AV  IGYADG P  LS   +     
Sbjct: 278 PVMQVKARITQIKTIPPGTGISYGHQFISNRQMRLAVVGIGYADGVPRNLSNRIN----- 332

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I+G  VP +G ITMD  M D++D  +I+VG+ + + G D    I  DD A+A
Sbjct: 333 ------VIIRGQQVPQIGAITMDQLMLDVSDIPNIQVGEIVTLIGQDGEEQISADDWAMA 386

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT +++++     R  + 
Sbjct: 387 LGTISWEIICGFKHRLPRV 405


>gi|188590505|ref|YP_001920878.1| alanine racemase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500786|gb|ACD53922.1| alanine racemase [Clostridium botulinum E3 str. Alaska E43]
          Length = 386

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 161/379 (42%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL A+  N  ++  L+ N    AVVK + YG G   + P L   G     V  
Sbjct: 6   RPVWAEIDLDAIAYNMKNIKKLAQNKDVIAVVKADCYGHGALDVVPTLLENGASRLAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           + E ++LR     A I +L        + + + ++   +  +      S L         
Sbjct: 66  LTEAIELRNNNVNAPIMILGYTPEYLFEEVVNYDIEQTVYDLEYAKKLSHLAIKFNKKAK 125

Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    E A+      ++ K   +  I +H + +D+      + Q  +F
Sbjct: 126 IHIAIDTGMGRIGFIPNEKAIKDIKEIYDLKGIDVIGIFTHFSTSDETDKEYTNEQFNKF 185

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
            + I     +        +++S  I+  P  +    R GI LYG          +  ++ 
Sbjct: 186 TSFIDMLSKVGVKIPIKHISNSGAIIDLPKTYLDSVRAGIILYGYYPSDEINKDNIKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +A +  +++      +SYG   K  R S+IA   IGYADGY   L+          
Sbjct: 246 ALTLKASLTRVQELDINSYISYGKTFKTERKSIIATLPIGYADGYSRLLA---------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
             G K  I G   PI+G+I MD  M D+TD  ++ VGD + I G D    +  +D+A + 
Sbjct: 296 -PGAKVIINGQFAPIVGRICMDQCMIDVTDIDNVNVGDEVIILGEDDNLKLTANDLANSM 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  +  R  + Y
Sbjct: 355 GTINYEILCMLKYRIPRVY 373


>gi|251780841|ref|ZP_04823761.1| alanine racemase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085156|gb|EES51046.1| alanine racemase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 386

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 160/379 (42%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL A+  N  ++  L+ N    AVVK + YG G   + P L   G     V  
Sbjct: 6   RPVWAEIDLDAIAYNMKNIKKLAQNKDVIAVVKADCYGHGALDVVPTLLENGASRLAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           + E ++LR     A I +L        + + + ++   +  +      S L         
Sbjct: 66  LTEAIELRNNNVTAPIMILGYTPEYLFEEVVNYDIEQTVYDLEYAKKLSHLAIKFNKKAK 125

Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    E A+      +N K   +  I +H + +D+      + Q  +F
Sbjct: 126 IHIAIDTGMGRIGFIPNEKAIKDIKKIYNLKGLDVIGIFTHFSTSDETDKEYTNEQFNKF 185

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
            + I     +         ++S  I+  P  +    R GI LYG          +  ++ 
Sbjct: 186 TSFIDMLSKVGVKIPIKHTSNSGAIIDLPKTYLDSVRAGIILYGYYPSDEINKDNIKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +A +  +++      +SYG   K  R S+IA   IGYADGY   L+          
Sbjct: 246 ALTLKASLTRVQELDINSYISYGKTFKTERKSIIATLPIGYADGYSRLLA---------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
             G K  I G   PI+G+I MD  M D+TD  ++ VGD + I G D    +  +D+A + 
Sbjct: 296 -PGAKVIINGQFAPIVGRICMDQCMIDVTDIDNVNVGDEVIILGEDGNLKLTANDLANSM 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  +  R  + Y
Sbjct: 355 GTINYEILCMLKYRIPRVY 373


>gi|67922161|ref|ZP_00515676.1| Alanine racemase [Crocosphaera watsonii WH 8501]
 gi|67856061|gb|EAM51305.1| Alanine racemase [Crocosphaera watsonii WH 8501]
          Length = 405

 Score =  405 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 174/379 (45%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++IDL+AL +N   +  L S      AVVK +AYG G   +A  +  AG     V
Sbjct: 25  RQRAWVEIDLSALSHNVVQIKQLLSPKTALMAVVKADAYGHGAIAVAQTVLEAGANALAV 84

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
            ++ EG++LR     A I +L  I  P +   I   N+ P +    Q   +S+ L     
Sbjct: 85  ATLGEGIELREAGITAPILILGAINTPEEIAAIAHWNIEPTLCDPQQAIIFSQTLSQWEK 144

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L++DTG +RLG+   +  +F          +L+ + SHLA ADDP      +Q +
Sbjct: 145 PLSVHLKLDTGMSRLGMPWHQGTEFASLVKKLPYLKLNSVYSHLATADDPDRTNMYLQHK 204

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--Q 233
           RF+T IS  K  G++      A+S+  L+ P  H+ L R G+ LYG     +    +  +
Sbjct: 205 RFKTAISQLKAQGVKPPRLHFANSAATLIAPQLHYDLVRVGLGLYGLYPAPHLRSIVSLK 264

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +A+I  I+   A   VSYG Q    R   IAV  IGYADG P  LS         
Sbjct: 265 PVLQVKAKITQIKTIPANTGVSYGYQFVSDRPMKIAVVGIGYADGVPRQLSNRL------ 318

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  IKG     +G ITMD  M D++    ++VGD + + G D    I  +  A  
Sbjct: 319 -----QVLIKGQRACQIGAITMDQLMLDVSHLRHLKVGDTVTLIGQDGNQEITANHWATM 373

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT ++++L     R  + 
Sbjct: 374 LGTISWEILCGFKHRLPRI 392


>gi|150395954|ref|YP_001326421.1| alanine racemase [Sinorhizobium medicae WSM419]
 gi|150027469|gb|ABR59586.1| alanine racemase [Sinorhizobium medicae WSM419]
          Length = 408

 Score =  405 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/376 (47%), Positives = 243/376 (64%), Gaps = 6/376 (1%)

Query: 1   MHSNEFL----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +++F     RL +DL AL +NW  MN  SG AR AAV+K NAYGLG  + APALY AG
Sbjct: 30  MQNSDFSSASSRLTVDLAALADNWRMMNERSGRARAAAVLKGNAYGLGVMQAAPALYAAG 89

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            +DFFV SVEEG +LR   P+ R++VL G+ PG E + F+ +L+P+I+S  QL ++   +
Sbjct: 90  ARDFFVASVEEGAELRPLVPEGRVYVLAGMWPGNEALFFENDLVPIINSQEQLAYFMAAL 149

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           S    HP  L VDTG NRLGLS +EAL   H+          L++SHLACADDP   +N 
Sbjct: 150 SERGDHPCVLHVDTGMNRLGLSPEEALRLVHDPVRPASFSPVLVMSHLACADDPGHPMNR 209

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
            QL+RFR + + ++G+ ASLA+S G+ LG +YHF LTRPGI++YGG       +PM+ VV
Sbjct: 210 HQLQRFREVTAFFEGVPASLANSGGVFLGEDYHFDLTRPGIAVYGGEAVDGDVNPMKPVV 269

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
            AEARI+ IR   +GE  SYG   +  RDS IA  AIGYADGY  ++SG       ++  
Sbjct: 270 IAEARIVQIRTVPSGESASYGASVRFGRDSRIATVAIGYADGYHRSVSGGGVTLRQAMPS 329

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN 354
           G  GF+ G  VP +G++TMD+++FD+TD     +  GDYI++FG +I +DDVA A GT  
Sbjct: 330 GAFGFLHGRKVPHVGRVTMDLSLFDVTDLPESTVRAGDYIELFGRNIPIDDVARAGGTIG 389

Query: 355 YDLLVRIGTRYAKFYT 370
           Y+LL  +G RY + Y 
Sbjct: 390 YELLTSLGRRYHRTYV 405


>gi|300854387|ref|YP_003779371.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
 gi|300434502|gb|ADK14269.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
          Length = 386

 Score =  405 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 96/384 (25%), Positives = 167/384 (43%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N   +  +++L  L  N  ++ A +       VVK +AYG G  +++  L   G   
Sbjct: 1   MFRNYRPVWAEVNLDNLAYNMRNIKAQTMTKEIFGVVKADAYGHGALEVSKVLLENGATR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118
             V  + EG++LR       I +L          +   +L PV+ S       S+  +  
Sbjct: 61  LSVAVLSEGIELRKGGITCPINILGVTPSTLFPDLIGYSLEPVVFSYEYAKSLSEYANSK 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  L VD+G  R+G    E  ++           ++  + SH + AD+     +  
Sbjct: 121 NKKVKVHLAVDSGMGRIGFLPTEHNVEEAVKISKISNIEIESVFSHFSTADEKDKKYSKF 180

Query: 178 QLERFRTLISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-- 230
           Q +++R  ++    KG+      +++S+ I+  P  +    RPGI LYG           
Sbjct: 181 QFDKYRWFVNELKEKGLNIKIRDISNSAAIVDLPETYCDGVRPGIILYGYYPSDEVDKSR 240

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T +A ++ ++    G+ V YG + K  R ++IA   +GYADGY   LSG    
Sbjct: 241 LDIKPVMTLKASVVYLKTLNEGQYVGYGRRFKTERRTVIATLPVGYADGYTRILSGKL-- 298

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                    K  I G + P++G I MD  M D+TD   +++GD + + G D       +D
Sbjct: 299 ---------KVIINGKLAPVIGNICMDQCMIDVTDIEDVKIGDEVILMGSDGKVKFDAED 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y++L  +  R  + Y
Sbjct: 350 IAKLLGTISYEVLCMVNKRVPRVY 373


>gi|312881940|ref|ZP_07741697.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370376|gb|EFP97871.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 360

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/367 (29%), Positives = 174/367 (47%), Gaps = 20/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL ALK+N   +   + N++  AVVK N+YG G   +A          F V  +EE 
Sbjct: 6   AHIDLEALKHNLGRVKQQAPNSKVMAVVKANSYGHGLHYVAQHASA--ADAFGVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G +  ++  ++   ++  V+    QL    K  S        L+
Sbjct: 64  LQLRASGVVKPILLLEGFYSSRDLPVLVTNSIHTVVHCEEQLYDLEKA-SLENPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  +    F       K + +    +SH  CAD+    +   Q+E F +L 
Sbjct: 123 IDSGMHRLGVRPEHFEHFVERLEACKNVAKPLRYMSHFGCADELDKPITQKQIELFLSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
               G E SLA+S+G+L  P+   +  RPGI LYG +   NK       + V+T ++ +I
Sbjct: 183 KGCLG-ERSLANSAGVLAWPDSQLEWVRPGIILYGVSPLPNKTATDLGFKPVMTLKSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   +GE V YGG     RD+ + V AIGY DGYP                G    + 
Sbjct: 242 AVRTVKSGESVGYGGNWTSDRDTKVGVIAIGYGDGYPRMAPN-----------GTPVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP+ G+++MDM   D+      +VGD   ++G  + +++VA   GT  Y+L+ ++ +
Sbjct: 291 GRKVPMAGRVSMDMLTVDLGPDAKDKVGDEAILWGNGLDVEEVAHHIGTIAYELVTKLTS 350

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 351 RVDMEYS 357


>gi|312112523|ref|YP_003990839.1| alanine racemase [Geobacillus sp. Y4.1MC1]
 gi|311217624|gb|ADP76228.1| alanine racemase [Geobacillus sp. Y4.1MC1]
          Length = 381

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 150/374 (40%), Gaps = 26/374 (6%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +IDL A+  N   +   L  + R  AVVK NAYG G  ++A     AG     V  ++
Sbjct: 7   WAEIDLDAIYYNVSQLKNFLPNDVRIMAVVKANAYGHGDVQVAKTALEAGASYLAVAFLD 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E + LR     A I VL    P    I     +   +     +   +   S      + L
Sbjct: 67  EALALRKGGIDAPILVLGASRPSDINIAAKHRITLTVFQAEWIEQAADFYSETAPVLFHL 126

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG  RLG+  + E               L  + +H A AD+ ++   S Q + F  +
Sbjct: 127 KMDTGMGRLGVKEETETKRLIEQIDRHPYFSLEGVYTHFATADEINTGYFSFQYDNFLRM 186

Query: 186 ISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
           +    YK       +S+  L  P+  F + R GIS+YG +          + ++   +  
Sbjct: 187 LEWLPYKPPLIHCGNSATTLRFPDKVFNMARFGISMYGLSPSPEIKQYLPYTLKEAFSLH 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R++ ++K   GE VSYG       +  +    IGYADG+   L                
Sbjct: 247 SRLVHVKKLKPGEKVSYGATYTAETEQWVGTVPIGYADGWLRKLQNF------------H 294

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G   PI+G+I MD  M  +   L +  G  + + G      I +DDVA    T NY
Sbjct: 295 VLVNGEKAPIIGRICMDQLMVRLPKQLPV--GTKVTLIGRQGDKYISVDDVAQYLDTINY 352

Query: 356 DLLVRIGTRYAKFY 369
           ++   I  R  + +
Sbjct: 353 EIPCTISYRVPRIF 366


>gi|258592918|emb|CBE69227.1| Alanine racemase [NC10 bacterium 'Dutch sediment']
          Length = 392

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 104/377 (27%), Positives = 170/377 (45%), Gaps = 26/377 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               +++DL A+++N  ++  L   + +  +VVK + YG G   +A    +AG     V 
Sbjct: 18  HRAWVEVDLEAIRHNIAAIRRLLKPSTQLMSVVKADGYGHGAVAVARTALSAGASWLAVA 77

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           +V+EG+ LR+    A I +   +    + + + +  L P + S+ Q   +S+        
Sbjct: 78  TVDEGISLRMAGIDAPILLFGPVICTEEIEAVAEHRLQPTVCSLDQARRFSEA--GLGPV 135

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P  L+VDTG +RLG+S QEA D            +  + SHLA AD         Q ERF
Sbjct: 136 PIHLKVDTGMSRLGISWQEAQDLLSAIRVLPDVSVVSLYSHLATADAVDPTTTREQFERF 195

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTV 235
             L+   +  GI      LA+S+  L  P+ HF L R G++ YG      +     ++  
Sbjct: 196 SQLVETLEQQGIRPPLVHLANSAATLTFPDTHFDLVRIGLAQYGLYPSSHLQAVVALRPA 255

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +A+II ++    G  VSYG   +  R + +A  +IGY DG    LS           
Sbjct: 256 LALKAKIIFVKTVPPGTGVSYGHTFRTARRTRLATVSIGYGDGISRALSNRIDF------ 309

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 ++G  V  +G ITMD  + D+TD+  +  GD   + G D    I + + A   G
Sbjct: 310 -----LVRGRRVRQVGTITMDQCLIDVTDAPEVSDGDIATLLGHDGEEGISIAEWAERLG 364

Query: 352 TTNYDLLVRIGTRYAKF 368
           T  Y++L  +  R  + 
Sbjct: 365 TIPYEILTALSPRLPRI 381


>gi|172038632|ref|YP_001805133.1| alanine racemase [Cyanothece sp. ATCC 51142]
 gi|171700086|gb|ACB53067.1| alanine racemase [Cyanothece sp. ATCC 51142]
          Length = 404

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 169/379 (44%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++IDL+AL +N   +  L S      AVVK +AYG G   +A  +  AG +   V
Sbjct: 25  RQRAWVEIDLSALSHNVVQIKQLLSPKTTLMAVVKADAYGHGAIAVAQTVLQAGAKALAV 84

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
            ++ EG++LR     A I +L  I  P +   I   NL P +    Q    S  L     
Sbjct: 85  ATLGEGIELREAGITAPILILGAINTPEEITAIAHWNLEPTLCYPEQALMVSDTLSQYEK 144

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L++DTG +RLG    +  +F           LS + SHLA ADDP      +Q +
Sbjct: 145 PLSVHLKLDTGMSRLGTPWHQGTEFASLVQQLPYLNLSSVYSHLATADDPDPSHMYLQHK 204

Query: 181 RFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233
           RF+T I + K           A+S+  L+ P  H+ L R G++LYG      +    P++
Sbjct: 205 RFKTAIDNLKAQGIVPPRLHFANSAATLIAPQLHYDLVRVGLALYGLYPADHLRSIVPLK 264

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +A+I  I+   A   VSYG Q    R   IAV  IGYADG P  LS         
Sbjct: 265 PVLQVKAKITQIKSIPANTGVSYGYQFVSDRPMKIAVVGIGYADGVPRNLSNRL------ 318

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G     +G ITMD  M D++    ++VGD + + G D    I  D  A  
Sbjct: 319 -----QVLIHGQRACQIGAITMDQLMLDVSHLRHVKVGDVVTLIGKDEDQEISADHWAKM 373

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT ++++L     R  + 
Sbjct: 374 LGTISWEILCGFKHRLPRI 392


>gi|330957316|gb|EGH57576.1| alanine racemase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 357

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 169/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AV+K +AYG G  ++A  L  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLARESSGG-KALAVIKADAYGHGAVRVAQTL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E  +I + +L  V+ S  QL    +    G    
Sbjct: 60  IEEALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHSTWQLEAIERA-HPGKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E         +       ++++H ACAD+ +S  ++ Q   F 
Sbjct: 119 VWLKLDTGMHRVGLHPSEYRAAYQRLLSTGNVAKIVLMTHFACADELNSPSSAEQCAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    E SL +S  ++  P      +R GI LYG T        +  +Q V+T E+
Sbjct: 179 ATCQGLAA-ETSLKNSPAVMGWPKIPGDWSRAGIMLYGATPFDQAQPLAERLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R   AGE V YG      + S I V A+GYADGYP                G   
Sbjct: 238 KIISVRDLPAGEAVGYGATFVTDKPSRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    ++G+++MDM   D+T+     +G  ++++G  +   DVA  +GT  Y +   
Sbjct: 287 QIDGQRSRLVGRVSMDMLCVDLTELPQAGIGSRVELWGKAVLASDVAAQAGTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRVYS 355


>gi|189425818|ref|YP_001952995.1| alanine racemase [Geobacter lovleyi SZ]
 gi|189422077|gb|ACD96475.1| alanine racemase [Geobacter lovleyi SZ]
          Length = 380

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 170/386 (44%), Gaps = 28/386 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  +     +IDL AL+ N+  + + +   +   AVVK +AYG G  +++  L   GV  
Sbjct: 1   MFDSRPTFAEIDLGALRENYSVVRSSVPSRSAVLAVVKADAYGHGFLEVSKELERQGVDA 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
           F V  + E ++LR       + +L GI+PGQE+      +   + S+ QL          
Sbjct: 61  FGVAFLAEAIQLRKAGIDKPVLLLGGIYPGQERKCVGYGISSAVFSLEQLKALDLAAGKL 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VN 175
                  L+VDTG  RLG+   +     +         L  +ISH A AD+         
Sbjct: 121 YRKALVHLKVDTGMGRLGIPYDQVPALLNALKLLPNIYLEGVISHFASADELDESGQYFT 180

Query: 176 SVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINK 228
            +Q ERF   +   +          +A+S+G LL       L RPGI+LYG   +     
Sbjct: 181 RLQGERFGWAVEQIRKAGFSPRYIHIANSAGALLNDYPFCNLVRPGIALYGALPSPDFQG 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V+  +++I +++       +SYG +    + +LIA   +GYADGYP  L+    
Sbjct: 241 RLSLRPVMRLKSKIAMLKWVEPATTISYGRRFTAEQRTLIASVPVGYADGYPRALTN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK-----L 343
                    G+  ++G    + G + MD  M D+T    + VGD + + G D K      
Sbjct: 298 --------KGQVLVRGERAQVSGTVCMDWLMLDVTHIPGVAVGDDVTLIGEDRKGNTVFA 349

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           ++VA  +GT  Y+LL  I  R  + Y
Sbjct: 350 EEVAHWAGTIPYELLCGISKRVPRVY 375


>gi|238754673|ref|ZP_04616026.1| Alanine racemase 1 [Yersinia ruckeri ATCC 29473]
 gi|238707132|gb|EEP99496.1| Alanine racemase 1 [Yersinia ruckeri ATCC 29473]
          Length = 359

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 181/366 (49%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  L+  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRLAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++   ++   + S+ QL    +           ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFSAEDLPVLVVNHIETAVHSIEQLEALEQA-DLPYPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+   EA  F         + Q   I+SH + AD+P       Q+E F T +
Sbjct: 123 LDTGMHRLGVRPDEAEAFYQRLSACHNVVQPINIMSHFSQADEPEVSATRQQIECFDTFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
           +   G + S+A+S GILL P+ H    RPGI LYG +    K      +Q  +T ++ +I
Sbjct: 183 ADKPGKQ-SIAASGGILLWPDSHRDWVRPGIVLYGVSPIEQKNGADFGLQPGMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK  AGE V YGG     RD+ + V A+GY DGYP +              G   ++ 
Sbjct: 242 AVRKHKAGEPVGYGGTWVSQRDTRLGVVAMGYGDGYPRSA-----------PSGTPVWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G+++MDM   D+    S  VGD ++++G D+ ++ VA+A+G + Y+L+ ++  
Sbjct: 291 GREVPIVGRVSMDMISVDLGPDSSDRVGDEVELWGADLPVEKVAIATGISAYELITKLTP 350

Query: 364 RYAKFY 369
           R +  Y
Sbjct: 351 RVSMEY 356


>gi|150018925|ref|YP_001311179.1| alanine racemase [Clostridium beijerinckii NCIMB 8052]
 gi|149905390|gb|ABR36223.1| alanine racemase [Clostridium beijerinckii NCIMB 8052]
          Length = 387

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 101/381 (26%), Positives = 163/381 (42%), Gaps = 26/381 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL A+  N  ++  L  +    AVVK + YG G   + P L   G     V  
Sbjct: 6   RPVYAEIDLDAIAYNIKNIKKLVKDKEIIAVVKADCYGHGALDVVPTLLENGASRLAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           + EG++LR    +A I +L        + +   +L   +  +      SK  +S      
Sbjct: 66  LTEGIELRNDNIKAPIMILGYTPSYLNEELIKYDLEQTVYDLDYAKELSKTALSLNKKAK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    ++A+D      + +  ++  I +H + +D+      + Q E+F
Sbjct: 126 IHIAIDTGMGRIGFLPTEKAIDAICKICSLEGLEVIGIFTHFSTSDEKDKEYTNEQFEKF 185

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
             L+     +        +++S  I+  P  +    R GI LYG         ++  ++ 
Sbjct: 186 TDLLKKLSNLNIEIPIKHVSNSGAIMDMPETYLDAVRAGIILYGYYPSPEVKKENLSLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +A I  +++  AG  +SYG      R SLIA   IGYADGY   L+          
Sbjct: 246 ALTLKATITRVQEMDAGMSISYGRTFNTERKSLIATIPIGYADGYSRLLA---------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD----IKLDDVALA 349
               K  I G   PI+G+I MD  M DITD    I+VGD + I G         D+ A  
Sbjct: 296 -KNAKVIINGQFAPIVGRICMDQCMIDITDINGDIKVGDEVIILGEQNGLRFNADNFAEI 354

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
            GT NY++L  +  R  + Y 
Sbjct: 355 MGTINYEILCMLKYRIPRVYV 375


>gi|268591426|ref|ZP_06125647.1| alanine racemase [Providencia rettgeri DSM 1131]
 gi|291313080|gb|EFE53533.1| alanine racemase [Providencia rettgeri DSM 1131]
          Length = 360

 Score =  404 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 184/365 (50%), Gaps = 19/365 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  ++ N++  AVVK NAYG G   +  A+    V  F V  + E + 
Sbjct: 8   INRRALRHNLQRVKEIAPNSQMIAVVKANAYGHGLVGVGQAVEEL-VDGFGVARLNEALL 66

Query: 71  LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR +     I +L G     + ++  +  +  VI  + QL                +++D
Sbjct: 67  LRQHGVIKPIVLLEGFFEQSDLLLMAEHQIDTVIHCIEQLEMLEA-TKLPYPLKVWMKLD 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++A  F       +  QL + I+SH   AD P       Q+  F+  I  
Sbjct: 126 TGMHRLGILPKDAEGFYQRLQRCQQVQLPINIVSHFCQADAPHLPTTEKQIACFKQFIDG 185

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILI 245
            +G E S+A+S+GILL P  H+   RPGI +YG + +     +   +  V+T ++ +I +
Sbjct: 186 KEG-EKSIAASAGILLWPEAHYDWVRPGIMMYGASPQEGKSAEDFGLLPVMTLKSTLIAV 244

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AG+ V YG      +D+L+ V AIGY DGYP            +V  G    I G 
Sbjct: 245 REHAAGQCVGYGETWCSDKDTLLGVVAIGYGDGYPR-----------NVPSGTPVLINGR 293

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI+G+I+MDMT+ D+  +   +VGD + ++G  + ++++A  +G  NY+LL ++ +R 
Sbjct: 294 KVPIVGRISMDMTVVDLGLNADDKVGDDVILWGNQLPVEEIATQTGIINYELLTKLTSRV 353

Query: 366 AKFYT 370
           A  Y 
Sbjct: 354 AMEYV 358


>gi|118581006|ref|YP_902256.1| alanine racemase [Pelobacter propionicus DSM 2379]
 gi|118503716|gb|ABL00199.1| alanine racemase [Pelobacter propionicus DSM 2379]
          Length = 433

 Score =  404 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/383 (27%), Positives = 176/383 (45%), Gaps = 28/383 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +IDL+AL++N+  + + +S  A   AVVK +AYG G   I+  L   GV  F V
Sbjct: 60  SRPTFAEIDLSALRHNFQLIRSSVSPQAELLAVVKADAYGHGFMDISRELERLGVNAFGV 119

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VS 121
             + E ++LR       I +L G++PGQE+     N+  ++ ++ Q     +  +     
Sbjct: 120 AFLAEAIQLRKAGIDRPILLLGGVYPGQERKCIGYNISTIVFNLEQARALDRAAAKLFRK 179

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQ 178
               L+VDTG  RLG+   E   F           L  ++SH A AD+ +      + +Q
Sbjct: 180 AQLHLKVDTGMGRLGIPYAEVPSFLRELAALPHISLEGVVSHFASADELNESGRYFSRLQ 239

Query: 179 LERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
            ERF   ++      +      +A+S+  LL       L RPGI+LYG   +        
Sbjct: 240 AERFAWALAETRSAGFAPRYVHIANSAAGLLRDIPGCNLVRPGIALYGALPSPDFQGQLD 299

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  ++RI +++    G  +SYG +      +LIA   +GYADGY   L+       
Sbjct: 300 LRPVMRLKSRIAMLKWVEPGTPISYGRRFTTGGRTLIASVPVGYADGYVRALTNR----- 354

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDV 346
                 G+  ++G    + G + MD  M D+T    + VGD + + GPD     I  +++
Sbjct: 355 ------GEALVRGERARVAGTVCMDWIMLDVTGVKGVSVGDPVVLMGPDDSGNCIHAEEL 408

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A+GT  Y++   I  R  + Y
Sbjct: 409 AEAAGTIPYEIFCGISKRVPRVY 431


>gi|117620242|ref|YP_857049.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561649|gb|ABK38597.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 369

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 181/375 (48%), Gaps = 23/375 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M++   +   ID+ AL++N+  +   + +++  AV+K NAYG G   +A AL  A    +
Sbjct: 1   MNT---VTASIDIDALQHNFAVVRRHAPHSKIIAVLKANAYGHGLLPVAHAL--AQADAY 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  VEE + LR       I VL G    +   ++    L   + +  QL    +  S  
Sbjct: 56  AVARVEEALVLRANAITKPILVLGGFFSAEALPLLAKHELQTTLHTWEQLALLEQA-SLP 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++DTG NRLGL  +E   F       + + Q   +++H + +D+  +    +Q
Sbjct: 115 APIKVWLKLDTGMNRLGLRAEELPAFIERLSHCRNVVQPFHLMTHFSQSDEQDTQATRLQ 174

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
           +E F  L +H  G E ++A+S+GIL  P       RPG+ LYG +    ++   H ++ V
Sbjct: 175 IEEFNRLSAHLPG-ERAMANSAGILAWPASRSDWIRPGLMLYGASPFAGQLAADHDLRPV 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++++I  R    GE V YGG     R++ + V A GY DGYP               
Sbjct: 234 MTLKSQLIATRACAQGEAVGYGGHWVADRNTTLGVVAAGYGDGYPRMA-----------P 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    I G  VPI+G+++MDM   D+  +   +VGD + ++G  + ++ VA   GT  Y
Sbjct: 283 EGTPMLINGRQVPIVGRVSMDMITVDLGPAARDKVGDEVTLWGEGLPVEQVAEKIGTIPY 342

Query: 356 DLLVRIGTRYAKFYT 370
           +LL R+ +R    Y 
Sbjct: 343 ELLTRLTSRVHLTYC 357


>gi|186685683|ref|YP_001868879.1| alanine racemase [Nostoc punctiforme PCC 73102]
 gi|186468135|gb|ACC83936.1| alanine racemase [Nostoc punctiforme PCC 73102]
          Length = 395

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 178/381 (46%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++   ++IDL AL  N   +   LS   +  AVVK +AYG G   +A  +  +G     V
Sbjct: 23  SQRAWVEIDLGALSYNVQQLVQFLSPRTQLMAVVKADAYGHGALTVAQTVIQSGASWLGV 82

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118
            +V E ++LR    +A I +L   H P Q   I   NL P + S  Q   +S ++     
Sbjct: 83  ATVPEAIQLREGGIEAPILILGATHTPEQIHAIAQWNLQPTLCSPKQALVFSNILESMNH 142

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G   P  +++DTG +RLG + Q+A +F           ++ I SHLA ADDP +     Q
Sbjct: 143 GSPVPVHIKLDTGMSRLGTNWQQAGEFVQLVQRLPHLSIASIYSHLATADDPDTTAMEEQ 202

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
             RF   I+  K +E       LA+S+  L  P  H+ + R G+++YG      +  +  
Sbjct: 203 HRRFEEAIAQIKAMEIEAPCLHLANSAAALTDPALHYDIVRVGLAVYGLYPAPHLQNAID 262

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  +AR+  ++   AG  VSYG +    R+  +AV  IGYADG P +LS       
Sbjct: 263 LKPVLQLKARVTQVKTIAAGTAVSYGHKFIAPRELRLAVVGIGYADGVPRSLSNKM---- 318

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
                  +  I G  V  +G ITMD  M D++   +I+ G+ + + G      I  DD A
Sbjct: 319 -------QALIHGQRVSQIGTITMDQLMLDVSAIPNIQEGEVVTLLGKQGKEQISADDWA 371

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
               T ++++L     R  + 
Sbjct: 372 EQLNTISWEILCGFKHRLPRV 392


>gi|311281403|ref|YP_003943634.1| alanine racemase [Enterobacter cloacae SCF1]
 gi|308750598|gb|ADO50350.1| alanine racemase [Enterobacter cloacae SCF1]
          Length = 359

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/368 (30%), Positives = 173/368 (47%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G    G   +I    L   + ++ QL    +  +        ++
Sbjct: 64  LRLREGGITQPILLLEGFFNAGDLPVISAQRLHTAVHNLEQLEALEQA-TLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       + + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCQNVRQPVNIVSHFARADEPECGATERQLDVFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAEARI 242
               G   S+A+S GILL P  HF   RPGI LYG +    K        Q V++  + +
Sbjct: 183 DGKPG-MRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEGKPWGPDFGLQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG  +  RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWESARDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+        GD + ++G  + ++ +A  S  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDRAGDPVVLWGEGLPVERIAELSKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|16331712|ref|NP_442440.1| alanine racemase [Synechocystis sp. PCC 6803]
 gi|1001266|dbj|BAA10510.1| alanine racemase [Synechocystis sp. PCC 6803]
          Length = 400

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 170/379 (44%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++ID  AL +N               AVVK +AYG G  ++A     AG     +
Sbjct: 31  RQRAWVEIDQAALVHNVRQFRQYVGPKTNLMAVVKADAYGHGAVRVAQTALQAGADWLAI 90

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
            ++ EG++LR     A I +L GI+ P + + I    L P + S  Q   ++  L+  G 
Sbjct: 91  ATLGEGIELREAGITAPILLLGGINSPEEIEAIAHWRLQPTLCSPEQAQLFNDILLKLGK 150

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             P  L++DTG  RLG    +A +F     +    +L+ + SHLA ADDP++     Q E
Sbjct: 151 VLPVHLKLDTGMTRLGTPWPQAANFVGLVQSLPQLRLASLYSHLATADDPNTATMLQQQE 210

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233
           RF   I+  +       +  LA+S+  L G  +H+ + R G+ LYG     +      ++
Sbjct: 211 RFAKAIASLRQARLPIPKLHLANSAATLHGQAWHYDMVRVGLGLYGLYPAPHLGDCLDLK 270

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  A+I  IR    G  VSYG Q        +AV  IGYADG P  LS         
Sbjct: 271 PVLTVRAKITQIRTIPPGTGVSYGHQFVSEETMPMAVVGIGYADGVPRNLSNQL------ 324

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  ++G  V  +G ITMD  M D+      +VG+ + + G D    I  D  A  
Sbjct: 325 -----EVLLRGQPVRQIGAITMDQMMVDLRGIDDPQVGEVVTLIGQDGDRQITADHWAST 379

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT ++++L     R  + 
Sbjct: 380 LGTISWEILCGFKHRLPRI 398


>gi|212710295|ref|ZP_03318423.1| hypothetical protein PROVALCAL_01354 [Providencia alcalifaciens DSM
           30120]
 gi|212687102|gb|EEB46630.1| hypothetical protein PROVALCAL_01354 [Providencia alcalifaciens DSM
           30120]
          Length = 360

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 182/365 (49%), Gaps = 19/365 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+ N+R  AVVK NAYG G   +   +    V  F V  + E + 
Sbjct: 8   INRRALRHNLQRVRELAPNSRLIAVVKANAYGHGLIGVGTEIQ-GSVDGFGVARLNEALL 66

Query: 71  LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G       +++ + ++  VI  V QL                +++D
Sbjct: 67  LRHQGVTKPIVLLEGFFEQSDLQLMVEYHIDTVIHCVEQLEMLESAQ-LAKKIKVWMKLD 125

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  Q A  F     +     L + I+SH   AD P       Q+E F+  +S 
Sbjct: 126 TGMHRLGILPQHAESFYQRLQSCSNVDLPINIVSHFCQADAPELPTTQKQIECFQQFVSD 185

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILI 245
             G E S+A+S+GILL P  H+   RPGI +YG + +  KS     +  V+T ++ +I +
Sbjct: 186 KPG-EKSIAASAGILLWPEAHYDWVRPGIMMYGASPQEGKSAASFGLLPVMTLKSTLIAV 244

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AG+ V YG      R++ + V AIGY DGYP            +V  G    + G 
Sbjct: 245 REHSAGQCVGYGETWCSERNTRLGVVAIGYGDGYPR-----------NVPSGTPVLVNGR 293

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI+G+I+MDMT+ D+    + +VGD + ++G  + ++++A  +G  NY+LL ++ +R 
Sbjct: 294 KVPIIGRISMDMTVVDLGPDATDKVGDDVILWGNALPVEEIATQTGIINYELLTKLTSRV 353

Query: 366 AKFYT 370
           A  Y 
Sbjct: 354 AMEYV 358


>gi|22294181|dbj|BAC08012.1| alanine racemase [Thermosynechococcus elongatus BP-1]
          Length = 412

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 171/381 (44%), Gaps = 25/381 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           H  E   ++IDL AL  N  S+   L+      AVVK +AYG G   +A  +   G    
Sbjct: 40  HECERAWIEIDLAALAANTRSLRQWLAPTTELLAVVKADAYGHGALTVAQTVLAHGATWL 99

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
            V ++ EG+ LR     A I VL  ++ P Q +++    L P +S+  Q   +S      
Sbjct: 100 GVATIPEGIALRQAGITAPILVLGSVNLPVQVQMMAQWQLQPTLSTPKQALIFSDYADRL 159

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L +DTG +RLG   Q+A+ F          ++  I SH A ADDP + +   Q
Sbjct: 160 REPLDVHLMIDTGMSRLGCPWQDAVGFVQFVQRLPHLRIQGIYSHFASADDPDASLMRQQ 219

Query: 179 LERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231
              F  +           +   +A+S+  L   + H+ + R G+SLYG      +    P
Sbjct: 220 QAYFEQVWEQISALGLGPVRRHMANSAATLANRSSHYDMVRIGLSLYGVYPASHLRGVVP 279

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+   +RI L+++  AG  +SYG Q    +   IAV  IGYADG P  LS       
Sbjct: 280 LRPVMQVRSRITLLKEIPAGTGISYGHQFIAPQPMKIAVVGIGYADGVPRLLSNKL---- 335

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                  +  ++G  +  +G ITMD  M D++D   ++ GD + + G D    + ++  A
Sbjct: 336 -------EVLVQGKRLRQVGAITMDQLMIDVSDMDGLQEGDVVTLLGEDGGDCLTVETWA 388

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
            A GT  +++L     R  + 
Sbjct: 389 EALGTITWEILCGFKNRLPRI 409


>gi|152975352|ref|YP_001374869.1| alanine racemase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024104|gb|ABS21874.1| alanine racemase [Bacillus cytotoxicus NVH 391-98]
          Length = 392

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 169/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++++L A+K+N         N      A VK NAYG G  ++A A   AGVQ   V  V+
Sbjct: 11  VEVNLDAIKHNVKEFKKRIHNENITMMAAVKANAYGHGAVEVAKAATEAGVQQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           EG++LR       I VL        +   + +++  +  + +L+  +++           
Sbjct: 71  EGIELREAGVTVPILVLGYTPVEAAQDAIEYDIMMTVYRIEELSSINEIAKQLQTKARVH 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F          ++  + +H + AD+      ++Q + F   
Sbjct: 131 VKIDTGMSRIGLQEEEVAPFLKELQKMNHIEVEGMYTHYSTADELDKTYTNMQTKLFEKA 190

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTAKELGMPIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I++A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKRAKKNRGVSYGNTYMTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
           G   I G  VP+LG++ MD  M D+T ++ + VGD +  +G     +I +++VA    T 
Sbjct: 300 GHALINGIRVPVLGRVCMDQLMLDVTKAMPVRVGDEVVFYGKQGDEEISVEEVADLLDTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRAY 375


>gi|256821804|ref|YP_003145767.1| alanine racemase [Kangiella koreensis DSM 16069]
 gi|256795343|gb|ACV25999.1| alanine racemase [Kangiella koreensis DSM 16069]
          Length = 364

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/371 (28%), Positives = 185/371 (49%), Gaps = 22/371 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N +++  ++  +R  AVVK +AYG G  ++A AL + G   F V +
Sbjct: 2   RSTKAIIDLAALRHNLNTIKTIANGSRVMAVVKADAYGHGLVQVAKALTD-GADMFAVAT 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           V+E + LR    +  I +L GI   ++ +++ + +L  V+   PQ+       +      
Sbjct: 61  VQEALSLRKAEIKTPILLLEGIFNAKDLELVVEHDLQVVLHHWPQIEALQNF-NTDKKIQ 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLER 181
             +++D+G NRLG +LQ+ L    ++ +K   L     ++SH A ADDP    +S QLE 
Sbjct: 120 VWVKLDSGMNRLGFALQD-LALIESTLSKIPSLANPIRLMSHFASADDPEDEFSSTQLEA 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
           F     +    E S+A+S+GIL     H+   RPG+ LYG +         + ++ V++ 
Sbjct: 179 FDQATKNITT-EKSMANSAGILTQKGAHYDWVRPGLLLYGCSPLVGSEASDYDLKPVMSL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E++++ I+    GE   YG      RD+ + + AIGY DGYP                  
Sbjct: 238 ESQVLAIKPIKKGESTGYGRHWFADRDTNLGLVAIGYGDGYPRHARNS-----------T 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G +VP++G+++MDM   D+       VGD + ++G ++  + VA  + T  Y L 
Sbjct: 287 PVWLNGRIVPLVGRVSMDMMAVDLGPDCQDAVGDRVVLWGKELPAESVAPFADTIPYTLF 346

Query: 359 VRIGTRYAKFY 369
             +  R  +FY
Sbjct: 347 CGVTRRV-RFY 356


>gi|251792441|ref|YP_003007167.1| alanine racemase [Aggregatibacter aphrophilus NJ8700]
 gi|247533834|gb|ACS97080.1| alanine racemase [Aggregatibacter aphrophilus NJ8700]
          Length = 360

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH  +    KI   ALK+N  ++   + N++  AVVK NAYG G   ++ A+ +  V  F
Sbjct: 1   MH-MKPATAKISSVALKHNIQTIKQKAPNSKIIAVVKANAYGHGVVFLSSAVESL-VDCF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE +KLR       I +L G    ++  I+   N+  V+ S  QL    +  +  
Sbjct: 59  GVARLEEALKLRSNGITKPILLLEGFFSSKDLPILAVNNIQTVVHSKEQLEALERAKTPN 118

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQ 178
                 L++DTG +RLG+ L E   F     +      +   +SH + AD+        Q
Sbjct: 119 -PVKVWLKIDTGMHRLGVHLDEVETFYQKLKSLTCVDPNIGFVSHFSRADELECGYTEKQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVV 236
           L RF        G E S+++S GIL  P  H    RPGI +YG +      K + +  V+
Sbjct: 178 LARFLQATEGKSG-ERSISASGGILFWPEAHLDWIRPGIIMYGISPNNTAGKEYGLTPVM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              + +I +R+   GE V YGG     +D+ I V AIGY DGYP             V  
Sbjct: 237 NLTSSLIAVREHKKGEPVGYGGVWVSDKDTKIGVVAIGYGDGYPR-----------DVPE 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G   ++ G  VPI+GK++MDM   D+      +VGD + ++G ++ ++++A  +G  +Y+
Sbjct: 286 GTPVYLNGRRVPIVGKVSMDMLTVDLGADSQDKVGDEVILWGKELPIEEIASIAGIISYE 345

Query: 357 LLVRIGTRY 365
           L+ ++  R 
Sbjct: 346 LITKLTPRV 354


>gi|24375404|ref|NP_719447.1| alanine racemase [Shewanella oneidensis MR-1]
 gi|81845755|sp|Q8EAI6|ALR_SHEON RecName: Full=Alanine racemase
 gi|24350242|gb|AAN56891.1|AE015824_2 alanine racemase, biosynthetic [Shewanella oneidensis MR-1]
          Length = 358

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 182/367 (49%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I  +AL+NN   +   + +++  AVVK N YG G   +A  L       F +  
Sbjct: 3   PFPRAEISSSALQNNLAVLRQQASSSQVMAVVKANGYGHGLLNVAKCL--NNADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR  + +AR+ +L G     +  ++ + ++  V+    Q+    +  +      
Sbjct: 61  LEEALELRAGSVKARLLLLEGFFRSTDLPLLVEHDIDTVVHHESQIEMLEQA-TLSKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G +RLG++ ++           K + +   +++H ACAD+P +H   VQ++ F
Sbjct: 120 VWLKVDSGMHRLGVTPEQFSAVYARLTACKNVAKPIHLMTHFACADEPDNHYTQVQMQTF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAE 239
             L +   G   +LA+S+G L  P       RPGI++YG +        +H +   +   
Sbjct: 180 NQLTADLPGF-RTLANSAGALYWPKSQGDWIRPGIAMYGVSPVTGDCGANHGLIPAMNLV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+I +R+  A + V YG      +D+ + V AIGY DGYP            +   G  
Sbjct: 239 SRLIAVREHKANQPVGYGCYWTAKQDTRLGVVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            +I G  VPI+G+++MDM   D+    + +VGD + ++G  + +++VA   GT  Y+L+ 
Sbjct: 288 VWINGRRVPIVGRVSMDMLTVDLGHDATDQVGDDVLLWGQALPVEEVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|167036307|ref|YP_001671538.1| alanine racemase [Pseudomonas putida GB-1]
 gi|166862795|gb|ABZ01203.1| alanine racemase [Pseudomonas putida GB-1]
          Length = 357

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/369 (28%), Positives = 173/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ S+ QL    K         
Sbjct: 60  IEEALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEK-TQLHKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++  D              +++SH A AD+  +   + Q+  F 
Sbjct: 119 VWLKLDSGMHRVGLHPKDYHDAYQRLLASGKVSRIVLMSHFARADELDADATAQQIAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
                    E SL +S G+L  P       RPG+ LYG T       ++  +Q V+T ++
Sbjct: 179 AARQGLAA-ECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVPQAEAARLQPVMTLQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+TD     VG  ++++G  +   +VA  +GT  Y +   
Sbjct: 287 LVAGQRTQLIGRVSMDMLNIDLTDVPQATVGSPVELWGKQVLASEVAAQAGTIPYQIFCN 346

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 347 L-KRVPRDY 354


>gi|146296075|ref|YP_001179846.1| alanine racemase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409651|gb|ABP66655.1| alanine racemase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 387

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 166/384 (43%), Gaps = 26/384 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M     +  +I+L  L  N +++   +  N +  AVVK +AYG G  +++  L   G+  
Sbjct: 1   MSLYSRVWAEINLDNLIYNVNNIKEKILPNTQIMAVVKADAYGHGAIEVSRVLVRNGINM 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
             V  ++E ++LR Y     I +L        + + + ++   + +  Q  + ++     
Sbjct: 61  LAVAIIDEALQLRHYNFDIPILILGFTPFELSEQVVENDISQTVYTFEQAYYLNEAAKKI 120

Query: 119 GVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNS 176
           G      ++VDTG  R+G    +E+++      +    +L  I SH + ADDP S +   
Sbjct: 121 GKKAKVHIKVDTGMGRIGFLCTKESIETIIRIASLSHIELEGIFSHFSSADDPQSDNFTY 180

Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKS 229
            Q  RF   +              +A+S+  +  P Y   + R G+ LYG      +   
Sbjct: 181 EQFLRFENFVKELNKNGVYFKYRHIANSAAAIRFPQYQLDIVRLGLVLYGLYPSEAVKTE 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +A++I +++   G  +SY  +      S IA   IGYADG+    S     
Sbjct: 241 ISLKPVMSVKAKVINVKEVPEGYPISYNRKYVTPCKSKIATIPIGYADGFTRVGS----- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                       I G    ++G + MD  M D+T    +++GD + I G     +I  DD
Sbjct: 296 ------EKRYVLINGEYAKVVGNVCMDQCMVDVTHIRDVKIGDEVVIIGKQGKNEITADD 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY+++  +  R  + Y
Sbjct: 350 LASQIGTINYEVICSVSKRIPRVY 373


>gi|270263327|ref|ZP_06191597.1| hypothetical protein SOD_d03440 [Serratia odorifera 4Rx13]
 gi|270043015|gb|EFA16109.1| hypothetical protein SOD_d03440 [Serratia odorifera 4Rx13]
          Length = 359

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 178/366 (48%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +   +  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRQAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++   N+   + S+ QL    +        P  ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFCAEDLPVLVANNIETAVHSIEQLEALEQ-TELARPVPVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       + + Q   I+SH + AD+P S     Q++ F + +
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSACRNVAQPVNIMSHFSRADEPDSDATLKQMQCFESFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
               G + S+A+S G LL P+ H    RPGI LYG +   +       +Q  +T ++ +I
Sbjct: 183 RGKPG-QRSIAASGGTLLWPDAHNDWVRPGIILYGVSPMEDACGSQFDLQPAMTLKSNLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YGG      D+ + V A+GY DGYP +              G   ++ 
Sbjct: 242 AVRDHKAGEAVGYGGTWVSEGDTRLGVVAMGYGDGYPRSA-----------PSGTPVWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP++G+++MDM   D+  + + +VGD + ++G  + ++ +A  +G + Y+L+ ++  
Sbjct: 291 GREVPVVGRVSMDMISVDLGPNATDKVGDEVVLWGKALPVERIAACTGISAYELITKLTQ 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|209693985|ref|YP_002261913.1| alanine racemase [Aliivibrio salmonicida LFI1238]
 gi|259710062|sp|B6ELK6|ALR_ALISL RecName: Full=Alanine racemase
 gi|208007936|emb|CAQ78068.1| alanine racemase [Aliivibrio salmonicida LFI1238]
          Length = 358

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/366 (29%), Positives = 172/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +ID++AL +N   +   + N++  AVVK N YG G   IA      GV  F V  +EE 
Sbjct: 6   AQIDMSALAHNLQKIKQQAPNSKLLAVVKANGYGHGLLNIAKGA--HGVDAFGVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR      ++ +L G +  G   I+   N+   +    QL                L+
Sbjct: 64  LQLRAGGIVKQVLLLEGFYSAGDLPILVANNIQTAVHCKEQLEALENA-DLEGPVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           VD+G +RLG+  +E  ++       K + Q    +SH  CAD+  +   + Q+E F +L 
Sbjct: 123 VDSGMHRLGIRPEEYQEYVDRLHACKNVAQPLRYMSHFGCADELDNPTTNEQIETFMSLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
              +G E SLA+S+G+L  P+      RPGI +YG +    K  +       +T  + +I
Sbjct: 183 DGCQG-ERSLAASAGLLAWPDSQLDWVRPGIIMYGVSPFSEKTAQDLGYLPTMTLTSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG      RD+ I V AIGY DGYP+               G    + 
Sbjct: 242 AVREVKAGESVGYGAMWTSERDTKIGVIAIGYGDGYPIAAPN-----------GTPVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP+ G+++MDM   D+       VGD   ++G D+  ++VA   GT  Y+L+ ++ +
Sbjct: 291 GRKVPVAGRVSMDMLTVDLGPDAEDNVGDEAILWGRDLPAEEVAEHIGTIAYELVTKLTS 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RVQMQY 356


>gi|127514205|ref|YP_001095402.1| alanine racemase [Shewanella loihica PV-4]
 gi|254802378|sp|A3QI45|ALR_SHELP RecName: Full=Alanine racemase
 gi|126639500|gb|ABO25143.1| alanine racemase [Shewanella loihica PV-4]
          Length = 358

 Score =  402 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 99/367 (26%), Positives = 177/367 (48%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I   ALK N   +  L+  ++  AVVK N YG G   +A  L  A    F +  
Sbjct: 3   PFPRAEISGDALKANLKRLRQLAPQSKVMAVVKANGYGHGLLNVAHCL--ASADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A++ +L G   P     + + ++  V+    QL       S      
Sbjct: 61  LEEALELRAGGVSAKLLLLEGFFRPSDVATLVEHDIDTVVHHESQLEMLEAA-SLAKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++DTG +RLG +L +             + +   +++H ACAD+P +   + Q  RF
Sbjct: 120 VWMKIDTGMHRLGFNLDQFEAIYQRLQACANVAKPINLMTHFACADEPDNPATAEQARRF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
             + ++  G + +LA+S+  L          RPGI+LYG +     + ++H ++  +   
Sbjct: 180 EQMTANLPG-DRTLANSAATLYWQATQADWIRPGIALYGVSPVVGDLGRNHGLEPAMELV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R   AG+ V YG   +  +D+ + V AIGY DGYP            +   G  
Sbjct: 239 SQLIAVRDHKAGDPVGYGSYWRAKQDTKLGVVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G +VP++G+++MDM   D+    + +VGD   ++G  + +++VA   GT  Y+L+ 
Sbjct: 288 VWVNGRLVPVVGRVSMDMLTVDLGLDATDKVGDTAVLWGKALPVEEVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|77461745|ref|YP_351252.1| alanine racemase [Pseudomonas fluorescens Pf0-1]
 gi|77385748|gb|ABA77261.1| alanine racemase, catabolic [Pseudomonas fluorescens Pf0-1]
          Length = 365

 Score =  402 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 171/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     ++G A+  AV+K +AYG G  + A AL  A    F V  
Sbjct: 10  RPARALIDLQALRHNYRIAREVTG-AKALAVIKADAYGHGAVRCAQAL-EAEADGFAVAC 67

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +   V+ S+ QL    +  +      
Sbjct: 68  IEEALELRAAGIRAPVLLLEGFFEADELALIVEHDFWCVVHSLWQLEAIEQ-TTLSKPIT 126

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++                 +++SH A AD+     ++ Q+  F 
Sbjct: 127 VWLKLDSGMHRVGLHPKDYPAAYQRLLASGNVAKVVLMSHFARADELHEQSSADQVAVFE 186

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    E SL +S  +L  P  H    RPGI LYG T        +  +Q V+T E+
Sbjct: 187 AARQGLAA-EVSLRNSPAVLGWPQIHSDWVRPGIMLYGATPFEEANAVAERLQPVMTLES 245

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG +    +   I V A+GYADGYP                G   
Sbjct: 246 KVISVRELPAGEPVGYGAKFITDKPMRIGVVAMGYADGYPRQA-----------PTGTPV 294

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ILG+++MDM   D+TD     +G  ++++G +I   DVA  + T  Y +   
Sbjct: 295 LVAGQRSRILGRVSMDMLCIDLTDVPQAGLGSTVELWGKNILASDVAKWADTIPYQIFCN 354

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 355 L-RRVPRLYS 363


>gi|317493449|ref|ZP_07951870.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918392|gb|EFV39730.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 359

 Score =  402 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 177/367 (48%), Gaps = 20/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N+  +   + ++R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNFQQIRQFAPHSRLIAVVKANAYGHGLLETAKTLKD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +KLR       I +L G     +  ++   N+   I S  QL    +           ++
Sbjct: 64  LKLRSGGIVKPILMLEGFFSADDLPVLVANNIETAIHSEEQLQALEEA-ELERPVKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F     N + + Q   I+SH + AD+P + +   QL  F    
Sbjct: 123 LDTGMHRLGVRPEQADAFYTRLSNCRNVEQPVNIMSHFSRADEPETGMTEAQLACFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +   G++ S+A+S GILL    H  + RPGI LYG +         + +Q V+T ++ +I
Sbjct: 183 TGKPGLQ-SIAASGGILLWTQSHRDMVRPGIILYGVSPLAEPYADHYGLQPVMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V Y G     RD+ + V AIGY DGYP +              G    + 
Sbjct: 242 AVREHKAGEPVGYNGTWVSQRDTRLGVVAIGYGDGYPRSA-----------PSGTPVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G+++MDM   D+      +VGD + ++  ++ ++ +A  +G + Y+L+ ++  
Sbjct: 291 GREVPIVGRVSMDMISVDLGPEAKDKVGDEVVLWSAELPVEKIAKYTGISAYELITKLTP 350

Query: 364 RYAKFYT 370
           R    Y 
Sbjct: 351 RVTMEYV 357


>gi|300857181|ref|YP_003782165.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
 gi|300437296|gb|ADK17063.1| alanine racemase [Clostridium ljungdahlii DSM 13528]
          Length = 385

 Score =  402 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/382 (27%), Positives = 179/382 (46%), Gaps = 24/382 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           + ++  + +++DL+ + +N  S+  +  +     VVK +AYG G   +AP L   G    
Sbjct: 2   LTNHRPVWVEVDLSIIASNMRSIRDVCKDKEIFGVVKADAYGHGAIDVAPVLLENGATRL 61

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119
            V  V EG++LR      +I VL    P   + + +  L PV+S        S+   +  
Sbjct: 62  AVALVSEGIELRKAGVTCQINVLGITPPNLFRELLEYELEPVVSDYDYAKALSESAAALN 121

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            +    L+VDTG  R+G  + ++A+D            +  I SH + A + +   +  Q
Sbjct: 122 KTVRIHLKVDTGLGRIGFLTTEKAVDEAVMISKLPNIFIESIFSHFSSAGEANKEYSYKQ 181

Query: 179 LERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP 231
            E+F+  I+    KG+      +A+SS I   P  +    RPG  +YG +  D   +  P
Sbjct: 182 FEKFQWFINKMEEKGLYIKLKHIANSSAIWNLPETYLDGVRPGTIIYGCSSDDVKREVIP 241

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T +A I+ +++  AG+ + YG + +  R S+I    +GYADGY   LSG      
Sbjct: 242 IKPAMTWKANILFLKELEAGQYIGYGRKFRTERKSIIGTLGVGYADGYSRMLSG------ 295

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                  K  I G   P++G I MD  M D+TD   +++GD + + G      I  DD+A
Sbjct: 296 -----KAKVIINGKFAPVVGNICMDQCMVDLTDIGDVKLGDEVILMGSQGELKIDADDIA 350

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT N +++  IG R  + Y
Sbjct: 351 KLIGTNNNEVMCLIGRRVPRVY 372


>gi|161485772|ref|NP_681250.2| alanine racemase [Thermosynechococcus elongatus BP-1]
          Length = 383

 Score =  402 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 171/381 (44%), Gaps = 25/381 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           H  E   ++IDL AL  N  S+   L+      AVVK +AYG G   +A  +   G    
Sbjct: 11  HECERAWIEIDLAALAANTRSLRQWLAPTTELLAVVKADAYGHGALTVAQTVLAHGATWL 70

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
            V ++ EG+ LR     A I VL  ++ P Q +++    L P +S+  Q   +S      
Sbjct: 71  GVATIPEGIALRQAGITAPILVLGSVNLPVQVQMMAQWQLQPTLSTPKQALIFSDYADRL 130

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L +DTG +RLG   Q+A+ F          ++  I SH A ADDP + +   Q
Sbjct: 131 REPLDVHLMIDTGMSRLGCPWQDAVGFVQFVQRLPHLRIQGIYSHFASADDPDASLMRQQ 190

Query: 179 LERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231
              F  +           +   +A+S+  L   + H+ + R G+SLYG      +    P
Sbjct: 191 QAYFEQVWEQISALGLGPVRRHMANSAATLANRSSHYDMVRIGLSLYGVYPASHLRGVVP 250

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+   +RI L+++  AG  +SYG Q    +   IAV  IGYADG P  LS       
Sbjct: 251 LRPVMQVRSRITLLKEIPAGTGISYGHQFIAPQPMKIAVVGIGYADGVPRLLSNKL---- 306

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                  +  ++G  +  +G ITMD  M D++D   ++ GD + + G D    + ++  A
Sbjct: 307 -------EVLVQGKRLRQVGAITMDQLMIDVSDMDGLQEGDVVTLLGEDGGDCLTVETWA 359

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
            A GT  +++L     R  + 
Sbjct: 360 EALGTITWEILCGFKNRLPRI 380


>gi|209522716|ref|ZP_03271274.1| alanine racemase [Arthrospira maxima CS-328]
 gi|209496765|gb|EDZ97062.1| alanine racemase [Arthrospira maxima CS-328]
          Length = 399

 Score =  402 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 119/384 (30%), Positives = 177/384 (46%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               +++D  A+ NN   +  L S   R  AV+K +AYG G   +A  +   GV DF V 
Sbjct: 24  HRAWVEVDRWAIANNVKQIRHLLSPETRLMAVIKADAYGHGAVSVAKIVSEIGVDDFAVA 83

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
           ++ EG++LR    Q  I VL  +H   E K I    L P + +  Q   +S+ L S   S
Sbjct: 84  TIPEGIELRRLGIQQPILVLGAVHTSDEIKAIAHWGLQPTLCTPTQALLFSETLQSIKRS 143

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P  L +DTG +RLG   ++AL+F          ++S I SH A AD     +   Q  R
Sbjct: 144 LPVQLNIDTGMSRLGTWWEQALEFVQLVRGLPNLEISGIYSHFATADIRDRTIMDQQHWR 203

Query: 182 FRTLISHYK-----------GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
           F+ +++  +                LA+S+  L  P  H+ + R G+SLYG     +   
Sbjct: 204 FQQVLAQIQEHTTLFSIPTVKPCLHLANSAATLTDPALHYDMVRVGLSLYGLYPAPHLRS 263

Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +Q  ++  AR+  I+   AG  VSYG +    + + IAV  IGYADG P  LS    
Sbjct: 264 VVNLQPAMSIRARVTQIKTIEAGCGVSYGYKFIAKQKTPIAVVGIGYADGVPRHLSNQM- 322

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                     K  I+G  VP +G ITMD  M D+T    ++VG+ + + G D    I  D
Sbjct: 323 ----------KVLIRGQFVPQIGAITMDQLMLDVTAIPDLQVGEVVTLLGSDRHHSISAD 372

Query: 345 DVALASGTTNYDLLVRIGTRYAKF 368
           D A   GT ++++L     R  + 
Sbjct: 373 DWAEQLGTISWEILCGFKHRLPRI 396


>gi|239825783|ref|YP_002948407.1| alanine racemase [Geobacillus sp. WCH70]
 gi|239806076|gb|ACS23141.1| alanine racemase [Geobacillus sp. WCH70]
          Length = 387

 Score =  402 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 153/382 (40%), Gaps = 29/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           SN F R    +IDL A+  N   +   L  + R  AVVK NAYG G  ++A     AG  
Sbjct: 2   SNLFYRDTWAEIDLDAIYYNVSQLKNFLQNDIRIMAVVKANAYGHGDVQVAKTALEAGAS 61

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              V  ++E + LR     A I VL    P    I     +   +     +   + + S 
Sbjct: 62  YLAVAFLDEAIALRKKGVTAPILVLGACRPSDINIAAKHRITLTVFQPEWIEQAANVYSE 121

Query: 119 GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                + L++DTG  RLG+  + E               L    +H A AD+ ++   S 
Sbjct: 122 TSPVLFHLKMDTGMGRLGVREETETKRVIEQIDRHPYFSLEGAYTHFATADEINTDYFSF 181

Query: 178 QLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHP 231
           Q + F  ++             +S+  L  P+  F + R GIS+YG +          + 
Sbjct: 182 QYDNFLRMLEWLPYKPPIIHCGNSATALRFPDKAFNMVRFGISMYGLSPSPEIKQYLPYE 241

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++   +  +R++ ++K   GE VSYG       +  +    IGYADG+   L        
Sbjct: 242 LKEAFSLHSRLVHVKKLKPGEKVSYGATYTAETEQWVGTVPIGYADGWLRKLQNF----- 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     + G   PI+G+I MD  M  +   + +  G  + + G      I +DDVA
Sbjct: 297 -------HVLVNGEKAPIIGRICMDQLMVRLPKQMPV--GTKVTLIGRQGDEYISVDDVA 347

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++   I  R  + +
Sbjct: 348 QYLGTINYEVPCTISYRVPRIF 369


>gi|260914151|ref|ZP_05920624.1| alanine racemase [Pasteurella dagmatis ATCC 43325]
 gi|260631784|gb|EEX49962.1| alanine racemase [Pasteurella dagmatis ATCC 43325]
          Length = 360

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK+N  ++   + NA+  AVVK NAYG G   ++ A+    V  F V  
Sbjct: 4   KPATAKISSVALKHNIQTIKQKAPNAKIIAVVKANAYGHGVVFVSEAVEKM-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ ++ QL    +         
Sbjct: 63  LEEALSLRSNGITKPILLLEGFFCTQDLPILAVNNIQTVVHNIEQLEAL-QSSDLPNPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG+ L +  +F     N      +   +SH + AD+  S   ++QL RF
Sbjct: 122 VWLKIDTGMHRLGVDLSQVDEFYQALKNTPNVDPNIGFVSHFSRADEIHSDYTALQLNRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240
               +  KG E S+A+S GIL   + H    RPGI +YG        + + +  V+T  +
Sbjct: 182 LQATADKKG-ERSIAASGGILFWEDSHLDWIRPGIIMYGIAPINVPAREYDLTPVMTLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I ++    GE V YGG     +D+ I V AIGY DGYP             +  G   
Sbjct: 241 SLISVKAHKKGEPVGYGGVWVSDKDTKIGVVAIGYGDGYPR-----------DIPTGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G  VPI+GK++MDM   D+      +VGD + ++G ++ ++++A  SG  +Y+L+ +
Sbjct: 290 YLNGRRVPIVGKVSMDMLTVDLGQDSQDKVGDEVILWGKELPIEEIAELSGVISYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVLTEYV 359


>gi|332970508|gb|EGK09497.1| alanine racemase [Desmospora sp. 8437]
          Length = 412

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/385 (27%), Positives = 170/385 (44%), Gaps = 28/385 (7%)

Query: 2   HSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
            SN + R     IDL A+ +N       L    R  A VK NAYG G   ++ A   AG 
Sbjct: 3   KSNRYFRDTVALIDLDAITHNVSQFRRRLPAGCRLMAAVKANAYGHGSVPVSRAALAAGA 62

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LM 116
            D  V  ++E ++LR     A I VL  I     +      +   +     +   ++   
Sbjct: 63  TDLAVAFLDEALELRAGGITAPILVLGHIPDRGIEPALKAGITLTVFDEAGVEKIAEVAA 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             G      ++VDTG  R+GL    A+ F           +  + +H A AD+       
Sbjct: 123 RTGRRARLHIKVDTGMGRIGLWEDAAVPFAERWARDPRVTVEGLFTHFATADEMDKSYAV 182

Query: 177 VQLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH- 230
            Q  RF  ++     +GI       A+S+  +  P +   + R GIS+YG       S  
Sbjct: 183 EQHGRFLRVLQQLQDRGIRIPVVHCANSAAAIDLPEWSHGMIRLGISMYGYYPSAQVSRV 242

Query: 231 --PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +T + RI+ +++  AG  +SYG    ++ +  IA   IGYADGY   LS    
Sbjct: 243 RVRLRPALTLKTRIVHLKRPPAGTGISYGKTAMVSGNQWIATLPIGYADGYSRQLSNR-- 300

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344
                    G   ++G  VP++G++ MD TM D+T ++ ++VGD + ++G     +I +D
Sbjct: 301 ---------GAALVRGRRVPVIGRVCMDQTMLDVTSAMPVKVGDEVVLYGKQGNEEIHVD 351

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +VA   GT +Y++   +G R  + Y
Sbjct: 352 EVADLLGTISYEITCMLGHRVPRLY 376


>gi|253682108|ref|ZP_04862905.1| alanine racemase [Clostridium botulinum D str. 1873]
 gi|253561820|gb|EES91272.1| alanine racemase [Clostridium botulinum D str. 1873]
          Length = 387

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 101/380 (26%), Positives = 166/380 (43%), Gaps = 26/380 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I+L  L +N   +  +S + +   +VK +AYG G   +AP L   G     V  
Sbjct: 6   RPVWAEINLDNLASNMKEIKKISSSKKIIGIVKADAYGHGALDVAPTLIENGATGLAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHP 123
           + EGV+LR    +  I VL    P     +   ++   + S+      S++         
Sbjct: 66  INEGVELRRSGIECPIMVLGFTAPTLIDTLLRHDIEQTVFSLEYAKQLSEVAEKMHKKIK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG  R+G    +E++            ++  I +H + AD+ +      QL++F
Sbjct: 126 IHIAVDTGMGRIGFLPNKESVQDVKKISKLPNVEIKGIFTHFSTADESNKEYTYYQLKKF 185

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
                  K          +A+S+ I+      F+  RPGI LYG             ++ 
Sbjct: 186 NEFYDELKKENVNIETRHIANSAAIMELSETQFEGVRPGIILYGYYPSDEVDKSKLKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  +  I+ I+K  +G+ +SYG + K  R+S+IA   +GYADGY   L           
Sbjct: 246 VMELKTNIVHIKKISSGQYISYGRKFKTERESIIATLPVGYADGYTRLLFN--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD----IKLDDVALA 349
               K  I G   PI+G+I MD  M DITD    +++GD + + G +    I  DD+A  
Sbjct: 297 --KAKVIINGQFAPIIGRICMDQCMVDITDIKGDVKLGDEVILMGQENGIKIDADDIASM 354

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  I  R  + Y
Sbjct: 355 LGTINYEVVCMISKRVPRVY 374


>gi|260858163|ref|YP_003232054.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O26:H11 str. 11368]
 gi|257756812|dbj|BAI28314.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O26:H11 str. 11368]
 gi|323155607|gb|EFZ41782.1| alanine racemase [Escherichia coli EPECa14]
          Length = 365

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|317133520|ref|YP_004092834.1| alanine racemase [Ethanoligenens harbinense YUAN-3]
 gi|315471499|gb|ADU28103.1| alanine racemase [Ethanoligenens harbinense YUAN-3]
          Length = 393

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 92/384 (23%), Positives = 168/384 (43%), Gaps = 30/384 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    ++DL  ++ N+ ++ A +S  ++   +VK + YG G   +A A  +AG   F V+
Sbjct: 6   KRTWAEVDLDKIEANYLAIRAYVSPQSKIMTIVKADGYGHGAPFVAKAFDDAGTDWFGVS 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
           ++EE  +LR+   +  I +L    P    ++    +   + S+      S      G + 
Sbjct: 66  NIEEAEQLRIAGIEKPILILGYTPPEFAGMLIKQRVTQTLFSMEYGEQLSAAAKEAGGTV 125

Query: 123 PYALQVDTGFNRLGL---SLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNS 176
              L++DTG +R+G      ++A     +   +      ++  + +H A +D+P +    
Sbjct: 126 DVHLKLDTGMSRIGFLFHGEEDAPALLQDGAAAAALPNLRIDGVFTHFAVSDEPGNPFTR 185

Query: 177 VQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q ERF   ++  +  G+        +S+G+L  P     + RPGI LYG T  +    P
Sbjct: 186 TQFERFIRAVALLEEQGLRFSLRHCCNSAGLLNYPEMQLDMVRPGIILYGLTPAVGMPLP 245

Query: 232 M--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           +  Q  +  +  +   +    G  VSYG   +      +    IGYADGY  +LS     
Sbjct: 246 IELQPAMALKTMLFQTKTLTPGTPVSYGMIYRTPSARRVGTLPIGYADGYARSLSDR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       I G    I+G++ MD  M D+TD  + + GD + + G D    + +++
Sbjct: 303 --------ADVLIHGKRARIVGRVCMDQCMADVTDIPNAQSGDVVTVIGRDGGETVSMEE 354

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY+    IG R  + +
Sbjct: 355 IAAQMGTINYETACLIGKRVPRVF 378


>gi|228991111|ref|ZP_04151071.1| Alanine racemase [Bacillus pseudomycoides DSM 12442]
 gi|228768647|gb|EEM17250.1| Alanine racemase [Bacillus pseudomycoides DSM 12442]
          Length = 391

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 96/376 (25%), Positives = 169/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++++L A+K+N         +      A VK N YG G  ++A A   AGV    V  V+
Sbjct: 11  VEVNLDAVKHNVREFKKRVNDKNIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           EG++LR       I VL        K     +++  +  +  L   +++           
Sbjct: 71  EGIELREAGVTVPILVLGYTPVDVAKDAIGYDIMMTVYRIEDLKGINEIAKQLEKKAHIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F     N K  ++  + +H + AD+ +    ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVAPFLEELKNMKYIEIEGMFTHYSTADEINKTYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K ++  L     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTAKEMDIHLPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHTVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKLAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
           G   I G  VP+LG++ MD  M D+T ++ ++VGD +  +G     +I ++++A   GT 
Sbjct: 300 GHALINGIRVPVLGRVCMDQLMLDVTKAMPVQVGDEVVFYGRQGEEEISVEEIADTLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|255523385|ref|ZP_05390354.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|296184669|ref|ZP_06853080.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|255512843|gb|EET89114.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|296050451|gb|EFG89874.1| alanine racemase [Clostridium carboxidivorans P7]
          Length = 386

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/384 (28%), Positives = 172/384 (44%), Gaps = 26/384 (6%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N     +++DL  L  N  S+   S +     VVK +AYG G  ++AP L   G   
Sbjct: 1   MFRNFRSTWVEVDLDNLTYNMKSIRKKSKSKELIGVVKADAYGHGALEVAPVLLENGATR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  + EG++LR       I +L          + + ++ P ++S    +  SK     
Sbjct: 61  LAVAVLSEGIELRKSGISCHIMILGLTPNTLMDDLLEYDIEPAVTSYEYASELSKAAQAK 120

Query: 120 -VSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  + VDTG  R+G    +++++  +        ++  + SH   AD+     +  
Sbjct: 121 DKVAKIHVAVDTGMGRIGFLPNEDSIEEVYKISKLPNIEIESLFSHFCTADELDKDYSHK 180

Query: 178 QLERFRTLISHY--KGIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q E++         KG++ +   +A+S+ I+  P  H++  RPGI LYG          M
Sbjct: 181 QFEKYNYFCEKLQEKGVKINMRDIANSAAIMELPETHYEGARPGIILYGYYPSTEVDKKM 240

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              + V+T +A I+ I+    GE + YG + +  R S+IA   +GYADGY   LSG    
Sbjct: 241 LDIKPVMTWKADIMHIKTLEKGEYIGYGRKFRTERKSVIATLPVGYADGYTRMLSG---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDD 345
                    K  I G   P++G I MD  M DIT+   ++VGD + + G D      +DD
Sbjct: 297 -------KAKVIINGKFAPVVGNICMDQCMIDITEIEDVKVGDEVILMGSDGTLKFDVDD 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY+LL  I  R  + Y
Sbjct: 350 MAPMLGTINYELLCMISKRVPRVY 373


>gi|222529882|ref|YP_002573764.1| alanine racemase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456729|gb|ACM60991.1| alanine racemase [Caldicellulosiruptor bescii DSM 6725]
          Length = 390

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 95/379 (25%), Positives = 161/379 (42%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            +  +IDL  L  N  ++   +    +  AVVK +AYG G  +I+  L   GV    V  
Sbjct: 9   RVWAEIDLDNLVYNLENIKKKILPQTKIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAI 68

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           ++E ++LR +     I +L        + + + ++   + +  Q  + S+     G +  
Sbjct: 69  IDEALQLRHFNFDVPILILGFTPFELSEQVVENDISQTVYTYEQAYYLSQAAQKIGKNAK 128

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLER 181
             ++VDTG  R+G     E++    N       +L  I SH  +  D  S      Q  +
Sbjct: 129 IHIKVDTGMGRIGFLCCDESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFMK 188

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F   +              +A+SS  +  P Y   + R G+ LYG      + +   ++ 
Sbjct: 189 FEKFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHISIKP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+    S          
Sbjct: 249 VMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRIGSSQR------- 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
                  IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A   
Sbjct: 302 ----YVLIKGEFAKVIGNICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQI 357

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++     R  + Y
Sbjct: 358 GTINYEIVCSFSKRIPRVY 376


>gi|218707674|ref|YP_002415193.1| alanine racemase [Escherichia coli UMN026]
 gi|293402691|ref|ZP_06646788.1| alanine racemase [Escherichia coli FVEC1412]
 gi|293407785|ref|ZP_06651625.1| alanine racemase [Escherichia coli B354]
 gi|298378219|ref|ZP_06988103.1| alanine racemase [Escherichia coli FVEC1302]
 gi|300899831|ref|ZP_07118045.1| alanine racemase [Escherichia coli MS 198-1]
 gi|218434771|emb|CAR15704.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           UMN026]
 gi|284924146|emb|CBG37245.1| alanine racemase [Escherichia coli 042]
 gi|291429606|gb|EFF02620.1| alanine racemase [Escherichia coli FVEC1412]
 gi|291472036|gb|EFF14518.1| alanine racemase [Escherichia coli B354]
 gi|298280553|gb|EFI22054.1| alanine racemase [Escherichia coli FVEC1302]
 gi|300356602|gb|EFJ72472.1| alanine racemase [Escherichia coli MS 198-1]
          Length = 359

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCDATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|158334044|ref|YP_001515216.1| alanine racemase [Acaryochloris marina MBIC11017]
 gi|158304285|gb|ABW25902.1| alanine racemase, putative [Acaryochloris marina MBIC11017]
          Length = 386

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 176/377 (46%), Gaps = 26/377 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E   + IDL AL+NN   +   L       AVVK + YG G   +A      G     V 
Sbjct: 13  ERAWVNIDLKALENNVRQIKQQLLPQTALMAVVKADGYGHGAVTVAQTALANGATWLGVA 72

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++ EG++LR     A I +L   H  QE + I    L P + S  Q   +S+ +      
Sbjct: 73  TILEGIELRQADINAPILILGATHTVQEIEAIVRWQLQPTLCSPEQALIFSRHLQ--HPL 130

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P  L+VDTG +RLG   Q+   F          +++ I SHLA ADD  S     Q  R 
Sbjct: 131 PIHLKVDTGMSRLGPIWQQGATFIEFVSRLPNLKIASIYSHLATADDADSSFMLQQQSRL 190

Query: 183 RTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTV 235
           + ++S  +       +  LA+S+G L+GP +H+ L R G++LYG        ++  +Q V
Sbjct: 191 QDVLSRIQAQDIPLPKLHLANSAGTLVGPQFHYDLVRVGLALYGLYPAPHFQQAIALQPV 250

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +ARI  I+   AG  VSY       +   +AV  IGYADG P +LS   +       
Sbjct: 251 MQVKARITQIKTLPAGSGVSYNHTFTTEQPLTVAVVGIGYADGVPRSLSNQMN------- 303

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 I+G + P +G ITMD  M D++D  +++VG+ + I G D    I  +  A A G
Sbjct: 304 ----VIIRGRLAPQIGAITMDQLMVDVSDVPNLQVGEVVTILGQDGKASISAETWADALG 359

Query: 352 TTNYDLLVRIGTRYAKF 368
           T +Y+++     R  + 
Sbjct: 360 TISYEIVCGFKHRLPRI 376


>gi|20141177|sp|P54918|ALR_SYNY3 RecName: Full=Alanine racemase
          Length = 372

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 170/379 (44%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++ID  AL +N               AVVK +AYG G  ++A     AG     +
Sbjct: 3   RQRAWVEIDQAALVHNVRQFRQYVGPKTNLMAVVKADAYGHGAVRVAQTALQAGADWLAI 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
            ++ EG++LR     A I +L GI+ P + + I    L P + S  Q   ++  L+  G 
Sbjct: 63  ATLGEGIELREAGITAPILLLGGINSPEEIEAIAHWRLQPTLCSPEQAQLFNDILLKLGK 122

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             P  L++DTG  RLG    +A +F     +    +L+ + SHLA ADDP++     Q E
Sbjct: 123 VLPVHLKLDTGMTRLGTPWPQAANFVGLVQSLPQLRLASLYSHLATADDPNTATMLQQQE 182

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233
           RF   I+  +       +  LA+S+  L G  +H+ + R G+ LYG     +      ++
Sbjct: 183 RFAKAIASLRQARLPIPKLHLANSAATLHGQAWHYDMVRVGLGLYGLYPAPHLGDCLDLK 242

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  A+I  IR    G  VSYG Q        +AV  IGYADG P  LS         
Sbjct: 243 PVLTVRAKITQIRTIPPGTGVSYGHQFVSEETMPMAVVGIGYADGVPRNLSNQL------ 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  ++G  V  +G ITMD  M D+      +VG+ + + G D    I  D  A  
Sbjct: 297 -----EVLLRGQPVRQIGAITMDQMMVDLRGIDDPQVGEVVTLIGQDGDRQITADHWAST 351

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT ++++L     R  + 
Sbjct: 352 LGTISWEILCGFKHRLPRI 370


>gi|218556610|ref|YP_002389524.1| alanine racemase [Escherichia coli IAI1]
 gi|218363379|emb|CAR01032.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           IAI1]
          Length = 359

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 174/368 (47%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +      I      Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSIGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|218692336|ref|YP_002400548.1| alanine racemase [Escherichia coli ED1a]
 gi|331660619|ref|ZP_08361551.1| alanine racemase [Escherichia coli TA206]
 gi|218429900|emb|CAR10727.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           ED1a]
 gi|331051661|gb|EGI23700.1| alanine racemase [Escherichia coli TA206]
          Length = 359

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLNEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|302874151|ref|YP_003842784.1| alanine racemase [Clostridium cellulovorans 743B]
 gi|307689590|ref|ZP_07632036.1| alanine racemase [Clostridium cellulovorans 743B]
 gi|302577008|gb|ADL51020.1| alanine racemase [Clostridium cellulovorans 743B]
          Length = 386

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 161/379 (42%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I+L  L +N   +  ++      AVVK + YG G    +  L   G     V  
Sbjct: 6   RPVWAEINLDNLAHNMREIKKITRAKDIIAVVKADGYGHGAIDTSKILLENGATALAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123
           + E V+LR    +  I +L          +   ++ P + +       S +         
Sbjct: 66  ISEAVELRRNGIKCPIMILGYTPTIYGDSLVKYDISPTVFTYEYAKELSDIAKAEDKIIK 125

Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G      +++  +         +  I SH + +D+ +      QL+++
Sbjct: 126 IQVALDTGMGRIGFMPDKNSVEEVYKISKLPNISIEGIFSHFSTSDEANKKFTLEQLKKY 185

Query: 183 RTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQT 234
              I +   +GI      +A+S+ I+   + HF+  R GI +YG       +     ++ 
Sbjct: 186 EDFIHNLEERGINIKIRHIANSAAIIDLKDTHFEAVRSGIIMYGYYPSKEVNVSKLLLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T +  II ++K      +SYG   K  ++ +IA   +GYADGY   LS          
Sbjct: 246 VMTLKTNIIHVKKLPKDYSISYGRTYKTQKEEIIATLPVGYADGYTRQLS---------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
               +  I G + P++G+I MD  M ++TD   +++GD + + G      +  DD+A   
Sbjct: 296 -DKAQVIINGKLAPVVGRICMDQCMVNVTDIDDVKIGDEVILMGQCDNVKMDADDIAGLL 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY+++  IG R  + Y
Sbjct: 355 ETINYEVVCMIGKRVPRVY 373


>gi|163816712|ref|ZP_02208075.1| hypothetical protein COPEUT_02902 [Coprococcus eutactus ATCC 27759]
 gi|158447969|gb|EDP24964.1| hypothetical protein COPEUT_02902 [Coprococcus eutactus ATCC 27759]
          Length = 387

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 95/384 (24%), Positives = 174/384 (45%), Gaps = 27/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M +   ++  I+L  +++N  +M +L   + +  AV+K +AYG G  ++A AL +  V  
Sbjct: 1   MRNYNRVQAVINLDNIRHNVAAMKSLVDKDKKMLAVIKADAYGHGAVEVAHALNDM-VDF 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           F V  ++E ++LR    +  I +L    P   K++ D ++ P I  V      S+  +  
Sbjct: 60  FAVAFIDEAIELRNAGFKKPILILGYTDPEDYKLLIDFDVRPAIYDVDDARKLSETAVGK 119

Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      ++VDTG  R+G S  +A +            ++  + +H A AD+        
Sbjct: 120 GAKAKIHIKVDTGMGRIGFSCDDAGVKHIEEISRMPGIEIEGMFTHYAKADELDKTAAKG 179

Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-- 230
           QL++FR +    +          +++S+GI+   N  F + R GI  YG           
Sbjct: 180 QLDKFRWINRQLEDKHIYIPVRHISNSAGIMEMDNSDFDMVRSGIVTYGLYPSEEVDKSI 239

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  ++  +++I ++   AG  + YG       D  +A  + GYADGYP   S +   
Sbjct: 240 VDLRPAMSLTSKVIFVKDVKAGTGIGYGWSYIADHDIRVATVSAGYADGYPRAQSNI--- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G+  I G   PI+G++ MD  M D++    ++V D + + G      I +++
Sbjct: 297 --------GRVIIHGQYAPIIGRVCMDQFMVDVSHIDDVKVRDDVILIGRAGDKVITVEE 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA  + + NY+L+  I  R  + Y
Sbjct: 349 VAEPANSFNYELVCNISRRVPREY 372


>gi|228997192|ref|ZP_04156817.1| Alanine racemase [Bacillus mycoides Rock3-17]
 gi|229004853|ref|ZP_04162583.1| Alanine racemase [Bacillus mycoides Rock1-4]
 gi|228756406|gb|EEM05721.1| Alanine racemase [Bacillus mycoides Rock1-4]
 gi|228762586|gb|EEM11508.1| Alanine racemase [Bacillus mycoides Rock3-17]
          Length = 391

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 96/376 (25%), Positives = 168/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++++L A+K+N         +      A VK N YG G  ++A A   AGV    V  V+
Sbjct: 11  VEVNLDAVKHNVREFKKRVNDKNIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           EG++LR       I VL        K     +++  +  +  L   +++           
Sbjct: 71  EGIELREAGVTVPILVLGYTPVEVAKDAIGYDIMMTVYRIEDLKGINEIAKQLEKKAHIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F     N K  ++  + +H + AD+ +    ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVAPFLEELKNMKYIEIEGMFTHYSTADEINKIYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   L     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNAAKEMGIHLPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHTVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
           G   I G  VP+LG++ MD  M D+T ++ ++VGD +  +G     +I ++++A   GT 
Sbjct: 300 GHALINGIRVPVLGRVCMDQLMLDVTKAMPVQVGDEVVFYGRQGEEEISVEEIADTLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|331655873|ref|ZP_08356861.1| alanine racemase [Escherichia coli M718]
 gi|331046227|gb|EGI18317.1| alanine racemase [Escherichia coli M718]
          Length = 359

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGSTEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|261418553|ref|YP_003252235.1| alanine racemase [Geobacillus sp. Y412MC61]
 gi|319765367|ref|YP_004130868.1| alanine racemase [Geobacillus sp. Y412MC52]
 gi|261375010|gb|ACX77753.1| alanine racemase [Geobacillus sp. Y412MC61]
 gi|317110233|gb|ADU92725.1| alanine racemase [Geobacillus sp. Y412MC52]
          Length = 384

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 158/378 (41%), Gaps = 26/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++IDL A+ +N  ++   L G  +  AVVK NAYG G  ++A     AG     V
Sbjct: 5   HRDTWVEIDLDAIYDNVANLRRFLPGGTQIMAVVKANAYGHGDAQVAATALEAGASRLAV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR     A I VL    P    +  +  +   +     L   S L +     
Sbjct: 65  AFLDEALALRKKGIDAPILVLGASRPEDVALAAEHRIALTVFRSDWLEKASSLYNGSTPI 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
            + L++DTG  RLG+  +E         ++     L  + +H A AD+ ++   S Q  R
Sbjct: 125 HFHLKMDTGMGRLGVKDEEETKRIAALIDRHPPFVLEGVYTHFATADEVNTDYFSYQYAR 184

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           F  ++            A+S+  L   +  F + R GIS+YG     +      + ++  
Sbjct: 185 FLHMLDWLPSRPPLVHCANSAAALRFSDRAFNMVRFGISMYGLAPSPDIKPLLPYELKEA 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VSYG       +  I    IGYADG+   L            
Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  + + L +  G  + + G      I +DDVA   G
Sbjct: 296 ---HVLVGGQRAPIVGRICMDQCMIRLPEPLPV--GTKVTLIGRQGDEVISIDDVARHLG 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 351 TINYEVPCTISYRVPRIF 368


>gi|74314547|ref|YP_312966.1| alanine racemase [Shigella sonnei Ss046]
 gi|20137404|sp|Q93HP9|ALR1_SHISO RecName: Full=Alanine racemase, biosynthetic
 gi|16610221|dbj|BAB71773.1| alanine racemase [Shigella sonnei]
 gi|73858024|gb|AAZ90731.1| alanine racemase 1 [Shigella sonnei Ss046]
 gi|323164550|gb|EFZ50351.1| alanine racemase [Shigella sonnei 53G]
          Length = 359

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 173/368 (47%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +      I      Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSIGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|91791886|ref|YP_561537.1| alanine racemase [Shewanella denitrificans OS217]
 gi|122968993|sp|Q12RW2|ALR_SHEDO RecName: Full=Alanine racemase
 gi|91713888|gb|ABE53814.1| alanine racemase [Shewanella denitrificans OS217]
          Length = 363

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 173/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP--ALYNAGVQDFFV 62
            F R +I   AL+ N   +  L+  ++  AVVK N YG G   +A   A Y+ G   F +
Sbjct: 3   PFPRAEISRKALQANLARIRELAPQSKIMAVVKANGYGHGLLNVANSVATYDQGADGFGL 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             +EE ++LR     AR+ +L G        ++   ++  V+    Q+    +       
Sbjct: 63  ARLEEALELRSGGVNARLLLLEGFFRVTDLPLLVQHHIDTVVHHESQVEMLEQA-ELTTP 121

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               +++DTG +RLG SL +             + +   +++H AC+D+P +     Q++
Sbjct: 122 VTVWMKIDTGMHRLGFSLAQFDAIYQRLLACHNIAKPIHLMTHFACSDEPDNSFTQAQID 181

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVT 237
            F ++ +   G + SLA+S G+L  P       R GI+LYG +  +            + 
Sbjct: 182 AFESVTASLDG-DRSLANSGGMLFWPQSQRDWIRAGIALYGVSPMVGDKGGNHGLVPAME 240

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++I ++   AG+ V YG   +  +D+ I V AIGY DGYP                G
Sbjct: 241 LKSQLISVKDHQAGDSVGYGAFWRARKDTRIGVVAIGYGDGYPRHA-----------PEG 289

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              ++ G  VPI+G+++MDM   D+      +VGD + ++G  + +++VA   GT  Y+L
Sbjct: 290 TPVWLNGRRVPIVGRVSMDMLTVDLGLDSQDKVGDEVLLWGSALAVEEVADHIGTIAYEL 349

Query: 358 LVRIGTRYA 366
           + ++  R A
Sbjct: 350 VTKLTPRVA 358


>gi|148550379|ref|YP_001270481.1| alanine racemase [Pseudomonas putida F1]
 gi|148514437|gb|ABQ81297.1| alanine racemase [Pseudomonas putida F1]
          Length = 357

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 173/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A + +L G     E  +I + +L  V+ S+ QL    K         
Sbjct: 60  IEEALELRAAGINAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEK-TPLHKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++  D              +++SH A AD+  +   + Q+  F 
Sbjct: 119 VWLKLDSGMHRVGLHPKDYHDAYQRLLASGKVSRIVLMSHFARADELDADATAQQIAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
                    E SL +S G+L  P       RPG+ LYG T       ++  +Q V+T ++
Sbjct: 179 AARQGLAA-ECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPVMTLQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +R+  AGE V YG +   +R + + V A+GYADGYP                G   
Sbjct: 238 RVISVRELPAGEPVGYGAKFVSSRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+TD     VG  ++++G  +   +VA  +GT  Y +   
Sbjct: 287 LVAGKRTHLIGRVSMDMLSIDLTDVPQATVGSPVELWGKQVLASEVAAQAGTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRVPRDYV 355


>gi|110802018|ref|YP_698177.1| alanine racemase [Clostridium perfringens SM101]
 gi|123146221|sp|Q0SUN0|ALR_CLOPS RecName: Full=Alanine racemase
 gi|110682519|gb|ABG85889.1| alanine racemase [Clostridium perfringens SM101]
          Length = 386

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 93/380 (24%), Positives = 152/380 (40%), Gaps = 27/380 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  
Sbjct: 6   RPVWAEIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           + E  +LR     A I +L        + + +  +   +  V      S   +  G    
Sbjct: 66  ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER- 181
             + +DTG  R+G    +E L+      +    ++  + +H + +D+        Q  + 
Sbjct: 126 IHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVVGLFTHFSTSDEKDKTYTYEQFSKL 185

Query: 182 --FRTLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233
             F   +    GI       ++S  I+  P  +    R GI  YG         ++  ++
Sbjct: 186 TNFNKALED-NGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T +  +  +++      VSYG   K  + S IA   IGYADGY   LSG        
Sbjct: 245 PALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG-------- 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                K  IKG    ++G++ MD  M D+T    +++GD + + G +       +D+A  
Sbjct: 297 ---KAKVIIKGQFANVIGRVCMDQCMVDVTHIEDVKIGDEVILLGEENGLKFDANDMAEI 353

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY++L  I  R  + Y
Sbjct: 354 MGTINYEILCMISHRVPRIY 373


>gi|94971247|ref|YP_593295.1| alanine racemase [Candidatus Koribacter versatilis Ellin345]
 gi|94553297|gb|ABF43221.1| alanine racemase [Candidatus Koribacter versatilis Ellin345]
          Length = 411

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 97/389 (24%), Positives = 185/389 (47%), Gaps = 33/389 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +      ++DL+AL++N+ ++++  +  A+  AVVK +AYG G  + A AL   G + F 
Sbjct: 27  NTRPTWAEVDLSALRHNYRTLSSHVAPKAQICAVVKCDAYGHGALECAQALEAEGAKWFG 86

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--G 119
           VT+  E + LR    + RI +L G   G+E+ + + +  P + +   + +          
Sbjct: 87  VTNPSEALVLRRGGIKGRILLLSGFWQGEEESVLEHDFTPAVWTEGHVAWLDAAAKRFGR 146

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              P  L++DTG +RLG+   E        F  +   +  + SHLA ++   +     Q+
Sbjct: 147 TKVPVHLKIDTGMSRLGVRWNELPTLLPKLFRARRLSIEGVWSHLASSEVVDAFDAQAQI 206

Query: 180 ERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYG----------GTD 224
             F   +++      K     LA+S+ + + P+  + + RPG+ LYG           + 
Sbjct: 207 ANFEQALTYLADEGVKWKYRHLANSAAVAVRPSTWYDMVRPGLLLYGHCLPLTHTNHVSP 266

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            ++    ++ V++ + R++ IR+  AG+ V YG      + SL+A   +GY DGY   LS
Sbjct: 267 DVHLQLALKPVLSWKTRVVDIRRVPAGQGVGYGSTFTTRKPSLLATIPVGYGDGYLRALS 326

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                        G+  ++G   PI G ++MD+T+ D++    + VGD + + G D    
Sbjct: 327 N-----------KGRALVRGEYAPIAGNVSMDLTIIDVSRIPGVAVGDEVTLIGRDGEKS 375

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I+++++A    +  Y+++  I  R  + Y
Sbjct: 376 IEIEELARHYQSIAYEVMCGISKRVPRKY 404


>gi|26991945|ref|NP_747370.1| alanine racemase [Pseudomonas putida KT2440]
 gi|24987073|gb|AAN70834.1|AE016728_3 alanine racemase, catabolic [Pseudomonas putida KT2440]
          Length = 357

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/369 (28%), Positives = 172/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ S+ QL    K         
Sbjct: 60  IEEALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEK-TPLHKPLN 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++  D              ++++H A AD+  +   S Q+  F 
Sbjct: 119 VWLKLDSGMHRVGLHPKDYHDAYQRLLASGKVSRIVLMTHFARADELDADATSQQIAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
                    E SL +S G+L  P       RPG+ LYG T       ++  +Q V+T ++
Sbjct: 179 AARQGLAA-ECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPVMTLQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+TD     VG  ++ +G  +   +VA  +GT  Y +   
Sbjct: 287 LVAGKRTQLIGRVSMDMLSIDLTDVPQATVGSPVEFWGKQVLASEVAAHAGTIPYQIFCN 346

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 347 L-KRVPRDY 354


>gi|210612599|ref|ZP_03289390.1| hypothetical protein CLONEX_01592 [Clostridium nexile DSM 1787]
 gi|210151524|gb|EEA82531.1| hypothetical protein CLONEX_01592 [Clostridium nexile DSM 1787]
          Length = 388

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 161/386 (41%), Gaps = 27/386 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M +   +  KIDL A+  N   M   +    +  AV+K + YG G  +IA  +     + 
Sbjct: 1   MKTYSRVYAKIDLDAIAYNMEQMKQNIRPETKVMAVIKADGYGHGAVQIAEMMERWNYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMS 117
            F V +++E V LR    Q  I VL  + P Q   +    +   I +       S+    
Sbjct: 61  GFAVATLDEAVVLRTEGIQKPILVLGCVFPDQYMEMLKHEIRMNIYTEEMAESISRMAAR 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +    +++DTG +RLG  + +++ +            +  I +H   AD+       
Sbjct: 121 EGKTAYMHIKLDTGMSRLGFGINEQSAETIKRISKMPNVNMEGIFTHFTKADEKDKSFTK 180

Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q++ F  +    K           ++S+GI+  P  +F + R GIS YG          
Sbjct: 181 KQIQEFVWMTERLKEKNVRFTYEHCSNSAGIIDVPEANFDIVRAGISTYGLYPSEEVDKT 240

Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               +  +  ++ +  +++   G  VSYGG         IA   +GYADGYP +LS    
Sbjct: 241 NVKLKPALALKSHVAFVKEIERGTPVSYGGTFVAKEKMKIATIPVGYADGYPRSLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G   PILG++ MD  M D+T    +  GD + + G D    + ++
Sbjct: 298 --------KGYVLIRGKKAPILGRVCMDQFMVDVTQIEGVSFGDKVTMIGKDGNEILPVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370
            ++  SG  NY+ +  +G R  + Y 
Sbjct: 350 VLSELSGRFNYEFVCDLGKRIPRVYV 375


>gi|331650063|ref|ZP_08351136.1| alanine racemase [Escherichia coli M605]
 gi|330908377|gb|EGH36896.1| alanine racemase, biosynthetic [Escherichia coli AA86]
 gi|331041008|gb|EGI13165.1| alanine racemase [Escherichia coli M605]
          Length = 359

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  +        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-NLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|16131879|ref|NP_418477.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24115357|ref|NP_709867.1| alanine racemase [Shigella flexneri 2a str. 301]
 gi|30064642|ref|NP_838813.1| alanine racemase [Shigella flexneri 2a str. 2457T]
 gi|89110774|ref|AP_004554.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K-12 substr. W3110]
 gi|91213579|ref|YP_543565.1| alanine racemase [Escherichia coli UTI89]
 gi|110807930|ref|YP_691450.1| alanine racemase [Shigella flexneri 5 str. 8401]
 gi|117626323|ref|YP_859646.1| alanine racemase [Escherichia coli APEC O1]
 gi|157163522|ref|YP_001460840.1| alanine racemase [Escherichia coli HS]
 gi|170021949|ref|YP_001726903.1| alanine racemase [Escherichia coli ATCC 8739]
 gi|170083510|ref|YP_001732830.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170680683|ref|YP_001746442.1| alanine racemase [Escherichia coli SMS-3-5]
 gi|188492399|ref|ZP_02999669.1| alanine racemase [Escherichia coli 53638]
 gi|191168796|ref|ZP_03030572.1| alanine racemase [Escherichia coli B7A]
 gi|194437323|ref|ZP_03069421.1| alanine racemase [Escherichia coli 101-1]
 gi|209921537|ref|YP_002295621.1| alanine racemase [Escherichia coli SE11]
 gi|215489388|ref|YP_002331819.1| alanine racemase [Escherichia coli O127:H6 str. E2348/69]
 gi|218561126|ref|YP_002394039.1| alanine racemase [Escherichia coli S88]
 gi|218697761|ref|YP_002405428.1| alanine racemase [Escherichia coli 55989]
 gi|218702717|ref|YP_002410346.1| alanine racemase [Escherichia coli IAI39]
 gi|237703613|ref|ZP_04534094.1| alanine racemase 1 [Escherichia sp. 3_2_53FAA]
 gi|238903162|ref|YP_002928958.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           BW2952]
 gi|253775319|ref|YP_003038150.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037050|ref|ZP_04871127.1| alanine racemase 1 [Escherichia sp. 1_1_43]
 gi|254163989|ref|YP_003047097.1| alanine racemase [Escherichia coli B str. REL606]
 gi|256024926|ref|ZP_05438791.1| alanine racemase [Escherichia sp. 4_1_40B]
 gi|260870812|ref|YP_003237214.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O111:H- str. 11128]
 gi|293476357|ref|ZP_06664765.1| alanine racemase [Escherichia coli B088]
 gi|300817971|ref|ZP_07098184.1| alanine racemase [Escherichia coli MS 107-1]
 gi|300823594|ref|ZP_07103722.1| alanine racemase [Escherichia coli MS 119-7]
 gi|300906364|ref|ZP_07124062.1| alanine racemase [Escherichia coli MS 84-1]
 gi|300917299|ref|ZP_07133972.1| alanine racemase [Escherichia coli MS 115-1]
 gi|300924316|ref|ZP_07140295.1| alanine racemase [Escherichia coli MS 182-1]
 gi|300929792|ref|ZP_07145244.1| alanine racemase [Escherichia coli MS 187-1]
 gi|300938190|ref|ZP_07152960.1| alanine racemase [Escherichia coli MS 21-1]
 gi|300946625|ref|ZP_07160884.1| alanine racemase [Escherichia coli MS 116-1]
 gi|300957537|ref|ZP_07169744.1| alanine racemase [Escherichia coli MS 175-1]
 gi|301019191|ref|ZP_07183389.1| alanine racemase [Escherichia coli MS 196-1]
 gi|301302732|ref|ZP_07208861.1| alanine racemase [Escherichia coli MS 124-1]
 gi|301645041|ref|ZP_07245004.1| alanine racemase [Escherichia coli MS 146-1]
 gi|306815836|ref|ZP_07449981.1| alanine racemase [Escherichia coli NC101]
 gi|307140743|ref|ZP_07500099.1| alanine racemase [Escherichia coli H736]
 gi|307312105|ref|ZP_07591742.1| alanine racemase [Escherichia coli W]
 gi|309795859|ref|ZP_07690273.1| alanine racemase [Escherichia coli MS 145-7]
 gi|312965646|ref|ZP_07779875.1| alanine racemase [Escherichia coli 2362-75]
 gi|312974153|ref|ZP_07788324.1| alanine racemase [Escherichia coli 1827-70]
 gi|331644794|ref|ZP_08345911.1| alanine racemase [Escherichia coli H736]
 gi|331670916|ref|ZP_08371750.1| alanine racemase [Escherichia coli TA271]
 gi|331680183|ref|ZP_08380842.1| alanine racemase [Escherichia coli H591]
 gi|331680983|ref|ZP_08381620.1| alanine racemase [Escherichia coli H299]
 gi|67462106|sp|P0A6B4|ALR1_ECOLI RecName: Full=Alanine racemase, biosynthetic
 gi|67462107|sp|P0A6B5|ALR1_SHIFL RecName: Full=Alanine racemase, biosynthetic
 gi|67462108|sp|P0A6B6|ALR1_SHIBO RecName: Full=Alanine racemase, biosynthetic
 gi|1790487|gb|AAC77023.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K-12 substr. MG1655]
 gi|16610217|dbj|BAB71771.1| alanine racemase [Shigella boydii]
 gi|24054663|gb|AAN45574.1| alanine racemase 1 [Shigella flexneri 2a str. 301]
 gi|30042901|gb|AAP18624.1| alanine racemase 1 [Shigella flexneri 2a str. 2457T]
 gi|85676805|dbj|BAE78055.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K12 substr. W3110]
 gi|91075153|gb|ABE10034.1| alanine racemase 1 [Escherichia coli UTI89]
 gi|110617478|gb|ABF06145.1| alanine racemase 1 [Shigella flexneri 5 str. 8401]
 gi|115515447|gb|ABJ03522.1| alanine racemase 1 [Escherichia coli APEC O1]
 gi|157069202|gb|ABV08457.1| alanine racemase [Escherichia coli HS]
 gi|169756877|gb|ACA79576.1| alanine racemase [Escherichia coli ATCC 8739]
 gi|169891345|gb|ACB05052.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170518401|gb|ACB16579.1| alanine racemase [Escherichia coli SMS-3-5]
 gi|188487598|gb|EDU62701.1| alanine racemase [Escherichia coli 53638]
 gi|190901174|gb|EDV60947.1| alanine racemase [Escherichia coli B7A]
 gi|194423879|gb|EDX39868.1| alanine racemase [Escherichia coli 101-1]
 gi|209914796|dbj|BAG79870.1| alanine racemase [Escherichia coli SE11]
 gi|215267460|emb|CAS11914.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218354493|emb|CAV01345.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           55989]
 gi|218367895|emb|CAR05690.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           S88]
 gi|218372703|emb|CAR20579.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           IAI39]
 gi|222035765|emb|CAP78510.1| alanine racemase, biosynthetic [Escherichia coli LF82]
 gi|226840156|gb|EEH72158.1| alanine racemase 1 [Escherichia sp. 1_1_43]
 gi|226901525|gb|EEH87784.1| alanine racemase 1 [Escherichia sp. 3_2_53FAA]
 gi|238859949|gb|ACR61947.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           BW2952]
 gi|242379581|emb|CAQ34402.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           BL21(DE3)]
 gi|253326363|gb|ACT30965.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975890|gb|ACT41561.1| alanine racemase [Escherichia coli B str. REL606]
 gi|253980046|gb|ACT45716.1| alanine racemase [Escherichia coli BL21(DE3)]
 gi|257767168|dbj|BAI38663.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O111:H- str. 11128]
 gi|260451118|gb|ACX41540.1| alanine racemase [Escherichia coli DH1]
 gi|281603462|gb|ADA76446.1| Alanine racemase, biosynthetic [Shigella flexneri 2002017]
 gi|291320810|gb|EFE60252.1| alanine racemase [Escherichia coli B088]
 gi|299882348|gb|EFI90559.1| alanine racemase [Escherichia coli MS 196-1]
 gi|300315711|gb|EFJ65495.1| alanine racemase [Escherichia coli MS 175-1]
 gi|300401812|gb|EFJ85350.1| alanine racemase [Escherichia coli MS 84-1]
 gi|300415443|gb|EFJ98753.1| alanine racemase [Escherichia coli MS 115-1]
 gi|300419481|gb|EFK02792.1| alanine racemase [Escherichia coli MS 182-1]
 gi|300453724|gb|EFK17344.1| alanine racemase [Escherichia coli MS 116-1]
 gi|300456848|gb|EFK20341.1| alanine racemase [Escherichia coli MS 21-1]
 gi|300462298|gb|EFK25791.1| alanine racemase [Escherichia coli MS 187-1]
 gi|300523926|gb|EFK44995.1| alanine racemase [Escherichia coli MS 119-7]
 gi|300529381|gb|EFK50443.1| alanine racemase [Escherichia coli MS 107-1]
 gi|300841952|gb|EFK69712.1| alanine racemase [Escherichia coli MS 124-1]
 gi|301076663|gb|EFK91469.1| alanine racemase [Escherichia coli MS 146-1]
 gi|305850811|gb|EFM51267.1| alanine racemase [Escherichia coli NC101]
 gi|306907912|gb|EFN38413.1| alanine racemase [Escherichia coli W]
 gi|307629105|gb|ADN73409.1| alanine racemase [Escherichia coli UM146]
 gi|308120520|gb|EFO57782.1| alanine racemase [Escherichia coli MS 145-7]
 gi|309704520|emb|CBJ03869.1| alanine racemase [Escherichia coli ETEC H10407]
 gi|310331687|gb|EFP98943.1| alanine racemase [Escherichia coli 1827-70]
 gi|312289620|gb|EFR17511.1| alanine racemase [Escherichia coli 2362-75]
 gi|312948630|gb|ADR29457.1| alanine racemase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648749|gb|EFS13189.1| alanine racemase [Shigella flexneri 2a str. 2457T]
 gi|315063377|gb|ADT77704.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli W]
 gi|315138607|dbj|BAJ45766.1| alanine racemase [Escherichia coli DH1]
 gi|315254725|gb|EFU34693.1| alanine racemase [Escherichia coli MS 85-1]
 gi|315297524|gb|EFU56803.1| alanine racemase [Escherichia coli MS 16-3]
 gi|315617421|gb|EFU98027.1| alanine racemase [Escherichia coli 3431]
 gi|320193412|gb|EFW68049.1| Alanine racemase, biosynthetic [Escherichia coli WV_060327]
 gi|320200816|gb|EFW75402.1| Alanine racemase, biosynthetic [Escherichia coli EC4100B]
 gi|323171196|gb|EFZ56844.1| alanine racemase [Escherichia coli LT-68]
 gi|323175939|gb|EFZ61531.1| alanine racemase [Escherichia coli 1180]
 gi|323182156|gb|EFZ67566.1| alanine racemase [Escherichia coli 1357]
 gi|323380559|gb|ADX52827.1| alanine racemase [Escherichia coli KO11]
 gi|323935542|gb|EGB31873.1| alanine racemase [Escherichia coli E1520]
 gi|323940236|gb|EGB36429.1| alanine racemase [Escherichia coli E482]
 gi|323946186|gb|EGB42220.1| alanine racemase [Escherichia coli H120]
 gi|323950400|gb|EGB46281.1| alanine racemase [Escherichia coli H252]
 gi|323954482|gb|EGB50266.1| alanine racemase [Escherichia coli H263]
 gi|323960459|gb|EGB56092.1| alanine racemase [Escherichia coli H489]
 gi|323969813|gb|EGB65094.1| alanine racemase [Escherichia coli TA007]
 gi|324007777|gb|EGB76996.1| alanine racemase [Escherichia coli MS 57-2]
 gi|324017104|gb|EGB86323.1| alanine racemase [Escherichia coli MS 117-3]
 gi|324118625|gb|EGC12517.1| alanine racemase [Escherichia coli E1167]
 gi|331035769|gb|EGI08007.1| alanine racemase [Escherichia coli H736]
 gi|331061830|gb|EGI33755.1| alanine racemase [Escherichia coli TA271]
 gi|331071646|gb|EGI42982.1| alanine racemase [Escherichia coli H591]
 gi|331081204|gb|EGI52365.1| alanine racemase [Escherichia coli H299]
 gi|332346052|gb|AEE59386.1| alanine racemase [Escherichia coli UMNK88]
 gi|332751997|gb|EGJ82390.1| alanine racemase [Shigella flexneri 4343-70]
 gi|332752167|gb|EGJ82559.1| alanine racemase [Shigella flexneri K-671]
 gi|332753294|gb|EGJ83675.1| alanine racemase [Shigella flexneri 2747-71]
 gi|332764759|gb|EGJ94988.1| alanine racemase [Shigella flexneri 2930-71]
 gi|332998121|gb|EGK17725.1| alanine racemase [Shigella flexneri VA-6]
 gi|332999051|gb|EGK18640.1| alanine racemase [Shigella flexneri K-272]
 gi|332999100|gb|EGK18687.1| alanine racemase [Shigella flexneri K-218]
 gi|333014184|gb|EGK33540.1| alanine racemase [Shigella flexneri K-304]
 gi|333014415|gb|EGK33766.1| alanine racemase [Shigella flexneri K-227]
          Length = 359

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|193067831|ref|ZP_03048797.1| alanine racemase [Escherichia coli E110019]
 gi|192958806|gb|EDV89243.1| alanine racemase [Escherichia coli E110019]
          Length = 359

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 173/368 (47%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++  +I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPMISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|2506170|sp|P10724|ALR_BACST RecName: Full=Alanine racemase
          Length = 388

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 154/378 (40%), Gaps = 26/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     ++DL A+ +N  ++  L  +     AVVK NAYG G  ++A     AG     V
Sbjct: 5   HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR    +A I VL    P    +     +   +     L   S L S     
Sbjct: 65  AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
            + L++DTG  RLG+  +E          +     L  + +H A AD+ ++   S Q  R
Sbjct: 125 HFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 184

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           F  ++            A+S+  L  P+  F + R GI++YG            +P++  
Sbjct: 185 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VSYG       +  I    IGYADG+   L            
Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  +   L +  G  + + G      I +DDVA    
Sbjct: 296 ---HVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 351 TINYEVPCTISYRVPRIF 368


>gi|110798951|ref|YP_695311.1| alanine racemase [Clostridium perfringens ATCC 13124]
 gi|123148891|sp|Q0TSS9|ALR_CLOP1 RecName: Full=Alanine racemase
 gi|110673598|gb|ABG82585.1| alanine racemase [Clostridium perfringens ATCC 13124]
          Length = 386

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 151/379 (39%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  
Sbjct: 6   RPVWAEIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           + E  +LR     A I +L        + + +  +   +  V      S   +  G    
Sbjct: 66  ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    +E L+      +    ++  + +H + +D+        Q  + 
Sbjct: 126 VHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVIGLFTHFSTSDEKDKTYTYEQFSKL 185

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
                  +  GI       ++S  I+  P  +    R GI  YG         ++  ++ 
Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +  +  +++      VSYG   K  + S IA   IGYADGY   LSG         
Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K  IKG    ++G++ MD  M D+T    +++GD + + G +       +D+A   
Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 355 GTINYEILCMISHRVPRIY 373


>gi|326939811|gb|AEA15707.1| alanine racemase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 391

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 71  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A    T 
Sbjct: 300 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENITVEEIADMLSTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|237728136|ref|ZP_04558617.1| alanine racemase 1 [Citrobacter sp. 30_2]
 gi|226910147|gb|EEH96065.1| alanine racemase 1 [Citrobacter sp. 30_2]
          Length = 359

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/367 (29%), Positives = 171/367 (46%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I    L   + +  QL                ++
Sbjct: 64  LRLRAGGITQPILLLEGFFDASDLPTISAQRLHTAVHNQEQLEALEAA-KLAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       + + Q   I+SH A AD+P       QL+ F +  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLTQCENVRQPVNIVSHFARADEPECGATEKQLDIFNSFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPG+ LYG +      I      Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWARPGLILYGVSPLENHSIGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG  +  RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWQSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPEAQDKAGDSVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|170769516|ref|ZP_02903969.1| alanine racemase [Escherichia albertii TW07627]
 gi|170121573|gb|EDS90504.1| alanine racemase [Escherichia albertii TW07627]
          Length = 359

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 173/368 (47%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +           ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-DLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHFARADEPTCGATEKQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQSQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|294493177|gb|ADE91933.1| alanine racemase [Escherichia coli IHE3034]
          Length = 359

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SPDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|168207630|ref|ZP_02633635.1| alanine racemase [Clostridium perfringens E str. JGS1987]
 gi|168209161|ref|ZP_02634786.1| alanine racemase [Clostridium perfringens B str. ATCC 3626]
 gi|168216261|ref|ZP_02641886.1| alanine racemase [Clostridium perfringens NCTC 8239]
 gi|170661037|gb|EDT13720.1| alanine racemase [Clostridium perfringens E str. JGS1987]
 gi|170712680|gb|EDT24862.1| alanine racemase [Clostridium perfringens B str. ATCC 3626]
 gi|182381967|gb|EDT79446.1| alanine racemase [Clostridium perfringens NCTC 8239]
          Length = 386

 Score =  400 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 151/379 (39%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  
Sbjct: 6   RPVWAEIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           + E  +LR     A I +L        + + +  +   +  V      S   +  G    
Sbjct: 66  ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    +E L+      +    ++  + +H + +D+        Q  + 
Sbjct: 126 IHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVVGLFTHFSTSDEKDKTYTYEQFSKL 185

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
                  +  GI       ++S  I+  P  +    R GI  YG         ++  ++ 
Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +  +  +++      VSYG   K  + S IA   IGYADGY   LSG         
Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K  IKG    ++G++ MD  M D+T    +++GD + + G +       +D+A   
Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 355 GTINYEILCMISHRVPRIY 373


>gi|157372681|ref|YP_001480670.1| alanine racemase [Serratia proteamaculans 568]
 gi|157324445|gb|ABV43542.1| alanine racemase [Serratia proteamaculans 568]
          Length = 359

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 180/366 (49%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +   +  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRQAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++   N+   + S+ QL    +  +     P  ++
Sbjct: 64  LMLRSGGIVKPILMLEGFFCAEDLPVLVANNIETAVHSIEQLEALEQA-TLARPVPVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       + + Q   I+SH + AD+P S     Q++ F +  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSACRNVVQPVNIMSHFSRADEPESDTTLKQIQCFESFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARII 243
           +   G + S+A+S G LL P+ H +  RPGI LYG +         + +Q  +T ++ +I
Sbjct: 183 AGKPG-QRSIAASGGTLLWPDAHNEWVRPGIILYGVSPMEGSQGCQYDLQPAMTLKSNLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG      D+ + V A+GY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGESVGYGGTWVSAGDTRLGVVAMGYGDGYPRSA-----------PTGTPVWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G+++MDM   D+    + +VGD + ++G  + ++ +A  +G + Y+L+ ++  
Sbjct: 291 GREVPIVGRVSMDMMSVDLGPEATDKVGDEVVLWGQALPVERIADCTGISAYELITKLTQ 350

Query: 364 RYAKFY 369
           R +  Y
Sbjct: 351 RVSMEY 356


>gi|1942328|pdb|1SFT|A Chain A, Alanine Racemase
 gi|1942329|pdb|1SFT|B Chain B, Alanine Racemase
 gi|3891941|pdb|1BD0|A Chain A, Alanine Racemase Complexed With Alanine Phosphonate
 gi|3891942|pdb|1BD0|B Chain B, Alanine Racemase Complexed With Alanine Phosphonate
          Length = 388

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 154/378 (40%), Gaps = 26/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     ++DL A+ +N  ++  L  +     AVVK NAYG G  ++A     AG     V
Sbjct: 5   HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR    +A I VL    P    +     +   +     L   S L S     
Sbjct: 65  AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
            + L++DTG  RLG+  +E          +     L  + +H A AD+ ++   S Q  R
Sbjct: 125 HFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 184

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           F  ++            A+S+  L  P+  F + R GI++YG            +P++  
Sbjct: 185 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VSYG       +  I    IGYADG+   L            
Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  +   L +  G  + + G      I +DDVA    
Sbjct: 296 ---HVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 351 TINYEVPCTISYRVPRIF 368


>gi|293417557|ref|ZP_06660179.1| alanine racemase [Escherichia coli B185]
 gi|291430275|gb|EFF03273.1| alanine racemase [Escherichia coli B185]
          Length = 359

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPRCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|237809465|ref|YP_002893905.1| alanine racemase [Tolumonas auensis DSM 9187]
 gi|237501726|gb|ACQ94319.1| alanine racemase [Tolumonas auensis DSM 9187]
          Length = 358

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/367 (31%), Positives = 180/367 (49%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +ID  AL++N   +   +  N +  AVVK NAYG G  ++A  L  A    + V  +EE
Sbjct: 6   AQIDTQALQHNLAVVRSQIPANTKVVAVVKANAYGHGLIQVAKTL--ASADAYAVARLEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + LR       I +L G     +  ++   N+   + SV QL    + M         L
Sbjct: 64  ALILRSSGIVKPIIMLEGFFSADDLPVLAANNIQTAVHSVEQLDALEQ-MQLPNPVTVWL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG+  +EA +F     N + + Q    I+H + AD+  +   + Q+E F  L
Sbjct: 123 KLDTGMHRLGVRPEEAEEFCERLANCRNVVQPFNFITHFSRADELDNLATTKQIELFNQL 182

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242
              Y G E SLASS+GI+   + H    RPGI LYG +  + K    H +Q V+T +  +
Sbjct: 183 TQKYAG-ECSLASSAGIMEWHDAHADWIRPGIMLYGASPFLGKTGYDHGLQPVMTLKTSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R    GE V YG +    +D+ + V AIGY DGYP                G    +
Sbjct: 242 IAVRLVKQGEPVGYGAKWVAQQDTKVGVVAIGYGDGYPRMA-----------PSGVPVRV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G +VP++G+++MDM   D+    + +VGD + ++G  + ++ VA A GT  Y+L+ ++ 
Sbjct: 291 NGRIVPLVGRVSMDMLTVDLGPDATDKVGDDVTLWGEGLPVETVAEAIGTIPYELITKLT 350

Query: 363 TRYAKFY 369
            R    Y
Sbjct: 351 PRVIMEY 357


>gi|224028214|dbj|BAH23434.1| alanine racemase [Pseudomonas taetrolens]
          Length = 357

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 173/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ S+ QL    +         
Sbjct: 60  IEEALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIER-TQLHKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++  +              +++SH A AD+  +   + Q+  F 
Sbjct: 119 VWLKLDSGMHRVGLHPKDYHEAYQRLLASGKVARIVLMSHFARADELDADATAQQIAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
                    E SL +S G+L  P       RPG+ LYG T       ++  +Q V+T ++
Sbjct: 179 AARQGLAA-ECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAERLQPVMTLQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+TD     VG  ++++G  +   +VA  +GT  Y +   
Sbjct: 287 LVAGKRTQLIGRVSMDMLSIDLTDVPEATVGSPVELWGKHVLASEVAAHAGTIPYQIFCN 346

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 347 L-KRVPRDY 354


>gi|169346950|ref|ZP_02865898.1| alanine racemase [Clostridium perfringens C str. JGS1495]
 gi|169297009|gb|EDS79133.1| alanine racemase [Clostridium perfringens C str. JGS1495]
          Length = 386

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 151/379 (39%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  
Sbjct: 6   RPVWAEIDLDIIANNMKEIRTLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           + E  +LR     A I +L        + + +  +   +  V      S   +  G    
Sbjct: 66  ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    +E L+      +    ++  + +H + +D+        Q  + 
Sbjct: 126 IHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVVGLFTHFSTSDEKDKTYTYEQFSKL 185

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
                  +  GI       ++S  I+  P  +    R GI  YG         ++  ++ 
Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +  +  +++      VSYG   K  + S IA   IGYADGY   LSG         
Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K  IKG    ++G++ MD  M D+T    +++GD + + G +       +D+A   
Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 355 GTINYEILCMISHRVPRIY 373


>gi|225572058|ref|ZP_03780922.1| hypothetical protein RUMHYD_00352 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040493|gb|EEG50739.1| hypothetical protein RUMHYD_00352 [Blautia hydrogenotrophica DSM
           10507]
          Length = 384

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 164/385 (42%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M  N   ++ I L A+  N+  M   L    +  AV+K + YG G   IA  + +   V 
Sbjct: 1   MEKNSRTKVSISLDAIAQNFEEMHRKLPKETKMMAVIKADGYGHGALAIAKTVESYEYVW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
            F   + +E  +LR       I VL       + ++    + P +         S +   
Sbjct: 61  GFATATAQEAGQLREAGIHKPILVLGYTFQEDDALLVREEIRPTVFQYSTAKRLSQEAAR 120

Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +    L +DTG  R+G  +Q E++            ++  + +H A AD+      +
Sbjct: 121 QGKTVHIHLALDTGMARIGFPVQKESVREIQKIQKLDFLEIEGLFTHFAKADEADLTYTA 180

Query: 177 VQLERFRTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            QL ++         +G+       A+S+GI+  P  +  L R GI +YG         +
Sbjct: 181 EQLRQYEQFCQWLSQEGVTVPIRHCANSAGIMCVPRAYLDLVRAGIIMYGIYPSDEVERE 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +  +A+I  ++   AG  VSYGG     +++ IA   +GYADGYP +LS    
Sbjct: 241 KLFLRPAMEWKAQIAYVKTVPAGCAVSYGGTYVTEKETKIATIPVGYADGYPRSLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   + G   PILG++ MD  M D+TD   +   D + + G D    + ++
Sbjct: 298 --------KGWILVHGQKAPILGRVCMDQFMVDVTDIPQVRQHDEVTLIGWDHQAFLSVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++A  SG   Y+ +  IG+R  + Y
Sbjct: 350 ELARLSGRFPYEFVCDIGSRVPRVY 374


>gi|332654151|ref|ZP_08419895.1| alanine racemase [Ruminococcaceae bacterium D16]
 gi|332517237|gb|EGJ46842.1| alanine racemase [Ruminococcaceae bacterium D16]
          Length = 372

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/383 (27%), Positives = 167/383 (43%), Gaps = 27/383 (7%)

Query: 1   MHSNEF-LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M + +     +IDL+AL++N+ ++ A L    R   V K NAYG G   +A  L   G  
Sbjct: 1   MDTTKMRTWAEIDLSALEHNYRALRAMLPAGCRFLGVCKANAYGHGAVPVAQKLEQLGAD 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
              V  V+E  +LR       I  L         ++ +  +   +  +      S   ++
Sbjct: 61  MLAVACVDEARELRQAGITLPILCLGNTPVELAPMLLEYQVTQAVGDLATGQALSDAAVA 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            G +    +++DTG +RLG     ++              +   + +H A A D S    
Sbjct: 121 AGKTLTIHVKLDTGMSRLGFLWQGEQTAREIARLCALPGLKAEGMFTHFADA-DSSEEYT 179

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
             QL +F    +  + +          +S  +L  P  H  + RPGI+LYG         
Sbjct: 180 MGQLTKFLDARAALEKLGVTFKICHCGASGAVLNYPCTHIDMVRPGIALYGYYPAPEMEG 239

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++ V+T ++RI  +R+  AG  VSYG    L RDS +AV  IGY DGYP +LS  
Sbjct: 240 LDGPGLRPVMTVKSRIAAVRELPAGTCVSYGRTAVLKRDSKLAVVPIGYGDGYPRSLSNR 299

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                          I G + PI+G++ MDM M D+TD   ++ GD   ++GP++  +  
Sbjct: 300 MVME-----------IHGVLCPIVGRVCMDMCMVDVTDLPDVKPGDIALVYGPELT-EKA 347

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +GT  Y+LL  +  R  + Y
Sbjct: 348 ADLTGTIVYELLCDLNPRVPRIY 370


>gi|18309850|ref|NP_561784.1| alanine racemase [Clostridium perfringens str. 13]
 gi|20531981|sp|Q8XM22|ALR_CLOPE RecName: Full=Alanine racemase
 gi|18144528|dbj|BAB80574.1| alanine racemase [Clostridium perfringens str. 13]
          Length = 386

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 151/379 (39%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  
Sbjct: 6   RPVWAEIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           + E  +LR     A I +L        + + +  +   +  V      S   +  G    
Sbjct: 66  ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    +E L+      +    ++  + +H + +D+        Q  + 
Sbjct: 126 IHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVIGLFTHFSTSDEKDKTYTYEQFSKL 185

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
                  +  GI       ++S  I+  P  +    R GI  YG         ++  ++ 
Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +  +  +++      VSYG   K  + S IA   IGYADGY   LSG         
Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K  IKG    ++G++ MD  M D+T    +++GD + + G +       +D+A   
Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 355 GTINYEILCMISHRVPRIY 373


>gi|296272487|ref|YP_003655118.1| alanine racemase [Arcobacter nitrofigilis DSM 7299]
 gi|296096661|gb|ADG92611.1| alanine racemase [Arcobacter nitrofigilis DSM 7299]
          Length = 399

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/384 (26%), Positives = 181/384 (47%), Gaps = 27/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  +  +  +I+L  L +N      ++  +++  AV+K + YG G   IA  L   G   
Sbjct: 1   MDLSRAVWTEINLDNLAHNMRETRRITNIDSKITAVIKADGYGHGAVAIAKTLLENGADR 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118
           F V ++ E + LR       I VL        K I + N+I  I ++ Q   +S++  S 
Sbjct: 61  FAVATLSEALLLRNSFSDVEILVLGYTPEHLAKDIIENNIIQTIYTLKQAKEFSRVAISL 120

Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
             +    +++DTG +RLG+   +E ++   +    +   +  I +H A AD+        
Sbjct: 121 NKNLVVHIKLDTGMHRLGMPFSEETIETILDISKHEGLFIEGIFTHFAIADNIDKKYTKQ 180

Query: 178 QLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-- 230
           Q+E+F  +++    KG+      +++S+ I+  P ++F + R GI LYG     + +H  
Sbjct: 181 QVEKFTFIVNSLEEKGLNIPIKHVSNSAAIIDLPEFNFDMVRAGIMLYGLYPSKDVNHNL 240

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+  +A I  +++  A   VSYG   K  + S +A   IGYADGY   LSG    
Sbjct: 241 INLKEVMCLKANISQVKELEANCGVSYGLTYKCEKKSKVATLPIGYADGYTRMLSG---- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                    K  +    VP++G I MD  + D+T  L + +GD + +FG +    I +DD
Sbjct: 297 -------KAKVLVNNTKVPVIGSICMDQCIIDVTG-LDVNMGDEVILFGGNNPNAIAIDD 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           ++    T NY+++  I  R  + Y
Sbjct: 349 ISNLLNTINYEIVCMIDKRVPRVY 372


>gi|114567397|ref|YP_754551.1| alanine racemase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338332|gb|ABI69180.1| alanine racemase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 377

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 95/383 (24%), Positives = 165/383 (43%), Gaps = 24/383 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +      +IDLTA+K+N   +      A   A+VK +AYG G  +++ A    GV+  
Sbjct: 1   MDNRRPTWAEIDLTAIKHNILMIRNKVSPAIIMAIVKADAYGHGMLEVSRACLQEGVEWL 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119
            V S++E + LR    ++ + VL  I     +   + ++   + S+      S+  S   
Sbjct: 61  GVASLDEAIHLREAGIKSPVLVLGFIPEEFAEATVEYDISASVFSLSFARALSQAASRLS 120

Query: 120 VSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            +    +++D+G  RLG +    +L            ++  I +H A AD         Q
Sbjct: 121 RTARVHIKIDSGMGRLGFAPIPSSLALVQEIAALPGIEVEGIFTHFADADAEDKSFTYEQ 180

Query: 179 LERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230
           L  F   +S  +  G+       ++S+ IL  P     + R GI LYG     +      
Sbjct: 181 LRIFSNFVSDLEKGGLSIPLKHCSNSAAILDIPEARLNMVRAGIVLYGLYPSEDMKRLGL 240

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +   +T ++RI  ++    G  +SYG      + + +A   IGYADGY   LS   +  
Sbjct: 241 DIIPAMTLKSRISFLKVLEPGHYISYGRTFCCQQATRVATVPIGYADGYHRLLSNRST-- 298

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDDVA 347
                      I+G  VP +G + MD  MFD++    ++ GD + +FG     +  DD+A
Sbjct: 299 ---------AVIRGEKVPSIGMVCMDQCMFDVSGLERVKEGDEVILFGKPSDGVTADDLA 349

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
              GT NY+++  +  R  + + 
Sbjct: 350 RILGTINYEIVCAVSARVPRLHV 372


>gi|325499632|gb|EGC97491.1| alanine racemase [Escherichia fergusonii ECD227]
          Length = 359

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VLINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLIETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I   +L   + +  QL    +           ++
Sbjct: 64  LRLRAGGITQPILLLEGFFEADDLPTISAEHLQTAVHNEEQLVAL-ETAELKEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       K + Q   I+SH A AD+P S     QL+ F T  
Sbjct: 123 LDTGMHRLGVLPEQAEAFYQRLSQCKNVRQPVNIVSHFARADEPQSGATEKQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEDGTTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAAMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|331675585|ref|ZP_08376332.1| alanine racemase [Escherichia coli TA280]
 gi|331067193|gb|EGI38601.1| alanine racemase [Escherichia coli TA280]
          Length = 359

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     + + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCQNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|229043862|ref|ZP_04191559.1| Alanine racemase [Bacillus cereus AH676]
 gi|228725487|gb|EEL76747.1| Alanine racemase [Bacillus cereus AH676]
          Length = 408

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLDAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|26250840|ref|NP_756880.1| alanine racemase [Escherichia coli CFT073]
 gi|110644389|ref|YP_672119.1| alanine racemase [Escherichia coli 536]
 gi|191171958|ref|ZP_03033503.1| alanine racemase [Escherichia coli F11]
 gi|227886936|ref|ZP_04004741.1| alanine racemase [Escherichia coli 83972]
 gi|300980476|ref|ZP_07175023.1| alanine racemase [Escherichia coli MS 200-1]
 gi|300992970|ref|ZP_07180125.1| alanine racemase [Escherichia coli MS 45-1]
 gi|301047007|ref|ZP_07194116.1| alanine racemase [Escherichia coli MS 185-1]
 gi|33301027|sp|Q8FB20|ALR1_ECOL6 RecName: Full=Alanine racemase, biosynthetic
 gi|26111271|gb|AAN83454.1|AE016770_254 Alanine racemase, biosynthetic [Escherichia coli CFT073]
 gi|110345981|gb|ABG72218.1| alanine racemase, biosynthetic [Escherichia coli 536]
 gi|190907723|gb|EDV67317.1| alanine racemase [Escherichia coli F11]
 gi|227836077|gb|EEJ46543.1| alanine racemase [Escherichia coli 83972]
 gi|300301052|gb|EFJ57437.1| alanine racemase [Escherichia coli MS 185-1]
 gi|300307778|gb|EFJ62298.1| alanine racemase [Escherichia coli MS 200-1]
 gi|300406744|gb|EFJ90282.1| alanine racemase [Escherichia coli MS 45-1]
 gi|307556202|gb|ADN48977.1| alanine racemase [Escherichia coli ABU 83972]
 gi|315291550|gb|EFU50910.1| alanine racemase [Escherichia coli MS 153-1]
 gi|324014852|gb|EGB84071.1| alanine racemase [Escherichia coli MS 60-1]
          Length = 359

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VLINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLIETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I   +L   + +  QL                ++
Sbjct: 64  LRLRAGGITRPILLLEGFFEADDLPTISAEHLHTAVHNEEQLVALENA-ELKEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       K + Q   I+SH A AD+P S     QL+ F T  
Sbjct: 123 LDTGMHRLGVLPEQAEAFYQRLSQCKNVRQPVNIVSHFARADEPQSGATEKQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEDGTTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|228939234|ref|ZP_04101827.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228972113|ref|ZP_04132729.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228978725|ref|ZP_04139096.1| Alanine racemase [Bacillus thuringiensis Bt407]
 gi|228780986|gb|EEM29193.1| Alanine racemase [Bacillus thuringiensis Bt407]
 gi|228787597|gb|EEM35560.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228820429|gb|EEM66461.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 408

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A    T 
Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENITVEEIADMLSTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|117617805|ref|YP_855561.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559212|gb|ABK36160.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 357

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 171/367 (46%), Gaps = 20/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I+  AL++N   +   +   +  AVVK NAYG G   +A  L +     + V  +EE 
Sbjct: 6   AQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVD--ADAYAVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     +  ++   NL   + +  QL    +           L+
Sbjct: 64  LMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQA-DLPAPVVAWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+   E   F       K + Q   I++H + +D+        Q++ F  L 
Sbjct: 123 LDTGMHRLGVRADEMPAFIERLAKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSQLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARII 243
           +   G E ++A+S+GIL  P+ H    RPG+ LYG +   N     + +Q V+T + ++I
Sbjct: 183 APLLG-ERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YG      RD+ + V AIGY DGYP                G    + 
Sbjct: 242 AVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPN-----------GTPVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G +VP++G+++MDMT  D+    + + GD   ++G  + ++ VA   GT  Y+L+ ++ +
Sbjct: 291 GRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTS 350

Query: 364 RYAKFYT 370
           R    Y 
Sbjct: 351 RVFMEYV 357


>gi|218897074|ref|YP_002445485.1| alanine racemase [Bacillus cereus G9842]
 gi|218544621|gb|ACK97015.1| alanine racemase [Bacillus cereus G9842]
          Length = 391

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 167/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N +       + +    A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEIDLNAVKHNVNEFKKHVNDEKIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 71  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  + +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTARELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTIVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GYALINGIRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|182624961|ref|ZP_02952739.1| alanine racemase [Clostridium perfringens D str. JGS1721]
 gi|177909758|gb|EDT72176.1| alanine racemase [Clostridium perfringens D str. JGS1721]
          Length = 386

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 91/379 (24%), Positives = 151/379 (39%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I+L  + NN   +  L G     AVVK NAYG G   IA  L   G     V  
Sbjct: 6   RPVWAEINLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           + E  +LR     A I +L        + + +  +   +  V      S   +  G    
Sbjct: 66  ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    +E L+      +    ++  + +H + +D+        Q  + 
Sbjct: 126 IHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVVGLFTHFSTSDEKDKTYTYEQFSKL 185

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
                  +  GI       ++S  I+  P  +    R GI  YG         ++  ++ 
Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +  +  +++      VSYG   K  + S IA   IGYADGY   LSG         
Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K  IKG    ++G++ MD  M D+T    +++GD + + G +       +D+A   
Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 355 GTINYEILCMISHRVPRIY 373


>gi|82546378|ref|YP_410325.1| alanine racemase [Shigella boydii Sb227]
 gi|187732519|ref|YP_001882723.1| alanine racemase [Shigella boydii CDC 3083-94]
 gi|20137402|sp|Q932V0|ALR1_SHIDY RecName: Full=Alanine racemase, biosynthetic
 gi|123558063|sp|Q31TW1|ALR_SHIBS RecName: Full=Alanine racemase
 gi|226711059|sp|B2TX62|ALR_SHIB3 RecName: Full=Alanine racemase
 gi|16610215|dbj|BAB71770.1| alanine racemase [Shigella dysenteriae]
 gi|16610219|dbj|BAB71772.1| alanine racemase [Shigella flexneri]
 gi|81247789|gb|ABB68497.1| alanine racemase 1 [Shigella boydii Sb227]
 gi|187429511|gb|ACD08785.1| alanine racemase [Shigella boydii CDC 3083-94]
 gi|320174482|gb|EFW49622.1| Alanine racemase, biosynthetic [Shigella dysenteriae CDC 74-1112]
 gi|320185265|gb|EFW60041.1| Alanine racemase, biosynthetic [Shigella flexneri CDC 796-83]
 gi|332087804|gb|EGI92930.1| alanine racemase [Shigella boydii 3594-74]
          Length = 359

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|157157084|ref|YP_001465553.1| alanine racemase [Escherichia coli E24377A]
 gi|157079114|gb|ABV18822.1| alanine racemase [Escherichia coli E24377A]
          Length = 359

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKSG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|298489912|ref|YP_003720089.1| alanine racemase ['Nostoc azollae' 0708]
 gi|298231830|gb|ADI62966.1| alanine racemase ['Nostoc azollae' 0708]
          Length = 395

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 173/381 (45%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++   ++IDL AL  N   +   LS   +  AVVK +AYG G   +A  +  AG     V
Sbjct: 23  SQRAWVEIDLGALSYNVKQLVIFLSSRTQLMAVVKADAYGHGSVTVAKTVLEAGASCLGV 82

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118
            +V EG++LR    +A I +L   H   Q   I    L P + S  Q    S  +     
Sbjct: 83  ATVPEGIQLREGGIKAPILILGATHTLEQIHAIAQWKLQPTLCSPKQALEVSNTLEAINY 142

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               P  +++DTG +RLG + QEA DF           ++ + SHLA AD P   +   Q
Sbjct: 143 NSPIPVHIKLDTGMSRLGTNWQEAGDFVQLVQGLPHLDIASVYSHLATADSPDPAIMQQQ 202

Query: 179 LERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231
             RF   I+  K  GI+     LA+S+  L  P  H+ + R G+++YG      +     
Sbjct: 203 HNRFEQAIAQIKARGIKIPSLHLANSAATLADPKLHYDMVRAGLAIYGLYPATHLENKIK 262

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +Q V+  +AR+  ++   AG  VSYG Q    R+  IAV  IGYADG P +LS       
Sbjct: 263 LQPVLQLKARVTHVKTIAAGTGVSYGHQFIAPREMRIAVVGIGYADGVPRSLSNQM---- 318

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
                  +  ++G  V  +G ITMD  M D++    ++ G+ + + G      I  DD A
Sbjct: 319 -------QVLLRGQRVHQIGTITMDQIMLDVSSIPDLQEGEIVTLLGEQGQEQISADDWA 371

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
               T ++++L     R  + 
Sbjct: 372 NQLNTISWEILCAFKHRLPRV 392


>gi|323975315|gb|EGB70418.1| alanine racemase [Escherichia coli TW10509]
          Length = 359

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 173/368 (47%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     R++ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERNTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|331665722|ref|ZP_08366616.1| alanine racemase [Escherichia coli TA143]
 gi|331056773|gb|EGI28767.1| alanine racemase [Escherichia coli TA143]
          Length = 359

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCDATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKLG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|15964880|ref|NP_385233.1| putative alanine racemase protein [Sinorhizobium meliloti 1021]
 gi|307300951|ref|ZP_07580720.1| alanine racemase [Sinorhizobium meliloti BL225C]
 gi|307321854|ref|ZP_07601240.1| alanine racemase [Sinorhizobium meliloti AK83]
 gi|20137219|sp|Q92R07|ALR_RHIME RecName: Full=Alanine racemase
 gi|15074059|emb|CAC45706.1| Putative alanine racemase [Sinorhizobium meliloti 1021]
 gi|306892523|gb|EFN23323.1| alanine racemase [Sinorhizobium meliloti AK83]
 gi|306903906|gb|EFN34492.1| alanine racemase [Sinorhizobium meliloti BL225C]
          Length = 379

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 181/376 (48%), Positives = 242/376 (64%), Gaps = 6/376 (1%)

Query: 1   MHSNEFL----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M S EFL    RL +DLTAL +NW +MN  SG AR AAV+K +AYGLG    APALY AG
Sbjct: 1   MQSPEFLSASSRLTVDLTALADNWRAMNERSGKARAAAVLKADAYGLGVVHAAPALYAAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            +DFFV SVEEG  LR   P  RI++L G+ PG E++ F+ +L+P+I+S  QL  +   +
Sbjct: 61  ARDFFVASVEEGADLRPLVPDGRIYILAGMWPGNEELFFENDLVPIINSEEQLAVFMAAL 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           S    HP  L VDTG NRLGLS +EAL   H+          L++SHLACADDP   +N 
Sbjct: 121 SERGDHPCVLHVDTGMNRLGLSPEEALALAHDPARPASFSPVLVMSHLACADDPGHPMNR 180

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
            QL+RFR + + ++G+ ASLA+S G+ LG +YHF LTRPGI++YGG       +PM+ VV
Sbjct: 181 YQLQRFREVTAAFEGVPASLANSGGVFLGADYHFDLTRPGIAVYGGEAVNGAVNPMKAVV 240

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           TAEARI+ +R   +G   SYG   +  RDS IA  AIGYADGY  ++SG       ++  
Sbjct: 241 TAEARIVQVRTVPSGGTASYGASVRFGRDSRIATVAIGYADGYHRSVSGGGVTLRQAMPS 300

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN 354
           G  GF+ G  VP +G++TMD+++FD+TD     +  GDYI++FG ++ +DDVA A GT  
Sbjct: 301 GAFGFLHGMKVPHVGRVTMDLSLFDVTDLPEAAVRAGDYIEVFGRNVVIDDVARAGGTIG 360

Query: 355 YDLLVRIGTRYAKFYT 370
           Y+LL  +G RY + Y 
Sbjct: 361 YELLTSLGRRYHRTYV 376


>gi|315287851|gb|EFU47253.1| alanine racemase [Escherichia coli MS 110-3]
          Length = 359

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINHRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|323965715|gb|EGB61167.1| alanine racemase [Escherichia coli M863]
 gi|327250397|gb|EGE62110.1| alanine racemase [Escherichia coli STEC_7v]
          Length = 359

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 173/368 (47%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTRCKNVRQPVNIVSHFARADEPKCGATEKQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     R++ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERNTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|73763193|gb|AAZ83976.1| alanine racemase [Pseudomonas putida]
          Length = 357

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 173/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ S+ QL    +         
Sbjct: 60  IEEALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIER-TQLHKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++  +              +++SH A AD+  +   + Q+  F 
Sbjct: 119 VWLKLDSGMHRVGLHPKDYHEAYQRLLASGKVARIVLMSHFARADELDADATAQQIAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
                    E SL +S G+L  P       RPG+ LYG T       ++  +Q V+T ++
Sbjct: 179 AARQGLAA-ECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAERLQPVMTLQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+TD     VG  ++++G  +   +VA  +GT  Y +   
Sbjct: 287 LVAGKRTQLIGRVSMDMLSIDLTDVPEATVGSPVELWGKHVLAREVAAHAGTIPYQIFCN 346

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 347 L-KRVPRDY 354


>gi|218234797|ref|YP_002366787.1| alanine racemase [Bacillus cereus B4264]
 gi|296502685|ref|YP_003664385.1| alanine racemase [Bacillus thuringiensis BMB171]
 gi|218162754|gb|ACK62746.1| alanine racemase [Bacillus cereus B4264]
 gi|296323737|gb|ADH06665.1| alanine racemase [Bacillus thuringiensis BMB171]
          Length = 391

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 71  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|206972055|ref|ZP_03233003.1| alanine racemase [Bacillus cereus AH1134]
 gi|206732978|gb|EDZ50152.1| alanine racemase [Bacillus cereus AH1134]
          Length = 391

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 71  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|228907821|ref|ZP_04071674.1| Alanine racemase [Bacillus thuringiensis IBL 200]
 gi|228851823|gb|EEM96624.1| Alanine racemase [Bacillus thuringiensis IBL 200]
          Length = 408

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNAFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGDEKIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|75763091|ref|ZP_00742872.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228900692|ref|ZP_04064911.1| Alanine racemase [Bacillus thuringiensis IBL 4222]
 gi|74489425|gb|EAO52860.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228858950|gb|EEN03391.1| Alanine racemase [Bacillus thuringiensis IBL 4222]
          Length = 408

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 167/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N +       + +    A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVNEFKKHVNDEKIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  + +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTARELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTIVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GYALINGIRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|168212492|ref|ZP_02638117.1| alanine racemase [Clostridium perfringens CPE str. F4969]
 gi|170716170|gb|EDT28352.1| alanine racemase [Clostridium perfringens CPE str. F4969]
          Length = 386

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 151/379 (39%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL  + NN   +  L G     AVVK NAYG G   IA  L   G     V  
Sbjct: 6   RPVWAEIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           + E  +LR     A I +L        + + +  +   +  V      S   +  G    
Sbjct: 66  ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    +E L+      +    ++  + +H + +D+        Q  + 
Sbjct: 126 IHIAIDTGMGRIGFLPNKEGLNKVLEICSLPGVEVIGLFTHFSTSDEKDKTYTYEQFSKL 185

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
                  +  GI       ++S  I+  P  +    R GI  YG         ++  ++ 
Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +  +  +++      VSYG   K  + S IA   IGYADGY   LSG         
Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K  IKG    ++G++ MD  M D+T    +++GD + + G +       +D+A   
Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++L  I  R  + Y
Sbjct: 355 GTINYEILCMISHRVPRIY 373


>gi|297528581|ref|YP_003669856.1| alanine racemase [Geobacillus sp. C56-T3]
 gi|297251833|gb|ADI25279.1| alanine racemase [Geobacillus sp. C56-T3]
          Length = 384

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 157/378 (41%), Gaps = 26/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++IDL A+ +N  ++   L    +  AVVK NAYG G  ++A     AG     V
Sbjct: 5   HRDTWVEIDLDAIYDNVANLRRFLPEGTQIMAVVKANAYGHGDAQVAATALEAGASRLAV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR     A I VL    P    +  +  +   +     L   S L +     
Sbjct: 65  AFLDEALALRKKGIDAPILVLGASRPEDVALAAEHRIALTVFRSDWLEKASSLYNGSTPI 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
            + L++DTG  RLG+  +E         ++     L  + +H A AD+ ++   S Q  R
Sbjct: 125 HFHLKMDTGMGRLGVKDEEETKRIAALIDRHPPFVLEGVYTHFATADEVNTDYFSYQYAR 184

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           F  ++            A+S+  L   +  F + R GIS+YG     +      + ++  
Sbjct: 185 FLHMLDWLPSRPPLVHCANSAAALRFSDRAFNMVRFGISMYGLAPSPDIKPLLPYELKEA 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VSYG       +  I    IGYADG+   L            
Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  + + L +  G  + + G      I +DDVA   G
Sbjct: 296 ---HVLVGGQRAPIVGRICMDQCMIRLPEPLPV--GTKVTLIGRQGDEVISIDDVARHLG 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 351 TINYEVPCTISYRVPRIF 368


>gi|90581360|ref|ZP_01237156.1| alanine racemase [Vibrio angustum S14]
 gi|90437470|gb|EAS62665.1| alanine racemase [Vibrio angustum S14]
          Length = 359

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 179/369 (48%), Gaps = 22/369 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL +N   +   + N++  AVVK NAYG G  ++A  L N  V  + V  +EE 
Sbjct: 6   AHIDTEALAHNLGLIRQHAPNSKVLAVVKANAYGHGLLRVAQTLSN--VDAYGVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G + P    ++   N+  V+ S+ QL    +           ++
Sbjct: 64  LILRAGGIVKPILLLEGFYAPSDLPVLVTNNIHTVVHSIEQLEALEQ-TELDNPVQVWVK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++  DF       + + +    ISH   ADD SS +   QL+ F  L 
Sbjct: 123 IDTGMHRLGVRPEDLTDFMARLNACENVAKPLRFISHFGNADDLSSDITLKQLDTFLDLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVVTAEAR 241
             Y+G E SLA+S+GIL  P+   +  RPGI +YG +      +   ++ ++ V+T  + 
Sbjct: 183 QDYQG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFNESERFASAYDLKPVMTLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    GE V YGG     RD+ + V AIGY DGYP T              G    
Sbjct: 242 LIAVRDVKKGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VP+ G+++MDM   D+      +VGD   ++G  +  + VA   GT  Y+L+ ++
Sbjct: 291 VNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDTATLWGEGLPSEIVAEHIGTIAYELVTKL 350

Query: 362 GTRYAKFYT 370
             R A  YT
Sbjct: 351 TPRVAMAYT 359


>gi|228965092|ref|ZP_04126189.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228794636|gb|EEM42145.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 408

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 167/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N +       + +    A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVNEFKKHVNDEKIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  + +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTARELGIQIPYIHSSNSAGSIELSNTFQNMVRVGIGVYGMYPSKEVDHTIVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GYALINGIRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|301021579|ref|ZP_07185579.1| alanine racemase [Escherichia coli MS 69-1]
 gi|300397977|gb|EFJ81515.1| alanine racemase [Escherichia coli MS 69-1]
          Length = 359

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWGSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|295095419|emb|CBK84509.1| alanine racemase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 359

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 170/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I D +L   + +  QL    +           ++
Sbjct: 64  LRLRAGGITQPILLLEGFFEASDLPTIADQHLHTAVHNEEQLAAL-ETAELSEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A  F       K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPESAEAFYQRLSQCKNVRQPVNIVSHFARADEPECGATEQQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G   S+A+S GILL P  HF   RPGI LYG +   NK        + V++  +++
Sbjct: 183 EGKPG-MRSIAASGGILLWPQSHFDWARPGIILYGVSPLENKPWGPDFGFKPVMSLVSKL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG      D+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWTSEHDTRLGVVAMGYGDGYPRAA-----------PTGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  V I+G++ MDM   D+      + GD   ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVKIVGRVAMDMICVDLGPDAQDKAGDDAVMWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|163940135|ref|YP_001645019.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
 gi|163862332|gb|ABY43391.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
          Length = 398

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 162/375 (43%), Gaps = 25/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL AL+ N+               VVK NAYG G   IA A+  AG     V  V+E
Sbjct: 11  IEVDLNALQRNFQQYKQAIPFGTAIMTVVKANAYGHGAVPIAKAVIEAGTSHLAVAFVDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           G++LR       I +               +L   + ++  L    ++ S    +    +
Sbjct: 71  GIELREAGITVPILIFGYTPYEAIVDAITYDLSMTVYTIEDLHAIEEVASQMEKNAYIHI 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG +R+GL L E   F       K  Q+  + +H ACAD+       +Q E F+  +
Sbjct: 131 KIDTGMSRIGLQLNEVTLFLQTLKCTKYIQVEGMYTHFACADERDKAYTLMQQEVFQKAV 190

Query: 187 SHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           S  + ++         +S+  +        + R GI+LYG     +   ++  +Q ++T 
Sbjct: 191 SKAEELQIVIPWIHANNSAATIDMRETKGNMVRLGIALYGLYPSADVNQEAISLQPILTF 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++++  I+K   G  VSYG     T +  IA   +GYADG    LS             G
Sbjct: 251 KSKVAHIKKVKKGNGVSYGATYTATGEEWIATIPVGYADGVSRQLSN-----------KG 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
              IK   VPI+G+I MD  M D+T  + I VGD +  +G      I +D VA    T N
Sbjct: 300 FVLIKDVKVPIIGRICMDQLMLDVTKIMPIHVGDEVVFYGNQGEESISVDCVADTLSTIN 359

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   +  R  + Y
Sbjct: 360 YEITCMLSRRIPRIY 374


>gi|89075968|ref|ZP_01162340.1| alanine racemase [Photobacterium sp. SKA34]
 gi|89048317|gb|EAR53896.1| alanine racemase [Photobacterium sp. SKA34]
          Length = 359

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 180/369 (48%), Gaps = 22/369 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL +N   +   + N++  AVVK NAYG G  ++A  L N  V  + V  +EE 
Sbjct: 6   AHIDTEALAHNLGLIRQHAPNSKVLAVVKANAYGHGLLRVAQTLSN--VDAYGVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G + P    ++   N+  V+ S+ QL    +           ++
Sbjct: 64  LILRAGGIVKPILLLEGFYAPSDLPVLVTNNIHTVVHSIEQLEALEQ-TELDNPVQVWVK 122

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++  DF    +  + + +    ISH   ADD SS +   QL+ F  L 
Sbjct: 123 IDTGMHRLGVRPEDLTDFMVRLNACENVAKPLRFISHFGNADDLSSDITLKQLDTFLDLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVVTAEAR 241
             Y+G E SLA+S+GIL  P+   +  RPGI +YG +      +   S+ ++ V+T  + 
Sbjct: 183 QDYQG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFNESVRFAASYDLKPVMTLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    GE V YGG     RD+ + V AIGY DGYP T              G    
Sbjct: 242 LIAVRDVKQGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VP+ G+++MDM   D+      +VGD   ++G  +  + VA   GT  Y+L+ ++
Sbjct: 291 VNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDTATLWGEGLPAEVVAEHIGTIAYELVTKL 350

Query: 362 GTRYAKFYT 370
             R A  YT
Sbjct: 351 TPRVAMAYT 359


>gi|56418766|ref|YP_146084.1| alanine racemase [Geobacillus kaustophilus HTA426]
 gi|81819823|sp|Q5L3G4|ALR_GEOKA RecName: Full=Alanine racemase
 gi|56378608|dbj|BAD74516.1| alanine racemase [Geobacillus kaustophilus HTA426]
          Length = 384

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 158/378 (41%), Gaps = 26/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++IDL A+ +N  ++   L    +  AVVK NAYG G  ++A     AG     V
Sbjct: 5   HRDTWVEIDLDAIYDNVANLRRFLPEGTQIMAVVKANAYGHGDAQVAATALEAGASRLAV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR     A I VL    P    +  +  +   +     L   S L +     
Sbjct: 65  AFLDEALALRKKGIDAPILVLGASRPEDVALAAEHRIALTVFRSDWLEKASSLYNGSTPI 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
            + L++DTG  RLG+  +E         ++     L  + +H A AD+ ++   S Q  R
Sbjct: 125 HFHLKMDTGMGRLGVKDEEETKRIAALIDRHPPFVLEGVYTHFATADEVNTDYFSYQYAR 184

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           F  ++            A+S+  L   +  F + R GIS+YG     +      + ++  
Sbjct: 185 FLHMLDWLPSRPPLVHCANSAAALRFSDRAFNMVRFGISMYGLAPSPDIKPLLPYELKEA 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VSYG       +  I    IGYADG+   L            
Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  + + L +  G  + + G      I +DDVA   G
Sbjct: 296 ---HVLVGGQRAPIVGRICMDQCMIRLPEPLPV--GTKVTLIGRQGDEVISIDDVARHLG 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   IG R  + +
Sbjct: 351 TINYEVPCTIGYRVPRIF 368


>gi|218551364|ref|YP_002385156.1| alanine racemase [Escherichia fergusonii ATCC 35469]
 gi|218358906|emb|CAQ91565.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia
           fergusonii ATCC 35469]
 gi|324112309|gb|EGC06287.1| alanine racemase [Escherichia fergusonii B253]
          Length = 359

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VLINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLIETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I   +L   + +  QL    +           ++
Sbjct: 64  LRLRAGGITQPILLLEGFFEADDLPTISAEHLQTAVHNEEQLVAL-ETAELKEPVIVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       K + Q   I+SH A AD+P S     QL+ F T  
Sbjct: 123 LDTGMHRLGVLPEQAEAFYQRLSQCKNVRQPVNIVSHFARADEPQSGATEKQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEDGTTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAAMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|330004917|ref|ZP_08305062.1| alanine racemase [Klebsiella sp. MS 92-3]
 gi|328536477|gb|EGF62821.1| alanine racemase [Klebsiella sp. MS 92-3]
          Length = 359

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 174/367 (47%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G    ++  +I    L   + S  QL    +           ++
Sbjct: 64  LRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQA-DLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +        K    Q V+T  + +
Sbjct: 183 EGKPGL-RSIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGKDFGCQPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|148265867|ref|YP_001232573.1| alanine racemase [Geobacter uraniireducens Rf4]
 gi|146399367|gb|ABQ28000.1| alanine racemase [Geobacter uraniireducens Rf4]
          Length = 384

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 166/378 (43%), Gaps = 28/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +IDL AL++N++ +       +   AVVK +AYG G   I+  L   GV  F V  + E
Sbjct: 16  AEIDLAALRHNYYQVKKAVPAGSGLLAVVKADAYGHGFMDISRELEALGVTAFGVAFLAE 75

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           G++LR       I +L GI+PGQEK     N+   + S+ Q                  L
Sbjct: 76  GIQLRKSGIDRPILLLGGIYPGQEKKCVGFNISTAVFSLDQARVLDDVARKLYRKAKIHL 135

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFR 183
           +VDTG  RLG+  +EA  F       K  +L  I SH A AD+         + Q E F 
Sbjct: 136 KVDTGMGRLGIRYEEAPAFFRELKKLKNLELEGIFSHFASADELDDEGSGYTARQTEIFA 195

Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVV 236
            ++       +      +A+S+           L RPGI LYG     +      ++ V+
Sbjct: 196 AVLQEGTRQGFSPTFVHIANSAAAFSRDFPFCNLARPGIVLYGALPSADFQGKIDVKPVM 255

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             ++R+ +++    G  +SY  +    + +L+A   +GYADGY   L+            
Sbjct: 256 RLKSRVAMLKWVEPGTSISYARRYVAGKKTLVASVPVGYADGYCRALTN----------- 304

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
            G+  ++G    + G + MD  M D+TD   + VGD + + G D     I  +++A  SG
Sbjct: 305 KGEALVRGQRARVAGTVCMDWIMLDVTDIAGVAVGDEVTLLGCDNQGNCIHAEELAAWSG 364

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++   I  R  + Y
Sbjct: 365 TIAYEIFCGISKRVPRVY 382


>gi|146291864|ref|YP_001182288.1| alanine racemase [Shewanella putrefaciens CN-32]
 gi|254802380|sp|A4Y3F6|ALR_SHEPC RecName: Full=Alanine racemase
 gi|145563554|gb|ABP74489.1| alanine racemase [Shewanella putrefaciens CN-32]
 gi|319425098|gb|ADV53172.1| alanine racemase [Shewanella putrefaciens 200]
          Length = 358

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 178/367 (48%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I  +AL+NN   +   +  ++  AVVK N YG G   +A  L N     F +  
Sbjct: 3   PFPRAEISSSALQNNLAVLRQQASASQVMAVVKANGYGHGLLNVANCLVN--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +AR+ +L G     +  ++   ++  V+    Q+    ++        
Sbjct: 61  LEEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQV-KLTKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G +RLG++ ++             + +   +++H ACAD+P +H   VQ+  F
Sbjct: 120 VWLKVDSGMHRLGVTPEQFATVYARLMACPNIAKPIHLMTHFACADEPDNHYTDVQMAAF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239
             L +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +   
Sbjct: 180 NELTAGLPGF-RTLANSAGALYWPKSQGDWIRPGIALYGVSPVAGDCGTNHGLIPAMNLV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+I +R   A + V YG      +D+ + V AIGY DGYP            +   G  
Sbjct: 239 SRLIAVRDHKANQPVGYGCYWTAKQDTRLGVVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G  VPI+G+++MDM   D+    + +VGD + ++G D+ +++VA   GT  Y+L+ 
Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGQDATDKVGDDVLLWGQDLPVEEVAERIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|256019701|ref|ZP_05433566.1| alanine racemase [Shigella sp. D9]
 gi|332280832|ref|ZP_08393245.1| alanine racemase 1 [Shigella sp. D9]
 gi|332103184|gb|EGJ06530.1| alanine racemase 1 [Shigella sp. D9]
          Length = 359

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG      D+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSECDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|153938703|ref|YP_001390994.1| alanine racemase [Clostridium botulinum F str. Langeland]
 gi|152934599|gb|ABS40097.1| alanine racemase [Clostridium botulinum F str. Langeland]
 gi|295319053|gb|ADF99430.1| alanine racemase [Clostridium botulinum F str. 230613]
          Length = 389

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/384 (26%), Positives = 163/384 (42%), Gaps = 27/384 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            ++  +  +++L  L  N  ++          AVVK N YG G   IA  L   G     
Sbjct: 3   RNHRPVWEEVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLS 62

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V  + E  +LR       I +L    P   + I D N+ PV+ S       SK  S    
Sbjct: 63  VACLSEATELREGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDYANQLSKAASLKNR 122

Query: 122 H-PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG     E+L+      +    ++  + SH + +D+     +  Q 
Sbjct: 123 IVKTHIAVDTGMGRLGFDPTVESLEEIKRIQDLSNIKIEGLCSHFSSSDENDKSYSEYQF 182

Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231
           + F+       GI        +++S+ I+  P+ +    R GI LYG    +    ++  
Sbjct: 183 KIFQNFRKKLIGINMKIPIYHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVNKENLH 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T +A I+ I+   +G+ V Y  + K  R S IA+  +GY DGY   LS       
Sbjct: 243 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345
                 GK  I G   PI+G I MD  M D+TD   ++VGD + I G D         +D
Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAED 351

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   G T+ +++  I  R  + Y
Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375


>gi|30020200|ref|NP_831831.1| alanine racemase [Bacillus cereus ATCC 14579]
 gi|228962874|ref|ZP_04124117.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229079274|ref|ZP_04211819.1| Alanine racemase [Bacillus cereus Rock4-2]
 gi|229109560|ref|ZP_04239150.1| Alanine racemase [Bacillus cereus Rock1-15]
 gi|229127502|ref|ZP_04256494.1| Alanine racemase [Bacillus cereus BDRD-Cer4]
 gi|229144707|ref|ZP_04273107.1| Alanine racemase [Bacillus cereus BDRD-ST24]
 gi|29895750|gb|AAP09032.1| Alanine racemase [Bacillus cereus ATCC 14579]
 gi|228638759|gb|EEK95189.1| Alanine racemase [Bacillus cereus BDRD-ST24]
 gi|228655959|gb|EEL11805.1| Alanine racemase [Bacillus cereus BDRD-Cer4]
 gi|228673896|gb|EEL29150.1| Alanine racemase [Bacillus cereus Rock1-15]
 gi|228704024|gb|EEL56465.1| Alanine racemase [Bacillus cereus Rock4-2]
 gi|228796804|gb|EEM44171.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 408

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|58257634|dbj|BAD88778.1| alanine racemase [synthetic construct]
          Length = 359

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEGQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ VA  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERVAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|193885285|pdb|3B8W|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221p
 gi|193885286|pdb|3B8W|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221p
 gi|193885287|pdb|3B8W|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221p
 gi|193885288|pdb|3B8W|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221p
          Length = 379

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 173/368 (47%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 26  VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 83

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        + 
Sbjct: 84  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMX 142

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 143 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +   ++        Q V++  + +
Sbjct: 203 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLPDRSTGADFGCQPVMSLTSSL 261

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 262 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 310

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 311 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 370

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 371 SRVAMKYV 378


>gi|228920796|ref|ZP_04084136.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|229190195|ref|ZP_04317198.1| Alanine racemase [Bacillus cereus ATCC 10876]
 gi|228593312|gb|EEK51128.1| Alanine racemase [Bacillus cereus ATCC 10876]
 gi|228838907|gb|EEM84208.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 408

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|15804645|ref|NP_290686.1| alanine racemase [Escherichia coli O157:H7 EDL933]
 gi|15834289|ref|NP_313062.1| alanine racemase [Escherichia coli O157:H7 str. Sakai]
 gi|168748102|ref|ZP_02773124.1| alanine racemase [Escherichia coli O157:H7 str. EC4113]
 gi|168755220|ref|ZP_02780227.1| alanine racemase [Escherichia coli O157:H7 str. EC4401]
 gi|168760899|ref|ZP_02785906.1| alanine racemase [Escherichia coli O157:H7 str. EC4501]
 gi|168766310|ref|ZP_02791317.1| alanine racemase [Escherichia coli O157:H7 str. EC4486]
 gi|168774408|ref|ZP_02799415.1| alanine racemase [Escherichia coli O157:H7 str. EC4196]
 gi|168780463|ref|ZP_02805470.1| alanine racemase [Escherichia coli O157:H7 str. EC4076]
 gi|168784666|ref|ZP_02809673.1| alanine racemase [Escherichia coli O157:H7 str. EC869]
 gi|168798287|ref|ZP_02823294.1| alanine racemase [Escherichia coli O157:H7 str. EC508]
 gi|195935836|ref|ZP_03081218.1| alanine racemase [Escherichia coli O157:H7 str. EC4024]
 gi|208806109|ref|ZP_03248446.1| alanine racemase [Escherichia coli O157:H7 str. EC4206]
 gi|208812590|ref|ZP_03253919.1| alanine racemase [Escherichia coli O157:H7 str. EC4045]
 gi|208819299|ref|ZP_03259619.1| alanine racemase [Escherichia coli O157:H7 str. EC4042]
 gi|209397944|ref|YP_002273593.1| alanine racemase [Escherichia coli O157:H7 str. EC4115]
 gi|217325461|ref|ZP_03441545.1| alanine racemase [Escherichia coli O157:H7 str. TW14588]
 gi|254796072|ref|YP_003080909.1| alanine racemase [Escherichia coli O157:H7 str. TW14359]
 gi|261225171|ref|ZP_05939452.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255577|ref|ZP_05948110.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291285469|ref|YP_003502287.1| Alanine racemase, biosynthetic [Escherichia coli O55:H7 str.
           CB9615]
 gi|20137342|sp|Q8X5V2|ALR1_ECO57 RecName: Full=Alanine racemase, biosynthetic
 gi|12519004|gb|AAG59251.1|AE005638_5 alanine racemase 1 [Escherichia coli O157:H7 str. EDL933]
 gi|13364512|dbj|BAB38458.1| alanine racemase 1 [Escherichia coli O157:H7 str. Sakai]
 gi|187769867|gb|EDU33711.1| alanine racemase [Escherichia coli O157:H7 str. EC4196]
 gi|188017506|gb|EDU55628.1| alanine racemase [Escherichia coli O157:H7 str. EC4113]
 gi|189001846|gb|EDU70832.1| alanine racemase [Escherichia coli O157:H7 str. EC4076]
 gi|189357442|gb|EDU75861.1| alanine racemase [Escherichia coli O157:H7 str. EC4401]
 gi|189364060|gb|EDU82479.1| alanine racemase [Escherichia coli O157:H7 str. EC4486]
 gi|189368602|gb|EDU87018.1| alanine racemase [Escherichia coli O157:H7 str. EC4501]
 gi|189374890|gb|EDU93306.1| alanine racemase [Escherichia coli O157:H7 str. EC869]
 gi|189379189|gb|EDU97605.1| alanine racemase [Escherichia coli O157:H7 str. EC508]
 gi|208725910|gb|EDZ75511.1| alanine racemase [Escherichia coli O157:H7 str. EC4206]
 gi|208733867|gb|EDZ82554.1| alanine racemase [Escherichia coli O157:H7 str. EC4045]
 gi|208739422|gb|EDZ87104.1| alanine racemase [Escherichia coli O157:H7 str. EC4042]
 gi|209159344|gb|ACI36777.1| alanine racemase [Escherichia coli O157:H7 str. EC4115]
 gi|209751260|gb|ACI73937.1| alanine racemase 1 [Escherichia coli]
 gi|209751262|gb|ACI73938.1| alanine racemase 1 [Escherichia coli]
 gi|209751264|gb|ACI73939.1| alanine racemase 1 [Escherichia coli]
 gi|209751266|gb|ACI73940.1| alanine racemase 1 [Escherichia coli]
 gi|217321682|gb|EEC30106.1| alanine racemase [Escherichia coli O157:H7 str. TW14588]
 gi|254595472|gb|ACT74833.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O157:H7 str. TW14359]
 gi|290765342|gb|ADD59303.1| Alanine racemase, biosynthetic [Escherichia coli O55:H7 str.
           CB9615]
 gi|320190822|gb|EFW65472.1| Alanine racemase, biosynthetic [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638809|gb|EFX08455.1| alanine racemase [Escherichia coli O157:H7 str. G5101]
 gi|320654892|gb|EFX22853.1| alanine racemase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660740|gb|EFX28197.1| alanine racemase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665669|gb|EFX32706.1| alanine racemase [Escherichia coli O157:H7 str. LSU-61]
 gi|326341902|gb|EGD65685.1| Alanine racemase, biosynthetic [Escherichia coli O157:H7 str. 1125]
 gi|326346524|gb|EGD70258.1| Alanine racemase, biosynthetic [Escherichia coli O157:H7 str. 1044]
          Length = 359

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+   GE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|258405606|ref|YP_003198348.1| alanine racemase [Desulfohalobium retbaense DSM 5692]
 gi|257797833|gb|ACV68770.1| alanine racemase [Desulfohalobium retbaense DSM 5692]
          Length = 390

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/390 (27%), Positives = 160/390 (41%), Gaps = 34/390 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           S   +  +IDL A+ +N   +    G   +  AVVK NAYG G  ++A A   AG     
Sbjct: 2   SCRPIWAEIDLEAIAHNISEIRNAVGFGPQIMAVVKANAYGHGAVEVAQASLRAGASWLG 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
           V  V EG++LR     A I VL    P     +   +L   +S +      ++   +   
Sbjct: 62  VARVAEGIELREAGIAAPILVLGTSPPECASELLAWDLRQTVSGLDDARALARHARNQDK 121

Query: 121 SHPYALQVDTGFNRLGL--------SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
           +    L+VDTG  RLGL            A +            L  I +H ACAD    
Sbjct: 122 TLQVHLKVDTGMGRLGLLAGPELGGDFDAAGEEVVAIQQLSGIALEGIFTHFACADSRDK 181

Query: 173 HVNSVQLERFRTLI-----SHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
              S Q +RF   +          I     A+S+ I+  P  H  L R GI LYG     
Sbjct: 182 SSASRQWQRFTDFLETLDTRSLPRIPVRHAANSASIIDLPRTHLDLVRAGIMLYGLYPSA 241

Query: 227 NKSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
              H    ++  +T +ARI  ++   AG  VSYG        + IA   +GYADGY   L
Sbjct: 242 EVDHAGVRLKPAMTVKARISQVKDVPAGFCVSYGSTYTTPAPTRIATVPVGYADGYTRLL 301

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
           S                 + G  VP++G++ MD T+ D+     +  GD + + G     
Sbjct: 302 SSQ-----------AHMVVHGQRVPVVGRVCMDQTLLDVGGLPEVAAGDEVVLLGSQGEA 350

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +  D++A  +GT NY+++  +  R  + +
Sbjct: 351 CVSADELAELTGTINYEIVSTLMARVPRIF 380


>gi|193885281|pdb|3B8V|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221k
 gi|193885282|pdb|3B8V|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221k
 gi|193885283|pdb|3B8V|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221k
 gi|193885284|pdb|3B8V|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221k
          Length = 379

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 26  VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 83

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        + 
Sbjct: 84  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMX 142

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 143 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 203 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLKDRSTGADFGCQPVMSLTSSL 261

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 262 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 310

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 311 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 370

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 371 SRVAMKYV 378


>gi|49481282|ref|YP_036225.1| alanine racemase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332838|gb|AAT63484.1| alanine racemase [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 391

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 71  EAIELREAGINVPILILGYTSVASAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEITCMLDRRIPRVY 375


>gi|308172332|ref|YP_003919037.1| D-alanine racemase [Bacillus amyloliquefaciens DSM 7]
 gi|307605196|emb|CBI41567.1| D-alanine racemase [Bacillus amyloliquefaciens DSM 7]
 gi|328552144|gb|AEB22636.1| alanine racemase [Bacillus amyloliquefaciens TA208]
 gi|328910417|gb|AEB62013.1| D-alanine racemase [Bacillus amyloliquefaciens LL3]
          Length = 389

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/384 (27%), Positives = 167/384 (43%), Gaps = 30/384 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M++  F R    +I+L+A+K N   M    G N    AVVK NAYG G  ++  A   AG
Sbjct: 1   MNTASFYRDTWAEINLSAIKENITHMKKHIGENVHLMAVVKANAYGHGDLEVGKAALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL  + P   +   + ++     SV  L   ++ +
Sbjct: 61  ASCLAVAILDEAISLRKRGITAPILVLGAVPPEYVQAAAEYDVTLTGYSVEWLQEAARHL 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVN 175
               + P+ L+VDTG NRLG+  +E +       ++  G +   + +H A AD+ +    
Sbjct: 121 GS-ETVPFHLKVDTGMNRLGVKTEEEIQSVLKILSQNPGLVCKGVFTHFATADEKNRDYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229
             Q ERF+ LI+    K +    A+S+  L      F   R GIS+YG     +      
Sbjct: 180 LFQFERFKKLIAPLPLKELMVHCANSAAGLRLKKGFFNAVRFGISMYGLRPSADIQNEIP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++   T  + +  ++K   GE VSYG      +D  I    IGYADG+   LSG    
Sbjct: 240 FQLKPAFTLHSVLSHVKKIRKGESVSYGATYTAEKDQWIGTVPIGYADGWLRKLSG---- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       I G  + I G+I MD  M ++  S     G  + + G      I +D+
Sbjct: 296 --------TAVLIDGKRMNIAGRICMDQLMVELDQSYP--PGTKVTLIGSQKEETITMDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY++   I +R  + +
Sbjct: 346 IAGRLETINYEIPCTISSRVPRMF 369


>gi|15602278|ref|NP_245350.1| alanine racemase [Pasteurella multocida subsp. multocida str. Pm70]
 gi|20137233|sp|Q9CNL5|ALR_PASMU RecName: Full=Alanine racemase
 gi|12720664|gb|AAK02497.1| Alr [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 360

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/365 (29%), Positives = 176/365 (48%), Gaps = 18/365 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK+N  ++   +  ++  AVVK NAYG G   ++ A     V  F V  
Sbjct: 4   KPATAKISSVALKHNIQTIKQKAPQSKIIAVVKANAYGHGVVFVS-AAVEELVDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    ++  +I   N+  V+ +V QL    K         
Sbjct: 63  LEEALSLRSNGITKPILLLEGFFCDKDLPVIAINNIQTVVHNVEQLEAL-KAAKVPNPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L++   F     + +        +SH + AD+       +QL RF
Sbjct: 122 VWLKIDTGMHRLGVALEDVEYFYQALRDSENVDPQIGFVSHFSRADELECDYTKLQLTRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240
                +  G E S+A+S GIL   + H    RPGI +YG +      + + +  V+T  +
Sbjct: 182 LNATQNKAG-EKSIAASGGILFWESSHLDWIRPGIIMYGISPINVPAQEYDLTPVMTLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I I++   GE V YGG     +D+ I V AIGY DGYP             +  G   
Sbjct: 241 SLIAIKQHKKGEPVGYGGIWVSDKDTKIGVVAIGYGDGYPR-----------DIPTGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G  VPI+G+++MDM   D+      +VGD + ++G ++ ++++A  SG  +Y+L+ +
Sbjct: 290 YLNGRRVPIVGRVSMDMLTVDLGAEAQDKVGDEVILWGKELPIEEIADISGVISYELITK 349

Query: 361 IGTRY 365
           +  R 
Sbjct: 350 LTPRV 354


>gi|283836658|ref|ZP_06356399.1| alanine racemase [Citrobacter youngae ATCC 29220]
 gi|291067398|gb|EFE05507.1| alanine racemase [Citrobacter youngae ATCC 29220]
          Length = 359

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 171/367 (46%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G     +   I    L   + ++ QL                ++
Sbjct: 64  LRLRAGGITQPVLLLEGFFDATDLPTISAQRLHTAVHNLEQLEALEAA-KLAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       + + Q   I+SH A AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLTQCENVRQPVNIVSHFARADEPECGATEKQLDIFNRFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPG+ LYG +      I      Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWARPGLILYGVSPLENHSIGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG  +  RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWQSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPEAQDKAGDSVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|302184903|ref|ZP_07261576.1| alanine racemase [Pseudomonas syringae pv. syringae 642]
          Length = 357

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 170/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ +  QL    +    G    
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELALIVEHDLWTVVHATWQLEAIEQA-HLGKPIT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH + AD+ +S  +  QL  F 
Sbjct: 119 VWLKLDTGMHRVGLHPHEYQAAYQRLLATGKVARIVLMSHFSRADELNSGCSDEQLAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
           T        E SL +S  +L  P      +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 TFRKGLAA-ETSLKNSPAVLGWPQIPSDWSRPGIMLYGATPFEQVHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+   GE V YG      R S I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPVGEPVGYGATFVCDRPSRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTDVPKAGLGSRVELWGKQVLASEVAQGAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|28373266|pdb|1EPV|A Chain A, Alanine Racemase With Bound Inhibitor Derived From D-
           Cycloserine
 gi|28373267|pdb|1EPV|B Chain B, Alanine Racemase With Bound Inhibitor Derived From D-
           Cycloserine
 gi|28373268|pdb|1FTX|A Chain A, Crystal Stucture Of Alanine Racemase In Complex With D-
           Alanine Phosphonate
 gi|28373269|pdb|1FTX|B Chain B, Crystal Stucture Of Alanine Racemase In Complex With D-
           Alanine Phosphonate
          Length = 387

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 153/378 (40%), Gaps = 26/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     ++DL A+ +N  ++  L  +     AVVK NAYG G  ++A     AG     V
Sbjct: 4   HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAV 63

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR    +A I VL    P    +     +   +     L   S L S     
Sbjct: 64  AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 123

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
            + L +DTG  RLG+  +E          +     L  + +H A AD+ ++   S Q  R
Sbjct: 124 HFHLXMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           F  ++            A+S+  L  P+  F + R GI++YG            +P++  
Sbjct: 184 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 243

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VSYG       +  I    IGYADG+   L            
Sbjct: 244 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 294

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  +   L +  G  + + G      I +DDVA    
Sbjct: 295 ---HVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 349

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 350 TINYEVPCTISYRVPRIF 367


>gi|261867673|ref|YP_003255595.1| alanine racemase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293392262|ref|ZP_06636596.1| alanine racemase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261413005|gb|ACX82376.1| alanine racemase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290952796|gb|EFE02915.1| alanine racemase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 360

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/369 (29%), Positives = 176/369 (47%), Gaps = 19/369 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH  +    KI   ALK+N  ++   +  ++  AVVK NAYG G   ++ A     V  F
Sbjct: 1   MH-MKPATAKISSVALKHNIQTIKQKAPESKIIAVVKANAYGHGVVFVSSA-VENLVDCF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE +KLR       I +L G    ++  ++   N+  V+ S  QL    +  +  
Sbjct: 59  GVARLEEALKLRSNGITKPILLLEGFFSAKDLPVLAVNNIQTVVHSQEQLDALEQAKTPN 118

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQ 178
                 L++DTG +RLG+ L E   F     +      +   +SH + AD+ +      Q
Sbjct: 119 -PIKVWLKIDTGMHRLGVHLDEVDAFYQKLKSLPCVDPNIGFVSHFSRADELACGYTEKQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVV 236
           L RF       KG E S+++S GIL   + H    RPGI +YG +      K + +  V+
Sbjct: 178 LARFLQATEG-KGGERSISASGGILFWQDAHLDWIRPGIIMYGISPNNTAGKEYGLIPVM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              + +I +R+   GE V YGG     +D+ I V AIGY DGYP             V  
Sbjct: 237 NLTSSLIAVREHKKGEPVGYGGVWMSDKDTKIGVVAIGYGDGYPR-----------DVPE 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G   ++ G  VPI+GK++MDM   D+      +VGD + ++G ++ ++++A  +G  +Y+
Sbjct: 286 GTPVYLNGRRVPIVGKVSMDMLTVDLGADSQDKVGDEVILWGKELPIEEIAAITGVISYE 345

Query: 357 LLVRIGTRY 365
           L+ ++  R 
Sbjct: 346 LITKLTPRV 354


>gi|209751258|gb|ACI73936.1| alanine racemase 1 [Escherichia coli]
 gi|320644177|gb|EFX13242.1| alanine racemase [Escherichia coli O157:H- str. 493-89]
 gi|320649496|gb|EFX18020.1| alanine racemase [Escherichia coli O157:H- str. H 2687]
          Length = 359

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRPTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+   GE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|4558012|pdb|2SFP|A Chain A, Alanine Racemase With Bound Propionate Inhibitor
 gi|4558013|pdb|2SFP|B Chain B, Alanine Racemase With Bound Propionate Inhibitor
 gi|21465981|pdb|1L6F|A Chain A, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L-
           Alanine
 gi|21465982|pdb|1L6F|B Chain B, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L-
           Alanine
 gi|21465983|pdb|1L6G|A Chain A, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-D-
           Alanine
 gi|21465984|pdb|1L6G|B Chain B, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-D-
           Alanine
 gi|37926920|pdb|1NIU|A Chain A, Alanine Racemase With Bound Inhibitor Derived From L-
           Cycloserine
 gi|37926921|pdb|1NIU|B Chain B, Alanine Racemase With Bound Inhibitor Derived From L-
           Cycloserine
          Length = 388

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 153/378 (40%), Gaps = 26/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     ++DL A+ +N  ++  L  +     AVVK NAYG G  ++A     AG     V
Sbjct: 5   HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR    +A I VL    P    +     +   +     L   S L S     
Sbjct: 65  AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
            + L +DTG  RLG+  +E          +     L  + +H A AD+ ++   S Q  R
Sbjct: 125 HFHLXMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 184

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           F  ++            A+S+  L  P+  F + R GI++YG            +P++  
Sbjct: 185 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VSYG       +  I    IGYADG+   L            
Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  +   L +  G  + + G      I +DDVA    
Sbjct: 296 ---HVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 351 TINYEVPCTISYRVPRIF 368


>gi|161505290|ref|YP_001572402.1| alanine racemase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866637|gb|ABX23260.1| hypothetical protein SARI_03431 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 359

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 172/367 (46%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I    L   + +  QLT    +          ++
Sbjct: 64  LRLREGGITQPILLLEGFFDAADLPTISAQRLHTAVHNQEQLTALEAV-ELAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   I+SH A AD+P       QLE F    
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLEIFNAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +
Sbjct: 183 QDKAG-KRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I  R   AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAARDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+  +   + GD + ++G D+ ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPNAQDKAGDPVVLWGEDLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMEY 357


>gi|193885202|pdb|2RJG|A Chain A, Crystal Structure Of Biosynthetic Alaine Racemase From
           Escherichia Coli
 gi|193885203|pdb|2RJG|B Chain B, Crystal Structure Of Biosynthetic Alaine Racemase From
           Escherichia Coli
 gi|193885204|pdb|2RJG|C Chain C, Crystal Structure Of Biosynthetic Alaine Racemase From
           Escherichia Coli
 gi|193885205|pdb|2RJG|D Chain D, Crystal Structure Of Biosynthetic Alaine Racemase From
           Escherichia Coli
 gi|193885206|pdb|2RJH|A Chain A, Crystal Structure Of Biosynthetic Alaine Racemase In D-
           Cycloserine-Bound Form From Escherichia Coli
 gi|193885207|pdb|2RJH|B Chain B, Crystal Structure Of Biosynthetic Alaine Racemase In D-
           Cycloserine-Bound Form From Escherichia Coli
 gi|193885208|pdb|2RJH|C Chain C, Crystal Structure Of Biosynthetic Alaine Racemase In D-
           Cycloserine-Bound Form From Escherichia Coli
 gi|193885209|pdb|2RJH|D Chain D, Crystal Structure Of Biosynthetic Alaine Racemase In D-
           Cycloserine-Bound Form From Escherichia Coli
          Length = 379

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 26  VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 83

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        + 
Sbjct: 84  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMX 142

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 143 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 203 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 261

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 262 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 310

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 311 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 370

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 371 SRVAMKYV 378


>gi|170728531|ref|YP_001762557.1| alanine racemase [Shewanella woodyi ATCC 51908]
 gi|254802385|sp|B1KHY4|ALR_SHEWM RecName: Full=Alanine racemase
 gi|169813878|gb|ACA88462.1| alanine racemase [Shewanella woodyi ATCC 51908]
          Length = 358

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 178/367 (48%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I   ALKNN   +  ++ N+   AVVK N YG G   +A  L       F +  
Sbjct: 3   PFPRAEISAQALKNNLSRLRQIAPNSSVMAVVKANGYGHGLLNVASCLTE--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +A++ +L G         + +  +  VI +  QL       S      
Sbjct: 61  LEEALALRAGGVKAKLVLLEGFFRQVDLTTLVEHGIDTVIHNEVQLDMLENA-SLSKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++D+G +RLG + ++            ++ +   I+SH ACAD+P + +   QL+ F
Sbjct: 120 VWLKLDSGMHRLGFTPEQFAQVYARLEACPQVAKPINIMSHFACADEPDNPMTQEQLQVF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
             L  + KG   +LA+S+G L  P+      RPGI+LYG +     + ++H ++  +   
Sbjct: 180 EALTKNSKG-YRTLANSAGTLYWPDSQADWIRPGIALYGVSPVIGDLGRNHGLEPAMKLV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R+  AG+ V YG       D+ + V AIGY DGYP            +   G  
Sbjct: 239 SQLIAVREHKAGQPVGYGCFWHAKADTRLGVVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G  VP++G+++MDM   D+       +GD + ++G ++ +++VA   GT  Y+L+ 
Sbjct: 288 VWVNGRRVPVVGRVSMDMLTVDLGIDAKDSIGDDVVLWGKELPVEEVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|313501244|gb|ADR62610.1| DadX [Pseudomonas putida BIRD-1]
          Length = 357

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/369 (28%), Positives = 171/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I +  L  V+ S+ QL    K         
Sbjct: 60  IEEALELRAAGIKAPVLLLEGFFEASELALIAEHGLWCVVHSLWQLEAIEK-TPLHKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++  D              +++SH A AD+  +   + Q+  F 
Sbjct: 119 VWLKLDSGMHRVGLHPKDYHDAYQRLLASGKVSRIVLMSHFARADELDADATAQQIAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
                    E SL +S G+L  P       RPG+ LYG T       ++  +Q V+T ++
Sbjct: 179 AARQGLAA-ECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPVMTLQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+TD     VG  ++ +G  +   +VA  +GT  Y +   
Sbjct: 287 LVAGKRTQLIGRVSMDMLSIDLTDVPQATVGSPVEFWGKQVLASEVAAHAGTIPYQIFCN 346

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 347 L-KRVPRDY 354


>gi|152972916|ref|YP_001338062.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957765|gb|ABR79795.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 359

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 174/367 (47%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G    ++  +I    L   + S  QL    +           ++
Sbjct: 64  LRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQA-DLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +        +    Q V+T  + +
Sbjct: 183 EGKPGL-RSIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGRDFGCQPVMTLSSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|330812573|ref|YP_004357035.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380681|gb|AEA72031.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 357

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 171/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     ++G A+  AV+K +AYG G  + A AL +     F V  
Sbjct: 2   RPARALIDLQALRHNYQLAREITG-AKALAVIKADAYGHGAVRCAEALQDT-ADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +  I +L G     E  +I + +   V+ S+ QL    K  +      
Sbjct: 60  IEEALELRAGGIRGPILLLEGFFEASELPLIVEHDFWCVVHSLWQLEAIEKA-ALSQPIT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL   +                 +++SH A AD+     ++ QL  F 
Sbjct: 119 VWLKLDSGMHRVGLHPADYQAAYRRLLASGKVAKIVLMSHFARADELHDPSSTEQLAIFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    + SL +S  +L  P       RPGI LYG T        +  +Q V+T E+
Sbjct: 179 KARQGLVA-QISLRNSPAVLGWPQIPSDWVRPGIMLYGATPFDEPNAVASRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG +   T+ + + V A+GYADGYP                G   
Sbjct: 238 KIICVRELPAGEPVGYGARFVTTQPTRVGVVAMGYADGYPRQA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+T+     +G  ++++G +I   DVA A+ T  Y +   
Sbjct: 287 LVDGQRSQLVGRVSMDMLCVDLTNVPQAGLGSTVELWGKNILASDVAKAADTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRLYS 355


>gi|154249706|ref|YP_001410531.1| alanine racemase [Fervidobacterium nodosum Rt17-B1]
 gi|154153642|gb|ABS60874.1| alanine racemase [Fervidobacterium nodosum Rt17-B1]
          Length = 364

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/377 (27%), Positives = 161/377 (42%), Gaps = 26/377 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M S       I++    +N          A+   VVK NAYG G  ++A A    G+  F
Sbjct: 1   MESRRTY-AVINVRNYLDNLRFFQTHCAPAKVMPVVKANAYGHGAVQLAKAAQKIGIDYF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V  +EE ++LR +     I V   I P    I  + N+   + S  QL  Y+K +    
Sbjct: 60  AVAFLEEAIELRKHGISKDILVFNYIEPDLLHIAMENNITITLYSWEQLWKYTKYV---W 116

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSV 177
                +++DTG  RLG+  +EA DF  ++ N    ++    +H A AD            
Sbjct: 117 RPKAHIKIDTGMRRLGVYPEEAKDFIESARN-VGFEVEGAYTHFAVADSLDDEDVKFTQQ 175

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVV 236
           Q+E+F  L    K     L +S   +      F   R GI+ YG     +  S  ++ V+
Sbjct: 176 QVEKFANLNLDVK--IKHLCNSGASVSKIVNCFDYVRVGIASYGLQPSDSVYSEQLKPVL 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +  +  ++    G+ VSYG   K   +  IA   +GYADGY   LS            
Sbjct: 234 SWKTTVSHVKTIQPGDSVSYGRTFKAFTEMRIATIPVGYADGYWRHLSN----------- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
            G   I G   PI+G++ MD  M D+T    +++GD + + G      I  +++A   GT
Sbjct: 283 KGYVLIHGEKCPIIGRVCMDQFMVDVTHLEDVKIGDEVILIGKQGDNIITAEEIAKLVGT 342

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++  RI  R  + Y
Sbjct: 343 INYEVTCRISERVPRKY 359


>gi|229593333|ref|YP_002875452.1| alanine racemase [Pseudomonas fluorescens SBW25]
 gi|229365199|emb|CAY53479.1| alanine racemase, catabolic [Pseudomonas fluorescens SBW25]
          Length = 357

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 173/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     ++G A+  AVVK +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLAREVTG-AKALAVVKADAYGHGAVRVAQAL-EADADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ S+ QL    +         
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELPLILEHDLWCVVHSLWQLEAIEQAQ-LRTPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++  +              +++SH A AD+     +  Q+  F 
Sbjct: 119 VWLKLDSGMHRVGLHPKDFHEAYQRLLASGKVAKIVLMSHFARADELDCVSSDEQVAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    E SL +S  +L  P+      RPGI LYG T        +  +Q V+T E+
Sbjct: 179 AARQGLSA-EVSLRNSPSVLGWPSVSSDWVRPGIMLYGATPFGEDQALAARLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG +    +   I V A+GYADGYP                G   
Sbjct: 238 KVICVRELPAGEPVGYGAKFITPKPMRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    +LG+++MDM   D+TD     +G  ++++G +I   D+A A+ T  Y +   
Sbjct: 287 LVAGQRSQLLGRVSMDMLCVDLTDVPQAGLGATVELWGKNILASDIATAAETIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRLYS 355


>gi|58257632|dbj|BAD88777.1| alanine racemase [synthetic construct]
          Length = 359

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEGQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G    ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGFPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|238892526|ref|YP_002917260.1| alanine racemase [Klebsiella pneumoniae NTUH-K2044]
 gi|238544842|dbj|BAH61193.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 359

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 174/367 (47%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G    ++  +I    L   + S  QL    +           ++
Sbjct: 64  LRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQA-DLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +        +    Q V+T  + +
Sbjct: 183 EGKPGL-RSIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGRDFGCQPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|320322231|gb|EFW78327.1| alanine racemase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 357

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 167/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + N   V+ S  QL    +         
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELALIVEHNFWTVVHSTWQLEAIEQAQ-LAKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH A AD+ +S  +  Q   F 
Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
           +        E SL +S  +L  P+     +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 SFRKGLAA-EISLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|228952487|ref|ZP_04114567.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229069638|ref|ZP_04202925.1| Alanine racemase [Bacillus cereus F65185]
 gi|229150330|ref|ZP_04278548.1| Alanine racemase [Bacillus cereus m1550]
 gi|229178496|ref|ZP_04305862.1| Alanine racemase [Bacillus cereus 172560W]
 gi|228605004|gb|EEK62459.1| Alanine racemase [Bacillus cereus 172560W]
 gi|228633139|gb|EEK89750.1| Alanine racemase [Bacillus cereus m1550]
 gi|228713478|gb|EEL65366.1| Alanine racemase [Bacillus cereus F65185]
 gi|228807182|gb|EEM53721.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 408

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++IDL A+K+N         +   +  A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L   +++ +         
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|330445019|ref|ZP_08308673.1| alanine racemase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493137|dbj|GAA03170.1| alanine racemase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 359

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 180/369 (48%), Gaps = 22/369 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL +N   +   + N++  AVVK NAYG G  ++A +L N  V  + V  +EE 
Sbjct: 6   AHIDTDALAHNLGLIRQQAPNSKILAVVKANAYGHGLLRVAQSLTN--VDAYGVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G + P    ++   N+  V+ S+ QL    +           ++
Sbjct: 64  LMLRAGGVVKPILLLEGFYAPSDLPVLVTNNIHTVVHSIEQLEALEQA-ELDSQVKVWVK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++  DF       + + +    ISH   ADD SS +   QL+ F  L 
Sbjct: 123 IDTGMHRLGVRPEDLTDFMARLNACENVAKPLRFISHFGNADDLSSDITLQQLDTFLNLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVVTAEAR 241
             Y+G E SLA+S+G+L  P+   +  RPGI +YG +      +   ++ ++ V+T  + 
Sbjct: 183 QDYQG-ERSLAASAGVLAWPDSQLEWIRPGIIMYGVSPFNEPERYASAYDLKPVMTLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II +R    GE V YGG     RD+ + V AIGY DGYP +              G    
Sbjct: 242 IIAVRDVKKGEKVGYGGIWTSERDTKMGVIAIGYGDGYPRSAPN-----------GTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VP+ G+++MDM   D+      +VGD   ++G  +  + VA   GT  Y+L+ ++
Sbjct: 291 VNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDTAILWGEGLPAEIVAEHIGTIAYELITKL 350

Query: 362 GTRYAKFYT 370
             R A  YT
Sbjct: 351 TPRVAMAYT 359


>gi|42781229|ref|NP_978476.1| alanine racemase [Bacillus cereus ATCC 10987]
 gi|42737151|gb|AAS41084.1| alanine racemase [Bacillus cereus ATCC 10987]
          Length = 391

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 71  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNAAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|193885277|pdb|3B8U|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221a
 gi|193885278|pdb|3B8U|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221a
 gi|193885279|pdb|3B8U|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221a
 gi|193885280|pdb|3B8U|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant E221a
          Length = 379

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 26  VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 83

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        + 
Sbjct: 84  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMX 142

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 143 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 203 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLADRSTGADFGCQPVMSLTSSL 261

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 262 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 310

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 311 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 370

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 371 SRVAMKYV 378


>gi|73490247|dbj|BAE19803.1| alanine racemase [Pseudomonas fluorescens]
          Length = 357

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 170/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     ++G A+  AV+K +AYG G  + A AL       F V  
Sbjct: 2   RPARALIDLQALRHNYQLAREVTG-AKALAVIKADAYGHGAVRCAEALQET-ADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +  I +L G     E  +I + +   V+ S+ QL    K  +      
Sbjct: 60  IEEALELRAAGIRGPILLLEGFFEADELPLIVEHDFWCVVHSLWQLEAIEKA-ALSQPIT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL   +                 +++SH A AD+     ++ QL  F 
Sbjct: 119 VWLKLDSGMHRVGLHPADYQAAYRRLLASGKVAKIVLMSHFARADELHDSSSTEQLAIFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    + SL +S  +L  P       RPGI LYG T        +  +Q V+T E+
Sbjct: 179 KARQGLVA-QISLRNSPAVLGWPQIPSDWVRPGIMLYGATPFDEPNAVASRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG +   T+ + + V A+GYADGYP                G   
Sbjct: 238 KIISVRELPAGEPVGYGARFVTTQPTRVGVVAMGYADGYPRQA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            ++G    ++G+++MDM   D+T      +G  ++++G +I   DVA A+ T  Y +   
Sbjct: 287 LVEGQRSQLVGRVSMDMLAVDLTHIPQAGLGSTVELWGKNILASDVAKAADTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRLYS 355


>gi|73490240|dbj|BAE19797.1| alanine racemase [Pseudomonas fluorescens]
          Length = 357

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 170/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     ++G A+  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLAREVTG-AKALAVIKADAYGHGAVRCAQAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E  +I + +   V+ S+ QL    +         
Sbjct: 60  IEEALELRAAGIRAPILLLEGFFEADELPLIVEHDFWCVVHSLWQLDAIEQAR-LAKPIH 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL   +                 +++SH A AD+     +  Q+  F 
Sbjct: 119 VWLKLDSGMHRVGLHPNDYKAAYQRLQASANVAKIVLMSHFARADELDCTRSVEQVAVFL 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
              +     E SL +S  +L  P       RPG+ LYG +        +  +Q V+T E+
Sbjct: 179 GARADLTA-EISLRNSPAVLGWPRVPSDWVRPGLMLYGSSPFDEPQATASRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG +    +   I V A+GYADGYP                G   
Sbjct: 238 KVICVRELPAGEPVGYGARFITPKPMRIGVVAMGYADGYPRQA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           F+ G    +LG+++MDM   D+TD     +G  ++++G +I   +VA A+ T  Y +   
Sbjct: 287 FVDGVRSQLLGRVSMDMLCIDLTDVPQAGLGSTVELWGKNILASEVATAADTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-KRVPRLYS 355


>gi|154684967|ref|YP_001420128.1| hypothetical protein RBAM_004980 [Bacillus amyloliquefaciens FZB42]
 gi|154350818|gb|ABS72897.1| Alr [Bacillus amyloliquefaciens FZB42]
          Length = 389

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/384 (27%), Positives = 168/384 (43%), Gaps = 30/384 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M++  F R    +I+L+A+K N   M    G N    AVVK NAYG G  ++  A   AG
Sbjct: 1   MNTASFYRETWAEINLSAIKENVTHMKKHIGQNVHLMAVVKANAYGHGDLEVGKAALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL  + P   +   + ++     SV  L   ++ +
Sbjct: 61  ASCLAVAILDEAISLRKRGITAPILVLGAVPPEYVQAAAEYDVTLTGYSVEWLQEAARHL 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVN 175
               + P+ L+VDTG NRLG+  +E +       ++  G +   + +H A AD+ +    
Sbjct: 121 GSA-TVPFHLKVDTGMNRLGVKTEEEIQSVLKILSQNPGLVCKGVFTHFATADEKNRDYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229
             Q +RF+TLI+    K +    A+S+  L      F   R GIS+YG     +      
Sbjct: 180 LFQFDRFKTLIAPLPLKELMVHCANSAAGLRLKKGFFNAVRFGISMYGLRPSADIQSEIP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++      + +  ++K   GE VSYG      +D  I    IGYADG+   LSG    
Sbjct: 240 FQLKPAFALHSVLSHVKKIRKGESVSYGATYTAEKDQWIGTVPIGYADGWLRKLSGTS-- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       I G  + I G+I MD  M ++  S     G  + + G      I +D+
Sbjct: 298 ----------VLIGGKRMNIAGRICMDQLMVELDQSYP--PGTKVTLIGSQKEETITMDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY++   I +R  + +
Sbjct: 346 IAGRLGTINYEVPCTISSRVPRMF 369


>gi|330964276|gb|EGH64536.1| alanine racemase [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 357

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 170/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARDSSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E  +I + +L  V+ +V QL    +    G    
Sbjct: 60  IEEALELRTAGIRAPILLLEGFFEADELALIVEHDLWTVVHAVWQLEAIEQAQP-GKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH +CAD+ +S  +  Q+  F 
Sbjct: 119 VWLKLDTGMHRVGLHPCEYRAAYQRLLATGKVARVVLMSHFSCADELNSACSDQQVAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    E SL +S  ++  P  H   +R GI LYG T        +  +Q V+T E+
Sbjct: 179 AARQGLVA-EISLKNSPAVMGWPKIHSDWSRTGIMLYGATPFDQAQPLAKRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG      R   I   A+GYADGYP                G   
Sbjct: 238 KVISVRELPAGEAVGYGATFVSERPLRIGAVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  +GT  Y +   
Sbjct: 287 LIDGQRSRLLGRVSMDMLCIDLTDLPQAGLGSRVELWGKGVLASEVATQAGTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|261341531|ref|ZP_05969389.1| alanine racemase [Enterobacter cancerogenus ATCC 35316]
 gi|288316330|gb|EFC55268.1| alanine racemase [Enterobacter cancerogenus ATCC 35316]
          Length = 359

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/367 (29%), Positives = 173/367 (47%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I + +L   + +  QL    +           ++
Sbjct: 64  LRLRAGGITQPILLLEGFFEAADLPTIAEQHLHTSVHNEEQLVAL-ETAELSEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEDAETFYQRLCQCKNVRQPVNIVSHFARADEPECGATEQQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G   S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +
Sbjct: 183 EGKPGA-RSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLVSNL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWTSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  V ++G++ MDM   D+      + GD + ++G  + ++ +A  +G + Y+L+ R+ 
Sbjct: 291 NGREVKLVGRVAMDMICVDLGPDAQDKAGDDVVMWGEGLPVERIAEMTGVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|229167180|ref|ZP_04294921.1| Alanine racemase [Bacillus cereus AH621]
 gi|228616218|gb|EEK73302.1| Alanine racemase [Bacillus cereus AH621]
          Length = 398

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 161/375 (42%), Gaps = 25/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL AL+ N+               VVK NAYG G   IA A+  AG     V  V+E
Sbjct: 11  IEVDLNALQRNFQQYKQAIPFGTAIMTVVKANAYGHGAVPIAKAVTEAGTSHLAVAFVDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           G++LR       I +               +L   + ++  L    ++ S    +    +
Sbjct: 71  GIELREAGITVPILIFGYTPYEAIVDAITYDLSMTVYTIEDLHAIEEVASQMEKNAYIHI 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG +RLGL L E   F       K  Q+  + +H ACAD+       +Q E F+  +
Sbjct: 131 KIDTGMSRLGLQLNEVTLFLQTLKCTKYIQVEGMYTHFACADERDKMYTLMQQEVFQKAV 190

Query: 187 SHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           S  + ++         +S+  +        + R GI+LYG     +   ++  +Q ++  
Sbjct: 191 SKAEELQIVIPWIHANNSAATIDMRETKGNMVRLGIALYGLYPSADVNQEAISLQPILIF 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++++  I+K   G  V YG     T +  IA   +GYADG    LS             G
Sbjct: 251 KSKVAHIKKVKKGNGVGYGATYTATGEEWIATIPVGYADGVSRQLSN-----------KG 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
              IKG  VPI+G+I MD  M D+T  + I VGD +  +G      I +D VA    T N
Sbjct: 300 FVLIKGMKVPIIGRICMDQLMLDVTKIMPIHVGDEVVFYGNQGEESISVDCVADILSTIN 359

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   +  R  + Y
Sbjct: 360 YEITCMLSRRIPRIY 374


>gi|160879061|ref|YP_001558029.1| alanine racemase [Clostridium phytofermentans ISDg]
 gi|160427727|gb|ABX41290.1| alanine racemase [Clostridium phytofermentans ISDg]
          Length = 389

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 165/385 (42%), Gaps = 29/385 (7%)

Query: 2   HSNEFLRLK--IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           ++  +LR+   I+L A+ +N       +       AV+K + YG G   IA A  +  V+
Sbjct: 6   YNQRYLRVSANINLDAIIHNVAEARKNIKKETGIFAVIKADGYGHGAVPIARA-IDNDVE 64

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            + V  VEEG++LR       I +L    P     I   +L   +  +       ++   
Sbjct: 65  AYAVAIVEEGIELREAGITKPILILGYTAPELLTEIVQYDLTQTVFQLSMAEKLDEIART 124

Query: 119 -GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G      +++DTG +R+G     E++D            L  I +H+ACAD        
Sbjct: 125 LGKVAKIHIKLDTGMSRIGYQPTAESIDEIVRMKKLSNLMLEGIFTHMACADMTDKTSAK 184

Query: 177 VQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q E F   ++  +  G++     +++S+G +  P  +  + R GISLYG          
Sbjct: 185 KQFELFTAFVNQLEEQGVKLPIQHISNSAGTIDLPEMNLSMVRFGISLYGLYPSEEVDKN 244

Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               +  +  +  I  +++   G  + YG      +   IA   +GY DG+P  LS +  
Sbjct: 245 HLSLEPAMELKTHISFVKELEPGHGIGYGSTFVTKKTMTIATVPVGYGDGFPRQLSNV-- 302

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G+  + G   PI+G+I MD  M D+TD   ++ GD + + G D    I ++
Sbjct: 303 ---------GRVLVHGEFAPIVGRICMDQFMIDVTDIPEVKQGDIVTLVGRDGDNIIPVE 353

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           + A  +G+ NY+ +  +G R  + Y
Sbjct: 354 EPADLAGSFNYEFVCNVGKRIPRVY 378


>gi|312135627|ref|YP_004002965.1| alanine racemase [Caldicellulosiruptor owensensis OL]
 gi|311775678|gb|ADQ05165.1| alanine racemase [Caldicellulosiruptor owensensis OL]
          Length = 390

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 95/379 (25%), Positives = 161/379 (42%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            +  +IDL  L  N  ++   +    +  AVVK +AYG G  +I+  L   GV    V  
Sbjct: 9   RVWAEIDLDNLVYNLENIKKKILPQTKIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAI 68

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           ++E ++LR +     I +L        + + +  +   + +  Q  + SK     G    
Sbjct: 69  IDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSKAAQKIGKKAK 128

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLER 181
             ++VDTG  R+G    +++++   N       +L  I SH  +  D  S      Q  +
Sbjct: 129 IHIKVDTGMGRIGFLCCEQSVNTILNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFMK 188

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F   +              +A+SS  +  P Y   + R G+ LYG      + +   ++ 
Sbjct: 189 FENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHINLKP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+    S          
Sbjct: 249 VMSIKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------- 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
                  IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A   
Sbjct: 302 ----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQI 357

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++     R  + Y
Sbjct: 358 GTINYEVVCSFSKRIPRVY 376


>gi|120600208|ref|YP_964782.1| alanine racemase [Shewanella sp. W3-18-1]
 gi|254802384|sp|A1RNI3|ALR_SHESW RecName: Full=Alanine racemase
 gi|120560301|gb|ABM26228.1| alanine racemase [Shewanella sp. W3-18-1]
          Length = 358

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 178/367 (48%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I  +AL+NN   +   +  ++  AVVK N YG G   +A  L N     F +  
Sbjct: 3   PFPRAEISSSALQNNLAVLRQQARASQVMAVVKANGYGHGLLNVANCLVN--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +AR+ +L G     +  ++   ++  V+    Q+    ++        
Sbjct: 61  LEEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQV-KLTKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G +RLG++ ++             + +   +++H ACAD+P +H   VQ+  F
Sbjct: 120 VWLKVDSGMHRLGVTPEQFATVYARLMACPNIAKPIHLMTHFACADEPDNHYTDVQMAAF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239
             L +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +   
Sbjct: 180 NELTAGLPGF-RTLANSAGALYWPKSQGDWIRPGIALYGVSPVAGDCGTNHGLIPAMNLV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+I +R   A + V YG      +D+ + V AIGY DGYP            +   G  
Sbjct: 239 SRLIAVRDHKANQPVGYGCYWTAKQDTRLGVVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G  VPI+G+++MDM   D+    + +VGD + ++G D+ +++VA   GT  Y+L+ 
Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGQDATDKVGDDVLLWGQDLPVEEVAERIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|206975085|ref|ZP_03235999.1| alanine racemase [Bacillus cereus H3081.97]
 gi|217959579|ref|YP_002338131.1| alanine racemase [Bacillus cereus AH187]
 gi|222095721|ref|YP_002529778.1| alanine racemase [Bacillus cereus Q1]
 gi|206746506|gb|EDZ57899.1| alanine racemase [Bacillus cereus H3081.97]
 gi|217065584|gb|ACJ79834.1| alanine racemase [Bacillus cereus AH187]
 gi|221239779|gb|ACM12489.1| alanine racemase [Bacillus cereus Q1]
          Length = 391

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 71  EAIELREAGINVPILILGYTSVASAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|20137250|sp|Q9S5V6|ALR_BACPS RecName: Full=Alanine racemase
 gi|4586399|dbj|BAA76373.1| alanine racemase [Bacillus psychrosaccharolyticus]
          Length = 383

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 161/384 (41%), Gaps = 30/384 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R    +I+L A+  N  +M   L       AVVK NAYG G  ++A     AG
Sbjct: 1   MTLQNFYRDTWAEINLDAIFENAANMKKHLPPEITLFAVVKANAYGHGDVEVAETAIQAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P   +I    ++   +     L      +
Sbjct: 61  AGYLAVAFLDEALALRKKGITAPILVLGASRPEDAQIAARESITLTVFQAGWLEAAQSFL 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVN 175
             G      L+ D+G  R+G+  QE ++       K K   L  I +H A AD   +   
Sbjct: 121 E-GTVLTIHLKCDSGMGRIGIRKQEEMNEIERFLQKTKCFVLEGIFTHFATADQLDTEYF 179

Query: 176 SVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----S 229
           S QL RF  +++  K        A+S+ +L  PN  F   R GISLYG +  +       
Sbjct: 180 SKQLARFEEMLTWLKEKPKYVHAANSAALLRFPNAVFNSVRMGISLYGLSPSMEMKEVLP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++   + + +++ ++    G+ VSYG       D+ I    IGYADG+   L G    
Sbjct: 240 FALRPAFSLKTKLVHVKNISKGQSVSYGATYTAEEDTWIGTLPIGYADGWIRMLQGQ--- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                    +  ++G   P++G+I MD  M  ++    +  G  + + G +    I +DD
Sbjct: 297 ---------EVLLEGGRSPLVGRICMDQCMVKLSREFPV--GTEVTLIGKNGTECITVDD 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY++   I +R  + Y
Sbjct: 346 IAEKLNTINYEVTCMISSRVPRMY 369


>gi|322834774|ref|YP_004214801.1| alanine racemase [Rahnella sp. Y9602]
 gi|321169975|gb|ADW75674.1| alanine racemase [Rahnella sp. Y9602]
          Length = 359

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/366 (29%), Positives = 171/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  L+  +R  AVVK NAYG G  +   +L +     + V+ + E 
Sbjct: 6   AVIDRRALRHNLQRVRHLAPQSRLVAVVKANAYGHGLLETVHSLQD--ADYYGVSRLSEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     E  ++ +  L   + S+ QL                L+
Sbjct: 64  LMLRKAGVVKPILLLEGFFSASELPLLIEHQLDTAVHSLEQLDALESA-DLARPLNVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+   +A  F       K + Q   ++SH   AD+P S     QL  F    
Sbjct: 123 IDTGMHRLGVHPAQADAFYQRLSACKNVVQPVNMMSHFCRADEPESDATPKQLNCFNEFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEARII 243
               G + S+A+S GILL P  H  L RPGI LYG +           +Q V+T  + +I
Sbjct: 183 EGKPG-QKSIAASGGILLWPESHMNLVRPGIILYGVSPMETGTASDFGLQPVMTLTSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG      RD+ + V A+GY DGYP +              G    + 
Sbjct: 242 AVREHAAGEPVGYGSTWVSNRDTRLGVVAMGYGDGYPRSAPN-----------GTPVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP+ G+++MDM   D+    + +VGD +  +G  + ++ +A A+G + Y+L+ ++  
Sbjct: 291 GREVPVAGRVSMDMITVDLGPDATDKVGDEVIFWGGKLPVERIAQATGISAYELITQLSE 350

Query: 364 RYAKFY 369
           R A+ Y
Sbjct: 351 RVARVY 356


>gi|296100680|ref|YP_003610826.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055139|gb|ADF59877.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 359

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 173/367 (47%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I D +L   + +  QL+   +           ++
Sbjct: 64  LRLRAGGITQPILLLEGFFEAADLPTIADQHLHTAVHNEEQLSAL-ETAELSEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A  F       K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEHAQAFYQRLCQCKNVRQPVNIVSHFARADEPDCGATEQQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G   S+A+S GILL P  HF   RPGI LYG +   N+        Q V++  +++
Sbjct: 183 EGKPG-MRSIAASGGILLWPQSHFDWARPGIILYGVSPLENRPWGPDFGFQPVMSLVSKL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWTSARDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  V I+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVKIVGRVAMDMICVDLGPDAQDKAGDDVVMWGDGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|200386495|ref|ZP_03213107.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199603593|gb|EDZ02138.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 359

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 170/367 (46%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I    L   + +  QL     +          ++
Sbjct: 64  LRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAV-ELAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   I+SH A AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLTRCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +
Sbjct: 183 RGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|146309923|ref|YP_001174997.1| alanine racemase [Enterobacter sp. 638]
 gi|145316799|gb|ABP58946.1| alanine racemase [Enterobacter sp. 638]
          Length = 359

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 171/367 (46%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I D +L   I +  QL    +           ++
Sbjct: 64  LRLRAGGITQPILLLEGFFEATDLTTIADQHLHTAIHNEEQLLAL-ETAELSEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       K + Q   I+SH A AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSQCKNVHQPVNIVSHFARADEPECGATEQQLDIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAEARI 242
               G   S+A+S GILL P  HF   RPGI LYG +   NK        Q V++  + +
Sbjct: 183 EGKPG-MRSIAASGGILLWPQSHFDWARPGIILYGVSPLENKPWGPDFGLQPVMSLVSNL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG      D+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSESDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  V I+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVKIVGRVAMDMICVDLGPDAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|16762928|ref|NP_458545.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16767497|ref|NP_463112.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29144415|ref|NP_807757.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56416047|ref|YP_153122.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161617376|ref|YP_001591341.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167552528|ref|ZP_02346281.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167991437|ref|ZP_02572536.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168236939|ref|ZP_02661997.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168243645|ref|ZP_02668577.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168821308|ref|ZP_02833308.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194448214|ref|YP_002048237.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194735891|ref|YP_002117180.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262039|ref|ZP_03162113.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364974|ref|YP_002144611.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198244007|ref|YP_002218141.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|204927044|ref|ZP_03218246.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205355019|ref|YP_002228820.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859401|ref|YP_002246052.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213051931|ref|ZP_03344809.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213424514|ref|ZP_03357311.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213647520|ref|ZP_03377573.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|238913004|ref|ZP_04656841.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289824655|ref|ZP_06544182.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|60391222|sp|P0A1A3|ALR1_SALTY RecName: Full=Alanine racemase, biosynthetic
 gi|60391223|sp|P0A1A4|ALR1_SALTI RecName: Full=Alanine racemase, biosynthetic
 gi|25291655|pir||AF1016 alanine racemase (EC 5.1.1.1) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|153865|gb|AAA27022.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16422805|gb|AAL23071.1| biosynthetic alanine racemase 1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16505235|emb|CAD09231.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140053|gb|AAO71617.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56130304|gb|AAV79810.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161366740|gb|ABX70508.1| hypothetical protein SPAB_05231 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406518|gb|ACF66737.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194711393|gb|ACF90614.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197096451|emb|CAR62057.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197240294|gb|EDY22914.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197290054|gb|EDY29413.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197938523|gb|ACH75856.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|204323709|gb|EDZ08904.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205274800|emb|CAR39859.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205322805|gb|EDZ10644.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330206|gb|EDZ16970.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205337286|gb|EDZ24050.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205342080|gb|EDZ28844.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206711204|emb|CAR35580.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261249345|emb|CBG27208.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996559|gb|ACY91444.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160739|emb|CBW20270.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915352|dbj|BAJ39326.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320088655|emb|CBY98413.1| alanine racemase 1 [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223115|gb|EFX48185.1| Alanine racemase, biosynthetic [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615403|gb|EFY12323.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618463|gb|EFY15352.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622125|gb|EFY18975.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627196|gb|EFY23988.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631156|gb|EFY27920.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637626|gb|EFY34327.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642511|gb|EFY39111.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322643608|gb|EFY40163.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648343|gb|EFY44802.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654652|gb|EFY50972.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659612|gb|EFY55855.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662179|gb|EFY58395.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666075|gb|EFY62253.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672495|gb|EFY68606.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675924|gb|EFY71995.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680409|gb|EFY76447.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684697|gb|EFY80701.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132586|gb|ADX20016.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195961|gb|EFZ81127.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197109|gb|EFZ82250.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201773|gb|EFZ86837.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206287|gb|EFZ91249.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213298|gb|EFZ98100.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215668|gb|EGA00412.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222091|gb|EGA06477.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226502|gb|EGA10708.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229127|gb|EGA13256.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236263|gb|EGA20339.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237617|gb|EGA21678.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241717|gb|EGA25746.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248136|gb|EGA32073.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323254534|gb|EGA38345.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258406|gb|EGA42083.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323259686|gb|EGA43320.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265959|gb|EGA49455.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270401|gb|EGA53849.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625939|gb|EGE32284.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326630171|gb|EGE36514.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332991063|gb|AEF10046.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 359

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 170/367 (46%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I    L   + +  QL     +          ++
Sbjct: 64  LRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAV-ELAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   I+SH A AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +
Sbjct: 183 QGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|193063073|ref|ZP_03044165.1| alanine racemase [Escherichia coli E22]
 gi|194426899|ref|ZP_03059452.1| alanine racemase [Escherichia coli B171]
 gi|260846847|ref|YP_003224625.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O103:H2 str. 12009]
 gi|192931332|gb|EDV83934.1| alanine racemase [Escherichia coli E22]
 gi|194415235|gb|EDX31504.1| alanine racemase [Escherichia coli B171]
 gi|195183272|dbj|BAG66813.1| alanine racemase 1 [Escherichia coli O111:H-]
 gi|257761994|dbj|BAI33491.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli
           O103:H2 str. 12009]
 gi|323162193|gb|EFZ48056.1| alanine racemase [Escherichia coli E128010]
          Length = 359

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGIIKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|269103593|ref|ZP_06156290.1| alanine racemase biosynthetic [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163491|gb|EEZ41987.1| alanine racemase biosynthetic [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 359

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 175/369 (47%), Gaps = 22/369 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL +N   +   + N++  AVVK NAYG G   +A +L    V  +    +EE 
Sbjct: 6   AHIDTEALTHNLRQLRTQAPNSKILAVVKANAYGHGLLHVAKSLPT--VDAYGAARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G + P    ++   N+  V+ S+ QL    +    G      L+
Sbjct: 64  LTLRAGGIVKPILLLEGFYSPSDLPVLVTNNIHTVVHSIEQLEALEQAKLDG-PVVVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++  +F         + +    ISH  CADD  S V + QLE F  L 
Sbjct: 123 IDTGMHRLGVRPEQIDEFITRLHACHNVAKPLRYISHFGCADDLQSDVTNQQLETFLALT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-----PMQTVVTAEAR 241
               G E SLA+S+G+L  P+ H +  RPGI +YG +             ++ V+T  + 
Sbjct: 183 EGCTG-ERSLAASAGVLAWPDSHLEWIRPGIVMYGISPFAEPEMSASAYNLKPVMTLTSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    GE V YGG     RD+ + V AIGY DGYP +              G    
Sbjct: 242 LIAVRDVKKGEQVGYGGNWTSERDTKVGVIAIGYGDGYPRSAPN-----------GTPIL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VP+ G+++MDM   D+      +VGD   ++G  +  + VA   GT  Y+L+ ++
Sbjct: 291 VNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDEAILWGNGLPAEVVAEHIGTIAYELVTKL 350

Query: 362 GTRYAKFYT 370
            +R A  YT
Sbjct: 351 TSRVAMTYT 359


>gi|301330573|ref|ZP_07223182.1| alanine racemase [Escherichia coli MS 78-1]
 gi|300843491|gb|EFK71251.1| alanine racemase [Escherichia coli MS 78-1]
          Length = 359

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELIARLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|260582214|ref|ZP_05850008.1| alanine racemase [Haemophilus influenzae NT127]
 gi|260094846|gb|EEW78740.1| alanine racemase [Haemophilus influenzae NT127]
          Length = 360

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 175/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRA-NLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240
            ++    +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSVTKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V AIGY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAIGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|330828532|ref|YP_004391484.1| alanine racemase [Aeromonas veronii B565]
 gi|328803668|gb|AEB48867.1| Alanine racemase [Aeromonas veronii B565]
          Length = 357

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 172/367 (46%), Gaps = 20/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I+  AL++N   +   +   +  AVVK NAYG G   +A  L +     + V  +EE 
Sbjct: 6   AQINTAALRHNLAVVKRHAPACKIIAVVKANAYGHGLLPVARTLVD--ADAYAVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     +  ++   NL   + +  QL    ++          L+
Sbjct: 64  LMLRSCAVVKPIVLLEGFFSADDLPVLAANNLQTAVHTWEQLEALEQV-ELPAPVVAWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+   E   F       K + Q   I++H + +D+        Q++ F  L 
Sbjct: 123 LDTGMHRLGVRADEMPAFIERLGKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSKLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARII 243
           +   G E ++A+S+GIL  P+ H    RPG+ LYG +   N     + +Q V+T + ++I
Sbjct: 183 APLAG-ERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTIAADYDLQPVMTLKTQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YG      RD+ + V AIGY DGYP                G    I 
Sbjct: 242 AVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPN-----------GTSVLIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G +VP++G+++MDM+  D+    + + GD   ++G  + ++ VA   GT  Y+L+ ++ +
Sbjct: 291 GRIVPLVGRVSMDMSTVDLGPGATDKPGDEAVLWGEGLPVERVADEIGTIPYELITKLTS 350

Query: 364 RYAKFYT 370
           R    Y 
Sbjct: 351 RVFMEYV 357


>gi|196039765|ref|ZP_03107069.1| alanine racemase [Bacillus cereus NVH0597-99]
 gi|196029468|gb|EDX68071.1| alanine racemase [Bacillus cereus NVH0597-99]
          Length = 391

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 71  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|301053620|ref|YP_003791831.1| alanine racemase [Bacillus anthracis CI]
 gi|300375789|gb|ADK04693.1| alanine racemase [Bacillus cereus biovar anthracis str. CI]
          Length = 408

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|228933402|ref|ZP_04096256.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229138804|ref|ZP_04267385.1| Alanine racemase [Bacillus cereus BDRD-ST26]
 gi|228644720|gb|EEL00971.1| Alanine racemase [Bacillus cereus BDRD-ST26]
 gi|228826266|gb|EEM72045.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 408

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVASAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|194015919|ref|ZP_03054534.1| alanine racemase [Bacillus pumilus ATCC 7061]
 gi|194012274|gb|EDW21841.1| alanine racemase [Bacillus pumilus ATCC 7061]
          Length = 393

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/386 (26%), Positives = 176/386 (45%), Gaps = 31/386 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +N F R    +I+L+A+K+N   M    G + +  AVVK NAYG G  ++A A   AG
Sbjct: 1   MDTNAFYRDTWAEINLSAIKHNVSHMKDHIGQSVQLMAVVKANAYGHGDIEVARAALKAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E V LR    +A I VL  + P   K+    N+I    S+  L   +K++
Sbjct: 61  ADVLAVAFLDEAVSLRNKGIKAPILVLGAVPPEYVKVAVRYNVIMTAYSIDWLRDVTKMV 120

Query: 117 SC--GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSH 173
               G    + L++D+G NRLG+   E ++      ++    QL  + +H A AD+    
Sbjct: 121 KGQMGQPIRFHLKIDSGMNRLGVKTIEQVNEVKKLVSEHSYLQLEGVFTHFATADEKDEA 180

Query: 174 VNSVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----N 227
               Q++ F+TL+   H   +    A+S+  L   +  F + R GIS+YG +        
Sbjct: 181 YFDRQVDTFQTLLEPLHTDKLLVHCANSAAGLRFKDVLFNMVRFGISMYGLSPSEEIKDE 240

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++  ++   ++  ++    GE VSYG      +D+ I    +GYADG+   L+   
Sbjct: 241 LPFKLEEAMSLHTKLAHVKHIQEGESVSYGATYTANQDTWIGTVPVGYADGWIRKLA--- 297

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      +  + G    I G++ MD  M ++ D L +  G+ + + G      + +
Sbjct: 298 ---------ATEVLVGGKRRKIAGRVCMDQFMIELKDKLPV--GEPVVLIGKQGEDMVSV 346

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           D++A    T NY++   IG R  + Y
Sbjct: 347 DEIAKRLETINYEVTCSIGHRVPRVY 372


>gi|206581084|ref|YP_002241006.1| alanine racemase [Klebsiella pneumoniae 342]
 gi|290512391|ref|ZP_06551758.1| alanine racemase [Klebsiella sp. 1_1_55]
 gi|206570142|gb|ACI11918.1| alanine racemase [Klebsiella pneumoniae 342]
 gi|289775386|gb|EFD83387.1| alanine racemase [Klebsiella sp. 1_1_55]
          Length = 359

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 174/367 (47%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRDLAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G    ++  +I    L   + S  QL    +           ++
Sbjct: 64  LRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQA-DLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +        K    Q V+T  + +
Sbjct: 183 EGKPGL-RSIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGKDFGCQPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|242280765|ref|YP_002992894.1| alanine racemase [Desulfovibrio salexigens DSM 2638]
 gi|242123659|gb|ACS81355.1| alanine racemase [Desulfovibrio salexigens DSM 2638]
          Length = 382

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 29/386 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            +   +  ++DL+A+ +N+  +  L    ++  AVVK +AYG G  K+A  L  AG   F
Sbjct: 5   KTFAPIWAEVDLSAISHNFSEVQRLVNKQSKIMAVVKADAYGHGLTKVADCLNKAGADYF 64

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI-SSVPQLTFYSKLMSCG 119
            V  ++E V LR +  +  I +L    P     +    +I  + SS        KL    
Sbjct: 65  AVARLDEAVALRNHGIEKPILILGYTPPEAATELLKHKVIQTVFSSEYAKDLNEKLNQTN 124

Query: 120 VSHPYALQVDTGFNRLGLSLQ----EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            +    +++DTG  RLGL  +      L+           +   + +H A +D+      
Sbjct: 125 KTLKVHIKIDTGMGRLGLVDEFNDGAVLESISTINRLPNLETEGVYTHFAASDEADKTSA 184

Query: 176 SVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK---IN 227
             QL++F+ +++    +GI       A+S+ I+  P  +F + RPGI LYG         
Sbjct: 185 LEQLKQFKNILAGIERRGISIPLKHAANSAAIIDLPESYFDMVRPGIMLYGLYPSNGVHQ 244

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           ++  ++  +  +ARI   ++  AG  +SYG        + +A   +GYADGY   LS   
Sbjct: 245 QNAELRPAMQIKARIAQTKEVPAGFRISYGHTYTTPNATKLATIPLGYADGYRRQLS--- 301

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKL 343
                     GK  + G    I+G++ MD ++ D+    ++E GD + I G     +I  
Sbjct: 302 --------SAGKVLVHGQHASIVGRVCMDQSVIDVGKIENVEAGDEVVIIGRQEQAEISA 353

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + +A   GT NY+++  +  R  + +
Sbjct: 354 ERMACELGTINYEIVSTLMARVPRIF 379


>gi|148826764|ref|YP_001291517.1| alanine racemase [Haemophilus influenzae PittGG]
 gi|148718006|gb|ABQ99133.1| alanine racemase [Haemophilus influenzae PittGG]
          Length = 360

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 174/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLEALKR-SNLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240
            +     +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTNTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|301156142|emb|CBW15613.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus
           parainfluenzae T3T1]
          Length = 360

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 179/370 (48%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK+N   +   + +++  AVVK NAYG G   ++ AL +  V  F V  
Sbjct: 4   KPATAKISSLALKHNLQVIKEKAPHSKIIAVVKANAYGHGVVFVSSALESM-VDCFAVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    ++  II   N+  V+ +  QL    + +       
Sbjct: 63  LEEALSLRSNGIIKPILLLEGFFDEKDLPIIAVNNIETVVHNREQLEALKRAV-VPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG+SL E   F          Q     +SH + AD+  S    VQL+RF
Sbjct: 122 VWLKIDTGMHRLGVSLDEVDYFYQELKKLPQIQPHLGFVSHFSRADELDSDYTQVQLDRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240
                + +G E ++A+S GIL  P  H    RPGI +YG +    +     +  V+   +
Sbjct: 182 LQATKNKEG-ERTIAASGGILFWPEAHLDCIRPGIIMYGISPTDTVGAEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ +R+   GE V YGG     +D+ I V AIGY DGYP             V  G   
Sbjct: 241 SLLAVREHKKGEPVGYGGIWTSPKDTKIGVVAIGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+ +    +VGD + ++G ++ ++ VA  SG  +Y+L+ +
Sbjct: 290 YLNGRIVPIVGRVSMDMLTVDLGEDSQDKVGDEVILWGKELPIETVAKYSGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|196036671|ref|ZP_03104064.1| alanine racemase [Bacillus cereus W]
 gi|195990740|gb|EDX54715.1| alanine racemase [Bacillus cereus W]
          Length = 391

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 71  EAIELREAGINVPILILGYTSVAATEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG       +H +   Q  ++
Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|319897248|ref|YP_004135443.1| alanine racemase 1, plp-binding, biosynthetic [Haemophilus
           influenzae F3031]
 gi|317432752|emb|CBY81117.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus
           influenzae F3031]
          Length = 360

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 178/370 (48%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L  + V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  ++ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETIVHNREQLEALKRA-NLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTKLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240
            +     +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG    +RD+ I V A+GY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSSRDTKIGVVAMGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D++     +VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLSTDSQDQVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|239618030|ref|YP_002941352.1| alanine racemase [Kosmotoga olearia TBF 19.5.1]
 gi|239506861|gb|ACR80348.1| alanine racemase [Kosmotoga olearia TBF 19.5.1]
          Length = 372

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/379 (26%), Positives = 158/379 (41%), Gaps = 24/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    L+IDL A K N           +  AVVK NAYG G   I+ A   +G+    V 
Sbjct: 3   SRRTYLEIDLKAYKQNLEFFQRKVSPTKVMAVVKSNAYGHGAVGISKAAVESGIDMLAVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122
            +EEG++LR +     I V     P    +  + NL     S+ Q+    S L +     
Sbjct: 63  FLEEGIELRNHGINVPILVFNYFDPEYSSLALENNLTITAYSIEQMKGIKSVLGNQIRKL 122

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              + VDTG  R+G S  E          +    +  I SH A AD+     +  Q + F
Sbjct: 123 KVHVNVDTGMKRIGPSANECTSLIEYLL-ENGFSIEGIYSHFAVADEAIEQFSIEQRKAF 181

Query: 183 RTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVV 236
            + +     KGI+     L +S+G L      +   R GI+ YG     +   P  + V+
Sbjct: 182 ESAVKTLESKGIKIPVKHLCNSAGSLRFNREEYNYIRLGIASYGLQPSGDFVIPELKPVL 241

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T ++ +  ++    G+ VSYG      R  +++   +GY DGY   LS            
Sbjct: 242 TWKSAVSYVKTLKPGDSVSYGRTFIADRKMVVSTVPVGYGDGYSRGLSNR---------- 291

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD----IKLDDVALASG 351
            G+  I G    ILG++ MD  + D+T      ++GD + + G      I ++++A    
Sbjct: 292 -GEVLIGGKRCKILGRVCMDQFVVDVTHLHKKPKIGDEVVLIGSQGEERITVEEIADLLN 350

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T NY++   I  R  + YT
Sbjct: 351 TINYEITCTITARVPRLYT 369


>gi|229196342|ref|ZP_04323090.1| Alanine racemase [Bacillus cereus m1293]
 gi|228587196|gb|EEK45266.1| Alanine racemase [Bacillus cereus m1293]
          Length = 408

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVASAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVIGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|153956178|ref|YP_001396943.1| alanine racemase [Clostridium kluyveri DSM 555]
 gi|189027531|sp|A5N376|ALR_CLOK5 RecName: Full=Alanine racemase
 gi|146349036|gb|EDK35572.1| Alr [Clostridium kluyveri DSM 555]
          Length = 391

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 169/379 (44%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I+L  L  N   + +  GN     V+K +AYG G  +IA  L   GV    V  
Sbjct: 6   RPVWEEINLDNLVYNIGQIKSKIGNKELIGVIKADAYGHGAVEIAKVLLENGVSRLAVAI 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHP 123
           ++E ++LR    +  I VL  I       I + ++ P++ S    +  SKL         
Sbjct: 66  LDEAIELRKNKIKVPIMVLGIIPHAFLDEIMNYDIEPIVPSYSYASKLSKLAESKDKKIK 125

Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G S+   +++           ++  + SH + AD+     +  Q +++
Sbjct: 126 VHIALDTGMGRIGFSIDPNSVEEIGKISKLPNIEIQSLFSHFSTADETDKAYSCEQFKKY 185

Query: 183 RTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
           + L         K    ++++S+ I+  P+ +  L RPGI +YG              + 
Sbjct: 186 KLLYEELVKKNVKINMRTISNSAAIMELPDTYCDLVRPGIIMYGYYPSTEVDKNNLSIKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           ++T +A ++ ++   +G  + YG + K  R S+IA   +GYADGY   L G         
Sbjct: 246 IMTLKANVVYVKVLESGSYIGYGRKFKCNRKSVIATLPLGYADGYTRRLFG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
               K  I G   P++G I MD  M D+TD   + +GD + + G         DD+A  +
Sbjct: 297 --KAKVIINGKFAPVVGNICMDQCMVDVTDVGEVNIGDEVVLIGEKDGLKFNADDIAEIT 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y++L  IG R  K Y
Sbjct: 355 GTISYEVLCMIGRRVPKLY 373


>gi|68249839|ref|YP_248951.1| alanine racemase [Haemophilus influenzae 86-028NP]
 gi|148826096|ref|YP_001290849.1| alanine racemase [Haemophilus influenzae PittEE]
 gi|229847109|ref|ZP_04467214.1| alanine racemase [Haemophilus influenzae 7P49H1]
 gi|68058038|gb|AAX88291.1| alanine racemase [Haemophilus influenzae 86-028NP]
 gi|148716256|gb|ABQ98466.1| alanine racemase [Haemophilus influenzae PittEE]
 gi|229809938|gb|EEP45659.1| alanine racemase [Haemophilus influenzae 7P49H1]
          Length = 360

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 174/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLEALKR-SNLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240
            +     +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|281181122|dbj|BAI57452.1| alanine racemase [Escherichia coli SE15]
          Length = 359

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  +        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-NLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + G  + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGAPVILWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|328956604|ref|YP_004373990.1| alanine racemase [Carnobacterium sp. 17-4]
 gi|328672928|gb|AEB28974.1| alanine racemase [Carnobacterium sp. 17-4]
          Length = 390

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/382 (27%), Positives = 159/382 (41%), Gaps = 26/382 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           S+     +I L  ++NN  +    LS N    AVVK + YG G ++IA     AG     
Sbjct: 5   SSRETWAEISLDNVENNIKNFKKILSSNTALMAVVKADGYGHGAKEIAETAIEAGATYLA 64

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCG 119
           V  ++E V LR       I VL       E I    D  L   + S   +    +L    
Sbjct: 65  VAFLDEAVVLRKAGFSIPILVLGYTSLDTETIEKAIDYGLTLTVYSKEAVEIIQQLADQK 124

Query: 120 VSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L++D+G NR+G+   E       S       L  I +H A AD   S     Q
Sbjct: 125 KKVCRIHLKIDSGMNRIGVRTAEEALQIVASITSDYLLLEGIFTHFADADAIESTFVHEQ 184

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHP 231
            + F  + S  +            +++  +  P  H  + R GI LYG   +  +     
Sbjct: 185 FDHFMHITSKIQEAGYTISLKHCCNTAATIAFPEMHLDMVRIGIGLYGLYPEQHLQDHIE 244

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T + + ILI+K  AG+ VSYG     T DS+IA   +GYADG+   LS       
Sbjct: 245 LKPAMTFKTKPILIKKVPAGQSVSYGRTYTTTTDSIIATIPVGYADGFSRALSN------ 298

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 G   I GY  PI+G++ MD TM D+T+   +     I +FG      I + +VA
Sbjct: 299 -----NGNVTIDGYKAPIVGRVCMDQTMVDLTEIDPVHFDKEIVLFGDSKDSCISISEVA 353

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++   +G R  + Y
Sbjct: 354 TQMNTIHYEVACLVGKRVPRVY 375


>gi|262045542|ref|ZP_06018563.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259037101|gb|EEW38351.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 359

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/367 (29%), Positives = 173/367 (47%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G    ++  +I    L   + S  QL    +           ++
Sbjct: 64  LRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQA-DLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +             Q V+T  + +
Sbjct: 183 EGKPGL-RSIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGNDFGCQPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRA-----------TPSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  +PI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREMPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|168263431|ref|ZP_02685404.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|194444595|ref|YP_002043497.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194403258|gb|ACF63480.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|205347865|gb|EDZ34496.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 359

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 170/367 (46%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I    L   + +  QL     +          ++
Sbjct: 64  LRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAV-ELAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   I+SH A AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +
Sbjct: 183 RGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|213970669|ref|ZP_03398794.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato T1]
 gi|301382556|ref|ZP_07230974.1| alanine racemase [Pseudomonas syringae pv. tomato Max13]
 gi|302063077|ref|ZP_07254618.1| alanine racemase [Pseudomonas syringae pv. tomato K40]
 gi|302133576|ref|ZP_07259566.1| alanine racemase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924503|gb|EEB58073.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato T1]
          Length = 357

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 170/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  R  AV+K +AYG G   +A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARDSSGG-RALAVIKADAYGHGAVHVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E  +I + +L  V+ ++ QL    +    G    
Sbjct: 60  IEEALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHAIWQLEAIEQAQP-GKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH +CAD+ +S  +  Q+  F 
Sbjct: 119 VWLKLDTGMHRVGLHPSEYRAAYQRLLATGKVPRVVLMSHFSCADELNSACSDQQVAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    E SL +S  ++  PN     +R GI LYG T        +  +Q V+T E+
Sbjct: 179 AARQGLVA-ETSLKNSPAVMGWPNIPSDWSRTGIMLYGATPFDQTQPLAERLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KVISVRELPAGEAVGYGATFVSERPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+TD     +G  +Q++G  +   +VA  +GT  Y +   
Sbjct: 287 LIDGQRSRLLGRVSMDMLCVDLTDVPQAGLGSRVQLWGKGVLASEVATQAGTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|228985202|ref|ZP_04145367.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228774497|gb|EEM22898.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 408

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANSLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|62182696|ref|YP_219113.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224586012|ref|YP_002639811.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62130329|gb|AAX68032.1| alanine racemase 1, biosynthetic [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224470540|gb|ACN48370.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322717195|gb|EFZ08766.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 359

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 170/367 (46%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I    L   + +  QL     +          ++
Sbjct: 64  LRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAV-ELAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   I+SH A AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFSAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +
Sbjct: 183 QGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|168231244|ref|ZP_02656302.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168466930|ref|ZP_02700778.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194472435|ref|ZP_03078419.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197249755|ref|YP_002149160.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|194458799|gb|EDX47638.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195630651|gb|EDX49263.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197213458|gb|ACH50855.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|205334185|gb|EDZ20949.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 359

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 170/367 (46%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I    L   + +  QL     +          ++
Sbjct: 64  LRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAV-ELAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   I+SH A AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +
Sbjct: 183 QGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|47566849|ref|ZP_00237567.1| alanine racemase [Bacillus cereus G9241]
 gi|47556478|gb|EAL14811.1| alanine racemase [Bacillus cereus G9241]
          Length = 391

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 71  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEGNIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|312963835|ref|ZP_07778306.1| alanine racemase [Pseudomonas fluorescens WH6]
 gi|311281870|gb|EFQ60480.1| alanine racemase [Pseudomonas fluorescens WH6]
          Length = 357

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 174/369 (47%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     ++G A+  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARDVTG-AKALAVIKADAYGHGAVRVAQAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +   V+ S+ QL    +  +      
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELALIIEHDFWCVVHSLWQLEAIEQA-ALSKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++  +              +++SH A AD+     ++ Q+  F 
Sbjct: 119 IWLKLDSGMHRVGLHPKDYQEAYQRLLASGKVAKIVLMSHFARADELDCTSSNEQVAVFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    E SL +S  +L  P+      RPGI LYG T        +  +Q V+T E+
Sbjct: 179 AARQGLAA-EVSLRNSPAVLGWPSVSSDWVRPGIMLYGATPFGEDQALAARLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG +    +   I V A+GYADGYP                G   
Sbjct: 238 KVICVRELPAGEPVGYGARFVTPKPMRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    +LG+++MDM   D+TD     +G  ++++G +I   DVA+A+ T  Y +   
Sbjct: 287 LVAGQRSQLLGRVSMDMLCVDLTDVPQAGLGSTVELWGKNILASDVAVAADTIPYQIFCN 346

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 347 L-RRVPRLY 354


>gi|149183253|ref|ZP_01861697.1| alanine racemase [Bacillus sp. SG-1]
 gi|148849049|gb|EDL63255.1| alanine racemase [Bacillus sp. SG-1]
          Length = 394

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 155/375 (41%), Gaps = 27/375 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            ++IDL  L  N H++           AVVK NAYG G  + A    N G     V  ++
Sbjct: 12  WVEIDLDNLYKNVHNIKQHLPEGVTMFAVVKANAYGHGDVQTAHTALNGGAGGLAVAFLD 71

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125
           E + LR    +A I VL         +    ++   +     L    + L          
Sbjct: 72  EAISLRENGIEAPILVLGATRAEDAYLAMSHDISLTVFDYAWLESAREYLEKEDGKLNLH 131

Query: 126 LQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           ++ DTG  R+G+    +          +   QL  + +H A AD+  +     QLE F  
Sbjct: 132 IKCDTGMGRIGVRNSADLQKVEKFIRQESKFQLEGVFTHFATADELDTEYFERQLEVFER 191

Query: 185 LISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTA 238
           ++S    +      ++S+  L  P  HF   R GI++YG +  +        P++ V + 
Sbjct: 192 MLSSLTERPKYIHSSNSAATLSHPKSHFNAVRAGIAMYGLSPSVEMKAVLPFPLEQVFSL 251

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +RI+ +++  AGE VSYG   +  ++  I    IGYADG+   L G             
Sbjct: 252 HSRIVQVKELRAGEKVSYGATYETKKNEWIGTLPIGYADGWLRKLQGQ------------ 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +  + G   PI+G+I MD  M  + +   ++ G  + + G      I +D++A    T N
Sbjct: 300 EVLVDGKRAPIVGRICMDQCMISLPE--EVQPGTKVTLIGRQDGDFISMDEIAAKLDTIN 357

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   I  R  + Y
Sbjct: 358 YEIPCIISNRVPRIY 372


>gi|114046202|ref|YP_736752.1| alanine racemase [Shewanella sp. MR-7]
 gi|123131743|sp|Q0HYW0|ALR_SHESR RecName: Full=Alanine racemase
 gi|113887644|gb|ABI41695.1| alanine racemase [Shewanella sp. MR-7]
          Length = 358

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/367 (27%), Positives = 178/367 (48%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I  +AL+NN   +   +  ++  AVVK N YG G   +A  L+      F +  
Sbjct: 3   PFPRAEISSSALQNNLAVLRQQASRSQVMAVVKANGYGHGLLNVANCLHT--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +AR+ +L G     +  ++   ++  V+    Q+    +  +      
Sbjct: 61  LEEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQA-TLSKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G +RLG++ ++             + +   +++H ACAD+P ++   VQ++ F
Sbjct: 120 VWLKVDSGMHRLGVTPEQFAQVYARLTACDNVAKPIHLMTHFACADEPENNYTQVQMQTF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAE 239
             L +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +   
Sbjct: 180 NQLTADLPGF-RTLANSAGALYWPKSQGDWIRPGIALYGVSPVTGDCGANHGLIPAMNLV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+I +R   AG+ V YG      +D+ + V AIGY DGYP            +   G  
Sbjct: 239 SRLIAVRDHKAGQPVGYGCYWTAKQDTRLGVVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G  VPI+G+++MDM   D+    + +VGD   ++G  + +++VA   GT  Y+L+ 
Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGADAADQVGDEALLWGAALPVEEVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|52143353|ref|YP_083477.1| alanine racemase [Bacillus cereus E33L]
 gi|51976822|gb|AAU18372.1| alanine racemase [Bacillus cereus E33L]
          Length = 391

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 163/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++           
Sbjct: 71  EAIELREAGINVPILILGYTSVAVAEEAIQYDVMMTVYRSEDLQGINEIAKRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|320331880|gb|EFW87818.1| alanine racemase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330873077|gb|EGH07226.1| alanine racemase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 357

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 167/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + N   V+ S  QL    +         
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELALIVEHNFWMVVHSTWQLEAIEQAQ-LAKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH A AD+ +S  +  Q   F 
Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
           +        E SL +S  +L  P+     +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 SFRKGLAA-EISLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|228945715|ref|ZP_04108062.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228813936|gb|EEM60210.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 408

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAATEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG       +H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|58257636|dbj|BAD88779.1| alanine racemase [synthetic construct]
          Length = 359

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 173/371 (46%), Gaps = 21/371 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +   + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  
Sbjct: 2   QVATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVAR 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR       + +L G    ++   I   +    + +  QL    +  S      
Sbjct: 60  LEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEGQLAALEEA-SLDEPVT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F
Sbjct: 119 VWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTA 238
            T      G + S+A+S GILL P  HF   RPGI LYG +             Q V++ 
Sbjct: 179 NTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I +R+  AGE V YGG     RD+ + V A+GY DGYP                G 
Sbjct: 238 TSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L+
Sbjct: 287 PVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELI 346

Query: 359 VRIGTRYAKFY 369
            R+ +R A  Y
Sbjct: 347 TRLTSRVAMKY 357


>gi|294139221|ref|YP_003555199.1| alanine racemase [Shewanella violacea DSS12]
 gi|293325690|dbj|BAJ00421.1| alanine racemase, biosynthetic [Shewanella violacea DSS12]
          Length = 358

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 178/367 (48%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I   ALKNN   +  ++  ++  AVVK N YG G   +A  + +     F +  
Sbjct: 3   PFPRAEISCKALKNNLARLRQIAPASKIMAVVKANGYGHGLLNVAKCIED--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR     +++ +L G   P     +   ++  V+ +  QL    +  S      
Sbjct: 61  LEEAIALRDGGVTSKLILLEGFFRPVDLTTLVMKDIETVVHNEKQLEMLEQA-SLSKPAN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG + ++            ++ +   I+SH ACAD+P +     QL  F
Sbjct: 120 VWLKLDTGMHRLGFTPEQFEHVYARLLDCPQVAKPIKIMSHFACADEPDNPYTREQLNIF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
             L  +  G E +LA+S+G L  P+ H    RPGISLYG +     + K+H +Q  +   
Sbjct: 180 NRLAKNLPG-ETTLANSAGTLYWPDSHKDWVRPGISLYGVSPVVGDLGKNHGLQPAMELI 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I IR+  AG+   YG   +   ++ + V AIGY DGYP            +   G  
Sbjct: 239 SQLIAIREHKAGDPAGYGCYWRAKEETKLGVVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G +VPI+G+++MDM   D+    +  +GD   ++G  + ++ VA   GT  Y+L+ 
Sbjct: 288 VWVNGRLVPIVGRVSMDMLTVDLGLDSTDSIGDEAIMWGSALPVEVVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|292669625|ref|ZP_06603051.1| alanine racemase [Selenomonas noxia ATCC 43541]
 gi|292648834|gb|EFF66806.1| alanine racemase [Selenomonas noxia ATCC 43541]
          Length = 368

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/376 (27%), Positives = 167/376 (44%), Gaps = 22/376 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++IDL A+ +N+  +     + A+  AVVK +AYG G   +A     AG +   V
Sbjct: 3   SRAAWVEIDLGAIAHNYGEIRKYIRHEAKLCAVVKADAYGHGAIAVARKAIAAGAEYLAV 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            ++ E +KLR       + +L    P     I D +L   +  +  +   S   +  G  
Sbjct: 63  ATISEALKLREAGFTTPLLILGLTKPESSFDIVDADLTQTVCRIDLVQALSAEATAQGKR 122

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               + VDTG  R+G+  ++A DF          +L  I SH A AD      +  Q++ 
Sbjct: 123 VKVHIAVDTGLGRIGVRPEDAADFAKKITALPGIELEGIFSHFALADIEDKSFSRHQIKL 182

Query: 182 FRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
           F+   +     GI      +A S+ IL  P+ HF + R GI  YG       +HP   + 
Sbjct: 183 FQIACTGVEAAGIHIPLRHIAESAAILDLPDVHFDMVRAGILQYGLWPSNEVAHPFYLRP 242

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   ARI+ I+    G  + YG      R++ IA  ++GYADGY               
Sbjct: 243 AMKFCARIVYIKTISPGTSIGYGRHFIAERETRIATISVGYADGYIRA------------ 290

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTT 353
           +  G   I+G    I G+I MD  M DITD    ++GD + +FG D +  DD+A  + T 
Sbjct: 291 YACGAVEIRGKRAAIAGRICMDQCMVDITDIPEAKIGDVVTLFGSDTLPADDLAEWANTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++L  +    ++ Y
Sbjct: 351 SYEVLCLVSKHVSRVY 366


>gi|145637837|ref|ZP_01793485.1| alanine racemase [Haemophilus influenzae PittHH]
 gi|145268980|gb|EDK08935.1| alanine racemase [Haemophilus influenzae PittHH]
          Length = 360

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 174/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRA-NLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240
            +     +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|237797761|ref|ZP_04586222.1| alanine racemase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020611|gb|EGI00668.1| alanine racemase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 357

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 167/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLARESSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E  +I + +L  V+ ++ QL    K         
Sbjct: 60  IEEALELRAAGLRAPILLLEGFFEADELALIVEHDLWTVVHTIWQLEAIEKAR-LDKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 ++++H ACAD+  S  ++ Q   F 
Sbjct: 119 VWLKLDTGMHRVGLYPSEYRAAHQRLLASGKVAKVVLMTHFACADELDSPSSAEQYAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEA 240
                    E SL +S  +L  P      +R GI LYG T        +  +Q V+T E+
Sbjct: 179 ATCQGLAA-ETSLKNSPAVLGWPKIRSDWSRTGIMLYGATPFGQSQPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG      R   + VAA+GYADGYP                G   
Sbjct: 238 KIISVREVPAGEAVGYGATFVSDRPLRVGVAAMGYADGYPRHA-----------PSGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+T      +G  ++++G  +   +VA  + T  Y +   
Sbjct: 287 HVDGQRSRLIGRVSMDMLCVDLTGLPQARLGSRVELWGKGVLASEVAAQAETIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|194432311|ref|ZP_03064599.1| alanine racemase [Shigella dysenteriae 1012]
 gi|194419514|gb|EDX35595.1| alanine racemase [Shigella dysenteriae 1012]
 gi|320179049|gb|EFW54008.1| Alanine racemase, biosynthetic [Shigella boydii ATCC 9905]
 gi|332084266|gb|EGI89469.1| alanine racemase [Shigella dysenteriae 155-74]
          Length = 359

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEKAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+        GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDNAGDSVILWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|170754426|ref|YP_001781290.1| alanine racemase [Clostridium botulinum B1 str. Okra]
 gi|169119638|gb|ACA43474.1| alanine racemase [Clostridium botulinum B1 str. Okra]
          Length = 389

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 163/384 (42%), Gaps = 27/384 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            ++  +  +++L  L  N  ++          AVVK N YG G   IA  L   G     
Sbjct: 3   RNHRPVWEEVNLDNLSYNMRNIKNKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLS 62

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V  + E ++LR       I +L    P   + I D N+ PV+ S       SK  S    
Sbjct: 63  VACLSEAIELREGGINCPINILGITPPTLFEDIIDYNIEPVVFSYDCANQLSKAASLKNR 122

Query: 122 H-PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG     E+L+      +    ++  + SH + +D+     +  Q 
Sbjct: 123 IVKTHIAVDTGMGRLGFDPTVESLEEIKRIQDLSNIKIEGLCSHFSSSDEKDKSYSEYQF 182

Query: 180 ERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231
           + F+           K     +++S+ I+  P+ +    R GI LYG    +    ++  
Sbjct: 183 KIFQNFRKKLIEMNMKIPIYHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVNKENLH 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T +A I+ I+   +G+ V Y  + K  R S IA+  +GY DGY   LS       
Sbjct: 243 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345
                 GK  I G   PI+G I MD  M D+TD   ++VGD + I G D         +D
Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAED 351

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   G T+ +++  I  R  + Y
Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375


>gi|16273470|ref|NP_439721.1| alanine racemase [Haemophilus influenzae Rd KW20]
 gi|260580354|ref|ZP_05848183.1| alanine racemase [Haemophilus influenzae RdAW]
 gi|1168421|sp|P45257|ALR_HAEIN RecName: Full=Alanine racemase
 gi|1574412|gb|AAC23218.1| alanine racemase, biosynthetic (alr) [Haemophilus influenzae Rd
           KW20]
 gi|260093031|gb|EEW76965.1| alanine racemase [Haemophilus influenzae RdAW]
          Length = 360

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 175/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRA-NLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240
            ++    +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSVTKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|71736924|ref|YP_272530.1| alanine racemase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|123638783|sp|Q48PY9|ALR_PSE14 RecName: Full=Alanine racemase
 gi|71557477|gb|AAZ36688.1| alanine racemase [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 357

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 166/370 (44%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+       G  +  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLAREHRGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + N   V+ S  QL    +         
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELALIVEHNFWTVVHSTWQLEAIEQAQ-LAKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH A AD+ +S  +  Q   F 
Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
           +        E SL +S  +L  P+     +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 SFRKGLAA-EISLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|219856503|ref|YP_002473625.1| hypothetical protein CKR_3160 [Clostridium kluyveri NBRC 12016]
 gi|219570227|dbj|BAH08211.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 399

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 169/379 (44%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I+L  L  N   + +  GN     V+K +AYG G  +IA  L   GV    V  
Sbjct: 14  RPVWEEINLDNLVYNIGQIKSKIGNKELIGVIKADAYGHGAVEIAKVLLENGVSRLAVAI 73

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHP 123
           ++E ++LR    +  I VL  I       I + ++ P++ S    +  SKL         
Sbjct: 74  LDEAIELRKNKIKVPIMVLGIIPHAFLDEIMNYDIEPIVPSYSYASKLSKLAESKDKKIK 133

Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G S+   +++           ++  + SH + AD+     +  Q +++
Sbjct: 134 VHIALDTGMGRIGFSIDPNSVEEIGKISKLPNIEIQSLFSHFSTADETDKAYSCEQFKKY 193

Query: 183 RTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
           + L         K    ++++S+ I+  P+ +  L RPGI +YG              + 
Sbjct: 194 KLLYEELVKKNVKINMRTISNSAAIMELPDTYCDLVRPGIIMYGYYPSTEVDKNNLSIKP 253

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           ++T +A ++ ++   +G  + YG + K  R S+IA   +GYADGY   L G         
Sbjct: 254 IMTLKANVVYVKVLESGSYIGYGRKFKCNRKSVIATLPLGYADGYTRRLFG--------- 304

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
               K  I G   P++G I MD  M D+TD   + +GD + + G         DD+A  +
Sbjct: 305 --KAKVIINGKFAPVVGNICMDQCMVDVTDVGEVNIGDEVVLIGEKDGLKFNADDIAEIT 362

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y++L  IG R  K Y
Sbjct: 363 GTISYEVLCMIGRRVPKLY 381


>gi|28867343|ref|NP_789962.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28850577|gb|AAO53657.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331018536|gb|EGH98592.1| alanine racemase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 357

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 169/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  R  AV+K +AYG G   +A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARDSSGG-RALAVIKADAYGHGAVHVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E  +I + +L  V+ ++ QL    +    G    
Sbjct: 60  IEEALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHAIWQLEAIEQAQ-LGKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH +CAD+ +S  +  Q+  F 
Sbjct: 119 VWLKLDTGMHRVGLHPSEYRAAYQRLLATGKVARVVLMSHFSCADELNSACSDQQVAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    E SL +S  ++  P      +R GI LYG T        +  +Q V+T E+
Sbjct: 179 AARQGLVA-ETSLKNSPAVMGWPKIPSDWSRTGIMLYGATPFDQTQPLAERLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KVISVRELPAGEAVGYGATFVSERPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  +GT  Y +   
Sbjct: 287 LIDGQRSRLLGRVSMDMLCVDLTDVPQAGLGSRVELWGKAVLASEVATQAGTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|157148050|ref|YP_001455368.1| alanine racemase [Citrobacter koseri ATCC BAA-895]
 gi|157085255|gb|ABV14933.1| hypothetical protein CKO_03857 [Citrobacter koseri ATCC BAA-895]
          Length = 359

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/369 (29%), Positives = 176/369 (47%), Gaps = 25/369 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL- 126
           ++LR       I +L G     +  +I   +L   + +  Q    + L + G+  P  + 
Sbjct: 64  LRLRAGGITQPILLLEGFFEATDLPVISAQHLHTAVHNEEQ---LAALEAAGLDEPVTVW 120

Query: 127 -QVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++DTG +RLG+  ++A  F       K + Q   I+SH A AD+P       QL+ F T
Sbjct: 121 MKLDTGMHRLGVRPEKAEAFYQRLTQCKNVRQPVNIVSHFARADEPECGATEQQLDIFNT 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEA 240
                 G + S+A+S GILL P  HF   RPGI LYG +        +    Q V++  +
Sbjct: 181 FCEGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLENQSTGEDFGCQPVMSLIS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R+  AGE V YGG     RD+ + V A+GY DGYP                G   
Sbjct: 240 SLIAVREHKAGEPVGYGGTWISERDTCLGVVAMGYGDGYPRAA-----------PSGTPV 288

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  V I+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R
Sbjct: 289 LVNGREVTIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITR 348

Query: 361 IGTRYAKFY 369
           + +R A  Y
Sbjct: 349 LTSRVAMKY 357


>gi|145631023|ref|ZP_01786799.1| alanine racemase [Haemophilus influenzae R3021]
 gi|144983490|gb|EDJ90966.1| alanine racemase [Haemophilus influenzae R3021]
          Length = 360

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 174/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRA-NLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240
            +     +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|229029807|ref|ZP_04185878.1| Alanine racemase [Bacillus cereus AH1271]
 gi|228731522|gb|EEL82433.1| Alanine racemase [Bacillus cereus AH1271]
          Length = 408

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  IEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNAAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHAVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +++I  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKIAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|66043507|ref|YP_233348.1| alanine racemase [Pseudomonas syringae pv. syringae B728a]
 gi|75503888|sp|Q4ZZW2|ALR_PSEU2 RecName: Full=Alanine racemase
 gi|63254214|gb|AAY35310.1| Alanine racemase [Pseudomonas syringae pv. syringae B728a]
 gi|330972182|gb|EGH72248.1| alanine racemase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 357

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 169/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARAFIDLQALRHNYQLARESSGG-KALAVVKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ +  QL    +    G    
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELALIVEHDLWTVVHATWQLEAIEQAR-LGKPIT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH + AD+ +S  +  QL  F 
Sbjct: 119 VWLKLDTGMHRVGLHPHEYQAGYQRLLATGKVARIVLMSHFSRADELNSGCSDEQLAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
           T        E SL +S  +L  P      +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 TFRKGLAA-ETSLKNSPAVLGWPQIPSDWSRPGIMLYGATPFDQVHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+   GE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPVGEPVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+T+     +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTEVPQAGLGSRVELWGKQVLASEVAQRAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|324326142|gb|ADY21402.1| alanine racemase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 408

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEDAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|284051398|ref|ZP_06381608.1| alanine racemase [Arthrospira platensis str. Paraca]
 gi|291568246|dbj|BAI90518.1| alanine racemase [Arthrospira platensis NIES-39]
          Length = 399

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 119/384 (30%), Positives = 176/384 (45%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               +++D  A+ NN   +  L S   R  AV+K +AYG G   +A  +   GV DF V 
Sbjct: 24  HRAWVEVDRWAIANNVKQIRHLLSPETRFMAVIKADAYGHGAVSVAKIVSEIGVDDFAVA 83

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
           ++ EG++LR    Q  I VL  +H   E K I    L P + +  Q   +S+ L S   S
Sbjct: 84  TIPEGMELRRLGIQQPILVLGAVHTADEIKAIAHWGLQPTLCTPTQALLFSETLQSIQRS 143

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P  L +DTG +RLG   ++AL+F          ++S I SH A AD     +   Q  R
Sbjct: 144 LPVQLNIDTGMSRLGTWWEQALEFVQLVRGLPNLEISGIYSHFATADIRDRTIMDQQHWR 203

Query: 182 FRTLISHYK-----------GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
           F+ +++  +                LA+S+  L     H+ + R G+SLYG     +   
Sbjct: 204 FQQVLAQIQEHTSLLSVPTIKPCLHLANSAATLTDRALHYDMVRVGLSLYGLYPAPHLRS 263

Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +Q  ++  ARI  I+   AG  VSYG +    + + IAV  IGYADG P  LS    
Sbjct: 264 VINLQPAMSIRARITQIKTIEAGCGVSYGYKFIAKQRTPIAVVGIGYADGVPRQLSNCM- 322

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                     K  I+G  VP +G ITMD  M D+T    ++VG+ + + G D    I  D
Sbjct: 323 ----------KVLIRGQFVPQIGAITMDQLMLDVTAIPDLQVGEVVTLLGSDRHHSISAD 372

Query: 345 DVALASGTTNYDLLVRIGTRYAKF 368
           D A   GT ++++L     R  + 
Sbjct: 373 DWAQQLGTISWEILCGFKHRLPRI 396


>gi|60594046|pdb|1XQK|A Chain A, Effect Of A Y265f Mutant On The Transamination Based
           Cycloserine Inactivation Of Alanine Racemase
 gi|60594047|pdb|1XQK|B Chain B, Effect Of A Y265f Mutant On The Transamination Based
           Cycloserine Inactivation Of Alanine Racemase
 gi|60594048|pdb|1XQL|A Chain A, Effect Of A Y265f Mutant On The Transamination Based
           Cycloserine Inactivation Of Alanine Racemase
 gi|60594049|pdb|1XQL|B Chain B, Effect Of A Y265f Mutant On The Transamination Based
           Cycloserine Inactivation Of Alanine Racemase
          Length = 388

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 153/378 (40%), Gaps = 26/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     ++DL A+ +N  ++  L  +     AVVK NAYG G  ++A     AG     V
Sbjct: 5   HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR    +A I VL    P    +     +   +     L   S L S     
Sbjct: 65  AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
            + L +DTG  RLG+  +E          +     L  + +H A AD+ ++   S Q  R
Sbjct: 125 HFHLXMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 184

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           F  ++            A+S+  L  P+  F + R GI++YG            +P++  
Sbjct: 185 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VS+G       +  I    IGYADG+   L            
Sbjct: 245 FSLHSRLVHVKKLQPGEKVSFGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  +   L +  G  + + G      I +DDVA    
Sbjct: 296 ---HVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 351 TINYEVPCTISYRVPRIF 368


>gi|145300176|ref|YP_001143017.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852948|gb|ABO91269.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 357

 Score =  395 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 171/367 (46%), Gaps = 20/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I+  AL++N   +   + + +  AVVK NAYG G   +A  L +     + V  +EE 
Sbjct: 6   AQINTAALRHNLAVVKRHAPDCKIIAVVKANAYGHGLLPVARTLVD--ADAYAVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G        ++   NL   + +  QL    +           L+
Sbjct: 64  LMLRSCAVVKPIVLLEGFFSSADLPVLAANNLQTAVHTWEQLEALEQA-ELPAPVVAWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+   E   F       K + Q   I++H + +D+        Q++ F  L 
Sbjct: 123 LDTGMHRLGVRADEMPAFIARLAKCKNVVQPFNIMTHFSRSDELEQSTTREQIDLFSRLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARII 243
           +   G E ++A+S+GIL  P+ H    RPG+ LYG +   N     + +Q V+T + ++I
Sbjct: 183 APLLG-ERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YG      RD+ + V AIGY DGYP                G    + 
Sbjct: 242 AVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPN-----------GTSVLVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G +VP++G+++MDMT  D+    + + GD   ++G  + ++ VA   GT  Y+L+ ++ +
Sbjct: 291 GRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADEIGTIPYELITKLTS 350

Query: 364 RYAKFYT 370
           R    Y 
Sbjct: 351 RVFMEYV 357


>gi|113971579|ref|YP_735372.1| alanine racemase [Shewanella sp. MR-4]
 gi|123324703|sp|Q0HF52|ALR_SHESM RecName: Full=Alanine racemase
 gi|113886263|gb|ABI40315.1| alanine racemase [Shewanella sp. MR-4]
          Length = 358

 Score =  395 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 177/367 (48%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I  +AL+NN   +   +  ++  AVVK N YG G   +A  L+      F +  
Sbjct: 3   PFPRAEISSSALQNNLAVLRQQASRSQVMAVVKANGYGHGLLNVANCLHT--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +AR+ +L G     +  ++   ++  V+    Q+    +  +      
Sbjct: 61  LEEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQA-TLSKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G +RLG++ ++             + +   +++H ACAD+P +H   VQ++ F
Sbjct: 120 VWLKVDSGMHRLGVTPEQFAQVYARLTACDNVAKPIHLMTHFACADEPENHYTQVQMQTF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAE 239
             L +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +   
Sbjct: 180 NQLTADLPGF-RTLANSAGALYWPKSQGDWIRPGIALYGVSPVTGDCGANHGLIPAMNLV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+I +R   AG+ V YG      +D+ + V AIGY DGYP            +   G  
Sbjct: 239 SRLIAVRDHKAGQPVGYGCYWTAKQDTRLGVVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G  VPI+G+++MDM   D+    +  VGD   ++G  + +++VA   GT  Y+L+ 
Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGADATDLVGDEALLWGAALPVEEVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|20807662|ref|NP_622833.1| alanine racemase [Thermoanaerobacter tengcongensis MB4]
 gi|23813662|sp|Q8RAK6|ALR1_THETN RecName: Full=Alanine racemase 1
 gi|20516208|gb|AAM24437.1| Alanine racemase [Thermoanaerobacter tengcongensis MB4]
          Length = 388

 Score =  395 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 162/379 (42%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R+++ L A+ +N+  +  + G N +  AV+K +AYG G   +A  L   GV  F V 
Sbjct: 7   RPTRVEVYLDAITHNFREIKKIVGKNVKIMAVIKGDAYGHGASYVAKFLEKEGVDYFGVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSH 122
           + EE ++LR    +  I +     P Q + I   +L   +  +       K  +      
Sbjct: 67  TTEEALELREKGIKTPILIFGYTPPTQLRQIVKHDLTQTVYDIKYAKELEKESLKQNKRA 126

Query: 123 PYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG  R+G +    A        N +   L  I SH A A +        Q ++
Sbjct: 127 KVHIKIDTGLGRIGYIDFDLAQKEILEMANMRGLILEGIYSHFAAASEDDRDYCKEQFDK 186

Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234
           F  LIS  +          +A+++ IL     H  + RPGI L+G      + +   ++ 
Sbjct: 187 FMNLISSLEKKRLKIPLKHIANAAAILNLNYSHLDMVRPGIILFGAYPSKRVERKVELRE 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +    R++ ++   AG  + YG      R S+IA   +GYADG    LS          
Sbjct: 247 TLRFTTRVVHLKDVPAGFFIGYGKSFVTKRKSVIATIPVGYADGLDRRLSNNY------- 299

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K  +KG  VPI+G++ MD  M D+TD   +E+GD + I G      + ++ +A   
Sbjct: 300 ----KLLLKGKYVPIVGRVCMDQCMIDVTDVEGVEIGDEVVIIGTQNNETVSVESMADKI 355

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T   ++  RI  R  + Y
Sbjct: 356 ETIPQEVFSRISRRVPRVY 374


>gi|157691230|ref|YP_001485692.1| alanine racemase [Bacillus pumilus SAFR-032]
 gi|157679988|gb|ABV61132.1| alanine racemase [Bacillus pumilus SAFR-032]
          Length = 392

 Score =  395 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 175/386 (45%), Gaps = 31/386 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +N F R    +I+L+A+K+N   M    G + +  AVVK NAYG G  ++A A   AG
Sbjct: 1   MDTNAFYRDTWAEINLSAIKHNVSHMKDHIGQSVQLMAVVKANAYGHGDIEVASAALKAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E V LR    +A I VL  +     K+    N+I    S+  L     +M
Sbjct: 61  ADILAVAFLDEAVSLRNKGIKAPILVLGAVPTEYVKVAVRYNVIMTAYSIDWLKDVINMM 120

Query: 117 SC--GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSH 173
               G    + L++D+G NRLG+   E ++      ++    QL  + +H A AD+    
Sbjct: 121 EGQMGQPIRFHLKIDSGMNRLGVKTIEQVNEVKKLVDEHSYLQLEGVFTHFATADEKDEA 180

Query: 174 VNSVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----N 227
               Q++ F+TL+   H   +    A+S+  L   +  F + R GIS+YG +        
Sbjct: 181 YFDRQVDTFQTLLEPLHTDKLLIHCANSAAGLRFKDVLFNMVRFGISMYGLSPSEEIKDE 240

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++  ++   ++  ++    GE VSYG      +D+ I    +GYADG+   L+G  
Sbjct: 241 LPFKLEEAMSLHTKLAHVKHIQKGESVSYGATYTANQDTWIGTVPVGYADGWIRKLAG-- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      +  + G    I G+I MD  M ++ D L +  G+ + + G      I++
Sbjct: 299 ----------TEVLVGGKRRKITGRICMDQFMVELKDKLPV--GEPVVLIGKQGEDMIQV 346

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           D++A    T NY++   IG R  + Y
Sbjct: 347 DEIAKRLETINYEITCSIGHRVPRVY 372


>gi|254519968|ref|ZP_05132024.1| alanine racemase [Clostridium sp. 7_2_43FAA]
 gi|226913717|gb|EEH98918.1| alanine racemase [Clostridium sp. 7_2_43FAA]
          Length = 385

 Score =  395 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/383 (26%), Positives = 175/383 (45%), Gaps = 25/383 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+    +  +I+L  L  N   +   SGN+    VVK NAYG G  +I+  L N G+   
Sbjct: 1   MNLLHPIWAEINLNNLIYNIDQIKKKSGNSEIIGVVKANAYGHGAVEISKVLLNHGINRL 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCG 119
            V ++ E ++LR    +A I +L          + + ++ P IS+    +   +K  +  
Sbjct: 61  AVANIVEAIELRENEIKAPIMLLGISEDYAIDALLEYDVEPTISTYEFAMNLNNKANALN 120

Query: 120 VSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            +    + +D+G  R+G    +  L+   N       ++  I SH + AD      +  Q
Sbjct: 121 KTVNIHIAMDSGMGRIGFRKNDKGLEDIINISKLSNLKIESIFSHFSTADSKDKSYSLRQ 180

Query: 179 LERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---H 230
           LE + T +   +       + +L++S+ I+  P  H+   RPGI  YG            
Sbjct: 181 LEIYNTFLDKLQEAGVYINKKNLSNSAAIIDLPESHYDYVRPGIIQYGYYPSDEVDKNHF 240

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V+T + +II I++    E + YG   K +R +++A   +GYADGY   LS      
Sbjct: 241 DIKHVLTWKTKIIHIKEVEENEYIGYGQTFKTSRKTVVATLPVGYADGYSRGLSN----- 295

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                  GK  I G + PI+G + MD  M DITD  ++ +G+ + + G D       DD+
Sbjct: 296 ------KGKVIINGQLAPIIGNVCMDQFMVDITDIENVHLGNEVILLGSDGNVKFDADDI 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + T +Y++L  IG R  + Y
Sbjct: 350 AKLTNTISYEVLCLIGRRAPRIY 372


>gi|113461082|ref|YP_719150.1| alanine racemase [Haemophilus somnus 129PT]
 gi|112823125|gb|ABI25214.1| alanine racemase [Haemophilus somnus 129PT]
          Length = 359

 Score =  395 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/360 (30%), Positives = 174/360 (48%), Gaps = 17/360 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I   ALK+N   +   + N++  A+VK NAYG G E ++  L++  V  F V  + E 
Sbjct: 8   ARISSVALKHNIQVIKQKAKNSKVIAIVKANAYGHGLEFVSSTLHHL-VDCFGVARLSEA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L        I +L G     +  II   N+  VI +  QL    K           L+
Sbjct: 67  LRLCAEGITKPILLLEGFFSEDDLPIIAVNNIQTVIHNQEQLYELKKA-KLPNKIKVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLG+ L++  DF          +    +SH + AD+       +QLERF  +  
Sbjct: 126 IDTGMHRLGVDLEQVEDFYQQLVQCSNVKEIGFLSHFSRADELMCGYTEIQLERFLQVTE 185

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILI 245
             +G E S+ +SSGIL     +    RPGI +YG +      + + +  V+T  + +I I
Sbjct: 186 GKQG-ERSIVASSGILFWQQAYLDWIRPGIIMYGISPNNTPAEVYGLIPVMTLTSSLITI 244

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YGG     RD+ I V AIGY DGYP  +             G   +I G 
Sbjct: 245 RNHKKGEPVGYGGSWISERDTKIGVVAIGYGDGYPRDM-----------PQGTPVYINGR 293

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI+G+++MDM   D+      +VGD + ++G ++ +++++  SG  +Y+L+ ++  R 
Sbjct: 294 KVPIVGRVSMDMLTVDLGIESQDKVGDEVILWGKELPIEEISAISGMISYELITKLTPRV 353


>gi|218903226|ref|YP_002451060.1| alanine racemase [Bacillus cereus AH820]
 gi|218535647|gb|ACK88045.1| alanine racemase [Bacillus cereus AH820]
          Length = 391

 Score =  395 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +      ++  +     L   +++ +         
Sbjct: 71  EAIELREAGINVPILILGYTSVAATEEAIQYGVMMTVYRSEDLQGINEIANRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG       +H +   Q  ++
Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|193885273|pdb|3B8T|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant P219a
 gi|193885274|pdb|3B8T|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant P219a
 gi|193885275|pdb|3B8T|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant P219a
 gi|193885276|pdb|3B8T|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
           Mutant P219a
          Length = 379

 Score =  395 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 26  VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 83

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        + 
Sbjct: 84  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMX 142

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 143 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 203 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSALEDRSTGADFGCQPVMSLTSSL 261

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 262 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 310

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 311 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 370

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 371 SRVAMKYV 378


>gi|309787539|ref|ZP_07682151.1| alanine racemase [Shigella dysenteriae 1617]
 gi|308925117|gb|EFP70612.1| alanine racemase [Shigella dysenteriae 1617]
          Length = 353

 Score =  395 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/366 (29%), Positives = 170/366 (46%), Gaps = 21/366 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE ++
Sbjct: 2   INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEALR 59

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       + +L G    ++   I   +    + +  QL    +  S        +++D
Sbjct: 60  LRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMKLD 118

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T    
Sbjct: 119 TGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEG 178

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARIIL 244
             G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +I 
Sbjct: 179 KPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIA 237

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+   GE V YGG     RD+ + V A+GY DGYP                G    + G
Sbjct: 238 VREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLVNG 286

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ +R
Sbjct: 287 REVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELIARLTSR 346

Query: 365 YAKFYT 370
            A  Y 
Sbjct: 347 VAMKYV 352


>gi|82779537|ref|YP_405886.1| alanine racemase [Shigella dysenteriae Sd197]
 gi|123560897|sp|Q327W0|ALR_SHIDS RecName: Full=Alanine racemase
 gi|81243685|gb|ABB64395.1| alanine racemase 1 [Shigella dysenteriae Sd197]
          Length = 359

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+   GE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELIARLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|229155693|ref|ZP_04283799.1| Alanine racemase [Bacillus cereus ATCC 4342]
 gi|228627679|gb|EEK84400.1| Alanine racemase [Bacillus cereus ATCC 4342]
          Length = 408

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMIRVGIGIYGMYPSKEVDHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|260599554|ref|YP_003212125.1| alanine racemase [Cronobacter turicensis z3032]
 gi|260218731|emb|CBA34079.1| Alanine racemase, biosynthetic [Cronobacter turicensis z3032]
          Length = 371

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 171/374 (45%), Gaps = 21/374 (5%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            S +   + ++  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F 
Sbjct: 11  KSMQAATVVVNRRALRHNLQRLRELAPASQLVAVVKANAYGHGLLETARTLPD--ADAFG 68

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           V  +EE ++LR       I +L G     +   I    L   + S  QL    +  +   
Sbjct: 69  VARLEEALRLREGGITQPILLLEGFFNADDLPAIAAQRLHTAVHSEEQLAALEQA-TLSE 127

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                +++DTG +RLG+  + A  F    +  K + Q   ++SH A AD+P       QL
Sbjct: 128 PVTVWMKLDTGMHRLGVRPEAAQAFYNRLAACKNVRQPVNVVSHFARADEPDCGATERQL 187

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTV 235
           + F +      G + S+A+S GIL  P  HF   RPGI LYG +             Q  
Sbjct: 188 DIFNSFTHDKPG-KRSIAASGGILFWPQSHFDWIRPGIILYGVSPLDTHPWGAELGFQPA 246

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + +I +R   AGE V YGG     RD+ + V A+GY DGYP               
Sbjct: 247 MSLISSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRCA-----------P 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +G + Y
Sbjct: 296 TGTPVLVNGREVPIVGRVAMDMICVDLGPDAPEKAGDTVVMWGEALPVERIAEVTGVSAY 355

Query: 356 DLLVRIGTRYAKFY 369
           +L+ R+ +R A  Y
Sbjct: 356 ELVTRLTSRVAMRY 369


>gi|293394140|ref|ZP_06638440.1| alanine racemase [Serratia odorifera DSM 4582]
 gi|291423118|gb|EFE96347.1| alanine racemase [Serratia odorifera DSM 4582]
          Length = 359

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/366 (28%), Positives = 176/366 (48%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +   +  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRQAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++   N+   + S+ QL    +        P  ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFAAEDLPVLVANNIETAVHSIEQLEALEQA-ELARPVPVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       + + Q   I+SH + AD+P+S     Q+  F    
Sbjct: 123 IDTGMHRLGVRPEQAEAFYQRLCACRNVAQPVNIMSHFSRADEPNSDATQQQIACFSAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
               G + S+A+S G LL P+ H +  RPGI LYG +    +      +Q  +T ++ +I
Sbjct: 183 HGKPG-QRSIAASGGTLLWPDAHNEWVRPGIILYGVSPIEQRHGGQFDLQPAMTLKSCLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V A+GY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGEAVGYGGTWVSPRDTRLGVVAMGYGDGYPRSA-----------PTGTPIWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G+++MDM   D+    S  VGD + ++G  + ++ +A  +G   Y+L+ ++  
Sbjct: 291 GREVPIVGRVSMDMISVDLGPDASDRVGDEVVLWGAPLPVERIAEVTGIGAYELITKLTQ 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|117919166|ref|YP_868358.1| alanine racemase [Shewanella sp. ANA-3]
 gi|254802382|sp|A0KT33|ALR_SHESA RecName: Full=Alanine racemase
 gi|117611498|gb|ABK46952.1| alanine racemase [Shewanella sp. ANA-3]
          Length = 358

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 177/367 (48%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I  +AL+NN   +   +  ++  AVVK N YG G   +A  L+      F +  
Sbjct: 3   PFPRAEISSSALQNNLAVLRQQASRSQVMAVVKANGYGHGLLNVANCLHT--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +AR+ +L G     +  ++   ++  V+    Q+    +  +      
Sbjct: 61  LEEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQA-TLSKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G +RLG++ ++             + +   +++H ACAD+P +H   VQ++ F
Sbjct: 120 VWLKVDSGMHRLGVTPEQFTQVYARLMACDNVAKPIHLMTHFACADEPENHYTQVQMQTF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAE 239
             L +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +   
Sbjct: 180 NQLTADLPGF-RTLANSAGALYWPKSQGDWIRPGIALYGVSPVTGDCGANHGLIPAMNLV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+I +R   AG+ V YG      +D+ + V AIGY DGYP            +   G  
Sbjct: 239 SRLIAVRDHKAGQPVGYGCYWTAKQDTRLGVVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G  VPI+G+++MDM   D+    +  VGD   ++G  + +++VA   GT  Y+L+ 
Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGADATDLVGDEALLWGAALPVEEVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|330876475|gb|EGH10624.1| alanine racemase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 355

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 170/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARDSSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E  +I + +L  V+ ++ QL    +    G    
Sbjct: 60  IEEALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHAIWQLGAIEQAQP-GKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH +CAD+ +S  +  Q+  F 
Sbjct: 119 VWLKLDTGMHRVGLHPSEYRAAYQRLLATGKVARVVLMSHFSCADELNSACSDQQVAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    E SL +S  ++  P  H   +R GI LYG T        +  +Q V+T E+
Sbjct: 179 AARQGLVA-ETSLKNSPAVMGWPKIHSDWSRTGIMLYGATPFDQAQPLAERLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AG+ + YG      R   I   A+GYADGYP                G   
Sbjct: 238 KVISVRELPAGDALGYGATFVSERPLRIGAVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  +GT  Y +   
Sbjct: 287 LIDGQRSRLLGRVSMDMLCVDLTDLPQAGLGSRVELWGKGVLASEVATQAGTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|332083545|gb|EGI88765.1| alanine racemase [Shigella boydii 5216-82]
          Length = 359

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 171/368 (46%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEKAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     R++ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERNTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+        GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDNAGDSVILWGEGLPVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 351 SRVAMKYV 358


>gi|262275138|ref|ZP_06052949.1| alanine racemase biosynthetic [Grimontia hollisae CIP 101886]
 gi|262221701|gb|EEY73015.1| alanine racemase biosynthetic [Grimontia hollisae CIP 101886]
          Length = 358

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 169/366 (46%), Gaps = 19/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             I + AL +N   + A++ N+RT A +K N YG G   +A AL       F V  +EE 
Sbjct: 6   AVIHMAALNHNIEIIRAMAPNSRTWAAIKANGYGHGLLPVAKALSTQ-TDGFGVARLEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR    +  I +L G         +   NL   +  + QL    K  +        L+
Sbjct: 65  VSLRKGGIENPILLLEGFFSWADLPALEAHNLQTAVHCIEQLEALEKA-TLRQPLHVWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +   +F      +  + +    +SH  CAD+    V   Q+  F  L 
Sbjct: 124 IDTGMHRLGVRPEHVSEFIERLNASPNVAKPLNFMSHFGCADELDKPVTPQQIALFNELT 183

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
               G + SLA+SSG L+ P+ HF   RPGISLYG +    +      ++  +T  + +I
Sbjct: 184 VSQPGYK-SLAASSGSLMWPDSHFDFVRPGISLYGISPVAARCGQDFGLKPAMTMTSSLI 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+   GE V Y G+    RD+ + V AIGY DGYP                G    + 
Sbjct: 243 AVREVKKGEAVGYSGRWVAERDTQLGVVAIGYGDGYPR-----------VAPDGTPVLVN 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP+ G+++MDM   D+    +  VGD + ++G  + ++++A   GT  Y+L+  + +
Sbjct: 292 GRRVPLAGRVSMDMITVDLGPDSTDSVGDEVIMWGEGLPVEEIARHVGTIGYELVTNLTS 351

Query: 364 RYAKFY 369
           R    Y
Sbjct: 352 RVHIVY 357


>gi|212633597|ref|YP_002310122.1| alanine racemase [Shewanella piezotolerans WP3]
 gi|254802381|sp|B8CIQ9|ALR_SHEPW RecName: Full=Alanine racemase
 gi|212555081|gb|ACJ27535.1| Alanine racemase [Shewanella piezotolerans WP3]
          Length = 358

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/367 (29%), Positives = 178/367 (48%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I   ALK+N   ++ L+ +++  AVVK N YG G   +A  L N     F +  
Sbjct: 3   PFPRAEISRKALKHNLARLHELAPSSKVMAVVKANGYGHGLLNVAQCLDN--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR     A++ +L G    G    + + ++  V+    QL     + +      
Sbjct: 61  LEEALALRTGGVTAKLLLLEGFFRIGDLTTLVEHDIETVVHHESQLEMLESI-NLTKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VD+G +RLG S  +          N  + +   +++H ACAD+PS+   + Q   F
Sbjct: 120 VWLKVDSGMHRLGFSPAQFDATYQRLMANDNVAKPIHLMTHFACADEPSNPSTAEQQRVF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
            TLI    G + +LA+S+G L          RPGI+LYG +     +   H +   +   
Sbjct: 180 DTLIKGLPG-DRTLANSAGALFWQQSQADWIRPGIALYGVSPVFGDLGAKHGLMPAMDLV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I IR+  AGE   YG      +D+ + V AIGY DGYP            +  LG  
Sbjct: 239 SQLIAIREHKAGESAGYGSYWTAEKDTNLGVVAIGYGDGYPR-----------NAPLGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +VPI+G+++MDM   D+    + +VGD   ++G ++ +++VA   GT  Y+L+ 
Sbjct: 288 VLVNGRIVPIVGRVSMDMLTVDLGIDANDKVGDLAVLWGKELPVEEVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|148379617|ref|YP_001254158.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|153933955|ref|YP_001383998.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|153934941|ref|YP_001387541.1| alanine racemase [Clostridium botulinum A str. Hall]
 gi|168180317|ref|ZP_02614981.1| alanine racemase [Clostridium botulinum NCTC 2916]
 gi|226948986|ref|YP_002804077.1| alanine racemase [Clostridium botulinum A2 str. Kyoto]
 gi|148289101|emb|CAL83195.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|152929999|gb|ABS35499.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
 gi|152930855|gb|ABS36354.1| alanine racemase [Clostridium botulinum A str. Hall]
 gi|182668797|gb|EDT80775.1| alanine racemase [Clostridium botulinum NCTC 2916]
 gi|226840935|gb|ACO83601.1| alanine racemase [Clostridium botulinum A2 str. Kyoto]
          Length = 389

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 162/384 (42%), Gaps = 27/384 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            ++  +  +++L  L  N  ++          AVVK N YG G   IA  L   G     
Sbjct: 3   RNHRPVWEEVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLS 62

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V  + E  +LR       I +L    P   + I D N+ PV+ S       SK  S    
Sbjct: 63  VACLSEATELREGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDCANQLSKAASLKNR 122

Query: 122 H-PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG     E+L+      +    ++  + SH + +D+     +  Q 
Sbjct: 123 IVKTHIAVDTGMGRLGFDPTVESLEEIKRIQDLSNIKIEGLCSHFSSSDEKDKSYSEYQF 182

Query: 180 ERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231
           + F+           K     +++S+ I+  P+ +    R GI LYG    +    ++  
Sbjct: 183 KIFQNFRKKLIEMNMKIPIYHMSNSAAIIDLPSTYLDGVRAGIILYGYYPSMEVNKENLH 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T +A I+ I+   +G+ V Y  + K  R S IA+  +GY DGY   LS       
Sbjct: 243 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345
                 GK  I G   PI+G I MD  M D+TD   ++VGD + I G D         +D
Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAED 351

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   G T+ +++  I  R  + Y
Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375


>gi|330986844|gb|EGH84947.1| alanine racemase [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 357

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 166/370 (44%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A + +L G     E  +I + N   V+ S  QL    +         
Sbjct: 60  IEEALELRAAGIHAPVLLLEGFFEADELALIVEHNFWTVVHSTWQLEAIEQAQ-LARPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH A AD+ +S  +  Q   F 
Sbjct: 119 VWLKIDTGMHRVGLYPHEYQSAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
           +        E SL +S  +L  P+     +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 SFRKGLVA-ETSLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQASRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATLAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|312621900|ref|YP_004023513.1| alanine racemase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202367|gb|ADQ45694.1| alanine racemase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 390

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 160/379 (42%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            +  +IDL  L  N  ++   +       AVVK +AYG G  +I+  L   GV    V  
Sbjct: 9   RVWAEIDLDNLVYNLENIKKKILPQTHIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAI 68

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           ++E ++LR +     I +L        + + +  +   + +  Q  + S+     G    
Sbjct: 69  IDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSQAAQKIGKKAK 128

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLER 181
             ++VDTG  R+G    +++++   N       +L  I SH  +  D  S      Q  +
Sbjct: 129 IHIKVDTGMGRIGFLCCEQSVNTILNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFMK 188

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F   +              +A+SS  +  P Y   + R G+ LYG      + +   ++ 
Sbjct: 189 FENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHISIKP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+    S          
Sbjct: 249 VMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------- 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
                  IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A   
Sbjct: 302 ----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQI 357

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++     R  + Y
Sbjct: 358 GTINYEVVCSFSKRIPRVY 376


>gi|308051015|ref|YP_003914581.1| alanine racemase [Ferrimonas balearica DSM 9799]
 gi|307633205|gb|ADN77507.1| alanine racemase [Ferrimonas balearica DSM 9799]
          Length = 358

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 181/366 (49%), Gaps = 21/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I  +AL +N   + AL+ N++  AVVK NAYG G  ++A  + +  V  F +  +EE 
Sbjct: 7   AEIRRSALNHNLQRLRALAPNSKLMAVVKANAYGHGLIRLASWMSD--VDGFGLARIEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR    QAR+ +L G+   ++        L  VI    Q+    +           L+
Sbjct: 65  LALRESGSQARLVLLEGVFSAEDLEQAAQHELDVVIHDAEQVRLL-EHTPLSQPLTIWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG++ ++              +    +++H + AD+  +     Q++RF  L 
Sbjct: 124 IDTGMHRLGVTAEQFSALYQRLCQCDNVRTPPNLMTHFSVADELENPETVRQIQRFNQLA 183

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEARII 243
            +  G +A L++S+G L  P+ H    RPG++LYG    I    +   ++ V+T  ++++
Sbjct: 184 QNLPGEKA-LSNSAGTLSWPSAHGDWVRPGLALYGVNPMIGGRAEQFDLKPVMTMRSKVL 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG   + +RD+ IAV A+GY DGYP                G    I 
Sbjct: 243 AVRELKAGEPVGYGQTWRSSRDTRIAVIAMGYGDGYPRHA-----------VSGTPVLIN 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G   P+ G+I+MDM   ++ ++  ++VGD + ++G  + ++++A  +GT  Y+LL     
Sbjct: 292 GQRYPLAGRISMDMLTVEVGEAP-VQVGDDVVLWGDGLPVEEIAECAGTIPYELLCSTTA 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RVQYRY 356


>gi|289624832|ref|ZP_06457786.1| alanine racemase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647733|ref|ZP_06479076.1| alanine racemase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866551|gb|EGH01260.1| alanine racemase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 357

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 166/370 (44%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLARENSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A + +L G     E  +I + +   V+ S  QL    +         
Sbjct: 60  IEEALELRAAGIHAPVLLLEGFFEADELALIVEHDFWTVVHSTWQLEAIEQAQ-LAKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH A AD+ +S  +  Q   F 
Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARVVLMSHFARADELNSGCSDEQFAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
           +        E SL +S  +L  P+     +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 SFRKGLVA-ETSLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|157373902|ref|YP_001472502.1| alanine racemase [Shewanella sediminis HAW-EB3]
 gi|254802383|sp|A8FRA1|ALR_SHESH RecName: Full=Alanine racemase
 gi|157316276|gb|ABV35374.1| Alanine racemase [Shewanella sediminis HAW-EB3]
          Length = 358

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 174/367 (47%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I   AL+NN   +  ++  ++  AVVK N YG G   +A  L N     F +  
Sbjct: 3   PFPRAEISSKALQNNLARLREIAPGSKVMAVVKANGYGHGLLNVAHCLDN--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            EE + LR    ++++ +L G         + + ++  V+ +  QL      +       
Sbjct: 61  PEEALALREGGVKSKLILLEGFFSQVDLTTLVEHDIDTVVHNEVQLELLESSI-LAKPAT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++D+G +RLG + ++            ++ +   ++SH ACAD+P +    VQ+  F
Sbjct: 120 VWLKIDSGMHRLGFTPEQFAAVYARLEACPQVAKPINLMSHFACADEPDNPSTKVQINLF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239
             LI    G + SLA+S+G L  P       RPGI+LYG +  I     +H +   +   
Sbjct: 180 NDLIKDLPG-QRSLANSAGTLYWPESQADWIRPGIALYGVSPVIGDLGGNHGLMPAMELV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R   AGE V YG       D+ + V AIGY DGYP            +   G  
Sbjct: 239 SQLIAVRDHKAGEPVGYGSSWYAKEDTKLGVVAIGYGDGYPR-----------NAPEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G  VPI+G+++MDM   D+  + +  +GD   ++G  + +++VA   GT  Y+L+ 
Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGINATDLIGDDAILWGKALPVEEVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|282895986|ref|ZP_06304017.1| Alanine racemase region protein [Raphidiopsis brookii D9]
 gi|281199096|gb|EFA73966.1| Alanine racemase region protein [Raphidiopsis brookii D9]
          Length = 385

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 176/381 (46%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++   ++IDL AL NN   +   LS   +  AVVK +AYG G   +A  +  AG     V
Sbjct: 12  SQRAWVEIDLGALSNNVKQLVGFLSPGTQLMAVVKADAYGHGAITVATTVLAAGATWLGV 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118
            +V EG++LR    +A I +L   + P Q   I    L P + S  Q   +S+ ++    
Sbjct: 72  ATVTEGIQLREAGIKAPILILGATYTPEQIHAITSWQLEPTLCSPGQALIFSQFLNSIDH 131

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               P  +++DTG +RLG   Q+A  F           ++ + SH A AD P + +   Q
Sbjct: 132 NYKLPVHIKLDTGMSRLGAEWQQAGQFAQFVQELPRLHIASVYSHFATADSPDTTIMEQQ 191

Query: 179 LERFRTLISH--YKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
             RF+  I+    +GI+     LA+S+  L     H+ + R G+++YG     ++ + +Q
Sbjct: 192 HGRFQQAIAQIRARGIKIPSLHLANSAATLGDKELHYDMVRAGLAIYGLYPAAHQRNYLQ 251

Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
               +  +ARI  I+    G  VSYG +    R+  I V  IGYADG P  LS       
Sbjct: 252 LRPALQVKARITHIKTISKGTGVSYGHKFIAPREMRIGVVGIGYADGVPRGLSNQM---- 307

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                  +  ++G+ V  +G ITMD  M DI+  + ++ G+ + + G      I  DD A
Sbjct: 308 -------EVLVQGHRVQQIGMITMDQLMIDISPLVEVQEGEIVTLLGEQGEEKITADDWA 360

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
               T +++++     R  + 
Sbjct: 361 NQLNTISWEIICGFKHRLPRV 381


>gi|288937652|ref|YP_003441711.1| alanine racemase [Klebsiella variicola At-22]
 gi|288892361|gb|ADC60679.1| alanine racemase [Klebsiella variicola At-22]
          Length = 359

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 174/367 (47%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRDLAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G    ++  +I    L   + S  QL    +           ++
Sbjct: 64  LRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQA-DLPEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   ++SH A AD+P+      QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G+  S+A+S GILL P  H+   RPGI LYG +        K    Q V+T  + +
Sbjct: 183 EGKPGL-RSIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGKDFGCQPVMTLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLAVERIAEITKVSAYELITRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMKY 357


>gi|301170339|emb|CBW29945.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus
           influenzae 10810]
          Length = 360

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 175/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L  + V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRA-NLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKELPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240
            +     +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|182419267|ref|ZP_02950520.1| alanine racemase [Clostridium butyricum 5521]
 gi|237667853|ref|ZP_04527837.1| alanine racemase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376907|gb|EDT74478.1| alanine racemase [Clostridium butyricum 5521]
 gi|237656201|gb|EEP53757.1| alanine racemase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 388

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 27/381 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL AL  N  ++ +L+ +    AVVK + YG G    AP L   G     V  
Sbjct: 6   RPVWAEIDLDALAYNMKNIKSLAEDKEVIAVVKADCYGHGAIDTAPVLLENGASRLAVAV 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           + EG++LR     A I +L        + +   ++   + S+      SK  +S      
Sbjct: 66  LTEGIELRKAKITAPIMILGYTPEYLGEELITYDIEQTVYSLEYAQNLSKTALSLNKKAK 125

Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G    E +L       +     +  + +H + AD+ +      Q +++
Sbjct: 126 IHIALDTGMGRIGFMPNETSLKEVSEICSLPGLDVIGMFTHFSTADEENKDYTLEQFDKY 185

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNY--HFQLTRPGISLYGGTDKIN---KSHPM 232
              +     +        +++S  I+  P         R GI LYG         ++  +
Sbjct: 186 MNFLHELSKLNISIPLKHVSNSGAIMDMPETFKDLDAVRAGIILYGYYPSHEVKKENLSL 245

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T +A++  +++      +SYG   K  R S+IA   IGYADGY   L         
Sbjct: 246 KPALTIKAKVAHVKEMDENMYISYGRTFKTKRKSIIATIPIGYADGYSRLL--------- 296

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
               G K  + G +VPI+G+I MD  M D+TD+ +++ GD + I G      I  DD A 
Sbjct: 297 --IPGAKVIVNGKLVPIVGRICMDQCMIDVTDAGTVKTGDEVIILGQFENLKINADDYAQ 354

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY++L     R  K Y
Sbjct: 355 ILGTINYEVLCMFKHRIPKVY 375


>gi|283787218|ref|YP_003367083.1| alanine racemase [Citrobacter rodentium ICC168]
 gi|282950672|emb|CBG90346.1| alanine racemase [Citrobacter rodentium ICC168]
          Length = 359

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/369 (30%), Positives = 174/369 (47%), Gaps = 25/369 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRQLAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL- 126
           ++LR       + +L G     +   I   +L   + +  Q    + L S  +  P  + 
Sbjct: 64  LRLRAGGITQPVLLLEGFFEASDLPTISAQHLHTAVHNEEQ---LAALESASLDEPVTVW 120

Query: 127 -QVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++DTG +RLG+  ++A  F       K + Q   IISH A AD+P S     QL  F T
Sbjct: 121 MKLDTGMHRLGVLPEQAEAFYQRLTKCKNVRQPVNIISHFARADEPESGATEKQLNIFNT 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEA 240
                 G + S+A+S GILL    HF   RPGI LYG +             Q V++  +
Sbjct: 181 FCEGKPG-QRSIAASGGILLWSQSHFNWARPGIILYGVSPLENRSTGADFGCQPVMSLTS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R+  AGE V YGG  +  RD+ + V A+GY DGYP                G   
Sbjct: 240 SLIAVREHKAGEPVGYGGTWQSERDTRLGVVAMGYGDGYPRAA-----------PSGTPV 288

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R
Sbjct: 289 LVNGREVPIVGRVAMDMICVDLGPEAQDKAGDPVILWGEGLPVERIAEITKVSAYELITR 348

Query: 361 IGTRYAKFY 369
           + +R A  Y
Sbjct: 349 LTSRVAMKY 357


>gi|298484845|ref|ZP_07002945.1| Alanine racemase, catabolic [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160699|gb|EFI01720.1| Alanine racemase, catabolic [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 357

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 166/370 (44%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLARENSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A + +L G     E  +I + +   V+ S  QL    +         
Sbjct: 60  IEEALELRAAGIHAPVLLLEGFFEADELALIVEHDFWTVVHSTWQLEAIEQAQ-LAKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH A AD+ +S  +  Q   F 
Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
           +        E SL +S  +L  P+     +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 SFRKGLVA-ETSLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|332288773|ref|YP_004419625.1| alanine racemase [Gallibacterium anatis UMN179]
 gi|330431669|gb|AEC16728.1| alanine racemase [Gallibacterium anatis UMN179]
          Length = 357

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/360 (30%), Positives = 175/360 (48%), Gaps = 17/360 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            KI   ALK+N   +++L+ N++  AVVK NAYG G E ++  + +  V  F V  + E 
Sbjct: 6   AKISSLALKHNIEKIHSLAPNSKIIAVVKANAYGHGVEFVSQTVQDN-VDCFGVARLGEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +  I+   NL  V+    QL                ++
Sbjct: 65  LRLRSNGITKPILLLEGFFSASDLPILSVNNLETVVHCDEQLEALLAA-KLPNPINVWIK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLG+ L E   +       +       ISH + AD+  S     QL+RF T  +
Sbjct: 124 IDTGMHRLGVQLDEVDRYYQALSASQNVNQIRFISHFSRADELDSDYTLKQLDRFLTACA 183

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILI 245
              G E S+A+S GIL   + H    RPGI +YG +     + ++ +  V+T  + +I +
Sbjct: 184 GKVG-EKSIAASGGILFWKDSHLDWIRPGIIMYGISANSTPSSAYDLIPVMTLTSSLIAV 242

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YGG+    +D+ I V AIGY DGYP             V  G   +I G 
Sbjct: 243 RNHKKGEPVGYGGRWVSEKDTKIGVVAIGYGDGYPR-----------DVPTGTPVYINGR 291

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI+GK++MDM   D+      +VGD + ++G ++ ++++A   G  +Y+L+ ++  R 
Sbjct: 292 RVPIVGKVSMDMLTVDLGADAQDKVGDEVILWGKELPIEEIAEIIGVISYELVTKLTPRV 351


>gi|160873869|ref|YP_001553185.1| alanine racemase [Shewanella baltica OS195]
 gi|304411180|ref|ZP_07392795.1| alanine racemase [Shewanella baltica OS183]
 gi|307306475|ref|ZP_07586218.1| alanine racemase [Shewanella baltica BA175]
 gi|254802377|sp|A9L126|ALR_SHEB9 RecName: Full=Alanine racemase
 gi|160859391|gb|ABX47925.1| alanine racemase [Shewanella baltica OS195]
 gi|304350373|gb|EFM14776.1| alanine racemase [Shewanella baltica OS183]
 gi|306910766|gb|EFN41194.1| alanine racemase [Shewanella baltica BA175]
 gi|315266096|gb|ADT92949.1| alanine racemase [Shewanella baltica OS678]
          Length = 358

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 101/368 (27%), Positives = 175/368 (47%), Gaps = 20/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N F R +I  +AL+ N  ++   +  +R  AVVK N YG G   +A  L +     F + 
Sbjct: 2   NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVANCLVS--ADGFGLA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++E ++LR     AR+ +L G     +  ++   ++  V+    QL    + +      
Sbjct: 60  RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTV-LSKPV 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG + ++             + +   +++H ACAD+P +   SVQ+  
Sbjct: 119 TVWLKVDSGMHRLGFTPEQFSTVYDRLMACSNVAKPIHLMTHFACADEPDNTYTSVQMAA 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           F TL +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +  
Sbjct: 179 FNTLTAGLPGF-RTLANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGANHGLVPAMEL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +++I +R   A + V YG      +D+ + V AIGY DGYP            +   G 
Sbjct: 238 VSQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYPR-----------NAPEGT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+      +VGD   ++G  + +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|27379181|ref|NP_770710.1| alanine racemase [Bradyrhizobium japonicum USDA 110]
 gi|27352332|dbj|BAC49335.1| alanine racemase [Bradyrhizobium japonicum USDA 110]
          Length = 423

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 133/364 (36%), Positives = 193/364 (53%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  AAV+K +AYG G  ++A AL+ AG + FFV ++EE 
Sbjct: 33  LTVDLDAIIANWRKLEKTAVPAECAAVIKADAYGCGAAQVARALHKAGCKTFFVATIEEA 92

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
            K+R   P+  I+VL G      +     N  PVI  + +L  +       G +   A+ 
Sbjct: 93  RKVRAAVPEPTIYVLGGYFQNTGEHYAQINCRPVIGDLNELAEWDVFCRRTGWNGGAAVH 152

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL+L EA            G ++L++SHL  A+  +S VN+ QL  FR + S
Sbjct: 153 IDTGMNRLGLTLAEAQAIIPRINAGDHG-ITLVMSHLVSAEQLNSPVNAKQLASFRGIAS 211

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ A+LA+SSGI LG  + F L RPG +LYG        +PMQ VV  +ARI+ IR 
Sbjct: 212 EFSGVPAALANSSGIFLGAPFQFDLVRPGAALYGVNPTPEADNPMQPVVDLKARIVQIRN 271

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YGG     R + +A+ A+GYADGY    S  D         G +  + G   
Sbjct: 272 VERGESVGYGGTWTARRPTKLAIIAVGYADGYFRAASSNDGTR------GAEVIVAGKRC 325

Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P+ G+++MD+   DITD        G  + + G  I +D++A   GT  Y++L  +G RY
Sbjct: 326 PVAGRVSMDLIAIDITDLPPNAARRGHLVTLIGEGITVDELAHHFGTIGYEVLTSLGHRY 385

Query: 366 AKFY 369
           A+ Y
Sbjct: 386 ARVY 389


>gi|331091068|ref|ZP_08339910.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405290|gb|EGG84826.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 388

 Score =  394 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 166/386 (43%), Gaps = 27/386 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M +   +  KIDL A+  N   M     G+ +  AV+K + YG G  ++A  L     + 
Sbjct: 1   MKTYSRVYAKIDLDAVTYNMEQMKQRIDGDTKIMAVIKSDGYGHGAIQVAEVLEKYDYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
            F V +++E V LR    Q  I VL  I P Q   + D ++   + +       S     
Sbjct: 61  GFAVATLDEAVVLRTEGIQKPILVLGCIFPDQYLEMLDNDIRMNVYTEEMAKEISYMARR 120

Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +    +++DTG  RLG ++  E++D            +  + +H A AD+       
Sbjct: 121 EGKTAYLHIKLDTGMARLGFAVNNESVDAITRISKLPNVNMEGVFTHFAKADETDKTFTK 180

Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            Q+ +F ++    +           A+S+ I+   +  F + R GIS YG          
Sbjct: 181 NQISQFVSMTEKLRERGVTFPYEHCANSAAIIDVEDARFDIVRAGISTYGLYPSEEVNQN 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++  +  ++ +  +++   G  VSYGG     +   IA   +GY DGYP +LSG   
Sbjct: 241 AVHLKPALALKSHVAFVKEIEEGTPVSYGGTFVAEKKMKIATIPVGYGDGYPRSLSG--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G    ILG+I MD  M D+TD   +  GD + + G D    I ++
Sbjct: 298 --------KGYVLIRGKKANILGRICMDQFMVDVTDIEGVSFGDKVTLIGRDGNEAISVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370
            ++  SG  NY+ +  +G R  + Y 
Sbjct: 350 KLSELSGRFNYEFICALGKRIPRVYV 375


>gi|295101040|emb|CBK98585.1| alanine racemase [Faecalibacterium prausnitzii L2-6]
          Length = 398

 Score =  394 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 169/385 (43%), Gaps = 32/385 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +  +IDL AL++N+ ++ A +G     AVVK ++YG G  + A      G     V+ + 
Sbjct: 10  VWAEIDLDALRHNFRAVKARAGEMPLCAVVKADSYGHGAVECAKVFAEEGAAWLAVSCLA 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E  +LR       I +L  + P    ++   ++     S+PQ    S+   + GV     
Sbjct: 70  EARQLRKSGLTLPILILGHVEPSCAPVLIQEDITAACYSLPQAKALSEAACAAGVKVKVH 129

Query: 126 LQVDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQ 178
           L+ DTG  R+G +L      AL    ++       ++ +  H A ADD S+      S Q
Sbjct: 130 LKADTGMGRIGFALRTDFDAALAEMLDACRLPGLDVTGLFQHFAVADDDSADSVAYTSQQ 189

Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYH------FQLTRPGISLYGGTDKIN 227
            E F         + ++       +S+G++L P++         + RPGI LYG      
Sbjct: 190 HELFVRACQGLAEAGFEPAVVHCDNSAGVMLHPDWPAGLPRTHCMARPGIILYGFDPSDE 249

Query: 228 KSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                 + V+  +  + ++++   G+  SYG +    + + +A    GYADGYP  LS  
Sbjct: 250 VRFGIFRPVMKLKTIVSMVKEMQPGQSASYGRRFTAEKPTKVATLCAGYADGYPRLLS-- 307

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--KLD 344
                      G   IKG   P+LG++ MD  M D++    ++ GD   ++G ++    +
Sbjct: 308 --------CGKGIVEIKGMPCPVLGRVCMDQIMVDVSALPDVQEGDEAILWGGEVSDSAE 359

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            VA  + T +Y++L  +  R  + Y
Sbjct: 360 TVAHKTDTISYEVLCGVSRRVPRVY 384


>gi|320539399|ref|ZP_08039068.1| alanine racemase 1, PLP-binding, biosynthetic [Serratia symbiotica
           str. Tucson]
 gi|320030524|gb|EFW12534.1| alanine racemase 1, PLP-binding, biosynthetic [Serratia symbiotica
           str. Tucson]
          Length = 359

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 110/366 (30%), Positives = 178/366 (48%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID +AL++N   +   +  +   A+VK NAYG G  + A  L +     F V+ + E 
Sbjct: 6   AVIDRSALRHNLQQVRRQAPQSHLIAIVKANAYGHGMLETAHTLQD--ADCFGVSRISEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++   N+  V+ S  QL    +        P  ++
Sbjct: 64  LALRFGGIVKPILLLEGFFSAEDLPLLVANNIETVVHSSEQLEALEQA-KLAHPLPVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F         + Q   I+S  +CAD+P S     Q+  F    
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLCACHNVAQPVNIMSQFSCADEPGSDATLKQIACFEQFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEARII 243
               G + S+A+SSGILL P+ H Q  RPGI LYG +   N +      Q  +T ++ +I
Sbjct: 183 RGKPG-QRSIAASSGILLWPDAHNQWVRPGIILYGVSPLDNANGSQHLLQPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R  LAGE V YGG     RD+ + V AIGY DGYP +                  ++ 
Sbjct: 242 AVRDHLAGEPVGYGGTWISQRDTRLGVVAIGYGDGYPRSA-----------PTCTPIWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G+++MDM   D+    + +VGD   ++G  + ++ +A+ +G + Y+L+ ++  
Sbjct: 291 GREVPIVGRVSMDMISVDLGPDATDKVGDEAVLWGQALPVERIAIYAGISVYELVTKLTQ 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|196046083|ref|ZP_03113311.1| alanine racemase [Bacillus cereus 03BB108]
 gi|225864057|ref|YP_002749435.1| alanine racemase [Bacillus cereus 03BB102]
 gi|196023138|gb|EDX61817.1| alanine racemase [Bacillus cereus 03BB108]
 gi|225790862|gb|ACO31079.1| alanine racemase [Bacillus cereus 03BB102]
          Length = 391

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    +  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 71  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG       +H +   Q  ++
Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|145632963|ref|ZP_01788696.1| alanine racemase [Haemophilus influenzae 3655]
 gi|144986619|gb|EDJ93185.1| alanine racemase [Haemophilus influenzae 3655]
          Length = 360

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 175/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L  + V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  ++ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETIVHNREQLEALKRA-NLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240
            +     +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIIYGISPTDTIGKEFDLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|70733320|ref|YP_263094.1| alanine racemase [Pseudomonas fluorescens Pf-5]
 gi|123652058|sp|Q4K3T9|ALR_PSEF5 RecName: Full=Alanine racemase
 gi|68347619|gb|AAY95225.1| alanine racemase [Pseudomonas fluorescens Pf-5]
          Length = 357

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 168/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      +   R  AV+K +AYG G  + A AL       F V  
Sbjct: 2   RPARALIDLQALRHNYQLARE-TSGVRALAVIKADAYGHGAVRCAQAL-EGEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +   V+ S+ QL    +  +      
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEASELALIVEHDFWCVVHSLWQLEAIEQA-AVAKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++              +  +++SH A AD+     +S Q+  F 
Sbjct: 119 VWLKLDSGMHRVGLHPKDYQVAYQRLQASGKVEKIVLMSHFARADELDCPRSSEQVAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
                  G E SL +S  ++  P+      RPGI LYG T     +     +Q V+T E+
Sbjct: 179 AARQGL-GAEISLRNSPAVMGWPSVPSDWVRPGIMLYGSTPFEENNSVAARLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG +    R   I V A+GYADGYP                G   
Sbjct: 238 KVICVRELPAGEPVGYGARFITDRPMRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    +LG+++MDM   D+TD     +G  ++++G +I   DVA A+ T  Y L   
Sbjct: 287 LVAGQRSRLLGRVSMDMLCVDLTDVPQAGLGSTVELWGKNILASDVAQAADTIPYQLFCN 346

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 347 L-RRVPLVYC 355


>gi|297617945|ref|YP_003703104.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145782|gb|ADI02539.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680]
          Length = 379

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 160/384 (41%), Gaps = 26/384 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           MH       ++DL A+ +N   +  L  G AR   VVK NAYG G  ++A      G + 
Sbjct: 2   MHLARPTWAEVDLGAVAHNLKELRNLLVGTARLMPVVKANAYGHGILEVARTCVEEGAEF 61

Query: 60  FFVTSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
             V  ++E + L+        I VL        +      +             S++   
Sbjct: 62  LAVALLDEALLLKEAGINRPRILVLGATSEEGAQEAVKQGVRLTCFDRRLAEAVSRVACK 121

Query: 118 CGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                   +++DTG  RLG    E AL            ++  I +H A AD        
Sbjct: 122 LQKPGYIHIKIDTGMGRLGFYPDERALADIEEFLRLPGLEVEGIFTHFAAADAADKSYTE 181

Query: 177 VQLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            QL RF   +     KG++      A+S+ ++  P+ H  L RPGIS+YG       ++ 
Sbjct: 182 WQLRRFLDFVGELEQKGVKIPLKHAANSAALIDLPSAHLDLVRPGISVYGLWPSDEVANR 241

Query: 232 MQ---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
                  +   +RI++++    G  VSYG     TR + +A   IGYADGY   LSG   
Sbjct: 242 CLNLIPAMRLLSRIVMLKDLPPGHAVSYGCTYITTRTTKVATVPIGYADGYSRLLSGKV- 300

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---PDIKLDD 345
                        ++G  V  +G+I MD  MFD+++   +  GD + +FG     +  D+
Sbjct: 301 ----------HAVVRGKRVCGIGRICMDQCMFDVSEVEGVREGDEVILFGRPEDGVTADE 350

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY+++  +G R  + Y
Sbjct: 351 LASLIGTINYEIVCMLGPRIPRIY 374


>gi|217971929|ref|YP_002356680.1| alanine racemase [Shewanella baltica OS223]
 gi|254802374|sp|B8E9P2|ALR_SHEB2 RecName: Full=Alanine racemase
 gi|217497064|gb|ACK45257.1| alanine racemase [Shewanella baltica OS223]
          Length = 358

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 175/368 (47%), Gaps = 20/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N F R +I  +AL+ N  ++   +  +R  AVVK N YG G   +A  L +     F + 
Sbjct: 2   NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVAHCLVS--ADGFGLA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++E ++LR     AR+ +L G     +  ++   ++  V+    QL    + +      
Sbjct: 60  RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTV-LSKPV 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG + ++             + +   +++H ACAD+P +   SVQ+  
Sbjct: 119 TVWLKVDSGMHRLGFTPEQFSTVYDRLMACPNVAKPIHLMTHFACADEPDNTYTSVQMAA 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           F +L +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +  
Sbjct: 179 FNSLTAGLPGF-RTLANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGANHGLVPAMEL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +++I +R   A + V YG      +D+ + V AIGY DGYP            +   G 
Sbjct: 238 VSQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYPR-----------NAPEGT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+      +VGD   ++G  + +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|170717657|ref|YP_001784734.1| alanine racemase [Haemophilus somnus 2336]
 gi|168825786|gb|ACA31157.1| alanine racemase [Haemophilus somnus 2336]
          Length = 359

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/360 (30%), Positives = 174/360 (48%), Gaps = 17/360 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I   ALK+N   +   + N++  A+VK NAYG G E ++  L++  V  F V  + E 
Sbjct: 8   ARISSVALKHNIQVIKQKAKNSKVIAIVKANAYGHGLEFVSSTLHHL-VDCFGVARLSEA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L        I +L G     +  II   N+  VI +  QL    K           L+
Sbjct: 67  LRLCTEGITKPILLLEGFFSEDDLPIIAVNNIQTVIHNQEQLYVLKKA-KLPNKIKVWLK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLG+ L++  DF          +    +SH + AD+       +QLERF  +  
Sbjct: 126 IDTGMHRLGVDLEQVEDFYQQLVQCSNVKEIGFLSHFSRADELMCGYTEIQLERFLQVTE 185

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILI 245
             +G E S+ +SSGIL     +    RPGI +YG +      + + +  V+T  + +I I
Sbjct: 186 GKQG-ERSIVASSGILFWQQAYLDWIRPGIIMYGISPNNTPAEVYGLIPVMTLTSSLITI 244

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YGG     RD+ I V AIGY DGYP  +             G   +I G 
Sbjct: 245 RNHKKGEPVGYGGSWISERDTKIGVVAIGYGDGYPRDM-----------PQGTPVYINGR 293

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VPI+G+++MDM   D+      +VGD + ++G ++ +++++  SG  +Y+L+ ++  R 
Sbjct: 294 KVPIVGRVSMDMLTVDLGIESQDKVGDEVILWGKELPIEEISAISGMISYELITKLTPRV 353


>gi|159029814|emb|CAO90868.1| alr [Microcystis aeruginosa PCC 7806]
          Length = 378

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 180/377 (47%), Gaps = 25/377 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              ++ID +AL+ N   + AL +      AV+K +AYG G  K+A ++  AG Q   + +
Sbjct: 8   RAWVEIDRSALQQNVRKVKALLAPKTELMAVIKADAYGHGAVKVANSVLEAGAQSLAIAT 67

Query: 65  VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
           + EG++LR     A I +L  +  P +   +    L P +  + Q+  ++ +M       
Sbjct: 68  IGEGIELREAGIVAPIMILGAVNTPEEVAALAHWQLQPTLVQIEQVRIFAAVMRRLEQRL 127

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P  +++DTG +RLG        F          +++ I SH A ADDP+  +  +Q +RF
Sbjct: 128 PVHIKLDTGMSRLGTPWHNGTKFVEQVLEAPNLKIASIYSHFATADDPNPEIMQLQRQRF 187

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235
           +  I+  K          LA+S+  L   + H+   R G++LYG      +    P+Q V
Sbjct: 188 QQAIAELKSKGYHPPCLHLANSAATLSDRSLHYDRVRVGLALYGLYPADHLTDKVPLQPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +ARI  ++   AG  VSYG Q    +D+ IAV  IGYADG P  LS           
Sbjct: 248 LQVKARIAQVKTIAAGSGVSYGHQYIAAKDTRIAVVGIGYADGIPRNLSNRL-------- 299

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              K  ++G +VP +G ITMD  M D+++   ++ G+ + + G D    I  DD A   G
Sbjct: 300 ---KVSLRGRLVPQIGAITMDQLMIDVSEIPEVKTGEIVTLIGKDGLQCITADDWARDLG 356

Query: 352 TTNYDLLVRIGTRYAKF 368
           T ++++L     R  + 
Sbjct: 357 TISWEILCGFKHRLPRI 373


>gi|90417095|ref|ZP_01225023.1| alanine racemase [marine gamma proteobacterium HTCC2207]
 gi|90331111|gb|EAS46367.1| alanine racemase [marine gamma proteobacterium HTCC2207]
          Length = 358

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/371 (28%), Positives = 172/371 (46%), Gaps = 20/371 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +  IDL AL++N+    +L+  ++T  +VK NAYG G  K++ AL +     F V 
Sbjct: 2   SRPTKAVIDLQALRHNYELAQSLAPKSKTIPMVKANAYGHGAIKVSQALSDI-APAFGVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE ++LR    +  I +L G     E K+        ++ +  Q           +  
Sbjct: 61  CIEEALELRDTGIKQPILLLEGTFEATELKLAATKGFWVMVENHQQKEAILNA-DLALPL 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L VDTG +RLG    E  D       ++ + Q  +  SH ACAD+  S     Q++ 
Sbjct: 120 NVWLGVDTGMHRLGFQPGEIADIYKTLNSSRNISQPIVFTSHFACADNLDSDSTLKQIQT 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTA 238
           F+   +    ++ SLA+S+ IL  P    +  RPG  LYG +        +  ++ V++ 
Sbjct: 180 FK-ACAPVTALQ-SLANSAAILAWPKAQREWQRPGYMLYGNSPFAVAQENADQLKPVMSF 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           E+ +I +R   AGE V Y       R+S IA   +GY DGYP                G 
Sbjct: 238 ESAVISLRTIAAGESVGYTANWTAERESTIATITVGYGDGYPRNAIN-----------GT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I G   P++G+++MDM   D+T    + +GD   ++GP++ +++VA    T  Y+LL
Sbjct: 287 PVLINGIRCPLVGRVSMDMITVDVTALSEVAIGDKAVLWGPELPVNEVASYCDTIGYELL 346

Query: 359 VRIGTRYAKFY 369
            R+  R  + Y
Sbjct: 347 TRMPERVPRVY 357


>gi|121535443|ref|ZP_01667253.1| alanine racemase [Thermosinus carboxydivorans Nor1]
 gi|121305952|gb|EAX46884.1| alanine racemase [Thermosinus carboxydivorans Nor1]
          Length = 413

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/379 (27%), Positives = 168/379 (44%), Gaps = 24/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               +++DL A+++N   +   L  + R  AVVK NAYG G   ++ A   AG     V 
Sbjct: 40  RPTHVQVDLGAIRHNIIQIRRRLKPSTRLTAVVKANAYGHGAIPVSRAALAAGADSLAVA 99

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
             EEGV+LR       I VL    P Q  ++ + +L   + +   L   +    C G   
Sbjct: 100 LPEEGVELRDAGFTVPILVLGLTLPEQASVLVEYDLTATVCTEDGLKALAHAARCAGKRA 159

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++ DTG  R+GL+  + L F   +      +L  + +HLA AD         QL  F
Sbjct: 160 RVMVKADTGMGRIGLTSDKLLPFLTAAAAMPEIELRGLFTHLATADAADKSYARRQLAAF 219

Query: 183 RTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235
             ++             S A+S+ ++   + HF   RPGI++YG    +   +S  ++  
Sbjct: 220 TAILDQAAAAGILLPYISAANSATVIDIVDGHFNTVRPGIAIYGLPPSLEMHQSLDLRPA 279

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  + RI+ I++  AG  VSYG      + + +A   +GYADGY   LS           
Sbjct: 280 MEFKTRIVYIKEVPAGFAVSYGCTYVTPQATFLATLPVGYADGYSRHLSN---------- 329

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
                 I G   P++G+I MD T+ D+       VGD   +FG     +I + ++A  +G
Sbjct: 330 -KACVLIGGKRRPVVGRICMDQTIVDLGPVCDAAVGDEAVLFGRQGDAEITVTELAELAG 388

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T NY+L+  I  R  + Y 
Sbjct: 389 TINYELVCGISGRVPRLYV 407


>gi|152999256|ref|YP_001364937.1| alanine racemase [Shewanella baltica OS185]
 gi|254802376|sp|A6WJ85|ALR_SHEB8 RecName: Full=Alanine racemase
 gi|151363874|gb|ABS06874.1| alanine racemase [Shewanella baltica OS185]
          Length = 358

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 175/368 (47%), Gaps = 20/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N F R +I  +AL+ N  ++   +  +R  AVVK N YG G   +A  L +     F + 
Sbjct: 2   NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVANCLVS--ADGFGLA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++E ++LR     AR+ +L G     +  ++   ++  V+    QL    + +      
Sbjct: 60  RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTV-LSKPV 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG + ++             + +   +++H ACAD+P +   SVQ+  
Sbjct: 119 TVWLKVDSGMHRLGFTPEQFSTVYARLMACPNVAKPIHLMTHFACADEPDNSYTSVQMAA 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           F +L +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +  
Sbjct: 179 FNSLTAGLPGF-RTLANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGANHGLVPAMEL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +++I +R   A + V YG      +D+ + V AIGY DGYP            +   G 
Sbjct: 238 VSQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYPR-----------NAPEGT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+      +VGD   ++G  + +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|311071135|ref|YP_003976058.1| alanine racemase [Bacillus atrophaeus 1942]
 gi|310871652|gb|ADP35127.1| alanine racemase [Bacillus atrophaeus 1942]
          Length = 389

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 163/384 (42%), Gaps = 30/384 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M+   F R    +I+L+A++ N  +M    G+     AVVK NAYG G  ++A A  +AG
Sbjct: 1   MNIKPFYRDTWAEINLSAIEENVSNMKKHIGDRVELMAVVKANAYGHGDAEVAEAALSAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL  + P   +I  + ++     SV  +   ++ +
Sbjct: 61  ASCLAVAILDEAISLRKRGLAAPILVLGAVPPEYVEIAAEYDVTLTGYSVEWIQEAARHI 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVN 175
                  + L+VDTG NRLG+  +E +        +  G L   + +H A AD+      
Sbjct: 121 KE-TPVHFHLKVDTGMNRLGVKTEEEVQNVMKILERNPGLLCKGVFTHFATADEKDRSYF 179

Query: 176 SVQLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKS 229
            +Q ERF+ LI+    K +    A+S+  L      F   R G+ +YG            
Sbjct: 180 LMQFERFKELIAPLPWKQLMVHCANSAAGLRLKKGFFNAVRFGVGMYGLRPSAEITNEIP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +    T  + +  ++K   GE VSYG      +D  I    +GYADG+   L G    
Sbjct: 240 FRLHQAFTLNSTLTHVKKIHKGESVSYGATYTAEKDQWIGTVPVGYADGWLRKLQG---- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                    +  I G  + I G+I MD  M ++        G  + + G      I +D+
Sbjct: 296 --------TEVLINGKRLKIAGRICMDQFMVELDKEYP--PGSRVTLIGRQKDDCITVDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY++   I +R  + +
Sbjct: 346 IASRLETINYEVTCTISSRVPRMF 369


>gi|114564506|ref|YP_752020.1| alanine racemase [Shewanella frigidimarina NCIMB 400]
 gi|122298735|sp|Q07XT3|ALR_SHEFN RecName: Full=Alanine racemase
 gi|114335799|gb|ABI73181.1| alanine racemase [Shewanella frigidimarina NCIMB 400]
          Length = 372

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 100/377 (26%), Positives = 179/377 (47%), Gaps = 29/377 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPAL-----------Y 53
            F R +I   AL++N   +  ++ N++  AVVK N YG G   +A  +           Y
Sbjct: 3   PFPRAEISRYALQSNLAQLRLIAPNSKIMAVVKANGYGHGLLNVAECVGLLNYVESVCKY 62

Query: 54  NAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFY 112
           + G   F +  +EE ++LR    + ++ +L G         +   N+  V+    QL   
Sbjct: 63  HGGADGFGLARLEEALQLREGGVKGKLLLLEGFFRQSDLPTLVSHNIDTVVHHESQLQML 122

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPS 171
             + +        +++DTG +R+G SL++            ++ +   +++H ACAD+P 
Sbjct: 123 ETI-ALDKPVTVWIKIDTGMHRIGFSLEQFNSIYQRLLACPQVAKPIHLMTHFACADEPD 181

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--- 228
           + +   Q+  F   +S  +G + +LA+S+G L  P       RPGI+LYG +  +     
Sbjct: 182 NPLTQTQMNAFEQQVSGLEG-DRTLANSAGTLFWPTSQADWVRPGIALYGVSPVVGDRGV 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +H +   +   + +I +R+  AG+ V YG      +D+ + V AIGY DGYP        
Sbjct: 241 NHRLIPAMELVSNLIAVREHKAGDSVGYGASWTAKKDTRLGVVAIGYGDGYPR------- 293

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348
               +   G   +I G  VPI+G+++MDM   D+       VGD +Q++G  + +++VA 
Sbjct: 294 ----NAPEGTPVWINGRRVPIVGRVSMDMLTVDLGADAQDNVGDSVQLWGKALAVEEVAE 349

Query: 349 ASGTTNYDLLVRIGTRY 365
             GT  Y+L+ ++  R 
Sbjct: 350 HIGTIAYELVTKLTPRV 366


>gi|118477525|ref|YP_894676.1| alanine racemase [Bacillus thuringiensis str. Al Hakam]
 gi|228927166|ref|ZP_04090229.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229091092|ref|ZP_04222315.1| Alanine racemase [Bacillus cereus Rock3-42]
 gi|229121649|ref|ZP_04250874.1| Alanine racemase [Bacillus cereus 95/8201]
 gi|229184316|ref|ZP_04311523.1| Alanine racemase [Bacillus cereus BGSC 6E1]
 gi|254720986|ref|ZP_05182777.1| alanine racemase [Bacillus anthracis str. A1055]
 gi|300118202|ref|ZP_07055950.1| alanine racemase [Bacillus cereus SJ1]
 gi|118416750|gb|ABK85169.1| alanine racemase [Bacillus thuringiensis str. Al Hakam]
 gi|228599112|gb|EEK56725.1| Alanine racemase [Bacillus cereus BGSC 6E1]
 gi|228661869|gb|EEL17484.1| Alanine racemase [Bacillus cereus 95/8201]
 gi|228692223|gb|EEL45959.1| Alanine racemase [Bacillus cereus Rock3-42]
 gi|228832492|gb|EEM78066.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|298724513|gb|EFI65207.1| alanine racemase [Bacillus cereus SJ1]
          Length = 408

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    +  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG       +H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|126175832|ref|YP_001051981.1| alanine racemase [Shewanella baltica OS155]
 gi|254802375|sp|A3D8P9|ALR_SHEB5 RecName: Full=Alanine racemase
 gi|125999037|gb|ABN63112.1| alanine racemase [Shewanella baltica OS155]
          Length = 358

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 175/368 (47%), Gaps = 20/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N F R +I  +AL+ N  ++   +  +R  AVVK N YG G   +A  L +     F + 
Sbjct: 2   NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVANCLVS--ADGFGLA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++E ++LR     AR+ +L G     +  ++   ++  V+    QL    + +      
Sbjct: 60  RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTV-LSKPV 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG + ++             + +   +++H ACAD+P +   SVQ+  
Sbjct: 119 TVWLKVDSGMHRLGFTPEQFSTVYDRLMACPNVAKPIHLMTHFACADEPDNTYTSVQMAA 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           F +L +   G   +LA+S+G L  P       RPGI+LYG +        +H +   +  
Sbjct: 179 FNSLTAGLPGF-RTLANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGANHGLVPAMEL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +++I +R   A + V YG      +D+ + V AIGY DGYP            +   G 
Sbjct: 238 VSQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYPR-----------NAPEGT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G  VPI+G+++MDM   D+      +VGD   ++G  + +++VA   GT  Y+L+
Sbjct: 287 PVWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAEHIGTIAYELV 346

Query: 359 VRIGTRYA 366
            ++  R A
Sbjct: 347 TKLTPRVA 354


>gi|297201785|ref|ZP_06919182.1| alanine racemase [Streptomyces sviceus ATCC 29083]
 gi|297147954|gb|EFH28798.1| alanine racemase [Streptomyces sviceus ATCC 29083]
          Length = 389

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/383 (27%), Positives = 165/383 (43%), Gaps = 30/383 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R +IDL AL+ N  ++ A +  A   AVVK +AYG G    A A   AG +     + 
Sbjct: 13  RARAEIDLAALRANVRALRARASGAALMAVVKSDAYGHGAVPCARAAVEAGARWLGTATP 72

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           EE + LR      RI        G  +   + +L   +S +       +     GV    
Sbjct: 73  EEALALRKAGLPGRIMCWLWTPGGPWREAIEADLDVSVSGMWALRELVAAAREAGVPARV 132

Query: 125 ALQVDTGFNRLGLSL-QEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLE 180
            L+ DTG  R G    ++  +    +   +   L +++ + SH ACAD+P     + QL 
Sbjct: 133 QLKADTGLGRNGCQPGEDWAELVAEALRAQSEGLLRVTGLWSHFACADEPGHPSITAQLT 192

Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--- 232
            FR +++H +G         +A+S   L  P  HF L R GI+ YG +       P    
Sbjct: 193 LFREMLAHAEGRGVRPEVRHIANSPATLTLPESHFDLVRTGIATYGISPSPELGVPGDFG 252

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V+T  A I L+++   G  VSYG +     D+ + +  +GYADG P   SG      
Sbjct: 253 LRPVMTLSASIALVKRVPGGHGVSYGHRYVTPGDTTLGLVPVGYADGIPRHASG------ 306

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   + G    + G+I MD  + D+        G    +FGP    +   +D A
Sbjct: 307 -----AGPVLVDGKWRTVAGRIAMDQFVVDLGGDEP-PTGTRAVLFGPGDRGEPTAEDWA 360

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
            A+GT  Y+++ RIGTR  + Y 
Sbjct: 361 QAAGTIAYEIVTRIGTRVPRVYV 383


>gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Chitinophaga pinensis DSM 2588]
 gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588]
          Length = 834

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 165/370 (44%), Gaps = 20/370 (5%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L+A+ +N     +L     +  A+VK  +YG G  +IA  L   GV    V   +E
Sbjct: 473 LEINLSAVTHNVKQYQSLLKPGTKLMAMVKAFSYGSGSFEIANLLQFHGVDYLAVAYADE 532

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL--MSCGVSHPYA 125
           GV LR       I V+    P     I   NL P I S+  L  + +   ++     P  
Sbjct: 533 GVDLRRTGITMPIMVMNP-EPSSFDAILQWNLEPEIYSLHLLKQFEEEVQLAGKTGFPVH 591

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG   ++  +      +    +++ + SHLA ++DP+       Q + F  
Sbjct: 592 IKLDTGMHRLGFEKKDIPELARLLSDNIYLKVNSVFSHLAASEDPAMDAFTKQQGQLFFE 651

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           +    +      +   +A+S+ I   P+    + R GI +YG          ++   T +
Sbjct: 652 MSHELQKALGYTVIRHIANSAAIERHPDLQLDMVRLGIGMYGIDSANKIQDQLRPASTLK 711

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +  ++    G+ V YG +      S+ A   IGYADGYP  LS             GK
Sbjct: 712 TTVAQVKHLSTGDTVGYGAKWVAKGPSVTATVRIGYADGYPRRLSN----------GKGK 761

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             ++G + P+ G + MDM M D+T+   +  GD + +FG ++ +  V+  + T  Y++L 
Sbjct: 762 MLVRGQLAPVAGVVAMDMLMLDVTNIPEVAEGDEVIVFGNELPVQQVSAWADTIPYEILT 821

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 822 GISQRVKRVY 831


>gi|90414458|ref|ZP_01222434.1| alanine racemase [Photobacterium profundum 3TCK]
 gi|90324463|gb|EAS41022.1| alanine racemase [Photobacterium profundum 3TCK]
          Length = 359

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 176/366 (48%), Gaps = 22/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL +N   ++  + N++  AVVK N YG G   +A +L +     F V  +EE + 
Sbjct: 8   INTDALTHNIRQLHLQAPNSKLLAVVKANGYGHGLLHVAKSLPD--ADAFGVARIEEALT 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G +      II   N+  V+ S+ QL                L++D
Sbjct: 66  LRAGGVVKPILLLEGFYGASDLPIIVTNNIHTVVHSIEQLEALESA-ELDNQAVVWLKID 124

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++  DF         + +    +SH  CADD +S+V + Q+  F +L   
Sbjct: 125 TGMHRLGVRPEQLDDFVQRLHACDNVAKPLRYMSHFGCADDLTSNVTNQQINTFLSLTEG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-----KSHPMQTVVTAEARII 243
             G E SLA+S+GIL  P+   +  RPGI +YG +  I      ++  +Q V+T  + +I
Sbjct: 185 CSG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFIEPDRSAEAFNLQPVMTLTSSLI 243

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R    GE V YGG     RD+ + V AIGY DGYP T              G    + 
Sbjct: 244 AVRDVKEGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVLVN 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G +VP+ G+++MDM   D+  +   +VGD   ++G  +  + VA   GT  Y+L+ ++ +
Sbjct: 293 GRIVPMAGRVSMDMLTVDLGPNAQDKVGDEAVLWGNGLPAEVVAEHIGTIAYELVTKLTS 352

Query: 364 RYAKFY 369
           R    Y
Sbjct: 353 RVDMTY 358


>gi|145635716|ref|ZP_01791411.1| alanine racemase [Haemophilus influenzae PittAA]
 gi|145639886|ref|ZP_01795486.1| alanine racemase [Haemophilus influenzae PittII]
 gi|229845613|ref|ZP_04465739.1| alanine racemase [Haemophilus influenzae 6P18H1]
 gi|145267039|gb|EDK07048.1| alanine racemase [Haemophilus influenzae PittAA]
 gi|145270977|gb|EDK10894.1| alanine racemase [Haemophilus influenzae PittII]
 gi|229811480|gb|EEP47183.1| alanine racemase [Haemophilus influenzae 6P18H1]
 gi|309751068|gb|ADO81052.1| Alanine racemase [Haemophilus influenzae R2866]
          Length = 360

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 175/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRA-NLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240
            ++    +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSVTKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPI 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       +GD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLIGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|30262102|ref|NP_844479.1| alanine racemase [Bacillus anthracis str. Ames]
 gi|47527372|ref|YP_018721.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184943|ref|YP_028195.1| alanine racemase [Bacillus anthracis str. Sterne]
 gi|165870205|ref|ZP_02214861.1| alanine racemase [Bacillus anthracis str. A0488]
 gi|167633047|ref|ZP_02391373.1| alanine racemase [Bacillus anthracis str. A0442]
 gi|167638340|ref|ZP_02396617.1| alanine racemase [Bacillus anthracis str. A0193]
 gi|170686461|ref|ZP_02877682.1| alanine racemase [Bacillus anthracis str. A0465]
 gi|170706003|ref|ZP_02896465.1| alanine racemase [Bacillus anthracis str. A0389]
 gi|177650850|ref|ZP_02933747.1| alanine racemase [Bacillus anthracis str. A0174]
 gi|190568000|ref|ZP_03020911.1| alanine racemase [Bacillus anthracis Tsiankovskii-I]
 gi|227815101|ref|YP_002815110.1| alanine racemase [Bacillus anthracis str. CDC 684]
 gi|229604370|ref|YP_002866463.1| alanine racemase [Bacillus anthracis str. A0248]
 gi|254684669|ref|ZP_05148529.1| alanine racemase [Bacillus anthracis str. CNEVA-9066]
 gi|254737113|ref|ZP_05194817.1| alanine racemase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743702|ref|ZP_05201387.1| alanine racemase [Bacillus anthracis str. Kruger B]
 gi|30256728|gb|AAP25965.1| alanine racemase [Bacillus anthracis str. Ames]
 gi|47502520|gb|AAT31196.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178870|gb|AAT54246.1| alanine racemase [Bacillus anthracis str. Sterne]
 gi|164714093|gb|EDR19614.1| alanine racemase [Bacillus anthracis str. A0488]
 gi|167513641|gb|EDR89010.1| alanine racemase [Bacillus anthracis str. A0193]
 gi|167531859|gb|EDR94524.1| alanine racemase [Bacillus anthracis str. A0442]
 gi|170129005|gb|EDS97870.1| alanine racemase [Bacillus anthracis str. A0389]
 gi|170669537|gb|EDT20279.1| alanine racemase [Bacillus anthracis str. A0465]
 gi|172083311|gb|EDT68372.1| alanine racemase [Bacillus anthracis str. A0174]
 gi|190561055|gb|EDV15029.1| alanine racemase [Bacillus anthracis Tsiankovskii-I]
 gi|227006748|gb|ACP16491.1| alanine racemase [Bacillus anthracis str. CDC 684]
 gi|229268778|gb|ACQ50415.1| alanine racemase [Bacillus anthracis str. A0248]
          Length = 391

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    +  V+
Sbjct: 11  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 71  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG       +H +   Q  ++
Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMEPSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 360 NYEVTCMLDRRIPRVY 375


>gi|302872340|ref|YP_003840976.1| alanine racemase [Caldicellulosiruptor obsidiansis OB47]
 gi|302575199|gb|ADL42990.1| alanine racemase [Caldicellulosiruptor obsidiansis OB47]
          Length = 390

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 93/379 (24%), Positives = 161/379 (42%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            +  +I+L  L  N  ++   +    +  AVVK +AYG G  +I+  L   GV    V  
Sbjct: 9   RVWAEINLDNLLYNLENIKKKILPQTKIMAVVKADAYGHGAVEISRVLVKNGVSMLAVAI 68

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           ++E ++LR +     I +L        + + +  +   + +  Q  + SK     G    
Sbjct: 69  IDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSKAAQKIGKKAK 128

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLER 181
             ++VDTG  R+G    +++++   N       +L  I SH  +  D  S      Q  +
Sbjct: 129 IHIKVDTGMGRIGFLCCEQSVNTILNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFIK 188

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F   +              +A+SS  +  P Y   + R G+ LYG      + +   ++ 
Sbjct: 189 FENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHINLKP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +AR+I +++   G  +SY  +   TR S IA   IGYADG+    S          
Sbjct: 249 VMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------- 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
                  IKG    ++G I MD  M D+TD   +++GD + I G     +I  D +A   
Sbjct: 302 ----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQI 357

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++     R  + +
Sbjct: 358 GTINYEVVCSFSKRIPRVF 376


>gi|330890950|gb|EGH23611.1| alanine racemase [Pseudomonas syringae pv. mori str. 301020]
          Length = 357

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 165/370 (44%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG    A  +K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARAFIDLQALRHNYQLAREHSGGKALAG-IKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + N   V+ S  QL    +         
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELALIVEHNFWTVVHSTWQLEAIEQAQ-LAKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH A AD+ +S  +  Q   F 
Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
           +        E SL +S  +L  P+     +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 SFRKGLAA-EISLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQPHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|88858927|ref|ZP_01133568.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           tunicata D2]
 gi|88819153|gb|EAR28967.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           tunicata D2]
          Length = 358

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/372 (29%), Positives = 174/372 (46%), Gaps = 24/372 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                +I L AL +N+  +   +  ++  AV+K NAYG G   IA  L +     F V  
Sbjct: 2   RLATAEISLAALDHNFKRVKEFAPASQIMAVLKANAYGHGLVAIAKRLSS--ADAFAVAR 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-- 121
           ++E + LR       I +L G   P    I+   N   +I    Q      LM+C +   
Sbjct: 60  IDEALALRAGGLVKPIVLLEGFFEPQDLPILLANNFQTIIHHQSQ---LDALMNCDLDGM 116

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLE 180
               L++DTG +RLG+S ++           +    ++ +++H ACADD S+     QL 
Sbjct: 117 LTTWLKIDTGMHRLGISPEQFSKAYQTLSQCEHVNPNIRLMTHFACADDLSNGKTQQQLA 176

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237
            F  LI+  K  +  LA+S+ I+  P+ H    RPG+ +YG +  +NK    H +  V+ 
Sbjct: 177 VFSELIADKKQ-QTCLANSAAIIGWPDSHGDWVRPGLMMYGVSPMLNKVGADHGLAPVMR 235

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + R+I +R    GE V YG       D++I V A+GY DGYP                G
Sbjct: 236 LKTRLISLRVVKKGEAVGYGSTWTCPIDTIIGVVAMGYGDGYPRHA-----------PSG 284

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VP++G+++MDM   D+      ++GD + ++GP++ ++ VA  + T  Y+L
Sbjct: 285 TPVMVNGKQVPLVGRVSMDMITVDLGLETDAKIGDQVILWGPELPVEVVAQCADTIPYEL 344

Query: 358 LVRIGTRYAKFY 369
           L  I  R    Y
Sbjct: 345 LCNITPRVDYHY 356


>gi|50122586|ref|YP_051753.1| alanine racemase [Pectobacterium atrosepticum SCRI1043]
 gi|123614469|sp|Q3V7N2|ALR_ERWCT RecName: Full=Alanine racemase
 gi|49613112|emb|CAG76563.1| alanine racemase, biosynthetic [Pectobacterium atrosepticum
           SCRI1043]
          Length = 360

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 171/375 (45%), Gaps = 23/375 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +       I+  AL++N   +  L+  ++  AVVK NAYG G  + A    +     +
Sbjct: 1   MKT---ATAVINRRALRHNLQRIRQLAPGSQIVAVVKANAYGHGMIESAHTFCD--ADCY 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  + E + LR       I +L G     +  ++ +  L   + S+ QL    +  +  
Sbjct: 56  GVARLSEALALRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHSLEQLAALEQA-TLP 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 +++DTG +RLG+  + A  F       + + Q   I+SH   AD+P +     Q
Sbjct: 115 QPIRVWMKLDTGMHRLGVLPEHADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQ 174

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235
           L  F        G + S+A+S GILL P  H    RPGI LYG +   N+       Q  
Sbjct: 175 LACFDAFTQGKPGAQ-SIAASGGILLWPQAHRDRVRPGIILYGVSPLDNEDAAHFGFQPA 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + +I +R+  AGE V YGG     RD+ + V A+GY DGYP               
Sbjct: 234 MTFTSHLIAVREHKAGETVGYGGTWTSPRDTRLGVVAVGYGDGYPRCA-----------P 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    I G  VP+ G+++MDM   D+      +VGD + ++GP + ++ +A  +G + Y
Sbjct: 283 AGTPVLINGREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGPTLSVERIAAHTGASAY 342

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ R+  R A  Y 
Sbjct: 343 ELITRLTQRTALEYV 357


>gi|257481781|ref|ZP_05635822.1| alanine racemase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331009415|gb|EGH89471.1| alanine racemase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 357

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 166/370 (44%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AV+K +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A + +L G     E  +I + N   V+ S  QL    +         
Sbjct: 60  IEEALELRAAGIHAPVLLLEGFFEADELALIVEHNFWAVVHSTWQLEAIEQAQ-LARPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH A AD+ +S  +  Q   F 
Sbjct: 119 VWLKIDTGMHRVGLYPHEYQSAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
           +        E SL +S  +L  P+     +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 SFRKGLVA-ETSLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG      R   I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+T      +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQASRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATLAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|228914698|ref|ZP_04078307.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228845017|gb|EEM90059.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 408

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    +  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG       +H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|85858827|ref|YP_461029.1| alanine racemase [Syntrophus aciditrophicus SB]
 gi|85721918|gb|ABC76861.1| alanine racemase [Syntrophus aciditrophicus SB]
          Length = 661

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 171/375 (45%), Gaps = 25/375 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +++DL +   NW  +  L G A R   VVK +AYG G  +I+      G     V + +
Sbjct: 12  WVEVDLDSFTWNWAELRRLVGPAVRVLQVVKADAYGHGAIEISHTALKNGAACLGVANAD 71

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPYA 125
           EGV+LR+    A I +L     G+ + I    L P +S  +    F   L   GV+ P  
Sbjct: 72  EGVQLRVSGITAPIIILSPSTGGEIREIIKYGLTPSLSDLLFASEFQRHLARAGVTSPVH 131

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG  R G+  +EA     N F      +  I +HLA + +     N  Q   FR L
Sbjct: 132 IEIDTGMGRGGMLCEEAPAIIRNIFGLPNIAVEGIFTHLASS-EVCVDYNEQQWSLFREL 190

Query: 186 ISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTA 238
                  GI      +A+S  IL  P +H  + RPG+  YG            ++ V++ 
Sbjct: 191 TDRLNAMGISIPIKHMANSGAILNYPRFHLDMVRPGLMSYGIHPAPSTEDRADLRPVMSF 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           + R++L+++  AG  + Y       R S IA   +GY DGY + LS             G
Sbjct: 251 KTRVVLLKEFPAGASIGYNRTYVTERPSRIATLPVGYGDGYGVILSNQ-----------G 299

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +  I+G   P++G+I+MDMT  D++      +GD + + G      I  +D+A+   T +
Sbjct: 300 EVLIRGRRAPVVGRISMDMTTVDVSAIPDCHIGDEVVLMGRQGEEVISANDIAVRVRTIS 359

Query: 355 YDLLVRIGTRYAKFY 369
           YD+L  +G R  + +
Sbjct: 360 YDILCALGKRAPRIF 374


>gi|153816433|ref|ZP_01969101.1| hypothetical protein RUMTOR_02686 [Ruminococcus torques ATCC 27756]
 gi|145846221|gb|EDK23139.1| hypothetical protein RUMTOR_02686 [Ruminococcus torques ATCC 27756]
          Length = 408

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 163/386 (42%), Gaps = 27/386 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M  +  +  +IDL A+  N   M   +   AR  AV+K + YG G   IA      + V 
Sbjct: 26  MDQHNRVCAQIDLDAIAYNMEQMKDQIGKEARLIAVIKTDGYGHGAVPIARMFETFSYVW 85

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMS 117
            + V  +EE V LR    +  I VL  + P Q + +    +   + +         + + 
Sbjct: 86  GYAVACIEEAVSLRKEGIKKPILVLGCVFPDQYETMIKNEIRAAVYTKEMAEGMSDEAVR 145

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +  + +++DTG  R+G  +  E+++            +  + +H A AD+       
Sbjct: 146 QGKNAYFHIKIDTGMGRIGFPVNSESVNLIEEISKLPNIHMEGLFTHFAKADEKEKSYTL 205

Query: 177 VQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            Q ERF  +    +     +      +S+GI+  PN    L R GIS YG          
Sbjct: 206 KQHERFLWMKEQLEKRNVDITYYDCDNSAGIIDFPNLKHDLARAGISTYGMYPSDEVQKS 265

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++  ++  + I  +++  AG  +SYGG         IA   +GY DGYP +LS    
Sbjct: 266 NVHLKPALSLISHITFVKEVEAGTPISYGGTFVAPEKMKIATIPVGYGDGYPRSLSN--- 322

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G    I+G++ MD  M D+TD       D + + G D    I ++
Sbjct: 323 --------KGSVLIRGKRAKIVGRVCMDQFMVDVTDIPGAAFMDRVVLIGKDGKDEITVE 374

Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370
           +++  SG  NY+ +  +G R  + YT
Sbjct: 375 ELSKLSGRFNYEFVCCLGKRIPRVYT 400


>gi|150391836|ref|YP_001321885.1| alanine racemase [Alkaliphilus metalliredigens QYMF]
 gi|149951698|gb|ABR50226.1| alanine racemase [Alkaliphilus metalliredigens QYMF]
          Length = 391

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 100/381 (26%), Positives = 165/381 (43%), Gaps = 28/381 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +I+L  LK+N   +   ++ +    AVVK N YG G   IA  L + G     V 
Sbjct: 8   RPTWAEINLDHLKHNIREVKKVINKDTLLCAVVKANGYGHGVMTIAKTLLDHGADRLAVA 67

Query: 64  SVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
           ++ E ++LR        I VL      Q ++I D N+I  I +  Q    +K+      S
Sbjct: 68  TLSEAIELRQGGYQDIPILVLGYTPETQGQVILDYNVIQTIYTYEQAKALAKIGKEQKKS 127

Query: 122 HPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L++DTG +RLG +  +  ++        +   +  I +H A AD+ +      Q  
Sbjct: 128 MTIHLKIDTGMSRLGFNCSQKTIEEIKQIIELEYINVEGIYTHFAVADEKNKDYTKFQFN 187

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232
            F  L    K          +++S+ I+  P+ +  + R GI LYG     +   ++  +
Sbjct: 188 CFMELTEELKKEGYQIPIRHVSNSAAIIDLPDMNLDMVRAGIMLYGLYPSPDVNHEAVQL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+  + R+  ++  L  + VSYG   K   +  I    IGYADG+   L+        
Sbjct: 248 KQVMELKTRVAHVKNVLPQQGVSYGLTYKTKGEEKIITLPIGYADGFTRMLT-------- 299

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVAL 348
                 +  +KG   PI+G+I MD  M D T    IE GD + +F  D      +DD+A 
Sbjct: 300 ---DKAELILKGEKRPIVGRICMDQCMADATGI-EIEQGDVVTLFSNDPASGCSIDDIAR 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY+++  +G R  + Y
Sbjct: 356 KLNTINYEIVCMVGRRVPRAY 376


>gi|254751429|ref|ZP_05203466.1| alanine racemase [Bacillus anthracis str. Vollum]
 gi|254758301|ref|ZP_05210328.1| alanine racemase [Bacillus anthracis str. Australia 94]
          Length = 408

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    +  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG       +H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMEPSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|170760162|ref|YP_001787063.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407151|gb|ACA55562.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
          Length = 389

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 161/384 (41%), Gaps = 27/384 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            ++  +  +++L  L  N  ++          AVVK N YG G   IA  L   G     
Sbjct: 3   RNHRPVWEEVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLS 62

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V  + E  +LR       I +L    P   + I D N+ PV+ S       SK  S    
Sbjct: 63  VACLSEATELRKGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDYANQLSKAASLKNR 122

Query: 122 H-PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG     E+L+      +    ++  + SH + +D+     +  Q 
Sbjct: 123 IVKTHIAVDTGMGRLGFDPTVESLEEIKRIQDLSNIKIEGLCSHFSSSDEKDKSYSEYQF 182

Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231
           + F+        +        +++S+ I+  P+ +    R GI LYG    +    ++  
Sbjct: 183 KIFQNFRKKLIEMNMRIPIHHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVNKENLH 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T +A I+ I+   +G  V Y  + K  R S IA+  +GY DGY   LS       
Sbjct: 243 IKQVMTLKANIVHIKTIDSGRYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345
                 GK  I G   PI+G I MD  M D+TD   ++VGD + I G D         +D
Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAED 351

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   G T+ +++  I  R  + Y
Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375


>gi|166367623|ref|YP_001659896.1| alanine racemase [Microcystis aeruginosa NIES-843]
 gi|166089996|dbj|BAG04704.1| alanine racemase [Microcystis aeruginosa NIES-843]
          Length = 397

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 182/377 (48%), Gaps = 25/377 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              ++ID +AL+ N   + AL +      AV+K +AYG G  K+A ++  AG Q   + +
Sbjct: 27  RAWVEIDRSALQQNVRKVKALLAPKTELIAVIKADAYGHGAVKVANSVLEAGAQSLAIAT 86

Query: 65  VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
           + EG++LR     A I +L  +  P +   +    L P +  + Q+  ++ +M       
Sbjct: 87  IGEGIELREAGIVAPIMILGAVNTPEEVAALAHWQLQPTLVQIEQVQIFASVMRRLEQRL 146

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P  +++DTG +RLG   Q    F          +++ I SH A ADDP+  +  +Q +RF
Sbjct: 147 PVHIKLDTGMSRLGTQWQNGTKFVEQVLEAPNLKIASIYSHFATADDPNPEIMQLQRQRF 206

Query: 183 RTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235
           +  I+    KG       LA+S+  L   + H+   R G++LYG      +    P+Q V
Sbjct: 207 QQAIAELRSKGYHPPCLHLANSAATLSDRSLHYDRVRVGLALYGLYPADHLTDKVPLQPV 266

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +ARI  ++   AG  VSYG Q    +D+ IAV  IGYADG P  LS           
Sbjct: 267 LQVKARIAQVKTIAAGSGVSYGHQYIAAKDTRIAVVGIGYADGIPRNLSNRL-------- 318

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              K  ++G +VP +G ITMD  M D+++   ++ G+ + + G D    I  DD A   G
Sbjct: 319 ---KVSLRGRLVPQIGAITMDQLMIDVSEIPEVKTGEIVTLIGKDGPQCITADDWARDLG 375

Query: 352 TTNYDLLVRIGTRYAKF 368
           T ++++L     R  + 
Sbjct: 376 TISWEILCGFKHRLPRI 392


>gi|167625575|ref|YP_001675869.1| alanine racemase [Shewanella halifaxensis HAW-EB4]
 gi|167355597|gb|ABZ78210.1| alanine racemase [Shewanella halifaxensis HAW-EB4]
          Length = 358

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 172/367 (46%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I   ALKNN   ++ L+ +++  AVVK N YG G   +A  L N     F +  
Sbjct: 3   PFPRAEISRHALKNNLARLHELAPSSKVMAVVKANGYGHGLLNVAQCLDN--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +A++ +L G     + + + + ++  V+    Q+    +         
Sbjct: 61  LEEALALRAGGVKAKLLLLEGFFRAADLVTLVEHDIETVVHHESQIEMLEQA-ELNKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++D+G +RLG    E             + +   +++H ACAD+PS+   + QL  F
Sbjct: 120 VWMKIDSGMHRLGFVPDEFKVVYQRLLDCDNVAKPINLMTHFACADEPSNPYTAEQLAVF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239
             L     G + +LA+S+G L          RPGI+LYG +  +      H +   +   
Sbjct: 180 EALTKDLPG-DRTLANSAGALFWQQSQANWIRPGIALYGVSPVVGDLGTKHGLIPAMELV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I IR   AG+ V Y       +D+ + V AIGY DGYP            +  LG  
Sbjct: 239 SQLIAIRDHKAGQPVGYASYWTADKDTKLGVVAIGYGDGYPR-----------NAPLGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G + PI+G+++MDM   D+       VGD   ++G ++ +++VA   GT  Y+L+ 
Sbjct: 288 VLINGRLAPIVGRVSMDMLTVDLGADAKDSVGDKAVLWGKELPVEEVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|319776471|ref|YP_004138959.1| alanine racemase [Haemophilus influenzae F3047]
 gi|329123976|ref|ZP_08252524.1| alanine racemase [Haemophilus aegyptius ATCC 11116]
 gi|317451062|emb|CBY87295.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus
           influenzae F3047]
 gi|327467720|gb|EGF13215.1| alanine racemase [Haemophilus aegyptius ATCC 11116]
          Length = 360

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 175/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L  + V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRA-NLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGIALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQIYRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240
            +     +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP             V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|325578240|ref|ZP_08148375.1| alanine racemase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159976|gb|EGC72105.1| alanine racemase [Haemophilus parainfluenzae ATCC 33392]
          Length = 360

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 176/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK+N   +   + +++  AVVK NAYG G   ++ AL +  V  F V  
Sbjct: 4   KPATAKISSLALKHNLQVIKEKAPHSKIIAVVKANAYGHGVVFVSSALESM-VDCFAVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    ++  II   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALSLRSNGIIKPILLLEGFFDEKDLPIIAVNNIETVVHNREQLEALKRA-AVPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG+SL E   F          Q     +SH + AD+  S    VQL+RF
Sbjct: 122 VWLKIDTGMHRLGVSLDEVDYFYQELKKLPQIQPHLGFVSHFSRADELDSDYTQVQLDRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240
                  KG E ++A+S GIL  P  H    RPGI +YG +    +     +  V+   +
Sbjct: 182 LQATKD-KGGERTIAASGGILFWPEAHLDCIRPGIIMYGISPTDTVGAEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ +R+   GE V YGG     +D+ I V AIGY DGYP             V  G   
Sbjct: 241 SLLAVREHKKGEPVGYGGIWTSPKDTKIGVVAIGYGDGYPR-----------DVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VP +G+++MDM   D+      +VGD + ++G ++ ++ VA  SG  +Y+L+ +
Sbjct: 290 YLNGRIVPSVGRVSMDMLTVDLGADSQDKVGDEVILWGKELPIETVAKYSGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|65319386|ref|ZP_00392345.1| COG0787: Alanine racemase [Bacillus anthracis str. A2012]
          Length = 408

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    +  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLXKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG       +H +   Q  ++
Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMEPSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|330977319|gb|EGH77272.1| alanine racemase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 357

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 171/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL +     F V  
Sbjct: 2   RPARAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQALESQ-ADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ +  QL    +    G    
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELALIVEHDLWTVVHATWQLEAIEQAR-LGKPIT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH + AD+ +S  +  QL  F 
Sbjct: 119 VWLKLDTGMHRVGLHPHEYQAGYQRLLATGKVARIVLMSHSSRADELNSGCSDEQLAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
           T        E SL +S  +L  P      +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 TFRKGLAA-ETSLKTSPAVLGWPQIPSDWSRPGIMLYGATPFDQVHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+  AGE V YG      R S I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPAGEPVGYGATFVCDRPSRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  + T  Y++   
Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTDVPQAGLGSRVELWGKQVLASEVAQRAETIPYEIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-RRVPRIYS 355


>gi|317500186|ref|ZP_07958418.1| alanine racemase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898401|gb|EFV20440.1| alanine racemase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 399

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 163/386 (42%), Gaps = 27/386 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M  +  +  +IDL A+  N   M   +   AR  AV+K + YG G   IA      + V 
Sbjct: 17  MDQHNRVCAQIDLDAIAYNMEQMKDQIGKEARLIAVIKTDGYGHGAVPIARMFETFSYVW 76

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMS 117
            + V  +EE V LR    +  I VL  + P Q + +    +   + +         + + 
Sbjct: 77  GYAVACIEEAVSLRKEGIKKPILVLGCVFPDQYETMIKNEIRAAVYTKEMAEGMSDEAVR 136

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +  + +++DTG  R+G  +  E+++            +  + +H A AD+       
Sbjct: 137 QGKNAYFHIKIDTGMGRIGFPVNSESVNLIEEISKLPNIHMEGLFTHFAKADEKEKSYTL 196

Query: 177 VQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            Q ERF  +    +     +      +S+GI+  PN    L R GIS YG          
Sbjct: 197 KQHERFLWMKEQLEKRNVDITYYDCDNSAGIIDFPNLKHDLARAGISTYGMYPSDEVQKS 256

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++  ++  + I  +++  AG  +SYGG         IA   +GY DGYP +LS    
Sbjct: 257 NVHLKPALSLISHITFVKEVEAGTPISYGGTFVAPEKMKIATIPVGYGDGYPRSLSN--- 313

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G    I+G++ MD  M D+TD       D + + G D    I ++
Sbjct: 314 --------KGSVLIRGKRAKIVGRVCMDQFMVDVTDIPGAAFMDRVVLIGKDGKDEITVE 365

Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370
           +++  SG  NY+ +  +G R  + YT
Sbjct: 366 ELSKLSGRFNYEFVCCLGKRIPRVYT 391


>gi|123444026|ref|YP_001007996.1| alanine racemase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122090987|emb|CAL13870.1| alanine racemase (biosynthetic) [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 359

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/366 (28%), Positives = 179/366 (48%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRIAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  I   N +   + S+ QL    ++          ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFAAEDLPILAANCIETAVHSIEQLEAL-EVAELSAPIHVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       K + Q   I+SH + AD+P       QL+ F T +
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSACKNVIQPVNIMSHFSRADEPQVDTTRQQLDCFDTFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
           +   G + S+A+S GILL P  H    RPGI LYG +           ++  +  ++ +I
Sbjct: 183 ADKPGKQ-SIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFELKPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGEPVGYGGTWVSERDTRLGVVAIGYGDGYPRSA-----------PSGTPMWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+  + + +VGD + ++G ++ ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GREVGIVGRVSMDMISVDLGPNATDKVGDEVLLWGAELPVEKIAACTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|238789907|ref|ZP_04633687.1| Alanine racemase 1 [Yersinia frederiksenii ATCC 33641]
 gi|238721980|gb|EEQ13640.1| Alanine racemase 1 [Yersinia frederiksenii ATCC 33641]
          Length = 359

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 177/367 (48%), Gaps = 22/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  I+    +   + S+ QL       +        ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFTAEDLPILVANRIETAVHSIEQLEALEAA-TLSAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       + + Q   I+SH + AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSACRNVIQPVNIMSHFSRADEPKVETTRQQLDCFDTFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARI 242
               G + S+A+S GILL P  H    RPGI LYG +  +++ +         +  ++ +
Sbjct: 183 KDKPGKQ-SIAASGGILLWPEAHRDWVRPGIILYGVSP-MDEPYGSHFNLLPAMELKSSL 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V AIGY DGYP +              G   +I
Sbjct: 241 IAVREHKAGEPVGYGGTWVSKRDTRLGVVAIGYGDGYPRSA-----------PSGTPMWI 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  V I+G+++MDM   D+    + +VGD + ++G ++ ++ +A  +G + Y+L+ ++ 
Sbjct: 290 NGREVGIVGRVSMDMISVDLGPDATDKVGDEVLLWGAELPVEKIAARTGISAYELITKLT 349

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 350 SRVAMEY 356


>gi|296332832|ref|ZP_06875292.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673178|ref|YP_003864850.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150112|gb|EFG91001.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411422|gb|ADM36541.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 389

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/384 (27%), Positives = 168/384 (43%), Gaps = 30/384 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +  F R    +IDL+A+K N  +M    G +    AVVK NAYG G  + A A  +AG
Sbjct: 1   MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR    +A I VL  + P   +I  + +L     SV  L   ++ M
Sbjct: 61  ASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYAEIAAEYDLTLTGYSVEWLQEAARHM 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVN 175
             G S  + L+VDTG NRLG+  +E +       ++    +   + +H A AD+      
Sbjct: 121 KKG-SLHFHLKVDTGMNRLGVKTEEEVHHVMAILDRNPRLKCKGVFTHFATADEKERGYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229
            +Q ERF+ LI+    K +    A+S+  L      F   R GI +YG     +      
Sbjct: 180 LMQFERFKELIAPLPLKKMMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADITDEIP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +    T  + +  ++    GE VSYG +    +D+ I    +GYADG+   L      
Sbjct: 240 FELHPAFTLHSTLSHVKLIRKGESVSYGAEYTAEKDTWIGTVPVGYADGWLRKL------ 293

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                  G +  +KG  + I G+I MD  M ++        G  + + G      I +D+
Sbjct: 294 ------KGTEILVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY++   I +R  + +
Sbjct: 346 IAGRLETINYEVSCTISSRVPRMF 369


>gi|282901702|ref|ZP_06309618.1| Alanine racemase region protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193465|gb|EFA68446.1| Alanine racemase region protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 391

 Score =  392 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 177/381 (46%), Gaps = 27/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++   ++IDL AL NN   +   LS  ++  AVVK +AYG G   +A  +  AG     V
Sbjct: 14  SQRAWVEIDLGALSNNVKQLVGFLSPGSQLMAVVKADAYGHGAVTVATTVLAAGATWLGV 73

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118
            +V EG++LR    +A I +L   H P Q   I    L P + S  Q   +S L++    
Sbjct: 74  ATVTEGIQLREAGIKAPILILGATHTPEQIHAITSWQLEPTLCSPGQALIFSDLLNSIDY 133

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               P  +++DTG +RLG   Q+A +F           ++ + SH A AD P + +   Q
Sbjct: 134 NYELPVHIKLDTGMSRLGADWQQAGEFAQLVQGLPRLHIASVYSHFATADSPDTTIMEQQ 193

Query: 179 LERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
             RF+  I+  +  GI+     LA+S+  L     H+ + R G+++YG     ++ + +Q
Sbjct: 194 HGRFQQAIAQIRAMGIKIPSLHLANSAATLGNKELHYDMVRAGLAIYGLYPAAHQRNHLQ 253

Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
               +  +ARI  I+    G  VSYG +    R+  I V  IGYADG P +LS       
Sbjct: 254 LRPALQVKARITHIKTISEGTGVSYGHKFIAPREMRIGVVGIGYADGVPRSLSNQMD--- 310

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     ++G  V  +G ITMD  M DI+  + +E G+ + + G      I  DD A
Sbjct: 311 --------VLVQGQRVKQIGMITMDQLMIDISSLVEVEEGEIVTLLGEQGEENITADDWA 362

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
               T +++++     R  + 
Sbjct: 363 NQLNTISWEIICGFKDRLPRV 383


>gi|317050883|ref|YP_004111999.1| alanine racemase [Desulfurispirillum indicum S5]
 gi|316945967|gb|ADU65443.1| alanine racemase [Desulfurispirillum indicum S5]
          Length = 358

 Score =  392 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 176/367 (47%), Gaps = 23/367 (6%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +I L  +++N+  +   +G+ R   VVK +AYG G   +A  L + G   F V  V EG+
Sbjct: 7   EIHLPHIRHNFRLLQQRAGHTRIVGVVKADAYGHGDVPVALCLQSEGCTHFAVARVHEGI 66

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           KLR       I ++ G  P +   + + NL  V+          +++  G+S P  ++++
Sbjct: 67  KLRKAGIHGDILIMSGSFPNEFAALREFNLTTVVYCEEN---IEEMVREGISVPVHIKIN 123

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           TG NRLG        + + +  +    +  I++H+ACAD+P S     Q   F   +  Y
Sbjct: 124 TGMNRLGFRPDRLP-WVYRTLTEAGFAVRGIMTHMACADEPGSPTIGAQENLFYRSLEPY 182

Query: 190 --KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             +G+   L++S+GI    N    L RPGI LYGG    +K+  ++  +T + +I+ +++
Sbjct: 183 FQEGMLGHLSNSAGIFTLDNL-GSLARPGIMLYGGNPFADKTVDLRPAMTFKTKILQVKR 241

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE +SYG      R+ L+A  A GYADGY   LS              +  + G   
Sbjct: 242 VFPGEGISYGHSFVADREMLVATVAAGYADGYSRLLSN-----------KARVLVNGQYA 290

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGT 363
           P +G++ MDM+M D+T       GD + +FG      I   ++A   GT +Y++   I  
Sbjct: 291 PQVGRVCMDMSMVDVTHIQPAR-GDEVVLFGEQRGQCIYASELAELMGTIDYEVFCGISP 349

Query: 364 RYAKFYT 370
           R  + YT
Sbjct: 350 RVKRIYT 356


>gi|104784314|ref|YP_610812.1| alanine racemase [Pseudomonas entomophila L48]
 gi|122401266|sp|Q1I2V7|ALR_PSEE4 RecName: Full=Alanine racemase
 gi|95113301|emb|CAK18029.1| alanine racemase 2, PLP-binding, catabolic [Pseudomonas entomophila
           L48]
          Length = 357

 Score =  392 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/366 (28%), Positives = 170/366 (46%), Gaps = 20/366 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L+G A+  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPARALIDLQALRHNYRLARELTG-AKALAVVKADAYGHGAVRCALALETE-ADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ S+ QL    +         
Sbjct: 60  IEEALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEQ-TPVRKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+G+  ++  D              +++SH A AD+  +     Q+  F 
Sbjct: 119 IWLKMDTGMHRVGVHPKDYQDAYQRLLASGKVSRIVLMSHFARADELDAAATEQQVAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
                    E SL +S  +L  P+      RPGI LYG T       ++  +Q V+T ++
Sbjct: 179 AARQGLSA-ECSLRNSPAVLGWPSIKSDWVRPGIMLYGATPFEVAQAEAARLQPVMTLQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRELPAGEPVGYGAKFISPRPTRVGVVAMGYADGYPRQA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+T+     VG  ++++G  +   DVA+ +GT  Y +   
Sbjct: 287 VVAGKRTQLIGRVSMDMLCVDLTEVPEATVGSPVELWGKQVLASDVAMQAGTIPYQIFCN 346

Query: 361 IGTRYA 366
           +  R  
Sbjct: 347 L-KRVP 351


>gi|89896768|ref|YP_520255.1| hypothetical protein DSY4022 [Desulfitobacterium hafniense Y51]
 gi|219667399|ref|YP_002457834.1| alanine racemase [Desulfitobacterium hafniense DCB-2]
 gi|89336216|dbj|BAE85811.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537659|gb|ACL19398.1| alanine racemase [Desulfitobacterium hafniense DCB-2]
          Length = 370

 Score =  392 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 167/381 (43%), Gaps = 25/381 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +   +  +I+L AL+ N+  + AL+  +    +VK +AYG G  +   A Y  G + F
Sbjct: 1   MENRRPVWTEINLQALQRNYDRIQALT-ESEIMPIVKADAYGHGALQAVEAFYERGARRF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119
            V  + E ++LR   P  ++ ++  +     + +   ++I  +  + Q    +K     G
Sbjct: 60  GVALLNEALELRRAYPDIKVMLIGSLPEESIETVVKEDIICGVYQLDQAVILAKEAERQG 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 L+VDTG  R+G   ++  +            +  I +H A AD         QL
Sbjct: 120 KKAVIHLKVDTGMGRIGFREEDWEELF-GCTKLPGLYIEGIYTHFATADHSDLRFAREQL 178

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPM 232
            +F  +    K  GI       A+S  +L  P  H  + RPGI LYG      +     +
Sbjct: 179 RKFLVMCDKIKAQGIHIPIRHAANSGALLQLPEAHLDMVRPGIILYGLPPSQHVGNDLGL 238

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I  I+    GE +SYG   +    + +A   +GYADG    LS        
Sbjct: 239 EPVLSWKAKISHIKVVPQGETISYGRTFRTAYPTRVATIPLGYADGLRRNLSN------- 291

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G+  IKG    ++G++ MD TM D+T    ++VGD + + G D    I   ++A 
Sbjct: 292 ----KGEVLIKGRRTTMIGRVCMDQTMLDVTKIPEVQVGDVVTLLGMDGYERIDATEMAG 347

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY+++  I  R  + Y
Sbjct: 348 WLDTINYEIVCGISKRVPRVY 368


>gi|329928943|ref|ZP_08282753.1| alanine racemase [Paenibacillus sp. HGF5]
 gi|328937195|gb|EGG33622.1| alanine racemase [Paenibacillus sp. HGF5]
          Length = 395

 Score =  392 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 90/380 (23%), Positives = 168/380 (44%), Gaps = 30/380 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +I+L  L+ N+++   AL  + +  A VK NAYG G  ++A  L   G     V  ++E
Sbjct: 10  AEINLDHLRANYNAFREALPDHMKLLACVKANAYGHGAVEVARELQQLGAAYLSVAFLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
            ++LR       I VL    P   +I ++ ++   + S   L     L +         +
Sbjct: 70  ALELRQGGISVPILVLGYTPPEAVEIAYEYDVTITLFSSEVLQAIKALPVKPEKPLKVHI 129

Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++D+G  RLGL   ++A+ F   +F+     +  + +H A AD+ +      Q  RF+ +
Sbjct: 130 KIDSGMGRLGLLPGEDAISFIEEAFSLPQVVVEGMFTHFARADEENKDYTLGQYRRFQGV 189

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVT 237
               +  +  +      +S+  +  P   + + R GI LYG         K+  ++ V+T
Sbjct: 190 ADALRDKDYHIPIIHTGNSAAAIDTPELSYNMVRVGIGLYGLYPSDEVNRKTVSLRPVMT 249

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + +++ ++       +SYG +    ++  I    IGYADG+   LSG            
Sbjct: 250 LKTKLVYVKNLPPHSGISYGTKYVTEQEERIGTLPIGYADGFSRMLSG-----------K 298

Query: 298 GKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD----IKLDDVALA 349
            +  I+G  VP++G I MD  M  +     ++  I+ G+ + + G      I  D++A  
Sbjct: 299 AEVLIRGRRVPVVGNICMDQCMVSLKSFAEEAEQIKAGEEVVLIGQQSGECITADELAAK 358

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y+++  I  R  + Y
Sbjct: 359 LGTIHYEVVCMIAHRVPRLY 378


>gi|255280965|ref|ZP_05345520.1| alanine racemase [Bryantella formatexigens DSM 14469]
 gi|255268413|gb|EET61618.1| alanine racemase [Bryantella formatexigens DSM 14469]
          Length = 390

 Score =  392 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 166/385 (43%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M +   +  +IDL A+  N+ SM   +  +A   AV+K + YG G   IA        + 
Sbjct: 1   MKNYSRVYAEIDLDAIAYNFESMHRNIHPSAGMIAVIKADGYGHGAVPIARLAEPLDYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMS 117
            F V + EE ++LR    +  + +L  +     + +   ++ PV+  +      SK  + 
Sbjct: 61  GFAVATAEEALQLRTAGIKKPVLILGYVFEEHYEELIRADIRPVVFKLSMAEQLSKEAVR 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    + +DTG  R+G     E+L            ++  I +H A AD+       
Sbjct: 121 QQKNAVIHIGLDTGMTRIGFPCTAESLLEIMLISRLPNIKIEGIFTHFARADETDKTSAQ 180

Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            QLE F       K           ++S+GI+  P  +  L R GIS+YG         +
Sbjct: 181 NQLEHFLKFTDSLKEKGVDIPLRHCSNSAGIIDMPYANLNLVRAGISIYGIYPSEEVCKE 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           + P++  +  ++ I L+++  AG  VSYGG     R + IA   +GYADGYP  LS    
Sbjct: 241 NVPLKPAMALKSHITLVKEVEAGVAVSYGGTFVTKRKTRIATIPVGYADGYPRLLSNR-- 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G+  I G   PILG++ MD  M D+T+    +  D + + G D    + ++
Sbjct: 299 ---------GRVLIHGKSAPILGRVCMDQFMVDVTEIPQAQELDAVTLLGEDGESVLSVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++   SG   Y+ +  I  R  + Y
Sbjct: 350 ELGGLSGRFPYEFVCDISKRVPRVY 374


>gi|167855746|ref|ZP_02478501.1| alanine racemase [Haemophilus parasuis 29755]
 gi|167853143|gb|EDS24402.1| alanine racemase [Haemophilus parasuis 29755]
          Length = 378

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/384 (27%), Positives = 177/384 (46%), Gaps = 32/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     I+ +AL++N   + +L+ +++  AVVK NAYG G   +   L +  V+ F V  
Sbjct: 2   KPATATINGSALRHNMRLIKSLAPHSKICAVVKANAYGQGIRAVIKNLEDQ-VEAFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLM------- 116
           ++E + ++      +I +L G    +E +         VI  + QL     +        
Sbjct: 61  IKEALTIQESGYAGKILLLEGFFDREELLKTLSRRFDTVIHCLEQLELLENVAQEWQAEK 120

Query: 117 ---------SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
                             L++DTG +RLG+  ++  +F        L +    +SH + A
Sbjct: 121 QKGFWQRKTKIYFPITVWLKIDTGMHRLGIHPEQVAEFYQRLTACPLVECIHFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
           D+        Q+  F T+   YK +E S+++SSGIL     H+   RPGI +YG +    
Sbjct: 181 DELDCDYTEKQIATFETVSQEYK-VERSISASSGILYWKQAHYDWVRPGIIMYGISPHTT 239

Query: 228 K--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                  + V+T  + +I +R   AGE V YGG     +D+ I V AIGY DGYP     
Sbjct: 240 PIIDLGFKPVMTLSSSLIAVRSHKAGEPVGYGGSWVSDKDTKIGVVAIGYGDGYPRNA-- 297

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                      G   F+ G  VPI+G+++MDM   D+      +VGD ++++G  + +++
Sbjct: 298 ---------PEGTPVFVNGRKVPIVGRVSMDMMTVDLGIDSQDKVGDEVELWGERLLIEE 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA A G+ NY+L+ ++  R    Y
Sbjct: 349 VAEAIGSINYELITKLTPRVITEY 372


>gi|325290796|ref|YP_004266977.1| alanine racemase [Syntrophobotulus glycolicus DSM 8271]
 gi|324966197|gb|ADY56976.1| alanine racemase [Syntrophobotulus glycolicus DSM 8271]
          Length = 376

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/381 (28%), Positives = 181/381 (47%), Gaps = 25/381 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH        IDL AL+ N+  +   + N+   A+VK NAYG G  +I   L   GV+ F
Sbjct: 1   MHGMRPAWACIDLGALRRNYRRICRQT-NSEVMAIVKANAYGHGALEIVRTLKEEGVRRF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCG 119
            V  +EE +++R   P+  + ++    P Q + I    +IP +  + Q   +S +    G
Sbjct: 60  GVAILEEALQIREKFPEVTVMLIGPTMPDQAERIVAEGIIPEVFRLEQAEAFSLEAEKKG 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           +     ++VDTG  R+G   ++AL+           ++  I +HLA AD+        QL
Sbjct: 120 IPAILHIKVDTGMGRIGFQ-EDALENILKIAQLPGIEIEGIYTHLATADEIDLGFAFTQL 178

Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPM 232
           +RF  L    K          +A+S+ IL   +  ++L RPG+ LYG          +  
Sbjct: 179 KRFDGLYESLKTAGLNIPMRHVANSAAILQLRDQEYELCRPGLMLYGQLPMNHWEGENGF 238

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + +++ +ARI+ ++K  AG+ VSYG        +L+A   +GYADG   +LS   +    
Sbjct: 239 EPLMSLKARIVHLKKIAAGDSVSYGRTFIAQAPTLVATLPLGYADGLRRSLSNNWN---- 294

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                    +KG   P++G+I MD TM D+T    +E+GD + I G +    +    +A 
Sbjct: 295 -------VIVKGRYAPVIGRICMDQTMIDVTGIEGVEIGDEVTILGSEGKSSLTAAQMAE 347

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            +GT +Y++L  I  R  + Y
Sbjct: 348 CAGTISYEILCGISQRVPRVY 368


>gi|16077531|ref|NP_388345.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308287|ref|ZP_03590134.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312609|ref|ZP_03594414.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317532|ref|ZP_03598826.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321808|ref|ZP_03603102.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321314138|ref|YP_004206425.1| alanine racemase [Bacillus subtilis BSn5]
 gi|3915604|sp|P10725|ALR1_BACSU RecName: Full=Alanine racemase 1
 gi|1881274|dbj|BAA19301.1| ALANINE RACEMASE [Bacillus subtilis]
 gi|2632764|emb|CAB12271.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. 168]
 gi|320020412|gb|ADV95398.1| alanine racemase [Bacillus subtilis BSn5]
          Length = 389

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/384 (27%), Positives = 167/384 (43%), Gaps = 30/384 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +  F R    +IDL+A+K N  +M    G +    AVVK NAYG G  + A A  +AG
Sbjct: 1   MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR    +A I VL  + P    I  + ++     SV  L   ++  
Sbjct: 61  ASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHT 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVN 175
             G S  + L+VDTG NRLG+  +E +       ++    +   + +H A AD+      
Sbjct: 121 KKG-SLHFHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----S 229
            +Q ERF+ LI+    K +    A+S+  L      F   R GI +YG     +      
Sbjct: 180 LMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADMSDEIP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++   T  + +  ++    GE VSYG +    +D+ I    +GYADG+   L G D  
Sbjct: 240 FQLRPAFTLHSTLSHVKLIRKGESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGTDI- 298

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       +KG  + I G+I MD  M ++        G  + + G      I +D+
Sbjct: 299 -----------LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY++   I +R  + +
Sbjct: 346 IAGRLETINYEVACTISSRVPRMF 369


>gi|157963394|ref|YP_001503428.1| alanine racemase [Shewanella pealeana ATCC 700345]
 gi|254802379|sp|A8H8K6|ALR_SHEPA RecName: Full=Alanine racemase
 gi|157848394|gb|ABV88893.1| alanine racemase [Shewanella pealeana ATCC 700345]
          Length = 358

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 172/367 (46%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            F R +I   ALKNN   ++ L+ +++  AVVK N YG G   +A  L N     F +  
Sbjct: 3   PFPRAEISRHALKNNLARLHELAPSSKVMAVVKANGYGHGLLNVAQCLDN--ADGFGLAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +A++ +L G     + + + + ++  V+    Q+    +         
Sbjct: 61  LEEALALRAGGVKAKLLLLEGFFRATDLVTLVEHDIETVVHHESQIEMLEQA-ELNKPVT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             ++VD+G +RLG    E             + +   +++H ACAD+P +   + Q+  F
Sbjct: 120 VWMKVDSGMHRLGFVPDEFHQIYQRLLACDNIAKPINLMTHFACADEPDNDCTAKQIAVF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239
             L     G + +LA+S+G L          RPGI+LYG +  +      H +   +   
Sbjct: 180 EELTKDLLG-DRTLANSAGALFWQQSQASWIRPGIALYGVSPVVGDLGTKHGLIPAMELV 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I IR   AG+ V YG      +D+ + V AIGY DGYP            +  LG  
Sbjct: 239 SQLIAIRDHKAGQPVGYGSHWVAEKDTKLGVVAIGYGDGYPR-----------NAPLGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G + PI+G+++MDM   D+       VGD   ++G D+ +++VA   GT  Y+L+ 
Sbjct: 288 VLINGRLAPIVGRVSMDMLTVDLGAGAKDNVGDKAVLWGKDLPVEEVAEHIGTIAYELVT 347

Query: 360 RIGTRYA 366
           ++  R A
Sbjct: 348 KLTPRVA 354


>gi|145641722|ref|ZP_01797298.1| alanine racemase [Haemophilus influenzae R3021]
 gi|145273536|gb|EDK13406.1| alanine racemase [Haemophilus influenzae 22.4-21]
          Length = 360

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 175/370 (47%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  
Sbjct: 4   KPATAKISSHALKKNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRA-NLPSLIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240
            +     +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP            +V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYP-----------SNVPEGTPV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|52425237|ref|YP_088374.1| alanine racemase [Mannheimia succiniciproducens MBEL55E]
 gi|81825540|sp|Q65TC1|ALR_MANSM RecName: Full=Alanine racemase
 gi|52307289|gb|AAU37789.1| Alr protein [Mannheimia succiniciproducens MBEL55E]
          Length = 357

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/369 (30%), Positives = 180/369 (48%), Gaps = 17/369 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +   +KI   ALK+N   +   + +++  AVVK NAYG G E ++  L N  V  F V  
Sbjct: 2   KPATVKISSVALKHNIQIIKQKAPHSKIIAVVKANAYGHGVEFVSSTLENL-VDGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + +R       I +L G   P    I+   N+  V+ +  QL    +  +      
Sbjct: 61  LAEALSVRSNGVTKPILLLEGFFSPKDLPILSVNNIQTVVHNQDQLDAIKRA-NLENPIK 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +RLG+SL+E   + +   N         +SH + AD+  S   ++QL RF 
Sbjct: 120 VWLKIDTGMHRLGVSLEEVDYYYNELMNCPNVDEVGFVSHFSRADETDSDYTNIQLNRFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEAR 241
               + KG   ++A+S GIL   + H +  RPGI +YG +     +  + +  V+T  + 
Sbjct: 180 DATKNKKG-NRTIAASGGILFWEDSHLEYIRPGIIMYGVSPINIPSSEYGLIPVMTLTSS 238

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R    GE V YGG     RD+ I V AIGY DGYP            +V  G   +
Sbjct: 239 LIAVRDHKKGEPVGYGGIWVSERDTKIGVVAIGYGDGYPR-----------NVPAGTPIY 287

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+      +VGD   ++G ++ +++VA  +G  +Y+L+ ++
Sbjct: 288 INGRRVPIVGRVSMDMVTVDLGPDCKDKVGDEAVLWGKELPIEEVAEITGLLSYELMTKL 347

Query: 362 GTRYAKFYT 370
             R    Y 
Sbjct: 348 TPRVLTEYV 356


>gi|219871770|ref|YP_002476145.1| alanine racemase [Haemophilus parasuis SH0165]
 gi|219691974|gb|ACL33197.1| alanine racemase [Haemophilus parasuis SH0165]
          Length = 378

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/384 (27%), Positives = 177/384 (46%), Gaps = 32/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     I+ +AL++N   + +L+ +++  AVVK NAYG G   +   L +  V+ F V  
Sbjct: 2   KPATATINGSALRHNMRLIKSLAPHSKICAVVKANAYGQGIRAVIKNLEDQ-VEAFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLM------- 116
           ++E + ++      +I +L G    +E +         VI  + QL     +        
Sbjct: 61  IKEALTIQESGYAGKILLLEGFFDREELLKTLSRRFDTVIHCLEQLELLENVAQEWQAEK 120

Query: 117 ---------SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
                             L++DTG +RLG+  ++  +F        L +    +SH + A
Sbjct: 121 QKGFWQRKTKIYFPITVWLKIDTGMHRLGIHPEQVAEFYQRLTACPLVECIHFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225
           D+        Q+  F T+   YK +E S+++SSGIL     H+   RPGI +YG +    
Sbjct: 181 DELDCDYTEKQIATFETVSQEYK-VERSISASSGILYWKQAHYDWVRPGIIMYGISPHST 239

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                  + V+T  + +I +R   AGE V YGG     +D+ I V AIGY DGYP     
Sbjct: 240 PIVDLGFKPVMTLSSSLIAVRSHKAGEPVGYGGSWVSDKDTKIGVVAIGYGDGYPRNA-- 297

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                      G   F+ G  VPI+G+++MDM   D+      +VGD ++++G  + +++
Sbjct: 298 ---------PEGTPVFVNGRKVPIVGRVSMDMMTVDLGIDSQDKVGDEVELWGERLLIEE 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA A G+ NY+L+ ++  R    Y
Sbjct: 349 VAEAIGSINYELITKLTPRVITEY 372


>gi|138893881|ref|YP_001124334.1| alanine racemase [Geobacillus thermodenitrificans NG80-2]
 gi|196250545|ref|ZP_03149235.1| alanine racemase [Geobacillus sp. G11MC16]
 gi|134265394|gb|ABO65589.1| Alanine racemase [Geobacillus thermodenitrificans NG80-2]
 gi|196209894|gb|EDY04663.1| alanine racemase [Geobacillus sp. G11MC16]
          Length = 384

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 155/378 (41%), Gaps = 26/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +IDL A+ +N  ++   L    +  AVVK NAYG G  ++A     AG     V
Sbjct: 5   HRDTWAEIDLDAIYDNVANLRRFLPDGTQVMAVVKANAYGHGDAQVATTALEAGASYLAV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR     A I VL    P   ++     +   +     L   + + +     
Sbjct: 65  AILDEALALRQKGINAPILVLGASRPADVELAARHRITLTVFRADWLEEAASIYNGSTPV 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
              L++DTG  RLG+  +E         ++     L  + +H A AD+ ++   S Q  R
Sbjct: 125 HLHLKMDTGMGRLGVKDEEETKRITTLIDRHPSFILEGVYTHFATADEVNTDYLSYQYRR 184

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           F  ++            A+S+ +L  P   F + R GIS+YG     +      + ++  
Sbjct: 185 FLHMLEWLPSRPPIVHCANSATVLRFPERAFNMARFGISMYGLAPSPSIKPLLPYELKEA 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ +++   GE VSYG       +  I    IGYADG+   L            
Sbjct: 245 FSLHSRLVHVKRLQPGEKVSYGATYTAQEEEWIGTLPIGYADGWLRRLQHF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  + + L +  G  + + G      I +DDVA    
Sbjct: 296 ---HVLVNGQKAPIVGRICMDQCMIRLPEPLPV--GTKVTLIGRQGDEFISVDDVARYLE 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 351 TINYEVPCTISYRVPRIF 368


>gi|268589444|ref|ZP_06123665.1| alanine racemase [Providencia rettgeri DSM 1131]
 gi|291315109|gb|EFE55562.1| alanine racemase [Providencia rettgeri DSM 1131]
          Length = 359

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 166/372 (44%), Gaps = 27/372 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I L  L++N   +    GN++  +V+K + YG G ++I PAL       F V  
Sbjct: 3   RPISAVIHLQNLQHNLAIVRQHVGNSKIWSVMKADGYGHGIKQIWPALKE--TDGFGVLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            +E + LR    +  I +L G   P   ++I   NL   + S  QL              
Sbjct: 61  FDEAILLRKEGWKGPILLLEGFFQPQDLQLIDQYNLTTSVHSEWQLFAIENAQ-LSSPIS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS--VQLER 181
             +++++G NRLG S  E              +   ++SH A + D  + V     Q+++
Sbjct: 120 VYIKLNSGMNRLGFSPSEYESVVQRLSKMLNVRSLTLMSHFANS-DTKTGVTEPFQQIQQ 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVT 237
           F  L      +E  +A+S   L   +  +   R GI LYG +     +      ++  +T
Sbjct: 179 FEHL-----SLETCIANSGATLWHKHTQYDWIRTGILLYGASPSGKSTDISGLGLKAAMT 233

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++ +I I +  AG+ + YG +   T+   IA  A GYADGYP   +             
Sbjct: 234 LQSEVIAIHEIPAGQSIGYGSRFTSTKPMRIATVACGYADGYPRHAANR----------- 282

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              + KG    +LG ++MDM   DI+D   +++G+ ++++G ++ +D+VA A+GT  Y+L
Sbjct: 283 TPVWCKGKRCALLGAVSMDMLTIDISDCGDVKLGERVELWGQNLPVDEVAQAAGTIGYEL 342

Query: 358 LVRIGTRYAKFY 369
           L  +  R    Y
Sbjct: 343 LCALAKRVPVSY 354


>gi|168184689|ref|ZP_02619353.1| alanine racemase [Clostridium botulinum Bf]
 gi|237795085|ref|YP_002862637.1| alanine racemase [Clostridium botulinum Ba4 str. 657]
 gi|182672221|gb|EDT84182.1| alanine racemase [Clostridium botulinum Bf]
 gi|229263448|gb|ACQ54481.1| alanine racemase [Clostridium botulinum Ba4 str. 657]
          Length = 389

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 162/384 (42%), Gaps = 27/384 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            ++  +  +++L  L  N  ++          AVVK N YG G   IA  L   G     
Sbjct: 3   RNHRPVWEEVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRHS 62

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V  + E ++LR       I +L    P   + I + N+ PV+ S       SK  S    
Sbjct: 63  VACLSEAIELREGGITCPINILGITPPTLFEDIINYNIEPVVFSYDYANQLSKAASLKNR 122

Query: 122 H-PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG     E+L+      N    ++  + SH + +D+     +  Q 
Sbjct: 123 IVKTHIAVDTGMGRLGFDPTVESLEEIKRIQNLSNIKIEGLCSHFSSSDEKDKSYSEYQF 182

Query: 180 ERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHP 231
           + F+           K     +++S+ I+  P+ +    R GI LYG         ++  
Sbjct: 183 KIFQNFRKKLIEMNMKIPIHHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSREVNKENLH 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T +A I+ I+   +G+ V Y  + K  R S IA+  +GY DGY   LS       
Sbjct: 243 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345
                 GK  I G   PI+G I MD  M D+TD   ++VGD + I G D         +D
Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGRDDINNLRYDAED 351

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   G T+ +++  I  R  + Y
Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375


>gi|119485491|ref|ZP_01619819.1| alanine racemase [Lyngbya sp. PCC 8106]
 gi|119457247|gb|EAW38373.1| alanine racemase [Lyngbya sp. PCC 8106]
          Length = 404

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 177/386 (45%), Gaps = 35/386 (9%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   ++I+L A+  N   +  L S      AVVK +AYG G   +A  +  AG   F V 
Sbjct: 28  QRSWVEINLAAIAYNVEQIKTLLSPQTTLMAVVKADAYGHGAVSVAKTVSQAGAGAFAVA 87

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
           +  EG++LR    +  I VL   + P + K I    L P + +  Q   +S+++S    +
Sbjct: 88  TTPEGIELREAGIKQPILVLGAAYTPDEVKAISHWQLQPTLCTPQQALLFSEILSQLNQT 147

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L +DTG +RLG S Q A++F          +++ I SH A AD P   +   Q +R
Sbjct: 148 LEVHLNIDTGMSRLGTSWQHAVEFVQLVQRLPNLKIAGIYSHFATADSPDQTLMRQQHQR 207

Query: 182 FRTLISHYKGIEA--------------SLASSSGILLGPNYHFQLTRPGISLYG--GTDK 225
           F+ +I    G+                 +++S+  L     H+ L R G+++YG      
Sbjct: 208 FQDVIKKI-GVNPQNGLTKETVSRPCLHISNSAATLTDSALHYDLVRVGLAIYGLYPAPH 266

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +  +  ++  +  +A++  I+   AG  VSYG Q    + + +AV  IGYADG P  LS 
Sbjct: 267 LAATIDLKPAMQVKAKVTQIKMIEAGTGVSYGYQYVAEKITRVAVVGIGYADGIPRNLSN 326

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
                        K  ++G ++P +G ITMD  M D+T    ++VG+ + + G +    I
Sbjct: 327 KM-----------KVLVRGQLLPQIGAITMDQLMIDVTSMPDLQVGEVVTVLGQEGENTI 375

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367
             +D A    T ++++L     R  +
Sbjct: 376 SAEDWAADLDTISWEILCGFKHRLPR 401


>gi|157803277|ref|YP_001491826.1| alanine racemase [Rickettsia canadensis str. McKiel]
 gi|166969427|sp|A8EXF8|ALR_RICCK RecName: Full=Alanine racemase
 gi|157784540|gb|ABV73041.1| alanine racemase [Rickettsia canadensis str. McKiel]
          Length = 355

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/364 (34%), Positives = 187/364 (51%), Gaps = 21/364 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L+A+KNN+  +  +   +   AVVK + YGLG  +I+ AL     + FFV S EEGV 
Sbjct: 8   INLSAIKNNYFLLQDICKTSLVGAVVKADGYGLGAVQISKALIEENCRHFFVASSEEGVN 67

Query: 71  LRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQV 128
           +R        I VL G+       + + NLIP+++++ Q+  + +  +   +  P  L  
Sbjct: 68  VRKALGIDVNILVLNGVFEHDALELIEYNLIPILNNLKQIEIWQQFGNLKNLLLPCYLHF 127

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +TG NRLGLS  E     +N    K   L  IISHLA +++  +  N  QL +F+  + +
Sbjct: 128 NTGINRLGLSSNEIEQLINNRDLLKGLNLQYIISHLAISEEIDNPYNLEQLNKFKAYLRY 187

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
           +  I+ASLA+S GI LG +YHF L RPG +LYG    +         VT +A II ++  
Sbjct: 188 FPSIKASLANSGGIFLGQDYHFDLVRPGAALYGLNPLMQNP------VTLKAPIIHLQNL 241

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
                + Y       RDS+IA   +GYADGY    S             GK FI G  VP
Sbjct: 242 TLDSHIGYNMTFTTKRDSVIATLPLGYADGYSRNFSNQ-----------GKVFINGRSVP 290

Query: 309 ILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           I+G+++MD+   D+TD    ++  G  ++I G     D +A   GT  Y++L  +G RY 
Sbjct: 291 IVGRVSMDLINIDVTDLPPSDIFLGQEVEIIGNHCTPDKIASIIGTIGYEVLTSLGNRYR 350

Query: 367 KFYT 370
           + YT
Sbjct: 351 RKYT 354


>gi|309973248|gb|ADO96449.1| Alanine racemase [Haemophilus influenzae R2846]
          Length = 360

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 173/365 (47%), Gaps = 18/365 (4%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           KI   ALK N   +   + N++  AVVK NAYG G   +A  L    V  F V  +EE +
Sbjct: 9   KISSHALKQNLEIIKQKALNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVARLEEAL 67

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR       I +L G    Q+  I+   N+  V+ +  QL    +  +        L++
Sbjct: 68  ALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLEALKR-SNLPSPIKVWLKI 126

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF +   
Sbjct: 127 DTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFLSATK 186

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARIILI 245
             +G E ++A+S GIL  P  H +  RPGI +YG +    I K   +  V+   + +I +
Sbjct: 187 DKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSSLIAV 245

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ V YGG     RD+ I V A+GY DGYP             V  G   ++ G 
Sbjct: 246 RHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPVYLNGR 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ ++  R 
Sbjct: 295 LVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKLTPRV 354

Query: 366 AKFYT 370
              Y 
Sbjct: 355 ITEYV 359


>gi|145627697|ref|ZP_01783498.1| alanine racemase [Haemophilus influenzae 22.1-21]
 gi|144979472|gb|EDJ89131.1| alanine racemase [Haemophilus influenzae 22.1-21]
          Length = 360

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 178/370 (48%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK N   +   + N++  AVVK NAYG G   +A  L  + V  F V  
Sbjct: 4   KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVAR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    Q+  I+   N+  V+ +  QL    +  +      
Sbjct: 63  LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRA-NLPSPIK 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E   F          Q     +SH + AD+  S    +Q+ RF
Sbjct: 122 VWLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240
            ++    +G E ++A+S GIL  P+ H +  RPGI +YG +    I K   +  V+   +
Sbjct: 182 LSVTKDKQG-ERTIAASGGILFWPDSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    G+ V YGG     RD+ I V A+GY DGYP            +V  G   
Sbjct: 241 SLIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYP-----------SNVPEGTPI 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           ++ G +VPI+G+++MDM   D+       VGD + ++G ++ ++ VA  +G  +Y+L+ +
Sbjct: 290 YLNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITK 349

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 350 LTPRVITEYV 359


>gi|54310410|ref|YP_131430.1| alanine racemase [Photobacterium profundum SS9]
 gi|123614432|sp|Q3V7I5|ALR_PHOPR RecName: Full=Alanine racemase
 gi|46914851|emb|CAG21628.1| putative alanine racemase, biosynthetic [Photobacterium profundum
           SS9]
          Length = 359

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 110/366 (30%), Positives = 175/366 (47%), Gaps = 22/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  AL +N   ++  + N++  AVVK N YG G   +A +L +     F V  +EE + 
Sbjct: 8   INTDALTHNIRQLHLQAPNSKLLAVVKANGYGHGLLHVAKSLPD--ADAFGVARIEEALT 65

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G +      +I   N+  V+ S+ QL                L++D
Sbjct: 66  LRAGGVVKPILLLEGFYGASDLPVIVTNNIHTVVHSIEQLEALESA-ELDNQAVVWLKID 124

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++  D          + +    +SH  CADD +S+V + Q+  F +L   
Sbjct: 125 TGMHRLGVRPEQLDDVVQRLHACDNVAKPLRYMSHFGCADDLASNVTNQQINTFLSLTEG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-----KSHPMQTVVTAEARII 243
            +G E SLA+S+GIL  P+   +  RPGI +YG +         ++  MQ V+T  + +I
Sbjct: 185 CRG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFTEPDRSAEAFNMQPVMTLTSSLI 243

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R    GE V YGG     RD+ + V AIGY DGYP T              G    + 
Sbjct: 244 AVRDVKEGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVLVN 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G +VP+ G+++MDM   D+  +   +VGD   ++G  +  + VA   GT  Y+L+ ++ +
Sbjct: 293 GRIVPMAGRVSMDMLTVDLGPNAQDKVGDEAILWGNGLPAEVVAEHIGTIAYELVTKLTS 352

Query: 364 RYAKFY 369
           R    Y
Sbjct: 353 RVDMTY 358


>gi|295092961|emb|CBK82052.1| alanine racemase [Coprococcus sp. ART55/1]
          Length = 389

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 176/386 (45%), Gaps = 29/386 (7%)

Query: 1   MHSNEFLRL--KIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M ++ F R+   I+L  +++N  +M  L  G+ +  AV+K +AYG G  ++A AL +  V
Sbjct: 1   MDNSNFNRVQAVINLDNIRDNITAMKRLIDGDKKMLAVIKADAYGHGAVEVAEALDDL-V 59

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116
             F V  ++E ++LR       I +L    P   ++I   ++ P +  V      S L  
Sbjct: 60  DFFAVAFIDEALELRRANIDKPILILGYTDPSDYELILRYDVRPAMYEVDDAQKLSDLAV 119

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           S        ++VDTG  R+G +  E  +            ++  I +H A AD+      
Sbjct: 120 SMNTKAKIHIKVDTGMGRIGFTCDEDGVKNIEKISQMPGIEIEGIFTHYAKADELDKTAA 179

Query: 176 SVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           + QLE+FR + S  +  GI      +++S+GI+   N  F + R GI  YG         
Sbjct: 180 NGQLEKFRWINSQLEALGIHIPVRHISNSAGIMEMDNSDFDMVRSGIVTYGLYPSDEVDK 239

Query: 231 PM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            +   +  +   +++I ++   AG  + YG       D  +A  + GYADGYP   S + 
Sbjct: 240 NIAALKPAMRLMSKVIFVKDVKAGTGIGYGWSYIADHDIKVATVSAGYADGYPRAQSNI- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G+  I G   PI+G++ MD  M D++    ++V D + + G D    + +
Sbjct: 299 ----------GRVIIHGEYAPIIGRVCMDQFMVDVSHIDGVKVRDDVTLIGQDGDREVTV 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           ++VA  + + NY+L+  I  R  + Y
Sbjct: 349 EEVAAPANSFNYELVCNISRRVPRTY 374


>gi|225378153|ref|ZP_03755374.1| hypothetical protein ROSEINA2194_03813 [Roseburia inulinivorans DSM
           16841]
 gi|225209959|gb|EEG92313.1| hypothetical protein ROSEINA2194_03813 [Roseburia inulinivorans DSM
           16841]
          Length = 390

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/385 (26%), Positives = 172/385 (44%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M+ +  +   IDL+A+ +N  +M   +  + +  AV+K + YG G   IA  + +   V 
Sbjct: 1   MNKHSRVCANIDLSAVMHNMEAMHQNIDPDTKIMAVIKADGYGHGAVPIAKEIEHLDYVY 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            +   +VEEG+ LR    Q  I +L  I P Q + +    + P + ++      S     
Sbjct: 61  GYAAATVEEGMILRNNGIQKPILILGYIFPDQYEEVIQAEICPSVFTLEMAKELSAAAEK 120

Query: 119 -GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G        VDTG +R+G  + +EA D            +  I +H A AD+       
Sbjct: 121 VGKDCRMHFAVDTGMSRIGYQVTEEAADEMAQIAKLPHMIVEGIFTHFAKADEYDKTFTK 180

Query: 177 VQLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH- 230
            Q+++FR +I+    +G+       ++S+GI      +  + R GI+LYG          
Sbjct: 181 EQIQKFRKMIAMMEDRGVSIPVKHCSNSAGIAEIREANMDMVRAGITLYGLWPSEEVDQN 240

Query: 231 --PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V+  +  +  ++   AG  +SYGG     RDS IA   +GYADGY   LS    
Sbjct: 241 SLDLKPVMELKTHVAYVKDLEAGRAISYGGTFITKRDSRIATIPVGYADGYCRGLSNT-- 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G   PI G++ MD  M D+TD   +++GD + + G D    I ++
Sbjct: 299 ---------GSVLIHGKRAPICGRVCMDQFMVDVTDIPDVKIGDEVTLIGRDGDEVITME 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +V   SG  NY+ +  +G R  + +
Sbjct: 350 EVGSLSGRFNYEFVCVLGKRIPRVF 374


>gi|5690425|gb|AAD47081.1|AF165881_1 catabolic alanine racemase DadX [Pseudomonas aeruginosa PAO1]
          Length = 357

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 169/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EEG++LR    +  I +L G     E ++I   +   V+    QL    +  S      
Sbjct: 60  IEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERA-SLARPLN 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+G   ++                 +++SH + AD+        QL  F 
Sbjct: 119 VWLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFS 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                 +G E SL +S  +L  P       RPGI LYG T        +  ++ V+T E+
Sbjct: 179 AASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R   AGE V YG +    R   I V A+GYADGYP   +            G   
Sbjct: 238 KVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAA-----------DGTLV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL  
Sbjct: 287 FIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-KRVPRVYS 355


>gi|331087586|ref|ZP_08336516.1| alanine racemase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330400457|gb|EGG80090.1| alanine racemase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 383

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 163/386 (42%), Gaps = 27/386 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M  +  +  +IDL A+  N   M   +   AR  AV+K + YG G   IA      + V 
Sbjct: 1   MDQHNRVCAQIDLDAIAYNMEQMKDQIGKEARLIAVIKTDGYGHGAVPIARMFETFSYVW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMS 117
            + V  +EE V LR    +  I VL  + P Q + +    +   + +         + + 
Sbjct: 61  GYAVACIEEAVSLRKEGIKKPILVLGCVFPDQYETMIKNEIRAAVYTKEMAEGMSDEAVR 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +  + +++DTG  R+G  +  E+++            +  + +H A AD+       
Sbjct: 121 QGKNAYFHIKIDTGMGRIGFPVNSESVNLIEEISKLPNIHMEGLFTHFAKADEKEKSYTL 180

Query: 177 VQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            Q ERF  +    +     +      +S+GI+  PN    L R GIS YG          
Sbjct: 181 KQHERFLWMKEQLEKRNVDITYYDCDNSAGIIDFPNLKHDLARAGISTYGMYPSDEVQKS 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++  ++  + I  +++  AG  +SYGG         IA   +GY DGYP +LS    
Sbjct: 241 NVHLKPALSLISHITFVKEVEAGTPISYGGTFVAPEKMKIATIPVGYGDGYPRSLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G    I+G++ MD  M D+TD       D + + G D    I ++
Sbjct: 298 --------KGSVLIRGKRAKIVGRVCMDQFMVDVTDIPGAAFMDRVVLIGKDGKDEITVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370
           +++  SG  NY+ +  +G R  + YT
Sbjct: 350 ELSKLSGRFNYEFVCCLGKRIPRVYT 375


>gi|156932325|ref|YP_001436241.1| alanine racemase [Cronobacter sakazakii ATCC BAA-894]
 gi|156530579|gb|ABU75405.1| hypothetical protein ESA_00100 [Cronobacter sakazakii ATCC BAA-894]
          Length = 359

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 170/367 (46%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + ++  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVVNRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I        + S  QL    +  +        ++
Sbjct: 64  LRLREGGITQPILLLEGFFNAADLPAIAAQRFHTAVHSEEQLAALEQA-TLSEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A  F    +  K + Q   ++SH A AD+P       QL+ F +  
Sbjct: 123 LDTGMHRLGVRPEAAQAFYDRLAACKNVRQPVNVVSHFARADEPDCGATERQLDIFNSFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP----MQTVVTAEARI 242
               G + S+A+S GIL  P  HF   RPGI LYG +             Q  ++  + +
Sbjct: 183 HDKPG-KRSIAASGGILFWPQSHFDWVRPGIILYGLSPLDTHPWGAELGFQPAMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRCA-----------PTGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+    + + GD + ++G  + ++ +A A+G + Y+L+ R+ 
Sbjct: 291 NGREVPIVGRVAMDMICVDLGPDAAEKAGDTVIMWGEALPVERIAEATGVSAYELVTRLT 350

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 351 SRVAMRY 357


>gi|269137597|ref|YP_003294297.1| alanine racemase [Edwardsiella tarda EIB202]
 gi|267983257|gb|ACY83086.1| alanine racemase [Edwardsiella tarda EIB202]
 gi|304557668|gb|ADM40332.1| alanine racemase [Edwardsiella tarda FL6-60]
          Length = 363

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 176/368 (47%), Gaps = 22/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N+  +   + ++R  AVVK NAYG G  + A  L+      + V  + E 
Sbjct: 6   AIIDRRALRHNFQQIRKFAPHSRLIAVVKANAYGHGLLETAKILHQ--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     +  ++   N+   + S  QL                ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFSASDLPVLVANNIETAVHSEEQLQALENAR-LERPIKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F         + Q    +SH + AD+P       QL  F   +
Sbjct: 123 LDTGMHRLGVRPEQAEAFYRRLCTCPNVAQPVNFMSHFSRADEPECGRTEQQLACFDDFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAEAR 241
               G E S+A+S GILL P  H  + RPGI +YG + + + S     + +Q  +T ++ 
Sbjct: 183 QGKAG-EQSIAASGGILLWPQSHRDMVRPGIIMYGVSPQADLSLAADHYGLQPAMTLQSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ + V AIGY DGYP +              G    
Sbjct: 242 LIAVREHKAGEPVGYGGAWVAQRDTRLGVVAIGYGDGYPRSA-----------PSGTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+    +  VGD + ++GP + ++ VA  +G + Y+L+ ++
Sbjct: 291 INGREVPIVGRVSMDMISVDLGPQAADRVGDNVIMWGPGLPVEKVAACTGISAYELITKL 350

Query: 362 GTRYAKFY 369
            +R A  Y
Sbjct: 351 TSRVAMEY 358


>gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
 gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
          Length = 870

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 89/384 (23%), Positives = 163/384 (42%), Gaps = 27/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           + +     ++IDL+A+ NN   +  +     +    +K +AYG G  K+A  + + G   
Sbjct: 497 LQTERPTWVEIDLSAIGNNVRKIREIVGPGVQILISLKADAYGHGALKVARTVLHNGASM 556

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSC 118
             V ++ E   LR     A I +   +   Q +     ++   + S            + 
Sbjct: 557 LGVATLSEAAALREAGIDAPILIFGYVPYWQMREAVRLDVTITLYSSESAQALARAAQAL 616

Query: 119 GVSHPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
             S    ++VDTG  RLG+     +E L     +   +  ++  I +H A AD       
Sbjct: 617 RQSVRVHIKVDTGMGRLGIRSEQAEEILALVREAGELEGLEVEGIYTHFASADADDKTYA 676

Query: 176 SVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINK 228
             QL RF+ ++   +  E        A+S+  L  P  HF + RPGI++YG     ++  
Sbjct: 677 HTQLARFQHILELLERAEICPPVVHAANSAATLSLPEAHFNMVRPGIAIYGLDPSEEVRV 736

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               +  ++ + +I  ++   AGE +SYG      R + IAV  +GYADG+       +S
Sbjct: 737 PDGFKAALSFKTQIAQVKMIPAGECISYGCTYVTERPTRIAVLPVGYADGFRRAPRNWES 796

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344
                        + G   P++G+I MD  M D++    + +GD + + G     ++  +
Sbjct: 797 -----------VLVHGQEAPLIGRICMDQCMIDVSAIPQVRMGDEVVLIGRQGKAELTAE 845

Query: 345 DVALASGTTNYDLLVRIGTRYAKF 368
           ++A   GT NY+++  I  R  + 
Sbjct: 846 EIARRLGTINYEVVAEILARVPRV 869


>gi|294634343|ref|ZP_06712881.1| alanine racemase [Edwardsiella tarda ATCC 23685]
 gi|291092240|gb|EFE24801.1| alanine racemase [Edwardsiella tarda ATCC 23685]
          Length = 363

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/366 (28%), Positives = 176/366 (48%), Gaps = 22/366 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N+  + + + ++R  AVVK NAYG G  + A  L+      + V  + E + 
Sbjct: 8   IDRRALRHNFQQIRSFAPHSRLIAVVKANAYGHGLLETANTLHQ--ADCYGVARIGEALM 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       I +L G     +  ++   N+   + S  QL    +           +++D
Sbjct: 66  LRSGGIVKPILLLEGFFSASDLPVLVANNIETAVHSEEQLQALEQAQ-LERPVKVWMKLD 124

Query: 130 TGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           TG +RLG+  ++A  F         + Q    +SH + AD+P       Q+  F   +  
Sbjct: 125 TGMHRLGVRPEQAEAFYQRLCACPNVAQPVNFMSHFSRADEPQCGRTEAQMACFDAFVQG 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAEARII 243
             G + S+A+S GILL P  H  + RPGI LYG + + + +     + +Q  +T ++ +I
Sbjct: 185 KPG-DQSIAASGGILLWPQSHRDMVRPGIILYGVSPQADLALAADHYGLQPAMTLQSSLI 243

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG      D+ + V AIGY DGYP +              G    I 
Sbjct: 244 AVREHKAGEPVGYGGTWVAECDTRLGVVAIGYGDGYPRSA-----------PSGTPVLIN 292

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G+++MDM   D+       VGD + ++GP + ++ VA  +G + Y+L+ ++ +
Sbjct: 293 GREVPIVGRVSMDMISVDLGPQAQDRVGDKVIMWGPGLPVEKVAACTGISAYELITKLTS 352

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 353 RVAMEY 358


>gi|227891789|ref|ZP_04009594.1| alanine racemase [Lactobacillus salivarius ATCC 11741]
 gi|227866448|gb|EEJ73869.1| alanine racemase [Lactobacillus salivarius ATCC 11741]
          Length = 371

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/383 (26%), Positives = 168/383 (43%), Gaps = 33/383 (8%)

Query: 3   SNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   R  I L A+K+N    ++ L       AVVK NAYG G   +A A   AG   F 
Sbjct: 5   RHRNTRAIISLEAIKHNVATQISKLKDGQSLFAVVKANAYGHGMIPVAKAAKEAGANGFC 64

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLM-SCG 119
           V  ++EG+ LR    +  I +L G++P  E +     +L   + ++  LT   KL+    
Sbjct: 65  VAIIDEGIALRESGIKDPILIL-GVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEK 123

Query: 120 VSHPYALQVDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            S    L +DTG  R+G      L+EA+DF     ++   +   + +H + AD       
Sbjct: 124 QSLKIHLALDTGMGRIGFRNTEDLKEAVDFIEKHSDQ--LKCEGVFTHFSTADSKDPAYF 181

Query: 176 SVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSH 230
             Q ++F  L+   K        A+S+  L  PN+   L R GIS+YG       I+++ 
Sbjct: 182 EKQSQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDVIDETW 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++ E+ ++ +++  AG  + YG     ++   I    IGYADG+   + G     
Sbjct: 242 NLEPALSLESELVAVKEVEAGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF---- 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   K  I G    I+G++ MD  M  +     +  G  + + G +    I   DV
Sbjct: 298 --------KVLIDGQYCEIVGRVCMDQFMVRLPKKYDL--GTKVTLIGENNGKVITAQDV 347

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + T +Y+++  I  R  + Y
Sbjct: 348 ANYADTIHYEIMCNITERVPRIY 370


>gi|330501216|ref|YP_004378085.1| alanine racemase [Pseudomonas mendocina NK-01]
 gi|328915502|gb|AEB56333.1| alanine racemase [Pseudomonas mendocina NK-01]
          Length = 357

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 165/369 (44%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     LSG AR  AVVK +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLDALRHNYQLARELSG-ARALAVVKADAYGHGAVRCAQAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR     A I +L G     E  + D  +L  V+ +  Q+    +         
Sbjct: 60  IEEALALREAGIGAPILLLEGFFETDELALIDQHDLWCVVHAQWQIEAIEQAQ-LSKPLS 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL   +                 ++++H A AD+P     + QL  F+
Sbjct: 119 VWLKLDSGMHRVGLHPSDYQQAYRRLLASGKISKIVLMTHFARADEPECERTAEQLAVFQ 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                    E SL +S  +L  P       RPGI LYG T        +  +  V+T E+
Sbjct: 179 QAREGLAA-EVSLRNSPAVLGWPQVPSDWVRPGIMLYGATPFEQAQEQAARLLPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 KVISVRELPAGEPVGYGARFVSERPTRVGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+TD     +   ++++G  +   DVA+A+G+  Y +   
Sbjct: 287 MVDGQPTRLIGRVSMDMLTVDLTDLPQAGLCSRVELWGKQVLASDVAMAAGSIPYQIFCN 346

Query: 361 IGTRYAKFY 369
           +  R    Y
Sbjct: 347 L-RRVPLLY 354


>gi|89092607|ref|ZP_01165560.1| alanine racemase [Oceanospirillum sp. MED92]
 gi|89083119|gb|EAR62338.1| alanine racemase [Oceanospirillum sp. MED92]
          Length = 358

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 164/369 (44%), Gaps = 18/369 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                 I L A+++N+    +++ +    A++K NAYG G  ++A AL +     F V  
Sbjct: 3   RAATATISLEAIRHNYSLAKSVAPDQGALAIIKANAYGHGAVEVAKALSDI-ADGFGVAC 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +  I +L G     E   I   NL   + S+ Q+   +          
Sbjct: 62  IEEAIELREAGIKLPILLLEGFFSADELDYISRENLWCAVHSLAQIDIIAAA-KIDTPIK 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG++  +  +      +    +  ++++H + AD+P   V + Q+  F 
Sbjct: 121 IWLKMDSGMHRLGVAPDDYQEAYQRLNDLTQVKEVVLMTHFSSADEPDLAVTAEQIALFD 180

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
            +    +  + SLA+S+G +  P       RPGI LYG T        +  ++  +T  +
Sbjct: 181 KVTQGIEA-DVSLANSAGTMAYPEARRSWQRPGIMLYGATPFAMPQEVADKLKPAMTLSS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    GE V Y       + + +   A+GYADGYP                G   
Sbjct: 240 EVIAVRDLEPGEAVGYSCTWVCDKPTRVGTVAMGYADGYPR-----------YAKSGTPV 288

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    I+G+++MDM   D+TD    EVG Y++ +G ++   ++A    T  Y L   
Sbjct: 289 LVNGQKSQIIGRVSMDMLAVDLTDIPDAEVGSYVEFWGDNLAASEIATYCDTIPYTLFTG 348

Query: 361 IGTRYAKFY 369
           I  R  K Y
Sbjct: 349 ITRRVHKKY 357


>gi|107104405|ref|ZP_01368323.1| hypothetical protein PaerPA_01005481 [Pseudomonas aeruginosa PACS2]
 gi|116053449|ref|YP_793776.1| alanine racemase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254238003|ref|ZP_04931326.1| catabolic alanine racemase [Pseudomonas aeruginosa C3719]
 gi|296392161|ref|ZP_06881636.1| alanine racemase [Pseudomonas aeruginosa PAb1]
 gi|313106726|ref|ZP_07792943.1| catabolic alanine racemase [Pseudomonas aeruginosa 39016]
 gi|115588670|gb|ABJ14685.1| catabolic alanine racemase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169934|gb|EAZ55445.1| catabolic alanine racemase [Pseudomonas aeruginosa C3719]
 gi|310879445|gb|EFQ38039.1| catabolic alanine racemase [Pseudomonas aeruginosa 39016]
          Length = 357

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 169/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EEG++LR    +  I +L G     E ++I   +   V+    QL    +  S      
Sbjct: 60  IEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERA-SLARPLN 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+G   ++                 +++SH + AD+        QL  F 
Sbjct: 119 VWLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFA 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                 +G E SL +S  +L  P       RPGI LYG T        +  ++ V+T E+
Sbjct: 179 AASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R   AGE V YG +    R   I V A+GYADGYP   +            G   
Sbjct: 238 KVISVRDLPAGEPVGYGARYSTERSQRIGVVAMGYADGYPRHAA-----------DGTLV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL  
Sbjct: 287 FIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-KRVPRVYS 355


>gi|15600495|ref|NP_253989.1| alanine racemase [Pseudomonas aeruginosa PAO1]
 gi|20137486|sp|Q9HTQ2|ALR2_PSEAE RecName: Full=Alanine racemase, catabolic
 gi|9951618|gb|AAG08687.1|AE004943_3 catabolic alanine racemase [Pseudomonas aeruginosa PAO1]
          Length = 357

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 169/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EEG++LR    +  I +L G     E ++I   +   V+    QL    +  S      
Sbjct: 60  IEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERA-SLARPLN 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+G   ++                 +++SH + AD+        QL  F 
Sbjct: 119 VWLKMDSGMHRVGFFPEDFSAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFA 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                 +G E SL +S  +L  P       RPGI LYG T        +  ++ V+T E+
Sbjct: 179 AASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R   AGE V YG +    R   I V A+GYADGYP   +            G   
Sbjct: 238 KVISVRDLPAGEPVGYGARYSTERSQRIGVVAMGYADGYPRHAA-----------DGTLV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL  
Sbjct: 287 FIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-KRVPRVYS 355


>gi|261409040|ref|YP_003245281.1| alanine racemase [Paenibacillus sp. Y412MC10]
 gi|261285503|gb|ACX67474.1| alanine racemase [Paenibacillus sp. Y412MC10]
          Length = 395

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 90/380 (23%), Positives = 167/380 (43%), Gaps = 30/380 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +I+L  L+ N+++   AL  + +  A VK NAYG G  ++A  L   G     V  ++E
Sbjct: 10  AEINLDHLRANYNAFREALPDHMKLLACVKANAYGHGAVEVARELQQLGAAYLSVAFLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
            ++LR       I VL    P    I ++ ++   + S   L     L +         +
Sbjct: 70  AIELRQGGISVPILVLGYTPPEAVGIAYEYDVTITLFSSEVLQAIKALPVKPEKPLKVHI 129

Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++D+G  RLGL   ++A+ F   +F+     +  + +H A AD+ +      Q  RF+ +
Sbjct: 130 KIDSGMGRLGLLPGEDAISFIEEAFSLPQVVVEGMFTHFARADEENKDYTLGQYRRFQGV 189

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVT 237
               +  +  +      +S+  +  P   + + R GI LYG         K+  ++ V+T
Sbjct: 190 ADALRDKDYHIPIIHTGNSAAAIDTPELSYNMVRVGIGLYGLYPSDEVNRKTVSLRPVMT 249

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + +++ ++       +SYG +    ++  I    IGYADG+   LSG            
Sbjct: 250 LKTKLVYVKNLPPHSGISYGTKYVTEQEERIGTLPIGYADGFSRMLSG-----------K 298

Query: 298 GKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD----IKLDDVALA 349
            +  I+G  VP++G I MD  M  +     ++  I+ G+ + + G      I  D++A  
Sbjct: 299 AEVLIRGRRVPVVGNICMDQCMVSLKSFAEEAEQIKAGEEVVLIGQQSGECITADELAAK 358

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y+++  I  R  + Y
Sbjct: 359 LGTIHYEVVCMIAHRVPRLY 378


>gi|238918209|ref|YP_002931723.1| alanine racemase [Edwardsiella ictaluri 93-146]
 gi|259710066|sp|C5BCC5|ALR_EDWI9 RecName: Full=Alanine racemase
 gi|238867777|gb|ACR67488.1| alanine racemase, putative [Edwardsiella ictaluri 93-146]
          Length = 363

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 112/368 (30%), Positives = 178/368 (48%), Gaps = 22/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N+  +   + ++R  AVVK NAYG G  + A  L       + V  + E 
Sbjct: 6   AIIDRRALRHNFQQIRKFAPHSRLIAVVKANAYGHGLLETAKILNQ--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     +  ++   N+   + S  QL                ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFSASDLPVLVANNIETAVHSEEQLQALENA-GLERPIRVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F         + Q    +SH +CAD+P S    VQL  F   +
Sbjct: 123 LDTGMHRLGVRPEQAEAFYRRLCACPNVAQPVNFMSHFSCADEPDSGRTEVQLACFDDFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAEAR 241
               G E S+A+S GILL P  H  + RPGI +YG + + + S     + +Q  +T ++ 
Sbjct: 183 RGKTG-EQSIAASGGILLWPQSHRDMVRPGIIMYGVSPQADLSLAADHYGLQPAMTLQSS 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ + V AIGY DGYP +              G    
Sbjct: 242 LIAVREHKAGEPVGYGGAWVAQRDTRLGVVAIGYGDGYPRSA-----------PSGTPVL 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+    +  VGD + ++GP + ++ VA  +G + Y+L+ ++
Sbjct: 291 INGREVPIVGRVSMDMISVDLGPQAADRVGDNVIMWGPGLPVEKVAACTGISAYELITKL 350

Query: 362 GTRYAKFY 369
            +R A  Y
Sbjct: 351 TSRVAMEY 358


>gi|90961338|ref|YP_535254.1| alanine racemase [Lactobacillus salivarius UCC118]
 gi|122449330|sp|Q1WV14|ALR_LACS1 RecName: Full=Alanine racemase
 gi|90820532|gb|ABD99171.1| Alanine racemase [Lactobacillus salivarius UCC118]
          Length = 371

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 99/383 (25%), Positives = 167/383 (43%), Gaps = 33/383 (8%)

Query: 3   SNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   R  I L A+K+N    ++ L       AVVK NAYG G   +A A   AG   F 
Sbjct: 5   RHRNTRAIISLEAIKHNVATQISKLKDGQSLFAVVKANAYGHGMIPVAKAAKEAGANGFC 64

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLM-SCG 119
           V  ++EG+ LR    +  I +L G++P  E +     +L   + ++  LT   KL+    
Sbjct: 65  VAIIDEGIALRESGIKDPILIL-GVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEK 123

Query: 120 VSHPYALQVDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                 L +DTG  R+G      L+EA+DF     ++   +   + +H + AD       
Sbjct: 124 QRLKIHLALDTGMGRIGFRNTEDLKEAVDFIEKHSDQ--LKCEGVFTHFSTADSKDPAYF 181

Query: 176 SVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSH 230
             Q ++F  L+   K        A+S+  L  PN+   L R GIS+YG       I+++ 
Sbjct: 182 EKQSQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDMIDETW 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++ E+ ++ +++  AG  + YG     ++   I    IGYADG+   + G     
Sbjct: 242 NLEPALSLESELVAVKEVEAGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF---- 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   K  I G    I+G++ MD  M  +     +  G  + + G +    I   DV
Sbjct: 298 --------KVLIDGQYCEIVGRVCMDQFMVRLPKKYDL--GTKVTLIGENNGKVITAQDV 347

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + T +Y+++  I  R  + Y
Sbjct: 348 ANYADTIHYEIMCNITERVPRIY 370


>gi|268316557|ref|YP_003290276.1| alanine racemase [Rhodothermus marinus DSM 4252]
 gi|262334091|gb|ACY47888.1| alanine racemase [Rhodothermus marinus DSM 4252]
          Length = 382

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 152/373 (40%), Gaps = 23/373 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I L  L++N   +    G A   AVVK +AYG G   +A  L  AG++ F V  + E 
Sbjct: 7   VEIHLGHLRHNLEQVRRRLGPAEPIAVVKADAYGHGLVPVARTLQEAGIRHFAVARLSEA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           V+LR       I +L    P          +   +SS                    ++V
Sbjct: 67  VELREAGITGSILLLGAAFPEDLAACVAHEVEVTVSSPLLAEAVCAAAPRYGPLRVHVKV 126

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  RLG+  +EA +            L  + +HLA A+ P       QLERF  L   
Sbjct: 127 DTGMGRLGIWPEEAPEIIRRLEQTPGVTLVGLCTHLATAEQPGDPFVQEQLERFEQLWRQ 186

Query: 189 YKGIEA--SLASSSGILLGPNYHF----QLTRPGISLYGGTDKINKS--HPMQTVVTAEA 240
                A   +A+S  +   P+ ++    Q  R G +LYG   +        ++ V+   A
Sbjct: 187 VGDAFAVRHVANSGALFTLPSSYWSDSRQQARIGAALYGYLPRPELPGADELRPVMRFVA 246

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I+ +R    G  +SYG          IAV   GY DG P  LS             G+ 
Sbjct: 247 CIVQVRTVPPGTTISYGRTWTAPGWRRIAVVGAGYGDGIPRRLSNR-----------GQV 295

Query: 301 FIKGYMVPILGKITMDMTMFDITD---SLSIEVGDYIQIFGP-DIKLDDVALASGTTNYD 356
            + G+  PI+G + MDMTM D+ D   +  ++ G+ +  FG     + +VA  + T  Y+
Sbjct: 296 GLHGHRFPIVGAVCMDMTMIDLGDPETAPDVQEGEPVVFFGEGGPSIAEVARWAETIPYE 355

Query: 357 LLVRIGTRYAKFY 369
           L      R  + Y
Sbjct: 356 LSCAAARRVPRRY 368


>gi|261822874|ref|YP_003260980.1| alanine racemase [Pectobacterium wasabiae WPP163]
 gi|261606887|gb|ACX89373.1| alanine racemase [Pectobacterium wasabiae WPP163]
          Length = 359

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 168/375 (44%), Gaps = 23/375 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +       I   AL++N   +  L+  ++  AVVK NAYG G  + A    +     +
Sbjct: 1   MKT---ATAVISRRALRHNLQRIRQLAPGSQVVAVVKANAYGHGMIESAHTFCD--ADCY 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  + E + LR       I +L G     +  ++ +  L   + S  QL    +  +  
Sbjct: 56  GVARLSEALALRAAGITKPIVLLEGFFSADDLPLLAEHQLETAVHSPEQLAALEQA-TLP 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 +++DTG +RLG+  ++A  F       + + Q   I+SH   AD+P +     Q
Sbjct: 115 QPLRVWMKLDTGMHRLGVLPEQADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQ 174

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235
           L  F        G + S+A+S GILL P  H    RPGI LYG +   N+       Q  
Sbjct: 175 LACFDAFTQGKPGAQ-SIAASGGILLWPQAHRDRVRPGIILYGVSPLDNEDAAHFGFQPA 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + +I +R+  AGE V YG      RD+ + V A+GY DGYP               
Sbjct: 234 MTFTSHLIAVREHKAGEAVGYGSTWTSPRDTRLGVVAVGYGDGYPRCA-----------P 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    I G  VP+ G+++MDM   D+      +VGD   ++GP + ++ +A  +G + Y
Sbjct: 283 AGTPVLINGREVPLSGRVSMDMITIDLGPDAQDKVGDEAILWGPALSVERIAAHTGVSAY 342

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ R+  R    YT
Sbjct: 343 ELITRLTQRATLEYT 357


>gi|194289835|ref|YP_002005742.1| alanine racemase [Cupriavidus taiwanensis LMG 19424]
 gi|226711038|sp|B3R2F9|ALR_CUPTR RecName: Full=Alanine racemase
 gi|193223670|emb|CAQ69677.1| alanine racemase 2, PLP-binding [Cupriavidus taiwanensis LMG 19424]
          Length = 373

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 161/367 (43%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL NN   +   + +AR  AVVK NAYG G  ++  AL   G   F +  
Sbjct: 3   RPIQAVIHQPALANNLDVIRRKAPDARVWAVVKANAYGHGIRRVFAALR--GADGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E V LR    Q  I +L G   P    +I    L   I    QL         G    
Sbjct: 61  LNEAVLLRDLGWQGPILLLEGFFQPQDIALIEQYRLTTAIHCDEQLRMLESARPKG-PLA 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NRLG    E       +         + ++H + AD P     + Q+E F 
Sbjct: 120 IQLKLNTGMNRLGFHPAEYRAAWERARAMPCVGSIVHMTHFSDADGPRGI--AHQVEAFD 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
              ++  G EASL++S+ +L  P  H    RPGI LYG +     +      +Q  ++  
Sbjct: 178 AATANLPG-EASLSNSAAVLWHPQAHRAWVRPGIILYGASPTGRDADIAGTGLQPAMSLH 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG      R   I V A GYADGYP   SG   + +P       
Sbjct: 237 SELIAVQDLQPGDTVGYGSLFTAERPMRIGVVACGYADGYPRHASGWGEQRAP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T      VG  + ++G  + +D+VA ASGT  Y+L+ 
Sbjct: 290 VLVDGVRTELVGRVSMDMLCVDLTPCPKARVGSPVTLWGQGLPIDEVAQASGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALAPRVP 356


>gi|291482873|dbj|BAI83948.1| D-alanine racemase [Bacillus subtilis subsp. natto BEST195]
          Length = 389

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/384 (26%), Positives = 166/384 (43%), Gaps = 30/384 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +  F R    +IDL+A+K N  +M    G +    AVVK NAYG G  + A A  +AG
Sbjct: 1   MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR    +A I VL  + P    I  + ++     SV  L   ++  
Sbjct: 61  ASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHT 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVN 175
             G    + L+VDTG NRLG+  +E +       ++    +   + +H A AD+      
Sbjct: 121 KKGY-LHFHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229
            +Q ERF+ LI+    K +    A+S+  L      F   R GI +YG     +      
Sbjct: 180 LMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADISDEIP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++   T  + +  ++    GE VSYG +    +D+ I    +GYADG+   L G D  
Sbjct: 240 FQLRPAFTLHSTLSHVKLIRKGESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGTDI- 298

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       +KG  + I G+I MD  M ++        G  + + G      I +D+
Sbjct: 299 -----------LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY++   I +R  + +
Sbjct: 346 IAGRLETINYEVACTISSRVPRMF 369


>gi|78485703|ref|YP_391628.1| alanine racemase [Thiomicrospira crunogena XCL-2]
 gi|78363989|gb|ABB41954.1| alanine racemase [Thiomicrospira crunogena XCL-2]
          Length = 356

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/366 (27%), Positives = 161/366 (43%), Gaps = 18/366 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I L AL+ N   +   + +++  A++K N YG G E++A  L  A    + V  
Sbjct: 4   RPVKALIHLNALQQNLRQVKTFAPDSKVLAIIKSNGYGHGIERVAGQL--AQADGYGVAC 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E + LR       I +L G+    +  I     L   + S  QL +     S      
Sbjct: 62  IDEAIVLRQKGFLHPIVLLEGLFSEVELAIAIQHRLEFAVHSFLQLEWLKN-SSIKTPLN 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +RLG    E                  ++SH A AD+        QL+ F 
Sbjct: 121 IWLKLDTGMHRLGFQAHEIQKVIAELKALSAPVNIHLMSHFASADESE-SFTRQQLQVFN 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            +    K    S+A+S+ +   P  H    RPGI LYG          ++ V+T  + II
Sbjct: 180 QVAETLKC-PRSIANSAAVQWFPESHLDWVRPGIMLYGACATSETVPGLKPVMTLMSEII 238

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            ++    GE V YG   +  R SLIAV AIGY DGYP                G    I+
Sbjct: 239 SLKWIETGETVGYGQTWQAPRRSLIAVVAIGYGDGYPRHA-----------PSGTPVLIQ 287

Query: 304 GYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           G  +P++G+++MDM   D+T+    + +GD   ++G  + +D +A A GT  Y+LL  + 
Sbjct: 288 GKKMPLVGRVSMDMITVDVTELADKVAIGDEAVLWGQGLPVDVIANACGTIGYELLCGVT 347

Query: 363 TRYAKF 368
            R  + 
Sbjct: 348 QRVPRI 353


>gi|187779670|ref|ZP_02996143.1| hypothetical protein CLOSPO_03266 [Clostridium sporogenes ATCC
           15579]
 gi|187773295|gb|EDU37097.1| hypothetical protein CLOSPO_03266 [Clostridium sporogenes ATCC
           15579]
          Length = 397

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 162/384 (42%), Gaps = 27/384 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            ++  +  +++L  L  N  ++          AVVK N YG G   IA  L   G     
Sbjct: 11  RNHRPVWEEVNLDNLSYNMKNIKNKVKCKEIFAVVKANGYGHGAVDIASTLLENGATRLS 70

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120
           V  + E ++LR       I +L        + I + N+ PV+ S       SK       
Sbjct: 71  VACLSEAIELREGGITCPINILGITPSTLFEDIINYNIEPVVFSYDYAYQLSKAACQKNR 130

Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+    E+L+      N    ++  + SH + +D+     +  Q 
Sbjct: 131 IVKTHIAVDTGMGRLGVDPTVESLEEIKKIQNLSNIKIEGLCSHFSSSDEKDKSYSEYQF 190

Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231
           +RF+        +        +A+S+ I+  PN +    R GI LYG    +    ++  
Sbjct: 191 KRFQHFRKKLIEMNIKIPIHHMANSAAIIDLPNTYLDGVRAGIILYGYYPSMEVNKENLH 250

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T +A I+ I+   +G+ V Y  + K  R S +A+  +GY DGY   LS       
Sbjct: 251 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSRVAILPLGYGDGYTRFLSNR----- 305

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345
                 GK  I G   PI+G I MD  M D+TD   ++VGD   I G D         +D
Sbjct: 306 ------GKVIINGQYAPIIGNICMDQCMIDVTDIKEVKVGDEAIIIGKDYINNLKYDAED 359

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           ++   G T+ +++  I  R  + Y
Sbjct: 360 ISSQVGMTSGEIMSIISKRVPRVY 383


>gi|315649168|ref|ZP_07902258.1| alanine racemase [Paenibacillus vortex V453]
 gi|315275387|gb|EFU38745.1| alanine racemase [Paenibacillus vortex V453]
          Length = 395

 Score =  390 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 163/380 (42%), Gaps = 30/380 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +I+L  L+ N++    AL  +    A VK NAYG G  ++A  L   G     V  ++E
Sbjct: 10  AEINLDHLRANYNVFREALPKHMELLACVKANAYGHGAVEVARELQQLGAAYLSVAFLDE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
            ++LR       I VL    P   +  ++ ++   + S   L     L +         +
Sbjct: 70  ALELRQGGISIPILVLGYTPPEAVETAYEYDVTITLFSSEVLKAIKALPVKPEKPLKVHI 129

Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++D+G  RLGL   ++AL F   + +     +  + +H A AD+ +      Q  RF+ +
Sbjct: 130 KIDSGMGRLGLLPGEDALTFIEEACSLPQVVVEGMFTHFARADEHNKDYTLEQYRRFQGV 189

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVT 237
               +     +      +S+  +  P   + + R GISLYG         K+  ++ V+T
Sbjct: 190 ADALRDKGYHIPIIHTGNSAAAIDTPELSYNMVRIGISLYGLYPSDEVNRKAVSLRPVMT 249

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + +++ ++       +SYG +    ++  I    IGYADG+   LSG            
Sbjct: 250 LKTKLVYVKNLPPHSGISYGSKYVTEQEERIGTLPIGYADGFSRMLSG-----------K 298

Query: 298 GKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD----IKLDDVALA 349
            +  I+G   P++G I MD  M  +     ++  I+ G+ + + G      I  D++A  
Sbjct: 299 AEVLIRGRRAPVVGNICMDQCMVSLKPFAEEAEQIKAGEEVVLIGQQSGECITADELAAK 358

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y+++  I  R  + Y
Sbjct: 359 LGTIHYEVVCMIAHRVPRQY 378


>gi|160931457|ref|ZP_02078853.1| hypothetical protein CLOLEP_00290 [Clostridium leptum DSM 753]
 gi|156869522|gb|EDO62894.1| hypothetical protein CLOLEP_00290 [Clostridium leptum DSM 753]
          Length = 396

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 168/386 (43%), Gaps = 32/386 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    ++DL AL +N   +  A++ +A+   V+K + YG G   +A     AG   F V+
Sbjct: 6   KRTWAQVDLDALDHNIREIRSAIAPSAKLMCVIKADGYGHGAVPLAKESEAAGADWFAVS 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSH 122
           ++EE  +LR    Q  I +L        +++    +   + S        S     G   
Sbjct: 66  NLEEAQELREAGIQKPILILGFTPDSDARLLAQMEISQAVLSESHARQLSSYAQEAGTRV 125

Query: 123 PYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPS--SHV 174
              + VDTG  R+GLS Q       A              L  + +H A AD+    +  
Sbjct: 126 RVHIAVDTGMTRIGLSAQNQTQALEAAAAARRIAELPGLLLEGLFTHFAVADEAEAGADY 185

Query: 175 NSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK--IN 227
              Q + FR +    KG          ++S+GIL  P  +F L R GI LYG      + 
Sbjct: 186 TKRQYQSFRLVADTLKGWGISIPFCHCSNSAGILDYPEMNFNLVRAGIILYGLEPSSKVR 245

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           +   ++ ++  ++ + +++    G  VSYG      R++ IA   IGYADGYP  LS L 
Sbjct: 246 RPLDLRPLMELKSVVSMVKTVGPGVDVSYGRTYTTRRETKIATVPIGYADGYPRALSNL- 304

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G+  ++G    I+G++ MD  M D+T    +E GD + +FG D    + +
Sbjct: 305 ----------GEMLVRGQRARIIGRVCMDQLMLDVTHIPDVEEGDVVTVFGRDGGAFLPV 354

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           ++V+    T NY+ + +I  R  + Y
Sbjct: 355 EEVSSLDQTINYETVCQITKRVPRIY 380


>gi|284929657|ref|YP_003422179.1| alanine racemase [cyanobacterium UCYN-A]
 gi|284810101|gb|ADB95798.1| alanine racemase [cyanobacterium UCYN-A]
          Length = 400

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 165/376 (43%), Gaps = 23/376 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   ++IDL AL  N   +  L S      AVVK + YG G   +A  +  AG     V 
Sbjct: 26  QRAWMQIDLDALTYNVTQIKNLLSTGTALMAVVKADGYGHGGVTVAKTVLKAGANALAVA 85

Query: 64  SVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
           ++ EG++LR     + I VL     P +       NL   I  + Q    S+ L      
Sbjct: 86  TLMEGIELREAGVNSPILVLGVTNTPEEVVANIHWNLEATICCLEQAFMISRTLSQYKKQ 145

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L++DTG +RLG    +              +LS I SHL+ +DDP      +Q +R
Sbjct: 146 LSVHLKLDTGMSRLGTPWYQGTRLIKLVHKLPYLKLSGIYSHLSASDDPDKESIELQHQR 205

Query: 182 FRTLISHYKG---IEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVV 236
           F T++S  K         A+S+  +  P  H+ L R G++LYG   +  +     ++ ++
Sbjct: 206 FETVVSDLKNQNKFCLHFANSAATINYPQLHYNLVRVGLALYGIYPSPHLRSQVSLKPIL 265

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             +A+I  I+    G  VSYG Q       +IA+ +IGYADG P  LS            
Sbjct: 266 QVKAKITQIKTISQGTKVSYGNQFTSKHSMIIAIVSIGYADGVPRNLSNRL--------- 316

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             +  I G     +G ITMD  + D++    I+VGD + + G D    I  +D AL  GT
Sbjct: 317 --QVLIHGQRAHQIGAITMDQLILDVSHVKDIKVGDIVTLIGKDGEQEITANDWALELGT 374

Query: 353 TNYDLLVRIGTRYAKF 368
            ++++L     R  + 
Sbjct: 375 ISWEILCGFKRRLPRV 390


>gi|291536141|emb|CBL09253.1| alanine racemase [Roseburia intestinalis M50/1]
          Length = 389

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 167/385 (43%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-Q 58
           M+    +  +IDL A+ +N  +M   ++ + +  AV+K + YG G  +IA  +       
Sbjct: 1   MNRYSRVHAEIDLDAILHNMDAMRGNIAKDTKIMAVIKADGYGHGAVEIAETIEKLDYLY 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
            + V +VEEG+ LR +  Q  I +L  + P Q   +    + P + +       S    S
Sbjct: 61  GYAVATVEEGLILRNHGIQKPILILGYVFPDQYVDMIKAGIRPTVFTREMAEKLSVAAAS 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G        +DTG +R+G  + +EA D            +  I +H A AD+       
Sbjct: 121 IGRDCKIHFAIDTGMSRIGYQVTEEAADEMAQLSKLPHIIVEGIFTHFAKADEKDKEPTY 180

Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q++ FR +I   +      +    ++S+GI+  P  +  + R GI+LYG     +    
Sbjct: 181 QQIKLFRKMIDMLEERGVSILIHHCSNSAGIVDIPEANMDMVRAGITLYGMWPSEDVDKT 240

Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               +  ++    +  +++  AG  +SYGG        +IA   +GYADGY   LS    
Sbjct: 241 AISLKPALSLVTHVAYVKELPAGRAISYGGTYVTKEPRMIATIPVGYADGYARGLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G   PILG++ MD  M D+TD   ++  D + + G D    I ++
Sbjct: 298 --------KGAVLIHGRRAPILGRVCMDQFMVDVTDIPDVKNEDEVILIGRDGDECITME 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +V   SG  NY+    +G R  + Y
Sbjct: 350 EVGGLSGRFNYEFACDLGKRIPRVY 374


>gi|92117813|ref|YP_577542.1| alanine racemase [Nitrobacter hamburgensis X14]
 gi|91800707|gb|ABE63082.1| alanine racemase [Nitrobacter hamburgensis X14]
          Length = 398

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 182/365 (49%), Gaps = 11/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  A VVK +AYG G   +  AL  AG + FFV +++E 
Sbjct: 34  LTVDLDAIVANWRKLEKTAVPAECAGVVKADAYGCGARPVVRALSAAGCRTFFVATLDEA 93

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
              R   P A I+VL GI           N  PVI  + +L  +       G +   A+ 
Sbjct: 94  RVARAAAPSADIYVLDGIFQNCADAFAAINCRPVIGDLNELAEWDVFCRRTGWAGGAAIH 153

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG +L EA            G ++L++SHLACA+  +  +N+ Q+  FR +  
Sbjct: 154 IDTGMNRLGFTLDEAQAILPRIDAGDHG-ITLVMSHLACAETLNHPLNARQVAAFREIAR 212

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASLA+SSGI LGP Y F L RPG++LYG        +PMQ VV  +ARI+  R 
Sbjct: 213 LFSGVPASLANSSGIFLGPQYQFDLVRPGVALYGVNPTPEADNPMQPVVELKARIVQTRT 272

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R + +A+ A GYADGY           S     G    + G   
Sbjct: 273 IDKGESVGYGATWTARRTTRLAIVATGYADGYFRA------GGSNDGTRGADVVVAGTRC 326

Query: 308 PILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           P+ G+I+MD+   DITD      +  G    + G  I +D++A   GT  Y++L  +G R
Sbjct: 327 PVAGRISMDLLAIDITDLPPNAGVRRGHLATLIGDGITVDELAHHFGTIGYEVLTSLGGR 386

Query: 365 YAKFY 369
           Y + Y
Sbjct: 387 YRRIY 391


>gi|300214211|gb|ADJ78627.1| Alanine racemase [Lactobacillus salivarius CECT 5713]
          Length = 371

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/383 (26%), Positives = 169/383 (44%), Gaps = 33/383 (8%)

Query: 3   SNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   R  I L A+K+N    ++ L  +    AVVK NAYG G   +A A   AG   F 
Sbjct: 5   RHRNTRAIISLEAIKHNVATQISKLKDSQSLFAVVKANAYGHGMIPVAKAAKEAGANGFC 64

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLM-SCG 119
           V  ++EG+ LR    +  I +L G++P  E +     +L   + ++  LT   KL+    
Sbjct: 65  VAIIDEGIALRESGIKDPILIL-GVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEK 123

Query: 120 VSHPYALQVDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            S    L +DTG  R+G      L+EA+DF     ++   +   + +H + AD       
Sbjct: 124 QSLKIHLALDTGMGRIGFRNTEDLKEAVDFIEKHSDQ--LKCEGVFTHFSTADSKDPAYF 181

Query: 176 SVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSH 230
             Q ++F  L+   K        A+S+  L  PN+   L R GIS+YG       I+++ 
Sbjct: 182 EKQSQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDVIDETW 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++ E+ ++ +++  AG  + YG     ++   I    IGYADG+   + G     
Sbjct: 242 NLEPALSLESELVAVKEVEAGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF---- 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   K  I G    I+G++ MD  M  +     +  G  + + G +    I   DV
Sbjct: 298 --------KVLIDGQYCEIVGRVCMDQFMVRLPKKYDL--GTKVTLIGENNGKVITAQDV 347

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + T +Y+++  I  R  + Y
Sbjct: 348 ANYADTIHYEIMCNITERVPRIY 370


>gi|170719388|ref|YP_001747076.1| alanine racemase [Pseudomonas putida W619]
 gi|169757391|gb|ACA70707.1| alanine racemase [Pseudomonas putida W619]
          Length = 357

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 173/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ S+ QL    K         
Sbjct: 60  IEEALELRAAGIKAPMLLLEGFFEASELSLIAEHDLWCVVHSLWQLEAIEK-TPVHKPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL  ++  +              +++SH A AD+  +     Q+  F 
Sbjct: 119 LWLKLDSGMHRVGLHPKDYHEAYQRLLASGKVARIVLMSHFARADELDADATEQQIAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
                    E SL +S G+L  P+      RPGI LYG T       ++  +Q V+T ++
Sbjct: 179 AARQGLAA-ECSLRNSPGVLAWPHAPSDWVRPGIMLYGATPFEVAQAQAERLQPVMTLQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RVISVRELPAGEPVGYGAKFISPRPTRVGVVAMGYADGYPRQA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+TD     +G  ++++G  +   +VA+ +GT  Y +   
Sbjct: 287 MVAGKRSQLIGRVSMDMLCIDLTDVPEATIGSPVELWGKHVLASEVAMHAGTIPYQIFCN 346

Query: 361 IGTRYAKFY 369
           +  R    Y
Sbjct: 347 L-KRVPLDY 354


>gi|218894405|ref|YP_002443275.1| alanine racemase [Pseudomonas aeruginosa LESB58]
 gi|218774634|emb|CAW30451.1| catabolic alanine racemase [Pseudomonas aeruginosa LESB58]
          Length = 357

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 169/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EEG++LR    +  I +L G     E ++I   +   V+    QL    +  S      
Sbjct: 60  IEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERA-SLARPLN 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+G   ++                 +++SH + AD+        QL  F 
Sbjct: 119 VWLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFA 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                 +G E SL +S  +L  P       RPGI LYG T        +  ++ V+T E+
Sbjct: 179 AASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R   AGE V YG +    R   I V A+GYADGYP   +            G   
Sbjct: 238 KVISVRDLPAGEPVGYGARYSTERSQRIGVVAMGYADGYPRHAA-----------DGTLV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL  
Sbjct: 287 FIDGNPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-KRVPRVYS 355


>gi|253991385|ref|YP_003042741.1| alanine racemase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782835|emb|CAQ86000.1| alanine racemase) [Photorhabdus asymbiotica]
          Length = 359

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 171/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +   AVVK NAYG G  + A  L +     F V  + E 
Sbjct: 6   AVIDRRALRHNLQRVREIAPKSNLIAVVKANAYGHGLLETAHTLDD--ADCFGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     +  ++   ++  V+ S+ QL    +           ++
Sbjct: 64  LTLRHGGIVKPILLLEGCFDAADLPVLVANHIETVVHSIEQLEALEQA-KLSHPVKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++A +F       K + Q   I+SH   AD+P+      Q+  F+   
Sbjct: 123 LDSGMHRLGVRPEDAEEFYQRLSRCKNVQQPVNIVSHFGRADEPTLDTTCQQIACFQAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +   G E S+ +S GILL P  H    RPG+ +YG +    K      +   +T ++ +I
Sbjct: 183 ADKPG-EKSIDASGGILLWPEVHQDWVRPGLMMYGVSPLSDKTAADFNLMPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK  AGE V YGG     RD+ + V AIGY DGYP                G   +I 
Sbjct: 242 AVRKHKAGEAVGYGGTWISERDTCLGVVAIGYGDGYPRCA-----------PSGTPIYIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +VGD   ++G  + ++ +A  +G   Y+L+ ++ +
Sbjct: 291 GREVPIAGRVSMDMISVDLGPDAADKVGDEAVLWGDVLPVERIAECTGIITYELVTKLTS 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RVVMEY 356


>gi|301301060|ref|ZP_07207220.1| alanine racemase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851330|gb|EFK79054.1| alanine racemase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 371

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/383 (26%), Positives = 167/383 (43%), Gaps = 33/383 (8%)

Query: 3   SNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   R  I L A+K+N    ++ L       AVVK NAYG G   +A A   AG   F 
Sbjct: 5   RHRNTRAIISLEAIKHNVATQISKLKDGQSLFAVVKANAYGHGMIPVAKAAKEAGANGFC 64

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLM-SCG 119
           V  ++EG+ LR    +  I +L G++P  E +     +L   + ++  LT   KL+    
Sbjct: 65  VAIIDEGIALRESGIKDPILIL-GVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEK 123

Query: 120 VSHPYALQVDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            S    L +DTG  R+G      L+EA+DF     ++   +   I +H + AD       
Sbjct: 124 QSLKIHLALDTGMGRIGFRNTEDLKEAVDFIEKHSDQ--LKCEGIFTHFSTADSKDPAYF 181

Query: 176 SVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSH 230
             Q ++F  L+   K        A+S+  L  PN+   L R GIS+YG       I+++ 
Sbjct: 182 EKQSQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDVIDETW 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++ E+ ++ +++   G  + YG     ++   I    IGYADG+   + G     
Sbjct: 242 NLEPALSLESELVAVKEVEVGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF---- 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   K  I G    I+G++ MD  M  +     +  G  + + G +    I   DV
Sbjct: 298 --------KVLIDGQYCEIVGRVCMDQFMVRLPKKYDL--GTKVTLIGENNGKVITAQDV 347

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + T +Y+++  I  R  + Y
Sbjct: 348 ANYADTIHYEIMCNITERVPRIY 370


>gi|295697553|ref|YP_003590791.1| alanine racemase [Bacillus tusciae DSM 2912]
 gi|295413155|gb|ADG07647.1| alanine racemase [Bacillus tusciae DSM 2912]
          Length = 375

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 153/378 (40%), Gaps = 24/378 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
               ++DL+A+++N  S   L+ +A   AVVK + YG G   +A A   AG +   V  +
Sbjct: 9   LTWAEVDLSAIRHNVASFRQLTRDAEIMAVVKADGYGHGAVPVAKAALEAGARRLAVARL 68

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPY 124
           EEG+ LR    +  I +L  I PG  + +   +L   +          +           
Sbjct: 69  EEGLALRKAGIRVPILILGWIDPGTARELVAGDLEVAVFDPAHIPPLAAAAREVHKRAGV 128

Query: 125 ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            +++DTG  R+G   + +AL +          ++    +H A AD         Q +RF 
Sbjct: 129 HIKIDTGMGRIGWRDMDQALKWAAELNRVPEVEIRGTFTHFAAADAEDLTHARGQWKRFD 188

Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVV 236
             +        +      A+++  L  P  H+   R GI LYG         S  ++  +
Sbjct: 189 RWVKSLESQGMRPPLIHAANTAAALSLPEAHYDALRVGIGLYGYLPNPGWKGSVVLRPAL 248

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              AR++ ++    G  +SYG   +      I   A+GY DG    LS            
Sbjct: 249 RWMARLVYVKWVEPGAAISYGCTYRAPARRRIGTVAVGYGDGLRRGLSN----------- 297

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
            G   + G   PI+G++ MD TM D+T+      GD + + G D       DD A    T
Sbjct: 298 AGYMLVHGRRAPIVGRVCMDQTMVDLTNIPEARSGDVVTVLGDDGDESWTADDHARLLDT 357

Query: 353 TNYDLLVRIGTRYAKFYT 370
            +Y++L  IG R  + Y 
Sbjct: 358 ISYEILCGIGKRVPRRYV 375


>gi|251788347|ref|YP_003003068.1| alanine racemase [Dickeya zeae Ech1591]
 gi|247536968|gb|ACT05589.1| alanine racemase [Dickeya zeae Ech1591]
          Length = 358

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 168/374 (44%), Gaps = 23/374 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +       ID  AL++N   +  ++  +R  A+VK NAYG G  + A A  +     +
Sbjct: 1   MKT---ATAVIDRQALRHNLQHIRQMAPQSRLIAIVKANAYGHGAVEAARAFSD--ADGY 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V+ + E + LR       I +L G     E  ++ +  L   +    QL    +     
Sbjct: 56  GVSRLSEALALRTAGITKPILLLEGFFAADELPLLAEHQLETAVHCEEQLAALEQA-HLP 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 +++DTG +RLG+  Q+A  F         + Q   I+SH   AD+P +     Q
Sbjct: 115 HPLTVWMKLDTGMHRLGVLPQQAEAFYARLSRCSNVVQPVNIMSHFCRADEPQTDTTQRQ 174

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235
           L+ F        G + S+A+S GILL P  H    RPGI  YG +           ++  
Sbjct: 175 LDCFDAFAQGKPGRQ-SIAASGGILLWPQAHRDQIRPGIIQYGVSPLAEGDASQWQLKPA 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  +R+I +R+  AGE V YG      RD+ + V AIGY DGYP               
Sbjct: 234 MTLTSRLIAVREHPAGEPVGYGSLWSSPRDTRLGVIAIGYGDGYPR-----------DAK 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   +I G  VP+ G+++MDM   D+      +VGD + ++G  + ++ +A  +G + Y
Sbjct: 283 SGTPVWINGREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGGPLPVEKIAAHNGISAY 342

Query: 356 DLLVRIGTRYAKFY 369
           +L+ R+  R    Y
Sbjct: 343 ELITRLTARTELEY 356


>gi|240147271|ref|ZP_04745872.1| alanine racemase [Roseburia intestinalis L1-82]
 gi|257200543|gb|EEU98827.1| alanine racemase [Roseburia intestinalis L1-82]
          Length = 389

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 168/385 (43%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-Q 58
           M+    +  +IDL A+ +N  +M   ++ + +  AV+K + YG G  +IA  +       
Sbjct: 1   MNRYSRVHAEIDLDAILHNMDAMRGNIAKDTKIMAVIKADGYGHGAVEIAETIEKLDYLY 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
            + V +VEEG+ LR +  Q  I +L  + P Q   +    + P + +       S    S
Sbjct: 61  GYAVATVEEGLILRNHGIQKPILILGYVFPDQYVDMIKAGIRPTVFTREMAEKLSVAAAS 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G        +DTG +R+G  + +EA D            +  I +H A AD+       
Sbjct: 121 IGRDCKIHFAIDTGMSRIGYQVTEEAADEMAQLSKLPHIIVEGIFTHFAKADEKDKEPTY 180

Query: 177 VQLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q++ FR +I     +G+       ++S+GI+  P  +  + R GI+LYG     +    
Sbjct: 181 QQIKLFRKMIDMLEERGVSIPIHHCSNSAGIVDIPEANMDMVRAGITLYGMWPSEDVDKT 240

Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               +  ++    +  +++  AG  +SYGG        +IA   +GYADGY   LS    
Sbjct: 241 AISLKPALSLVTHVAYVKELPAGRAISYGGTYVTKEPRMIATIPVGYADGYARGLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G   PILG++ MD  M D+TD   ++  D + + G D    I ++
Sbjct: 298 --------KGAVLIHGRRAPILGRVCMDQFMVDVTDIPDVKNEDEVILIGRDGDECITME 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +V   SG  NY+    +G R  + Y
Sbjct: 350 EVGGLSGRFNYEFACDLGKRIPRVY 374


>gi|238794660|ref|ZP_04638266.1| Alanine racemase 1 [Yersinia intermedia ATCC 29909]
 gi|238726049|gb|EEQ17597.1| Alanine racemase 1 [Yersinia intermedia ATCC 29909]
          Length = 359

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 171/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  I+    +   + S+ QL                ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFAAEDLPILVANRIETAVHSIEQLEALEAA-DLPAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       + + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGVRPEQADAFYQRLCACRNVIQPVNIMSHFSRADEPEVETTHQQLACFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI LYG +           +   +  ++ +I
Sbjct: 183 IGKPGKQ-SIAASGGILLWPQAHRDWVRPGIILYGVSPMDEPYASHFDLLPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG      D+ + V AIGY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGEPVGYGGTWVSEHDTRLGVVAIGYGDGYPRSA-----------PSGTPMWVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+  + S +VGD + ++G D+ ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GREVCIVGRVSMDMISVDLGPNSSDKVGDEVLLWGADLPVEKIAAYTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|396388|gb|AAC43147.1| alanine racemase [Escherichia coli str. K-12 substr. MG1655]
          Length = 358

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 171/368 (46%), Gaps = 22/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +   +  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLREXAPASKMVAVVKANAYGHGLLETARTLPD--ADAFXVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +             Q V++  + +
Sbjct: 183 EGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V A+GY DGY             +   G    +
Sbjct: 242 IAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGY------------XAAPSGTPVLV 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ 
Sbjct: 290 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLT 349

Query: 363 TRYAKFYT 370
           +R A  Y 
Sbjct: 350 SRVAMKYV 357


>gi|83644553|ref|YP_432988.1| alanine racemase [Hahella chejuensis KCTC 2396]
 gi|123534099|sp|Q2SLB1|ALR_HAHCH RecName: Full=Alanine racemase
 gi|83632596|gb|ABC28563.1| alanine racemase [Hahella chejuensis KCTC 2396]
          Length = 374

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/378 (27%), Positives = 174/378 (46%), Gaps = 25/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N   +N+++ NAR AAV+K +AYG G  +IA AL         V  
Sbjct: 2   RPSRALIDLDALRHNIRLLNSIAHNARCAAVIKADAYGHGAVEIARAL-KGEAPKLAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT--NLIPVISSVPQLTFYSKLMSCGVSH 122
            +E V LR       + VL G +  +E        ++  V+  + QL   S++     + 
Sbjct: 61  YDEAVSLREAGVTTPLLVLEGFYSSEELADSTRWCDIEWVVHDMEQLDMLSEVAPLRKAG 120

Query: 123 P------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           P        ++++TG NRLGL L +               +  +++H ACAD+  S +  
Sbjct: 121 PDSTRMQTWIKLNTGMNRLGLPLNKLAHVAEKLQQFPGLSVIGLMTHFACADELDSLLQQ 180

Query: 177 VQLERFRT--LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHP 231
            Q   F+     +   G   S A+S+ +L  P  H    RPGI++YG +   +K      
Sbjct: 181 RQWRAFQAGMQAAGANGWSYSSANSAALLQYPETHLDWVRPGIAMYGASPMADKTGADFG 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T E+R+I  R+  AG+ + YG        + + V A+GY DGYP  +        
Sbjct: 241 LKPVMTFESRLIATRELQAGDSIGYGAAWTADAPTRMGVVAVGYGDGYPRQMQN------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                G    + G    I+G+++MDM   DI+      +G  ++++G  +  D+VA  + 
Sbjct: 295 -----GAPVAVCGKRTKIIGRVSMDMLTVDISHIPEARIGSEVELWGGTVSADEVAGYAS 349

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y L   + +R  + Y
Sbjct: 350 TISYTLFTGMTSRVPRVY 367


>gi|37523387|ref|NP_926764.1| alanine racemase [Gloeobacter violaceus PCC 7421]
 gi|35214391|dbj|BAC91759.1| alanine racemase [Gloeobacter violaceus PCC 7421]
          Length = 381

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 174/379 (45%), Gaps = 26/379 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +     ++IDL AL++N   +   L  + R  AVVK +AYG G      A   AG     
Sbjct: 6   ATRRAWVEIDLDALRHNVQQIRQRLRSHCRVMAVVKADAYGHGALSAGRAALEAGAACLG 65

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGV 120
           V ++EEG +LR       I VL  IH G E    +   L P + +  Q+   ++ +S   
Sbjct: 66  VATLEEGAQLRESGLGCPIVVLGPIHTGAEVAAVEHWRLEPTLCTPRQVLVCAEHLSA-- 123

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            HP  L++DTG  RLG   Q+A++F   ++     Q++ + SHLA AD+P S     Q  
Sbjct: 124 PHPVHLKIDTGMTRLGAPWQDAVEFVRLAYRLPRLQVASVYSHLATADEPDSAALGEQHR 183

Query: 181 RFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQ 233
           RF  ++     +  +     LA+S+  L  P  H+ L R G++LYG         +  ++
Sbjct: 184 RFERVLGELEAAGVRPECVHLANSAAALGDPGLHYDLVRVGVALYGLYPAPEFYGAAELR 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+   AR+  +R+  A   VSYG   +    S +A  AIGYADG P  LSG        
Sbjct: 244 PVMQVRARVTQVREVPADTGVSYGHFWRTPTPSRLATVAIGYADGVPRRLSGQL------ 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  + G   P +G ITMD  + D T   ++E GD + + G D    I   D A  
Sbjct: 298 -----QVLVHGRRAPQVGAITMDQIVIDCTHLSAVEEGDVVTLLGRDGNEAIGAADWADP 352

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            GT  Y++L     R  + 
Sbjct: 353 LGTIAYEILCGFKHRLPRV 371


>gi|291538997|emb|CBL12108.1| alanine racemase [Roseburia intestinalis XB6B4]
          Length = 389

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 168/385 (43%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-Q 58
           M+    +  +IDL A+ +N  +M   ++ + +  AV+K + YG G  +IA  +       
Sbjct: 1   MNRYSRVHAEIDLDAILHNMDAMRGNIAKDTKIMAVIKADGYGHGAVEIAETIEKLDYLY 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
            + V +VEEG+ LR +  Q  I +L  + P Q   +    + P + +       S    S
Sbjct: 61  GYAVATVEEGLILRNHGIQKPILILGYVFPDQYVDMIKAGIRPTVFTREMAEKLSVAAAS 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G        +DTG +R+G  + +EA D            +  I +H A AD+       
Sbjct: 121 IGRDCKIHFAIDTGMSRIGYQVTEEATDEMAQLSKLPHIIVEGIFTHFAKADEKDKEPTY 180

Query: 177 VQLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q++ FR +I     +G+       ++S+GI+  P  +  + R GI+LYG     +    
Sbjct: 181 QQIKLFRKMIDMLEERGVSIPIHHCSNSAGIVDIPEANMDMVRAGITLYGMWPSEDVDKT 240

Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               +  ++    +  +++  AG  +SYGG        +IA   +GYADGY   LS    
Sbjct: 241 AISLKPALSLVTHVAYVKELPAGRAISYGGTYVTKEPRMIATIPVGYADGYARGLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G   PILG++ MD  M D+TD   ++  D + + G D    I ++
Sbjct: 298 --------KGAVLIHGRRAPILGRVCMDQFMVDVTDIPDVKNEDEVILIGRDGDECITME 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +V   SG  NY+    +G R  + Y
Sbjct: 350 EVGGLSGRFNYEFACDLGKRIPRVY 374


>gi|227326007|ref|ZP_03830031.1| alanine racemase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 360

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/375 (27%), Positives = 170/375 (45%), Gaps = 23/375 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +       I+  AL++N   +  L+  ++  AVVK NAYG G  + A    +     +
Sbjct: 1   MKT---ATAVINRRALRHNLQRIRQLAPGSQVVAVVKANAYGHGMIEAAHTFCD--ADCY 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  + E + LR       I +L G     +  ++ +  L   +    QL    +  +  
Sbjct: 56  GVARLSEALALRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHCPEQLAALEQA-TLP 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
              P  +++D+G +RLG+  + A  F       + + Q   I+SH   AD+P +     Q
Sbjct: 115 QPIPVWMKLDSGMHRLGVLPEHADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQ 174

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235
           L  F        G + S+A+S GILL P  H    RPGI LYG +   N+       Q  
Sbjct: 175 LACFDAFTQGKPGAQ-SIAASGGILLWPQSHRDRVRPGIILYGVSPLDNEDAAHFGFQPA 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + +I +R+  +GE V YGG     R++ + V A+GY DGYP               
Sbjct: 234 MTFTSHLIAVREHNSGEAVGYGGTWTSPRNTRLGVVAVGYGDGYPRCA-----------P 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G  VP+ G+++MDM   D+      +VGD + ++GP + ++ +A  +G + Y
Sbjct: 283 AGTPVLVNGREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGPTLPVERIAAHTGASAY 342

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ R+  R A  Y 
Sbjct: 343 ELITRLTQRTALEYV 357


>gi|328952024|ref|YP_004369358.1| Alanine racemase [Desulfobacca acetoxidans DSM 11109]
 gi|328452348|gb|AEB08177.1| Alanine racemase [Desulfobacca acetoxidans DSM 11109]
          Length = 399

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 164/379 (43%), Gaps = 24/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N  + L +DL AL+ N+  +    G   +  AV+K +AYG G   +A  L  AG   F V
Sbjct: 29  NRMVELTVDLAALQYNFRQLRQYCGQKVKILAVIKADAYGHGLLPVAQVLAPAGADYFGV 88

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVS 121
               EGV LR       I +L G+ P +       +L   +          ++       
Sbjct: 89  AYCSEGVSLRQAGITLPILLLMGVLPEEAAEAVAHDLEVTLFCREMAAALAAQARQQSKK 148

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               +++DTG  RLGL   E + F  +       +L+ +ISH A +D         QL  
Sbjct: 149 VKVHVKIDTGMGRLGLLPTELMPFLESLGEFPELELAGLISHFAASDCCDRSYTHQQLAD 208

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
           F  L+   +G         +A+S+ +L     H  + R GI+LYG    +    P+  + 
Sbjct: 209 FERLLKGVRGRGWAVPASHIANSAAVLHVHQAHLNMVRAGITLYGSPPSLETPSPIPLKP 268

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++   R++ +++   G  +SYG      + SLIA   +GY +GY   +S          
Sbjct: 269 VMSLRTRVLQLQELPPGCSISYGRTYFTDKPSLIAALPVGYCNGYSRLMSNR-------- 320

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   + G   PI G++ M++TM D+T+   ++ GD   + G D    +  DD+A  +
Sbjct: 321 ---GCVLLHGQRAPIRGRVCMNLTMVDVTEIPGVKKGDMATLLGEDGSDRLTGDDLAAWA 377

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++   +G    + Y
Sbjct: 378 ETISYEIYCMMGNSNYRRY 396


>gi|313896008|ref|ZP_07829562.1| alanine racemase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975433|gb|EFR40894.1| alanine racemase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 368

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 97/376 (25%), Positives = 162/376 (43%), Gaps = 22/376 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++I+L A+ +N+  +      +A+  AVVK +AYG G   +A     AG +   +
Sbjct: 3   SRAAWVEINLGAIAHNYSEIRKHIQKDAKLCAVVKADAYGHGAIAVARKAIAAGAEYLAL 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            ++ E +KLR       + +L          I D ++   +  +      S    C   +
Sbjct: 63  ATISEALKLREAGFTTPLLILGLTKAENSFDIVDADITQTVCRLDLAEALSAEAVCQNKT 122

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L VDTG  R+G+  ++A        +    +L  + SH A AD         Q+  
Sbjct: 123 VKVHLAVDTGLGRIGVRPEDAASMARAIISLPNVELEGVFSHFALADTADKSFAMQQVRL 182

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
           F       +  GI      +A S+ IL  P+ HF + R GI  YG       + P+    
Sbjct: 183 FAEACDAIERAGIHIPIRHIAESAAILDLPDVHFDMVRAGIIQYGIWPSNEVTRPITLHP 242

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   ARI+ I+    G+ V YG      R++ IA  ++GYADG+               
Sbjct: 243 AMKFCARIVYIKTVAPGDSVGYGRAFIAPRETRIATISVGYADGFLRA------------ 290

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTT 353
           + GG   + G   PI G+I MD  M D+TD     +GD + +FG + +  D+VA  +GT 
Sbjct: 291 YAGGSVELHGRRAPIAGRICMDQCMIDVTDIPEAAIGDVVTLFGSETLTADEVAARAGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++L  +    ++ Y
Sbjct: 351 SYEVLCLVSKHVSRIY 366


>gi|224367598|ref|YP_002601761.1| Alr [Desulfobacterium autotrophicum HRM2]
 gi|223690314|gb|ACN13597.1| Alr [Desulfobacterium autotrophicum HRM2]
          Length = 387

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/383 (26%), Positives = 164/383 (42%), Gaps = 34/383 (8%)

Query: 11  IDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A+ +N  ++ AL+  +    AVVK +AYG G  ++A     +GV    V  + E +
Sbjct: 15  IDLDAIAHNLKTLRALTKAHTAVMAVVKADAYGHGAVRVAKKALESGVTHLGVARLHEAL 74

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQV 128
           +LR     A I V   I       +    + P +  +        + ++ G      L+V
Sbjct: 75  ELRNAGINAPILVFGYIPESDVDTLIALEVSPTVFDLETACMLSERAVAKGTHIKIHLKV 134

Query: 129 DTGFNRLGLSLQE---------ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           DTG  RLG+             AL            ++  I +H A AD         Q 
Sbjct: 135 DTGMGRLGILPDSRRPSSEKKGALAEVLTISALPGLKIEGIYTHFAAADTLDKGYAEYQH 194

Query: 180 ERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231
           + F   I   K  GIE  L   A+S+ ++  P  HF + R GI++YG         +S  
Sbjct: 195 QTFMAFIEGLKHLGIEIPLVHSANSAALIDLPEAHFNMVRAGIAMYGLAPSGEVDIRSLD 254

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +   + I  ++K      VSYG   +  ++++IA   IGYADG+    S       
Sbjct: 255 LRPAMEIHSIITSVKKVPKSFKVSYGMTYETEKETVIAAVPIGYADGFSRLFSSR----- 309

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 G+  ++G   PI G++ MD T+ D+ +   ++ GD + I G      I  D++A
Sbjct: 310 ------GEMIVRGRKAPIAGRVCMDQTLIDVGEIPGVKPGDEVVILGTQANQRITADEMA 363

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
              GT NY+++  +  R  K Y+
Sbjct: 364 ETIGTINYEVISSLTARVPKIYS 386


>gi|149907726|ref|ZP_01896473.1| alanine racemase [Moritella sp. PE36]
 gi|149809396|gb|EDM69325.1| alanine racemase [Moritella sp. PE36]
          Length = 357

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 172/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                +I L +L++N   +  ++ +++  AVVK NAYG G   +A AL +  V  F V  
Sbjct: 2   RSATAEICLQSLQHNVQQIKNIAPHSKIMAVVKANAYGHGLLAVASALTD--VDAFAVAR 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           VEE + LR       I +L G     E  I+   N+   +    QL    +         
Sbjct: 60  VEEALTLRSGGIVKPILLLEGFFSTDELPILVANNIQTSVHIEQQLDELEQA-DLEAPIH 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG+             N   + Q + +++H +CAD+    +   Q+  F
Sbjct: 119 VWLKMDTGMHRLGIRPDNCKRAIERLKNNPNVVQPARLMTHFSCADEADPSITQRQINIF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAE 239
             L++  +G E S+A+S+G+L  P+ H    RPGI LYG +  I  +   H ++ V+T  
Sbjct: 179 DELVAGEEG-EHSIANSAGVLAWPSAHRDWIRPGIMLYGVSPMIGATAVEHDLKPVMTLT 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +I +     GE   YGG    + D+ + V A+GY DGYP                G  
Sbjct: 238 TDLIAVHDIKKGETTGYGGIWSASTDTRLGVVAVGYGDGYPRMA-----------PEGTP 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G +VPI+G+++MDM   D+      +VGD + ++G  +  + VA   GT  Y+L+ 
Sbjct: 287 VLINGRIVPIVGRVSMDMLTVDLGVDCQDKVGDKVIMWGAGLPAELVAEHIGTIAYELVT 346

Query: 360 RIGTRYAKFY 369
           ++  R    Y
Sbjct: 347 KLTQRVTLKY 356


>gi|271501945|ref|YP_003334971.1| alanine racemase [Dickeya dadantii Ech586]
 gi|270345500|gb|ACZ78265.1| alanine racemase [Dickeya dadantii Ech586]
          Length = 358

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 170/374 (45%), Gaps = 23/374 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +       ID  AL++N   +  ++  +R  A+VK NAYG G  + A A  +     +
Sbjct: 1   MKT---ATAVIDRQALRHNLQRIRQMAPQSRLIAIVKANAYGHGALEAARAFSD--ADGY 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V+ + E + LR       I +L G     E  ++ +  L   + S  QL    +     
Sbjct: 56  GVSRLSEALVLRAAGITKPILLLEGFFDADELPLLAEHQLETAVHSEEQLAALEQAR-LP 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQ 178
                 +++DTG +RLG+  + A  F     N   + Q   I+SH   AD+P       Q
Sbjct: 115 HPLTVWMKLDTGMHRLGVLPEHADAFYTRLCNCTNVVQPVNIMSHFCRADEPEVDTTQRQ 174

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235
           L+ F   +    G + S+A+S GILL P  H    RPGI  YG +           ++  
Sbjct: 175 LDCFDAFVQGKPGRQ-SIAASGGILLWPQAHRDQIRPGIIQYGISPLAQGDASQWQLKPA 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  +++I +R+  AGE V YG      RD+ + V AIGY DGYP               
Sbjct: 234 MTLTSQLIAVREHHAGEPVGYGSNWVSPRDTRLGVVAIGYGDGYPRDAKN---------- 283

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G  VP+ G+++MDM   D+      +VGD + ++G  + +++VA  +G + Y
Sbjct: 284 -GTPVWVNGREVPLSGRVSMDMLTVDLGPDAQDKVGDEVILWGGPLPVENVAAYNGISAY 342

Query: 356 DLLVRIGTRYAKFY 369
           +L+ R+  R    Y
Sbjct: 343 ELITRLTARTQLEY 356


>gi|320529492|ref|ZP_08030578.1| alanine racemase [Selenomonas artemidis F0399]
 gi|320138286|gb|EFW30182.1| alanine racemase [Selenomonas artemidis F0399]
          Length = 368

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 98/376 (26%), Positives = 163/376 (43%), Gaps = 22/376 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++I+L A+ +N+  +      +A+  AVVK +AYG G   +A     AG +   +
Sbjct: 3   SRAAWVEINLGAIAHNYGEIRKHIQKDAKLCAVVKADAYGHGAIAVARKAIAAGAEYLAL 62

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            ++ E +KLR       + +L          I D ++   +  +      S    C   +
Sbjct: 63  ATISEALKLREAGFTTPLLILGLTKAENSFDIVDADITQTVCRLDLAEALSAEAVCQNKT 122

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L VDTG  R+G+  ++A        +    +L  + SH A AD         Q+  
Sbjct: 123 VKVHLAVDTGLGRIGVRPEDAASMARAIISLPNVELEGVFSHFALADTADKSFAMQQVRL 182

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234
           F       +  GI      +A S+ IL  P+ HF + R GI  YG       + P+  + 
Sbjct: 183 FAEACDAIEHAGIHIPIRHIAESAAILDLPDVHFDMVRAGIIQYGIWPSSEVTRPITLRP 242

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   ARI+ I+    G+ V YG      R++ IA  ++GYADG+               
Sbjct: 243 AMKFCARIVYIKTIAPGDSVGYGRAFIAPRETRIATISVGYADGFLRA------------ 290

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTT 353
           + GG   + G   PI G+I MD  M D+TD     VGD + +FG + +  D+VA  +GT 
Sbjct: 291 YAGGSVELHGRRAPIAGRICMDQCMIDVTDIPEAAVGDVVTLFGSETLTADEVAARAGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++L  +    ++ Y
Sbjct: 351 SYEVLCLVSKHVSRIY 366


>gi|313112921|ref|ZP_07798567.1| alanine racemase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624826|gb|EFQ08135.1| alanine racemase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 400

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 95/394 (24%), Positives = 163/394 (41%), Gaps = 35/394 (8%)

Query: 1   MHSNEF---LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M +  F   +  +IDL AL++N+ ++ A +G+    AVVK ++YG G  + A      G 
Sbjct: 1   MKTQPFEKHVWAEIDLDALRHNFRAVKARAGDLPLCAVVKADSYGHGAVQCARVFAQEGA 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116
               V+ + E V+LR       I +L  + P   + +   ++     S  Q    S    
Sbjct: 61  AWLAVSCLTEAVQLRQDGQTLPILILGHVQPEYAQTLIHEDITVACYSTEQAQNLSAAAV 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS----FNKKLGQLSLIISHLACADDPSS 172
             G      L+ DTG  R+G +L+   D               +++ +  H + ADD + 
Sbjct: 121 KAGGRVKIHLKADTGMGRIGFALRTDFDAAIREMLAVCELPGLEMTGLFQHFSVADDTAE 180

Query: 173 H---VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNY------HFQLTRPGIS 218
                 + Q   F       K            +S+G++L P++         + RPGI 
Sbjct: 181 ENVAYTAEQHALFVRAFHALKAAGREPQTVHCDNSAGVMLHPDWPEGLARERCMARPGII 240

Query: 219 LYGGTDKINKSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
           LYG            + V+T +  + ++++   G+  SYG +    + +L+A    GYAD
Sbjct: 241 LYGYDPSDEVRFGQFRPVMTLKTVVSMVKEMQPGQSASYGRRFTADKPTLVATLCTGYAD 300

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           GYP  LS             G   I G   P+LG++ MD  M D+T    I  GD   ++
Sbjct: 301 GYPRQLS----------CGKGIVEIHGKACPVLGRVCMDQMMVDVTGIPDIHEGDEAILW 350

Query: 338 GPDI--KLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G  +    + +A  + T +Y++L  +  R  + Y
Sbjct: 351 GGSVSDTAETIARKTDTISYEVLCGVSRRVPRVY 384


>gi|225016669|ref|ZP_03705861.1| hypothetical protein CLOSTMETH_00578 [Clostridium methylpentosum
           DSM 5476]
 gi|224950633|gb|EEG31842.1| hypothetical protein CLOSTMETH_00578 [Clostridium methylpentosum
           DSM 5476]
          Length = 388

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/387 (26%), Positives = 165/387 (42%), Gaps = 30/387 (7%)

Query: 1   MHS-NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           MHS       +I+L  L +N+  +    G  R  A VK +AYG G + +A  L   G Q 
Sbjct: 1   MHSYTRRTWAEINLDNLAHNYRHITRQLGTTRVIATVKADAYGHGEQHVASTLEKLGAQW 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           F V++++E + LR +  +  I +L        K + +  L   I S       S    S 
Sbjct: 61  FSVSNIDEAMALRRHGIRGDILILGFTPLEDAKELAEHQLTQTIFSHEYARELSSWAQSH 120

Query: 119 GVSHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-- 173
            V+ P  +++DTG  R+G      +  L+   + ++    +++   SHL+ AD       
Sbjct: 121 QVTLPVHIKIDTGMTRIGFLCNGYENDLEGVRSLYSLPGLRITGTFSHLSHADSTDPDAI 180

Query: 174 -VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                Q   F   +S  K +        L +S+G++      + L RPGISLYG      
Sbjct: 181 AFTQAQARHFDEAVSALKQLGCDPGLTHLQNSAGVICLSGGKYDLARPGISLYGLNPSAE 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++ V+  ++ I ++++   G  V YG     +  + IA   +GYADGY   LS  
Sbjct: 241 VTDKELRPVLQLKSVISMVKQVGNGIPVGYGRSYVTSAPTRIATVPVGYADGYSRLLSN- 299

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                      G   + G   PI+G + MD  M D+T       GD + + G D    + 
Sbjct: 300 ----------KGSVLVGGKRAPIIGNVCMDQMMIDVTGI-DAAPGDEVTLIGTDGNLSVS 348

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
            DD+A   GT +Y+++  I  R  + Y
Sbjct: 349 ADDLADLIGTISYEIVCMISKRVPRVY 375


>gi|56751905|ref|YP_172606.1| alanine racemase [Synechococcus elongatus PCC 6301]
 gi|56686864|dbj|BAD80086.1| alanine racemase [Synechococcus elongatus PCC 6301]
          Length = 406

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 172/380 (45%), Gaps = 25/380 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           S +   +++D  A+  N   +   L+ +    AVVK +AYG G   IA  +  AG     
Sbjct: 23  SYQRAWVEVDQGAIAANTRQIRQFLAPSCELMAVVKADAYGHGAVAIASTVLGAGATALG 82

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119
           V ++ EGV+LR     A I +L  IH P + + I    + P +S+  Q    ++ +   G
Sbjct: 83  VATIPEGVRLREAGITAPILLLGSIHSPDEVQAIAHWQIQPSLSTPKQALICAEALDRLG 142

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            S P  L++DTG +RLG   Q A++F          QL+ + SH A AD P       Q 
Sbjct: 143 QSLPVHLKLDTGMSRLGAPWQTAVEFLQLVHGLPSLQLASLYSHFATADSPDRAPLQQQH 202

Query: 180 ERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--M 232
             F   I+          +  +A+S+  LL  + H+   R G++LYG     +      +
Sbjct: 203 AAFEQAIAQIQAEGLPVPKLHIANSAATLLDSSLHYDQVRVGLALYGLYPAPHLGDRLSL 262

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++ +AR+  +    AG+ VSYG +    R++ IAV  IGYADG P  LS        
Sbjct: 263 YPALSVKARVTHVTTLPAGQGVSYGHRYVTQRETPIAVVGIGYADGVPRALSNQM----- 317

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                 +   +G  +P +G ITMD  M DI+    +  GD + + G      I  DD A 
Sbjct: 318 ------EVLYRGQRLPQIGAITMDQMMIDISAMPQLAPGDVVTLLGRSGSEQITADDWAD 371

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
            + T ++++L     R  +F
Sbjct: 372 RANTISWEILCGFKDRLPRF 391


>gi|332163185|ref|YP_004299762.1| alanine racemase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318603930|emb|CBY25428.1| alanine racemase, biosynthetic [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667415|gb|ADZ44059.1| alanine racemase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861935|emb|CBX72104.1| alanine racemase [Yersinia enterocolitica W22703]
          Length = 359

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/366 (28%), Positives = 177/366 (48%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRIAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  I   N +   + S+ QL    ++          ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFAAEDLPILAANCIETAVHSIEQLEAL-EVAELSAPIHVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       K + Q   I+SH + AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSACKNVIQPVNIMSHFSRADEPQVDTTRQQLDCFDTFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
           +   G + S+A+S GILL P  H    RPGI LYG +           ++  +  ++ +I
Sbjct: 183 ADKPGKQ-SIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFELKPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGEPVGYGGTWVSERDTRLGVVAIGYGDGYPRSA-----------PSGTPMWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              V I+G+++MDM   D+  + + +VGD + ++G ++ ++ +A  +G + Y+L+ ++ +
Sbjct: 291 DREVGIVGRVSMDMISVDLGPNATDKVGDEVLLWGAELPVEKIAACTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|238752148|ref|ZP_04613630.1| Alanine racemase 1 [Yersinia rohdei ATCC 43380]
 gi|238709621|gb|EEQ01857.1| Alanine racemase 1 [Yersinia rohdei ATCC 43380]
          Length = 359

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 173/366 (47%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++    +   + S+ QL                ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFAAEDLPVLVANRIETAVHSIEQLEALEAA-ELSAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       K + Q   I+SH + AD+P       QL+ F +  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSDCKNVIQPVNIMSHFSRADEPLIETTRQQLDCFDSFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
           +   G + S+A+S GILL P  H    RPGI LYG +           +   +  ++ +I
Sbjct: 183 TGKPGKQ-SIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFNLLPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +              G    I 
Sbjct: 242 AVREHKAGESVGYGGTWVSERDTRLGVVAIGYGDGYPRSA-----------PSGTPMLIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+    + +VGD + ++G ++ ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GREVGIVGRVSMDMISVDLGPDATDKVGDEVLLWGAELPVETIAARTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|322382485|ref|ZP_08056373.1| alanine racemase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153547|gb|EFX45943.1| alanine racemase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 395

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 92/384 (23%), Positives = 158/384 (41%), Gaps = 29/384 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               +++ L AL  N  +      ++ R  AVVK +AYG G   IA     +G     V 
Sbjct: 6   RPTWVEVSLDALSGNLQAFRQALPDSIRIMAVVKADAYGHGAASIAREAIASGADHLAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYS-KLMSCG 119
            ++E ++LR     A I VL    P   ++    N+   + +      +     +  +  
Sbjct: 66  FLDEALQLREAGISAPILVLGYTAPDGLEMALKNNITLTVFNEEMLRGMELLQGQAEALD 125

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 ++VD+G +R+GL   +EA+ +           L  + +H ACAD+       +Q
Sbjct: 126 KRLRVHVKVDSGMHRIGLYKEEEAVSYLKQIARMPHICLEGLFTHYACADEADKAYTRLQ 185

Query: 179 LERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM- 232
            E+F  ++   K +          +S+  +  P   + + R GI++YG        H + 
Sbjct: 186 YEKFSRVVHEVKRLGIDIPYIHAGNSAAAIDTPELVYNMARLGIAMYGLYPSEKVDHTII 245

Query: 233 --QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             + V++ + R+I  +    G  +SYG       +  I    IGYADG+   LS      
Sbjct: 246 KLEPVMSLKTRMIHDKWLSEGSGISYGTIYHTKGEERIGTLPIGYADGFSRMLS------ 299

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                      I+G  VPI+G+I MD  M +IT     E GD + + G      I  +++
Sbjct: 300 -----TKANALIRGKRVPIVGRICMDQCMLNITGVPEAEAGDEVVLIGRQGDEVIPAEEI 354

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A   GT NY++   +  R  + Y 
Sbjct: 355 AGHLGTINYEVTCMMAHRIPRVYV 378


>gi|49258690|pdb|1RCQ|A Chain A, The 1.45 A Crystal Structure Of Alanine Racemase From A
           Pathogenic Bacterium, Pseudomonas Aeruginosa, Contains
           Both Internal And External Aldimine Forms
          Length = 357

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 168/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EEG++LR    +  I +L G     E ++I   +   V+    QL    +  S      
Sbjct: 60  IEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERA-SLARPLN 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L +D+G +R+G   ++                 +++SH + AD+        QL  F 
Sbjct: 119 VWLXMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFS 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                 +G E SL +S  +L  P       RPGI LYG T        +  ++ V+T E+
Sbjct: 179 AASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R   AGE V YG +    R   I V A+GYADGYP   +            G   
Sbjct: 238 KVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAA-----------DGTLV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL  
Sbjct: 287 FIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-KRVPRVYS 355


>gi|152979091|ref|YP_001344720.1| alanine racemase [Actinobacillus succinogenes 130Z]
 gi|171704339|sp|A6VP88|ALR_ACTSZ RecName: Full=Alanine racemase
 gi|150840814|gb|ABR74785.1| alanine racemase [Actinobacillus succinogenes 130Z]
          Length = 358

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 179/365 (49%), Gaps = 18/365 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    KI   ALK+N   ++  + +++  A+VK NAYG G E +A  +    V  F V  
Sbjct: 2   KPATAKISSLALKHNLELIHQKAPDSKMIAIVKANAYGHGVEFVASTVEEQ-VDGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR       I +L G    ++  +I   N+  V+ +  QL    +         
Sbjct: 61  IEEALTLRSKGIIKPILLLEGFFSAKDLPVIAVNNIQTVVHNREQLEALKQ-TKLPNPIK 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERF 182
             L++DTG +RLG++L E  D+          + L   +SH + AD+  S    +QL RF
Sbjct: 120 VWLKIDTGMHRLGVALDEVEDYVEELKKCANVEPLIGYVSHFSRADELDSDYTRIQLNRF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240
                  KG    +A+S GIL  P+ H +  RPGI +YG +     +    +  V+T  +
Sbjct: 180 LQATED-KGGPRCIAASGGILFWPDSHLEWIRPGIIMYGVSPTDTPSSEFGLIPVMTLTS 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R+  AGE V YGG     +D+ I V AIGY DGYP  +             G   
Sbjct: 239 SLIAVRRHKAGEPVGYGGTWISKKDTKIGVIAIGYGDGYPRNI-----------PSGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           +I G +VPI+G+++MDM   D+ +  + +VGD + ++G ++ ++ VA   G  +Y+L+ +
Sbjct: 288 YINGRIVPIVGRVSMDMITVDLGEDCTDKVGDEVILWGKELPIETVAKHMGILSYELMTK 347

Query: 361 IGTRY 365
           +  R 
Sbjct: 348 LTPRV 352


>gi|299133691|ref|ZP_07026885.1| alanine racemase [Afipia sp. 1NLS2]
 gi|298591527|gb|EFI51728.1| alanine racemase [Afipia sp. 1NLS2]
          Length = 396

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/364 (36%), Positives = 194/364 (53%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW ++ + +  A  +AVVK +AYG G   +   L + G + FFV +++E 
Sbjct: 23  LTIDLDALATNWKALESRAVPAECSAVVKADAYGCGLTPVTRKLVSIGCKTFFVATLDEA 82

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
            + R   P+A I+VL G            +  PVI  + +L  +       G +   ALQ
Sbjct: 83  KRAREAAPKAAIYVLDGFFANCGDDFAKIDCRPVIGDLNELAEWDAFRRTRGWTGLAALQ 142

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG +  EA            G ++L++SHLACA+D S+ +N+ QL  FR++ S
Sbjct: 143 IDTGMNRLGFTPDEARGLVPRIKQADHG-IALVMSHLACAEDMSNAMNARQLAAFRSVAS 201

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + GI ASLA+SSGI LG ++H  + RPG +LYG        +PMQ VV  + RI  IR 
Sbjct: 202 EFSGITASLANSSGIFLGSHFHMDMVRPGAALYGVNPTPEADNPMQPVVGLKVRIAQIRN 261

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R + +A+ + GYADGY    SG++   S       +  + G   
Sbjct: 262 VPKGETVGYGALWHAKRPTRLAIVSAGYADGYFRAASGIEGTRS------AQAIVAGQRC 315

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI+G+I+MD+   DITD     I  G +I + G  + LD++    GT  Y++L  +G RY
Sbjct: 316 PIVGRISMDLMAIDITDVPHGGIRRGHFITLIGEGLTLDELGHHFGTIGYEVLTSLGRRY 375

Query: 366 AKFY 369
           A+ Y
Sbjct: 376 ARDY 379


>gi|154502763|ref|ZP_02039823.1| hypothetical protein RUMGNA_00577 [Ruminococcus gnavus ATCC 29149]
 gi|153796646|gb|EDN79066.1| hypothetical protein RUMGNA_00577 [Ruminococcus gnavus ATCC 29149]
          Length = 383

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 164/385 (42%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M  +  +  +IDL A+  N   M    G  A+  AVVK + YG G   IA  L +   V 
Sbjct: 2   MEKHSRVYAEIDLDAISYNMEQMKKRVGEGAKFIAVVKTDGYGHGAVPIACMLDDDPDVW 61

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            +   ++EE V+L     Q    VL  + P Q + +    +   + ++      S L   
Sbjct: 62  GYATATLEEAVELHRAGIQKPTMVLGCVFPDQYEEMIKEEVRATVYTLDMAHEISNLARK 121

Query: 119 -GVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +  + +++DTG  RLG    +E+ D            L  + +H A AD+     + 
Sbjct: 122 LGKTAYFHIKIDTGMERLGFPATEESADLIGQIEKLPNVCLEGMFTHFAKADELDKTFSE 181

Query: 177 VQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            Q  +F  + +  +    S++     +S+GI+  P +   L R GI+LYG         +
Sbjct: 182 EQYRKFVWMRNEVEKRGISISQYHCDNSAGIIDFPQWKQNLVRAGIALYGLYPSEEVKKE 241

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++  +   + +  +++   G  +SYGG     +   +A   +GY DGY   LS    
Sbjct: 242 TVDLKPALRLVSHVSFVKEVEPGASISYGGTFTADKKMKVATIPVGYGDGYARGLSNR-- 299

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G+  I+G    ILG++ MD  M D+TD       D + + G D    I ++
Sbjct: 300 ---------GEVLIRGKRARILGRVCMDQFMVDVTDIPDTVFMDEVVLIGRDGDDEITVE 350

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +++   G  NY+ +  +G R  + Y
Sbjct: 351 ELSEICGRFNYEFVCCLGKRIPRVY 375


>gi|81301010|ref|YP_401218.1| alanine racemase [Synechococcus elongatus PCC 7942]
 gi|81169891|gb|ABB58231.1| alanine racemase [Synechococcus elongatus PCC 7942]
          Length = 406

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 173/380 (45%), Gaps = 25/380 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           S +   +++D  A+  N   +   L+ +    AVVK +AYG G   IA  +  AG     
Sbjct: 23  SYQRAWVEVDQGAIAANTRQIRQFLAPSCELMAVVKADAYGHGAVAIASTVLGAGATALG 82

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119
           V ++ EGV+LR     A I +L  IH P + + I    + P +S+  Q    ++++   G
Sbjct: 83  VATIPEGVRLREAGITAPILLLGSIHSPDEVQAIAHWQIQPSLSTPKQALICAEVLDRLG 142

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            S P  L++DTG +RLG   Q A++F          QL+ + SH A AD P       Q 
Sbjct: 143 QSLPVHLKLDTGMSRLGAPWQTAVEFLQLVHGLPSLQLASLYSHFATADSPDRAPLQQQH 202

Query: 180 ERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--M 232
             F   I+          +  +A+S+  LL  + H+   R G++LYG     +      +
Sbjct: 203 AAFEQAIAQIQAEGLPVPKLHIANSAATLLDSSLHYDQVRVGLALYGLYPAPHLGDRLSL 262

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++ +AR+  +    AG+ VSYG +    R++ IAV  IGYADG P  LS        
Sbjct: 263 YPALSVKARVTHVTTLPAGQGVSYGHRYVTQRETPIAVVGIGYADGVPRALSNQM----- 317

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                 +   +G  +P +G ITMD  M DI+    +  GD + + G      I  DD A 
Sbjct: 318 ------EVLYRGQRLPQIGAITMDQMMIDISAMPQLAPGDVVTLLGRSGSEQITADDWAD 371

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
            + T ++++L     R  +F
Sbjct: 372 RANTISWEILCGFKDRLPRF 391


>gi|146305288|ref|YP_001185753.1| alanine racemase [Pseudomonas mendocina ymp]
 gi|145573489|gb|ABP83021.1| alanine racemase [Pseudomonas mendocina ymp]
          Length = 362

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 110/374 (29%), Positives = 168/374 (44%), Gaps = 25/374 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     LSG AR  AVVK +AYG G  + A AL +     F V  
Sbjct: 2   RPARALIDLDALRHNYQLARELSG-ARALAVVKADAYGHGAVRCAQALQSE-ADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +A I +L G     E  + D   L  V+ +  Q+    +         
Sbjct: 60  IEEALALREAGIRAPILLLEGFFEADELALIDQHELWCVVHAQWQIEAIEQAR-LSRPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+GL   E  +              +++SH A AD+P       QL  F+
Sbjct: 119 LWLKLDSGMHRVGLHPAEYQEAYRRLLASGKVGKIVLMSHFARADEPECERTVEQLAVFQ 178

Query: 184 TLISHYKGIEASLASSSGILLGPNY-----HFQLTRPGISLYGGTDKINK---SHPMQTV 235
                    E SL +S  +L  P            RPGI LYG T        +  +Q V
Sbjct: 179 QARQGLAA-EVSLCNSPAVLGWPQLFEKTGASDWVRPGIMLYGATPFEQAQEQAARLQPV 237

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+++I +R+  AGE V YG +    R + + V AIGYADGYP               
Sbjct: 238 MTLESKVISVRELPAGEPVGYGARFVSERPTRVGVVAIGYADGYPRHA-----------P 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G +  ++G+++MDM   D+TD     +G  ++++G  +   DVA+A+G+  Y
Sbjct: 287 TGTPVAVDGQLTRLIGRVSMDMLTVDLTDLPQAGLGSRVELWGKQVLASDVAMAAGSIPY 346

Query: 356 DLLVRIGTRYAKFY 369
            +   +  R    Y
Sbjct: 347 QIFCNL-RRAPLLY 359


>gi|113475275|ref|YP_721336.1| alanine racemase [Trichodesmium erythraeum IMS101]
 gi|110166323|gb|ABG50863.1| alanine racemase [Trichodesmium erythraeum IMS101]
          Length = 395

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/381 (28%), Positives = 177/381 (46%), Gaps = 28/381 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   ++I+  AL  N   + +L S   +   VVK +AYG G  KI+  +  AGV    V 
Sbjct: 24  QRAWVEINDRALSYNVQQLKSLLSAKTQLMGVVKADAYGHGASKISKTILEAGVDRLAVA 83

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-S 121
           ++ EG++LRL   +  I +L  I  P Q + I    L P I +  Q   +S+ +S     
Sbjct: 84  TLPEGIELRLAGIKPPILILGAIDRPEQIRAIAHWQLEPTICTPQQALVFSETLSYQTEP 143

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L++DTG +RLG   Q+A++F          +++ I SHLA AD+    V   Q +R
Sbjct: 144 MLVHLKLDTGMSRLGTPWQQAVEFVKFVQGLPNLKIASIYSHLATADNLDQTVMKQQHQR 203

Query: 182 FRTLI--------SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
           F   I        S    I+  LA+S+  L  P  H+ + R G+++YG      +     
Sbjct: 204 FEEAIGLCGIGGKSFSSDIQLHLANSAATLTDPALHYDMVRVGLAIYGLYPAPHLQDKIN 263

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  +AR+  ++   AG  VSYG Q    +   +AV  IGYADG P  LS       
Sbjct: 264 LKPVMQVKARVTQVKTIEAGTGVSYGYQFIAPKQMRLAVVGIGYADGLPRNLSNRM---- 319

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                  K  ++  ++P +G ITMD  M D++    +E G+ + + G      I  ++ A
Sbjct: 320 -------KVIVRDRLIPQVGAITMDQLMLDVSAIPDLETGEVVTLLGQVGKHQISAENWA 372

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
              GT ++++L     R  + 
Sbjct: 373 NTLGTISWEILCGFKNRLPRV 393


>gi|238798495|ref|ZP_04641974.1| Alanine racemase 1 [Yersinia mollaretii ATCC 43969]
 gi|238717657|gb|EEQ09494.1| Alanine racemase 1 [Yersinia mollaretii ATCC 43969]
          Length = 359

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 171/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +R  AVVK NAYG G  +IA  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLEIAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  I+    +   I S+ QL                ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFSAEDLPILAANRIETAIHSIEQLEALEAA-DLPAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A  F         + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGIRPEHAEAFYQRLSTCPNVIQPVNIMSHFSRADEPQVETTRQQLACFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +   G + S+A+S GILL P  H    RPGI LYG +           +   +  ++ +I
Sbjct: 183 TGKPGKQ-SIAASGGILLWPEAHRDWVRPGIILYGVSPLDEPYASHFDLLPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGEPVGYGGTWVSERDTRLGVVAIGYGDGYPRSA-----------PSGTPMWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+    S +VGD + ++G ++ ++ VA  +G + Y+L+ ++ +
Sbjct: 291 GREVGIVGRVSMDMISVDLGPDASDKVGDEVLLWGAELPVERVAACTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|323144440|ref|ZP_08079044.1| alanine racemase [Succinatimonas hippei YIT 12066]
 gi|322415779|gb|EFY06509.1| alanine racemase [Succinatimonas hippei YIT 12066]
          Length = 359

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 167/366 (45%), Gaps = 21/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I+  ALKNN   +      ++  AVVK NAYG G  ++A ALY   V  F V  ++E 
Sbjct: 6   AEINTQALKNNIDIIKTYVPGSKIVAVVKANAYGHGLYQVASALYEK-VDAFAVARLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR    +  I +L G    ++   I  + +   +  + QL    +           L+
Sbjct: 65  LNLREQGIKKPIILLEGFFNEEDLPFIARSEIYTAVHDMEQLEAIERA-KVEKPLHCWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185
           +D G +RLG   Q+ L+          + +   +ISHL+ AD P  +  N  Q+  FR  
Sbjct: 124 IDIGMHRLGADPQDVLNMKERLEKCPNVLKPIGLISHLSVADTPTETDYNIAQINYFRET 183

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242
             H+ G +  L++S+GIL  P+ H    RPGI +YG +   +K      ++ V+T ++ I
Sbjct: 184 AKHFSG-DLCLSNSAGILAWPDSHTPWVRPGIIMYGISPFEDKVGSDFGLKPVMTLKSSI 242

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I IRK   G  V YG       D+ I + A GY DGYP                G    I
Sbjct: 243 IAIRKVKKGAKVGYGAAWTAPYDTTIGIVATGYGDGYPRVAPN-----------GTPVLI 291

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VP  G + MDM   D+  +   +VGD   ++G  + ++ +A   GT  Y+L+ R+ 
Sbjct: 292 NGKYVPTAGHVCMDMMFVDLGLNSQDKVGDEAILWGKGLPVEKIAKLCGTIPYELVCRVM 351

Query: 363 TRYAKF 368
            R  + 
Sbjct: 352 PRV-RV 356


>gi|253689861|ref|YP_003019051.1| alanine racemase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259710071|sp|C6DE79|ALR_PECCP RecName: Full=Alanine racemase
 gi|251756439|gb|ACT14515.1| alanine racemase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 360

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/375 (27%), Positives = 171/375 (45%), Gaps = 23/375 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +       I+  AL++N   +  L+ +++  A+VK NAYG G  + A    +     +
Sbjct: 1   MKT---ATAVINRRALRHNLQRIRQLAPDSQVVAIVKANAYGHGMIEAAHTFCD--ADCY 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  + E + LR       I +L G     +  ++ +  L   + S  QL    +  +  
Sbjct: 56  GVARLSEALALRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHSPEQLAALEQA-TLS 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 +++DTG +RLG+  + A  F       + + Q   I+SH + AD+P +     Q
Sbjct: 115 QPLRVWMKLDTGMHRLGVLPEHADAFWQRLTACRNVVQPVNIMSHFSRADEPEAGTTERQ 174

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235
           L  F        G + S+A+S GILL P  H    RPGI LYG +   N+       Q  
Sbjct: 175 LTCFDAFTQGKPGAQ-SIAASGGILLWPQSHRDRVRPGIILYGVSPLDNEDAAHFGFQPA 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + +I +R+   GE V YGG     R++ + V A+GY DGYP               
Sbjct: 234 MTFTSHLIAVREHHTGEAVGYGGTWTSPRNTRLGVVAVGYGDGYPRCA-----------P 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    I G  VP+ G+++MDM   D+      +VGD + ++GP + ++ +A  +G + Y
Sbjct: 283 AGTPVLINGREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGPTLPVERIAAHTGASAY 342

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ R+  R A  Y 
Sbjct: 343 ELITRLTQRTALEYV 357


>gi|167013239|pdb|2ODO|A Chain A, Crystal Structure Of Pseudomonas Fluorescens Alanine
           Racemase
 gi|167013240|pdb|2ODO|B Chain B, Crystal Structure Of Pseudomonas Fluorescens Alanine
           Racemase
 gi|167013241|pdb|2ODO|C Chain C, Crystal Structure Of Pseudomonas Fluorescens Alanine
           Racemase
 gi|167013242|pdb|2ODO|D Chain D, Crystal Structure Of Pseudomonas Fluorescens Alanine
           Racemase
          Length = 357

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 168/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     ++G A+  AV+  +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYQLAREVTG-AKALAVIXADAYGHGAVRCAQAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E  +I + +   V+ S+ QL    +         
Sbjct: 60  IEEALELRAAGIRAPILLLEGFFEADELPLIVEHDFWCVVHSLWQLDAIEQAR-LAKPIH 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L +D+G +R+GL   +                 +++SH A AD+     +  Q+  F 
Sbjct: 119 VWLXLDSGMHRVGLHPNDYKAAYQRLQASANVAKIVLMSHFARADELDCTRSVEQVAVFL 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
              +     E SL +S  +L  P       RPG+ LYG +        +  +Q V+T E+
Sbjct: 179 GARADLTA-EISLRNSPAVLGWPRVPSDWVRPGLMLYGSSPFDEPQATASRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG +    +   I V A+GYADGYP                G   
Sbjct: 238 KVICVRELPAGEPVGYGARFITPKPMRIGVVAMGYADGYPRQA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           F+ G    +LG+++MDM   D+TD     +G  ++++G +I   +VA A+ T  Y +   
Sbjct: 287 FVDGVRSQLLGRVSMDMLCIDLTDVPQAGLGSTVELWGKNILASEVATAADTIPYQIFCN 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-KRVPRLYS 355


>gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl]
 gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl]
          Length = 816

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/375 (26%), Positives = 159/375 (42%), Gaps = 25/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               + +DLTA+ +N  ++   +G      V+K + YG G  ++A A   AG +   V +
Sbjct: 451 RPTWVHLDLTAIADNVRALRNHAG-VPLMVVLKGDGYGHGAARVARAALQAGAEMLAVAT 509

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHP 123
           + EG  LR     A I VL    P Q       +L+  +         ++  + CG    
Sbjct: 510 LGEGRALRAQGIAAPILVLGYTPPWQAAEAIRLDLMLTLFDDDTAQALHAAALECGRPAR 569

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VDTG  RLGLS  E   F          +   + +H A AD+        QL RF+
Sbjct: 570 VHVKVDTGMARLGLSPAEVAPFLSRLRELPGIEPVALYTHFARADEADPTPTEQQLARFQ 629

Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVV 236
            ++     +  +      A+S+  L  P  HF + RPG++ YG            M+  +
Sbjct: 630 AVLADLTAAGLRPPCVHAANSAATLRFPATHFDMVRPGLACYGLAPGAAAPLLPGMRPAL 689

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +    +  ++   AG  +SYGG     R S IA   +GYADG   +              
Sbjct: 690 SFYTEVAQVKDHPAGTPISYGGTFVTARPSRIATIPVGYADGLRRS------------PP 737

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             +  I+G   PI+G+I MD  M D+TD   +  GD + I G      I +D++A   GT
Sbjct: 738 WREVLIRGQRAPIVGRICMDYAMVDVTDIPGVRRGDAVTIIGRQGDAVIGVDEIAGWLGT 797

Query: 353 TNYDLLVRIGTRYAK 367
            +Y++L  I  R  +
Sbjct: 798 ISYEVLTGILPRVPR 812


>gi|325263860|ref|ZP_08130593.1| alanine racemase [Clostridium sp. D5]
 gi|324030898|gb|EGB92180.1| alanine racemase [Clostridium sp. D5]
          Length = 387

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 155/385 (40%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M     +  ++DL A+  N   M    G  A+  AV+K + YG G   IA        + 
Sbjct: 1   MKQFNRVYARVDLDAIAYNMEQMKQRIGEGAQIIAVIKMDGYGHGAVPIAEMFEENNYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            +   S+EE + LR    +  I VL  I P Q + +   ++   +         SK  + 
Sbjct: 61  GYATASLEEAIALRKEGIKKPILVLGCIFPEQYEEMILNDIRATVYMKETAEGISKAAAA 120

Query: 119 -GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G      ++VDTG  RLG     +++       +    +L  + +H A AD+       
Sbjct: 121 LGRKVRIHIKVDTGMGRLGFLPDTDSVKAIREISSLPNIELEGMFTHFAKADETDKSYTY 180

Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            Q E+F  +    +   A        +S+GI+  P+    L R GIS YG         K
Sbjct: 181 KQHEKFVWMKDALEAEGADITYYHCDNSAGIIDFPDMKHNLVRAGISTYGMYPSDEVSQK 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++  +   + +  +++  AG  +SYGG     +   +A   +GY DGY   LS    
Sbjct: 241 AVDLKPALELISHVTFVKEVEAGTSISYGGTFTAPKRMKVATIPVGYGDGYSRGLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344
                        I+G    ILG++ MD  M D+TD   +   D   + G      I ++
Sbjct: 298 --------KADVLIRGRRARILGRVCMDQFMVDVTDIPDVRFMDQAVLIGFDGEEHIPVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +++   G  NY+ +  +G R  + Y
Sbjct: 350 ELSGLCGRFNYEFVCCLGKRIPRVY 374


>gi|291522358|emb|CBK80651.1| alanine racemase [Coprococcus catus GD/7]
          Length = 392

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/389 (26%), Positives = 175/389 (44%), Gaps = 31/389 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +      +I+L ALK+N   + A+ G+ +   V+K NAYG G   +A  L   G   F
Sbjct: 1   MKNTYRACAEINLDALKHNIQEIQAVLGDTKLMCVIKTNAYGHGSIVLARELAAMGAYGF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V +V+EG++LR       I VL  +   Q   +   +++P I +      +  + +   
Sbjct: 61  AVATVDEGIELRNNGIIQPILVLGFVAKEQYADMITHHIMPAIFTYSMAKDFDAVANAMH 120

Query: 121 S-HPYALQVDTGFNRLGL-SLQEALDFTHNSF-----NKKLGQLSLIISHLACADDPSSH 173
           +     +++DTG +R+G  S  E+++ T           K  ++  I +H ACAD    H
Sbjct: 121 TVADVHIKLDTGMSRIGFKSDAESIEATVQGIVMINSLLKNIRIDGIFTHFACADCEDDH 180

Query: 174 VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
           +   QL+RF  +I   +  G+       A+S+ I+  P     + R GI +YG       
Sbjct: 181 MTFKQLKRFDNVIDRLEKNGVHIPIKHCANSAAIIKYPGMRMNMARAGIIIYGLYPSDEV 240

Query: 229 SHPM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
              +   + V+  ++ +I ++    G  V YG      R + IA  +IGY DGYP  LS 
Sbjct: 241 DREVIKLEPVMRLKSHVIYVKTVEPGTTVGYGATYVCQRPTKIATVSIGYGDGYPRALSN 300

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD---- 340
                       G+  I     PI+G+I MD  M D+TD    I+ GD + + G      
Sbjct: 301 -----------KGRVLIGSQSWPIIGRICMDQLMVDVTDADYEIKQGDEVVLVGSQGSES 349

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I +++VA  + + NY+ +  I  R  + Y
Sbjct: 350 IPVEEVAAINNSFNYEFVCDINRRVPRVY 378


>gi|37528186|ref|NP_931531.1| alanine racemase [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36787623|emb|CAE16730.1| alanine racemase, biosynthetic [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 359

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 106/366 (28%), Positives = 172/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +   AVVK NAYG G  + A  L +     F V  + E 
Sbjct: 6   AVIDRRALRHNLQRVREIAPKSNLIAVVKANAYGHGLLETAHTLDD--ADCFGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     + + +   ++  V+ SV QL    +           ++
Sbjct: 64  LTLRHGGIVKPILLLEGCFDAADLLVLVANHIETVVHSVEQLQALEQA-KLSHPVKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +RLG+  ++A +F       K + Q   I+SH   AD+P+      Q+  F+   
Sbjct: 123 LDSGMHRLGVRPEDAEEFYQRLSRCKNVQQPVNIVSHFGRADEPTVDTTCQQIACFQAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +   G E S+ +S GILL P  H    RPG+ +YG +    K      +   +T ++ +I
Sbjct: 183 ADKPG-EKSIDASGGILLWPEVHQDWVRPGLMMYGVSPLSDKTAVDFNLIPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK  AGE V YGG     RD+ + V AIGY DGYP +              G    I 
Sbjct: 242 AVRKHKAGESVGYGGIWVSERDTYLGVVAIGYGDGYPRSA-----------PSGTPIHIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI G+++MDM   D+    + +VGD + ++G  + ++ VA  +G   Y+L+ ++ +
Sbjct: 291 GREVPIAGRVSMDMISVDLGPEATDKVGDEVVLWGDVLPVERVAKHTGIITYELVTKLTS 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RVVMEY 356


>gi|91200113|emb|CAJ73156.1| similar to alanine racemase [Candidatus Kuenenia stuttgartiensis]
          Length = 374

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/382 (28%), Positives = 175/382 (45%), Gaps = 26/382 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           MH       +IDL+AL++N   +    G N +   VVK NAYG G  +I   L   GV+ 
Sbjct: 1   MH--RPTWAEIDLSALRHNLQEIRRRIGANIKILGVVKANAYGHGDYEIGALLVKNGVEM 58

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118
             +  +EEGV LR     + + +  G    Q   I   NL P +  +      +      
Sbjct: 59  LGIAILEEGVHLREKGITSPLLLFGGFFEEQIDAIIHYNLTPTVYDLTLAEKLAHHAHSA 118

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G +    + +DTG    G+    A +   +        +  I +H + ADD  S     Q
Sbjct: 119 GKTVNVHVYIDTGMGGTGVRHDVAFECIKHLTGMNGLVIEGIYTHCSSADDNDSTNTERQ 178

Query: 179 LERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
           +  F+ +I+     GI      +A++  IL   + +F + RPG+SLYG   +DK +++  
Sbjct: 179 IRNFKDIIAKLDTAGIIIPLKHMANTGSILRYNDSYFTMARPGLSLYGLHVSDKESRNLS 238

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++ + RII I+    GE + YGG  K+TR + +A   +GY DGY   LS       
Sbjct: 239 VKPVMSLKTRIIHIKTMEPGETLGYGGSYKITRTTRVATLPLGYDDGYNRLLSNQ----- 293

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 G+  ++G  VP++G+I MD    D+T   ++ VGD + I+G      I ++ VA
Sbjct: 294 ------GRVIVRGNKVPVIGRICMDQCFIDVTTIKNVSVGDEVVIYGRQGKETISIESVA 347

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T  Y++   +  R  + Y
Sbjct: 348 EQRKTIPYEITCNVSYRVPRIY 369


>gi|315182757|gb|ADT89670.1| alanine racemase [Vibrio furnissii NCTC 11218]
          Length = 387

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/368 (30%), Positives = 183/368 (49%), Gaps = 20/368 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +  IDL AL++N+  + ALSG+ +  AV+K +AYG G  ++A AL +     F V+ +E
Sbjct: 4   AQAHIDLNALQHNYRRLKALSGSQQVVAVIKGDAYGHGAVQLASALPD--ADRFAVSRLE 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  +LRL      I +L G     + K   +  L   I    QL    +  +        
Sbjct: 62  EAEELRLAGITQPILLLEGCFCADDLKRAAELKLDTTIHCEEQLHDL-ETSTLAHPIHVW 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VDTG +RLG+   +  ++       +KL +    ISH +CADD +      QL  F  
Sbjct: 121 LKVDTGMHRLGVQPFQVPEYVSRIERTRKLSEKLGFISHFSCADDINHPTTQRQLACFNQ 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEAR 241
             + Y G   ++A+S+GIL  P   F + R GI+L+G +       + H +  V+T   R
Sbjct: 181 ATAQYDG-PKTIANSAGILFWPESQFDVARAGIALFGISPSAEHTGRDHALVPVMTLNTR 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +RK  A   V YG      +D+ I V A+GY DGYP +              G   F
Sbjct: 240 LIAVRKHQASRPVGYGETWHAQQDTHIGVIAMGYGDGYPRSA-----------PSGTPVF 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VPI+G+++MDM   D+    + +VGD ++++G ++ ++ +A   GT  Y+L +++
Sbjct: 289 VNGRLVPIVGRVSMDMITVDLGPDATDQVGDVVEMWGKNLPIETIANHVGTIPYELTIKL 348

Query: 362 GTRYAKFY 369
             R  + Y
Sbjct: 349 TPRVHRHY 356


>gi|307297643|ref|ZP_07577449.1| alanine racemase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916903|gb|EFN47285.1| alanine racemase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 369

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/380 (27%), Positives = 171/380 (45%), Gaps = 27/380 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+S +   L IDL+A + N   ++  +  A+   VVK +AYG G  +++     +GV   
Sbjct: 1   MNSRKTFAL-IDLSAYRQNLVYLSGKASPAKLMVVVKADAYGHGAVELSKVAQESGVDRL 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V  +EEG+K+R       I VL  +   +     + +L   +SS  Q      ++    
Sbjct: 60  AVAFLEEGIKIRQSGISLPILVLNYVEKKEIPTAKEFSLTLSLSSFAQ---LENIIGLNK 116

Query: 121 SHP-YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             P + L VDTG  RLGL  +E+++   NS  +K   ++   +H A AD+  S     Q 
Sbjct: 117 QLPDFQLVVDTGMRRLGLEWEESIELY-NSAVRKGINITGAYTHFATADEKGSGFVLEQR 175

Query: 180 ERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           E F   +        +  E  +++S+G +   N  F   R GI+ YG          ++ 
Sbjct: 176 EAFGRFLHGLGQRRNRHFETHISNSAGTIYFDNSDFSYVRAGIATYGLQPSKETDENLKP 235

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + +  +++   G  VSYG      RD L+A   +GYADGY   LS          
Sbjct: 236 VLSWVSCVSFVKRIRTGYSVSYGRTFVADRDMLVATIPVGYADGYNRLLSNR-------- 287

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIF----GPDIKLDDVALA 349
              G   I G    +LG++ MD  + DI+     + +GD + I     G  I  +++A  
Sbjct: 288 ---GYVIISGKRCKVLGRVCMDQFVVDISHIEKPVSIGDEVVIVGTQEGESISAEEIADL 344

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT NY+++  I +R  + Y
Sbjct: 345 CGTINYEVVCSISSRVPRVY 364


>gi|15613083|ref|NP_241386.1| alanine racemase [Bacillus halodurans C-125]
 gi|20137241|sp|Q9KFF9|ALR_BACHD RecName: Full=Alanine racemase
 gi|10173133|dbj|BAB04239.1| alanine racemase [Bacillus halodurans C-125]
          Length = 388

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 155/378 (41%), Gaps = 28/378 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            +++DL A++ N  +   L  +      AVVK N YG G  +++ A   AG     V  +
Sbjct: 9   WVEVDLDAIEQNVTNALRLYKDREMNLMAVVKANGYGHGAVEVSQAALRAGASYLSVAFL 68

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E + LR     A I V+  +     ++     +   +  +  L      +         
Sbjct: 69  DEALALRKAGIDAPILVMGLVGAEHVQLAIKHRITLTVYQLDWLEQAISRLHTRDKLAIH 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG  R+GL  +E +    +   + +  +L  + +H A AD+        Q +RF  
Sbjct: 129 LKLDTGMGRIGLRRKEDIRSCMDFIASHECFELEGVFTHFATADEKDLTYFKKQCQRFNQ 188

Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTV 235
            + + +  +         +S+  L  P  +F + R GI++YG T           P++  
Sbjct: 189 WLEYIREWQLPIRYVHCGNSAAGLRFPEKNFNMFRFGIAMYGLTPSPEITDELPFPLKQA 248

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            + ++R+  ++K   GE +SYG          I    IGYADG+    S           
Sbjct: 249 FSLKSRLSNVKKLPKGEGISYGATYVTEGAEWIGTLPIGYADGWIRHHSN---------- 298

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
            GG   I G   P +G+I MD  M  +    S  +GD + + G      I +D+VA    
Sbjct: 299 AGGHVLIDGKRAPFVGRICMDQCMIRLPKKHS--IGDTVTLIGESDGKQITMDEVAKRLN 356

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + Y
Sbjct: 357 TINYEIPCVISWRVPRIY 374


>gi|160895303|ref|ZP_02076074.1| hypothetical protein CLOL250_02862 [Clostridium sp. L2-50]
 gi|156862996|gb|EDO56427.1| hypothetical protein CLOL250_02862 [Clostridium sp. L2-50]
          Length = 388

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 93/384 (24%), Positives = 172/384 (44%), Gaps = 27/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+    +   I+L  ++ N   M A    + +  AV+K +AYG G  +++ AL +     
Sbjct: 1   MNKYRRIEADINLDNIRENIKMMKACVPESMKMLAVIKADAYGHGAVEVSRALSDL-ADF 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           + +  ++E V+LR    +  + +L    P +   +   ++ P +    +    S   +  
Sbjct: 60  YAIACIDEAVELRHAGCEKPLLILGYTDPSEYDELITYDVRPAMYDKAECAILSDDAVKK 119

Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      +++DTG +R+G    +A ++      +    ++  I +H + AD+      + 
Sbjct: 120 GTKAKIHIKMDTGMSRIGFQCDDAGINDIVEIAHMPGIEVEGIFTHYSKADEYDKTAANG 179

Query: 178 QLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           QL  FR++I     +GI      +++S+GI+   N  F + R GI  YG        H +
Sbjct: 180 QLALFRSVIGRLEERGISIPVKHISNSAGIMEMDNEGFDMVRSGIVTYGLYPSDEVDHSI 239

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  +   A+++ ++   AG  + YG       D  IA  + GYADGYP   S +   
Sbjct: 240 AALKPAMELLAKVVHVKDVKAGTGIGYGWTFVAPHDMRIATVSAGYADGYPRAQSNI--- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345
                   G+  I G   PI G++ MD  M D++D     VGD + + G     +I +++
Sbjct: 297 --------GRVIIHGKYAPITGRVCMDQFMIDVSDIPETAVGDTVVLIGKCGDKEITVEE 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA  + + NY+L+  IG R  + Y
Sbjct: 349 VAEPANSFNYELICNIGRRVPRVY 372


>gi|153871849|ref|ZP_02000914.1| alanine racemase 2, PLP-binding, catabolic [Beggiatoa sp. PS]
 gi|152071686|gb|EDN69087.1| alanine racemase 2, PLP-binding, catabolic [Beggiatoa sp. PS]
          Length = 357

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 177/368 (48%), Gaps = 19/368 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                 ID  AL+ N   +   + N+R  AV+K N YG G  ++A     A V  F V+ 
Sbjct: 3   RPAHAFIDTAALRGNVQRVKVCAPNSRIMAVIKANGYGHGAIRMAQT-IEASVNAFAVSC 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR       I +L G   P +  II D +L  V+ +  Q     K         
Sbjct: 62  LEEALQLREAEITIPIVLLEGFFHPNELPIIADQDLHIVVHTHKQFEDLLKA-PLEKPIT 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VDTG +RLG +  +         + +++ Q   ++SHL+CADD    +   Q + F
Sbjct: 121 IWLKVDTGMHRLGFAPSDIEPIYKLLKHSQQIAQPIRLMSHLSCADDRQDEITEQQTQIF 180

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
             L  H   +EASLA+S+G+L  PN H    RPGI LYG +       K   +Q+V+  +
Sbjct: 181 MALARHL-NLEASLANSAGVLGWPNTHADWVRPGIMLYGVSPFLKSAGKREGLQSVMQLQ 239

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I +++   GE + YG   +  +  L+ V AIGYADGYP                G  
Sbjct: 240 STLISVKRHRKGEAIGYGATWRCPQTMLVGVVAIGYADGYPRHA-----------PSGTP 288

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G  VP++G+++MDM   D+    +  +GD + ++G  + ++++A  +GT  Y+LL 
Sbjct: 289 VLVNGRRVPLVGRVSMDMITVDLRSQPNARIGDPVVLWGRHLPVEEIANDAGTIAYELLC 348

Query: 360 RIGTRYAK 367
            +  R   
Sbjct: 349 HVNHRVKM 356


>gi|82919488|gb|ABB95691.1| D-alanine racemase [Bacillus subtilis]
          Length = 370

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/374 (27%), Positives = 163/374 (43%), Gaps = 27/374 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +IDL+A+K N  +M    G +    AVVK NAYG G  + A A  +AG     V  ++
Sbjct: 1   WAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAGASCLAVAILD 60

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E + LR    +A I VL  + P    I  + ++     SV  L   ++    G S  + L
Sbjct: 61  EAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHTKKG-SLHFHL 119

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +VDTG NRLG+  +E +       ++    +   + +H A AD+       +Q ERF+ L
Sbjct: 120 KVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYFLMQFERFKEL 179

Query: 186 IS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
           I+    K +    A+S+  L      F   R GI +YG     +        ++   T  
Sbjct: 180 IAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADMSDEIPFQLRPAFTLH 239

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    GE VSYG +    +D+ I    +GYADG+   L G D            
Sbjct: 240 STLSHVKLIRKGESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGTDI----------- 288

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             +KG  + I G+I MD  M ++        G  + + G      I +D++A    T NY
Sbjct: 289 -LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDEIAGRLETINY 345

Query: 356 DLLVRIGTRYAKFY 369
           ++   I +R  + +
Sbjct: 346 EVACTISSRVPRMF 359


>gi|121602454|ref|YP_989355.1| alanine racemase [Bartonella bacilliformis KC583]
 gi|120614631|gb|ABM45232.1| alanine racemase [Bartonella bacilliformis KC583]
          Length = 373

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 189/365 (51%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL A+  N+  +      A  +AVVK NAYG+G EKI+ ALY AG + FFV+ ++E 
Sbjct: 19  ATIDLGAIIANYKILAQHIAPAECSAVVKANAYGMGAEKISSALYQAGCRTFFVSQIQEA 78

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++L+   P    + +L G  P  E+ +    LIPV++S   +  +  L        P  +
Sbjct: 79  LQLKTILPSNITLVLLNGFPPTTEEFVAQAGLIPVLNSWHAIESWQMLCQKKHQKFPAII 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E           +   +  I+SHL+  DD +   N  QL   +T +
Sbjct: 139 QIDTHMNRLGLDQEELQQLIKQPTIFEKANIKYIMSHLSNGDDATHASNDTQLTAMKTAL 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     + SLA+S GI L  +++F L RPGI+LYG         P++ V+  E ++I  R
Sbjct: 199 AQLPTCKVSLANSGGIFLNSDFYFDLVRPGIALYGVDPHGKCPTPIKPVLKLETQVIQSR 258

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YGG    +R S +   +IGYADG+  TLS             G  +  G+ 
Sbjct: 259 HVDAGTPVGYGGSFVTSRPSTLTTISIGYADGWLRTLSN-----------KGVVYFNGHK 307

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+I+MD T+ D TD      ++GD++++ GP   ++DVA  + T  Y++L  +G R
Sbjct: 308 LPIIGRISMDSTIVDATDLECEKPKIGDWVELIGPHQTVEDVAADADTIPYEILTSLGPR 367

Query: 365 YAKFY 369
             + Y
Sbjct: 368 CKRIY 372


>gi|302038070|ref|YP_003798392.1| alanine racemase [Candidatus Nitrospira defluvii]
 gi|300606134|emb|CBK42467.1| Alanine racemase [Candidatus Nitrospira defluvii]
          Length = 387

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 167/373 (44%), Gaps = 23/373 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + +DL AL +N   +  L+  +   AVVK NAYG G  ++   L    V  F V +V+EG
Sbjct: 12  VSVDLNALGHNLAHVRRLAPRSEVLAVVKANAYGHGALELTRTLQQLAVHRFGVATVDEG 71

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I V+    P Q   +    L PV+  S     F + +      +   ++
Sbjct: 72  IVLRQAGIHDPILVMGPTVPAQFPDLIAHRLTPVLYRSDMVQAFAAAVPPKAAPYSVHVK 131

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG  RLG+   E  D       +   +L  +++HLA AD+  +     QL  F+  + 
Sbjct: 132 IETGMGRLGVHPPEMPDLAAMPAFRATLRLEGLMTHLADADNTKTTHTETQLTEFQQTLD 191

Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAEA 240
             +           A+S+GI+  P   + L RPGI LYG     N++     + ++T +A
Sbjct: 192 TLRQGGLSCPLIHAANSAGIIQYPASLYTLVRPGIMLYGYHTLSNETPAPELRPILTWKA 251

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I  +    AG+ VSY       R S IAV  +GYADGY   LS             G  
Sbjct: 252 TIAHLHNIQAGDSVSYNRTFIAARRSKIAVLPVGYADGYNRLLSNR-----------GMV 300

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            I G  VP++G++ MDMTM D+TD   + +G    + G      +   D+A    T  Y+
Sbjct: 301 LIGGRRVPVVGRVCMDMTMVDVTDVPGVHIGQEAILIGQQGQERLTAADLAAWQQTIPYE 360

Query: 357 LLVRIGTRYAKFY 369
           +L  IG R  + Y
Sbjct: 361 VLCAIGQRVPRHY 373


>gi|78224104|ref|YP_385851.1| alanine racemase [Geobacter metallireducens GS-15]
 gi|123571083|sp|Q39RJ8|ALR_GEOMG RecName: Full=Alanine racemase
 gi|78195359|gb|ABB33126.1| alanine racemase [Geobacter metallireducens GS-15]
          Length = 379

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 170/386 (44%), Gaps = 29/386 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S   +  +IDL AL++N+  +  A+       A+VK +AYG G   I+  L + GV  
Sbjct: 1   MDSRPTI-AEIDLAALRHNFEQVQRAVPAGCGILAIVKADAYGHGFMDISRELESLGVTA 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           F V  + EG++LR       + +L G++PGQE+     NL   + S+ Q    +      
Sbjct: 60  FGVAFLAEGIQLRKSGIDRPVLILGGVYPGQERKCVGFNLSTAVFSLEQARVLNDTAARL 119

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VN 175
                  +++DTG  RLG++  EA  F       K  +L  IISH A AD+        +
Sbjct: 120 YRKAKIHVKIDTGMGRLGVAAAEAPAFFRELREMKSLELEGIISHFASADELDDDGRRFS 179

Query: 176 SVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INK 228
             Q   F   ++  + +        +A+S+           L RPGI LYG         
Sbjct: 180 DRQAAVFAQSVAEARSLGLDPRYVHIANSAAAFGMDLPFCNLVRPGIVLYGALPSGDFEG 239

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ ++  ++ + +++    G  +SY  +       LIA   +GYADGY   L+    
Sbjct: 240 KMALRPIMRLQSTVAMLKWVEPGTSISYARRYTAPDRRLIASVPVGYADGYSRALTNR-- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKL 343
                    G+  I+G   P++G + MD  M D+T    + VGD + + G D     ++ 
Sbjct: 298 ---------GEVLIRGTRAPVVGTVCMDWIMIDVTSVPGVAVGDEVTLLGCDRQGHCVRA 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +++A  +GT  Y++   I  R  + Y
Sbjct: 349 EELASWAGTIPYEIFCGISKRVPRVY 374


>gi|22124492|ref|NP_667915.1| alanine racemase [Yersinia pestis KIM 10]
 gi|45440330|ref|NP_991869.1| alanine racemase [Yersinia pestis biovar Microtus str. 91001]
 gi|108809954|ref|YP_653870.1| alanine racemase [Yersinia pestis Antiqua]
 gi|108813509|ref|YP_649276.1| alanine racemase [Yersinia pestis Nepal516]
 gi|145600898|ref|YP_001164974.1| alanine racemase [Yersinia pestis Pestoides F]
 gi|150260633|ref|ZP_01917361.1| alanine racemase (biosynthetic) [Yersinia pestis CA88-4125]
 gi|162420301|ref|YP_001605330.1| alanine racemase [Yersinia pestis Angola]
 gi|165926799|ref|ZP_02222631.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936464|ref|ZP_02225032.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010502|ref|ZP_02231400.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213905|ref|ZP_02239940.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402467|ref|ZP_02307924.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419354|ref|ZP_02311107.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426158|ref|ZP_02317911.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167470981|ref|ZP_02335685.1| alanine racemase [Yersinia pestis FV-1]
 gi|218927526|ref|YP_002345401.1| alanine racemase [Yersinia pestis CO92]
 gi|229836578|ref|ZP_04456744.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           Pestoides A]
 gi|229840186|ref|ZP_04460345.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842268|ref|ZP_04462423.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229903994|ref|ZP_04519107.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           Nepal516]
 gi|270489020|ref|ZP_06206094.1| alanine racemase [Yersinia pestis KIM D27]
 gi|294502386|ref|YP_003566448.1| alanine racemase [Yersinia pestis Z176003]
 gi|20137380|sp|Q8ZJ10|ALR1_YERPE RecName: Full=Alanine racemase 1
 gi|226711068|sp|A9QYT2|ALR_YERPG RecName: Full=Alanine racemase
 gi|21957285|gb|AAM84166.1|AE013660_1 alanine racemase 1 [Yersinia pestis KIM 10]
 gi|45435186|gb|AAS60746.1| alanine racemase (biosynthetic) [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108777157|gb|ABG19676.1| alanine racemase (biosynthetic) [Yersinia pestis Nepal516]
 gi|108781867|gb|ABG15925.1| alanine racemase (biosynthetic) [Yersinia pestis Antiqua]
 gi|115346137|emb|CAL19005.1| alanine racemase (biosynthetic) [Yersinia pestis CO92]
 gi|145212594|gb|ABP42001.1| alanine racemase (biosynthetic) [Yersinia pestis Pestoides F]
 gi|149290041|gb|EDM40118.1| alanine racemase (biosynthetic) [Yersinia pestis CA88-4125]
 gi|162353116|gb|ABX87064.1| alanine racemase [Yersinia pestis Angola]
 gi|165915580|gb|EDR34189.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921422|gb|EDR38646.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990592|gb|EDR42893.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204880|gb|EDR49360.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963348|gb|EDR59369.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048155|gb|EDR59563.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054869|gb|EDR64671.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229679764|gb|EEO75867.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           Nepal516]
 gi|229690578|gb|EEO82632.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696552|gb|EEO86599.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706262|gb|EEO92270.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           Pestoides A]
 gi|262360469|gb|ACY57190.1| alanine racemase [Yersinia pestis D106004]
 gi|262364415|gb|ACY60972.1| alanine racemase [Yersinia pestis D182038]
 gi|270337524|gb|EFA48301.1| alanine racemase [Yersinia pestis KIM D27]
 gi|294352845|gb|ADE63186.1| alanine racemase [Yersinia pestis Z176003]
 gi|320013815|gb|ADV97386.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 359

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 171/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  L+  +R  AVVK NAYG G    A  L +     + V  + E 
Sbjct: 6   AVIDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQD--ADCYGVARISEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++   ++   + S+ QL       +        ++
Sbjct: 64  LMLRAGGIVKPILLLEGFFDAEDLPVLVANHIETAVHSLEQLVALEAA-TLSAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+   +A  F       + + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLACFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +   G + S+A+S GIL  P  H    RPGI LYG +       +   +   +T ++ +I
Sbjct: 183 AGKPGKQ-SIAASGGILRWPQAHRDWVRPGIVLYGVSPFDAPYGRDFGLLPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRSA-----------PSGTPVWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+    + +VGD   ++G ++ ++ VA  +G + Y+L+  + +
Sbjct: 291 GREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELITNLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|306846133|ref|ZP_07478695.1| alanine racemase [Brucella sp. BO1]
 gi|306273384|gb|EFM55245.1| alanine racemase [Brucella sp. BO1]
          Length = 399

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 194/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVALLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKEPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVAKGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|284107226|ref|ZP_06386367.1| Alanine racemase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829973|gb|EFC34252.1| Alanine racemase [Candidatus Poribacteria sp. WGA-A3]
          Length = 386

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 182/373 (48%), Gaps = 23/373 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             IDL AL +N   +   L+      AV+K N YG G + +A AL   GV+ F V SV E
Sbjct: 12  AIIDLNALAHNLRELRRVLAPRVDILAVIKANGYGHGYKALAEALSQLGVRRFGVASVHE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           GV LR       + V+ G+ PGQ K +   NLIP +S    +   S+ +S     +P  +
Sbjct: 72  GVLLREAGRLEDVIVMGGMLPGQVKDLVHANLIPTLSDADTMHALSREVSQHDRPYPIHV 131

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG  RLG + +E L    +     L     +++HLA AD+P      +QL+RF   +
Sbjct: 132 KVDTGMRRLGFTTREVLPLLQSPAFSHLLSCQGLMTHLADADNPDPAFTLLQLDRFHETV 191

Query: 187 SHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAEA 240
           S             A+++ IL  P  H  + RPG+ LYG T   ++  P+  Q V++   
Sbjct: 192 SSLPANGPRPWRHAANTAAILWHPRAHLDMVRPGLLLYGYTPAQDRDVPVSLQPVLSLTT 251

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ ++ A  GE VSYG   +  RDS +A+  IGYA GY   LS             G+ 
Sbjct: 252 KVVHLKTAGKGEPVSYGDLYRTRRDSRLAILPIGYAHGYNRRLSNT-----------GEV 300

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            I     PI+G+I MDMT+ D+TD  +I+ GD + + G      I   D+A    +  Y+
Sbjct: 301 IIHDRRFPIVGRICMDMTVVDVTDDPTIKQGDDVILMGRSATQAITAYDLANWQDSIPYE 360

Query: 357 LLVRIGTRYAKFY 369
           +L  +G    + Y
Sbjct: 361 VLCNLGPNVPREY 373


>gi|290476881|ref|YP_003469792.1| alanine racemase 1, PLP-binding, biosynthetic [Xenorhabdus bovienii
           SS-2004]
 gi|289176225|emb|CBJ83030.1| alanine racemase 1, PLP-binding, biosynthetic [Xenorhabdus bovienii
           SS-2004]
          Length = 359

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 178/366 (48%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +   + +++  AVVK NAYG G  ++A  + +     F V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRVKAPDSKLVAVVKANAYGHGFLEVAYTMED--ADSFGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     +  ++   ++  V+ S+ QL    +  +        ++
Sbjct: 64  LALRNGGIVKPILLLEGFFEAADLPVLVVNHIETVVHSIEQLEALEQA-NLSHPIKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+ + EA +F         + Q   I+SH + AD+ +      Q++RF   I
Sbjct: 123 LDTGMHRLGVRIDEAEEFYQRLSCCHNVEQPVNIVSHFSRADELTVDTTPQQIDRFMAFI 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
           +   G E S+A+S GILL P  H    RPGI +YG +   +K      +   +T ++ +I
Sbjct: 183 ADKSG-EKSIAASGGILLWPQAHLDWVRPGIMMYGASPIADKTAADFNLIPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK  + E V YGG     RD+ + V A+GY DGYP +              G    I 
Sbjct: 242 AVRKHKSDESVGYGGTWISERDTTLGVVAVGYGDGYPRSA-----------PSGTPVLIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP++G+++MDM   D+      +VGD + ++G  + ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GRKVPLVGRVSMDMITVDLGPECYDKVGDEVTLWGNILPVEKIAEHTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RVVMEY 356


>gi|238782924|ref|ZP_04626952.1| Alanine racemase 1 [Yersinia bercovieri ATCC 43970]
 gi|238716127|gb|EEQ08111.1| Alanine racemase 1 [Yersinia bercovieri ATCC 43970]
          Length = 359

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 172/367 (46%), Gaps = 22/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  I+    +   I S+ QL                ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFAAEDLPILVANRIETAIHSIEQLEALEAA-DLPAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  + A          + + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGVRPEHAPALYQRLSTCRNVIQPVNIMSHFSRADEPQVETTRQQLSCFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARI 242
           +   G + S+A+S GILL P  H    RPGI LYG +  +++ +         +  ++ +
Sbjct: 183 ADKPGKQ-SIAASGGILLWPEAHRDWVRPGIILYGVSP-LDEPYASHFNLLPAMALKSSL 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+  AGE V YGG     RD+ + V AIGY DGYP +              G   ++
Sbjct: 241 IAVREHKAGEPVGYGGTWISERDTRLGVVAIGYGDGYPRSA-----------PSGTPMWV 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  V I+G+++MDM   D+      +VGD + ++G ++ ++ +A  +G + Y+L+ ++ 
Sbjct: 290 NGREVCIVGRVSMDMISVDLGPDAHDKVGDEVLLWGAELPVERIAACTGISAYELITKLT 349

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 350 SRVAMEY 356


>gi|158520074|ref|YP_001527944.1| alanine racemase [Desulfococcus oleovorans Hxd3]
 gi|254802360|sp|A8ZRV0|ALR_DESOH RecName: Full=Alanine racemase
 gi|158508900|gb|ABW65867.1| alanine racemase [Desulfococcus oleovorans Hxd3]
          Length = 390

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/387 (26%), Positives = 174/387 (44%), Gaps = 34/387 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              +IDL A+ +N  ++ AL+    R  A VK + YG G  ++A     +G     V+ +
Sbjct: 6   AWAEIDLDAVAHNVAALKALTRPACRLMAAVKADGYGHGMCEVASVALESGASALGVSRI 65

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           +E + LR +   A I VL      + + + D NLI  + ++ +    S+   + G +   
Sbjct: 66  DEALDLRNHGITAPILVLGHTPAHRCREMVDQNLIQTVCALAEAQALSRAATAIGATVSV 125

Query: 125 ALQVDTGFNRLGL--------SLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            L+VDTG  RLG+        + QEA         +        + +H ACAD       
Sbjct: 126 HLKVDTGMGRLGINTVVPGRTAPQEAAVKEALAVLDLPGLAAEGVFTHFACADSADKTHA 185

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           + Q +RF TLI   +           A+S+ ++  P  H  + R GI++YG         
Sbjct: 186 NAQFKRFSTLIQELEAAGRPVAVRHAANSAALIDMPETHLDMVRAGIAIYGLYPSAEVDR 245

Query: 231 P---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++  +  + R+  ++K  AG  VSYG      + +++AV ++GYADG    LS   
Sbjct: 246 QKVALKPAMAFKTRVAQVKKVPAGFTVSYGATYTTPKPTVLAVVSVGYADGLNRLLSSR- 304

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G   ++G  VP++G+I MD+TM D+     + VGD + IFG      I  
Sbjct: 305 ----------GFMLVRGCRVPLVGRICMDLTMLDVGGVPDVAVGDEVVIFGSQNGAFIGA 354

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
           D++A A  T +Y+++  I  R  + Y 
Sbjct: 355 DEIADALNTISYEVVTSITGRVPRVYC 381


>gi|260770257|ref|ZP_05879190.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972]
 gi|260615595|gb|EEX40781.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972]
          Length = 387

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/368 (30%), Positives = 182/368 (49%), Gaps = 20/368 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +  IDL AL++N+  + ALSG+ +  AV+K +AYG G  ++A AL +     F V+ +E
Sbjct: 4   AQAHIDLNALQHNYRRLKALSGSQQVVAVIKGDAYGHGAVQLASALPD--ADRFAVSRLE 61

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  +LRL      I +L G     + K   +  L   I    QL    +  +        
Sbjct: 62  EAEELRLAGITQPILLLEGCFCADDLKRAAELKLDTTIHCEEQLHDL-ETSTLAHPIHVW 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+VDTG +RLG+   +  ++        KL +    ISH +CADD +      QL  F  
Sbjct: 121 LKVDTGMHRLGVQPFQVPEYVSRIERTHKLNEKLGFISHFSCADDINHPTTQRQLACFNQ 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEAR 241
             + Y G   ++A+S+GIL  P   F + R GI+L+G +       + H +  V+T   R
Sbjct: 181 ATAQYDG-PKTIANSAGILFWPESQFDVARAGIALFGISPSAEHTGRDHALVPVMTLNTR 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +RK  A   V YG      +D+ I V A+GY DGYP +              G   F
Sbjct: 240 LIAVRKHQASRPVGYGETWHAQQDTHIGVIAMGYGDGYPRSA-----------PSGTPVF 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VPI+G+++MDM   D+    + +VGD ++++G ++ ++ +A   GT  Y+L +++
Sbjct: 289 VNGRLVPIVGRVSMDMITVDLGPDATDQVGDVVEMWGKNLPIETIANHVGTIPYELTIKL 348

Query: 362 GTRYAKFY 369
             R  + Y
Sbjct: 349 TPRVHRHY 356


>gi|83269232|ref|YP_418523.1| alanine racemase [Brucella melitensis biovar Abortus 2308]
 gi|20531982|sp|Q8YD03|ALR_BRUME RecName: Full=Alanine racemase
 gi|123545437|sp|Q2YIU9|ALR_BRUA2 RecName: Full=Alanine racemase
 gi|82939506|emb|CAJ12478.1| Alanine racemase:Protein of unknown function
           UPF0001:ATP/GTP-binding site motif A (P-loop) [Brucella
           melitensis biovar Abortus 2308]
          Length = 396

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 195/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 367 TIPYEILTALGNRYARVYV 385


>gi|154500510|ref|ZP_02038548.1| hypothetical protein BACCAP_04183 [Bacteroides capillosus ATCC
           29799]
 gi|150270741|gb|EDM98037.1| hypothetical protein BACCAP_04183 [Bacteroides capillosus ATCC
           29799]
          Length = 380

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 106/389 (27%), Positives = 173/389 (44%), Gaps = 34/389 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M +  +   +I L  L++N+ ++ AL     R   VVK NAYG G   +A  L   G + 
Sbjct: 4   MQTRTWR--EISLANLEHNYRALRALLPQGCRFLGVVKANAYGNGAVPVAKRLEELGTEY 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSC 118
             V  V+E  +LR    +  I VL          +   +L   +  +       +  ++ 
Sbjct: 62  LAVACVDEAAELREAGVKTPILVLGDTPNECAADLLRLDLTQNVPDLETARALSAAAVAA 121

Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-----LDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           G +    ++VDTG +RLG    EA     ++    +      +   I +H + + D +  
Sbjct: 122 GKTMKVHMKVDTGMSRLGFLCDEAHMDASVEALAVASRLPGLEAEGIFTHFSDS-DGNEE 180

Query: 174 VNSVQLERFRTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227
              +Q  RF  ++     +GI       A+S  +L  P  +  + RPGI+LYG     + 
Sbjct: 181 YTMLQFGRFLAVLDRLAERGITFPIRHCANSGAVLHYPCTYLDMVRPGIALYGHYPAPDC 240

Query: 228 ---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
                  ++ V+  ++RI  +R   AG  VSYG    L RDSL+AV  IGYADG P   S
Sbjct: 241 EGLDGPGLRPVMELKSRIATVRALPAGTCVSYGRTCTLQRDSLLAVVPIGYADGLPRLCS 300

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                       G +  ++G   PI+G++ MDM M D+TD   ++ GD   ++G D    
Sbjct: 301 N-----------GLEMLVRGQRAPIVGRVCMDMCMVDVTDIPGVQPGDVATVYGSDGDET 349

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + ++  A  +GT  Y+LL  +  R  + Y
Sbjct: 350 VTVEAAAERAGTIQYELLCAVSERVPRVY 378


>gi|260167680|ref|ZP_05754491.1| Alr, alanine racemase [Brucella sp. F5/99]
 gi|261757116|ref|ZP_06000825.1| alanine racemase [Brucella sp. F5/99]
 gi|261737100|gb|EEY25096.1| alanine racemase [Brucella sp. F5/99]
          Length = 399

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 194/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|225629379|ref|ZP_03787412.1| alanine racemase [Brucella ceti str. Cudo]
 gi|254705613|ref|ZP_05167441.1| Alr, alanine racemase [Brucella pinnipedialis M163/99/10]
 gi|256029226|ref|ZP_05442840.1| Alr, alanine racemase [Brucella pinnipedialis M292/94/1]
 gi|261313023|ref|ZP_05952220.1| alanine racemase [Brucella pinnipedialis M163/99/10]
 gi|265986214|ref|ZP_06098771.1| alanine racemase [Brucella pinnipedialis M292/94/1]
 gi|225615875|gb|EEH12924.1| alanine racemase [Brucella ceti str. Cudo]
 gi|261302049|gb|EEY05546.1| alanine racemase [Brucella pinnipedialis M163/99/10]
 gi|264658411|gb|EEZ28672.1| alanine racemase [Brucella pinnipedialis M292/94/1]
          Length = 399

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 194/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|254690758|ref|ZP_05154012.1| Alr, alanine racemase [Brucella abortus bv. 6 str. 870]
 gi|256255941|ref|ZP_05461477.1| Alr, alanine racemase [Brucella abortus bv. 9 str. C68]
 gi|260756329|ref|ZP_05868677.1| alanine racemase [Brucella abortus bv. 6 str. 870]
 gi|260882153|ref|ZP_05893767.1| alanine racemase [Brucella abortus bv. 9 str. C68]
 gi|297249298|ref|ZP_06932999.1| alanine racemase [Brucella abortus bv. 5 str. B3196]
 gi|260676437|gb|EEX63258.1| alanine racemase [Brucella abortus bv. 6 str. 870]
 gi|260871681|gb|EEX78750.1| alanine racemase [Brucella abortus bv. 9 str. C68]
 gi|297173167|gb|EFH32531.1| alanine racemase [Brucella abortus bv. 5 str. B3196]
          Length = 399

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 195/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMMALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|217077374|ref|YP_002335092.1| alr alanine racemase [Thermosipho africanus TCF52B]
 gi|217037229|gb|ACJ75751.1| alr alanine racemase [Thermosipho africanus TCF52B]
          Length = 364

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 149/369 (40%), Gaps = 27/369 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I++     N          A+   V+K NAYG G   +A +    G+  F V  +EE 
Sbjct: 10  AEININNYIENLKYFQKKCSPAKVMPVIKANAYGHGAVMLAKSAEKMGIDYFAVAFLEEA 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR       I V   +      +  D N+   I S  Q+  Y  L+         + +
Sbjct: 70  LILRKNGINTNILVFNYLDKDFVPLAADNNITITIISNEQVEEYKDLI---KKPKVHINI 126

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERFRTL 185
           DTG NR+G+  ++A+       +    ++  I +H A AD            Q E+F  +
Sbjct: 127 DTGMNRVGIEPKDAMKIYEKLIS-NGFEVEGIYTHFAVADSLKKEDIEFTKKQYEKFLEV 185

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEARIIL 244
             +         +S+  L G        R GI+ YG       K   ++ V+T ++ +  
Sbjct: 186 --NLPVKIRHTNNSAASLSGIISCGDYVRIGIASYGLMPSNQVKDENLKPVLTWKSVVSH 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++    GE VSYG       D  +A   +GYADGY   LS             G+  I G
Sbjct: 244 VKTLKKGESVSYGRTFVAPYDMKVATIPVGYADGYWRHLSN-----------NGEVLING 292

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVR 360
               ILG++ MD  + +  D   +++GD + + G      I  +++A   GT NY++  R
Sbjct: 293 KRRKILGRVCMDQFVVEADD--EVKIGDEVILIGKQGNEFISAEEIADKVGTINYEVTCR 350

Query: 361 IGTRYAKFY 369
           I  R  + Y
Sbjct: 351 ISERVPRIY 359


>gi|254720214|ref|ZP_05182025.1| Alr, alanine racemase [Brucella sp. 83/13]
 gi|265985224|ref|ZP_06097959.1| alanine racemase [Brucella sp. 83/13]
 gi|306838644|ref|ZP_07471480.1| alanine racemase [Brucella sp. NF 2653]
 gi|264663816|gb|EEZ34077.1| alanine racemase [Brucella sp. 83/13]
 gi|306406287|gb|EFM62530.1| alanine racemase [Brucella sp. NF 2653]
          Length = 399

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 194/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTILSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKEPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVAKGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|23500650|ref|NP_700090.1| alanine racemase [Brucella suis 1330]
 gi|161620975|ref|YP_001594861.1| alanine racemase [Brucella canis ATCC 23365]
 gi|31076598|sp|Q8FVC1|ALR_BRUSU RecName: Full=Alanine racemase
 gi|189027529|sp|A9MCK3|ALR_BRUC2 RecName: Full=Alanine racemase
 gi|23464295|gb|AAN34095.1| alanine racemase [Brucella suis 1330]
 gi|161337786|gb|ABX64090.1| alanine racemase [Brucella canis ATCC 23365]
          Length = 396

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 194/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 367 TIPYEILTALGNRYARVYV 385


>gi|51594730|ref|YP_068921.1| alanine racemase [Yersinia pseudotuberculosis IP 32953]
 gi|186893733|ref|YP_001870845.1| alanine racemase [Yersinia pseudotuberculosis PB1/+]
 gi|51588012|emb|CAH19616.1| alanine racemase (biosynthetic) [Yersinia pseudotuberculosis IP
           32953]
 gi|186696759|gb|ACC87388.1| alanine racemase [Yersinia pseudotuberculosis PB1/+]
          Length = 359

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 171/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  L+  +R  AVVK NAYG G    A  L +     + V  + E 
Sbjct: 6   AVIDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQD--ADCYGVARISEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++   ++   + S+ QL       +        ++
Sbjct: 64  LMLRAGGIVKPILLLEGFFDAEDLPVLVANHIETAVHSLEQLVALEAA-TLSAPINAWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+   +A  F       + + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLACFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +   G + S+A+S GIL  P  H    RPGI LYG +       +   +   +T ++ +I
Sbjct: 183 AGKPGKQ-SIAASGGILRWPQAHRDWVRPGIVLYGVSPFDTPYGRDFGLLPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRSA-----------PSGTPVWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+    + +VGD   ++G ++ ++ VA  +G + Y+L+  + +
Sbjct: 291 GREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELITNLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|17988719|ref|NP_541352.1| alanine racemase, catabolic [Brucella melitensis bv. 1 str. 16M]
 gi|62317251|ref|YP_223104.1| alanine racemase [Brucella abortus bv. 1 str. 9-941]
 gi|189022512|ref|YP_001932253.1| Alr, alanine racemase [Brucella abortus S19]
 gi|237816811|ref|ZP_04595803.1| alanine racemase [Brucella abortus str. 2308 A]
 gi|254695937|ref|ZP_05157765.1| Alr, alanine racemase [Brucella abortus bv. 3 str. Tulya]
 gi|254698537|ref|ZP_05160365.1| Alr, alanine racemase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731984|ref|ZP_05190562.1| Alr, alanine racemase [Brucella abortus bv. 4 str. 292]
 gi|256043789|ref|ZP_05446711.1| Alr, alanine racemase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256111166|ref|ZP_05452202.1| Alr, alanine racemase [Brucella melitensis bv. 3 str. Ether]
 gi|260544489|ref|ZP_05820310.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260564974|ref|ZP_05835459.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|260759757|ref|ZP_05872105.1| alanine racemase [Brucella abortus bv. 4 str. 292]
 gi|260762996|ref|ZP_05875328.1| alanine racemase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261216365|ref|ZP_05930646.1| alanine racemase [Brucella abortus bv. 3 str. Tulya]
 gi|265990216|ref|ZP_06102773.1| alanine racemase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265992677|ref|ZP_06105234.1| alanine racemase [Brucella melitensis bv. 3 str. Ether]
 gi|17984530|gb|AAL53616.1| alanine racemase, catabolic [Brucella melitensis bv. 1 str. 16M]
 gi|62197444|gb|AAX75743.1| Alr, alanine racemase [Brucella abortus bv. 1 str. 9-941]
 gi|189021086|gb|ACD73807.1| Alr, alanine racemase [Brucella abortus S19]
 gi|237787624|gb|EEP61840.1| alanine racemase [Brucella abortus str. 2308 A]
 gi|260097760|gb|EEW81634.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260152617|gb|EEW87710.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|260670075|gb|EEX57015.1| alanine racemase [Brucella abortus bv. 4 str. 292]
 gi|260673417|gb|EEX60238.1| alanine racemase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260917972|gb|EEX84833.1| alanine racemase [Brucella abortus bv. 3 str. Tulya]
 gi|262763547|gb|EEZ09579.1| alanine racemase [Brucella melitensis bv. 3 str. Ether]
 gi|263000885|gb|EEZ13575.1| alanine racemase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 399

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 195/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|227112420|ref|ZP_03826076.1| alanine racemase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 360

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/375 (28%), Positives = 172/375 (45%), Gaps = 23/375 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +       I+  AL++N   +  L+  ++  A+VK NAYG G    A    +     +
Sbjct: 1   MKT---ATAVINRRALRHNLQRIRQLAPGSQVVAIVKANAYGHGMIDAAHTFSD--ADCY 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  + E + LR       I +L G     +  ++ +  L   + S  QL    ++ +  
Sbjct: 56  GVARLSEALALRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHSPEQLAALEQV-TLP 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
              P  +++D+G +RLG+  + A  F       + + Q   I+SH   AD+P +     Q
Sbjct: 115 QPIPVWMKLDSGMHRLGVLPEHADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQ 174

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235
           L  F        G + S+A+S GILL P  H    RPGI LYG +   N+       Q  
Sbjct: 175 LACFDAFTQGKPGAQ-SIAASGGILLWPQSHRDRVRPGIILYGVSPLDNEDAAHFGFQPA 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + +I +R+  AGE V YGG     R++ + V A+GY DGYP               
Sbjct: 234 MTFTSHLIAVREHNAGEAVGYGGTWTSPRNTRLGVVAVGYGDGYPRCA-----------P 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    I G  VP+ G+++MDM   D+  +   +VGD + ++GP + ++ +A  +G + Y
Sbjct: 283 AGTPVLINGREVPLSGRVSMDMITVDLGPNAQDKVGDEVILWGPTLPVERIAAHTGASAY 342

Query: 356 DLLVRIGTRYAKFYT 370
           +L+ R+  R A  Y 
Sbjct: 343 ELITRLTQRTALEYV 357


>gi|254703242|ref|ZP_05165070.1| Alr, alanine racemase [Brucella suis bv. 3 str. 686]
 gi|260567824|ref|ZP_05838293.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261753873|ref|ZP_05997582.1| alanine racemase [Brucella suis bv. 3 str. 686]
 gi|260154489|gb|EEW89570.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261743626|gb|EEY31552.1| alanine racemase [Brucella suis bv. 3 str. 686]
          Length = 399

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 194/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|167629789|ref|YP_001680288.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1]
 gi|167592529|gb|ABZ84277.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1]
          Length = 409

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 106/384 (27%), Positives = 159/384 (41%), Gaps = 30/384 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +I L+A  +N   +   +   AR  AV+K + YG G   +A      GV  F V 
Sbjct: 37  RPAWAEIRLSAFAHNLQVLRRATQPQARLMAVIKADGYGHGAVALAWEAVRQGVDCFVVA 96

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
            ++E +KLR       I +L    P     +   +L   +         S      G + 
Sbjct: 97  LLDEALKLRDAGITTPILILGYTPPAACYRVVAEDLSQAVYCRTVAEALSAAALRLGRTA 156

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V+TG  R+G    E +             +  + SH A AD+P       QLERF
Sbjct: 157 RIHLKVETGMGRVGFQGDEGVREMLAIARLPGIAVEGVFSHFATADEPDKSFAREQLERF 216

Query: 183 RTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234
            T+    +          +A+S+ IL  P  H +  RPGI+LYG +              
Sbjct: 217 LTITGRLQQAGLDIPMRHMANSAAILDLPESHLEGVRPGIALYGSSPFDGVRWDGAFLVP 276

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T +ARII I++  AG  +SYG   +  R + IA   +GYADG   TLSG    +    
Sbjct: 277 VMTLKARIIFIKEVAAGTPISYGCTYRCPRRTRIATIPLGYADGIRRTLSGRIGAYKGER 336

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--------KLDDV 346
           +            P +G+I MD  M DI D+  +  GD + +FG            ++D 
Sbjct: 337 YF-----------PQVGRICMDQFMIDIGDA-ELAEGDEVTLFGRWQEGGTWRTAPVEDW 384

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A A GT +Y++L  I  R  + Y 
Sbjct: 385 ARADGTISYEILSGISPRVPRHYV 408


>gi|153948196|ref|YP_001402718.1| alanine racemase [Yersinia pseudotuberculosis IP 31758]
 gi|152959691|gb|ABS47152.1| alanine racemase [Yersinia pseudotuberculosis IP 31758]
          Length = 359

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 170/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  L+  +R  AVVK NAYG G    A  L +     + V  + E 
Sbjct: 6   AVIDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQD--ADCYGVARISEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++   ++   + S+ QL                ++
Sbjct: 64  LMLRAGGIVKPILLLEGFFDAEDLPVLVANHIETAVHSLEQLVALEAAR-LSAPINAWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+   +A  F       + + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLACFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +   G + S+A+S GIL  P  H    RPGI LYG +       +   +   +T ++ +I
Sbjct: 183 AGKPGKQ-SIAASGGILRWPQAHRDWVRPGIVLYGVSPFDAPYGRDFGLLPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRSA-----------PSGTPVWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+    + +VGD   ++G ++ ++ VA  +G + Y+L+  + +
Sbjct: 291 GREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELITNLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|307132473|ref|YP_003884489.1| alanine racemase 1, PLP-binding, biosynthetic [Dickeya dadantii
           3937]
 gi|306530002|gb|ADM99932.1| alanine racemase 1, PLP-binding, biosynthetic [Dickeya dadantii
           3937]
          Length = 358

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 167/366 (45%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +R  A+VK NAYG G  + A A  +     + V+ + E 
Sbjct: 6   AVIDRQALRHNLQRIRQMAPQSRLIAIVKANAYGHGAVEAARAFSD--ADGYGVSRLSEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     E  ++ +  L   +    QL    +           ++
Sbjct: 64  LALRAAGITKPILLLEGFFAADELPLLAEHQLETAVHCEEQLAALEQAR-LPHPLTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F         + Q   I+SH   AD+P +     QL+ F   +
Sbjct: 123 LDTGMHRLGVLPEKAEAFYARLSACANVVQPVNIMSHFCRADEPQAGTTQHQLDCFDAFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI  YG +           ++  +T  + +I
Sbjct: 183 QDKPGRQ-SIAASGGILLWPQTHRDQIRPGIIQYGVSPLAQGDASQWQLKPAMTLTSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  A E V YGG     R + + V AIGY DGYP                G   +I 
Sbjct: 242 AVREHHADEPVGYGGTWTSPRATRMGVIAIGYGDGYPR-----------DAKSGTPVWIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP+ G+++MDM   D+  +   +VGD + ++G  + ++ VA  SG + Y+L+ R+ +
Sbjct: 291 GREVPLSGRVSMDMITVDLGPNAQDKVGDEVILWGGPLPVEKVAAHSGISAYELITRLTS 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RTRLEY 356


>gi|295104133|emb|CBL01677.1| alanine racemase [Faecalibacterium prausnitzii SL3/3]
          Length = 400

 Score =  385 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 94/394 (23%), Positives = 160/394 (40%), Gaps = 35/394 (8%)

Query: 1   MHSNEF---LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M    F   +  +IDL AL+ N+  + A +G     AVVK ++YG G  + A      G 
Sbjct: 1   MQKQPFEKHVWAEIDLEALRYNFREVKARAGALPLCAVVKADSYGHGAVQCARVFAEEGA 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116
               V+ + E V+LR       I +L  + P     +   ++     S+ Q    S+   
Sbjct: 61  AWLAVSCLTEAVQLRKAGQTLPILILGHVQPAYAAALIQNDITVACYSLAQARALSEAAV 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHN----SFNKKLGQLSLIISHLACADD--- 169
           + G      L+ DTG  R+G +L+   D        +      +++ +  H + ADD   
Sbjct: 121 AAGGKVHIHLKADTGMGRIGFALRTDFDAAIREMLEACALPGLEMTGLFQHFSVADDTAP 180

Query: 170 PSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNY------HFQLTRPGIS 218
            +    + Q   F       K            +S+G++L P++         + RPGI 
Sbjct: 181 ENVAYTAEQHALFVKAFHALKAAGREPALVHCDNSAGVMLHPDWPEGLPRERCMARPGII 240

Query: 219 LYGGTDKINKSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
           LYG            + V+T +  + +I++   G+  SYG +    + + +A    GYAD
Sbjct: 241 LYGYDPSDEVRFGRFKPVMTLKTVVSMIKEMQPGQCASYGRRFTAEKPTKVATLCTGYAD 300

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           GYP  LS             G   I G   P+LG++ MD  M D+TD   +   D   ++
Sbjct: 301 GYPRLLS----------CGKGVVEIHGKACPVLGRVCMDQMMVDVTDVPEVREDDEAILW 350

Query: 338 GPDI--KLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G  +    + +A  + T  Y++L  +  R  + Y
Sbjct: 351 GGTVSDTAETIARKTDTIPYEVLCGVSRRVPRVY 384


>gi|170026067|ref|YP_001722572.1| alanine racemase [Yersinia pseudotuberculosis YPIII]
 gi|169752601|gb|ACA70119.1| alanine racemase [Yersinia pseudotuberculosis YPIII]
          Length = 359

 Score =  385 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 171/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  L+  +R  AVVK NAYG G    A  L +     + V  + E 
Sbjct: 6   AVIDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQD--ADCYGVARISEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++   ++   + S+ QL       +        ++
Sbjct: 64  LMLRAGGIVKPILLLEGFFDAEDLPVLVANHIETAVHSLEQLVALEAA-TLSAPINAWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+   +A  F       + + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLACFDAFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +   G + S+A+S GIL  P  H    RPGI LYG +       +   +   +T ++ +I
Sbjct: 183 AGKPGKQ-SIAASGGILRWPQAHRDWVRPGIVLYGVSPFDAPYGRDFGLLPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRSA-----------PSGTPVWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+    + +VGD   ++G ++ ++ VA  +G + Y+L+  + +
Sbjct: 291 GREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELITNLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|306841349|ref|ZP_07474058.1| alanine racemase [Brucella sp. BO2]
 gi|306288652|gb|EFM59988.1| alanine racemase [Brucella sp. BO2]
          Length = 399

 Score =  385 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 194/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           + L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  MALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKEPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVAKGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGMLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|157825267|ref|YP_001492987.1| alanine racemase [Rickettsia akari str. Hartford]
 gi|166969426|sp|A8GM54|ALR_RICAH RecName: Full=Alanine racemase
 gi|157799225|gb|ABV74479.1| alanine racemase [Rickettsia akari str. Hartford]
          Length = 355

 Score =  385 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 185/365 (50%), Gaps = 21/365 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+++A+KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV + EEG
Sbjct: 6   LEINISAIKNNYLLLQGICKTSLVGAAVKANGYGLGAVQISKALIKENCRYFFVATSEEG 65

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRKALGLDVDILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKHRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL  F+  +
Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNIFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            ++  ++ASLA+S GI LG +YHF L RPG +LYG    +         VT +A II ++
Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPVMKNP------VTLKAPIIHLQ 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                  + Y       RDS+IA   +GYADG+    S             G+ FI G  
Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINGRS 288

Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VPI+G+I+MD+   D+TD   +++  G   +I G     D +A   GT  Y++L  +G+R
Sbjct: 289 VPIVGRISMDLINIDVTDLPPLDIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSR 348

Query: 365 YAKFY 369
           Y + Y
Sbjct: 349 YKRIY 353


>gi|229059775|ref|ZP_04197152.1| Alanine racemase [Bacillus cereus AH603]
 gi|228719604|gb|EEL71205.1| Alanine racemase [Bacillus cereus AH603]
          Length = 408

 Score =  385 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A +   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L    ++           
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLQGIDEVANHLQKKVRIH 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTNMQTNLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  + +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAEELGIHFPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVASLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  ++ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D+T+++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQGEEEIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|310659416|ref|YP_003937137.1| alanine racemase [Clostridium sticklandii DSM 519]
 gi|308826194|emb|CBH22232.1| Alanine racemase [Clostridium sticklandii]
          Length = 384

 Score =  385 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 171/381 (44%), Gaps = 26/381 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           H+      +I+L  +K N++++  L     +  AV+K NAYG G  + A  L   G   F
Sbjct: 3   HTFRPTWAEINLDHVKANYNNIRKLLKPETKFCAVIKANAYGHGAVQYAKVLDKEGADYF 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119
            V   EE ++LR  +    I  L  +   + K +   N+   I S  +    S++     
Sbjct: 63  AVAVCEEALELRQNSITKPIMCLGYVPEDRFKDMMQNNVDITIYSYEKAALLSQIAKDNN 122

Query: 120 VSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           ++    +++D+G +RLGL    EA+D        +  ++  I +H A ADD        Q
Sbjct: 123 LNAKIHIKLDSGMSRLGLQCDNEAVDEILKISTLENLEIVGIFTHFALADDKDLSYTHEQ 182

Query: 179 LERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230
            + +  +++    KG++     + +S+  ++ P YH  + RPGI LYG     +      
Sbjct: 183 YKNYSFVVNELETKGLKIPIKHVCNSAATMMLPEYHLDMVRPGIILYGHYPSDDVDKSKV 242

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +   +  ++ +  ++K   G  +SYG + +   + +IA   IGYADG+   LSG     
Sbjct: 243 KLYPAMALKSTVAHVKKLEEGRGISYGHKYRSKENEIIATIPIGYADGFTRMLSGQ---- 298

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVAL 348
                      +   MVP++G+I MD  M  +      +VGD I IF  +  + ++  A 
Sbjct: 299 -------ADVKLNDKMVPVVGRICMDQCMLSL--EEEAKVGDQITIFSDEEGMDIERFAQ 349

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+LL  +  R  + Y
Sbjct: 350 RLGTINYELLCMVQRRVPRIY 370


>gi|254473465|ref|ZP_05086862.1| alanine racemase [Pseudovibrio sp. JE062]
 gi|211957581|gb|EEA92784.1| alanine racemase [Pseudovibrio sp. JE062]
          Length = 383

 Score =  385 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 138/367 (37%), Positives = 209/367 (56%), Gaps = 9/367 (2%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            +L IDLTAL++NW  +N   G+  T AVV K N YG G  ++   LY+AG + FFV   
Sbjct: 20  AKLTIDLTALRSNWCYLNGKVGDGCTCAVVLKANGYGTGAAEVGKTLYHAGARVFFVALP 79

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPY 124
           EEG++LR   P A I+VL G+   +EK  +D +L PV++S+ ++  +S    S     P 
Sbjct: 80  EEGIELRKELPHAEIYVLNGLFRHREKFYYDFDLKPVLNSLEEVAEWSSFAQSLQEELPA 139

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           AL  DTG +RLG+S+ +AL    ++   K  ++ L++SHLACAD P   +N  QL RF+ 
Sbjct: 140 ALHFDTGMHRLGMSIGDALQIGESAHLLKSIRIDLVMSHLACADTPDHGLNEKQLNRFQR 199

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           +   +     SL++S+GI LG +YHF + RPGI+LYGG    ++++PM  V   +A II 
Sbjct: 200 VCELFPEARKSLSNSAGIFLGDDYHFDMVRPGIALYGGNPVPDETNPMLPVAHVQAEIIS 259

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+   G+ V YG  +   R S IA    GYADG    +   D +       G + +I G
Sbjct: 260 LREVPHGDPVGYGASRVTPRKSRIATINAGYADGLHRLVGSSDDQ-----PNGARVYIGG 314

Query: 305 YMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           +  PI G+++MDM   D+TD     +  G  ++I G  + +D++A  + T  Y+LL  +G
Sbjct: 315 HFAPIFGRVSMDMIAVDVTDIPEEHLSRGAPVEIMGAHVNVDELAEFAQTIPYELLCSLG 374

Query: 363 TRYAKFY 369
            RY + Y
Sbjct: 375 ARYTRHY 381


>gi|153008776|ref|YP_001369991.1| alanine racemase [Ochrobactrum anthropi ATCC 49188]
 gi|151560664|gb|ABS14162.1| alanine racemase [Ochrobactrum anthropi ATCC 49188]
          Length = 380

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 197/366 (53%), Gaps = 19/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+AL++N+ ++       R AAVVK +AYGLG  ++APA Y+AG +DFFV  + E 
Sbjct: 21  LTIDLSALRHNYSAIARHIAPTRAAAVVKADAYGLGASRVAPAFYDAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           + L+ +  P A ++VL G+ PG E+      ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  IALKPFIQPDATLYVLNGLQPGTEEACAREGILPVLNSLEQIENWAALATRQGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG +RLGLS +E   F  N+       +  +ISHLA  D+P +  N+ QL     L+
Sbjct: 141 QLDTGMSRLGLSPKEFERFLENATLLDAIDIKFVISHLASGDEPENAANARQLANMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +    +  + A+S G  L   YHF L RPG++LYG   K      +  V+T  AR+I +R
Sbjct: 201 ARLPKLPVAFANSGGSFLDKTYHFDLARPGVALYGVGPKSE----IIPVLTLSARVIQVR 256

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YGG         +A  A+GYADG+  +LS             G  F     
Sbjct: 257 DIDKGAAVGYGGAYIAEGPMRVATIAVGYADGWFRSLSN-----------KGAAFFGDTR 305

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+++MD    D++      +++G  +++ GP  +L+DVA    T  Y++L  +G R
Sbjct: 306 LPIIGRVSMDSITLDVSALPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALGNR 365

Query: 365 YAKFYT 370
           YA+ Y 
Sbjct: 366 YARVYV 371


>gi|325915922|ref|ZP_08178218.1| alanine racemase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537889|gb|EGD09589.1| alanine racemase [Xanthomonas vesicatoria ATCC 35937]
          Length = 368

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 174/370 (47%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQALIDLDALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V+S+  Q+   ++  S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEQDELRLIAEHDLWTVVSTPQQVRALAEFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 IWLKLDSGMHRLGLSPEDFRAAWLRLHGLPQIASMVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
            L +     E S+ +S G+L  P      +RPG+ LYG     +    +  ++ V+T  +
Sbjct: 178 ALTAGGMRAETSIRNSPGLLGWPALRNDWSRPGLMLYGANPFPHDTELTTQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R   AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPM 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGQVCPLIGRVSMDMLTVDLTDHPQADIGSGVQLWGDAPRVSPLATQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRVPRVYV 355


>gi|312898652|ref|ZP_07758042.1| alanine racemase [Megasphaera micronuciformis F0359]
 gi|310620571|gb|EFQ04141.1| alanine racemase [Megasphaera micronuciformis F0359]
          Length = 403

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 93/384 (24%), Positives = 152/384 (39%), Gaps = 26/384 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDF 60
           ++   +  +IDL     N   +  ++G  R   AVVK +AYG G   ++      G    
Sbjct: 16  YTKRPVWAEIDLDRAAENMREIRRITGKDRLVTAVVKADAYGHGAVMLSKVFLQNGADRL 75

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCG 119
            V+S++EG +LR     A I +L      + + + D ++ P + S      +S K +  G
Sbjct: 76  AVSSLDEGTELRRAKITAPILILGHTAGERAEELLDNDIEPAVFSYRDAEMFSRKAVETG 135

Query: 120 VSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 +  DTG  R+G     EA++            +  I +H + AD         Q
Sbjct: 136 REVKIHIAADTGMCRIGYVPSPEAIEEVKKIAALPGITMQGIFTHFSEADIADKEWAHEQ 195

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSH 230
             RF   I   KG           +S+G L  P++H ++ RPGI  YG            
Sbjct: 196 HSRFSAFIDALKGAGVTFNIHHCCNSAGTLELPDFHREMIRPGIIQYGYDASKEVLVTGT 255

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V++    I  ++    G+ V YG        + IA   IGYADGY   LS      
Sbjct: 256 KIKPVMSLRCCITHLKTIYEGDCVGYGRHFTAKGPTKIATLPIGYADGYNRALSSKID-- 313

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                      + G     +G I MD  M D++    ++VGD + +FG      +  D++
Sbjct: 314 ---------VIVHGVRAHQVGNICMDQCMIDVSHIPDVKVGDEVVLFGEQGSECVSADEI 364

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A    T  +++   I  R  + Y 
Sbjct: 365 ADTCHTIIHEITCNINRRVPRVYV 388


>gi|253578412|ref|ZP_04855684.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850730|gb|EES78688.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 381

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 89/385 (23%), Positives = 164/385 (42%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M  +  ++  I L A+++N+  M   ++   +  AV+K +AYG G   +A  + +   + 
Sbjct: 1   MKKDSRVKAVISLDAVEHNFREMRKNIAEETKMIAVIKADAYGHGAVPVAHLIEDYDYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
            F   + EE + LR       I +L  +       +    + P +    +    S + + 
Sbjct: 61  GFAAATAEEAIHLREAGITKPILILGIVFDEYFPELVRYEIRPAVCEYEEARKLSDEAVL 120

Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    + +DTG  R+G +  QE ++           ++  + +H A AD+       
Sbjct: 121 QKKTVHIHIALDTGMTRIGFADAQENVEEIKKISELPNLEIEGMFTHFARADEYDRSPAM 180

Query: 177 VQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           VQLER+       +  G+E      ++S+GI+  P  +  + R GI++YG          
Sbjct: 181 VQLERYLDFSRRVEEAGVEIPLHHCSNSAGIIRMPEANLNIVRAGITIYGIYPSSEVERD 240

Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +   + V+  ++ +  ++   AG  +SYGG     R   +A   +GYADGY   LS    
Sbjct: 241 IVKLEPVMELKSHVTYVKDVPAGAAISYGGTYVADRKLRVATVPVGYADGYSRQLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G   PILG++ MD  M D+T+   ++ GD + + G D    I ++
Sbjct: 298 --------KGWVLIHGQKAPILGRVCMDQFMVDVTEIGDVKKGDEVTLIGRDGDEFIGIE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++    G  +Y+    I  R  + Y
Sbjct: 350 EIGDLCGRFSYEFACDISPRVPRVY 374


>gi|229017415|ref|ZP_04174318.1| Alanine racemase [Bacillus cereus AH1273]
 gi|228743978|gb|EEL94077.1| Alanine racemase [Bacillus cereus AH1273]
          Length = 408

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +  +  L   +++ +         
Sbjct: 88  EAIELREAGITVPILILGYTSVAAVEDAIQYDVMMTVYRIEDLQSINEIANRLQKKVQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADETDKAYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +         ++S+G +   N    + R GI +YG        H +   +  ++
Sbjct: 208 VNTAKELGIHFPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHTVVALKPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  ++ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M DIT ++ ++VGD +  +G      I +++VA   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDITKAMPVQVGDEVVFYGKQGEEEIAVEEVADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|119943978|ref|YP_941658.1| alanine racemase [Psychromonas ingrahamii 37]
 gi|119862582|gb|ABM02059.1| alanine racemase [Psychromonas ingrahamii 37]
          Length = 358

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/368 (27%), Positives = 173/368 (47%), Gaps = 20/368 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R  I+L AL++N+  +   +  ++  AV+K NAYG G  K+A  L +  V  F V  + 
Sbjct: 4   IRAVINLKALQHNFQVLQKTAPQSQIIAVIKANAYGHGMVKVAQKLQH--VHAFAVARLS 61

Query: 67  EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E + LR    +  I +L G    G    +   +L  V+ S  Q+    +           
Sbjct: 62  EALILRSAGIKHPIILLGGFFKDGDLATLSAADLQCVVHSQEQVAAIMQA-KLPNPLKIW 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +RLG   ++              Q     ++H   A++ +++  + QL  F+ 
Sbjct: 121 LKLDTGMHRLGFHPEQFDAVYKRLEGSINVQKPINFLTHFHSAEEVNNNATAQQLSLFKQ 180

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEAR 241
            I    G++ SLA+S+ +   P  HF   RPGI+LYG +    ++ K   ++ V+T ++ 
Sbjct: 181 YIQAGSGLK-SLANSAAVFAWPETHFDAVRPGIALYGISPFADRLAKDLQLRPVMTLKSS 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I IR   A E V YG       D+ + V A+GY DGYP                G    
Sbjct: 240 LIAIRDHKARESVGYGAHWTAQNDTQLGVVAMGYGDGYPRLA-----------PEGTPVL 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G +VPI+G+I+MDM   D+      +VGD + ++G  +  + VA   GT  Y+L+ ++
Sbjct: 289 VNGRIVPIVGRISMDMLTIDLGLMNQDKVGDDVTLWGEGLPAEIVAQKIGTIAYELVTKL 348

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 349 TSRVTLHY 356


>gi|229011407|ref|ZP_04168598.1| Alanine racemase [Bacillus mycoides DSM 2048]
 gi|229166972|ref|ZP_04294719.1| Alanine racemase [Bacillus cereus AH621]
 gi|228616600|gb|EEK73678.1| Alanine racemase [Bacillus cereus AH621]
 gi|228749924|gb|EEL99758.1| Alanine racemase [Bacillus mycoides DSM 2048]
          Length = 408

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A +   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L    ++           
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLQGIDEVANHLQKKVRIH 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  + +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAEELGIHFPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVASLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  ++ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D+T+++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQGEEEIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|261320388|ref|ZP_05959585.1| alanine racemase [Brucella ceti M644/93/1]
 gi|261293078|gb|EEX96574.1| alanine racemase [Brucella ceti M644/93/1]
          Length = 396

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 193/379 (50%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP   L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQLLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 367 TIPYEILTALGNRYARVYV 385


>gi|294102372|ref|YP_003554230.1| alanine racemase [Aminobacterium colombiense DSM 12261]
 gi|293617352|gb|ADE57506.1| alanine racemase [Aminobacterium colombiense DSM 12261]
          Length = 372

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 161/378 (42%), Gaps = 24/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R++++L  +++N+ ++    G   +  AVVK +AYG G  ++A +L  AG Q F V 
Sbjct: 4   RPTRMEVNLANIQSNFKTIRRHVGAGPQIMAVVKADAYGHGAVEVAKSLIEAGCQRFAVA 63

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSH 122
           + +E V LR       I VL              ++   ++  V       + ++ G + 
Sbjct: 64  TPDEAVVLREAGINDPILVLGPSPYDAASAYVKHDISAALTDLVFAQMMSREAVNQGKTA 123

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++DTG  R+G   ++      +       ++  + +H A AD+      + Q  R+
Sbjct: 124 LLHLKIDTGMGRIGFLPEQIPGIIDDILKLPGIKIEGLFTHFATADEKRLDYTNQQFARY 183

Query: 183 RTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTV 235
             +      KG+      + +S+ +L  P  H    RPGI LYG         P+  +  
Sbjct: 184 MKVYHFLESKGVRVPLRHVCNSAAVLNSPEKHLDAVRPGIILYGMYPSSECIRPIELKPT 243

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
              +  I  +++  +   V YG +        IAV  IGY DG+   LS           
Sbjct: 244 FEVKTAIAAVKEISSNSGVGYGLRYMSRGTEKIAVLPIGYGDGFSRCLS----------- 292

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
           +     + G  V ++G I MD TM D+TD   ++VGD + I G      I  +++A A G
Sbjct: 293 MKVPVLVHGKRVSLVGNICMDQTMIDVTDIEDVKVGDEVVIVGRQGEEAITPEEIAPARG 352

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++ +    R  + Y
Sbjct: 353 TINYEIPIMFSKRVPRVY 370


>gi|197286571|ref|YP_002152443.1| alanine racemase [Proteus mirabilis HI4320]
 gi|227357646|ref|ZP_03841999.1| alanine racemase (biosynthetic) [Proteus mirabilis ATCC 29906]
 gi|194684058|emb|CAR45397.1| alanine racemase (biosynthetic) [Proteus mirabilis HI4320]
 gi|227162356|gb|EEI47360.1| alanine racemase (biosynthetic) [Proteus mirabilis ATCC 29906]
          Length = 363

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 175/368 (47%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N+  +   + ++   AVVK NAYG G  + A  L +     F V  + E 
Sbjct: 6   AVIDRRALRHNFQHVRDYAPHSHLIAVVKANAYGHGLLETAYTLMD-DADCFGVARIGEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G        I+   ++  V+ S  QL                ++
Sbjct: 65  LTLRSGGIVKPILLLEGFFDAVDLPILVVNHIETVVHSEEQLEALENA-DLEEPVKVWMK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTL 185
           +DTG +RLG+  +EA  F       K + Q   ++SH + AD+P    V   Q++ F+  
Sbjct: 124 LDTGMHRLGVRPEEAEAFYQRLCACKNVQQPVNLVSHFSRADEPDIPEVTQNQIQLFQAF 183

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241
           I    G + S+A+S+GIL  P  H+Q  RPGI  YG +     +  K   +   +T +  
Sbjct: 184 IQDKAG-DKSIAASAGILFWPQVHYQWVRPGIITYGISPTGDNRTGKDFGLTPAMTLKTS 242

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +RK  AGE V YGG     +D+ + V AIGY DGYP +              G   +
Sbjct: 243 LIAVRKHKAGEPVGYGGTWVSEKDTYLGVIAIGYGDGYPRSA-----------PSGTPVW 291

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+   L   VGD   ++G  + ++++A  SG + Y+L+ ++
Sbjct: 292 INGRKVPIVGRVSMDMISVDLGSELIDRVGDEAILWGDVLPVEEIAKYSGISAYELITKL 351

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 352 TSRVIMEY 359


>gi|237807335|ref|YP_002891775.1| alanine racemase [Tolumonas auensis DSM 9187]
 gi|237499596|gb|ACQ92189.1| alanine racemase [Tolumonas auensis DSM 9187]
          Length = 358

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/366 (28%), Positives = 176/366 (48%), Gaps = 20/366 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            R++I+L AL++N+  +   S  ++  AV+K NAYG     +A  L       F V  +E
Sbjct: 5   ARIQINLKALQHNFEKIKKCSPKSKIIAVIKGNAYGHDAVLVAKTLQQ--ADAFAVARIE 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E V LR    +  I +L G    ++ +I       PVI    QL       S        
Sbjct: 63  EAVVLRQAGIERPIVLLEGCFCAKDLLIAAHYQFQPVIHHAGQLADILSA-SLPTPVKVW 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L++DTG +R+G+  ++   +     N   +      +SH   AD+ S+     QL  F  
Sbjct: 122 LKIDTGMHRIGIMPEQVAHYVTQLSNSANVSGHVGFVSHFYRADELSASTTHEQLACFIQ 181

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241
             + Y G E SL++S+G+L   + HF   RPGI+LYG + + + +     +Q V+T ++ 
Sbjct: 182 ATAPYPG-EKSLSNSAGVLYWSDAHFDWVRPGIALYGISPRADSTGIAEGLQPVMTLKST 240

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE + YGG     +D+ I V A+GY DGYP                G    
Sbjct: 241 LISVREHKAGESIGYGGHWIADQDTRIGVIAMGYGDGYPRMA-----------PAGTPVL 289

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  V + G+++MDM   D+      ++GD + ++G  +  ++VA   GT  Y+L+++I
Sbjct: 290 VNGRKVALAGRVSMDMMTVDLGPESQDQIGDEVTLWGNGLPAEEVARHIGTIAYELVIKI 349

Query: 362 GTRYAK 367
            +R  +
Sbjct: 350 TSRVQR 355


>gi|163789953|ref|ZP_02184389.1| D-alanine racemase [Carnobacterium sp. AT7]
 gi|159874893|gb|EDP68961.1| D-alanine racemase [Carnobacterium sp. AT7]
          Length = 390

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 159/384 (41%), Gaps = 26/384 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           + S     ++I L  L +N  +    LS      AVVK + YG G  + A A   AG   
Sbjct: 3   IESYRETWVEIALDHLTDNIKAFKGILSPETALMAVVKADGYGHGAIETAKAAIEAGATY 62

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSVPQLTFYSKLM- 116
             V  ++E + LR       I VL       E  ++  D  +   I S   +    KL  
Sbjct: 63  LAVAFLDEAISLRKAGFSTPILVLGYTSLDTETIEMAIDYGITLTIYSKEAVESIQKLAI 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                    L++D+G NR+G+   E       +          I +H + AD   S    
Sbjct: 123 QKKKVCRIHLKIDSGMNRIGVRTAEEALQIIAAITSDYLVFEGIFTHFSDADAIESTFVH 182

Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKS 229
            Q   F  ++S  +            +++  +  P  H  + R GI +YG   +  +   
Sbjct: 183 DQFNHFMKIVSSIQKKGYTIPIKHCCNTAATIAFPKMHLDMVRIGIGIYGLYPEEHLRTK 242

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T + + ILI++   G+ +SYG     T+DS++A   +GYADG   TLS     
Sbjct: 243 ISLKPVMTFKTKPILIKEVPVGQTISYGRTYTTTKDSIVATIPVGYADGLSRTLSN---- 298

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G   + G+  PI+G++ MD TM D+T+   +   +   +FG      I + +
Sbjct: 299 -------KGHITVNGHKAPIVGRVCMDQTMVDLTEIDPVYFNEEFVLFGDPLDGAISIGE 351

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA   GT +Y++   IG R  + Y
Sbjct: 352 VADQMGTIHYEVACLIGKRVPRIY 375


>gi|163939906|ref|YP_001644790.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
 gi|229132940|ref|ZP_04261783.1| Alanine racemase [Bacillus cereus BDRD-ST196]
 gi|163862103|gb|ABY43162.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
 gi|228650522|gb|EEL06514.1| Alanine racemase [Bacillus cereus BDRD-ST196]
          Length = 408

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A +   AG+    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E ++LR       I +L        + +   +++  +  V  L    ++           
Sbjct: 88  EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLQGIDEVANHLQKKVRIH 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  + +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAEELGIHFPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVASLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  ++ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D+T+++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQDEEEIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|291542251|emb|CBL15361.1| alanine racemase [Ruminococcus bromii L2-63]
          Length = 392

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 164/390 (42%), Gaps = 32/390 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+  +    +I L A+++N++ +   ++ + +   V+K + YG G  +++      G   
Sbjct: 1   MNMVKRTWAEISLNAIEHNYNVIRNKVADDTKVCCVIKADGYGHGAVELSQIYEKLGADF 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSC 118
           F V++++EG+++R    +  I +L      + + + + ++   + S+        K +  
Sbjct: 61  FAVSNIDEGIEIRKSGSKLPIVILGYTPVSEAENLAEYDISQAVFSLEYAKELSEKCVEE 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEA------LDFTHNSFNKKLGQLSLIISHLACADDP-- 170
                  ++VD+G +R+G   QE       ++    +      ++  + +H   +D+   
Sbjct: 121 DCICKMHIKVDSGMSRIGFMCQEFPRDEYSIEEICEACCLPNLEVEGLFTHFCVSDEDAE 180

Query: 171 SSHVNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK 225
                + Q E F  +    K  G++      ++S  I   P     + R GI LYG    
Sbjct: 181 GREFTNKQYENFIHVRDSLKKRGVDISVVHCSNSGAIEDYPETCCDMVRAGIILYGLAPS 240

Query: 226 --INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
             +     +   +T +  +  +++   G  +SYG      R   IA   IGYADG+    
Sbjct: 241 SKLADRLDLVPAMTLKTVVAFVKEVQKGATISYGRTFTADRKMKIATVPIGYADGFIRQ- 299

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---- 339
                         G   + G    I+G+I MD TM D+TD   ++ GD + +FG     
Sbjct: 300 ----------NAKDGYMMVNGKKAKIVGRICMDQTMLDVTDIEDVKTGDEVVVFGTGENG 349

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +   D +A  +GT NY+ +  +G R  + Y
Sbjct: 350 EPTADSLAENTGTINYETVCLVGKRVPRIY 379


>gi|254712683|ref|ZP_05174494.1| Alr, alanine racemase [Brucella ceti M644/93/1]
 gi|254715753|ref|ZP_05177564.1| Alr, alanine racemase [Brucella ceti M13/05/1]
 gi|261217513|ref|ZP_05931794.1| alanine racemase [Brucella ceti M13/05/1]
 gi|260922602|gb|EEX89170.1| alanine racemase [Brucella ceti M13/05/1]
          Length = 399

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 193/379 (50%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP   L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQLLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|260773727|ref|ZP_05882642.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14]
 gi|260610688|gb|EEX35892.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14]
          Length = 366

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 180/374 (48%), Gaps = 23/374 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +    +  IDL AL++N+  + +LSG  +  AV+K +AYG G  ++A AL       F
Sbjct: 1   MKT---AQASIDLIALRHNYLRLKSLSGQQKLIAVIKGDAYGHGAVQLAKAL--PMADWF 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  VEE  +L        + +L G     + +   D  L  VI    QL    +  +  
Sbjct: 56  AVARVEEAEELIANGIDQPVLLLEGCFCADDLQRAADLKLATVIHCEEQLRDLEQ-SNLA 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQ 178
                 L++DTG +RLG+  ++  ++        KL      +SH +CADD S      Q
Sbjct: 115 NPISIWLKIDTGMHRLGVQPEQVTEYVQRIERSGKLKGQLGFMSHFSCADDLSHPATLKQ 174

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTV 235
           +E F      Y G   SLA+S+GIL  P   F + R GI+LYG +  +      H +  V
Sbjct: 175 IECFSQAAFPYSG-PKSLANSAGILFWPESQFNVARAGIALYGISPSLYHSGIDHQLLPV 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T   R+I +R+  A + V YG      RD+ I V A+GY DGYP +             
Sbjct: 234 MTVTTRLIAVRQHTANQPVGYGETWYAKRDTKIGVIAMGYGDGYPRSA-----------P 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   FI G  VPI+G+++MDM   D+      +VGD ++++G ++ ++ VA   GT  Y
Sbjct: 283 AGTPVFINGRQVPIVGRVSMDMITVDLGPDAMDKVGDSVEMWGKNLPVETVAKHIGTIPY 342

Query: 356 DLLVRIGTRYAKFY 369
           +L +++  R A+ Y
Sbjct: 343 ELTIKLTNRVARHY 356


>gi|163845038|ref|YP_001622693.1| alanine racemase [Brucella suis ATCC 23445]
 gi|189027530|sp|A9WVT5|ALR_BRUSI RecName: Full=Alanine racemase
 gi|163675761|gb|ABY39871.1| alanine racemase [Brucella suis ATCC 23445]
          Length = 396

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 194/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG +       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTQAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 367 TIPYEILTALGNRYARVYV 385


>gi|300724710|ref|YP_003714035.1| alanine racemase [Xenorhabdus nematophila ATCC 19061]
 gi|297631252|emb|CBJ91947.1| alanine racemase 1, PLP-binding, biosynthetic [Xenorhabdus
           nematophila ATCC 19061]
          Length = 359

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 106/366 (28%), Positives = 179/366 (48%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             I+  AL++N   + A + +++  AVVK NAYG G  + A  + +     F V  + E 
Sbjct: 6   AVINRRALRHNLQQVRAQAPDSKVIAVVKANAYGHGLLETACTMED--ADCFGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     +  ++   ++  V+ S+ QL    +           ++
Sbjct: 64  LALRSGGLVKPILLLEGFFEAADLPVLVVNHIDTVVHSIEQLEALEQA-DLSHPIKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+ + EA  F         + Q   +ISH + AD+P+      Q+ERF   +
Sbjct: 123 LDTGMHRLGVRIDEAEAFYQRLSCCHNVEQPINLISHFSRADEPAVETTQQQIERFMAFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
           +   G E S+A+S G+LL    H    RPGI +YG +  ++K      +   +T ++ +I
Sbjct: 183 ADKSG-EKSIAASGGVLLWLQAHLDWVRPGIMMYGVSPMVDKTAADFNLIPAMTLKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +RK   GE V YGG     RD+ + V A+GY DGYP +              G   FI 
Sbjct: 242 AVRKHKVGESVGYGGTWSSERDTCLGVVAMGYGDGYPRSA-----------PTGMPVFIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              VPI+G+++MDM   D+  +   +VGD + ++G  + ++ +A  SG + Y+L+ ++ +
Sbjct: 291 DREVPIVGRVSMDMITVDLGPACQDKVGDEVILWGSALPVEKIAEHSGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|160944933|ref|ZP_02092160.1| hypothetical protein FAEPRAM212_02449 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444117|gb|EDP21121.1| hypothetical protein FAEPRAM212_02449 [Faecalibacterium prausnitzii
           M21/2]
          Length = 400

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 94/394 (23%), Positives = 160/394 (40%), Gaps = 35/394 (8%)

Query: 1   MHSNEF---LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M    F   +  +IDL AL+ N+  + A +G     AVVK ++YG G  + A      G 
Sbjct: 1   MQKQPFEKHVWAEIDLEALRYNFREVKARAGALPLCAVVKADSYGHGAVQCARVFAEEGA 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116
               V+ + E V+LR       I +L  + P     +   ++     S+ Q    S+   
Sbjct: 61  AWLAVSCLTEAVQLRKAGQTLPILILGHVQPAYAAALIQNDITVACYSLAQAHALSEAAV 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHN----SFNKKLGQLSLIISHLACADD--- 169
           + G      L+ DTG  R+G +L+   D        +      +++ +  H + ADD   
Sbjct: 121 AAGGRVHIHLKADTGMGRIGFALRTDFDAAIREMLEACALPGLEMTGLFQHFSVADDTAP 180

Query: 170 PSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNY------HFQLTRPGIS 218
            +    + Q   F       K            +S+G++L P++         + RPGI 
Sbjct: 181 ENVAYTAEQHALFVKAFHALKAAGREPALVHCDNSAGVMLHPDWPEGLPRERCMARPGII 240

Query: 219 LYGGTDKINKSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
           LYG            + V+T +  + +I++   G+  SYG +    + + +A    GYAD
Sbjct: 241 LYGYDPSDEVRFGRFKPVMTLKTVVSMIKEMQPGQCASYGRRFTAEKPTKVATLCTGYAD 300

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           GYP  LS             G   I G   P+LG++ MD  M D+TD   +   D   ++
Sbjct: 301 GYPRLLS----------CGKGVVEIHGKACPVLGRVCMDQMMVDVTDVPEVREDDEAILW 350

Query: 338 GPDI--KLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G  +    + +A  + T  Y++L  +  R  + Y
Sbjct: 351 GGTVSDTAETIARKTDTIPYEVLCGVSRRVPRVY 384


>gi|78049364|ref|YP_365539.1| alanine racemase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|123584116|sp|Q3BNX4|ALR_XANC5 RecName: Full=Alanine racemase
 gi|78037794|emb|CAJ25539.1| Alanine racemase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 365

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 172/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQASIDLEALRHNYRLARRL-GGSKALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V ++  Q+   ++  S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATQQQVRALAEFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG       +      + V+T  +
Sbjct: 178 ALTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTENTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRELPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGQICPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVSALAAQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRVPRIYV 355


>gi|239947144|ref|ZP_04698897.1| alanine racemase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921420|gb|EER21444.1| alanine racemase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 354

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 182/365 (49%), Gaps = 21/365 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L+A+KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   LEINLSAIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRKALGVDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGL+  E     +N    K   L  IISHLA ++   +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLTHDEIEQLINNRDLLKGLDLQYIISHLAISEKIDNSYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            ++  ++ASLA+S GI LG +YHF L RPG +LYG    +         V  +A II ++
Sbjct: 186 RYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPVMKNP------VNLKAPIIHLQ 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                  + Y       RDS+IA   +GYADGY    S             G+ FI G  
Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGYSCNFSNQ-----------GEVFINGCS 288

Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VPI+G+I+MD+   D+TD    ++  G   +I G     D VA   GT  Y++L  +G R
Sbjct: 289 VPIVGRISMDLINIDVTDLPPSDIFLGQEAEIIGNHCTPDKVASIIGTIGYEVLTSLGNR 348

Query: 365 YAKFY 369
           Y + Y
Sbjct: 349 YKRIY 353


>gi|229161081|ref|ZP_04289069.1| Alanine racemase [Bacillus cereus R309803]
 gi|228622440|gb|EEK79278.1| Alanine racemase [Bacillus cereus R309803]
          Length = 408

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ID+ A+K+N         N +    A VK N YG G  ++A +   AGV    V  V+
Sbjct: 28  VEIDVNAVKHNVKEFKKHVNNEQIAMMAAVKANGYGHGAVEVAKSAIEAGVNQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E ++LR       I +L        +     +++  +  +  L   +++           
Sbjct: 88  EAIELREAGITVPILILGYTSVAAAEYAIQYDVMMTVYRIEDLQGINEIAQHLQKKAHIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  I +H + AD+      ++Q   F   
Sbjct: 148 IKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTAKELGIHISYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHAVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  ++ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D+T ++ ++VGD +  +G      I ++++A   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVTKAMPVQVGDEVVFYGKQGEEEIAVEEIADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|315125720|ref|YP_004067723.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           sp. SM9913]
 gi|315014234|gb|ADT67572.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           sp. SM9913]
          Length = 359

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 175/367 (47%), Gaps = 21/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I+L AL +N   +   + N++  AV+K NAYG G  KIA  L       F V  ++E 
Sbjct: 6   AEINLQALAHNLAQVRQFAPNSKVMAVLKANAYGHGLVKIAQHL--NDADAFAVARIDEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     +  I+   N   +I    QL                L+
Sbjct: 64  LALRAGGLTKPIVLLEGFFHQDDLPILLANNFQTIIHDENQLRALENA-KLDAPISCWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLI 186
           ++TG +RLG++  +  DF          + ++ +++H + ADD +    + Q+  F +L+
Sbjct: 123 INTGMHRLGVAPTQLNDFYQRLQATDNAKDTINLMTHFSSADDVNDPKTAEQIALFDSLV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARII 243
              +     LA+S+GI+  P  H +  RPG+ +YG +  +N   K H ++ V+    ++I
Sbjct: 183 QGKQQAHC-LANSAGIIAWPAGHGEWVRPGLMMYGVSPMLNTSGKDHQLKPVMRLTTKVI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            IR   A + V YGG  +  + + +AV A+GY DGYP                G    I 
Sbjct: 242 AIRDVDAAQGVGYGGSWQSAQPTKLAVVAMGYGDGYPRHA-----------KHGTPVVIA 290

Query: 304 GYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           G    I G I+MDM   DI ++   I+VGD + ++GP++ ++++A  + T +Y+LL  I 
Sbjct: 291 GKRYGIAGNISMDMISVDIGENADGIKVGDEVVMWGPELPVEEIAQCADTISYELLCNIT 350

Query: 363 TRYAKFY 369
            R +  Y
Sbjct: 351 PRVSYEY 357


>gi|225686682|ref|YP_002734654.1| alanine racemase [Brucella melitensis ATCC 23457]
 gi|225642787|gb|ACO02700.1| alanine racemase [Brucella melitensis ATCC 23457]
          Length = 396

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 195/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVEMIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 367 TIPYEILTALGNRYARVYV 385


>gi|238764111|ref|ZP_04625065.1| Alanine racemase 1 [Yersinia kristensenii ATCC 33638]
 gi|238697648|gb|EEP90411.1| Alanine racemase 1 [Yersinia kristensenii ATCC 33638]
          Length = 359

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/366 (27%), Positives = 174/366 (47%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +R  AVVK NAYG G  + A  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  ++    +   + S+ QL       +        ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFAAEDLPVLVANRIETAVHSIEQLEALEAA-NLSAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F       + + Q   I+SH + AD+P       QL+ F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSACRNIIQPVNIMSHFSRADEPLVDTTRQQLDCFDTFA 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARII 243
           +   G + S+++S GILL P  H    RPGI LYG +           +   +  ++ +I
Sbjct: 183 ADKPGKQ-SISASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFDLLPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +              G   ++ 
Sbjct: 242 AVREHKAGEPVGYGGTWISERDTRLGVVAIGYGDGYPRSA-----------PSGTPMWLN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  V I+G+++MDM   D+      +VGD + ++G ++ ++ +A  +G + Y+L+ ++ +
Sbjct: 291 GREVGIVGRVSMDMISVDLGPEAIDKVGDEVLLWGAELPVEKIAARTGISAYELITKLTS 350

Query: 364 RYAKFY 369
           R A  Y
Sbjct: 351 RVAMEY 356


>gi|260587632|ref|ZP_05853545.1| alanine racemase [Blautia hansenii DSM 20583]
 gi|260541897|gb|EEX22466.1| alanine racemase [Blautia hansenii DSM 20583]
          Length = 382

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 161/385 (41%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58
           M     ++  I+L A+  N  +M + +  N +  AV+K + YG G   IA  +     + 
Sbjct: 1   MRIQSRIQAHINLDAIDYNLKNMYDYMGKNTQIIAVLKADGYGHGAVPIAKEIEAYSYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
              V +VEEG +LR    +  I +L   +      I   +  P +  +      SK    
Sbjct: 61  GIAVATVEEGRELRKAGIKKPILILGYTYEEDYDRIVKEDFQPTVFKLSMAEQLSKAAVK 120

Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    +++DTG  R+G   +++A+            +L  I +H A AD+       
Sbjct: 121 ANKTLKIHIKLDTGMTRIGYRHIEDAIPEIVEISKLPNIELEGIFTHFARADETDLAPAY 180

Query: 177 VQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            QLE+++  +   K  GI       ++S+ I+   + +F   R GI LYG          
Sbjct: 181 QQLEKYQEFLDALKRQGISIPVKHCSNSAAIIRMQDAYFDAVRAGIILYGMYPSNEVEKD 240

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +  ++ I  I++   G  +SYGG     + + +A   +GYADGY   LS    
Sbjct: 241 KILLKPAMELKSHIAYIKEVEPGVEISYGGTFTTEKVTRVATIPVGYADGYSRGLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G    ILGK+ MD  M D+T+    +  D + + G D    I ++
Sbjct: 298 --------KGSVLIRGKRAKILGKVCMDQFMVDVTEIPEAKELDEVTLLGKDGTDCITME 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++   SG  NY+    I  R  + Y
Sbjct: 350 ELGELSGRFNYEFACCISKRVPRVY 374


>gi|254700123|ref|ZP_05161951.1| Alr, alanine racemase [Brucella suis bv. 5 str. 513]
 gi|261750615|ref|ZP_05994324.1| alanine racemase [Brucella suis bv. 5 str. 513]
 gi|261740368|gb|EEY28294.1| alanine racemase [Brucella suis bv. 5 str. 513]
          Length = 399

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 194/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAAYAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|311279308|ref|YP_003941539.1| alanine racemase [Enterobacter cloacae SCF1]
 gi|308748503|gb|ADO48255.1| alanine racemase [Enterobacter cloacae SCF1]
          Length = 356

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 97/369 (26%), Positives = 164/369 (44%), Gaps = 24/369 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   +DL AL++N   +   +  +R  +VVK NAYG G ++I  AL       F + 
Sbjct: 2   SRPVVASLDLQALRHNLSVVRRAAPGSRVWSVVKANAYGHGIDRIWSALKE--TDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  + +L G    ++  +FD   L   + S  Q+             
Sbjct: 60  NLEEAILLRERGWKGPVLMLEGFFQAEDLALFDKYRLTTTVHSNWQIKALQNAR-LHAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLER 181
              ++V++G NRLG + Q                   ++SH A A+ P     ++ Q+E+
Sbjct: 119 DVYVKVNSGMNRLGFTPQRLHTAWQQLRALPNVGDMTLMSHFADAEKPDGIREAMVQIEQ 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
                +   G   SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T
Sbjct: 179 ----AAEGLGCPRSLSNSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANSGLKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II I+    G+ V YG   + T++  I + A GYADGYP                 
Sbjct: 235 LSSEIIGIQNLKPGDTVGYGRLYRATQEQRIGIVACGYADGYPR-----------IAPDN 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA   GT  Y+L
Sbjct: 284 TPVLVDGVRTGTVGRVSMDMLAVDLTPCPQAGIGTPVELWGNEIKIDDVASCCGTVGYEL 343

Query: 358 LVRIGTRYA 366
           +  +  R  
Sbjct: 344 MCALAPRVP 352


>gi|256262185|ref|ZP_05464717.1| alanine racemase [Brucella melitensis bv. 2 str. 63/9]
 gi|263091881|gb|EEZ16203.1| alanine racemase [Brucella melitensis bv. 2 str. 63/9]
 gi|326411074|gb|ADZ68138.1| Alr, alanine racemase [Brucella melitensis M28]
 gi|326554365|gb|ADZ89004.1| Alr, alanine racemase [Brucella melitensis M5-90]
          Length = 399

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 195/379 (51%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P + VN+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVEMIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|152987893|ref|YP_001351392.1| alanine racemase [Pseudomonas aeruginosa PA7]
 gi|150963051|gb|ABR85076.1| alanine racemase [Pseudomonas aeruginosa PA7]
          Length = 368

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 168/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL       F V  
Sbjct: 13  RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEAL-AGEADGFAVAC 70

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +  I +L G     E ++I   +   V+ +  QL    +  S      
Sbjct: 71  IEEALELRAAGIREPILLLEGFFEAAELELIVAHDFWCVVHAAWQLEAIERA-SLARLLT 129

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+G   ++                 +++SH + AD+        QL  F 
Sbjct: 130 VWLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTDEQLAAFA 189

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
                 +G E SL +S  +L  P       RPGI LYG T        +  ++ V+T E+
Sbjct: 190 AASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLES 248

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG +    R   I V A+GYADGYP                G   
Sbjct: 249 KVISVRELPAGEPVGYGARYSTERSQRIGVVAMGYADGYPRHA-----------PDGTLV 297

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           FI G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL  
Sbjct: 298 FIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCN 357

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 358 L-KRVPRVYS 366


>gi|290967925|ref|ZP_06559475.1| alanine racemase [Megasphaera genomosp. type_1 str. 28L]
 gi|290782064|gb|EFD94642.1| alanine racemase [Megasphaera genomosp. type_1 str. 28L]
          Length = 399

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 158/387 (40%), Gaps = 31/387 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDF 60
           +   +  +IDL A   N   +  L G  +    +VVK NAYG G  ++A      G    
Sbjct: 11  TKRPVWAQIDLDAAIANIRGIRRLVGP-QVCVTSVVKANAYGHGAIELAKVFLGHGADQV 69

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG- 119
            V  + E V+LR      RI +L      + + +    + P +        +S+      
Sbjct: 70  AVACLGEAVELRQGGITGRILILGHTDGHRAEELTAYGVEPTVFRYEDALRFSRAAQAQH 129

Query: 120 VSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVN 175
            +    + VDTG  R+G       +            QL  + +H A +D          
Sbjct: 130 RTVNIHIAVDTGMGRIGYEPNANGIREIQAIAALPGLQLEGVFTHFAVSDSNTPADRAYT 189

Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q + F   ++       + +     SSSG+L    +H  + RPGI  YG         
Sbjct: 190 QAQYQCFTKFLTALAEVGIRPVYTHCCSSSGLLSQTAFHQNMVRPGILQYGYHPSGTVAC 249

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            S   Q V++    I  ++    G+ +SYG   + T+++ IA   +GYADGYP  LS   
Sbjct: 250 TSFTPQPVMSLRCCITHVKWVHKGQYISYGRHFQATKETCIATIPVGYADGYPRLLSNR- 308

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      +  + G  VP +G I MD  M D+TD  ++++GD   +FG      + L
Sbjct: 309 ----------TEVLVHGRRVPQVGNICMDQCMIDVTDVPNVQIGDEAVLFGTQGEGSLPL 358

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
           +++A A GT ++++L  I  R  + Y 
Sbjct: 359 EELAAAIGTIDHEILCNINRRVPRVYV 385


>gi|148557977|ref|YP_001257844.1| alanine racemase [Brucella ovis ATCC 25840]
 gi|166919547|sp|A5VVI9|ALR_BRUO2 RecName: Full=Alanine racemase
 gi|148369262|gb|ABQ62134.1| alanine racemase [Brucella ovis ATCC 25840]
          Length = 396

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 193/379 (50%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+   AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLPLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 367 TIPYEILTALGNRYARVYV 385


>gi|172058812|ref|YP_001815272.1| alanine racemase [Exiguobacterium sibiricum 255-15]
 gi|171991333|gb|ACB62255.1| alanine racemase [Exiguobacterium sibiricum 255-15]
          Length = 357

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 153/369 (41%), Gaps = 19/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               ++ID  A+ +N   + A  G+    AVVK + YG G   +A      G     V  
Sbjct: 3   RPTWIEIDREAIAHNVREIKARIGHQTMMAVVKADGYGHGAVTVAEIALANGADLLAVAL 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +EE ++LR    QA I +L  + P    I  + ++   + S   L    + ++       
Sbjct: 63  LEEAIELREAGIQAPILMLETLLPEHAPIASNYDVAVPVFSADWLREAKQHLTDVDHLRL 122

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++VD+G  RLGL   E LD      +  + +L  I +H A AD+ +S +   Q   F  
Sbjct: 123 HIKVDSGMGRLGLQTPEELDAVLQELDSDVMELEGIYTHFATADELNSRLFDEQQTVFLH 182

Query: 185 LISHYKGIE-ASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAE 239
            +     I     A+S+G +       F + R GI+LYG              +   T +
Sbjct: 183 FVERVPDIRYIHAANSAGAIRLIGQDPFNVVRIGIALYGAMPSDEMIPYYEFLRPAFTLK 242

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R++ +++   G+ +SYG       D  I    IGYADG+     G              
Sbjct: 243 SRLMQVKQVEPGQTISYGATYTAPTDEWIGTVPIGYADGWSRKFQGYSL----------- 291

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + GY   I+G++ MD  M  +  +  +  G  + + G  + +D+ A   GT NY++L 
Sbjct: 292 -LVDGYPCEIVGRVCMDRLMIRLPRNYPV--GTEVTLIGQGVPIDEAAHWLGTINYEVLC 348

Query: 360 RIGTRYAKF 368
           +   R  + 
Sbjct: 349 QFSKRVPRI 357


>gi|253702117|ref|YP_003023306.1| alanine racemase [Geobacter sp. M21]
 gi|259710067|sp|C6E5Z6|ALR_GEOSM RecName: Full=Alanine racemase
 gi|251776967|gb|ACT19548.1| alanine racemase [Geobacter sp. M21]
          Length = 379

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/389 (29%), Positives = 179/389 (46%), Gaps = 32/389 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S   + ++IDL AL++N+  +           AVVK +AYG G + ++  L   GV  
Sbjct: 1   MDSRPTV-VEIDLAALRHNFSLVQKRVPEGCGLLAVVKADAYGHGFQYVSEELEKLGVDA 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLM 116
           F V  + EGV+LR+      + +L GI+PG+E+ +   N+   + S+     L   +  +
Sbjct: 60  FAVAFLAEGVQLRMSGITRPVLILGGIYPGEERRLIGLNISTALFSLEQAAALDQAALEI 119

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--- 173
            C       L+VDTG  RLG+   E  +F       K  +L  I SH A AD+       
Sbjct: 120 KCYRKAHIHLKVDTGMGRLGVPYHEVPEFLAKLKQFKNLELEGIFSHFASADELDPEGIA 179

Query: 174 VNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--I 226
              +Q ERF   +   +          +A+S+ IL     +  L RPGI LYG       
Sbjct: 180 FTRLQAERFNAAVEEARRQGYAPSYVHVANSAAILAQDLPYCNLARPGIILYGALPSGDF 239

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
               P Q V+  ++R+ +++    G  +SYG +   T  +LIA   +GYADGY  +L+  
Sbjct: 240 EGQVPSQPVMRLKSRVAMLKWVEPGTSISYGRRYVATERALIASVPVGYADGYCRSLTN- 298

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----I 341
                      G+  I+G    + G + MD  M D+T+   + VGD + + GPD     I
Sbjct: 299 ----------KGEALIRGQRAKVAGTVCMDWIMLDVTNVKGVAVGDDVTLLGPDPMGDCI 348

Query: 342 KLDDVALASGTTNYDLLVRI-GTRYAKFY 369
             +++A  +GT  Y++L  I   R  + Y
Sbjct: 349 SAEEMAEKAGTIPYEVLCGIATRRVRRVY 377


>gi|291614600|ref|YP_003524757.1| alanine racemase [Sideroxydans lithotrophicus ES-1]
 gi|291584712|gb|ADE12370.1| alanine racemase [Sideroxydans lithotrophicus ES-1]
          Length = 353

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 179/370 (48%), Gaps = 22/370 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  ++  IDL+AL+NN       + ++R  AV+K NAYG G  ++A AL     + F + 
Sbjct: 2   SRPIQAHIDLSALQNNLRVARR-TASSRIMAVIKANAYGHGLLRVAEALNE--AEGFALL 58

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            V + + LR    +  I +L G    +E  ++ +  L  VI S  QL           S 
Sbjct: 59  DVRDAIALREAGFRQTILLLEGFFDAEELPLLAEYELGSVIHSTRQLAMLDACPRRN-SL 117

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+++TG NRLG + ++              +   +++H + AD+P     + QLE F
Sbjct: 118 EVWLKINTGMNRLGFAPEQVPAAMEKLRKHPAVRDITLMTHFSHADEPEG--VAEQLELF 175

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAE 239
           + L + Y+ +  SLA+S+ +L  P+ H +  RPGI LYG +   + S     ++ V+T  
Sbjct: 176 KGLTAAYR-LPRSLANSAALLRYPSTHSEWVRPGIMLYGASPFADASAQQLGLRPVMTLT 234

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II +R+  AG+ V Y G  +  +   I   A GYADGYP                G  
Sbjct: 235 SEIISVRELKAGDRVGYAGLFRADKTMRIGTVACGYADGYPRHA-----------PTGTP 283

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     LG+++MDM   D+++    ++G  + ++G  + +++VA ++GT +Y+L+ 
Sbjct: 284 IQVNGQRTRTLGRVSMDMLSVDLSEIPDADIGSPVTLWGTGLSVEEVAKSAGTISYELMC 343

Query: 360 RIGTRYAKFY 369
            +  R    Y
Sbjct: 344 ALTARVPVKY 353


>gi|313905464|ref|ZP_07838828.1| alanine racemase [Eubacterium cellulosolvens 6]
 gi|313469648|gb|EFR64986.1| alanine racemase [Eubacterium cellulosolvens 6]
          Length = 380

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 170/386 (44%), Gaps = 33/386 (8%)

Query: 5   EFLR--LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           E+LR   ++ L A+++N        G   +  AVVK NAYG G  ++A  L    V  F 
Sbjct: 3   EYLRTYAEVSLAAIEHNIDEARKRIGSGTKLLAVVKANAYGHGAVRVARHLQEK-VDFFA 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGV 120
           V ++EEG++LR       I  L  I P + + +   ++ P I  +      S K  S G 
Sbjct: 62  VATLEEGLELREAGIHKPILDLGYISPAEYEDMILADIRPSIYHLEDAEILSRKAASLGR 121

Query: 121 SHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           S    + +DTG  R+G  + E   D           ++  + +HL+CAD         Q 
Sbjct: 122 SAKLHIALDTGMTRIGFQVTEGDADQIREISLMPNLEIEGMFTHLSCADMVDKTYCDGQF 181

Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPN---YHFQLTRPGISLYGGTDKINKSHP 231
           E++ T+++  +          + +S+ ++       + + + R GI+ YG          
Sbjct: 182 EKYDTMLAMLEERNVRIPIRHVCNSAAVMEFDIDEKHRYDMVRTGITNYGIYPSEEVKKE 241

Query: 232 MQ---TVVTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLD 287
                  +  +A +I +++   G  VSYG      +  + IA  +IGYADGYP  LS   
Sbjct: 242 NMNLIPALAWKAHVIHVKEVAPGIGVSYGATFVTQKPVTKIATVSIGYADGYPRALS--- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G+  I G   PILG++ MD  M D+++   + V D + + G D    I +
Sbjct: 299 --------SKGRVLIHGKTAPILGRVCMDQMMVDVSEIPDVAVEDVVTLVGRDGEECISI 350

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +++A  SG  NY++L  I  R  + Y
Sbjct: 351 EEIADPSGRFNYEMLCDISPRVRRVY 376


>gi|94500388|ref|ZP_01306920.1| alanine racemase [Oceanobacter sp. RED65]
 gi|94427423|gb|EAT12401.1| alanine racemase [Oceanobacter sp. RED65]
          Length = 365

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 174/374 (46%), Gaps = 21/374 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +  IDL AL++N+   ++L+  +++ AVVK NAYG G    A AL    V  F V 
Sbjct: 2   SRPTQAIIDLEALRSNYRLADSLAPQSQSIAVVKANAYGHGAVPCAKAL-EPIVPAFAVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--- 119
           S++E ++LR    +  I +L G    G+ +I  +     +I +   L F  +        
Sbjct: 61  SIDEAIELREGGIRKPILLLEGPFSFGEVQIASEHEFWLMIENHNHLAFIEQCEHKKLIC 120

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-SHLACADDPSSHVNSVQ 178
                 L++D+G +RLG    E         +  +    +++ +H A AD         Q
Sbjct: 121 KPLKCWLKMDSGMHRLGFMPFEIAAIYQKLKSTSIVHDEIVVATHFATADVEGDAFVKEQ 180

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---V 235
           ++ F   IS   G   SL +S+G++  P  H    RPG  LYG +      H  +T   V
Sbjct: 181 IDCFNEAISGL-GCLTSLCNSAGVMAWPQAHGSWNRPGFMLYGASPFELPQHNDKTLQSV 239

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++++I +R    GE V YG      RDS IA   +GY DGYP               
Sbjct: 240 MTLQSKVISVRNVKKGEAVGYGKTWIAQRDSRIATVTVGYGDGYPRHAKN---------- 289

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    +      + G+++MDM   D+TD  S+ +GD +  +G D+ +++VA  SGT  Y
Sbjct: 290 -GTPILVNNQRCKLAGRVSMDMITVDVTDVGSVNIGDDVICWGKDLPINEVAHYSGTIGY 348

Query: 356 DLLVRIGTRYAKFY 369
           +L+ R+  R ++ Y
Sbjct: 349 ELMTRMPLRPSRIY 362


>gi|23100681|ref|NP_694148.1| D-alanine racemase [Oceanobacillus iheyensis HTE831]
 gi|50897490|sp|Q8ELK1|ALR2_OCEIH RecName: Full=Alanine racemase 2
 gi|22778915|dbj|BAC15182.1| D-alanine racemase [Oceanobacillus iheyensis HTE831]
          Length = 392

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 164/376 (43%), Gaps = 27/376 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             ++ L A+ +N  +      +  +  AVVK + YG G  ++A     AG     V  ++
Sbjct: 10  WTEVSLDAIHHNVTAFKNHIDHHTKLMAVVKADGYGHGAVEVAQEALTAGADYLAVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHP 123
           E ++LR     A + VL   HP   K   +  +   + +     Q+   ++L+    +  
Sbjct: 70  EAIQLRDAGIDAPLLVLGYTHPDGLKTAIEQQITLTVFTKEDAEQVKIAAELLQ--KTAR 127

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NR+G++ +E       + +     L    +H A AD+       +Q  RF 
Sbjct: 128 IHLKIESGMNRIGIATKEEAVEIAKALHSSFVMLEGAFTHFADADNTDPTYTEMQFHRFN 187

Query: 184 TLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVT 237
            +ISH +           +++  +  P+ H  + R GI +YG   +  + +   ++  ++
Sbjct: 188 QIISHLRTHCHIPIVHCCNTAATIAYPDMHLDMVRVGIGIYGLYPETHLKELIDLKQAMS 247

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + + + I+       +SYG      R S IA   IGYADG+   LS             
Sbjct: 248 LKTKPVYIKTVDQDTAISYGLTFTTERKSTIATMPIGYADGFSRLLSNR----------- 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   +     PI+G+I MD +M D+TD  ++ + D I IFG      I +++VA   GT 
Sbjct: 297 GDVIVHAGRAPIVGRICMDQSMIDVTDVENVGLDDVITIFGEPTEGYIAMEEVANLMGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y+    IG R  + Y
Sbjct: 357 HYETACLIGKRVPRIY 372


>gi|328884469|emb|CCA57708.1| Alanine racemase [Streptomyces venezuelae ATCC 10712]
          Length = 382

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 95/384 (24%), Positives = 164/384 (42%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R +IDL AL+ N  ++ A  + + R  AVVK +AYG G  + A A  +AG       
Sbjct: 8   RRARAEIDLGALRANVRTLRARVAPHVRIMAVVKADAYGHGAVRCARAALDAGADWLGTA 67

Query: 64  SVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVS 121
           +  E + LR        +               +  L   +S +           + G  
Sbjct: 68  TPHEALALRAAGITDVPVMCWLWTPGDPWDQGIEAGLDMSVSGMWALEEVVRAARATGGV 127

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQ 178
               L+ DTG  R G    +  +    +   +   L +++ + SH ACAD+P     + Q
Sbjct: 128 ARVQLKADTGLGRNGCQPADWPELVGEALKAEAEGLVEVTGLWSHFACADEPHHPSIAAQ 187

Query: 179 LERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229
           L+ FR+++ + +          +A+S   L  P  HF L RPGI++YG +          
Sbjct: 188 LDVFRSMLDYAEKAGVRPEVRHIANSPATLTLPEAHFDLVRPGIAMYGVSPSPELGTSAE 247

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ +A + L+++  AG  VSYG       ++ + +  +GYADG P   SG    
Sbjct: 248 LGLRPVMSLKASVALVKRVPAGHGVSYGHHYVTDAETTLGLVPLGYADGVPRHASGR--- 304

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G   + G +  + G++ MD  + D+   +    G    +FGP    +   +D
Sbjct: 305 --------GPVLVDGTVRTVAGRVAMDQFVVDLGGDVPA-PGTEAVLFGPGDLGEPTAED 355

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A+A+ T  Y+++ RIG R  + Y
Sbjct: 356 WAVAADTIAYEIVTRIGARVPRVY 379


>gi|325661284|ref|ZP_08149911.1| alanine racemase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331084962|ref|ZP_08334049.1| alanine racemase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325472791|gb|EGC76002.1| alanine racemase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330408662|gb|EGG88127.1| alanine racemase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 388

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 164/386 (42%), Gaps = 27/386 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M +   +  KIDL A+  N   M   L       AV+K + YG G  ++A  L +   V 
Sbjct: 1   MKTYSRVYAKIDLDAVAWNMEQMKKNLKEGTEMVAVIKTDGYGHGAVQVASMLESYDYVW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
            + V +++E V LR    Q  I VL  I P Q   +    +   + +       S L   
Sbjct: 61  GYAVATLDEAVVLRAAEIQKPILVLGCIFPDQYWEMLKYEIRMNVYTKEMAEAISALAVE 120

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNS 176
            G      +++DTG  RLG S +E+               L  + +H A AD+       
Sbjct: 121 KGEQAYVHIKLDTGMARLGFSAEESSIEEIKEIAELPNLVLEGVFTHFAKADEEDKTFTM 180

Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
           +QLE+F  +    +           ++S+GI+      + L R GI++YG         +
Sbjct: 181 MQLEKFEWMTQRLEEEGVTFPYVHASNSAGIIDVRRADYNLVRAGIAIYGLYPSEEVDKE 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  ++ ++ I  ++   AG  VSYGG         IA   IGY DGYP +LS    
Sbjct: 241 KVQLKPALSLKSHIAFVKDIPAGTPVSYGGDFVSEHQMRIATIPIGYGDGYPRSLSDT-- 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G   PI+G+I MD  M D++D   ++ GD + + G D    + ++
Sbjct: 299 ---------GYVLIRGKKAPIIGRICMDQFMVDVSDIPEVKFGDKVTLIGRDQEEYLPVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370
            ++  SG  NY+ +  +G R  + Y 
Sbjct: 350 KLSELSGRFNYEFVCDLGKRIPRVYV 375


>gi|75676204|ref|YP_318625.1| alanine racemase region [Nitrobacter winogradskyi Nb-255]
 gi|74421074|gb|ABA05273.1| alanine racemase region [Nitrobacter winogradskyi Nb-255]
          Length = 395

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/365 (34%), Positives = 182/365 (49%), Gaps = 11/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  A V+K +AYG G   +A AL  AG + FFV +++E 
Sbjct: 29  LTVDLDAIVANWRKLEKTAVPAECAGVIKADAYGCGARPVARALSAAGCRTFFVATLDEA 88

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
             +R     A I+VL G            N  PVI  + +L  +       G +   A+ 
Sbjct: 89  RVVRAAASTADIYVLDGFFQNCGDAFATINCRPVIGDLNELAEWDVFCRRTGWAGGAAIH 148

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL+L EA            G ++L++SHLACA+     +N+ Q+  FR +  
Sbjct: 149 IDTGMNRLGLTLDEAQGILPRINAGDHG-VTLVMSHLACAESLHHPLNASQVAAFREIAR 207

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASLA+SSGI LG  Y F L RPG +LYG       ++PMQ V+  +ARII  R 
Sbjct: 208 QFSGVPASLANSSGIFLGAQYQFDLVRPGAALYGVNPTPEAANPMQPVIELKARIIQTRS 267

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R + +AV + GYADGY           S     G +  + G   
Sbjct: 268 IDRGESVGYGATWTARRPTRLAVVSAGYADGYFRA------GGSNDGTRGAEVVVAGTRC 321

Query: 308 PILGKITMDMTMFDITDSL---SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           P+ G+I+MD+   DITD      +  G    + G  I +D++A   GT  Y++L  +G R
Sbjct: 322 PVAGRISMDLLAVDITDLPAHAGVRRGHLATLIGEGITVDELAHHFGTIGYEVLTSLGGR 381

Query: 365 YAKFY 369
           Y + Y
Sbjct: 382 YHRIY 386


>gi|331084077|ref|ZP_08333184.1| alanine racemase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330402439|gb|EGG82009.1| alanine racemase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 382

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 161/385 (41%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58
           M     ++  I+L A+  N  +M + +  N +  AV+K + YG G   IA  +     + 
Sbjct: 1   MRIQSRIQAHINLDAIDYNLKNMYDYMGKNTQIIAVLKADGYGHGAVPIAKEIEAYSYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
              V +VEEG +LR    +  I +L   +      I   +  P +  +      SK    
Sbjct: 61  GIAVATVEEGRELRKAGIKKPILILGYTYEEDYDRIVKEDFQPTVFKLSMAEQLSKAAVK 120

Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    +++DTG  R+G   +++A+            +L  I +H A AD+       
Sbjct: 121 ANKTLKIHIKLDTGMTRIGYRHIEDAIPEIVEISKLPNIELEGIFTHFARADETDLAPAY 180

Query: 177 VQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            QLE+++  +   K  GI       ++S+ I+   + +F   R GI LYG          
Sbjct: 181 QQLEKYQEFLDALKRQGISIPVKHCSNSAAIIRMQDAYFDAVRAGIILYGMYPSNEVEKD 240

Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +  ++ I  I++   G  +SYGG     + + +A   +GYADGY   LS    
Sbjct: 241 KILLKPAMELKSHIAYIKEVEPGVEISYGGTFTTEKVTRVATIPVGYADGYSRGLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G    ILGK+ MD  M D+T+    E  D + + G D    I ++
Sbjct: 298 --------KGSVLIRGKRAKILGKVCMDQFMVDVTEIPEAEELDEVTLLGKDGTDCITME 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++   SG  NY+    I  R  + Y
Sbjct: 350 ELGELSGRFNYEFACCISKRVPRVY 374


>gi|197119823|ref|YP_002140250.1| alanine racemase [Geobacter bemidjiensis Bem]
 gi|254802364|sp|B5EBG2|ALR_GEOBB RecName: Full=Alanine racemase
 gi|197089183|gb|ACH40454.1| alanine racemase [Geobacter bemidjiensis Bem]
          Length = 379

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/389 (28%), Positives = 177/389 (45%), Gaps = 32/389 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S   + ++IDL AL++N+  +           AVVK +AYG G + ++  L   GV  
Sbjct: 1   MDSRPTV-VEIDLAALRHNFSLVQKRVPEGCGLLAVVKADAYGHGFQYVSEELEKLGVDA 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLM 116
           F V  + EGV+LR+      + +L GI+PG+E+     N+   + S+     L   +  +
Sbjct: 60  FAVAFLAEGVQLRMSGITRPVLILGGIYPGEERRCIGLNISTALFSLEQAAALDQAALEI 119

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--- 173
            C       L+VDTG  RLG+   E  +F       K  +L  I SH A AD+       
Sbjct: 120 KCYRKAHIHLKVDTGMGRLGVPYHEVPEFLAKLKQFKNLELEGIFSHFASADELDPEGIA 179

Query: 174 VNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--I 226
              +Q ERF   +   +          +A+S+ IL     +  L RPGI LYG       
Sbjct: 180 FTKLQAERFNAAVEEARRQGYAPTYVHVANSAAILTQDLPYCNLARPGIILYGALPSGDF 239

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
               P Q V+  ++R+ +++    G  +SYG +      +LIA   +GYADGY  +L+  
Sbjct: 240 EGQVPSQPVMRLKSRVAMLKWVEPGTSISYGRRYVAAERALIASVPVGYADGYCRSLTN- 298

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----I 341
                      G+  I+G    + G + MD  M D+T+   + VGD + + GPD     I
Sbjct: 299 ----------KGEALIRGQRAKVAGTVCMDWIMLDVTNVKGVAVGDDVTLLGPDPMGDCI 348

Query: 342 KLDDVALASGTTNYDLLVRI-GTRYAKFY 369
             +++A  +GT  Y++L  I   R  + Y
Sbjct: 349 SAEEMAEKAGTIPYEVLCGIATRRVRRVY 377


>gi|226326592|ref|ZP_03802110.1| hypothetical protein PROPEN_00442 [Proteus penneri ATCC 35198]
 gi|225205017|gb|EEG87371.1| hypothetical protein PROPEN_00442 [Proteus penneri ATCC 35198]
          Length = 363

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 176/368 (47%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N+  +   + ++   AVVK NAYG G  + A  L +     F V  + E 
Sbjct: 6   AVIDRRALRHNFQHVRDYAPHSHLIAVVKANAYGHGLLETAYTLMDN-ADCFGVARIGEA 64

Query: 69  VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G        I+   ++  V+ S  QL    +  +        ++
Sbjct: 65  LTLRSGGIVKPILLLEGFFDIADLPILVVNHIETVVHSQEQLEALEQA-NLDEPVKVWMK 123

Query: 128 VDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTL 185
           +DTG +RLG+  ++A  F    S  K + Q   I+SH + AD+P        Q+  F+  
Sbjct: 124 IDTGMHRLGIRPEDAQAFYLRLSACKNVQQPVNIVSHFSRADEPDVPEATQKQISLFQDF 183

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEAR 241
           I    G + S+++S+GIL  P  H+Q  RPGI  YG +   ++       +   +T +  
Sbjct: 184 IQDKAG-DKSISASAGILFWPQVHYQWVRPGIITYGISPTGDERTGKDFGLTPAMTLKTS 242

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +RK  AGE V YGG     +D+ + V AIGY DGYP +              G   +
Sbjct: 243 LIAVRKHKAGEPVGYGGTWVSEKDTYLGVIAIGYGDGYPRSA-----------PSGTPVW 291

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G  VPI+G+++MDM   D+   L   VGD   ++G  + ++++A  SG + Y+L+ ++
Sbjct: 292 INGRKVPIVGRVSMDMISVDLGTELIDSVGDEAILWGDVLPVEEIAKYSGISAYELITKL 351

Query: 362 GTRYAKFY 369
            +R    Y
Sbjct: 352 TSRVIMEY 359


>gi|261367671|ref|ZP_05980554.1| alanine racemase [Subdoligranulum variabile DSM 15176]
 gi|282570464|gb|EFB75999.1| alanine racemase [Subdoligranulum variabile DSM 15176]
          Length = 395

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 163/378 (43%), Gaps = 25/378 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             +IDL AL++N+  +    G     AVVK +AYG G   +A  L   G   F V+ + E
Sbjct: 11  WAEIDLDALRHNFAFIKRTIGGP-VCAVVKADAYGHGDIVVARVLQEEGAAAFAVSCLAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYAL 126
             +LR +     + +L    P +   +   ++     S        +  ++ GV     L
Sbjct: 70  AKRLRRHGITVPVLILGYADPSEASALAQEDIATACFSTEYAKALSAAAVAAGVQVKVHL 129

Query: 127 QVDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSS-HVNSVQL 179
           ++DTG  R+G +     Q  +       +     +  I  H A AD  +P +      Q 
Sbjct: 130 KIDTGMGRIGFAAQSDWQAVVRELEALCSLPGLSICGIFQHFAVADSLEPDAQTYTDNQY 189

Query: 180 ERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-Q 233
             FR ++   +           A+S+  L  P +   +TR GI LYG         P+ +
Sbjct: 190 TLFRKVVDQLQADGYDTGTVHCANSAAQLRHPEWRNDMTRAGIILYGLDPSDELHFPVLK 249

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T +  +  ++  L G+ VSYG          +A A +GYADGYP  LSG   +    
Sbjct: 250 PVMTLKCIVTFVKDLLPGQSVSYGRTFTAKAPMRVATACVGYADGYPRMLSGSQGQ---- 305

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--KLDDVALASG 351
               G   + G   P+LG++ MD T+ D+T+   + +GD + +FGP      D +A  + 
Sbjct: 306 ----GLMMVNGRPAPVLGRVCMDQTLLDVTNIPGVRMGDEVTVFGPGAPDTADTIARKTD 361

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y+++  I  R  + Y
Sbjct: 362 TISYEIVCGIARRVPRVY 379


>gi|290958110|ref|YP_003489292.1| alanine racemase [Streptomyces scabiei 87.22]
 gi|260647636|emb|CBG70741.1| putative alanine racemase [Streptomyces scabiei 87.22]
          Length = 386

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/382 (26%), Positives = 166/382 (43%), Gaps = 29/382 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R +IDL AL+ N  ++ A +  A   AVVK +AYG G  + A A   AG       + 
Sbjct: 13  RARAEIDLDALRANVRTLRARAAGAELMAVVKSDAYGHGAVRCARAAVEAGATWLGTATP 72

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           EE + LR      R+        G  +   + ++   +S +           + G+    
Sbjct: 73  EEALALRAAGLSGRLMCWLWAPGGPWREAVEADIDVAVSGLWALREVTDAARAAGLRARV 132

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G +  +  +    +   +   L +++ + SH ACAD+P       QL R
Sbjct: 133 QLKADTGLGRNGCAPGDWPELVTEALRAEAEGLVKVTGLWSHFACADEPGHPSIEAQLTR 192

Query: 182 FRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232
           FR +I+H +  G+      +A+S   L  P+  F L R GI++YG +            +
Sbjct: 193 FRDMIAHAEEQGVRPEVRHIANSPATLTLPDARFDLVRTGIAVYGVSPSPELGSAADLGL 252

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+   A + L++   AG  VSYG        + + +  +GYADG P   SG       
Sbjct: 253 RPVMRLSASLALVKHVPAGHGVSYGHHYVTPGATTLGLVPVGYADGVPRHASGT------ 306

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                G   + G    + G++ MD  + D+     +  GD + +FG     +   +D A 
Sbjct: 307 -----GPVLVGGKWRTVAGRVAMDQFVVDLGGDEPV-AGDEVVLFGAGDRGEPTAEDWAQ 360

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
           A+GT  Y+++ RIGTR  + Y 
Sbjct: 361 AAGTIAYEIVTRIGTRVPRVYV 382


>gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4]
 gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4]
          Length = 819

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L AL +N +     L    +   +VK  AYG G  ++A  L +       V   +E
Sbjct: 461 LEVNLNALIDNLNYFRAKLRPETKIMCMVKAFAYGSGAVEVARTLQHHRCDYLAVAVADE 520

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYA 125
           G +LR    +  I V+     G   +IFD  L P I S   L  +           +P  
Sbjct: 521 GAELRREGIRIPIVVMNP-EKGSFGMIFDNKLEPEIYSFRLLDAFIASAEKLGLTDYPIH 579

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++D+G +RLG   +   +      N+   ++  + SHL+ +D+         Q++ F  
Sbjct: 580 IKIDSGMHRLGFEPKNMEELLTRLKNQNQVKVRSVFSHLSGSDEAKFDSFTKQQIDTFTD 639

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                 G     I   + +S+GI     Y F + R GI  YG +   +    ++ V   +
Sbjct: 640 CADQLSGAFSHNIMRHILNSAGIERFSEYQFDMVRLGIGHYGISSLPD--VKLKQVCALK 697

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+   AGE V Y  +  +  D  IA+  IGYADG+   L             GG+
Sbjct: 698 TIILQIKTVKAGETVGYSRKGIVNEDKRIAIIPIGYADGFDRKLGN----------GGGE 747

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G + MD+ M D+T+      GD ++IFG ++ + +VA    T  Y++L 
Sbjct: 748 VLVNGKRAKVIGNVCMDLVMIDVTNV-EANEGDSVEIFGDNLTISEVAGWLKTIPYEVLT 806

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 807 SVSRRVKRVY 816


>gi|288941546|ref|YP_003443786.1| alanine racemase [Allochromatium vinosum DSM 180]
 gi|288896918|gb|ADC62754.1| alanine racemase [Allochromatium vinosum DSM 180]
          Length = 367

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 172/376 (45%), Gaps = 22/376 (5%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            S   LR +I L A+++N+    +L+  +R  AVVK NAYG G   +A  L +     F 
Sbjct: 3   RSARPLRARIHLDAIRHNYRRAKSLAPRSRALAVVKANAYGHGAIAVARTLADE-ADGFA 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           V  VEE ++LR    Q  + +L G+  P +  ++    L  V+    QL +         
Sbjct: 62  VACVEEALELRESGIQEPMLLLEGVFSPDEIALVERAGLAMVVHCREQLDWVLNA-HPSR 120

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                +++DTG +R+G SL E  +              + ++H A AD+      S Q+E
Sbjct: 121 RLDCWIKLDTGMHRVGFSLSEFAEVNARLAACPHVGERVAMTHFARADEIDHPYTSAQIE 180

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-------KSHPMQ 233
            F   ++  + I  SLA+S+ +   P  H   TRPGI LYG +            +  ++
Sbjct: 181 AFEQALNGAR-IGRSLANSAAVFAWPQAHGDWTRPGIMLYGVSPFAGTGSNANMDAGDLR 239

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T E+ +I +R   AGE V YGG+    R + + VAAIGYADGYP             
Sbjct: 240 PAMTLESALIAVRDLDAGEPVGYGGRFVCERPTRVGVAAIGYADGYPRHA---------- 289

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
              G    + G +  ++G+++MDM   D+T       GD ++++G  +    VA AS T 
Sbjct: 290 -RDGTPIAVGGRLTRLIGRVSMDMITLDLTGFDEARPGDPVELWGRTVPAGAVAEASDTI 348

Query: 354 NYDLLVRIGTRYAKFY 369
            Y L   IG R    Y
Sbjct: 349 AYQLFTGIGRRVPLMY 364


>gi|320547461|ref|ZP_08041747.1| alanine racemase [Streptococcus equinus ATCC 9812]
 gi|320447806|gb|EFW88563.1| alanine racemase [Streptococcus equinus ATCC 9812]
          Length = 368

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 172/378 (45%), Gaps = 27/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   R  IDL A+  N  ++ A +    +  AVVK NAYG G +K+A A+++  V  F V
Sbjct: 6   HRPTRALIDLGAICQNIEAVKANIPEGKKAFAVVKANAYGHGAKKVAQAVHHL-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++V+E ++LR    +  I +L  I P +  +  D ++   ++S   L    +        
Sbjct: 65  SNVDEALELREAGIEETILILGVIMPNEVALARDYDITLTVASQEWLDLAIEQDISLKGV 124

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G  R+G+ SL EA +   N   K    +  I +H A AD+      + QLE 
Sbjct: 125 KVHLKVDSGMGRIGVRSLDEAENLIAN-LKKAGASVEGIFTHFATADEADDTKFNEQLEF 183

Query: 182 FRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F  ++ +   K      ++S+  +      F + R GI +YG       I   +P++  +
Sbjct: 184 FTNIVDNLSDKPALVHASNSATSIWHSETIFNIVRLGIVMYGLNPSGTDIELPYPIKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+ ++ ++   AG  V YG      ++  IA   IGYADG+   L G           
Sbjct: 244 SLESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G +  I+G+++MD     + +     +G  + + G +    I   D+A   GT
Sbjct: 295 ---VLVNGQVCEIVGRVSMDQITIRLPEKFP--IGTKVTLIGQEGDKVISATDLAKKRGT 349

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY++L  +  R  +FY+
Sbjct: 350 INYEVLCLLSDRIPRFYS 367


>gi|309777766|ref|ZP_07672714.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914450|gb|EFP60242.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 382

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/391 (27%), Positives = 181/391 (46%), Gaps = 37/391 (9%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           SN    L+IDL+ + +N   +  L  +  +  A+VK N YG G  + A  +   G+  F 
Sbjct: 4   SNTRSWLEIDLSRISHNIKEVQKLLPSTSKIMAIVKANGYGHGDVECARVMEQQGIDFFG 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V+SV+EGV+LR +  Q+ I VL    P     + + +LI  + S+    +  KL + G  
Sbjct: 64  VSSVDEGVRLREHGIQSPILVLGYTPPVHFHYLHEASLIQTLVSLE---YAQKLNAYGRK 120

Query: 122 H----PYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSH- 173
           H        +VDTG +R+G+  QE    ++     ++     +  I SH + +D      
Sbjct: 121 HDIVIKAHAKVDTGMSRIGIVAQEHAYHIEDIKALYHMDHIAVCGIFSHFSVSDCLDEEN 180

Query: 174 --VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD-- 224
                 Q+  F  +++  +  GI+     L +S GIL  PN  +   RPG+   G T   
Sbjct: 181 CRFTDHQIALFDRVLADLRAAGIDPGTTHLQNSYGILNYPNLKYDYVRPGLLWMGVTSDD 240

Query: 225 --KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             +I  +   Q ++  +A + L+++   G  VSYG   K    + +A  A+GYADG+P +
Sbjct: 241 AVEIRTAPQFQPIMEWKANVSLVKEIQPGVTVSYGRHFKAKECTRVATLAVGYADGFPRS 300

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
           +S            G    + G  VPI+G I MD  M DIT   +++ GD   + G D  
Sbjct: 301 VSN----------KGACVLLHGKRVPIIGNICMDQMMVDITGLDAVQEGDVATLIGSDGE 350

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             + +D+++  + T N + L  I  R  + Y
Sbjct: 351 ETLPVDELSRLAKTINNETLCWISQRVPRIY 381


>gi|152989346|ref|YP_001350978.1| biosynthetic alanine racemase [Pseudomonas aeruginosa PA7]
 gi|150964504|gb|ABR86529.1| alanine racemase [Pseudomonas aeruginosa PA7]
          Length = 358

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 171/370 (46%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+++N++     +   +  AVVK NAYG G  ++  AL++     F V  
Sbjct: 2   RPLVATVDLSAIRHNYNLAKRCAPQRQAFAVVKANAYGHGAREVVTALHDE-ADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R     ARI +L G     E  +     L  VI  + Q   +           
Sbjct: 61  LEEAAEVRALHADARILLLEGCFEASEYALAGQLRLDLVIQGLEQGEAFLAA-GLDTPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +     N    +   +ISH ACAD+ +  +   Q+E F 
Sbjct: 120 VWLKLDSGMHRLGFDPAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQVECFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L+      + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A
Sbjct: 180 GLLD-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGATPFADLSAAELGLKPAMSLTA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +R+  AGE V YG      R + I   + GYADGYP            +   G   
Sbjct: 239 RLISVREVAAGESVGYGAGWVAERPTRIGTVSCGYADGYPR-----------NAPAGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    + G+++MDM   D+     + VGD ++++G  + +D+VA A G+  Y+LL +
Sbjct: 288 LVGGRRTRLAGRVSMDMLTVDLGGLPDVRVGDPVELWGAQLAVDEVACACGSIGYELLSK 347

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 348 VTARVPRRYA 357


>gi|238922140|ref|YP_002935654.1| alanine racemase [Eubacterium eligens ATCC 27750]
 gi|238873812|gb|ACR73520.1| alanine racemase [Eubacterium eligens ATCC 27750]
          Length = 389

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 165/386 (42%), Gaps = 29/386 (7%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M S       +ID+ AL +N+ ++    G N +   VVK +AYG G  +++  L  +G  
Sbjct: 1   MDSTLRRTWAEIDMDALAHNYETLRKRIGENVKFLGVVKADAYGHGSVQVSRLLQESGAD 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMS 117
              V+S++E V+LR       + +L      +   +   N+   ++     L +  + + 
Sbjct: 61  YLAVSSIDEAVELRHNGITMPVLILGHTPKEEVSELIKNNITQAVTCRAKALEYSEEAVK 120

Query: 118 CGVSHPYALQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
           CG +    ++VDTG +RLG        +  ++               I +H A +D+   
Sbjct: 121 CGGTLKIHIKVDTGMSRLGYLCDGDYFESGVEGICEGCTLPGLDAEGIFTHFAVSDEFGE 180

Query: 173 H---VNSVQLERFRTLISHYKGIE------ASLASSSGILLGPNYHFQLTRPGISLYGGT 223
                   Q E F ++I   +            A++  +   P     + RPG+ LYG  
Sbjct: 181 EYESYTKHQFELFTSVIDEVEKKLGKKFKIRHCANTGAVARYPETWLDMVRPGLLLYGYG 240

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           D   +   ++ V++ +  +  I+   AG  +SYGG  K  R + + V   GYADGY   L
Sbjct: 241 DFAQE-LGLKPVMSLKTTVSTIKTYPAGTAISYGGIYKTDRKTRMGVVPYGYADGYFRCL 299

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
           S      +                P  GKI MDM M D+TD ++++VG  ++IFG    +
Sbjct: 300 SNRYELMTEEGP-----------APQRGKICMDMCMIDLTDKMNVDVGSEVEIFGKANPI 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + +A  +GT  Y+L   +  R  + Y
Sbjct: 349 EHMAQLAGTIPYELTCAVSKRVPRMY 374


>gi|317127074|ref|YP_004093356.1| alanine racemase [Bacillus cellulosilyticus DSM 2522]
 gi|315472022|gb|ADU28625.1| alanine racemase [Bacillus cellulosilyticus DSM 2522]
          Length = 381

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 96/390 (24%), Positives = 168/390 (43%), Gaps = 36/390 (9%)

Query: 1   MHS-NEFLR---LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           M+S N F R   +++DL A++ N  ++   L  +    A VK N YG     +A A   A
Sbjct: 1   MNSTNHFYRNTWVEVDLNAIRENVKNLKNHLPSHVHIMAAVKANGYGHSSVPVAEAALQA 60

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           G     V  ++E ++LR    +A I VL  + P    +  + ++   +     +   +K+
Sbjct: 61  GATYLGVALLDEAIELRENGIKAPILVLGYVSPKYVNVAAEYDIRLTVFQSEWVEEAAKV 120

Query: 116 MSCGVSHPY--ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
           +           +++DTG  RLG+   +E            L  +  + +H A AD+  +
Sbjct: 121 LEADNKGKIACHVKIDTGMGRLGIRTKEEGNALIVKLKKYSLFTIEGLFTHYATADELDT 180

Query: 173 HVNSVQLERFRTLISHYKG------IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
               +Q +RF+ +IS ++             +S+  L   + ++ L R GIS+YG +   
Sbjct: 181 SYLELQQQRFKDMISWFEATWGAEVPMKHCGNSATALRFSSEYYNLVRYGISMYGLSPSE 240

Query: 227 N----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                   P++   +  + I  I+KA  G+ +SYG   K   +  I    IGYADG+   
Sbjct: 241 EIKELLPFPLKQAFSLYSEITHIKKAEKGDGISYGATYKSPGEEWIGTIPIGYADGWIRA 300

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
                          G+  + G  VPI+G+I MD  M  +     +++G  + I G    
Sbjct: 301 ------------NATGEVLVNGERVPIVGRICMDQMMVAL--KQPVQIGTKVTIIGKQGN 346

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKF 368
             I +D+VA    T NY++   IG+R  + 
Sbjct: 347 SFITIDEVANRLNTINYEIPCTIGSRVPRI 376


>gi|238924324|ref|YP_002937840.1| alanine racemase [Eubacterium rectale ATCC 33656]
 gi|238875999|gb|ACR75706.1| alanine racemase [Eubacterium rectale ATCC 33656]
          Length = 376

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 171/385 (44%), Gaps = 28/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58
           M  N  +R  IDL A+  N  SM N L      AAVVK + YG G E ++  L     + 
Sbjct: 1   MAINR-IRADIDLDAILYNMESMHNKLKPGTMMAAVVKADGYGHGAEAVSEVLEPLPYLW 59

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
            + V +  E ++L     +  I +L    P Q + I D ++ P + +       S++  +
Sbjct: 60  GYAVATSNEAMELIAAGRKKPILILGLSFPEQFEEIVDNDVRPAVCTYETAKELSRIAVA 119

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    +++DTG  R+G  + +E+ D            +  I +H A AD+ S     
Sbjct: 120 KNKTCKIHIKIDTGMCRIGFQVTEESADIIAQIAKLPNIMIEGIFTHFARADELSKEPAF 179

Query: 177 VQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229
            Q + F+ +I+    +G+E      ++S+GI+  P  +  + R GI+LYG          
Sbjct: 180 EQFDLFKRMIALVEARGVEIPIKHCSNSAGIVEIPECNMDMVRAGITLYGLWPSEEVDKS 239

Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V++  +R+  +++   G  +SYGG   +     IA   +GY DGY   LS    
Sbjct: 240 KISLKPVMSLHSRVAYVKELEPGRHISYGGTFTVEHPMRIATVPVGYGDGYSRGLSN--- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   IKG   PI G++ MD  M D+TD   +++GD + + G D    I ++
Sbjct: 297 --------KGWVLIKGKKAPICGRVCMDQFMVDVTDIPDVKIGDAVTLLGKDGDETITME 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            +   SG  NY+    I  R  + Y
Sbjct: 349 QLGELSGRFNYEFACLITPRVPRIY 373


>gi|73541623|ref|YP_296143.1| alanine racemase [Ralstonia eutropha JMP134]
 gi|72119036|gb|AAZ61299.1| Alanine racemase region [Ralstonia eutropha JMP134]
          Length = 373

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 158/367 (43%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+ NN   +   +  +R  AV+K NAYG G  ++   L   G   F +  
Sbjct: 3   RPIHAVIHQPAIANNLEVVRRHAPGSRVWAVIKANAYGHGIRRVFAGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E V+LR    Q  I +L G   P    ++    L   +    QL         G    
Sbjct: 61  LNEAVQLRDLGWQGPILLLEGFFQPQDVPLLEQYRLTTAVHCDEQLRMLESARPKG-PLA 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NRLG    +       +         + ++H + AD P     + Q+E F 
Sbjct: 120 IQLKLNTGMNRLGFHPSQYRTAWERARAMPCVGSIVHMTHFSDADTPRGI--AHQIEAFD 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
              ++  G EASL++S+ +L  P  H    RPG+ LYG +    ++      +Q  ++  
Sbjct: 178 KATANLPG-EASLSNSAAVLWHPEAHRAWVRPGVILYGASPTGREADIAGVGLQPAMSLH 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG      R   I V A GYADGYP   +G     +P       
Sbjct: 237 SELIAVQDLQPGDTVGYGSMFTADRPMRIGVVACGYADGYPRHATGWGEHRAP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+       +G  + ++G  + +DDVA ASGT  Y+L+ 
Sbjct: 290 VLVDGVRTQLVGRVSMDMLCVDLGPCPKARIGSPVTLWGQGLPIDDVAQASGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALAPRVP 356


>gi|315925455|ref|ZP_07921666.1| alanine racemase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621356|gb|EFV01326.1| alanine racemase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 426

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/378 (26%), Positives = 163/378 (43%), Gaps = 22/378 (5%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++     +I+L  + +N H++       A   AVVK +AYG G E +   L + GV    
Sbjct: 39  AHRPTWAEINLDNVVSNLHAIQKHVGPGAALIAVVKADAYGHGIELV-QTLQDEGVGRMA 97

Query: 62  VTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           V  ++E + LR        I +L      Q   I + ++ P + S+      S+      
Sbjct: 98  VAFLDEAIALRQKGIDRCDIMLLGVTLTDQIPEIVEWDIEPTVDSLDFARALSEYAVKND 157

Query: 121 SHPYALQVD-TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                     TG  R+G    EA +            L  + +H A AD+       +Q+
Sbjct: 158 VVVNVHVKVDTGMGRIGFRWDEAAEAIAAMAELPGINLLGLFTHFATADEADKTFTQLQM 217

Query: 180 ERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231
           +R+  +      +GI+     + +S+ I+      F   RPGI LYG            P
Sbjct: 218 KRYLDVTRALNARGIQIPLKHVENSASIIDFGKTAFNAVRPGIILYGLYPSDEVKKAQLP 277

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T + RII ++   AG+   YG +     D  IA  A+GYADGY   LSG      
Sbjct: 278 LRPVMTFKTRIIHLKTVHAGDSCGYGRRFIAEGDRKIATLAVGYADGYTRMLSG------ 331

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                G + +I G   P++G I MD  M D+TD     + D +++FG  + ++++A   G
Sbjct: 332 ----KGAEVWIHGRRAPVVGNICMDQCMVDVTDVPEAALFDEVELFGEHLPVEELAEKLG 387

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+L+  +  R  + Y
Sbjct: 388 TINYELVCMVNKRVPRLY 405


>gi|291550435|emb|CBL26697.1| alanine racemase [Ruminococcus torques L2-14]
          Length = 388

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 162/385 (42%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M     +  +I+L A+  N   M    G   R  AV+K +AYG G   +A        + 
Sbjct: 1   MKQYNRVCARINLDAIAYNMEQMKNRIGQEGRLIAVIKTDAYGHGAVPLAEMFEETPYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMS 117
            + V  + E   LR +  +  I +L  + P + + + +  +   + +           + 
Sbjct: 61  GYAVACMGEARTLRAHGIKKPILILGCVFPDEYEEMVEKEIRAAVYTEEMAKGMAEAAVR 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +    +++DTG  R+G  + +E+++           ++  + +H A AD+       
Sbjct: 121 SGKTAFLHIKIDTGMGRIGFKVSKESVETISRISKLPNIKMEGMFTHFAKADEFDKSYTF 180

Query: 177 VQLERFRTLISHYK--GIEAS---LASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            Q E+F  +    +  G++ S     +S+GI+  P+    L R GIS+YG          
Sbjct: 181 AQHEKFLWMKEQLEKNGVQISYYDCDNSAGIIDFPDMKHDLARAGISIYGMYPSDEVKKD 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++  +   + I  ++    G  +SYGG     +   IA   +GY DGYP +LS    
Sbjct: 241 AVDLKPALELISHISFVKDVEKGTSISYGGTFVAPKKMRIATIPVGYGDGYPRSLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G    I+G++ MD  M D+T+    +  D + + G D    I+++
Sbjct: 298 --------KGYVLIHGKRADIVGRVCMDQFMVDVTEIPEAKFMDPVTLVGKDKDAVIRVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           D++  SG  NY+ +  +  R  + Y
Sbjct: 350 DLSDLSGRFNYEFVCDLSKRVPREY 374


>gi|171779289|ref|ZP_02920260.1| hypothetical protein STRINF_01137 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282345|gb|EDT47772.1| hypothetical protein STRINF_01137 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 368

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 171/377 (45%), Gaps = 25/377 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   R  IDL A+ +N  ++ A +    +  AVVK NAYG G +K+A A+++  V  F V
Sbjct: 6   HRPTRALIDLGAICDNIETVKANIPEGKKAFAVVKANAYGHGAKKVAQAVHHL-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++V+E ++LR    +  I +L  I P +  +  D ++   ++S   L   ++        
Sbjct: 65  SNVDEALELREAGIEETILILGVIMPNEVALARDYDITLTVASQEWLDLANEQDISLKGV 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+VD+G  R+G+   E  +    +  K    +  I +H A AD+  +   + QL  F
Sbjct: 125 NVHLKVDSGMGRIGVRSLEEAESLMANLKKAGANVEGIFTHFATADEADNTKFNEQLAFF 184

Query: 183 RTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++++   K      ++S+  +      F + R GI +YG       I   +P++  ++
Sbjct: 185 TNIVNNLSEKPALVHASNSATSIWHSETIFNIVRLGIVMYGLNPSGTDIALPYPIKPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  V YG      ++  IA   IGYADG+   L G            
Sbjct: 245 LESALVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G    I+G+++MD     + +     +G  + + G +    I   D+A   GT 
Sbjct: 295 --VLVNGQFCEIVGRVSMDQITIRLPEKFP--IGTKVTLIGQEGDKAISATDLAQKCGTI 350

Query: 354 NYDLLVRIGTRYAKFYT 370
           NY++L  +  R  +FY+
Sbjct: 351 NYEVLCLLSDRIPRFYS 367


>gi|188993228|ref|YP_001905238.1| alanine racemase [Xanthomonas campestris pv. campestris str. B100]
 gi|167734988|emb|CAP53200.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 360

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 172/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G  +  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQALIDLDALRHNYRLARQLGGG-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E  +I + +L  V+++  Q+   ++  S      
Sbjct: 60  IEEALELRQAGVRAPILLLEGFFEHDELALIAEHDLWTVVATPWQVRALAEFRS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++      +          ++++HLA AD+        Q   F 
Sbjct: 119 VWLKLDSGMHRLGLSPEDFRAAWLHLRGLPQIDSLVLMTHLAQADELECSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L       E SL +S G+L  P      +RPG+ LYG       S     ++ V+T  +
Sbjct: 178 ALTCGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQPSELTAQLRPVMTVRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R   AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+T+    +VG  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGQVCPLIGRVSMDMLTVDLTEHPHADVGTPVQLWGDAPQVSTLAAQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-KRVPRHYS 355


>gi|301051975|ref|YP_003790186.1| alanine racemase [Bacillus anthracis CI]
 gi|300374144|gb|ADK03048.1| alanine racemase [Bacillus cereus biovar anthracis str. CI]
          Length = 389

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 158/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIQLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|325929301|ref|ZP_08190432.1| alanine racemase [Xanthomonas perforans 91-118]
 gi|325929312|ref|ZP_08190443.1| alanine racemase [Xanthomonas perforans 91-118]
 gi|325540323|gb|EGD11934.1| alanine racemase [Xanthomonas perforans 91-118]
 gi|325540334|gb|EGD11945.1| alanine racemase [Xanthomonas perforans 91-118]
          Length = 365

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 171/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQASIDLEALRHNYRLARRL-GGSKALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V ++  Q+   ++  S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG       +      + V+T  +
Sbjct: 178 ALTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTENTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRELPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
              G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LADGQICPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVSALAAQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRVPRIYV 355


>gi|21244412|ref|NP_643994.1| alanine racemase [Xanthomonas axonopodis pv. citri str. 306]
 gi|23813646|sp|Q8PGD0|ALR_XANAC RecName: Full=Alanine racemase
 gi|21110074|gb|AAM38530.1| alanine racemase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 366

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 171/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V ++  Q+   ++  S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKLDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG       +      + V+T  +
Sbjct: 178 ALTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRELPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P+ G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGQVCPLAGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVGALAAQCNVSAYQLLCG 346

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 347 L-KRVPRVY 354


>gi|313899530|ref|ZP_07833039.1| alanine racemase [Clostridium sp. HGF2]
 gi|312955637|gb|EFR37296.1| alanine racemase [Clostridium sp. HGF2]
          Length = 388

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/390 (26%), Positives = 173/390 (44%), Gaps = 31/390 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           + SN    L+IDL  + +N   +  L  +  +  A+VK N YG G  + +  +   G+  
Sbjct: 8   LKSNTRSWLEIDLNRISHNIKEVQKLIPSTSKIMAIVKANGYGHGDVECSRMMEQQGIDF 67

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           F V+SV+EGV+LR    Q+ I VL    P     + + +LI  + S       +      
Sbjct: 68  FGVSSVDEGVRLRENGIQSPILVLGYTPPVHFHYLNEASLIQTLVSKEYAEKLNAYAKEQ 127

Query: 119 GVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSH-- 173
            V      +VDTG +R+G+  Q+    ++     +  +   +  I SH + +D       
Sbjct: 128 NVVVKAHAKVDTGMSRIGIIAQDHAYHIEDIKALYRLEYLDVCGIFSHFSVSDCLDEENC 187

Query: 174 -VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225
              + Q+  F  +++  +  GI+     L +S GIL  PN H+   RPG+   G T    
Sbjct: 188 AFTNHQIALFERVLADLRAEGIDPGTTHLQNSYGILNYPNLHYDYVRPGLLWMGVTSDDA 247

Query: 226 --INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
             I  +   Q ++  +A + L++    G  VSYG   K    + +A  A+GYADG+P ++
Sbjct: 248 LAIRTAPQFQPIMEWKANVSLVKDIQPGVTVSYGRHFKAEVCTRVATLAVGYADGFPRSV 307

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
           S            G    + G  VPI+G I MD  M DIT    +  GD   + G D   
Sbjct: 308 SNQ----------GACVLLHGRRVPIIGNICMDQMMVDITGLDGVSEGDVATLIGCDGDE 357

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            + +D+++  + T N + L  I  R  + Y
Sbjct: 358 VLSVDELSRLAHTINNETLCWISQRVPRIY 387


>gi|291484362|dbj|BAI85437.1| hypothetical protein BSNT_02911 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 395

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 171/384 (44%), Gaps = 30/384 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + ++++L A+K N  ++     + ++  AVVK N YG G  ++A      G  +  V 
Sbjct: 7   REVWIEVNLDAVKKNLRAIRRHIPHKSKIMAVVKANGYGHGSIEVARHALEHGASELAVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GV 120
           SVEEG+ LR     A I VL        K     N+      V  +   ++++       
Sbjct: 67  SVEEGIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASAN 126

Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+   +E L+        K  + + I +H + AD+P + +  +Q 
Sbjct: 127 RLAIHINVDTGMGRLGVRTKEELLEVVKALKASKFLRWTGIFTHFSTADEPDTTLTKLQH 186

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230
           E+F + +S  K  GIE     + +++  +  P +   + R GI LYG             
Sbjct: 187 EKFISFLSFLKKQGIELPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLNLV 246

Query: 231 PMQTVVTAEARIILIRKAL-AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            ++  ++ +ARI  ++        VSYG       + +IA   IGYADGY   LS     
Sbjct: 247 KLEPALSLKARIAYVKTMRTEPRTVSYGATYVAEPNEVIATLPIGYADGYSRALSNR--- 303

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  VP+ G++TMDM M  + ++   + GD + I+G     +I +D+
Sbjct: 304 --------GFVLHRGKRVPVAGRVTMDMIMVSLGENGEGKQGDEVVIYGKQKGAEISVDE 355

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA    T NY+++  +  R  +FY
Sbjct: 356 VAEMLNTINYEVVSTLSRRIPRFY 379


>gi|300782672|ref|YP_003762963.1| alanine racemase [Amycolatopsis mediterranei U32]
 gi|299792186|gb|ADJ42561.1| alanine racemase [Amycolatopsis mediterranei U32]
          Length = 371

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/374 (27%), Positives = 168/374 (44%), Gaps = 22/374 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R+ IDL A+++N   + A +  +   AVVK +AYG G   +A A   AG       S
Sbjct: 6   PRARVDIDLDAIRHNLTLLGARAPGSEVMAVVKADAYGHGALPVARAAVEAGATWLGTCS 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + E + LR     AR+F              + ++    SS+ +L   S     G     
Sbjct: 66  LGEALALREAGITARLFSWLDTPDVDFAPGVENDIDLAASSLGELRRISAAAKPGTPARV 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++DTG +R G       +    +  +   ++  I SHLACAD+P      +Q +RF  
Sbjct: 126 HLKIDTGLSRNGCPPAAWAELVEAAAAEPRVEVVAIWSHLACADEPEHPSIDLQAKRFAE 185

Query: 185 L--ISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
               +   G++    LA+S+ +L  P+ HF + RPGI++YG          ++  +T  +
Sbjct: 186 AYDTARAAGLDPMRHLANSAALLTRPDLHFDIVRPGIAMYGLNPVPQ-PEDLRPAMTFRS 244

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            + L+++  AGE VSYG     +R++ +A+   GYADG P +LSG               
Sbjct: 245 AVALVKRIEAGESVSYGHTWTASRETNLALVPAGYADGVPRSLSGRMD-----------V 293

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYD 356
            + G   P+ G++ MD  + D  D     VGD + +FG     +    + A   GT +Y+
Sbjct: 294 LLGGQRRPVAGRVCMDQLVVDCGD-YEPSVGDEVVLFGAGAHGEPTAREWADKLGTIDYE 352

Query: 357 LLVRI-GTRYAKFY 369
           ++  +   R  + Y
Sbjct: 353 IVTSMYRPRVRRRY 366


>gi|295702426|ref|YP_003595501.1| alanine racemase [Bacillus megaterium DSM 319]
 gi|294800085|gb|ADF37151.1| alanine racemase [Bacillus megaterium DSM 319]
          Length = 396

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 95/381 (24%), Positives = 159/381 (41%), Gaps = 29/381 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +ID+ A+  N + +  L   +    AVVK NAYG G +++A     AG     V 
Sbjct: 16  RETWAEIDVEAIFQNVNHVRELIPVHKTLMAVVKANAYGHGDKEVAEIALQAGADMLAVA 75

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E + LR    +  I VL  +     +   + ++     S   +   + ++       
Sbjct: 76  FLDEAIALRKKGIKESILVLGAVPTLHIQTALEWDVTVTAYSKAWIEEAASILGENSQLH 135

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERF 182
             L++DTG  RLG+  +E L  T        G  L  + +H A AD+ +S     Q   F
Sbjct: 136 MHLKIDTGMGRLGVRTKEELHETMKIIASHSGFVLDGVFTHFATADELNSSYFEEQYTFF 195

Query: 183 RTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233
             ++      ++K      A+S+ +L  P   F   R GIS+YG +           P++
Sbjct: 196 EEMVRIVKEYNFKPPMIHCANSAALLRRPKDIFNGVRLGISMYGLSPSEELKEVLPIPLK 255

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
              +  +RI+ ++K   G  +SYG   +   D  IA   +GYADG+   LS         
Sbjct: 256 QAFSLHSRIVHVKKVKKGSHISYGATYEAKEDEWIATIPVGYADGWIRKLSNF------- 308

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                +  + G  VPI+G+I MD  M  +      + G  +   G     +I +D+VA  
Sbjct: 309 -----EVLVDGVKVPIVGRICMDQLMIKLPKMY--KTGTKVTFIGKQKGAEITIDEVAKH 361

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
             T NY++   +  R  + YT
Sbjct: 362 LETINYEIPCMVAARVPRVYT 382


>gi|331002036|ref|ZP_08325556.1| alanine racemase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411832|gb|EGG91237.1| alanine racemase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 392

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/384 (27%), Positives = 167/384 (43%), Gaps = 27/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S      K+DL A+K+N       L  N + AAVVK + YG G   ++  + +  V  
Sbjct: 1   MDSYRRAYAKVDLDAIKHNLMITKQALKENMKLAAVVKADGYGHGSVPVSLHIKDI-VDF 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118
           F V ++EEG+ LR +     I +L  I     K     ++   + ++ Q      +    
Sbjct: 60  FCVATLEEGINLRYHGITKPILILACIPRSSYKESIVFDIRESVFTLEQAKKINDEAKEM 119

Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      + +DTG NR+G    +E+ D           ++  I +H   AD+        
Sbjct: 120 GKKMSIHIAIDTGMNRIGFKPTKESADIIKTINEMNNIEIEGIFTHFHSADEIDLTSAKR 179

Query: 178 QLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KS 229
           Q E F   +   +  GIE      ++S+ I+        + R GI++YG +       KS
Sbjct: 180 QEELFLEFLDMLRNMGIEPKITHASNSAAIVNNIGTQLDMVRCGITMYGVSPSNEVNLKS 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  ++  + I  I++  AGE VSYG   K  +D  IA  + GYADGYP  LS     
Sbjct: 240 FDYRPALSIYSTITYIKEIKAGECVSYGAIFKAEKDMNIATISFGYADGYPRDLSN---- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   I G    ILG+I MD T+ D+++   +E+GD + I G      I +++
Sbjct: 296 -------KGYVLIHGVKCRILGRICMDQTIVDVSNIPKVEIGDTVVILGESEDSKITVEE 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +   S T +Y+ +  I  R  + Y
Sbjct: 349 LTKDSNTFSYEFICGINKRVPRLY 372


>gi|21233076|ref|NP_638993.1| alanine racemase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770016|ref|YP_244778.1| alanine racemase [Xanthomonas campestris pv. campestris str. 8004]
 gi|23813644|sp|Q8P4R0|ALR_XANCP RecName: Full=Alanine racemase
 gi|81304032|sp|Q4UQB5|ALR_XANC8 RecName: Full=Alanine racemase
 gi|21114928|gb|AAM42917.1| alanine racemase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575348|gb|AAY50758.1| alanine racemase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 360

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 172/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G  +  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQALIDLDALRHNYRLARQLGGG-KALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E  +I + +L  V+++  Q+   ++  S      
Sbjct: 60  IEEALELRQAGVRAPILLLEGFFEHDELALIAEHDLWTVVATPWQVRALAEFRS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++      +          ++++HLA AD+        Q   F 
Sbjct: 119 VWLKLDSGMHRLGLSPEDFRAAWLHLRGLPQIDSLVLMTHLAQADELECSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L       E SL +S G+L  P      +RPG+ LYG       S     ++ V+T  +
Sbjct: 178 ALTCGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQPSELTAQLRPVMTVRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R   AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+T+    +VG  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGKVCPLIGRVSMDMLTVDLTEHPHADVGTPVQLWGDAPQVSTLAAQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 347 L-KRVPRHYS 355


>gi|229074289|ref|ZP_04207333.1| Alanine racemase [Bacillus cereus Rock4-18]
 gi|228708841|gb|EEL60970.1| Alanine racemase [Bacillus cereus Rock4-18]
          Length = 389

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEASFYRDTWVEVDLDAIYNNIKHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDINVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVDGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|16078827|ref|NP_389646.1| alanine racemase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309646|ref|ZP_03591493.1| hypothetical protein Bsubs1_09706 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313968|ref|ZP_03595773.1| hypothetical protein BsubsN3_09647 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318891|ref|ZP_03600185.1| hypothetical protein BsubsJ_09566 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323164|ref|ZP_03604458.1| hypothetical protein BsubsS_09682 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3913040|sp|P94494|ALR2_BACSU RecName: Full=Alanine racemase 2
 gi|1750128|gb|AAB41097.1| YncD [Bacillus subtilis]
 gi|2634148|emb|CAB13648.1| alanine racemase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 394

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 171/384 (44%), Gaps = 30/384 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + ++++L A+K N  ++     + ++  AVVK N YG G  ++A      G  +  V 
Sbjct: 6   REVWIEVNLDAVKKNLRAIRRHIPHKSKIMAVVKANGYGHGSIEVARHALEHGASELAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GV 120
           SVEEG+ LR     A I VL        K     N+      V  +   ++++       
Sbjct: 66  SVEEGIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASAN 125

Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+   +E L+        K  + + I +H + AD+P + +  +Q 
Sbjct: 126 RLAIHINVDTGMGRLGVRTKEELLEVVKALKASKFLRWTGIFTHFSTADEPDTTLTKLQH 185

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230
           E+F + +S  K  GIE     + +++  +  P +   + R GI LYG             
Sbjct: 186 EKFISFLSFLKKQGIELPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLNLV 245

Query: 231 PMQTVVTAEARIILIRKAL-AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            ++  ++ +ARI  ++        VSYG       + +IA   IGYADGY   LS     
Sbjct: 246 KLEPALSLKARIAYVKTMRTEPRTVSYGATYIAEPNEVIATLPIGYADGYSRALSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  VP+ G++TMDM M  + ++   + GD + I+G     +I +D+
Sbjct: 303 --------GFVLHRGKRVPVAGRVTMDMIMVSLGENGEGKQGDEVVIYGKQKGAEISVDE 354

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA    T NY+++  +  R  +FY
Sbjct: 355 VAEMLNTINYEVVSTLSRRIPRFY 378


>gi|23100604|ref|NP_694071.1| alanine racemase [Oceanobacillus iheyensis HTE831]
 gi|50897491|sp|Q8ELR9|ALR1_OCEIH RecName: Full=Alanine racemase 1
 gi|22778837|dbj|BAC15105.1| alanine racemase [Oceanobacillus iheyensis HTE831]
          Length = 376

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/383 (25%), Positives = 162/383 (42%), Gaps = 26/383 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           S     +++ L AL  N       L   +R  AVVK + YG G   IA     AG +   
Sbjct: 5   SYRDAWVEVSLDALTYNVRQFKNHLQEKSRLMAVVKADGYGHGAVPIARRSLEAGAEYLG 64

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGV 120
           V  ++E +++R     A I +L        +     +L   + S   L        S   
Sbjct: 65  VAFIDEALQIREAGILAPILLLGFTPSYAVREAVRHDLTLTVYSTETLEAIKDAARSLDK 124

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQL 179
                ++VD+G +R+GL   E +     S   +  ++  I +H A A +D S      Q 
Sbjct: 125 KAKIHIKVDSGMSRIGLRSSEEVISLMTSLQTEEIEVEGIFTHFADADNDESDAYTYKQF 184

Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPM 232
           E F+ ++   +            +S+  +  P+ H  + R GISLYG      + +   +
Sbjct: 185 ETFQGIMEALENEGYSIPIKHCCNSAATIAFPDMHMDMVRVGISLYGLYPGQHLKEILSL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q V++ +A+ +LI+     + +SYG   +    S IA   IGYADG+   LS +      
Sbjct: 245 QQVMSFKAKPVLIKDVPPHQPISYGLTYETKETSKIATLPIGYADGFSRLLSNV------ 298

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD----IKLDDVA 347
                G   + G   PI+G+I MD +M D+++    +   D + IFG +    I LD VA
Sbjct: 299 -----GHVTVHGTACPIVGRICMDQSMIDVSEVQTDVTKDDIVTIFGDENAGYIPLDVVA 353

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
               T +Y+ +  IG R  + Y 
Sbjct: 354 EQMQTIHYETVCLIGKRVPRHYV 376


>gi|288554966|ref|YP_003426901.1| alanine racemase [Bacillus pseudofirmus OF4]
 gi|190403006|gb|ACE78171.1| alanine racemase [Bacillus pseudofirmus]
 gi|288546126|gb|ADC50009.1| alanine racemase [Bacillus pseudofirmus OF4]
          Length = 369

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 166/382 (43%), Gaps = 29/382 (7%)

Query: 1   MHSNEF--LRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M ++ F     +I L ALK N  S  A   S   R  AVVK + YG G    A +  N G
Sbjct: 1   MKTSSFRNTYAQISLQALKENAASFKASLQSPACRLMAVVKGDGYGHGAVAAASSALNGG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKL 115
                V  ++E ++LR    +A I VL    P   +     N+   + S   +       
Sbjct: 61  ADYLGVAILDEAIELRDAGVEAPILVLGYTSPHALREAISRNITLTVFSTDVRDALLEVA 120

Query: 116 MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                     ++ +TG  R+G+   +E LD     ++    ++  I +H A AD+  S  
Sbjct: 121 SEAESPIKVHIKTETGMGRVGVQTKEELLDVMTPLYHHNNIEVEGIFTHFAEADNLQSTY 180

Query: 175 NSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              Q  RF + I   +            +S+G L   + H  + R GISLYG    ++  
Sbjct: 181 TDEQFARFLSFIEAIEKDDMHVPIKHCCNSAGTLFHKDKHLDMVRVGISLYGLRPDVSLE 240

Query: 230 HPMQ--TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P++    +   + I+ +RK   G  +SYG   KL+ + ++A   IGYADG    LS   
Sbjct: 241 FPIELTQAMRLFSSIVSLRKLPEGSSISYGRTHKLSSEKVVATMPIGYADGLSRALSN-- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
                     G   + G   PILG++ MD TM D+TD     +GD+++       +D++A
Sbjct: 299 ---------KGFVTLHGQKAPILGRVCMDQTMIDVTDIPDAALGDHVEF-----PIDEMA 344

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             +GT NY+++  +  R  ++Y
Sbjct: 345 ELTGTINYEIVCAVSKRVPRYY 366


>gi|149192465|ref|ZP_01870656.1| alanine racemase [Vibrio shilonii AK1]
 gi|148833698|gb|EDL50744.1| alanine racemase [Vibrio shilonii AK1]
          Length = 347

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 98/349 (28%), Positives = 156/349 (44%), Gaps = 20/349 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   +     I+L AL +N   +   + N++  AVVK N YG G   IA      G   F
Sbjct: 1   MSYMKAATAHINLDALAHNLACIKQKAPNSKVMAVVKANGYGHGLRHIAKNAT--GADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + P    ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRASGVVKPILLLEGFYSPNDLPVLVTNNIQTVVHCYEQLDALEQA-ELE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  +F         + +    +SH  CAD+  + +   Q
Sbjct: 118 TPVVVWLKVDSGMHRLGVREEQYQEFVERLHRCDNVAKPLRYMSHFGCADELDNTMTQQQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTV 235
           +E F +L     G E S+A+S+G+L          RPGI +YG +   +K       + V
Sbjct: 178 IELFLSLTEGCNG-ERSMAASAGLLEWQQSRLDWVRPGIIMYGVSPFGDKTAADMGFKPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R    GE V YG      RD+ + V AIGY DGYP T             
Sbjct: 237 MTLKSHLIAVRDVKKGESVGYGATWTSQRDTKVGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344
            G    + G  VPI G+++MDM   D+      +VGD   ++G ++  +
Sbjct: 287 -GTPVLVNGRKVPIAGRVSMDMLTVDLGPDALDQVGDEAILWGEELPSE 334


>gi|119471275|ref|ZP_01613778.1| alanine racemase 1, PLP-binding, biosynthetic [Alteromonadales
           bacterium TW-7]
 gi|119445741|gb|EAW27024.1| alanine racemase 1, PLP-binding, biosynthetic [Alteromonadales
           bacterium TW-7]
          Length = 359

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/371 (28%), Positives = 177/371 (47%), Gaps = 21/371 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                +I+LTAL +N   +   + N++  AV+K NAYG G  KIA  L       F V  
Sbjct: 2   RLATAEINLTALAHNLAQVKRFAPNSKVMAVLKANAYGHGLVKIAQHL--NDADAFAVAR 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E + LR       I +L G     +  I+   N   +I    QL              
Sbjct: 60  IDEALALRAGGLTKPIVLLEGFFNKDDLPILLANNFQTIIHDEYQLAALE-EAELEAPLL 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182
             L+V+TG +RLG++ ++  +F            ++ +++H ACADD ++   + Q+ +F
Sbjct: 119 CWLKVNTGMHRLGIAPEQFDEFYKRLQKTPNANNTVNLMTHFACADDVNNTKTAQQISQF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAE 239
             L+++       L++S+GI+  PN H    RPG+ LYG +   N   + H ++ V+   
Sbjct: 179 DCLVNNINQAHC-LSNSAGIIAWPNAHGDWVRPGLMLYGVSPMANALGEQHQLKPVMRLT 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            R+I +R   A E V YGG+ K  + + +AV A+GY DGYP                G  
Sbjct: 238 TRVIAVRHVPANEAVGYGGRWKSDKATQLAVVAMGYGDGYPRHA-----------KEGTP 286

Query: 300 GFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             I      I+G + MDM   DI  +  +I+VGD + ++GP++ ++++A  + T  Y+LL
Sbjct: 287 VVIGKQRYGIVGSVAMDMISVDIGQNEHNIKVGDRVTMWGPELPVEEIAQCADTIPYELL 346

Query: 359 VRIGTRYAKFY 369
             I  R +  Y
Sbjct: 347 CNITPRVSYEY 357


>gi|114331518|ref|YP_747740.1| alanine racemase [Nitrosomonas eutropha C91]
 gi|122313683|sp|Q0AFV7|ALR_NITEC RecName: Full=Alanine racemase
 gi|114308532|gb|ABI59775.1| alanine racemase [Nitrosomonas eutropha C91]
          Length = 361

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/368 (28%), Positives = 168/368 (45%), Gaps = 20/368 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +R  ID TAL++N   + + +  AR  AVVK +AYG G  +   AL       F V  
Sbjct: 3   RPIRALIDCTALQHNLSVVRSHTRQARIMAVVKADAYGHGLLRTTQAL--NTADGFAVLE 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +E  ++LR       + +L G    +E    D   L  VI S  QL+        G    
Sbjct: 61  LEAAIQLREAGFNQPVLLLEGFFSAEELEAIDHYQLSTVIHSHEQLSLLLAHRKTGKP-D 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF 182
             L+++TG NRLG   +E     +     +      +++H +CADD   +   + QL++F
Sbjct: 120 IYLKINTGMNRLGFRPEEESYVFNRIRQWRSDTSITLMTHFSCADDALEADQVNQQLDQF 179

Query: 183 RTLIS-HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTA 238
             L       +  +LA+S+ IL  P  H    RPGI LYG +   +K+     ++ V+T 
Sbjct: 180 AALHDVKENNLPQTLANSAAILRYPGTHADWVRPGIVLYGASPLPDKTGIELGLRPVMTL 239

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ++II +++    + V YGGQ    +   I V A GYADGYP                G 
Sbjct: 240 TSQIIAVQQLDPSDRVGYGGQFIANQPMRIGVVAAGYADGYPRHA-----------PTGT 288

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    ++G+I+MDM   D+       VG  + ++G  + +++VA ++ T +Y+LL
Sbjct: 289 PVLVNGQRTRLVGRISMDMLTVDLNGISEAGVGSPVTLWGEGLPVEEVAKSAQTISYELL 348

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 349 TALSPRVP 356


>gi|291519681|emb|CBK74902.1| alanine racemase [Butyrivibrio fibrisolvens 16/4]
          Length = 389

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 168/386 (43%), Gaps = 29/386 (7%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M S       +++L A+  N+  +    G N +   VVK +AYG G  ++A  L   G  
Sbjct: 1   MESTLRRTWAEVNLDAIAYNYKKIKEKIGENTKFLGVVKADAYGHGSVQVAQLLEEIGAD 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMS 117
              V+S +E ++LR+   +  I +L      Q   + + N+   I+       + ++ + 
Sbjct: 61  YLAVSSADEALELRVNGIKMPILILGHTPKEQVGRLIEYNITQAITCKAKADEYSAEAVK 120

Query: 118 CGVSHPYALQVDTGFNRLGLSLQE-----ALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
           CG +    ++VDTG +RLG           +D    + N        I +H A AD+   
Sbjct: 121 CGGTLKVHIKVDTGMSRLGYLCDNGYFDTGVDGIVEACNMPGLSAEGIFTHFAVADEFGD 180

Query: 173 H---VNSVQLERFRTLISHY------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT 223
                   Q E F  +I         K      A++  +   P  +  + RPG+ LYG  
Sbjct: 181 ECDKYTKHQFELFTGVIEAVEEKLGRKFAIRHCANTGAVARFPETYLDMVRPGLLLYGYG 240

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           +  ++   ++  +T +  +  I+   AG  +SYGG  K  + + I V   GYADG+  +L
Sbjct: 241 EFAHE-MGLKPAMTMKTTVSTIKIYPAGTAISYGGIFKTEKTTRIGVLPYGYADGFLRSL 299

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
           S   S ++                 + GKI MDM M DITD  S++VG  ++IFG    +
Sbjct: 300 SNKCSLYTKEGP-----------AKLRGKICMDMCMIDITDMPSVDVGSEVEIFGEKNSI 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           D++A  +GT  Y+L   +  R  + Y
Sbjct: 349 DELAELAGTIPYELTCAVSKRVPRVY 374


>gi|297159652|gb|ADI09364.1| alanine racemase [Streptomyces bingchenggensis BCW-1]
          Length = 384

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/388 (26%), Positives = 164/388 (42%), Gaps = 30/388 (7%)

Query: 1   MHSNEF-LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+      R  +DL AL+ N  ++ A +  A   AVVK +AYG G    A A   AG   
Sbjct: 1   MNETPMRARAVVDLAALRANVRALRAAAPGAELMAVVKSDAYGHGAVPCARAAREAGASW 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSC 118
               + EE + LR      R+        G  +   + ++   +S++       +    C
Sbjct: 61  LGTATPEEALALRAAGDTGRLLCWLWTPGGPWREAIEADVDVSLSAMWALREAVAAAREC 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVN 175
           G +    L+ DTG  R G    +  +    +   +      ++ + SH ACAD+P     
Sbjct: 121 GRTARVQLKADTGLGRNGCPPADWPELVAAARAAEAEGTVTVTGLWSHFACADEPGHPSI 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           + QL+ FRTL++  +  G+      +A+S   L  P  HF L R GI++YG +      H
Sbjct: 181 AAQLKVFRTLLAQAEQAGLRPEVRHIANSPATLTLPESHFDLVRTGIAVYGISPSPEVGH 240

Query: 231 PM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           P     + V+T  A +  +++   G  VSYG +      + +A+  +GYADG P   SG 
Sbjct: 241 PGDFGLRPVMTLVASLASVKRVPGGHGVSYGHRYITPGPTTLALVPVGYADGVPRHASGT 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIK 342
                      G   + G    + G + MD  + D+        GD   +FGP    +  
Sbjct: 301 -----------GPVLVAGKWRTVAGTVAMDQFVVDLGGDA-AAPGDEAVLFGPGDRGEPT 348

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFYT 370
            +D A A G+  Y+++ RI  R  + Y 
Sbjct: 349 AEDWARAVGSIAYEIVTRISARVPRVYV 376


>gi|187928333|ref|YP_001898820.1| alanine racemase [Ralstonia pickettii 12J]
 gi|226711056|sp|B2UAX2|ALR_RALPJ RecName: Full=Alanine racemase
 gi|187725223|gb|ACD26388.1| alanine racemase [Ralstonia pickettii 12J]
          Length = 374

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/367 (26%), Positives = 155/367 (42%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL NN       + N+R  AVVK NAYG G E++   L       F +  
Sbjct: 3   RPIQAVIHGPALANNLQIARRHAPNSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V+LR    Q  + +L G   P    I+    L   +    QL    +L        
Sbjct: 61  LDEAVRLRQLGWQGPVLLLEGFFKPEDLAIVEQYRLTTTVHCEEQLRML-ELARLKGPTS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG +RLG +          +         + ++H + AD P       QL  F 
Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGVGTIVHMTHFSDADGPRGI--EHQLAAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G EASL++S+  L  P  H    RPG+ +YG +            +   ++ +
Sbjct: 178 RATQGLPG-EASLSNSAATLWHPKAHRDWVRPGVIMYGASPTGVAADIDGTGLMPAMSLK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I I+    G  + YG +  +     I V A GYADGYP    G D  H+P       
Sbjct: 237 SELIAIQDLQPGATIGYGSRFTVEHPMRIGVVACGYADGYPRHAPGWDGNHTP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+       VG  + ++G  + +DDVA ASGT  Y+L+ 
Sbjct: 290 VLVDGVRTHIVGRVSMDMITVDLAGVPEARVGTPVTLWGEGLPIDDVAQASGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALAPRVP 356


>gi|52144988|ref|YP_081841.1| alanine racemase [Bacillus cereus E33L]
 gi|51978457|gb|AAU20007.1| alanine racemase [Bacillus cereus E33L]
          Length = 389

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 158/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|294497061|ref|YP_003560761.1| alanine racemase [Bacillus megaterium QM B1551]
 gi|294346998|gb|ADE67327.1| alanine racemase [Bacillus megaterium QM B1551]
          Length = 396

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 95/381 (24%), Positives = 158/381 (41%), Gaps = 29/381 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +ID+ A+  N + +  L    +   AVVK NAYG G +++A     AG     V 
Sbjct: 16  RETWAEIDVEAIFQNVNHVRELIPGHKTLMAVVKANAYGHGDKEVAEIALQAGADMLAVA 75

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E + LR    +  I VL  +     +   + ++     S   +   + ++       
Sbjct: 76  FLDEAIALRKKGIKESILVLGAVPTLHIQTALEWDVTVTAYSKAWIEEAASILDENSQLH 135

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERF 182
             L++DTG  RLG+  +E L  T        G  L  + +H A AD+ +S     Q   F
Sbjct: 136 MHLKIDTGMGRLGVRTKEELHETMKIIASHSGFVLDGVFTHFATADELNSSYFEEQYTFF 195

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233
             ++   K           A+S+ +L  P   F   R GIS+YG +           P++
Sbjct: 196 EEMVRIVKEYNFTPPMIHCANSAALLRRPKDIFNGVRLGISMYGLSPSEELKEVLPIPLK 255

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
              +  +RI+ ++K   G  +SYG   +   D  IA   +GYADG+   LS         
Sbjct: 256 QAFSLHSRIVHVKKVKKGSHISYGATYEAKEDEWIATIPVGYADGWIRKLSNF------- 308

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                +  + G  VPI+G+I MD  M  +      ++G  +   G     +I +D+VA  
Sbjct: 309 -----EVLVDGVKVPIVGRICMDQLMIKLPKMY--KMGTKVTFIGKQKGAEITIDEVAKH 361

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
             T NY++   +  R  + YT
Sbjct: 362 LETINYEIPCMVAARVPRVYT 382


>gi|284048796|ref|YP_003399135.1| alanine racemase [Acidaminococcus fermentans DSM 20731]
 gi|283953017|gb|ADB47820.1| alanine racemase [Acidaminococcus fermentans DSM 20731]
          Length = 389

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 161/386 (41%), Gaps = 29/386 (7%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M S       +IDL AL  N+H +        +   VVK +AYG G  ++   L   G  
Sbjct: 1   MKSTLRRTWAEIDLDALAYNYHKIREHIGPQVKFLGVVKADAYGHGAVQVGSHLQALGAN 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMS 117
              V+S++E ++LR       I +L      Q   +   N+   ++     L +  + + 
Sbjct: 61  YLAVSSIDEAMELRFNGITMPILILGHTPREQVDRLICFNITQAVTCEAKALEYSEEAVK 120

Query: 118 CGVSHPYALQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            G +    ++VDTG +RLG        +  ++   ++ +    +   I +H A AD+P  
Sbjct: 121 YGGTLKIHVKVDTGMSRLGYICEGDYFEHGVEGIIHACSLPGLEPEGIFTHFAVADEPGE 180

Query: 173 H---VNSVQLERFRTLISHYKGIE------ASLASSSGILLGPNYHFQLTRPGISLYGGT 223
                   Q   FR +    +            A++    L P+ +  + RPG+ LYG  
Sbjct: 181 DALAYTRHQFALFRKVCDEVEKRTGKKFKLRHCANTGATTLFPDTYLDMVRPGLLLYGYG 240

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           +       ++ V+T +  I  I+    G  +SYGG       + + VA IGYADG+   L
Sbjct: 241 EHARM-LGLKPVMTVKTTISTIKIYPKGTKISYGGIYTCPDTTRMGVAPIGYADGFMRCL 299

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
           S   S  +                P  G+I MDM M D+T    ++VG  +++FG    L
Sbjct: 300 SNRCSFVTEEGP-----------APQRGRICMDMCMVDLTGKPKVDVGSELELFGTRQSL 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           DD+A  +GT  Y++   I  R  + Y
Sbjct: 349 DDLAQLAGTIPYEITCNISKRVPRVY 374


>gi|311693521|gb|ADP96394.1| alanine racemase [marine bacterium HP15]
          Length = 358

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 172/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +IDL AL+ N+ +    +G AR  AVVK + YG G   +A AL ++    + V  +EE 
Sbjct: 7   ARIDLDALRRNFQTAQRRAGGARVMAVVKADGYGHGIGPVASAL-DSLAPKYAVACLEEA 65

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R       + +L G+H          +   PV  S  QL +  +L        + L+
Sbjct: 66  RAIRETGLIQSVVLLQGVHAEADIDECARSGFEPVFHSFQQLAWLERL---DTWPAFWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           V++G NRLG    E               +L   ++H ACADDP S + + Q   F    
Sbjct: 123 VNSGMNRLGFHPDELAGVMSRLQAMSADTELLGFVTHFACADDPDSAMTAQQTAVFEKAT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEARII 243
           S +  +  S+A+S+         F  +RPGI LYGG+  +  + P    + V++ EA +I
Sbjct: 183 SSFPDLMKSVANSAAHFRPGQPMFDWSRPGIMLYGGSPMVGTTGPELGLEPVMSLEAPLI 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R   AGE V YG      RD+ + + AIGY DGYP                     I 
Sbjct: 243 STRMVPAGESVGYGASWVADRDTRMGMVAIGYGDGYPRHAG-----------TNTPAAIN 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  + ++G+++MDM   D+T++   + GD ++++G  + +D+VA  +GT +Y+L+  I  
Sbjct: 292 GQRIRLIGRVSMDMLAVDLTNAPDAKEGDSVELWGRTVGVDEVAACAGTISYELMTGITG 351

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 352 RVPRQY 357


>gi|256015684|ref|YP_003105693.1| alanine racemase [Brucella microti CCM 4915]
 gi|255998344|gb|ACU50031.1| alanine racemase [Brucella microti CCM 4915]
          Length = 396

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 193/379 (50%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 18  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 78  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+L G   +       +             
Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALCGIDPERQHDFSDKVAHENKKPKHSIL 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 367 TIPYEILTALGNRYARVYV 385


>gi|290508880|ref|ZP_06548251.1| alanine racemase [Klebsiella sp. 1_1_55]
 gi|289778274|gb|EFD86271.1| alanine racemase [Klebsiella sp. 1_1_55]
          Length = 356

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 164/369 (44%), Gaps = 26/369 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   IDL AL+ N   +   +  +R  AVVK NAYG G  ++  AL   G   F + +
Sbjct: 3   RPVVASIDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSALS--GADGFALLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G     E  + D   L   + S  Q+    +         
Sbjct: 61  LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLTTSVHSNWQIKALQQA-KLRAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG   +                   ++SH A A++P   V     E  R
Sbjct: 120 IYLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
            +    +G+    SLA+S+  L  P  HF   RPGI LYG +         +  ++ V+T
Sbjct: 175 RIEQAAEGLNCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II ++    GE + YGG  + +++  I + A GYADGYP                G
Sbjct: 235 LRSEIIGVQNLRPGEAIGYGGLYRTSQEQRIGIVACGYADGYPR-----------VAPSG 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y+L
Sbjct: 284 TPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYEL 343

Query: 358 LVRIGTRYA 366
           +  +  R  
Sbjct: 344 MCALAPRVP 352


>gi|229194629|ref|ZP_04321426.1| Alanine racemase [Bacillus cereus m1293]
 gi|228588850|gb|EEK46871.1| Alanine racemase [Bacillus cereus m1293]
          Length = 389

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 158/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKEVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CKVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|49479127|ref|YP_034579.1| alanine racemase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118476000|ref|YP_893151.1| alanine racemase [Bacillus thuringiensis str. Al Hakam]
 gi|196036026|ref|ZP_03103427.1| alanine racemase [Bacillus cereus W]
 gi|196041155|ref|ZP_03108451.1| alanine racemase [Bacillus cereus NVH0597-99]
 gi|196046235|ref|ZP_03113462.1| alanine racemase [Bacillus cereus 03BB108]
 gi|218901445|ref|YP_002449279.1| alanine racemase [Bacillus cereus AH820]
 gi|225862294|ref|YP_002747672.1| alanine racemase [Bacillus cereus 03BB102]
 gi|228912983|ref|ZP_04076626.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228925498|ref|ZP_04088591.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228931744|ref|ZP_04094645.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228944050|ref|ZP_04106433.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229119908|ref|ZP_04249166.1| Alanine racemase [Bacillus cereus 95/8201]
 gi|229182639|ref|ZP_04309884.1| Alanine racemase [Bacillus cereus BGSC 6E1]
 gi|49330683|gb|AAT61329.1| alanine racemase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118415225|gb|ABK83644.1| alanine racemase [Bacillus thuringiensis str. Al Hakam]
 gi|195991395|gb|EDX55362.1| alanine racemase [Bacillus cereus W]
 gi|196022980|gb|EDX61660.1| alanine racemase [Bacillus cereus 03BB108]
 gi|196028090|gb|EDX66701.1| alanine racemase [Bacillus cereus NVH0597-99]
 gi|218535948|gb|ACK88346.1| alanine racemase [Bacillus cereus AH820]
 gi|225790248|gb|ACO30465.1| alanine racemase [Bacillus cereus 03BB102]
 gi|228600834|gb|EEK58409.1| Alanine racemase [Bacillus cereus BGSC 6E1]
 gi|228663546|gb|EEL19128.1| Alanine racemase [Bacillus cereus 95/8201]
 gi|228815624|gb|EEM61862.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228827924|gb|EEM73657.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228834160|gb|EEM79704.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228846658|gb|EEM91667.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 389

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 158/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|42779353|ref|NP_976600.1| alanine racemase [Bacillus cereus ATCC 10987]
 gi|42735268|gb|AAS39208.1| alanine racemase [Bacillus cereus ATCC 10987]
          Length = 389

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +       AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSGVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|113868091|ref|YP_726580.1| alanine racemase [Ralstonia eutropha H16]
 gi|123032940|sp|Q0K9V9|ALR_RALEH RecName: Full=Alanine racemase
 gi|113526867|emb|CAJ93212.1| alanine racemase [Ralstonia eutropha H16]
          Length = 373

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 158/367 (43%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +  +R  AVVK NAYG G  ++  AL   G   F +  
Sbjct: 3   RPIHAVIHQPALANNLDIIRGKAPESRIWAVVKANAYGHGIRRVFAALR--GADGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E V LR    Q  I +L G   P    +I    L   I    QL       + G    
Sbjct: 61  LNEAVLLRDLGWQGPILLLEGFFQPQDVAVIEQYRLTTAIHCDEQLRMLESARAKG-PLA 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NRLG            +         + ++H + AD       + Q+E F 
Sbjct: 120 IQLKLNTGMNRLGFHPAAYRTAWERARAMPCVGSIVHMTHFSDADSARG--VAHQIEAFD 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
              ++  G EASL++S+ +L  P  H    RPGI LYG +     +      +Q  ++  
Sbjct: 178 AATANLPG-EASLSNSAAVLWHPQAHRAWVRPGIILYGASPTGRDADIAGTGLQPAMSLH 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG      R   I V A GYADGYP   SG   + +P       
Sbjct: 237 SELISVQDLQPGDTVGYGSLFTAERPMRIGVVACGYADGYPRHASGWGEQRAP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T      VG  + ++G  + +D+VA ASGT  Y+L+ 
Sbjct: 290 VLVDGVRTELVGRVSMDMLCVDLTPCPKARVGSPVTLWGQGLPIDEVAQASGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALAPRVP 356


>gi|308068000|ref|YP_003869605.1| alanine racemase 1 [Paenibacillus polymyxa E681]
 gi|305857279|gb|ADM69067.1| Alanine racemase 1 [Paenibacillus polymyxa E681]
          Length = 398

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/391 (25%), Positives = 168/391 (42%), Gaps = 32/391 (8%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAV-VKDNAYGLGCEKIAPALYNAGVQ 58
           M +     R +I+L  L  N+ +        +   V VK NAYG G  +I+  L   G  
Sbjct: 1   MQAQYRSTRAEINLDHLGANYEAFRKALPADKLILVCVKANAYGHGAVEISKELERLGAD 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              V  ++E ++LR    Q  I VL    P   +  ++ ++   + S   L    +L   
Sbjct: 61  YLSVAFLDEALELRHAGVQLPILVLGYTSPDAVQTAWEHDISLTVFSEEVLESIRRLDRQ 120

Query: 119 G--VSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           G        +++D+G  RLGL   +EA+ F   +   +   L  + +H A AD+      
Sbjct: 121 GSERKLKVHIKIDSGMGRLGLLPGEEAMAFVRQANELEQVLLEGMYTHFARADEEDKSYT 180

Query: 176 SVQLERFRTLISHYK--GIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
            +Q +RFR +    +  GI   +    +S+  +  P+    + R GIS+YG         
Sbjct: 181 LLQYDRFRGVAQALREQGITIPIIHTGNSAATIDTPSLSPNMVRIGISIYGLYPSDEVNR 240

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           ++  +  V++ +  ++  +    G  VSYG +   + +  I    IGYADGY   LSG  
Sbjct: 241 QAIELLPVLSLKTAVVYTKTLPPGWGVSYGTRYVTSSEERIGTLPIGYADGYSRMLSGKI 300

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD--- 340
                      +  I+G  VP+LG I MD  M  +     D+  I+ G+ + + G     
Sbjct: 301 -----------EVLIRGRRVPVLGTICMDQCMVSLQSFAEDAEEIQTGEEVVLIGQQSGE 349

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            I  D++A   GT +Y+++  I  R  + YT
Sbjct: 350 TIAADELASKLGTIHYEVICMIADRVPRVYT 380


>gi|288934755|ref|YP_003438814.1| alanine racemase [Klebsiella variicola At-22]
 gi|288889464|gb|ADC57782.1| alanine racemase [Klebsiella variicola At-22]
          Length = 356

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 164/369 (44%), Gaps = 26/369 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   IDL AL+ N   +   +  +R  AVVK NAYG G  ++  AL   G   F + +
Sbjct: 3   RPVVASIDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSALS--GADGFALLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G     E  + D   L   + S  Q+    +         
Sbjct: 61  LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLTTSVHSNWQIKALQQA-KLRAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG   +                   ++SH A A++P   V     E  R
Sbjct: 120 IYLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
            +    +G+    SLA+S+  L  P  HF   RPGI LYG +         +  ++ V+T
Sbjct: 175 RIEQAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II ++    GE + YGG  + +++  I + A GYADGYP                G
Sbjct: 235 LRSEIIGVQNLRPGEAIGYGGLYRTSQEQRIGIVACGYADGYPR-----------VAPSG 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y+L
Sbjct: 284 TPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYEL 343

Query: 358 LVRIGTRYA 366
           +  +  R  
Sbjct: 344 MCALAPRVP 352


>gi|225026346|ref|ZP_03715538.1| hypothetical protein EUBHAL_00588 [Eubacterium hallii DSM 3353]
 gi|224956356|gb|EEG37565.1| hypothetical protein EUBHAL_00588 [Eubacterium hallii DSM 3353]
          Length = 390

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 169/382 (44%), Gaps = 29/382 (7%)

Query: 5   EFLR--LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           E+LR   +IDL A++ N+ ++   +G NA T AV+K + YG G  ++A  L +     F 
Sbjct: 19  EYLRTYCEIDLKAIRENYINIKKKTGDNAMTMAVIKADGYGHGAVEVAHYLNDI-ADYFG 77

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGV 120
           V +++EGV+LR    +  I +L    P       +  +   I             +    
Sbjct: 78  VATIDEGVELRKAGLKQPILLLGYNSPSLYYKNLEYGVDQTIYCYDTAKAMSEAAVKAEK 137

Query: 121 SHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           +    + +DTG  R+GLS  E  L            ++  + +HL+CAD         Q+
Sbjct: 138 TARIHIALDTGMTRIGLSPDEKGLAIVKQIAELPNIKIEGLFTHLSCADMTDKAYTESQM 197

Query: 180 ERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---P 231
           ER+   +      GIE     + +S+ I+   ++ + + R GI LYG             
Sbjct: 198 ERYDHFVQLLDEAGIEIPVKHICNSAAIMEYEDHRYDMARAGIILYGMYPSDEVDFSNLD 257

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +   ++  + ++ I +      VSYG    +     +A  ++GYADGY  +LS       
Sbjct: 258 LTPAMSWYSHVVNIMEPEMERGVSYGATYIVEHPCRLATVSVGYADGYARSLSN------ 311

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 G   I G   PI+G++ MD  M DITD   +++ D + + G D    I ++D+A
Sbjct: 312 -----KGWVLIHGQKAPIVGRVCMDQMMVDITDIPDVKLEDIVTLIGKDGDNYISVEDMA 366

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             +G+ NY+ +  +G R  + Y
Sbjct: 367 NLAGSFNYEFVCDVGKRVPRVY 388


>gi|332535828|ref|ZP_08411559.1| alanine racemase, biosynthetic [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034780|gb|EGI71319.1| alanine racemase, biosynthetic [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 359

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/371 (29%), Positives = 175/371 (47%), Gaps = 21/371 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                +I+LTAL +N   +   + N++  AV+K NAYG G   IA  L       F V  
Sbjct: 2   RLATAEINLTALAHNLAQVKGFAPNSKVMAVLKANAYGHGLVTIAQHL--NNADAFAVAR 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG+ LR       I +L G        I+   N   +I    QL    K         
Sbjct: 60  IDEGLALRAGGLTKPIVLLEGFFNKADLPILLANNFQTIIHDEYQLAALEKA-KLDAPIT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182
             L+V+TG +RLG++ ++   F +        + S+ +++H +CADD  +     Q+  F
Sbjct: 119 CWLKVNTGMHRLGIAPEQFEAFYNRLQKTPNAKNSVNLMTHFSCADDVDNAKTVQQITLF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
             L++        L++S+GI+  P+ H    RPG+ LYG +     I + H ++ V+   
Sbjct: 179 DNLVNGIDQAHC-LSNSAGIIAWPSGHGDWVRPGLMLYGVSPMANSIGQQHKLKPVMRLT 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            R+I +R   A E V YGG+ K  + + +AV A+GY DGYP                G  
Sbjct: 238 TRVIAVRDVPANEAVGYGGRWKSDKPTKLAVVAMGYGDGYPRHA-----------KEGTP 286

Query: 300 GFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             I      I+G + MDM   DI  +  +I+VGD + ++GP++ ++++AL + T  Y+LL
Sbjct: 287 VIIGEQRYGIVGSVAMDMISVDIGANEHNIKVGDRVTMWGPELPVEEIALCADTIPYELL 346

Query: 359 VRIGTRYAKFY 369
             I  R +  Y
Sbjct: 347 CNITPRVSYEY 357


>gi|142822|gb|AAA22378.1| D-alanine racemase cds [Bacillus subtilis]
 gi|224732|prf||1112147A Ala racemase
          Length = 389

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 166/384 (43%), Gaps = 30/384 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +  F R    +IDL+A+K N  +M    G +    AV K NAYG G  + A A  +AG
Sbjct: 1   MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVEKANAYGHGDAETAKAALDAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                +  ++E + LR    +A I VL  + P    I  + ++     SV  L   ++  
Sbjct: 61  ASCLAMAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHT 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVN 175
             G S  + L+VDTG NRLG+  +E +       ++    +   + +H A AD+      
Sbjct: 121 KKG-SLHFHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYF 179

Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----S 229
            +Q ERF+ LI+    K +    A+S+  L      F   R GI +YG     +      
Sbjct: 180 LMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADMSDEIP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++   T  + +  ++    GE VSYG +    +D+ I    +GYADG+   L G D  
Sbjct: 240 FQLRPAFTLHSTLSHVKLIRKGESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGTDI- 298

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       +KG  + I G+I MD  M ++        G  + + G      I +D+
Sbjct: 299 -----------LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY++   I +R  + +
Sbjct: 346 IAGRLETINYEVACTISSRVPRMF 369


>gi|266620460|ref|ZP_06113395.1| alanine racemase [Clostridium hathewayi DSM 13479]
 gi|288867938|gb|EFD00237.1| alanine racemase [Clostridium hathewayi DSM 13479]
          Length = 394

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 163/385 (42%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M     +   ++L A++ N  +M A L        VVK + YG G   +A    +  V  
Sbjct: 1   MERYSRVYETVNLDAIRQNMEAMRANLKEGTGMIGVVKADGYGHGSVPVA-CAIDPYVSG 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSC 118
           +   + EE V LR +     I +L        + +    L P +         S+L +  
Sbjct: 60  YATATPEEAVILRRHGITKPILILGVSPESSFEDLIRYELRPAVFRYESAARLSELSVKA 119

Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G   P  + +DTG +R+G  +   A + T         ++  + +H A AD+      + 
Sbjct: 120 GKISPIHIALDTGMSRIGYPVTAAAAEETVRISRLPGIRIEGLFTHFARADERDKGATAR 179

Query: 178 QLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KS 229
           Q+E F   IS    +GI       ++S+GIL  P  +F   R GIS+YG         + 
Sbjct: 180 QMELFTEFISMLTERGITIPVLHCSNSAGILELPQANFNAVRAGISIYGLYPSDEVEKEP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +   +  ++ I  ++    G  VSYGG     R + IA   +GY DGYP +LSG    
Sbjct: 240 VHLTPAMELKSTISYLKTIAPGTPVSYGGTFTAERKTAIATIPVGYGDGYPRSLSGR--- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   I+G    ILG++ MD  M D T+    E GD + + G D    I +++
Sbjct: 297 --------GDVLIRGRRARILGRVCMDQLMVDTTEIPEAEEGDEVTLIGKDGDEEITVEE 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +A   G  +Y++L  IG R  + Y 
Sbjct: 349 LARIGGGFHYEILCDIGKRVPRVYV 373


>gi|212638046|ref|YP_002314566.1| D-alanine racemase [Anoxybacillus flavithermus WK1]
 gi|226711025|sp|B7GFP5|ALR_ANOFW RecName: Full=Alanine racemase
 gi|212559526|gb|ACJ32581.1| D-alanine racemase [Anoxybacillus flavithermus WK1]
          Length = 385

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 144/376 (38%), Gaps = 28/376 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +IDL A+  N  SM    G +    AVVK NAYG G  ++A     AG     V  ++
Sbjct: 10  WAEIDLDAIFYNVQSMKQHVGSHVEVIAVVKANAYGHGDIQVAKTALEAGATRLAVAFLD 69

Query: 67  EGVKLRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E + LR         I VL    P    +    N+   +                     
Sbjct: 70  EALALRKKGISLDVPILVLGATKPQYAPLAASQNIALTVFRADWFEQAIVYAPYEQPLNV 129

Query: 125 ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            +++DTG  RLG    +E     +         L  + +H A AD+ +    S Q + F 
Sbjct: 130 HMKLDTGMGRLGAKTKEEVQQMIYAIEQHPSFILEGVYTHFATADEQNIDYFSFQYDTFL 189

Query: 184 TLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVT 237
            ++     +      A+S+  L  P+  F   R GIS+YG            +P++   +
Sbjct: 190 HMLEWLSIQPPLIHCANSAAGLRYPDRIFNAVRFGISMYGLAPSQEMKSLLPYPLKEAFS 249

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +R+  ++K   GE +SYG   +   D  I    IGYADG+   +              
Sbjct: 250 LHSRLTHVKKVKGGEKISYGATYEAETDEWIGTVPIGYADGWLRRMQHFS---------- 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G   PI+G++ MD  M  +     + VG  + + G      I +DDVA    T 
Sbjct: 300 --VLVDGKRAPIVGRVCMDQMMIRLP--YELPVGTKVTLIGEQQGDRISVDDVAAHVNTI 355

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   I  R  + +
Sbjct: 356 NYEIPCTISYRVPRIF 371


>gi|47567489|ref|ZP_00238201.1| alanine racemase [Bacillus cereus G9241]
 gi|228983498|ref|ZP_04143708.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229154011|ref|ZP_04282140.1| Alanine racemase [Bacillus cereus ATCC 4342]
 gi|47555891|gb|EAL14230.1| alanine racemase [Bacillus cereus G9241]
 gi|228629532|gb|EEK86230.1| Alanine racemase [Bacillus cereus ATCC 4342]
 gi|228776242|gb|EEM24598.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 389

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 158/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CKVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|163760547|ref|ZP_02167628.1| putative alanine racemase protein [Hoeflea phototrophica DFL-43]
 gi|162282162|gb|EDQ32452.1| putative alanine racemase protein [Hoeflea phototrophica DFL-43]
          Length = 374

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/365 (44%), Positives = 219/365 (60%), Gaps = 9/365 (2%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+ +DLTAL  NW S+  LSG+AR  A VK + YG+G  + A  L   G +DFFV    E
Sbjct: 16  RMSVDLTALAANWLSLRELSGSARCGAAVKADGYGIGAIEAASRLAREGCRDFFVADANE 75

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G  LR + P  RI VL G+       I   +L+PVI+S  Q  F++          YAL 
Sbjct: 76  GASLRPHLPDVRIHVLNGVFEDSFAQILAHDLVPVINSTEQAAFWTGTAD---GRAYALH 132

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL+ ++A  +  +         +L++SH ACAD+P   +N+ Q+E F  L +
Sbjct: 133 IDTGMNRLGLTPEQAAAYAQSDAPPP----ALLMSHFACADEPGHPLNARQIEMFEALKA 188

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            +  IEASLA+S+GI LG   H  LTRPGISLYGG    + +  M+ VVTAE R++ IR+
Sbjct: 189 CFPSIEASLANSAGIHLGKPAHHDLTRPGISLYGGNPVADANPKMRPVVTAETRVLQIRQ 248

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
           A AG+ VSYG    L+RDS IAV  IGYADG+    SG       +   G  G I G  V
Sbjct: 249 ARAGQPVSYGAAHFLSRDSRIAVCGIGYADGFLRAGSGAGVPLRSAAPKGAFGAINGKRV 308

Query: 308 PILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++GKITMD+TMFD+TD     I  G +I++FGP I L++ A A+GT +Y++L  +G R+
Sbjct: 309 PVIGKITMDLTMFDVTDLGEDEIGAGSWIELFGPTISLEEAAQAAGTISYEMLTSLGRRH 368

Query: 366 AKFYT 370
           A+ YT
Sbjct: 369 ARRYT 373


>gi|206580802|ref|YP_002237825.1| alanine racemase [Klebsiella pneumoniae 342]
 gi|206569860|gb|ACI11636.1| alanine racemase [Klebsiella pneumoniae 342]
          Length = 356

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/369 (27%), Positives = 164/369 (44%), Gaps = 26/369 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   IDL AL+ N   +   +  +R  AVVK NAYG G  ++  AL   G   F + +
Sbjct: 3   RPVVASIDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSALS--GADGFALLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G     E  + D   L   + S  Q+    +         
Sbjct: 61  LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLTTSVHSNWQIKALQQA-KLRAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG   +                   ++SH A A++P   V     E  R
Sbjct: 120 IYLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
            +    +G+    SLA+S+  L  P  HF   RPGI LYG +         +  ++ V+T
Sbjct: 175 RIEQAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I ++    GE + YGG  + +++  I + A GYADGYP                G
Sbjct: 235 LRSEVIGVQNLRPGEAIGYGGLYRTSQEQRIGIVACGYADGYPR-----------VAPSG 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y+L
Sbjct: 284 TPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYEL 343

Query: 358 LVRIGTRYA 366
           +  +  R  
Sbjct: 344 MCALAPRVP 352


>gi|218133145|ref|ZP_03461949.1| hypothetical protein BACPEC_01007 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992018|gb|EEC58022.1| hypothetical protein BACPEC_01007 [Bacteroides pectinophilus ATCC
           43243]
          Length = 395

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/376 (26%), Positives = 170/376 (45%), Gaps = 27/376 (7%)

Query: 9   LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             I+L  ++ N  ++ AL+    +  AVVK +AYG G   +A A+ +  V  + V +VEE
Sbjct: 13  ADINLDNIEYNVRALMALTKPGTKAMAVVKADAYGHGDVAVAKAVNDI-VDAYAVATVEE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G+ LR    +  I VL  +       +    L IPV  +       +  ++ G +    +
Sbjct: 72  GINLRQNGIEKMILVLGYVDEMHYDQVIRYALSIPVFDTEMAKKMSAAAVAAGENIRCHV 131

Query: 127 QVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +VDTG +R+GL   +  +             +  I +H A AD+        Q E F+T 
Sbjct: 132 KVDTGMHRIGLRPDDDGIKTVLALAKYDGLDVEGIFTHFATADEKDKTAAYRQFELFKTF 191

Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           +   +           ++S+GI+  P+ +  + R GI++YG       SH +   +  + 
Sbjct: 192 VEKLENEGMHFKYRHCSNSAGIIDMPDVNMDMVRLGIAMYGMYPSEEVSHDVVELKPAIE 251

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++ + +++    GE VSY G  +  R + +A    GY DGYP +LS             
Sbjct: 252 LKSSVTMVKTIQPGERVSYNGTFEAKRVTRLATIETGYGDGYPRSLSN-----------K 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I+G   PI G++ MD  M D+TD   +   D + + G D    I ++++A  +GT 
Sbjct: 301 GYVLIRGRKAPITGRVCMDQFMVDVTDIPDVGRLDEVTLIGRDGNEYISVEEIAALAGTF 360

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+ +  +G R  + Y
Sbjct: 361 NYEFVCDLGKRIPRNY 376


>gi|217957812|ref|YP_002336356.1| alanine racemase [Bacillus cereus AH187]
 gi|222094012|ref|YP_002528063.1| alanine racemase [Bacillus cereus Q1]
 gi|229137081|ref|ZP_04265705.1| Alanine racemase [Bacillus cereus BDRD-ST26]
 gi|217063401|gb|ACJ77651.1| alanine racemase [Bacillus cereus AH187]
 gi|221238061|gb|ACM10771.1| alanine racemase [Bacillus cereus Q1]
 gi|228646388|gb|EEL02598.1| Alanine racemase [Bacillus cereus BDRD-ST26]
          Length = 389

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 158/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CKVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|289665503|ref|ZP_06487084.1| alanine racemase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 366

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 172/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQALIDLEALRHNYRLAKQL-GGSKALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V ++  Q+   ++  S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG          +  ++ V+T  +
Sbjct: 178 ALTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFRQDTENTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R+   GE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRELPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGKVCPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVSPLAAQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRVPRVYV 355


>gi|89099495|ref|ZP_01172371.1| alanine racemase [Bacillus sp. NRRL B-14911]
 gi|89085881|gb|EAR65006.1| alanine racemase [Bacillus sp. NRRL B-14911]
          Length = 392

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/376 (27%), Positives = 162/376 (43%), Gaps = 31/376 (8%)

Query: 8   RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +I+L  +K N  SM  L  G+ +  AVVK N YG G  + A A   AG     V  ++
Sbjct: 14  WAEINLDHIKENVKSMKKLLPGDVKLFAVVKANGYGHGDIQAAGAALEAGADCLAVAFLD 73

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPY 124
           E + LR    +A I VL    P    +    ++   +    Q+ +  K + C  G    +
Sbjct: 74  EALSLRQRGIEAPILVLGASRPEDAPLAASADITLTVF---QVNWLEKALPCLQGKRLTF 130

Query: 125 ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            +++DTG  R+G+    E L     +  +   +L  I +H A AD+        QL RFR
Sbjct: 131 HVKLDTGMGRIGVREKDELLAIEKLAGREDAFELQGIYTHFATADELDDSYFREQLGRFR 190

Query: 184 TLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVT 237
            ++S    +      ++S+  L  P   F   R GIS+YG T           P++   +
Sbjct: 191 EMLSWLGKVPEMVHTSNSAASLRFPEARFNAVRMGISMYGLTPSPEIEHELPFPLKEAFS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             ARI+ ++K   G+ VSYG   +   D  I    IGYADG+   L G            
Sbjct: 251 LHARIVHVKKLQKGDKVSYGATYEAEGDEWIGTLPIGYADGWIRRLQGQ----------- 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            +  + G  VPI+G+I MD  M  +     +E G    + G      I ++++A    T 
Sbjct: 300 -EVLVNGSRVPIVGRICMDQCMIRLP--YGVEPGTAATLIGAQGDSMISVNEIAAKLETI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   I +R  + Y
Sbjct: 357 NYEVTCMISSRVPRVY 372


>gi|291529405|emb|CBK94991.1| alanine racemase [Eubacterium rectale M104/1]
          Length = 376

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 169/385 (43%), Gaps = 28/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58
           M  N  +R  IDL A+  N  SM N L      AAVVK + YG G E ++  L     + 
Sbjct: 1   MAINR-IRADIDLDAILYNMESMHNKLKPGTMMAAVVKADGYGHGAEAVSEVLEPLPYLW 59

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
            + V +  E ++L     +  I +L    P Q + I D ++ P + +       S++  +
Sbjct: 60  GYAVATSNEAMELIAAGRKKPILILGLSFPEQFEEIVDNDVRPAVCTYETAKELSRIAVA 119

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    +++DTG  R+G  + +E+ D            +  I +H A AD+ S     
Sbjct: 120 KNKTCKIHIKIDTGMCRIGFQVTEESADIIAQIAKLPNIMIEGIFTHFARADELSKEPAF 179

Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229
            Q + F+ +I+  +  E        ++S+GI+  P  +  + R GI+LYG          
Sbjct: 180 EQFDLFKRMIALVEAREVEIPIKHCSNSAGIVEIPECNMDMVRAGITLYGLWPSEEVDKS 239

Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V++  +R+  +++   G  +SYGG   +     IA   +GY DGY   LS    
Sbjct: 240 KISLKPVMSLHSRVAYVKELEPGRHISYGGTFTVEHPMRIATVPVGYGDGYSRGLSN--- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   IKG   PI G++ MD  M D+TD   +++GD + + G D    I ++
Sbjct: 297 --------KGWVLIKGKKAPICGRVCMDQFMVDVTDIPDVKIGDAVTLLGKDGDETITME 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            +   SG  NY+    I  R  + Y
Sbjct: 349 QLGELSGRFNYEFACLITPRVPRIY 373


>gi|148243246|ref|YP_001228403.1| alanine racemase [Synechococcus sp. RCC307]
 gi|147851556|emb|CAK29050.1| Alanine racemase [Synechococcus sp. RCC307]
          Length = 395

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 176/373 (47%), Gaps = 24/373 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
              +   L+ID  A++ N   +  +LS      AVVK + YG G   +A A  + G   F
Sbjct: 18  QPQQRAWLEIDRDAIRYNTAQLKGSLSPGCALMAVVKADGYGHGAVTVAEAALDGGASSF 77

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSC 118
            V ++ EG++LR    +A I VL  +  P + +      L P ISS+ Q    S + ++ 
Sbjct: 78  GVATLAEGIELRQAGIEAPILVLGNLQQPEEFRCCLHWQLSPTISSLRQGLIGSNVGVAG 137

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G      L++DTG  RLG+  Q+               ++ + SHLA AD+P   +N+ Q
Sbjct: 138 GKPLLAHLKLDTGMARLGIDWQQGPKLLEELQQLDGLSIAGVYSHLADADNPDGLLNATQ 197

Query: 179 LERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPM 232
            ERF  ++  +  +E       LA+S+G L  P  H+ + R G+SLYG +   + K  P+
Sbjct: 198 QERFEAVLRRFHELELKPGLRHLANSAGTLSSPELHYDMVRVGLSLYGHSPAAHLKQLPL 257

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  A++ L+R   AG  VSYG Q   TR S +AV  IGYADG    LSG       
Sbjct: 258 RPAMSVHAKVTLLRDVPAGAGVSYGHQFHTTRPSRLAVLGIGYADGVSRRLSGQM----- 312

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                 +   +G  +P +G ITMD  + D TD   +++GD + + G      I     + 
Sbjct: 313 ------EVLAEGRRLPQVGAITMDQIVIDATDLPELDIGDSVTLLGSSGSETIGPQAWSD 366

Query: 349 ASGTTNYDLLVRI 361
              +  +++L   
Sbjct: 367 VCQSIPWEVLCSF 379


>gi|34580918|ref|ZP_00142398.1| alanine racemase [Rickettsia sibirica 246]
 gi|28262303|gb|EAA25807.1| alanine racemase [Rickettsia sibirica 246]
          Length = 355

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 183/365 (50%), Gaps = 21/365 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL  A  + FFV S EEG
Sbjct: 6   VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEANCRHFFVASSEEG 65

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            ++  ++ASLA+S GI LG +YHF L RPG +LYG              VT +A II ++
Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPLTKNP------VTLKAPIIHLQ 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                  + Y       RDS+IA   +GYADG+    S             G+ FI    
Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRS 288

Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VPI+G+++MD+   D+TD    E+  G   +I G     D +A   GT  Y++L  +G+R
Sbjct: 289 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSR 348

Query: 365 YAKFY 369
           Y + Y
Sbjct: 349 YKRKY 353


>gi|229089375|ref|ZP_04220650.1| Alanine racemase [Bacillus cereus Rock3-42]
 gi|228693956|gb|EEL47644.1| Alanine racemase [Bacillus cereus Rock3-42]
          Length = 389

 Score =  380 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 158/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGLSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|291525106|emb|CBK90693.1| alanine racemase [Eubacterium rectale DSM 17629]
          Length = 376

 Score =  380 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 169/385 (43%), Gaps = 28/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58
           M  N  +R  IDL A+  N  SM N L      AAVVK + YG G E ++  L     + 
Sbjct: 1   MAINR-IRADIDLDAILYNMESMHNKLKPGTMMAAVVKADGYGHGAEAVSEILEPLPYLW 59

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
            + V +  E ++L     +  I +L    P Q + I D ++ P + +       S++  +
Sbjct: 60  GYAVATSNEAMELIAAGRKKPILILGLSFPEQFEEIVDNDVRPAVCTYETAKELSRIAVA 119

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    +++DTG  R+G  + +E+ D            +  I +H A AD+ S     
Sbjct: 120 KNKTCKIHIKIDTGMCRIGFQVTEESADIIAQIAKLPNIMIEGIFTHFARADELSKEPAF 179

Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229
            Q + F+ +I+  +  E        ++S+GI+  P  +  + R GI+LYG          
Sbjct: 180 EQFDLFKRMIALVEAREVEIPIKHCSNSAGIVEIPECNMDMVRAGITLYGLWPSEEVDKS 239

Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V++  +R+  +++   G  +SYGG   +     IA   +GY DGY   LS    
Sbjct: 240 KISLKPVMSLHSRVAYVKELEPGRHISYGGTFTVEHPMRIATVPVGYGDGYSRGLSN--- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   IKG   PI G++ MD  M D+TD   +++GD + + G D    I ++
Sbjct: 297 --------KGWVLIKGKKAPICGRVCMDQFMVDVTDIPDVKIGDAVTLLGKDGDETITME 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            +   SG  NY+    I  R  + Y
Sbjct: 349 QLGELSGRFNYEFACLITPRVPRIY 373


>gi|15891641|ref|NP_357313.1| alanine racemase [Agrobacterium tumefaciens str. C58]
 gi|20137303|sp|P58737|ALR2_AGRT5 RecName: Full=Alanine racemase, catabolic
 gi|15160087|gb|AAK90098.1| alanine racemase [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score =  380 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/365 (35%), Positives = 201/365 (55%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++  ++  ++TAAVVK +AYGLG + ++  L+ AG ++FFV  ++E 
Sbjct: 18  LTIDLGALRDNYLTLAGMAPASQTAAVVKADAYGLGADVVSQTLFEAGCRNFFVAHIDEA 77

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           + LR   + +ARIFVL G+ PG E       + PV++S+ Q+  +S      G +   A+
Sbjct: 78  LALRLRLSAKARIFVLNGLQPGNETSCAAMAITPVLNSLEQIAQWSAHARELGKTLTAAV 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG  RLGLS +E    +         +++ ++SHLACAD+P    N+ QL   R   
Sbjct: 138 QIDTGMCRLGLSPEELEILSAKQQLLDGIEIAFVMSHLACADEPDHVSNAAQLAVMRKAA 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + +       ++S GI LG +YH  L RPGI+LYGG       +PM+ VV  +  +I  R
Sbjct: 198 TAFPETPVCFSNSGGIFLGNDYHNALLRPGIALYGGAPSAAGPNPMKPVVRLDVAVIQTR 257

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG LV YGG    +  + +A  A GYADG P +LS             G  +  G  
Sbjct: 258 TVPAGSLVGYGGSFTASVPTRLATIAAGYADGLPRSLSNR-----------GAAWYNGVR 306

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI G+++MD  + DI+      +  G  +Q+ GPD  L+D+A  +GT  Y++L  +G R
Sbjct: 307 LPIAGRVSMDSIILDISALPEGTLTQGSLVQMIGPDQTLEDIAEDAGTIAYEILTGLGRR 366

Query: 365 YAKFY 369
           Y + Y
Sbjct: 367 YRRSY 371


>gi|307823471|ref|ZP_07653700.1| alanine racemase [Methylobacter tundripaludum SV96]
 gi|307735456|gb|EFO06304.1| alanine racemase [Methylobacter tundripaludum SV96]
          Length = 362

 Score =  380 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/362 (27%), Positives = 171/362 (47%), Gaps = 20/362 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ++L A+++N   + + + +A+  AV+K N YG G  +IA AL       F V  V+EG
Sbjct: 7   AVVNLDAVQHNLSKVRSCAPDAKVMAVIKANGYGHGMLRIAEALQQ--ADAFAVARVDEG 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR    + RI VL G    +E   +    L  V+ S+ QL  +      G      L+
Sbjct: 65  IRLRKAGFKHRIAVLEGFTCAEELDELLHYQLDAVVHSLTQLEIFEAETKSGTCA-VWLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G NRLG   +E            L  Q   +++H A ADD +      Q+  F   I
Sbjct: 124 LDSGMNRLGFKAKEFDSVYQRLTQCALVKQPISLMTHFASADDINDDKTLRQINLFNETI 183

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARII 243
           S Y G E S+A+S+GIL          RPG+ L+G +   +   +   ++ V+   +R+I
Sbjct: 184 SGYSG-ERSMANSAGILGWEQSLTDWVRPGVMLHGISPFPDSTGRQLGLRPVMELHSRLI 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +++   G+ V YGG     + + + V AIGY DGYP               +G    + 
Sbjct: 243 AVKQIEVGDTVGYGGSWICEKPTTLGVVAIGYGDGYPR-----------YAKVGTPVLVN 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP++G+++MDM   D+      + GD + ++G  + ++++A  + T  Y L+  +  
Sbjct: 292 GRRVPLIGRVSMDMITVDLETEGHAKPGDLVTLWGEGLPVEEIARCADTIPYTLVCGVTQ 351

Query: 364 RY 365
           R 
Sbjct: 352 RV 353


>gi|256157422|ref|ZP_05455340.1| Alr, alanine racemase [Brucella ceti M490/95/1]
 gi|256253600|ref|ZP_05459136.1| Alr, alanine racemase [Brucella ceti B1/94]
 gi|261220737|ref|ZP_05935018.1| alanine racemase [Brucella ceti B1/94]
 gi|265995910|ref|ZP_06108467.1| alanine racemase [Brucella ceti M490/95/1]
 gi|260919321|gb|EEX85974.1| alanine racemase [Brucella ceti B1/94]
 gi|262550207|gb|EEZ06368.1| alanine racemase [Brucella ceti M490/95/1]
          Length = 399

 Score =  380 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 193/379 (50%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYA G   +LS         
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYAAGLFRSLSN-------- 312

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 370 TIPYEILTALGNRYARVYV 388


>gi|206972274|ref|ZP_03233221.1| alanine racemase [Bacillus cereus AH1134]
 gi|229067995|ref|ZP_04201308.1| Alanine racemase [Bacillus cereus F65185]
 gi|229077594|ref|ZP_04210234.1| Alanine racemase [Bacillus cereus Rock4-2]
 gi|229176832|ref|ZP_04304233.1| Alanine racemase [Bacillus cereus 172560W]
 gi|206732848|gb|EDZ50023.1| alanine racemase [Bacillus cereus AH1134]
 gi|228606640|gb|EEK64060.1| Alanine racemase [Bacillus cereus 172560W]
 gi|228705713|gb|EEL58059.1| Alanine racemase [Bacillus cereus Rock4-2]
 gi|228715133|gb|EEL66996.1| Alanine racemase [Bacillus cereus F65185]
          Length = 389

 Score =  380 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|229172800|ref|ZP_04300355.1| Alanine racemase [Bacillus cereus MM3]
 gi|228610688|gb|EEK67955.1| Alanine racemase [Bacillus cereus MM3]
          Length = 408

 Score =  380 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 163/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A    G+    V  V+
Sbjct: 28  IEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEVGIDQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR       I +L        +     +++  +     L   +++ +         
Sbjct: 88  EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++  K +   +     ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNAAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHAVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  I+ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D++ ++ ++VGD +  +G      I +++VA   GT 
Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEEEIAVEEVADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|323490569|ref|ZP_08095775.1| alanine racemase [Planococcus donghaensis MPA1U2]
 gi|323395835|gb|EGA88675.1| alanine racemase [Planococcus donghaensis MPA1U2]
          Length = 385

 Score =  380 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 168/381 (44%), Gaps = 27/381 (7%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N    +  IDLTA+K+N       SG+A   AVVK +AYG G  ++   +   GV+ 
Sbjct: 1   MVENYRPTKAVIDLTAIKSNLTYFQEKSGDAEVIAVVKADAYGHGVLEVVKTVVAHGVRM 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V + +E + LR       + VL         I    N+I    S+  L+  ++ +   
Sbjct: 61  LAVATPDEALFLRNQGIDTELLVLGATSSQFIPIAQQHNIIVTAISLDWLSMAARHIEQN 120

Query: 120 VS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L+VDTG  R+G+ + E  +      +        I +H A AD+  S + S Q
Sbjct: 121 SDPLKIHLKVDTGMRRIGVQVDEVEEAFGFIADHDF-DFKGIFTHFATADEKDSPLFSQQ 179

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPM 232
           +    T++       ++  +++S+  ++ P+      R GISLYG           +  +
Sbjct: 180 VNAMNTILDKLDDPSVKVHISNSAAAIMHPDLACDAVRIGISLYGIAPSPYVGEEMNFDL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  ++ E  +I ++K  AGE +SYG   +  +D  IA   IGYADG    L G D     
Sbjct: 240 QPALSLETEMIHVKKLKAGETLSYGATYRAEKDEWIATIPIGYADGMLRGLQGQD----- 294

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    +KG  VPI+G+I MD  M  +++  S  +G+ +Q+ G      I +D+ A 
Sbjct: 295 -------VLVKGQRVPIIGRICMDQCMIRLSEKSS--IGEKVQLIGRQGNQQILIDEWAA 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y++   +  R  + Y
Sbjct: 346 KLDTIPYEIPCILTKRVPRVY 366


>gi|289450381|ref|YP_003475805.1| alanine racemase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184928|gb|ADC91353.1| alanine racemase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 386

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 95/383 (24%), Positives = 169/383 (44%), Gaps = 26/383 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           +  +    +I L  L NN  ++ A ++   +   V+K +AYG G    A  + + GV+  
Sbjct: 11  NKRDRCWAEISLANLANNIANIRAAIAPQVKIMGVIKGDAYGHGAVMTARTMIDCGVEYL 70

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCG 119
            V +V+E ++LR    +  I VL      +   I   +L   +  +      S   +   
Sbjct: 71  AVATVDEALELRGNDIKTPILVLGYTDVSRAMDIVANDLTQTVYELTLPEAMSLAAIKLN 130

Query: 120 VSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            +    L+++TG  R+G+   E  ++F    +      +  I +H A AD+  S    +Q
Sbjct: 131 KTAKIHLKIETGMERIGIPADEHLIEFAKKLYALPNVDVEGIFTHFATADEAKSDFVKLQ 190

Query: 179 LERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-- 231
            ERF+        + Y        +S+ IL  P YH  + R G  +YG         P  
Sbjct: 191 FERFKKATEVLATAGYYPRYRHCCNSAAILRYPEYHLDMVRAGGLVYGFVPDFCHVQPGQ 250

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + +++  A+++LI+K   G  + Y  +   +RD  +A  ++GY DG    LS       
Sbjct: 251 YKPLMSLYAKVVLIKKVAKGTSIGYNRRFTASRDMWVATISVGYGDGIARALS------- 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFG----PDIKLDDV 346
                  +  + G+ V  +G I MD+ M DITD +  +++GD + +FG      +  D++
Sbjct: 304 ----EKLQVLLAGHRVRQVGNICMDLCMIDITDIVDQVKLGDQVTVFGAAATNSMTADEL 359

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A   GT NY++ + I  R  +FY
Sbjct: 360 AALQGTINYEITININKRVPRFY 382


>gi|254422201|ref|ZP_05035919.1| alanine racemase [Synechococcus sp. PCC 7335]
 gi|196189690|gb|EDX84654.1| alanine racemase [Synechococcus sp. PCC 7335]
          Length = 399

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/379 (27%), Positives = 171/379 (45%), Gaps = 27/379 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              ++I+LTAL +N   + A L       +VVK +AYG G   +A     AG     V +
Sbjct: 17  RAWVEINLTALAHNVKVLKAMLPKGTDLLSVVKADAYGHGAVMVADVAIAAGTTWLGVAT 76

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           V EG++LR       I V+  ++   + + I   NL PVI +  Q   +S+ L       
Sbjct: 77  VPEGIELRQAGIDVPILVMGAVNDSAEVRAIAHWNLQPVIVNPKQALVFSETLKDQRTPV 136

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +Q+DTG +RLG S Q A++F          +   + SH A AD     V  +Q +RF
Sbjct: 137 QVHIQLDTGMSRLGFSWQRAVEFVRFVRQLPYLETVGLCSHFATADSLDQTVMRLQHDRF 196

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQ 233
           +  I+  K      +   +A+S+  L+ P +H+ + R G++ YG              +Q
Sbjct: 197 KQAIARLKQESLLPVRLHIANSAAALIAPTFHYDMVRMGLATYGLYPAPHLRDKLKVELQ 256

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +ARI  I++  A   VSY  Q    +   IA+  IGYADG P  LS         
Sbjct: 257 PVLELKARITHIKEIDAHTGVSYSYQFIAPKSMKIAIVGIGYADGVPRILSNKM------ 310

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  +    V  +G ITMD  + D++D  S++ GD + + G      +  D+ A  
Sbjct: 311 -----QVVVNEQRVNQIGAITMDQLIIDVSDLESVQEGDIVTLLGRTQYHCLHADEWAEL 365

Query: 350 SGTTNYDLLVRIGTRYAKF 368
           +GT ++++L     R  + 
Sbjct: 366 AGTISWEILCGFKHRLPRV 384


>gi|294624631|ref|ZP_06703303.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292601066|gb|EFF45131.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 366

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 170/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A I +L G     E ++I + +L  V ++  Q+   ++  S      
Sbjct: 60  IEEALELRQAGIGAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG       +      + V+T  +
Sbjct: 178 ALTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTAHTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R   AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGQVCPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVGALAAQCNVSAYQLLCG 346

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 347 L-KRVPRVY 354


>gi|328948124|ref|YP_004365461.1| Alanine racemase [Treponema succinifaciens DSM 2489]
 gi|328448448|gb|AEB14164.1| Alanine racemase [Treponema succinifaciens DSM 2489]
          Length = 383

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/391 (25%), Positives = 151/391 (38%), Gaps = 35/391 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R  I L  LKNN   +   L    +    VK +AYG G    A A   AG     V 
Sbjct: 2   RATRALIHLGNLKNNIIEIKKCLKPETKMCVAVKADAYGHGAVPCARAALEAGADYLSVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VS 121
           + EEGV LR     + I +L    P + + +    + P +     +  +S          
Sbjct: 62  TYEEGVVLRNAGIASPILMLSLCSPDEVEEVVSAGITPFVFDEEYIELFSSACKKLGIKK 121

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA---CADDPSSHVNSVQ 178
               L VDTG  R+G    EA +      N     L    +H A   C  +        Q
Sbjct: 122 FEVHLAVDTGMGRIGCLPSEAGNIALKIKNCGNLVLGGTATHFALSDCVSEKGKSYTKFQ 181

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKI------- 226
            E F   I++ K +         A+S+  L  P+ H  + RPGI +YG            
Sbjct: 182 FENFLEAINNIKSVGINPGICHCANSATTLDSPDMHLDMVRPGIIVYGYYADEVSKEYLV 241

Query: 227 --NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
              K+  ++ V+T E+ +  IRK   G+   YG + +   D+ + V  IGYADG+    S
Sbjct: 242 SKGKNVELKPVMTLESCVSSIRKFEKGKFAGYGCRWEAKSDTNVGVVPIGYADGWFRRFS 301

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                       G K  + G   PI G+I MD  M D+    + +  D   +FG      
Sbjct: 302 ----------ECGVKVAVNGKNYPICGRICMDQCMIDLGADCTAKRWDKAVLFGDSSDGA 351

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
               DD+A  +GT +Y++   I  R  + + 
Sbjct: 352 LQTADDIAHLTGTISYEITCGISKRVPRVFV 382


>gi|229101047|ref|ZP_04231827.1| Alanine racemase [Bacillus cereus Rock3-28]
 gi|228682367|gb|EEL36464.1| Alanine racemase [Bacillus cereus Rock3-28]
          Length = 389

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEASFYRDTWVEVDLDAIYNNITHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDINVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           +      + +  D+G  R+G+  + E  +F  +       +L  + +H A AD+  +   
Sbjct: 121 NGSSIMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVDGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|325979040|ref|YP_004288756.1| alanine racemase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|325178968|emb|CBZ49012.1| Alanine racemase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 368

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 175/378 (46%), Gaps = 27/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N  ++ A +  + +  AVVK NAYG G   +A A+++  V  F V
Sbjct: 6   HRPTKAVIDLDAICQNIDAVKANIPQDKKAFAVVKANAYGHGATNVAQAIHHL-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  I P +  +  D ++   ++S   L   ++        
Sbjct: 65  SNIDEALELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGISLAGL 124

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G  R+G+ SL EA +   N   K    ++ I +H A AD+      + QLE 
Sbjct: 125 DVHLKVDSGMGRIGVRSLDEAENVIAN-LKKSGANVAGIFTHFATADEADDTKFNEQLEF 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVV 236
           F  L+++     A    ++S+  +      F L R GI +YG      +++  +P++  +
Sbjct: 184 FTNLVNNLSDKPAIVHASNSATSIWHSETIFNLVRLGIVMYGLNPSGTELDLPYPLKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+ ++ ++   AG  V YG      ++  IA   IGYADG+   L G           
Sbjct: 244 SLESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G    I+G+++MD     + + L   +G  + + G +    I   D+A   GT
Sbjct: 295 ---VLVNGEFCEIVGRVSMDQITIRLPEKLP--IGTKVTLIGQEGSKVISATDLAQKRGT 349

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY++L  +  R  + Y+
Sbjct: 350 INYEVLCLLSDRIPRVYS 367


>gi|322388802|ref|ZP_08062399.1| alanine racemase [Streptococcus infantis ATCC 700779]
 gi|321140421|gb|EFX35929.1| alanine racemase [Streptococcus infantis ATCC 700779]
          Length = 367

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 156/381 (40%), Gaps = 27/381 (7%)

Query: 1   MHS--NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGV 57
           M +  +   +  IDL A++ N   M   +       AVVK NAYG G   +A       V
Sbjct: 1   MKTSPHRPTKALIDLGAIRYNIQQMGEHTPKDALKWAVVKANAYGHGAVAVA-TAIQGDV 59

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V++++E ++LR      +I +L         +  +  +   ++ +  +       S
Sbjct: 60  DGFCVSNIDEALELRQAGITKKILILGVSEVESLSLAKEYAITLTVAGLEWIENLLATES 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                   L++D+G  R+G               +    +  I +H A AD+ S    + 
Sbjct: 120 DLSGLTVHLKIDSGMGRIGFRSTSEAAQAQALLKEHGANVEGIFTHFATADEESDSYFNQ 179

Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
           QLE F+ +I+  + +      ++S+  L      F   R G S+YG       +   + +
Sbjct: 180 QLECFKEIIAGLQEVPELVHASNSATTLWHAETIFNAVRMGDSMYGLNPSGQVLELPYKL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T E+ I+ ++K  AG  + YG   +   + +IA   IGYADG+   +         
Sbjct: 240 KPALTLESAIVHVKKVPAGACMGYGATYQADSEQVIATLPIGYADGWTRDMQNFS----- 294

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G + PI+G+++MD     +     +  G  + + G     +I   DVA+
Sbjct: 295 -------VLVDGQLCPIVGRVSMDQITIRLPKFYPL--GTKVTLIGSDGDKEITATDVAV 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+++  +  R  + Y
Sbjct: 346 YRGTINYEVVCLLSDRIPREY 366


>gi|229094951|ref|ZP_04225953.1| Alanine racemase [Bacillus cereus Rock3-29]
 gi|229113905|ref|ZP_04243337.1| Alanine racemase [Bacillus cereus Rock1-3]
 gi|228669546|gb|EEL24956.1| Alanine racemase [Bacillus cereus Rock1-3]
 gi|228688464|gb|EEL42340.1| Alanine racemase [Bacillus cereus Rock3-29]
          Length = 389

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEASFYRDTWVEVDLDAIYNNITHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDINVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVDGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|166031784|ref|ZP_02234613.1| hypothetical protein DORFOR_01485 [Dorea formicigenerans ATCC
           27755]
 gi|166028237|gb|EDR46994.1| hypothetical protein DORFOR_01485 [Dorea formicigenerans ATCC
           27755]
          Length = 389

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 97/383 (25%), Positives = 170/383 (44%), Gaps = 29/383 (7%)

Query: 5   EFLRL--KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDF 60
           ++ R+  ++DL A+  N+  M A +    +  AV+K + YG G  +IA  L     +  +
Sbjct: 3   QYSRVCERVDLDAIFYNFQMMKANIKDGVQMIAVIKTDGYGHGAVQIARLLEPVDYIWGY 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119
            V +++E V LR    +  I VL  I P Q + + +  +     +V      S L    G
Sbjct: 63  AVATLDEAVVLRKNEIKKPILVLGCIFPDQWEAMIENEVRMTTYTVEMAKGVSNLAVKMG 122

Query: 120 VSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 +++DTG +RLG  + E  +D           +L  + +H A AD+       VQ
Sbjct: 123 KDAYIHIKLDTGMSRLGFQIHEDSVDAIEEISKMPGLKLEGMFTHFAKADETDKAYTDVQ 182

Query: 179 LERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSH 230
           + ++  +    K           ++S+GI+     +  L R GIS+YG         K+ 
Sbjct: 183 IGKYNYMRDELKKRGVTFPIYHCSNSAGIIDIKKANMDLVRAGISIYGLYPSEEVEKKNV 242

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P++  +   + +  ++    G  VSYGG     +++ +A   +GY DGYP +LS      
Sbjct: 243 PLRPAMELISHVSYVKTVPEGTPVSYGGTYVTEKETSLATIPVGYGDGYPRSLSN----- 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                  G   I G   PI G++ MD  M D+TD   ++ GD + + G D    + ++ +
Sbjct: 298 ------KGYVLIHGKKAPIRGRVCMDQFMVDVTDIPDVKFGDKVTLVGKDGDEFLPVETL 351

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           +  SG  NY+ +  +G R  + Y
Sbjct: 352 SDLSGRFNYEFVCDLGKRIPREY 374


>gi|324324251|gb|ADY19511.1| alanine racemase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 389

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +       AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSGVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPLKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CKVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|284033912|ref|YP_003383843.1| alanine racemase [Kribbella flavida DSM 17836]
 gi|283813205|gb|ADB35044.1| alanine racemase [Kribbella flavida DSM 17836]
          Length = 375

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/383 (25%), Positives = 167/383 (43%), Gaps = 31/383 (8%)

Query: 6   FLRLK--IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            +R +  +DL A+++N  ++ A   +A    VVK + YG G   +A A   AG     V 
Sbjct: 1   MVRAEAVVDLAAIRHNVAALRARLSSAELMTVVKADGYGHGMAPVARAARQAGADWIGVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            +EE ++LR       IF                ++     +  ++   +  ++      
Sbjct: 61  VLEEALELRAAGDNGPIFCWLTTPGEPLARAIANDIDLSAGAPWEIDELAAGVTD-RPAR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLE 180
             L++DTG  R G   +E       +  ++      ++ I SHLA +D+P S VN  Q+ 
Sbjct: 120 VHLKIDTGLGRGGAVPEEWPTLIRAALKEQKTGRIVITGIWSHLASSDEPKSPVNEAQVA 179

Query: 181 RFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231
            F + ++  + +        LA+S G L  P  HF L RPGI+ YG +       +    
Sbjct: 180 TFESAVAVAESLGVDPGFKHLANSGGTLALPETHFDLVRPGIATYGLSPFGHALPSAELG 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T  AR+ + ++  AG  VSYG      + S + +  +GY DG P   S       
Sbjct: 240 LRPAMTLRARLAMAKRVPAGAGVSYGLTWTAPKPSTLGLVPLGYGDGLPRHASN------ 293

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                G    + G    ++G+I MD  + ++ D      GD + +FGP    +   DD A
Sbjct: 294 -----GAPVQVHGIRRSVVGRICMDQCVVNLDDG-DAAAGDEVVLFGPGDHGEPTADDWA 347

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
            A+GT NY+++ R+G R  + Y 
Sbjct: 348 DAAGTINYEIVTRLGPRIPRRYV 370


>gi|210621786|ref|ZP_03292815.1| hypothetical protein CLOHIR_00760 [Clostridium hiranonis DSM 13275]
 gi|210154550|gb|EEA85556.1| hypothetical protein CLOHIR_00760 [Clostridium hiranonis DSM 13275]
          Length = 388

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 165/375 (44%), Gaps = 24/375 (6%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              +IDL A K N  S+   L+   +   +VK +AYG G  +IA  L    V+   V+  
Sbjct: 11  AWAEIDLDAFKRNLKSIRKVLNNGEKICGIVKADAYGHGSVEIAKTLEENDVEYLAVSRA 70

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPY 124
           EE ++LR    +  I +L      + + I   +++  I S+   +          +    
Sbjct: 71  EEAMELRRKGLELPILILGYTPEQRYRDIIRNDVMFTIYSMEDAVKLNEAAEELEMDAKV 130

Query: 125 ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            +++DTG NRLG  + +E++             +  I +H A AD+       +Q E+F+
Sbjct: 131 HIKIDTGMNRLGFKVTEESICEIKKISEMDRISIKGIFTHFAAADEVDKSFTEMQGEKFK 190

Query: 184 TLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTV 235
            +++  K  G+E      A+S+ I+   +  F + R GI +YG     +   +  P++ V
Sbjct: 191 YMLNRLKEEGVEVPLVHAANSAAIVDCDDLKFDMVRAGIIMYGCYPSDDIMKERVPVEPV 250

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T + R+  I+    GE +SYG   +      IA  AIGYADG+                
Sbjct: 251 MTIKTRVSHIKTIEPGEKISYGCTYEAKEKERIATLAIGYADGFVRGRKNP--------- 301

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTN 354
              K  I G    ++G+I MD  M  I     I+VGD   +FG   + + + A   GT +
Sbjct: 302 ---KVCINGKDYEVVGRICMDQCMIKIGMDDDIKVGDEAVVFGKGGVSISEFAEDCGTIS 358

Query: 355 YDLLVRIGTRYAKFY 369
           ++++  I  R  + +
Sbjct: 359 HEIMCNISRRIPRVF 373


>gi|116748009|ref|YP_844696.1| alanine racemase [Syntrophobacter fumaroxidans MPOB]
 gi|189027394|sp|A0LFQ9|ALR_SYNFM RecName: Full=Alanine racemase
 gi|116697073|gb|ABK16261.1| alanine racemase [Syntrophobacter fumaroxidans MPOB]
          Length = 375

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/368 (27%), Positives = 171/368 (46%), Gaps = 23/368 (6%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            ++IDL AL++N+      L+  +R   VVK +AYG G   +A  L   G     V+   
Sbjct: 5   WVEIDLAALRHNYSRAKERLAPGSRILGVVKSDAYGHGMIPVARELVACGASFLAVSKHW 64

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125
           E V LR    +  I  L G+ P +        + PVI  +      S    S   +    
Sbjct: 65  EAVDLRAAGIRLPILCLLGVEPSEMAEAIRNEIRPVIYRIDHARRLSDTARSLNATATVH 124

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG  RLG+  +    F +        +L  ++SH A AD+     +++QL RFR  
Sbjct: 125 VKLDTGMGRLGIPCRHLEAFLNELLTLPAIRLEGVLSHFASADEADKTSSTLQLTRFREA 184

Query: 186 ISHY--KGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVTAE 239
           ++    +G+     +A+S+G+L  P  HF L RPGI LYG    +   K   ++ V+T +
Sbjct: 185 MALLSARGLSVLGHIANSAGLLDLPQAHFDLARPGIMLYGSPPSLELHKPADLRPVMTFK 244

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++   AG+ + YGG         IA   +GY DGYP  LS             G+
Sbjct: 245 SKIIQLKDVQAGQPIGYGGTFVTAAPGRIATIPVGYDDGYPRLLSNR-----------GR 293

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             ++G   P++G+++M+M   D+T   S    D + + G      +  +++A   GT +Y
Sbjct: 294 VLVRGMSAPVVGRVSMNMITADVTHIPSAREDDEVVLLGAQGTERVTAEEIAQLCGTISY 353

Query: 356 DLLVRIGT 363
           ++   IG 
Sbjct: 354 EIYCSIGR 361


>gi|30260428|ref|NP_842805.1| alanine racemase [Bacillus anthracis str. Ames]
 gi|47525509|ref|YP_016858.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183271|ref|YP_026523.1| alanine racemase [Bacillus anthracis str. Sterne]
 gi|65317680|ref|ZP_00390639.1| COG0787: Alanine racemase [Bacillus anthracis str. A2012]
 gi|165871589|ref|ZP_02216235.1| alanine racemase [Bacillus anthracis str. A0488]
 gi|167634186|ref|ZP_02392508.1| alanine racemase [Bacillus anthracis str. A0442]
 gi|167640352|ref|ZP_02398617.1| alanine racemase [Bacillus anthracis str. A0193]
 gi|170687737|ref|ZP_02878952.1| alanine racemase [Bacillus anthracis str. A0465]
 gi|170707904|ref|ZP_02898354.1| alanine racemase [Bacillus anthracis str. A0389]
 gi|177653374|ref|ZP_02935584.1| alanine racemase [Bacillus anthracis str. A0174]
 gi|190567419|ref|ZP_03020333.1| alanine racemase [Bacillus anthracis Tsiankovskii-I]
 gi|227812920|ref|YP_002812929.1| alanine racemase [Bacillus anthracis str. CDC 684]
 gi|229599992|ref|YP_002864879.1| alanine racemase [Bacillus anthracis str. A0248]
 gi|254686594|ref|ZP_05150453.1| alanine racemase [Bacillus anthracis str. CNEVA-9066]
 gi|254723566|ref|ZP_05185353.1| alanine racemase [Bacillus anthracis str. A1055]
 gi|254734928|ref|ZP_05192640.1| alanine racemase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739713|ref|ZP_05197406.1| alanine racemase [Bacillus anthracis str. Kruger B]
 gi|254754916|ref|ZP_05206951.1| alanine racemase [Bacillus anthracis str. Vollum]
 gi|254756959|ref|ZP_05208987.1| alanine racemase [Bacillus anthracis str. Australia 94]
 gi|30253749|gb|AAP24291.1| alanine racemase, spore-specific [Bacillus anthracis str. Ames]
 gi|47500657|gb|AAT29333.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177198|gb|AAT52574.1| alanine racemase [Bacillus anthracis str. Sterne]
 gi|164712693|gb|EDR18224.1| alanine racemase [Bacillus anthracis str. A0488]
 gi|167511754|gb|EDR87135.1| alanine racemase [Bacillus anthracis str. A0193]
 gi|167530500|gb|EDR93215.1| alanine racemase [Bacillus anthracis str. A0442]
 gi|170127262|gb|EDS96139.1| alanine racemase [Bacillus anthracis str. A0389]
 gi|170668264|gb|EDT19012.1| alanine racemase [Bacillus anthracis str. A0465]
 gi|172081414|gb|EDT66487.1| alanine racemase [Bacillus anthracis str. A0174]
 gi|190561546|gb|EDV15517.1| alanine racemase [Bacillus anthracis Tsiankovskii-I]
 gi|227006546|gb|ACP16289.1| alanine racemase [Bacillus anthracis str. CDC 684]
 gi|229264400|gb|ACQ46037.1| alanine racemase [Bacillus anthracis str. A0248]
          Length = 389

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 161/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKIALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|296330975|ref|ZP_06873450.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674493|ref|YP_003866165.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151980|gb|EFG92854.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412737|gb|ADM37856.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 394

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 171/384 (44%), Gaps = 30/384 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + ++++L A+K N  ++     + ++  AVVK N YG G  ++A      G  +  V 
Sbjct: 6   REVWIEVNLDAIKKNLRAIRRHIPHKSKIMAVVKANGYGHGSVEVARHALEHGASELAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--- 120
           SVEEG+ LR     A I VL        K     N+      V  +   ++++       
Sbjct: 66  SVEEGIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASTD 125

Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+   +E L         K  + + I +H + AD+  + +  +Q 
Sbjct: 126 RLAIHINVDTGMGRLGVRTKKELLAVVKALKASKSLRWTGIFTHFSTADEADTTLTKLQH 185

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230
           E+F + +S  K  GIE     +++++  +  P +   + R GI LYG             
Sbjct: 186 EKFISFLSFLKNQGIELPTVHMSNTAAAIAFPEFSADMIRLGIGLYGLYPSTYIKQLNLV 245

Query: 231 PMQTVVTAEARIILIRKAL-AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            ++  ++ +ARI  ++        +SYG       D +IA   IGYADGY  TLS     
Sbjct: 246 KLEPALSLKARIAYVKTMRTEPRTISYGATYIAEPDEVIATLPIGYADGYSRTLSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  VP+ G++TMDM M  + +S   + GD + I+G     +I +D+
Sbjct: 303 --------GFVLHRGKRVPLAGRVTMDMIMVSLGESGEGKQGDEVVIYGQQKGAEISVDE 354

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA    T NY+++  +  R  +FY
Sbjct: 355 VAEMLNTINYEVVSTLSRRIPRFY 378


>gi|228950772|ref|ZP_04112901.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|89475552|gb|ABD73308.1| alanine racemase [Bacillus thuringiensis serovar kurstaki]
 gi|228808912|gb|EEM55402.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 389

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKAEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|257438081|ref|ZP_05613836.1| alanine racemase [Faecalibacterium prausnitzii A2-165]
 gi|257199412|gb|EEU97696.1| alanine racemase [Faecalibacterium prausnitzii A2-165]
          Length = 401

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 163/396 (41%), Gaps = 38/396 (9%)

Query: 1   MHSNEF---LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M    F   +  +IDL AL+ N+ ++   +G+    AVVK ++YG G  + A      G 
Sbjct: 1   MQMQNFEKHVWAEIDLDALRANFRTVKQRAGSLPLCAVVKADSYGHGAVQCARVFAQEGA 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116
               V+ + E ++LR       I +L  + P     +   ++     S+PQ    S+   
Sbjct: 61  SWLAVSCLAEALQLRRSGQTLPILILGHVQPAYAAALIRNDITAACYSLPQAQALSEAAQ 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN----KKLGQLSLIISHLACADDPSS 172
           + G      L VDTG  R+G +L+   D               +++ +  H + ADD + 
Sbjct: 121 AAGGRVKVHLAVDTGMGRIGFALRTDFDAAIAEAIAACTLPGLEMTGLFQHFSVADDTAE 180

Query: 173 H---VNSVQLERFRTLISHY------KGIEASLASSSGILLGPNY------HFQLTRPGI 217
                 + Q   F    S         GI     +S+G++L P++         + RPGI
Sbjct: 181 ENIAYTAEQHRLFVQACSALTAAGHEPGI-VHCDNSAGVMLHPDWPEGLPRAHCMARPGI 239

Query: 218 SLYGGTDKINKSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
            LYG            + V+  +  + +++    G+  SYG +    R + +A    GYA
Sbjct: 240 ILYGFDPSDEVRFGLFRPVMKLKTVVSMVKVLQPGQSTSYGRRFTAERPTPVATLCTGYA 299

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQ 335
           DGYP  LS             G   I G   P+LG++ MD  M D++     ++ GD   
Sbjct: 300 DGYPRQLS----------CGKGIVEIHGTPCPVLGRVCMDQMMVDLSAVPGTVQEGDEAI 349

Query: 336 IFGPDI--KLDDVALASGTTNYDLLVRIGTRYAKFY 369
           ++G  +    +D+A  + T  Y++L  +  R  + Y
Sbjct: 350 LWGGTVSDSAEDIAHKTDTITYEVLCGVSRRVPRVY 385


>gi|293401062|ref|ZP_06645207.1| alanine racemase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306088|gb|EFE47332.1| alanine racemase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 382

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/388 (27%), Positives = 171/388 (44%), Gaps = 31/388 (7%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           S+    L+IDL+ + +N   +  L  +  +  A+VK NAYG G    A  L   G+  F 
Sbjct: 4   SDTRAWLEIDLSKISHNVKEIQKLLPSTSKIMAIVKANAYGHGDVACAKELSRCGIDFFG 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGV 120
           V+SV+EG+ LR    +  I +L    P     +   +LI    S+      +      GV
Sbjct: 64  VSSVDEGISLREGGIREPILILGYTPPVHFHQVIQHDLIQTFLSLDYAKKANAWCKEHGV 123

Query: 121 SHPYALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACA---DDPSSHV 174
                ++VDTG +RLG+  Q+    ++     ++     +  I SH + +   D+ +   
Sbjct: 124 IMHGHVKVDTGMSRLGIITQQQDYRIEEVKEVYHLPHIAVDGIFSHFSVSDGLDEDNKAY 183

Query: 175 NSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              Q+  F  ++   +  GI+     L +S GIL  P+  +   RPG+   G T      
Sbjct: 184 TRKQIMLFDQVLKDLEDAGIDVGIRHLQNSYGILNYPDLKYDYVRPGLLFLGATSDDAID 243

Query: 230 ----HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                  Q ++  +A I +++    G  VSYG      R S IA  +IGYADGYP ++S 
Sbjct: 244 TITHPDFQPIMQLKANISMVKTIQPGVCVSYGRHFTSERISRIATVSIGYADGYPRSVSN 303

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
                      G    + G  VPI+G I MD  M D+TD   ++ GD + +FG D    +
Sbjct: 304 ----------KGACALLHGKRVPIIGNICMDQMMLDVTDIEHVKEGDVVTLFGCDGDEKL 353

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +D++   + T N +    +  R  + Y
Sbjct: 354 PIDELTRLAQTINNETFCWMSARLPRIY 381


>gi|255527458|ref|ZP_05394329.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|296186051|ref|ZP_06854456.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|255508838|gb|EET85207.1| alanine racemase [Clostridium carboxidivorans P7]
 gi|296049319|gb|EFG88748.1| alanine racemase [Clostridium carboxidivorans P7]
          Length = 394

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 165/386 (42%), Gaps = 33/386 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
               +I++  + +N   +  ++ +    +VVK +AYG G  ++AP L   G     V  +
Sbjct: 7   PAWAEINIDNVIHNIKEIRRVAKSKEIISVVKADAYGHGAVELAPILLENGADRLAVALL 66

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-----SVPQLTFYSKL----M 116
            E ++LR    +A I +         K I   N   VI+     +V    +  KL     
Sbjct: 67  SEALQLRKSGIKAPILIFGYTPLKYGKDIIHNNAEDVINNELEVTVLSYDYAKKLSKVAK 126

Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +    + VDTG  R+G     ++++  +         +  + SH + +D+ S    
Sbjct: 127 KLNKNVKIHINVDTGMGRIGFLPTTQSVEDIYKISQLPNIIIEGLYSHFSTSDEKSKSYA 186

Query: 176 SVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           + Q +R+       +  +       +A+S+ ++  P  H    RPGI+ YG     + +H
Sbjct: 187 NKQFKRYLDFYERLEKKDIRINIKHIANSAALIDLPYTHLDAVRPGIANYGYYPSEDVNH 246

Query: 231 PM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            +   +  +T +  ++  R   AG  + YG   +  R S I    IGYADGY   LS + 
Sbjct: 247 DIIKLKPTMTLKCNVVASRTLKAGSYIGYGRTFRTERASRIVTLGIGYADGYDRRLSNV- 305

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KL 343
                     G+  +KG   PI+G+I MDM M D+TD   I+V D + + G  +     +
Sbjct: 306 ----------GEIVVKGKAAPIVGRICMDMCMSDVTDIGDIKVSDEVILMGESLSEKTTV 355

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +++A  +GT   ++   I  R  + Y
Sbjct: 356 ENIAKLTGTIPQEVTSNISKRVPRHY 381


>gi|319648697|ref|ZP_08002908.1| alanine racemase [Bacillus sp. BT1B_CT2]
 gi|317389116|gb|EFV69932.1| alanine racemase [Bacillus sp. BT1B_CT2]
          Length = 398

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 158/385 (41%), Gaps = 30/385 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R    +IDLTALK N  +M    G +    AVVK NAYG G  ++A A    G
Sbjct: 10  MSLKPFYRKTWAEIDLTALKENVRNMKRHIGEHVHLMAVVKANAYGHGDAQVAKAALAEG 69

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKL 115
                V  ++E + LR    +  I VL  + P    I  +  +I    SV         L
Sbjct: 70  ASILAVALLDEALSLRAQGIEEPILVLGAVPPEYASIAAEKRIIVTGYSVGWLKDVLGFL 129

Query: 116 MSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                   Y L++DTG  RLG    +E  +    + +      + + +H A AD+  +  
Sbjct: 130 NEAEAPLEYHLKIDTGMGRLGCKTEEEIKEMMEMTESSDKLNCTGVFTHFATADEKDTDY 189

Query: 175 NSVQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
            ++QL+RF+ LIS      +    ++S+  L      F   R GI +YG           
Sbjct: 190 FNMQLDRFKELISPLPLDRLMVHSSNSAAGLRFREQLFNAVRFGIGMYGLAPSTEIKDEL 249

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V +    +  ++K   GE VSYG      RD  I    +GYADG+   L+G   
Sbjct: 250 PFRLREVFSLHTELTHVKKIKKGESVSYGATYTAQRDEWIGTVPVGYADGWLRRLAG--- 306

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                     +  I G    I G+I MD  M  + +   +  G  + + G      I +D
Sbjct: 307 ---------TEVLIDGKRQKIAGRICMDQFMISLAEEYPV--GTKVTLIGKQKDEWISVD 355

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++A    T NY++   I +R  + +
Sbjct: 356 EIAQNLQTINYEITCMISSRVPRMF 380


>gi|30018501|ref|NP_830132.1| alanine racemase [Bacillus cereus ATCC 14579]
 gi|218233448|ref|YP_002365079.1| alanine racemase [Bacillus cereus B4264]
 gi|228956674|ref|ZP_04118465.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229041138|ref|ZP_04189897.1| Alanine racemase [Bacillus cereus AH676]
 gi|229107913|ref|ZP_04237544.1| Alanine racemase [Bacillus cereus Rock1-15]
 gi|229125746|ref|ZP_04254775.1| Alanine racemase [Bacillus cereus BDRD-Cer4]
 gi|229143037|ref|ZP_04271474.1| Alanine racemase [Bacillus cereus BDRD-ST24]
 gi|229148639|ref|ZP_04276893.1| Alanine racemase [Bacillus cereus m1550]
 gi|29894041|gb|AAP07333.1| Alanine racemase [Bacillus cereus ATCC 14579]
 gi|218161405|gb|ACK61397.1| alanine racemase [Bacillus cereus B4264]
 gi|228634897|gb|EEK91472.1| Alanine racemase [Bacillus cereus m1550]
 gi|228640426|gb|EEK96819.1| Alanine racemase [Bacillus cereus BDRD-ST24]
 gi|228657719|gb|EEL13528.1| Alanine racemase [Bacillus cereus BDRD-Cer4]
 gi|228675536|gb|EEL30749.1| Alanine racemase [Bacillus cereus Rock1-15]
 gi|228727200|gb|EEL78398.1| Alanine racemase [Bacillus cereus AH676]
 gi|228803012|gb|EEM49839.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 389

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|229188510|ref|ZP_04315554.1| Alanine racemase [Bacillus cereus ATCC 10876]
 gi|228594973|gb|EEK52748.1| Alanine racemase [Bacillus cereus ATCC 10876]
          Length = 389

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|152970855|ref|YP_001335964.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238895366|ref|YP_002920101.1| alanine racemase [Klebsiella pneumoniae NTUH-K2044]
 gi|150955704|gb|ABR77734.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238547683|dbj|BAH64034.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 356

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 163/369 (44%), Gaps = 26/369 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   IDL AL+ N   +   +  +R  AVVK NAYG G  ++  AL       F + +
Sbjct: 3   RPVVASIDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSALSA--ADGFALLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G     E  + D   L   + S  Q+    +         
Sbjct: 61  LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLTTSVHSNWQIKALQQA-KLRAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG   +                   ++SH A A++P   V     E  R
Sbjct: 120 IYLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
            +    +G+    SLA+S+  L  P  HF   RPGI LYG +         +  ++ V+T
Sbjct: 175 RIEQAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II ++    GE + YGG  + T++  I + A GYADGYP                G
Sbjct: 235 LRSEIIGVQNLRPGEAIGYGGLYRTTQEQRIGIVACGYADGYPR-----------VAPSG 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y+L
Sbjct: 284 TPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYEL 343

Query: 358 LVRIGTRYA 366
           +  +  R  
Sbjct: 344 MCALAPRVP 352


>gi|15837454|ref|NP_298142.1| alanine racemase [Xylella fastidiosa 9a5c]
 gi|9105760|gb|AAF83662.1|AE003925_2 alanine racemase [Xylella fastidiosa 9a5c]
          Length = 365

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 175/374 (46%), Gaps = 21/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M S       IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F
Sbjct: 1   MCSVRPAHAVIDLDALRHNYRFARRLGGG-KALAVVKADAYGHGAVRCAQAL-EAEVDGF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR    QA I +L G    +E ++I   NL  VI+S  Q+   +      
Sbjct: 59  AVACIEEALELRQAGIQAPILLLEGFFEAEELELIAKHNLWTVIASSWQVRALAAF-HSP 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 L++D+G +RLGL  +E  D   +          ++++HLA AD+  +   + Q 
Sbjct: 118 SPIGVWLKLDSGMHRLGLEPKEFRDAWMSLHRLPQVGEIVLMTHLARADELDNPRTNEQA 177

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTV 235
             F           AS+ +SSG+L     +    RPG+ LYG      +S     P++ V
Sbjct: 178 SVFAQASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPIPQESTSLSGPLRPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   +R+I + +  AGE V YG      R + + V A+GYADGYP               
Sbjct: 237 MMVYSRLIAVHELPAGEPVGYGACFVTERPTRVGVVAMGYADGYPYFAVN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y
Sbjct: 287 -GTPLLVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAY 345

Query: 356 DLLVRIGTRYAKFY 369
            LL  +  R  ++Y
Sbjct: 346 QLLCGL-KRVRRYY 358


>gi|289668321|ref|ZP_06489396.1| alanine racemase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 366

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 172/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQALIDLEALRHNYRLAKQL-GGSKALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V ++  Q+   ++  S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG          +  ++ V+T  +
Sbjct: 178 ALTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFRQDTENTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R+   GE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRELPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGKVCPLIGRVSMDMLTVDLTDHPHADIGTPVQLWGDAPQVSPLAAQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRVPRVYV 355


>gi|321311401|ref|YP_004203688.1| alanine racemase [Bacillus subtilis BSn5]
 gi|320017675|gb|ADV92661.1| alanine racemase [Bacillus subtilis BSn5]
          Length = 394

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 171/384 (44%), Gaps = 30/384 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + ++++L A+K N  ++     + ++  AVVK N YG G  ++A      G  +  V 
Sbjct: 6   REVWIEVNLDAVKKNLRAIRRHIPHKSKIMAVVKANGYGHGSIEVARHALEHGASELAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GV 120
           SVEEG+ LR     A I VL        K     N+      V  +   ++++       
Sbjct: 66  SVEEGIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASAN 125

Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+   +E L+        K  + + I +H + AD+P + +  +Q 
Sbjct: 126 RLAIHINVDTGMGRLGVRTKEELLEVVKALKASKFLRWTGIFTHFSTADEPDTTLTKLQH 185

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230
           E+F + +S  K  GIE     + +++  +  P +   + R GI LYG             
Sbjct: 186 EKFISFLSFLKKQGIELPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLNLV 245

Query: 231 PMQTVVTAEARIILIRKAL-AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            ++  ++ +ARI  ++        VSYG       + +IA   IGYADGY   LS     
Sbjct: 246 KLEPALSLKARIAYVKTMRTEPRTVSYGATYIAEPNEVIATLPIGYADGYSRALSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  VP+ G++TMDM M  + ++   + G+ + I+G     +I +D+
Sbjct: 303 --------GFVLHRGKRVPVAGRVTMDMIMVSLGENGEGKQGEEVVIYGKQKGAEISVDE 354

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA    T NY+++  +  R  +FY
Sbjct: 355 VAEMLNTINYEVVSTLSRRIPRFY 378


>gi|142467|gb|AAA22220.1| alanine racemase (EC 5.1.1.1) [Geobacillus stearothermophilus]
          Length = 386

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 151/378 (39%), Gaps = 28/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     ++DL A+ +N  ++  L  +     AVVK NAYG G  ++A      G     V
Sbjct: 5   HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALERGPPP-AV 63

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR    +A I VL    P    +     +   +     L   S L S     
Sbjct: 64  AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 123

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
            + L++DTG  RLG+  +E          +     L  + +H A AD+ ++   S Q  R
Sbjct: 124 HFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           F  ++            A+S+  L  P+  F + R GI++YG            +P++  
Sbjct: 184 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 243

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  +R++ ++K   GE VSYG       +  I    IGYADG                 
Sbjct: 244 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGVRR-------------L 290

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G+I MD  M  +   L +  G  + + G      I +DDVA    
Sbjct: 291 QHFHVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++   I  R  + +
Sbjct: 349 TINYEVPCTISYRVPRIF 366


>gi|218895364|ref|YP_002443775.1| alanine racemase [Bacillus cereus G9842]
 gi|228963335|ref|ZP_04124500.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218545448|gb|ACK97842.1| alanine racemase [Bacillus cereus G9842]
 gi|228796363|gb|EEM43806.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 389

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 156/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLRSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|320009058|gb|ADW03908.1| alanine racemase [Streptomyces flavogriseus ATCC 33331]
          Length = 411

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 96/381 (25%), Positives = 168/381 (44%), Gaps = 29/381 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R +IDL AL+ N   + A +  A+  AVVK +AYG G    A A   AG       + 
Sbjct: 35  RARAEIDLAALRANVRVLRARASGAQLMAVVKSDAYGHGAVPCARAAQEAGASWLGTATP 94

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR    + R+        G  +   + ++   +S +       +     G+    
Sbjct: 95  QEALALRAAGIRGRVMCWLWTPGGPWREAVEADIDVSVSGMWALDEVVAAATEAGIPARI 154

Query: 125 ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G    +  +       +    + +++ + SH ACAD+P     + QL+ 
Sbjct: 155 QLKADTGLGRNGCQPADWPELVSAARAAEEAGVLRVTGLWSHFACADEPGHPSIAAQLDV 214

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232
           FR ++++   +G+      +A+S   L  P  HF L R GI++YG +            +
Sbjct: 215 FRDMVAYAEKEGVRPEVRHIANSPATLTVPESHFDLVRTGIAMYGISPSPELGTSADFGL 274

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T  A + L+++   G  +SYG       ++ +A+  +GYADG P   SG       
Sbjct: 275 RPVMTLAASVALVKQVPPGHGISYGHHYTTAAETTLALVPVGYADGIPRHASGR------ 328

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                G   + G +  I G++ MD  + D+   + +E G    +FGP    +   +D A 
Sbjct: 329 -----GPVLVGGAVRRIAGRVAMDQFVVDLGGEV-LEAGAEAVLFGPGDRGEPSAEDWAR 382

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A+ T  Y+++ RIG R  + +
Sbjct: 383 AADTIAYEIVTRIGVRVPRVH 403


>gi|15892051|ref|NP_359765.1| alanine racemase [Rickettsia conorii str. Malish 7]
 gi|20137218|sp|Q92JD9|ALR_RICCN RecName: Full=Alanine racemase
 gi|15619170|gb|AAL02666.1| alanine racemase [Rickettsia conorii str. Malish 7]
          Length = 355

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 182/365 (49%), Gaps = 21/365 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            ++  ++ASLA+S GI LG +YHF L RPG +LYG              VT +A II ++
Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPLTKNP------VTLKAPIIHLQ 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                  + Y       RDS+IA   +GYADG+    S             G+ FI    
Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRS 288

Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VPI+G+++MD+   D+TD    E+  G   +I G     D +A   GT  Y++L  +G+R
Sbjct: 289 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSR 348

Query: 365 YAKFY 369
           Y + Y
Sbjct: 349 YKRKY 353


>gi|75760683|ref|ZP_00740709.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228898981|ref|ZP_04063258.1| Alanine racemase [Bacillus thuringiensis IBL 4222]
 gi|74491833|gb|EAO55023.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228860655|gb|EEN05038.1| Alanine racemase [Bacillus thuringiensis IBL 4222]
          Length = 389

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 156/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLRSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|239996484|ref|ZP_04717008.1| alanine racemase [Alteromonas macleodii ATCC 27126]
          Length = 358

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 182/368 (49%), Gaps = 18/368 (4%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +  I   AL +N+ ++ AL+ ++++ AVVK +AYG G   +A  L +     F V 
Sbjct: 2   SRQTQAIIHADALLHNFKALAALAPSSQSMAVVKADAYGHGAVNVARILQHVS-SRFAVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + LR     A I VL G H  +E ++ F  N I V+    QLT+          H
Sbjct: 61  IIEEAIALRDAGISAPIVVLEGAHQAKECQMAFQHNCILVMHCEEQLTWLESCPEQQRPH 120

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+VD+G +RLG +L +    T   +N  L + ++I +H ACADD  ++  + Q++ F
Sbjct: 121 -IWLKVDSGMHRLGFALSDIEGITAK-YNHLLSEQTVIATHFACADDVDNNFTNTQIDAF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTVVTAEA 240
             + S    +  S+A+S   +  P       R G+ +YGG  +   N    +   +T  +
Sbjct: 179 NQVASKL-DLPTSVANSPATVNWPASRNAWNRLGVGVYGGAVSTSQNLDIEIYPAMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ +R   AGE + YG     ++ S IA   IGYADGYP                G   
Sbjct: 238 SVLAVRTIPAGEGIGYGQTWVASKPSKIATVGIGYADGYPRHCKN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I+G    ++G+++MDM   D+T   ++ VGD ++++G ++ + +VA  + T +Y+L+ R
Sbjct: 287 LIRGKRAYLVGRVSMDMITIDVTHIDNVAVGDEVELWGQNVPIQEVAANADTIDYELMTR 346

Query: 361 IGTRYAKF 368
           +  R  + 
Sbjct: 347 VSQRVPRI 354


>gi|228919176|ref|ZP_04082550.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228840487|gb|EEM85754.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 389

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 160/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    +L 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIELW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +       +L  + +H A +D+  +   
Sbjct: 121 DGSPVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATSDEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G++  L   A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKLVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|163119246|ref|YP_077790.2| D-alanine racemase [Bacillus licheniformis ATCC 14580]
 gi|145902752|gb|AAU22152.2| D-alanine racemase [Bacillus licheniformis ATCC 14580]
          Length = 389

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 156/385 (40%), Gaps = 30/385 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R    +IDLTALK N  +M    G + R  AVVK NAYG G  ++A A    G
Sbjct: 1   MSLKPFYRKTWAEIDLTALKENVRNMKRHIGEHVRLMAVVKANAYGHGDAQVAKAALAEG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKL 115
                V  ++E + LR    +  I VL  +      I  +  +I    SV         L
Sbjct: 61  ASILAVALLDEALSLRAQGIEEPILVLGAVPTEYASIAAEKRIIVTGYSVGWLKDVLGFL 120

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHV 174
                   Y L++DTG  RLG   +E +               + + +H A AD+  +  
Sbjct: 121 NEAEAPLEYHLKIDTGMGRLGCKTEEEIKEMMEMTESNDKLNCTGVFTHFATADEKDTDY 180

Query: 175 NSVQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
            ++QL+RF+ LIS      +    ++S+  L      F   R GI +YG           
Sbjct: 181 FNMQLDRFKELISPLPLDRLMVHSSNSAAGLRFREQLFNAVRFGIGMYGLAPSTEIKDEL 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V +    +  ++K   GE VSYG      RD  I    +GYADG+   L+G   
Sbjct: 241 PFRLREVFSLHTELTHVKKIKKGESVSYGATYTAQRDEWIGTVPVGYADGWLRRLAG--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                     +  I G    I G+I MD  M  + +   +  G  + + G      I +D
Sbjct: 298 ---------TEVLIDGKRQKIAGRICMDQFMISLAEEYPV--GTKVTLIGKQKDEWISVD 346

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++A    T NY++   I +R  + +
Sbjct: 347 EIAQNLQTINYEITCMISSRVPRMF 371


>gi|71279952|ref|YP_269587.1| alanine racemase [Colwellia psychrerythraea 34H]
 gi|71145692|gb|AAZ26165.1| alanine racemase [Colwellia psychrerythraea 34H]
          Length = 360

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 191/372 (51%), Gaps = 18/372 (4%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +++   +  I+L AL  N+  ++ L+ N+ T AV+K +AYG    K+A AL +  V+ F 
Sbjct: 3   YTSRLTQAIINLDALVKNYQYLDNLASNSNTIAVLKADAYGHDASKVAHALSSE-VKVFA 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           V  ++E + LR    +  + +L G  +    +I  + N   ++ S  QL +   +     
Sbjct: 62  VAFIDEALALRDAGIKNTVLILEGPFNESDFEIALENNFALMLHSNYQLEWLKSITPE-F 120

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           S    L+VDTG NRLG  +++  +       +++  L ++ SH A AD       + QL 
Sbjct: 121 SGELWLKVDTGMNRLGFQVEQIDNVMSQLSAQQINNL-VLCSHFATADQIDCARPAKQLA 179

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTA 238
           + + L++ + G + S+A+S+GIL  P  H    R G++LYG +      KS P+   +T 
Sbjct: 180 KLKALVAKH-GCKYSMANSAGILNWPESHGHYNRLGLALYGASPIGDSPKSQPLIPAMTL 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A II I     GE V YG   +  R++ +A  AIGYADGYP                G 
Sbjct: 239 QANIIAIHTVNVGESVGYGNNWQAERETKLATVAIGYADGYPRNA-----------KSGT 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             FI G   P++G+++MDM   DITD     +GD ++++G ++ +D VA  S T NY+LL
Sbjct: 288 PVFINGAQAPLVGRVSMDMITVDITDLKHTAIGDTVELWGKNLSIDIVAQNSDTINYELL 347

Query: 359 VRIGTRYAKFYT 370
            R+  R  + +T
Sbjct: 348 TRVSKRVPRVFT 359


>gi|52784371|ref|YP_090200.1| hypothetical protein BLi00551 [Bacillus licheniformis ATCC 14580]
 gi|52346873|gb|AAU39507.1| Alr [Bacillus licheniformis ATCC 14580]
          Length = 390

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 156/385 (40%), Gaps = 30/385 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R    +IDLTALK N  +M    G + R  AVVK NAYG G  ++A A    G
Sbjct: 2   MSLKPFYRKTWAEIDLTALKENVRNMKRHIGEHVRLMAVVKANAYGHGDAQVAKAALAEG 61

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKL 115
                V  ++E + LR    +  I VL  +      I  +  +I    SV         L
Sbjct: 62  ASILAVALLDEALSLRAQGIEEPILVLGAVPTEYASIAAEKRIIVTGYSVGWLKDVLGFL 121

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHV 174
                   Y L++DTG  RLG   +E +               + + +H A AD+  +  
Sbjct: 122 NEAEAPLEYHLKIDTGMGRLGCKTEEEIKEMMEMTESNDKLNCTGVFTHFATADEKDTDY 181

Query: 175 NSVQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
            ++QL+RF+ LIS      +    ++S+  L      F   R GI +YG           
Sbjct: 182 FNMQLDRFKELISPLPLDRLMVHSSNSAAGLRFREQLFNAVRFGIGMYGLAPSTEIKDEL 241

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V +    +  ++K   GE VSYG      RD  I    +GYADG+   L+G   
Sbjct: 242 PFRLREVFSLHTELTHVKKIKKGESVSYGATYTAQRDEWIGTVPVGYADGWLRRLAG--- 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                     +  I G    I G+I MD  M  + +   +  G  + + G      I +D
Sbjct: 299 ---------TEVLIDGKRQKIAGRICMDQFMISLAEEYPV--GTKVTLIGKQKDEWISVD 347

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++A    T NY++   I +R  + +
Sbjct: 348 EIAQNLQTINYEITCMISSRVPRMF 372


>gi|322392695|ref|ZP_08066155.1| alanine racemase [Streptococcus peroris ATCC 700780]
 gi|321144687|gb|EFX40088.1| alanine racemase [Streptococcus peroris ATCC 700780]
          Length = 367

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 153/381 (40%), Gaps = 27/381 (7%)

Query: 1   MHS--NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGV 57
           M +  +   +  IDL A++ N   M A         AVVK NAYG G   +A       V
Sbjct: 1   MKTSPHRPTKAFIDLGAIRYNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVA-TAIQNDV 59

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V++++E ++LR      RI +L         +    N+   ++ +  +        
Sbjct: 60  DGFCVSNIDEALELRQAGIDQRILILGVTEVASIDLAKKYNITLAVAGLEWIQQLLAEEP 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                   L++D+G  R+G       +       +    +  I +H A AD+ S      
Sbjct: 120 DLSGLNVHLKIDSGMGRIGFRESRDAEQAQALLKEHGASVEGIFTHFATADEESDIYFYK 179

Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
           QL RF+ ++S  K        ++S+  L   +  F   R G ++YG       +   + +
Sbjct: 180 QLNRFKEILSELKDRPDLVHASNSATTLWHTDTIFNAVRMGDAMYGLNPSGQVLTLPYEL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ ++ ++K   G  + YG   +   + +IA   IGYADG+   +         
Sbjct: 240 KPALSLESALVHVKKVPTGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS----- 294

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G   PI+G+++MD     +       +G  + + G     +I   DVA+
Sbjct: 295 -------VLVDGQACPIVGRVSMDQITIRLPKVYP--IGTKVTLIGSNGDQEITATDVAV 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+++  +  R  + Y
Sbjct: 346 YRGTINYEVVCLLSDRIPREY 366


>gi|162148204|ref|YP_001602665.1| alanine racemase, catabolic [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209542849|ref|YP_002275078.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786781|emb|CAP56364.1| putative alanine racemase, catabolic [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530526|gb|ACI50463.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 383

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 198/373 (53%), Gaps = 15/373 (4%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           H+     L IDL A++ N+ ++  L+  A  AAVVK +AYGLG  ++APAL   G + FF
Sbjct: 13  HARAGATLTIDLDAIRANYRTVRNLAAGAECAAVVKADAYGLGAARVAPALQEEGARTFF 72

Query: 62  VTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119
           V  ++EG+ LR +    ARI VL+G  PG EK     +LIPV++SV Q+  +  L    G
Sbjct: 73  VAHLDEGMALRRHVSADARIIVLHGAVPGAEKDCLHDDLIPVLNSVDQIQRWRGLAHEAG 132

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            + P  LQ+DTG +R GLS  E      +    +   L L+ISHLACADDP    ++ Q 
Sbjct: 133 RALPSILQLDTGMSRFGLSENEIRAIVADPDGLRGIDLRLVISHLACADDPDDPASTRQR 192

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            R   + +       SLA+SSG+ LG ++HF L RPG +LYG        +PM+ VV  +
Sbjct: 193 ARLVRMRALLPPAPVSLAASSGVFLGRDFHFDLVRPGAALYGVAPNAATPNPMRPVVRLQ 252

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARI+  R     + V YG   + +    IA  A GYADG+  +               G 
Sbjct: 253 ARILQTRHVSPNDGVGYGLTYRPSAMRRIATIATGYADGFMRS-----------GAARGC 301

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
            ++    +P+LG+I+MD    D+TD+       G  + + GP   +DDVA A+GT  Y++
Sbjct: 302 AWLGDMQLPVLGRISMDSMTVDVTDAPETLTRPGTMVDLLGPRRGVDDVARAAGTIGYEI 361

Query: 358 LVRIGTRYAKFYT 370
           L  +G RY + Y 
Sbjct: 362 LTSLGHRYHRAYV 374


>gi|209885499|ref|YP_002289356.1| alanine racemase [Oligotropha carboxidovorans OM5]
 gi|209873695|gb|ACI93491.1| alanine racemase [Oligotropha carboxidovorans OM5]
          Length = 412

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 193/364 (53%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW ++ + +  A  +AV+K +AYG G   +   L +AG + FFV ++ E 
Sbjct: 26  LTIDLDAIVANWKALESRTVPAECSAVIKADAYGCGLTPVTRKLASAGCKTFFVATLAEA 85

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
            + R   P+A I+VL G+           +  PVI  + +L  +       G     ALQ
Sbjct: 86  KQAREAAPKAVIYVLNGLFANCGDDFAKIDARPVIGDLNELAEWDAFRRTRGWRGQAALQ 145

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NRLGL+  EA            G ++L++SHLACA+D ++ +N  QL  FR + S
Sbjct: 146 INTGMNRLGLNPDEARGLAPRIREPDHG-IALVLSHLACAEDVANPMNGRQLAAFRDVAS 204

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL +SSGI LGP++H  L RPG +LYG        +PMQ V+  + RI  IR 
Sbjct: 205 EFSGVPASLVNSSGIFLGPHFHMDLARPGAALYGLNPTPGSDNPMQPVIGLKVRIAQIRS 264

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
               E V YG      R + +A+ + GYADGY    SG++   S       +  + G   
Sbjct: 265 VPKDETVGYGALWHAKRPTRLAIVSAGYADGYFRAASGIEGTRS------AQVVVAGQRC 318

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI+G+++MD+   DITD    ++  G ++ + G  I  D+++   GT  Y++L  +G RY
Sbjct: 319 PIVGRVSMDLMAIDITDVPHGAVRRGHFVTLIGDGITADELSHHFGTIGYEVLTSLGHRY 378

Query: 366 AKFY 369
           A+ Y
Sbjct: 379 ARDY 382


>gi|309782168|ref|ZP_07676898.1| alanine racemase [Ralstonia sp. 5_7_47FAA]
 gi|308919234|gb|EFP64901.1| alanine racemase [Ralstonia sp. 5_7_47FAA]
          Length = 374

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 99/367 (26%), Positives = 154/367 (41%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL NN       + N+R  AVVK NAYG G E++   L       F +  
Sbjct: 3   RPIQAVIHGPALANNLQVARRHAPNSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V+LR    Q  + +L G   P    I+    L   +    QL    +L        
Sbjct: 61  LDEAVRLRQLGWQGPVLLLEGFFKPEDLAIVEQYRLTTTVHCEEQLRML-ELARPKGPIS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG +RLG +          +         + ++H + AD P       QL  F 
Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGVGTIVHMTHFSDADGPRGI--EHQLVAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G EASL +S+  L  P  H    RPG+ +YG +            +   +T +
Sbjct: 178 QATQGLPG-EASLCNSAATLWHPKAHRDWVRPGVIIYGASPTGVAADIDGTGLMPAMTLK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I I+    G  + YG +  +     I + A GYADGYP    G D  H+P       
Sbjct: 237 SELIAIQDLQPGATIGYGSRFTVEHPMRIGIVACGYADGYPRHAPGWDGNHTP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+       VG  + ++G  + +DDVA ASGT  Y+L+ 
Sbjct: 290 VLVDGVRTHIVGRVSMDMITVDLAGVPEARVGTPVTLWGEGLPIDDVAHASGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALAPRVP 356


>gi|332716082|ref|YP_004443548.1| Alanine racemase [Agrobacterium sp. H13-3]
 gi|325062767|gb|ADY66457.1| Alanine racemase [Agrobacterium sp. H13-3]
          Length = 388

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/365 (35%), Positives = 207/365 (56%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++ A++  ++TAAVVK +AYGLG + ++  L++AG ++FFV  ++E 
Sbjct: 18  LTIDLGALRDNYLALAAMAPTSQTAAVVKADAYGLGADIVSQVLFDAGCRNFFVAHIDEA 77

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           + LR   + +ARIFVL G+ PG E       + PV++S+ Q+  ++    + G + P A+
Sbjct: 78  LALRLRLSAEARIFVLNGLQPGNEASCAAMAVTPVLNSLEQIAQWAAHAKNLGKTLPAAV 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG  RLGLS +E               ++ ++SHLACAD+P    N+ QL   R   
Sbjct: 138 QIDTGMCRLGLSPEELEVLASRPQLLDDIDVAFVMSHLACADEPDHLSNAAQLSVMRKAA 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +  +    ++S GI LG +YH  L RPGI+LYGG   + + +PM+ VV  +  +I  R
Sbjct: 198 VAFPDVSVCFSNSGGIFLGNDYHNSLLRPGIALYGGAPSVTRPNPMKPVVRLDVAVIQTR 257

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG LV YGG  +    + +A  A GYADG P +LS             G  +  G  
Sbjct: 258 DVPAGSLVGYGGSFEAAGPTRLATIAAGYADGLPRSLSNR-----------GAAWYNGVR 306

Query: 307 VPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI G+++MD  + DI+     ++  G ++Q+ GPD  L+D+A  +GT  Y++L  +G R
Sbjct: 307 LPIAGRVSMDSIILDISALPLGTLTQGSFVQMIGPDQTLEDIAEDAGTIAYEILTGLGRR 366

Query: 365 YAKFY 369
           Y + Y
Sbjct: 367 YRRNY 371


>gi|90423792|ref|YP_532162.1| alanine racemase [Rhodopseudomonas palustris BisB18]
 gi|90105806|gb|ABD87843.1| alanine racemase [Rhodopseudomonas palustris BisB18]
          Length = 407

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/364 (35%), Positives = 187/364 (51%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW  +   +  +  A VVK +AYG G   +A AL  AG + FFV +++E 
Sbjct: 33  LSIDLDAIVANWRKLEKTAVPSECAGVVKADAYGCGAGPVARALLAAGCKTFFVATLDEA 92

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYALQ 127
            +LR   P A ++VL G  P       + +  PVI S+ +L  +             A+ 
Sbjct: 93  RELRAAAPAAVVYVLDGFLPNCGDAYAELDCQPVIGSLDELAEWDSFCRRSFWKGGAAIH 152

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL + EA            G ++L++SHLACA+  +  +N+ Q   FR + S
Sbjct: 153 IDTGMNRLGLGIAEAEGIVPRITAGDHG-ITLVLSHLACAETLNHPLNAKQASHFRGIAS 211

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSGI LG  +HF L RPG +LYG        +PMQ VVT ++RI+ +R+
Sbjct: 212 AFSGVPASLSASSGIYLGQQFHFDLVRPGAALYGINPTPEADNPMQPVVTLQSRILQVRE 271

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YG      R + IAV A GYADGY       D         G    I G   
Sbjct: 272 VARGDTVGYGATWTARRPTRIAVVAAGYADGYFRAAGSSDGTR------GADVIIAGQRC 325

Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P+ G+I+MD+   D+TD        G    + G  I +D++A   GT  Y++L  +G RY
Sbjct: 326 PVAGRISMDLLAVDVTDLPPNAARRGHMATLIGDGITVDELAHHFGTIGYEVLTSLGKRY 385

Query: 366 AKFY 369
           A+ Y
Sbjct: 386 ARQY 389


>gi|288906075|ref|YP_003431297.1| alanine racemase [Streptococcus gallolyticus UCN34]
 gi|288732801|emb|CBI14377.1| Putative alanine racemase [Streptococcus gallolyticus UCN34]
          Length = 368

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 175/378 (46%), Gaps = 27/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N  ++ A +  + +  AVVK NAYG G   +A A+++  V  F V
Sbjct: 6   HRPTKAVIDLDAICQNIDAVKANIPQDKKAFAVVKANAYGHGATSVAQAIHHL-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  I P +  +  D ++   ++S   L   ++        
Sbjct: 65  SNIDEALELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGISLAGL 124

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G  R+G+ SL EA +   N   K    ++ I +H A AD+      + QLE 
Sbjct: 125 DVHLKVDSGMGRIGVRSLDEAENVIAN-LKKAGANVAGIFTHFATADEADDTKFNEQLEF 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVV 236
           F  L+++     A    ++S+  +      F L R GI +YG      +++  +P++  +
Sbjct: 184 FTNLVNNLSDKPAIVHASNSATSIWHSETIFNLVRLGIVMYGLNPSGTELDLPYPLKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+ ++ ++   AG  V YG      ++  IA   IGYADG+   L G           
Sbjct: 244 SLESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G    I+G+++MD     + + L   +G  + + G +    I   D+A   GT
Sbjct: 295 ---VLVNGEFCEIVGRVSMDQITIRLPEKLP--IGTKVTLIGQEGSKVISATDLAQKRGT 349

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY++L  +  R  + Y+
Sbjct: 350 INYEVLCLLSDRIPRVYS 367


>gi|296501064|ref|YP_003662764.1| alanine racemase [Bacillus thuringiensis BMB171]
 gi|296322116|gb|ADH05044.1| alanine racemase [Bacillus thuringiensis BMB171]
          Length = 389

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYIPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G++      A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|290475457|ref|YP_003468345.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus bovienii
           SS-2004]
 gi|289174778|emb|CBJ81579.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus bovienii
           SS-2004]
          Length = 355

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 153/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I L A ++N   +    G+++  +VVK NAYG G ++I  +L       F +  
Sbjct: 3   RPILATIHLDAFRHNLAVIRQKVGDSKIWSVVKANAYGHGLDRIWQSLMQ--TDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR +  Q  I +L G     +  + D   L   + S  QL    +         
Sbjct: 61  MNEAIYLREHGWQGPILLLEGFFKLSDLQLIDQYGLTTTVHSYWQLKAIEEAR-LNNPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + +E       +   K  +   +++H A +   +      Q     
Sbjct: 120 IYLKINSGMNRLGFTPEEYSQVVSMANCIKNIKSVTLMTHFANS--DNEIGIDEQFAVVE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
            L      +   LA+S  +L  P  H    RPGI LYG +            ++  ++  
Sbjct: 178 CLKMDL--LPRCLANSGAVLWHPKTHGDWVRPGIILYGASPSGKWRDIADVGLKPAMSLH 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II +     G  + YG +      + I   A GYADGYP   S            G  
Sbjct: 236 SEIIAVHDLPKGAKIGYGSRYTTQYPTRIGTVACGYADGYPRHAS-----------TGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    +LG I+MDM   D+T     E+G  ++++G ++ +D+VA ++GT  Y+LL 
Sbjct: 285 ILVGGVRTQLLGAISMDMMTVDLTPCPQTEIGSTVELWGENLPVDEVAESAGTIGYELLC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALAIRVP 351


>gi|238650557|ref|YP_002916409.1| alanine racemase [Rickettsia peacockii str. Rustic]
 gi|259710073|sp|C4K1B0|ALR_RICPU RecName: Full=Alanine racemase
 gi|238624655|gb|ACR47361.1| alanine racemase [Rickettsia peacockii str. Rustic]
          Length = 355

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 182/365 (49%), Gaps = 21/365 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   VEINLSTIKNNYLLLQDVCKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            ++  ++ASLA+S GI LG +YHF L RPG +LYG              VT +A II ++
Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPLTKNP------VTLKAPIIHLQ 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                  + Y       RDS+IA   +GYADG+    S             G+ FI    
Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRS 288

Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VPI+G+++MD+   D+TD    E+  G   +I G     D +A   GT  Y++L  +G+R
Sbjct: 289 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSR 348

Query: 365 YAKFY 369
           Y + Y
Sbjct: 349 YKRKY 353


>gi|84622288|ref|YP_449660.1| alanine racemase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|123523220|sp|Q2P7U1|ALR_XANOM RecName: Full=Alanine racemase
 gi|84366228|dbj|BAE67386.1| alanine racemase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 366

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 169/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G    A AL       F V  
Sbjct: 2   RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVPCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V ++  Q+   +   S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG       +      + V+T  +
Sbjct: 178 ALTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RIIL+R    GE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIILVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGQVCPLIGRVSMDMLTVDLTDHPQADIGATVQLWGQAPRVGPLATQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRVPRTYV 355


>gi|39995713|ref|NP_951664.1| alanine racemase [Geobacter sulfurreducens PCA]
 gi|81832115|sp|Q74FK2|ALR_GEOSL RecName: Full=Alanine racemase
 gi|39982477|gb|AAR33937.1| alanine racemase [Geobacter sulfurreducens PCA]
 gi|298504725|gb|ADI83448.1| alanine racemase [Geobacter sulfurreducens KN400]
          Length = 382

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 166/386 (43%), Gaps = 29/386 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S   +  ++DL AL++N+   +  +       AVVK +AYG G   IA  L   GV  
Sbjct: 1   MDSRPTI-AEVDLAALRHNYDLVVRTIPRGCGILAVVKADAYGHGFMDIARELETLGVTA 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118
           F V  + EG++LR       + +L G++PGQE+     NL   + S+ Q           
Sbjct: 60  FGVAFLAEGIQLRKSGIDRPVLILGGVYPGQERKCVGFNLSTALFSLEQARVLDDAAGRL 119

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VN 175
                   ++DTG  RLG+  +EA  F       K   L  IISH A AD+        +
Sbjct: 120 YRRARVHAKIDTGMGRLGIPHEEASAFFSALRELKHLDLEGIISHFASADELDEDGRRYS 179

Query: 176 SVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INK 228
            +Q  RF   +       ++     +A+S+           L RPGI LYG         
Sbjct: 180 DLQASRFAAAVAAARHEGFEPRYVHIANSAAAFGMDLPFCNLVRPGIVLYGALPSGDFEG 239

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ ++   + I +++    G  +SY  +       L+A   +GYADGY  +L+    
Sbjct: 240 KMALKPIMRLRSSIAMLKWVEPGTSISYARRFTAPDRRLVASIPVGYADGYSRSLTNR-- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKL 343
                    G+  ++G   P++G + MD  M D+T    + VGD + + G D     ++ 
Sbjct: 298 ---------GEVVVRGRRAPVVGTVCMDWIMADVTHVSGVTVGDEVTLLGCDQEGNCVRA 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +++A  +GT  Y++   I  R  + Y
Sbjct: 349 EELAEWAGTIPYEIFCGISKRVPRVY 374


>gi|306832114|ref|ZP_07465268.1| alanine racemase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304425553|gb|EFM28671.1| alanine racemase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 368

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 175/378 (46%), Gaps = 27/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N  ++ A +  + +  AVVK NAYG G   +A A+++  V  F V
Sbjct: 6   HRPTKAVIDLDAICQNIDAVKANIPQDKKAFAVVKANAYGHGATSVAQAIHHL-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  I P +  +  D ++   ++S   L   ++        
Sbjct: 65  SNIDEALELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGISLAGL 124

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G  R+G+ SL EA +   N   K    ++ I +H A AD+      + QLE 
Sbjct: 125 DVHLKVDSGMGRIGVRSLDEAENVIAN-LKKAGANVAGIFTHFATADEADDTKFNEQLEF 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVV 236
           F  L+++     A    ++S+  +      F L R GI +YG      +++  +P++  +
Sbjct: 184 FTNLVNNLSDKPAIVHASNSATSIWHSETIFNLVRLGIVMYGLNPSGTELDLPYPLKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+ ++ ++   AG  V YG      ++  IA   IGYADG+   L G           
Sbjct: 244 SLESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G    I+G+++MD     + + L   +G  + + G +    I   D+A   GT
Sbjct: 295 ---VLVNGEFCEIVGRVSMDQITIRLPEKLP--IGTKVTLIGQEGSKAISATDLAQKRGT 349

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY++L  +  R  + Y+
Sbjct: 350 INYEVLCLLSDRIPRVYS 367


>gi|227520095|ref|ZP_03950144.1| alanine racemase [Enterococcus faecalis TX0104]
 gi|227072439|gb|EEI10402.1| alanine racemase [Enterococcus faecalis TX0104]
          Length = 371

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 150/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVETAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPQYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTESEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|94310342|ref|YP_583552.1| alanine racemase [Cupriavidus metallidurans CH34]
 gi|166969425|sp|Q1LNJ3|ALR_RALME RecName: Full=Alanine racemase
 gi|93354194|gb|ABF08283.1| alanine racemase 2, PLP-binding protein [Cupriavidus metallidurans
           CH34]
          Length = 368

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/367 (27%), Positives = 158/367 (43%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL NN   +   +  +R  AVVK NAYG G  ++   L       F +  
Sbjct: 3   RPIQAVIHQPALANNLEVVRRQAPASRIWAVVKANAYGHGIRRVFAGLKA--ADGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E V LR    Q  I +L GI   Q+  ++    L   +    QL    +L        
Sbjct: 61  LSEAVLLRDLGWQGPILLLEGIFQAQDVPLLEQYRLTTAVHCEEQLRML-ELARPKGPLA 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NRLG    +       +         + ++H + AD       + Q+E F 
Sbjct: 120 IQLKLNTGMNRLGFRPAQYRAAWERARTMSCIGSIVHMTHFSDADSKRGI--AHQVEAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAE 239
              ++  G E S+A+S+ +L  P  H    RPGI LYGG+            +Q  ++  
Sbjct: 178 AATANLPG-EVSMANSAAVLWHPQAHRNWVRPGIILYGGSPTGVSSDIAETGLQPAMSLH 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I I+    G+ V YG      R   + V A GYADGYP    G     +P       
Sbjct: 237 SELIGIQDLQPGDTVGYGSMFTADRAMRVGVVACGYADGYPRHAVGWGERRAP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T     +VG  + ++G  + +DDVA ASGT  Y+L+ 
Sbjct: 290 VLVDGVRTQLVGRVSMDMICVDLTPCPKAKVGTPVTLWGHGLPIDDVAAASGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALAPRVP 356


>gi|228906022|ref|ZP_04069914.1| Alanine racemase [Bacillus thuringiensis IBL 200]
 gi|228937533|ref|ZP_04100175.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228970420|ref|ZP_04131075.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228976990|ref|ZP_04137398.1| Alanine racemase [Bacillus thuringiensis Bt407]
 gi|228782737|gb|EEM30907.1| Alanine racemase [Bacillus thuringiensis Bt407]
 gi|228789306|gb|EEM37230.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228822144|gb|EEM68130.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228853625|gb|EEM98390.1| Alanine racemase [Bacillus thuringiensis IBL 200]
 gi|326938023|gb|AEA13919.1| alanine racemase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 389

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 155/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E   F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKAFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|239832571|ref|ZP_04680900.1| alanine racemase [Ochrobactrum intermedium LMG 3301]
 gi|239824838|gb|EEQ96406.1| alanine racemase [Ochrobactrum intermedium LMG 3301]
          Length = 380

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 193/366 (52%), Gaps = 19/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       R AAVVK +AYGLG  ++APA Y+AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIARHIAPTRAAAVVKADAYGLGASRVAPAFYDAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           + L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  +  L +  G   P  L
Sbjct: 81  IALKPFLQPDATLYVLNGLQPGTEAACARDGILPVLNSLEQIENWGALAARQGRKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG +RLGLS  E      N        +  +ISHLA  D+P +  N+ QL     L+
Sbjct: 141 QLDTGMSRLGLSASEFERLLENFALLDNIDIKFVISHLASGDEPENAANARQLANMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                +  + A+S G  L  +YHF L RPG++LYG   +    + +  V+T  AR+I +R
Sbjct: 201 VRLPKLPVAFANSGGSFLDKSYHFDLARPGVALYGVGPE----NEIVPVLTLSARVIQVR 256

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YGG         +A  A+GYADG+  +LS             G  F     
Sbjct: 257 DIDKGAAVGYGGTYVAEGPMRVATIAVGYADGWFRSLSN-----------KGSAFFGDTR 305

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+++MD    D++      +++G  +++ GP  +L+DVA    T  Y++L  +G R
Sbjct: 306 LPIIGRVSMDSITLDVSALPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALGNR 365

Query: 365 YAKFYT 370
           YA+ Y 
Sbjct: 366 YARVYV 371


>gi|296391770|ref|ZP_06881245.1| alanine racemase [Pseudomonas aeruginosa PAb1]
          Length = 358

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 170/370 (45%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  
Sbjct: 2   RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R     ARI +L G     E  +     L  VI    Q   +       +   
Sbjct: 61  LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAA-GLDIPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +     N    +   +ISH ACAD+ +      QLE F 
Sbjct: 120 VWLKLDSGMHRLGFDPVALRAWHARLRNHPGVRELNLISHFACADERNHPFTEQQLESFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L+      + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A
Sbjct: 180 GLLD-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+   GE V YG      R + I   + GYADGYP            +   G   
Sbjct: 239 QLISLREVAVGESVGYGATWIAERPTRIGTVSCGYADGYPR-----------TAPAGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL +
Sbjct: 288 LVGGRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGARLSVDEVARACGTLGYELLSK 347

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 348 VTARVPRRYS 357


>gi|256617722|ref|ZP_05474568.1| alanine racemase [Enterococcus faecalis ATCC 4200]
 gi|257089263|ref|ZP_05583624.1| alanine racemase [Enterococcus faecalis CH188]
 gi|312904409|ref|ZP_07763569.1| alanine racemase [Enterococcus faecalis TX0635]
 gi|256597249|gb|EEU16425.1| alanine racemase [Enterococcus faecalis ATCC 4200]
 gi|256998075|gb|EEU84595.1| alanine racemase [Enterococcus faecalis CH188]
 gi|310632236|gb|EFQ15519.1| alanine racemase [Enterococcus faecalis TX0635]
 gi|315577240|gb|EFU89431.1| alanine racemase [Enterococcus faecalis TX0630]
          Length = 371

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 151/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 VLRLTSELIHVKRLAAGEGIGYGETYVTESEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|229055082|ref|ZP_04195513.1| Alanine racemase [Bacillus cereus AH603]
 gi|228721266|gb|EEL72791.1| Alanine racemase [Bacillus cereus AH603]
          Length = 389

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEDAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A +D+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATSDEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       K  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------KVLVNGERVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
 gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
          Length = 821

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 160/370 (43%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N++     L    +   +VK   YG G  ++A  L         V   +E
Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGV-SHPYA 125
           G +LR       I V+         ++F+ +L P + S         +    G+ S+P  
Sbjct: 523 GAELRKEGISIPIIVMNPEF-SSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184
           +++DTG +RLG   ++          +       + SHLA +D          QL++F  
Sbjct: 582 IKIDTGMHRLGFQPEDVPAICERLRAQSGVIARSVFSHLAGSDSYVFDDFTHQQLDKFTK 641

Query: 185 LISHYK-GIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                + G+E      + +S+GI     Y   + R GI LYG +    K   ++ V T +
Sbjct: 642 AAGELENGLEYKVIKHILNSAGIERFAAYQMDMVRLGIGLYGVSASGQK--GLRNVSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+   AG+ + Y     + RDS IA+  IGYADG     S            GG+
Sbjct: 700 TTILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYADGLDRHFSN----------GGGE 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G   PI+G I MD  M D+TD    + GD + IFG ++ + +++    T  Y++L 
Sbjct: 750 VLINGQRCPIIGNICMDACMIDVTDIH-AQEGDAVIIFGDELPVSELSDKLKTIPYEILT 808

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 809 SISPRVKRVY 818


>gi|150009966|ref|YP_001304709.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Parabacteroides distasonis ATCC
           8503]
 gi|255012771|ref|ZP_05284897.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. 2_1_7]
 gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503]
          Length = 821

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 160/370 (43%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N++     L    +   +VK   YG G  ++A  L         V   +E
Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGV-SHPYA 125
           G +LR       I V+         ++F+ +L P + S         +    G+ S+P  
Sbjct: 523 GAELRKEGISIPIIVMNPEF-SSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184
           +++DTG +RLG   ++          +       + SHLA +D          QL++F  
Sbjct: 582 IKIDTGMHRLGFQPEDVPAICERLRAQSGVIARSVFSHLAGSDSYVFDDFTHQQLDKFTK 641

Query: 185 LISHYK-GIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                + G+E      + +S+GI     Y   + R GI LYG +    K   ++ V T +
Sbjct: 642 AAGELESGLEYKVIKHILNSAGIERFAAYQMDMVRLGIGLYGVSASGQK--GLRNVSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+   AG+ + Y     + RDS IA+  IGYADG     S            GG+
Sbjct: 700 TTILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYADGLDRHFSN----------GGGE 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G   PI+G I MD  M D+TD    + GD + IFG ++ + +++    T  Y++L 
Sbjct: 750 VLINGQRCPIIGNICMDACMIDVTDIH-AQEGDAVIIFGDELPVSELSDKLKTIPYEILT 808

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 809 SISPRVKRVY 818


>gi|257083766|ref|ZP_05578127.1| alanine racemase [Enterococcus faecalis Fly1]
 gi|256991796|gb|EEU79098.1| alanine racemase [Enterococcus faecalis Fly1]
          Length = 371

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 150/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVETAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVQFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|28199693|ref|NP_780007.1| alanine racemase [Xylella fastidiosa Temecula1]
 gi|31076596|sp|Q87AK1|ALR_XYLFT RecName: Full=Alanine racemase
 gi|28057814|gb|AAO29656.1| alanine racemase [Xylella fastidiosa Temecula1]
          Length = 365

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 177/374 (47%), Gaps = 21/374 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M S       IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F
Sbjct: 1   MCSVRPAHAVIDLDALRHNYRFARRLGGG-KALAVVKADAYGHGAVRCAQAL-EAEVDGF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR    QA I +L G    +E ++I   NL  VI+S  Q+   +      
Sbjct: 59  AVACIEEALELRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAF-HSP 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 L++D+G +RLGL  +E  D   +  +       ++++HLA AD+  +   + Q 
Sbjct: 118 SPIGVWLKLDSGMHRLGLEPKEFRDAWMSLHSLPQVGEVVLMTHLARADELDNPRTNEQA 177

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTV 235
             F           AS+ +SSG+L     +    RPG+ LYG      +S     P++ V
Sbjct: 178 SVFAHASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   +++I +R+  AGE V YG      R + + V A+GYADGYP               
Sbjct: 237 MMVYSKLIAVRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN---------- 286

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y
Sbjct: 287 -GTPLLVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAY 345

Query: 356 DLLVRIGTRYAKFY 369
            LL  +  R  ++Y
Sbjct: 346 QLLCGL-KRVRRYY 358


>gi|241662911|ref|YP_002981271.1| alanine racemase [Ralstonia pickettii 12D]
 gi|240864938|gb|ACS62599.1| alanine racemase [Ralstonia pickettii 12D]
          Length = 374

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/367 (26%), Positives = 154/367 (41%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL NN       + N+R  AVVK NAYG G E++   L       F +  
Sbjct: 3   RPIQAVIHGPALANNLQVARRHAPNSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V+LR    Q  + +L G   P    I+    L   +    QL    +L        
Sbjct: 61  LDEAVRLRQLGWQGPVLLLEGFFKPEDLAIVEQFRLTTTVHCEEQLRML-ELARPKGPIS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG +RLG +          +         + ++H + AD P       QL  F 
Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGVGTIVHMTHFSDADGPRGI--EHQLVAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G EASL +S+  L  P  H    RPG+ +YG +            +   +T +
Sbjct: 178 QATQGLPG-EASLCNSAATLWHPKAHRDWVRPGVIMYGASPTGVAADIDGTGLMPAMTLK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I I+    G  + YG +  +     I + A GYADGYP    G D  H+P       
Sbjct: 237 SELIAIQDLQPGATIGYGSRFTVEHPMRIGIVACGYADGYPRHAPGWDGNHTP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+       VG  + ++G  + +DDVA ASGT  Y+L+ 
Sbjct: 290 VLVDGVRTHIVGRVSMDMITVDLAGVPEARVGTPVTLWGEGLPIDDVAHASGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALAPRVP 356


>gi|320160719|ref|YP_004173943.1| alanine racemase [Anaerolinea thermophila UNI-1]
 gi|319994572|dbj|BAJ63343.1| alanine racemase [Anaerolinea thermophila UNI-1]
          Length = 370

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 167/381 (43%), Gaps = 26/381 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           H++    L+IDL+ ++ N   +  ++G     AVVK NAYG G  + + A   AGVQ   
Sbjct: 3   HADLTTWLEIDLSVIRKNIRLLQEIAG-VPVMAVVKANAYGHGLIEASRAAVQAGVQWLG 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGV 120
           V  ++E ++L     +A   VL    P +        +   +  S     + ++  + G 
Sbjct: 62  VARIDEALELHRAGIRAHPIVLGYTPPERAGEAAQAGVRLAVYDSQVAQAYAAQAKAVGK 121

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                 + DTG  RLG S +E +++       +  Q+    +HLA ADDP       QL+
Sbjct: 122 PLYVHAKFDTGMGRLGASPEEGVEWMRWLHTLEGLQVEGAFTHLAEADDPQKPTTHWQLD 181

Query: 181 RFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQ 233
           RF  L+     +  +      A+S+G L  P   + L R GI++YG     +   P   +
Sbjct: 182 RFDKLLSGLESAGLRPAWVHAANSAGALYFPRARYNLVRTGIAIYGLNPSAHAPLPEGFR 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T + R+  ++       +SY  + +   +  I V A+GYADG+   +  +       
Sbjct: 242 PALTWKTRLTSVKIFPPNHGISYNYRYRTKSEERIGVCAVGYADGFRRQMGNM------- 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                   ++G  VP++G + MD  M ++      ++GD + + G     +I  ++ A  
Sbjct: 295 ------VLVRGRRVPVVGSVCMDQCMVNLDQVPEAQMGDEVVLIGQQGNDEITAEERAHE 348

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
            GT +Y+++  +  R  + Y 
Sbjct: 349 WGTIHYEVVCGLANRLPRIYV 369


>gi|163938242|ref|YP_001643126.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
 gi|229165223|ref|ZP_04293015.1| Alanine racemase [Bacillus cereus AH621]
 gi|163860439|gb|ABY41498.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
 gi|228618255|gb|EEK75288.1| Alanine racemase [Bacillus cereus AH621]
          Length = 389

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEDAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A +D+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATSDEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       K  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------KVLVNGERVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|295110109|emb|CBL24062.1| alanine racemase [Ruminococcus obeum A2-162]
          Length = 388

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 161/385 (41%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M   + ++  + L A+ +N+  M   ++   +  AV+K + YG G E IA  + +   + 
Sbjct: 1   MKKFDRVKAVVSLDAIAHNFEEMKKNIAEGTKIVAVIKADGYGHGAEAIARLIEDYEYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMS 117
            +   + EE ++LR       I +L  +     K +    +   +           + + 
Sbjct: 61  GYATATPEEALQLRDAGIDKPILILGIVFEEYYKELIAHEVRMTVCEYEMAAALSEEAVR 120

Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G      + +DTG +R+G + + E+++           ++  + +H A AD+       
Sbjct: 121 QGRQVHIHIGLDTGMSRIGFADVPESVETIKKIAALPNVEIEGMFTHFARADETDRSPAI 180

Query: 177 VQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            QL R+       +  G+E      ++S+GI+  P  +    R GI++YG          
Sbjct: 181 TQLNRYLAFTELLEKAGVEIPMKHCSNSAGIIRVPEANLNAVRAGITIYGIYPSNEVERD 240

Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +      +  ++ +  ++   AG  +SYGG     +D  +A   +GYADGYP +LS    
Sbjct: 241 IVKLIPAMELKSHVSYVKDLPAGTPISYGGTFASEKDLRVATIPVGYADGYPRSLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G   PI+G++ MD  M D+TD   ++ GD + + G D    I ++
Sbjct: 298 --------KGWVLIHGQKAPIIGRVCMDQFMVDVTDIPEVKHGDEVTLIGKDGEEFISIE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
                SG  +Y+    I  R  + Y
Sbjct: 350 TFGDLSGRFSYEFACDISKRVPRVY 374


>gi|86606130|ref|YP_474893.1| alanine racemase [Synechococcus sp. JA-3-3Ab]
 gi|86554672|gb|ABC99630.1| alanine racemase [Synechococcus sp. JA-3-3Ab]
          Length = 429

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 177/378 (46%), Gaps = 27/378 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               ++ID   L+ N   +   LS +    AVVK NAYG G   +AP    AG +   V 
Sbjct: 56  SRAWVEIDAAQLRENLRLLQARLSPDTEIWAVVKANAYGHGARLVAPIALAAGAKGLCVA 115

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
           ++ EG++LR    QA I VL  ++   + +      L   ++   Q+    ++    G  
Sbjct: 116 TLAEGIELRQAGLQAPILVLGALNTWAELQQAMAARLEVSLTRAEQIPVMRQVARWAGRP 175

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P  + VDTG  RLG+  QEA             +   + SH A AD+P S V + Q  R
Sbjct: 176 VPVHVNVDTGMTRLGIPWQEAAAVWGQICRIPELEGCSLFSHFATADEPDSPVMAQQEAR 235

Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTV 235
           F  ++   +          L +S+G L+    H+   R G++LYG +   +   P  + +
Sbjct: 236 FAQVVEQIRQAGDPLPPLHLDNSAGALIH--LHYPRVRLGLALYGLSPAPHLQVPGLRPI 293

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +AR+  I+   A   VSYG +   +R S IA  AIGYADG P  LSG          
Sbjct: 294 LRLKARLTHIQTVPAHTGVSYGHRYVTSRPSRIATLAIGYADGIPRRLSGWL-------- 345

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-----KLDDVALAS 350
              +G+++G ++  +G ITMD  M+D+T+   I+VGD +++ GP +      + D A   
Sbjct: 346 ---RGWVRGSLIQQVGTITMDQCMWDVTERPDIQVGDVVELLGPHLASAGFSIQDWADQL 402

Query: 351 GTTNYDLLVRIGTRYAKF 368
           GT +Y+LL  +  R  + 
Sbjct: 403 GTISYELLCGLSARLPRV 420


>gi|237746074|ref|ZP_04576554.1| alanine racemase [Oxalobacter formigenes HOxBLS]
 gi|229377425|gb|EEO27516.1| alanine racemase [Oxalobacter formigenes HOxBLS]
          Length = 359

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 96/369 (26%), Positives = 157/369 (42%), Gaps = 21/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   ID+ A+++N   + +    A+  AVVK NAYG G E+   A  +     F +  
Sbjct: 3   RPLVASIDIAAMQHNLSLVRSTVPRAKIWAVVKANAYGHGLERSVRAFSD--ADGFALIE 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +E  + LR    +  I +L G   P +   +   N+   +    Q+    K     +   
Sbjct: 61  IEAAIHLREIGWKKPILLLEGFFYPHELPTLARYNIAFAVHCDEQIDMLEK-SRLDMPVD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV--NSVQLER 181
             L+++TG NRLG    E              +    ++H A ++     +     QL R
Sbjct: 120 VHLKMNTGMNRLGFLPSEYGKALERLKKIPNVRDISYMTHFANSEAKKHPLLSVKEQLRR 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAE 239
           F +     KG + +L++S  ILL P       RPGI LYGGT   K    + ++  +T  
Sbjct: 180 FDSATQGLKG-DRNLSNSGAILLHPEIRTDWVRPGIMLYGGTPGGKTAAEYGLEPAMTLS 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II I+    G+ + YG            V A GYADGYP                G  
Sbjct: 239 SEIIQIQHIREGDSIGYGSIFTAKGPMKTGVVACGYADGYPRMA-----------PEGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T      VG  + ++G ++ +D+VA A+GT  Y+L+ 
Sbjct: 288 IMVDGVKTRLVGRVSMDMITVDLTPVPDAHVGSKVTLWGKELPIDEVAEAAGTVGYELMC 347

Query: 360 RIGTRYAKF 368
            +  R  + 
Sbjct: 348 ALSLR-PRI 355


>gi|322418170|ref|YP_004197393.1| alanine racemase [Geobacter sp. M18]
 gi|320124557|gb|ADW12117.1| alanine racemase [Geobacter sp. M18]
          Length = 379

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/389 (27%), Positives = 177/389 (45%), Gaps = 32/389 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S   + ++IDL AL++N+  +           AVVK +AYG G + ++  L   GV  
Sbjct: 1   MDSRPTV-VEIDLAALRHNFGLVQKKVPQGCGILAVVKADAYGHGFQYVSEELEKLGVDA 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLM 116
           F V  + EGV+LR+      + +L G++PG+E+     N+   + S+     L   +  +
Sbjct: 60  FAVAFLAEGVQLRMSGIYRPVLILGGVYPGEERRCIGLNISTALYSLEQAAALDQAALEI 119

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--- 173
            C       L+VDTG  RLG++  +  +F       K  ++  I SH A AD+       
Sbjct: 120 KCYRKAKVHLKVDTGMGRLGVTWDKVPEFLAELRQFKNLEMEGIFSHFASADELDPDGLA 179

Query: 174 VNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227
              +Q ERF   +       ++     +A+S+ IL        L RPGI LYG     + 
Sbjct: 180 FTKLQAERFNAAVVEARRQGFEPRYVHVANSAAILAADLPFCNLVRPGIILYGAAPSGDF 239

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +    V+  ++R+ +++    G  +SYG +      +LIA   +GYADGY  +L+  
Sbjct: 240 SDENSALPVMKLKSRVAMLKWVEPGTTISYGRRYVARERALIASVPVGYADGYCRSLTN- 298

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----I 341
                      G+  I+G    + G + MD  M D+TD   + VGD + + G D     I
Sbjct: 299 ----------KGEALIRGERARVAGTVCMDWIMLDVTDIEGVAVGDEVTLLGADPMGDRI 348

Query: 342 KLDDVALASGTTNYDLLVRIG-TRYAKFY 369
             +++A  +GT  Y+++  I   R  + Y
Sbjct: 349 SAEELAEKAGTIAYEIMCGISTRRVRRVY 377


>gi|157157280|ref|YP_001462440.1| alanine racemase [Escherichia coli E24377A]
 gi|193066540|ref|ZP_03047582.1| alanine racemase [Escherichia coli E22]
 gi|193071186|ref|ZP_03052109.1| alanine racemase [Escherichia coli E110019]
 gi|194425883|ref|ZP_03058439.1| alanine racemase [Escherichia coli B171]
 gi|194434909|ref|ZP_03067154.1| alanine racemase [Shigella dysenteriae 1012]
 gi|209918429|ref|YP_002292513.1| alanine racemase [Escherichia coli SE11]
 gi|218694704|ref|YP_002402371.1| alanine racemase [Escherichia coli 55989]
 gi|218700229|ref|YP_002407858.1| alanine racemase [Escherichia coli IAI39]
 gi|218704705|ref|YP_002412224.1| alanine racemase [Escherichia coli UMN026]
 gi|256018560|ref|ZP_05432425.1| alanine racemase [Shigella sp. D9]
 gi|260843482|ref|YP_003221260.1| alanine racemase 2, PLP-binding [Escherichia coli O103:H2 str.
           12009]
 gi|260854851|ref|YP_003228742.1| alanine racemase 2, PLP-binding [Escherichia coli O26:H11 str.
           11368]
 gi|293404725|ref|ZP_06648717.1| alr [Escherichia coli FVEC1412]
 gi|298380368|ref|ZP_06989967.1| alr [Escherichia coli FVEC1302]
 gi|300816877|ref|ZP_07097097.1| alanine racemase [Escherichia coli MS 107-1]
 gi|300821043|ref|ZP_07101192.1| alanine racemase [Escherichia coli MS 119-7]
 gi|300896564|ref|ZP_07115085.1| alanine racemase [Escherichia coli MS 198-1]
 gi|300906907|ref|ZP_07124581.1| alanine racemase [Escherichia coli MS 84-1]
 gi|300920384|ref|ZP_07136819.1| alanine racemase [Escherichia coli MS 115-1]
 gi|300921848|ref|ZP_07138005.1| alanine racemase [Escherichia coli MS 182-1]
 gi|301305555|ref|ZP_07211646.1| alanine racemase [Escherichia coli MS 124-1]
 gi|301327101|ref|ZP_07220381.1| alanine racemase [Escherichia coli MS 78-1]
 gi|307310056|ref|ZP_07589706.1| alanine racemase [Escherichia coli W]
 gi|331662583|ref|ZP_08363506.1| alanine racemase [Escherichia coli TA143]
 gi|331667571|ref|ZP_08368435.1| alanine racemase [Escherichia coli TA271]
 gi|331676966|ref|ZP_08377662.1| alanine racemase [Escherichia coli H591]
 gi|331682674|ref|ZP_08383293.1| alanine racemase [Escherichia coli H299]
 gi|332279622|ref|ZP_08392035.1| alanine racemase [Shigella sp. D9]
 gi|157079310|gb|ABV19018.1| alanine racemase [Escherichia coli E24377A]
 gi|192925819|gb|EDV80471.1| alanine racemase [Escherichia coli E22]
 gi|192955518|gb|EDV85998.1| alanine racemase [Escherichia coli E110019]
 gi|194415938|gb|EDX32204.1| alanine racemase [Escherichia coli B171]
 gi|194416842|gb|EDX32966.1| alanine racemase [Shigella dysenteriae 1012]
 gi|209911688|dbj|BAG76762.1| alanine racemase [Escherichia coli SE11]
 gi|218351436|emb|CAU97144.1| alanine racemase 2, PLP-binding [Escherichia coli 55989]
 gi|218370215|emb|CAR18011.1| alanine racemase 2, PLP-binding [Escherichia coli IAI39]
 gi|218431802|emb|CAR12687.1| alanine racemase 2, PLP-binding [Escherichia coli UMN026]
 gi|257753500|dbj|BAI25002.1| alanine racemase 2, PLP-binding [Escherichia coli O26:H11 str.
           11368]
 gi|257758629|dbj|BAI30126.1| alanine racemase 2, PLP-binding [Escherichia coli O103:H2 str.
           12009]
 gi|291426933|gb|EFE99959.1| alr [Escherichia coli FVEC1412]
 gi|298277810|gb|EFI19324.1| alr [Escherichia coli FVEC1302]
 gi|300359593|gb|EFJ75463.1| alanine racemase [Escherichia coli MS 198-1]
 gi|300401340|gb|EFJ84878.1| alanine racemase [Escherichia coli MS 84-1]
 gi|300412600|gb|EFJ95910.1| alanine racemase [Escherichia coli MS 115-1]
 gi|300421774|gb|EFK05085.1| alanine racemase [Escherichia coli MS 182-1]
 gi|300526342|gb|EFK47411.1| alanine racemase [Escherichia coli MS 119-7]
 gi|300530651|gb|EFK51713.1| alanine racemase [Escherichia coli MS 107-1]
 gi|300839144|gb|EFK66904.1| alanine racemase [Escherichia coli MS 124-1]
 gi|300846279|gb|EFK74039.1| alanine racemase [Escherichia coli MS 78-1]
 gi|306909774|gb|EFN40268.1| alanine racemase [Escherichia coli W]
 gi|315060440|gb|ADT74767.1| Alanine racemase [Escherichia coli W]
 gi|315254855|gb|EFU34823.1| alanine racemase [Escherichia coli MS 85-1]
 gi|320181803|gb|EFW56713.1| Alanine racemase, catabolic [Shigella boydii ATCC 9905]
 gi|320199227|gb|EFW73818.1| Alanine racemase, catabolic [Escherichia coli EC4100B]
 gi|323153142|gb|EFZ39406.1| alanine racemase [Escherichia coli EPECa14]
 gi|323162287|gb|EFZ48145.1| alanine racemase [Escherichia coli E128010]
 gi|323172462|gb|EFZ58099.1| alanine racemase [Escherichia coli LT-68]
 gi|323185649|gb|EFZ71010.1| alanine racemase [Escherichia coli 1357]
 gi|323378997|gb|ADX51265.1| alanine racemase [Escherichia coli KO11]
 gi|323947528|gb|EGB43532.1| alanine racemase [Escherichia coli H120]
 gi|324017565|gb|EGB86784.1| alanine racemase [Escherichia coli MS 117-3]
 gi|324117262|gb|EGC11169.1| alanine racemase [Escherichia coli E1167]
 gi|331061005|gb|EGI32969.1| alanine racemase [Escherichia coli TA143]
 gi|331065156|gb|EGI37051.1| alanine racemase [Escherichia coli TA271]
 gi|331075655|gb|EGI46953.1| alanine racemase [Escherichia coli H591]
 gi|331080305|gb|EGI51484.1| alanine racemase [Escherichia coli H299]
 gi|332092228|gb|EGI97305.1| alanine racemase [Shigella boydii 5216-82]
 gi|332097916|gb|EGJ02889.1| alanine racemase [Shigella dysenteriae 155-74]
 gi|332101974|gb|EGJ05320.1| alanine racemase [Shigella sp. D9]
          Length = 356

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 163/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|58580317|ref|YP_199333.1| alanine racemase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|81311987|sp|Q5H522|ALR_XANOR RecName: Full=Alanine racemase
 gi|58424911|gb|AAW73948.1| alanine racemase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 366

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 169/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G    A AL       F V  
Sbjct: 2   RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVPCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V ++  Q+   +   S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG       +      + V+T  +
Sbjct: 178 ALTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RIIL+R    GE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIILVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGQVCPLIGRVSMDMLTVDLTDHPQADIGATVQLWGQAPRVGPLATQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRLPRTYV 355


>gi|229028090|ref|ZP_04184240.1| Alanine racemase [Bacillus cereus AH1271]
 gi|228733224|gb|EEL84056.1| Alanine racemase [Bacillus cereus AH1271]
          Length = 389

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 156/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  N    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNITHIKNFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|260867595|ref|YP_003233997.1| alanine racemase 2, PLP-binding [Escherichia coli O111:H- str.
           11128]
 gi|257763951|dbj|BAI35446.1| alanine racemase 2, PLP-binding [Escherichia coli O111:H- str.
           11128]
 gi|323179296|gb|EFZ64866.1| alanine racemase [Escherichia coli 1180]
          Length = 356

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 164/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
             +    +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQVAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|229159406|ref|ZP_04287426.1| Alanine racemase [Bacillus cereus R309803]
 gi|228624073|gb|EEK80879.1| Alanine racemase [Bacillus cereus R309803]
          Length = 389

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNITHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRVGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   R+  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFELEPALSLHTRVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTRVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|229586333|ref|YP_002844834.1| alanine racemase [Rickettsia africae ESF-5]
 gi|259710072|sp|C3PMD1|ALR_RICAE RecName: Full=Alanine racemase
 gi|228021383|gb|ACP53091.1| Alanine racemase [Rickettsia africae ESF-5]
          Length = 355

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 181/365 (49%), Gaps = 21/365 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +         L
Sbjct: 66  VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLSCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            ++  ++ASLA+S GI LG +YHF L RPG +LYG              VT +A II ++
Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPLTKNP------VTLKAPIIHLQ 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                  + Y       RDS+IA   +GYADG+    S             G+ FI    
Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRS 288

Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VPI+G+++MD+   D+TD    E+  G   +I G     D +A   GT  Y++L  +G+R
Sbjct: 289 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSR 348

Query: 365 YAKFY 369
           Y + Y
Sbjct: 349 YKRKY 353


>gi|323340097|ref|ZP_08080362.1| alanine racemase [Lactobacillus ruminis ATCC 25644]
 gi|323092474|gb|EFZ35081.1| alanine racemase [Lactobacillus ruminis ATCC 25644]
          Length = 380

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 152/381 (39%), Gaps = 31/381 (8%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+K+N       +  + +  AVVK NAYG G  ++A     AG   F V
Sbjct: 12  HRNAKAVIDLDAIKHNIEIEKKRMRDDQKLFAVVKANAYGHGMIEVARTAKEAGANGFCV 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
             ++EG++LR       + +L      Q  +I   +L   +  +  L     L+   G+ 
Sbjct: 72  AIIDEGIELRNAGFDDLVLILGVCPAEQSNVIAANDLSVAVGDLDFLENAKPLLKAQGLK 131

Query: 122 HPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
               L  DTG  R+G      + EA  F     N    +   I +H ACAD         
Sbjct: 132 LKVHLAFDTGMGRIGFVNGEKVHEAEAFMKE--NSDQFEFEGIFTHFACADTKDDSYYKK 189

Query: 178 QLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232
           QLE+F  L      +     +A+S+  +   +      R GI++YG      ++     +
Sbjct: 190 QLEKFNELKDALDDLPPYVHVANSAASMWHDDCGGNAVRYGITMYGLNPSGRELELPCEI 249

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +   T E+ ++ +R    G  + YG    +     I    +GYADG+   + G       
Sbjct: 250 KPAFTLESELVSVRLLEPGTGIGYGKTYTVDEPQWIGTVPLGYADGWLRRMQGF------ 303

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 K  + G     +G++ MD  M  +     +E G  + + G +    I   DVA 
Sbjct: 304 ------KVLLNGEYCQSVGRVCMDQFMVRLP--YEMEKGTKVTLIGENGGKRITAQDVAD 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            + T +Y++L  +  R  + +
Sbjct: 356 YADTIHYEILCSVSERVPREF 376


>gi|157964159|ref|YP_001498983.1| alanine racemase [Rickettsia massiliae MTU5]
 gi|157843935|gb|ABV84436.1| Alanine racemase [Rickettsia massiliae MTU5]
          Length = 377

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 181/365 (49%), Gaps = 21/365 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 28  VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 87

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 88  VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 147

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 148 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 207

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            ++  ++ASLA+S GI LG +YHF L R G +LYG              VT +A II ++
Sbjct: 208 QYFPNVKASLANSGGIFLGQDYHFDLARSGAALYGLNPLTKNP------VTLKAPIIHLQ 261

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                  + Y       RDS+IA   +GYADG+    S             G+ FI    
Sbjct: 262 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRG 310

Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VPI+G+++MD+   D+TD    E+  G   +I G     D +A   GT  Y++L  +G+R
Sbjct: 311 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSR 370

Query: 365 YAKFY 369
           Y + Y
Sbjct: 371 YKRKY 375


>gi|322377447|ref|ZP_08051938.1| alanine racemase [Streptococcus sp. M334]
 gi|321281647|gb|EFX58656.1| alanine racemase [Streptococcus sp. M334]
          Length = 367

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 159/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPEGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      RI +L         +  + ++   ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKRILILGVSEIEAVSLAKEYDITLTVAGLEWIQALLSSEEDLAGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEAEQAQDLLQQHGARIEGIFTHFATADEESDDYFNEQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  KG+      ++S+  L      F   R G ++YG       +N  + ++  +T
Sbjct: 185 KTILASMKGLPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEILNLPYDLKPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFV---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + +     G +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIHLPKLYPL--GTKVTLIGSNGGKEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|220906119|ref|YP_002481430.1| alanine racemase [Cyanothece sp. PCC 7425]
 gi|219862730|gb|ACL43069.1| alanine racemase [Cyanothece sp. PCC 7425]
          Length = 387

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/398 (27%), Positives = 174/398 (43%), Gaps = 43/398 (10%)

Query: 1   MHSN---EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M S+   E   +++DL AL  N   +  L S +    AVVK +AYG G   +A  +   G
Sbjct: 1   MTSSQECERAWVEVDLAALGENTRRIKGLLSPSTELMAVVKADAYGHGAVMVARKVLQQG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL 115
                V ++ EG++LR     A I V   ++   + + I    L   +SS  Q   +S+ 
Sbjct: 61  ASSLGVATIAEGIELRQAGIDAPILVFGAVNTLAEVQAIAQWQLQATLSSPKQALIFSRH 120

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           +      P  L +DTG  RLG   +++L+     +      L+ + SHLA AD       
Sbjct: 121 LE--HPCPVHLVIDTGMGRLGCPQEQSLELIKFVYGLPHLTLAGLCSHLAMADAIDPSCM 178

Query: 176 SVQLERFRTLISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q  +F  ++   +  GI      LA+S+  L  P +H+ L R G++LYG     +   
Sbjct: 179 EQQRCQFEQVVQQVRCAGIPLPPLHLANSAATLRSPQFHYNLVRVGLALYGLYPAPHLRS 238

Query: 231 PM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
            +  Q V+   ARI L++   AG  VSYG Q    +   IAV  IGYADG P  LS   S
Sbjct: 239 RVELQPVLQVRARITLVKTIAAGSGVSYGHQFVAPQPMRIAVVGIGYADGVPRNLSNRMS 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-------- 340
                        ++G  V  +G ITMD  + D+T   +++ GD + + G D        
Sbjct: 299 -----------VLLRGQRVAQIGVITMDQLIIDVTGVENVQEGDVVTLIGEDGEDPGATP 347

Query: 341 ----------IKLDDVALASGTTNYDLLVRIGTRYAKF 368
                     I +++ A   GT ++++L     R  + 
Sbjct: 348 SRSGQPQVERITVEEWAHTLGTISWEILCNFKQRLPRI 385


>gi|298291077|ref|YP_003693016.1| alanine racemase [Starkeya novella DSM 506]
 gi|296927588|gb|ADH88397.1| alanine racemase [Starkeya novella DSM 506]
          Length = 374

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/365 (38%), Positives = 206/365 (56%), Gaps = 11/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+AL  N+  + A    A+ AAVVK +AYGLG    A  L++AG + FFV  + E 
Sbjct: 15  LTIDLSALAANFRDVAARVAPAKCAAVVKGDAYGLGLVPTASTLWHAGARTFFVALLSEA 74

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
            KLR   P A IFVL G+ PG E       L+PV+ SVP++  + +     G   P AL 
Sbjct: 75  RKLRELLPDAEIFVLNGLFPGTEATYQQHALLPVLGSVPEIERWQQFCERTGEPLPAALH 134

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NRLGLS  EA++            L+L++SHLACAD+P   +   QLE F+ +++
Sbjct: 135 VDTGMNRLGLSAAEAVNVAEGRDELGFP-LALLMSHLACADEPGHPLTDRQLEDFQAIVA 193

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            +  + ASLA+S+G L  P+ HF L RPGI++YG   + + + P+Q VV  + RI+ IR+
Sbjct: 194 LFPDVRASLANSAGALGDPSLHFDLVRPGIAVYGARPRADVA-PLQPVVRLDLRIVQIRR 252

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE + YG      R+S +A+ + GYADG P   S  D         G +  + G+  
Sbjct: 253 VHEGETIGYGAAHTAKRESRVAILSAGYADGIPRLASASDLR------PGAEAVVGGHRC 306

Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+I+MD+   DITD     +  GD+  + G  + L+D+A  S T +Y++L  +G RY
Sbjct: 307 PLIGRISMDLLAVDITDVDEDAVAAGDFATLLGDGLALEDLARHSATIDYEILTSLGRRY 366

Query: 366 AKFYT 370
            + + 
Sbjct: 367 HRRWV 371


>gi|295113944|emb|CBL32581.1| alanine racemase [Enterococcus sp. 7L76]
          Length = 371

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 150/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  AILDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVQFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|194467667|ref|ZP_03073654.1| alanine racemase [Lactobacillus reuteri 100-23]
 gi|194454703|gb|EDX43600.1| alanine racemase [Lactobacillus reuteri 100-23]
          Length = 375

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 92/383 (24%), Positives = 157/383 (40%), Gaps = 31/383 (8%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N  LR   L ++L AL++N       L  N++  AVVK NAYG G   +A     +G   
Sbjct: 3   NGRLRDTSLIVNLDALRHNIQEQKKVLPENSKILAVVKANAYGNGLIPVAQTAMTSGASG 62

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLM 116
             V  ++E ++LR    +A   VL         I     +   + S   + Q    +++ 
Sbjct: 63  LCVAILDEALELRDNGIEAMTLVLGITPVEDALIAAQAGVSLTVGSLDWLEQYHRLAQVA 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                    L +D+G  R+G +  +         +    +   + +H A AD P  +  +
Sbjct: 123 KPKKPLKVHLGIDSGMGRIGFTAVDTFKQAVKLLDNPEFEFEGMFTHFATADSPDENYFN 182

Query: 177 VQLERFRTLISHYKGIEA--SLASSSGILLGP-NYHFQLTRPGISLYGGTDK---INKSH 230
            Q++R+   ++    +     +A+S+  L           R GIS+YG       +  + 
Sbjct: 183 QQVQRWHQFVASLDELPPYVHMANSATGLWHREKITANTVRMGISMYGQNPSGRDLKLTL 242

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q V +  + I  +++  AG  VSYG      +D  +A   IGYADGYP  ++G     
Sbjct: 243 DLQPVSSLVSSISFVKQLKAGRSVSYGATYTAEQDEWLATLPIGYADGYPRCMTGY---- 298

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                   K  + G    I G++ MD  M  +     +  G  + + G     +I   D+
Sbjct: 299 --------KVLVDGQFCDIAGRVCMDQMMVRLPKYYPV--GTPVVLMGKSGDQEITATDL 348

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +GT NY++L  I  R  + Y
Sbjct: 349 AEQAGTINYEILTNISNRVHRIY 371


>gi|229917795|ref|YP_002886441.1| alanine racemase [Exiguobacterium sp. AT1b]
 gi|229469224|gb|ACQ70996.1| alanine racemase [Exiguobacterium sp. AT1b]
          Length = 358

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 161/373 (43%), Gaps = 24/373 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R++ID  A+ +N   +          AVVK NAYG G  ++A      G     V  
Sbjct: 3   RPSRIEIDRAAIAHNIKELTRRIPQ-DLMAVVKANAYGHGAVEVAKIALENGATMLGVAL 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +EE ++LR    +A I V+    P    +  +  +   + S   L   +  +        
Sbjct: 62  LEEALELRDAGIEAPILVMEAQFPEYAGVAAEQGITLSVFSAEWLREAAPYIEE-KPLAV 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++VDTG  RLGL  +E L+            +  I +H A AD+  S++   Q ERF  
Sbjct: 121 HIKVDTGMGRLGLRTREQLNALLEEATDSFV-VEGIYTHFATADELDSNLYYTQQERFER 179

Query: 185 LIS--HYKGIEASLASSSGILL--GPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           L+   H +      ++S+G +   G +  + L R GI+LYG              +   T
Sbjct: 180 LMDGLHERFRYIHTSNSAGAIRMAGQDVPYNLVRVGIALYGLYPSHEMETFYSFLRPAFT 239

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +++++ +++  AG+ +SYG     + D  I    +GYADG+    SG            
Sbjct: 240 LKSQLMQVKRLEAGQTISYGATYTTSADEWIGTVPVGYADGWLRKASGF----------- 288

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
            +  + G   PI+G++ MD  M  +     +  G  + + G ++ +D++A   GT NY++
Sbjct: 289 -EVEVNGIRCPIVGRVCMDRFMIRLPKEFPV--GTDVTLVGGNVAIDELASYLGTINYEI 345

Query: 358 LVRIGTRYAKFYT 370
           + +  +R  + Y 
Sbjct: 346 VCQFTSRLPRLYV 358


>gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13]
 gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13]
          Length = 821

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 161/370 (43%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N++     L    +   +VK   YG G  ++A  L         V   +E
Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGV-SHPYA 125
           G +LR       I V+         ++F+ +L P + S         +    G+ S+P  
Sbjct: 523 GAELRKEGISIPIIVMNPEF-SSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184
           +++DTG +RLG   ++          +       + SHLA +D          QL++F  
Sbjct: 582 IKIDTGMHRLGFQPEDVPAICERLIAQSGVIARSVFSHLAGSDSYVFDDFTHQQLDKFTK 641

Query: 185 LISHYK-GIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                + G+E      + +S+GI     Y   + R GI LYG +    K   ++ V T +
Sbjct: 642 AAGELESGLEYKVIKHILNSAGIERFAAYQMDMVRLGIGLYGVSASGQK--GLRNVSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+   AG+ + Y     + RDS IA+  IGYADG     S            GG+
Sbjct: 700 TTILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYADGLDRHFSN----------GGGE 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G   PI+G I MD  M D+TD+   + GD + IFG ++ + +++    T  Y++L 
Sbjct: 750 VLINGQRCPIIGNICMDACMIDVTDTH-AQEGDAVIIFGDELPVSELSDKLKTIPYEILT 808

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 809 SISPRVKRVY 818


>gi|261343600|ref|ZP_05971245.1| alanine racemase [Providencia rustigianii DSM 4541]
 gi|282567981|gb|EFB73516.1| alanine racemase [Providencia rustigianii DSM 4541]
          Length = 354

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/368 (26%), Positives = 169/368 (45%), Gaps = 25/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +R  I L +L++N   +    G A+  +V+K +AYG G  ++   L N     F V  
Sbjct: 3   RPIRAVIHLQSLEHNLSVIRQNIGAAKIWSVLKADAYGHGIHRVWRGLKN--TDGFAVLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    +  I +L G    ++  + D   L   + S  QLT   +  +      
Sbjct: 61  LHEAILLREEGWEGPILLLEGFFQQEDLQVIDQYQLTTSVHSHWQLTAIEQA-TLHQPLS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-LERF 182
             +++++G NRLG + +E +       +    +   ++SH A +D PS     +Q + +F
Sbjct: 120 VYIKLNSGMNRLGFTTEEYVSVVSKLQSMANVKNVTLMSHFANSDIPSGIDQPLQKIMQF 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
             L      +   +A+S  +L   N H+   R GI LYG +        + + +Q  ++ 
Sbjct: 180 DGL-----HLNTCIANSGAVLWHKNTHYDWVRAGIVLYGASPSGKWSDIEKYNLQAAMSL 234

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ II I +  AGE + YG +   T+   IA  A GYADGYP                G 
Sbjct: 235 QSEIIAIHEIQAGESIGYGSKFTTTKPMHIATVACGYADGYPRHA-----------PSGT 283

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             +  G    +LG ++MDM   DI+D    ++G  ++++G +I +DDVA A+GT  Y+LL
Sbjct: 284 PVWCNGMRCSLLGAVSMDMLTIDISDCPDAKLGSLVELWGQNIPVDDVAEAAGTIGYELL 343

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 344 CALARRVP 351


>gi|169830668|ref|YP_001716650.1| alanine racemase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637512|gb|ACA59018.1| alanine racemase [Candidatus Desulforudis audaxviator MP104C]
          Length = 380

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/387 (26%), Positives = 167/387 (43%), Gaps = 28/387 (7%)

Query: 1   MHSNEF-LRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M   E+ +  +++L+AL +N   +  L G +   AAVVK NAYG G  ++A  L   G  
Sbjct: 1   MFLREYSVWAEVNLSALAHNLGEVRRLVGSDTEVAAVVKANAYGHGLVEVAGTLLAHGAD 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMS 117
              V  V+EGV LR     A + V+  + P       D +L   +          +    
Sbjct: 61  RLCVARVDEGVALREAGIDAPVLVMGFVPPPLYDTALDHDLTLTVYDPEAAAELSAAAAR 120

Query: 118 CGVSHPYALQVDTGFNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            G   P  L++DTG  RLGL  + ++         +    ++  + +H A AD       
Sbjct: 121 HGRPAPVHLKLDTGMGRLGLVTADRDLYRNILAIASLPHLEIEGLYTHFANADRRDKSHA 180

Query: 176 SVQLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             QL  F  +       GI+      A+S+ ++  P     L RPGI LYG         
Sbjct: 181 QRQLVDFVEVTCTLGHDGIDIELLHAANSAALIDMPESRLNLVRPGIMLYGLYPSPEVKT 240

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           +   ++ V+T +A++  +++  AG  VSYG        + +A    GYADGY   LS   
Sbjct: 241 RQVDLRPVMTLKAQVGFLKRVPAGWTVSYGSTYTTPAPTTLATVPCGYADGYNRRLSNR- 299

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKL 343
                     G   I G   P++G++TMD  + D+     + VGD + +FG     ++ +
Sbjct: 300 ----------GAVLIHGRRAPVVGRVTMDQIVVDVGHIPGVAVGDEVVLFGRQGEAELHV 349

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
           D+VA    T NY+++  +  R  + Y 
Sbjct: 350 DEVAALLDTINYEVVCAVSARVPRVYV 376


>gi|262041903|ref|ZP_06015086.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040709|gb|EEW41797.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 356

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 163/369 (44%), Gaps = 26/369 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   IDL AL+ N   +   +  +R  AVVK NAYG G  ++  AL       F + +
Sbjct: 3   RPVVASIDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSALSA--ADGFALLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G     E  + D   L   + S  Q+    +         
Sbjct: 61  LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLTTSVHSNWQIKALQQA-KLRAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG   +                   ++SH A A++P   V     E  R
Sbjct: 120 IYLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
            +    +G+    SLA+S+  L  P  HF   RPGI LYG +         +  ++ V+T
Sbjct: 175 RIEQAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II ++    GE + YGG  + T++  I + A GYADGYP                G
Sbjct: 235 LRSEIIGVQNLRPGEAIGYGGLYRTTQEQRIGIVACGYADGYP-----------QVAPSG 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y+L
Sbjct: 284 TPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYEL 343

Query: 358 LVRIGTRYA 366
           +  +  R  
Sbjct: 344 MCALAPRVP 352


>gi|284006501|emb|CBA71762.1| alanine racemase (biosynthetic) [Arsenophonus nasoniae]
          Length = 361

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 181/367 (49%), Gaps = 20/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             I   AL++N   +  ++ ++R  AVVK NAYG G  + A  + +     F V  + E 
Sbjct: 6   AVIHRRALRHNLQRVREIASHSRIIAVVKANAYGHGLLETAHTVKDL-ADSFGVARISEA 64

Query: 69  VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     +  II    +  V+ S+ QL    ++          ++
Sbjct: 65  IALRENGISNPILLLEGFFDLAELPIITRHAIDIVVQSIEQLETLEQI-KLEKPIKVWMK 123

Query: 128 VDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERFRTL 185
           +DTG +RLG   +EA + +      + + +   I+SH + AD+P      + QL  F   
Sbjct: 124 LDTGMHRLGFRPEEAAISYARLVACQNIQKPINIMSHFSRADEPGLPAATNQQLTCFNVF 183

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242
           I    G E S+A+S+GILL P  +F   RPGI +YG + +  K      +  V+T ++ +
Sbjct: 184 IKDKPG-EKSIAASAGILLWPASYFDWVRPGIMMYGASPQEGKQGKDFGLLPVMTLKSNL 242

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I IR+  AGE V YGG     +D+ + V AIGY DGYP            +   G    I
Sbjct: 243 IAIRQHKAGEPVGYGGVWVSEQDTNLGVVAIGYGDGYPR-----------NAPSGTPILI 291

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  VPI+G+++MDM   D+    + +VGD   ++G  + +++VA  +G ++Y+LL ++ 
Sbjct: 292 NGRKVPIVGRVSMDMISVDLGVGTNDKVGDEAIMWGDLLPVEEVAAYTGVSDYELLTKLT 351

Query: 363 TRYAKFY 369
           +R A  Y
Sbjct: 352 SRVAMEY 358


>gi|260598252|ref|YP_003210823.1| alanine racemase [Cronobacter turicensis z3032]
 gi|260217429|emb|CBA31526.1| Alanine racemase, catabolic [Cronobacter turicensis z3032]
          Length = 356

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 167/370 (45%), Gaps = 26/370 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFV 62
           +  ++  +DL AL++N   +   +  +R  +VVK NAYG G +++  AL   G    F +
Sbjct: 2   SRPIQASLDLQALRHNLEVVRRAAPRSRVWSVVKANAYGHGLDRVWSAL---GATDGFAM 58

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVS 121
            ++EE + LR    +  I +L G     E  +FD   L   + S  QL   +        
Sbjct: 59  LNLEEAILLRERGWKGPILMLEGFFHADELPLFDKYRLTTSVHSNWQLKALAGA-KLNAP 117

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLE 180
               L++++G NRLG + +                   +++H A AD P     ++ ++E
Sbjct: 118 LDVYLKINSGMNRLGFTPERVHSIWQQLKAIANVGQITLMAHFADADRPDGIDAAMVRIE 177

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           +    I        SL++S+  L  P  HF   RPGI LYG +         +  +Q V+
Sbjct: 178 QAAEGIDA----PRSLSNSAAALWHPQAHFDWVRPGIVLYGASPSGQWRDIATSGLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T ++ II ++    G+ V YG + +   +  I + A GYADGYP                
Sbjct: 234 TLKSEIIGVQTLKPGDTVGYGSRYRAMGEQRIGIVACGYADGYPRHA-----------PD 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G    I+G ++MDM   D+T      +G  ++++G +IK+DDVA A GT  Y+
Sbjct: 283 GAPVLVDGVRTGIIGTVSMDMLTVDLTPCPQAGIGSPVELWGNEIKIDDVAAACGTVGYE 342

Query: 357 LLVRIGTRYA 366
           L+  +  R  
Sbjct: 343 LMCALAPRVP 352


>gi|256761608|ref|ZP_05502188.1| alanine racemase [Enterococcus faecalis T3]
 gi|256682859|gb|EEU22554.1| alanine racemase [Enterococcus faecalis T3]
          Length = 371

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 152/379 (40%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQS 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK   S+ ++ 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLSPSYGLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|326202147|ref|ZP_08192017.1| alanine racemase [Clostridium papyrosolvens DSM 2782]
 gi|325987942|gb|EGD48768.1| alanine racemase [Clostridium papyrosolvens DSM 2782]
          Length = 719

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 180/381 (47%), Gaps = 31/381 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +ID+  LK+N + +  L   + +  AVVK NAYG G  +I+ +L  AGV  F V +
Sbjct: 349 RAWAEIDMDRLKHNVNQLKLLLPHDCQLMAVVKSNAYGHGDIEISKSLNKAGVYAFAVAT 408

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + EG++LR    +  I +L   HP +  ++   +L   +       +   L S G+    
Sbjct: 409 LSEGIELRNNKIKGEILILGYTHPDEAPLLVRYDLTQTVVD---YEYAEILDSTGLKIKV 465

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLER 181
            +++DTG +RLG    +AL     ++N K   +    +HL+ AD            Q+++
Sbjct: 466 HIKIDTGMHRLG-ETNDALTNLDRTYNCKNLIVGGTYTHLSSADSVEPSNIIFTKEQIKK 524

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--- 233
           F + +++ K       +  + SS GIL  P       R GI+LYG   K N+   ++   
Sbjct: 525 FYSTLNYLKSHNRNPSKIHIQSSYGILNYPELDCDYARVGIALYGVLSKENEKTKIRAAL 584

Query: 234 -TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V++ +ARI+L ++   GE V YG      + + IAV  IGYADG P +LS        
Sbjct: 585 EPVLSLKARIVLTKEIQEGESVGYGRSFIAVKRTKIAVLCIGYADGIPRSLS-------- 636

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G   IKG   PI+G I MD    DI+D   ++ GD   + G D    I  + VA 
Sbjct: 637 --CGKGYVLIKGKKAPIIGNICMDQLTVDISDIPDVQQGDIATLIGDDGNEAITAEQVAS 694

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            +GT   +LL R+G R  + Y
Sbjct: 695 LAGTITNELLSRLGNRIERVY 715


>gi|146305685|ref|YP_001186150.1| alanine racemase [Pseudomonas mendocina ymp]
 gi|145573886|gb|ABP83418.1| alanine racemase [Pseudomonas mendocina ymp]
          Length = 358

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/369 (29%), Positives = 169/369 (45%), Gaps = 18/369 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+ +N+      +   +  AVVK NAYG G  ++  AL+      F V S
Sbjct: 2   RPLAAIVDLSAIAHNYAVAKRCAPGRQAFAVVKANAYGHGVREVVTALHEV-ADGFAVAS 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R    +ARI +L G     E  I     L  V+ S  Q               
Sbjct: 61  LEEAAEVRAMHGEARILLLEGCFEASEYAIAAQLGLDLVVQSAAQADALLA-CEPARPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +       +      ++SH ACAD+    +  +Q+ERF 
Sbjct: 120 VWLKLDSGMHRLGFDAASLRQWHARLEMAEQVAELNLLSHFACADERGHPLTELQVERFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
            L+        SLA+S+ +L  P  H    RPGI LYG T   +   +   ++  +T  A
Sbjct: 180 DLLD-LDFNHRSLANSAAVLTIPAAHMDWLRPGIMLYGATPFADFSARELGLKPAMTLAA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +R+   GE V YG      R S IA  + GYADGYP                G   
Sbjct: 239 RVIAVRQVAVGESVGYGATWVAERPSRIATVSCGYADGYPRHA-----------PSGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G   P+ G+++MDM   DITD   + +   ++++G  + +D+VA ASGT  Y+LL +
Sbjct: 288 LVDGQRAPLAGRVSMDMLTVDITDLPEVGIDSSVELWGAQLPVDEVAHASGTIGYELLTK 347

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 348 VTARVPRRY 356


>gi|294667296|ref|ZP_06732516.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292602968|gb|EFF46399.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 366

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 170/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQAL-EPEAYGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A I +L G     E ++I + +L  V ++  Q+   ++  S      
Sbjct: 60  IEEALELRQAGIGAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG       +      + V+T  +
Sbjct: 178 ALTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTAHTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R   AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+TD    ++G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGQVCPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVGALAAQCNVSAYQLLCG 346

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 347 L-KRVPRVY 354


>gi|20137243|sp|Q9PF26|ALR_XYLFA RecName: Full=Alanine racemase
          Length = 362

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 173/370 (46%), Gaps = 21/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                 IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  
Sbjct: 2   RPAHAVIDLDALRHNYRFARRLGGG-KALAVVKADAYGHGAVRCAQAL-EAEVDGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    QA I +L G    +E ++I   NL  VI+S  Q+   +          
Sbjct: 60  IEEALELRQAGIQAPILLLEGFFEAEELELIAKHNLWTVIASSWQVRALAAF-HSPSPIG 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGL  +E  D   +          ++++HLA AD+  +   + Q   F 
Sbjct: 119 VWLKLDSGMHRLGLEPKEFRDAWMSLHRLPQVGEIVLMTHLARADELDNPRTNEQASVFA 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
                     AS+ +SSG+L     +    RPG+ LYG      +S     P++ V+   
Sbjct: 179 QASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPIPQESTSLSGPLRPVMMVY 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+I + +  AGE V YG      R + + V A+GYADGYP                G  
Sbjct: 238 SRLIAVHELPAGEPVGYGACFVTERPTRVGVVAMGYADGYPYFAVN-----------GTP 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL 
Sbjct: 287 LLVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLC 346

Query: 360 RIGTRYAKFY 369
            +  R  ++Y
Sbjct: 347 GL-KRVRRYY 355


>gi|212212678|ref|YP_002303614.1| alanine racemase, biosynthetic [Coxiella burnetii CbuG_Q212]
 gi|226711037|sp|B6J0J1|ALR_COXB2 RecName: Full=Alanine racemase
 gi|212011088|gb|ACJ18469.1| alanine racemase, biosynthetic [Coxiella burnetii CbuG_Q212]
          Length = 364

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 173/370 (46%), Gaps = 25/370 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                I++TALK+N   + AL+  +   A++K N YG G  ++A AL +A    F V  +
Sbjct: 3   RATATINVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVACI 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +E + LR    ++ I V+ G +   E        L  VI    Q++   K  +   S   
Sbjct: 61  DEALTLREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLKK-TNLTSSLSV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFR 183
            L++DTG NRLG S++++    +        Q    +++HLA AD+ +     +Q++RF 
Sbjct: 120 WLKIDTGMNRLGFSVEQSPAVYNQLKTSSSIQKPIGLMTHLADADNENKTFTELQIKRFF 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--------KINKSHPMQTV 235
           ++     G   S+ +S+G    PN      RPGI LYG +         K       + V
Sbjct: 180 SVTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKKFRPV 238

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A+II I+     + V YG       D  IA+ +IGY DGYP               
Sbjct: 239 MTLSAKIIAIKNRRKNDSVGYGCTWSCPEDMPIAIVSIGYGDGYPRHA-----------P 287

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G + P++G+++MDM   D+    + +VGD + ++G  + ++ +A  +GT  Y
Sbjct: 288 SGTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIAY 347

Query: 356 DLLVRIGTRY 365
           +LL +I  R 
Sbjct: 348 ELLCKITQRV 357


>gi|191168521|ref|ZP_03030307.1| alanine racemase [Escherichia coli B7A]
 gi|309794276|ref|ZP_07688700.1| alanine racemase [Escherichia coli MS 145-7]
 gi|190901419|gb|EDV61182.1| alanine racemase [Escherichia coli B7A]
 gi|308122181|gb|EFO59443.1| alanine racemase [Escherichia coli MS 145-7]
          Length = 356

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 163/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGAVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|285019694|ref|YP_003377405.1| alanine racemase [Xanthomonas albilineans GPE PC73]
 gi|283474912|emb|CBA17411.1| probable alanine racemase protein [Xanthomonas albilineans]
          Length = 357

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/369 (29%), Positives = 167/369 (45%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L G  +  AVVK +AYG G    A AL  A    F V  
Sbjct: 2   RPARALIDLDALRHNYCLARRLGGG-KVLAVVKADAYGHGAVACARAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A I +L GI    E  ++    L  V++S  Q+   +          
Sbjct: 60  IEEALELRQAGIAAPILLLEGIFEADELPLVAAHRLWCVVASPWQVEAIAAF-DAPQPLC 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGL+                 +  +++SH A AD+  S     Q+E FR
Sbjct: 119 LWLKLDSGMHRLGLAPDAFRAAHARLSALPQVERLVLMSHFARADELESARTLEQVEVFR 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
              +   G E SL +S  +L  P  H    RPG+ LYG             ++ V+T ++
Sbjct: 179 QTTADLAG-EISLCNSPALLGWPQVHSDWARPGLMLYGADPFAAAAALPGELRPVMTLQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R    GE V YG +    R + + V AIGYADGYP   S            G   
Sbjct: 238 KVIAVRDLAPGEPVGYGARFVAPRPTRVGVVAIGYADGYPQFASN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    ++G+++MDM   D+T+     +G  +Q++G   ++D +A    ++ Y LL  
Sbjct: 287 LIDGMPGELIGRVSMDMLTVDLTEHPQAGLGSVVQLWGAQPRIDALAARCASSAYRLLCG 346

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 347 L-KRAPRHY 354


>gi|156933648|ref|YP_001437564.1| alanine racemase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531902|gb|ABU76728.1| hypothetical protein ESA_01470 [Cronobacter sakazakii ATCC BAA-894]
          Length = 356

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 167/370 (45%), Gaps = 26/370 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFV 62
           +  ++  +DL AL++N   +   +  +R  +VVK NAYG G +++  AL   G    F +
Sbjct: 2   SRPIQASLDLQALRHNLEVVRRAAPRSRVWSVVKANAYGHGLDRVWSAL---GATDGFAM 58

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVS 121
            ++EE + LR    +  I +L G     E  +FD   L   + S  QL   ++       
Sbjct: 59  LNLEEAILLRERGWKGPILMLEGFFHADELPLFDKYRLTTSVHSNWQLKALAEA-KLNAP 117

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLE 180
               L++++G NRLG   +                   +++H A AD P     ++ ++E
Sbjct: 118 LDVYLKINSGMNRLGFVPERVHTIWQQLKTIANVGQITLMAHFADADRPDGIDAAMVRIE 177

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           +    I        SLA+S+  L  P  HF   RPGI LYG +         +  +Q V+
Sbjct: 178 QAAEGIDA----PRSLANSAAALWHPQAHFDWVRPGIVLYGASPSGQWRDIATSGLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T ++ II ++    G+ V YG + +  R+  I + A GYADGYP                
Sbjct: 234 TLKSEIIGVQTLKPGDTVGYGSRYRAAREQRIGIVAGGYADGYPRHA-----------PD 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G    I+G ++MDM   D+T      +G  ++++G + K+DDVA A GT  Y+
Sbjct: 283 GTPVLVDGVRTGIVGTVSMDMLAVDLTPCPQAGIGSPVELWGNETKIDDVAAACGTIGYE 342

Query: 357 LLVRIGTRYA 366
           L+  +  R  
Sbjct: 343 LMCALAPRVP 352


>gi|188578747|ref|YP_001915676.1| alanine racemase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523199|gb|ACD61144.1| alanine racemase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 366

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 169/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V ++  Q+   +   S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKMDSGMHRLGLSPEDFRAAWLRLCGLPQIASLVLMTHLARADELDCSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG       +      + V+T  +
Sbjct: 178 ALSAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RIIL+R    GE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIILVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+TD     +G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGQVCPLIGRVSMDMLTVDLTDHPQAAIGATVQLWGQAPRVGPLATQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRVPRTYV 355


>gi|242238192|ref|YP_002986373.1| alanine racemase [Dickeya dadantii Ech703]
 gi|242130249|gb|ACS84551.1| alanine racemase [Dickeya dadantii Ech703]
          Length = 358

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 168/366 (45%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             +D +AL++N   +  ++  +R  A+VK NAYG G  + A    +     + V+ + E 
Sbjct: 6   AVVDRSALRHNLQLIRQMAPQSRLIAIVKANAYGHGALEAARVFSD--ADGYGVSRLSEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G     E  ++ +  L   +  V QL    +  +        ++
Sbjct: 64  LALRAGGITKPILLLEGFFCADELPLLAEHQLETAVHCVEQLAALEQA-TLPHPLKVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+    A  F         + Q   ++SH   AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVLPAHAEAFYARLSSCANVVQPVNVMSHFCRADEPEFDTTRRQLDCFDAFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARII 243
               G + S+A+S GILL P  H    RPGI LYG +   +       ++  +T  + +I
Sbjct: 183 RGKPGAQ-SIAASGGILLWPEAHRDQIRPGIILYGVSPLGHGDAGQWQLKPAMTLTSHLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YG     TRD+ + V A+GY DGYP                G   +I 
Sbjct: 242 AVREHHAGEPVGYGSTWSSTRDTRLGVVAMGYGDGYPRGA-----------RSGTPVWIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VP++G+++MDM   D+      +VG+ + ++G  + +++VA  +  + Y+L+ R+  
Sbjct: 291 GREVPLVGRVSMDMLTVDLGPDADDQVGNEVILWGGPLPVENVAAHNDISAYELITRLTA 350

Query: 364 RYAKFY 369
           R    Y
Sbjct: 351 RTRVEY 356


>gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B]
 gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B]
          Length = 821

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 159/370 (42%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N++     L    +   +VK   YG G  ++A  L         V   +E
Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGV-SHPYA 125
           G +LR       I V+         ++F+ +L P + S         +    G+ S+P  
Sbjct: 523 GAELRKEGISIPIIVMNPEF-SSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184
           +++DTG +RLG   ++          +       + SHLA +D          QL++F  
Sbjct: 582 IKIDTGMHRLGFQPEDVPAICERLRAQSGVIARSVFSHLAGSDSYVFDDFTHQQLDKFTK 641

Query: 185 LISHYK-GIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                + G+E      + +S+GI     Y   + R GI LYG +    K   ++ V T +
Sbjct: 642 AAGELENGLEYKVIKHILNSAGIERFAAYQMDMVRLGIGLYGVSASGQK--GLRNVSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+   AG  + Y     + RDS IA+  IGYADG     S            GG+
Sbjct: 700 TTILQIQNVPAGNSIGYSRMSYVKRDSRIAIIPIGYADGLDRHFSN----------GGGE 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G   PI+G I MD  M D+TD    + GD + IFG ++ + +++    T  Y++L 
Sbjct: 750 VLINGQRCPIIGNICMDACMIDVTDIH-AQEGDAVIIFGDELPVSELSDKLKTIPYEILT 808

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 809 SISPRVKRVY 818


>gi|229009742|ref|ZP_04166965.1| Alanine racemase [Bacillus mycoides DSM 2048]
 gi|228751537|gb|EEM01340.1| Alanine racemase [Bacillus mycoides DSM 2048]
          Length = 389

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 154/387 (39%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +      +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEYIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +   K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLRWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGY DG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYGDGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       K  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------KVLVNGERVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|170681793|ref|YP_001744011.1| alanine racemase [Escherichia coli SMS-3-5]
 gi|300939584|ref|ZP_07154241.1| alanine racemase [Escherichia coli MS 21-1]
 gi|170519511|gb|ACB17689.1| alanine racemase [Escherichia coli SMS-3-5]
 gi|300455588|gb|EFK19081.1| alanine racemase [Escherichia coli MS 21-1]
          Length = 356

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|255026477|ref|ZP_05298463.1| alanine racemase [Listeria monocytogenes FSL J2-003]
          Length = 368

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 156/379 (41%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +     L       +    
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEHL----TLEAP 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G + PI+G++ MD T+  +      + G  + I G D    I  DDVA   
Sbjct: 294 ----HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNAITADDVAQYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|226310085|ref|YP_002769979.1| alanine racemase [Brevibacillus brevis NBRC 100599]
 gi|226093033|dbj|BAH41475.1| alanine racemase [Brevibacillus brevis NBRC 100599]
          Length = 400

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 150/379 (39%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +++DL A++ N  +            AVVK + YG G   +      +G     V  ++
Sbjct: 9   WVEVDLDAIRANLETFKRHLPEKTDIMAVVKADGYGHGAVHVGKEALASGADSLAVALLD 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY-- 124
           E + LR     A I VL            +  +     SV  +T  + ++      P   
Sbjct: 69  EALILRRAGITAPILVLGYTPVESIVTASELEVELTAYSVEWITEANDILQKNDHKPVGI 128

Query: 125 ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            ++ DTG  RLG+   ++ L            + + I +H ACAD+P +     Q + F+
Sbjct: 129 HVKTDTGMGRLGVRTKEDLLAVVGALEECSKLKWTGIFTHFACADEPDTTHVRRQHDLFQ 188

Query: 184 TLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQT 234
           + +   +            +++  +  P++ +   R GI LYG    +         +  
Sbjct: 189 SFLQALREANKKLPTVHCCNTAAAIAFPDWGYDTIRLGIGLYGLYPSLYMKERADVILTP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + RI  ++KA     VSYG       D  IA   IGYADGY   LS          
Sbjct: 249 ALALKTRIAHVKKADEPFTVSYGATHTAQPDEWIATLPIGYADGYSRLLSNR-------- 300

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G+    G   PI G++ MD  M  + +S    V D + ++G     +I LD++A   
Sbjct: 301 ---GEVLYNGTRYPIAGRVCMDQIMVSL-NSTEAAVNDEVVLYGKQGDEEISLDEIADLL 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++   +  R  + Y
Sbjct: 357 GTINYEVPCMLNYRIPRLY 375


>gi|323187415|gb|EFZ72724.1| alanine racemase [Escherichia coli RN587/1]
          Length = 356

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SLA+S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLANSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|229015642|ref|ZP_04172632.1| Alanine racemase [Bacillus cereus AH1273]
 gi|229021834|ref|ZP_04178410.1| Alanine racemase [Bacillus cereus AH1272]
 gi|228739474|gb|EEL89894.1| Alanine racemase [Bacillus cereus AH1272]
 gi|228745662|gb|EEL95674.1| Alanine racemase [Bacillus cereus AH1273]
          Length = 389

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEDAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K  G+       A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKESGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGERVPIVGRVTMDQLMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|325295168|ref|YP_004281682.1| Alanine racemase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065616|gb|ADY73623.1| Alanine racemase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 353

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 26/367 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVE 66
             +I L  L +N+  +  +SG  +  AVVK NAYG G  +I+  L +   V  F V + E
Sbjct: 4   WAEIHLNRLFHNYREIKKISGRKKIFAVVKANAYGHGSVRISKFLEDKTDVSGFAVATFE 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EG +LR    +  I V+        K   D  L PVI     L    +L       P+ +
Sbjct: 64  EGKELREARIRREILVMASHLEEGYKEAVDYRLTPVIFDFEGLKLVKEL-----DIPFHV 118

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG  RLG    E  +        K  ++  I+SH + AD+        Q ++F +  
Sbjct: 119 KIDTGMGRLGFLENEWNELLSEL---KYSKVEGIMSHFSSADE-DLDFTKEQFKKFYSFA 174

Query: 187 SHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           S  K     I+  + +S+ I +  +      R GI+LYG     +    ++ V+  +A++
Sbjct: 175 SELKQLKPEIKIHIDNSAAIPIKFDSILTHCRVGIALYGSKPYPDYPLNLKQVMEVKAKV 234

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I I++  +   +SY    K ++   +AV + GYADG   +LS             G+  I
Sbjct: 235 ISIKELPSEFPISYSKTYKTSKQEKVAVISFGYADGLLRSLSN-----------KGEVLI 283

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G   PI G+I MDMT+  I + L +  GD   I G  +  +++A  +GT  Y+++  I 
Sbjct: 284 NGRRCPIRGRICMDMTIVSI-EGLKVRKGDTAIISGEKLTFEEIAEKAGTIPYEIMCDIS 342

Query: 363 TRYAKFY 369
            R  + Y
Sbjct: 343 PRVKRIY 349


>gi|333005015|gb|EGK24535.1| alanine racemase [Shigella flexneri VA-6]
          Length = 356

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|295838450|ref|ZP_06825383.1| alanine racemase [Streptomyces sp. SPB74]
 gi|197695751|gb|EDY42684.1| alanine racemase [Streptomyces sp. SPB74]
          Length = 378

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   +   +  A   AVVK +AYG G    A A   AG     V +  E
Sbjct: 9   RAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPAE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126
            + LR    + R+        G  +   + ++   +S    L   +      G +    L
Sbjct: 69  ALALRAEGVEGRMLCWLWTPGGPWRAAIEADIDVSVSGQWALDEVAVAAREAGRTARVHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +      N+   +     Q+  + SH ACAD+P     + QL  F 
Sbjct: 129 KADTGLGRNGCQPADWSALLGNALALQAEGAVQVVGLWSHFACADEPGHPSIAAQLALFE 188

Query: 184 TLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQT 234
            + +       +     +A+S   L  P  H+ L RPGI++YG +            ++ 
Sbjct: 189 EMTALAARLGVRAEARHIANSPATLGLPESHYDLVRPGIAMYGLSPSPAMGTHGDFGLRP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   A + L+++   G  VSYG       ++ + +  +GY DG P   SG         
Sbjct: 249 VMRLLAPLALVKQVPGGHGVSYGHHYVTPGETTLGLVPLGYGDGIPRHASGT-------- 300

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   + G    + G+I MD  + D+        G    +FGP    +   +D A A+
Sbjct: 301 ---GPVLVNGKWHTVAGRIAMDQFVVDLGGDTPA-PGSEAVLFGPGDRGEPSAEDWARAA 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y+++ RIG R  + +
Sbjct: 357 DTIVYEIVTRIGARVPRVH 375


>gi|291545833|emb|CBL18941.1| alanine racemase [Ruminococcus sp. SR1/5]
          Length = 389

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 91/386 (23%), Positives = 163/386 (42%), Gaps = 29/386 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M   E ++  + L A+ +N+  M   +    +  AV+K + YG G   IA  + +   + 
Sbjct: 1   MKKYERVKALVSLDAIAHNFEEMHKNVKEGTKIIAVIKADGYGHGARAIARLIQDYDYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MS 117
            F   + EE ++LR       + +L  +     + +   ++   IS +     Y+K    
Sbjct: 61  GFATATAEEALELRHAGITKPVLILGLVFEEYYEELAANDIRITISDLNTAAEYAKAGAR 120

Query: 118 CGVSHPYALQVDTGFNRLGLS--LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            G +    L +DTG  R+G +   + A+             +  + +H A AD+      
Sbjct: 121 IGKNVHIHLALDTGMTRIGYADIPENAVK-IEKISKIPNLVIEGMFTHFARADETDRSPA 179

Query: 176 SVQLERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            VQL+R+         +G+       ++S+GI+  P  +  + R GI++YG         
Sbjct: 180 LVQLDRYLRFAELLEKRGVHIPVRHCSNSAGIIRVPEANLNVVRAGITIYGIYPSEEVER 239

Query: 231 PM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            +      +  ++ +  ++    G  VSYGG     R + +A   +GYADGYP  LS   
Sbjct: 240 DIVKLTPAMELKSHVSYVKNVERGTAVSYGGTFVTERFTRMATIPVGYADGYPRQLSN-- 297

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                     G   I+G   PILG++ MD  M D+TD   ++ GD + + G D    I +
Sbjct: 298 ---------KGWVLIRGKKAPILGRVCMDQFMVDVTDIPEVKAGDEVTLMGRDGEEFISV 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + +   SG  +Y+ +  I  R  + Y
Sbjct: 349 ETLGDLSGRFSYEFVCGISKRVPRVY 374


>gi|146283965|ref|YP_001174118.1| alanine racemase, catabolic [Pseudomonas stutzeri A1501]
 gi|166969424|sp|A4VQM5|ALR_PSEU5 RecName: Full=Alanine racemase
 gi|145572170|gb|ABP81276.1| alanine racemase, catabolic [Pseudomonas stutzeri A1501]
          Length = 358

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/370 (30%), Positives = 172/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DLTAL++N+      +   +  AVVK NAYG G  +   AL       F V  
Sbjct: 2   RPLVATVDLTALRHNYLLAKQCAPQRKAFAVVKANAYGHGAPEAVTALREI-ADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE   +R   P+ARI +L G   P +     +  L   +    Q  +            
Sbjct: 61  LEEAEVIRGCAPEARILLLEGCFEPSEYLRAAELGLDIAVQDARQADWLLAA-DLARPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++D+G +RLG S+    +         ++G+L+LI SH ACAD+    +   QLER+
Sbjct: 120 VWLKLDSGMHRLGFSVDGLRECHARLKGAAQVGELNLI-SHFACADERGHALTETQLERY 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAE 239
             L+        SLA+S+ +L  P  H    RPGI LYG T       +   ++ V+T  
Sbjct: 179 AELL-ELPFEHCSLANSAAVLTLPQAHMAWIRPGIMLYGATPFAELSARELGLKPVMTLT 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +I +R    GE V YG      R S I   + GYADGYP            +   G  
Sbjct: 238 GALIAVRDVPVGESVGYGASWVAQRPSRIGTVSCGYADGYPR-----------TAPSGTS 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G  VP+ G+++MDM   D+TD    ++GD ++++G  + +D++A A GT  Y+LL 
Sbjct: 287 VVIHGQRVPLAGRVSMDMLAVDLTDLPQAQLGDAVELWGAQMPIDELAQACGTIGYELLT 346

Query: 360 RIGTRYAKFY 369
           ++  R  + Y
Sbjct: 347 KVTGRVPRRY 356


>gi|315148009|gb|EFT92025.1| alanine racemase [Enterococcus faecalis TX4244]
          Length = 371

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 152/379 (40%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQS 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK   S+ ++ 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYGLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|229171087|ref|ZP_04298685.1| Alanine racemase [Bacillus cereus MM3]
 gi|228612417|gb|EEK69641.1| Alanine racemase [Bacillus cereus MM3]
          Length = 389

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 155/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNITHIKDFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR       I VL         +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITVPILVLGPSPARDVNVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  + E   F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKAFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  I G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGKQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|325923659|ref|ZP_08185284.1| alanine racemase [Xanthomonas gardneri ATCC 19865]
 gi|325545858|gb|EGD17087.1| alanine racemase [Xanthomonas gardneri ATCC 19865]
          Length = 366

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 172/370 (46%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAQALIDLDALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V ++  Q+   +   S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATTQQVRALADFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 AWLKLDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELECSRTDEQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG      ++      + V+T  +
Sbjct: 178 ALTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQETESTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R+  AGE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRELPAGEPVGYGARFVAQRPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+T+    E+G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGVVCPLIGRVSMDMLTVDLTEHPQAEIGAPVQLWGDAPRVAPLATQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRVPRTYV 355


>gi|292493497|ref|YP_003528936.1| alanine racemase [Nitrosococcus halophilus Nc4]
 gi|291582092|gb|ADE16549.1| alanine racemase [Nitrosococcus halophilus Nc4]
          Length = 356

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 21/368 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F +  IDL+AL++N   +  L   +R  AVVK + YG G ++IA  L  A    F V  +
Sbjct: 3   FPQAIIDLSALRHNLQRVRELVPRSRVMAVVKADGYGHGLKRIAQVLAEAHA--FAVARL 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            E + LR    +  I +L GI   +E ++    +L  V+    QL    +          
Sbjct: 61  GEALVLRQAGYRGDIVLLEGIADKEELQLAAAYHLTLVVHEATQLDLLWQA-PVNAPLSV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+VDTG +RLG   +   +   +      +  +  ++SHLA AD     + ++QLE F 
Sbjct: 120 WLKVDTGMHRLGFPPERVAEAVTSLRRCPAVAAVVGLMSHLANADQAEDSLTAIQLETFE 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
            +     G+  S+A+S+ ++  P  HF   RPG+ LYG +        +  ++ V+T + 
Sbjct: 180 RIT--VPGLWRSMANSAAVIACPQAHFDWVRPGLMLYGVSPFAHCTGAAVGLKPVMTLKT 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I I     G+ + YG          + VAAIGY DGYP   +            G   
Sbjct: 238 RLIAIHHLHPGDSIGYGATWVCPEAMAVGVAAIGYGDGYPRHAA-----------PGTPL 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  VP++G+++MDM   D+      +VGD + ++G  + ++++A  + T  Y+LL +
Sbjct: 287 LVNGRPVPLVGRVSMDMVTLDLRSQPEAKVGDPVIVWGAGLPVEEIACHAATIPYELLCQ 346

Query: 361 IGTRYAKF 368
           +  R  + 
Sbjct: 347 VTARVPRI 354


>gi|256964328|ref|ZP_05568499.1| alanine racemase [Enterococcus faecalis HIP11704]
 gi|307271848|ref|ZP_07553116.1| alanine racemase [Enterococcus faecalis TX0855]
 gi|256954824|gb|EEU71456.1| alanine racemase [Enterococcus faecalis HIP11704]
 gi|306511354|gb|EFM80356.1| alanine racemase [Enterococcus faecalis TX0855]
          Length = 371

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 151/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    GV  F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGVTGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|226946802|ref|YP_002801875.1| alanine racemase [Azotobacter vinelandii DJ]
 gi|226721729|gb|ACO80900.1| alanine racemase [Azotobacter vinelandii DJ]
          Length = 361

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 171/372 (45%), Gaps = 25/372 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L G AR  AVVK +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLAALRHNYRLAREL-GGARALAVVKADAYGHGAVRCARAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A I +L G     E   I   +L  V+ S  QL    +  +      
Sbjct: 60  IEEALELREAGIAAPILLLEGFFESAELEPIQRHDLWCVVHSPWQLEAIER-TALTRPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+G +  +                 + +SH A AD+      + QL +F 
Sbjct: 119 CWLKLDSGMHRVGFAPADYRAAHARLMASGKVARIVAMSHFARADELDCPRVAEQLAQFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNY----HFQ-LTRPGISLYGGTDKI---NKSHPMQTV 235
           T  +     E SL +S  +L  P +    H     RPGI LYG T       ++  ++ V
Sbjct: 179 TATAGLVA-EFSLRNSPALLGWPQFFRHGHGDEWLRPGIMLYGATPFERYQEQAAQLRPV 237

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T E+RII +R+  AGE V YG +   +R + + V A+GYADGYP               
Sbjct: 238 MTLESRIIGVRELPAGEPVGYGARFVASRPTRVGVVAMGYADGYPRHAPN---------- 287

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    ++G+++MDM   D+TD     +G  ++++G  +   +VA A+GT  Y
Sbjct: 288 -GTPVAVDGRPAQLIGRVSMDMLTVDLTDLPQAGLGSRVELWGAQVPASEVAAAAGTIAY 346

Query: 356 DLLVRIGTRYAK 367
            L   +  R A+
Sbjct: 347 QLFCNV-RRVAR 357


>gi|126207740|ref|YP_001052965.1| alanine racemase [Actinobacillus pleuropneumoniae L20]
 gi|166919545|sp|A3MYX4|ALR_ACTP2 RecName: Full=Alanine racemase
 gi|126096532|gb|ABN73360.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 374

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 165/380 (43%), Gaps = 31/380 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  
Sbjct: 2   KPATATISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMS------ 117
           + E ++++      +I ++ G    +E +         VI    QL    ++        
Sbjct: 61  LREALEIQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAEEWQQEQ 120

Query: 118 ----------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
                             L++DTG +RLG+  ++   F        L +    +SH + A
Sbjct: 121 QKGFWKRKAKIYFPINVWLKIDTGMHRLGVHPEQVDMFYQRLKACPLVESISFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225
           D+P       Q+  F    S Y   E S+++SSGIL     H+   RPGI ++G +    
Sbjct: 181 DEPDCGYTEKQIAIFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP     
Sbjct: 241 PITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGTWISDKDTKLGVVAMGYGDGYPR---- 296

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                  +   G    + G +VPI+G+++MDM   D+      +VGD +  +G D+ +++
Sbjct: 297 -------NAPEGTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEE 349

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA   G  +Y+L+ ++  R 
Sbjct: 350 VAQHIGVISYELITKLTPRV 369


>gi|29375437|ref|NP_814591.1| alanine racemase [Enterococcus faecalis V583]
 gi|227554961|ref|ZP_03985008.1| alanine racemase [Enterococcus faecalis HH22]
 gi|229548787|ref|ZP_04437512.1| alanine racemase [Enterococcus faecalis ATCC 29200]
 gi|255971304|ref|ZP_05421890.1| alanine racemase [Enterococcus faecalis T1]
 gi|255973923|ref|ZP_05424509.1| alanine racemase [Enterococcus faecalis T2]
 gi|256854302|ref|ZP_05559666.1| alanine racemase [Enterococcus faecalis T8]
 gi|256957289|ref|ZP_05561460.1| alanine racemase [Enterococcus faecalis DS5]
 gi|257077737|ref|ZP_05572098.1| alanine racemase [Enterococcus faecalis JH1]
 gi|257081097|ref|ZP_05575458.1| alanine racemase [Enterococcus faecalis E1Sol]
 gi|257086191|ref|ZP_05580552.1| alanine racemase [Enterococcus faecalis D6]
 gi|257415416|ref|ZP_05592410.1| alanine racemase [Enterococcus faecalis AR01/DG]
 gi|257418447|ref|ZP_05595441.1| alanine racemase [Enterococcus faecalis T11]
 gi|257421098|ref|ZP_05598088.1| alanine racemase [Enterococcus faecalis X98]
 gi|294781263|ref|ZP_06746609.1| alanine racemase [Enterococcus faecalis PC1.1]
 gi|307267928|ref|ZP_07549316.1| alanine racemase [Enterococcus faecalis TX4248]
 gi|307277317|ref|ZP_07558419.1| alanine racemase [Enterococcus faecalis TX2134]
 gi|307278454|ref|ZP_07559529.1| alanine racemase [Enterococcus faecalis TX0860]
 gi|307286658|ref|ZP_07566744.1| alanine racemase [Enterococcus faecalis TX0109]
 gi|307291702|ref|ZP_07571576.1| alanine racemase [Enterococcus faecalis TX0411]
 gi|312901611|ref|ZP_07760882.1| alanine racemase [Enterococcus faecalis TX0470]
 gi|312952881|ref|ZP_07771742.1| alanine racemase [Enterococcus faecalis TX0102]
 gi|29342897|gb|AAO80661.1| alanine racemase [Enterococcus faecalis V583]
 gi|227175904|gb|EEI56876.1| alanine racemase [Enterococcus faecalis HH22]
 gi|229306016|gb|EEN72012.1| alanine racemase [Enterococcus faecalis ATCC 29200]
 gi|255962322|gb|EET94798.1| alanine racemase [Enterococcus faecalis T1]
 gi|255966795|gb|EET97417.1| alanine racemase [Enterococcus faecalis T2]
 gi|256709862|gb|EEU24906.1| alanine racemase [Enterococcus faecalis T8]
 gi|256947785|gb|EEU64417.1| alanine racemase [Enterococcus faecalis DS5]
 gi|256985767|gb|EEU73069.1| alanine racemase [Enterococcus faecalis JH1]
 gi|256989127|gb|EEU76429.1| alanine racemase [Enterococcus faecalis E1Sol]
 gi|256994221|gb|EEU81523.1| alanine racemase [Enterococcus faecalis D6]
 gi|257157244|gb|EEU87204.1| alanine racemase [Enterococcus faecalis ARO1/DG]
 gi|257160275|gb|EEU90235.1| alanine racemase [Enterococcus faecalis T11]
 gi|257162922|gb|EEU92882.1| alanine racemase [Enterococcus faecalis X98]
 gi|294451599|gb|EFG20055.1| alanine racemase [Enterococcus faecalis PC1.1]
 gi|306497250|gb|EFM66793.1| alanine racemase [Enterococcus faecalis TX0411]
 gi|306502136|gb|EFM71420.1| alanine racemase [Enterococcus faecalis TX0109]
 gi|306504960|gb|EFM74155.1| alanine racemase [Enterococcus faecalis TX0860]
 gi|306506024|gb|EFM75192.1| alanine racemase [Enterococcus faecalis TX2134]
 gi|306515569|gb|EFM84096.1| alanine racemase [Enterococcus faecalis TX4248]
 gi|310629184|gb|EFQ12467.1| alanine racemase [Enterococcus faecalis TX0102]
 gi|311291299|gb|EFQ69855.1| alanine racemase [Enterococcus faecalis TX0470]
 gi|315027037|gb|EFT38969.1| alanine racemase [Enterococcus faecalis TX2137]
 gi|315032367|gb|EFT44299.1| alanine racemase [Enterococcus faecalis TX0017]
 gi|315034374|gb|EFT46306.1| alanine racemase [Enterococcus faecalis TX0027]
 gi|315153136|gb|EFT97152.1| alanine racemase [Enterococcus faecalis TX0031]
 gi|315155155|gb|EFT99171.1| alanine racemase [Enterococcus faecalis TX0043]
 gi|315157689|gb|EFU01706.1| alanine racemase [Enterococcus faecalis TX0312]
 gi|315165076|gb|EFU09093.1| alanine racemase [Enterococcus faecalis TX1302]
 gi|315167887|gb|EFU11904.1| alanine racemase [Enterococcus faecalis TX1341]
 gi|315171754|gb|EFU15771.1| alanine racemase [Enterococcus faecalis TX1342]
 gi|315574112|gb|EFU86303.1| alanine racemase [Enterococcus faecalis TX0309B]
 gi|315581739|gb|EFU93930.1| alanine racemase [Enterococcus faecalis TX0309A]
 gi|323480028|gb|ADX79467.1| alanine racemase [Enterococcus faecalis 62]
 gi|327534432|gb|AEA93266.1| alanine racemase [Enterococcus faecalis OG1RF]
 gi|329575938|gb|EGG57459.1| alanine racemase [Enterococcus faecalis TX1467]
          Length = 371

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 150/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|320659446|gb|EFX27015.1| alanine racemase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 356

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 163/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  ++D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L      +         ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLWAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|310640776|ref|YP_003945534.1| alanine racemase [Paenibacillus polymyxa SC2]
 gi|309245726|gb|ADO55293.1| Alanine racemase [Paenibacillus polymyxa SC2]
          Length = 398

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 97/390 (24%), Positives = 166/390 (42%), Gaps = 32/390 (8%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAV-VKDNAYGLGCEKIAPALYNAGVQ 58
           M +     R +I+L  L  N+ +   +    +   V VK NAYG G  +I+  +   G  
Sbjct: 1   MQAQYRSTRAEINLDHLGANYEAFRKVLPADKLILVCVKANAYGHGAVEISKEMERLGAD 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              V  ++E ++LR    +  I VL    P   +  ++ ++   + S   L    +L   
Sbjct: 61  YLSVAFLDEALELRHAGIELPILVLGYTSPEAVQTAWEHDISLTVFSEEVLEGIRRLDRQ 120

Query: 119 G--VSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           G        +++D+G  RLGL   E AL F   +   +   L  + +H A AD+      
Sbjct: 121 GSERKLKVHIKIDSGMGRLGLLPGEAALAFVRQAHELEQVLLEGMYTHFARADEEDKSYT 180

Query: 176 SVQLERFRTLISHYK--GIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            +Q +RFR +    +  GI   +    +S+  +  P+    + R GIS+YG       + 
Sbjct: 181 LLQYDRFRGVADALREQGITIPIIHTGNSAATIDTPSLSPNMVRIGISIYGLYPSDEVNR 240

Query: 231 PM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            +     V++ +  ++  +    G  VSYG +   + +  I    IGYADGY   LSG  
Sbjct: 241 QVIELLPVLSLKTAVVYTKTLPPGWGVSYGTRYVTSSEERIGTLPIGYADGYSRMLSGKV 300

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD--- 340
                      +  I+G  VP+LG I MD  M  +     D+  I+ G+ + + G     
Sbjct: 301 -----------EVLIRGRRVPVLGTICMDQCMVSLQSFAEDAEEIQTGEEVVLIGQQSGE 349

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I  D++A   GT +Y+++  I  R  + Y
Sbjct: 350 IIAADELASKLGTIHYEVICMIADRVPRVY 379


>gi|206977042|ref|ZP_03237942.1| alanine racemase [Bacillus cereus H3081.97]
 gi|206744691|gb|EDZ56098.1| alanine racemase [Bacillus cereus H3081.97]
          Length = 389

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AI YADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIAYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CKVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|260584704|ref|ZP_05852450.1| alanine racemase [Granulicatella elegans ATCC 700633]
 gi|260157727|gb|EEW92797.1| alanine racemase [Granulicatella elegans ATCC 700633]
          Length = 371

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 160/379 (42%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   R+ + L A+K N  ++     N    AVVK NAYG G  ++A A +  GV  F + 
Sbjct: 6   HRNTRVIVHLNAIKQNIKAVKDHYPNTDIFAVVKANAYGHGMMEVAKAAHEEGVAGFCIA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E ++LR    Q  I +L         I+ D  +   +SS+  L     L+  G    
Sbjct: 66  LLDEAIQLRQEGFQEPILILGISRLEDVPILCDYRISTTVSSLDWLEKAQTLIPDGKQLI 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ--LSLIISHLACADDPSSHVNSVQLER 181
             L +DTG  R+G+   E +        +   Q     I +H A AD+  +     QL+ 
Sbjct: 126 VHLAIDTGMGRIGVRTPEQVQEIEQFLREHDSQFVFEGIFTHFATADEADTSQFEQQLKS 185

Query: 182 FRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK-----INKSHPMQT 234
           F   +   +        ++S+  +        + R GI LYG         +  + P++ 
Sbjct: 186 FNECVEALEQRPTYVHCSNSAAAIWHEGLTTNVIRWGIGLYGLNPSNGGLRLPDTLPLEK 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T E  I+ +++  AG+ +SYG     + D  IA   +GYADGY               
Sbjct: 246 ALTWETEIVFVKQLHAGDTISYGATYTCSDDEWIATLPVGYADGYLRA------------ 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
           +  G+  + G   PI+G++ MD  M  +     I VG  + + G +    I  ++++  S
Sbjct: 294 YAPGEVIVSGVRCPIVGRVCMDQCMIRLP--YEIPVGTKVTLLGKNGNERITAEELSHRS 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y+ L  I  R  + Y
Sbjct: 352 HTISYESLCLISDRVPRSY 370


>gi|218689133|ref|YP_002397345.1| alanine racemase [Escherichia coli ED1a]
 gi|218426697|emb|CAR07532.1| alanine racemase 2, PLP-binding [Escherichia coli ED1a]
          Length = 356

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  A+   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIISVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|15801412|ref|NP_287429.1| alanine racemase [Escherichia coli O157:H7 EDL933]
 gi|168750754|ref|ZP_02775776.1| alanine racemase [Escherichia coli O157:H7 str. EC4113]
 gi|168756556|ref|ZP_02781563.1| alanine racemase [Escherichia coli O157:H7 str. EC4401]
 gi|168764385|ref|ZP_02789392.1| alanine racemase [Escherichia coli O157:H7 str. EC4501]
 gi|168771082|ref|ZP_02796089.1| alanine racemase [Escherichia coli O157:H7 str. EC4486]
 gi|168777795|ref|ZP_02802802.1| alanine racemase [Escherichia coli O157:H7 str. EC4196]
 gi|168782549|ref|ZP_02807556.1| alanine racemase [Escherichia coli O157:H7 str. EC4076]
 gi|168802076|ref|ZP_02827083.1| alanine racemase [Escherichia coli O157:H7 str. EC508]
 gi|195938845|ref|ZP_03084227.1| alanine racemase [Escherichia coli O157:H7 str. EC4024]
 gi|208808683|ref|ZP_03251020.1| alanine racemase [Escherichia coli O157:H7 str. EC4206]
 gi|208815621|ref|ZP_03256800.1| alanine racemase [Escherichia coli O157:H7 str. EC4045]
 gi|208822589|ref|ZP_03262908.1| alanine racemase [Escherichia coli O157:H7 str. EC4042]
 gi|209396444|ref|YP_002270130.1| alanine racemase [Escherichia coli O157:H7 str. EC4115]
 gi|217328528|ref|ZP_03444610.1| alanine racemase [Escherichia coli O157:H7 str. TW14588]
 gi|254792667|ref|YP_003077504.1| alanine racemase [Escherichia coli O157:H7 str. TW14359]
 gi|291282205|ref|YP_003499023.1| Alanine racemase, catabolic [Escherichia coli O55:H7 str. CB9615]
 gi|20137340|sp|Q8X4I9|ALR2_ECO57 RecName: Full=Alanine racemase, catabolic
 gi|12514890|gb|AAG56041.1|AE005336_2 alanine racemase 2, catabolic [Escherichia coli O157:H7 str.
           EDL933]
 gi|187767039|gb|EDU30883.1| alanine racemase [Escherichia coli O157:H7 str. EC4196]
 gi|188015110|gb|EDU53232.1| alanine racemase [Escherichia coli O157:H7 str. EC4113]
 gi|189000041|gb|EDU69027.1| alanine racemase [Escherichia coli O157:H7 str. EC4076]
 gi|189356318|gb|EDU74737.1| alanine racemase [Escherichia coli O157:H7 str. EC4401]
 gi|189360063|gb|EDU78482.1| alanine racemase [Escherichia coli O157:H7 str. EC4486]
 gi|189365594|gb|EDU84010.1| alanine racemase [Escherichia coli O157:H7 str. EC4501]
 gi|189375882|gb|EDU94298.1| alanine racemase [Escherichia coli O157:H7 str. EC508]
 gi|208728484|gb|EDZ78085.1| alanine racemase [Escherichia coli O157:H7 str. EC4206]
 gi|208732269|gb|EDZ80957.1| alanine racemase [Escherichia coli O157:H7 str. EC4045]
 gi|208738074|gb|EDZ85757.1| alanine racemase [Escherichia coli O157:H7 str. EC4042]
 gi|209157844|gb|ACI35277.1| alanine racemase [Escherichia coli O157:H7 str. EC4115]
 gi|217318955|gb|EEC27381.1| alanine racemase [Escherichia coli O157:H7 str. TW14588]
 gi|254592067|gb|ACT71428.1| alanine racemase 2, PLP-binding [Escherichia coli O157:H7 str.
           TW14359]
 gi|290762078|gb|ADD56039.1| Alanine racemase, catabolic [Escherichia coli O55:H7 str. CB9615]
 gi|320187974|gb|EFW62641.1| Alanine racemase, catabolic [Escherichia coli O157:H7 str. EC1212]
 gi|320637335|gb|EFX07142.1| alanine racemase [Escherichia coli O157:H7 str. G5101]
 gi|320643196|gb|EFX12397.1| alanine racemase [Escherichia coli O157:H- str. 493-89]
 gi|320648133|gb|EFX16809.1| alanine racemase [Escherichia coli O157:H- str. H 2687]
 gi|320653967|gb|EFX22041.1| alanine racemase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320664583|gb|EFX31734.1| alanine racemase [Escherichia coli O157:H7 str. LSU-61]
 gi|326342729|gb|EGD66499.1| Alanine racemase, catabolic [Escherichia coli O157:H7 str. 1044]
 gi|326346421|gb|EGD70158.1| Alanine racemase, catabolic [Escherichia coli O157:H7 str. 1125]
          Length = 356

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  ++D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|229131246|ref|ZP_04260152.1| Alanine racemase [Bacillus cereus BDRD-ST196]
 gi|228652237|gb|EEL08168.1| Alanine racemase [Bacillus cereus BDRD-ST196]
          Length = 389

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 154/387 (39%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +      +    AVVK NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEYIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +   K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLQQLRWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGY DG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYGDGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGERVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373


>gi|300717006|ref|YP_003741809.1| alanine racemase, catabolic [Erwinia billingiae Eb661]
 gi|299062842|emb|CAX59962.1| Alanine racemase, catabolic [Erwinia billingiae Eb661]
          Length = 356

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 98/368 (26%), Positives = 165/368 (44%), Gaps = 22/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   +D +AL++N       + ++R  +VVK NAYG G +++  +   A    F + 
Sbjct: 2   SRPIVATVDTSALRHNLAVARQAAPHSRVWSVVKANAYGHGIDRVWQSF--AATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G     E  I D   L   + S  Q+   +K        
Sbjct: 60  NLEEAILLRERGWKKPILLLEGFFHADELAILDQYRLTTSVHSNWQIQALAKA-KLSAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG + ++     +     +      +++H A A+          L R 
Sbjct: 119 DIYLKVNSGMNRLGFAPEQVQQAWNKLRGLENVGEMTLMAHFAEAETSEGI--EQPLRRI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                    +  SLA+S+  L  P+ H    RPGI LYG +         S  +Q V++ 
Sbjct: 177 EQAAEGLDCL-RSLANSAATLWHPHTHHDWVRPGIILYGASPSGKWQDIASSGLQPVMSL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II I+    G+ V YG + +   +  I V A GYADGYP                G 
Sbjct: 236 NSEIIAIQNLKTGDGVGYGSRYRAQGEQRIGVVACGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             ++ G     +G I+MDM   D+T  L   +G  ++++G +IK+D+VA ++GT  Y+L+
Sbjct: 285 PVWVDGVRTHTVGAISMDMITVDLTPCLQAGIGSQVELWGSNIKIDEVAESAGTVGYELM 344

Query: 359 VRIGTRYA 366
             + TR  
Sbjct: 345 CALATRVP 352


>gi|126701086|ref|YP_001089983.1| alanine racemase [Clostridium difficile 630]
 gi|254977087|ref|ZP_05273559.1| alanine racemase [Clostridium difficile QCD-66c26]
 gi|255094415|ref|ZP_05323893.1| alanine racemase [Clostridium difficile CIP 107932]
 gi|255102672|ref|ZP_05331649.1| alanine racemase [Clostridium difficile QCD-63q42]
 gi|255316167|ref|ZP_05357750.1| alanine racemase [Clostridium difficile QCD-76w55]
 gi|255518828|ref|ZP_05386504.1| alanine racemase [Clostridium difficile QCD-97b34]
 gi|255652007|ref|ZP_05398909.1| alanine racemase [Clostridium difficile QCD-37x79]
 gi|260684982|ref|YP_003216267.1| alanine racemase [Clostridium difficile CD196]
 gi|260688640|ref|YP_003219774.1| alanine racemase [Clostridium difficile R20291]
 gi|306521749|ref|ZP_07408096.1| alanine racemase [Clostridium difficile QCD-32g58]
 gi|115252523|emb|CAJ70366.1| Alanine racemase 2 [Clostridium difficile]
 gi|260211145|emb|CBA66582.1| alanine racemase [Clostridium difficile CD196]
 gi|260214657|emb|CBE07277.1| alanine racemase [Clostridium difficile R20291]
          Length = 385

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 157/376 (41%), Gaps = 24/376 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +I+L  L+ N +++  L   + +   V+K +AYG G  ++A  L    V    V  
Sbjct: 7   PTWAEINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVAR 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123
             EG++LR       I  L        +      +   + S+      +++    G    
Sbjct: 67  TAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKAC 126

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++D+G  R+G    +E++         +   L  + +H A AD+ S      Q   +
Sbjct: 127 VHVKIDSGMTRIGFQPNEESVQEIIELNKLEYIDLEGMFTHFATADEVSKEYTYKQANNY 186

Query: 183 RTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQT 234
           + +       G++     +++S+ I+  P+    + R GI LYG             ++ 
Sbjct: 187 KFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLELRP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  +++I  I++   G  +SYG +   T    IA   IGYADG+              +
Sbjct: 247 AMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTR------------I 294

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTT 353
               K  IKG +  ++G+I MD  M  I   + I+VGD + +FG  ++  + +A   GT 
Sbjct: 295 QKNPKVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGEGEVTAERIAKDLGTI 354

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  I  R  + Y
Sbjct: 355 NYEVLCMISRRVDRVY 370


>gi|315174906|gb|EFU18923.1| alanine racemase [Enterococcus faecalis TX1346]
          Length = 371

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 151/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N  +    L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQNECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQE 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|29654196|ref|NP_819888.1| alanine racemase, biosynthetic [Coxiella burnetii RSA 493]
 gi|165918546|ref|ZP_02218632.1| alanine racemase [Coxiella burnetii RSA 334]
 gi|81839075|sp|Q83D71|ALR_COXBU RecName: Full=Alanine racemase
 gi|29541462|gb|AAO90402.1| alanine racemase, biosynthetic [Coxiella burnetii RSA 493]
 gi|165917792|gb|EDR36396.1| alanine racemase [Coxiella burnetii RSA 334]
          Length = 364

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 173/370 (46%), Gaps = 25/370 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                I++TALK+N   + AL+  +   A++K N YG G  ++A AL +A    F V  +
Sbjct: 3   RATATINVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVACI 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +E + LR    ++ I V+ G +   E        L  VI    Q++   K  +   S   
Sbjct: 61  DEALTLREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEK-TNLTSSLSV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFR 183
            L++DTG NRLG S++++    +        Q    +++HLA AD+ +     +Q++RF 
Sbjct: 120 WLKIDTGMNRLGFSVEQSPAVYNQLKTSSSIQKPIGLMTHLADADNENKTFTELQIKRFF 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--------KINKSHPMQTV 235
           ++     G   S+ +S+G    PN      RPGI LYG +         K       + V
Sbjct: 180 SVTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKKFRPV 238

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A+II I+     + V YG       D  IA+ +IGY DGYP               
Sbjct: 239 MTLSAKIIAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYPRHA-----------P 287

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G + P++G+++MDM   D+    + +VGD + ++G  + ++ +A  +GT  Y
Sbjct: 288 SGTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIAY 347

Query: 356 DLLVRIGTRY 365
           +LL +I  R 
Sbjct: 348 ELLCKITQRV 357


>gi|327482293|gb|AEA85603.1| alanine racemase, catabolic [Pseudomonas stutzeri DSM 4166]
          Length = 358

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/369 (29%), Positives = 166/369 (44%), Gaps = 18/369 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DLTAL++N+      +   +  AVVK NAYG G  +   AL       F V  
Sbjct: 2   RPLVATVDLTALRHNYLLAKQCAPQRKAFAVVKANAYGHGAPEAVTALREI-ADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE   +R   P+ARI +L G   P +     +  L   +    Q  +            
Sbjct: 61  LEEAEVIRGCAPEARILLLEGCFEPSEYLRAAELGLDIAVQDARQADWLLAA-DLARPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG S+    +               +ISH ACAD+    +   QLER+ 
Sbjct: 120 VWLKLDSGMHRLGFSVDGLRECHARLKGAPQVGELNLISHFACADERGHALTETQLERYA 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
            L+        SLA+S+ ++  P  H    RPGI LYG T       +   ++ V+T   
Sbjct: 180 ELL-ELPFEHCSLANSAAVVTLPQAHMAWIRPGIMLYGATPFAELSARELGLKPVMTLTG 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R    GE V YG      R S I   + GYADGYP            +   G   
Sbjct: 239 ALIAVRDVPVGESVGYGASWVAQRPSRIGTVSCGYADGYPR-----------TAPSGTSV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G  VP+ G+++MDM   D+TD    ++GD ++++G  + +D++A A GT  Y+LL +
Sbjct: 288 VIHGQRVPLAGRVSMDMLAVDLTDLPQAQLGDAVELWGAQMPIDELAQACGTIGYELLTK 347

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 348 VTGRVPRRY 356


>gi|197303364|ref|ZP_03168403.1| hypothetical protein RUMLAC_02086 [Ruminococcus lactaris ATCC
           29176]
 gi|197297362|gb|EDY31923.1| hypothetical protein RUMLAC_02086 [Ruminococcus lactaris ATCC
           29176]
          Length = 387

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 154/385 (40%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58
           M     +   IDL A+  N   M    G + +  AV+K + YG G   +A        + 
Sbjct: 1   MKKYSRVCAYIDLDAIAYNMEQMKKRIGEDGKLIAVIKTDGYGHGAVPLAKMFEEMPYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMS 117
            + V  + E   LR    +  I VL  + P + + + +  +   + +             
Sbjct: 61  GYAVACMGEAGVLREQGIKKPILVLGCVFPDEYEEMVEKEIRAAVYTEEMARGMSEAAQR 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +  + +++DTG  R+G  + +E+             Q   + +H A AD+       
Sbjct: 121 LGKTAYFHIKIDTGMGRIGFPVTEESASSIERISRLPNVQTEAMFTHFAKADELDKSYTL 180

Query: 177 VQLERFRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q E+F  +    +     +      +S+GI+  P+    + R GIS+YG     +    
Sbjct: 181 KQHEKFLWMKELMEERNVPIRYFDCDNSAGIIDFPDLKHDIARAGISIYGMYPSDDVDQN 240

Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               +  +   + +  +++   G  +SYGG     +   IA   +GY DGYP +LS    
Sbjct: 241 AVSLRPALRLVSHVSFVKEVGKGTSISYGGTYITEKKMKIATIPVGYGDGYPRSLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G    ILG++ MD  M D+T+   +   D + + G D    I+++
Sbjct: 298 --------KGYVLIHGKKARILGRVCMDQFMVDVTEIPDVAFMDEVILIGRDQEEQIQVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           D+A  SG  NY+ +  +  R  + Y
Sbjct: 350 DLAELSGRFNYEFVCCLSKRIPRVY 374


>gi|114328882|ref|YP_746039.1| alanine racemase [Granulibacter bethesdensis CGDNIH1]
 gi|114317056|gb|ABI63116.1| alanine racemase [Granulibacter bethesdensis CGDNIH1]
          Length = 360

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 187/366 (51%), Gaps = 13/366 (3%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             RL+IDL A+  NW  +    G  R   AVVK + YGLG   IA  L   G    FV  
Sbjct: 1   MARLEIDLEAIAANWRFLRTTHGTNRITGAVVKADGYGLGAAVIAQRLVQEGCDHIFVAH 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123
            +E + LR   P A + VL G+ PG E    D  LIP + S+ ++  +  +      + P
Sbjct: 61  PQEALTLRPLIPSATLIVLNGLWPGWEAAYTDHGLIPALGSLAEIEAWRQEATRREQALP 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L VDTG NRLGL  QE               L  I++HL  A+ P    N++Q +RF 
Sbjct: 121 AFLHVDTGINRLGLDPQERDRLAERPELLDGITLRAIMTHLISAEIPDHDSNTLQRQRFA 180

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
              S       S+A+SSGI LGP++   + RPG +LYG      + +PM+ V+   AR++
Sbjct: 181 AACSRLPPAPRSIANSSGIFLGPDFASDIARPGAALYGINPVPGRPNPMRPVLRLSARVL 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            IR   AGE+V Y G     R S IAV ++GYADG+   LS              +    
Sbjct: 241 QIRPVEAGEIVGYNGIWVAQRPSRIAVCSVGYADGFQRALSSR-----------AEAAFD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  +P++G+++MD+T +D+TD   I VG ++++ GP++  D+VA  + T  Y++L  +G 
Sbjct: 290 GARIPLVGRVSMDLTTYDVTDDPRITVGSWLELIGPEVSPDEVAARASTNGYEVLTSLGR 349

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 350 RYERVY 355


>gi|74311720|ref|YP_310139.1| alanine racemase [Shigella sonnei Ss046]
 gi|73855197|gb|AAZ87904.1| alanine racemase 2, catabolic [Shigella sonnei Ss046]
 gi|323165267|gb|EFZ51055.1| alanine racemase [Shigella sonnei 53G]
          Length = 356

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 163/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALVLRVP 352


>gi|320195830|gb|EFW70455.1| Alanine racemase, catabolic [Escherichia coli WV_060327]
          Length = 356

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 161/368 (43%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|290892923|ref|ZP_06555913.1| alanine racemase [Listeria monocytogenes FSL J2-071]
 gi|290557499|gb|EFD91023.1| alanine racemase [Listeria monocytogenes FSL J2-071]
          Length = 368

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 154/379 (40%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +     L       +    
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEDL----TLEAP 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G   PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNTITADDAAQYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|107104029|ref|ZP_01367947.1| hypothetical protein PaerPA_01005102 [Pseudomonas aeruginosa PACS2]
 gi|218894025|ref|YP_002442894.1| biosynthetic alanine racemase [Pseudomonas aeruginosa LESB58]
 gi|254244178|ref|ZP_04937500.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 2192]
 gi|126197556|gb|EAZ61619.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 2192]
 gi|218774253|emb|CAW30070.1| biosynthetic alanine racemase [Pseudomonas aeruginosa LESB58]
          Length = 358

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 171/370 (46%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  
Sbjct: 2   RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R     ARI +L G     E  +     L  VI    Q   +       +   
Sbjct: 61  LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAA-GLDIPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +     N    +   +ISH ACAD+ +  +   QLE F 
Sbjct: 120 VWLKLDSGMHRLGFDPAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L+      + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A
Sbjct: 180 GLLD-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+   GE V YG      R + I   + GYADGYP            +   G   
Sbjct: 239 QLISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL +
Sbjct: 288 LVGGRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSK 347

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 348 VTARVPRRYS 357


>gi|307245065|ref|ZP_07527159.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307249464|ref|ZP_07531453.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|307254020|ref|ZP_07535868.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258475|ref|ZP_07540213.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854053|gb|EFM86264.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306858538|gb|EFM90605.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306863046|gb|EFM94992.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867480|gb|EFM99330.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 381

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/388 (25%), Positives = 169/388 (43%), Gaps = 35/388 (9%)

Query: 1   MHSNE----FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M S++         I   AL++N   +   +   +  A++K NAYG G    A  L +  
Sbjct: 1   MKSSKKVMKPATATISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL- 59

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLT----- 110
           V+ F V  + E ++++      +I ++ G    +E +         VI    QL      
Sbjct: 60  VEGFGVARLREALEIQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQV 119

Query: 111 -----------FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL 159
                      F+ +           L++DTG +RLG+  ++   F        L +   
Sbjct: 120 AKEWQQEQQKGFWKRKAKIYFPINVWLKIDTGMHRLGVHPEKVDMFYQRLKACPLVESIS 179

Query: 160 IISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL 219
            +SH + AD+P       Q+  F    S Y   E S+++SSGIL     H+   RPGI +
Sbjct: 180 FVSHFSRADEPDCGYTEKQIAVFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIM 239

Query: 220 YGGTDK--INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
           +G +           + V+T  + +I +R   AGE V YGG     +D+ + V A+GY D
Sbjct: 240 HGISPHYTPITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGD 299

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           GYP            +   G    + G +VPI+G+++MDM   D+      +VGD +  +
Sbjct: 300 GYPR-----------NAPEGTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFW 348

Query: 338 GPDIKLDDVALASGTTNYDLLVRIGTRY 365
           G D+ +++VA   G  +Y+L+ ++  R 
Sbjct: 349 GKDLLIEEVAQHIGVISYELITKLTPRV 376


>gi|331652220|ref|ZP_08353239.1| alanine racemase [Escherichia coli M718]
 gi|331050498|gb|EGI22556.1| alanine racemase [Escherichia coli M718]
          Length = 356

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 163/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CSLALRVP 352


>gi|282860859|ref|ZP_06269925.1| alanine racemase [Streptomyces sp. ACTE]
 gi|282564595|gb|EFB70131.1| alanine racemase [Streptomyces sp. ACTE]
          Length = 384

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 95/381 (24%), Positives = 163/381 (42%), Gaps = 29/381 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R +IDL AL+ N   + A +  A+  AVVK +AYG G    A A   AG       + 
Sbjct: 8   RARAEIDLAALRANVRVLRARASGAQLMAVVKSDAYGHGALPCARAALEAGATWLGTATP 67

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR      R+        G  +   + ++   +S +           + G     
Sbjct: 68  QEALALREAGVGGRVMCWLWTPGGPWREAIEADIDVSVSGMWALREVVEAATAAGRPARV 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G    +  +    +   +     +++ + SH ACAD+P     + QL  
Sbjct: 128 QLKADTGLGRNGCQPADWPELVSAARGAEEAGTLRVTGLWSHFACADEPGHPSIAAQLTA 187

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---- 232
           FR ++++   +G+      +A+S   L  P  HF L R GI++YG +       P     
Sbjct: 188 FRDMVAYAEKEGVRPEVRHIANSPATLTLPESHFDLVRTGIAMYGLSPSPALGTPADFGL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T  A + L+++   G  +SYG     + ++ +A+  +GYADG P   SG       
Sbjct: 248 RPVMTLSASVALVKEVPPGHGISYGHHYTTSAETTLALVPLGYADGIPRHASGR------ 301

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                G   I G +  + G++ MD  + D+        G    +FGP    +   +D A+
Sbjct: 302 -----GPVLIDGAVRTVAGRVAMDQFVVDLGGDTP-RPGARAVLFGPGDQGEPGAEDWAV 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A+ T  Y+++ RI  R  + +
Sbjct: 356 AADTIGYEIVTRISGRVPRVH 376


>gi|150017611|ref|YP_001309865.1| alanine racemase [Clostridium beijerinckii NCIMB 8052]
 gi|149904076|gb|ABR34909.1| alanine racemase [Clostridium beijerinckii NCIMB 8052]
          Length = 376

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 169/382 (44%), Gaps = 29/382 (7%)

Query: 5   EFLR--LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           E+ R   KIDL A+ +N +        N +  A++K + YG G  ++   L +  V  + 
Sbjct: 3   EYFRTYAKIDLEAILHNINEAKKRIERNVKIMAIIKADGYGHGAAELGDFLKSE-VDYYG 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
           V ++EE ++LR    +  I +L    P Q   +   N+   + +       SK  + C  
Sbjct: 62  VATLEEALELRKSGIELPILILGYTSPSQYIEVVKNNITQTVYNTEMAKEMSKAGAICKK 121

Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + +DTG  R+G    ++ +             +  + +H A AD+     + +Q+
Sbjct: 122 EAKVHIALDTGMTRIGFDANEDGIAEVQEILTFSNLVVEGLFTHFATADEADKSYSKLQI 181

Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231
            ++   ++  +  +       + +S+GI+   ++ F + R GI  YG          +  
Sbjct: 182 SKYDKFVALLEERDINIPIKHMCNSAGIMEFDHHRFDMVRCGIITYGLYPSEEVNKNAIT 241

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +  +  +I +    AG  VSYG       ++ IA  ++GYADGYP  LS       
Sbjct: 242 LKPALQWKTHVINVNIVDAGHGVSYGKTYITKNETKIATLSVGYADGYPRALS------- 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 G+  I G   PI+G+I MD  M D+T   ++++ D + + G D    I ++++A
Sbjct: 295 ----SKGRVLIHGKYAPIIGRICMDQMMVDVTHIDNVKIEDEVTLVGKDGENIIYVEELA 350

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             +G+ NY+ +  IG R  + Y
Sbjct: 351 NMAGSFNYEFVCGIGKRVQRLY 372


>gi|300691641|ref|YP_003752636.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum PSI07]
 gi|299078701|emb|CBJ51360.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum PSI07]
          Length = 375

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 156/367 (42%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL NN       + ++R  AVVK NAYG G E+    L       F +  
Sbjct: 3   RPIQAVIHGPALANNLQVARRHAPDSRVWAVVKANAYGHGIERAYEGLRQ--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V+LR    Q  + +L G   P    ++    L   +    QL    +L        
Sbjct: 61  LDEAVRLRQLGWQGPVLLLEGFFKPEDLALVEQYRLATTVHCEEQLRML-ELARLKGPVS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG +RLG +          +         + ++H + AD P       QL  F 
Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G EASL++S+  L  P  H    RPG+ LYG +        +   +   +T +
Sbjct: 178 RATQGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGVAADIEGTGLMPAMTLK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I I+    G  + YG + ++ +   I V A GYADGYP    G    H+P       
Sbjct: 237 SELIAIQDLPPGATIGYGSRFQVEQPMRIGVIACGYADGYPRHAPGWGGNHTP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+       VG  + ++G  + +D+VA A+GT  Y+L+ 
Sbjct: 290 VLVGGVRTRMVGRVSMDMITVDLAGVPDARVGTPVTLWGQGLPIDEVAHAAGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALAPRVP 356


>gi|17546090|ref|NP_519492.1| alanine racemase [Ralstonia solanacearum GMI1000]
 gi|20137209|sp|Q8XZM4|ALR_RALSO RecName: Full=Alanine racemase
 gi|17428386|emb|CAD15073.1| probable alanine racemase protein [Ralstonia solanacearum GMI1000]
          Length = 375

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 159/367 (43%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL NN   +   + ++R  AV+K NAYG G E+    L       F +  
Sbjct: 3   RPIQAVIHGPALVNNLQVVRRHAADSRVWAVIKANAYGHGIERAYEGLRQ--ADGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V+LR    Q  I +L G   P    ++    L   +    QL    +L        
Sbjct: 61  LDEAVRLRQLGWQGPILLLEGFFKPEDLALVEQYRLTTTVHCEEQLRML-ELARLKGPVS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG +RLG +         ++         + ++H + AD P       QL  F 
Sbjct: 120 IQLKINTGMSRLGFAPAAYRAAWEHARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G EASL++S+  L  P  H    RPG+ LYG +        +   +   +T +
Sbjct: 178 QATQGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGVAADIEGTGLMPAMTLK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G  V YG + +  +   I + A GYADGYP    G D  ++P       
Sbjct: 237 SELIAVQDLQPGATVGYGSRFEAEQPMRIGIVACGYADGYPRHAPGWDGNYTP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+ +     VG  + ++G  + +D+VA A+GT  Y+L+ 
Sbjct: 290 VLVDGVRTRMVGRVSMDMITVDLAEVPGARVGAPVTLWGQGLPIDEVAHAAGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALAPRVP 356


>gi|237731822|ref|ZP_04562303.1| alanine racemase [Citrobacter sp. 30_2]
 gi|226907361|gb|EEH93279.1| alanine racemase [Citrobacter sp. 30_2]
          Length = 356

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   IDL ALK N       + +AR  +VVK NAYG G E++  AL       F + +
Sbjct: 3   RPILASIDLQALKQNLTITRQAAPDARVWSVVKANAYGHGIERVWNAL--GTTDGFAMLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G    ++  ++D   L   + S  QL              
Sbjct: 61  LEEAITLRERGWKGPILMLEGFFHAEDLTVYDNYRLTTCVHSNWQLKALQNAR-LKAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG   +                   ++SH A A+ P        + R  
Sbjct: 120 VYLKVNSGMNRLGFLPERVPTVWQQLRAMPNVGEMTLMSHFADAEHPEGI--QEAMARIA 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                 +    SL++S+  L  P  H+   RPGI LYG +         +  ++ V+T  
Sbjct: 178 QATEELEC-RRSLSNSAATLWHPEAHYDWVRPGIILYGASPSGQWRDIANTGLKPVMTLS 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II I+   AG+ V YGG+   + +  I + A GYADGYP                G  
Sbjct: 237 SEIIGIQTLKAGDRVGYGGRYTASGEQRIGIVATGYADGYPRHA-----------PSGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+ 
Sbjct: 286 VLVDGVRTGTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVATAAGTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 SLALRVP 352


>gi|315149610|gb|EFT93626.1| alanine racemase [Enterococcus faecalis TX0012]
          Length = 371

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 151/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVETAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
           T ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  TLLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|323977248|gb|EGB72335.1| alanine racemase [Escherichia coli TW10509]
          Length = 356

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQYRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPEGIAGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|253576997|ref|ZP_04854320.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843607|gb|EES71632.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 392

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 159/384 (41%), Gaps = 30/384 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                +IDL AL++N+  +     + +  A VK NAYG G   +A  L   G     V  
Sbjct: 6   RPTHAEIDLDALRSNFEELRRRQQDMKMLACVKANAYGHGAVPVAKELEQIGADYLSVAF 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-- 122
           ++E ++LR    Q  I VL    P   +  ++ ++   + S   L     L      H  
Sbjct: 66  LDEALELRKAGIQLPILVLGYTPPHGVRTAWEHDVTLNVFSNEVLEAIEALNPAEFPHKL 125

Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++D+G  R+GL    EA+ F   +      ++  + +H A AD+        Q  R
Sbjct: 126 KVHIKIDSGMGRVGLLPGDEAVAFVRKAMQVPHVEVEGLFTHYATADEEDKSYTLEQYRR 185

Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---Q 233
           F+ ++   +            +S+  +  P    Q+ R GI+LYG               
Sbjct: 186 FQGVVEALREHNIRIPIIHTGNSAIAIDMPELSVQMVRIGIALYGLYPSDEVRRDQVKLT 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++ +   + ++   A   +SYG +    ++  IA   IGYADGY   L+G        
Sbjct: 246 PVLSLKTETVRVKTLPAHSAISYGARYITEQEERIATLPIGYADGYSRMLNG-------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIF----GPDIKLDD 345
                +  I+G  VP+ G I MD  M  +     ++  I+ G+ + +     G +I   +
Sbjct: 298 ---KAQVLIRGRRVPVTGVICMDQCMVSLQALAEEAEEIQAGEEVVLIGRQAGEEITAGE 354

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A A GT +Y+L+  +  R  + Y
Sbjct: 355 LASAMGTIHYELICMLAHRVPRVY 378


>gi|237748485|ref|ZP_04578965.1| alanine racemase [Oxalobacter formigenes OXCC13]
 gi|229379847|gb|EEO29938.1| alanine racemase [Oxalobacter formigenes OXCC13]
          Length = 359

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 159/369 (43%), Gaps = 21/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   ID+ A+++N   + +    A+   VVK NAYG G E+   AL       F +  
Sbjct: 3   RPLVANIDIAAMQHNLSVVRSTVPRAKIWGVVKANAYGHGLERSVRAL--NDADGFALIE 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +E  + LR    +  I +L G     E  I+   N+   +    Q+    K     +   
Sbjct: 61  MESAIHLREIGWKKPILLLEGFFYAHELPILARYNIAFAVHCDEQIDMLEK-SRLDLPVD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L+++TG NRLG    E              +    ++H A ++           QL+R
Sbjct: 120 VHLKMNTGMNRLGFLPAEYSKAYERLKKIPNVREISHMTHFANSEVSGHKKMSVEEQLKR 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAE 239
           F +  +   G+   L++S  ILL P       RPG+ LYGGT   K  + + ++ V+T  
Sbjct: 180 FDSGSAGLPGVRN-LSNSGAILLHPQLRTDWVRPGVMLYGGTPGGKTAEEYGLKPVMTLS 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II I+    G+ V YG     T    I V A GYADGYP                G  
Sbjct: 239 SEIIQIQNINEGDSVGYGSIFTATGPMKIGVVACGYADGYPRMA-----------PEGTH 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T      VG  + ++G ++ +D+VA A+GT  Y+L+ 
Sbjct: 288 VIVDGVKTRLVGRVSMDMITVDLTPVKDAHVGSKVTLWGNELPIDEVAEAAGTVGYELMC 347

Query: 360 RIGTRYAKF 368
            +  R  + 
Sbjct: 348 ALSLR-PRI 355


>gi|86748627|ref|YP_485123.1| alanine racemase [Rhodopseudomonas palustris HaA2]
 gi|86571655|gb|ABD06212.1| alanine racemase [Rhodopseudomonas palustris HaA2]
          Length = 388

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 202/373 (54%), Gaps = 18/373 (4%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           H +    L IDL A++ N+  +  +     R   VVK +AYGLG  ++APALY AG +DF
Sbjct: 5   HRHAGATLTIDLAAIRWNYRRLAEMVGPKVRCGGVVKADAYGLGARQVAPALYGAGCRDF 64

Query: 61  FVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           +V  ++E + LR + P  A I VL G+  G E    D  ++PV++S+ QL  +S      
Sbjct: 65  YVAHLDEALDLRPHLPPDASIVVLNGLPRGGEDDCADAGIVPVLNSLAQLDDWSACARKA 124

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G      +Q+D+G +RLGLS +E  + +H     +   + L++SHLACAD      N+ Q
Sbjct: 125 GRVLGAIVQIDSGMSRLGLSPRELDELSHARL--RGIDIRLVMSHLACADVADHAANAYQ 182

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
             RF  L   + GI  SLA+SSGI LGP++H+   RPG +LYG     ++ +PM+ VV  
Sbjct: 183 RARFCALADRFGGIPKSLANSSGIFLGPDFHYDAARPGAALYGINPTSSRPNPMRPVVRL 242

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A I+  R+  AG+ V YG   ++ R S +A  +IGYADG    L              G
Sbjct: 243 AAAIVQTREIEAGDHVGYGWDFRVERPSRLATLSIGYADGLHRALG-----------RAG 291

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYD 356
             + +G  + I G+++MD    D+ D  +  +  G  I++ GP   +D++A ASGT  Y+
Sbjct: 292 AVYFEGRALAIAGRVSMDSITVDLGDLPAERLGRGAEIELIGPHQSVDELASASGTIGYE 351

Query: 357 LLVRIGTRYAKFY 369
           +L  +G R+ + Y
Sbjct: 352 ILTSLGDRFRRIY 364


>gi|300859953|ref|ZP_07106041.1| alanine racemase [Enterococcus faecalis TUSoD Ef11]
 gi|300850771|gb|EFK78520.1| alanine racemase [Enterococcus faecalis TUSoD Ef11]
 gi|315145182|gb|EFT89198.1| alanine racemase [Enterococcus faecalis TX2141]
 gi|315163090|gb|EFU07107.1| alanine racemase [Enterococcus faecalis TX0645]
          Length = 371

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 150/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-YSKLM-SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L     +L      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEATLQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|148543492|ref|YP_001270862.1| alanine racemase [Lactobacillus reuteri DSM 20016]
 gi|184152900|ref|YP_001841241.1| alanine racemase [Lactobacillus reuteri JCM 1112]
 gi|227363641|ref|ZP_03847755.1| alanine racemase [Lactobacillus reuteri MM2-3]
 gi|325681836|ref|ZP_08161355.1| alanine racemase [Lactobacillus reuteri MM4-1A]
 gi|166969414|sp|A5VI51|ALR_LACRD RecName: Full=Alanine racemase
 gi|226711051|sp|B2G5M9|ALR_LACRJ RecName: Full=Alanine racemase
 gi|148530526|gb|ABQ82525.1| alanine racemase [Lactobacillus reuteri DSM 20016]
 gi|183224244|dbj|BAG24761.1| alanine racemase [Lactobacillus reuteri JCM 1112]
 gi|227071310|gb|EEI09619.1| alanine racemase [Lactobacillus reuteri MM2-3]
 gi|324978927|gb|EGC15875.1| alanine racemase [Lactobacillus reuteri MM4-1A]
          Length = 375

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 94/383 (24%), Positives = 157/383 (40%), Gaps = 31/383 (8%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N  LR   L +DL AL++N       L  N++  AVVK NAYG G   +A     +G   
Sbjct: 3   NGRLRDTSLIVDLDALRHNIQEQKKVLPENSKILAVVKANAYGNGLIPVAQTAMTSGASG 62

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLM 116
             V  ++E ++LR    +A   VL         I     +   + S   + Q    +++ 
Sbjct: 63  LCVAILDEALELRDNGIEAMTLVLGITSVEDALIAAQAGVSLTVGSLDWLEQYHQLAQVA 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                    L +D+G  R+G +   A        +    +   + +H A AD P  +  +
Sbjct: 123 KPKKPLKVHLGIDSGMGRIGFTEVAAFKQAVKLLDSPEFEFEGMFTHFATADSPDENYFN 182

Query: 177 VQLERFRTLISHYKGIEA--SLASSSGILLGPNYHF-QLTRPGISLYGGTDK---INKSH 230
            Q++R+   ++    +     +A+S+  L           R GIS+YG       +  + 
Sbjct: 183 QQVQRWHQFVASLAELPPYVHMANSATGLWHRETITANTIRMGISMYGQNPSGRDLKLTL 242

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q V +  + I  +++  AG  VSYG      +D  +A   IGYADGYP  ++G     
Sbjct: 243 DLQPVSSLVSSISFVKQLKAGRSVSYGATYTAEQDEWLATLPIGYADGYPRCMTGY---- 298

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                   K  + G    I G++ MD  M  +     +  G  + + G     +I   D+
Sbjct: 299 --------KVLVDGQFCDIAGRVCMDQMMIRLPKYYPV--GTPVVLMGKSGDQEITATDL 348

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +GT NY++L  I  R  + Y
Sbjct: 349 AERAGTINYEILTNISNRVHRIY 371


>gi|71275083|ref|ZP_00651370.1| Alanine racemase [Xylella fastidiosa Dixon]
 gi|170731066|ref|YP_001776499.1| alanine racemase [Xylella fastidiosa M12]
 gi|71163892|gb|EAO13607.1| Alanine racemase [Xylella fastidiosa Dixon]
 gi|167965859|gb|ACA12869.1| Alanine racemase [Xylella fastidiosa M12]
          Length = 369

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 175/370 (47%), Gaps = 21/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                 IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  
Sbjct: 9   RPAHAVIDLDALRHNYRFARRLGGG-KALAVVKADAYGHGAVRCAQAL-EAEVDGFAVAC 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    QA I +L G    +E ++I   NL  VI+S  Q+   +          
Sbjct: 67  IEEALELRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAF-HSPSPIG 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGL  +E  D   +  +       ++++HLA AD+  +   + Q   F 
Sbjct: 126 VWLKLDSGMHRLGLEPKEFRDAWMSLHSLPQVGEVVLMTHLARADELDNPRTNEQASVFA 185

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
                     AS+ +SSG+L     +    RPG+ LYG      +S     P++ V+   
Sbjct: 186 HASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVY 244

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R+  AGE V YG      R + + V A+GYADGYP                G  
Sbjct: 245 SKLIAVRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTP 293

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL 
Sbjct: 294 LLVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLC 353

Query: 360 RIGTRYAKFY 369
            +  R  ++Y
Sbjct: 354 GL-KRVRRYY 362


>gi|229546693|ref|ZP_04435418.1| alanine racemase [Enterococcus faecalis TX1322]
 gi|229308178|gb|EEN74165.1| alanine racemase [Enterococcus faecalis TX1322]
          Length = 371

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 150/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSIVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|182682437|ref|YP_001830597.1| alanine racemase [Xylella fastidiosa M23]
 gi|182632547|gb|ACB93323.1| alanine racemase [Xylella fastidiosa M23]
 gi|307578720|gb|ADN62689.1| alanine racemase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 362

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 175/370 (47%), Gaps = 21/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                 IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  
Sbjct: 2   RPAHAVIDLDALRHNYRFARRLGGG-KALAVVKADAYGHGAVRCAQAL-EAEVDGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    QA I +L G    +E ++I   NL  VI+S  Q+   +          
Sbjct: 60  IEEALELRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAF-HSPSPIG 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGL  +E  D   +  +       ++++HLA AD+  +   + Q   F 
Sbjct: 119 VWLKLDSGMHRLGLEPKEFRDAWMSLHSLPQVGEVVLMTHLARADELDNPRTNEQASVFA 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
                     AS+ +SSG+L     +    RPG+ LYG      +S     P++ V+   
Sbjct: 179 HASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVY 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R+  AGE V YG      R + + V A+GYADGYP                G  
Sbjct: 238 SKLIAVRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTP 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL 
Sbjct: 287 LLVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLC 346

Query: 360 RIGTRYAKFY 369
            +  R  ++Y
Sbjct: 347 GL-KRVRRYY 355


>gi|229096607|ref|ZP_04227578.1| Alanine racemase [Bacillus cereus Rock3-29]
 gi|229115582|ref|ZP_04244988.1| Alanine racemase [Bacillus cereus Rock1-3]
 gi|228667995|gb|EEL23431.1| Alanine racemase [Bacillus cereus Rock1-3]
 gi|228686813|gb|EEL40720.1| Alanine racemase [Bacillus cereus Rock3-29]
          Length = 408

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 161/376 (42%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AGV    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKHVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E ++LR       I +L        +     +++  +  +  L   +++           
Sbjct: 88  EAIELREAGITVPILILGYTSVAAAESAIQYDVMMTVYRIEDLQGINEIAQRLQNKARIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++    +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTANELGMQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  ++ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHVKHATKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D+T ++ ++VGD +  +G      I +++VA    T 
Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVTKAMPVQVGDDVVFYGKQGEEEIAVEEVADMLSTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|157828002|ref|YP_001494244.1| alanine racemase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932698|ref|YP_001649487.1| alanine racemase [Rickettsia rickettsii str. Iowa]
 gi|166969428|sp|A8GQR1|ALR_RICRS RecName: Full=Alanine racemase
 gi|189027390|sp|B0BW55|ALR_RICRO RecName: Full=Alanine racemase
 gi|157800483|gb|ABV75736.1| alanine racemase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907785|gb|ABY72081.1| alanine racemase [Rickettsia rickettsii str. Iowa]
          Length = 355

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 182/365 (49%), Gaps = 21/365 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+L+ +KNN+  +  +   +   A VK N YGLG  +I+ AL     + FFV S EEG
Sbjct: 6   VEINLSTIKNNYLLLQDVCKTSLVGAAVKANGYGLGAIQISKALIEENCRHFFVASSEEG 65

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           V LR        I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 66  VNLRNALGLDINILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGLS  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            ++  ++ASLA+S GI LG +YHF L RPG +LYG              VT +A II ++
Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPLTKNP------VTLKAPIIHLQ 239

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
                  + Y       RDS+IA   +GYADG+    S             G+ FI    
Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRS 288

Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VPI+G+++MD+   D+TD    E+  G   +I G     + +A   GT  Y++L  +G+R
Sbjct: 289 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPNKIASIIGTIGYEVLTNLGSR 348

Query: 365 YAKFY 369
           Y + Y
Sbjct: 349 YKRKY 353


>gi|333007517|gb|EGK26995.1| alanine racemase [Shigella flexneri K-272]
 gi|333019899|gb|EGK39171.1| alanine racemase [Shigella flexneri K-227]
          Length = 356

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 161/368 (43%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+    L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYGQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 GIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|299133317|ref|ZP_07026512.1| alanine racemase [Afipia sp. 1NLS2]
 gi|298593454|gb|EFI53654.1| alanine racemase [Afipia sp. 1NLS2]
          Length = 383

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 206/377 (54%), Gaps = 19/377 (5%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSGNARTAA-VVKDNAYGLGCEKIAPALYNAG 56
           M  N   R   L +DL A+++N+  + +    +   A VVK + YGLG   ++ AL+  G
Sbjct: 1   MEKNGRFRGGTLAVDLRAVRSNYRLLRSRLRASTLCAGVVKADGYGLGATYVSRALFAEG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK- 114
            + FFV  ++EG+ LR Y P+ A IF+L G+  G E+      L+PV++S  Q   ++  
Sbjct: 61  CRHFFVAHLDEGLALRPYLPRSAAIFILNGLPRGAERECAAAGLVPVLNSPEQAGAWAGC 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
             + G   P  LQVD+G NRLGL+  EA  F        +  L  I+SHLACAD P+   
Sbjct: 121 ARTRGQRLPAVLQVDSGMNRLGLTAGEAARFAETPARSGVVDLRYIMSHLACADTPAHEA 180

Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           N++QL  FR L   +  +  SLA+SSGI LGP+YHF L RPG +LYG       ++PMQ+
Sbjct: 181 NAMQLATFRQLAGLFPDVPRSLANSSGIFLGPDYHFSLVRPGSALYGVNPDPAATNPMQS 240

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           VV   A++I +R  + G+ V YG   +   ++ +A  ++GYADG+               
Sbjct: 241 VVRLTAKVIQLRNVMPGDCVGYGWDARARGEARLATLSLGYADGFHRAWG---------- 290

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG--DYIQIFGPDIKLDDVALASGT 352
             GG  F +G  +P++G+++MD  + D +      +G    +++ G D  LDD+A  +GT
Sbjct: 291 -KGGAVFFEGLRLPVVGRVSMDSIVIDASAIAPGRLGPDSEVEVIGDDQPLDDLASVAGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +G+RY + Y
Sbjct: 350 IGYEVLTGLGSRYQRIY 366


>gi|20137236|sp|Q9FCV2|ALR_LACRE RecName: Full=Alanine racemase
 gi|9798537|emb|CAC03497.1| alanine racemase [Lactobacillus reuteri]
          Length = 375

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 150/377 (39%), Gaps = 25/377 (6%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL +D  A++ N    +  L   +   AVVK N YG G   +A     AG   F V
Sbjct: 6   HRASRLVVDAAAIRQNVKKEIERLDPQSELFAVVKANGYGHGLIPVARYTEQAGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR       I VL   +     +  + N+   +  V  LT  +  ++     
Sbjct: 66  AILDEALTLREAGFAEPILVLGITNVKWAALAAEKNVSLTVGDVEWLTKAAPQLTAEHPL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +DTG  R+G    + L+       N        + +H A AD+      ++Q++R
Sbjct: 126 KVHLALDTGMGRIGFQESDGLNQAAELLTNDPRFVFEGVFTHFATADEKDPTYFNLQVDR 185

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F  L+           +++++  L     +  L R G+ +YG       +   + +Q  +
Sbjct: 186 FHKLVDTLPEKPRYVHVSNTATSLWHAACNGNLIRFGVGIYGMNPSGTVLEPPYDLQPAM 245

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+++   +    G  VSYG    + +D  I    IGYADGYP  L G           
Sbjct: 246 TLESQLSFSKLLKKGRSVSYGATYTVEQDEWIGTVPIGYADGYPRCLQGF---------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI----FGPDIKLDDVALASGT 352
                + G+   I+G++ MD  M  +        G  + +     G  I + D+A  +GT
Sbjct: 296 --HVLVDGHFCEIVGRVCMDQLMIRLPHEYPA--GTSVILAGKSQGKSISMTDIADYAGT 351

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++      R  + Y
Sbjct: 352 INYEITCGFTERIPRVY 368


>gi|331646502|ref|ZP_08347605.1| alanine racemase [Escherichia coli M605]
 gi|281178345|dbj|BAI54675.1| alanine racemase [Escherichia coli SE15]
 gi|330911052|gb|EGH39562.1| alanine racemase, catabolic [Escherichia coli AA86]
 gi|331045254|gb|EGI17381.1| alanine racemase [Escherichia coli M605]
          Length = 356

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L     HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHQEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|331657235|ref|ZP_08358197.1| alanine racemase [Escherichia coli TA206]
 gi|315297316|gb|EFU56596.1| alanine racemase [Escherichia coli MS 16-3]
 gi|331055483|gb|EGI27492.1| alanine racemase [Escherichia coli TA206]
          Length = 356

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARV 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 DQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|311031137|ref|ZP_07709227.1| alanine racemase [Bacillus sp. m3-13]
          Length = 389

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 92/384 (23%), Positives = 153/384 (39%), Gaps = 29/384 (7%)

Query: 1   MHS-NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M S +    +++DL  +  N  ++      +    AVVK NAYG G  ++A     AG +
Sbjct: 1   MSSFHRDTWVEVDLDCIYENVQAIQEHVTKDVTVIAVVKANAYGHGDVQVANVALEAGAK 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              V+ ++E + LR     A I VL         +    ++   +     +   +     
Sbjct: 61  YLAVSFLDEAMSLRQQGITAPILVLGASRVSDLPLAAKEDITLTVFQKEWVEEATSAYQG 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSV 177
                  L++DTG  R+G   QE +       +K    Q+  I +H A AD+  S     
Sbjct: 121 TEVVKLHLKLDTGMGRIGARTQEEVAQILELIDKAPNLQIEGIYTHFATADELQSSYVEQ 180

Query: 178 QLERF----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKS 229
           Q ERF      + + Y        +S+  L  P   F   R GI++YG T     +    
Sbjct: 181 QFERFHSLLNQVTNQYSIPMIHCGNSATTLRFPTRIFNAVRVGIAMYGLTPSLEMEPELP 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            P++   +   +++ ++K   GE VSYG       +  I    +GYADG+   L G++  
Sbjct: 241 FPLKEAFSLHTKLVHVKKLSIGESVSYGATYTTKEEEWIGTVPVGYADGWIRKLQGMNI- 299

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       + G   PI+G+I MD  M  +   L   +G  + + G      I  +D
Sbjct: 300 -----------LVDGKFAPIVGRICMDQFMVKLPHELP--IGTKVTLIGKQDGKKISSND 346

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA    T NY++   I  R  + +
Sbjct: 347 VAAKLDTINYEVPCMISYRVPRMF 370


>gi|166713563|ref|ZP_02244770.1| alanine racemase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 366

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 167/370 (45%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                 IDL AL++N+     L G ++  AVVK +AYG G  + A AL       F V  
Sbjct: 2   RPAHASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQAL-EPEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L G     E ++I + +L  V ++  Q+   +   S      
Sbjct: 60  IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQS-PRPLR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGLS ++                 ++++HLA AD+        Q   F 
Sbjct: 119 VWLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDQQAVAF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
            L +     E SL +S G+L  P      +RPG+ LYG       +      + V+T  +
Sbjct: 178 ALSAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQLRPVMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R    GE V YG +    R + + V A+GYADGYP                G   
Sbjct: 238 RIISVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G + P++G+++MDM   D+TD     +G  +Q++G   ++  +A     + Y LL  
Sbjct: 287 LVDGQVCPLIGRVSMDMLTVDLTDHPQAAMGATVQLWGQAPRVGPLATQCNVSAYQLLCG 346

Query: 361 IGTRYAKFYT 370
           +  R  + Y 
Sbjct: 347 L-KRVPRTYV 355


>gi|222107011|ref|YP_002547802.1| alanine racemase [Agrobacterium vitis S4]
 gi|221738190|gb|ACM39086.1| alanine racemase [Agrobacterium vitis S4]
          Length = 374

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 137/374 (36%), Positives = 203/374 (54%), Gaps = 16/374 (4%)

Query: 1   MHSNEF-LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+++ F  RL IDL AL +N+  + A +  A T+AVVK +AYGLG  ++ PALY AG + 
Sbjct: 9   MNADAFSARLVIDLDALADNYRQLAAETTPAETSAVVKADAYGLGAARVGPALYRAGCRK 68

Query: 60  FFVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           FFV +V+E   LR + P  A +F+L G+ PG E        IPV++S+ QL  +SK+ S 
Sbjct: 69  FFVANVQEAAGLRQHLPGDAELFILNGLQPGAEPFAAANGFIPVLNSLEQLANWSKMASE 128

Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G + P  LQ DTG +RLG S +EA     +        +  I+SHLA ADD +S  N+ 
Sbjct: 129 FGRTLPAILQFDTGMSRLGFSPEEANVLAGDPALLSGLSIRYIMSHLASADDSASTQNAA 188

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           Q    R  ++ + GI    ++S GI +   +H  L RPG++LYG          M+ VV 
Sbjct: 189 QFSVMRERLAQFPGIALCFSNSGGIFIDKQFHGALVRPGVALYGAVPSDLAGRRMKPVVR 248

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +A++I  R   AG  V YG     T+++ +A  AIGYADG P  LS             
Sbjct: 249 VDAKVIQTRTVPAGACVGYGATYVATKETRLATIAIGYADGLPRCLSDR----------- 297

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G  +     +PI+G+++MD    DI+      + +G  +++ GP   L+DVA A+GT  Y
Sbjct: 298 GAAYYGDIRLPIVGRVSMDSMTLDISALPPGTLTLGSLVEMIGPHQSLEDVAQAAGTIAY 357

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +G RY + Y
Sbjct: 358 EILTSLGHRYHRDY 371


>gi|254238354|ref|ZP_04931677.1| biosynthetic alanine racemase [Pseudomonas aeruginosa C3719]
 gi|126170285|gb|EAZ55796.1| biosynthetic alanine racemase [Pseudomonas aeruginosa C3719]
          Length = 358

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 171/370 (46%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  
Sbjct: 2   RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R     ARI +L G     E  +     L  VI    Q   +       +   
Sbjct: 61  LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAA-GLDIPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +     N    +   +ISH ACAD+ +  +   QLE F 
Sbjct: 120 VWLKLDSGMHRLGFDPAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L+      + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A
Sbjct: 180 GLLD-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+   GE V YG      R + I   + GYADGYP            +   G   
Sbjct: 239 QLISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL +
Sbjct: 288 LVGGRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSK 347

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 348 VTARVPRHYS 357


>gi|207723325|ref|YP_002253724.1| alanine racemase protein [Ralstonia solanacearum MolK2]
 gi|206588523|emb|CAQ35486.1| alanine racemase protein [Ralstonia solanacearum MolK2]
          Length = 375

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 159/367 (43%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL NN       + ++R  AVVK NAYG G E++   L       F +  
Sbjct: 3   RPIQAVIHGPALANNLQVARRHAPDSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V+LR    Q  + +L G   P    ++    L   +    QL    +L        
Sbjct: 61  LDEAVRLRQLGWQGPVLLLEGFFKPEDLALVEQYRLTTTVHCEEQLRML-ELARLKGPVS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG +RLG +          +         + ++H + AD P       QL  F 
Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G EASL++S+  L  P  H    RPG+ LYG +        +   + + +T +
Sbjct: 178 QATQGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGMAADIEGTGLMSAMTLK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I I+    G  + YG + ++ +   I + A GYADGYP    G    H+P       
Sbjct: 237 SELIAIQDLQPGATIGYGSRFQVEQPMRIGIVACGYADGYPRHAPGWGGNHTP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+ +     VG  + ++G  + +D+VA A+GT  Y+L+ 
Sbjct: 290 VLVDGVRTRMVGRVSMDMITVDLAEVPGARVGTPVTLWGQGLPIDEVAHAAGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALALRVP 356


>gi|161829951|ref|YP_001596838.1| alanine racemase [Coxiella burnetii RSA 331]
 gi|189027533|sp|A9ND48|ALR_COXBR RecName: Full=Alanine racemase
 gi|161761818|gb|ABX77460.1| alanine racemase [Coxiella burnetii RSA 331]
          Length = 364

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 174/370 (47%), Gaps = 25/370 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                I++TALK+N   + AL+  +   A++K N YG G  ++A AL +A    F V  +
Sbjct: 3   RATATINVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVACI 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +E + LR    ++ I V+ G +   E        L  VI    Q++   K  +   S   
Sbjct: 61  DEALTLREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEK-TNLTSSLSV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFR 183
            L++DTG NRLG S++++    +        Q    +++HLA AD+ +     +Q++RF 
Sbjct: 120 WLKIDTGMNRLGFSVEQSPAVYNQLKTSSSIQKPIGLMTHLADADNENKTFTELQIKRFF 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--------KINKSHPMQTV 235
           ++     G   S+ +S+G    PN      RPGI LYG +         K       + V
Sbjct: 180 SVTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKKFRPV 238

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A+II I+     + V YG     + D  IA+ +IGY DGYP               
Sbjct: 239 MTLSAKIIAIKNRRQNDSVGYGCTWSCSEDMPIAIVSIGYGDGYPRHA-----------P 287

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G + P++G+++MDM   D+    + +VGD + ++G  + ++ +A  +GT  Y
Sbjct: 288 SGTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIAY 347

Query: 356 DLLVRIGTRY 365
           +LL +I  R 
Sbjct: 348 ELLCKITQRV 357


>gi|160939251|ref|ZP_02086602.1| hypothetical protein CLOBOL_04145 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438214|gb|EDP15974.1| hypothetical protein CLOBOL_04145 [Clostridium bolteae ATCC
           BAA-613]
          Length = 396

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 174/385 (45%), Gaps = 28/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+S   +   IDL A+++N  +M  +L  +A    VVK + YG G   +A A  +  V+ 
Sbjct: 1   MNSYSRVYASIDLDAVESNMRAMKDSLPPSASMIGVVKTDGYGHGAVPVARA-IDPYVKG 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           + V +++E + LR +  Q  I VL   H  + + +   ++ P +    +    S+  +  
Sbjct: 60  YAVATIDEAIILRRHGIQKMILVLGVTHESRFEDLVRYDIRPAMFRYEEAGKLSETAVKN 119

Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      L VDTG +R+G++  EA  D            +  + +H A AD+        
Sbjct: 120 GARANIHLAVDTGMSRIGMTPDEASADEAARISRLPGICIEGMFTHFARADEADKAFYEA 179

Query: 178 QLERFRTLISHY--KGIE---ASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHP 231
           Q +++R        +G++      ++S+GI+ G + +   + R GIS+YG       +  
Sbjct: 180 QYKKYREFCEMLCSRGVDIPIRHCSNSAGIVEGLDSNGLDMVRAGISIYGLYPSDEVARD 239

Query: 232 MQ---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
                  +  ++ I  I+    G  VSYGG     R   +A   +GY DGY  +LS    
Sbjct: 240 RVKLVPAMELKSFITYIKTIGPGTAVSYGGTFVADRPMRVATIPVGYGDGYLRSLSN--- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G    ILG+I MD  M D+TD    E GD + + G D    I ++
Sbjct: 297 --------KGAVLIRGKRAEILGRICMDQFMADVTDIPEAEEGDQVTLIGRDGEECITVE 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++A  SG  +Y+++ +IG R  + Y
Sbjct: 349 ELAALSGGFHYEIICQIGKRVPRVY 373


>gi|5690427|gb|AAD47082.1|AF165882_1 biosynthetic alanine racemase [Pseudomonas aeruginosa PAO1]
          Length = 358

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 171/370 (46%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  
Sbjct: 2   RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R     ARI +L G     E  +     L  VI    Q   +       +   
Sbjct: 61  LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAA-GLDIPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +     N    +   +ISH ACAD+ +  +   QLE F 
Sbjct: 120 VWLKLDSGMHRLGFDPAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L+      + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A
Sbjct: 180 GLLD-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+   GE V YG      R + I   + GYADGYP            +   G   
Sbjct: 239 QLISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL +
Sbjct: 288 LVGGRRALLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSK 347

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 348 VTARVPRRYS 357


>gi|168787693|ref|ZP_02812700.1| alanine racemase [Escherichia coli O157:H7 str. EC869]
 gi|261224927|ref|ZP_05939208.1| alanine racemase 2, PLP-binding protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261257216|ref|ZP_05949749.1| alanine racemase 2, PLP-binding protein [Escherichia coli O157:H7
           str. FRIK966]
 gi|189372430|gb|EDU90846.1| alanine racemase [Escherichia coli O157:H7 str. EC869]
          Length = 356

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/368 (28%), Positives = 161/368 (43%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I   L   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSVL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  ++D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|325473141|gb|EGC76337.1| alanine racemase [Treponema denticola F0402]
          Length = 379

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 160/384 (41%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              +  I L  L+ N   +   L+ N +    VK +AYG G  ++A A   AGV    V 
Sbjct: 2   RATKAIIHLDNLQYNIKEIKKRLNKNVKICLPVKADAYGHGAVRVAVAAIRAGVSYLAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           S++E V+LR     A I  L      +   +   ++ P++     +   ++         
Sbjct: 62  SIQEAVELREAGIVAPIISLSLPVLEEIPELLKYDIEPLVIDEEFINDLNRFAKKLNKKA 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS---HVNSVQL 179
              L++DTG  R+G S  EA+         +  +L  + +H A +D            Q+
Sbjct: 122 GVHLKIDTGMRRIGCSPMEAVKLAVQIDRAENLELKGVCTHFAVSDSTDEKNIKFTKKQI 181

Query: 180 ERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPM 232
             F+  I   K  GI       A+S  +L  P   F + RPGI +YG   +  +N    +
Sbjct: 182 SVFKDSIKEIKKAGINPGLIHAANSGAVLQYPEAQFDMVRPGILVYGYAPSPSLNSLIDL 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+    +++LI+K      VSY       +++ +A   IGYADG   +LSGL      
Sbjct: 242 KPVMELVTQVVLIKKIEKDTSVSYDRCWTAEKETFVATLPIGYADGLMRSLSGLKVRIGK 301

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-------DIKLDD 345
             F            PI+G+I MD  M DI  S  ++  D + IFGP       +    D
Sbjct: 302 DFF------------PIIGRICMDQCMIDIGASPWVQRWDEVCIFGPVSKEHPKNNTAQD 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  +GT  Y+L   I  R  + +
Sbjct: 350 LAKIAGTIPYELTCDINKRVPRIF 373


>gi|114319749|ref|YP_741432.1| alanine racemase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226143|gb|ABI55942.1| alanine racemase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 365

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 161/367 (43%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R +I L AL++N+  + + +  AR  AV+K + YG G +++A  L       F V+ 
Sbjct: 6   RPTRARIRLEALRHNYRLLRSSAPGARVMAVIKADGYGHGIDRVARTL-AGEADCFAVSG 64

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           V+E + +R       + +L G     E  +       PV+ S  Q+   +       S  
Sbjct: 65  VDEAMPIRAAGATQPVVLLGGFFAAAEIPLHVREGFQPVVHSWWQVEALASAGP-HESLD 123

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VD+G +RLG    E  +           +    ++HLA ADD  S     QL  F 
Sbjct: 124 VWIKVDSGMHRLGFLPGEVAEVHRRLTALPNLRQIGFLTHLAEADDRDSPRTLEQLRVFD 183

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEA 240
              +   G   S A+S+G L  P  H+   RPGISLYG +  I++  P    + V+T E+
Sbjct: 184 QACAGLPG-PRSAANSAGTLGWPAAHYDWVRPGISLYGASPFIDQGRPRPDLRPVMTLES 242

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +++  AG  + YG   +      + V AIGY DGYP                G   
Sbjct: 243 GLISVKRLPAGAPIGYGSTWRCPEAMPVGVVAIGYGDGYPRHA-----------PSGTPV 291

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    +LG+++MD+   D+        G  + ++G  +  + +A  +GT  Y+L  +
Sbjct: 292 RVDGVESQLLGRVSMDLITVDLRPCPEARPGAPVVLWGDGLPAETIAERAGTIAYELYCQ 351

Query: 361 IGTRYAK 367
           +  R  +
Sbjct: 352 VTPRAPR 358


>gi|228995614|ref|ZP_04155280.1| Alanine racemase [Bacillus mycoides Rock3-17]
 gi|228764186|gb|EEM13067.1| Alanine racemase [Bacillus mycoides Rock3-17]
          Length = 397

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56
           M  + F R   ++++L A+ NN   +  +   +    AVVK NAYG     +A     AG
Sbjct: 9   MGKSSFYRDTWVEVNLDAIYNNVTHIKEIIPESVEIFAVVKANAYGHDYVLVARTALEAG 68

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I V+    P    +  + ++   +     +    ++ 
Sbjct: 69  ATRLAVAFLDEALVLRRAGITAPILVIGPSPPRDVNVAAENDVALTVFQKEWVEEAVEIW 128

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +  +    +L  I +H A AD+  +   
Sbjct: 129 DSPFPMKFHINFDSGMGRIGIRERKELKEFLRSLEDAPFLELEGIYTHFATADEVETSYF 188

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  +      F   R GI++YG +  +    
Sbjct: 189 DKQYNTFLEQLSWLKAFGVNPTFIHTANSAATMRFDGITFNAVRIGIAMYGLSPSVEIRP 248

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++    +  I++ + G+ +SY    +   +  IA   IGYADG+   L G 
Sbjct: 249 YLPIKLEPALSLHTTVAHIKRVIKGDRISYNVTYRTKTEEWIATVPIGYADGWLRRLQGF 308

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  ++G  VPI+G+ITMD  M  +     + +G  + + G      I 
Sbjct: 309 ------------EVLVQGKRVPIVGRITMDQCMLHLP--CEVPLGTKVTLIGQQGDEYIS 354

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  S T NY+++  I  R  + +
Sbjct: 355 ATEVAEYSNTINYEIIATISFRVPRVF 381


>gi|183599314|ref|ZP_02960807.1| hypothetical protein PROSTU_02779 [Providencia stuartii ATCC 25827]
 gi|188021549|gb|EDU59589.1| hypothetical protein PROSTU_02779 [Providencia stuartii ATCC 25827]
          Length = 356

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 155/370 (41%), Gaps = 23/370 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I L    +N   +    G+A+  +V+K +AYG   + +  AL  +    F +  
Sbjct: 3   RPISAVIHLQNFTHNLSVVRQHVGHAKIWSVMKADAYGHSIKHVWKALAAS--DGFAILD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    +  I +L G   P   K+I    L   + S  QL              
Sbjct: 61  LNEAILLREQGWKGPILLLEGFFQPDDLKVIDQYQLTTAVHSYWQLDAIEN-RHFQNPIS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++++G NRLG    E     H     +  +   +++H A +D  +           +
Sbjct: 120 VYVKLNSGMNRLGFEPPEYAQVVHRLSAMENVETVTLMTHFANSDLSTG--TDKPHAIIK 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
             I         +A+S   L  P  H+   R G+ LYG +            ++  +T +
Sbjct: 178 QFIDG--QFPVCIANSGATLWHPKTHYDWVRSGVILYGASPSGRWQDIADKDLRATMTLQ 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II   +  AGE + YG +        IA  A GYADGYP                G  
Sbjct: 236 SQIIATHEIAAGESIGYGSKFTAPYPMKIATVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G   P+LG ++MDM   D+++  + ++GD ++++G ++ +DDVA A+GT  Y+L+ 
Sbjct: 285 IWLNGTRCPLLGTVSMDMLTIDVSECPTAKIGDRVELWGKNLPIDDVAQAAGTIGYELMC 344

Query: 360 RIGTRYAKFY 369
            +  R    Y
Sbjct: 345 ALAKRVPVVY 354


>gi|306834227|ref|ZP_07467347.1| alanine racemase [Streptococcus bovis ATCC 700338]
 gi|304423800|gb|EFM26946.1| alanine racemase [Streptococcus bovis ATCC 700338]
          Length = 368

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 173/378 (45%), Gaps = 27/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL  +  N  ++ A +  + +  AVVK NAYG G   +A A+++  V  F V
Sbjct: 6   HRPTKAVIDLDVICQNIDAVKANIPQDKKAFAVVKANAYGHGATNVAHAIHHL-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  I P +  +  D ++   ++S   L   ++        
Sbjct: 65  SNIDEALELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGISLAGL 124

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L+VD+G  R+G+ SL EA +   N   K    ++ I +H A AD+      + QLE 
Sbjct: 125 DVHLKVDSGMGRIGVRSLDEAENVIAN-LKKAGANVAGIFTHFATADEADDTKFNEQLEF 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVV 236
           F  L+ +     A    ++S+  +      F L R GI +YG      +++  +P++  +
Sbjct: 184 FTNLVDNLSDKPAIVHASNSATSIWHSETIFNLVRLGIVMYGLNPSGTELDLPYPLKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+ ++ ++   AG  V YG      ++  IA   IGYADG+   L G           
Sbjct: 244 SLESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G    I+G+++MD     + + L   +G  + + G +    I   D+A   GT
Sbjct: 295 ---VLVNGEFCEIVGRVSMDQITIRLPEKLP--IGTKVTLIGQESDKVISATDLAQKRGT 349

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY++L  +  R  + Y+
Sbjct: 350 INYEVLCLLSDRIPRVYS 367


>gi|256959977|ref|ZP_05564148.1| alanine racemase [Enterococcus faecalis Merz96]
 gi|293383728|ref|ZP_06629635.1| alanine racemase [Enterococcus faecalis R712]
 gi|293388796|ref|ZP_06633289.1| alanine racemase [Enterococcus faecalis S613]
 gi|312907057|ref|ZP_07766053.1| alanine racemase [Enterococcus faecalis DAPTO 512]
 gi|312978687|ref|ZP_07790414.1| alanine racemase [Enterococcus faecalis DAPTO 516]
 gi|256950473|gb|EEU67105.1| alanine racemase [Enterococcus faecalis Merz96]
 gi|291078804|gb|EFE16168.1| alanine racemase [Enterococcus faecalis R712]
 gi|291081953|gb|EFE18916.1| alanine racemase [Enterococcus faecalis S613]
 gi|310627042|gb|EFQ10325.1| alanine racemase [Enterococcus faecalis DAPTO 512]
 gi|311288394|gb|EFQ66950.1| alanine racemase [Enterococcus faecalis DAPTO 516]
          Length = 371

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 150/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N  +    L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQNECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPKSNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E           K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLNPEETKQAVRFVQFHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|307256278|ref|ZP_07538062.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865242|gb|EFM97141.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 374

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 164/380 (43%), Gaps = 31/380 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  
Sbjct: 2   KPATATISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMS------ 117
           + E ++++      +I ++ G    +E +         VI    QL    ++        
Sbjct: 61  LREALEIQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAEEWQQEQ 120

Query: 118 ----------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
                             L++DTG +RLG+  ++   F        L +    +SH + A
Sbjct: 121 QKGFWKRKAKIYFPINVWLKIDTGMHRLGVHPEQVDMFYQRLKACPLVESISFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225
           D+P       Q+  F    S Y   E S+++SSGIL     H+   RPGI ++G +    
Sbjct: 181 DEPDCGYTEKQIAIFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP     
Sbjct: 241 PITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYPRNAQ- 299

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                      G    + G +VPI+G+++MDM   D+      +VGD +  +G D+ +++
Sbjct: 300 ----------EGTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEE 349

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA   G  +Y+L+ ++  R 
Sbjct: 350 VAQHIGVISYELITKLTPRV 369


>gi|255308493|ref|ZP_05352664.1| alanine racemase [Clostridium difficile ATCC 43255]
          Length = 385

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 156/376 (41%), Gaps = 24/376 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +I+L  L+ N +++  L   + +   V+K +AYG G  ++A  L    V    V  
Sbjct: 7   PTWAEINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVAR 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123
             EG++LR       I  L        +      +   + S+      +++    G    
Sbjct: 67  TAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKAC 126

Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++D+G  R+G    E ++         +   L  + +H A AD+ S      Q   +
Sbjct: 127 VHVKIDSGMTRIGFQPNEKSVQEIIELNKLEYIDLEGMFTHFATADEVSKEYTYKQANNY 186

Query: 183 RTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQT 234
           + +       G++     +++S+ I+  P+    + R GI LYG             ++ 
Sbjct: 187 KFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLELRP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  +++I  I++   G  +SYG +   T    IA   IGYADG+              +
Sbjct: 247 AMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTR------------I 294

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTT 353
               K  IKG +  ++G+I MD  M  I   + I+VGD + +FG  ++  + +A   GT 
Sbjct: 295 QKNPKVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGEGEVTAERIAKDLGTI 354

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  I  R  + Y
Sbjct: 355 NYEVLCMISRRVDRVY 370


>gi|51246605|ref|YP_066489.1| alanine racemase [Desulfotalea psychrophila LSv54]
 gi|50877642|emb|CAG37482.1| related to alanine racemase [Desulfotalea psychrophila LSv54]
          Length = 373

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/383 (28%), Positives = 174/383 (45%), Gaps = 24/383 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N F  + +  +AL+ N+ +M   +    +  A+VK +AYG G  ++A AL +     
Sbjct: 1   MKRNSFNNVTVCRSALRKNFKTMQDKMGQGGKLMAMVKADAYGHGAVEVAKALQDVACSS 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
           F V  + E V LR       IFV+ G       ++FD  L PV+     +   S + +  
Sbjct: 61  FGVAEIREAVLLRDAGITGDIFVMLGFDLDAVGLMFDYRLTPVVHCYEDIVALSVEGVKR 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G      ++VDTG  RLG   ++ L   HN        ++ ++SH   AD  +S  +   
Sbjct: 121 GYEIGCHIKVDTGMRRLGFEPEQVLGVAHNISRLSGVFVAGMLSHFPEADVVNSPSSRDG 180

Query: 179 LERFRTLISHYK---GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHP 231
           + RF +L    K        LA+S G+L  P   F + R GIS+YG       +   + P
Sbjct: 181 IRRFASLDVVLKSEFSTVCHLANSGGVLNFPESLFDMGRSGISIYGYHPAGAIEGGGTSP 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
               ++  +RI+ ++K  AG  VSYG      R +L+AV   GY DGY  +LS       
Sbjct: 241 FIPAMSFRSRILQVKKVAAGTGVSYGHSYITKRPTLLAVLPTGYEDGYRRSLSN------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                  +  I+G   P+ G+I M+  + D+TD  ++  GD + + G      I  DD+A
Sbjct: 295 -----KAEVLIRGQRAPVRGQICMNACVVDVTDIENVTAGDEVVLLGEQGNERITADDIA 349

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
             + T +Y++L  +G    + Y 
Sbjct: 350 EWADTISYEILCMLGHTNNRLYV 372


>gi|283832821|ref|ZP_06352562.1| alanine racemase [Citrobacter youngae ATCC 29220]
 gi|291071417|gb|EFE09526.1| alanine racemase [Citrobacter youngae ATCC 29220]
          Length = 356

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 161/369 (43%), Gaps = 26/369 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   IDL ALK N       + +AR  +VVK NAYG G E++  AL       F + +
Sbjct: 3   RPILASIDLQALKQNLAITRQAAPDARVWSVVKANAYGHGIERVWNAL--GTTDGFAMLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G     +  ++D   L   + S  QL              
Sbjct: 61  LEEAITLRERGWKGPILMLEGFFHADDLKVYDKYRLTTCVHSNWQLKALQNAR-LNAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG                       ++SH A A+ P+        E   
Sbjct: 120 VYLKVNSGMNRLGFLPDRVSTVWQQLRAMPNVGEMTLMSHFADAEHPNGI-----QEAMT 174

Query: 184 TLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
            +    +G+E   SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T
Sbjct: 175 RIAQATEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II I+   AG+ V YGG+   + +  I + A GYADGYP                G
Sbjct: 235 LSSEIIGIQTLKAGDRVGYGGRYTASGEQRIGIVATGYADGYPRHA-----------PSG 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L
Sbjct: 284 TPVLVDGVRTTTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVASAAGTVGYEL 343

Query: 358 LVRIGTRYA 366
           +  +  R  
Sbjct: 344 MCSLALRVP 352


>gi|119900214|ref|YP_935427.1| alanine racemase [Azoarcus sp. BH72]
 gi|166919546|sp|A1KCI5|ALR_AZOSB RecName: Full=Alanine racemase
 gi|119672627|emb|CAL96541.1| alanine racemase [Azoarcus sp. BH72]
          Length = 353

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/362 (28%), Positives = 161/362 (44%), Gaps = 17/362 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                 IDL AL++N+    +  G  R  AVVK NAYG G  + A AL  A    F V  
Sbjct: 2   RPATALIDLDALRHNYRLARSRHGG-RALAVVKANAYGHGAVRCAQAL-AAEADGFAVAF 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E ++LR       I +L G+    E   +    L PV+    Q+    +  +      
Sbjct: 60  LDEALELRAAGITQTIVLLEGVFDAAELEQVVAHGLWPVVHHAAQIEMIEQA-ALARPLD 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NR G                       +++H A AD+P     + QL  F 
Sbjct: 119 IWLKVNSGMNRAGFVGDAVGSAWQRLRASGKVGEITLMTHFARADEPQVIATAEQLADFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
           T      G   SLA+S+ +L  P+ H    RPGI LYG      + + +Q V+T E+ +I
Sbjct: 179 TATRGLPG-PRSLANSAAVLGWPDAHADWARPGILLYGADPMPGEGNGLQPVMTLESGVI 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AG  + YG +    R   I + A+GYADGYP +              G    + 
Sbjct: 238 AVRDLAAGAPLGYGARYVAERPRRIGLVAMGYADGYPRSA-----------PDGTPVVVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ++G+++MDM   D+TD     +G  ++++G  + ++ VA  +GT  Y+LL  +  
Sbjct: 287 GQPSMLVGRVSMDMLTVDLTDLPQAGIGSRVELWGRQVPINQVAAGAGTIAYELLCNV-K 345

Query: 364 RY 365
           R 
Sbjct: 346 RV 347


>gi|307729311|ref|YP_003906535.1| alanine racemase [Burkholderia sp. CCGE1003]
 gi|307583846|gb|ADN57244.1| alanine racemase [Burkholderia sp. CCGE1003]
          Length = 356

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/367 (27%), Positives = 156/367 (42%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   I  +AL NN       +  ++  AVVK NAYG G  +  P L       F +  
Sbjct: 3   RPLSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARAFPGLRA--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE VKLR       I +L G   P    +I   +L   + S  QL    ++        
Sbjct: 61  LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRML-EMARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +   +      +++H + AD       + Q+E F 
Sbjct: 120 IQLKMNSGMNRLGYTPEKFRAAWERARACQGVGQITLMTHFSDADSERG--VAHQMEAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G   SLA+S+  L  P  HF   RPGI +YG +        +   +Q  +T  
Sbjct: 178 RGAQGIAGA-RSLANSAATLWHPQSHFDWVRPGIIMYGASPSGVSAAIEGTGLQPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG   K      I V A GYADGYP                G  
Sbjct: 237 SELIAVQSVPEGQTVGYGSLFKARAPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+ 
Sbjct: 286 VIVDGVRTRIVGRVSMDMLTVDLTPVPTANVGSRVELWGTSLPIDDVARACGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|90407215|ref|ZP_01215402.1| alanine racemase [Psychromonas sp. CNPT3]
 gi|90311638|gb|EAS39736.1| alanine racemase [Psychromonas sp. CNPT3]
          Length = 357

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 173/367 (47%), Gaps = 20/367 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  I+L AL++N   +   + N++  A++K NAYG G  +IA  L +  +    V    E
Sbjct: 5   RAIINLKALQHNLKVLKKQAPNSKILAIIKANAYGHGMIEIAKNLTD--IHGLGVARFNE 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + LR    +  I +L G    +   ++   +L  VI S  Q+       +        L
Sbjct: 63  ALVLRHAHIKTPIVLLEGFFAKENLPLLVQHDLQTVIHSEEQVQDLISA-TLDKPLTIWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTL 185
           ++D G +RLG    +         + K  +L + +I H  CAD+  + +   Q++ F+  
Sbjct: 122 KLDVGMHRLGFHAHQFKKMYQLLKHSKNVKLPINLICHFNCADELDNPITEKQIQLFKVQ 181

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARI 242
           I    G+  SLASS+  L  P  H  + RPGI+LYG +   +   +   +Q V+T ++R+
Sbjct: 182 IQEDSGL-NSLASSAATLAWPTSHADMIRPGIALYGISPFADKEAEEFSLQPVMTLKSRL 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R+   GE V YG      +D+ + V A+GY DGYP                G    +
Sbjct: 241 IAVREHKKGEAVGYGANWVAPQDTKLGVVAVGYGDGYPRMA-----------PEGTPILV 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G +VP++G+++MDM   D+    + +VGD + ++G  +    V+   GT  Y+L+ ++ 
Sbjct: 290 NGRIVPLVGRVSMDMLTVDLGLDCTDKVGDDVTLWGEGLSATRVSKHMGTVAYELITKLT 349

Query: 363 TRYAKFY 369
            R    Y
Sbjct: 350 ARVELQY 356


>gi|284920994|emb|CBG34059.1| alanine racemase, catabolic [Escherichia coli 042]
          Length = 356

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLDIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLTAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|270290192|ref|ZP_06196418.1| alanine racemase [Pediococcus acidilactici 7_4]
 gi|270281729|gb|EFA27561.1| alanine racemase [Pediococcus acidilactici 7_4]
          Length = 375

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 149/377 (39%), Gaps = 25/377 (6%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL +D  A++ N    +  L   +   AV+K +AYG G   +A     AG   F V
Sbjct: 6   HRASRLVVDAAAIRQNVKKEIERLDPQSELFAVIKADAYGHGLIPVARYTEQAGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR       I VL   +     +  + N+   +  V  LT  +  ++     
Sbjct: 66  AILDEALTLREAGFAEPILVLGITNVKWAALAAEKNVSLTVGDVEWLTKAAPQLTAEHPL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +DTG  R+G    + L+       K        + +H A AD+      ++Q++R
Sbjct: 126 KVHLALDTGMGRIGFQESDGLNQAAELLIKDPRFVFEGVFTHFATADEKDPTYFNLQVDR 185

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F  L+           +++++  L     +  L R G+ +YG       +   + +Q  +
Sbjct: 186 FHKLVDTLPEKPRYVHVSNTATSLWHAACNGNLIRFGVGIYGMNPSGTVLEPPYDLQPAM 245

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+R+   +    G  VSYG      +D  I    IGYADGYP  L G           
Sbjct: 246 TLESRLSFSKLLKKGRSVSYGATYTAEQDEWIGTIPIGYADGYPRCLQGF---------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI----FGPDIKLDDVALASGT 352
                + G+   I+G++ MD  M  +        G  + +     G  I + D+A   GT
Sbjct: 296 --HVLVDGHFCEIVGRVCMDQLMIRLPHEYPA--GTPVILAGQSQGKSISMTDIADYVGT 351

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++      R  + Y
Sbjct: 352 INYEITCGFTERLPRVY 368


>gi|229083529|ref|ZP_04215867.1| Alanine racemase [Bacillus cereus Rock3-44]
 gi|228699783|gb|EEL52430.1| Alanine racemase [Bacillus cereus Rock3-44]
          Length = 389

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 158/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M  + F R   ++++L A+ NN   +  +   N    AVVK N+YG     +A     AG
Sbjct: 1   MGESSFYRDTWVEVNLDAIYNNVTHIKKMIPENVEVFAVVKGNSYGHDYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    ++ 
Sbjct: 61  ATRLAVAFLDEALVLRRSGITAPILVLGPSSPRVVNVAAENDVALTVFQREWVEEALEIW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
              V   + L  D+G  R+G+  +E L  F  +        L  + +H + AD+  +   
Sbjct: 121 DSSVPLRFHLNFDSGMGRIGIREREELKGFLRSLEEAPFFDLEGVYTHFSTADEVGTSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  +G          A+S+  +      F   R GI +YG T  +    
Sbjct: 181 DKQYNTFLKQLSWLQGFGVDPKFIHAANSAATMRFHGITFNAVRIGIVMYGLTPSLEIFP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++    +  I++ + G+ +SYG   +   +  IA   IGYADG+   L G 
Sbjct: 241 FIPIQLEPALSLHTTVSHIKQVIKGDGISYGVTYRTKIEEWIATVPIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       K  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------KVLVDGERVPIVGRVTMDQLMLHLP--YEVPLGTKVTLIGKQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
            ++VA  SGT NY+++  I  R  + +
Sbjct: 347 ANEVAEYSGTINYEIITTISFRVPRIF 373


>gi|327187996|gb|EGE55226.1| putative alanine racemase [Rhizobium etli CNPAF512]
          Length = 386

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/375 (47%), Positives = 239/375 (63%), Gaps = 20/375 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNA---------YGLGCEKIAPALYNAGV 57
           LRL +DLTAL  NW  M   SG AR                  YG+G E    ALY AG 
Sbjct: 18  LRLTVDLTALTENWRDMARRSGAAR---------AAAVVKADAYGMGIEDAGEALYTAGA 68

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           +DFFV +V+EGV LRLY P+ARIFVL GI PG E+  FD +L+PVISS  QL F+  +++
Sbjct: 69  RDFFVATVDEGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPVISSEEQLAFWMAVLA 128

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
               +P AL VDTGFNRLGL + +A+    +          L++SHLAC DDPS  +N  
Sbjct: 129 DYGDYPCALHVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACGDDPSHAMNRQ 188

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           QLE FR + + Y+G+++SLA+S+GI LG +YHF+LTRPGI+LYGG      ++PM+ V T
Sbjct: 189 QLESFRRVTAAYEGVDSSLAASAGIFLGEDYHFELTRPGIALYGGEAVCGMANPMRPVAT 248

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
           AEARII +R   AGE VSYG   +L RDS +A+ + GYADGY  + S         V  G
Sbjct: 249 AEARIIQVRTVKAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQSSGGVPLRQVVPQG 308

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G+GFI G+ VP+ G+ITMD+T+FD+TD     +  GDY+++FG ++ LDDVA A+GT  Y
Sbjct: 309 GQGFIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKNVALDDVARAAGTIGY 368

Query: 356 DLLVRIGTRYAKFYT 370
           ++L  +G R+ + Y 
Sbjct: 369 EILTSMGLRHERRYV 383


>gi|229102703|ref|ZP_04233403.1| Alanine racemase [Bacillus cereus Rock3-28]
 gi|228680711|gb|EEL34888.1| Alanine racemase [Bacillus cereus Rock3-28]
          Length = 408

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 162/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +++DL A+K+N         +      A VK N YG G  ++A A   AGV    V  V+
Sbjct: 28  VEVDLNAVKHNVKEFKKHVNDENIAMMAAVKANGYGHGAVEVAKAGIEAGVNQLAVAFVD 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E ++LR       I +L        +     +++  +  +  L   +++           
Sbjct: 88  EAIELREAGITVPILILGYTSVAAAESAIQYDVMMTVYRIEDLQGINEIAQRLQNKARIQ 147

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG +R+GL  +E   F       +  ++  + +H + AD+      ++Q   F   
Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           ++    +         ++S+G +   N    + R GI +YG        H +   Q  ++
Sbjct: 208 VNTANELGMQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTVVSLQPALS 267

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++++  ++ A     VSYG     T +  IA   IGYADGY   LS             
Sbjct: 268 LKSKVAHVKHATKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G  VP++G++ MD  M D+T ++ ++VGD +  +G      I +++VA   GT 
Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVTKAMPVQVGDDVVFYGKQGEEEIAVEEVADMLGTI 376

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++   +  R  + Y
Sbjct: 377 NYEVTCMLDRRIPRVY 392


>gi|302385985|ref|YP_003821807.1| alanine racemase [Clostridium saccharolyticum WM1]
 gi|302196613|gb|ADL04184.1| alanine racemase [Clostridium saccharolyticum WM1]
          Length = 395

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 170/384 (44%), Gaps = 27/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M     +   +DL A+++N  +M A L    R   VVK + YG G   +A A  +  V  
Sbjct: 1   MKLYSRVYETVDLDAIRHNMEAMKANLKDGTRMIGVVKSDGYGHGAVPVAWA-IDPYVWG 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118
           + V +VEEGV LR +  +  I VL  +      ++ +  +   +  + +    S L    
Sbjct: 60  YAVATVEEGVILRKHGIRKPILVLGVVPYEGYGLLVEHGISSAVFQLKRAERLSSLAVRE 119

Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      L +DTG +R+G  + +EA             ++  + +H A AD+        
Sbjct: 120 GKKAVIHLVLDTGMSRIGYPVTEEAAKEAATICGLPGIEVEGLFTHFAKADERDKKATDH 179

Query: 178 QLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           QLE+++  ++    +GI       ++S+GIL     +    R GIS+YG           
Sbjct: 180 QLEQYQKFVAMLADRGITIPMLHCSNSAGILDLQRANLHAVRAGISIYGIYPSGEVDRDT 239

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  +  ++ I  ++K   G  VSYGG     R+  +A   +GY DGYP  LSG    
Sbjct: 240 VKLRPAMELKSFISYVKKIGPGTSVSYGGTFTADREMTVATVPVGYGDGYPRNLSG---- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345
                   G+  I+G    ILG++ MD  M D+T     E  D + + G     +I ++D
Sbjct: 296 -------KGEVLIRGQRARILGRVCMDQFMVDVTGIHEAEEEDEVVLIGRQGKEEITVED 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A+A G  +Y+++  IG R  + Y
Sbjct: 349 LAMAGGGFHYEIVCDIGKRVPRIY 372


>gi|218549113|ref|YP_002382904.1| alanine racemase [Escherichia fergusonii ATCC 35469]
 gi|218356654|emb|CAQ89280.1| alanine racemase 2, PLP-binding [Escherichia fergusonii ATCC 35469]
 gi|324113955|gb|EGC07929.1| alanine racemase [Escherichia fergusonii B253]
 gi|325497535|gb|EGC95394.1| alanine racemase [Escherichia fergusonii ECD227]
          Length = 356

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 166/367 (45%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL  A    F + +
Sbjct: 3   RPIQASVDLQALKQNLAIVRRAAPDARVWSVVKANAYGHGIERIWNAL--ASTDGFALLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +E+ V LR    +  I +L G     +  ++D   L   + S  QL              
Sbjct: 61  IEDAVTLRERGWKGPILMLEGFFHADDLAVYDKYRLTTSVHSNWQLKALQNAR-LNAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++V++G NRLG   ++                  ++SH A A+ P   V +  LE+  
Sbjct: 120 IYVKVNSGMNRLGFPPEKIPTVWQQLRGMSNVGEMTLMSHFADAEHPEGIVQA--LEKVE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                 +    SLA+S+  L  P  HF   RPGI LYG +   +     +  ++ V+T  
Sbjct: 178 QASEGMEC-RRSLANSAATLWHPQAHFDWVRPGIILYGASPTGHWCDIANTGLKPVMTLS 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   AG+ V YGG+   + +  I + A GYADGYP                G  
Sbjct: 237 SEIIGVQTLKAGDRVGYGGRYTASGEQRIGIVAAGYADGYPRHA-----------PTGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+ 
Sbjct: 286 VLVDGVRTITVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 ALALRVP 352


>gi|315029851|gb|EFT41783.1| alanine racemase [Enterococcus faecalis TX4000]
          Length = 371

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 151/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I   +IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVSIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGSVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|170768101|ref|ZP_02902554.1| alanine racemase [Escherichia albertii TW07627]
 gi|170122867|gb|EDS91798.1| alanine racemase [Escherichia albertii TW07627]
          Length = 356

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 164/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + ++R  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLRALKQNLTIVRQAAPHSRVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQYRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG+S +  L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGVSPERVLTVWQQLRAMTNVGEMTLMSHFAGAEHPDGITDAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                       SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 DQAAEGLAC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II I+    G+ V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGIQTLKVGDQVGYGGRYTAPDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|49086668|gb|AAT51370.1| PA4930 [synthetic construct]
          Length = 359

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 171/370 (46%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  
Sbjct: 2   RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R     ARI +L G     E  +     L  VI    Q   +       +   
Sbjct: 61  LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAA-GLDIPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +     +    +   +ISH ACAD+ +  +   QLE F 
Sbjct: 120 VWLKLDSGMHRLGFDPAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L+      + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A
Sbjct: 180 GLLD-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+   GE V YG      R + I   + GYADGYP            +   G   
Sbjct: 239 QLISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL +
Sbjct: 288 LVGGRRAILAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSK 347

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 348 VTARVPRRYS 357


>gi|157145451|ref|YP_001452770.1| alanine racemase [Citrobacter koseri ATCC BAA-895]
 gi|157082656|gb|ABV12334.1| hypothetical protein CKO_01194 [Citrobacter koseri ATCC BAA-895]
          Length = 356

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 166/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             +   +DL A+K N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPILASLDLQAMKQNLGIVRQAAPDARVWSVVKANAYGHGIERIWTAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G     E  I+D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHADELAIYDTYRLTTCIHSNWQLKVLQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG   +                   ++SH A A+ P     ++     
Sbjct: 119 DVYLKVNSGMNRLGFLPERVQTVWQQLRALPNVGEMTLMSHFADAEHPEGIDQAM----- 173

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
             +    +G+E   SL++S+  L  P  HF   RPGI LYG +         +  ++ V+
Sbjct: 174 TKIAHATEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  ++II ++   AG+ V YGG+   T++  I + A GYADGYP                
Sbjct: 234 TLSSQIIGVQTLKAGDRVGYGGRYTATQEQRIGIVAAGYADGYPRHAPN----------- 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGVRTGTVGTVSMDMLAVDLTPCPQAGIGTSVELWGKEIKIDDVASAAGTVGYE 342

Query: 357 LLVRIGTRYA 366
           L+  +  R  
Sbjct: 343 LMCALAPRVP 352


>gi|15600123|ref|NP_253617.1| biosynthetic alanine racemase [Pseudomonas aeruginosa PAO1]
 gi|20137487|sp|Q9HUN4|ALR1_PSEAE RecName: Full=Alanine racemase, biosynthetic
 gi|9951209|gb|AAG08315.1|AE004906_3 biosynthetic alanine racemase [Pseudomonas aeruginosa PAO1]
          Length = 358

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 171/370 (46%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  
Sbjct: 2   RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R     ARI +L G     E  +     L  VI    Q   +       +   
Sbjct: 61  LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAA-GLDIPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +     +    +   +ISH ACAD+ +  +   QLE F 
Sbjct: 120 VWLKLDSGMHRLGFDPAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L+      + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A
Sbjct: 180 GLLD-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+   GE V YG      R + I   + GYADGYP            +   G   
Sbjct: 239 QLISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL +
Sbjct: 288 LVGGRRAILAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSK 347

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 348 VTARVPRRYS 357


>gi|217965017|ref|YP_002350695.1| alanine racemase [Listeria monocytogenes HCC23]
 gi|254802368|sp|B8DG73|ALR_LISMH RecName: Full=Alanine racemase
 gi|217334287|gb|ACK40081.1| alanine racemase [Listeria monocytogenes HCC23]
 gi|307570423|emb|CAR83602.1| alr [Listeria monocytogenes L99]
          Length = 368

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 155/379 (40%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +     L       +    
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEDL----TLEAP 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G + PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVGGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNAITADDAAQYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|254252040|ref|ZP_04945358.1| Alanine racemase [Burkholderia dolosa AUO158]
 gi|124894649|gb|EAY68529.1| Alanine racemase [Burkholderia dolosa AUO158]
          Length = 356

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++  AVVK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG S ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYSPEKYRAAWERARACPGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
               +  G    LA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAENIAG-TRCLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQSIAKGQSIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAARVP 352


>gi|323964681|gb|EGB60152.1| alanine racemase [Escherichia coli M863]
 gi|327253872|gb|EGE65501.1| alanine racemase [Escherichia coli STEC_7v]
          Length = 356

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQYRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGIAGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYAARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|218553745|ref|YP_002386658.1| alanine racemase [Escherichia coli IAI1]
 gi|218360513|emb|CAQ98069.1| alanine racemase 2, PLP-binding [Escherichia coli IAI1]
          Length = 356

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 164/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    + +I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGQILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGAVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|153209215|ref|ZP_01947281.1| alanine racemase [Coxiella burnetii 'MSU Goat Q177']
 gi|212218349|ref|YP_002305136.1| alanine racemase, biosynthetic [Coxiella burnetii CbuK_Q154]
 gi|226711036|sp|B6J6U2|ALR_COXB1 RecName: Full=Alanine racemase
 gi|120575470|gb|EAX32094.1| alanine racemase [Coxiella burnetii 'MSU Goat Q177']
 gi|212012611|gb|ACJ19991.1| alanine racemase, biosynthetic [Coxiella burnetii CbuK_Q154]
          Length = 364

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 174/370 (47%), Gaps = 25/370 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                I++TALK+N   + AL+  +   A++K N YG G  ++A AL +A    F V  +
Sbjct: 3   RATATINVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVACI 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +E + LR    ++ I V+ G +   E        L  VI    Q++   K  +   S   
Sbjct: 61  DEALTLREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEK-TNLTSSLSV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFR 183
            L++DTG NRLG S++++    +        Q    +++HLA AD+ +     +Q++RF 
Sbjct: 120 WLKIDTGMNRLGFSVEQSPAVYNQLKTSSSIQKPIGLMTHLADADNENKTFTELQIKRFF 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--------KINKSHPMQTV 235
           ++     G   S+ +S+G    PN    L RPGI LYG +         K       + V
Sbjct: 180 SVTEKMIG-PKSIVNSAGFFAYPNALVDLIRPGIILYGISPFGINYNSFKEKIEKKFRPV 238

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A+II I+     + V YG       D  IA+ +IGY DGYP               
Sbjct: 239 MTLSAKIIAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYPRHA-----------P 287

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G + P++G+++MDM   D+    + +VGD + ++G  + ++ +A  +GT  Y
Sbjct: 288 SGTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIAY 347

Query: 356 DLLVRIGTRY 365
           +LL +I  R 
Sbjct: 348 ELLCKITQRV 357


>gi|78185553|ref|YP_377987.1| alanine racemase [Synechococcus sp. CC9902]
 gi|78169847|gb|ABB26944.1| alanine racemase [Synechococcus sp. CC9902]
          Length = 375

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 180/380 (47%), Gaps = 24/380 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           +  +   +++   A+K N  ++   L+      AVVK + YG G   +A A  + G    
Sbjct: 5   NPRQRAWVEVSPAAIKANASALCQHLTPGTELMAVVKADGYGHGAVSVANAALDGGAASL 64

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
            V +++EG++LR    +A I +L  +  P   +   +  L+P +SS+        L    
Sbjct: 65  GVATLQEGLELRRAGLKAPILLLSNLCDPEDLRTCLEWQLMPTLSSLADAKLCHALAEDS 124

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G      L++DTG +RLG +L +  + T    + K  +L  I SHLACADD S+ V   Q
Sbjct: 125 GRRFKVQLKIDTGMSRLGCALDDGAETTQAIQHLKNLELKGIYSHLACADDRSTTVTQQQ 184

Query: 179 LERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPM 232
            +RF+++I        G+   LA+S+G LL PN H+ L R G++LYG      +    P+
Sbjct: 185 RQRFQSVIETLPQRGVGLCRHLANSAGTLLEPNLHYDLVRVGLALYGHAPADHLRDIVPL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           ++ ++  A++ LIR+  AG  VSYG Q        +AV AIGYADG   +LSG       
Sbjct: 245 RSALSVRAKVTLIREIKAGTGVSYGHQYISPNARRLAVVAIGYADGVLRSLSGQID---- 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVAL 348
                     +   +P +G ITMD  + D TD+  +  G  + + G D  ++      + 
Sbjct: 301 -------VLHRDKRLPQVGAITMDQLLIDATDATDLHPGSIVTLLGRDQSVEITPQSWSD 353

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
              +  +++L     R  + 
Sbjct: 354 RCQSIPWEILCGFKHRLPRV 373


>gi|83748582|ref|ZP_00945602.1| Alanine racemase [Ralstonia solanacearum UW551]
 gi|207743279|ref|YP_002259671.1| alanine racemase protein [Ralstonia solanacearum IPO1609]
 gi|83724790|gb|EAP71948.1| Alanine racemase [Ralstonia solanacearum UW551]
 gi|206594676|emb|CAQ61603.1| alanine racemase protein [Ralstonia solanacearum IPO1609]
          Length = 375

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 159/367 (43%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL NN       + ++R  AVVK NAYG G E++   L       F +  
Sbjct: 3   RPIQAVIHGPALANNLQVARRHAPDSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V+LR    Q  + +L G   P    ++    L   +    QL    +L        
Sbjct: 61  LDEAVRLRQLGWQGPVLLLEGFFKPEDLALVEQYRLTTTVHCEEQLRML-ELARLKGPVS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG +RLG +          +         + ++H + AD P       QL  F 
Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G EASL++S+  L  P  H    RPG+ LYG +        +   + + +T +
Sbjct: 178 RATQGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGMAADIEGTGLMSAMTLK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I I+    G  + YG + ++ +   I + A GYADGYP    G    H+P       
Sbjct: 237 SELIAIQDLQPGATIGYGSRFQVEQPMRIGIVACGYADGYPRHAPGWGGNHTP------- 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+ +     VG  + ++G  + +D+VA A+GT  Y+L+ 
Sbjct: 290 VLVDGVRTRMVGRVSMDMITVDLAEVPGARVGTPVTLWGQGLPIDEVAHAAGTVGYELMC 349

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 350 ALALRVP 356


>gi|300704262|ref|YP_003745865.1| alanine racemase 2, plp-binding [Ralstonia solanacearum CFBP2957]
 gi|299071926|emb|CBJ43255.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum CFBP2957]
          Length = 368

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/361 (26%), Positives = 155/361 (42%), Gaps = 18/361 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN       + ++R  AVVK NAYG G E++   L       F +  ++E V+
Sbjct: 2   IHGPALANNLQVARRHAPDSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLDLDEAVR 59

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    Q  + +L G   P    ++    L   I    QL    +L          L+++
Sbjct: 60  LRQLGWQGPVLLLEGFFKPEDLALVEQYRLTTTIHCEEQLRML-ELARLKGPVSVQLKIN 118

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           TG +RLG +          +         + ++H + AD P       QL  F       
Sbjct: 119 TGMSRLGFAPAAYRAAWERARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFEQATQGL 176

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILI 245
            G EASL++S+  L  P  H    RPG+ LYG +        +   +   +T ++ +I I
Sbjct: 177 PG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGVATDIEGTGLMPAMTLKSELIAI 235

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +    G  + YG + ++ +   I + A GYADGYP    G    H+P         + G 
Sbjct: 236 QDLQPGATIGYGSRFQVEQPMRIGIVACGYADGYPRHAPGWGDNHTP-------VLVDGV 288

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
              ++G+++MDM   D+       VG  + ++G  + +D+VA A+GT  Y+L+  +  R 
Sbjct: 289 RTRMVGRVSMDMITVDLAGVPGARVGTPVTLWGQGLPIDEVAHAAGTVGYELMCALALRV 348

Query: 366 A 366
            
Sbjct: 349 P 349


>gi|37526452|ref|NP_929796.1| alanine racemase, catabolic [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785883|emb|CAE14934.1| Alanine racemase, catabolic [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 362

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 158/368 (42%), Gaps = 21/368 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I L AL+NN   +    GN++  AVVK NAYG G   I  +L       F +  
Sbjct: 3   RPISATIHLDALENNLAIIRNKVGNSKIWAVVKANAYGHGLHCIWRSLDQ--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
             E + LR    Q  I +L G   P    II +  L  V+ S  QL       +      
Sbjct: 61  FHEAILLREQGWQGAILLLEGFFKPEDLPIIDEYQLTTVVHSHWQLEAIEAA-NLSKPIN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-SVQLERF 182
             L++++G NRLG    +       +   +      ++SH A AD  +  ++ + QL   
Sbjct: 120 IYLKLNSGMNRLGFPADQYSAVLSLARGIRQIGQITLMSHFANADKDNKEISVTEQLNVI 179

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
            ++      I   LA+S+  L  P  H    RPGI LYG +            ++ V++ 
Sbjct: 180 HSVSQGL-DISQCLANSAASLWYPQTHRDWVRPGIVLYGASPSGKWKDIADIGLKAVMSL 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ II I+   AG+ + YG +        +   A GYADGYP                G 
Sbjct: 239 QSEIIAIQNLKAGDKIGYGSEYTAPGPMRVGTVACGYADGYPRCA-----------MTGT 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    +LG ++MDM   D+T     ++G  ++++G ++ +DDVA +SGT  Y+LL
Sbjct: 288 PIIVDGVRTQVLGTVSMDMLSVDLTPCPQAQIGSPVELWGQNLPVDDVAESSGTIGYELL 347

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 348 CALANRVP 355


>gi|110805189|ref|YP_688709.1| alanine racemase [Shigella flexneri 5 str. 8401]
 gi|110614737|gb|ABF03404.1| alanine racemase 2, catabolic [Shigella flexneri 5 str. 8401]
 gi|332757831|gb|EGJ88158.1| alanine racemase [Shigella flexneri 4343-70]
 gi|333005412|gb|EGK24930.1| alanine racemase [Shigella flexneri K-218]
          Length = 356

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQSDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|317492318|ref|ZP_07950747.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919657|gb|EFV40987.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 356

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 161/367 (43%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +R  IDL+AL +N   +   +  A+  +VVK NAYG G  +I  AL       F +  
Sbjct: 3   RPIRATIDLSALTHNLDQIRQQTPEAKIWSVVKANAYGHGLSRIWRALAK--TDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    Q  I +L G   P   ++I    L   I +  QL    +         
Sbjct: 61  IEEAILLREQGWQGPILLLEGFFQPQDLQLIDRYRLTTTIHNESQLQILGRAR-LSAPVD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V+TG +RLG   ++ +   H++          +++H A A   +       L  F 
Sbjct: 120 IYLKVNTGMHRLGFMPEQLMAIYHSARALPNVDHITLMTHFANA--DNHLGVESPLAAFN 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                       LA+S+  L     H    RPGI LYG +            ++ V++  
Sbjct: 178 AAAVDISA-PRCLANSAATLWHQPTHADWVRPGIVLYGASPTGRWHDIAESHLRPVMSLR 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II I+   +G+ V YG + +  +   I + A GYADGYP                G  
Sbjct: 237 SEIIAIQNIQSGDSVGYGSRYQAVQPQRIGIVACGYADGYPRHA-----------LSGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G    +LG ++MDM   D+T    ++VG+ ++++G ++ +DDVA ++GT  Y+LL 
Sbjct: 286 VWVSGQRTQLLGTVSMDMLAIDLTALPEVQVGESVELWGQNLPVDDVAQSAGTIGYELLC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|33866630|ref|NP_898189.1| alanine racemase [Synechococcus sp. WH 8102]
 gi|33633408|emb|CAE08613.1| putative alanine racemase [Synechococcus sp. WH 8102]
          Length = 376

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 175/379 (46%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   +++  TA++ N   +   L    +  AVVK + YG G   +A A    G     V
Sbjct: 7   RQRAWVEVYPTAIEANCRLLCRQLVTGCQLMAVVKADGYGHGAVTVARASLRGGASSLGV 66

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQ--LTFYSKLMSCG 119
            +++EG++LR    +A + +L  +  P   +   +  L+P +SS+ +             
Sbjct: 67  ATLQEGLELRDAGIEAPVLILSALPSPEDLRHCLEQRLMPTLSSLDEANTAAAVAAERGN 126

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              P  L++DTG  RLG   QE      +       +L  + SHLACAD+    +  +QL
Sbjct: 127 ERFPVQLKLDTGMARLGGEWQEGAQLVQSIRTLPQLELVGLYSHLACADELGDQLTHLQL 186

Query: 180 ERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233
           +RFR++I        G+   LA+S+G L  P  H  + R G++LYG +    +     +Q
Sbjct: 187 QRFRSVIEALPDGGSGLCCHLANSAGTLQDPRLHLDMVRVGLALYGQSPADHLGLDLALQ 246

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +  +AR+ LIR+  +G  VSYG +   +R S +AV AIGYADG    LSG        
Sbjct: 247 PALAVKARVSLIREVPSGSGVSYGHRFVTSRPSRLAVIAIGYADGVVRALSGRID----- 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                    +G  VP +G ITMD  + D TD   + VGD + + G D    I+  D +  
Sbjct: 302 ------VLHRGRRVPQVGNITMDQIILDATDVEELTVGDNVTLLGQDGDDCIRPQDWSAR 355

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            G+  +++L     R  + 
Sbjct: 356 CGSIPWEILCGFKHRLPRV 374


>gi|116053079|ref|YP_793398.1| biosynthetic alanine racemase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588300|gb|ABJ14315.1| biosynthetic alanine racemase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 358

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 171/370 (46%), Gaps = 18/370 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  
Sbjct: 2   RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R     ARI +L G     E  +     L  VI    Q   +       +   
Sbjct: 61  LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAA-GLDIPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +     N    +   +ISH ACAD+ +  +   QLE F 
Sbjct: 120 VWLKLDSGMHRLGFDPVALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L+      + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A
Sbjct: 180 GLLD-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+   GE V YG      R + I   + GYADGYP            +   G   
Sbjct: 239 QLISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL +
Sbjct: 288 LVGGRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSK 347

Query: 361 IGTRYAKFYT 370
           +  R  + Y+
Sbjct: 348 VTARVPRRYS 357


>gi|306824745|ref|ZP_07458089.1| alanine racemase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432956|gb|EFM35928.1| alanine racemase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 367

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 157/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M +   N     AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIRLGAIRQNIQQMGSHIPNGTLKFAVVKANAYGHGAVAVATAIQDI-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I +L         +  + ++   ++ +  +       +     
Sbjct: 65  SNIDEAIELRQAGINKKILILGVSELEAVSLAKEYDITLTVAGLEWIQALLDKEADLTDL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       D   +   +   ++  I +H A AD+ S    + QLE F
Sbjct: 125 TVHLKIDSGMGRIGFRDASEADLVQDLLKQHGARVEGIFTHFATADEESDTYFNQQLECF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + +++  K +      ++S+  L      F   R G S+YG       +N  + +   +T
Sbjct: 185 KAILASMKEVPELVHASNSATTLWHAETIFNAVRMGDSMYGLNPSGEVLNLPYDLTPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKIYPL--GTKVTLIGSNGDQEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|256032536|pdb|3E5P|A Chain A, Crystal Structure Of Alanine Racemase From E.Faecalis
 gi|256032537|pdb|3E5P|B Chain B, Crystal Structure Of Alanine Racemase From E.Faecalis
 gi|256032538|pdb|3E5P|C Chain C, Crystal Structure Of Alanine Racemase From E.Faecalis
 gi|256032547|pdb|3E6E|A Chain A, Crystal Structure Of Alanine Racemase From E.Faecalis
           Complex With Cycloserine
 gi|256032548|pdb|3E6E|B Chain B, Crystal Structure Of Alanine Racemase From E.Faecalis
           Complex With Cycloserine
 gi|256032549|pdb|3E6E|C Chain C, Crystal Structure Of Alanine Racemase From E.Faecalis
           Complex With Cycloserine
          Length = 371

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 150/379 (39%), Gaps = 27/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL ID  A+  N       L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120
             ++E ++LR    Q  I +L  +      ++   +L   +++   L    + +      
Sbjct: 66  ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L+VDTG  R+G  + +E         + K      I +H + AD+  +     Q 
Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185

Query: 180 ERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
            RF+ +++  + +     +++S+  L  P+    + R G+++YG     NK  P    + 
Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +I +++  AGE + YG       +  I    IGYADG+   L G         
Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G++ MD  M  + +   + VG  + + G D      L  VA   
Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGPVVTLVGKDGNEENTLQMVAEKL 351

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++      R  + Y
Sbjct: 352 ETIHYEVACTFSQRIPREY 370


>gi|118588136|ref|ZP_01545546.1| alanine racemase [Stappia aggregata IAM 12614]
 gi|118439758|gb|EAV46389.1| alanine racemase [Stappia aggregata IAM 12614]
          Length = 380

 Score =  373 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/367 (37%), Positives = 203/367 (55%), Gaps = 10/367 (2%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL IDL A+ +NW  +   + G    AAV+K +AYG G +K A ALY AG + FFV    
Sbjct: 17  RLTIDLDAIVSNWSLLKDKVGGGTDCAAVLKADAYGTGQDKTAAALYQAGCRTFFVAVPT 76

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           E + LR   P A I+VL G+ PG  +     ++ PV+ S+ +L  +S++      S P A
Sbjct: 77  EALTLRASLPDAVIYVLDGLFPGTAEHFLKHDIRPVLGSLEELVEWSEICRGASKSFPAA 136

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + V+TG +RLGL+ +E      ++      Q SL++SHLAC  +P   +N  QL+ F   
Sbjct: 137 VHVNTGIHRLGLTPEEFTQALSDTAALGPFQPSLVMSHLACGSNPDHPMNRRQLKLFTET 196

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            + +  I  SLA+S+G+LLGP YHF + RPGI+LYGG     + +PM+ V   EARI+++
Sbjct: 197 TAPFPLIPRSLANSAGVLLGPEYHFDVVRPGIALYGGLAIETEPNPMKPVAKVEARIMMV 256

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ + YG ++  TR    AV A GYADG        D         GG G I GY
Sbjct: 257 RDVPKGDTIGYGAKQTATRPLRNAVVAAGYADGMIRRAGSTDER------PGGFGTIGGY 310

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             PILG+I+MDM   D+TD     +  G ++++ GP +   D+A  + T +Y+ L  +G 
Sbjct: 311 KAPILGRISMDMITLDVTDVPDHLLRRGAFVEMLGPGVAASDLAAYAETIDYEYLTSLGR 370

Query: 364 RYAKFYT 370
           R+ + Y 
Sbjct: 371 RFERVYA 377


>gi|323953960|gb|EGB49759.1| alanine racemase [Escherichia coli H263]
          Length = 356

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 161/368 (43%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  A+   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|167586833|ref|ZP_02379221.1| alanine racemase [Burkholderia ubonensis Bu]
          Length = 356

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++  AVVK NAYG G  +  P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRYAGQSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + AD       + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYTPEKYRAAWERARACHGIGQITLMTHFSDADSERG--VAEQLAAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
               H  G   SLA+S+ +L  P  HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAEHIAGA-RSLANSAAVLWHPGTHFDWVRPGIMLYGASPSGRFADIADTGLKPTMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIAKGQSIGYGSTFSAQAQMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G ++ +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVGSRVELWGNELPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAARVP 352


>gi|92114747|ref|YP_574675.1| alanine racemase [Chromohalobacter salexigens DSM 3043]
 gi|122419409|sp|Q1QU82|ALR_CHRSD RecName: Full=Alanine racemase
 gi|91797837|gb|ABE59976.1| alanine racemase [Chromohalobacter salexigens DSM 3043]
          Length = 364

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/371 (27%), Positives = 159/371 (42%), Gaps = 19/371 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  L   IDL AL+ N+      + ++R  AVVK +AYG G    A AL +     F V 
Sbjct: 2   SRPLIADIDLDALRRNYCLARDQAPHSRAIAVVKADAYGHGAVACADALRDL-APAFAVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + LR       I +L G     E  + D   L   + S  Q+             
Sbjct: 61  CLEEALTLREAGITQPIVLLEGFFDAAELSLIDAHRLWTAVHSDWQIDALLAYRPR-QPI 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
           P  L++D+G +RLG + +             +      +++H A AD   +     Q+  
Sbjct: 120 PTWLKLDSGMHRLGFAPEAFEARWQRLAAATEHVTDLHLMTHFATADALDAAYFRRQMAC 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
             +L    +     LA+S   L  P  H    RPG+ LYG        + S  ++ V+T 
Sbjct: 180 IASLRQRLEA-PVCLANSPATLAWPEAHGDWNRPGVMLYGSDPLEGANDASRALEPVMTL 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II +R+   GE V YGG+ + +R S I V A GY DGY                 G 
Sbjct: 239 RSEIIAVRELAEGEAVGYGGRWRASRPSRIGVVAGGYGDGYDRHA-----------RDGT 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              ++G  VP+ GK++MDM   D+T+     +G  + ++G  + +D+VA    T +Y L+
Sbjct: 288 PVLVEGQRVPLAGKVSMDMLTVDLTELPEAGIGSPVVLWGEGLPIDEVARHCDTISYTLM 347

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 348 TGVLPRVPRRY 358


>gi|71899103|ref|ZP_00681267.1| Alanine racemase [Xylella fastidiosa Ann-1]
 gi|71731097|gb|EAO33164.1| Alanine racemase [Xylella fastidiosa Ann-1]
          Length = 369

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 175/370 (47%), Gaps = 21/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                 IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  
Sbjct: 9   RPAHAVIDLDALRHNYRFARRLGGG-KALAVVKADAYGHGAVRCAQAL-EAEVDGFAVAC 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    QA I +L G    +E ++I   NL  VI+S  Q+   +          
Sbjct: 67  IEEALELRQVGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAF-HSPSPIG 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGL  +E  D   +  +       ++++HLA AD+  +   + Q   F 
Sbjct: 126 VWLKLDSGMHRLGLEPKEFRDAWMSLHSLPQVGEVVLMTHLARADELDNPRTNEQASVFA 185

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
                     AS+ +SSG+L     +    RPG+ LYG      +S     P++ V+   
Sbjct: 186 HASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVY 244

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R+  AGE V YG      R + + V A+GYADGYP                G  
Sbjct: 245 SKLIAVRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTP 293

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL 
Sbjct: 294 LLVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLC 353

Query: 360 RIGTRYAKFY 369
            +  R  ++Y
Sbjct: 354 GL-KRVRRYY 362


>gi|301017210|ref|ZP_07181991.1| alanine racemase [Escherichia coli MS 69-1]
 gi|300400341|gb|EFJ83879.1| alanine racemase [Escherichia coli MS 69-1]
          Length = 356

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 161/368 (43%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMT--RI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L     HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHSEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|165975710|ref|YP_001651303.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303251626|ref|ZP_07337799.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303252778|ref|ZP_07338938.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247237|ref|ZP_07529287.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307251781|ref|ZP_07533684.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307260709|ref|ZP_07542399.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307262841|ref|ZP_07544466.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|165875811|gb|ABY68859.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302648339|gb|EFL78535.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302649468|gb|EFL79651.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306856295|gb|EFM88448.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306860782|gb|EFM92792.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306869630|gb|EFN01417.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306871856|gb|EFN03575.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 374

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/380 (25%), Positives = 166/380 (43%), Gaps = 31/380 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  
Sbjct: 2   KPATATISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLT------------- 110
           + E ++++      +I ++ G    +E +         VI    QL              
Sbjct: 61  LREALEIQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAKEWQQEQ 120

Query: 111 ---FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
              F+ +           L++DTG +RLG+  ++   F        L +    +SH + A
Sbjct: 121 QKGFWKRKAKIYFPINVWLKIDTGMHRLGVHPEKVDMFYQRLKACPLVESISFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225
           D+P       Q+  F    S Y   E S+++SSGIL     H+   RPGI ++G +    
Sbjct: 181 DEPDCGYTEKQIAVFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP     
Sbjct: 241 PITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYPR---- 296

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                  +   G    + G +VPI+G+++MDM   D+      +VGD +  +G D+ +++
Sbjct: 297 -------NAPEGTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEE 349

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA   G  +Y+L+ ++  R 
Sbjct: 350 VAQHIGVISYELITKLTPRV 369


>gi|91210403|ref|YP_540389.1| alanine racemase [Escherichia coli UTI89]
 gi|117623404|ref|YP_852317.1| alanine racemase [Escherichia coli APEC O1]
 gi|218558114|ref|YP_002391027.1| alanine racemase [Escherichia coli S88]
 gi|237705146|ref|ZP_04535627.1| alanine racemase 2 [Escherichia sp. 3_2_53FAA]
 gi|91071977|gb|ABE06858.1| alanine racemase 2, catabolic [Escherichia coli UTI89]
 gi|115512528|gb|ABJ00603.1| alanine racemase 2, catabolic [Escherichia coli APEC O1]
 gi|218364883|emb|CAR02579.1| alanine racemase 2, PLP-binding [Escherichia coli S88]
 gi|222032985|emb|CAP75725.1| lanine racemase, catabolic [Escherichia coli LF82]
 gi|226899903|gb|EEH86162.1| alanine racemase 2 [Escherichia sp. 3_2_53FAA]
 gi|294490907|gb|ADE89663.1| alanine racemase [Escherichia coli IHE3034]
 gi|307627292|gb|ADN71596.1| alanine racemase [Escherichia coli UM146]
 gi|312945816|gb|ADR26643.1| alanine racemase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315288597|gb|EFU47995.1| alanine racemase [Escherichia coli MS 110-3]
 gi|323949699|gb|EGB45585.1| alanine racemase [Escherichia coli H252]
          Length = 356

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 161/368 (43%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  A+   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|152974082|ref|YP_001373599.1| alanine racemase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022834|gb|ABS20604.1| alanine racemase [Bacillus cytotoxicus NVH 391-98]
          Length = 389

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +  L   +    AVVK NAYG G   +A     AG
Sbjct: 1   MEELSFYRDTWVEVDLDAIYNNVTRIKELIRDDVEIFAVVKGNAYGHGYVPVAKTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALILRRAGITAPILVLGPSAPRDVNVAAEHDVTLTVFQKEWVEEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           +  VS  + L  D+G  R+G+  + E   F  +  N    +   + +H A AD+  +   
Sbjct: 121 NSPVSMKFHLNFDSGMGRIGIRERGELEGFLRSLENAPFLEFEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  + +         A+S+  L      F   R GI++YG T  I    
Sbjct: 181 DKQYNTFLEQLSWLEKLGVSPRLVHAANSAATLRFHGITFNAVRIGIAMYGVTPSIEISP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++  + +  I++ + G+ VSYG   +   +  IA   IGYADG+   L G 
Sbjct: 241 FLPIQLEAALSLHSTVAHIKQVMKGDGVSYGVTYQTRTEEWIATIPIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       K  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------KVLVNGKRVPIVGRVTMDQLMLRLP--YKVSLGTKVTLIGKQGSEYIH 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  + T NY+++     R  + +
Sbjct: 347 AAEVAEYTSTINYEIITTTSFRVPRIF 373


>gi|229542538|ref|ZP_04431598.1| alanine racemase [Bacillus coagulans 36D1]
 gi|229326958|gb|EEN92633.1| alanine racemase [Bacillus coagulans 36D1]
          Length = 383

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/381 (24%), Positives = 161/381 (42%), Gaps = 27/381 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M       +++DL A+  N  +M  L   + +  AVVK NAYG G E +A     +G   
Sbjct: 1   MAFYRDTWVEVDLDAISENVGNMRQLLPEHTQIIAVVKANAYGHGAEYVAKTALASGASA 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR     A I VL    P    +  + N+   +     L    + +  G
Sbjct: 61  LAVAFLDEALALRKKGITAPILVLGAARPEDAGVAAEENISLTVFQKDWLEEAGRYL-TG 119

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+ DTG  R+G+ +LQE  +       +       I +H A AD+  + +   Q
Sbjct: 120 RKLSVHLKCDTGMGRIGVRTLQELKEVEKIVNQQSCFYFEGIFTHFATADEIDTTLYEKQ 179

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232
             +F+ ++ + +        A+S+  L      F   R GI++YG +           P+
Sbjct: 180 YSQFQDMVLNLEHRPPYVHCANSAAALRFDQSPFNAVRFGIAMYGLSPSPAIKPVLPFPL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +   +   ++  +++  AG+ VSYG   + + D  IA   IGYADG+   LSG       
Sbjct: 240 KEAFSLHTKVTHVKQIHAGDTVSYGATYQASGDEWIATLPIGYADGWIRRLSGQ------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I G   PI+G+I MD  M  +  +  + VG    + G      I +D++A 
Sbjct: 294 ------EVIIDGERAPIVGRICMDQCMVKL--ARPVAVGTKATLIGKQGDLSIPVDEIAE 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY++   I +R  + +
Sbjct: 346 KLETINYEVTCSISSRVPRIF 366


>gi|42526605|ref|NP_971703.1| alanine racemase [Treponema denticola ATCC 35405]
 gi|81831436|sp|Q73NQ7|ALR_TREDE RecName: Full=Alanine racemase
 gi|41816798|gb|AAS11584.1| alanine racemase [Treponema denticola ATCC 35405]
          Length = 379

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 160/384 (41%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              +  I L  L+ N   +   L+ N +    VK +AYG G  ++A A   AGV    V 
Sbjct: 2   RATKAIIHLDNLQYNIKEIKKRLNKNVKICLPVKADAYGHGAVRVAVAAIRAGVSYLAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           S++E V+LR     A I  L      +   +   ++ P++     +   ++         
Sbjct: 62  SIQEAVELREAGIVAPIISLSLPVLEEIPELLKYDIEPLVIDEEFINDLNRFAKKLNKKA 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS---HVNSVQL 179
              L++DTG  R+G S  EA+         +  +L  + +H A +D            Q+
Sbjct: 122 WVHLKIDTGMRRIGCSPMEAVKLAVQIDRAENLELKGVCTHFAVSDSTDEKNIKFTKKQI 181

Query: 180 ERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPM 232
             F+  I   K  GI       A+S  +L  P   F + RPGI +YG   +  +N    +
Sbjct: 182 SVFKDSIKEIKKAGINPGLIHAANSGSVLQYPEAQFDMVRPGILVYGYAPSPSLNSLIDL 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+    +++LI+K      VSY       +++ +A   IGYADG   +LSGL      
Sbjct: 242 KPVMELVTQVVLIKKIEKDTSVSYDRCWTAEKETFVATLPIGYADGLMRSLSGLKVRIGK 301

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-------DIKLDD 345
             F            PI+G+I MD  M DI  S  ++  D + IFGP       +    D
Sbjct: 302 DFF------------PIIGRICMDQCMIDIGASPWVQRWDEVCIFGPVSKEHPKNNTAQD 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  +GT  Y+L   I  R  + +
Sbjct: 350 LAKIAGTIPYELTCDINKRVPRIF 373


>gi|293365913|ref|ZP_06612616.1| alanine racemase [Streptococcus oralis ATCC 35037]
 gi|307702317|ref|ZP_07639275.1| alanine racemase [Streptococcus oralis ATCC 35037]
 gi|291315591|gb|EFE56041.1| alanine racemase [Streptococcus oralis ATCC 35037]
 gi|307624120|gb|EFO03099.1| alanine racemase [Streptococcus oralis ATCC 35037]
          Length = 367

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 158/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPERTLKWAVVKANAYGHGAVAVAMAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I +L         +  + ++   ++ +  +       +     
Sbjct: 65  SNIDEAIELRQAGLSKKILILGVSEIEAIDLAKEYDITLTVAGLEWIQALLARETDLSGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +       +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFRDSSEAEQAQALLQQYGARVEGIFTHFATADEESDDYFNQQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + ++  +T
Sbjct: 185 KTILASMKEVPDLVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + +     G +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKIYPL--GTKVTLIGTNGGKEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|327394099|dbj|BAK11521.1| alanine racemase, catabolic DadB [Pantoea ananatis AJ13355]
          Length = 356

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 168/370 (45%), Gaps = 26/370 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   ID  AL++N   +   +  +R  +VVK NAYG G  ++  +L       F + 
Sbjct: 2   SRPIVATIDQQALRHNLAIVRRAAPTSRVWSVVKANAYGHGIARVWESLSA--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G     +  + D   L   + S  Q      L +  +S 
Sbjct: 60  NMEEAILLREQGWKKPILLLEGFFHPDDLALIDRYRLTTSVHSNWQ---IHALANATLSA 116

Query: 123 PYAL--QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           P  L  ++++G NRLG   ++     H     +      +++H A A++P   V    L+
Sbjct: 117 PVDLYLKINSGMNRLGFRPEQVNGIWHKLRALENVGDITLMAHFADAENPDGIV--EPLK 174

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R             SL++S+  L  P  H+   RPGI LYG +   N     S  ++ V+
Sbjct: 175 RIAQATEGLDS-PVSLSNSACTLWHPEAHYDWVRPGIILYGASPSGNWQDIASSGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II +++  AG+ V YG +   T+   I V A GYADGYP                
Sbjct: 234 TLSSEIIGVQQLQAGDGVGYGYRYHATQPQRIGVVACGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G M  ++G ++MDM   D+T      +G  ++++G ++K+D VA A+GT  Y+
Sbjct: 283 GTPVAVDGIMTQVVGAVSMDMITVDLTPCPQAGIGSSVELWGENVKIDQVAKAAGTVGYE 342

Query: 357 LLVRIGTRYA 366
           L+  +  R  
Sbjct: 343 LMCALAPRVP 352


>gi|258588448|pdb|3HA1|A Chain A, Alanine Racemase From Bacillus Anthracis (Ames)
 gi|258588449|pdb|3HA1|B Chain B, Alanine Racemase From Bacillus Anthracis (Ames)
          Length = 397

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVV  NAYG     +A     AG
Sbjct: 1   MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVXGNAYGHDYVPVAKIALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +    KL 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  ++ L  F  +       +L  + +H A AD+  +   
Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  L      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++   ++  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373


>gi|134296048|ref|YP_001119783.1| alanine racemase [Burkholderia vietnamiensis G4]
 gi|134139205|gb|ABO54948.1| alanine racemase [Burkholderia vietnamiensis G4]
          Length = 356

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++  AVVK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG   ++       +          +++H + AD       + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYQPEKYRAAWERARACPAIGQITLMTHFSDADTERG--VAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
               +  G   SLA+S+ +L  P+ HF   RPGI LYG +            +Q  +T  
Sbjct: 178 RGAENIAGA-RSLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSADIADTGLQPTMTLT 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIAKGQAIGYGSTFSAPARMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGVRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNTLPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|87122505|ref|ZP_01078385.1| biosynthetic alanine racemase [Marinomonas sp. MED121]
 gi|86162298|gb|EAQ63583.1| biosynthetic alanine racemase [Marinomonas sp. MED121]
          Length = 359

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 18/369 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   IDL A+K+N+     L  N +  AVVK NAYG G  ++A  L +  V  F V +
Sbjct: 3   RPLTAHIDLAAIKHNYLLAKKLQPNTKAFAVVKANAYGHGAVEVAKYLDDI-VDAFAVAA 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     + I +L G+    + ++  + N    I +  QLT +  + +      
Sbjct: 62  IEEAIELREAGVSSPILLLEGVFESAEWQVCENHNFWVAIENQTQLTDF--IAANIQIDK 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG+    A  F     +       ++++H + ADD  S   S QL  F 
Sbjct: 120 VFLKLDSGMHRLGVQPSSADKFIELLEHNPNVGEVVLMTHFSSADDLDSPATSEQLAVFD 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
            +   +  ++ S+A+S+  L          RPGI LYG +       +   ++  +T  +
Sbjct: 180 QVHRQFSQLDVSVANSAATLKWQLPEGGWIRPGIMLYGISPFDEISAQELGLKPAMTLTS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+   GE V Y           IA  A+GY DGYP   +                
Sbjct: 240 KIISLREVKDGEAVGYARAYVAKGQRQIATVAVGYGDGYPRMAN-----------HQTPV 288

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            ++  M  + G+++MDM   D+T+    +VGD + ++G    ++DVA  S T  Y+L+ R
Sbjct: 289 LVEQAMCCLSGRVSMDMITLDVTELGETQVGDEVILWGEKNPVEDVAAHSSTIAYELVTR 348

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 349 MTGRAKRQY 357


>gi|311068669|ref|YP_003973592.1| alanine racemase [Bacillus atrophaeus 1942]
 gi|310869186|gb|ADP32661.1| alanine racemase [Bacillus atrophaeus 1942]
          Length = 393

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/384 (25%), Positives = 172/384 (44%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + ++++L A+K N  ++       ++  AVVK NAYG G  ++A      G  +  V 
Sbjct: 6   REVWIEVNLDAIKKNLRAIRHHIPKKSKIMAVVKANAYGHGSVEVARHALENGASELAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM---SCGV 120
           SVEEG+ LR     A I VL        K     N+      V  +   ++++   +   
Sbjct: 66  SVEEGIVLRKAGITAPILVLGFTSLSCVKESAAWNIELSAFQVDWIKEANEILKNEARPN 125

Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+   +E L   +     K  + + I +H + AD+P + +  +Q 
Sbjct: 126 RLGIHINVDTGMGRLGVRTKEELLAVVNALTASKFLRWAGIFTHFSTADEPDTTLTKLQH 185

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230
           ++F   +   K  GIE     +++++  +  P +   + R GI LYG             
Sbjct: 186 DKFIRFLRFLKNQGIELPTVHMSNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLHLV 245

Query: 231 PMQTVVTAEARIILIRKAL-AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            ++  ++ +ARI  ++        +SYG       D +IA   +GYADGY   LS     
Sbjct: 246 KLEPALSLKARIAYVKTMRTEPRTISYGATYIAEPDEVIATLPVGYADGYSRALSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  VP++G++TMD+ M  + +S   + G+ + I+G     +I +D+
Sbjct: 303 --------GFVLHRGRRVPVVGRVTMDLIMVSLGESEG-KQGEEVVIYGQQKGAEISVDE 353

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           VA    T NY+++  +  R  +FY
Sbjct: 354 VAEMLNTINYEVVSTLSRRIPRFY 377


>gi|325981463|ref|YP_004293865.1| alanine racemase [Nitrosomonas sp. AL212]
 gi|325530982|gb|ADZ25703.1| alanine racemase [Nitrosomonas sp. AL212]
          Length = 360

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 174/371 (46%), Gaps = 21/371 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  ++  ID +AL +N   +   + +AR  AV+K NAYG G    A AL N  V  F + 
Sbjct: 2   SRPIQAIIDHSALTHNLTIVRQYAPSARILAVLKANAYGHGLLHTANALKN--VDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++  + LR    +  I +L G     +  +I    L  VI    Q++  S   +  +  
Sbjct: 60  ELDAAITLRTAGYKQPILLLEGFFSTKEIALIEQYQLSAVIHHTEQVSMLSDFKNHKMD- 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-SVQLER 181
              ++V+TG NRLGLS ++         N +  +   +++H A ADDPS   +   QL+ 
Sbjct: 119 -IFIKVNTGMNRLGLSPKQLPQVIKELTNDQHVKNITLMTHFASADDPSEKASVLRQLQC 177

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTA 238
           F T+   Y     SLA+S+ I+  P  H    RPGI LYG +   +K      +  V+T 
Sbjct: 178 FETITETY-NYPCSLANSAAIVNYPETHSDWVRPGIMLYGASPFPDKTAADLNLLPVMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ++II +     G+ V Y G         I + A GYADGYP                G 
Sbjct: 237 SSKIIAMHDLEPGDKVGYHGLFTADDRIRIGIVACGYADGYPRHA-----------PTGT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I      +LG+I+MDM   D+T+  + ++GD + ++G  + ++++A  +GT++Y LL
Sbjct: 286 PILINNQRSRLLGRISMDMLAIDLTEVENTKLGDPVVLWGKGMPVEEIAGYAGTSSYQLL 345

Query: 359 VRIGTRYAKFY 369
             +  R  + +
Sbjct: 346 CGLSARVDRKF 356


>gi|312866452|ref|ZP_07726670.1| alanine racemase [Streptococcus downei F0415]
 gi|311098146|gb|EFQ56372.1| alanine racemase [Streptococcus downei F0415]
          Length = 367

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 164/377 (43%), Gaps = 27/377 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     K+DL+A+ +N   +      + +T AVVK NAYG G   +A       V  F V
Sbjct: 6   HRPTLAKVDLSAISSNIKQIQDHVPQSVKTFAVVKANAYGHGAVAVASHTQRL-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++EG++LR    +  I VL  + PG+  ++ D  L   I+S+  L           + 
Sbjct: 65  SNIDEGIELRQAGIRKPILVLGVVLPGEVPLVRDYRLTLTIASLEWLELAQAKPLDLSNL 124

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + VD+G  R+G+ SL EA D       +   Q+  I +H A AD+        QL  
Sbjct: 125 LVHIAVDSGMGRIGVRSLAEANDLI-AGLRQAGCQVKGIFTHFATADEADDRKFQEQLAF 183

Query: 182 FRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236
           F+ L++           ++S+  L      F   R G+ +YG      +    + ++  +
Sbjct: 184 FKELVAGLDYCPELVHASNSATSLWHSEGIFNALRLGLVIYGLNPSGQELSLPYKIKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E  ++ ++K  AG  V YG     +++  I    +GYADG+   + G D         
Sbjct: 244 SLETALVHVKKVPAGADVGYGATYTSSQEEWIGTLPLGYADGWTRDMQGFD--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G   PI+G+++MD     +  S  +  G  + + G +    I   DVA   GT
Sbjct: 295 ---VLVAGQRCPIVGRVSMDQITIRLPQSYPL--GTKVTLIGKNGDQLISATDVAQQRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++L  +  R  + Y
Sbjct: 350 INYEVLCLLSDRVPREY 366


>gi|15610559|ref|NP_217940.1| alanine racemase [Mycobacterium tuberculosis H37Rv]
 gi|15843019|ref|NP_338056.1| alanine racemase [Mycobacterium tuberculosis CDC1551]
 gi|31794604|ref|NP_857097.1| alanine racemase [Mycobacterium bovis AF2122/97]
 gi|121639348|ref|YP_979572.1| alanine racemase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663287|ref|YP_001284810.1| alanine racemase [Mycobacterium tuberculosis H37Ra]
 gi|148824630|ref|YP_001289384.1| alanine racemase [Mycobacterium tuberculosis F11]
 gi|167968690|ref|ZP_02550967.1| alanine racemase [Mycobacterium tuberculosis H37Ra]
 gi|215405459|ref|ZP_03417640.1| alanine racemase [Mycobacterium tuberculosis 02_1987]
 gi|215413331|ref|ZP_03422016.1| alanine racemase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428925|ref|ZP_03426844.1| alanine racemase [Mycobacterium tuberculosis T92]
 gi|215432390|ref|ZP_03430309.1| alanine racemase [Mycobacterium tuberculosis EAS054]
 gi|215447752|ref|ZP_03434504.1| alanine racemase [Mycobacterium tuberculosis T85]
 gi|218755205|ref|ZP_03534001.1| alanine racemase [Mycobacterium tuberculosis GM 1503]
 gi|219559485|ref|ZP_03538561.1| alanine racemase [Mycobacterium tuberculosis T17]
 gi|224991844|ref|YP_002646533.1| putative alanine racemase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800470|ref|YP_003033471.1| alanine racemase alr [Mycobacterium tuberculosis KZN 1435]
 gi|254234024|ref|ZP_04927349.1| alanine racemase alr [Mycobacterium tuberculosis C]
 gi|254366033|ref|ZP_04982078.1| alanine racemase alr [Mycobacterium tuberculosis str. Haarlem]
 gi|260188477|ref|ZP_05765951.1| alanine racemase [Mycobacterium tuberculosis CPHL_A]
 gi|260202499|ref|ZP_05769990.1| alanine racemase [Mycobacterium tuberculosis T46]
 gi|260206790|ref|ZP_05774281.1| alanine racemase [Mycobacterium tuberculosis K85]
 gi|289444919|ref|ZP_06434663.1| alanine racemase [Mycobacterium tuberculosis T46]
 gi|289449122|ref|ZP_06438866.1| alanine racemase alr [Mycobacterium tuberculosis CPHL_A]
 gi|289555698|ref|ZP_06444908.1| alanine racemase alr [Mycobacterium tuberculosis KZN 605]
 gi|289571648|ref|ZP_06451875.1| alanine racemase alr [Mycobacterium tuberculosis T17]
 gi|289576156|ref|ZP_06456383.1| alanine racemase alr [Mycobacterium tuberculosis K85]
 gi|289747252|ref|ZP_06506630.1| alanine racemase alr [Mycobacterium tuberculosis 02_1987]
 gi|289752142|ref|ZP_06511520.1| alanine racemase alr [Mycobacterium tuberculosis T92]
 gi|289755553|ref|ZP_06514931.1| alanine racemase [Mycobacterium tuberculosis EAS054]
 gi|289759583|ref|ZP_06518961.1| alanine racemase alr [Mycobacterium tuberculosis T85]
 gi|289763606|ref|ZP_06522984.1| alanine racemase alr [Mycobacterium tuberculosis GM 1503]
 gi|294995803|ref|ZP_06801494.1| alanine racemase [Mycobacterium tuberculosis 210]
 gi|297636085|ref|ZP_06953865.1| alanine racemase [Mycobacterium tuberculosis KZN 4207]
 gi|297733085|ref|ZP_06962203.1| alanine racemase [Mycobacterium tuberculosis KZN R506]
 gi|298526906|ref|ZP_07014315.1| D-alanine racemase [Mycobacterium tuberculosis 94_M4241A]
 gi|313660416|ref|ZP_07817296.1| alanine racemase [Mycobacterium tuberculosis KZN V2475]
 gi|1449364|emb|CAB01033.1| ALANINE RACEMASE ALR [Mycobacterium tuberculosis H37Rv]
 gi|13883361|gb|AAK47870.1| D-alanine racemase [Mycobacterium tuberculosis CDC1551]
 gi|31620201|emb|CAD95644.1| PROBABLE ALANINE RACEMASE ALR [Mycobacterium bovis AF2122/97]
 gi|121494996|emb|CAL73482.1| Probable alanine racemase alr [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124599553|gb|EAY58657.1| alanine racemase alr [Mycobacterium tuberculosis C]
 gi|134151546|gb|EBA43591.1| alanine racemase alr [Mycobacterium tuberculosis str. Haarlem]
 gi|148507439|gb|ABQ75248.1| alanine racemase [Mycobacterium tuberculosis H37Ra]
 gi|148723157|gb|ABR07782.1| alanine racemase alr [Mycobacterium tuberculosis F11]
 gi|224774959|dbj|BAH27765.1| putative alanine racemase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321973|gb|ACT26576.1| alanine racemase alr [Mycobacterium tuberculosis KZN 1435]
 gi|289417838|gb|EFD15078.1| alanine racemase [Mycobacterium tuberculosis T46]
 gi|289422080|gb|EFD19281.1| alanine racemase alr [Mycobacterium tuberculosis CPHL_A]
 gi|289440330|gb|EFD22823.1| alanine racemase alr [Mycobacterium tuberculosis KZN 605]
 gi|289540587|gb|EFD45165.1| alanine racemase alr [Mycobacterium tuberculosis K85]
 gi|289545402|gb|EFD49050.1| alanine racemase alr [Mycobacterium tuberculosis T17]
 gi|289687780|gb|EFD55268.1| alanine racemase alr [Mycobacterium tuberculosis 02_1987]
 gi|289692729|gb|EFD60158.1| alanine racemase alr [Mycobacterium tuberculosis T92]
 gi|289696140|gb|EFD63569.1| alanine racemase [Mycobacterium tuberculosis EAS054]
 gi|289711112|gb|EFD75128.1| alanine racemase alr [Mycobacterium tuberculosis GM 1503]
 gi|289715147|gb|EFD79159.1| alanine racemase alr [Mycobacterium tuberculosis T85]
 gi|298496700|gb|EFI31994.1| D-alanine racemase [Mycobacterium tuberculosis 94_M4241A]
 gi|323717910|gb|EGB27099.1| alanine racemase alr [Mycobacterium tuberculosis CDC1551A]
 gi|326905266|gb|EGE52199.1| alanine racemase alr [Mycobacterium tuberculosis W-148]
 gi|328460202|gb|AEB05625.1| alanine racemase alr [Mycobacterium tuberculosis KZN 4207]
          Length = 408

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/374 (26%), Positives = 166/374 (44%), Gaps = 26/374 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E + 
Sbjct: 40  VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 99

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVD 129
           LR     A +                 ++   +SS+ Q       +   G +    ++VD
Sbjct: 100 LRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVD 159

Query: 130 TGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG NR G+   +          +  +   +L  ++SH+  AD P   +N VQ +RF   +
Sbjct: 160 TGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFL 219

Query: 187 SHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEA 240
           +  +  G+    A L++SS  +  P+  F L RPGI++YG +         +   +T + 
Sbjct: 220 AQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKC 279

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            + L++   AGE VSYG      RD+ +A+  IGYADG   +L G             + 
Sbjct: 280 AVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRL-----------EV 328

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I G   P +G+I MD  M D+      +  GD   +FGP I       D A   GT +Y
Sbjct: 329 LINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHY 388

Query: 356 DLLVRIGTRYAKFY 369
           +++     R  + Y
Sbjct: 389 EVVTSPRGRITRTY 402


>gi|297538234|ref|YP_003674003.1| alanine racemase [Methylotenera sp. 301]
 gi|297257581|gb|ADI29426.1| alanine racemase [Methylotenera sp. 301]
          Length = 358

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 158/359 (44%), Gaps = 16/359 (4%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +      I L A ++N+          +  AV+K NAYG G    A A        F V 
Sbjct: 2   SRPAIAHIRLDAFRHNYRVAKQAHAG-KALAVIKANAYGHGAVHCAKA-IEGEADGFAVA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE ++LR       I +L G     E   I   +L  V+ +  Q+             
Sbjct: 60  CLEEALQLREAGIPEPILLLEGFFEAIELPEIVANDLWIVVHAQWQVEILFAA-KLAKPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G +R+GL   E +       N K     ++++H A AD+ SS+    Q+E F
Sbjct: 119 HVWLKMDSGMHRVGLPPDEYVQAYERLKNHKNVGKIVLMTHFANADNVSSNHTLQQIETF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           +         E SLA+S+ IL         TRPGI LYG    +     ++ V+   ++I
Sbjct: 179 QNTTQGLSA-EISLANSAAILGWKQAKCDWTRPGIMLYGADPLMKADAKLKPVMQLTSKI 237

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I I     GE + YG      RD+++ V A GYADGYP +              G    +
Sbjct: 238 ISISNVKQGESIGYGSIFTAERDTVVGVVACGYADGYPRSA-----------VTGTPIAV 286

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            G M  ++G+++MDM   D+TD  +  +G  ++++G  +  + VA ++GT  Y+L   +
Sbjct: 287 DGKMTRLIGRVSMDMLFVDLTDIPNATIGSQVELWGNQVSANAVATSAGTIAYELFCNV 345


>gi|163797505|ref|ZP_02191456.1| alanine racemase [alpha proteobacterium BAL199]
 gi|159177254|gb|EDP61813.1| alanine racemase [alpha proteobacterium BAL199]
          Length = 381

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 135/367 (36%), Positives = 196/367 (53%), Gaps = 15/367 (4%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL IDL A++ N+  +    G    A VVK + YGLG  ++APAL   G + FFV +++E
Sbjct: 14  RLTIDLGAVRRNYRRLVKELGGVPCAGVVKADGYGLGAARVAPALSAEGCRIFFVATLDE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
            V+LR   P A +  L G+  G E +     ++PV++++ Q+T +       G S P  L
Sbjct: 74  AVRLRPVLPDATVCCLNGLLAGTEDVFVAHRIVPVLNALDQITRWQTHGGRLGRSLPAIL 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTG NRLGL   E                  +ISHLA AD+P +  N++QL RF+ + 
Sbjct: 134 HVDTGMNRLGLGDDEWDRVLGTPGVLDGVDWQYLISHLAVADEPDNPANALQLARFQRVR 193

Query: 187 SHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                G++ASLA+SSGI LG  YHF L RPG++LYGG       +P++  +  E R++ +
Sbjct: 194 QRMPNGMKASLANSSGIFLGTPYHFDLGRPGVALYGGRPSSIGPNPLECPIRLEGRVLQV 253

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AG+ V YG      R S IA  A GYADGY  +LSG            G   +   
Sbjct: 254 RDVPAGDSVGYGNSWTAGRRSRIATVAAGYADGYLRSLSG-----------AGTVALGAR 302

Query: 306 MVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             P++G+++MD+   D+TD    E+  G ++++ GP I  D  A A+GT  Y+LL  +G 
Sbjct: 303 TCPVVGRVSMDLITVDVTDVPPAEIAPGTFVEVLGPTITPDAAADAAGTIGYELLTALGR 362

Query: 364 RYAKFYT 370
           RY + Y 
Sbjct: 363 RYVRHYV 369


>gi|300115384|ref|YP_003761959.1| alanine racemase [Nitrosococcus watsonii C-113]
 gi|299541321|gb|ADJ29638.1| alanine racemase [Nitrosococcus watsonii C-113]
          Length = 356

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/367 (27%), Positives = 175/367 (47%), Gaps = 21/367 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F +  ID +AL++N   +  L+  +R  AVVK + YG G   +A AL       F V  +
Sbjct: 3   FPQAIIDASALRHNLQRVRELAPRSRIMAVVKADGYGHGLTSVAGALVA--ADAFAVARL 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE + LR    +  + +L GI    Q ++     L  V+    QL    ++       P 
Sbjct: 61  EEAMALRQAGHRCPVVLLGGIADKEQLQLAAAHRLTLVVHEFAQLELLERV-PIISPLPV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+ DTG +RLG S + A +          +  +  +++HLA AD+    +  +QL+ F 
Sbjct: 120 WLKADTGMHRLGFSPEVAAEAVARLRGCPAVASVVGVMTHLASADESEDSLTPIQLQVFE 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
            + +   G+  S+A+S+ +++ P+ HF   RPG+ LYG +        +  +++V+T + 
Sbjct: 180 EIAA--PGLLRSMANSAAVIIYPHVHFDWVRPGLMLYGASPFAHGTGAAVGLKSVMTLKT 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I       G+ + YG         ++ VAA+GY DGYP                G   
Sbjct: 238 RLIATHHLRPGDSIGYGATWVCPEAMMVGVAALGYGDGYPRHA-----------RSGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  V ++G+++MDM   D+      +VGD +  +GPD+ +++VA  + T  Y+LL +
Sbjct: 287 LVNGRPVSLVGRVSMDMITLDLRTQPEAKVGDPVIAWGPDLPVEEVARHATTIPYELLCQ 346

Query: 361 IGTRYAK 367
           +  R  +
Sbjct: 347 VTARVPR 353


>gi|24112577|ref|NP_707087.1| alanine racemase [Shigella flexneri 2a str. 301]
 gi|30062707|ref|NP_836878.1| alanine racemase [Shigella flexneri 2a str. 2457T]
 gi|24051477|gb|AAN42794.1| alanine racemase 2 [Shigella flexneri 2a str. 301]
 gi|30040955|gb|AAP16685.1| alanine racemase 2 [Shigella flexneri 2a str. 2457T]
 gi|281600603|gb|ADA73587.1| Alanine racemase [Shigella flexneri 2002017]
 gi|313649368|gb|EFS13799.1| alanine racemase [Shigella flexneri 2a str. 2457T]
 gi|332760272|gb|EGJ90562.1| alanine racemase [Shigella flexneri K-671]
 gi|333019431|gb|EGK38714.1| alanine racemase [Shigella flexneri K-304]
          Length = 356

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQSDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGA 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|91206154|ref|YP_538509.1| alanine racemase [Rickettsia bellii RML369-C]
 gi|157826544|ref|YP_001495608.1| alanine racemase [Rickettsia bellii OSU 85-389]
 gi|122425170|sp|Q1RGU4|ALR_RICBR RecName: Full=Alanine racemase
 gi|91069698|gb|ABE05420.1| Alanine racemase [Rickettsia bellii RML369-C]
 gi|157801848|gb|ABV78571.1| alanine racemase [Rickettsia bellii OSU 85-389]
          Length = 410

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/416 (30%), Positives = 191/416 (45%), Gaps = 65/416 (15%)

Query: 9   LKIDLTALKNNWHSMNAL-----------------SGNAR-------------------- 31
           L+I+L+A+K N+  +  +                 +GN                      
Sbjct: 6   LEINLSAIKANYRLLKNICENSVDFLHNVANKEEFAGNTSPRTAAYTLVREDASLGSTPK 65

Query: 32  ------------TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY-TPQA 78
                         A VK N+YGLG  +I+  L     + FFV S  EG+ LR     + 
Sbjct: 66  LPLGASYAKNLLVGAAVKANSYGLGAIEISKTLLEENCRYFFVASSNEGISLRKAIGDEV 125

Query: 79  RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQVDTGFNRLGL 137
            I +L G+       + + NLIPV++++ Q+  + K  +      P  L  +TG NRLGL
Sbjct: 126 NILILNGVFEHDALELIEYNLIPVLNNLNQIKIWQKFSNLKNQLLPCYLHFNTGINRLGL 185

Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           +  E     +N    K   +  IISHL+ ++D  +  N  QL +F+  + ++   +ASLA
Sbjct: 186 NHNEIEQLINNRDLLKGLNVEYIISHLSASEDSDNPYNLEQLNKFKAYLEYFPNAKASLA 245

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKI-NKSHPMQTVVTAEARIILIRKALAGELVSY 256
           +S GI LG +YHF L RPG +LYG      NK +PMQ  VT +A II ++    G  + Y
Sbjct: 246 NSGGIFLGKDYHFNLVRPGAALYGLNPLGSNKPNPMQNPVTLKAPIIHLQNLTYGSRIGY 305

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
                  RDSLIA    GYADG+    S             G  FI    VPI+G+I+MD
Sbjct: 306 NMTFTTKRDSLIATLPFGYADGFSRNFSNQ-----------GTVFINSRNVPIIGRISMD 354

Query: 317 MTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +   D+TD    ++  G  ++I G +   D +A   GT  Y++L  +G RY + YT
Sbjct: 355 LVNIDVTDLPPSDIFLGQEVEIIGNNCTPDKIADIIGTIGYEILTSLGNRYKRIYT 410


>gi|254827830|ref|ZP_05232517.1| alanine racemase [Listeria monocytogenes FSL N3-165]
 gi|258600211|gb|EEW13536.1| alanine racemase [Listeria monocytogenes FSL N3-165]
          Length = 368

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 158/379 (41%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A    +AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKDAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +        + + ++   +
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEAT 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G   PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|297582852|ref|YP_003698632.1| alanine racemase [Bacillus selenitireducens MLS10]
 gi|297141309|gb|ADH98066.1| alanine racemase [Bacillus selenitireducens MLS10]
          Length = 405

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 154/377 (40%), Gaps = 31/377 (8%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +IDL A+ +N  ++ A L  +    AVVK NAYG G   +A    +AG     V  ++
Sbjct: 27  WAEIDLNAIHDNVTAIKASLPAHTEMMAVVKANAYGHGAVDVAREALDAGATYLGVAILD 86

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125
           E + LR     A I VL  I      I  + ++   +     L      L + G      
Sbjct: 87  EAIALRKAGIGAPILVLGYIRAEDILIASELDIAVTVFQKDWLEKAESLLRAAGRKAVCH 146

Query: 126 LQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++D+G  R+GL   +E  +            +    +H+A AD+P +    VQ ERF  
Sbjct: 147 VKLDSGMGRIGLRKEEEIRELAEVLKASLHIHVEGAYTHMAAADEPGNDYYHVQKERFLD 206

Query: 185 LISHY------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQT 234
           ++         K      A+S+  L        L R GIS+YG         +   P++ 
Sbjct: 207 MMDWLESSLGEKVKIRHCANSASALRFHEESCNLVRVGISMYGMAPSVEMKPDMKVPLKQ 266

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ ++RI  ++    GE +SYG   + +    I    IGYADG+               
Sbjct: 267 AMSLKSRITQVKLLEPGEGISYGSTYRTSGHEWIGTVPIGYADGWIRAHQS--------- 317

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   +KG    I+G+I MD  M  +     +E G  + + G D    + +D+VA   
Sbjct: 318 ---GDVLVKGKRAKIVGRICMDQMMILLDG--PVETGTEVTLIGEDGGSFLSMDEVAGRI 372

Query: 351 GTTNYDLLVRIGTRYAK 367
            T +Y++   +  R  +
Sbjct: 373 DTISYEIPCTLSYRVPR 389


>gi|190149523|ref|YP_001968048.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189914654|gb|ACE60906.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 374

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/380 (25%), Positives = 166/380 (43%), Gaps = 31/380 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  
Sbjct: 2   KPATATISREALRHNIELIKTFTPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLT------------- 110
           + E ++++      +I ++ G    +E +         VI    QL              
Sbjct: 61  LREALEIQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAKEWQQEQ 120

Query: 111 ---FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
              F+ +           L++DTG +RLG+  ++   F        L +    +SH + A
Sbjct: 121 QKGFWKRKAKIYFPINVWLKIDTGMHRLGVHPEKVDMFYQRLKACPLVESISFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225
           D+P       Q+  F    S Y   E S+++SSGIL     H+   RPGI ++G +    
Sbjct: 181 DEPDCGYTEKQIAVFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP     
Sbjct: 241 PITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYPR---- 296

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                  +   G    + G +VPI+G+++MDM   D+      +VGD +  +G D+ +++
Sbjct: 297 -------NAPEGTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEE 349

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA   G  +Y+L+ ++  R 
Sbjct: 350 VAQHIGVISYELITKLTPRV 369


>gi|257870946|ref|ZP_05650599.1| alanine racemase [Enterococcus gallinarum EG2]
 gi|257805110|gb|EEV33932.1| alanine racemase [Enterococcus gallinarum EG2]
          Length = 373

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 150/380 (39%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+K N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTKAIIDLKAIKENVENEVARLPKATDLFAVVKANGYGHGAIETATAALEGGASGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
            +V+EG++LR       I VL  +      ++   NL   +S+   L   +  +      
Sbjct: 66  ATVDEGIELREAGFSEPILVLGIVSVADIGLLSYYNLSFPVSTNEWLQEAAAFLQKNPVT 125

Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VDTG  R+G  S +E L        + L     + +H A AD         Q
Sbjct: 126 NPLKVHLKVDTGMGRIGFISNEELLSAVKWLQEQSLFTWEGVFTHFATADQADDTYWQEQ 185

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            +RF+T ++    +       +S+  L        + R GI++YG       + +++P++
Sbjct: 186 NQRFQTALACLPELPRYVHAGNSATALWHAEAVGNMVRYGIAMYGLNPSGTALPETYPLK 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++  + ++ ++    G  + YG      +   I    IGYADG+   + G        
Sbjct: 246 PALSLVSELVQVKLLEKGAGIGYGETYITPQAEWIGTVPIGYADGWLRKMQGFSL----- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   + G    I+G++ MD  M  +  S     G  + + G D    I +  VA  
Sbjct: 301 -------LVAGEYCEIVGRVCMDQLMIRLPRSFPA--GTKVTLIGEDNGQCITMQKVAEQ 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++   +  R  + Y
Sbjct: 352 LETIHYEVACTLSARVPREY 371


>gi|157160693|ref|YP_001458011.1| alanine racemase [Escherichia coli HS]
 gi|170020442|ref|YP_001725396.1| alanine racemase [Escherichia coli ATCC 8739]
 gi|188493753|ref|ZP_03001023.1| alanine racemase 2, catabolic [Escherichia coli 53638]
 gi|194437125|ref|ZP_03069224.1| alanine racemase [Escherichia coli 101-1]
 gi|253773812|ref|YP_003036643.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161272|ref|YP_003044380.1| alanine racemase [Escherichia coli B str. REL606]
 gi|300928267|ref|ZP_07143804.1| alanine racemase [Escherichia coli MS 187-1]
 gi|301648159|ref|ZP_07247912.1| alanine racemase [Escherichia coli MS 146-1]
 gi|307137803|ref|ZP_07497159.1| alanine racemase [Escherichia coli H736]
 gi|312971372|ref|ZP_07785547.1| alanine racemase [Escherichia coli 1827-70]
 gi|331641716|ref|ZP_08342851.1| alanine racemase [Escherichia coli H736]
 gi|157066373|gb|ABV05628.1| alanine racemase [Escherichia coli HS]
 gi|169755370|gb|ACA78069.1| alanine racemase [Escherichia coli ATCC 8739]
 gi|188488952|gb|EDU64055.1| alanine racemase 2, catabolic [Escherichia coli 53638]
 gi|194424108|gb|EDX40096.1| alanine racemase [Escherichia coli 101-1]
 gi|242376970|emb|CAQ31692.1| alanine racemase 2, PLP-binding [Escherichia coli BL21(DE3)]
 gi|253324856|gb|ACT29458.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973173|gb|ACT38844.1| alanine racemase [Escherichia coli B str. REL606]
 gi|253977387|gb|ACT43057.1| alanine racemase [Escherichia coli BL21(DE3)]
 gi|300463736|gb|EFK27229.1| alanine racemase [Escherichia coli MS 187-1]
 gi|301073745|gb|EFK88551.1| alanine racemase [Escherichia coli MS 146-1]
 gi|310335969|gb|EFQ01169.1| alanine racemase [Escherichia coli 1827-70]
 gi|315615973|gb|EFU96599.1| alanine racemase [Escherichia coli 3431]
 gi|323962767|gb|EGB58345.1| alanine racemase [Escherichia coli H489]
 gi|323973413|gb|EGB68600.1| alanine racemase [Escherichia coli TA007]
 gi|331038514|gb|EGI10734.1| alanine racemase [Escherichia coli H736]
          Length = 356

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|153812757|ref|ZP_01965425.1| hypothetical protein RUMOBE_03164 [Ruminococcus obeum ATCC 29174]
 gi|149831117|gb|EDM86206.1| hypothetical protein RUMOBE_03164 [Ruminococcus obeum ATCC 29174]
          Length = 380

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 163/385 (42%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M   E ++  + L A+ +N+  M   ++   R  AV+K + YG G E I+  + +   + 
Sbjct: 1   MKKFERVKAVVSLDAIAHNFEEMKKNIADGTRIVAVIKADGYGHGAEAISRLIEDYEYIW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
            F   + EE ++L+    +  + +L  +     + +   ++   +         S + + 
Sbjct: 61  GFATATAEEAIQLKDAGIEKPVLILGLVFEEYFQELIRKDVRLTVCEYDVAKILSDEAVR 120

Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G      + +DTG +R+G + + E+++           ++  + +H A AD+       
Sbjct: 121 QGRQVHIHIALDTGMSRIGFADKPESVEEIKKIAALPNVEIEGMFTHFARADETDKAPAV 180

Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            QL+R+ T     +           ++S+GI+  P  +  L R GI++YG          
Sbjct: 181 EQLKRYLTFADLLEKAGVQIPLKHCSNSAGIIRMPEANLNLVRAGITIYGIYPSDEVERD 240

Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +   +  +  ++ +  ++   AG  +SYGG      D  +A   +GYADGYP TLS    
Sbjct: 241 IVKLKPAMELKSHVAYVKDLPAGTAISYGGTFASENDLRVATIPVGYADGYPRTLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G   PILG++ MD  M D+T    ++ GD + + G D    I ++
Sbjct: 298 --------KGWVLIHGQKAPILGRVCMDQFMVDVTHIPDVKHGDEVTLIGRDGDEFISIE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
                SG  +Y+    I  R  + Y
Sbjct: 350 TFGDMSGRFSYEFACDISKRVPRVY 374


>gi|306829934|ref|ZP_07463121.1| alanine racemase [Streptococcus mitis ATCC 6249]
 gi|304427945|gb|EFM31038.1| alanine racemase [Streptococcus mitis ATCC 6249]
          Length = 367

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 160/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M N +       AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRKNIQQMGNHIPKGTLKWAVVKANAYGHGAVAVATAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I +L         +  D ++   ++ +  +       +     
Sbjct: 65  SNIDEAIELRQAGVSKKILILGVSEIEAIDLAKDYDITLTVAGLEWIRVLLATGADLSGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +   +   ++  ++  I +H A AD+ S    + QLERF
Sbjct: 125 SVHLKIDSGMGRIGFREASEAEEAQDLLKQEGARVEGIFTHFATADEASDTYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T++S  K +      ++S+  L      F   R G ++YG       ++  + +   ++
Sbjct: 185 KTILSSMKEVPELIHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLTPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQTDSEQIIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKVYPL--GTKVTLIGSDGDKEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|316933684|ref|YP_004108666.1| alanine racemase [Rhodopseudomonas palustris DX-1]
 gi|315601398|gb|ADU43933.1| alanine racemase [Rhodopseudomonas palustris DX-1]
          Length = 415

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 183/364 (50%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  +  A VVK +AYG G   +  AL  AG + FFV ++ E 
Sbjct: 36  LTIDLDALVANWRKLEKTAVPSECAGVVKGDAYGCGAGPVVKALLGAGCKTFFVATLGEA 95

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
             +R   P+A ++VL G  P         N  PVI  + +L  +       G     AL 
Sbjct: 96  RAVREVAPEATLYVLDGFFPYSGDEFARLNCQPVIGDLYELAEWDVFCRRTGWRGGAALH 155

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLGL++ EA            G ++L++SHLACAD  +  +N+ Q+  FR +  
Sbjct: 156 IDTGMSRLGLTITEAQGIVPRIVAGDHG-ITLVMSHLACADLVNHPLNARQVTAFREIAG 214

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSGI LGP + F L RPG +LYG        +PMQ VV  +ARI+ +R 
Sbjct: 215 QFTGVSASLSASSGIFLGPQFAFDLVRPGAALYGINPTPEADNPMQPVVDLKARIVQVRS 274

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YG      R S IAV + GYADGY       D         G +  I G   
Sbjct: 275 VERGDTVGYGATWSARRPSKIAVLSAGYADGYFRAAGSSDGTR------GAEVIIAGERC 328

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI G+I+MD+   D+TD    +   G    + G  I +D++    GT  Y++L  +G RY
Sbjct: 329 PIAGRISMDLLAVDVTDLPANAARRGMMATLIGDGITVDELGHHFGTIGYEVLTSLGPRY 388

Query: 366 AKFY 369
            + Y
Sbjct: 389 TRIY 392


>gi|154706770|ref|YP_001424314.1| alanine racemase, biosynthetic [Coxiella burnetii Dugway 5J108-111]
 gi|189027532|sp|A9KFM0|ALR_COXBN RecName: Full=Alanine racemase
 gi|154356056|gb|ABS77518.1| alanine racemase, biosynthetic [Coxiella burnetii Dugway 5J108-111]
          Length = 364

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 172/370 (46%), Gaps = 25/370 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                I++TALK+N   + AL+  +    ++K N YG G  ++A AL +A    F V  +
Sbjct: 3   RATATINVTALKHNLSQIKALAPKSLAWVMIKSNGYGHGLVRVAKALSDANA--FGVACI 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +E + LR    ++ I V+ G +   E        L  VI    Q++   K  +   S   
Sbjct: 61  DEALTLREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEK-TNLTSSLSV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFR 183
            L++DTG NRLG S++++    +        Q    +++HLA AD+ +     +Q++RF 
Sbjct: 120 WLKIDTGMNRLGFSVEQSPAVYNQLKTSSSIQKPIGLMTHLADADNENKTFTELQIKRFF 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--------KINKSHPMQTV 235
           ++     G   S+ +S+G    PN      RPGI LYG +         K       + V
Sbjct: 180 SVTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKKFRPV 238

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A+II I+     + V YG       D  IA+ +IGY DGYP               
Sbjct: 239 MTLSAKIIAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYPRHA-----------P 287

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G + P++G+++MDM   D+    + +VGD + ++G  + ++ +A  +GT  Y
Sbjct: 288 SGTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIAY 347

Query: 356 DLLVRIGTRY 365
           +LL +I  R 
Sbjct: 348 ELLCKITQRV 357


>gi|253731093|ref|ZP_04865258.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725168|gb|EES93897.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 390

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 168/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 10  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 70  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 129

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 130 QEKKLWLHIKLDTGMGRLGIKDTNTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 185

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 186 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQPKV 245

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 246 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 304

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 305 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 351

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            VA    T NY++L  +  R  + Y
Sbjct: 352 VVAEKQHTINYEVLCNLSRRLPRIY 376


>gi|170696497|ref|ZP_02887622.1| alanine racemase [Burkholderia graminis C4D1M]
 gi|170138600|gb|EDT06803.1| alanine racemase [Burkholderia graminis C4D1M]
          Length = 356

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 156/367 (42%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   I  +AL NN       +  ++  AVVK NAYG G  +  P L       F +  
Sbjct: 3   RPLSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARAFPGLRA--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE VKLR       I +L G   P    +I   +L   + S  QL    ++        
Sbjct: 61  LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRML-EMARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +   +      +++H + AD       + Q+E F 
Sbjct: 120 IQLKMNSGMNRLGYTPEKFRAAWERARACQGVGQITLMTHFSDADSERG--VAHQMEAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G   SLA+S+  L  P  HF   RPGI LYG +        +   +Q  +T  
Sbjct: 178 RGAQGIAGA-RSLANSAATLWHPQSHFDWVRPGIILYGASPSGVSAAIQGTGLQPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG   K      I V A GYADGYP                G  
Sbjct: 237 SELIAVQNIAEGQTVGYGSLFKARGPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+ 
Sbjct: 286 VIVDGVRTRIVGRVSMDMLTVDLTPVPTANVGSRVELWGASLPIDDVARACGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|299067425|emb|CBJ38624.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum CMR15]
          Length = 368

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 94/361 (26%), Positives = 158/361 (43%), Gaps = 18/361 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL NN   +   + ++R  AV+K NAYG G E+    L       F +  ++E V+
Sbjct: 2   IHGPALANNLQVVRRHAAHSRVWAVIKANAYGHGIERAYEGLRQ--ADGFGLLDLDEAVR 59

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR    Q  I +L G   P    ++    L   +    QL    +L          L+++
Sbjct: 60  LRQLGWQGPILLLEGFFKPEDLALVEQYRLTTTVHCEEQLRML-ELARLKGPVSIQLKIN 118

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           TG +RLG +         ++         + ++H + AD P       QL  F       
Sbjct: 119 TGMSRLGFAPAAYRAAWEHARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFEQATQGL 176

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILI 245
            G EASL++S+  L  P+ H    RPG+ LYG +        +   +   +T ++ +I I
Sbjct: 177 PG-EASLSNSAATLWHPSAHRDWVRPGVILYGASPTGVAADIEGTGLMPAMTLKSELIAI 235

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +    G  + YG + +  +   I + A GYADGYP    G D  ++P         + G 
Sbjct: 236 QDVQPGATIGYGSRFEAEQPMRIGIVACGYADGYPRHAPGWDGNYTP-------VLVDGV 288

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
              ++G+++MDM   D+ +     VG  + ++G  + +D+VA A+GT  Y+L+  +  R 
Sbjct: 289 RTRMVGRVSMDMITVDLAEVPGARVGAPVTLWGQGLPIDEVAHAAGTVGYELMCALAPRV 348

Query: 366 A 366
            
Sbjct: 349 P 349


>gi|261493404|ref|ZP_05989930.1| alanine racemase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496669|ref|ZP_05993049.1| alanine racemase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307872|gb|EEY09195.1| alanine racemase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311048|gb|EEY12225.1| alanine racemase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 374

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 165/380 (43%), Gaps = 31/380 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     ID  AL++N   + + +   +  A++K NAYG G    A  L +  V  F V  
Sbjct: 2   KPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLPAAGTLADM-VDGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMS------ 117
           + E ++++      +I ++ G    +E +         VI ++ QL    ++        
Sbjct: 61  LREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHNLEQLELLEQVAKEWQAEQ 120

Query: 118 ----------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
                             L++DTG +RLG+  ++   F     N  L      +SH + A
Sbjct: 121 QKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVERLKNCALVNSISFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225
           D+        Q+  F      Y+  + S+++SSGIL     H+   RPGI ++G +    
Sbjct: 181 DELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP     
Sbjct: 241 PITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVIAMGYGDGYPR---- 296

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                  +   G    I G +VPI+G+++MDM   D+      +VGD    +G  + ++D
Sbjct: 297 -------NAPEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKVGDKAIFWGEQLLIED 349

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA   G  +Y+L+ ++  R 
Sbjct: 350 VAKHIGVISYELITKLTPRV 369


>gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 851

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 174/374 (46%), Gaps = 22/374 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    ++IDL AL +N  ++    G     AV+K +AYG G  + A  +   G     V 
Sbjct: 481 DRPTTVRIDLDALASNVQAIRQAVG-VPVMAVLKADAYGHGAVRSARTVLLNGASSLAVA 539

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
           ++ E + LR     A I +L      Q +      +   +       + + + ++ G+  
Sbjct: 540 TLGEALHLRQADIAAPILILGYTPTWQMREALLNRISVALFDRHVAQSLHEQALALGLKA 599

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++DTG  RLGL++++A+DF          ++  I +H A AD+  +    +QL+RF
Sbjct: 600 QVHIKIDTGMARLGLAVEQAVDFIEWLQGLAGIEVVGIFTHFANADEADASFFGLQLQRF 659

Query: 183 RTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           +TL+     +G+       A+S+  ++ P+  + + R GI+LYG     +    +Q V+ 
Sbjct: 660 QTLLDQLTQRGLRPPVVHAANSAAAMVHPSARYDMVRAGIALYGIDPSSDVHLNLQPVLE 719

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  +  +R+  AG  +SYG     +R S IA   +GYADG+                  
Sbjct: 720 FQTEVAQVRELPAGSPISYGCTFVTSRISRIATIPVGYADGFRRAPQPWR---------- 769

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            +  I G  VP++G++ MD  M D+T+  S++ GD + + G      I+ ++VA   GT 
Sbjct: 770 -EVLIHGQRVPVVGRVCMDYAMIDVTELDSVQRGDQVVLIGQQGTDRIRAEEVAEWLGTN 828

Query: 354 NYDLLVRIGTRYAK 367
            Y+++  I  R  +
Sbjct: 829 AYEVVSAILPRVPR 842


>gi|313634120|gb|EFS00784.1| alanine racemase [Listeria seeligeri FSL N1-067]
          Length = 371

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 149/379 (39%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID +A++ N  +    L  N    AVVK NAYG G  ++A     AG + F V
Sbjct: 9   HRPTWIEIDRSAIRENIKNEQKKLPKNVAVWAVVKANAYGHGIIEVAKTAKEAGAKGFCV 68

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    N+   I     L      +     
Sbjct: 69  AILDEALALREAGFQDDFILVLGATRKEDANLAAHNNISLTIFREDWLDG----VHLETP 124

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L++D+G  RLG+ S +EA           +  L    +H A AD   +     QL 
Sbjct: 125 LKVHLKIDSGMGRLGIRSAEEAEQIEAKIVQTDMFFLEGAYTHFATADQLETSYFEQQLA 184

Query: 181 RFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQT 234
           +F  ++   K        A+S+  LL     F   R GIS+YG    I    N    ++ 
Sbjct: 185 KFDAILKGLKSRPRFVHAANSAAALLQSQIGFDAVRFGISMYGLAPSIEIKSNLPFKLKP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ ++K   G+ VSYG     T    IA   IGYADG     SG         
Sbjct: 245 ALALYTEMVHVKKLAPGDSVSYGATYTATEREWIATLPIGYADGLIRHYSGF-------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               +  + G   PI+G++ MD T+  +      + G  + I G D    +  DD A   
Sbjct: 297 ----QVLVDGKKAPIIGRVCMDQTIIKLP--YEFQTGTKVTIIGMDHGNSVTADDAAKYL 350

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 351 DTINYEVTCLLTERIPRKY 369


>gi|289167441|ref|YP_003445710.1| alanine racemase [Streptococcus mitis B6]
 gi|288907008|emb|CBJ21842.1| alanine racemase [Streptococcus mitis B6]
          Length = 367

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVTVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I +L         +  + ++   ++ +  +       +     
Sbjct: 65  SNIDEAIELRQAGLSKKILILGVSEIEAVSLAKEYDITLTVAGLEWIQALLDKEADLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +   +   +    +  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREAGEAEQAQDLLQQHGAYVEGIFTHFATADEESDTYFNTQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T++   KG+      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILESMKGLPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYGLTPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++    G  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPVGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|332297980|ref|YP_004439902.1| Alanine racemase [Treponema brennaborense DSM 12168]
 gi|332181083|gb|AEE16771.1| Alanine racemase [Treponema brennaborense DSM 12168]
          Length = 390

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/383 (25%), Positives = 155/383 (40%), Gaps = 35/383 (9%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L++N  ++   +    R    VK +AYG G  + A      GV    V +V EG+
Sbjct: 17  IYLDNLRHNLAAIRTCIKPETRICVPVKADAYGHGAVQTARTAQECGVSYLAVAAVSEGI 76

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQV 128
           +LR    +  I +L    P +   I    L+P +     +   S+  +      P  L++
Sbjct: 77  ELREAGIELPILLLSVPQPEEFAEIVSYALMPAVFDAEFIDLLSETAVRMKRRLPVHLKI 136

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERFRTL 185
           DTG  R+G   +EA             +L+ + +H A AD            Q+ERF   
Sbjct: 137 DTGMGRIGCPAEEAARLAERISKSAALELAGVFTHFAAADSLVPADEAYTHGQIERFVQA 196

Query: 186 ISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD---------KINKSHP 231
           +   +           ASS+ IL  P   F + RPGI +YG            +  +   
Sbjct: 197 VDSIRDRHINPGIVHCASSAAILQYPEAQFDMVRPGIIVYGYYPGDITEDYLQRAGRPLH 256

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ ++   ++I  I+   AGE +SYG       D  I V  IGYADG     +       
Sbjct: 257 LKPLLEVRSKISAIKPIRAGESISYGRTWTADSDGEIGVIPIGYADGIIRRFAPDI---- 312

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDV 346
                  +  + G   P+ G+I MD  M D+  +  +   D   IFGP         +D+
Sbjct: 313 -------RISVNGRAYPVRGRICMDQCMIDLGKNSGVSRWDDAIIFGPKENGAACSAEDL 365

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A+GT +Y++L  I  R  + Y
Sbjct: 366 AQATGTISYEILCGINKRVPRVY 388


>gi|182436579|ref|YP_001824298.1| putative alanine racemase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465095|dbj|BAG19615.1| putative alanine racemase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 392

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/382 (26%), Positives = 166/382 (43%), Gaps = 29/382 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R +IDL AL+ N   +   +  A+  AVVK + YG G    A A   AG       + 
Sbjct: 8   RARAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAAREAGATWLGTATP 67

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR      RI        G  +   + ++   +  +       +   + G +   
Sbjct: 68  QEALALRAAGLDGRIMCWLWTPGGPWREAIEADIDVSVGGMWALREVVAAAAAAGRTARI 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G    +  +    +   +     +++ + SH ACAD+P     + QL  
Sbjct: 128 QLKADTGLGRGGCQPADWPELVGEALAAERAGRVEVTGLWSHFACADEPGHPSIAAQLAV 187

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232
           +R L+++   +G+E     LA+S   L  P  HF L R GI++YG +            +
Sbjct: 188 YRDLVAYAEKEGVEPEVRHLANSPATLTIPEAHFDLVRTGIAMYGVSPAPELGTSADLGL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T  A + L++ A AG  +SYG     T ++ + +  +GYADG P   SG       
Sbjct: 248 RPVMTLAASVALVKDAPAGHGISYGHHYTTTAETTLGLIPVGYADGVPRHASGT------ 301

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                G   + G +  + G++ MD  + D+ D    E G    +FGP    +    D A 
Sbjct: 302 -----GPVLVGGKVRRVAGRVAMDQFVVDL-DGDRPEAGAEAVLFGPGDRGEPTAQDWAE 355

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
           A+GT  Y+++ RIGTR  + Y 
Sbjct: 356 AAGTIAYEIVTRIGTRVPRVYV 377


>gi|215486418|ref|YP_002328849.1| alanine racemase [Escherichia coli O127:H6 str. E2348/69]
 gi|312966424|ref|ZP_07780646.1| alanine racemase [Escherichia coli 2362-75]
 gi|215264490|emb|CAS08857.1| alanine racemase 2, PLP-binding [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288877|gb|EFR16775.1| alanine racemase [Escherichia coli 2362-75]
          Length = 356

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SLA+S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLANSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +   +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVLTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|220918668|ref|YP_002493972.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956522|gb|ACL66906.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 395

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 154/373 (41%), Gaps = 19/373 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL AL +N   + A +  AR  AVVK NAYG G      A   AG     V  
Sbjct: 14  RPVWAEIDLDALAHNVRLLAARASPARLYAVVKANAYGHGAVACGRAALEAGAHGLAVVC 73

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123
           V+E  +LR    +A + V+          +    L P + ++  +    ++    G   P
Sbjct: 74  VDEAEELRRAGVEAPLLVIGNTPASDAARVVALRLRPAVGAMDLVEALSAEARRRGAEVP 133

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NR GL     +     +      ++  + +H A A++        Q E  R
Sbjct: 134 IHLELESGLNRHGLPPDALVALAERARALPGLRVEGLFTHFAAAEEGDQRFTRAQFEVLR 193

Query: 184 TLISHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEA 240
                   + E   ++S+ ILL      +  R G+SLYG            ++ V++  A
Sbjct: 194 ETSRRLPWVPERHCSASASILLDHEMALEAVRGGLSLYGYRPAPWCGTDADLRPVMSLRA 253

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  +     G  V YG      R + +A+   GYADGY  +                + 
Sbjct: 254 RVARVSDVDRGATVGYGRTWAANRPTRVALVMCGYADGYRRSFGNR-----------TQV 302

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            + G   P++G++ MDM M D+T    +  GD + + G D    +  DD+A  + T +++
Sbjct: 303 LVHGRRAPVVGRVAMDMCMVDVTAVPGVAPGDVVTLIGRDGDERVDADDLATIADTISWE 362

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 363 ILAGISARVPRLY 375


>gi|169829733|ref|YP_001699891.1| alanine racemase [Lysinibacillus sphaericus C3-41]
 gi|168994221|gb|ACA41761.1| Alanine racemase [Lysinibacillus sphaericus C3-41]
          Length = 389

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 164/386 (42%), Gaps = 31/386 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M + ++ R     IDL A++ N  ++   +  N +  AVVK NAYG G   +A A   AG
Sbjct: 17  MKTQQYFRPTKAMIDLQAIQQNIKNLKKFIRPNVQIIAVVKANAYGHGDVAVAQAALEAG 76

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V + +E + +R +  +  I +L         I     ++  + +   +   + L+
Sbjct: 77  ATILAVATPDEALHIRAHFEEPDILILGASPVSFAPIAAQQRIMLTVYASEWVQQAAPLL 136

Query: 117 SC-GVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           +         ++VD+G  R+G+ S Q+ L       +    +L+ I +H A AD+  +  
Sbjct: 137 AKEAEPLQLHIKVDSGMGRIGIRSEQDLLALYQTIESIDNVELNGIFTHFATADEKDTTY 196

Query: 175 NSVQLERFRTLISHY--KGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTD----KIN 227
              Q++ F + ++    K +    ++++  L    N  +   R GIS+YG +     +  
Sbjct: 197 FDEQVQFFESCLAVMPKKPLLVHASNTAASLVKDSNLQYDAVRYGISMYGLSPSSYVESI 256

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q   + E+ ++ +++   GE V YG       +  I    IGYADG    L G  
Sbjct: 257 LPFALQPAFSLESELVHVKEIKKGESVGYGATYVAPSNMWIGTIPIGYADGVIRKLGGQ- 315

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      +  I G  +PI+G+I MD  M  +  +    +G+ + + G      I +
Sbjct: 316 -----------EVLIDGQRMPIVGRICMDQCMVALPKAY--AIGEKVTLIGQQGQNRISI 362

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           D+ A    T NY++   I  R  + Y
Sbjct: 363 DEWATKLETINYEIPCIITARVPRIY 388


>gi|110641415|ref|YP_669145.1| alanine racemase [Escherichia coli 536]
 gi|191171055|ref|ZP_03032606.1| alanine racemase [Escherichia coli F11]
 gi|300996024|ref|ZP_07181358.1| alanine racemase [Escherichia coli MS 200-1]
 gi|110343007|gb|ABG69244.1| alanine racemase, catabolic [Escherichia coli 536]
 gi|190908787|gb|EDV68375.1| alanine racemase [Escherichia coli F11]
 gi|300304631|gb|EFJ59151.1| alanine racemase [Escherichia coli MS 200-1]
 gi|324015669|gb|EGB84888.1| alanine racemase [Escherichia coli MS 60-1]
          Length = 356

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +   +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVLTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|253733096|ref|ZP_04867261.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728929|gb|EES97658.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 390

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 168/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 10  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 70  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 129

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 130 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 185

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 186 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 245

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 246 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 304

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          +D
Sbjct: 305 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVD 351

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            VA    T NY++L  +  R  + Y
Sbjct: 352 VVAEKQHTINYEVLCNLSRRLPRIY 376


>gi|126651486|ref|ZP_01723690.1| D-alanine racemase [Bacillus sp. B14905]
 gi|126591739|gb|EAZ85835.1| D-alanine racemase [Bacillus sp. B14905]
          Length = 389

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 160/386 (41%), Gaps = 31/386 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M + ++ R     I+L A++ N  ++   +  N +  AVVK NAYG G   +A A   AG
Sbjct: 17  MKTQQYFRPTKAMINLQAIQQNVKNLKKFIRPNVQIIAVVKANAYGHGDVAVAQAALEAG 76

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL- 115
                V + +E + +R +     I +L               ++  +     +   + L 
Sbjct: 77  ATILAVATPDEALHIRAHFEDPDILILGASPVSFAPFAAQQRIMLTVYGSEWVQQAAPLI 136

Query: 116 MSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
            +  +     ++VD+G  R+G+ S Q+ L       +    +L+ I +H A AD+  +  
Sbjct: 137 ANEALPLLLHMKVDSGMGRIGIRSEQDLLALYQTIESTDNVELNGIFTHFATADEKDTTY 196

Query: 175 NSVQLERFRTLISHY--KGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTD----KIN 227
              Q++ F + ++    K      ++++  L    N  +   R GIS+YG +     +  
Sbjct: 197 FDQQVQFFESCLAVLPIKPPLVHASNTAASLVKDSNLQYDAVRYGISMYGLSPSSYVESI 256

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +Q   + E+ ++ +++   GE V YG       D  I    IGYADG    L G  
Sbjct: 257 LPFALQPAFSLESELVHVKEIKKGESVGYGATYVAPTDMWIGTLPIGYADGVIRKLGGQ- 315

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      +  I G  +PI+G+I MD  M  +  +    +G+ + + G      I +
Sbjct: 316 -----------EVLIDGQRMPIVGRICMDQCMVALPKAY--AIGEKVTLIGQQGQNRISI 362

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           D+ A    T NY++   I  R  + Y
Sbjct: 363 DEWATKLETINYEIPCMITARVPRIY 388


>gi|218281653|ref|ZP_03488054.1| hypothetical protein EUBIFOR_00621 [Eubacterium biforme DSM 3989]
 gi|218217260|gb|EEC90798.1| hypothetical protein EUBIFOR_00621 [Eubacterium biforme DSM 3989]
          Length = 383

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/383 (25%), Positives = 164/383 (42%), Gaps = 30/383 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                +ID  A+++N   +  L  N +   +VK NAYGLG    A AL   GV  F V+S
Sbjct: 6   SRAWTEIDYDAIRHNVKEVKKLVKNTKIMGIVKANAYGLGDVACAKALQKCGVDYFGVSS 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHP 123
           ++E + LR    Q  I +L          + + N++  + S+      +       V   
Sbjct: 66  IDEALNLRNAGIQDNILILGYTPSMHFHYLHEQNIVQSLVSIEYARELNAYAKENDVKIR 125

Query: 124 YALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNSV 177
              +VDTG  R G+  QE    ++  +  +  +   +  I SH   +D      +     
Sbjct: 126 CHCKVDTGMCRTGIVYQEQDKHIEDIYEEYRLENLCVEGIFSHFPVSDCLDEDCTEFTKK 185

Query: 178 QLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD----KINK 228
           Q++ F  +I   K  GI+     L +S GIL  P   ++  RPG+   G T     KI  
Sbjct: 186 QIQLFDEVIDLLKSQGIDPGIRHLQNSYGILNYPELEYEYCRPGLLYMGVTSDDHIKIKT 245

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +     +++  A + L++    G+ VSYG      + + +A  +IGYADG P  LS    
Sbjct: 246 NPDFIPIMSMYANVSLVKWIYPGQSVSYGRHFIAEKPTKVATMSIGYADGLPRLLSNQ-- 303

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                   G +  + G    ++G + MD  M D+T+   ++ GD + I G      + +D
Sbjct: 304 --------GFEVLVHGQRCKLIGNLCMDQCMIDVTEVEDVKEGDVVCIVGHQGNEVVTVD 355

Query: 345 DVALASGTTNYDLLVRIGTRYAK 367
            ++  + T N + L  I +R  +
Sbjct: 356 QISRMAKTINNETLTSISSRVPR 378


>gi|116493287|ref|YP_805022.1| alanine racemase [Pediococcus pentosaceus ATCC 25745]
 gi|122265249|sp|Q03DZ2|ALR_PEDPA RecName: Full=Alanine racemase
 gi|116103437|gb|ABJ68580.1| alanine racemase [Pediococcus pentosaceus ATCC 25745]
          Length = 374

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 157/381 (41%), Gaps = 32/381 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +L I+  A++NN  + ++ L G++   AVVK N YG G  + A     AG   F V
Sbjct: 6   HRPSKLVINAEAIRNNVKNEISRLDGHSELFAVVKANGYGHGIVETAQFTKQAGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR       I VL        K+  + ++   +     L   +++++     
Sbjct: 66  AILDEALALRDAGLTETILVLGITDVKYAKLAAENDISLTVGDQAWLDEATQILNQ-KPL 124

Query: 123 PYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
              L +DTG  R+G     S ++A D+   S          + +H A AD+  +   ++Q
Sbjct: 125 KVHLGIDTGMGRIGFQDGASFKKAADYLEQSQQ---FNFEGVFTHFATADEKDTTYFNLQ 181

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
           +ERF   IS    +     +++++  L     +  + R G+ +YG       +     +Q
Sbjct: 182 VERFNHFISQLTRRPRYVHVSNTATSLWHAACNGNMIRFGVGIYGMNPSGKTLESPFDLQ 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++ E+ +   +    G  +SYG       D  I    IGYADGY   L G        
Sbjct: 242 PAMSLESELSFSKLVQKGRSISYGATYTAEEDEWIGTIPIGYADGYERRLQGF------- 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   I G    I+G+I MD  M  +  S  +  G  + + G      I + D+A  
Sbjct: 295 -----HVLIDGQFCEIVGRICMDQMMVRLPKSYPV--GTKVILAGKSGEKSITMTDIAEY 347

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +GT NY++      R  + YT
Sbjct: 348 AGTINYEITCGFTQRLPRIYT 368


>gi|255657417|ref|ZP_05402826.1| alanine racemase [Clostridium difficile QCD-23m63]
 gi|296449013|ref|ZP_06890803.1| alanine racemase [Clostridium difficile NAP08]
 gi|296879836|ref|ZP_06903809.1| alanine racemase [Clostridium difficile NAP07]
 gi|296262106|gb|EFH08911.1| alanine racemase [Clostridium difficile NAP08]
 gi|296429125|gb|EFH14999.1| alanine racemase [Clostridium difficile NAP07]
          Length = 385

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 156/376 (41%), Gaps = 24/376 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +I+L  L+ N +++  L   + +   V+K +AYG G  ++A  L    V    V  
Sbjct: 7   PTWAEINLDNLRFNLNNIKNLLEEDIKVCGVIKADAYGHGAVEVAKLLEKEKVDYLAVAR 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123
             EG++LR       I  L        +      +   + S+      +++    G    
Sbjct: 67  TAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKAC 126

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++D+G  R+G    +E++         +   L  + +H A AD+ S      Q   +
Sbjct: 127 VHVKIDSGMTRIGFQPNEESVQEIIELNKLEYIDLEGMFTHFATADEVSKEYTYKQANNY 186

Query: 183 RTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQT 234
           + +       G++     +++S+ I+  P+    + R GI LYG             ++ 
Sbjct: 187 KFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLELRP 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  +++I  I++   G  +SYG +   T    I    IGYADG+              +
Sbjct: 247 AMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIVTIPIGYADGFTR------------I 294

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTT 353
               K  IKG +  ++G+I MD  M  I   + I+VGD + +FG  ++  + +A   GT 
Sbjct: 295 QKNPKVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGEGEVTAERIAKDLGTI 354

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  I  R  + Y
Sbjct: 355 NYEVLCMISRRVDRVY 370


>gi|206560472|ref|YP_002231236.1| alanine racemase [Burkholderia cenocepacia J2315]
 gi|198036513|emb|CAR52410.1| alanine racemase, catabolic [Burkholderia cenocepacia J2315]
          Length = 356

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++  AVVK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG   ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYVPEKYRAAWERARACPGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
               +  G   SLA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAENIAGA-RSLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIAKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAGRVP 352


>gi|255038732|ref|YP_003089353.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Dyadobacter fermentans DSM
           18053]
 gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053]
          Length = 824

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/373 (27%), Positives = 170/373 (45%), Gaps = 25/373 (6%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +   A +G   +  A+VK  AYG G  ++A  L    V    V   +E
Sbjct: 462 LEINLDALVHNLNYYRARAGQGTKIMAMVKAFAYGSGSSEVAALLQYHRVDYLGVAYTDE 521

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS----VPQLTFYSKLMSCGVSHP 123
           GV LR       I V+    P  + +++   L P I S       + + ++      +  
Sbjct: 522 GVMLRQSGITLPIMVMNATLPTFD-LLWQYKLEPEIYSRRILTDWIEYITRKGEPTNTPS 580

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERF 182
             L++DTG +RLG    +              +++ + SHL  AD+   +  +  Q  +F
Sbjct: 581 VHLKLDTGMHRLGFVKDDYEWLVEQLRQNPALKVATLFSHLVGADEGVHNEFSRKQYAQF 640

Query: 183 RT------LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
                       YK I+  + +S+GI+  P Y   + R GI LYG          +Q+V 
Sbjct: 641 MEGAELIEATLGYKTIK-HILNSAGIVRFPEYRLDMVRLGIGLYGVEATGQDQRALQSVG 699

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  +  ++   +GE V Y  +  +  DS IA  AIGYADGY   L             
Sbjct: 700 TLKTIVSQVKYLSSGETVGYSRKGVVDHDSAIATLAIGYADGYDRGLGNGV--------- 750

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
            GK ++ G + P +G I MDMTM D+T++  +E GD + +FG ++ + ++A    T  Y+
Sbjct: 751 -GKVWVNGTLCPTIGNICMDMTMIDVTNA-QVEEGDEVIVFGKEVPITELAKTINTIPYE 808

Query: 357 LLVRIGTRYAKFY 369
           +L  IG R  + +
Sbjct: 809 ILTGIGDRVKRVF 821


>gi|77163759|ref|YP_342284.1| alanine racemase region [Nitrosococcus oceani ATCC 19707]
 gi|254435880|ref|ZP_05049387.1| alanine racemase [Nitrosococcus oceani AFC27]
 gi|123595159|sp|Q3JEJ2|ALR_NITOC RecName: Full=Alanine racemase
 gi|76882073|gb|ABA56754.1| alanine racemase [Nitrosococcus oceani ATCC 19707]
 gi|207088991|gb|EDZ66263.1| alanine racemase [Nitrosococcus oceani AFC27]
          Length = 356

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 171/367 (46%), Gaps = 21/367 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           F +  ID +AL++N   +  L+  ++  AVVK + YG G  ++A  L       F V  +
Sbjct: 3   FPQAIIDASALRHNLQRVRELAPRSQIMAVVKADGYGHGLTRVADVLVA--ADAFAVARL 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE   LR    +  + +L GI    Q ++     L  V+    QL    ++       P 
Sbjct: 61  EEATALRQAGHRCPVVLLGGISDKEQLQLAAAHRLTLVVHEFAQLDLLERVR-ITSPLPV 119

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLERFR 183
            ++ DTG +RLG   Q              +  +  ++SHLA AD+    +  +QL+ F 
Sbjct: 120 WVKADTGMHRLGFPPQVVAKAIARLRCCPAVASVVGLMSHLASADESEDFLTPIQLQTFE 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
            + +   G+  S+A+S+ +++ P  HF   RPG+ LYG +        +  +++V+T + 
Sbjct: 180 GIAA--PGLLRSMANSAAVMVYPYAHFDWVRPGLMLYGASPFAHGTGAAVGLKSVMTLQT 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I I     G+ + YG          + VAA+GY DGYP                G   
Sbjct: 238 RLIAIHHLRPGDSIGYGATWVCPEAMTVGVAALGYGDGYPRHA-----------VSGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  VP++G+++MDM   D+      +VGD +  +GP++ +++VA  + T  Y+LL +
Sbjct: 287 LVNGRPVPLVGRVSMDMITLDLRTQPKAKVGDPVIAWGPNLPVEEVARHATTIPYELLCQ 346

Query: 361 IGTRYAK 367
           +  R  +
Sbjct: 347 VTGRVPR 353


>gi|311896524|dbj|BAJ28932.1| putative alanine racemase [Kitasatospora setae KM-6054]
          Length = 394

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 163/385 (42%), Gaps = 32/385 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL AL++N  ++ A +  A   AVVK +AYG G  + A     AG       + 
Sbjct: 17  RAEATVDLAALRDNLAALRARTSGAELMAVVKADAYGHGALRCAREAVAAGAGWLGTATP 76

Query: 66  EEGVKLRLYTP---QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVS 121
           EE + LR       QARI        G        ++   IS         + +   GV 
Sbjct: 77  EEALALRAAGIGPEQARILCWLWTPGGPWARALRESVDISISGQWALDELLAAVRETGVP 136

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L+ DTG  R G    +  D   N   +    L ++  + SH A AD+P       Q
Sbjct: 137 ARVHLKADTGLGRNGCQPHDWPDLVENAVKAQAAGLLRVVGVWSHFAAADEPGHPSIQAQ 196

Query: 179 LERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229
           L+ F   ++  +  G++     LA+S   LL P  H+ L RPG+++YG +   +      
Sbjct: 197 LDSFAQALAFAERTGVDPEVRHLANSPATLLLPQSHYDLVRPGLAMYGLSPVPDVGAPAD 256

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++  AR+ L+++   G  +SYG     +  + + +  +GYADG P   S     
Sbjct: 257 FGLRPVMSLAARLALVKRVPGGHGISYGHHYTTSGPTTLGLVPLGYADGVPRHASNT--- 313

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G   I      + G++ MD  + D+   L  +VG+ + +FG     +   +D
Sbjct: 314 --------GPVQIGSSWYRVAGRVAMDQFVVDLGGDLP-DVGEEVLLFGSGERGEPTAED 364

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
            A A GT  Y+++ RIG R  + Y 
Sbjct: 365 WARACGTIAYEIITRIGGRVPRRYV 389


>gi|71901892|ref|ZP_00683951.1| Alanine racemase [Xylella fastidiosa Ann-1]
 gi|71728346|gb|EAO30518.1| Alanine racemase [Xylella fastidiosa Ann-1]
          Length = 369

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 175/370 (47%), Gaps = 21/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                 IDL AL++N+     L G  +  AVVK +AYG G  + A AL  A V  F V  
Sbjct: 9   RPAHAVIDLDALRHNYRFARRLGGG-KALAVVKADAYGHGAVRCAQAL-EAEVDGFAVAC 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    QA I +L G    +E ++I   NL  VI+S  Q+   +          
Sbjct: 67  IEEALELRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAF-HSPSPIG 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGL  +E  D   +  +       ++++HLA AD+  +   + Q   F 
Sbjct: 126 VWLKLDSGMHRLGLEPKEFRDAWMSLHSLPQVGEVVLMTHLARADELDNPRTNEQASVFA 185

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
                     AS+ +SSG+L     +    RPG+ LYG      +S     P++ V+   
Sbjct: 186 HASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVY 244

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R+  AGE V YG      R + + V A+GYADGYP                G  
Sbjct: 245 SKLIAVRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTP 293

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G + P++G+++MDM   D+TD    +VG  +Q++G    + ++A     + Y LL 
Sbjct: 294 LLVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLS 353

Query: 360 RIGTRYAKFY 369
            +  R  ++Y
Sbjct: 354 GL-KRVRRYY 362


>gi|47094893|ref|ZP_00232507.1| alanine racemase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898941|ref|ZP_05258865.1| hypothetical protein LmonJ_03970 [Listeria monocytogenes J0161]
 gi|254911571|ref|ZP_05261583.1| alanine racemase [Listeria monocytogenes J2818]
 gi|254935897|ref|ZP_05267594.1| alanine racemase [Listeria monocytogenes F6900]
 gi|47016775|gb|EAL07694.1| alanine racemase [Listeria monocytogenes str. 1/2a F6854]
 gi|258608485|gb|EEW21093.1| alanine racemase [Listeria monocytogenes F6900]
 gi|293589517|gb|EFF97851.1| alanine racemase [Listeria monocytogenes J2818]
          Length = 368

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 158/379 (41%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  +    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +        + + ++   +
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEAT 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G + PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNVITADDAAQYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|332759341|gb|EGJ89649.1| alanine racemase [Shigella flexneri 2747-71]
 gi|332767413|gb|EGJ97607.1| alanine racemase [Shigella flexneri 2930-71]
          Length = 356

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQSDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTACDEQRIGIVAAGYADGYPRHA-----------PTGA 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|307707478|ref|ZP_07643960.1| alanine racemase [Streptococcus mitis NCTC 12261]
 gi|307616430|gb|EFN95621.1| alanine racemase [Streptococcus mitis NCTC 12261]
          Length = 367

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A  + +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPEGTLKFAVVKANAYGHGAVAVATTIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      RI +L         +  + ++   ++ +  +       +     
Sbjct: 65  SNIDEAIELRQAGLSKRILILGVSEIEVVALAKEYDITLTVAGLEWIQALLDKEADLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREAHEAEQAQDLLQQHGARVEGIFTHFATADEKSDDYFNTQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  KG+      ++S+  L      F   R G ++YG       ++  + ++  +T
Sbjct: 185 KTILAGMKGLPELIHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVSAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFA---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|229003241|ref|ZP_04161078.1| Alanine racemase [Bacillus mycoides Rock1-4]
 gi|228758011|gb|EEM07219.1| Alanine racemase [Bacillus mycoides Rock1-4]
          Length = 389

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 157/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56
           M  + F R   ++++L A+ NN   +  +   +    AVVK NAYG     +A     AG
Sbjct: 1   MGKSSFYRDTWVEVNLDAIYNNVTHIKEIIPESVEIFAVVKANAYGHDYVLVARTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I V+    P    +  + ++   +     +    ++ 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVIGPSPPRDVNVAAENDVALTVFQKEWVEEAVEIW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +  +    +L  I +H A AD+  +   
Sbjct: 121 DSPFPMKFHINFDSGMGRIGIRERKELKEFLRSLEDAPFLELEGIYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  +      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKAFGVNPTFIHTANSAATMRFDGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++    +  I++ + G+ +SY    +   +  IA   IGYADG+   L G 
Sbjct: 241 YLPIKLEPALSLHTTVEHIKRVIKGDRISYNVTYRTKTEEWIATVPIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  ++G  VPI+G+ITMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVQGKRVPIVGRITMDQCMLHLP--CEVPLGTKVTLIGQQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  S T NY+++  I  R  + +
Sbjct: 347 ATEVAEYSNTINYEIIATISFRVPRVF 373


>gi|30249388|ref|NP_841458.1| alanine racemase [Nitrosomonas europaea ATCC 19718]
 gi|81838719|sp|Q82UR4|ALR_NITEU RecName: Full=Alanine racemase
 gi|30138751|emb|CAD85328.1| Alanine racemase [Nitrosomonas europaea ATCC 19718]
          Length = 362

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/368 (28%), Positives = 165/368 (44%), Gaps = 20/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +R  I+  AL++N   +      AR  AVVK +AYG G  ++A AL    V  F V 
Sbjct: 2   SRPIRAFINCAALRHNLAVVRRHVHQARIMAVVKADAYGHGLLRVARALDA--VDGFAVL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +E  ++LR       I +L G     + + I    L  VI    QL+        G   
Sbjct: 60  ELEAAIQLREAGFSQLILLLEGFFSIEEIEAINHYRLSTVIHCHEQLSMLLAHKKTGKP- 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLER 181
              L+++TG NRLG   +E     +            +++H ACADD   +     QL  
Sbjct: 119 DIFLKINTGMNRLGFRPEEGNSVLNRLRQWHTDISITLMTHFACADDLLEADHVDQQLGS 178

Query: 182 FRTLISHYKG-IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237
           F  L    +G I  +LA+S+ IL  P  H    RPGI LYG +   +K+     +Q V+T
Sbjct: 179 FARLEEKREGCIPRTLANSAAILRYPGTHADWVRPGIILYGASPLPDKTGIELGLQPVMT 238

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +RII ++     + + YGGQ    +   + V A GYADGYP                G
Sbjct: 239 LTSRIIAVQHLDFSDRLGYGGQFVADQPMRVGVVAAGYADGYPRHA-----------PTG 287

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G    ++G+++MDM   D++       G  + ++G  + +++VA ++ T +Y+L
Sbjct: 288 TPVLVNGRRTRLIGRVSMDMLTVDLSGINEAGAGSLVTLWGEGLPVEEVARSAQTISYEL 347

Query: 358 LVRIGTRY 365
           L  +  R 
Sbjct: 348 LAALSPRV 355


>gi|184154687|ref|YP_001843027.1| alanine racemase [Lactobacillus fermentum IFO 3956]
 gi|227514327|ref|ZP_03944376.1| alanine racemase [Lactobacillus fermentum ATCC 14931]
 gi|226711050|sp|B2GA65|ALR_LACF3 RecName: Full=Alanine racemase
 gi|183226031|dbj|BAG26547.1| alanine racemase [Lactobacillus fermentum IFO 3956]
 gi|227087299|gb|EEI22611.1| alanine racemase [Lactobacillus fermentum ATCC 14931]
 gi|299782815|gb|ADJ40813.1| Alanine racemase [Lactobacillus fermentum CECT 5716]
          Length = 373

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/375 (26%), Positives = 151/375 (40%), Gaps = 28/375 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL AL  N       L+  +R  AVVK NAYG G   +A AL  AGV+ F V  ++E
Sbjct: 11  LVVDLKALGANVQRQREQLAPGSRILAVVKANAYGNGMVPVASALARAGVEGFCVALLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS---CGVSHPY 124
            ++LR    Q  + VL         +     +   + S+  L  Y +L            
Sbjct: 71  AIELRDSGIQELVLVLGITPVEYAPLAAAQGISLTVGSLEWLKNYQRLAKEEGIKQPLKV 130

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L +DTG  R+G +  E              +   I +H A AD+  +     Q  RF  
Sbjct: 131 HLALDTGMGRIGFTTPEDFKEALQLVAAPCFEFEGIFTHFATADEEDATYFERQRARFDD 190

Query: 185 LISHYKGIEA--SLASSSGILLGPNYHF-QLTRPGISLYGGTDK---INKSHPMQTVVTA 238
            ++          +A+S+  L           R GIS+YG       I +S P++ V + 
Sbjct: 191 FMAVVTKRPPFVHVANSATGLWHQKSIVANTIRMGISMYGANPSGVGIKESFPLEPVTSL 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
                 +++  AGE VSYG       D  +A   +GYADGYP  + G             
Sbjct: 251 VTHATYVKQLKAGESVSYGATYTAKEDEWVATLPVGYADGYPRRMQGF------------ 298

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354
              + G    +LG++ MD  M  +     +  G    + G     +I + DVA  + T N
Sbjct: 299 YVLVDGQRCEVLGRVCMDQMMVRLPKEYPV--GTEAVLMGRSLDQEITVTDVAEYAHTIN 356

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  +G R  + Y
Sbjct: 357 YEILTGMGARLHRRY 371


>gi|284801216|ref|YP_003413081.1| hypothetical protein LM5578_0966 [Listeria monocytogenes 08-5578]
 gi|284994358|ref|YP_003416126.1| hypothetical protein LM5923_0920 [Listeria monocytogenes 08-5923]
 gi|284056778|gb|ADB67719.1| hypothetical protein LM5578_0966 [Listeria monocytogenes 08-5578]
 gi|284059825|gb|ADB70764.1| hypothetical protein LM5923_0920 [Listeria monocytogenes 08-5923]
          Length = 368

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 157/379 (41%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  +    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +        + + ++   +
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEAT 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G   PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|224499424|ref|ZP_03667773.1| hypothetical protein LmonF1_06877 [Listeria monocytogenes Finland
           1988]
          Length = 368

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 157/379 (41%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  +    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +        + + ++   +
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEAT 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELTPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G   PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|300723428|ref|YP_003712733.1| alanine racemase [Xenorhabdus nematophila ATCC 19061]
 gi|297629950|emb|CBJ90570.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus nematophila
           ATCC 19061]
          Length = 355

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 91/367 (24%), Positives = 153/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I L A ++N   +    G ++  +VVK NAYG G ++I  +L       F +  
Sbjct: 3   RPILATIHLNAFRHNLAVIRQRIGKSKIWSVVKANAYGHGLDRIWQSLMQ--TDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    Q  I +L G     +  I +  +L   + S  QL    K+ +      
Sbjct: 61  MNEAIYLREQGWQGPILLLEGFFKSTDLQIINTYSLTTAVHSYWQLEEIEKI-TLDKPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + +E       +   K      ++SH   +   +      QL    
Sbjct: 120 IYLKLNSGMNRLGFTPKEYPQAASMAAGIKNINSVTLMSHFPNS--DNEIGVREQLSVIE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
            L      +   LA+S  +L  P  H    RPGI LYG +            ++  +T +
Sbjct: 178 RL--QMNSLPHCLANSGAVLWHPETHQDWVRPGIILYGASPSGKWCDIADVGLKATMTLQ 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II +     GE + YG +    +   +   A GYADGYP                G  
Sbjct: 236 SEIIAVHTLSKGEKIGYGSRYTTQKTMRVGTVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    +LG ++MDM   D+T      +G  ++++G D+ +D+VA ++GT  Y+LL 
Sbjct: 285 IMVDGVRTQLLGAVSMDMLTVDLTPCPQANIGSVVELWGEDLPVDEVAESAGTIGYELLC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALTRRVP 351


>gi|304379251|ref|ZP_07361990.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|304342110|gb|EFM08010.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|320140759|gb|EFW32611.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143734|gb|EFW35511.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 390

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 168/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 10  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 70  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 129

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 130 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 185

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 186 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 245

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 246 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 304

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 305 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 351

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            VA    T NY++L  +  R  + Y
Sbjct: 352 VVAEKQHTINYEVLCNLSRRLPRIY 376


>gi|329296350|ref|ZP_08253686.1| alanine racemase [Plautia stali symbiont]
          Length = 356

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/363 (27%), Positives = 162/363 (44%), Gaps = 22/363 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             I+  AL++N   +   + +AR  +VVK NAYG G  ++  +L       F + ++EE 
Sbjct: 7   ATINQQALRHNLAIVRQAAPHARVWSVVKANAYGHGIARVWQSLAE--TDGFALLNMEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR    +  I +L G     +  + D   L   + S  Q+   +K           L+
Sbjct: 65  ILLREQGWKKLILLLEGFFHADDLTLIDRYRLTTSVHSNWQIQALAKAQ-LSAPVDVYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG   ++A    H            +++H A A++P   V  +Q  R      
Sbjct: 124 INSGMNRLGFRPEQAQAAWHKLRALPSVGEMTLMAHFADAENPQGLVEPMQ--RVEQAAE 181

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARII 243
                  SLA+S+  L  P  HF   RPGI LYG +   +     S  +Q V+T  + II
Sbjct: 182 GL-NCPRSLANSATTLWHPQAHFDWVRPGIILYGASPSGDWQDIASTGLQPVMTLSSEII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +++  AGE V YG +        I + A GYADGYP                G    + 
Sbjct: 241 GVQQLSAGEGVGYGYRYHAAALQRIGIVACGYADGYPRHA-----------PTGTPVSVD 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G     LG I+MDM M D+       +G  ++++G ++K+D+VA A+GT  Y+L+  +  
Sbjct: 290 GIRTQTLGAISMDMMMIDLEPCPQAGIGSRVELWGNEVKIDEVAKAAGTVGYELMCALAP 349

Query: 364 RYA 366
           R  
Sbjct: 350 RVP 352


>gi|205352531|ref|YP_002226332.1| D-amino acid dehydrogenase-Alanine racemase fusion protein
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205272312|emb|CAR37191.1| D-amino acid dehydrogenase-Alanine racemase fusion protein
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326627589|gb|EGE33932.1| D-amino acid dehydrogenase-Alanine racemase fusion protein
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 793

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 440 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 496

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 497 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 555

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 556 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 610

Query: 183 RTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++ S  L++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 611 RRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 670

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 671 TLSSEIIGVQTLNAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 719

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 720 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 779

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 780 LLCAVAPRVP 789


>gi|209548649|ref|YP_002280566.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534405|gb|ACI54340.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 388

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 180/375 (48%), Positives = 238/375 (63%), Gaps = 20/375 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNA---------YGLGCEKIAPALYNAGV 57
           LRL +DLTAL  NW  M   SG AR                  YG+G E    ALY AG 
Sbjct: 19  LRLTVDLTALTENWRDMAQRSGAAR---------AAAVVKADAYGMGIEDAGEALYMAGA 69

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           +DFFV +V+EGV LRLY P ARIFVL GI PG E+  F+ +L+PVISS  QL F+  +++
Sbjct: 70  RDFFVATVDEGVTLRLYAPDARIFVLSGIWPGTERRFFENDLVPVISSDEQLAFWMAVLA 129

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
               +P AL VDTGFNRLGL + +A+    +          L++SHLAC D+PS  +N  
Sbjct: 130 DYGDYPCALHVDTGFNRLGLHMDDAIALADDVSRPASFAPVLVMSHLACGDEPSHAMNRQ 189

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           QLE FR + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG      ++PM+ V T
Sbjct: 190 QLESFRRVSAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGLANPMRPVAT 249

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
           AEARII +R   AGE VSYG   +L R S +A+A+ GYADGY   LS        +V  G
Sbjct: 250 AEARIIQVRSVEAGETVSYGRALQLRRKSRLAIASAGYADGYMRGLSSGGVPLRQAVPQG 309

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G+GFI G+ VP+ G+ITMD+T+FDITD     +  GDY+++FG ++ LDDVA A+GT  Y
Sbjct: 310 GQGFIAGHKVPVAGRITMDLTIFDITDLPDNAVRAGDYVELFGKNMPLDDVARAAGTIGY 369

Query: 356 DLLVRIGTRYAKFYT 370
           ++L  +G R+ + Y 
Sbjct: 370 EILTSMGLRHERRYV 384


>gi|308198664|pdb|3OO2|A Chain A, 2.37 Angstrom Resolution Crystal Structure Of An Alanine
           Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus
           Col
 gi|308198665|pdb|3OO2|B Chain B, 2.37 Angstrom Resolution Crystal Structure Of An Alanine
           Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus
           Col
          Length = 385

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 168/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 5   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 64

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 65  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 124

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 125 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 180

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 181 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 241 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 299

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 300 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 346

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            VA    T NY++L  +  R  + Y
Sbjct: 347 VVAEKQHTINYEVLCNLSRRLPRIY 371


>gi|297210110|ref|ZP_06926503.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300910473|ref|ZP_07127925.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70]
 gi|296885310|gb|EFH24250.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300888315|gb|EFK83506.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 390

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 168/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 10  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 70  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 129

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 130 QEKKLWLHIKLDTGMGRLGIKDTNTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 185

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 186 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 245

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 246 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 304

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 305 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 351

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            VA    T NY++L  +  R  + Y
Sbjct: 352 VVAEKQHTINYEVLCNLSRRLPRIY 376


>gi|161524411|ref|YP_001579423.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|189350834|ref|YP_001946462.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|221198343|ref|ZP_03571389.1| alanine racemase [Burkholderia multivorans CGD2M]
 gi|221208282|ref|ZP_03581286.1| alanine racemase [Burkholderia multivorans CGD2]
 gi|221215437|ref|ZP_03588401.1| alanine racemase [Burkholderia multivorans CGD1]
 gi|160341840|gb|ABX14926.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|189334856|dbj|BAG43926.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|221164621|gb|EED97103.1| alanine racemase [Burkholderia multivorans CGD1]
 gi|221171930|gb|EEE04373.1| alanine racemase [Burkholderia multivorans CGD2]
 gi|221182275|gb|EEE14676.1| alanine racemase [Burkholderia multivorans CGD2M]
          Length = 356

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 155/367 (42%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++  AVVK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRYAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYAPEKYRAAWERARACPSIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
              ++  G    LA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAANIAGARC-LANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLS 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQSIGKGQAIGYGSTFSAPAPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALSIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAARVP 352


>gi|57650742|ref|YP_186876.1| alanine racemase [Staphylococcus aureus subsp. aureus COL]
 gi|87161019|ref|YP_494673.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195971|ref|YP_500784.1| alanine racemase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151222187|ref|YP_001333009.1| alanine racemase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510282|ref|YP_001575941.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141592|ref|ZP_03566085.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258453219|ref|ZP_05701210.1| alanine racemase [Staphylococcus aureus A5948]
 gi|262049241|ref|ZP_06022116.1| alanine racemase [Staphylococcus aureus D30]
 gi|262052487|ref|ZP_06024685.1| alanine racemase [Staphylococcus aureus 930918-3]
 gi|282923060|ref|ZP_06330745.1| alanine racemase [Staphylococcus aureus A9765]
 gi|284025106|ref|ZP_06379504.1| alanine racemase [Staphylococcus aureus subsp. aureus 132]
 gi|294850555|ref|ZP_06791282.1| alanine racemase [Staphylococcus aureus A9754]
 gi|6647411|sp|Q9ZAH5|ALR1_STAA8 RecName: Full=Alanine racemase 1
 gi|81694088|sp|Q5HED1|ALR1_STAAC RecName: Full=Alanine racemase 1
 gi|123484988|sp|Q2FF55|ALR_STAA3 RecName: Full=Alanine racemase
 gi|172048975|sp|A6QIR5|ALR_STAAE RecName: Full=Alanine racemase
 gi|3850851|emb|CAA76221.1| alr protein [Staphylococcus aureus]
 gi|57284928|gb|AAW37022.1| alanine racemase [Staphylococcus aureus subsp. aureus COL]
 gi|87126993|gb|ABD21507.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203529|gb|ABD31339.1| alanine racemase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374987|dbj|BAF68247.1| alanine racemase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160369091|gb|ABX30062.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859165|gb|EEV82022.1| alanine racemase [Staphylococcus aureus A5948]
 gi|259159608|gb|EEW44654.1| alanine racemase [Staphylococcus aureus 930918-3]
 gi|259162606|gb|EEW47173.1| alanine racemase [Staphylococcus aureus D30]
 gi|269941671|emb|CBI50078.1| alanine racemase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593251|gb|EFB98248.1| alanine racemase [Staphylococcus aureus A9765]
 gi|294822575|gb|EFG39017.1| alanine racemase [Staphylococcus aureus A9754]
 gi|315196997|gb|EFU27339.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS01]
 gi|329314756|gb|AEB89169.1| Alanine racemase 1 [Staphylococcus aureus subsp. aureus T0131]
 gi|329724022|gb|EGG60546.1| alanine racemase [Staphylococcus aureus subsp. aureus 21189]
 gi|329729286|gb|EGG65694.1| alanine racemase [Staphylococcus aureus subsp. aureus 21193]
          Length = 382

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 168/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 122 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 177

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 178 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 238 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 297 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            VA    T NY++L  +  R  + Y
Sbjct: 344 VVAEKQHTINYEVLCNLSRRLPRIY 368


>gi|197123899|ref|YP_002135850.1| alanine racemase [Anaeromyxobacter sp. K]
 gi|196173748|gb|ACG74721.1| alanine racemase [Anaeromyxobacter sp. K]
          Length = 395

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 155/373 (41%), Gaps = 19/373 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL AL +N   + A +  AR  AVVK NAYG G      A   AG     V  
Sbjct: 14  RPVWAEIDLDALAHNVRLLAARASPARLYAVVKANAYGHGAVACGRAALEAGAHGLAVVC 73

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123
           V+E  +LR    +A + V+          +    L P + ++  +    ++    G   P
Sbjct: 74  VDEAEELRRAGVEAPLLVIGNTPASDAARVVALRLRPAVGAMDLVEALSAEARRRGAEVP 133

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NR GLS    +     +      ++  + +H A A++        Q E  R
Sbjct: 134 IHLELESGLNRHGLSPDALVALAERARALPGLRVEGLFTHFAAAEEGDQRFTRAQFEVLR 193

Query: 184 TLISHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEA 240
                   + E   A+S+ ILL      +  R G+SLYG            ++ V++  A
Sbjct: 194 ETSRRLPWVPERHCAASASILLDHEMALEAVRGGLSLYGYRPAPWCGTDADLRPVMSLRA 253

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  +     G  V YG      R + +A+   GYADGY  +                + 
Sbjct: 254 RVARVSDVDRGATVGYGRTWAANRPTRVALVMCGYADGYRRSFGNR-----------TQV 302

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            + G   P++G++ MDM M D+T    +  GD + + G D    +  DD+A  + T +++
Sbjct: 303 LVHGRRAPVVGRVAMDMCMVDVTAVPGVAAGDVVTLIGRDGDERVDADDLATIADTISWE 362

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 363 ILAGISARVPRLY 375


>gi|307707071|ref|ZP_07643868.1| alanine racemase [Streptococcus mitis SK321]
 gi|307617597|gb|EFN96767.1| alanine racemase [Streptococcus mitis SK321]
          Length = 367

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 159/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKFAVVKANAYGHGAVAVATAIQDE-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      RI +L         +  + ++   ++ +  +       +     
Sbjct: 65  SNIDEAIELRQAGLSKRILILGVSEIEAVSLAKEYDITLTVAGLEWIQVLLDKEADLAGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +   +   +    +  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREAGEAEQAQDLLKEHGAGVEGIFTHFATADEESDTYFNEQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  KG+      ++S+  L      F   R G ++YG       ++  + ++  +T
Sbjct: 185 KTILASMKGLPELIHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESAMVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|283785526|ref|YP_003365391.1| alanine racemase, catabolic [Citrobacter rodentium ICC168]
 gi|282948980|emb|CBG88583.1| alanine racemase, catabolic [Citrobacter rodentium ICC168]
          Length = 356

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/367 (26%), Positives = 161/367 (43%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  +DL ALK N + +   + +AR  +VVK NAYG G ++I  AL   G   F + +
Sbjct: 3   RPIQASLDLQALKQNLNIVRQAAPDARVWSVVKANAYGHGIDRIWNAL--GGTDGFALLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G    ++  ++D   L   + S  QL              
Sbjct: 61  LEEAITLRERGWKGPILMLEGFFHAEDLAVYDTWRLTTCVHSNWQLKAIQNA-KLNAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++V++G NRLG   +                   ++SH A A+ P     ++   R  
Sbjct: 120 IYVKVNSGMNRLGFLPERLQTVWQQLRAMPNVGEMTLMSHFATAEHPGGIGKAM--ARIG 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                 +    SLA+S+  L  P  H    RPGI LYG +         +  ++ V+T  
Sbjct: 178 LATEGLEC-RRSLANSAATLWHPEAHGDWVRPGIILYGASPSGQWRDIANTGLKPVMTLN 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   AG+ V YG +     +  I + A GYADGYP                G  
Sbjct: 237 SEIIGVQTLQAGDRVGYGERFTAQGEQRIGIVAAGYADGYPRHA-----------PTGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+ 
Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 ALALRVP 352


>gi|110633340|ref|YP_673548.1| alanine racemase [Mesorhizobium sp. BNC1]
 gi|110284324|gb|ABG62383.1| alanine racemase [Chelativorans sp. BNC1]
          Length = 389

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/367 (41%), Positives = 221/367 (60%), Gaps = 5/367 (1%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL +DL+AL  N+  +   S  A  AAV+K +AYGLG + +  AL+ AG + FFV   +E
Sbjct: 20  RLTVDLSALVANYQLLARRSAPAGAAAVLKADAYGLGLKPVGSALWAAGCRRFFVALPQE 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           G++LR   P+A IFVL G+   +    + +  LIPV++S   ++ +     +   S P A
Sbjct: 80  GIELRAILPEAEIFVLTGLFAVESAAAYREARLIPVLNSQSDISIWEAHGWNDQRSRPCA 139

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + VDTG NRLGL+ + A      +         L++SHLACAD P   +N  QLE F+ +
Sbjct: 140 VHVDTGMNRLGLTPERARSLAEENALTGALTPILLMSHLACADTPDHPLNRRQLELFQAV 199

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            + +   E+SL +S+GI LG ++   LTRPGI+LYGG      ++PM+ V T EAR++ +
Sbjct: 200 RTLFPQSESSLCNSAGIFLGSDFLCDLTRPGIALYGGAPVKGIANPMRAVATVEARVVQV 259

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE VSYG      RDS+IAV + GYADGY L  SG       +V    +GFI G 
Sbjct: 260 RHVRAGETVSYGATPLA-RDSVIAVCSAGYADGYHLAGSGDRVPLRRAVRKAAEGFIHGR 318

Query: 306 MVPILGKITMDMTMFDITDS--LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VP++G++TMD+T+FD+T+     I  GD+I++FGP++ +D+VA A+GT  Y+LL  +G 
Sbjct: 319 RVPVVGRVTMDLTLFDVTEVGMDVIAPGDHIELFGPNMPIDEVAEAAGTIAYELLTSLGR 378

Query: 364 RYAKFYT 370
           RY + Y 
Sbjct: 379 RYYREYV 385


>gi|15925060|ref|NP_372594.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927645|ref|NP_375178.1| alanine racemase [Staphylococcus aureus subsp. aureus N315]
 gi|21283723|ref|NP_646811.1| alanine racemase [Staphylococcus aureus subsp. aureus MW2]
 gi|49486864|ref|YP_044085.1| alanine racemase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|148268522|ref|YP_001247465.1| alanine racemase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394586|ref|YP_001317261.1| alanine racemase [Staphylococcus aureus subsp. aureus JH1]
 gi|156980386|ref|YP_001442645.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315700|ref|ZP_04838913.1| alanine racemase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006859|ref|ZP_05145460.2| alanine racemase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794520|ref|ZP_05643499.1| alanine racemase [Staphylococcus aureus A9781]
 gi|258411250|ref|ZP_05681528.1| alanine racemase [Staphylococcus aureus A9763]
 gi|258419766|ref|ZP_05682732.1| alanine racemase [Staphylococcus aureus A9719]
 gi|258438073|ref|ZP_05689452.1| alanine racemase 1 [Staphylococcus aureus A9299]
 gi|258441321|ref|ZP_05690806.1| alanine racemase 1 [Staphylococcus aureus A8115]
 gi|258446985|ref|ZP_05695137.1| alanine racemase [Staphylococcus aureus A6300]
 gi|258449782|ref|ZP_05697882.1| alanine racemase [Staphylococcus aureus A6224]
 gi|258453480|ref|ZP_05701459.1| alanine racemase 1 [Staphylococcus aureus A5937]
 gi|269203705|ref|YP_003282974.1| alanine racemase [Staphylococcus aureus subsp. aureus ED98]
 gi|282895219|ref|ZP_06303435.1| alanine racemase [Staphylococcus aureus A8117]
 gi|282929298|ref|ZP_06336869.1| alanine racemase [Staphylococcus aureus A10102]
 gi|295407616|ref|ZP_06817407.1| alanine racemase [Staphylococcus aureus A8819]
 gi|296275701|ref|ZP_06858208.1| alanine racemase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246613|ref|ZP_06930444.1| alanine racemase [Staphylococcus aureus A8796]
 gi|54036714|sp|P63480|ALR1_STAAN RecName: Full=Alanine racemase 1
 gi|54036715|sp|P63481|ALR1_STAAW RecName: Full=Alanine racemase 1
 gi|54040680|sp|P63479|ALR1_STAAM RecName: Full=Alanine racemase 1
 gi|60389600|sp|Q6G7N9|ALR1_STAAS RecName: Full=Alanine racemase 1
 gi|13701865|dbj|BAB43157.1| alanine racemase [Staphylococcus aureus subsp. aureus N315]
 gi|14247843|dbj|BAB58232.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21205165|dbj|BAB95859.1| alanine racemase [Staphylococcus aureus subsp. aureus MW2]
 gi|49245307|emb|CAG43782.1| alanine racemase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|147741591|gb|ABQ49889.1| alanine racemase [Staphylococcus aureus subsp. aureus JH9]
 gi|149947038|gb|ABR52974.1| alanine racemase [Staphylococcus aureus subsp. aureus JH1]
 gi|156722521|dbj|BAF78938.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788492|gb|EEV26832.1| alanine racemase [Staphylococcus aureus A9781]
 gi|257840005|gb|EEV64471.1| alanine racemase [Staphylococcus aureus A9763]
 gi|257844248|gb|EEV68631.1| alanine racemase [Staphylococcus aureus A9719]
 gi|257848490|gb|EEV72480.1| alanine racemase 1 [Staphylococcus aureus A9299]
 gi|257852365|gb|EEV76290.1| alanine racemase 1 [Staphylococcus aureus A8115]
 gi|257854218|gb|EEV77169.1| alanine racemase [Staphylococcus aureus A6300]
 gi|257856956|gb|EEV79857.1| alanine racemase [Staphylococcus aureus A6224]
 gi|257864352|gb|EEV87101.1| alanine racemase 1 [Staphylococcus aureus A5937]
 gi|262075995|gb|ACY11968.1| alanine racemase [Staphylococcus aureus subsp. aureus ED98]
 gi|282589108|gb|EFB94207.1| alanine racemase [Staphylococcus aureus A10102]
 gi|282762409|gb|EFC02553.1| alanine racemase [Staphylococcus aureus A8117]
 gi|285817735|gb|ADC38222.1| Alanine racemase [Staphylococcus aureus 04-02981]
 gi|294967514|gb|EFG43552.1| alanine racemase [Staphylococcus aureus A8819]
 gi|297176513|gb|EFH35779.1| alanine racemase [Staphylococcus aureus A8796]
 gi|312830422|emb|CBX35264.1| alanine racemase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128410|gb|EFT84419.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727774|gb|EGG64226.1| alanine racemase [Staphylococcus aureus subsp. aureus 21172]
          Length = 382

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 168/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 122 QEKKLWLHIKLDTGMGRLGIKDTNTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 177

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 178 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 238 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 297 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            VA    T NY++L  +  R  + Y
Sbjct: 344 VVAEKQHTINYEVLCNLSRRLPRIY 368


>gi|116072169|ref|ZP_01469437.1| alanine racemase [Synechococcus sp. BL107]
 gi|116065792|gb|EAU71550.1| alanine racemase [Synechococcus sp. BL107]
          Length = 375

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 180/380 (47%), Gaps = 24/380 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           +  +   +++   A+K N  ++   L+      AVVK + YG G   +A A  + G    
Sbjct: 5   NPRQRAWVEVSPAAIKANAGALCQHLTPGTELMAVVKADGYGHGAVTVANAALDGGAASL 64

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
            V +++EG++LR    +A I +L  +  P   +   +  L+P +SS+        L    
Sbjct: 65  GVATLQEGLELRQAGLKAPILLLSNLCDPEDLRTCLEWQLMPTLSSLADAKLCHALAEDS 124

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G      L++DTG +RLG +L +  + T    + K   L  I SHLACADD +  V   Q
Sbjct: 125 GRRFQVQLKIDTGMSRLGCALDDGAETTQAIQHLKNLDLKGIYSHLACADDRNITVTQQQ 184

Query: 179 LERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PM 232
            +RF+++I        G+   LA+S+G LL PN H+ L R G++LYG     + S   P+
Sbjct: 185 RQRFQSVIETLPQQGTGLCRHLANSAGTLLEPNLHYDLVRVGLALYGHAPADHLSDIVPL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           ++ +   A++ LIR+  AG  VSYG Q        +AV AIGYADG   +LSG       
Sbjct: 245 RSALAVRAKVTLIREIKAGTGVSYGHQYISPNSRRLAVVAIGYADGVLRSLSGQI----- 299

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVAL 348
                 +   +   +P +G ITMD  + D TD+  +  G  + + G D  ++    + + 
Sbjct: 300 ------QVLHRDKRLPQVGAITMDQLLIDATDAPELHPGSIVTLLGRDQNVEISPQNWSD 353

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
              +  +++L     R  + 
Sbjct: 354 RCQSIPWEILCGFKHRLPRV 373


>gi|260663736|ref|ZP_05864624.1| alanine racemase [Lactobacillus fermentum 28-3-CHN]
 gi|260551787|gb|EEX24903.1| alanine racemase [Lactobacillus fermentum 28-3-CHN]
          Length = 373

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/375 (26%), Positives = 151/375 (40%), Gaps = 28/375 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL AL  N       L+  +R  AVVK NAYG G   +A AL  AGV+ F V  ++E
Sbjct: 11  LVVDLKALGANVQRQREQLAPGSRILAVVKANAYGNGMVPVASALARAGVEGFCVALLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS---CGVSHPY 124
            ++LR    Q  + VL         +     +   + S+  L  Y +L            
Sbjct: 71  AIELRDSGIQELVLVLGITPVEYAPLAAAQGISLTVGSLEWLKNYQRLAKEEGIKHPLKV 130

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L +DTG  R+G +  E              +   I +H A AD+  +     Q  RF  
Sbjct: 131 HLALDTGMGRIGFTTPEDFKEALQLVAAPCFEFEGIFTHFATADEEDATYFERQRARFDD 190

Query: 185 LISHYKGIEA--SLASSSGILLGPNYHF-QLTRPGISLYGGTDK---INKSHPMQTVVTA 238
            ++          +A+S+  L           R GIS+YG       I +S P++ V + 
Sbjct: 191 FMAVVTKRPPFVHVANSATGLWHQKSIVANTIRMGISMYGANPSGVGIKESFPLEPVTSL 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
                 +++  AGE VSYG       D  +A   +GYADGYP  + G             
Sbjct: 251 VTHATYVKQLKAGESVSYGATYTAKEDEWVATLPVGYADGYPRRMQGF------------ 298

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354
              + G    +LG++ MD  M  +     +  G    + G     +I + DVA  + T N
Sbjct: 299 YVLVDGQRCEVLGRVCMDQMMVRLPKEYPV--GTEAVLMGRSLDQEITVTDVAEYAHTIN 356

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  +G R  + Y
Sbjct: 357 YEILTGMGARLHRRY 371


>gi|261340176|ref|ZP_05968034.1| alanine racemase [Enterobacter cancerogenus ATCC 35316]
 gi|288317692|gb|EFC56630.1| alanine racemase [Enterobacter cancerogenus ATCC 35316]
          Length = 356

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 167/371 (45%), Gaps = 28/371 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFV 62
           +  +  ++DL ALK+N   +   +  +R  +VVK NAYG G ++I  AL   G    F +
Sbjct: 2   SRPVLAQLDLQALKDNLQIVRRAAPGSRVWSVVKANAYGHGIDRIWGAL---GATDGFAL 58

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVS 121
            +++E + LR    +  I +L G     +  + D   L   + S  Q      L    + 
Sbjct: 59  LNLDEAILLRERGWKGPILLLEGFFHADDLPLLDKYRLTTSLHSNWQ---IKALQDAKLH 115

Query: 122 HP--YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            P    L+V++G NRLG   +          N K      +++H A A+ P    +++  
Sbjct: 116 APLDIYLKVNSGMNRLGFQPERVHTVWQQLRNLKNVGEMTLMAHFADAEKPDGIADAM-- 173

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
            R             SL++S+  L  P  HF   RPGI LYG +         +  ++ V
Sbjct: 174 VRVEQAAEGL-DCPRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWQDIANSGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AG+ V YG + + T +  I + A GYADGYP               
Sbjct: 233 MTLRSEIIGVQTLKAGDTVGYGSRYRATGEQRIGIVACGYADGYPR-----------IAP 281

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G     +G ++MDM   D+T      +G  ++++G ++K+DDVA A+GT  Y
Sbjct: 282 SGTPVWVDGVRTGTVGTVSMDMMAIDLTPCPQAGIGTPVELWGNEVKIDDVASAAGTVGY 341

Query: 356 DLLVRIGTRYA 366
           +L+  +  R  
Sbjct: 342 ELMCALAPRVP 352


>gi|227355801|ref|ZP_03840194.1| alanine racemase, catabolic [Proteus mirabilis ATCC 29906]
 gi|227164120|gb|EEI49017.1| alanine racemase, catabolic [Proteus mirabilis ATCC 29906]
          Length = 370

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 165/368 (44%), Gaps = 23/368 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   ++ I+L AL +N   + + +  ++  +VVK +AYG G   + PAL +     F + 
Sbjct: 2   SRPAKISINLDALSHNLSVIKSKAQGSKVWSVVKADAYGHGLSCVWPALSH--TDGFALI 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +++ + LR       I +L G   P    ++   +L  V+ +  Q     +        
Sbjct: 60  ELDKAIMLREQGWVGPILLLEGFFKPDDVYLLERYSLTTVVHADWQFEAIEQAQ-LERPI 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++++G NRLG   ++       +         + +SH A AD   +     Q+   
Sbjct: 119 NIYLKLNSGMNRLGYRPEDYQQAIQRAKRITNIGSIVQMSHFANADSGLNMATQKQI--- 175

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTA 238
               S    +   LA+S+ IL  P  H    RPGI LYG +            +Q V+T 
Sbjct: 176 -IDSSMVNDLPRCLANSAAILFEPQTHHSWVRPGIILYGVSPSGVWQDIADFDLQPVMTF 234

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + ++ I+    GE + YG +    RD  IAV A GYADGYP                G 
Sbjct: 235 NSEVLAIQSVKKGEQIGYGSRYTAQRDMRIAVVACGYADGYPRHA-----------PDGT 283

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              +KG+   ++G+I+MDM   D+TD   +E G  ++++G  + +D+VALA GT  Y+LL
Sbjct: 284 PVIVKGHKTQLVGRISMDMLTIDVTDLPDVEHGSPVELWGNQLPVDEVALACGTIGYELL 343

Query: 359 VRIGTRYA 366
             I  R A
Sbjct: 344 CAIAPRVA 351


>gi|253575144|ref|ZP_04852483.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845600|gb|EES73609.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 391

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 166/382 (43%), Gaps = 28/382 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                ++ L A+ +N       ++   R  AVVK N YG G  + A A  +AG     V 
Sbjct: 15  RETWAEVSLDAIAHNTGLFRKQIAEGCRLMAVVKANGYGHGAVQAAQAAIHAGADCLGVA 74

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
            V+E ++LR       I VL    P   +      +   + +        +     G + 
Sbjct: 75  LVDEALQLRAAGISQPILVLGYTPPFGVEAAVRQGITLTVDTQEVLQETIACAKKQGCAA 134

Query: 123 PYALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              L+VDTG +R+GLS   A+       +       L  + +H A AD P       Q  
Sbjct: 135 RIHLKVDTGMSRIGLSTTRAVIELAELAAAAAPFVILEGVFTHFADADGPDPAYTLEQFA 194

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232
           RF+  +   +  G+        +S+  +  P  H  L R GI+LYG           +P+
Sbjct: 195 RFQACLDALEAHGLHVPIKHCCNSAATMRFPQMHLDLVRIGIALYGLYPSAQLRLPEYPL 254

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  +  + +I  +R+   G+ V YG   +   + LIA   IGYADG   TLS        
Sbjct: 255 QQAMQLKTKIASLRRIKPGQTVGYGRTYRAAEERLIATVPIGYADGLSRTLSNR------ 308

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-----PDIKLDDVA 347
                G   ++G+ VPI+G++ MD TM D+TD  S++ G+ + +FG       I +D+VA
Sbjct: 309 -----GFALVRGHRVPIIGRVCMDQTMLDVTDVESVQAGEEVILFGGTGEAASISIDEVA 363

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY+++ ++G R  + Y
Sbjct: 364 DWIGTINYEVVCQLGVRVPRVY 385


>gi|187924455|ref|YP_001896097.1| alanine racemase [Burkholderia phytofirmans PsJN]
 gi|226711029|sp|B2T5L6|ALR_BURPP RecName: Full=Alanine racemase
 gi|187715649|gb|ACD16873.1| alanine racemase [Burkholderia phytofirmans PsJN]
          Length = 356

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   I  +AL NN       +  ++  AVVK NAYG G  ++ P L       F +  
Sbjct: 3   RPLSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARVFPGLRA--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE VKLR       I +L G   P    +I   +L   + S  QL    ++        
Sbjct: 61  LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRML-EMARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NRLG + ++       +   +      +++H + A          Q++ F 
Sbjct: 120 IQLKMNTGMNRLGYTPEKFRAAWERARAAQGVGQITLMTHFSDA--DGDRGVDYQVQAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G   SLA+S+  L  P  HF   RPGI +YG +        +   +Q  +T  
Sbjct: 178 RGAQGIAGA-RSLANSAATLWHPATHFDWVRPGIIMYGASPSGVTAAIEGTGLQPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G  V YG   K      I V A GYADGYP                G  
Sbjct: 237 SELIAVQTLSEGHTVGYGSSFKARGSMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+ 
Sbjct: 286 VIVDGVRTRVVGRVSMDMLTVDLTPVPTANVGSRVELWGTSLPIDDVAQACGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|85716398|ref|ZP_01047370.1| alanine racemase region protein [Nitrobacter sp. Nb-311A]
 gi|85696755|gb|EAQ34641.1| alanine racemase region protein [Nitrobacter sp. Nb-311A]
          Length = 397

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 182/365 (49%), Gaps = 11/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  A VVK +AYG G   +  AL  AG + FFV +++E 
Sbjct: 31  LTVDLDAIVANWRKLEKAAVPAECAGVVKADAYGCGSRPVVRALSAAGCKTFFVATLDEA 90

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
             +R     A I+VL G            N  PVI  + +L  +       G +   A+ 
Sbjct: 91  RVVRAAASAADIYVLDGFFQNCGDAFATINCRPVIGDINELAEWDVFCRRTGWAGGAAIH 150

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL+  EA            G ++L++SHLACA+  +  +N+ Q+  FR +  
Sbjct: 151 IDTGMNRLGLTPDEAQGILPRIEAGDHG-ITLVMSHLACAESLNHPLNARQVAAFREIAR 209

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASLA+SSGI LGP Y F L RPG +LYG       ++PMQ VV  +ARI+  R 
Sbjct: 210 LFSGVPASLANSSGIFLGPQYQFDLVRPGAALYGVNPTPEAANPMQPVVELKARIVQTRS 269

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R + +AV + GYADGY           S     G    + G   
Sbjct: 270 IDKGESVGYGATWTARRPTRLAVVSAGYADGYFRA------GGSNDGTRGANIVVAGTRC 323

Query: 308 PILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           P+ G+I+MD+   DITD  S   +  G    + G  I +D++A   GT  Y++L  +G R
Sbjct: 324 PVAGRISMDLLAVDITDLPSPGGVRRGHLATLIGEGITVDELAHHFGTIGYEVLTSLGRR 383

Query: 365 YAKFY 369
           Y + Y
Sbjct: 384 YYRIY 388


>gi|257878844|ref|ZP_05658497.1| alanine racemase [Enterococcus faecium 1,230,933]
 gi|257881480|ref|ZP_05661133.1| alanine racemase [Enterococcus faecium 1,231,502]
 gi|257890702|ref|ZP_05670355.1| alanine racemase [Enterococcus faecium 1,231,410]
 gi|258615086|ref|ZP_05712856.1| alanine racemase [Enterococcus faecium DO]
 gi|293560263|ref|ZP_06676760.1| alanine racemase [Enterococcus faecium E1162]
 gi|294621797|ref|ZP_06700956.1| alanine racemase [Enterococcus faecium U0317]
 gi|314938934|ref|ZP_07846199.1| alanine racemase [Enterococcus faecium TX0133a04]
 gi|314943515|ref|ZP_07850282.1| alanine racemase [Enterococcus faecium TX0133C]
 gi|314948190|ref|ZP_07851584.1| alanine racemase [Enterococcus faecium TX0082]
 gi|314951550|ref|ZP_07854596.1| alanine racemase [Enterococcus faecium TX0133A]
 gi|314991587|ref|ZP_07857063.1| alanine racemase [Enterococcus faecium TX0133B]
 gi|314994920|ref|ZP_07860047.1| alanine racemase [Enterococcus faecium TX0133a01]
 gi|257813072|gb|EEV41830.1| alanine racemase [Enterococcus faecium 1,230,933]
 gi|257817138|gb|EEV44466.1| alanine racemase [Enterococcus faecium 1,231,502]
 gi|257827062|gb|EEV53688.1| alanine racemase [Enterococcus faecium 1,231,410]
 gi|291598629|gb|EFF29687.1| alanine racemase [Enterococcus faecium U0317]
 gi|291605713|gb|EFF35150.1| alanine racemase [Enterococcus faecium E1162]
 gi|313590902|gb|EFR69747.1| alanine racemase [Enterococcus faecium TX0133a01]
 gi|313593871|gb|EFR72716.1| alanine racemase [Enterococcus faecium TX0133B]
 gi|313596244|gb|EFR75089.1| alanine racemase [Enterococcus faecium TX0133A]
 gi|313597887|gb|EFR76732.1| alanine racemase [Enterococcus faecium TX0133C]
 gi|313641643|gb|EFS06223.1| alanine racemase [Enterococcus faecium TX0133a04]
 gi|313645323|gb|EFS09903.1| alanine racemase [Enterococcus faecium TX0082]
          Length = 373

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 152/380 (40%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I   A+  N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAIETAEAAVAGGASGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
           ++++EGV+LR       I +L  +      +    +L     +   L   + ++      
Sbjct: 66  SNLDEGVELREAGFTQPILILNMVPYDALTVAVAHDLSVTAGTREWLQAAAAVLEKSKLE 125

Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+ DTG  R+G  + +E  +        ++ +   + +H + AD       ++Q
Sbjct: 126 TPLSIHLKADTGMGRIGFCTPEEVKEAAAFIKESRVLEWEGLFTHFSTADQADDTYWNLQ 185

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            ERF  ++     +     +++S+  L        + R G+++YG       + + +P+Q
Sbjct: 186 KERFIEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I ++K  AGE + YG          I    IGYADG+P  + G        
Sbjct: 246 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWPRKMQGFSL----- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   ++G     +G++ MD  M  +     +  G  + + G     +I + D+A  
Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDIADQ 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++   +G R  + Y
Sbjct: 352 LGTIHYEVACGLGQRIPREY 371


>gi|222054518|ref|YP_002536880.1| alanine racemase [Geobacter sp. FRC-32]
 gi|221563807|gb|ACM19779.1| alanine racemase [Geobacter sp. FRC-32]
          Length = 351

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/358 (27%), Positives = 155/358 (43%), Gaps = 27/358 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
                 AVVK +AYG G   I+  L + GV  F V  + EG++LR       I +L GI+
Sbjct: 4   PGCGLLAVVKADAYGHGFMDISLELESLGVTAFGVAFLAEGIQLRKSGIDRPILILGGIY 63

Query: 88  PGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146
           PGQEK     N+   + S+ Q     +            L+VDTG  RLG+++ EA  F 
Sbjct: 64  PGQEKKCVGFNISTAVFSLEQAKALDETARKLYRKAKVHLKVDTGMGRLGVTIAEAGAFL 123

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFRTLISHYKGI-----EASLAS 198
                 K  +L  I SH A AD+         + Q E F  ++   K +        +A+
Sbjct: 124 RELRGLKNIELEGIFSHFASADELDESGNRYTAQQAEIFALVLQDAKKVGFSPTYVHIAN 183

Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVTAEARIILIRKALAGELVSY 256
           S+           L RPGI LYG     +      ++ V+  ++R+ +++       +SY
Sbjct: 184 SAAAFSRDLPFCNLMRPGIVLYGALPSADFKGKIDVKPVMRLKSRVAMLKWVEQDTSISY 243

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
             +      +L+A   +GYADGY   L+             G+  I+G    + G + MD
Sbjct: 244 ARRYVSQGKTLVASVPVGYADGYDRGLTN-----------KGEALIRGQRARVAGTVCMD 292

Query: 317 MTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             M D+T    ++VGD + + G D     I  +++A  +GT  Y++   I  R  + Y
Sbjct: 293 WIMLDVTHIPGVQVGDEVTLLGCDGQGNCIHAEELAELAGTIPYEIFCGISKRVPRVY 350


>gi|33151809|ref|NP_873162.1| alanine racemase [Haemophilus ducreyi 35000HP]
 gi|71152228|sp|Q7VNC9|ALR_HAEDU RecName: Full=Alanine racemase
 gi|33148030|gb|AAP95551.1| alanine racemase [Haemophilus ducreyi 35000HP]
          Length = 374

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/376 (25%), Positives = 163/376 (43%), Gaps = 31/376 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             I   AL++N   +  L+   +  A++K NAYG G    A  L +  V  F V  + E 
Sbjct: 6   ATISRQALRHNIQLIKKLAPKQKLLAMIKANAYGQGLLPAAATLADL-VDGFGVARLHEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMS---------- 117
           ++++      +I ++ G    +E +         VI  + QL    ++            
Sbjct: 65  LEVQETGYTGKILLVEGFFDREELLKTLSRGFDTVIHCLEQLELLEQVAKEWQIEQQKRF 124

Query: 118 ------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                         L++DTG +RLG+  ++   F     +  L      +SH + AD+  
Sbjct: 125 WQRKTKIYFPINIWLKIDTGMHRLGIHPEQVDLFYARLKSCPLVATISFMSHFSRADELD 184

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--S 229
                 Q+  F      Y     S+A+SSGIL  P  H++  RPGI ++G +        
Sbjct: 185 CGYTEQQIATFEMATEQYSAHSRSIAASSGILYWPQAHYEWVRPGIIMHGISPHYQPITQ 244

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              + V+T  + +I IR   AGE V YGG     + + + V A+GY DGYP         
Sbjct: 245 LGFKPVMTLSSTLIAIRSHKAGEPVGYGGAWISDKATTLGVVAMGYGDGYPR-------- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
              +   G    I G +VPI+G+++MDM   D+      +VGD + ++G D+ ++ VA  
Sbjct: 297 ---NAPEGTPVLINGRIVPIVGRVSMDMLTVDLGIDSQDQVGDEVILWGNDLLIETVAQH 353

Query: 350 SGTTNYDLLVRIGTRY 365
            G  +Y+L+ ++  R 
Sbjct: 354 IGVISYELITKLTPRV 369


>gi|299538299|ref|ZP_07051584.1| alanine racemase [Lysinibacillus fusiformis ZC1]
 gi|298726501|gb|EFI67091.1| alanine racemase [Lysinibacillus fusiformis ZC1]
          Length = 373

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 162/386 (41%), Gaps = 31/386 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M + +F R     IDL A++ N  ++   L  N +  AVVK NAYG G   +A A   AG
Sbjct: 1   MKTQQFFRPTKAIIDLQAIQQNVKNLKEFLRPNVQIIAVVKANAYGHGDVAVARAALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V + +E + +R +  +  I +L               +I    +   +   + L+
Sbjct: 61  ATVLAVATPDEALHIRAHFEEPDILILGASPVSFAPYAAQQRIILTAFADDWMQQAASLL 120

Query: 117 -SCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
               +     +++D+G  R+G+ S QE L+      + +  +L  I +H A AD+  +  
Sbjct: 121 VDEALPLRLHIKIDSGMGRIGIRSEQELLELYQTIQSTENMELDGIFTHFATADEEDTLH 180

Query: 175 NSVQLERFRTLISHYKGIEA--SLASSSGIL-LGPNYHFQLTRPGISLYGGTDKI----N 227
              Q++ F   ++           ++++  L   P+  +   R GIS+YG +        
Sbjct: 181 FDQQVQFFEKCLAVIPNKPRLVHASNTAASLVKDPHLQYDAVRFGISMYGLSPSAYVTSI 240

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
              P+    + E+ ++ +++  +G+ V YG       D  I    IGYADG    L G  
Sbjct: 241 LPFPLLPAFSLESELVHVKQIKSGDSVGYGAIYVAPTDMWIGTIPIGYADGVIRKLGGQ- 299

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      +  I G  +PI+G+I MD  M  +  +    +G+ + + G      + +
Sbjct: 300 -----------EVLIDGQRMPIVGRICMDQCMVALPKAYD--IGEKVTLIGRQGNTGVSI 346

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           D+ A    T NY++   I TR  + Y
Sbjct: 347 DEWATKLETINYEIPCIITTRVPRIY 372


>gi|222153645|ref|YP_002562822.1| alanine racemase [Streptococcus uberis 0140J]
 gi|254802390|sp|B9DVI3|ALR_STRU0 RecName: Full=Alanine racemase
 gi|222114458|emb|CAR43287.1| alanine racemase [Streptococcus uberis 0140J]
          Length = 368

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +      +DL A+++N  ++   +S   +T AVVK NAYG G  ++A A+    V  F V
Sbjct: 6   HRPTVATVDLQAIRDNIKAVQEHISSTTKTFAVVKANAYGHGAIQVAKAVDEE-VDAFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  I   +  +  + ++   ++S   L             
Sbjct: 65  SNLDEALELRQAGIEKDILILGVILANEIPLAIEHSITITVASNEWLESAKACQKDLAQL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+G+   E  +       K    +  I +H A AD+ ++     QL  F
Sbjct: 125 HVHVKVDSGMGRIGVRSLEEANQLIAGLTKSGAHVDGIFTHFATADEENTDKFHQQLAFF 184

Query: 183 RTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             L++    K      ++S+  L   +  F   R GI +YG       +N  +P++  ++
Sbjct: 185 TDLVNALAIKPELVHASNSATSLWHSDTIFNAVRLGIVIYGLNPSGKTLNLPYPLKPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +R++ I+K  AG  V YG       +  +    IGYADG+   + G            
Sbjct: 245 LSSRLVHIKKIKAGNTVGYGATYTAKTEEYVGTLPIGYADGWTRDMQGYS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               I G++  I+G+++MD     +  +    +G  + + G +    I   D+A   GT 
Sbjct: 295 --VIIDGHLCEIIGRVSMDQLTVRLPKAFD--IGQEVTLIGQEGHQMISATDIAEKRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIPRHY 366


>gi|313109932|ref|ZP_07795860.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 39016]
 gi|310882362|gb|EFQ40956.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 39016]
          Length = 363

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 170/367 (46%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+++N+      +   +  AVVK NAYG G  ++  AL++     F V  
Sbjct: 2   RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R     ARI +L G     E  +     L  VI    Q   +       +   
Sbjct: 61  LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAA-GLDIPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +     +    +   +ISH ACAD+ +  +   QLE F 
Sbjct: 120 VWLKLDSGMHRLGFDPAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            L+      + SLA+S+ +L  P  H    RPGI LYG T   + S     ++  ++  A
Sbjct: 180 GLLD-LDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+   GE V YG      R + I   + GYADGYP            +   G   
Sbjct: 239 QLISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    + G+++MDM   D++D     VGD ++++G  + +D+VA A GT  Y+LL +
Sbjct: 288 LVGGRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSK 347

Query: 361 IGTRYAK 367
           +G R  +
Sbjct: 348 VGARVPR 354


>gi|257885752|ref|ZP_05665405.1| alanine racemase [Enterococcus faecium 1,231,501]
 gi|261207115|ref|ZP_05921804.1| alanine racemase [Enterococcus faecium TC 6]
 gi|289565238|ref|ZP_06445689.1| alanine racemase [Enterococcus faecium D344SRF]
 gi|293556893|ref|ZP_06675454.1| alanine racemase [Enterococcus faecium E1039]
 gi|293567805|ref|ZP_06679146.1| alanine racemase [Enterococcus faecium E1071]
 gi|294615126|ref|ZP_06695012.1| alanine racemase [Enterococcus faecium E1636]
 gi|294618734|ref|ZP_06698265.1| alanine racemase [Enterococcus faecium E1679]
 gi|257821608|gb|EEV48738.1| alanine racemase [Enterococcus faecium 1,231,501]
 gi|260078743|gb|EEW66445.1| alanine racemase [Enterococcus faecium TC 6]
 gi|289162894|gb|EFD10743.1| alanine racemase [Enterococcus faecium D344SRF]
 gi|291589390|gb|EFF21197.1| alanine racemase [Enterococcus faecium E1071]
 gi|291592068|gb|EFF23691.1| alanine racemase [Enterococcus faecium E1636]
 gi|291595023|gb|EFF26369.1| alanine racemase [Enterococcus faecium E1679]
 gi|291600977|gb|EFF31268.1| alanine racemase [Enterococcus faecium E1039]
          Length = 373

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 152/380 (40%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I   A+  N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAIETAEAAVAGGASGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
           ++++EGV+LR       I +L  +      +    +L     +   L   + ++      
Sbjct: 66  SNLDEGVELREAGFTQPILILNMVPYDALTVAVAHDLSVTAGTREWLQAAAAVLEKSKLE 125

Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+ DTG  R+G  + +E  +        ++ +   + +H + AD       ++Q
Sbjct: 126 TPLSIHLKADTGMGRIGFCTPEEVKEAAAFIKESRVLEWEGLFTHFSTADQADDTYWNLQ 185

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            ERF  ++     +     +++S+  L        + R G+++YG       + + +P+Q
Sbjct: 186 KERFIEVLKKLPELPRYIHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I ++K  AGE + YG          I    IGYADG+P  + G        
Sbjct: 246 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWPRKMQGFSL----- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   ++G     +G++ MD  M  +     +  G  + + G     +I + D+A  
Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDIADQ 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++   +G R  + Y
Sbjct: 352 LGTIHYEVACGLGQRIPREY 371


>gi|89889690|ref|ZP_01201201.1| alanine racemase [Flavobacteria bacterium BBFL7]
 gi|89517963|gb|EAS20619.1| alanine racemase [Flavobacteria bacterium BBFL7]
          Length = 367

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/371 (28%), Positives = 170/371 (45%), Gaps = 21/371 (5%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+++L AL++N+H +   L    +  AVVK NAYG G   IA  L    V  F V  V 
Sbjct: 7   RLEVNLAALEHNFHYLKSKLQSGVKFMAVVKANAYGHGAVAIAHRLQELDVDYFAVAYVS 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--HPY 124
           E V+LR    +  I VL+           +  + PVI S+  L  +  +        +P 
Sbjct: 67  EAVELRNNGIKKPILVLHA-QAFTLNTCIERCIEPVIYSIEMLDAFIAIAQDKQQSAYPI 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFR 183
            L+ +TG NR+G+  ++  +      +    ++  + SHLA ++D +     + Q+E F+
Sbjct: 126 HLEFNTGLNRIGIDFKDIDEVISKVTSNSSIKVRGLQSHLAASEDLNELDFTNSQIELFK 185

Query: 184 TLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
            + +  +           +++SGIL   + HF + R GI LYG  +       ++ V + 
Sbjct: 186 EINARLEKALPYPFLKHESNTSGILNYKDAHFSMVRSGIGLYGFGNDHTFDKQLKPVASL 245

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ I   R   AGE VSY  +    + +  AV A+G+ DG                +   
Sbjct: 246 KSVISQTRWIEAGESVSYNRKFIAQKRTQYAVIALGHGDGINRIYG----------YGKA 295

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           +  I G + P LG I MDM M DIT+     VGD + IF  +    ++A  +GT +Y++L
Sbjct: 296 QVSINGKLAPTLGIICMDMFMVDITNI-DCYVGDEVIIFNQEFTAREMAEKAGTISYEIL 354

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 355 TGIQKRVPRIY 365


>gi|46907119|ref|YP_013508.1| alanine racemase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092094|ref|ZP_00229887.1| alanine racemase [Listeria monocytogenes str. 4b H7858]
 gi|67460119|sp|Q721S9|ALR_LISMF RecName: Full=Alanine racemase
 gi|46880386|gb|AAT03685.1| alanine racemase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47019534|gb|EAL10274.1| alanine racemase [Listeria monocytogenes str. 4b H7858]
 gi|328467042|gb|EGF38137.1| alanine racemase [Listeria monocytogenes 1816]
          Length = 368

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 152/379 (40%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +     L       +    
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEEL----TLEAP 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ +  EA             QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G + PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAAHYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|150020918|ref|YP_001306272.1| alanine racemase [Thermosipho melanesiensis BI429]
 gi|149793439|gb|ABR30887.1| alanine racemase [Thermosipho melanesiensis BI429]
          Length = 364

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 156/369 (42%), Gaps = 27/369 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +IDL    +N          ++   V+K + YG G   +A A    G+  F V  +EE 
Sbjct: 10  AEIDLKNYIHNLKYFEEKCAPSKVMPVIKADGYGHGAIYLAKAAEKYGIDYFAVAFLEEA 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    ++ I V   I     ++  + N+   + S  Q   Y             + V
Sbjct: 70  LTLRKNGIKSDILVFNYIDKDFVELAVENNITITMLSWEQFELY---KKLKKKPKVHINV 126

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFRTL 185
           DTG NR+G+  ++A  F  N+  +    +    +H A AD            Q + F  L
Sbjct: 127 DTGMNRVGIKPKDAKKFY-NALIENEFIVEGAYTHFAVADSTKKEDILFTKKQYKLFSEL 185

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEARIIL 244
             + K     + +S+G +LG        R GI+ YG       K   +++V+T ++ +  
Sbjct: 186 NLNVK--IKHVNNSAGAILGIVPIENYVRIGIASYGLMPSNEVKDENLKSVLTWKSIVSH 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++    GE +SYG   +      +A   +GYADGY   LS L           G+  I+G
Sbjct: 244 VKHIEPGESISYGRTFRAKEKMKVATIPVGYADGYWRHLSNL-----------GEVLIRG 292

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVR 360
               ILG++ MD  + +  D   ++VGD + + G      I  +++A   G+ NY++  R
Sbjct: 293 RRRKILGRVCMDQFVVEADD--EVQVGDEVVLIGSQGNEKITAEEIAQKVGSINYEVTCR 350

Query: 361 IGTRYAKFY 369
           I +R  + Y
Sbjct: 351 ISSRVPRIY 359


>gi|304312030|ref|YP_003811628.1| Alanine racemase, catabolic [gamma proteobacterium HdN1]
 gi|301797763|emb|CBL45985.1| Alanine racemase, catabolic [gamma proteobacterium HdN1]
          Length = 362

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 189/374 (50%), Gaps = 23/374 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   R  +D++AL++N+  +  L+   R  A++K +AYG G   IA AL +     F V 
Sbjct: 2   SRSTRAVVDISALRHNYQRLRTLAQGRRVMALMKADAYGHGALGIASALPD--ADAFGVA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            + E V+LR    +A I +L G     E        + V+    +   + K  S      
Sbjct: 60  YLGEAVQLREAGVRAPIVLLEGAMAIDELAYAAALDLAVVIHQHEQLQWLKNSSLSRPLT 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSVQ 178
             L+VDTG +RLG++  EA                  +  +++SHLACAD P   + + Q
Sbjct: 120 IWLKVDTGMHRLGIAPSEAASVLAELECLQRAPDPKVREVVVMSHLACADLPDHPMTAQQ 179

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
           L+ F+ +     G + S+A+S+G+LLG ++ F   RPGI LYGG+ + ++S     ++ V
Sbjct: 180 LKAFQEVTRGVGG-QRSIANSAGLLLGDDFGFDWVRPGIMLYGGSPRNDRSAEQLGLRAV 238

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   A II IR   AGE V YG      RD+ + + A+GY DGYP             V 
Sbjct: 239 MKLVAPIIAIRTVAAGESVGYGASWVAERDTRVGIVAVGYGDGYPRH-----------VR 287

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G    + G    +LG+++MDM   D++ +++ ++GD ++++GP + ++ VA  +GT NY
Sbjct: 288 AGACVLLHGCECLLLGRVSMDMLAIDLS-AVNAQLGDEVELWGPSLPVERVANWAGTINY 346

Query: 356 DLLVRIGTRYAKFY 369
           +L  +I  R  + Y
Sbjct: 347 ELFCQITGRVRREY 360


>gi|16802927|ref|NP_464412.1| hypothetical protein lmo0886 [Listeria monocytogenes EGD-e]
 gi|224503145|ref|ZP_03671452.1| hypothetical protein LmonFR_11593 [Listeria monocytogenes FSL
           R2-561]
 gi|17433700|sp|O85045|ALR_LISMO RecName: Full=Alanine racemase
 gi|16410289|emb|CAC98964.1| dal [Listeria monocytogenes EGD-e]
          Length = 368

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 158/379 (41%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  +    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +        + + ++   +
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEAT 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G + PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVGGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|307718295|ref|YP_003873827.1| hypothetical protein STHERM_c05940 [Spirochaeta thermophila DSM
           6192]
 gi|306532020|gb|ADN01554.1| hypothetical protein STHERM_c05940 [Spirochaeta thermophila DSM
           6192]
          Length = 391

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 162/374 (43%), Gaps = 25/374 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             I L+ L++N   +    G  R   A VK +AYG G  ++   L   GV+   V + EE
Sbjct: 8   AVIYLSHLRHNLREIRRRVGEGRMVCAAVKADAYGHGAVEVGKVLVEEGVEMLGVATPEE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           G +L      AR+ +L        ++  +  L   +     +   ++   + G      +
Sbjct: 68  GAEL--AGVGARVLLLGLTDGAGLELAVEAGLELAVGDREYVREVARVARAKGRRVRVHV 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG  R G + +EA+          + +L+ + +H   +D+        Q+ERF  ++
Sbjct: 126 EVDTGMGRTGCAPEEAVGVVEEVEGAGVLELAGMWTHFPSSDEADDGFTEAQVERFLQVV 185

Query: 187 SH--YKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAE 239
                +GI       A+S GI+  P     + RPGISLYG      +   +    V+   
Sbjct: 186 GRVRARGISPGLLHAANSGGIIGHPPSWLDMVRPGISLYGYYPSEEQERTLSLLPVMEFV 245

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++++ ++K   G  VSYG   +  RD+ IA  A GYADGY   LS              +
Sbjct: 246 SQVVFLKKVRKGTPVSYGRTWRAPRDTWIATVAAGYADGYSRLLSSR-----------AE 294

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---IKLDDVALASGTTNYD 356
             I+G   P++G++ MD  M D+     +   D + +FGPD      +++A   GT  Y+
Sbjct: 295 VLIRGRRYPVVGRVCMDQFMVDVGPHPRVRRYDRVVLFGPDPSGPSAEELARLVGTIPYE 354

Query: 357 LLVRIGTRYAKFYT 370
           +   +  R  + Y 
Sbjct: 355 ITCAVSRRVPRLYV 368


>gi|226223505|ref|YP_002757612.1| alanine racemase [Listeria monocytogenes Clip81459]
 gi|254823845|ref|ZP_05228846.1| alanine racemase [Listeria monocytogenes FSL J1-194]
 gi|254931268|ref|ZP_05264627.1| alanine racemase [Listeria monocytogenes HPB2262]
 gi|254992344|ref|ZP_05274534.1| alanine racemase [Listeria monocytogenes FSL J2-064]
 gi|255522573|ref|ZP_05389810.1| alanine racemase [Listeria monocytogenes FSL J1-175]
 gi|300764095|ref|ZP_07074090.1| alanine racemase [Listeria monocytogenes FSL N1-017]
 gi|259710069|sp|C1L1F6|ALR_LISMC RecName: Full=Alanine racemase
 gi|225875967|emb|CAS04671.1| Putative alanine racemase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|293582818|gb|EFF94850.1| alanine racemase [Listeria monocytogenes HPB2262]
 gi|293593068|gb|EFG00829.1| alanine racemase [Listeria monocytogenes FSL J1-194]
 gi|300515085|gb|EFK42137.1| alanine racemase [Listeria monocytogenes FSL N1-017]
 gi|328475449|gb|EGF46215.1| alanine racemase [Listeria monocytogenes 220]
 gi|332311293|gb|EGJ24388.1| Alanine racemase [Listeria monocytogenes str. Scott A]
          Length = 368

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 152/379 (40%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +     L       +    
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEDL----TLEAP 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ +  EA             QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G + PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAAHYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|26247504|ref|NP_753544.1| alanine racemase [Escherichia coli CFT073]
 gi|227886397|ref|ZP_04004202.1| alanine racemase [Escherichia coli 83972]
 gi|300971950|ref|ZP_07171738.1| alanine racemase [Escherichia coli MS 45-1]
 gi|301046830|ref|ZP_07193947.1| alanine racemase [Escherichia coli MS 185-1]
 gi|306813916|ref|ZP_07448089.1| alanine racemase [Escherichia coli NC101]
 gi|27923729|sp|P59237|ALR2_ECOL6 RecName: Full=Alanine racemase, catabolic
 gi|26107905|gb|AAN80104.1|AE016759_378 Alanine racemase, catabolic [Escherichia coli CFT073]
 gi|227836601|gb|EEJ47067.1| alanine racemase [Escherichia coli 83972]
 gi|300301198|gb|EFJ57583.1| alanine racemase [Escherichia coli MS 185-1]
 gi|300411075|gb|EFJ94613.1| alanine racemase [Escherichia coli MS 45-1]
 gi|305852553|gb|EFM53001.1| alanine racemase [Escherichia coli NC101]
 gi|307553240|gb|ADN46015.1| alanine racemase [Escherichia coli ABU 83972]
 gi|315290759|gb|EFU50131.1| alanine racemase [Escherichia coli MS 153-1]
 gi|324006029|gb|EGB75248.1| alanine racemase [Escherichia coli MS 57-2]
          Length = 356

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   +  AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P    +++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SLA+S+  L     HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLANSAATLWHQEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +   +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVLTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|91784141|ref|YP_559347.1| alanine racemase [Burkholderia xenovorans LB400]
 gi|91688095|gb|ABE31295.1| Alanine racemase [Burkholderia xenovorans LB400]
          Length = 356

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/369 (27%), Positives = 155/369 (42%), Gaps = 22/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   I  +AL NN       +  ++  AVVK NAYG G  ++ P L       F +  
Sbjct: 3   RPLSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARVFPGLRA--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE VKLR       I +L G   P    +I   +L   + S  QL    ++        
Sbjct: 61  LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRML-EMARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NRLG + ++       +   +      +++H + A          Q+E F 
Sbjct: 120 IQLKMNTGMNRLGYTPEKFRAAWERARAAQGVGQITLMTHFSDA--DGDRGVDYQVEAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G   SLA+S+  L  P  HF   RPGI LYG +        +   +Q  +T  
Sbjct: 178 RGAQGIAGA-RSLANSAATLWHPATHFDWVRPGIILYGASPSGVTAAIEGTGLQPAMTFA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G  V YG   K      I V A GYADGYP                G  
Sbjct: 237 SELIAVQTLHEGHTVGYGSSFKARGSMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             ++G    I+G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+ 
Sbjct: 286 VIVEGVRTRIVGRVSMDMLTVDLTPIPTANVGSRVELWGNALPIDDVAQACGTIGYELMC 345

Query: 360 RIGTRYAKF 368
            +  R    
Sbjct: 346 AVAPRVPMR 354


>gi|322515165|ref|ZP_08068166.1| alanine racemase [Actinobacillus ureae ATCC 25976]
 gi|322118830|gb|EFX91025.1| alanine racemase [Actinobacillus ureae ATCC 25976]
          Length = 374

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 167/380 (43%), Gaps = 31/380 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     I  + L++N   +   + + +  A++K NAYG G    A AL +  V  F V  
Sbjct: 2   KPATATISQSVLRHNIELIKTFAPHQKLLAMIKANAYGQGLLPAAGALTDL-VDGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLT------------- 110
           + E ++++      +I ++ G    +E +         V+  + QL              
Sbjct: 61  LREALEIQETGYTGKILLVEGFFDREELLKTLSRRFDTVVHCLEQLELLEQVAQEWQQEQ 120

Query: 111 ---FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
              F+ +           L++DTG +RLG+  ++   F        L +    +SH + A
Sbjct: 121 QKGFWKRKAKIYFPVNVWLKIDTGMHRLGVHPEQVDMFYQRLQACPLVESISFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225
           D+P       Q+  F    + Y   E S+++SSGIL     H+   RPGI ++G +    
Sbjct: 181 DEPDCGYTEKQIATFEAATAPYTTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP     
Sbjct: 241 PITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYPR---- 296

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                  +   G    + G + PI+G+++MDM   D+      +VGD +  +G D+ +++
Sbjct: 297 -------NAPEGTPVLVNGRIAPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEE 349

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA   G  +Y+L+ ++  R 
Sbjct: 350 VAQHIGVISYELITKLTPRV 369


>gi|16129153|ref|NP_415708.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108035|ref|AP_001815.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr.
           W3110]
 gi|170080818|ref|YP_001730138.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238900421|ref|YP_002926217.1| alanine racemase 2, PLP-binding [Escherichia coli BW2952]
 gi|256023134|ref|ZP_05436999.1| alanine racemase [Escherichia sp. 4_1_40B]
 gi|300951652|ref|ZP_07165476.1| alanine racemase [Escherichia coli MS 116-1]
 gi|300955586|ref|ZP_07167944.1| alanine racemase [Escherichia coli MS 175-1]
 gi|301029512|ref|ZP_07192593.1| alanine racemase [Escherichia coli MS 196-1]
 gi|2506172|sp|P29012|ALR2_ECOLI RecName: Full=Alanine racemase, catabolic
 gi|1651592|dbj|BAA36045.1| alanine racemase 2, PLP-binding [Escherichia coli str. K12 substr.
           W3110]
 gi|1787439|gb|AAC74274.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr.
           MG1655]
 gi|169888653|gb|ACB02360.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238859950|gb|ACR61948.1| alanine racemase 2, PLP-binding [Escherichia coli BW2952]
 gi|260449676|gb|ACX40098.1| alanine racemase [Escherichia coli DH1]
 gi|299877620|gb|EFI85831.1| alanine racemase [Escherichia coli MS 196-1]
 gi|300317515|gb|EFJ67299.1| alanine racemase [Escherichia coli MS 175-1]
 gi|300449098|gb|EFK12718.1| alanine racemase [Escherichia coli MS 116-1]
 gi|309701490|emb|CBJ00797.1| alanine racemase, catabolic [Escherichia coli ETEC H10407]
 gi|315135826|dbj|BAJ42985.1| alanine racemase [Escherichia coli DH1]
 gi|323937908|gb|EGB34172.1| alanine racemase [Escherichia coli E1520]
 gi|323942468|gb|EGB38636.1| alanine racemase [Escherichia coli E482]
 gi|332342769|gb|AEE56103.1| alanine racemase [Escherichia coli UMNK88]
          Length = 356

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 162/368 (44%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  A+   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|253989451|ref|YP_003040807.1| alanine racemase, catabolic [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780901|emb|CAQ84063.1| alanine racemase, catabolic [Photorhabdus asymbiotica]
          Length = 357

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/367 (26%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I L AL+NN   +    GN++  AVVK NAYG G   I P L       F +  
Sbjct: 3   RPISATIHLDALENNLAVIRNKVGNSKIWAVVKANAYGHGLRCIWPHLDQ--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
             E + LR    Q  I +L G   P   +II +  L  V+ S  QL       +      
Sbjct: 61  FNEAILLREQGWQRPILLLEGFFQPEDLRIIDEYQLTTVVHSHWQLKAIEAA-NFSHPIN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG    +  +    + N +      ++SH A A        + QL    
Sbjct: 120 IYLKLNSGMNRLGFPADQYREVLSLAKNIRQIGQITLMSHFANA--DKKIGVTEQLNVID 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
           ++      I   LA+S   L  P  H    R GI+LYG +            ++ V++ +
Sbjct: 178 SVSQGL-NISQCLANSGACLWYPQTHRDWVRTGIALYGASPSGKWEDIADVGLKAVMSLK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   AG+ + YG +        +   A GYADGYP                G  
Sbjct: 237 SEIIAVQNLKAGDKIGYGSKYTAPGPMRVGTVACGYADGYPRCA-----------MTGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    +LG I+MDM   D+T     ++G  ++++G ++ +DDVA   GT  Y+LL 
Sbjct: 286 VIVNGVRTQMLGAISMDMMTVDLTPCPQAQIGSPVELWGQNLPVDDVAGVPGTIGYELLC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 ALAERVP 352


>gi|330721327|gb|EGG99406.1| Alanine racemase2C catabolic [gamma proteobacterium IMCC2047]
          Length = 334

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 148/341 (43%), Gaps = 17/341 (4%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG-QE 91
            A++K +AYG G E+ A AL +       V  ++E + LR       I +L G     + 
Sbjct: 1   MAMLKADAYGHGAEQAALALNSY-TDAIAVAFIDEAIALREAGINKPITLLQGTFDEREI 59

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
           ++     L  V+    Q          G      L+ D+G +RLG S  E   +      
Sbjct: 60  ELACQYTLDLVVLHGEQAEMLEAA-DPGCQLTVWLKFDSGMHRLGFSADEYAYWYERLSK 118

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
                   +++H +CAD+P + V   Q   F            SLA+S+ I+  P+    
Sbjct: 119 HPNVAEVRLMTHFSCADEPENPVTKEQEALFDKKTKGLSCTTYSLANSAAIMAWPSTLRD 178

Query: 212 LTRPGISLYGGTDKINKSHPMQ---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
             RPG+ LYG     +     +    V+T +  II  R   AGE V YG     +    I
Sbjct: 179 WVRPGVMLYGVCPFADWRENHRDLRPVMTLKTVIISTRTLEAGEAVGYGRSWVASEKCRI 238

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
            VA+IGYADGYP  L             G    + G  V ++G++TMDM   D+T    +
Sbjct: 239 GVASIGYADGYPRCLPN-----------GTPVLVNGQRVSMVGRVTMDMITLDLTGVADV 287

Query: 329 EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +VGD + ++G  + ++++A  +GT  Y+LL  +  R  + Y
Sbjct: 288 KVGDEVTLWGEGLAVEEIAEYAGTIAYELLTGVSKRVPRIY 328


>gi|227512311|ref|ZP_03942360.1| alanine racemase [Lactobacillus buchneri ATCC 11577]
 gi|227522397|ref|ZP_03952446.1| alanine racemase [Lactobacillus hilgardii ATCC 8290]
 gi|227084486|gb|EEI19798.1| alanine racemase [Lactobacillus buchneri ATCC 11577]
 gi|227090455|gb|EEI25767.1| alanine racemase [Lactobacillus hilgardii ATCC 8290]
          Length = 374

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 91/382 (23%), Positives = 148/382 (38%), Gaps = 30/382 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              RL I+  A+ NN  +    +        VVK N YG G  ++A    NAG + F V 
Sbjct: 7   RNARLIINQKAIYNNVKNAVTHTQSGTDLFVVVKANGYGHGAVQVARIAENAGAKGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT---FYSKLMSCGV 120
            +EEG++LR       I VL    P    I  D+++   +SS   L          +   
Sbjct: 67  LLEEGLELRQAGFTEPILVLGITEPTFAPIARDSHISLTVSSEEWLKTAGIILNQQASKE 126

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQ 178
                L +DTG  R+G    + L        K         I +H A AD         Q
Sbjct: 127 KLHVHLAMDTGMGRIGFQTPDELQEAMLVLKKYQDTFDFEGIFTHFATADSKDDTYFQYQ 186

Query: 179 LERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232
            E ++ +++    K     +A+++  L        + R GIS YG      +     + +
Sbjct: 187 YENYQKMLAVVDKKPKYVHVANTATSLWHKVCGANMVRYGISTYGLNPSGKEITRTPYTL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++ +A +  ++K   G+ + YG   +   D  I    IGYADG+P  + G       
Sbjct: 247 FPAMSFQAGLSYVKKVPKGKSIGYGATYQTKEDEWIGTVPIGYADGFPRKMQGFS----- 301

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                    + G   PI+G++ MD  M  +      +    + I G     +I +DD+A 
Sbjct: 302 -------VLVDGQYCPIVGRVCMDQFMIKLPKQYGTD--TVVTIIGKSGAHEITVDDIAD 352

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
             GT NY+++     R  + Y 
Sbjct: 353 QLGTINYEVVCGFSERLQRKYV 374


>gi|227528902|ref|ZP_03958951.1| alanine racemase [Lactobacillus vaginalis ATCC 49540]
 gi|227351176|gb|EEJ41467.1| alanine racemase [Lactobacillus vaginalis ATCC 49540]
          Length = 374

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 159/381 (41%), Gaps = 35/381 (9%)

Query: 8   RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +L +DL A+K+N H    +L+ N++  AVVK NAYG G   +A     AG     V  ++
Sbjct: 10  KLIVDLGAIKHNIHEQQKSLAPNSKILAVVKANAYGNGLVPVAQTAIKAGATGTCVAILD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---VSHP 123
           E ++LR     + I VL         I  +  +   + S+  L  Y +L           
Sbjct: 70  EALELRDSGITSLILVLGITPVENAHIAAEAGVSLTVGSLDWLEDYHQLAIANHWTKPLK 129

Query: 124 YALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             L +D+G  R+G     S  EA+ F          +   + +H A AD       + Q+
Sbjct: 130 VHLGIDSGMGRIGFTTVESFNEAVKFVRE---HHEFEFEGMFTHFATADSADDSYFNKQV 186

Query: 180 ERFRTLISHYKGIEA--SLASSS-GILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQ 233
            ++   +S    +     +A+S+ G+           R GIS+YG      ++  +  +Q
Sbjct: 187 NKWEQFVSSLTELPPFVHMANSATGMWHREKITANTVRMGISMYGQNPSGRELAATLDLQ 246

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V      I  ++K  AGE VSYG       D  +A   IGYADGYP  ++G        
Sbjct: 247 PVEQLVTSISFVKKLKAGESVSYGATYTAQEDEWLATLPIGYADGYPRCMTGY------- 299

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                K  + G    I G++ MD  M  +     +  G  + + G     +I  +D+A  
Sbjct: 300 -----KVLVDGQFCDIAGRVCMDQMMIRLPKPYPV--GTQVVLMGRSGNKEITANDLADR 352

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           + T NY+++  I  R  + YT
Sbjct: 353 ADTINYEIMTNISNRVHRVYT 373


>gi|254360577|ref|ZP_04976726.1| alanine racemase [Mannheimia haemolytica PHL213]
 gi|153091117|gb|EDN73122.1| alanine racemase [Mannheimia haemolytica PHL213]
          Length = 374

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 165/380 (43%), Gaps = 31/380 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     ID  AL++N   + + +   +  A++K NAYG G    A  L +  V  F V  
Sbjct: 2   KPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLPAAGTLADM-VDGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMS------ 117
           + E ++++      +I ++ G    +E +         VI ++ QL    ++        
Sbjct: 61  LREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHNLEQLELLEQVAKEWQAEQ 120

Query: 118 ----------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
                             L++DTG +RLG+  ++   F     N  L      +SH + A
Sbjct: 121 QKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVERLKNCALVNSISFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225
           D+        Q+  F      Y+  + S+++SSGIL     H+   RPGI ++G +    
Sbjct: 181 DELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                  + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP     
Sbjct: 241 PITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVTAMGYGDGYPR---- 296

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                  +   G    I G +VPI+G+++MDM   D+      +VGD    +G  + ++D
Sbjct: 297 -------NAPEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKVGDKAIFWGEQLLIED 349

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA   G  +Y+L+ ++  R 
Sbjct: 350 VAKHIGVISYELITKLTPRV 369


>gi|313638720|gb|EFS03820.1| alanine racemase [Listeria seeligeri FSL S4-171]
          Length = 368

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 149/379 (39%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +    L  N    +VVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRCAIRENIKNEQKKLPKNVAVWSVVKANAYGHGIIEVAKTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    N+   I     L      +     
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAHNNISLTIFREDWLDG----VHLETP 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L++D+G  RLG+ S +EA           +  L    +H A AD   +     QL 
Sbjct: 122 LKVHLKIDSGMGRLGIRSAEEAEQIEAKIVQTDMFFLEGAYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQT 234
           +F  ++   K        A+S+  LL     F   R GIS+YG T  I    N    ++ 
Sbjct: 182 KFDAILKGLKSRPRFVHAANSAAALLQSQIGFDAVRFGISMYGLTPSIEIKSNLPFKLKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ ++K   G+ VSYG     T    IA   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKKLAPGDSVSYGATYTATEREWIATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               +  + G   PI+G++ MD T+  +      + G  + I G D    +  DD A   
Sbjct: 294 ----QVLVDGKKAPIIGRVCMDQTIIKLP--YEFQTGTKVTIIGTDHGNSVTADDAAKYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLTERIPRKY 366


>gi|304385540|ref|ZP_07367884.1| alanine racemase [Pediococcus acidilactici DSM 20284]
 gi|304328044|gb|EFL95266.1| alanine racemase [Pediococcus acidilactici DSM 20284]
          Length = 375

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 149/377 (39%), Gaps = 25/377 (6%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   RL +D  A++ N    +  L   +   AV+K +AYG G   +A     AG   F V
Sbjct: 6   HRASRLVVDAAAIRQNVKKEIERLDHQSELFAVIKADAYGHGLIPVARYTEQAGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E + LR       I VL   +     +  + N+   +  V  LT  +  ++     
Sbjct: 66  AILDEALTLREAGFAEPILVLGITNVKWAALAAEKNVSLTVGDVEWLTKAAPQLTAEHPL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +DTG  R+G    + L+       K        + +H A AD+      ++Q++R
Sbjct: 126 KVHLALDTGMGRIGFQESDGLNQAAKLLIKDPRFVFEGVFTHFATADEKDPTYFNLQVDR 185

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F  L+           +++++  L     +  L R G+ +YG       +   + +Q  +
Sbjct: 186 FHKLVDTLPEKPRYVHVSNTATSLWHAACNGNLIRFGVGIYGMNPSGTVLEPPYDLQPAM 245

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+R+   +    G  VSYG      +D  I    IGYADGYP  L G           
Sbjct: 246 TLESRLSFSKLLKKGRSVSYGATYTAEQDEWIGTIPIGYADGYPRCLQGF---------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI----FGPDIKLDDVALASGT 352
                + G+   I+G++ MD  M  +        G  + +     G  I + D+A   GT
Sbjct: 296 --HVLVDGHFCEIVGRVCMDQLMIRLPHEYPA--GTPVILAGQSQGKSISMTDIADYVGT 351

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++      R  + Y
Sbjct: 352 INYEITCGFTERLPRVY 368


>gi|302751952|gb|ADL66129.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus str.
           JKD6008]
          Length = 372

 Score =  370 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/374 (26%), Positives = 162/374 (43%), Gaps = 33/374 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   F V +++E ++
Sbjct: 3   VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 62

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128
           LR++   A+I VL  +            +   + S   L    K +           +++
Sbjct: 63  LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 122

Query: 129 DTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           DTG  RLG+    + QE ++        +      + +H ACAD+P   + + Q +RF+ 
Sbjct: 123 DTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD-MTTEQYQRFKD 178

Query: 185 LISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAE 239
           +++   K       +S+G LL         RPGISLYG              ++  V   
Sbjct: 179 MVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLI 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G              
Sbjct: 239 ANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF------------ 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G+   ++G++ MD T+  + D   ++ GD + +          ++ VA    T NY
Sbjct: 287 VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAEKQHTINY 344

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +  R  + Y
Sbjct: 345 EVLCNLSRRLPRIY 358


>gi|13473409|ref|NP_104976.1| alanine racemase [Mesorhizobium loti MAFF303099]
 gi|20137427|sp|Q98F05|ALR2_RHILO RecName: Full=Alanine racemase, catabolic
 gi|14024158|dbj|BAB50762.1| alanine racemase [Mesorhizobium loti MAFF303099]
          Length = 381

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 179/366 (48%), Gaps = 17/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A++ N+  + AL G    A VVK N YGLG  K+A AL   G   FFV  + EG
Sbjct: 27  LTIDLGAIRENYRRLKALLGGVHCAGVVKANGYGLGAAKVAAALTREGCDIFFVALLAEG 86

Query: 69  VKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           + LR        I+VL G+ PG E       L  VI+S  QL  +   +   G   P A+
Sbjct: 87  IALRKAVGTGPDIYVLNGLPPGSEPEAVAAGLCAVINSGAQLKAWRAAVHDAGRRLPAAI 146

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVD+G +RLG++  E      +S       +  ++SHLACAD+P    N  Q   F  L 
Sbjct: 147 QVDSGMSRLGMAPAEVEALAGDSSAFDGIDIKYVMSHLACADEPRHPANEQQRLAFERLR 206

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +      ASLA+SSGI LGP+YH  L RPG +LYG      + +PM  VV  +A++   R
Sbjct: 207 AMLPRAPASLANSSGIFLGPSYHHDLARPGAALYGINPTPGEPNPMLPVVWLQAKVAQTR 266

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   G  + YG          +A  + GYADG+                     + +G  
Sbjct: 267 RIEKGAGIGYGHSYHADGPLSLATISFGYADGWLRR-------------SASAAWFEGVR 313

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +P LG+++MD  + DI+      +  GD +++ GP   +DD A  +GT  Y++L  +G R
Sbjct: 314 LPFLGRVSMDSIILDISALPPGRLREGDLVELLGPSQSVDDAAGHAGTIGYEILASLGPR 373

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 374 FHRHYV 379


>gi|3661473|gb|AAC61705.1| alanine racemase [Escherichia coli]
          Length = 356

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 161/368 (43%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  A+   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P      +   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGRM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGRSPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------LTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALALRVP 352


>gi|289434154|ref|YP_003464026.1| hypothetical protein lse_0787 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170398|emb|CBH26938.1| alr [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 368

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 151/379 (39%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID +A++ N  +  N L  N    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRSAIRENIKNEQNKLPKNVVVWAVVKANAYGHGIIEVAKTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    N+   I     L      +     
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAHNNISLTIFREDWLDG----VHLETP 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L++D+G  RLG+ S +EA           +  L    +H A AD   +     QL 
Sbjct: 122 LKVHLKIDSGMGRLGIRSAEEAEQIEAKIVQTDMFFLEGAYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQT 234
           +F  ++   K        A+S+  LL     F   R GIS+YG T  I    N    ++ 
Sbjct: 182 KFDAILKGLKSRPRFVHTANSAAALLQSQIGFDAVRFGISMYGLTPSIEIKSNLPFKLKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               +  + G   PI+G++ MD T+  +      + G  + I G D    +  DD A   
Sbjct: 294 ----QVLVDGKKAPIIGRVCMDQTIIKLP--YEFQTGSKVTIIGMDHGNSVTADDAAKYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLTERIPRKY 366


>gi|240949115|ref|ZP_04753463.1| alanine racemase [Actinobacillus minor NM305]
 gi|240296510|gb|EER47142.1| alanine racemase [Actinobacillus minor NM305]
          Length = 374

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/380 (25%), Positives = 164/380 (43%), Gaps = 31/380 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  
Sbjct: 2   KPATATISQEALRHNIQLIKTFAPKQKLLAMIKANAYGQGLLPAAGTLSDL-VEGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLT------------- 110
           + E ++++      +I ++ G    +E +         VI  + QL              
Sbjct: 61  LREALEIQETGYTGKIVLVEGFFDREELLKTLSRRFDTVIHCLEQLELLEQVAKEWDAEQ 120

Query: 111 ---FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
              F+ +           L++DTG +RLG+  ++   F        L      +SH + A
Sbjct: 121 RKGFWKRKAKIYFPVHIWLKIDTGMHRLGVHPEQVEMFYQRLKACSLVASISFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
           D+        Q+  F      Y   E S+++SSGIL     H+   RPGI ++G +    
Sbjct: 181 DELDCGYTEKQIATFEAATKPYPEHERSISASSGILYWQQAHYDWVRPGIIMHGISPHYE 240

Query: 228 K--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
              S   + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP     
Sbjct: 241 PITSLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVIAMGYGDGYPRNA-- 298

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                      G    + G  VPI+G+++MDM   D+      +VGD +  +G D++++D
Sbjct: 299 ---------PEGTPVLVNGRKVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLQIED 349

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA   G  +Y+L+ ++  R 
Sbjct: 350 VAKHIGVISYELITKLTPRV 369


>gi|309798696|ref|ZP_07692961.1| alanine racemase [Streptococcus infantis SK1302]
 gi|308117639|gb|EFO55050.1| alanine racemase [Streptococcus infantis SK1302]
          Length = 367

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 159/381 (41%), Gaps = 27/381 (7%)

Query: 1   MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M +  +   +  I L A++ N   M A    +    AVVK NAYG G   +A A+ +  V
Sbjct: 1   MKTSPHRPTKALIHLEAIRYNIQQMGAHIPQDTLKWAVVKANAYGHGAVAVAMAIQD-DV 59

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V++++E ++LR      +I +L         +  D ++   ++ +  +       S
Sbjct: 60  YGFCVSNIDEAIELRQAGISKKILILGVSEVESLSLAKDFDITLTVAGLEWIQKLIATES 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                   L++D+G  R+G       +       +    +  I +H A AD+ S      
Sbjct: 120 DLSGLTVHLKIDSGMGRIGFRSASEAEEAQTLLKEHGANVEGIFTHFATADEESDSYFKE 179

Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
           QLE F+ +++  + +      ++S+  L      F   R G S+YG       +   + +
Sbjct: 180 QLEFFKEILAGLQEVPELVHASNSATTLWHAETIFSAVRMGDSMYGLNPSGQVLKLPYEL 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T E+ I+ ++   AG  + YG   +   + +IA   IGYADG+   +         
Sbjct: 240 KPALTLESAIVHVKTVPAGACMGYGATYQADGEQVIATVPIGYADGWTRDMQNFS----- 294

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G + PI+G+++MD     +     +  G  + + G     +I   +VA+
Sbjct: 295 -------VLVDGQLCPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATNVAV 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+++  +  R  + Y
Sbjct: 346 YRGTINYEVVCLLSDRIPREY 366


>gi|317048429|ref|YP_004116077.1| alanine racemase [Pantoea sp. At-9b]
 gi|316950046|gb|ADU69521.1| alanine racemase [Pantoea sp. At-9b]
          Length = 356

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 165/370 (44%), Gaps = 26/370 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   I+  AL++N   +   +  +R  +VVK NAYG G  ++  +L       F + 
Sbjct: 2   SRPIVATINQQALRHNLAVVRQAAPASRIWSVVKANAYGHGIRRVWQSLAE--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    ++  + D   L   + S  Q+   ++        
Sbjct: 60  NMEEAILLREQGWKKPILLLEGFFHAEDLQLIDRYRLTTSVHSNWQIQALAQAQ-LSAPI 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   ++                  +++H A A++P        +E  
Sbjct: 119 DIYVKVNSGMNRLGFRPEQVNAAWQALRGLANVGEMTLMAHFADAENPQGI-----IEPM 173

Query: 183 RTLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           + +    +G+    SL++S+  L  P  HF   RPGI LYG +   N     S  +  V+
Sbjct: 174 KRIERAAEGLNCPRSLSNSAATLWHPEAHFDWVRPGIVLYGASPSGNWQDIASTGLTPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II I++  AG+ V YG +   +    I V A GYADGYP                
Sbjct: 234 TLTSEIIGIQQLQAGDGVGYGYRYHASAAQRIGVVACGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G M   +G I+MDM M D+       +G  ++++G  +K+DDVA A+GT  Y+
Sbjct: 283 GTPVSVDGVMTRTVGAISMDMIMIDLEPCPQAGIGSKVELWGEQVKIDDVAKAAGTVGYE 342

Query: 357 LLVRIGTRYA 366
           L+  +  R  
Sbjct: 343 LMCALAPRVP 352


>gi|254832148|ref|ZP_05236803.1| hypothetical protein Lmon1_12409 [Listeria monocytogenes 10403S]
 gi|3414683|gb|AAC31362.1| alanine racemase [Listeria monocytogenes]
          Length = 368

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 157/379 (41%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L  +    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +    ++   +        + + ++   +
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEAT 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQTILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G   PI+G++ MD T+  +      + G  + I G D    +  DD A   
Sbjct: 294 ----HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTVTADDAAQYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLNERIPRKY 366


>gi|223041769|ref|ZP_03611961.1| alanine racemase [Actinobacillus minor 202]
 gi|223017420|gb|EEF15839.1| alanine racemase [Actinobacillus minor 202]
          Length = 374

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/380 (25%), Positives = 163/380 (42%), Gaps = 31/380 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +     I   AL++N   +   +   +  A++K NAYG G    A  L +  V+ F V  
Sbjct: 2   KPATATISQEALRHNIQLIKTFAPKQKLLAMIKANAYGQGLLPAAGTLSDL-VEGFGVAR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLT------------- 110
           + E ++++      +I ++ G    +E +         VI  + QL              
Sbjct: 61  LREALEIQETGYTGKIVLVEGFFDREELLKTLSRRFDTVIHCLEQLELLEQVAKEWDEEQ 120

Query: 111 ---FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
              F+ +           L++DTG +RLG+  ++   F        L      +SH + A
Sbjct: 121 RKGFWKRKAKIYFPVHIWLKIDTGMHRLGVHPEQVEMFYQRLKACSLVASISFVSHFSRA 180

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
           D+        Q+  F      Y   E S+++SSGIL     H+   RPGI ++G +    
Sbjct: 181 DELDCGYTEKQIATFEAATKPYPEHERSISASSGILYWQQAHYDWVRPGIIMHGISPHYE 240

Query: 228 K--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
              S   + V+T  + +I +R   AGE V YGG     +D+ + V A+GY DGYP     
Sbjct: 241 PITSLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVIAMGYGDGYPRNA-- 298

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                      G    + G  VPI+G+++MDM   D+      +VGD +  +G D+ ++D
Sbjct: 299 ---------PEGTPVLVNGRKVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIED 349

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA   G  +Y+L+ ++  R 
Sbjct: 350 VAKHIGVISYELITKLTPRV 369


>gi|307709632|ref|ZP_07646084.1| alanine racemase [Streptococcus mitis SK564]
 gi|307619530|gb|EFN98654.1| alanine racemase [Streptococcus mitis SK564]
          Length = 367

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 159/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVATAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I +L         +  + ++   ++ +  +       +     
Sbjct: 65  SNIDEAIELRQAGLSKKILILGVSDIEAVALAKEYDITLTVAGLEWIQALLVKEADLSGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +   +   +    +  I +H A AD+ S    ++QLERF
Sbjct: 125 RVHLKIDSGMGRIGFREAGEANKAQDLLQQHGAHVEGIFTHFATADEESDDYFNIQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + ++  +T
Sbjct: 185 KTILASMKEVPEMVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGTNGDKEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|145704|gb|AAC36881.1| catabolic alanine racemase [Escherichia coli]
          Length = 356

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 161/368 (43%), Gaps = 24/368 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  A+   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P      +   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGRM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGRSPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------LTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALAVRVP 352


>gi|296158928|ref|ZP_06841756.1| alanine racemase [Burkholderia sp. Ch1-1]
 gi|295890803|gb|EFG70593.1| alanine racemase [Burkholderia sp. Ch1-1]
          Length = 356

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/367 (27%), Positives = 155/367 (42%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   I  +AL NN       +  ++  AVVK NAYG G  ++ P L       F +  
Sbjct: 3   RPLSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARVFPGLRA--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE VKLR       I +L G   P    +I   +L   + S  QL    ++        
Sbjct: 61  LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRML-EMARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NRLG + ++       +   +      +++H + A          Q+E F 
Sbjct: 120 IQLKMNTGMNRLGYTPEKFRAAWERARAAQGVGQITLMTHFSDA--DGDRGVDYQVEAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G   SLA+S+  L  P  HF   RPGI +YG +        +   +Q  +T  
Sbjct: 178 RGAQGIAGA-RSLANSAATLWHPATHFDWVRPGIIMYGASPSGVTAAIEGTGLQPAMTFA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G  V YG   K      I V A GYADGYP                G  
Sbjct: 237 SELIAVQTLNEGHTVGYGSSFKARGSMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             ++G    I+G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+ 
Sbjct: 286 VIVEGVRTRIVGRVSMDMLTVDLTPIPTANVGSRVELWGNALPIDDVAQACGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|192291866|ref|YP_001992471.1| alanine racemase [Rhodopseudomonas palustris TIE-1]
 gi|192285615|gb|ACF01996.1| alanine racemase [Rhodopseudomonas palustris TIE-1]
          Length = 413

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 180/364 (49%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  +  A VVK +AYG G   +  AL  AG + FFV ++ E 
Sbjct: 36  LTIDLDALVANWRKLEKTAIPSECAGVVKGDAYGCGAGPVTKALLAAGCKTFFVATLSEA 95

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
             +R   P A ++VL G  P         N  PVI  + +L  +       G     AL 
Sbjct: 96  RVVREAAPNATLYVLDGFFPNSGDEFAKLNCQPVIGDLYELAEWDVFCRRTGWRGGAALH 155

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLGL++ EA            G ++L+ISHLACAD  +  +N+ Q   FR +  
Sbjct: 156 IDTGMSRLGLTIVEAQGIVPRIVAGDHG-ITLVISHLACADLVNHQLNAKQAAAFREIAG 214

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSGI LGP + F L RPG +LYG        +PMQ VV  +ARI+ +R 
Sbjct: 215 QFTGVSASLSASSGIFLGPQFAFDLVRPGAALYGINPTPEADNPMQPVVDLKARIVQVRS 274

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YG      R S IAV + GYADGY       D         G    I G   
Sbjct: 275 VERGDTVGYGATWSARRPSKIAVVSAGYADGYFRAAGSSDGTR------GADVIIAGQRC 328

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI G+I+MD+   DITD    +   G    + G  I +D++    GT  Y++L  +G RY
Sbjct: 329 PIAGRISMDLLAVDITDLPANAARRGMMATLIGDGITVDELGHHFGTIGYEVLTSLGRRY 388

Query: 366 AKFY 369
            + Y
Sbjct: 389 TRIY 392


>gi|197285367|ref|YP_002151239.1| alanine racemase, catabolic [Proteus mirabilis HI4320]
 gi|194682854|emb|CAR43168.1| alanine racemase, catabolic [Proteus mirabilis HI4320]
          Length = 370

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 165/368 (44%), Gaps = 23/368 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   ++ I+L AL +N   + + +  ++  +VVK +AYG G   + PAL +     F + 
Sbjct: 2   SRPAKISINLDALSHNLSVIKSKAQGSKVWSVVKADAYGHGLSCVWPALSH--TDGFALI 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +++ + LR       I +L G   P    ++   +L  V+ +  Q     +        
Sbjct: 60  ELDKAIMLREQGWVGPILLLEGFFKPDDVYLLERYSLTTVVHADWQFEAIEQAQ-LERPI 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++++G NRLG   ++       +         + +SH A AD   +     Q+   
Sbjct: 119 NIYLKLNSGMNRLGYRPEDYQQAIQRAKGITNIGSIVQMSHFANADTGLNMATQKQI--- 175

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTA 238
               S    +   LA+S+ IL  P  H    RPGI LYG +            +Q V+T 
Sbjct: 176 -IDSSMVNDLPRCLANSAAILFEPQTHHSWVRPGIILYGVSPSGVWQDIADFDLQPVMTF 234

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + ++ I+    GE + YG +    RD  IAV A GYADGYP                G 
Sbjct: 235 NSEVLAIQSVKKGEQIGYGSRYTAQRDMRIAVVACGYADGYPRHA-----------PDGT 283

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              +KG+   ++G+I+MDM   D+TD   +E G  ++++G  + +D+VALA GT  Y+LL
Sbjct: 284 PVIVKGHKTQLVGRISMDMLTIDVTDLPDVEHGSPVELWGNQLPVDEVALACGTIGYELL 343

Query: 359 VRIGTRYA 366
             I  R A
Sbjct: 344 CAIAPRVA 351


>gi|309388300|gb|ADO76180.1| alanine racemase [Halanaerobium praevalens DSM 2228]
          Length = 377

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 170/378 (44%), Gaps = 24/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               L+I + AL  N+  +   L+   + AAVVK +AYG G  KIA  L   G +   V 
Sbjct: 7   RPAWLEIKMKALAKNYKFIRSKLNKKTKIAAVVKADAYGHGAVKIAKKLVCLGTEYLCVG 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           S EEG++LR    +  I VL  + P Q + I   +LI   +S   L   +K         
Sbjct: 67  SPEEGIELRNAGLEVPILVLAEVLPAQYQSILAGDLIQTAASRETLFALNKFAAKNNKKI 126

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+ DTG  R+G   +E  +    + +    +L  I SHLA AD+     ++ QL RF
Sbjct: 127 KIHLKCDTGMGRIGFLPEELFEVYKLALSLDNLKLEGIFSHLARADETEKEFSNKQLARF 186

Query: 183 RTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235
              ++  K          +A+S+ ++     +  L RPGI LYG     ++ +   ++ +
Sbjct: 187 DCALNKIKKSNFKLPLIHIANSAAVIDLKATYLDLVRPGIILYGLLPSAELKEESFLEPI 246

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  + +I+ +R+      +SYG   K      +AV  IGY DGYP  LS           
Sbjct: 247 LEFKTKIVQLRELPPASTISYGSTYKTEASEKLAVLPIGYKDGYPRLLSNQ--------- 297

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             G+  I+G   PI GK+ M  T+  + +  +  +GD + + G     +I   ++A  + 
Sbjct: 298 --GEVLIRGQRAPIRGKVCMGQTIVSVEEIENAAIGDEVVLIGKQGTAEITAAEIAKLAS 355

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y+++  +     K Y
Sbjct: 356 TISYEIVCNLDRNLKKIY 373


>gi|116872288|ref|YP_849069.1| alanine racemase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123460815|sp|A0AH04|ALR_LISW6 RecName: Full=Alanine racemase
 gi|116741166|emb|CAK20286.1| alanine racemase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 368

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 154/379 (40%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +    L  N    AVVK NAYG G  + A     AG + F V
Sbjct: 6   HRPTWIEIDREAIRANIKNEQHRLPENVALWAVVKANAYGHGIIETAKTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    +   I VL         +    N+   +        +   ++    
Sbjct: 66  AILDEALALREAGFRNDFILVLGATRQEDANLAAKNNISLTVF----REDWLHNLTLEAP 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ S +EA              L  I +H A AD   +     QL+
Sbjct: 122 LRIHLKVDSGMGRLGIRSTEEAKQIEARIALDHQLILEGIYTHFATADQLETSYFEQQLD 181

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F T+++ ++        A+S+  LL P   F   R GIS+YG T  +         ++ 
Sbjct: 182 KFTTILTSFESRPTFVHTANSAASLLQPQMDFDAVRFGISMYGLTPSLEIKNSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGY-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G + PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAADYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++   +  R  + Y
Sbjct: 348 GTINYEVTCLLSDRIPRKY 366


>gi|289523438|ref|ZP_06440292.1| alanine racemase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503130|gb|EFD24294.1| alanine racemase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 362

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 155/370 (41%), Gaps = 24/370 (6%)

Query: 13  LTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71
           L  L++N+  + +  G   +  +VVK N YG+G   IA AL  AG Q F V + +E V L
Sbjct: 3   LENLRHNFDKIKSFVGPRVQVMSVVKANGYGMGIVPIAKALEEAGCQRFAVATPDEAVAL 62

Query: 72  RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQVDT 130
           R    +  + VL            D ++   ++ +             G      +++DT
Sbjct: 63  REAGIKEPLLVLGPSPIEAAGYYVDHDVAAALTDMEFACAASRVAEEKGKVAQLHVKIDT 122

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
           G  R+G   +E               +  I +H A AD+P+   +  Q  RF   +    
Sbjct: 123 GMGRIGFLPEELPHILPKLKGLSCIDIEGIFTHFATADEPNLEYSRWQFRRFMKALDILA 182

Query: 191 --GIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARII 243
             GI+     + +S+GIL  P YH    RPG+ LYG   +D   K   ++ V   +  + 
Sbjct: 183 DFGIKVRLRHVCNSAGILNLPEYHLDAVRPGLILYGMWPSDSCRKPFDLKKVFQIKTEVA 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R    G  V YG +     +  IAV  +GY DGYP  LS           +     IK
Sbjct: 243 ALRTLPLGSGVGYGLRYMTRGEEKIAVLPVGYHDGYPRVLS-----------MRASVLIK 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLV 359
           G   PI+G I MD  M ++T    ++V D   + G     ++  +++A   GT NY++  
Sbjct: 292 GIRAPIVGNICMDQMMVNVTHIPDVKVKDEAVLIGAQGDEEVTTEEIAKIIGTINYEVPN 351

Query: 360 RIGTRYAKFY 369
               R  + Y
Sbjct: 352 LFTPRVPRVY 361


>gi|75765474|pdb|1XFC|A Chain A, The 1.9 A Crystal Structure Of Alanine Racemase From
           Mycobacterium Tuberculosis Contains A Conserved Entryway
           Into The Active Site
 gi|75765475|pdb|1XFC|B Chain B, The 1.9 A Crystal Structure Of Alanine Racemase From
           Mycobacterium Tuberculosis Contains A Conserved Entryway
           Into The Active Site
 gi|5759222|gb|AAD51033.1|AF172731_1 alanine racemase [Mycobacterium tuberculosis]
          Length = 384

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/374 (26%), Positives = 166/374 (44%), Gaps = 26/374 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E + 
Sbjct: 16  VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 75

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVD 129
           LR     A +                 ++   +SS+ Q       +   G +    ++VD
Sbjct: 76  LRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVD 135

Query: 130 TGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG NR G+   +          +  +   +L  ++SH+  AD P   +N VQ +RF   +
Sbjct: 136 TGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFL 195

Query: 187 SHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEA 240
           +  +  G+    A L++SS  +  P+  F L RPGI++YG +         +   +T + 
Sbjct: 196 AQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKC 255

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            + L++   AGE VSYG      RD+ +A+  IGYADG   +L G             + 
Sbjct: 256 AVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRL-----------EV 304

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I G   P +G+I MD  M D+      +  GD   +FGP I       D A   GT +Y
Sbjct: 305 LINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHY 364

Query: 356 DLLVRIGTRYAKFY 369
           +++     R  + Y
Sbjct: 365 EVVTSPRGRITRTY 378


>gi|302333717|gb|ADL23910.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 382

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 167/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 122 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 177

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 178 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 238 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 297 -----------VNVNGHQCEVVGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
             A    T NY++L  +  R  + Y
Sbjct: 344 VAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|227509299|ref|ZP_03939348.1| alanine racemase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191229|gb|EEI71296.1| alanine racemase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 374

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 147/382 (38%), Gaps = 30/382 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              RL I+  A+ NN  +    +        VVK N YG G  ++A    NAG + F V 
Sbjct: 7   RNARLIINQKAIYNNVKNAVTHTQSGTDLFVVVKANGYGHGAVQVARIAENAGAKGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT---FYSKLMSCGV 120
            +EEG++LR       I VL    P    I  D+++   +SS   L              
Sbjct: 67  LLEEGLELRQAGFTEPILVLGITEPTFAPIARDSHISLTVSSEEWLKTAGIILNQQDSKE 126

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQ 178
                L +DTG  R+G    + L        K         I +H A AD         Q
Sbjct: 127 KLHVHLAMDTGMGRIGFQTPDELQEAMLVLKKYQDTFDFEGIFTHFATADSKDDTYFQYQ 186

Query: 179 LERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232
            E ++ +++    +     +A+++  L        + R GIS YG      +     + +
Sbjct: 187 YENYQKMLAVVDKRPKYVHVANTATSLWHKVCGANMVRYGISTYGLNPSGKEITRTPYTL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++ +A +  ++K   G+ + YG   +   D  I    IGYADG+P  + G       
Sbjct: 247 FPAMSFQAGLSYVKKVPKGKSIGYGATYQTKEDEWIGTVPIGYADGFPRKMQGFS----- 301

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                    + G   PI+G++ MD  M  +      +    + I G     +I +DD+A 
Sbjct: 302 -------VLVDGQYCPIVGRVCMDQFMIKLPKQYGTD--TVVTIIGKSGAHEITVDDIAD 352

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
             GT NY+++     R  + Y 
Sbjct: 353 QLGTINYEVVCGFSERLQRKYV 374


>gi|319764875|ref|YP_004128812.1| alanine racemase [Alicycliphilus denitrificans BC]
 gi|330827080|ref|YP_004390383.1| alanine racemase [Alicycliphilus denitrificans K601]
 gi|317119436|gb|ADV01925.1| alanine racemase [Alicycliphilus denitrificans BC]
 gi|329312452|gb|AEB86867.1| alanine racemase [Alicycliphilus denitrificans K601]
          Length = 358

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 162/369 (43%), Gaps = 18/369 (4%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   R   DL AL+ N+    A+ G  + AA +K NAYG G  + A AL       F V 
Sbjct: 2   SRPARADFDLAALRANYAHAKAVHGG-KVAATLKANAYGHGAVECARAL-AGQADAFAVA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
             +E ++LR       I VL G     +  +     L  V+    QL     L   G   
Sbjct: 60  FAQEAMELREAGLTEPILVLEGAFGMDDVALAQRHGLWLVVHQEEQLRMLESLQDRGGGA 119

Query: 123 PYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L++DTG +R G++  +A                 +++HLA AD+P + +   QL 
Sbjct: 120 GVHAWLKIDTGMHRAGVAPGQARALWQRLAACDKVAGITLMTHLASADEPGNPMTGRQLA 179

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
            F        G   S+A+S+G+L     H    RPGI LYG   +   S  +Q V+   +
Sbjct: 180 VFADATQGLPG-PRSIANSAGVLGWKGAHQDWARPGIMLYGADPRGMPSDVLQPVMRLAS 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            + + R    GE + YGG     R + + + A+GYADGYP             V  G   
Sbjct: 239 EVFVERWLAPGEALGYGGSFVADRPTRVGLVAMGYADGYPR-----------VVPSGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G +  I+G++ MDM   D+TD      G  ++++G  + ++ VA A+GT  Y+LL  
Sbjct: 288 AVDGRLTRIIGRVAMDMLTVDLTDLPGAGPGAQVELWGSQVSVNQVAAAAGTIAYELLCN 347

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 348 V-KRVRRVY 355


>gi|260558409|ref|ZP_05830605.1| alanine racemase [Enterococcus faecium C68]
 gi|260075583|gb|EEW63889.1| alanine racemase [Enterococcus faecium C68]
          Length = 373

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I   A+  N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAIETAEAAVAGGASGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
           ++++EGV+LR       I +L  +      +    +L     +   L   + ++      
Sbjct: 66  SNLDEGVELREAGFTQPILILNMVPYDALTVAVAHDLSVTAGTREWLQAAAAVLEKSKLE 125

Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+ DTG  R+G  + +E  +        ++ +   + +H + AD       ++Q
Sbjct: 126 TPLSIHLKADTGMGRIGFCTPEEVKEAAAFIKESRVLEWEGLFTHFSTADQADDTYWNLQ 185

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            ERF  ++     +     +++S+  L        + R G+++YG       + + +P+Q
Sbjct: 186 KERFIEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I I+K  AGE + YG     +    I    IGYADG+P  + G        
Sbjct: 246 PALELVSELIQIKKLPAGEGIGYGETYITSEAEWIGTIPIGYADGWPRKMQGFSL----- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   ++G     +G++ MD  M  +     +  G  + + G     +I + D+A  
Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDIADQ 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++   +G R  + Y
Sbjct: 352 LGTIHYEVACGLGQRIPREY 371


>gi|229827601|ref|ZP_04453670.1| hypothetical protein GCWU000182_02990 [Abiotrophia defectiva ATCC
           49176]
 gi|229788239|gb|EEP24353.1| hypothetical protein GCWU000182_02990 [Abiotrophia defectiva ATCC
           49176]
          Length = 401

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 171/386 (44%), Gaps = 29/386 (7%)

Query: 1   MHSN-EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M S  +    +I+L A++ N+  +    G N + A +VK +AYG G  K+   L   G  
Sbjct: 13  MKSTLKRTWAEINLDAIEYNYKKIKEHIGENVKFAGIVKADAYGHGSVKVGAKLQELGAD 72

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMS 117
              V+S++E ++LR       I +L      Q   +   N+   ++     L + ++ + 
Sbjct: 73  YLAVSSIDEAMELRFNGITMPILILGHTPREQVDRLICFNITQAVTCEAKALEYSAEAVK 132

Query: 118 CGVSHPYALQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPS- 171
           C  +    ++VDTG +RLG        +  ++   N           I +H A +D+   
Sbjct: 133 CKGTLKIHIKVDTGMSRLGYLCEGEHFEHGIEGIVNVCKLSNLDAEGIFTHFAVSDEDGE 192

Query: 172 --SHVNSVQLERFRTLISHYKG------IEASLASSSGILLGPNYHFQLTRPGISLYGGT 223
                   QLE F+ +I+  +       +    A++   +  P+ +  + RPG+ LYG  
Sbjct: 193 ECKEYTDHQLELFKAVITEVEKKSGKAFLLHHCANTGATVNRPDSYMDMVRPGLLLYGYG 252

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
            +  K+  ++ V++ +  +  I+    G  +SYGG    T  + + V   GYADG+   L
Sbjct: 253 -EFAKALGLKPVMSMKTTVSTIKVYPKGTKISYGGIYTTTGKTRMGVVPYGYADGFMRCL 311

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
           S   S  +               V   G+I MDM M D+TD  SI+VG  I+IFG +  +
Sbjct: 312 SNKYSFMTEEGA-----------VRQRGRICMDMCMIDLTDKFSIDVGSEIEIFGENNPI 360

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           + +A  +GT  Y+L+  +  R  + Y
Sbjct: 361 EAMAEMAGTIPYELVCAVSKRVHRIY 386


>gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38]
 gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38]
          Length = 780

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 164/370 (44%), Gaps = 21/370 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L A+ +N +     L  + +   +VK   YG G  +IA  L +  V    V   +E
Sbjct: 420 LEINLDAISHNLNFYKSKLKHDTKIMVMVKAFGYGNGGYEIAKLLEHHKVDYLGVAFADE 479

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPYA 125
           G++LR       I VL        + +   NL P I S+  L  + K+       ++P  
Sbjct: 480 GIELRKAGITTPIMVLNP-ENSSFRAMIAYNLEPEIYSITGLQAFLKIAQEQNISNYPIH 538

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG  + +  +      N    ++  + SHLA +DD   +    +Q +RF  
Sbjct: 539 IKLDTGMHRLGFEMPQMDELVSLLKNNNFIKIKSVFSHLAASDDKKLNEFTQLQFQRFDE 598

Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           + +    +        + ++SGI   P    ++ R GI LYG  +   +   ++ V T +
Sbjct: 599 MYNAIAAVLSYIPIRHILNTSGIFNYPEKQMEMARLGIGLYGIGNSEQELQTLENVSTLK 658

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I  IR+ L GE + Y  +  +T+   +A   IGYADG                   G 
Sbjct: 659 TIISQIREVLPGESIGYSRKYSVTKKMKVATIPIGYADGIKRAWGN----------EKGY 708

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I      ILG I MDM M D+T+  S   GD + +FG + K+ ++A   GT  Y++L 
Sbjct: 709 VIINNEKATILGSICMDMMMVDVTNI-SCNTGDEVIVFGKNPKVTEMASVIGTIPYEILT 767

Query: 360 RIGTRYAKFY 369
            I  R  + +
Sbjct: 768 GISQRVKRIF 777


>gi|318058076|ref|ZP_07976799.1| alanine racemase [Streptomyces sp. SA3_actG]
          Length = 378

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 95/379 (25%), Positives = 158/379 (41%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   +   +  A   AVVK +AYG G    A A   AG     V +  E
Sbjct: 9   RAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPAE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126
            + LR    + R+        G  +   + ++   +S         +   + G +    L
Sbjct: 69  ALALRAAGAEGRMLCWLWTPGGPWRAAIEADIDVSVSGQWALDEVAAAARAAGATARVHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +      N+   +   L ++  + SH ACAD+P     + QL  F 
Sbjct: 129 KADTGLGRNGCQPADWPALVGNALALQAEGLVRVVGLWSHFACADEPGHPSIAAQLTLFE 188

Query: 184 TL--ISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQT 234
            +  ++   G+ A    +A+S   L  P  H+ L RPGI++YG +       +    ++ 
Sbjct: 189 EMTGLAARLGVRAEVRHIANSPATLSLPESHYDLVRPGIAMYGLSPSPTMGTHTDFGLRP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   A + L+++   G  VSYG       D+ + +  +GY DG P   SG         
Sbjct: 249 VMRLVAPLALVKRVPGGHGVSYGHLYVTPGDTTLGLVPLGYGDGIPRHASGS-------- 300

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   + G    + G+I MD  + D+        G    +FGP    +   +D A A+
Sbjct: 301 ---GPVLVNGKWHTVAGRIAMDQFVVDLGGDTPA-PGSEAVLFGPGDRGEPSAEDWARAA 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            +  Y+++ RIG R  + +
Sbjct: 357 DSIVYEIVTRIGARVPRVH 375


>gi|327438475|dbj|BAK14840.1| alanine racemase [Solibacillus silvestris StLB046]
          Length = 372

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 158/385 (41%), Gaps = 30/385 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56
           M++  + R     IDL A+ +N  S+    G   +  AVVK NAYG G  ++A     AG
Sbjct: 1   MNTPIYYRPTKAVIDLQAITHNISSLQNYIGPKIQIIAVVKANAYGHGDVEVAKTAIEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V + +E V +R       I VL              N+I  + S   L    +  
Sbjct: 61  ATMLAVATPDEAVHIRENFKDIDILVLGASPHTFIPFASAENIILTVFSTEWLQLAQQYT 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                    ++VD+G  R+G+S  +E ++      +     +  I +H A AD+  S   
Sbjct: 121 PLLNQLRLHIKVDSGMGRIGVSTKEELMELYTMINSSDDFLVDGIFTHFATADEEDSMYF 180

Query: 176 SVQLERFRTLISHYKGIEA--SLASSS-GILLGPNYHFQLTRPGISLYGGTDK----INK 228
             Q   F+  +           +A+++  ++  P+ H+   R GIS+YG           
Sbjct: 181 DNQATLFKDFLGALPQKPRLVHVANTATALVKDPSLHYDAVRFGISMYGLLPSSYVGTKL 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             P++   + +  ++ I+K  AG+ V YG       D  I    IGYADG    LSG   
Sbjct: 241 PFPIKPAFSLQTELVHIKKMQAGQSVGYGATYTAEEDCYIGTIPIGYADGMIRKLSGQ-- 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344
                     +  + G    I+G+I MD +M  + ++ ++  G+ + + G     +I +D
Sbjct: 299 ----------EVLVGGKRAKIVGRICMDQSMILLPEAYNV--GEEVVLIGCQQQEEITID 346

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           D A    T NY++   I  R  + Y
Sbjct: 347 DWAHKLQTINYEVPCVITARVPRVY 371


>gi|162455533|ref|YP_001617900.1| hypothetical protein sce7251 [Sorangium cellulosum 'So ce 56']
 gi|226711060|sp|A9ESU7|ALR_SORC5 RecName: Full=Alanine racemase
 gi|161166115|emb|CAN97420.1| alr [Sorangium cellulosum 'So ce 56']
          Length = 379

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/386 (25%), Positives = 174/386 (45%), Gaps = 32/386 (8%)

Query: 5   EFLRLKIDLTALKNNWHSM-NALSGNAR--TAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
              R +++L  L++N   +   L+G  +     V+K +AYG G   +A  L  AG+    
Sbjct: 2   RPTRAEVNLAHLRHNLRVLERGLTGATKPQIWGVLKADAYGHGAPAVARTLERAGIPGLC 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-PGQE--KIIFDTNLIPVISSVPQLTFYSKL--M 116
           V  +EE ++LR    +  I V+ G + P ++  + I   +L+PV+    Q+   + +  +
Sbjct: 62  VALLEEAIELRDAGIRLPILVMGGYYGPRRDGFEEIIARDLVPVVYDAGQIERLASVVRL 121

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                    L+VDTG  RLG +  E              +L  +++HLACAD     V  
Sbjct: 122 EQRGRVGVHLKVDTGMGRLGAASSEIEAVLATLAKHPEVKLDGLMTHLACADADDLGVTI 181

Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q+  F  +    K           ++S+ +L  P     + RPG++L+G +     +  
Sbjct: 182 EQMRLFGEIEQRAKSFGLTPRVRHASNSAAMLRLPAALLDIVRPGVALFGISPCAGLAPD 241

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+   + I+ +R    G+ + YG   + +R+S++A   +GYADG    LS       
Sbjct: 242 LKPVIRVRSEIVALRTIAKGDRIGYGHTWQASRESVVATVPMGYADGLSRQLSNR----- 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--------IKL 343
                 G   ++G   PI G ++MD+TM D+TD     +GD +   G          I  
Sbjct: 297 ------GAALVRGQRAPIAGAVSMDLTMLDVTDVPGARLGDEVVFLGTQDGPLGRGTISA 350

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +++A  +GT  +++L  I  R  +FY
Sbjct: 351 EEIAGLTGTIAWEVLTSISRRVPRFY 376


>gi|148984140|ref|ZP_01817435.1| alanine racemase [Streptococcus pneumoniae SP3-BS71]
 gi|147923429|gb|EDK74542.1| alanine racemase [Streptococcus pneumoniae SP3-BS71]
 gi|301800506|emb|CBW33145.1| alanine racemase [Streptococcus pneumoniae OXC141]
          Length = 367

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKVLIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       +N  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLNLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|257456069|ref|ZP_05621272.1| alanine racemase [Treponema vincentii ATCC 35580]
 gi|257446527|gb|EEV21567.1| alanine racemase [Treponema vincentii ATCC 35580]
          Length = 375

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/380 (27%), Positives = 160/380 (42%), Gaps = 26/380 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              +  I L  LK N   +   L    +    VK +AYG G  + A A   AGV    V 
Sbjct: 2   RATKAIIHLDNLKYNITQIKQTLVPETKICLPVKADAYGHGAVRTAIAAIRAGVSYLAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
           SV+EG++LR     A I  L      +   I D  L P++     +   ++       + 
Sbjct: 62  SVQEGIELREAGIVAPIISLSLPILEEIDSIIDYKLEPLVIDEEFINELNRAADAQKKTV 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQL 179
              L++DTG +R+G    EA+         K  +L  + +H A AD   +        QL
Sbjct: 122 AVHLKIDTGMSRIGCKPSEAVKLATQIVRAKHLRLQGVATHFAVADSDSESDRAFTKNQL 181

Query: 180 ERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PM 232
           ERF   +   +  GI       A+S  + L P   F + RPG+  YG     N ++   +
Sbjct: 182 ERFTDAVEAIRQTGIHIPLVHAANSGAVQLLPEARFDMVRPGLLAYGYLPIRNAAYTIDV 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+    +++LI++  AG  VSYG      +D+ IA   IGYADG    LS        
Sbjct: 242 KPVMELVTQVVLIKQIRAGTCVSYGRNWTAPQDTYIATLPIGYADGLRRALS-------- 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI---KLDDVALA 349
               G K  I     PI+G+I MD  M D+     ++  D + IFGP+        +A  
Sbjct: 294 ---PGLKVRIGSEFFPIVGRICMDQCMIDLGAHPWVQRWDEVCIFGPNPQDNSAQTLADI 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           +GT  Y++   I  R  + +
Sbjct: 351 AGTIPYEITCGIHKRVPRVF 370


>gi|169334902|ref|ZP_02862095.1| hypothetical protein ANASTE_01308 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257640|gb|EDS71606.1| hypothetical protein ANASTE_01308 [Anaerofustis stercorihominis DSM
           17244]
          Length = 377

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 156/370 (42%), Gaps = 20/370 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +KI+L  L NN+  +       +   V+K +AYG G E  A  L + G   F V+SV E 
Sbjct: 8   VKINLDNLINNYRVIKNKVKGKKVIPVIKADAYGHGAEICAKILMSEGADLFAVSSVYEA 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQ 127
           + LR Y   A + +L  +   +   I D ++IP I ++        +           ++
Sbjct: 68  MCLRDYGIDADVLILGYVPDRKINKIIDNDIIPTIYNLDFAKKLNEEAGKKNKKIKVHIK 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NRLG +  E  +               + SH A +D+     ++ Q E F   I 
Sbjct: 128 INTGMNRLGFNKDEIDEAFKLLKGLDNLIYEGLFSHFATSDEVDKSYSNKQFEIFDYAIK 187

Query: 188 HYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVTAEA 240
             K  +       +A+S+ I     Y     R GI LYG      K   +P + V++   
Sbjct: 188 KSKEYDLGVTINHIANSAAITDLDEYSLDAVRAGIVLYGVYPSEVKPEINPYKPVMSFYT 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I  I      E V YG        + +AV  +GYADGY   LS             G+ 
Sbjct: 248 TITNIFHIDKDETVGYGRTFTAKEKTKVAVMCVGYADGYNRKLSN-----------KGEV 296

Query: 301 FIKGY-MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            I       ++G + MDMTM +I +   IE+GD ++IFG +I +  +A    T  Y+LL 
Sbjct: 297 LINNKYKAKVIGNVCMDMTMLEIPEEADIEIGDNVEIFGENINISSLAEICETIPYELLC 356

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 357 CINKRVKREY 366


>gi|149377612|ref|ZP_01895350.1| alanine racemase [Marinobacter algicola DG893]
 gi|149358085|gb|EDM46569.1| alanine racemase [Marinobacter algicola DG893]
          Length = 366

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/366 (27%), Positives = 169/366 (46%), Gaps = 20/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +ID  AL++N+     L+  AR  AV+K + YG G  ++A AL  +    F V  +EE 
Sbjct: 7   ARIDTRALRHNYRLACRLASPARAMAVIKADGYGHGIREVARAL-ASDAPKFAVACLEEA 65

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + +R       + +L G+H  G            V+ S  QL +  +           ++
Sbjct: 66  LAIREAGVDHPVVLLQGMHSAGDVATCVCEGFEVVVHSGYQLDWLDQADE---RPTVWVK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFRTLI 186
           V+TG NRLG +     D          G+ ++  ++H ACADD S      Q   F   +
Sbjct: 123 VNTGMNRLGFAPSVLADVMARLDTIGAGETVAGFVTHFACADDISRDDTDQQTRVFSEAV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEARII 243
             +  +E S ++S+   L     F  TRPGI LYG +  + K+ P    + V+T EA + 
Sbjct: 183 VDWPKLEKSASNSAAHFLPAQPSFDWTRPGIMLYGASPTLGKTGPELGLEAVMTLEAPLT 242

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R    GE V YG      +++ + + AIGY DGYP                    ++ 
Sbjct: 243 AVRTLKPGESVGYGYSWTAIQETRMGIVAIGYGDGYPRHAG-----------TDTPAWVG 291

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  + ++G+++MDM   D+T +     GD ++++G ++ +D+VA  +GT  Y+LL  I  
Sbjct: 292 GNRIRLIGRVSMDMLAVDLTGAPEACPGDLVELWGRNVSVDEVAQHAGTIGYELLTGITA 351

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 352 RVPRLY 357


>gi|167758273|ref|ZP_02430400.1| hypothetical protein CLOSCI_00611 [Clostridium scindens ATCC 35704]
 gi|167664170|gb|EDS08300.1| hypothetical protein CLOSCI_00611 [Clostridium scindens ATCC 35704]
          Length = 388

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 167/385 (43%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQ 58
           M++   +  ++DL A++ N   M   +    +  +V+K + YG G  +IA  L     + 
Sbjct: 1   MNNYTRICARVDLDAIEYNMEMMKKNIKEGVQMISVIKTDGYGHGALQIARMLEGKEYLW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
            + V + +E V LR    +  I VL  I P Q K + +  +   + +       S+L  S
Sbjct: 61  GYAVATPDEAVVLRKGGIKKPILVLGCIFPDQRKAMIENEIRMTVYTEEMAKEVSELAGS 120

Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G      +++DTG +RLG  ++ E++D   +        +  + +H A AD+       
Sbjct: 121 MGKQAYIHIKLDTGMSRLGFLIEDESVDKIESISRMPNLIMEGMYTHFAKADETDKTFTH 180

Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            Q++ +  +                ++S+GI+     +  L R GIS YG         +
Sbjct: 181 SQMDGYLWMKKALDERRVTFKFYHCSNSAGIIDVKEANLDLVRAGISTYGLYPSSEVKKE 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           + P++  +   + +  ++    G  VSYGG     R + IA   +GY DGYP +LS    
Sbjct: 241 NVPLKPAMELISHVAHVKWVKEGTPVSYGGTFITKRPTKIATIPVGYGDGYPRSLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G   PILG++ MD  M D T+   ++  D + + G D    + ++
Sbjct: 298 --------KGYVLIHGKKAPILGRVCMDQFMVDATEIDDVKYADKVTLVGCDGNEKLPVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            ++  SG  NY+ +  +G R  + +
Sbjct: 350 TLSDLSGRFNYEFVCDLGKRIPREF 374


>gi|332304651|ref|YP_004432502.1| alanine racemase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171980|gb|AEE21234.1| alanine racemase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 375

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/383 (28%), Positives = 183/383 (47%), Gaps = 31/383 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN----------ARTAAVVKDNAYGLGCEKIAPALYN 54
             + + +DL A+++N++   +L             ++T AV+K +AYG G    A AL +
Sbjct: 3   RPISITVDLNAIRHNFNYAQSLGAKPKNGDSLDNVSQTMAVIKADAYGHGAVATARAL-D 61

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYS 113
                  V+S+EE V LR    +  I +L G     E  + D  NL  V+ +  Q+    
Sbjct: 62  GKATLLAVSSIEEAVSLRQNHIKTPILLLEGCFCSSELSVLDDLNLQVVLHNQHQIEELL 121

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
              S        L++DTG +RLG+S  +A        N K  +  ++++H A +D P+  
Sbjct: 122 N-TSLDEPADVWLKIDTGMHRLGISAADANHTYQTLANSKNVRSIVLMTHFAMSDQPNHT 180

Query: 174 VNSVQLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK- 228
               Q E F  L+         I  S A+S+ ++  P  H    RPGI LYG +   ++ 
Sbjct: 181 FFKRQHEDFHNLVKALSTTDQLIPNSAANSAAVMSAPESHGTWNRPGIMLYGISPFDHEN 240

Query: 229 --SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
             S P+   +   ++II +R+  AGE V YG     T+ S+IA  A GY DGYP      
Sbjct: 241 TFSAPLIPAMQFHSKIIALRQVNAGESVGYGATWTATQPSIIATVAAGYGDGYPR----- 295

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                 +   G    I G + P+ G+++MDM   D+T    +++GD ++++G ++ +++V
Sbjct: 296 ------TAKSGTPVMINGQIAPLAGRVSMDMLCVDVTKLNKVKIGDDVELWGKELSVNEV 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + T  Y+L+ R+ TR  + +
Sbjct: 350 AQWADTLGYELVTRMPTRAKRIF 372


>gi|269121335|ref|YP_003309512.1| alanine racemase [Sebaldella termitidis ATCC 33386]
 gi|268615213|gb|ACZ09581.1| alanine racemase [Sebaldella termitidis ATCC 33386]
          Length = 356

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/367 (26%), Positives = 167/367 (45%), Gaps = 17/367 (4%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
               +I+L  L++N + +  ++G++     +K +AYG G  ++   L + G++   V + 
Sbjct: 2   RSWAEINLDNLRHNINILKTIAGDSMLLPAIKADAYGHGIAEVFNVLISEGIKWVGVATF 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            E  KLR       I V   +     +   D N+   ++S+ ++ F   L    ++    
Sbjct: 62  NEAEKLRKLDKATNILVFGPVETEDMRKAIDMNIAFPLTSMDEIDF---LNENNLAPRVH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VDTG  R+G S     +    +       +  I SHL+ A D S      QLE F+ +
Sbjct: 119 LAVDTGMGRIGFSRNSLDEVKRKTEENSKINVEGIFSHLSSA-DTSPEYTKRQLEDFKKI 177

Query: 186 ISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEARII 243
           +  +  I+   + +S G +      + + RPGI LYGG  K N  S+  + V+  ++R+ 
Sbjct: 178 VEKFPKIKYRHILNSFGSMQFSESKYDIIRPGIILYGGIKKENAFSYDFKPVMALKSRVS 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            I+K      +SY  + +      IA  +IGYADG    L+G            G+  I 
Sbjct: 238 FIKKLENNSFISYNRKYEGRAGEKIATVSIGYADGIRRDLTG-----------KGEVVIN 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                I G I MD  M  I + L + VGD ++ FG +I +++VA   GT +Y++L  IG 
Sbjct: 287 NRRCRIAGTICMDQLMVSIPEDLEVNVGDTVEFFGENIHIEEVAEKCGTISYEILCGIGQ 346

Query: 364 RYAKFYT 370
           R  + Y 
Sbjct: 347 RVTRIYV 353


>gi|239637370|ref|ZP_04678352.1| alanine racemase [Staphylococcus warneri L37603]
 gi|239596970|gb|EEQ79485.1| alanine racemase [Staphylococcus warneri L37603]
          Length = 382

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 166/382 (43%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L IDL A+ +N+ + + L  N    +V+K N YGLG  +IA  L   G   
Sbjct: 2   SEKFYRSTYLNIDLNAILSNYQTFDKLHANKTVISVIKANGYGLGSVRIAQHLMENGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSC 118
           F V +++E ++LR++  +A+I +L  I P          +   + S          +   
Sbjct: 62  FAVATLDEAIELRMHGIKAKILILGVIPPKDINKAIQHRVALTVPSKSWLKESIKNISDE 121

Query: 119 GVSHPY-ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                +  L++DTG  RLG+  ++E  +               + +H ACAD+P   + +
Sbjct: 122 NEKALWLHLKLDTGMGRLGMKDVEEYKEVVDIISKYDQLVFEGVYTHFACADEPGDDM-A 180

Query: 177 VQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231
            Q ++F+ L+   +        +S+G LL         R GISLYG         N    
Sbjct: 181 TQYQKFKELVEQVEKPHYIHTQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKENVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      + I+  +    G+ VSYG     T  + IAV  IGYADGY  ++ G      
Sbjct: 241 LKPSAQLVSEIVQTKTLNVGDSVSYGSTYTATEPTRIAVLPIGYADGYLRSMQGS----- 295

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                     + G    ++G++ MD TM  I D+  ++VGD + +    +     ++ +A
Sbjct: 296 -------YVNVNGQQCEVIGRVCMDQTMVKIPDT--VKVGDKVILLDNHVDTEQSVEALA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L  +  R  + Y
Sbjct: 347 KQQNTINYEVLCNLSRRLPRIY 368


>gi|49475978|ref|YP_034019.1| alanine racemase [Bartonella henselae str. Houston-1]
 gi|49238786|emb|CAF28055.1| Alanine racemase [Bartonella henselae str. Houston-1]
          Length = 372

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 189/364 (51%), Gaps = 14/364 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID+ A+  N+ ++         +AVVK NAYGLG  KIAPALY AG + FFV  +EE 
Sbjct: 19  ATIDVRAIVANYRTLAQHVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEA 78

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++L+   P+   I +L G     E+ +  + +IP+++S   +  +  L        P  +
Sbjct: 79  LQLKAVLPENVMIALLNGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAII 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVDT  +RLGL  +E      N    +  ++  I+SHLA  +D S   N+ QL  F+ ++
Sbjct: 139 QVDTNMSRLGLDKKELQKLIKNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVL 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     + S A+S GI LG +++F L RPGI+LYG         P++ VV  EA+++  R
Sbjct: 199 AQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPHGKHPTPLKAVVKVEAQVLQSR 258

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V Y       R S +A  +IGYADG+P  LS             G  +  G+ 
Sbjct: 259 FIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSN-----------KGTVYFNGHK 307

Query: 307 VPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +PI+G I+MD  + D TD     + GD++++ GP   L+ V+  + T  +++L  +G RY
Sbjct: 308 LPIVGHISMDSIIVDATDLDKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKRY 367

Query: 366 AKFY 369
            + Y
Sbjct: 368 KRIY 371


>gi|61218413|sp|P0A4X2|ALR_MYCTU RecName: Full=Alanine racemase
 gi|61218415|sp|P0A4X3|ALR_MYCBO RecName: Full=Alanine racemase
          Length = 386

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/374 (26%), Positives = 166/374 (44%), Gaps = 26/374 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E + 
Sbjct: 18  VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 77

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVD 129
           LR     A +                 ++   +SS+ Q       +   G +    ++VD
Sbjct: 78  LRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVD 137

Query: 130 TGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG NR G+   +          +  +   +L  ++SH+  AD P   +N VQ +RF   +
Sbjct: 138 TGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFL 197

Query: 187 SHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEA 240
           +  +  G+    A L++SS  +  P+  F L RPGI++YG +         +   +T + 
Sbjct: 198 AQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKC 257

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            + L++   AGE VSYG      RD+ +A+  IGYADG   +L G             + 
Sbjct: 258 AVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRL-----------EV 306

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I G   P +G+I MD  M D+      +  GD   +FGP I       D A   GT +Y
Sbjct: 307 LINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHY 366

Query: 356 DLLVRIGTRYAKFY 369
           +++     R  + Y
Sbjct: 367 EVVTSPRGRITRTY 380


>gi|288962767|ref|YP_003453061.1| alanine racemase [Azospirillum sp. B510]
 gi|288915033|dbj|BAI76517.1| alanine racemase [Azospirillum sp. B510]
          Length = 375

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 188/369 (50%), Gaps = 18/369 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +      A  +AVVK +AYGLG  ++ PAL  AG + F V   EE 
Sbjct: 16  LTVDLGAVVANWAQLRDRVAPAECSAVVKADAYGLGVARVVPALAAAGCRTFVVAQFEEA 75

Query: 69  VKLRLY----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           + +R       PQA++F L G+ PG E       ++PV++ +  +  +     S G   P
Sbjct: 76  LAVRRALEPVAPQAQVFSLGGMPPGCEGEFLANRILPVLNHLSGIASWRAFAASRGEVLP 135

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             + +DTG NRLGL   E  D   +    +   +   ++HLACA+D  + +N  QL+RFR
Sbjct: 136 AVVHIDTGMNRLGLGPDELDDLAAHPEWLEGIDVRYWMTHLACAEDFDNPMNGEQLDRFR 195

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
             ++     +AS A+SSGI  G +YHF L RPG +LYG        +PM+  V  +AR++
Sbjct: 196 DALARLPKAKASFANSSGIFHGKDYHFDLARPGCALYGVNPTPRLPNPMRGTVRLDARLL 255

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   +   V Y    K+T    IA   IGYADGY  +L G            G  F+ 
Sbjct: 256 QVRNCASPMTVGYAAAHKVTGPVRIATIGIGYADGYMRSLGG-----------KGHVFVD 304

Query: 304 GYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G   PI+G+I+MD+   D+T         G  +++ GP+  +D VA  +GT  Y+++  +
Sbjct: 305 GVAAPIVGRISMDLITIDVTGLPESVAHAGRMVELIGPNRPVDRVAEEAGTIGYEIMTSL 364

Query: 362 GTRYAKFYT 370
           G RY + Y 
Sbjct: 365 GRRYHRVYV 373


>gi|39936148|ref|NP_948424.1| alanine racemase [Rhodopseudomonas palustris CGA009]
 gi|39650003|emb|CAE28526.1| putative alanine racemase [Rhodopseudomonas palustris CGA009]
          Length = 413

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/364 (35%), Positives = 180/364 (49%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  +  A VVK +AYG G   +  AL  AG + FFV ++ E 
Sbjct: 36  LTIDLDALVANWRKLEKTAIPSECAGVVKGDAYGCGAGPVTKALLAAGCKTFFVATLSEA 95

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
           + +R   P A ++VL G  P         N  PVI  + +L  +       G     AL 
Sbjct: 96  LVVREAAPNATLYVLDGFFPNSGDEFAKLNCQPVIGDLYELAEWDVFCRRTGWRGGAALH 155

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLGL++ EA            G ++L+ISHLACAD  +  +N+ Q   FR +  
Sbjct: 156 IDTGMSRLGLTIVEAQGIVPRIVAGDHG-ITLVISHLACADLVNHQLNAKQAAAFREIAG 214

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSGI LG  + F L RPG +LYG        +PMQ VV  +ARI+ +R 
Sbjct: 215 QFTGVSASLSASSGIFLGSQFAFDLVRPGAALYGINPTPEADNPMQPVVDLKARIVQVRS 274

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YG      R S IAV + GYADGY       D         G    I G   
Sbjct: 275 VERGDTVGYGATWSARRPSKIAVVSAGYADGYFRAAGSSDGTR------GADVIIAGQRC 328

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI G+I+MD+   DITD    +   G    + G  I +D++    GT  Y++L  +G RY
Sbjct: 329 PIAGRISMDLLAVDITDLPANAARRGMMATLIGDGITVDELGHHFGTIGYEVLTSLGRRY 388

Query: 366 AKFY 369
            + Y
Sbjct: 389 TRIY 392


>gi|206889591|ref|YP_002248188.1| alanine racemase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|259710075|sp|B5YIM9|ALR_THEYD RecName: Full=Alanine racemase
 gi|206741529|gb|ACI20586.1| alanine racemase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 363

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/379 (27%), Positives = 173/379 (45%), Gaps = 36/379 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA----RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           + FL+ +I+L +L +N+  + A   N     +  A+VK +AYG G  ++A      GV  
Sbjct: 2   SRFLQAEINLKSLIHNFSKIKAHLRNTRVSCKIIAIVKADAYGHGAVEVARVFGLLGVDY 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
             V   EE + LR    +  I VL      + + +F  NLIPVI    Q  F SK     
Sbjct: 62  LGVAFSEEAIVLREAGIKVPIIVL---FDREIEGVFKYNLIPVIFDYRQAEFLSKEASRR 118

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           GV  P  ++V+TG  RLG+  +   +           ++  ++SH + A+         Q
Sbjct: 119 GVILPVHIKVETGMGRLGI-YENPCETIKKIAQLDNLKIDGVMSHFSRAE--DLEWTQEQ 175

Query: 179 LERFRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +++F  +      +       +A+S G L      F   RPG+ LYG       +     
Sbjct: 176 MKKFSKIREFLHNLGMKPLFHIANSQG-LNYKEALFDAVRPGLMLYGY-----GAEGFIP 229

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T + +++ IRK   G  +SYGG     +DSLI V  +GYADGY  +LS          
Sbjct: 230 CMTVKTKLLDIRKLPKGTPISYGGTFVTKKDSLIGVIPVGYADGYFRSLSN--------- 280

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
               +  ++G  VP++G + MD+TM D+TD   +++ D + + G     +I    +A  +
Sbjct: 281 --KAEVIVRGKRVPVVGTVCMDLTMIDLTDIQEVQIDDEVILLGKTGSEEITASHIAQWA 338

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT  Y++L   G R  + Y
Sbjct: 339 GTIPYEVLTSFGGRARRKY 357


>gi|308187068|ref|YP_003931199.1| alanine racemase 2, catabolic [Pantoea vagans C9-1]
 gi|308057578|gb|ADO09750.1| alanine racemase 2, catabolic [Pantoea vagans C9-1]
          Length = 356

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 166/370 (44%), Gaps = 26/370 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   I+  AL++N   +   +  +R  +VVK NAYG G E++  AL       F + 
Sbjct: 2   SRPIVATINQQALRHNLTVVRQAAPASRVWSVVKANAYGHGIERVREALSA--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G   P   ++I    L   + S  Q      L S  +S 
Sbjct: 60  NMEEAILLREQGWKKPILLLEGFFQPEDLQLIDRYRLTTSVHSNWQ---IKALASASLSA 116

Query: 123 PYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           P    L++++G NRLG   ++                  +++H A A++P   +  +Q  
Sbjct: 117 PVDIYLKMNSGMNRLGFRPEQVSGAWQKLRALSNVGEMTLMAHFADAENPQGLIAPLQ-- 174

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R     +       SL++S+  L  P  HF   RPGI LYG +   +        ++ V+
Sbjct: 175 RVEQAAAGL-NCPRSLSNSACTLWHPEAHFDWVRPGIILYGASPSGDWQDIAGSGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II +++  AG+ V YG +   +    I V A GYADGYP                
Sbjct: 234 TLSSEIIAVQQLQAGDGVGYGYRYHASTAQRIGVVACGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G M  ++G ++MDM   D+T      +G  ++++G  +K+D VA A+GT  Y+
Sbjct: 283 GTPVCVDGVMTQVVGAVSMDMITVDLTPCPQAGIGSSVELWGEQVKIDQVAKAAGTVGYE 342

Query: 357 LLVRIGTRYA 366
           L+  +  R  
Sbjct: 343 LMCALAPRVP 352


>gi|254282682|ref|ZP_04957650.1| alanine racemase [gamma proteobacterium NOR51-B]
 gi|219678885|gb|EED35234.1| alanine racemase [gamma proteobacterium NOR51-B]
          Length = 351

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/367 (29%), Positives = 177/367 (48%), Gaps = 19/367 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    L IDL AL +N     +L+  +R  AV+K +AYG G    A AL       F V 
Sbjct: 2   SRPTLLSIDLDALVHNAKLCQSLAAPSRFMAVIKADAYGHGAVPCARALRGI-ADAFAVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            VEE V+LR       I V+ G+    + + I +  L PVI S  QL + S         
Sbjct: 61  LVEEAVELRAAGISEPILVMEGLFSADDMRHIVEHKLWPVIHSRHQLDYLS---PEHHGT 117

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P  L++DTG +RLG+  ++               ++ ++SHL  A++P + ++  Q++ +
Sbjct: 118 PLWLKIDTGMHRLGIEPEKLPQMLSRIRELGFSDIT-LMSHLGDAENPDTALSQRQIDAW 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           + +   +  +  SL +S+ +           R G  LYGG    N   P++ V++ ++ +
Sbjct: 177 QNITGQHSSV-TSLCNSAAVAQRSVPESSWVRAGYMLYGGQTTPN-PLPLKPVMSFQSAV 234

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + +R   AGE V YGG+    R S+IA  A GYADGYP +              G    I
Sbjct: 235 MALRTIAAGETVGYGGRWCAQRPSVIATVAAGYADGYPRSA-----------EDGTPVNI 283

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G + P++G+++MDM   D+TD   +++G    ++G    +DDVA  +GT  Y+L  R+ 
Sbjct: 284 GGEIAPLVGRVSMDMVTVDVTDLPGVKIGTPALLWGASPTIDDVANRAGTIGYELTARMP 343

Query: 363 TRYAKFY 369
            R  + Y
Sbjct: 344 PRTPRTY 350


>gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
 gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
          Length = 821

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 151/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRNKLKPETKIVCMVKASAYGAGSFEIAKTLEDQRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPYA 125
           G  LR     + I ++        K +FD  L P + S   L    K        + P  
Sbjct: 523 GADLRKAGINSSIIIMNP-EITAFKTMFDYRLEPEVYSFHLLEELIKAAEREGVSNFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFRT 184
           +++DTG +RLG +  E          +       + SHL     +        Q+E F  
Sbjct: 582 IKIDTGMHRLGFAPSEIPQLVQRLQKQSAVIPRSVFSHLVGSDAERFDAFTRHQIETFEA 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             +  +      I   + +++GI   P   F + R GI LYG     NK   +  V T +
Sbjct: 642 ASTTLQEGFKHKIIRHICNTAGIERYPGAQFDMVRLGIGLYGVDPFTNK--MLHNVTTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I +  A E V Y  +  LTRDS IA   IGYADG    L                
Sbjct: 700 TTILQIHEVPADETVGYSRKGVLTRDSRIAAIPIGYADGLNRHLGNGH----------AY 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD   IFG D+ +  ++    T  Y++L 
Sbjct: 750 CLVNGQKAPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSDILETIPYEILT 808

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 809 SVSNRVKRVY 818


>gi|160915859|ref|ZP_02078067.1| hypothetical protein EUBDOL_01881 [Eubacterium dolichum DSM 3991]
 gi|158432335|gb|EDP10624.1| hypothetical protein EUBDOL_01881 [Eubacterium dolichum DSM 3991]
          Length = 382

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/390 (26%), Positives = 166/390 (42%), Gaps = 31/390 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           + SN    L+I ++ +++N   +  L     +   +VK NAYG G    A  L   G+  
Sbjct: 2   LTSNTRSWLEIHVSRIEHNVAEIQKLLLGTNKIMGIVKANAYGHGDVVCAKELERIGIDF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           F V+SV+E + LR     + I +L    P    ++    L   I S+      +   ++ 
Sbjct: 62  FGVSSVDEALSLREGGISSPILILGYTPPVHFPLLKKYRLTQTILSLEYAKKLNAYALAH 121

Query: 119 GVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSH-- 173
                  +++DTG +R+G+  Q     ++     +  K      I SH   +DD      
Sbjct: 122 DECIDVHVKLDTGMSRIGIVTQSHAYHIEEVKAVYALKGLHACGIFSHFPVSDDLGEDAQ 181

Query: 174 -VNSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225
                Q+E F  +++  K  GIE     + +S GIL  P+  +   RPG+   G T    
Sbjct: 182 AFTKHQIELFEQVLADLKQAGIEVGLRHIQNSYGILNYPDLDYDYARPGLLWMGITSDDE 241

Query: 226 --INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
             I  +     V+  +A + L++    G  VSYG   K +    IA  ++GYADGYP +L
Sbjct: 242 IAIKTNPDFLPVMEWKANVSLVKTIEKGVTVSYGRHYKASETRRIATLSVGYADGYPRSL 301

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
           S                 I G    I+G I MD  M D++D   ++ GD   +FG D   
Sbjct: 302 SNTH----------AYVLIHGKRAEIIGNICMDQMMVDVSDIEDVKEGDVATLFGCDGEE 351

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            + +D ++  + T N + L RI  R  + Y
Sbjct: 352 CLSIDTLSRNAHTINNETLCRISARVPRIY 381


>gi|302519607|ref|ZP_07271949.1| alanine racemase [Streptomyces sp. SPB78]
 gi|302428502|gb|EFL00318.1| alanine racemase [Streptomyces sp. SPB78]
          Length = 378

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 157/379 (41%), Gaps = 29/379 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL AL+ N   +   +  A   AVVK +AYG G    A A   AG     V +  E
Sbjct: 9   RAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPAE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126
            + LR    + R+        G  +   + ++   +S         +   + G +    L
Sbjct: 69  ALALRAAGAEGRMLCWLWTPGGPWRAAIEADIDVSVSGQWALDEVAAAARAVGATARVHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G    +      N+   +   L ++  + SH ACAD+P     + QL  F 
Sbjct: 129 KADTGLGRNGCQPADWPALVGNALALQAEGLVRVVGLWSHFACADEPGHPSIAAQLTLFE 188

Query: 184 TL--ISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQT 234
            +  ++   G+ A    LA+S   L  P  H+ L RPGI++YG +            ++ 
Sbjct: 189 EMTGLAARLGVRAEVRHLANSPATLSLPESHYDLVRPGIAMYGLSPSPAMGTHTDFGLRP 248

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   A + L+++   G  VSYG       D+ + +  +GY DG P   SG         
Sbjct: 249 VMRLVAPLALVKRVPGGHGVSYGHLYVTPGDTTLGLVPLGYGDGIPRHASGS-------- 300

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   + G    + G+I MD  + D+        G    +FGP    +   +D A A+
Sbjct: 301 ---GPVLVNGKWHTVAGRIAMDQFVVDLGGDTPA-AGSEAVLFGPGDRGEPSAEDWARAA 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            +  Y+++ RIG R  + +
Sbjct: 357 DSIVYEIVTRIGARVPRVH 375


>gi|225567900|ref|ZP_03776925.1| hypothetical protein CLOHYLEM_03973 [Clostridium hylemonae DSM
           15053]
 gi|225163301|gb|EEG75920.1| hypothetical protein CLOHYLEM_03973 [Clostridium hylemonae DSM
           15053]
          Length = 388

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 165/385 (42%), Gaps = 27/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-Q 58
           M +   +  +IDL A++ N   M   +   A+   VVK + YG G  +IA  L       
Sbjct: 1   MKAYNRVCARIDLDAVEYNIEMMKNNVRDGAKMLGVVKTDGYGHGAVQIAKMLSPKDYMW 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
            F V +++E V LR    +  I VL  I P Q + +   ++   + +       S+L   
Sbjct: 61  GFAVATLDEAVVLRHGGIEKPILVLGCIFPDQREDMIKHDIRMTLYTEEMAREVSELAVK 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G      +++DTG +RLG  + +EA D            +  + +H A AD+       
Sbjct: 121 IGKQAYIHIKLDTGMSRLGFLIGEEAADIIERISKMPNLVMEGMYTHFAKADEIDKSFTG 180

Query: 177 VQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            Q+  +  +    +           ++S+GI+  P  +  L R GIS YG         +
Sbjct: 181 KQIRNYVWMKETLEKRGVAFTYYHCSNSAGIIDVPEANMDLVRAGISTYGLYPSEEVHKE 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           + P++  +   + +  ++   AG  VSYGG     R + IA   +GY DGYP +LS    
Sbjct: 241 NVPLKPAMELISHVAHVKWVDAGTPVSYGGTYITDRRTKIATIPVGYGDGYPRSLSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I G   PILG++ MD  M D T+   ++  D + + G D    + ++
Sbjct: 298 --------KGYVLIHGKKAPILGRVCMDQFMVDATEIDDVKYADKVTLVGNDGGEKLPVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            ++  SG  NY+ +  +G R  + +
Sbjct: 350 VLSGLSGRFNYEFVCDLGKRIPREF 374


>gi|296445363|ref|ZP_06887321.1| alanine racemase [Methylosinus trichosporium OB3b]
 gi|296257124|gb|EFH04193.1| alanine racemase [Methylosinus trichosporium OB3b]
          Length = 380

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/370 (35%), Positives = 193/370 (52%), Gaps = 12/370 (3%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     L +DL AL  NW  + A +  A  AAVVK +AYG+G E    AL  AG + FFV
Sbjct: 17  ARAVATLCVDLAALVANWRLLAARAPGADCAAVVKADAYGIGLEPATRALAAAGCRTFFV 76

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
            +  EG +LR   P+A ++VL G+  G    +    L PV++S+ ++  +     S G  
Sbjct: 77  ATAGEGERLRAVAPRAIVYVLEGLPQGGAFTLAAARLRPVLASLEEIGEWGAFGRSIGRR 136

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P ALQ+DTG NRLGLS +EA      + +    +L+L++SH  CA  P    N+ Q+  
Sbjct: 137 LPAALQLDTGMNRLGLSPREAPAAAAAAQD---IELTLVMSHFICAQWPDDPRNARQIAA 193

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           F   +  + G  ASL +SSG+ L    H  L RPG +LYGG       +PM+ VV  EA 
Sbjct: 194 FEAALGCFPGAPASLCNSSGVFLSEKPHHDLLRPGYALYGGNPTPLCPNPMRPVVRLEAS 253

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ +R+  AGE V Y G     R + +A   +GY DG P   S            G +  
Sbjct: 254 VLAVREIAAGETVGYDGVWTAARPTRLATLGLGYGDGLPAGASSGPGR------AGAEAV 307

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           I GY  P++G+++MD  M D+TD     +  G   +I G  I +D++A  SGT  Y++L 
Sbjct: 308 IGGYRCPLVGRVSMDFVMLDVTDIPEAIVHRGASAEILGETIGVDELAARSGTIGYEILT 367

Query: 360 RIGTRYAKFY 369
           R+G RY + Y
Sbjct: 368 RLGRRYERRY 377


>gi|74318118|ref|YP_315858.1| alanine racemase [Thiobacillus denitrificans ATCC 25259]
 gi|123611457|sp|Q3SH36|ALR_THIDA RecName: Full=Alanine racemase
 gi|74057613|gb|AAZ98053.1| alanine racemase [Thiobacillus denitrificans ATCC 25259]
          Length = 367

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 164/367 (44%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  I   A+ +N       +G AR  AVVK NAYG G    + AL   G    F V 
Sbjct: 2   RPIKASISADAMAHNLRVARRHAGAARVFAVVKANAYGHGL---SRALRAFGAADGFAVL 58

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE   LR       I +L GI   G+     + +L PV+    QL +  +      + 
Sbjct: 59  TLEEAASLRQMGVDKPILLLEGIFDAGEIAACAELDLWPVLHHARQLDWLEQQRPA-RAL 117

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+ D+G +RLG  L E  +               +++H A ADD +    + QL+ F
Sbjct: 118 EVFLKFDSGMHRLGFPLAEHAEVVARVRALAGVARVTLMTHFAQADDSAG--VAWQLQPF 175

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAE 239
           R  +  + G+  S A+S+ ++  P       RPGI LYG +   +       ++  +T  
Sbjct: 176 REALDGH-GLPWSSANSAALMRYPETVGDWVRPGIMLYGASPFTDVPASGLGLEPAMTLR 234

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   AGE + YG   +  +     V A GYADGYP                G  
Sbjct: 235 SEIIAVQTLAAGEGIGYGQTFRADKPMRAGVVACGYADGYPRHA-----------PTGTP 283

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     LG+++MDM   D+++  +  VG  + ++G  + +DDVA A+GT++Y+LL 
Sbjct: 284 VVVDGRRTRTLGRVSMDMLCVDLSECPAAGVGSAVVLWGDGLPVDDVAAAAGTSSYELLC 343

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 344 ALAPRVP 350


>gi|323526510|ref|YP_004228663.1| alanine racemase [Burkholderia sp. CCGE1001]
 gi|323383512|gb|ADX55603.1| alanine racemase [Burkholderia sp. CCGE1001]
          Length = 356

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 156/367 (42%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   I  +AL NN       +  ++  AVVK NAYG G  +  P L       F +  
Sbjct: 3   RPLSATIHTSALANNLAVARRYAPRSKIWAVVKANAYGHGLARAFPGLRA--TDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE VKLR       I +L G   P    +I   +L   + S  QL    ++        
Sbjct: 61  LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRML-EMARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +   +      +++H + AD       + Q+E F 
Sbjct: 120 IQLKMNSGMNRLGYTPEKFRAAWERARACQGVGQITLMTHFSDADGERGI--AHQMEAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G   SLA+S+  L  P  HF   RPGI LYG +        +   +Q  +T  
Sbjct: 178 RGAHGIAGA-RSLANSAATLWHPESHFDWVRPGIILYGASPSGVSAAIEGTGLQPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG   K      I V A GYADGYP                G  
Sbjct: 237 SELIAVQSVAEGDTVGYGSLFKARAPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T   +  VG  ++++G  + +DDVA A GT  Y+L+ 
Sbjct: 286 VIVDGVRTRIVGRVSMDMLTVDLTPIPTASVGSRVELWGTSLPIDDVARACGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|308406153|ref|ZP_07495313.2| alanine racemase alr [Mycobacterium tuberculosis SUMu012]
 gi|308364367|gb|EFP53218.1| alanine racemase alr [Mycobacterium tuberculosis SUMu012]
          Length = 370

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/374 (26%), Positives = 166/374 (44%), Gaps = 26/374 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E + 
Sbjct: 2   VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 61

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVD 129
           LR     A +                 ++   +SS+ Q       +   G +    ++VD
Sbjct: 62  LRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVD 121

Query: 130 TGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG NR G+   +          +  +   +L  ++SH+  AD P   +N VQ +RF   +
Sbjct: 122 TGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFL 181

Query: 187 SHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEA 240
           +  +  G+    A L++SS  +  P+  F L RPGI++YG +         +   +T + 
Sbjct: 182 AQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKC 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            + L++   AGE VSYG      RD+ +A+  IGYADG   +L G             + 
Sbjct: 242 AVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRL-----------EV 290

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I G   P +G+I MD  M D+      +  GD   +FGP I       D A   GT +Y
Sbjct: 291 LINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHY 350

Query: 356 DLLVRIGTRYAKFY 369
           +++     R  + Y
Sbjct: 351 EVVTSPRGRITRTY 364


>gi|315651755|ref|ZP_07904760.1| alanine racemase [Eubacterium saburreum DSM 3986]
 gi|315486010|gb|EFU76387.1| alanine racemase [Eubacterium saburreum DSM 3986]
          Length = 392

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 167/384 (43%), Gaps = 27/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S +    K+DL A+K+N      +L  + + AAVVK + YG G   ++  + +  V  
Sbjct: 1   MDSYKRAYAKVDLDAIKHNLTVTKKSLKKDMKLAAVVKADGYGHGSVPVSLYIEDI-VDF 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118
           F V ++EEG+ LR +     I +L  I     K     ++   + ++ Q      +    
Sbjct: 60  FCVATLEEGINLRYHGITKPILILACIPRNSYKESIVFDIRESVFTLEQAEKINEEAKQM 119

Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      + +DTG NR+G    +++ D      + +  ++  + +H   AD+        
Sbjct: 120 GKKAAIHIAIDTGMNRIGFKPTKKSADIIKEINDMENIEIEGVFTHFHSADESDLTSAKE 179

Query: 178 QLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KS 229
           Q   F   +      GI+      ++S+GIL      F + R GI++YG           
Sbjct: 180 QNLLFTNFLHTLHDMGIDPKIAHASNSAGILNRIGTEFDMVRCGITMYGIAPSGEVNLNG 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  ++  + +  I++  AGE VSYG      +D  +A  +IGYADGYP  LS     
Sbjct: 240 LDYRPALSIYSTVTYIKQINAGECVSYGATFVADKDMRVATISIGYADGYPRDLSN---- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   I G    ILGKI MD T+ D++   + ++GD + I G      I +D+
Sbjct: 296 -------KGYVLIHGVRCNILGKICMDQTIVDVSAVDNAKIGDRVVILGESEGNKITVDE 348

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +   S T +Y+ +  I  R  + Y
Sbjct: 349 LTGDSNTFSYEFICGINKRVPRLY 372


>gi|3913032|sp|O30746|ALR2_KLEAE RecName: Full=Alanine racemase, catabolic
 gi|2360966|gb|AAC38140.1| alanine racemase [Klebsiella aerogenes]
          Length = 356

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 163/369 (44%), Gaps = 26/369 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   IDL AL+ N   +   +  +R  AV KDNAYG G  ++  AL       F + +
Sbjct: 3   RPVVASIDLLALRQNLQIVRRAAPGSRLWAVDKDNAYGHGVARVWSALSA--ADGFALLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G     E  + D   L   + S  Q+    +         
Sbjct: 61  LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLPTSVHSNWQIKALQQA-KLRAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG   +                   ++SH A A++P   V     E  R
Sbjct: 120 IYLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIV-----EPMR 174

Query: 184 TLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
            +    +G+    SLA+S+  L  P  HF   RPGI LYG +         +  ++ V+T
Sbjct: 175 RIEQAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II ++    GE + YGG  + T++  I + A GYADGYP                G
Sbjct: 235 LRSEIIGVQNLRPGEAIGYGGLYRTTQEQRIGIVACGYADGYPR-----------VAPSG 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     +G+++MDM   D+T      +G  ++++G +IK+DDVA +SGT  Y+L
Sbjct: 284 TPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYEL 343

Query: 358 LVRIGTRYA 366
           +  +  R  
Sbjct: 344 MCALAPRVP 352


>gi|149006639|ref|ZP_01830338.1| alanine racemase [Streptococcus pneumoniae SP18-BS74]
 gi|225861522|ref|YP_002743031.1| alanine racemase [Streptococcus pneumoniae Taiwan19F-14]
 gi|307127910|ref|YP_003879941.1| alanine racemase [Streptococcus pneumoniae 670-6B]
 gi|254802393|sp|C1CSV9|ALR_STRZT RecName: Full=Alanine racemase
 gi|147761937|gb|EDK68900.1| alanine racemase [Streptococcus pneumoniae SP18-BS74]
 gi|225726792|gb|ACO22643.1| alanine racemase [Streptococcus pneumoniae Taiwan19F-14]
 gi|306484972|gb|ADM91841.1| alanine racemase [Streptococcus pneumoniae 670-6B]
 gi|327389883|gb|EGE88228.1| alanine racemase [Streptococcus pneumoniae GA04375]
 gi|332072868|gb|EGI83349.1| alanine racemase [Streptococcus pneumoniae GA17545]
 gi|332200256|gb|EGJ14329.1| alanine racemase [Streptococcus pneumoniae GA47368]
          Length = 367

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKVLIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|170751205|ref|YP_001757465.1| alanine racemase [Methylobacterium radiotolerans JCM 2831]
 gi|170657727|gb|ACB26782.1| alanine racemase [Methylobacterium radiotolerans JCM 2831]
          Length = 377

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/365 (38%), Positives = 197/365 (53%), Gaps = 16/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + A +G A  AAVVK +AYGLG +++AP L  AG + FFV  V EG
Sbjct: 22  LTIDLAALAENYRLLAARAGTATCAAVVKADAYGLGADRVAPVLAAAGCRHFFVAQVGEG 81

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126
           V LR +  P A I VL G  PG E    D +L+PV++ + QL  +           P  L
Sbjct: 82  VALRSILGPGAVIAVLNGAAPGSEATCADHDLVPVLNDLSQLDGWQGLARRRARRLPAIL 141

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVDTG  R G +  E               L L++SHLACA +P S VN+ QL  FR + 
Sbjct: 142 QVDTGMARFGFAPDEVGALLDRPDALAGLDLRLVMSHLACAGEPDSPVNAAQLSVFRAVR 201

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                + ASLA+SSGI LGP++HF L RPG +LYG   +    +PM+ V+   AR++  R
Sbjct: 202 RRLPAVPASLAASSGIFLGPDFHFDLVRPGAALYGIAPQEGAPNPMRPVIGLRARVMQTR 261

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YG    + RDS +A  AIGYADG+  +              GG  +  G  
Sbjct: 262 SVPAGTPVGYGHAATVARDSRLATVAIGYADGFFRS------------TAGGAAWFGGVR 309

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +P++G+++MD  + D+TD+    +  G  + I GP+  +D  A A+GT  Y++L  +G R
Sbjct: 310 LPVVGRVSMDSLVLDVTDAAPGTLGPGALVDIVGPERDVDAAAAAAGTIGYEVLTNLGHR 369

Query: 365 YAKFY 369
           + + Y
Sbjct: 370 FHRVY 374


>gi|254247864|ref|ZP_04941185.1| Alanine racemase [Burkholderia cenocepacia PC184]
 gi|124872640|gb|EAY64356.1| Alanine racemase [Burkholderia cenocepacia PC184]
          Length = 356

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 152/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++  AVVK NAYG G  +  P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG   ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYVPEKYRAAWERARACPGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G   SLA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAESIAGA-RSLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAARVP 352


>gi|33241130|ref|NP_876072.1| alanine racemase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|81835791|sp|Q7V9Z2|ALR_PROMA RecName: Full=Alanine racemase
 gi|33238660|gb|AAQ00725.1| Alanine racemase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 386

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 172/382 (45%), Gaps = 28/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   +++   A+K N  ++ +L        AVVK + YG G E +A A    G  +  V
Sbjct: 14  RQRAWVEVSPDAIKANTLAIRSLLDEQCLLMAVVKADGYGHGSETVAEAALAGGATNLGV 73

Query: 63  TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120
            +++E ++LR       I VL   I+P         +L+P +SS  +    +++      
Sbjct: 74  ATLQEALELRKAGIVCPILVLGNLINPEDLDACIHWDLMPTLSSAREALLCNQIAESHDK 133

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA----CADDPSSHVNS 176
                ++VDTG  RLG  L+ A +      N K   L  I SHLA     A+  ++   S
Sbjct: 134 EFCVHIKVDTGMTRLGCDLRLASELIQLVDNLKNLSLRGIYSHLALADVEANGQANSFTS 193

Query: 177 VQLERFRTLIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230
            Q E+F TL+S      K +   LA+S+G L     HF + R G++LYG +    +  + 
Sbjct: 194 KQKEKFETLLSSVMPRGKPLYRHLANSAGTLRDKGLHFDMVRVGLALYGYSPLKDLRNNF 253

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q  +   A++ L+R   +   VSYG      R S +AV  IGYADG    LSG  S  
Sbjct: 254 SLQPALAVRAKVTLLRDVPSDTGVSYGHTFITQRPSRLAVVGIGYADGISRALSGKMS-- 311

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                      I G   P +G ITMD  + DIT+S  I++G  + + G D    I   D 
Sbjct: 312 ---------VLIDGKFYPQVGSITMDQLVIDITESPQIQIGSVVTLLGVDGDSAITPYDW 362

Query: 347 ALASGTTNYDLLVRIGTRYAKF 368
           +  SG+  +++L     R  + 
Sbjct: 363 SEISGSIPWEILCSFKYRLPRV 384


>gi|189485368|ref|YP_001956309.1| alanine racemase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287327|dbj|BAG13848.1| alanine racemase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 385

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/375 (26%), Positives = 171/375 (45%), Gaps = 26/375 (6%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            ++ID +    N   +   ++ + +   V+K NAYG G   +A     AGV    ++S+E
Sbjct: 21  WVEIDRSDFHFNLKKIKEYIAKDTKIMVVIKANAYGHGGVALAKETQRAGVAWIGISSLE 80

Query: 67  EGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPY 124
           EG++ R    ++ I +L  I P    ++    +L P IS++  L       +       +
Sbjct: 81  EGIQFREAGIKSNILILGNIFPFENFQVAVAHSLTPTISTMSGLAALEYWAVRLNKKINF 140

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++D+G  R+G+  + +              ++ + +H A A D        QL+ F  
Sbjct: 141 HLKIDSGMGRIGVVPEASYPILQKIVQMPKTNMTGMYTHFAVA-DTDPVFTQQQLDIFTN 199

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVVT 237
           ++   +        A  A+S+ +      H  + RPGIS+YG T   +      +++V++
Sbjct: 200 IVKFARINLGLKFIAHAANSAALFRNKRTHLDMVRPGISIYGLTPFKHAERFLKLKSVLS 259

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + +II ++K  AG  VSYG      R S+IA   +GYADGY   LS             
Sbjct: 260 WKTKIIFLKKVPAGFCVSYGRTFVTNRASVIATIPVGYADGYNRLLSNKCD--------- 310

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               ++G   PI G+ITMDMTM D+TD   + +GD + + G      IK+D++A    T 
Sbjct: 311 --VLVRGKRCPIAGRITMDMTMIDVTDVKGVTLGDEVVLIGVQGKEHIKVDELAKIQNTI 368

Query: 354 NYDLLVRIGTRYAKF 368
           NY++   I  R  + 
Sbjct: 369 NYEVTSSISVRVPRI 383


>gi|40063239|gb|AAR38066.1| alanine racemase [uncultured marine bacterium 577]
          Length = 357

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/368 (27%), Positives = 169/368 (45%), Gaps = 20/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   IDL+AL++N   +   S  +R  AV+K +AYG G  + A A  +     F + 
Sbjct: 2   SRPIHALIDLSALEHNLSVVRRHSSRSRVMAVIKADAYGHGLLRAAEAFKS--ADGFAIL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
            +E  ++LR    +  I ++ G     E  +F+  +L  VI +  QL   S         
Sbjct: 60  ELEAAIRLREAGYEHTILLIEGFFSRSELELFERYHLSTVIHNSWQLDMLSAYKQ-PRGL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLER 181
              L+++TG NRLG + ++ L       +  +     +++H ACAD          QL+ 
Sbjct: 119 DVFLKLNTGMNRLGFTPEQFLRALEILKSNPVIGQITLMTHFACADAYKDRSGVIEQLKC 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           F ++ S       SLA+S+ IL  P  H    RPGI LYG +   +       ++  +T 
Sbjct: 179 FNSITSDL-DFPCSLANSAAILSYPETHADWVRPGIMLYGSSPFSDISASELDLRPAMTL 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +RII ++    G+ V YG    + R   + + A GYADGYP                G 
Sbjct: 238 TSRIIAVQDLHTGDKVGYGQTYCVKRPMRVGIVAGGYADGYPRHA-----------PTGT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    I+G+++MDM   D+T+  +  VG  +  +G  + +D+VA ++GT +Y+LL
Sbjct: 287 PISVDGIRTRIIGRVSMDMLHVDLTNIENGGVGSLVIFWGKGMPVDEVAESAGTISYELL 346

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 347 CSLAQRIK 354


>gi|164688224|ref|ZP_02212252.1| hypothetical protein CLOBAR_01869 [Clostridium bartlettii DSM
           16795]
 gi|164602637|gb|EDQ96102.1| hypothetical protein CLOBAR_01869 [Clostridium bartlettii DSM
           16795]
          Length = 387

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 163/374 (43%), Gaps = 24/374 (6%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +I+L  +K+N+HS+   L  + +   VVK +AYG G  ++A  L       F V   E
Sbjct: 13  WAEINLNNIKHNFHSLKNTLKSDTKVCCVVKADAYGHGAVEVAKMLQQEKADYFSVARFE 72

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125
           E V+LR       I  +  I     +   +  +   + S         K    G      
Sbjct: 73  EAVELRNNNIHTPILCMGYISECDIEEAINRYIGITVYSYEMAKIINQKAGKLGKKASIH 132

Query: 126 LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++DTG +RLG    + +++            +  I +H A AD+       +QLER++ 
Sbjct: 133 IKIDTGMSRLGFLTDDNSINDILKLKELINLNIDGIYTHFATADETDKKETYLQLERYKK 192

Query: 185 LISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237
           +I   +          +++++ I+      F + R GI LYG   +D+++K   ++  + 
Sbjct: 193 VIDVLEKANIDIQFKHVSNTAAIIDLKELGFNMVRLGIGLYGHYPSDEVSKEVELKPAMK 252

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I  I+    G  VSYG   +    S +A  AIGYADG+  T +             
Sbjct: 253 LKTIITNIKTVAPGTKVSYGYTYEFKEASTLATLAIGYADGFDRTQNNP----------- 301

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASGTTNY 355
            K  I G +  ++G+I MD  M  I + L++ + D + I G +  +  +D+A   GT NY
Sbjct: 302 -KVMINGILCDVVGRICMDQCMVKIPEGLNVNIEDEVLIMGAEVGVTAEDLASRRGTINY 360

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +  R  + Y
Sbjct: 361 EVLCSVSRRVTRDY 374


>gi|56962581|ref|YP_174307.1| alanine racemase [Bacillus clausii KSM-K16]
 gi|56908819|dbj|BAD63346.1| alanine racemase [Bacillus clausii KSM-K16]
          Length = 410

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/382 (24%), Positives = 159/382 (41%), Gaps = 32/382 (8%)

Query: 8   RLKIDLTALKNNW----HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            +++DL A+ +N         +   N    AVVK NAYG G   +A     AG     V 
Sbjct: 13  WVEVDLNAISSNVSSLARFYKSQGHNVAIMAVVKANAYGHGAIAVAKEALAAGATFLGVA 72

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E ++LR    QA I VL    P   ++     +   +     L   ++ ++   + P
Sbjct: 73  LLDEALELRKAGIQAPILVLGKTRPENAELARSEGISVTVFEQEWLEEATRFLAKSPNDP 132

Query: 124 --YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               +++DTG  RLG    E          +K+G +  + +H A AD+        Q ER
Sbjct: 133 LRIHVKMDTGMGRLGQQTVEN-TMAVVCAAQKIGVVEGLFTHFATADELDHTYYRKQQER 191

Query: 182 FRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ- 233
           F   +   +    S+      +S+  +  P   + + R GIS+YG T   +I ++ P + 
Sbjct: 192 FAACVDKLEEANVSIPFIHTGNSAASMRYPGDMYNMVRFGISMYGLTPSVEIKQALPFKL 251

Query: 234 -TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++ + + +  +    G+ VSYG   +    + IA   IGYADG+    S        
Sbjct: 252 IPALSLKTKTVFTKLIQKGDAVSYGATYQAEAPTWIATLPIGYADGWARQNS-------- 303

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
               GG   + G      G+I MD  M ++++   +  G  + + G D    I+LDDVA 
Sbjct: 304 --TKGGYALVNGQKARFAGRICMDQCMIELSE--PVPNGTTVTLVGKDGQEQIELDDVAK 359

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
              T NY+    +  R  + Y 
Sbjct: 360 RLDTINYEAACMLNPRLPRIYV 381


>gi|78356590|ref|YP_388039.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218995|gb|ABB38344.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 388

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 156/388 (40%), Gaps = 33/388 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E L  +IDL AL++N+ ++ +  G   R  AVVK +AYG G   +A  L   G   F V 
Sbjct: 8   EPLWAEIDLCALRHNFSAVRSHVGKGVRIMAVVKADAYGHGAVAVAHELLRQGADAFGVA 67

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGV 120
            ++E V+LR       + +     P +  ++    +I  + S      L           
Sbjct: 68  RLDEAVELRENGITQPVLIFGPTPPQKAPLLARYGIIQTVHSDTYAEALQAALLAQQPRR 127

Query: 121 SHPYALQVDTGFNRLGLSLQ------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                ++VDTG  RLG                    ++ +  +  + +H A +D      
Sbjct: 128 RVQVHIKVDTGMGRLGYIATGNGGDVPLGQVFAGFSSRTMLDVCGVFTHFAASDAADPVT 187

Query: 175 NSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              QL  F   +S         +    A+S+  ++ P   F + RPGI LYG        
Sbjct: 188 ARRQLAVFEQALSELPAGMRDRLCVHAANSAATMVMPGARFDMVRPGIILYGLRPSAEMD 247

Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++ V++ + RI  +++  AG  VSYG        ++IA    GYADGY   LS  
Sbjct: 248 TAGFDLRPVMSLKGRIASVKRVPAGFTVSYGHTHVTAAGTVIAAVPAGYADGYSRLLSSC 307

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                      G   + G    + G++ MD TM D+     ++ GD + + G      + 
Sbjct: 308 -----------GTMLVHGRPAAVTGRVCMDQTMIDVGHIDGVQEGDEVVLLGRQGAESVT 356

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFYT 370
            DD A  + T NY+++ RI  R  + Y 
Sbjct: 357 ADDHARLTSTINYEVVSRILARVPRVYV 384


>gi|228989418|ref|ZP_04149407.1| Alanine racemase [Bacillus pseudomycoides DSM 12442]
 gi|228770365|gb|EEM18940.1| Alanine racemase [Bacillus pseudomycoides DSM 12442]
          Length = 389

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 156/387 (40%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56
           M  + F R   ++++L  + NN   +  +   +    AVVK NAYG     +A     AG
Sbjct: 1   MEKSSFYRDTWVEVNLDEIYNNVTHIKEIIPESVEIFAVVKANAYGHDYVLVARTALEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I V+    P    +  + ++   +     +    ++ 
Sbjct: 61  ATRLAVAFLDEALVLRRAGITAPILVIGPSPPRDVNVAAENDVALTVFQKEWVEEAVEIW 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                  + +  D+G  R+G+  + E  +F  +  +    +L  + +H A AD+  +   
Sbjct: 121 DSPFPMKFHINFDSGMGRIGIRERKELKEFLRSLEDAPFLELEGVYTHFATADEVETSYF 180

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S  K           A+S+  +      F   R GI++YG +  +    
Sbjct: 181 DKQYNTFLEQLSWLKAFGVNPTFIHTANSAATMRFDGITFNAVRIGIAMYGLSPSVEIRP 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++    +  I++ + G+ +SY    +   +  IA   IGYADG+   L G 
Sbjct: 241 YLPIKLEPALSLHTTVAHIKRVIKGDRISYNVTYRTKTEEWIATVPIGYADGWLRRLQGF 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  ++G  VPI+G+ITMD  M  +     + +G  + + G      I 
Sbjct: 301 ------------EVLVQGKRVPIVGRITMDQCMLHLP--CEVPLGTKVTLIGQQGDEYIS 346

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  S T NY+++  I  R  + +
Sbjct: 347 ATEVAEYSNTINYEIIATISFRVPRVF 373


>gi|212550479|ref|YP_002308796.1| alanine racemase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548717|dbj|BAG83385.1| alanine racemase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 383

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/380 (27%), Positives = 172/380 (45%), Gaps = 29/380 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N++   +L   + +   +VK N YG+G  +++  L N G     V   +E
Sbjct: 13  LEVNLKAIIDNFNYFRSLLKRDTKIICMVKANGYGIGSYELSKTLQNNGADILAVALADE 72

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP--QLTFYSKLMSCGVSHPYA 125
           GV LR       I V+          IF  NL P I +      T         + +P  
Sbjct: 73  GVYLRKKGIHLPILVMN-TEKYSLNKIFQYNLHPCIYNQNILDATIVETKKQDILHYPIH 131

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           L++DTG +R G + +E  D      N+    +  I SHLA   DP   +  + Q++ F  
Sbjct: 132 LKIDTGMHRFGFNPEEIPDVAKILKNQNNVFVQSIFSHLAATADPFLDYFTNQQIKLFIY 191

Query: 185 LISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHPM 232
           L    + +     +  + +S+GI   P+  F + R GI LYG +          ++ + +
Sbjct: 192 LSKQLEQLLGYQCQRHILNSAGIERFPDAQFDMVRLGIGLYGISVCTFSHTMGKDRPYGV 251

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V   + RI+ IR+   GE V Y     L RDS +A   +GYADG    L         
Sbjct: 252 KPVAVLKTRILQIREIKKGETVGYNRNGILDRDSFVACLPVGYADGLNRHLGNRCC---- 307

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALAS 350
                 + FI G++ PI+G I MD  + DITD  + ++  GD ++IFG  I ++ +A   
Sbjct: 308 ------QVFIGGHLCPIIGNICMDSCIIDITDITNKKIVEGDEVEIFGKHITINFLAKKL 361

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
            T  Y++L  I  R  + Y 
Sbjct: 362 QTIPYEILTSISQRVKRVYV 381


>gi|295095597|emb|CBK84687.1| alanine racemase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 356

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/371 (26%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +  ++DL ALK+N   +   +  +R  +VVK NAYG G ++I  AL   G   F + 
Sbjct: 2   SRPILAQLDLQALKDNLQIVRRAAPGSRVWSVVKANAYGHGIDRIWSAL--GGTDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  + D   L   + S  Q      +    +  
Sbjct: 60  NLEEAILLRERGWKGPILLLEGFFHAQDLPLLDKYRLTTSVHSNWQ---IKAIQDAKLHA 116

Query: 123 PYAL--QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QL 179
           P  L  +V++G NRLG   +            K      +++H A A+ P    +++ ++
Sbjct: 117 PLDLYLKVNSGMNRLGFQPERVHTVWQQLRALKNVGEMTLMAHFADAEKPDGIADAMVRI 176

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           E+    +        SL++S+  L  P  H+   RPGI LYG +         +  ++ V
Sbjct: 177 EQAAEGLDC----PRSLSNSAATLWHPEAHYNWVRPGIVLYGASPSGQWQDIANSGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AG+ V YG + +   +  I + A GYADGYP               
Sbjct: 233 MTLRSEIIGVQTLKAGDTVGYGSRYRAAGEQRIGIVAGGYADGYPR-----------IAP 281

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G     +G ++MDM   D+T      +G  ++++G ++K+DDVA A+GT  Y
Sbjct: 282 SGTPVWVDGVRTGTVGTVSMDMLAIDLTPCPQAGIGSPVELWGNEVKIDDVAAAAGTVGY 341

Query: 356 DLLVRIGTRYA 366
           +L+  +  R  
Sbjct: 342 ELMCALAPRVP 352


>gi|167554127|ref|ZP_02347868.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205321605|gb|EDZ09444.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 356

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++ S  L++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  I  R  
Sbjct: 343 LLCAIAPRVP 352


>gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
 gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
          Length = 823

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/371 (28%), Positives = 151/371 (40%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L    +   +VK +AYG G  ++A  L    V    V   +E
Sbjct: 464 LEINLNALVDNLNYYRNKLKPETKLMCMVKASAYGAGPFEVAKTLEEHRVDYLAVAVADE 523

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH-PYA 125
           G  LR       I ++        K +F   L P I   P            GVS+ P  
Sbjct: 524 GADLRKAGITCPIVIMNP-EATAFKTMFAYRLEPNIYGFPILEEMIKAAEREGVSNFPIH 582

Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLA-CADDPSSHVNSVQLERFR 183
           +++DTG +RLG S  Q+          +       + SHLA    +        Q+E F 
Sbjct: 583 IKIDTGMHRLGFSPHQDMQRLVERLHRQSAVIPRSVFSHLAGSDSERFDAFTRKQIETFE 642

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
              +  +      I   + +++GI   P   F + R GI LYG     N  H +  V T 
Sbjct: 643 AAAAELQAGFGVKILRHVCNTAGIERYPGAQFDMVRLGIGLYGIDPFTN--HILHNVSTL 700

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ I    A E V Y  +  L RDS IA   IGYADG    L               
Sbjct: 701 KTTILQIHDIPADETVGYSRKGVLYRDSRIATIPIGYADGLNRHLGNGH----------A 750

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G   P +G I MD+ M D+TD    + GD   IFG D+ +  +A A GT  Y++L
Sbjct: 751 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLAEALGTIPYEIL 809

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 810 TSVSNRVKRVY 820


>gi|326388436|ref|ZP_08210032.1| alanine racemase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207168|gb|EGD57989.1| alanine racemase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 372

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 188/364 (51%), Gaps = 17/364 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  +      A+ A VVK + YGLG   +A  L + G + F V  + E 
Sbjct: 7   LTIDLGALAANYRLIRQQVSPAQVAGVVKADGYGLGAALVARTLIDEGCRHFCVALLGEA 66

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126
             L  +   +A +FVL G+ PG E        IPV++S+ Q+  + ++  + G   P  L
Sbjct: 67  AALVPHVRGEADVFVLNGLLPGDEAECATLGAIPVLNSLDQIELWSAQARARGRKLPAML 126

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +R+GLS +E               +  +ISHLACADDP++  N+ Q ERFR + 
Sbjct: 127 QFDTGMSRMGLSPEEIDRLLATPDVLDPIDVRFLISHLACADDPTAAANAEQAERFRAIT 186

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +H+ G+  +L +S G  L    HF L R GI+LYGG  +   + PM  VV  EARI  +R
Sbjct: 187 AHFPGVPRALDNSGGSFLDRG-HFDLVRAGIALYGGAPRAGAN-PMHAVVALEARIAQLR 244

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YG   +  R++ IA   +GYADG+P  L              G  +I G  
Sbjct: 245 TIPAGTGVGYGLTFRAERETRIATIQVGYADGWPRCLGNR-----------GAAYIGGVR 293

Query: 307 VPILGKITMDMTMFDITDSLSIE--VGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            PI G+++MD    D+TD  +     G  +++ GP   +DDVA  +GT +Y++L ++  R
Sbjct: 294 APIAGRVSMDSITLDVTDVPAEHLFPGAPVELVGPHQSIDDVANDAGTISYEILTQLSRR 353

Query: 365 YAKF 368
           Y + 
Sbjct: 354 YDRI 357


>gi|251795108|ref|YP_003009839.1| alanine racemase [Paenibacillus sp. JDR-2]
 gi|247542734|gb|ACS99752.1| alanine racemase [Paenibacillus sp. JDR-2]
          Length = 394

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 163/385 (42%), Gaps = 30/385 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R++I L AL  N H+   A+       A VK NAYG G  +IA      GV    V 
Sbjct: 6   RPTRVEISLDALNRNLHAFRGAMPEGRLLMASVKANAYGHGAVEIAREAERFGVDYLGVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP--QLTFYSKLMSCGVS 121
            ++E ++LR       I VL  +      I  D ++   +      +        + G  
Sbjct: 66  FLDEALQLRHAGIATPILVLGFVPADALAIARDKDITIALFREDILEAAAALPAQADGKK 125

Query: 122 HPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               +++D+G  RLG +   EA+ F   + +    ++  + +H A AD+        Q E
Sbjct: 126 LKAHIKIDSGMGRLGIIGKDEAIAFIRKALDVPQLEIEGMFTHYAKADETDKSYTRQQYE 185

Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232
           RF  +  + +  +        A+S+  +  P Y   + R GIS+YG         +   +
Sbjct: 186 RFHAVAEYVRSNKLPIRILHAANSAAGIDTPEYGGDMVRLGISMYGLYPSDEVSRERIKL 245

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ ++ +++++K   G  +SYG +    ++  I    IGYADG+   LSG       
Sbjct: 246 EPVLSLKSEVVMVKKTPPGWGISYGTRYVTKQEECIGTLPIGYADGFSRMLSG------- 298

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITD---SLSIEVGDYIQIF----GPDIKLDD 345
                    ++G  VP+ G I MD  M  +       ++E G+ + +     G +I  ++
Sbjct: 299 ----KAHVLVRGVKVPVRGTICMDQCMIALDPASADAAVEPGEEVVLIGRQGGEEISAEE 354

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +AL  GT NY++   +  R  + Y 
Sbjct: 355 LALQLGTINYEVTCMLAARVPRVYV 379


>gi|329938191|ref|ZP_08287642.1| alanine racemase [Streptomyces griseoaurantiacus M045]
 gi|329302680|gb|EGG46570.1| alanine racemase [Streptomyces griseoaurantiacus M045]
          Length = 387

 Score =  368 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/391 (27%), Positives = 173/391 (44%), Gaps = 33/391 (8%)

Query: 1   MHSNE----FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M ++E      R +IDL AL+ N  ++ A +  A+  AVVK +AYG G    A A   AG
Sbjct: 1   MKTSEAAPLRARAEIDLAALRANVRALRAHAPGAQLMAVVKADAYGHGALPCARAALAAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKL 115
            +     + EE + LR      RI        G  +   + +L   +S +       +  
Sbjct: 61  ARWLGTATPEEALALRAAGIPGRIMCWLWTPGGPWREAVEADLDLGVSGLWALREVTAAA 120

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSS 172
            + GV     L+ DTG  R G S  +  +    +   +   L +++ + SHLACAD+P  
Sbjct: 121 RAAGVPARVQLKGDTGLGRNGCSPADWPELVAEALRAEAAGLLRITGLWSHLACADEPGH 180

Query: 173 HVNSVQLERFRTLI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                QL RFR ++  +  +G+      +A+S   L  P+ HF L R GI++YG +    
Sbjct: 181 PSVVPQLARFREMVGYAEERGVRPEVRHIANSPAALTLPDSHFDLVRTGIAMYGLSPSPE 240

Query: 228 ----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                   ++ V+T  A + L++    G  VSYG       D+ + +  +GYADG P   
Sbjct: 241 LGAPADFGLRPVMTLAASLALVKHVPGGHGVSYGHHYVTPGDTTLGLVPLGYADGIPRHA 300

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---- 339
           SG            G   + G    + G++ MD  + D+       VG    +FGP    
Sbjct: 301 SG-----------AGPVLVGGKWRTVAGRVAMDQFVVDLGGDEP-PVGAEAVLFGPGDRG 348

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +   +D A A+GT  Y+++ RIGTR  + + 
Sbjct: 349 EPTAEDWAQAAGTIAYEIVTRIGTRVPRVHV 379


>gi|168487532|ref|ZP_02712040.1| alanine racemase [Streptococcus pneumoniae CDC1087-00]
 gi|183569644|gb|EDT90172.1| alanine racemase [Streptococcus pneumoniae CDC1087-00]
          Length = 367

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ I L A++ N   M           AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKVLIHLGAIRQNIQQMGTHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
 gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
          Length = 821

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 162/370 (43%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N++     L    +   +VK   YG G  ++A  L         V   +E
Sbjct: 463 LEVNLDAVVHNFNYYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGV-SHPYA 125
           G +LR       + V+         ++F+  L P + S         +    G+ S+P  
Sbjct: 523 GEELRKEGISIPLIVMNPEF-SSFNVLFENQLEPEVYSFRLLDAMIKETERRGITSYPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184
           +++DTG +RLG   ++  +       +       + SHL  +D          QL+ F  
Sbjct: 582 IKIDTGMHRLGFQPEDVPEVCRRLKEQSGVVARSVFSHLVGSDSYIFDDFTKKQLDTFTR 641

Query: 185 LISHYK-GIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           + +  + G+E      + +S+GI    +Y   + R GI LYG +    K   ++ + T +
Sbjct: 642 VAAELEAGLEYKVIKHILNSAGIERFTDYQMDMVRLGIGLYGVSASGQK--GLRNISTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+   AG+ + Y     + RDS IA+  IGYADG     S            GG+
Sbjct: 700 TTILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYADGLDRHFSN----------GGGE 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G+  PI+G I MD  M D+TD+     GD + IFG ++ + +++    T  Y++L 
Sbjct: 750 VVINGHRCPIIGNICMDACMIDVTDT-DAHEGDSVIIFGEELPVSELSDKLKTIPYEILT 808

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 809 SISPRVKRVY 818


>gi|154253914|ref|YP_001414738.1| alanine racemase [Parvibaculum lavamentivorans DS-1]
 gi|154157864|gb|ABS65081.1| alanine racemase [Parvibaculum lavamentivorans DS-1]
          Length = 408

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/368 (39%), Positives = 201/368 (54%), Gaps = 7/368 (1%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  N+  + A +  A  +AVVK NAYGLG   +A  L   G + FFV    EG
Sbjct: 29  LTIDLDAVAANYDMLRAEAAGAEVSAVVKANAYGLGMGPVARRLAAEGCRSFFVAEANEG 88

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             LR   P A I+VL G+ PG         L+P ++S+ ++  + +    G S   AL  
Sbjct: 89  AALRALLPDAEIYVLNGLFPGTAGFYAAHGLVPCLASMAEVAEWREAAKGG-SLKAALHF 147

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR----T 184
           DTG NRLG+S  +A             ++ LI+SHLACADD +S +N+ QL RFR     
Sbjct: 148 DTGMNRLGMSEADAAALAAEGALTAGIEVRLIMSHLACADDAASPMNARQLARFRGLRTI 207

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           L   + G +ASLA+S GI LG +YHF L RPG+SLYGG+    + HP +  VT EAR++ 
Sbjct: 208 LAGRFAGAKASLANSGGIYLGKDYHFDLVRPGVSLYGGSPFTGREHPFRPAVTVEARVLA 267

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R+  A E   YG   K    + +AV A GYADGY   LS            GG+  I G
Sbjct: 268 VREMAAEETAGYGATWKARGTARMAVLAAGYADGYMRALSSPRPNGDGGDDYGGQVRIAG 327

Query: 305 YMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           Y  P+ G+I+MDM + D++      ++ GD  ++ GP I +DDV L +GT  Y++L  +G
Sbjct: 328 YTAPVAGRISMDMLIVDVSGLPEGAVKRGDMAELIGPHITVDDVGLKAGTLGYEILTSLG 387

Query: 363 TRYAKFYT 370
            RY + Y 
Sbjct: 388 GRYMRIYV 395


>gi|307546199|ref|YP_003898678.1| alanine racemase [Halomonas elongata DSM 2581]
 gi|307218223|emb|CBV43493.1| alanine racemase [Halomonas elongata DSM 2581]
          Length = 366

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/375 (28%), Positives = 156/375 (41%), Gaps = 24/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             LR  IDL AL +N+     L+  +R+ AV+K +AYG G    A AL       F V  
Sbjct: 3   RPLRADIDLDALCHNYRLARDLAPTSRSLAVLKADAYGHGLVPCARAL-EGLAPAFAVAC 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE   LR     A I +L GI    E    +   L  V+ S  Q+             P
Sbjct: 62  LEEAEALREGGITAPIVLLEGIFSADELARVEALKLGTVVHSDWQVEALLSHRPA-EPIP 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             ++VD+G +RLG + + A                  ++SH A AD   +     Q+   
Sbjct: 121 TWVKVDSGMHRLGFAPERAASVWARLSAAPAQACDLHLMSHFATADHADTAYFEHQMRTL 180

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
             L          LA+S   L  P  H    RPG+ LYG        + S  ++ V+T  
Sbjct: 181 NALAETL-NAPTCLANSPATLARPESHGAWNRPGVMLYGSDPLEASNSASRELEPVMTLR 239

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I +R    GE V YGG+ +  R S I V A GY DGY                 G  
Sbjct: 240 SQLIAVRDLDEGEPVGYGGRWRAPRPSRIGVVACGYGDGYDRHA-----------IDGTP 288

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTN 354
             + G    ++GK++MDM   D+TD    ++G  + ++G       + +D+VA    T +
Sbjct: 289 ALVAGRRTTLVGKVSMDMLTVDLTDIPEADIGSEVVLWGRAANGEVLSVDEVARHCDTIS 348

Query: 355 YDLLVRIGTRYAKFY 369
           Y LL  +  R  + Y
Sbjct: 349 YTLLTGVLPRVPRRY 363


>gi|82751673|ref|YP_417414.1| alanine racemase [Staphylococcus aureus RF122]
 gi|82657204|emb|CAI81644.1| alanine racemase 1 [Staphylococcus aureus RF122]
          Length = 382

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 166/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISDE 121

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H  CAD+P   
Sbjct: 122 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFVCADEPGD- 177

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 178 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 238 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 297 -----------VNVNGHQCEVVGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
             A    T NY++L  +  R  + Y
Sbjct: 344 VAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|161503072|ref|YP_001570184.1| alanine racemase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864419|gb|ABX21042.1| hypothetical protein SARI_01137 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 356

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/369 (29%), Positives = 163/369 (44%), Gaps = 26/369 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G   F + +
Sbjct: 3   RPIQASLDLQVMKQNLSIVRRAAPEARVWSVVKANAYGHGIERVWNALS--GTDGFAMLN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G    Q+   +D   L   I S  QL              
Sbjct: 61  LEEAITLRERGWKGPILMLEGFFHAQDLETYDTYRLTTCIHSNWQLKALQNAR-LNAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++V++G NRLG   + A          +      I+SH A AD P         E  R
Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTIMSHFAQADHPEGIG-----EAMR 174

Query: 184 TLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
            +    +GI    SLA+S+  L  P  H+   RPGI LYG +         +  ++ V+T
Sbjct: 175 RIALATEGIQCPYSLANSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIANTGLKPVMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II ++   AGE V YGG     ++  I + A GYADGYP                G
Sbjct: 235 LSSEIIGVQTLRAGEKVGYGGCYSAHQEQRIGIVAAGYADGYPRHA-----------PTG 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L
Sbjct: 284 TPVLVDGIRTGTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVAAAAGTLGYEL 343

Query: 358 LVRIGTRYA 366
           L  +  R  
Sbjct: 344 LCAVAPRVP 352


>gi|323439214|gb|EGA96941.1| alanine racemase [Staphylococcus aureus O11]
          Length = 372

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   F V +++E ++
Sbjct: 3   VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 62

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128
           LR++   A+I VL  +            +   + S   L    K +           +++
Sbjct: 63  LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 122

Query: 129 DTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           DTG  RLG+    + QE ++        +      + +H ACAD+P   + + Q +RF+ 
Sbjct: 123 DTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD-MTTEQYQRFKD 178

Query: 185 LISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAE 239
           +++   K       +S+G LL         RPGISLYG              ++  V   
Sbjct: 179 MVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLI 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G              
Sbjct: 239 ANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF------------ 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G+   ++G++ MD T+  + D   ++ GD + +          ++  A    T NY
Sbjct: 287 VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESSQSVEVAAEKQHTINY 344

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +  R  + Y
Sbjct: 345 EVLCNLSRRLPRIY 358


>gi|260436550|ref|ZP_05790520.1| alanine racemase [Synechococcus sp. WH 8109]
 gi|260414424|gb|EEX07720.1| alanine racemase [Synechococcus sp. WH 8109]
          Length = 376

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 182/381 (47%), Gaps = 24/381 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ++  +   +++   A++ N  ++   L    +  AVVK + YG G E +A A    G   
Sbjct: 5   LNPRQRAWVEVSPAAIRGNARALCQHLGPRTQLMAVVKADGYGHGAETVARAALQGGATS 64

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
             V +++EG++LR    +A + +L  ++ P   +      L+P +SS+ +    + L + 
Sbjct: 65  LGVATLQEGLELRRAGLEAPVLLLSNLNKPDDLRTCLHWGLMPTLSSLREAQLCNALAAD 124

Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G      L++DTG  RLG SL E         + +   L  I SHLACAD+P+  + S+
Sbjct: 125 SGRCFDVQLKIDTGMARLGCSLSEGHQTAAELESLEHLNLEGIYSHLACADEPNDALTSL 184

Query: 178 QLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--P 231
           Q ERF ++++       GI   LA+S+G LL    H  L R G++LYG     + S+  P
Sbjct: 185 QQERFVSMLAALPQAGAGITRHLANSAGTLLNRELHHDLVRVGLALYGHAPASHLSNVIP 244

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +Q  +   AR+ LIR+  AG  VSYG +    R + +AV  IGYADG   +LSG      
Sbjct: 245 LQPALAVRARVSLIREVPAGTGVSYGHRFITERPTRLAVVGIGYADGVLRSLSGRI---- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                      +   +P +G ITMD  + D TD+  +E GD + + G D    +     +
Sbjct: 301 -------HALHRNRQLPQVGAITMDQLLLDATDAAELEQGDIVTLLGQDGDLEVSPQSWS 353

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
              G+  +++L     R  + 
Sbjct: 354 NHCGSIPWEILCGFKRRLPRV 374


>gi|323442408|gb|EGB00037.1| alanine racemase [Staphylococcus aureus O46]
          Length = 372

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   F V +++E ++
Sbjct: 3   VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 62

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128
           LR++   A+I VL  +            +   + S   L    K +           +++
Sbjct: 63  LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 122

Query: 129 DTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           DTG  RLG+    + QE ++        +      + +H ACAD+P   + + Q +RF+ 
Sbjct: 123 DTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD-MTTEQYQRFKD 178

Query: 185 LISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAE 239
           +++   K       +S+G LL         RPGISLYG              ++  V   
Sbjct: 179 MVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLI 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G              
Sbjct: 239 ANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF------------ 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G+   ++G++ MD T+  + D   ++ GD + +          ++  A    T NY
Sbjct: 287 VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINY 344

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +  R  + Y
Sbjct: 345 EVLCNLSRRLPRIY 358


>gi|298695345|gb|ADI98567.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus ED133]
          Length = 382

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 168/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P  +
Sbjct: 122 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEP-GY 177

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 178 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 238 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 297 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
             A    T NY++L  +  R  + Y
Sbjct: 344 VAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|149001990|ref|ZP_01826944.1| alanine racemase [Streptococcus pneumoniae SP14-BS69]
 gi|237649236|ref|ZP_04523488.1| alanine racemase [Streptococcus pneumoniae CCRI 1974]
 gi|237821996|ref|ZP_04597841.1| alanine racemase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147759799|gb|EDK66789.1| alanine racemase [Streptococcus pneumoniae SP14-BS69]
 gi|332074034|gb|EGI84512.1| alanine racemase [Streptococcus pneumoniae GA41301]
          Length = 367

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ I L A++ N   M           AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKVLIHLGAIRQNIQQMGTHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|148997751|ref|ZP_01825315.1| alanine racemase [Streptococcus pneumoniae SP11-BS70]
 gi|168575112|ref|ZP_02721075.1| alanine racemase [Streptococcus pneumoniae MLV-016]
 gi|307068325|ref|YP_003877291.1| alanine racemase [Streptococcus pneumoniae AP200]
 gi|147756250|gb|EDK63292.1| alanine racemase [Streptococcus pneumoniae SP11-BS70]
 gi|183578867|gb|EDT99395.1| alanine racemase [Streptococcus pneumoniae MLV-016]
 gi|306409862|gb|ADM85289.1| Alanine racemase [Streptococcus pneumoniae AP200]
          Length = 367

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ I L A++ N   M           AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKVLIHLGAIRQNIQQMGTHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|307328078|ref|ZP_07607259.1| alanine racemase [Streptomyces violaceusniger Tu 4113]
 gi|306886383|gb|EFN17388.1| alanine racemase [Streptomyces violaceusniger Tu 4113]
          Length = 384

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 157/382 (41%), Gaps = 29/382 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R  +DL AL+ N  ++   +  A   AVVK +AYG G    A A   AG       + 
Sbjct: 7   RARAVVDLAALRANVRALRDAAPTAELMAVVKADAYGHGMIPCARAARKAGASWLGAATP 66

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           EE + LR      R+        G  +   + ++    S +       +   +CG +   
Sbjct: 67  EEALGLRAAGDTGRLMCWLWTPGGPWRQAIEADIDVSASGLWALREAVAAARACGRTARL 126

Query: 125 ALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G    +          +  +   +++ + SH ACAD+P       QL  
Sbjct: 127 HLKADTGLGRSGCQPADWPALVDEARAAEAEGAIRVTGLWSHFACADEPGHPSIGAQLSV 186

Query: 182 FRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232
           FR +++H +  G+      LA+S   L  P  HF L R GI+ YG +            +
Sbjct: 187 FREMVAHAEQAGLRPEVRHLANSPATLTVPESHFDLVRTGIATYGISPSPELGTAADFGL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T  A +  +++   G  VSYG +     ++ +A+  +GY DG P   SG       
Sbjct: 247 RPVMTLSAALASVKRVPGGHGVSYGHRYVTPGETTLALVPVGYGDGIPRHASGT------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                G   + G    I G + MD  + D+    +   GD   +FGP    +   +D A 
Sbjct: 301 -----GPVLVAGKWRTIAGTVAMDQFVVDLGGD-TAAPGDEAVLFGPGDRGEPTAEDWAR 354

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
           A G+  Y+++ RI  R  + Y 
Sbjct: 355 AVGSIAYEIVTRISARIPRVYV 376


>gi|237654641|ref|YP_002890955.1| alanine racemase [Thauera sp. MZ1T]
 gi|237625888|gb|ACR02578.1| alanine racemase [Thauera sp. MZ1T]
          Length = 361

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 166/367 (45%), Gaps = 17/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL+AL++N+       G  R  AVVK NAYG G  + A AL +     F V  
Sbjct: 2   RPARALIDLSALRHNYLLARERHGG-RALAVVKANAYGHGALRCAQALRDE-ADGFAVAF 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E ++LR     A I +L G+    E        L  V+    QL    +         
Sbjct: 60  LGEALELRAGGIDAPILLLEGVFAADELAEAARQRLWMVVHHEEQLCMLER-TPLAAPVD 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NR G                      ++++H A AD+P       QL+RF 
Sbjct: 119 VWLKVNSGMNRAGFVGDAVARTWRRLQASGKVGRIVLMTHFARADEPELGTTLEQLQRFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
              +   G   S+A+S+ IL  P       RPGI LYG      + + ++ V+T E+ ++
Sbjct: 179 AATAGLPGA-RSVANSAAILAWPQARRDWARPGILLYGADPMPAEGNGLRAVMTLESAVM 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  +GE + YGG+    R + + + A+GYADGYP             V  G    ++
Sbjct: 238 AVREIASGEALGYGGRFVAERPTRVGLVAMGYADGYPR-----------VVPDGTPVAVE 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    I+G+++MDM   D+T      +G  ++++G  + ++ +A A+GT +Y+LL  +  
Sbjct: 287 GRASRIIGRVSMDMLTIDLTALPEACLGSQVELWGKQVPINHIAQAAGTISYELLCNV-K 345

Query: 364 RYAKFYT 370
           R    Y 
Sbjct: 346 RVRLEYA 352


>gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
 gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
          Length = 821

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 148/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL  N +     L    +   +VK +AYG G  ++A  L +  V    V   +E
Sbjct: 463 LEINLNALTANLNYYRNKLKPETKMVCMVKASAYGAGSFEVAKTLEDQRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYA 125
           G  LR       I ++        K +FD  L P + S   L    K        + P  
Sbjct: 523 GADLRKAGIHCPIIIMDP-EVSAFKTMFDYKLEPEVYSFQMLEELIKAAEREGAANVPVH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFRT 184
           ++VDTG +RLG +  +          +       I SHL     D        Q+E F  
Sbjct: 582 IKVDTGMHRLGFAPSDMPRLAERLHRQSTVIPRSIFSHLVGSDSDRFDPFTRRQIETFEA 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             +  +      I   + +++GI   P   F + R G+ LYG     N+   +  V T +
Sbjct: 642 AAADLQKEFNHKIIRHICNTAGIERYPGAQFDMVRLGLGLYGIDPYTNR--ILHNVTTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I    A E V Y  +  L+RDS IA   IGYADG    L                
Sbjct: 700 TTILQIHDVPADETVGYSRKGVLSRDSRIATLPIGYADGLNRRLGNGH----------AY 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD   IFG D+ +  ++    T  Y++L 
Sbjct: 750 CLVNGKKAPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSDVLETIPYEILT 808

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 809 SVSGRVKRIY 818


>gi|117923575|ref|YP_864192.1| alanine racemase [Magnetococcus sp. MC-1]
 gi|117607331|gb|ABK42786.1| alanine racemase [Magnetococcus sp. MC-1]
          Length = 396

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/384 (28%), Positives = 165/384 (42%), Gaps = 27/384 (7%)

Query: 1   MH-SNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M  ++    L+IDL AL++N      A         V+K + YG+G   +A  L      
Sbjct: 14  MQWTHRPTWLEIDLAALRHNLRQARTATGPQVAHFPVIKADGYGIGAIAVAHTLEEE-AD 72

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            F V  VEE  +LR      RI +  G++PG E+      + P +S    L    +   C
Sbjct: 73  GFCVALVEEAEQLRTAGINKRIMLFSGLYPGLEERAIRARVEPFLSDEINLNALWQAAKC 132

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  +++D+G  RLG   +          +    +L+ ++SH+ACADD  S + + Q
Sbjct: 133 YGPISVHIKIDSGMARLGYHPEHVPSLLDQLAHMPELKLAGLVSHMACADDRHSPITNAQ 192

Query: 179 LERFRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSH 230
           L     ++ H        + SLA+S+ IL  PN H+Q  RPGI +YG +         + 
Sbjct: 193 LATLSPILEHPLVKQTQAQLSLANSATILGHPNAHYQWVRPGIMIYGASPFFPHTNAANE 252

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q VV     I  I     G+ + YG     TR + IA   +GYADGY    S      
Sbjct: 253 GLQPVVRWVTHIQRIHTLEKGKSLGYGHTFTATRPTRIAQLPVGYADGYNRLWSN----- 307

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDD 345
                  G   I G   P++G + MD    DI+D    ++  D   + G     +I L++
Sbjct: 308 ------KGSVLIAGQHCPVVGIVCMDQIAVDISDLQGEVKQWDEAVLLGKQHNAEITLEN 361

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T  Y++L RIG R  + Y
Sbjct: 362 WATELKTIPYEILTRIGPRVPRRY 385


>gi|315185426|gb|EFU19197.1| alanine racemase [Spirochaeta thermophila DSM 6578]
          Length = 388

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 159/374 (42%), Gaps = 23/374 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             I L  L++N   +    G  R   A VK +AYG G  ++   L   GV+   V + EE
Sbjct: 6   AVIYLPHLRHNLREIRRRVGEGRMVCAAVKADAYGHGAVRVGRVLVEEGVEMLGVATPEE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126
           G +L      AR+ +L        ++  +  +   +              + G      +
Sbjct: 66  GAELVEAGVGARVLLLGLTDGAGLELAVEAGVELAVGDREYVREVVRVARAKGRRVRVHV 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG  R G + +EA+          + +L+ + +H   +D+        Q+ERF  ++
Sbjct: 126 EVDTGMGRTGCAPEEAVGVVEEVEGAGVLELAGMWTHFPSSDEADDGFTEAQVERFLQVV 185

Query: 187 S--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAE 239
                +GI       A+S GI+  P     + RPGISLYG      +     +  V+   
Sbjct: 186 GRVRARGISPGLLHAANSGGIIGHPPSWLDMVRPGISLYGYYPSEEQERTLSLLPVMEFV 245

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++++ ++K   G  VSYG   +  RD+ IA  A GYADGY   LS              +
Sbjct: 246 SQVVFLKKVRKGTPVSYGRTWRAPRDTWIATVAAGYADGYSRLLSSR-----------AE 294

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---IKLDDVALASGTTNYD 356
             I+G   P++G++ MD  M D+   L +   D + +FGPD      +++A   GT  Y+
Sbjct: 295 VLIRGRRYPVVGRVCMDQFMVDVGPHLEVARYDRVVLFGPDPAGPSAEELARLVGTIPYE 354

Query: 357 LLVRIGTRYAKFYT 370
           +   +  R  + Y 
Sbjct: 355 ITCAVSRRVPRVYV 368


>gi|78211897|ref|YP_380676.1| alanine racemase [Synechococcus sp. CC9605]
 gi|78196356|gb|ABB34121.1| alanine racemase [Synechococcus sp. CC9605]
          Length = 376

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 179/381 (46%), Gaps = 24/381 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ++  +   +++   A++ N  ++   L    +  AVVK + YG G E +A A    G   
Sbjct: 5   LNPRQRAWVEVSPAAIRANARALCQHLGPRTQLMAVVKADGYGHGAETVARAALQGGATS 64

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
             V +++EG++LR    +A + +L  ++ P   +      L+P +SS+      + L + 
Sbjct: 65  LGVATLQEGLELRRAGLEAPVLLLSNLNEPDDLRTCLHWRLMPTLSSLRDAQLCNALAAD 124

Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G      L++DTG  RLG SL E         + +   L  I SHLACAD+P   + S+
Sbjct: 125 SGRCFDVQLKIDTGMARLGCSLSEGHQTAAVLQSLEHLNLEGIYSHLACADEPDDALTSL 184

Query: 178 QLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231
           Q ERF +++S       GI   LA+S+G LL    H  L R G++LYG      +N   P
Sbjct: 185 QQERFVSMLSALPRGGAGITRHLANSAGTLLNRELHHDLVRVGLALYGHAPASHLNNVIP 244

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +Q  +   AR+ LIR  +AG  VSYG +    R + +AV  IGYADG   +LSG      
Sbjct: 245 LQPALAVRARVSLIRDVIAGTGVSYGHRFITQRPTRLAVVGIGYADGVLRSLSGHI---- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                          +P +G ITMD  + D TD+  +E GD + + G D    +   + +
Sbjct: 301 -------HALHSNRQLPQVGAITMDQLLLDATDAAGLEPGDIVTLLGQDGDLELSPQNWS 353

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
              G+  +++L     R  + 
Sbjct: 354 DHCGSIPWEILCGFKRRLPRV 374


>gi|283771238|ref|ZP_06344127.1| alanine racemase [Staphylococcus aureus subsp. aureus H19]
 gi|283459443|gb|EFC06536.1| alanine racemase [Staphylococcus aureus subsp. aureus H19]
          Length = 382

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 167/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGITAKILVLGVLPVKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 122 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 177

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q +RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 178 MTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKI 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 238 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 297 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
             A    T NY++L  +  R  + Y
Sbjct: 344 VAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
 gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
          Length = 821

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 152/370 (41%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L  + +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLEALVDNLNYYRNKLKPDTKMVCMVKASAYGAGSFEIAKTLEDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYA 125
           G  LR     + I ++        K +FD  L P + S   L    K        + P  
Sbjct: 523 GADLRKAGINSSIIIMNP-ELTAFKTMFDYKLEPEVYSFHLLEELIKAAGREGVSNFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFRT 184
           +++DTG +RLG + +E          +       + SHL     +        Q+E F  
Sbjct: 582 IKIDTGMHRLGFAPEEIPALVDRLHRQSAVIPRSVFSHLVGSDAERFDSFTRRQIETFEN 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             +  +      I   + +++GI   P   F + R GI LYG     NK   +  V T +
Sbjct: 642 ASAELQAGFSHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNK--ILHNVGTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I    A E V Y  +  LTR+S IA   IGYADG    L                
Sbjct: 700 TTILQIHDVPADETVGYSRKGILTRNSRIAAIPIGYADGLNRHLGN----------GNAY 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD   IFG ++ +  +A    T  Y++L 
Sbjct: 750 CLVNGQKTPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDELPVTILADKLNTIPYEILT 808

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 809 SVSNRVKRIY 818


>gi|49474549|ref|YP_032591.1| alanine racemase [Bartonella quintana str. Toulouse]
 gi|49240053|emb|CAF26478.1| Alanine racemase [Bartonella quintana str. Toulouse]
          Length = 372

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 189/364 (51%), Gaps = 14/364 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID++A+  N+ ++      A  +AVVK NAYGLG +KIAPALY AG + FFV  +EE 
Sbjct: 19  ATIDVSAIVANYKTLAQRVAPAECSAVVKANAYGLGADKIAPALYRAGCRIFFVAQIEEA 78

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++L+   P    + +L G     E+ I    ++PV++S   +  + KL        P  +
Sbjct: 79  LQLKDILPSNVTLALLNGPPHATEEFIAQAGIVPVLNSWNAIENWQKLCQKKDKKFPAII 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E           +  ++  I+SHLA  DD +   N  QL  F+T++
Sbjct: 139 QIDTNMNRLGLDKKELQQLIKKPTIFEKAEIKYILSHLANGDDATHSSNYTQLAAFKTVL 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +      AS A+S GI LGP+++F L RPGI+LYG   +       + V+  EA++I  R
Sbjct: 199 TQLPTCRASFANSGGIFLGPDFYFDLVRPGIALYGIDPQGKHPTLFKPVLKLEAQVIQSR 258

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V Y       R S +   +IGYADG+   LS             G  +  G+ 
Sbjct: 259 SIEAGIPVGYEESFITRRPSTLITISIGYADGWLRILSN-----------KGTVYFNGHK 307

Query: 307 VPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +PI+G+I+MD    D T+     + GD++++ GP   L  V++ + T  +++L  +G+RY
Sbjct: 308 LPIVGRISMDSMTVDATNLDKKPQSGDWVELIGPHQTLKKVSIDANTIPHEILTSLGSRY 367

Query: 366 AKFY 369
            + Y
Sbjct: 368 QRIY 371


>gi|226310176|ref|YP_002770070.1| amino acid racemase [Brevibacillus brevis NBRC 100599]
 gi|226093124|dbj|BAH41566.1| probable amino acid racemase [Brevibacillus brevis NBRC 100599]
          Length = 574

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 106/381 (27%), Positives = 171/381 (44%), Gaps = 31/381 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                I L  L++N   +   L  +    AVVK  AYG G  +IA  L   G+  F V +
Sbjct: 206 RAWADIHLPHLQHNVREIQQVLPKDCAMMAVVKAQAYGHGGWQIARFLNKLGIDHFAVAT 265

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++EG++LR    +  I VL      + + I    L   +       +   L    V  P 
Sbjct: 266 IDEGIELRKKGVKGEILVLGYTDERRIRQIARFKLTQTVVD---DEYAQTLNGYNVKIPV 322

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLER 181
            +++DTG  RLG S  E  +     +  K  Q+    +HL+ AD            Q++R
Sbjct: 323 HIKIDTGMGRLGESW-EYTEKIAAMYRYKHLQVCGTFTHLSVADSLEASDIAYTKNQIDR 381

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPM 232
           F+ +I     KGI      + SS G+L      +   R GI+LYG      DK+  S  +
Sbjct: 382 FQNVIEQLKEKGINPQKLHVQSSYGVLNYGELQYDYARMGIALYGMLSKQGDKVKTSIDL 441

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +AR++ +++   G  V YG      +DS IA+ +IGYADG P  LS        
Sbjct: 442 RPVLSLKARVVQVKQVEKGAPVGYGRAHTAQKDSKIAIVSIGYADGVPRMLS-------- 493

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
              +G    I+G   PI+G + MD  + DI+D   ++ G+ +   G     +I  +++A 
Sbjct: 494 --QVGATCLIRGKRRPIIGFVCMDQLIVDISDIEEVQRGEVVTFIGRDQEEEITAEEMAQ 551

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           +  T   +L+ R+G R  + Y
Sbjct: 552 SCKTITNELVSRLGERVKRVY 572


>gi|28377409|ref|NP_784301.1| alanine racemase [Lactobacillus plantarum WCFS1]
 gi|254555592|ref|YP_003062009.1| alanine racemase [Lactobacillus plantarum JDM1]
 gi|300768938|ref|ZP_07078829.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179615|ref|YP_003923743.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|3913026|sp|O08445|ALR_LACPL RecName: Full=Alanine racemase
 gi|2190422|emb|CAA70140.1| alanine racemase [Lactobacillus plantarum]
 gi|28270241|emb|CAD63142.1| alanine racemase [Lactobacillus plantarum WCFS1]
 gi|254044519|gb|ACT61312.1| alanine racemase [Lactobacillus plantarum JDM1]
 gi|300493459|gb|EFK28636.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045106|gb|ADN97649.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 375

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 92/382 (24%), Positives = 157/382 (41%), Gaps = 29/382 (7%)

Query: 3   SNEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   ++ +DL A+K N  + M          AVVK N YG G  ++A A   AG   F 
Sbjct: 6   EHRHTQVTVDLQAIKTNISNEMAQKDELTELWAVVKANGYGHGIIQVAQAAKEAGATGFC 65

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-- 119
           V  ++E + LR       I VL    P    ++ + ++   + +   LT  + +++    
Sbjct: 66  VAILDEALALRAAGFAEPILVLGITEPEYAPLVAEKDISLAVGTQDWLTTAAAILAANQV 125

Query: 120 -VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK--LGQLSLIISHLACADDPSSHVNS 176
                  L +DTG  R+G    E L     +  +         I +H A AD       +
Sbjct: 126 TTPLHVHLALDTGMGRIGFQTPEELATAVTTLRQPQSPFDFEGIFTHFATADQADDTYFT 185

Query: 177 VQLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHP 231
            QL  ++ LI+    +     +++S+  L     +  + R G++LYG      +    +P
Sbjct: 186 HQLNNWKHLIAVVDELPRYVHVSNSATSLWHQACNGNMVRFGVALYGLNPSGRELSAPYP 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +Q  ++  AR+  +++   G+ VSYG      +D  I    IGYADGY   L G      
Sbjct: 246 LQPALSLTARLTFVKRLARGKSVSYGATYTAAQDEWIGTVPIGYADGYERRLQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     + G    I+G++ MD  M  +     + VG  + + G D    I L D+A
Sbjct: 301 -------HVLVDGEFCEIVGRVCMDQLMVRLPH--EVPVGAKVTLVGTDGARTISLQDIA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT +Y++   +  R  + Y
Sbjct: 352 DYCGTIHYEIACGLAPRVPRVY 373


>gi|188533687|ref|YP_001907484.1| Alanine racemase, catabolic [Erwinia tasmaniensis Et1/99]
 gi|226711042|sp|B2VJ52|ALR_ERWT9 RecName: Full=Alanine racemase
 gi|188028729|emb|CAO96591.1| Alanine racemase, catabolic [Erwinia tasmaniensis Et1/99]
          Length = 356

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 97/368 (26%), Positives = 163/368 (44%), Gaps = 22/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   I+  AL+ N       +G +R  +VVK NAYG G +++  +L       F + 
Sbjct: 2   SRPIVATINRAALRQNLAIARQAAGGSRLWSVVKANAYGHGIDRVWQSLAE--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G   P   +I+    L   + S  Q+   ++        
Sbjct: 60  NLEEAILLRERGWKKPILLLEGFFHPADLEILDRYRLTTSVHSNWQIKALAEA-KLSAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++++G NRLG   ++  +      + K      +++H A A+       +  L+R 
Sbjct: 119 DIYLKMNSGMNRLGFQPEQVNNAWQKLRSLKNVGELTLMAHFADAESTEG--VAEPLKRI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SLA+S+  L  P  H    RPGI LYG +            +Q V+T 
Sbjct: 177 EQAAEGLEC-PRSLANSAATLWHPQTHHDWVRPGIILYGASPSGRWQDIAGSGLQPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II +++  AG  V YG + + +    I V A GYADGYP                G 
Sbjct: 236 TSEIIGVQQLAAGSCVGYGSRYRASGSQRIGVVACGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G M  ++G ++MDM   D+T      +G  ++++G  +K+DDVA ASGT  Y+L+
Sbjct: 285 PIRVDGEMTQVVGAVSMDMITVDLTPCPQAGIGSQVELWGNSVKIDDVASASGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALAQRVP 352


>gi|315613615|ref|ZP_07888522.1| alanine racemase [Streptococcus sanguinis ATCC 49296]
 gi|315314306|gb|EFU62351.1| alanine racemase [Streptococcus sanguinis ATCC 49296]
          Length = 367

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIYLGAIRKNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVATAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      ++ +L         +  + ++   ++ +  +       +     
Sbjct: 65  SNIDEAIELRQAGISKKLLILGVSEIEAVSLAKEYDITLTVAGLEWIQALLVRETDLSGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +       +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 SVHLKIDSGMGRIGFRDSSEAEQAQALLQQHGARVEGIFTHFATADEESDSYFNTQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + +++  K +      ++S+  L      F   R G ++YG       +N  + +   ++
Sbjct: 185 KAILASMKEVPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLNLPYDLTPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGTCMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKIYPL--GTKVTLIGSNGDKEITATQVAAYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|161613692|ref|YP_001587657.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168820548|ref|ZP_02832548.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|161363056|gb|ABX66824.1| hypothetical protein SPAB_01417 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205342561|gb|EDZ29325.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320085692|emb|CBY95470.1| alanine racemase 2, catabolic [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 356

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++ S  L++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|218780053|ref|YP_002431371.1| alanine racemase [Desulfatibacillum alkenivorans AK-01]
 gi|218761437|gb|ACL03903.1| alanine racemase [Desulfatibacillum alkenivorans AK-01]
          Length = 363

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 172/369 (46%), Gaps = 21/369 (5%)

Query: 9   LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL +N+  +  L+    +  +VVK +AYG G ++ A  L + G     V    +
Sbjct: 6   LEIDLKALAHNYRVLADLAGPGTKMVSVVKADAYGHGLKQAARTLVDCGTYALGVFDPAD 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
              +R       I  L GI P + +     N+  VI S+      S+  +  G +    +
Sbjct: 66  AAVIRQEGIHVPIVSLSGIFPWEAEDAAKNNIDAVIFSMEAAQALSQAFLEKGETGNVII 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VDTG  RLG+  ++   F       K  +++ I SHLA ++ P       Q+E FR+  
Sbjct: 126 KVDTGMGRLGIFPEDLPAFVEALAPLKGIRVTGIASHLAASEIPDHPHTKSQVEAFRS-- 183

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAEARIIL 244
           +    I  +LA+S  +L G      L RPGI+LYG             + V+T + RII 
Sbjct: 184 ASLSMINDTLANSGAVLEGLAKGVPLARPGIALYGSAPDPEMKGADLLKPVMTFKTRIIS 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           ++    G  +SYG     +R SLIA   +GYADGY   L+             G   + G
Sbjct: 244 LKTLPKGSPISYGMTFTTSRPSLIAAVPVGYADGYFRRLAN-----------KGVAIVHG 292

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVR 360
             VP++G + M++TM D+T    ++ GD + + G      +  D++A ++GT +Y++   
Sbjct: 293 KRVPVVGTVCMNLTMLDVTGLDEVQPGDEVVLLGEKDGQRVTGDELAASAGTISYEIYCS 352

Query: 361 IGTRYAKFY 369
           +G    + Y
Sbjct: 353 LGHANPRQY 361


>gi|182684640|ref|YP_001836387.1| alanine racemase [Streptococcus pneumoniae CGSP14]
 gi|182629974|gb|ACB90922.1| alanine racemase [Streptococcus pneumoniae CGSP14]
          Length = 374

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 13  HRPTKALIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 72  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 131

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   K    +  I +H A AD+ S    + QLERF
Sbjct: 132 TVHLKIDSGMGRIGFREVSEVEQAQDLLQKHGVCVEGIFTHFATADEESDDYFNAQLERF 191

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 192 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 251

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 252 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 301

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 302 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 357

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 358 NYEVVCLLSDRIPREY 373


>gi|330684788|gb|EGG96481.1| alanine racemase [Staphylococcus epidermidis VCU121]
          Length = 382

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 167/382 (43%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L IDL A+ +N+ + + L  N    +V+K N YGLG  +IA  L   G   
Sbjct: 2   SEKFYRSTYLNIDLNAILSNYQTFDKLHANQTVISVIKANGYGLGSVRIAQHLMENGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSC 118
           F V +++E ++LR++  +A+I +L  I P          +   + S          +   
Sbjct: 62  FAVATLDEAIELRMHGIKAKILILGVIPPKDINKAIQHRVALTVPSKSWLKESIKNISDE 121

Query: 119 GVSHPY-ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                +  L++DTG  RLG+  ++E  +               + +H ACAD+P   + +
Sbjct: 122 NEKALWLHLKLDTGMGRLGMKDVEEYKEVVDIISKYDQLVFEGVYTHFACADEPGDSM-A 180

Query: 177 VQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231
            Q ++F+ L+    K       +S+G LL         R GISLYG         N    
Sbjct: 181 TQYQKFKELVEQVEKPTYIHTQNSAGALLMDGQFCNAIRLGISLYGYYPSEYVKENVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      + I+  +    G+ VSYG     T  + IAV  IGYADGY  ++ G      
Sbjct: 241 LKPSAQLVSEIVQTKTLNVGDSVSYGSTYTATEPTRIAVLPIGYADGYLRSMQGS----- 295

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                     + G+   ++G++ MD TM  I D+  ++VGD + +       D  ++ +A
Sbjct: 296 -------CVNVNGHQCEVIGRVCMDQTMVKIPDT--VKVGDKVILLDNHVDTDQSVEALA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L  +  R  + Y
Sbjct: 347 KQQDTINYEVLCNLSRRLPRIY 368


>gi|146312008|ref|YP_001177082.1| alanine racemase [Enterobacter sp. 638]
 gi|145318884|gb|ABP61031.1| alanine racemase [Enterobacter sp. 638]
          Length = 356

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 103/368 (27%), Positives = 162/368 (44%), Gaps = 22/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +  ++DL ALKNN   +   +  +R  +VVK N YG G E I  AL       F + 
Sbjct: 2   SRPILAQLDLQALKNNLQIVRRAAPGSRVWSVVKANGYGHGIESIWSALSA--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G     E  + D   L   + S  Q+             
Sbjct: 60  NLEEAILLRERGWKGPILLLEGFFHADELPLLDKYRLTTSVHSNWQIKALQNA-KLHSPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++++G NRLG   +            K      +++H A A+ P    N++   R 
Sbjct: 119 DIYLKMNSGMNRLGFQPERVNTVWQQLRAIKNVGEMTLMAHFADAEKPDGITNAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                       SL++S+  L  P  H+Q  RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGL-DCARSLSNSAATLWHPEAHYQWVRPGIVLYGASPSGQWQDIANSGLKPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II I+   AG+ V YG + + T +  I + A GYADGYP                G 
Sbjct: 236 RSEIIGIQTLKAGDTVGYGSRYRSTGEQRIGIVAGGYADGYPRLA-----------PSGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             +I G     +G I+MDM   D+T      +G  ++++G ++K+DDVA A+GT  Y+LL
Sbjct: 285 PVWIDGVRTGTVGTISMDMMAIDLTPCPQAGIGSPVELWGNEVKVDDVASAAGTVGYELL 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 TALAPRVP 352


>gi|327403145|ref|YP_004343983.1| Alanine racemase [Fluviicola taffensis DSM 16823]
 gi|327318653|gb|AEA43145.1| Alanine racemase [Fluviicola taffensis DSM 16823]
          Length = 762

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 182/373 (48%), Gaps = 23/373 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I+L+A+K+N     +      +  A+VK ++YG G +K+AP L  +G+++F V   +E
Sbjct: 400 VEINLSAIKHNVSFYQSRIPKEVKILAMVKASSYGSGADKVAPFLQQSGIRNFGVAFADE 459

Query: 68  GVKLRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSH-P 123
           GV+LR       + I V+    P    +I +  L P I S  Q   F + L+   +S  P
Sbjct: 460 GVELRKAGIGISSSIVVMNP-DPEHSDLIIEYRLEPAIYSFEQLDEFITALIHKQISAYP 518

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERF 182
             L+ DTG +RLG +  +         ++   ++  I SHLA AD+P        QL  F
Sbjct: 519 IHLKFDTGMHRLGFAPSDKERILAIINSQPEVKIQGIYSHLADADNPIHSEFTQKQLTSF 578

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
            +++S+++        A + +S G L  P   + + R GIS+YG T+       +Q  V+
Sbjct: 579 ESIVSYFRTNSSDSFLAHILNSEGSLRYPESCYDMIRLGISMYGYTENNQLKASLQGSVS 638

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I  I+    G+ + YG   +   D  IA+  +GYADG+  +LS             
Sbjct: 639 WYSSISQIKAVPKGDFIGYGISYQAIEDMTIAIIPVGYADGFRRSLSN----------GK 688

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           G  FI G   P++G++ MDM M DI+ S+  ++ D ++I G +  ++  A +  T  Y++
Sbjct: 689 GSVFIHGIKCPVVGRVCMDMIMVDIS-SVDAKINDSVEIIGQNQPMEVFAKSMETIPYEV 747

Query: 358 LVRIGTRYAKFYT 370
           +  +  R  + Y 
Sbjct: 748 MTGLSKRMHRVYV 760


>gi|255994095|ref|ZP_05427230.1| alanine racemase [Eubacterium saphenum ATCC 49989]
 gi|255993763|gb|EEU03852.1| alanine racemase [Eubacterium saphenum ATCC 49989]
          Length = 382

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 175/379 (46%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               ++I L  + +N   +  ++G ++  A+VK +AYG G  +I+  L + G+  F + +
Sbjct: 14  RSAWMEISLANILHNVKEIQKIAGKSKIIAMVKADAYGHGATEISTFLADNGIDYFAIAT 73

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           ++EG++LR       I +L  +      II + + +P+++S+      S+   S G    
Sbjct: 74  LKEGIELRRAGLNKNIILLSPVDNYYADIIVENDFMPIVTSLDNAKALSETAKSYGKVLS 133

Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG  R+G     EA+D            +  ++SHL+ + +     + +QL++F
Sbjct: 134 IMIALDTGMGRIGYLPNPEAIDEITKIAKLDDIHIKGLLSHLSSSPETDKSYSYMQLDKF 193

Query: 183 RTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234
           +        KGI     ++A+S  I+   +      RPGI +YG   +   +      + 
Sbjct: 194 KDFTEKLKSKGINPEIKTIANSGAIVSMRDMMLDAIRPGILIYGYFPEDTCTCDDLDLKP 253

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++ +A II +++   G   SYG +    +DS+I    +GYADGYP   SG         
Sbjct: 254 ALSVKANIIHMQRVKKGFCCSYGRKFVAKKDSIIGTIPVGYADGYPANYSG--------- 304

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               K  + G   PI G I MD+ M D+TD  + +VGD + + G D    I   D+   S
Sbjct: 305 --NAKVIVNGKTAPIAGAICMDLCMIDLTDIENSKVGDEVILLGSDGKNTITALDIEKGS 362

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           G   Y++L   G R  K +
Sbjct: 363 GMFRYEILTGFGQRLPKQF 381


>gi|110640090|ref|YP_680300.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406]
          Length = 842

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 163/369 (44%), Gaps = 20/369 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L  + +   +VK  +YG G  +IA  L   GV    V   +E
Sbjct: 483 LEINLDALIHNLNVYRSKLKPDTKIMCMVKAFSYGSGGFEIAQLLQYHGVDYLAVAYADE 542

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           G +LR       I V+       +  I    L P I     L    +       H    +
Sbjct: 543 GARLRENGITLPIMVMNPTLSSFD-TILRYELEPEIYEPVLLKQIIEYAQAKQKHIGIHI 601

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTL 185
           ++DTG  RLG   ++  +      + +  ++  + +HLA +D        + QL  F  +
Sbjct: 602 KIDTGMKRLGFEKKDVTEIAQQLKHTEFVKVYSVFTHLAASDSAEHDAFTAHQLNLFDEV 661

Query: 186 ISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           IS ++           A+SSGI+     H+ + R GI LYG        + +Q +   + 
Sbjct: 662 ISLFQTTLNYSFIKHAANSSGIMRFKEAHYDMVRLGIGLYGVESAGLYQNELQAISVFKT 721

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I  I++    E V Y  + ++T+ S IA  A+GYADGY                  G+ 
Sbjct: 722 HISQIKEITTEESVGYSRKGRVTKPSKIATIAVGYADGYNRRFGNGI----------GEV 771

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G   PI+G + MDM+M D+TD+ + + GD + +FG +  + D+A   GT  Y++L  
Sbjct: 772 LVNGVRCPIIGNVCMDMSMVDVTDAHAAQ-GDEVILFGHNPTVSDLAKRIGTIPYEILTS 830

Query: 361 IGTRYAKFY 369
           +G R  + +
Sbjct: 831 VGARVKRIF 839


>gi|58040489|ref|YP_192453.1| alanine racemase [Gluconobacter oxydans 621H]
 gi|58002903|gb|AAW61797.1| Alanine racemase [Gluconobacter oxydans 621H]
          Length = 367

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 134/366 (36%), Positives = 206/366 (56%), Gaps = 18/366 (4%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             L + L A+  N++ + AL   A  A VVK +AYGL  +++AP L   G   FFV  ++
Sbjct: 15  AWLGVSLRAIAENYNLVAALGAGAECAVVVKADAYGLSADRVAPVLAARGAGTFFVAHLD 74

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           EG+ LR   P+ RIFVL+G  PG E  +   NL PV++ + Q+  + +L    G + P A
Sbjct: 75  EGIALRAILPEVRIFVLHGFMPGCEGSMQAHNLFPVLNDLEQVRSWQRLCREKGCAFPAA 134

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           LQ DTG +R GLS Q+  D        +   L L++SHLACAD P +  N++Q +RF  +
Sbjct: 135 LQFDTGMSRFGLSDQDLED----RSVFEGLNLQLVMSHLACADTPDNPANAIQRKRFVEM 190

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            + + G+  SLA+SSGI LGP+YHF+L RPG +LYG       S  +  VV+ +ARI+ I
Sbjct: 191 AAGFPGVPRSLAASSGIFLGPDYHFELIRPGAALYGIAP-FEGSRVLNPVVSLDARIVQI 249

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AG+ V YG     T+ + IA   +GYADG+    +G            G  +    
Sbjct: 250 RTVQAGDRVGYGLGWTATKPTRIATLGLGYADGFFRAQAGH-----------GAVWYGQT 298

Query: 306 MVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +P++G+++MD    D+TD+   ++ GD + + GP   +D +A ++GT  Y++L  +G+R
Sbjct: 299 RLPVIGRVSMDSISVDLTDAPAGLKAGDVLSVLGPAQDVDALARSAGTIGYEVLTALGSR 358

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 359 FHRVYV 364


>gi|319937488|ref|ZP_08011893.1| alanine racemase [Coprobacillus sp. 29_1]
 gi|319807328|gb|EFW03937.1| alanine racemase [Coprobacillus sp. 29_1]
          Length = 391

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 170/382 (44%), Gaps = 32/382 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   ++I+L AL+NN   ++ L     +  AVVK +AYG G  KI+  L   G+  F V 
Sbjct: 9   DRSWVEINLDALENNVQEISKLLRSRKQIMAVVKADAYGHGAIKISQELEKLGIDCFAVA 68

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +++E + LR       I +L    P    ++   +LI  +       +  +L +  +   
Sbjct: 69  TIDEAMILRQNHIHGDILILGFTAPHLAPLLLKYHLIQTVID---YDYGQQLNAMQLPLQ 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLE 180
             +++D+G +RLG    + L      F      +  + SHL  AD       H    Q  
Sbjct: 126 IHIKIDSGMHRLGADYHD-LTHIRRLFELPYLHVEGVFSHLCVADSSKMEDIHFTKQQFL 184

Query: 181 RFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--- 232
            F   I   +       +  + SS G+L  P+YH+   R GI+LYG     +        
Sbjct: 185 NFNQTIHQLQEFGYDVGKVHIQSSYGLLNYPDYHYDYARMGIALYGVQSSTDDYMKNHLN 244

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            Q V++ ++ I  +    AG  + YG    L +DSLIAV  +GYADG P  LS       
Sbjct: 245 LQPVLSIQSHIACLHHYPAGSSLGYGRTYTLEKDSLIAVVPLGYADGLPRQLS------- 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     ++G  +PI+G+I MD  M D+T    +++ D +   G +    I ++++A
Sbjct: 298 ----QNQDVLVRGKKIPIVGRICMDQLMIDVTSLKDVQLNDIVTFIGHNHQQTIGIEELA 353

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             + T + ++L RIG R  K Y
Sbjct: 354 KNAHTISNEILSRIGQRLPKVY 375


>gi|296101876|ref|YP_003612022.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056335|gb|ADF61073.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 356

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 169/371 (45%), Gaps = 28/371 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +  ++DL ALK+N   +   +  +R  +VVK NAYG G ++I  AL       F + 
Sbjct: 2   SRPVLAQLDLQALKDNLQIVRRAAPGSRVWSVVKANAYGHGIDRIWSALSA--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G     +  + D   L   + S  Q      +    +  
Sbjct: 60  NLEEAILLRERGWKGPILLLEGFFHADDLPLLDKYRLTTSVHSNWQ---IKAIQDAKLHA 116

Query: 123 P--YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QL 179
           P    L+V++G NRLG   +            K      +++H A A+ P    +++ ++
Sbjct: 117 PLDIYLKVNSGMNRLGFQPERVHTVWQQLRALKNVGEMTLMAHFADAEKPDGIADAMVRI 176

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235
           E+    +        SL++S+  L  P  H+   RPGI LYG +         +  ++ V
Sbjct: 177 EQAAEGLDC----PRSLSNSAATLWHPEAHYNWVRPGIVLYGASPSGQWQDIANSGLKPV 232

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  + II ++   AG+ V YG + + T +  I + A GYADGYP               
Sbjct: 233 MTLRSEIIGVQTLKAGDTVGYGSRYRATGEQRIGIVAGGYADGYPR-----------IAP 281

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G   ++ G     +G ++MDM   D+T      +G  ++++G ++K+DDVA A+GT  Y
Sbjct: 282 SGTPVWVDGVRTGTVGTVSMDMLAVDLTPCPQAGIGSPVELWGNEVKIDDVAAAAGTVGY 341

Query: 356 DLLVRIGTRYA 366
           +L+  +  R  
Sbjct: 342 ELMCALAPRVP 352


>gi|332140005|ref|YP_004425743.1| alanine racemase [Alteromonas macleodii str. 'Deep ecotype']
 gi|254802359|sp|B4S1A6|ALR_ALTMD RecName: Full=Alanine racemase
 gi|327550027|gb|AEA96745.1| alanine racemase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 358

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 101/368 (27%), Positives = 180/368 (48%), Gaps = 18/368 (4%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +  I   AL +N+ ++ A++ ++++ AVVK +AYG G   +A  L +     F V 
Sbjct: 2   SRQTQAIIHADALLHNFKALAAIAPSSQSMAVVKADAYGHGAVNVARILQHVS-SQFAVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + LR     A + VL G H  +E ++ F  N I V+    QL + +         
Sbjct: 61  IIEEAIALRDAGISAPVVVLEGAHQAKECQMAFQHNCILVMHCEEQLQWLNN-CPENQRP 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+VD+G +RLG ++ +  D T    +  L + ++I +H ACADD  +   + QL  F
Sbjct: 120 HIWLKVDSGMHRLGFAISDIEDMTKKYRHL-LSEQTVIATHFACADDVDNGFTASQLSAF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVVTAEA 240
           +  ++   G+  S+A+S   +  P       R G+ +YGG      +  ++    +T  +
Sbjct: 179 KR-VADAIGLPTSVANSPATVNWPASRNAWNRLGVGVYGGAVSTANNVGVEIYPAMTLRS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I+ +R   AGE V YG +   ++ S IA   IGYADGYP                    
Sbjct: 238 SILAVRTIAAGEGVGYGQRWVASKPSKIATVGIGYADGYPRHCKN-----------KTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            ++G    + G+++MDM   D+T   ++ VGD ++++G ++ + +VA  + T +Y+L+ R
Sbjct: 287 MVRGKRAFLAGRVSMDMITIDVTHIDNVSVGDEVELWGQNVPIQEVAACADTIDYELMTR 346

Query: 361 IGTRYAKF 368
           +  R  + 
Sbjct: 347 VSQRVPRI 354


>gi|284037156|ref|YP_003387086.1| alanine racemase [Spirosoma linguale DSM 74]
 gi|283816449|gb|ADB38287.1| alanine racemase [Spirosoma linguale DSM 74]
          Length = 835

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 107/382 (28%), Positives = 163/382 (42%), Gaps = 33/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           L+I+L AL +N +               +   +VK  AYG G  ++A  L    V    V
Sbjct: 461 LEINLDALTHNLNYYRERISRNDGPSETKIMVMVKAFAYGSGSAEVAQLLQFHRVDYLAV 520

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
              +EGV LR       I V+    P     + +  L P I S+  L  + + +      
Sbjct: 521 AYADEGVSLRQNGVDLPIMVMNPA-PETFSTLLEYKLEPEIYSLRLLREWEEFLRSREHA 579

Query: 123 ---------PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-S 172
                    P  L++DTG +RLG   +E    T     +    ++ + SHL  ADD   +
Sbjct: 580 FANTQSTTYPIHLKIDTGMHRLGFLERELTVVTDFLKRQPNLHVATVFSHLVGADDAQFN 639

Query: 173 HVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
             +  Q E F                  L +S+GI+  P+Y   + R GI LYG      
Sbjct: 640 PFSRQQYETFLRCTEFLGAELGYMPTRHLLNSAGIVRFPDYKLDMVRLGIGLYGVEATGT 699

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           +   +QTV T    +  I+   AGE V Y  +  L  D+ IA  AIGYADGY   L    
Sbjct: 700 EQSALQTVGTLRTIVSQIKTVGAGESVGYSRRGVLDHDARIATLAIGYADGYDRRLGNGV 759

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347
                     G  ++ G   P +G + MDMTM D+T++ S+  GD + IFGP++ + ++A
Sbjct: 760 ----------GNVWVNGSYCPTVGSVCMDMTMIDVTNA-SVSEGDEVLIFGPELPITELA 808

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT  Y++L  +  R  + +
Sbjct: 809 RRIGTIPYEILTGVSERVKRVF 830


>gi|168241390|ref|ZP_02666322.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168462709|ref|ZP_02696640.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194451208|ref|YP_002045847.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194409512|gb|ACF69731.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195633999|gb|EDX52351.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|205339703|gb|EDZ26467.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 356

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIA-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLNAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|225869174|ref|YP_002745122.1| alanine racemase [Streptococcus equi subsp. zooepidemicus]
 gi|259710074|sp|C0MEB7|ALR_STRS7 RecName: Full=Alanine racemase
 gi|225702450|emb|CAX00342.1| alanine racemase [Streptococcus equi subsp. zooepidemicus]
          Length = 366

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 163/377 (43%), Gaps = 27/377 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     ++DL A++ N   +   L    +T AVVK NAYG G   ++ A+ +  V  + V
Sbjct: 6   HRPTVARVDLEAIQANIDKIQRHLPKKVKTYAVVKANAYGHGAVAVSKAVEDQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  I   + ++     L   ++S+  L    K        
Sbjct: 65  SNLDEALELRQAGIDKEILILGVILASELQLAIKHQLTITVASLEWLELAKKESVDFSQL 124

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++VD+G  R+G+ SL EA        +  + QL  I +H A AD+    +   QL  
Sbjct: 125 HVHVKVDSGMGRIGVRSLAEANQLISILSDMGV-QLDGIFTHFATADESDHAMFDKQLTF 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVV 236
           F+ L+       A    ++S+  L      F   R GI +YG     N      P++  +
Sbjct: 184 FKQLVEQLDKRPALVHASNSATSLWHSETIFSAIRLGIVIYGLNPSGNSLSLPCPLKEAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+R++ +++  AG+ V YG          +    IGYADG+   + G           
Sbjct: 244 SLESRLVHVKQIQAGDSVGYGASYVAAEPEYVGTLPIGYADGWTRNMQGF---------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             K  ++G    I+G+++MD     +T +    +G  + + G      I   DVA   GT
Sbjct: 294 --KVLVEGEFCDIIGRVSMDQLTIRLTKAYP--IGTKVTLIGQQGKQVITATDVADYRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++L  +  R  + Y
Sbjct: 350 INYEVLCLLSDRIPREY 366


>gi|207856691|ref|YP_002243342.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206708494|emb|CAR32815.1| Alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 356

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++ S  L++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLNAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|332967677|gb|EGK06788.1| alanine racemase [Kingella kingae ATCC 23330]
          Length = 399

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 103/372 (27%), Positives = 167/372 (44%), Gaps = 22/372 (5%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   L  +I L  L++N+  +    G  +  AVVK NAYG G  + A AL++     F V
Sbjct: 44  TMRPLVCEIRLEHLRHNYRILKEKHGG-KLLAVVKANAYGHGAVRCALALHDI-ADGFAV 101

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             +EE ++LR       I +L G    QE  +I   NL  V+ +  QL           S
Sbjct: 102 AFLEEAIELRENGITKPIVLLEGAFDAQEYHLIEQWNLWTVVHNQVQLEDLLAH-DWKQS 160

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L++D+G +R G                      + +SH ACADD    +  +Q+E 
Sbjct: 161 ATVWLKMDSGMHRAGFFPHHYAAAYTALSQSNKVGKIVKMSHFACADDAERGMTEIQIEA 220

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVT 237
           F    +   G E+SLA+S+ IL  P  H    R GI+LYG +   ++       ++ V+ 
Sbjct: 221 FDLACADLAG-ESSLANSAAILAYPEAHRDWGRAGIALYGISPFTDRAGCFDADLKPVMR 279

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +++   R     E + YG      R + + V A GYADGYP   +             
Sbjct: 280 LVSKVFAERVLQPHEPIGYGATFYTKRSTRVGVVACGYADGYPRATAND----------- 328

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               I G    ++G+++MDM   ++TDS    +G  +++FG  + +++VA A+GT +Y++
Sbjct: 329 TPVAINGIRSRLIGRVSMDMITVELTDSH-AGLGSEVELFGDVVNVNEVARAAGTISYEI 387

Query: 358 LVRIGTRYAKFY 369
              I  R  + Y
Sbjct: 388 TCNI-KRATRVY 398


>gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510]
 gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510]
          Length = 821

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 149/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR       I ++        K +FD  L P + S   L    K        + P  
Sbjct: 523 GSDLRKAGITCSIMIMNP-ELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + +E  +       +       + SHL  +D          Q+E F  
Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +++GI   P   F + R GI LYG     N    +  V T +
Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTN--QIIHNVSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I +    E V Y  +  L RDS IA   IGYADG    L                
Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD   IFG D+ +  ++    T  Y++L 
Sbjct: 750 CLVNGQKAPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 809 SVSNRVKRVY 818


>gi|269216099|ref|ZP_06159953.1| alanine racemase [Slackia exigua ATCC 700122]
 gi|269130358|gb|EEZ61436.1| alanine racemase [Slackia exigua ATCC 700122]
          Length = 435

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 98/388 (25%), Positives = 167/388 (43%), Gaps = 31/388 (7%)

Query: 3   SNEFLRLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
              +  ++IDL A+++N + +   L    R  AVVK + YG G  ++A    +AG     
Sbjct: 58  ERRWSWVEIDLGAIRHNTYANKRCLKPGTRLMAVVKADGYGHGAVQVARTALSAGASQLA 117

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120
           V +V+EG++LR     A I +L         ++   +++P + +      Y++L    G+
Sbjct: 118 VATVDEGIELRRAGIAAPILILSEPPASAAPLLLQHDIMPSVYTPEFAIAYAELADAHGM 177

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             PY L ++TG NR+G+   EA++F       +        +H A AD   +   ++Q  
Sbjct: 178 RAPYHLALNTGMNRIGVRHDEAVEFARQISFHRALDQVGTFTHFATADCAETLDFNLQFR 237

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
           RF   I   +  GI+      A+S+ +L  P  H  + R GISLYG     +   +  ++
Sbjct: 238 RFADAIEGMRVAGIDPGIVHCANSAALLRYPETHMDMVRMGISLYGFHPCPETRGAAVLK 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++  ARI  +      E V YG   + T    I    +GYADG+   LSG        
Sbjct: 298 PAMSVHARITAVNAPQLSEGVGYGLHYRSTGSVRICTVPVGYADGFARALSGR------- 350

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGP----DIK 342
                     G     +G I MD +MF++          L  +VGD + + G      + 
Sbjct: 351 ----TDFIYGGRRCHQVGNICMDQSMFEVDMRSLGTRPRLDPQVGDEVVVIGEKDGLSVG 406

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFYT 370
           ++++    GT  Y++   +  R  K Y 
Sbjct: 407 VEELCDVLGTIPYEVCCALAMRMPKVYV 434


>gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
 gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
          Length = 821

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 149/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR       I ++        K +FD  L P + S   L    K        + P  
Sbjct: 523 GSDLRKAGITCSIMIMNP-ELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + +E  +       +       + SHL  +D          Q+E F  
Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +++GI   P   F + R GI LYG     N    +  V T +
Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTN--QIIHNVSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I +    E V Y  +  L RDS IA   IGYADG    L                
Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD   IFG D+ +  ++    T  Y++L 
Sbjct: 750 CLVNGQKAPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 809 SVSNRVKRVY 818


>gi|78066817|ref|YP_369586.1| alanine racemase [Burkholderia sp. 383]
 gi|77967562|gb|ABB08942.1| Alanine racemase region [Burkholderia sp. 383]
          Length = 356

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 153/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++  AVVK NAYG G  +  P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG   ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYLPEKYRAAWERARACHGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
               +  G   SLA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAENIAGA-RSLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIAKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D++      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLSPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAGRVP 352


>gi|115352122|ref|YP_773961.1| alanine racemase [Burkholderia ambifaria AMMD]
 gi|115282110|gb|ABI87627.1| alanine racemase [Burkholderia ambifaria AMMD]
          Length = 356

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++   VVK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYAPEKYRAAWERARACPGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
               +  G   SLA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAENIAGA-RSLANSAAVLWHPDTHFDWVRPGIILYGASPSGLSADIADTGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNTLPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAGRVP 352


>gi|149918225|ref|ZP_01906717.1| alanine racemase [Plesiocystis pacifica SIR-1]
 gi|149820985|gb|EDM80392.1| alanine racemase [Plesiocystis pacifica SIR-1]
          Length = 402

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 187/380 (49%), Gaps = 27/380 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                 +D  AL +N  ++ A  G   R  AVVK + YG G  + A A  +AG     V+
Sbjct: 32  RPTWASVDEGALAHNLRTVQAHVGERCRVLAVVKADGYGHGAVESARAFVDAGAWGLAVS 91

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVS 121
            VEEGV+LR +  +A + VL G+HPG E +I    L PV+ S         +   S   +
Sbjct: 92  LVEEGVELRQHGVRAPVLVLSGVHPGSEDVIVHGALTPVVWSPQHFQLLTSAVRRSGAAT 151

Query: 122 HPYALQVDTGFNRLGLSLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVN-SVQ 178
            P  +++DTG +RLG+  ++       + +      ++  +++H ACADD    +  + Q
Sbjct: 152 LPVHIKIDTGMSRLGVLPEDLGALLDWYQAHAASELRIEGVMTHFACADDAEDALTSARQ 211

Query: 179 LERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPM 232
           LERF+  +     + I      + +S+G++     H  + RPGI+LYG G+ +  +   +
Sbjct: 212 LERFQACLRVLGERRIHPSIRHVCNSAGLVRFSEAHLDMVRPGIALYGAGSSRAVELPEL 271

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +   +R++ IR+  AG  VSYG ++ L R S + +  +GY DGYP T+SG       
Sbjct: 272 RMAMGVHSRLLGIRELPAGTAVSYGHRQVLDRPSRLGIVPVGYGDGYPRTMSGR------ 325

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I+G+  P++G ITMD++M D+T+      G+ + + G      I L ++A 
Sbjct: 326 -----AQMLIRGHRCPVVGNITMDLSMVDVTELPDAREGERVTLMGTQGRERIDLYELAD 380

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
            +    Y++   +  R  + 
Sbjct: 381 WAQLIPYEVTCGLSKRVPRR 400


>gi|319789312|ref|YP_004150945.1| alanine racemase [Thermovibrio ammonificans HB-1]
 gi|317113814|gb|ADU96304.1| alanine racemase [Thermovibrio ammonificans HB-1]
          Length = 357

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 166/367 (45%), Gaps = 26/367 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVE 66
             ++ L  L  N+  +  LSG  +  AVVK NAYG G   +A  L     V  F V +  
Sbjct: 4   WAEVHLDRLLYNYRQVEKLSGPKKLIAVVKANAYGHGSVAVARFLQEQTAVSAFAVATYA 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV+LR    Q  I V+      +     +  L+PV+    +L    +L       P+ +
Sbjct: 64  EGVQLREAGIQRPIIVMSSTLEEELGRAREFRLMPVVYDFWELERAKELE-----VPFHV 118

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG  RLG    +  +      + +  +L+ +++H   AD+      + Q + F   +
Sbjct: 119 KLDTGMGRLGFLPSQWQEL---LCSLRGAKLAGVMTHFPSADE-DPEFTAGQAKLFGEFV 174

Query: 187 SHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
              KG    +     +S+ + LG N  F  +R G++LYG          ++ V+  +ARI
Sbjct: 175 KALKGAFPKLWVHCDNSAALPLGLNGLFTHSRVGLALYGSKPFGGYPASLKQVMEVKARI 234

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +++   G  VSYG     +    + V + GYADG P +LSG            G   +
Sbjct: 235 ISVKELPPGHSVSYGRTYTTSGKERVGVVSFGYADGLPRSLSGR-----------GSFIV 283

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G   PI G++ MDMT+  +   ++ + G    + G ++  +++A  +GT  Y+L+ RI 
Sbjct: 284 NGRRCPIRGRVCMDMTVISLEGVVAGKGG-VATVTGLELPFEELARLAGTIPYELMCRIS 342

Query: 363 TRYAKFY 369
            R  + Y
Sbjct: 343 PRVERVY 349


>gi|328544029|ref|YP_004304138.1| Alanine racemase, biosynthetic [polymorphum gilvum SL003B-26A1]
 gi|326413773|gb|ADZ70836.1| Alanine racemase, biosynthetic [Polymorphum gilvum SL003B-26A1]
          Length = 415

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 144/366 (39%), Positives = 201/366 (54%), Gaps = 10/366 (2%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +D  A+ +NW ++   L   AR AA VK +AYG G      AL  +G   FFV    E
Sbjct: 49  LTVDTAAIADNWRALAGQLGPGARCAATVKADAYGCGIPATVRALAASGCDTFFVALPAE 108

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           G+ +R   P A I+VL G+ PG      +  L PV+ S+P+L  ++    S  V    A+
Sbjct: 109 GIAVREAAPGATIYVLDGLFPGTAPAYAEARLRPVLGSLPELEEWALFCRSRKVRLEAAV 168

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTG NRLGL+ QEA     +        L+L+ISHLAC  +P   +N  QLERFRTL 
Sbjct: 169 HVDTGMNRLGLTEQEAERLAGDRDLLDSFALALVISHLACGAEPGHPLNRQQLERFRTLS 228

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            H+     SLA+S+GI LG +YHF L RPGI+LYGG    +  +PM+ V   EARI+ +R
Sbjct: 229 GHFPDAVRSLANSAGIFLGADYHFDLVRPGIALYGGKALDSFDNPMRPVARVEARILQLR 288

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE V YG  + + RD+ +AV A GYADG      G D         GG G+I G+ 
Sbjct: 289 TVRAGEGVGYGLAQTVRRDTRLAVVAAGYADGLLRRAGGSDDR------PGGHGWIVGHR 342

Query: 307 VPILGKITMDMTMFDITDSLSI--EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           VP+ G+I+MDM   D+TD  +     G  +++ GP +   ++A  + T +Y+ L  +G R
Sbjct: 343 VPVFGRISMDMQALDVTDVPAALLRRGAMVELIGPHVAASELAAVADTIDYEYLTALGRR 402

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 403 FHRRYA 408


>gi|238912133|ref|ZP_04655970.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 356

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCACSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|297589866|ref|ZP_06948506.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8]
 gi|297576994|gb|EFH95708.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437516|gb|ADQ76587.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 390

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 166/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 10  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 70  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 129

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 130 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 185

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q  RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 186 MTTEQYHRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 245

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 246 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 304

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 305 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 351

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
             A    T NY++L  +  R  + Y
Sbjct: 352 VAAEKQHTINYEVLCNLSRRLPRIY 376


>gi|148994015|ref|ZP_01823371.1| alanine racemase [Streptococcus pneumoniae SP9-BS68]
 gi|168484889|ref|ZP_02709834.1| alanine racemase [Streptococcus pneumoniae CDC1873-00]
 gi|168488585|ref|ZP_02712784.1| alanine racemase [Streptococcus pneumoniae SP195]
 gi|147927482|gb|EDK78510.1| alanine racemase [Streptococcus pneumoniae SP9-BS68]
 gi|172041957|gb|EDT50003.1| alanine racemase [Streptococcus pneumoniae CDC1873-00]
 gi|183572801|gb|EDT93329.1| alanine racemase [Streptococcus pneumoniae SP195]
 gi|332072526|gb|EGI83009.1| alanine racemase [Streptococcus pneumoniae GA17570]
          Length = 367

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|49484296|ref|YP_041520.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257426208|ref|ZP_05602623.1| alanine racemase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428867|ref|ZP_05605261.1| alanine racemase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257434187|ref|ZP_05610537.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus E1410]
 gi|257437100|ref|ZP_05613140.1| alanine racemase [Staphylococcus aureus subsp. aureus M876]
 gi|258422928|ref|ZP_05685828.1| alanine racemase [Staphylococcus aureus A9635]
 gi|282904737|ref|ZP_06312611.1| alanine racemase [Staphylococcus aureus subsp. aureus C160]
 gi|282906415|ref|ZP_06314266.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909383|ref|ZP_06317198.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911637|ref|ZP_06319436.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914916|ref|ZP_06322696.1| alanine racemase [Staphylococcus aureus subsp. aureus M899]
 gi|282920247|ref|ZP_06327971.1| alanine racemase [Staphylococcus aureus subsp. aureus C427]
 gi|282925459|ref|ZP_06333113.1| alanine racemase [Staphylococcus aureus subsp. aureus C101]
 gi|283958850|ref|ZP_06376295.1| alanine racemase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293508989|ref|ZP_06667776.1| alanine racemase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510901|ref|ZP_06669600.1| alanine racemase [Staphylococcus aureus subsp. aureus M809]
 gi|293547502|ref|ZP_06672177.1| alanine racemase [Staphylococcus aureus subsp. aureus M1015]
 gi|295428657|ref|ZP_06821283.1| alanine racemase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|60389625|sp|Q6GF03|ALR1_STAAR RecName: Full=Alanine racemase 1
 gi|49242425|emb|CAG41139.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257270913|gb|EEV03086.1| alanine racemase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274209|gb|EEV05726.1| alanine racemase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280826|gb|EEV10971.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus E1410]
 gi|257283493|gb|EEV13620.1| alanine racemase [Staphylococcus aureus subsp. aureus M876]
 gi|257846952|gb|EEV70966.1| alanine racemase [Staphylococcus aureus A9635]
 gi|282312860|gb|EFB43261.1| alanine racemase [Staphylococcus aureus subsp. aureus C101]
 gi|282316107|gb|EFB46488.1| alanine racemase [Staphylococcus aureus subsp. aureus C427]
 gi|282321119|gb|EFB51450.1| alanine racemase [Staphylococcus aureus subsp. aureus M899]
 gi|282324402|gb|EFB54715.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326653|gb|EFB56951.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330365|gb|EFB59883.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594770|gb|EFB99747.1| alanine racemase [Staphylococcus aureus subsp. aureus C160]
 gi|283789568|gb|EFC28391.1| alanine racemase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919622|gb|EFD96695.1| alanine racemase [Staphylococcus aureus subsp. aureus M1015]
 gi|291094693|gb|EFE24965.1| alanine racemase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466186|gb|EFF08713.1| alanine racemase [Staphylococcus aureus subsp. aureus M809]
 gi|295127327|gb|EFG56967.1| alanine racemase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|315193230|gb|EFU23628.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 382

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 166/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 122 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 177

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q  RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 178 MTTEQYHRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 238 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 297 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
             A    T NY++L  +  R  + Y
Sbjct: 344 VAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|15903583|ref|NP_359133.1| alanine racemase [Streptococcus pneumoniae R6]
 gi|15459204|gb|AAL00344.1| Alanine racemase [Streptococcus pneumoniae R6]
          Length = 374

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 13  HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 72  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 131

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF
Sbjct: 132 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 191

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 192 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 251

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 252 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 301

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 302 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 357

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 358 NYEVVCLLSDRIPREY 373


>gi|169832829|ref|YP_001695074.1| alanine racemase [Streptococcus pneumoniae Hungary19A-6]
 gi|226711063|sp|B1I755|ALR_STRPI RecName: Full=Alanine racemase
 gi|168995331|gb|ACA35943.1| alanine racemase [Streptococcus pneumoniae Hungary19A-6]
          Length = 367

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKCLPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|116671442|ref|YP_832375.1| alanine racemase [Arthrobacter sp. FB24]
 gi|116611551|gb|ABK04275.1| alanine racemase [Arthrobacter sp. FB24]
          Length = 417

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 99/381 (25%), Positives = 160/381 (41%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL A+++N   + A++  A+  AVVK +AYG G   +A A   AG +   V  + E 
Sbjct: 36  AVIDLDAIRHNVRHLAAVASPAQVMAVVKADAYGHGAVPVARAALEAGARWLGVAHISEA 95

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    +A +                  +    S                     L+V
Sbjct: 96  LALRAAGIEAPLLAWLHTPDSNFGAAVAAGIDIGCSGWELEKIVLAAREQERPARVHLKV 155

Query: 129 DTGFNRLGLSLQEALDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G +L+        +    ++ L ++  I SHLA AD+P      +QL+ FR +
Sbjct: 156 DTGLGRNGATLEAWDSLVGEAMEYQDEGLLRVVGIFSHLAVADEPHRPETDLQLQAFREV 215

Query: 186 ISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237
           ++  +          LA++   L  P+ HF L R G+ +YG +    +S     ++  +T
Sbjct: 216 LAIAEDAGVDPEVRHLANTPATLSRPDTHFDLVRVGLGIYGLSPFEGQSPAELGLRPAMT 275

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
              ++   +   AG+ VSYG   +    S + +  +GYADG P             V  G
Sbjct: 276 VRTKVSHCKDVPAGQGVSYGLNYRTAGASTLGLIPLGYADGVPR------------VATG 323

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITD----SLSIEV-GDYIQIFGP----DIKLDDVAL 348
           G   ++G   P++G+I MD  + D+      S    V G    +FG         DD A 
Sbjct: 324 GPVRVEGRNYPVVGRIAMDQMVIDLGPRGVSSGGASVLGAEAVLFGDGTDGGPTADDWAR 383

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A+GT NY+++ RI  R  + Y
Sbjct: 384 AAGTINYEIVTRISPRVPRRY 404


>gi|330501639|ref|YP_004378508.1| alanine racemase [Pseudomonas mendocina NK-01]
 gi|328915926|gb|AEB56757.1| alanine racemase [Pseudomonas mendocina NK-01]
          Length = 358

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 108/369 (29%), Positives = 166/369 (44%), Gaps = 18/369 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL+A+ +N+      +   +  AVVK NAYG G  ++  AL++     F V  
Sbjct: 2   RPLAAIVDLSAIAHNYAVAKRCAPGRQAFAVVKANAYGHGVREVVTALHDL-ADGFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R    +AR+ +L G     E  I     L  VI    Q               
Sbjct: 61  LEEAAEVRAMHGEARVLLLEGCFEASEYAIAAQLGLDLVIQGAAQAEALLA-SDLVRPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG        +     N +      ++SH ACAD+    +   Q+ERF 
Sbjct: 120 VWLKLDSGMHRLGFDAANLRHWYARLENAEQVNELNLLSHFACADERGHPLTEQQVERFL 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
            L+        SLA+S+ +L  P  H    RPGI LYG T       +   ++  +T  A
Sbjct: 180 DLLD-LDFSHRSLANSAAVLTIPAAHMDWLRPGIMLYGATPFAELSARELGLKPAMTLAA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+I +R+   GE V YG      R S IA  + GYADGYP                G   
Sbjct: 239 RVIAVREVAIGESVGYGASWVAQRPSRIATVSCGYADGYPRHA-----------PSGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            ++G    + G+++MDM   DITD    +V   ++++G ++ LD+VA A  T  Y+LL +
Sbjct: 288 LVEGQRAALAGRVSMDMLTVDITDLPEADVDSPVELWGANLPLDEVAAACSTIGYELLSK 347

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 348 VTARVPRRY 356


>gi|291563798|emb|CBL42614.1| alanine racemase [butyrate-producing bacterium SS3/4]
          Length = 391

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 96/381 (25%), Positives = 165/381 (43%), Gaps = 27/381 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + +  ++DL  ++ N  +M   L    +   VVK +AYG G   +A  +    V  + V 
Sbjct: 4   DRIYAEVDLGRIEENMEAMKEHLRPGTKMYGVVKTDAYGHGAVPVARTIDRF-VCGYAVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSH 122
           +V+EG+KLR +  +  I  L  +  G+ +   + ++ +P               + G + 
Sbjct: 63  TVDEGLKLRRHGIEKEILSLGPVSAGRYQECLENDISLPFFEYRRAKELSDAAAAEGKTA 122

Query: 123 PYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + VDTG +R+GL   E  ++           +++ + +H A AD+        Q  R
Sbjct: 123 KIHIAVDTGMSRIGLFPDEGSVETVKEIAELPALRIAGMFTHFARADEADKTNAGEQYSR 182

Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---Q 233
           F       K           ++S+GI+  P+++    R GI++YG          +   +
Sbjct: 183 FHAFCDAVKAAGVDVPVCHCSNSAGIVELPDFNMDAVRAGITIYGLYPSDEVKQDIISLK 242

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +  ++ I  I++   G  VSYGG  K  +   IA  + GY DGYP  LSG        
Sbjct: 243 PAMALKSFITYIKEIGPGTEVSYGGTFKAEKTMRIATVSAGYGDGYPRNLSG-------- 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
               G+  I G    ILG+I MD  M D+T     + GD + + G D    I ++++A  
Sbjct: 295 ---KGEVLIHGKRAKILGRICMDQFMVDLTGIPEAKEGDSVTLVGRDGNQEITMEELAEI 351

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           SG  +Y++   IG R  + Y 
Sbjct: 352 SGGFHYEIPCLIGKRVPRRYV 372


>gi|225620639|ref|YP_002721897.1| alanine racemase [Brachyspira hyodysenteriae WA1]
 gi|225215459|gb|ACN84193.1| alanine racemase [Brachyspira hyodysenteriae WA1]
          Length = 366

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 105/372 (28%), Positives = 182/372 (48%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +IDL+AL  N   + ++  + +   +VK NAYG G  +I+ A    G     V +VEEG
Sbjct: 7   AEIDLSALNKNMQIIKSIIKDVKLLNIVKANAYGHGLIEISKASEKFGADALGVANVEEG 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQ 127
           +K+R    +  I VL+     +  ++   NL P+IS+   L +Y K L   G +    ++
Sbjct: 67  IKIREAGVKLPILVLFQHFKDESDLVCKYNLSPIISNDECLEYYDKFLKKNGGNLNLYIK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS---HVNSVQLERFRT 184
           VDTG NR+G   ++ +       +     +  I +H A +D          + Q++ F  
Sbjct: 127 VDTGLNRMGAKPEDVVPLAKKVLSYSTLNIEGINTHYAASDMQDDYSVSFTNKQIKVFND 186

Query: 185 LISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           +++     GI+   A  ++S+ I+   N +F + R GI LYG  D       ++ +++ +
Sbjct: 187 VLNDLNENGIKIKNAHTSNSAAIISYKNTYFDMVRAGIILYGYNDDF---LGIKPILSLK 243

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++L+R    GE +SYG      +D+ +AV  IGYADG P  LS              +
Sbjct: 244 SHVVLVRTIKKGESISYGMTWTADKDTRVAVIPIGYADGVPRKLSN-----------NWE 292

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASGTTNYDL 357
             I G   P+ G+I MD  + +I +  S+++GD + IFG D  +  D +A    + ++++
Sbjct: 293 VKINGKYYPLRGRICMDSIIAEIGND-SVKIGDEVLIFGNDEKLNADTLAARIDSISHEV 351

Query: 358 LVRIGTRYAKFY 369
           LV IG R  + Y
Sbjct: 352 LVNIGERVKRVY 363


>gi|29831510|ref|NP_826144.1| alanine racemase [Streptomyces avermitilis MA-4680]
 gi|29608626|dbj|BAC72679.1| putative alanine racemase [Streptomyces avermitilis MA-4680]
          Length = 391

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/391 (27%), Positives = 165/391 (42%), Gaps = 33/391 (8%)

Query: 1   MHSNE----FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M + E      R +IDL AL+ N  ++ A +  A   AVVK +AYG G    A A   AG
Sbjct: 1   MTTRETAPLRARAEIDLAALRANVRTLRAHAPAAALMAVVKSDAYGHGAIPCARAAVEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKL 115
                  + EE + LR      RI     +  G  +   D ++   +S +          
Sbjct: 61  ATWLGTATPEEALALRAAGLPGRIMCWLWVPGGPWREAIDADIDLGVSGLWALREVVEAA 120

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSS 172
              G      L+ DTG  R G   ++       +   +   L +++ + SHLACAD+P  
Sbjct: 121 AGAGAPARVQLKADTGLGRNGCQPEDWPGLVAEALRAEAAGLVRVTGLWSHLACADEPGH 180

Query: 173 HVNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                QL  FR ++++ +  G+      +A+S   L  P+ HF L R GI++YG +    
Sbjct: 181 PSIEAQLALFRQMVAYAERQGVRPEVRHIANSPATLTLPDSHFDLVRTGIAVYGISPSPE 240

Query: 228 ----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                   ++ V+T  A + L++    G  VSYG        + + +  +GYADG P   
Sbjct: 241 LGVPADFGLRPVMTLAASLALVKHVPGGHGVSYGHHYVTPGATTLGLVPVGYADGIPRHA 300

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---- 339
           SG            G   I G    + G+I MD  + D+        G    +FGP    
Sbjct: 301 SGS-----------GPVLIGGKWRTVAGRIAMDQFVVDLGGDEP-GAGAEAVLFGPGDRG 348

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +   +D A A+GT  Y+++ RIGTR  + Y 
Sbjct: 349 EPTAEDWAKAAGTIAYEIVTRIGTRVPRVYV 379


>gi|307705415|ref|ZP_07642272.1| alanine racemase [Streptococcus mitis SK597]
 gi|307621014|gb|EFO00094.1| alanine racemase [Streptococcus mitis SK597]
          Length = 367

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 157/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPEGTLKFAVVKANAYGHGAVAVATAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + ++   ++ +  +       +     
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSELEVVSLAKEYDITLTVAGLEWIQALLDKEADLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +   +   +   ++  I +H A AD+ S    +VQLERF
Sbjct: 125 TVHLKIDSGMGRIGFREAREAEQAQDLLQQHGARVEGIFTHFATADEESDDYFNVQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +++++  K +      ++S+  L      F   R G ++YG       ++  + +   + 
Sbjct: 185 KSILASMKEVPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGDALDLPYDLTPALF 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVSAGAYMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + +     G +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGGKEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|237750219|ref|ZP_04580699.1| alanine racemase [Helicobacter bilis ATCC 43879]
 gi|229374113|gb|EEO24504.1| alanine racemase [Helicobacter bilis ATCC 43879]
          Length = 375

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 154/380 (40%), Gaps = 26/380 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            ++   I      +N   +            V+K +AYG G  K+       G+    V 
Sbjct: 8   RYVYANIHTDHFLHNLKLIREYVPQRTYLMLVLKADAYGHGALKLGKLALTHGIYQVGVA 67

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           + +E ++LR +  QA+I VL    P         ++   +  +      +K         
Sbjct: 68  TFDEAMELREHLTQAKILVLGYTPPSVVDEAIKHDIELCVYDIDMARELNKSAKRQNKQA 127

Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +++DTG NR+G     ++L+  H         +  I +H A A D      ++Q ER
Sbjct: 128 KIHIKLDTGMNRIGYQCDSKSLNEIHEIAKLSNVFIRGIFTHFASA-DCDLGYLNLQYER 186

Query: 182 FRTLISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTV 235
           F   +S     E      A+S+ I+     H  + R GI  YG              + V
Sbjct: 187 FCAFVSLLPKHEDTLLHCANSASIMNASKTHLDMVRLGIIAYGLKPSFAMDMQGLELKPV 246

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  A I+ I++    E VSYGG     + + IA   +GYADGY   LS           
Sbjct: 247 MSFRAHIVHIKEVDTNECVSYGGTFITHKKTKIATLPVGYADGYMRLLSN---------- 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALAS 350
              +  I+G    ++G I MD  M D++D   ++VGD   +FG D     + +D++A   
Sbjct: 297 -KAEVLIRGKRARVIGNICMDQCMVDVSDIEEVKVGDCAVLFGYDDFGNILSVDELAAHI 355

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           GT NY+L   +  R A+ Y 
Sbjct: 356 GTINYELTCAVSKRVARVYV 375


>gi|172060986|ref|YP_001808638.1| alanine racemase [Burkholderia ambifaria MC40-6]
 gi|171993503|gb|ACB64422.1| alanine racemase [Burkholderia ambifaria MC40-6]
          Length = 356

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++   VVK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYAPEKYRAAWERARACPGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
               +  G   SLA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAENIAGA-RSLANSAAVLWHPDTHFDWVRPGIMLYGASPSGLSADIADTGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAGRVP 352


>gi|16765143|ref|NP_460758.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56413279|ref|YP_150354.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|167993251|ref|ZP_02574346.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168259965|ref|ZP_02681938.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|197362204|ref|YP_002141841.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|113661|sp|P06191|ALR2_SALTY RecName: Full=Alanine racemase, catabolic
 gi|153939|gb|AAA27054.1| alanine racemase (dadB) (EC 5.1.1.1) [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16420333|gb|AAL20717.1| alanine racemase 2 [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56127536|gb|AAV77042.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093681|emb|CAR59151.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205328703|gb|EDZ15467.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205350739|gb|EDZ37370.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|261246987|emb|CBG24804.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993756|gb|ACY88641.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158326|emb|CBW17825.1| Alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912792|dbj|BAJ36766.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224435|gb|EFX49498.1| Alanine racemase, catabolic [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322616798|gb|EFY13706.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620391|gb|EFY17257.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625707|gb|EFY22526.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626157|gb|EFY22967.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322638917|gb|EFY35610.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640736|gb|EFY37386.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644122|gb|EFY40667.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649194|gb|EFY45632.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655353|gb|EFY51661.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660890|gb|EFY57121.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662812|gb|EFY59019.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667996|gb|EFY64155.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674242|gb|EFY70336.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675403|gb|EFY71477.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683182|gb|EFY79198.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686875|gb|EFY82853.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323130076|gb|ADX17506.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195234|gb|EFZ80414.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200174|gb|EFZ85260.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203827|gb|EFZ88845.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207381|gb|EFZ92329.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213735|gb|EFZ98517.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217366|gb|EGA02085.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220884|gb|EGA05320.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227984|gb|EGA12132.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231387|gb|EGA15500.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235827|gb|EGA19906.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240396|gb|EGA24439.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245289|gb|EGA29289.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249860|gb|EGA33759.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252850|gb|EGA36686.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257434|gb|EGA41128.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263314|gb|EGA46850.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266762|gb|EGA50248.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268968|gb|EGA52424.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|332988689|gb|AEF07672.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 356

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|282917419|ref|ZP_06325172.1| alanine racemase [Staphylococcus aureus subsp. aureus D139]
 gi|282318621|gb|EFB48978.1| alanine racemase [Staphylococcus aureus subsp. aureus D139]
          Length = 382

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 166/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGITAKILVLGVLPVKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 122 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 177

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q + F+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 178 MTTEQYQCFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKI 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 238 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 297 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
             A    T NY++L  +  R  + Y
Sbjct: 344 VAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|108798118|ref|YP_638315.1| alanine racemase [Mycobacterium sp. MCS]
 gi|119867214|ref|YP_937166.1| alanine racemase [Mycobacterium sp. KMS]
 gi|126433776|ref|YP_001069467.1| alanine racemase [Mycobacterium sp. JLS]
 gi|108768537|gb|ABG07259.1| alanine racemase [Mycobacterium sp. MCS]
 gi|119693303|gb|ABL90376.1| alanine racemase [Mycobacterium sp. KMS]
 gi|126233576|gb|ABN96976.1| alanine racemase [Mycobacterium sp. JLS]
          Length = 383

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 166/389 (42%), Gaps = 31/389 (7%)

Query: 1   MHSNEF-----LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
           M ++E       ++ +DL A+ +N   +   +G+A+   V+K + YG G  ++A  + +A
Sbjct: 1   MQTSETTVTPTAQVVVDLDAISHNVALLRDRAGSAQVMPVLKADGYGHGATEVAKVVLDA 60

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSK 114
           GV +  V +V E + LR     A +                 ++   +SSV Q       
Sbjct: 61  GVTELGVATVGEALALRADGITAPVLAWLHGPGTDFAPAVQADIQLAVSSVRQLGEILDA 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPS 171
           +   G++    ++ DTG +R G+S  E             +   ++  I+SHLAC D+P 
Sbjct: 121 VHRTGMTATLTVKADTGLSRNGVSPAEYPALLQRLAKAQAEDAVRVRGIMSHLACGDEPD 180

Query: 172 SHVNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
           +  N  Q +R   +             A L +S   +  P+  F + RPGI++YG T   
Sbjct: 181 NPTNDRQAQRLTDMRRQAADAGVTFEVAHLCNSPAAMTRPDLAFDMVRPGIAVYGQTPIP 240

Query: 227 N-KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 ++  +T    +   R   AG+ VSYG      RD+ +A+  IGYADG   +LSG
Sbjct: 241 ALGDMGLRPAMTLRCPVAQTRSIKAGDGVSYGHTWIAQRDTTVALLPIGYADGVYRSLSG 300

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----D 340
                        +  I G + P +G+I MD  + D+      +  GD   +FGP    +
Sbjct: 301 RL-----------QVLINGRLRPGVGRICMDQFVVDLGPGPVDVSDGDEAILFGPGTRGE 349

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
               D A   GT NY+++     R  + Y
Sbjct: 350 HTAQDWAEIIGTINYEIVTSPRGRVVRTY 378


>gi|295425675|ref|ZP_06818362.1| alanine racemase [Lactobacillus amylolyticus DSM 11664]
 gi|295064691|gb|EFG55612.1| alanine racemase [Lactobacillus amylolyticus DSM 11664]
          Length = 376

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 148/382 (38%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++++L A+K N  + M  L    +  AVVK N YG G   +A     AG   F V
Sbjct: 6   HRPAVVRVNLGAIKQNIDNEMKHLRPGQKLFAVVKANGYGHGAVPVAKVAEKAGASGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++EG++LR       I VL  + P    I    ++   + ++  L    K L    + 
Sbjct: 66  AILDEGLELRKADIVKPILVLGVVSPEYAPIAAVNDISLTVPNLKWLKQAEKYLKKENLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G S  +     +    K     +  + +H A AD         Q+ 
Sbjct: 126 LKIHLGIDSGMGRIGFSEDDEFIAANKFLEKNDSFFVEGMFAHFASADSSDDSYFKKQVA 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232
           +F+ +            +A+++  +   + H  L R GI +YG     N   P       
Sbjct: 186 KFKHMQDLLTVHPKWIHVANTAASIFDKDIHSDLVRFGIGIYGLNPSSNPDSPDLKADIA 245

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            +  ++  + +  ++    G+ V YG       D++I    +GYADG+     G      
Sbjct: 246 LKPALSFVSELTHVKTIHKGDGVGYGSTFVADHDTIIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                  K  +     PI+G++ MD  M ++ + + +  G  + +   +      +   A
Sbjct: 301 -------KVKVGDQYCPIVGRVCMDQFMVEMPEKMPV--GTKVVLISDNPNDPNNIKAAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++   +  R  + Y
Sbjct: 352 DYVDTIHYEVACLLSDRLPREY 373


>gi|320536161|ref|ZP_08036211.1| alanine racemase [Treponema phagedenis F0421]
 gi|320146997|gb|EFW38563.1| alanine racemase [Treponema phagedenis F0421]
          Length = 379

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 102/383 (26%), Positives = 157/383 (40%), Gaps = 29/383 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              +  I L  L+ N   +   L    +    VK +AYG G  ++A A   AGV    V 
Sbjct: 2   RATKAIIHLDNLQYNIAEIKKRLKPGVKICLPVKADAYGHGAFRVAVAAIRAGVSSLAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSH 122
           S++EG+ LR     A I  L      +   I + N+ P VI S        +        
Sbjct: 62  SIQEGIDLRNAGIVAPIISLSLPILEEIHSIIEYNIHPLVIDSEFIHALNEEAARMKTVQ 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQL 179
              L++DTG NR+G   ++A+            +L  + +H + AD  S         QL
Sbjct: 122 AVHLKIDTGMNRIGCKPEDAITLAAEIVQLPNLKLEGVCTHFSVADSVSPENIAYTKKQL 181

Query: 180 ERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPM 232
             F   +     KGI+      A+S  +L  P   F + RPGI +YG      +    P+
Sbjct: 182 ALFTQTLDALRAKGIDPGIVHAANSGAVLQYPEAQFDMVRPGIIVYGYPPSDCLADKIPL 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+   ++++LI+    G  +SY  +    +D+ IA   IGYADG    LS        
Sbjct: 242 KPVMELVSQVVLIKCTPQGSDISYDRKWHADKDTFIATLPIGYADGLMRALS-------- 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP------DIKLDDV 346
               G K  I     PI+G+I MD  M D+    ++   D   IFGP      +    ++
Sbjct: 294 ---PGLKVRIGDTFYPIVGRICMDQCMVDLGSEPTVTRWDTAVIFGPSENSVKNNSAKEL 350

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +GT  Y++   I  R  + Y
Sbjct: 351 ATIAGTIPYEITCDINKRVPRVY 373


>gi|270292352|ref|ZP_06198563.1| alanine racemase [Streptococcus sp. M143]
 gi|270278331|gb|EFA24177.1| alanine racemase [Streptococcus sp. M143]
          Length = 374

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M + +       AVVK NAYG G   +A A+    V  F V
Sbjct: 13  HRPTKALIYLGAIRQNIQQMGDHIPKGTLKWAVVKANAYGHGAVAVATAIQE-DVDGFCV 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I +L         +  + ++   ++ V  +       +     
Sbjct: 72  SNIDEAIELRQAGLSKKILILGVSEIDAIALAKEYDITLTVAGVEWIQALLDKEADLTGL 131

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +       +   ++  I +H A AD+ S    + QLERF
Sbjct: 132 TVHLKIDSGMGRIGFREAGEAEQAQALLQQHGARVEGIFTHFATADEESDAYFNTQLERF 191

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + +++  K +      ++S+  L      F   R G S+YG       +N  + +   +T
Sbjct: 192 KAILASMKEVPELVHASNSATTLWHAETIFNAVRMGDSMYGLNPSGEVLNLPYDLTPALT 251

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 252 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFT---------- 301

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT 
Sbjct: 302 --VLVDGQACPIVGRVSMDQITIRLPKVYPL--GTKVTLIGSNEDKEITATQVATYRGTI 357

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 358 NYEVVCLLSDRIPREY 373


>gi|149011437|ref|ZP_01832684.1| alanine racemase [Streptococcus pneumoniae SP19-BS75]
 gi|225859452|ref|YP_002740962.1| alanine racemase [Streptococcus pneumoniae 70585]
 gi|303258631|ref|ZP_07344611.1| alanine racemase [Streptococcus pneumoniae SP-BS293]
 gi|303261794|ref|ZP_07347740.1| alanine racemase [Streptococcus pneumoniae SP14-BS292]
 gi|303263658|ref|ZP_07349580.1| alanine racemase [Streptococcus pneumoniae BS397]
 gi|303266834|ref|ZP_07352713.1| alanine racemase [Streptococcus pneumoniae BS457]
 gi|303269891|ref|ZP_07355633.1| alanine racemase [Streptococcus pneumoniae BS458]
 gi|254802388|sp|C1C8T6|ALR_STRP7 RecName: Full=Alanine racemase
 gi|147764427|gb|EDK71358.1| alanine racemase [Streptococcus pneumoniae SP19-BS75]
 gi|225720818|gb|ACO16672.1| alanine racemase [Streptococcus pneumoniae 70585]
 gi|301802398|emb|CBW35152.1| alanine racemase [Streptococcus pneumoniae INV200]
 gi|302636877|gb|EFL67366.1| alanine racemase [Streptococcus pneumoniae SP14-BS292]
 gi|302640132|gb|EFL70587.1| alanine racemase [Streptococcus pneumoniae SP-BS293]
 gi|302640569|gb|EFL70974.1| alanine racemase [Streptococcus pneumoniae BS458]
 gi|302643602|gb|EFL73870.1| alanine racemase [Streptococcus pneumoniae BS457]
 gi|302646696|gb|EFL76921.1| alanine racemase [Streptococcus pneumoniae BS397]
          Length = 367

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   K    +  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREVSEVEQAQDLLQKHGVCVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|315281568|ref|ZP_07870169.1| alanine racemase [Listeria marthii FSL S4-120]
 gi|313614777|gb|EFR88320.1| alanine racemase [Listeria marthii FSL S4-120]
          Length = 368

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 100/379 (26%), Positives = 151/379 (39%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +    L  N    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQKQLPENVALWAVVKANAYGHGIIEVAKTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    Q   I VL         +     +   +     L            
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRQEDANLAAKNRISLTVFREDWLDNL----GLEAP 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ S +EA          K  QL  I +H A AD   +     QL 
Sbjct: 122 LQIHLKVDSGMGRLGIRSAEEARHIESTIAENKQLQLEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F T+++  K   I    A+S+  LL    +F   R GIS+YG T            ++ 
Sbjct: 182 KFTTILTSLKERPIFVHTANSAASLLQSQMNFDAIRFGISMYGLTPSKEIKTSLPFELRP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++L+++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVLVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G   PI+G++ MD T+  +      + G  + I G D    I  DD A   
Sbjct: 294 ----HVLVDGEHAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAAEYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 348 DTINYEVTCLLTERIPRKY 366


>gi|238788483|ref|ZP_04632276.1| Alanine racemase, catabolic [Yersinia frederiksenii ATCC 33641]
 gi|238723396|gb|EEQ15043.1| Alanine racemase, catabolic [Yersinia frederiksenii ATCC 33641]
          Length = 357

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 97/367 (26%), Positives = 160/367 (43%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   ++L+AL++N  ++   +G+A+  +VVK NAYG G  +I   L  A    F +  
Sbjct: 3   RPISATLNLSALRHNLSTVRHHAGSAKIWSVVKANAYGHGLARIWQGL--AATDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    Q  I +L G    Q+ ++ D   L   + S  QL    K         
Sbjct: 61  LNEAIMLREQGWQGPILLLEGFFQPQDLVLLDYYRLTTTVHSDWQLEAI-KAARLSAPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG  + +A      + +        ++SH A AD+        Q    +
Sbjct: 120 IYLKLNSGMNRLGFPVGQAEAIWQWAKSLSHVGEVTLMSHFANADNDIGVET--QFSLIQ 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
              +         A+S+ IL  P  H+   RPGI LYG     +        +Q V++  
Sbjct: 178 QATAQIPAARC-FANSAAILRHPETHYDWVRPGIILYGAAPSGDSADIAEMGLQPVMSLN 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++    G  V YG +   +    I V A GYADGYP                G  
Sbjct: 237 SEIIALQSLSTGHSVGYGSRYTASAAQRIGVVACGYADGYPRLA-----------PSGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G I+MDM   D+T     ++G  ++++G +  +DDVA A+GT  Y+L+ 
Sbjct: 286 IRVDGILTQTVGSISMDMLTVDLTPCPQAQIGSKVEVWGENQPIDDVAKAAGTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 ALANRVP 352


>gi|313889680|ref|ZP_07823323.1| alanine racemase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121977|gb|EFR45073.1| alanine racemase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 368

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 166/378 (43%), Gaps = 28/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +      +DL A++NN  ++   +    +T AVVK +AYG G  +++ A+    V  + V
Sbjct: 6   HRPTVATVDLEAIRNNIKAVQGHIPKGTKTYAVVKADAYGHGAVEVSKAIDKE-VDAYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121
           ++++E ++LR       I VL  +      +  +  +   ++S   L      +     +
Sbjct: 65  SNLDEALELRQAGISKEILVLGVVLADALLLAIENQITVTVASQEWLDDAQAFLGEDLTN 124

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               ++VD+G  R+G+ SL EA          K+  +  I +H A AD+  +     QL 
Sbjct: 125 LHVHVKVDSGMGRIGVRSLAEANQLIAGLRQAKVA-VDGIFTHFATADEADTTKFQSQLN 183

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTV 235
            F  L+S    K      ++S+  L   +  F   R GI++YG       +   +P++  
Sbjct: 184 FFTDLVSRLTDKPDLVHASNSATSLWHSDTIFNAVRLGIAIYGLNPSGSDLKLPYPLKPS 243

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  +R++ +++  AG+ V YG     T D  I    IGYADG+   L G          
Sbjct: 244 LSLRSRLVHVKEIQAGDTVGYGATYTATEDECIGTIPIGYADGWTRDLQGF--------- 294

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
              +  I G    I+G+++MD     +  +   E+G  + + G     +I   DVA   G
Sbjct: 295 ---EVLIDGQFCQIIGRVSMDQMTVRLPKTY--EIGKLVTLIGTSGDQEITATDVAEKKG 349

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++L  +  R  + Y
Sbjct: 350 TINYEVLCLLSDRIPRKY 367


>gi|198244745|ref|YP_002215339.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197939261|gb|ACH76594.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326623083|gb|EGE29428.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 356

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRVMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++ S  L++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   +GE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLNSGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|227544692|ref|ZP_03974741.1| alanine racemase [Lactobacillus reuteri CF48-3A]
 gi|300909066|ref|ZP_07126529.1| alanine racemase [Lactobacillus reuteri SD2112]
 gi|227185338|gb|EEI65409.1| alanine racemase [Lactobacillus reuteri CF48-3A]
 gi|300894473|gb|EFK87831.1| alanine racemase [Lactobacillus reuteri SD2112]
          Length = 375

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 155/383 (40%), Gaps = 31/383 (8%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N  LR   L +DL AL++N       L  N+R  AVVK NAYG G   +A     +G   
Sbjct: 3   NGRLRDTSLIVDLDALRHNIQEQRKVLPENSRILAVVKANAYGNGLIPVAQTAMTSGASG 62

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLM 116
             V  ++E ++L     +A   VL         I     +   + S   + Q    +++ 
Sbjct: 63  LCVAILDEALELWDNGIEAMTLVLGITPVEDALIAAQAGVSLTVGSLDWLEQYHQLAQVA 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                    L +D+G  R+G +            +    +   + +H A AD P  +  +
Sbjct: 123 KPKKPLKVHLGIDSGMGRIGFTEVATFKQAVKLLDSPEFEFEGMFTHFATADSPDENYFN 182

Query: 177 VQLERFRTLISHYKGIEA--SLASSSGILLGP-NYHFQLTRPGISLYGGTDK---INKSH 230
            Q++R+   ++    +     +A+S+  L           R GIS+YG       +  + 
Sbjct: 183 QQVQRWHQFVASLDELPPYVHMANSATGLWHREKITANTVRMGISMYGQNPSGRDLKLTL 242

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q V +  + I  +++  AG  VSYG      +D  +A   IGYADGYP  ++G     
Sbjct: 243 DLQPVSSLVSSISFVKQLKAGRSVSYGATYTAEQDEWLATLPIGYADGYPRCMTGY---- 298

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                   K  + G    I G++ MD  M  +     +  G  + + G     +I   D+
Sbjct: 299 --------KVLVDGQFCDIAGRVCMDQMMIQLPKYYPV--GTPVVLMGKSGDQEITATDL 348

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +GT NY++L  I  R  + Y
Sbjct: 349 AEQAGTINYEILTNISNRVHRIY 371


>gi|254501958|ref|ZP_05114109.1| alanine racemase [Labrenzia alexandrii DFL-11]
 gi|222438029|gb|EEE44708.1| alanine racemase [Labrenzia alexandrii DFL-11]
          Length = 380

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 137/366 (37%), Positives = 198/366 (54%), Gaps = 10/366 (2%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL +DL A+  NW  +   L+  +  AA +K NAYG G  + A  L+  G + FFV    
Sbjct: 17  RLTVDLDAIAANWSLLRSRLAPGSECAATIKANAYGTGQAETAKRLFEEGCRTFFVAVPT 76

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           E + LR   P A I+ L G+ P    ++   ++ PV+ S+ +L  ++ L  +   S P A
Sbjct: 77  EAMALRQTLPSATIYALDGLFPDTADLLLQHDVRPVLGSLDELKEWAALCRTARKSFPAA 136

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + VDTG +RLGLS  E      +       + SL +SHLAC  DP   +N  QL RF  L
Sbjct: 137 VHVDTGIHRLGLSGDEFGTALADLELMGPFKPSLFMSHLACGSDPDHPMNQEQLARFTEL 196

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            S +KG+  SLA+S+G+L+GP+YHF L RPGISLYGG    +  +PMQ V   EARI+++
Sbjct: 197 TSPFKGVPRSLANSAGVLMGPDYHFDLVRPGISLYGGRAFDHGDNPMQPVAKVEARIMIV 256

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ + YG  +   R    AV A GYADG     S  D         GG G I G+
Sbjct: 257 RNVPKGDAIGYGATQTAKRALRNAVVAAGYADGLLRRASSSDDR------PGGFGMIGGH 310

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              ILG+I+MDM   D+TD     ++ G  +++ GP++   D+A  + T +Y+ L  +G 
Sbjct: 311 KASILGRISMDMITLDVTDIPEHLVQRGGLVEMLGPNVAAADMAAYAETIDYEYLTSLGR 370

Query: 364 RYAKFY 369
           R+ + Y
Sbjct: 371 RFERIY 376


>gi|257877141|ref|ZP_05656794.1| alanine racemase [Enterococcus casseliflavus EC20]
 gi|257811307|gb|EEV40127.1| alanine racemase [Enterococcus casseliflavus EC20]
          Length = 373

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 151/380 (39%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  ID TA+  N  H +  L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTKAIIDTTAITENIKHEIAHLPSETFLFAVVKANGYGHGAVQTALAAKEGGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS---CG 119
            +++E ++LR       I +L  ++     ++   +L   ++S+  L      +      
Sbjct: 66  ATIDEAIELREAGITDPILILGVVNVCDIALLTTYDLSFPVASMDWLIEAGAYLEENPLN 125

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 ++VDTG  R+G  +++E         +    +   I +H + AD   +     Q
Sbjct: 126 KPLKVHIKVDTGMGRIGFLTVEEVRQAVLWLEDHPSFEWEGIFTHFSTADQADTSYWETQ 185

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            +RF+ +++    +       +S+  L        + R GI++YG       +++   ++
Sbjct: 186 HQRFKEVLTVLPYLPTYIHTGNSATSLWHKEAVGNMVRFGIAMYGLNPSGHALSEPFSLK 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++  + +I ++    G  + YG      R   I    IGYADG+   + G        
Sbjct: 246 PALSLVSELIQVKLLEKGAGIGYGETYITPRQEWIGTVPIGYADGWLRKMQGFSI----- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALA 349
                   ++G    I+G++ MD  M  +  + ++  G  + +     G  I + DVA  
Sbjct: 301 -------LVEGERCEIVGRVCMDQLMIRLPRAFAV--GTPVTLIGENHGEQITMQDVADQ 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++   +  R  + Y
Sbjct: 352 LETIHYEVACTLSARVPREY 371


>gi|148255205|ref|YP_001239790.1| putative alanine racemase (alr) [Bradyrhizobium sp. BTAi1]
 gi|146407378|gb|ABQ35884.1| putative alanine racemase (alr) [Bradyrhizobium sp. BTAi1]
          Length = 394

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 181/365 (49%), Gaps = 11/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  A  A V+K +AYG G  ++A  L  AG + FFV ++ E 
Sbjct: 28  LTIDLDALAANWRKLEKTAVPAECAGVIKADAYGCGIPQVARTLAAAGCKTFFVATLSEA 87

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
              R   P  A ++VL G      +     N  PVI  + +L  +       G     A+
Sbjct: 88  KVARTALPDSAALYVLDGFFQNTGEDYAAINCRPVIGDLNELAEWDMFCRRTGWKGGAAI 147

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTG NRLG +  +A        +   G ++LI+SHLA A+  +S  N+ QL  FR + 
Sbjct: 148 HVDTGMNRLGFTPTDAQGMIPRIQSGDHG-ITLIMSHLASAEQLNSPSNARQLSLFREVA 206

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           S + G+ A+LA+SSGI LG  + F + RPG +LYG        +PMQ V   +ARI+ +R
Sbjct: 207 SVFTGVPAALAASSGIFLGAAFQFDMVRPGAALYGINPTPEADNPMQPVAEIKARIVQLR 266

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G+ V YGG     R + IA+ + GYADGY    S  D         G    I G  
Sbjct: 267 DLARGDTVGYGGTWTARRPTKIAILSAGYADGYFRAASSNDGTR------GADVVIAGQR 320

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            P+ G+++MD+   D+TD        G +  + G  I +D++A   GT  Y+++  +G R
Sbjct: 321 CPVAGRVSMDLIAVDVTDLPPKAARRGHFATLLGEGITVDELAHHFGTIGYEVMTNLGRR 380

Query: 365 YAKFY 369
           Y + Y
Sbjct: 381 YHRIY 385


>gi|170702444|ref|ZP_02893329.1| alanine racemase [Burkholderia ambifaria IOP40-10]
 gi|170132647|gb|EDT01090.1| alanine racemase [Burkholderia ambifaria IOP40-10]
          Length = 356

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++   VVK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYAPEKYRAAWERARACPGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
               +  G   SLA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAENIAGA-RSLANSAAVLWHPDTHFDWVRPGIILYGASPSGLSADIADTGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAGRVP 352


>gi|5805088|emb|CAB53547.1| alanine racemase [Rhizobium leguminosarum bv. viciae]
          Length = 354

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 187/363 (51%), Gaps = 15/363 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E V+
Sbjct: 2   IDLAALGRNYRKLVSMLAPVRAGAVVKADAYGLGAERVARTLYSEGCRHFFVAQFVEAVR 61

Query: 71  LR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYALQV 128
           LR      A+IFVL G+ PG E    +  ++PV++S+ Q   +S          P  LQ 
Sbjct: 62  LRPALAHDAQIFVLNGLQPGNEIACAEMGIVPVLNSLAQWRQWSAAARILKRCLPAVLQF 121

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG +RLG   +E  +      +    ++  I+SHLA ADD  S  N  Q      +   
Sbjct: 122 DTGMSRLGFPREERRELAAALRDGSNVEILFIMSHLASADDMGSEQNGEQFAEMSRIADE 181

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
           + G + S A+S G+ LG  Y+  L RPGI+LYGG     + +PM+ VV+    ++  R  
Sbjct: 182 FPGFDISFANSGGVFLGEAYYGVLARPGIALYGGAPNAGEKNPMEPVVSLNVAVVQTRTV 241

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            AG  V YGG     R++ +A  A GYADG P  LS             G  + KG  +P
Sbjct: 242 PAGAKVGYGGAHVTQRETRLATIAAGYADGLPRCLSDR-----------GAVYFKGVRLP 290

Query: 309 ILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           I+G+++MD T  DIT      +  G  +++ G    L+D+A  +GT +Y++L  +G RY 
Sbjct: 291 IVGRVSMDSTTVDITALPEGALTFGSLVEVLGRHQTLEDIARDAGTISYEILTGLGDRYD 350

Query: 367 KFY 369
           + Y
Sbjct: 351 RQY 353


>gi|228477128|ref|ZP_04061766.1| alanine racemase [Streptococcus salivarius SK126]
 gi|228251147|gb|EEK10318.1| alanine racemase [Streptococcus salivarius SK126]
          Length = 367

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 157/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     K+DL+A+  N   + +      +T AVVK NAYG G  ++A  L    V  F V
Sbjct: 6   HRPTLAKVDLSAISENIEQVVSHIPKKVQTFAVVKANAYGHGAVEVAKHLSKQ-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  + P +  +    N+   ++S+  L             
Sbjct: 65  SNLDEALELRQAGLEQPILILGVVLPDEVPLAIQENITLTVASLEWLEMAKDQGLDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++D+G  R+G+  Q   D            +  I +H A AD+        QL  F
Sbjct: 125 TCHIKIDSGMGRIGVRSQGDADSLIAGLKALGADVEGIFTHFATADEADDSKFKRQLAFF 184

Query: 183 RTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             L+++   +      ++S+  +      F   R G+ +YG       ++  + ++  + 
Sbjct: 185 TDLVNNLVDRPRLVHASNSATSIWHAETVFNAVRLGVVIYGLNPSGSVLDLPYNIRPALR 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E  ++ ++   +G+ V YG     T D +I    IGYADG+   L G            
Sbjct: 245 LETALVHVKTLPSGQDVGYGATYTTTADEVIGTIPIGYADGWTRDLQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G + PI+G+++MD     +     +  G  + + G +    I   +VA   GT 
Sbjct: 294 -HVIVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAEKRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRVPRSY 366


>gi|200389510|ref|ZP_03216121.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199601955|gb|EDZ00501.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 356

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAHSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|148989349|ref|ZP_01820717.1| alanine racemase [Streptococcus pneumoniae SP6-BS73]
 gi|168493602|ref|ZP_02717745.1| alanine racemase [Streptococcus pneumoniae CDC3059-06]
 gi|194398697|ref|YP_002038309.1| alanine racemase [Streptococcus pneumoniae G54]
 gi|226711062|sp|B5E745|ALR_STRP4 RecName: Full=Alanine racemase
 gi|147925099|gb|EDK76179.1| alanine racemase [Streptococcus pneumoniae SP6-BS73]
 gi|183576433|gb|EDT96961.1| alanine racemase [Streptococcus pneumoniae CDC3059-06]
 gi|194358364|gb|ACF56812.1| alanine racemase [Streptococcus pneumoniae G54]
 gi|332199723|gb|EGJ13798.1| alanine racemase [Streptococcus pneumoniae GA41317]
          Length = 367

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|294788699|ref|ZP_06753940.1| alanine racemase [Simonsiella muelleri ATCC 29453]
 gi|294483181|gb|EFG30867.1| alanine racemase [Simonsiella muelleri ATCC 29453]
          Length = 352

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 97/366 (26%), Positives = 160/366 (43%), Gaps = 18/366 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L+ N+  +  + G  +  AV+K NAYG G  + A AL++     F V  
Sbjct: 2   RPLFCEIRLNYLRENYQILKKIHGK-KLLAVIKANAYGHGAVQCAQALHDI-ADGFAVAF 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR +     I +L G    +E  ++   +L  VI    QL  +           
Sbjct: 60  LEEAIELREHGITRPIVLLEGTFDAKEYDLVEQYDLWTVIHQQSQLELFLAH-DWRKPTT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +                 + ++H +CAD+    +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHQFAAAYTALSQSDKIANIVKMTHFSCADEAERSMTDMQIESFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                  G E S+A+S+ ++  P       R G++LYG       S  ++ V+   +RI 
Sbjct: 179 LGCHGLTG-EESIANSAAMIRFPEARRDWGRAGLALYGVDPTGEFSGSLKPVMRLSSRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R     E + YG      R + + + A GYADGYP                     +K
Sbjct: 238 AERILQPHEPIGYGANFYTKRSTRVGLVACGYADGYPRNAPNE-----------TPILVK 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    I+G+I+MDM   D+ DS    VGD +++FG  I + ++A A+G   Y++L  I  
Sbjct: 287 GLRTKIIGRISMDMLTVDLNDSHE-GVGDEVELFGDLINVQEIADAAGMIPYEILCNI-K 344

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 345 RAKRVY 350


>gi|116249082|ref|YP_764923.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841]
 gi|109940037|sp|Q9RAE7|ALR2_RHIL3 RecName: Full=Alanine racemase, catabolic
 gi|115253732|emb|CAK12125.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 377

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 187/363 (51%), Gaps = 15/363 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E V+
Sbjct: 25  IDLAALGRNYRKLVSMLAPVRAGAVVKADAYGLGAERVARTLYSEGCRHFFVAQFVEAVR 84

Query: 71  LR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYALQV 128
           LR      A+IFVL G+ PG E    +  ++PV++S+ Q   +S          P  LQ 
Sbjct: 85  LRPALAHDAQIFVLNGLQPGNEIACAEMGIVPVLNSLAQWRQWSAAARILKRCLPAVLQF 144

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG +RLG   +E  +      +    ++  I+SHLA ADD  S  N  Q      +   
Sbjct: 145 DTGMSRLGFPREERRELAAALRDGSNVEILFIMSHLASADDMGSEQNGEQFAEMSRIADE 204

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
           + G + S A+S G+ LG  Y+  L RPGI+LYGG     + +PM+ VV+    ++  R  
Sbjct: 205 FPGFDISFANSGGVFLGEAYYGVLARPGIALYGGAPNAGEKNPMEPVVSLNVAVVQTRTV 264

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            AG  V YGG     R++ +A  A GYADG P  LS             G  + KG  +P
Sbjct: 265 PAGAKVGYGGAHVTQRETRLATIAAGYADGLPRCLSDR-----------GAVYFKGVRLP 313

Query: 309 ILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           I+G+++MD T  DIT      +  G  +++ G    L+D+A  +GT +Y++L  +G RY 
Sbjct: 314 IVGRVSMDSTTVDITALPEGALTFGSLVEVLGRHQTLEDIARDAGTISYEILTGLGDRYD 373

Query: 367 KFY 369
           + Y
Sbjct: 374 RQY 376


>gi|189218087|ref|YP_001938729.1| Alanine racemase [Methylacidiphilum infernorum V4]
 gi|259710070|sp|B3DWZ0|ALR_METI4 RecName: Full=Alanine racemase
 gi|189184945|gb|ACD82130.1| Alanine racemase [Methylacidiphilum infernorum V4]
          Length = 387

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 170/373 (45%), Gaps = 18/373 (4%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++    ++ID  AL+ N            +  AVVK  AYG G   IA  L ++GV+   
Sbjct: 13  AHPRSWVEIDGRALRFNIRVARERIPKKTKIIAVVKSEAYGHGLIPIAKELVHSGVEVLG 72

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120
           + +++E ++LR    ++ + +L  I P +  II   N+  VISS  +  + S+     G 
Sbjct: 73  INNIDEAIELRQAGIRSALLILCPILPSEASIIVSYNVGVVISSYNEAKWLSQAAERQGK 132

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                +++DTG  RLG    + +             ++ I +H + A +        Q  
Sbjct: 133 KAIVHIKIDTGMGRLGFIPSQFIQEMEKIKRLSSLSIAAICTHFSQA-ETDIEATEKQWL 191

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
                  ++KG+   +A+S+ +     Y     R G++LYG          ++ ++T + 
Sbjct: 192 ELLKFRHYFKGLPIHVANSAALWRKSVYACDYVRIGLALYGIAPMPFLRRFLKPILTWKC 251

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I+LI++   G  +SYG   KL + S IAV ++GY DGY  +LS                
Sbjct: 252 KIVLIKELPRGHPISYGATYKLKKPSRIAVLSVGYGDGYCRSLSN-----------KASV 300

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356
            IKG   P+ G ITM++ M DITD  S +VGD   + G      I  D++A  S T +Y+
Sbjct: 301 LIKGKRCPVRGAITMNLLMVDITDLPSCKVGDEAVLLGTQGKESITADELAKLSQTISYE 360

Query: 357 LLVRIGTRYAKFY 369
           ++  I +   + Y
Sbjct: 361 IITNIHSHIRRNY 373


>gi|326790617|ref|YP_004308438.1| alanine racemase [Clostridium lentocellum DSM 5427]
 gi|326541381|gb|ADZ83240.1| alanine racemase [Clostridium lentocellum DSM 5427]
          Length = 379

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 111/384 (28%), Positives = 182/384 (47%), Gaps = 33/384 (8%)

Query: 5   EFLRL--KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           E LR   +I+L+ L++N   +   L    +  AVVK +AYG G  +++  L   G++ F 
Sbjct: 9   ELLRAYSEINLSNLEHNLGQLQEQLPAMCKVIAVVKADAYGHGAVQVSRHLQRLGIEHFA 68

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V S++E ++LR+   +  I VL     G+ + +   ++   +      ++  K+      
Sbjct: 69  VASIDEAIELRINQIEGEILVLGYTPIGRREDLIYYHITQALIDE---SYAEKISKGKGR 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQ 178
               +++DTG NRLGL     LD     + K+  +++   SHL+ A    D        Q
Sbjct: 126 LRVHIKLDTGMNRLGLRATN-LDALMAIYRKENLEITGTFSHLSRADSLCDEDKSFTEYQ 184

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230
           ++ F  +I   K          L SS GI+  P     L RPGI LYG +    ++    
Sbjct: 185 IKTFYEIIGSLKKNHIEVGKTHLQSSYGIINYPQIKCDLARPGILLYGVSSNPEENIAER 244

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++  A++  I+    GE V YG   K+ ++S+IA+  IGYADGYP  LS     
Sbjct: 245 LDVRPVLSLRAKVGSIKHVDKGETVGYGNHFKVEKESVIAIVTIGYADGYPRYLSKR--- 301

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                  G K  I+G  VPI+G + MD  + D+T    I+VG  + + G D    + ++ 
Sbjct: 302 -------GCKVLIRGREVPIIGNVCMDQMIVDVTSLNDIKVGSQVTLIGKDEEAYLSVNQ 354

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           ++L + T N + L  IG R  K Y
Sbjct: 355 ISLLTNTINNETLTGIGQRVKKVY 378


>gi|168491420|ref|ZP_02715563.1| alanine racemase [Streptococcus pneumoniae CDC0288-04]
 gi|183574262|gb|EDT94790.1| alanine racemase [Streptococcus pneumoniae CDC0288-04]
          Length = 367

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHDVRVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|71904184|ref|YP_280987.1| alanine racemase [Streptococcus pyogenes MGAS6180]
 gi|123639333|sp|Q48RM8|ALR_STRPM RecName: Full=Alanine racemase
 gi|71803279|gb|AAX72632.1| alanine racemase [Streptococcus pyogenes MGAS6180]
          Length = 366

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S+        +T AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + ++     +   I+S+  +             
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+GL   +A++   +S  +    +  I +H A AD+      + QL+ F
Sbjct: 125 KVHVKVDSGMGRIGLRSSKAVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + LI+  +        ++S+  +   +  F   R GI  YG       ++   P+Q  ++
Sbjct: 185 KKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPLQEALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG+ V YG      +   +    IGYADG+   + G            
Sbjct: 245 LESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    I+G+++MD     +  +  +  G  + + G     +I   D+A    T 
Sbjct: 295 --VLVDGQFCEIIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIPRIY 366


>gi|257431477|ref|ZP_05607850.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus 68-397]
 gi|257277718|gb|EEV08388.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus 68-397]
          Length = 382

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 166/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGITAKILVLGVLPAKDSDKAIQHRVALTVPSKQWLKEAIKNISGE 121

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 122 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 177

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q  RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 178 MTTEQYHRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 238 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 297 -----------VNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
             A    T NY++L  +  R  + Y
Sbjct: 344 VAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|107028781|ref|YP_625876.1| alanine racemase [Burkholderia cenocepacia AU 1054]
 gi|116690060|ref|YP_835683.1| alanine racemase [Burkholderia cenocepacia HI2424]
 gi|105897945|gb|ABF80903.1| alanine racemase [Burkholderia cenocepacia AU 1054]
 gi|116648149|gb|ABK08790.1| alanine racemase [Burkholderia cenocepacia HI2424]
          Length = 356

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 153/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++  AVVK NAYG G  +  P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG   ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYVPEKYRAAWERARACPGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G   SLA+S+ +L  P+ HF   RPGI LYG +            +++ +T  
Sbjct: 178 RGAESIAGA-RSLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKSAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAARVP 352


>gi|325568405|ref|ZP_08144772.1| alanine racemase [Enterococcus casseliflavus ATCC 12755]
 gi|325158174|gb|EGC70327.1| alanine racemase [Enterococcus casseliflavus ATCC 12755]
          Length = 386

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 150/380 (39%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ ID TA+  N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 19  HRPTKVIIDTTAITENIKNEIAHLPSETFLFAVVKANGYGHGAVQTAQAAKEGGAAGFCV 78

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---YSKLMSCG 119
            +++E ++LR       + +L  ++     ++ + +    ++S+  L     Y +     
Sbjct: 79  ATIDEAIELREAGITDPLLILGVVNVQDIPLLAEYDFSFPVASMDWLVEAGTYLEENPIK 138

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 ++VDTG  R+G  + +E L                I +H + AD   +     Q
Sbjct: 139 TPLKVHVKVDTGMGRIGFLTPEEVLQAVLWLETHPTFDWEGIFTHFSTADQADTTYWETQ 198

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            +RF+ +++    +       +S+  L        + R GI++YG       + +   ++
Sbjct: 199 HQRFKEVLTVLPYLPTYIHTGNSATSLWHKEAVGNMVRFGIAMYGLNPSGHALKEPFSLK 258

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++  + +I ++    G  + YG          I    IGYADG+   + G        
Sbjct: 259 PALSLVSELIQVKLLEKGAGIGYGETYITPHQEWIGTVPIGYADGWLRKMQGFSL----- 313

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   ++G    I+G++ MD  M  +  + ++  G  + + G +    I + DVA  
Sbjct: 314 -------LVEGEPCEIVGRVCMDQLMIRLPRAFAV--GTTVTLIGENHGKRITMQDVADQ 364

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++   +  R  + Y
Sbjct: 365 LETIHYEVACTLSARVPREY 384


>gi|212710753|ref|ZP_03318881.1| hypothetical protein PROVALCAL_01821 [Providencia alcalifaciens DSM
           30120]
 gi|212686450|gb|EEB45978.1| hypothetical protein PROVALCAL_01821 [Providencia alcalifaciens DSM
           30120]
          Length = 354

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 161/367 (43%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +R  I    L++N   +    G A+  +V+K + YG G ++I   L  +    F V  
Sbjct: 3   RPIRAIIHPHNLEHNLAVIRQKIGQAKIWSVMKADGYGHGIKRIWRGLKAS--DGFAVLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E V LR    Q  I +L G     + ++ D   L   + S  QL    +  +      
Sbjct: 61  LHEAVLLREEGWQGPILLLEGFFQAADLVVIDQYQLTTSVHSRWQLAAIEQA-TLSQPIS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++++G NRLG S+ E  D      +        ++SH A +D P      V LE+ +
Sbjct: 120 VYIKLNSGMNRLGFSVSEYSDIVDQLTHMANVANVTLMSHFANSDLPGG--TQVPLEKIQ 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
              S    +   +A+S  +L   N H+   R GI LYG +          + ++  +T +
Sbjct: 178 HFSSL--SLPTCIANSGAVLWHQNTHYDWVRAGIVLYGASPSGKWADIAEYHLKAAMTLQ 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II I    AG+ + YG +    +   IA  A GYADGYP                G  
Sbjct: 236 SEIIAIHHIEAGQSIGYGSKFTSEKPMRIATVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            + +G    +LG ++MDM   DI+D   + +G  ++++G ++ +DDVA  +GT  Y+LL 
Sbjct: 285 VWCQGRRCELLGAVSMDMLTIDISDCPEVTIGTPVELWGENLPVDDVAQFAGTIGYELLC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|15901532|ref|NP_346136.1| alanine racemase [Streptococcus pneumoniae TIGR4]
 gi|111657514|ref|ZP_01408257.1| hypothetical protein SpneT_02001280 [Streptococcus pneumoniae
           TIGR4]
 gi|116515765|ref|YP_816964.1| alanine racemase [Streptococcus pneumoniae D39]
 gi|221232432|ref|YP_002511585.1| alanine racemase [Streptococcus pneumoniae ATCC 700669]
 gi|225855126|ref|YP_002736638.1| alanine racemase [Streptococcus pneumoniae JJA]
 gi|225857311|ref|YP_002738822.1| alanine racemase [Streptococcus pneumoniae P1031]
 gi|298229862|ref|ZP_06963543.1| alanine racemase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255738|ref|ZP_06979324.1| alanine racemase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503442|ref|YP_003725382.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A]
 gi|303254308|ref|ZP_07340416.1| alanine racemase [Streptococcus pneumoniae BS455]
 gi|61218406|sp|P0A2W8|ALR_STRPN RecName: Full=Alanine racemase
 gi|61218407|sp|P0A2W9|ALR_STRR6 RecName: Full=Alanine racemase
 gi|122278190|sp|Q04J74|ALR_STRP2 RecName: Full=Alanine racemase
 gi|254802389|sp|B8ZMG1|ALR_STRPJ RecName: Full=Alanine racemase
 gi|254802391|sp|C1CFR7|ALR_STRZJ RecName: Full=Alanine racemase
 gi|254802392|sp|C1CM34|ALR_STRZP RecName: Full=Alanine racemase
 gi|5759209|gb|AAD51027.1|AF171873_1 alanine racemase [Streptococcus pneumoniae]
 gi|14973192|gb|AAK75776.1| alanine racemase [Streptococcus pneumoniae TIGR4]
 gi|116076341|gb|ABJ54061.1| alanine racemase [Streptococcus pneumoniae D39]
 gi|220674893|emb|CAR69468.1| alanine racemase [Streptococcus pneumoniae ATCC 700669]
 gi|225723137|gb|ACO18990.1| alanine racemase [Streptococcus pneumoniae JJA]
 gi|225725718|gb|ACO21570.1| alanine racemase [Streptococcus pneumoniae P1031]
 gi|298239037|gb|ADI70168.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A]
 gi|302598659|gb|EFL65697.1| alanine racemase [Streptococcus pneumoniae BS455]
          Length = 367

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|187736490|ref|YP_001878602.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426542|gb|ACD05821.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835]
          Length = 368

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 164/374 (43%), Gaps = 17/374 (4%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S      +IDL A+++N + +   +       VVK  AYG G E++   L + G+  F V
Sbjct: 5   SPPRAWAEIDLGAIRHNLNVVKQAAKGEYYMPVVKAGAYGHGLEQVCRTLDSEGIAFFGV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            +V E  ++     + R ++L    P + + I        IS++ +   Y+ L    G +
Sbjct: 65  ANVGEARRISQAGCRTRPYILGPAFPEEREEIVLNGWRSFISTMEEAAHYNSLARLYGKT 124

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P  L VDTG  R G    +  +            L  + +HL CAD+    +   Q+ R
Sbjct: 125 LPIHLSVDTGMGRGGFLPDQLEELLSRLGELDSLHLEGLGAHLPCADE-DREITLRQISR 183

Query: 182 FRTLISHYKGIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVV 236
           F  + +  +         LA+S+  L        + RPG+ LYG +   +      +  +
Sbjct: 184 FEQMAARIREKLPLKYCHLANSAASLDYEIPSNNMCRPGLVLYGFSPIPSPWAAQLKPAM 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              +R+ ++R    G  +SYGG       + +A   IGYADGY  +L             
Sbjct: 244 ALFSRLTVVRTLPEGHGISYGGTFVTDHPTRVATVGIGYADGYLRSL----------AHK 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G +  + G   P+LG++TMD  M D++ +   E G   +I GP I + ++A  +GT +++
Sbjct: 294 GARVMVDGVSCPLLGRVTMDQIMVDVSRAPHAEPGMTAEIMGPHIPVTELAEKAGTISWE 353

Query: 357 LLVRIGTRYAKFYT 370
           +   IG R  + YT
Sbjct: 354 IFTGIGPRVPRHYT 367


>gi|327193285|gb|EGE60191.1| alanine racemase protein [Rhizobium etli CNPAF512]
          Length = 377

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 195/366 (53%), Gaps = 15/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E 
Sbjct: 23  LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V+LR      A+IFVL G+ PG E    ++ +IPV++S+ Q   +S        S P  L
Sbjct: 83  VRLRPALAEDAQIFVLNGLQPGNEVACAESGIIPVLNSLAQWRQWSATARLLTRSLPAVL 142

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLG   +E  +      +    ++  I+SHLACAD+  S  N  QL     + 
Sbjct: 143 QFDTGMSRLGFPWEERAELAAVIGDGANVEILFIMSHLACADELDSGQNGDQLAEMARIA 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             + G + S A+S G+ LG  YH  L RPGI+LYGG      ++PM+ VV  +  ++  R
Sbjct: 203 DEFPGFDISFANSGGLFLGDAYHGVLARPGIALYGGAPNAGGTNPMEPVVRLDVAVVQTR 262

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              +G  + YGG     R++ +A  A GYADG P +L              G  + KG  
Sbjct: 263 TVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDC-----------GAVYHKGIR 311

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+++MD    DIT      + +G  +++ GP+  L+DVA A+GT +Y++L  +G R
Sbjct: 312 LPIVGRVSMDSATVDITALPEGALRLGSLVEVLGPNQTLEDVAGAAGTISYEILTGLGDR 371

Query: 365 YAKFYT 370
           Y + Y 
Sbjct: 372 YDRQYC 377


>gi|190894994|ref|YP_001985287.1| alanine racemase [Rhizobium etli CIAT 652]
 gi|190700655|gb|ACE94737.1| alanine racemase protein [Rhizobium etli CIAT 652]
          Length = 377

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 195/366 (53%), Gaps = 15/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E 
Sbjct: 23  LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V+LR      A+IFVL G+ PG E    ++ +IPV++S+ Q   +S        S P  L
Sbjct: 83  VRLRPALAEDAQIFVLNGLQPGNEVACAESGIIPVLNSLAQWRQWSATARLLTRSLPAVL 142

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLG   +E  +      +    ++  I+SHLACAD+  S  N  QL     + 
Sbjct: 143 QFDTGMSRLGFPWEERAELAAVIGDGANVEILFIMSHLACADELDSGQNGDQLAEMARIA 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             + G + S A+S G+ LG  YH  L RPGI+LYGG      ++PM+ VV  +  ++  R
Sbjct: 203 DEFPGFDISFANSGGVFLGDAYHGVLARPGIALYGGAPNAGGTNPMEPVVRLDVAVVQTR 262

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              +G  + YGG     R++ +A  A GYADG P +L              G  + KG  
Sbjct: 263 TVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDC-----------GAVYHKGIR 311

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+++MD    DIT      + +G  +++ GP+  L+DVA A+GT +Y++L  +G R
Sbjct: 312 LPIVGRVSMDSATVDITALPEGALRLGSLVEVLGPNQTLEDVAGAAGTISYEILTGLGDR 371

Query: 365 YAKFYT 370
           Y + Y 
Sbjct: 372 YDRQYC 377


>gi|238022968|ref|ZP_04603394.1| hypothetical protein GCWU000324_02890 [Kingella oralis ATCC 51147]
 gi|237865776|gb|EEP66914.1| hypothetical protein GCWU000324_02890 [Kingella oralis ATCC 51147]
          Length = 351

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 169/368 (45%), Gaps = 20/368 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L++N+  + AL GN +  AV+K NAYG G  + A AL++A    F V  
Sbjct: 2   RPLTCEIRLDYLRDNYQYLKALHGN-KLLAVMKANAYGHGAVQCARALHDA-ADGFAVAF 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE V+LR       I VL G+    +   + +  L PV+    QL              
Sbjct: 60  LEEAVELREAGITKPIVVLEGVFQAADYAAVAEYRLWPVVHCQAQLEGLLAF-DWREPAT 118

Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L++D+G +R G      A  F     + K+G++   +SH ACAD+    +  +QLE F
Sbjct: 119 VWLKMDSGMHRTGFFPHNYAAAFAALRQSGKVGEIVK-MSHFACADETERGMTQMQLEAF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
               +   G E SLA+S+ I+  P       R G++LYG       S  ++ V+  ++ +
Sbjct: 178 DLACAGLDGAE-SLANSAAIMAYPEARRDWGRAGLALYGVDPFGAFSGSLKPVMRLKSEV 236

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
              R     E + YG      R + +   A GYADGYP   +                 I
Sbjct: 237 FAERVLQPHEPIGYGASFYTKRSTRVGAVAGGYADGYPRRAASD-----------TPVAI 285

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    ++G+I+MDM   D+     + VG  +++FG  I +++VA A+GT  Y++L  + 
Sbjct: 286 DGVRSRLIGRISMDMLTVDL-QQADMGVGSEVELFGDIISVNEVAAAAGTIAYEVLCNV- 343

Query: 363 TRYAKFYT 370
            R  + Y+
Sbjct: 344 KRAKRVYS 351


>gi|86159846|ref|YP_466631.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776357|gb|ABC83194.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 395

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 154/373 (41%), Gaps = 19/373 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL AL +N   + A +  AR  AVVK NAYG G      A   AG     V  
Sbjct: 14  RPVWAEIDLDALAHNVRLLAARASPARLYAVVKANAYGHGAVACGRAALEAGAHGLAVVC 73

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           V+E  +LR     A + V+          +    L P + ++  +   S      G   P
Sbjct: 74  VDEAEELRRAGLDAPLLVIGHTPASDAARVVALGLRPAVGAMDLVEALSAEAGRRGAEVP 133

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NR GL+    +     +      ++  + +H A A++        Q E  R
Sbjct: 134 IHLELESGLNRHGLTPDALVALAERARALPGLRVEGLFTHFAAAEEGDQRFTRAQFEVLR 193

Query: 184 TLISHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEA 240
                   + E   A+S+ ILL      +  R G+SLYG            ++ V++  A
Sbjct: 194 DTSRRLPWVPERHCAASASILLDHEMALEAVRGGLSLYGYRPAPWCGTDADLRPVMSLRA 253

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  + +   G  V YG      R + +A+   GYADGY  +                + 
Sbjct: 254 RVARVSEIDRGATVGYGRTWAANRATRVALVMCGYADGYRRSFGNR-----------TQV 302

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            + G   P++G++ MDM M D+T    +  GD + + G D    +  DD+A  + T +++
Sbjct: 303 LVHGRRAPVVGRVAMDMCMVDVTAVPGVAAGDVVTLIGRDGDERVDADDLATIADTISWE 362

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 363 ILAGISARVPRLY 375


>gi|268611540|ref|ZP_06145267.1| alanine racemase [Ruminococcus flavefaciens FD-1]
          Length = 378

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 160/385 (41%), Gaps = 34/385 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFV 62
           +    ++ L  L+ N   + +L SG+    AVVK +AYG G E I   L  + G++ F V
Sbjct: 6   KRAWAEVSLPQLRKNVEIIRSLNSGSTEIMAVVKADAYGHGDEHIVRCLANDCGIRYFAV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E + +R + PQ  I +L    P     I   N+I  + S         + +     
Sbjct: 66  SNLDEAIAVRKFAPQGEILILGYTPPEYAHEISMYNIIQGVVSTEYAEAL--VQNTPQPI 123

Query: 123 PYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNS 176
              +++DTG  R+GL   + Q+               +  I +H A AD           
Sbjct: 124 RCHIKIDTGMGRIGLKHDTPQQCAAEIAEMMKIDKLSVEGIYTHFAVADSDDPDNVAYTD 183

Query: 177 VQLERFRT------LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            Q E+F T           K       +S+      +    L+R GI LYG    ++   
Sbjct: 184 KQ-EKFITDTYDVLAAQGIKLPHLHFMNSAATCYRNSERSTLSRAGIILYGLHPDVSLDI 242

Query: 231 PM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           P   + ++  +A I  ++    G+ +SYG   +  R+  IA   IGYADGY   LS    
Sbjct: 243 PEGLEPLMELKAVISHVKTVNKGDCISYGRTFRADREMRIATVTIGYADGYSRLLS---- 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G+  + G    I G++ MD  M D++D    + GD + + G +    I  D
Sbjct: 299 -------SKGEILVHGKRCKITGRVCMDQLMIDVSDVPEAKAGDIVTLIGKEGDDRITAD 351

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           D+A   GT  Y+++  I  R  + Y
Sbjct: 352 DLAQIYGTIGYEVVCGISKRVPRIY 376


>gi|62180365|ref|YP_216782.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224583706|ref|YP_002637504.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62127998|gb|AAX65701.1| alanine racemase 2, catabolic [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224468233|gb|ACN46063.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322714840|gb|EFZ06411.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 356

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++    GE V YGG+  +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSVGERVGYGGRYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|194442850|ref|YP_002041058.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194401513|gb|ACF61735.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 356

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 166/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A       +  +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLWAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++    GE V YGG+  +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSVGERVGYGGRYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|260437330|ref|ZP_05791146.1| alanine racemase [Butyrivibrio crossotus DSM 2876]
 gi|292810242|gb|EFF69447.1| alanine racemase [Butyrivibrio crossotus DSM 2876]
          Length = 372

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 167/374 (44%), Gaps = 26/374 (6%)

Query: 11  IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L ++  N        G + +  A+VK NAYG G  ++A A+ +  V  F V +V E +
Sbjct: 11  IHLDSIYKNIEEAKKRVGSDTKIMAIVKANAYGHGAVEVAGAIKDK-VYGFAVATVREAL 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQV 128
            LR       I VL  +   + + +   N+I  + +       S+     G++    +++
Sbjct: 70  TLRESGVDNPILVLGYVCKAEYESVIRNNIIFAMLTKDMAKDISECAARIGITAKCHIKI 129

Query: 129 DTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +TG NR+G  + +EA+D        +      I  H A AD         Q E F  +IS
Sbjct: 130 NTGMNRIGFPVNEEAIDDIAELTGYEGLDCEGIFMHFATADSADKSYAKHQFELFMDVIS 189

Query: 188 HY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEA 240
               +GI+      A+S+ I+  P Y   + R GI LYG   +D+++ S      +  + 
Sbjct: 190 KLEKRGIQFKIRHCANSAAIIDLPEYKLDMVREGIILYGLKPSDEVDASMKYYPALELKT 249

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +++  AGE +SYG      R   IA  AIGYADGYP +LS             G  
Sbjct: 250 HVIFVKELGAGESISYGRTFVTDRPMRIATVAIGYADGYPRSLSN-----------KGYV 298

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            I G    ++G++ MD  M D+TD   + V D + + G D    I  ++V   SG  NY+
Sbjct: 299 LIHGKKAKVVGRVCMDQMMIDVTDIPDVNVEDVVTVVGKDGSEEITFEEVGELSGRFNYE 358

Query: 357 LLVRIGTRYAKFYT 370
            +  I  R  + Y 
Sbjct: 359 FVCDISERVERKYV 372


>gi|301794676|emb|CBW37127.1| alanine racemase [Streptococcus pneumoniae INV104]
          Length = 367

 Score =  365 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       +   + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLALPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ I+   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHIKTVPAGACMGYGATYQTDSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|319785910|ref|YP_004145385.1| alanine racemase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464422|gb|ADV26154.1| alanine racemase [Pseudoxanthomonas suwonensis 11-1]
          Length = 356

 Score =  365 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 166/370 (44%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+    +L G  R  AVVK +AYG G  + A A        F V  
Sbjct: 2   RPARALIDLAALRHNYRLARSLGGG-RALAVVKADAYGHGAVRCA-AALEHEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR    +  I +L G     E  ++ + +L  V+ +  Q+    + +       
Sbjct: 60  IEEALVLRGAGIRKPILLLEGFFEASELPLLLEHDLWTVVHAPWQVEALERTV-LPAPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+G+   +  +           ++++ +SH A AD+        QL+ F 
Sbjct: 119 VWLKLDSGMHRVGIGADDYAEAWRRLEALPHVRMAVKMSHFARADELECARTREQLDTFA 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
              +   G E S+ +S  +L  P       RPG+ LYG +        +  ++ V+T E+
Sbjct: 179 AATAGLPG-EVSVCNSPALLGWPQARGHWARPGLMLYGVSPFAQAHDLAAQLRPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R+  AGE V YG +      + + V A+GYADGYP                G   
Sbjct: 238 KVIAVRELPAGEPVGYGARFVTEAPTRVGVVAMGYADGYPQFAVN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    ++G+++MDM   D+TD     VG  ++++G  +    V   S T++Y LL  
Sbjct: 287 AIDGRPGRLVGRVSMDMLTIDLTDHPQAGVGSTVELWGNQVSAAQVVANSQTSSYRLLCA 346

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 347 V-KRVPLHYA 355


>gi|94991109|ref|YP_599209.1| alanine racemase [Streptococcus pyogenes MGAS10270]
 gi|166969431|sp|Q1JF94|ALR_STRPD RecName: Full=Alanine racemase
 gi|94544617|gb|ABF34665.1| Alanine racemase [Streptococcus pyogenes MGAS10270]
          Length = 366

 Score =  365 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 162/376 (43%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S+        +T AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + ++     +   I+S+  +             
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+GL   + ++   +S  +    +  I +H A AD+      + QL+ F
Sbjct: 125 KVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + LI+  +        ++S+  +   +  F   R GI  YG       ++   P+Q  ++
Sbjct: 185 KKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSNLSLPFPLQEALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG+ V YG      +   +    IGYADG+   + G            
Sbjct: 245 LESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    I+G+++MD     ++ +  +  G  + + G     +I   D+A    T 
Sbjct: 295 --VLVDGQFCEIIGRVSMDQLTIRLSKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIPRIY 366


>gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM
           22836]
          Length = 823

 Score =  365 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 171/370 (46%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+ +N++     L+   +   +VK + YG G  ++A  L         V   EE
Sbjct: 465 LDIDLDAIVHNYNFYRSRLNPKTKMVCMVKADGYGTGATEVAKTLQYHKCDYLAVAVAEE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR    +  I VL     G E++     L P + +   L  + K        ++P  
Sbjct: 525 GVFLRKQGIKVPIIVLNSEVGGFEELAM-YALEPEVYNFRILDAFIKEAKLQGITNYPIH 583

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + ++  +      ++   ++  + SHLA ++  +  +    Q++ F+ 
Sbjct: 584 IKIDTGMHRLGFTEEDIPELMERIKSQTGVRIQSVFSHLAASESWNFDNFTVDQIKTFKK 643

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           +    +      +   + +S+GI   PN    + R GISLYG +      + ++ V T +
Sbjct: 644 ITKEIEKNCHYQVMKHILNSAGIERFPNEQMDMVRLGISLYGVSAS--GLNGLRNVCTLK 701

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+   AGE V YG +    +D+ IA   IGYADG                   GK
Sbjct: 702 TTILQIKDIKAGETVGYGRKGHFDKDATIATIRIGYADGLSRQFGNGV----------GK 751

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G+MVPI+G I MD++M D+T    ++ GD + IFG +  + D+A    T  Y++L 
Sbjct: 752 VLVNGHMVPIVGNICMDLSMIDVTGI-EVKEGDSVVIFGENPSVVDLAKEINTIPYEVLT 810

Query: 360 RIGTRYAKFY 369
            I +R    Y
Sbjct: 811 SISSRVKHIY 820


>gi|325964088|ref|YP_004241994.1| alanine racemase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470175|gb|ADX73860.1| alanine racemase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 405

 Score =  365 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 155/378 (41%), Gaps = 29/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL A+++N   + A +  A+  AVVK +AYG G   +A A   AG     V  + E 
Sbjct: 24  AVIDLDAIRHNVRRLAAAASPAKVMAVVKADAYGHGAVPVARAALEAGASWLGVAHISEA 83

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR     A +                  +    S        +            L+V
Sbjct: 84  LALRAAGIDAPLLAWLHTPDSNFGAAVAAGVDIGCSGWELDRIVAAAREQERPARIHLKV 143

Query: 129 DTGFNRLGLSLQEALDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G +L         +    ++ L ++  I SHLA AD+P       QL  FR +
Sbjct: 144 DTGLGRNGATLDTWDHIVGEAMEYQDQGLLRVVGIFSHLAVADEPERPETDQQLATFREV 203

Query: 186 ISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237
           ++  +          LA++   L  P+ HF L R G+ +YG +    +S     ++  +T
Sbjct: 204 LAVAEDAGVDPEVRHLANTPATLSRPDTHFDLVRVGLGIYGLSPFAGQSSAELGLRPAMT 263

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +   ++   G+ VSYG +   T  S + +  +GYADG P             +  G
Sbjct: 264 LRTLVSQCKEVPDGQGVSYGLRYHTTGASTLGLIPMGYADGVPR------------IATG 311

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIE--VGDYIQIFGP----DIKLDDVALASG 351
           G   + G   P++G+I MD  + D   ++     +G   ++FG         DD A A+G
Sbjct: 312 GPVRVAGRTYPVVGRIAMDQMVIDFGSTVQAGSLLGAEAELFGDGSDGGPTADDWARAAG 371

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++ RI  R  + +
Sbjct: 372 TINYEIVTRISPRVPRCF 389


>gi|15675637|ref|NP_269811.1| alanine racemase [Streptococcus pyogenes M1 GAS]
 gi|71911345|ref|YP_282895.1| alanine racemase [Streptococcus pyogenes MGAS5005]
 gi|20137226|sp|Q99Y98|ALR_STRP1 RecName: Full=Alanine racemase
 gi|13622847|gb|AAK34532.1| putative alanine racemase [Streptococcus pyogenes M1 GAS]
 gi|71854127|gb|AAZ52150.1| alanine racemase [Streptococcus pyogenes MGAS5005]
          Length = 366

 Score =  365 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S+        +T AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + ++     +   I+S+  +             
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+GL   + ++   +S  +    +  I +H A AD+      + QL+ F
Sbjct: 125 KVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + LI+  +        ++S+  +   +  F   R GI  YG       ++   P+Q  ++
Sbjct: 185 KKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPLQEALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG+ V YG      +   +    IGYADG+   + G            
Sbjct: 245 LESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    I+G+++MD     +  +  +  G  + + G     +I   D+A    T 
Sbjct: 295 --VLVDGQFCEIIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIPRIY 366


>gi|331701928|ref|YP_004398887.1| alanine racemase [Lactobacillus buchneri NRRL B-30929]
 gi|329129271|gb|AEB73824.1| Alanine racemase [Lactobacillus buchneri NRRL B-30929]
          Length = 374

 Score =  365 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 144/382 (37%), Gaps = 30/382 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              ++ +DL A+ +N H       +      VVK + YG G  ++A     AG   F V 
Sbjct: 7   RNAQVTVDLAAIYSNIHHAKQRLDDGDDLFQVVKADGYGHGAVQVAEIAEKAGATGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GV 120
            ++E ++LR    +  + VL    P   ++    N+   + S+  L   +KL+       
Sbjct: 67  ILDEALQLRQAGIRLPVLVLGITDPECAQLAASENISLTVGSIDWLNQAAKLLDTSAFKG 126

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL--SLIISHLACADDPSSHVNSVQ 178
                L +DTG  R+G    + L       N    ++    I +H A AD P       Q
Sbjct: 127 RLNIHLALDTGMGRIGFQTADELKAAVGVLNAHSDRMSFEGIFTHFATADSPDDTYFKFQ 186

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPM 232
            + F+  ++    +     +A+S+  L        + R GI+ YG            + +
Sbjct: 187 YQNFQDFMAVLDKRPKYVHVANSATSLWHKVCGGNMIRFGIAAYGLNPSGRDITQLPYQL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  + I   +    G  + YG       D  I    +GYADG P  + G       
Sbjct: 247 KPGLSVTSEIDFSKLVKKGRSIGYGATYTTDSDQWIGTVPVGYADGIPRAMQGFS----- 301

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                    + G+  PI+G++ MD  M  +        G  + I G      I  DDVA 
Sbjct: 302 -------VLVDGHKCPIVGRVCMDQFMIRLPHDYP--YGTTVTIIGQSGDAQITADDVAD 352

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
              T +Y+++  +  R  + Y 
Sbjct: 353 YLHTISYEVICGLSPRLRRKYV 374


>gi|304396143|ref|ZP_07378025.1| alanine racemase [Pantoea sp. aB]
 gi|304356512|gb|EFM20877.1| alanine racemase [Pantoea sp. aB]
          Length = 356

 Score =  365 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 164/370 (44%), Gaps = 26/370 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   I+  AL+ N   +   +  +R  +VVK NAYG G E++  AL       F + 
Sbjct: 2   SRPIIATINQQALRQNLAVVRQAAPASRVWSVVKANAYGHGIERVREALSA--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE ++LR    +  I +L G   P   ++I    L   + S  Q      L S  +S 
Sbjct: 60  NMEEAIQLREQGWKKPILLLEGFFQPEDLQLIDRYRLTTSVHSNWQ---IKALASAQLSA 116

Query: 123 PYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           P    L++++G NRLG   ++                  +++H A A++    V  +Q  
Sbjct: 117 PVDIYLKMNSGMNRLGFRPEQVNGAWQKLRALSNVGEMTLMAHFADAENSQGLVAPLQ-- 174

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R             SL++S+  L  P  HF   RPGI LYG +   N        +Q V+
Sbjct: 175 RIEQAAEGLSC-PRSLSNSACTLWHPEAHFDWVRPGIILYGASPSGNWQDIAGSGLQPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II +++  AG+ V YG +   +    I V A GYADGYP                
Sbjct: 234 TLSSEIIAVQQLQAGDGVGYGYRYHASTAQRIGVVACGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G M  ++G ++MDM   D+T      +G  ++++G  +K+D VA A+GT  Y+
Sbjct: 283 GTPVCVDGVMTQVVGAVSMDMITVDLTPCPQAGIGSAVELWGEQVKIDQVAKAAGTVGYE 342

Query: 357 LLVRIGTRYA 366
           L+  +  R  
Sbjct: 343 LMCALAPRVP 352


>gi|311740005|ref|ZP_07713839.1| alanine racemase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305078|gb|EFQ81147.1| alanine racemase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 368

 Score =  365 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 95/372 (25%), Positives = 161/372 (43%), Gaps = 22/372 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            L+  IDL+A+ +N   +        +   VVK +AYG G  K+ P +  AG   F V +
Sbjct: 4   MLKTTIDLSAIAHNVRLIKEKVGPEVKLMCVVKADAYGHGAAKVVPVMARAGADCFGVAT 63

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + E V LR     A I           +      +   ++S+ Q     KL+        
Sbjct: 64  LREAVDLRRAGVDAPIVAWIWQTDEILEEALANGIEVAVNSLEQ---AHKLVKADFPAEV 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++V+TG +R G+  ++  +      +    ++  ++SH ACAD+P +  N  Q E FRT
Sbjct: 121 YVKVETGMHRSGVDEEDWAETFKVLRDAPHIKVLGLMSHFACADEPDNPHNDAQEEAFRT 180

Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            +   + I        LA+S  +L  P+ +F+  R G + YG      + H ++  +T  
Sbjct: 181 ALQLAREIGLECPVNHLANSPAVLTRPSSYFEQVRVGAACYGLEPIEGREHGLRPAMTWS 240

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            +I  ++    GE   YG   K  +   +A    GYADG P    G              
Sbjct: 241 GQIFNVKPIQPGEGTCYGLTWKADKPGFLATVDCGYADGLPRGYQGDL-----------H 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357
             I G++ P +G+I MD  + D+ ++   ++ G    IFG   +   D+A A+GT NY++
Sbjct: 290 VGIGGHLYPQVGRICMDQIVVDLGENPHGVDTGQDAVIFGNGGVSATDLAAAAGTINYEV 349

Query: 358 LVRIGTRYAKFY 369
           +     R  + Y
Sbjct: 350 VCLPDGRTEREY 361


>gi|21911099|ref|NP_665367.1| alanine racemase [Streptococcus pyogenes MGAS315]
 gi|28895216|ref|NP_801566.1| alanine racemase [Streptococcus pyogenes SSI-1]
 gi|56808267|ref|ZP_00366035.1| COG0787: Alanine racemase [Streptococcus pyogenes M49 591]
 gi|139473190|ref|YP_001127905.1| alanine racemase [Streptococcus pyogenes str. Manfredo]
 gi|209559906|ref|YP_002286378.1| alanine racemase [Streptococcus pyogenes NZ131]
 gi|25452781|sp|Q8K5Z8|ALR_STRP3 RecName: Full=Alanine racemase
 gi|166969433|sp|A2RCT3|ALR_STRPG RecName: Full=Alanine racemase
 gi|226711064|sp|B5XI21|ALR_STRPZ RecName: Full=Alanine racemase
 gi|21905309|gb|AAM80170.1| putative alanine racemase [Streptococcus pyogenes MGAS315]
 gi|28810462|dbj|BAC63399.1| putative alanine racemase [Streptococcus pyogenes SSI-1]
 gi|134271436|emb|CAM29656.1| alanine racemase [Streptococcus pyogenes str. Manfredo]
 gi|209541107|gb|ACI61683.1| Alanine racemase [Streptococcus pyogenes NZ131]
          Length = 366

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 162/376 (43%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S+        +T AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + ++     +   I+S+  +             
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+GL   + ++   +S  +    +  I +H A AD+      + QL+ F
Sbjct: 125 KVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + LI+  +        ++S+  +   +  F   R GI  YG       ++   P+Q  ++
Sbjct: 185 KKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPLQEALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG+ V YG      +   +    IGYADG+   + G            
Sbjct: 245 LESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    I+G+++MD     ++ +  +  G  + + G     +I   D+A    T 
Sbjct: 295 --VLVDGQFCEIIGRVSMDQLTIRLSKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIPRIY 366


>gi|167563210|ref|ZP_02356126.1| alanine racemase [Burkholderia oklahomensis EO147]
 gi|167570394|ref|ZP_02363268.1| alanine racemase [Burkholderia oklahomensis C6786]
          Length = 356

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   + +++  A+VK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLTVVRRHAAHSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + AD      +  Q+  F 
Sbjct: 120 VQLKMNSGMNRLGYTPEKFRAAWERARACPGIGQITLMTHFSDADSERGVAD--QIATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G   SLA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAEGIAGA-RSLANSAAVLWHPSTHFDWVRPGIMLYGASPSGRSADIADKGLKPTMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTLAKGQTVGYGSMFAAQDTMRIGVVACGYADGYPR-----------IAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VVVDGVRTRIVGRVSMDMITVDLTPVPQAGVGSRVELWGETLPIDDVAAQCGTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|21223124|ref|NP_628903.1| alanine racemase [Streptomyces coelicolor A3(2)]
 gi|6647408|sp|O86786|ALR_STRCO RecName: Full=Alanine racemase
 gi|3449257|emb|CAA20401.1| putative alanine racemase [Streptomyces coelicolor A3(2)]
          Length = 391

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 103/387 (26%), Positives = 167/387 (43%), Gaps = 34/387 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R +IDL AL+ N  ++   +  A   AVVK +AYG G    A A   AG       + 
Sbjct: 15  RARAEIDLAALRANVRALRERAPGAALMAVVKADAYGHGAIPCARAAVAAGATWLGTATP 74

Query: 66  EEGVKLRLYTP----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120
           +E + LR   P      RI        G  +   +  L   +S++  +        + GV
Sbjct: 75  QEALALRAAEPGLPDDVRIMCWLWTPGGPWREAVEARLDVSVSAMWAMEEVTGAARAAGV 134

Query: 121 SHPYALQVDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                L+ DTG  R G       +  +     +  + L +++ + SH ACAD+P     +
Sbjct: 135 PARVQLKADTGLGRGGCQPGADWERLVGAALRAEEEGLLRVTGLWSHFACADEPGHPSIA 194

Query: 177 VQLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---- 227
            QL RFR + ++   +G+      +A+S   L  P+ HF L RPGI++YG +        
Sbjct: 195 AQLTRFREMTAYAEQRGLRPEVRHIANSPATLTLPDAHFDLVRPGIAMYGVSPSPEIGTP 254

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+T  A + L+++   G  VSYG       ++ + +  +GYADG P   S   
Sbjct: 255 ADFGLRPVMTLAASLALVKQVPGGHGVSYGHHYTTPGETTLGLVPLGYADGIPRHASSS- 313

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKL 343
                     G   + G    + G+I MD  + D+      E G    +FGP    +   
Sbjct: 314 ----------GPVLVDGKWRTVAGRIAMDQFVVDLGGDRP-EPGAEAVLFGPGDRGEPTA 362

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
           +D A A+GT  Y+++ RIG+R  + Y 
Sbjct: 363 EDWAQAAGTIAYEIVTRIGSRVPRVYV 389


>gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056]
 gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056]
          Length = 828

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 147/370 (39%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +     L    +   +VK +AYG G  +IA  L         V   +E
Sbjct: 470 LEVNLGAMIANLNYYRGKLRPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 529

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR     A I ++        K +FD  L P + S   L    K        + P  
Sbjct: 530 GSDLRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLEALIKEAEKEGITNFPIH 588

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG +  +          +       + SH   +D P        Q+E F  
Sbjct: 589 VKLDTGMHRLGFAPDDMPLLIERLKGQNAVIPRSVFSHFVGSDAPQFDAFTRRQIEIFEK 648

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +S+GI   P   F + R GI LYG +   N       V T +
Sbjct: 649 ASMQLQEAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGVSPIDNSIMNN--VSTLK 706

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ IR     + V Y  +  L R S IA   IGYADG    L                
Sbjct: 707 TTILQIRDVPEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLGNGH----------AY 756

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD ++IFG  + +  ++   GT  Y++L 
Sbjct: 757 CLVNGQRAPYVGNICMDVCMIDVTDI-DCKEGDSVEIFGDHLPITVLSDVLGTIPYEVLT 815

Query: 360 RIGTRYAKFY 369
            + TR  + Y
Sbjct: 816 SVSTRVKRVY 825


>gi|260466737|ref|ZP_05812923.1| alanine racemase [Mesorhizobium opportunistum WSM2075]
 gi|259029467|gb|EEW30757.1| alanine racemase [Mesorhizobium opportunistum WSM2075]
          Length = 379

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 179/366 (48%), Gaps = 17/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A++ N+  + A  G  R A VVK + YGLG  ++A AL   G   FFV  + EG
Sbjct: 25  LTIDLGAIRENYRRLKAQLGGVRCAGVVKADGYGLGATQVASALMKDGCDTFFVALLAEG 84

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           + LR        I+VL G+ PG E       L  VI+S  QL  +       G   P A+
Sbjct: 85  ISLRKAIGAGPDIYVLNGLPPGSEPEAVAAGLCAVINSGAQLKAWRAAAHGAGRQLPAAI 144

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVD+G +RLG++  E      ++   +   +  + SHLACAD+P    N  Q   F  L 
Sbjct: 145 QVDSGMSRLGMAPAEVEAVVEDTGAFEGIDVRYVTSHLACADEPRHPANEQQRLAFERLR 204

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +      ASLA+SSGI LGP YH+ L RPG +LYG     + ++PM  VV  +A++   R
Sbjct: 205 ALLPAAPASLANSSGIFLGPRYHYDLARPGAALYGINPTPDATNPMLPVVGLQAKVAQTR 264

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YG          +A  + GYADG+                     + +G  
Sbjct: 265 GIEKGTGVGYGHTYHAEGPRSLATISFGYADGWLRR-------------SASAAWFEGVR 311

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +P LG+++MD  + D++      +  GD +++ GP   +DD A  +GT  Y++L  +GTR
Sbjct: 312 LPFLGRVSMDSIILDVSALSPGKLREGDLVELLGPAQSVDDAAGHAGTIGYEILASLGTR 371

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 372 FHRRYV 377


>gi|110632757|ref|YP_672965.1| alanine racemase [Mesorhizobium sp. BNC1]
 gi|110283741|gb|ABG61800.1| alanine racemase [Chelativorans sp. BNC1]
          Length = 385

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 195/364 (53%), Gaps = 16/364 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  AAVVK +AYGLG  ++A AL +AG + FFV  +EEG
Sbjct: 11  LTVDLEAVTANWLLLAGRAAGAECAAVVKADAYGLGAAEVATALQDAGCRTFFVAHLEEG 70

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYAL 126
           + LR      +RIFVL G  P  ++      L PV+ ++ +L  + K  +      P AL
Sbjct: 71  LSLRRTLGSGSRIFVLNGTPPDTQEEFGQAALTPVVGTINELQAWRKHAATKRGPIPVAL 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG +RLGLS  +      ++   +   + L++SHLACAD+P    N  Q  RF+ L 
Sbjct: 131 QLDTGMSRLGLSPSDVSGIAADTTLLRGIHIELVMSHLACADEPGHSANESQRSRFQRLR 190

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                  AS+A+SSG  LG  +HF + RPG +LYG      + +PM  VV   AR++ +R
Sbjct: 191 RMLPQAPASIANSSGTFLGKGFHFSMIRPGAALYGINPTPYQPNPMCQVVKVAARVLQVR 250

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +A AG  + YG   +  R S++A  A+GYADG+P   S             G  + +G  
Sbjct: 251 QARAGTGIGYGHAARARRLSMLATIALGYADGWPCQAS-------------GAAYYRGQR 297

Query: 307 VPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +P +G+++MD  + D+T        GD ++   P   +D++   +G+  Y++L R+G R+
Sbjct: 298 LPFIGRVSMDSIILDVTGCSNPPREGDLVEFICPSQTVDEIGRLAGSIGYEVLTRLGRRF 357

Query: 366 AKFY 369
            + Y
Sbjct: 358 HRRY 361


>gi|168233845|ref|ZP_02658903.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194471678|ref|ZP_03077662.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194458042|gb|EDX46881.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332109|gb|EDZ18873.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 356

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 164/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++    GE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSVGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|257867063|ref|ZP_05646716.1| alanine racemase [Enterococcus casseliflavus EC30]
 gi|257873398|ref|ZP_05653051.1| alanine racemase [Enterococcus casseliflavus EC10]
 gi|257801119|gb|EEV30049.1| alanine racemase [Enterococcus casseliflavus EC30]
 gi|257807562|gb|EEV36384.1| alanine racemase [Enterococcus casseliflavus EC10]
          Length = 373

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 151/380 (39%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  ID TA+  N  H +  L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTKAIIDTTAITENIKHEIAHLPSETFLFAVVKANGYGHGAVQTALAAKEGGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS---CG 119
            +++E ++LR       I +L  ++     ++   +L   ++S+  L      +      
Sbjct: 66  ATIDEAIELREAGITDPILILGVVNVCDITLLTTYDLSFPVASMDWLIEAGAYLEENPLN 125

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 ++VDTG  R+G  +++E         +    +   I +H + AD   +     Q
Sbjct: 126 KPLKVHIKVDTGMGRIGFLTVEEVRQAILWLEDHPSFEWEGIFTHFSTADQADTSYWETQ 185

Query: 179 LERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            +RF+ +++    +       +S+  L        + R GI++YG       +++   ++
Sbjct: 186 HQRFKEVLTVLPYLPTYIHTGNSATSLWHKEAVGNMVRFGIAMYGLNPSGHALSEPFSLK 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++  + +I ++    G  + YG      R   I    IGYADG+   + G        
Sbjct: 246 PALSLVSELIQVKLLEKGAGIGYGETYITPRQEWIGTVPIGYADGWLRKMQGFSI----- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALA 349
                   ++G    I+G++ MD  M  +  + ++  G  + +     G  I + DVA  
Sbjct: 301 -------LVEGERCEIVGRVCMDQLMIRLPRAFAV--GTPVTLIGENHGEQITMQDVADQ 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y++   +  R  + Y
Sbjct: 352 LETIHYEVACTLSARIPREY 371


>gi|332523529|ref|ZP_08399781.1| alanine racemase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314793|gb|EGJ27778.1| alanine racemase [Streptococcus porcinus str. Jelinkova 176]
          Length = 368

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 169/378 (44%), Gaps = 28/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +      +DL  ++NN  ++   +  + +  AVVK NAYG G  +++ A+    V  + V
Sbjct: 6   HRPTVATVDLKVIQNNIKAVQGHIPKDTKIYAVVKANAYGHGAVEVSKAIDKE-VDAYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121
           ++++E ++LR       I VL  +      +  +  +   ++S   L      +   ++ 
Sbjct: 65  SNLDEALELRQAGISKEILVLGVVLADDLLLAIENQITITVASQEWLDDAQAFLGGDLTN 124

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               ++VD+G  R+G+ SL EA     +    K+  +  I +H A AD+  +     QL 
Sbjct: 125 LHVHVKVDSGMGRIGVRSLAEADQLIAHLRQAKVI-VDGIFTHFATADEADTRKFETQLN 183

Query: 181 RFRTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
            F  L++H  YK      ++S+  L   +  F   R GI++YG      ++N  +P++  
Sbjct: 184 FFTDLVNHLTYKPALVHASNSATSLWHSDTIFNAVRLGIAIYGSNPSGSELNLPYPLKPA 243

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  +R++ +++  AG+ V YG     T    +    IGYADG+   L G          
Sbjct: 244 LSLRSRLVHVKEIHAGDTVGYGATYTATETEFVGTIPIGYADGWTRDLQGF--------- 294

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
              +  I G    I+G+++MD     +      E+G  + + G     +I   D+A   G
Sbjct: 295 ---EVLIDGQFCQIIGRVSMDQITVRLPKVY--EIGKLVTLIGTSGDQEITATDLAEKKG 349

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++L  +  R  + Y
Sbjct: 350 TINYEVLCLLSDRIPREY 367


>gi|312863275|ref|ZP_07723513.1| alanine racemase [Streptococcus vestibularis F0396]
 gi|322516061|ref|ZP_08068998.1| alanine racemase [Streptococcus vestibularis ATCC 49124]
 gi|311100811|gb|EFQ59016.1| alanine racemase [Streptococcus vestibularis F0396]
 gi|322125476|gb|EFX96822.1| alanine racemase [Streptococcus vestibularis ATCC 49124]
          Length = 367

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 160/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     K+DL+A+  N   + +      +T AVVK NAYG G  ++A  +    V+ F V
Sbjct: 6   HRPTLAKVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHVSKQ-VEGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  + P +  +    N+   ++S+  L    K        
Sbjct: 65  SNLDEALELRQAGLEQPILILGVVLPDEVPLAIQENITLTVASLEWLEMAKKQGLDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++D+G  R+G+   E  D            +  I +H A AD+        QL  F
Sbjct: 125 TCHIKIDSGMGRIGVRNLEDADNLIAGLKDLGADVEGIFTHFATADEADDSKFKRQLAFF 184

Query: 183 RTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             L+++   +      ++S+  +      F   R G+ +YG       ++  + ++  ++
Sbjct: 185 TDLVNNLVDRPRLVHASNSATSIWHAETVFNAVRLGVVIYGLNPSGSVLDLPYNIRPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E  ++ ++   AG+ V YG     T D +I    IGYADG+   L G            
Sbjct: 245 LETALVHVKTLPAGKDVGYGATYTTTVDEVIGTIPIGYADGWTRDLQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G + PI+G+++MD     +     +  G  + + G +    I   +VA   GT 
Sbjct: 294 -HVIVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAEKRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRVPRSY 366


>gi|269792742|ref|YP_003317646.1| alanine racemase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100377|gb|ACZ19364.1| alanine racemase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 380

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 157/379 (41%), Gaps = 24/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R+++ L A+++N   + +  G  A+   VVK NAYGLG  ++  AL   GV  F V 
Sbjct: 3   RPTRMEVSLRAVRHNLDQIRSYVGGRAQVMGVVKANAYGLGARRVVEALRAQGVVRFAVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122
           + +E V+LR +     + VL    P     +   ++   + S+       ++    G   
Sbjct: 63  TPDEAVQLREWGVGEPVLVLGQCLPSAAGEMVAMDVTCAVGSLELARALSAEAERQGRQV 122

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VDTG  R+G    E         + +   +  I +H A AD+        QL RF
Sbjct: 123 KVHIKVDTGMGRIGFLPGELEAAMDQILSMRHLDVEGIFTHFATADEARLDHAEEQLRRF 182

Query: 183 RTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
              +     +G+        +S+  +  P+ H    RPGI LYG         P+   V 
Sbjct: 183 GDALDRMRCRGVRFRLRHACNSAATIRMPHGHLDAVRPGIILYGMRPSPLCPMPLNLEVP 242

Query: 238 AE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            E    +  +R+      +SYG +     +  IAV  IGY DGY   LSG          
Sbjct: 243 FEVNTAVAAVRELPPMWGISYGMRYVTRGNERIAVLPIGYRDGYARALSG---------- 292

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              +  I+G   P++G I MD  M D+TD  S++VGD + + G      I  ++ A    
Sbjct: 293 -KAQVLIRGRRFPVVGTICMDQCMVDVTDCPSVQVGDPVVLLGRQGDQAITPEEFASWLN 351

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++      R  + Y 
Sbjct: 352 TIVYEVPGMFSERVPRVYV 370


>gi|225869873|ref|YP_002745820.1| alanine racemase [Streptococcus equi subsp. equi 4047]
 gi|254802387|sp|C0M6I5|ALR_STRE4 RecName: Full=Alanine racemase
 gi|225699277|emb|CAW92611.1| alanine racemase [Streptococcus equi subsp. equi 4047]
          Length = 366

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 162/377 (42%), Gaps = 27/377 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     ++DL A++ N   ++       RT AVVK NAYG G   ++ A+ +  V  + V
Sbjct: 6   HRPTVARVDLEAIRANIDHIHQHIPKKVRTYAVVKANAYGHGAVAVSKAVEDQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  I   + ++     L   ++S+  L    K        
Sbjct: 65  SNLDEALELRQAGIDKEILILGVILASELQLAIKHQLTITVASLEWLELAKKESVDFSQL 124

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++VD+G  R+G+ SL EA        +  + QL  I +H A ADD    +   QL  
Sbjct: 125 HVHVKVDSGMGRIGVRSLAEANQLISILSDMGV-QLDGIFTHFATADDSDHAMFDKQLTF 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVV 236
           F+ L+       A    ++S+  L      F   R GI +YG     N      P++  +
Sbjct: 184 FKQLVEQLDKRPALVHASNSATSLWHSETIFNAIRLGIVIYGLNPSGNSLSLPCPLKEAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+R++ +++  AG+ V YG          +    IGYADG+   + G           
Sbjct: 244 SLESRLVHVKQIQAGDSVGYGASYVAAEPEYVGTLPIGYADGWTRNMQGF---------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             K  ++G    I+G+++MD     +  +    +G  + + G      I   DVA   GT
Sbjct: 294 --KVLVEGEFCDIIGRVSMDQLTIRLPKAYP--IGTKVTLIGQQGKQVITATDVADYRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++L  +  R  + Y
Sbjct: 350 INYEVLCLLSDRIPREY 366


>gi|170733394|ref|YP_001765341.1| alanine racemase [Burkholderia cenocepacia MC0-3]
 gi|169816636|gb|ACA91219.1| alanine racemase [Burkholderia cenocepacia MC0-3]
          Length = 356

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 151/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++  AVVK NAYG G  +  P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG   ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYVPEKYRAAWERARACPGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
                  G   SLA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAESIAGA-RSLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      V   ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVSARVELWGNALPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAARVP 352


>gi|118616650|ref|YP_904982.1| alanine racemase [Mycobacterium ulcerans Agy99]
 gi|166969420|sp|A0PME2|ALR_MYCUA RecName: Full=Alanine racemase
 gi|118568760|gb|ABL03511.1| alanine racemase, Alr [Mycobacterium ulcerans Agy99]
          Length = 388

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 165/379 (43%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+ +N   +   +G+A+  AVVK + YG G   +A     AG  +  V SV
Sbjct: 13  LAEAVVDLGAIAHNVRLLRERAGSAQVMAVVKADGYGHGATAVARTALAAGAVELGVASV 72

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR     A +                 ++   ISS+ Q           G +   
Sbjct: 73  DEALTLRADGITAPVLAWLHAPGMDFGPALAADVQIAISSIRQLDEALDAARRTGTTATV 132

Query: 125 ALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +++DTG NR G++     E +     +  +   +L  +++H+  AD P   +N +Q +R
Sbjct: 133 TVKIDTGLNRNGVAPALYPEMVTRLRQAVAEDAIRLRGLMTHMVHADAPEKPINDIQSQR 192

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTV 235
           F+ ++ H +  G+    A L++SS  +  P+    L RPGI++YG +         +   
Sbjct: 193 FKQMLDHARDQGVRFEVAHLSNSSATMARPDLTLDLVRPGIAVYGLSPVPRLGDMGLVPA 252

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + L++   AGE VSYG       D+ +A+  IGYADG   +L G          
Sbjct: 253 MTVKCAVALVKSVSAGEGVSYGHTWIAPHDTNVALLPIGYADGVFRSLGGRL-------- 304

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350
              +  I G   P +G++ MD  + D+      +  GD   +FGP    +    D A   
Sbjct: 305 ---EVLINGKRRPGVGRVCMDQFLVDLGPGPLDVAEGDEAILFGPGTRGEPTAQDWADLV 361

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+++     R  + Y
Sbjct: 362 GTIHYEVVTSPRGRITRVY 380


>gi|114569759|ref|YP_756439.1| alanine racemase [Maricaulis maris MCS10]
 gi|114340221|gb|ABI65501.1| alanine racemase [Maricaulis maris MCS10]
          Length = 366

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 187/371 (50%), Gaps = 19/371 (5%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            ++   RL IDL A+K N+ ++  L+  A   AVVK N YGLG  ++ PAL +AG + F+
Sbjct: 10  RAHPAPRLIIDLAAIKRNYAALQTLAPTASVGAVVKANGYGLGAAQVVPALADAGCRCFY 69

Query: 62  VTSVEEGVKLRLY--TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           V    E  + R       A IFV  G  P +   +   +L PVI+ + QL     L    
Sbjct: 70  VAHTSEAREAREALAGRPADIFVFNGFWPSELAELRQLSLFPVINDLQQLEDLRALA--- 126

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              P A+  DTG +RLGL   E      +        +  I+SHLAC+DDP   +N  Q 
Sbjct: 127 PDLPCAIHFDTGMSRLGLDAAETEALLADPARIDALDVRQIMSHLACSDDPDHPLNEQQR 186

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           +RF  +     GI ASL++S+G LLG  YHF + RPG++L+ G     ++ P + VV  +
Sbjct: 187 QRFERIRHALPGIPASLSNSTGTLLGQAYHFDMLRPGLALFSGMPAPGQASPFEPVVAID 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A I+ IR    G+ V YG      R   +A  A GYADG                  GG 
Sbjct: 247 APILQIRTLQPGDTVGYGACWTADRPRRVATVAAGYADGLLRAFGN-----------GGY 295

Query: 300 GFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           G I    VPILG+++MD+   DI      +  GD ++  GPDI  +++A ++ T +Y+ L
Sbjct: 296 GRIGETQVPILGRVSMDLICVDIDAVEEPVRPGDPVRFLGPDI--ENMADSAATISYEFL 353

Query: 359 VRIGTRYAKFY 369
           VR+G R+ + Y
Sbjct: 354 VRLGIRFDRSY 364


>gi|332201121|gb|EGJ15192.1| alanine racemase [Streptococcus pneumoniae GA47901]
          Length = 367

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 153/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K        ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEAPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|94989166|ref|YP_597267.1| alanine racemase [Streptococcus pyogenes MGAS9429]
 gi|94993056|ref|YP_601155.1| alanine racemase [Streptococcus pyogenes MGAS2096]
 gi|166969429|sp|Q1JA50|ALR_STRPB RecName: Full=Alanine racemase
 gi|166969430|sp|Q1JKA0|ALR_STRPC RecName: Full=Alanine racemase
 gi|94542674|gb|ABF32723.1| alanine racemase [Streptococcus pyogenes MGAS9429]
 gi|94546564|gb|ABF36611.1| Alanine racemase [Streptococcus pyogenes MGAS2096]
          Length = 366

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 162/376 (43%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S+        +T AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + ++     +   I+S+  +             
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+GL   + ++   +S  +    +  I +H A AD+      + QL+ F
Sbjct: 125 KVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + LI+  +        ++S+  +   +  F   R GI  YG       ++   P+Q  ++
Sbjct: 185 KKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPLQEALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG+ V YG      +   +    IGYADG+   + G            
Sbjct: 245 LESSLVHVKMISAGDTVGYGVTYTAKKSEYVGTVPIGYADGWTRNMQGFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    I+G+++MD     ++ +  +  G  + + G     +I   D+A    T 
Sbjct: 295 --VLVDGQFCEIIGRVSMDQLTIRLSKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIPRIY 366


>gi|149021206|ref|ZP_01835452.1| alanine racemase [Streptococcus pneumoniae SP23-BS72]
 gi|147930307|gb|EDK81291.1| alanine racemase [Streptococcus pneumoniae SP23-BS72]
          Length = 367

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVNGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G      ++   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ I+   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHIKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|332687104|ref|YP_004456878.1| alanine racemase [Melissococcus plutonius ATCC 35311]
 gi|332371113|dbj|BAK22069.1| alanine racemase [Melissococcus plutonius ATCC 35311]
          Length = 372

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 159/381 (41%), Gaps = 28/381 (7%)

Query: 3   SNEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   ++ ID  A+ NN H+    L+      AVVK N YG G  + A A    G   F 
Sbjct: 5   RHRPTKIHIDTQAIYNNVHNEKKRLAAETELFAVVKANGYGHGAVQTAYAAKKGGATGFC 64

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118
           V  ++E ++LR  +    I +L  + P   + +   +L   ++    L   + ++     
Sbjct: 65  VALLDEALELREASLPDPILILGIVMPDYIEDLLAYDLSVTVTDQSWLERAAIILEKLKP 124

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  ++VDTG  R+G   + A+    N   N    +   I +H + AD+  +     
Sbjct: 125 RKPLRLHIKVDTGMGRIGFLTETAVKKAINTITNNPYMEWEGIFTHFSTADERDTDYFDH 184

Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPM 232
           Q E+F+ +I     +     +++S+  L     ++ + R G+++YG      K    +P+
Sbjct: 185 QNEKFQKIIQILPFLPQYVHVSNSATALWHQENNYNMVRFGVAMYGLNPSGGKLATPYPL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++  + ++ ++K  AGE + YG     ++D  I    +GYADG+   + G       
Sbjct: 245 LPALSLTSELVQVKKLPAGEGIGYGETYITSQDEWIGTFPMGYADGWLRHMQGF------ 298

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                    + G    I+G+++MD  M  +   + +  G  + + G D    I L  +A 
Sbjct: 299 ------YVLVNGEKSEIIGRVSMDQCMIHLKKEIPV--GTKVTLVGKDQEEEITLQMIAD 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T +Y++      R  + Y
Sbjct: 351 HLQTIHYEVACTFSQRVPREY 371


>gi|56477426|ref|YP_159015.1| alanine racemase [Aromatoleum aromaticum EbN1]
 gi|81821118|sp|Q5P3K0|ALR_AZOSE RecName: Full=Alanine racemase
 gi|56313469|emb|CAI08114.1| Alanine racemase [Aromatoleum aromaticum EbN1]
          Length = 353

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 167/367 (45%), Gaps = 17/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+H   +  G  R  AVVK NAYG G  +       A    F V  
Sbjct: 2   RPARALIDLDALRHNYHLARSRHGG-RALAVVKANAYGHGAAQ-CARALAADADGFAVGF 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR       I +L G+  P +   +   +L  V+    QL          +   
Sbjct: 60  LEEALELRAAGIDQPILLLEGVFAPAELDEVVRHDLWIVVHHAEQLRIIDHARPA-LPLE 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NR G    E         +        +++H A AD+P     + QL  F 
Sbjct: 119 VWLKMNSGMNRAGFLSHELRPAWQRLKDSGKVGGITLMTHFARADEPQVLATTEQLTAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
           T      G   SLA+S  IL  P  H    RPGI LYG     ++ + ++ V+T E+ +I
Sbjct: 179 TATRELPG-PRSLANSGAILGWPAAHRDWARPGILLYGADPMPDEPNGLRPVMTLESAVI 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AG  + YG +    R +   + A+GYADGYP ++             G    + 
Sbjct: 238 AVREIPAGAPLGYGARFHAERATRAGLVALGYADGYPRSVPN-----------GTPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ++G+++MD+   D+TD     +G  ++++G +I ++ +A A+ T +Y+LL  +  
Sbjct: 287 GLRTRLIGRVSMDLLTIDLTDLPDAGLGSRVELWGANIPVNRIAQAAKTISYELLCNV-K 345

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 346 RVRFEYS 352


>gi|150004319|ref|YP_001299063.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides vulgatus ATCC 8482]
 gi|149932743|gb|ABR39441.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides vulgatus ATCC 8482]
          Length = 821

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 149/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR       I ++        K +FD  L P + S   L    K        + P  
Sbjct: 523 GSDLRKAGITCSIMIMNP-ELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + +E  +       +       + SHL  +D          Q+E F  
Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +++GI   P   F + R GI LYG     N    +  V T +
Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTN--QIIHNVSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I +    E V Y  +  L RDS IA   IGYADG    L                
Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD   IFG D+ +  ++    T  Y++L 
Sbjct: 750 CLVNGQKAPYVGNICMDVCMIDVTDI-DCKEGDKTIIFGDDLPVTVLSEILETIPYEILT 808

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 809 SVSNRVKRVY 818


>gi|257054529|ref|YP_003132361.1| alanine racemase [Saccharomonospora viridis DSM 43017]
 gi|256584401|gb|ACU95534.1| alanine racemase [Saccharomonospora viridis DSM 43017]
          Length = 378

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 98/374 (26%), Positives = 164/374 (43%), Gaps = 26/374 (6%)

Query: 1   MHSNEFLRLKI--DLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M      R ++  DL A+++N   +   A +  A T AVVK + YG G   +A A   AG
Sbjct: 1   MSGMSLPRAEVVVDLEAIRHNVRLLASRAAASGAETMAVVKADGYGHGAVPVARAAVEAG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKL 115
                V S++E + LR      R+               + ++   +SS           
Sbjct: 61  ATWLGVASLDEALALRNAGLTTRLMSWLDTPDVDFAPAVERDIDVSVSSTGELARAVDAA 120

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
              G      L++DTG +R G   +        +  +   ++  + SHLACAD+P     
Sbjct: 121 ARVGRRARVHLKIDTGLSRNGCPAELWPTLVKAAAAEDGVEVVGMWSHLACADEPGHPAT 180

Query: 176 SVQLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
             Q ERF    +  +         LA+S+  L  P+ HF L RPGI++YG    +++   
Sbjct: 181 EAQAERFAAAYAVAREAGLSPLRHLANSAATLTRPDLHFDLVRPGIAVYGLNP-VSQPED 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +T  + ++L ++  AGE VSYG     + D+ +A+  +GYADG P TLSG  S   
Sbjct: 240 LRPAMTFRSSVVLTKRIRAGESVSYGQTWTASADTTVALVPVGYADGVPRTLSGRLS--- 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                    ++ G   P++G++ MD  + D  D    E+G  + +FG          + A
Sbjct: 297 --------VWLNGTRRPVVGRVCMDQLVVDCGDDEP-ELGAEVVLFGTGEGGMPTATEWA 347

Query: 348 LASGTTNYDLLVRI 361
              GT +Y+++  +
Sbjct: 348 EKIGTIDYEIVTGM 361


>gi|295136431|ref|YP_003587107.1| alanine racemase [Zunongwangia profunda SM-A87]
 gi|294984446|gb|ADF54911.1| alanine racemase [Zunongwangia profunda SM-A87]
          Length = 368

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 108/376 (28%), Positives = 160/376 (42%), Gaps = 21/376 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M   +   L+IDL +L++N+  + +      +  AVVK  AYG     IA  L  AG+  
Sbjct: 1   MPKAQETVLEIDLKSLEHNYQYLRSKVEPTVKMMAVVKAFAYGSDSVTIAAKLEKAGIDH 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V   +EG  LR    +  + VL+   P    ++ D  L P + S   LT + K     
Sbjct: 61  FAVAYTKEGETLRAGGIEKPVLVLHP-QPHNLTLLIDNCLTPSLYSKHILTEFIKTAEAL 119

Query: 120 V--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176
               +P  + ++TG NRLG  L+E         N    +L  I SHLA ++D        
Sbjct: 120 KLKEYPVHININTGLNRLGFGLEEIDQVITLFKNTLAVRLVGIYSHLAASEDLAEKEFTQ 179

Query: 177 VQLERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q+E F+      L +    I   L ++SGIL  P   F + R GI LYG  +   +   
Sbjct: 180 GQIETFKKASGKILKAFDHKIMRHLCNTSGILNYPEATFDMVRTGIGLYGYGNSAQEDKK 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V T +  I  I    A E V Y       RD+  A   IG+ADG             
Sbjct: 240 LKPVGTLKTIISQIHNIKAEESVGYNRAFIAKRDTTTATLPIGHADGISRIYG------- 292

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                     I     PI+G + MDM M D+T     + GD + IFG +   + +A  +G
Sbjct: 293 ---KQKTAVLINDKEAPIIGNVCMDMIMVDVTGI-ECKEGDQVIIFGKERSAEKLANNAG 348

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y+L+  I  R  +
Sbjct: 349 TISYELITSISQRVKR 364


>gi|221133975|ref|ZP_03560280.1| alanine racemase [Glaciecola sp. HTCC2999]
          Length = 367

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 113/372 (30%), Positives = 181/372 (48%), Gaps = 25/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID+ AL +N+H     +  ++T AV+K + YG G  KIA  L +     F V  ++E 
Sbjct: 7   AHIDINALLHNYHQAKNAAPQSQTMAVIKADGYGHGMLKIAQCLADV-ADGFAVAFIDEA 65

Query: 69  VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS----CGVSHP 123
           +  R       I VL G H P    +  D +L  V+    Q+ +  +  +          
Sbjct: 66  IACRDAGLTQPILVLEGAHSPEDIVLAVDYDLWLVMHQPEQIDWLVEFDATLSVDETKPT 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
              + DTG +RLGLS  E         ++ L   ++++ H ACADD S+ +N+ QL +  
Sbjct: 126 VWFKCDTGLHRLGLSPNELETALRRVPSEYLDN-AVLMGHFACADDLSNPMNAHQLTQLN 184

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVVTA 238
            L + Y+ +  S+A+S  I+   + H Q  R GI+LYG         +  +  ++ V+T 
Sbjct: 185 DLANRYQ-LPISMANSPAIVADTDSHGQWNRLGIALYGAEPLNRSSAVQSNVVLKPVMTL 243

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A II +R+   G+ V YG   +  R S+IA  AIGY DGYP                G 
Sbjct: 244 TAAIIGLRQIQPGDAVGYGQTWQAQRPSMIATVAIGYGDGYPRHA-----------PSGT 292

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSI-EVGDYIQIFGPDIKLDDVALASGTTNYDL 357
             F++G  VP++G+++MDM   D+TD   +  +GD ++++G ++ +  VA    T NY+L
Sbjct: 293 PVFLQGQTVPLVGRVSMDMITVDVTDLSQVPNIGDMVELWGANLSVTTVAAHINTINYEL 352

Query: 358 LVRIGTRYAKFY 369
           + RI  R  K Y
Sbjct: 353 VTRISPRVTKTY 364


>gi|227894495|ref|ZP_04012300.1| alanine racemase [Lactobacillus ultunensis DSM 16047]
 gi|227863654|gb|EEJ71075.1| alanine racemase [Lactobacillus ultunensis DSM 16047]
          Length = 376

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 150/383 (39%), Gaps = 32/383 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A++ N  + +  L+   +  AVVK NAYG G  ++A      G   F V
Sbjct: 6   HRPAVVKVNLGAIRRNLENEIKHLAPGQKMLAVVKANAYGHGAVEVAKVATEVGAAGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I    ++   + ++  L    K L    + 
Sbjct: 66  AILDEALQLRRADIVKPILVLGVVSPEYAPIAAVNDVSLTVPNLEWLKEAEKYLAKENLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ--LSLIISHLACADDPSSHVNSVQL 179
               L +D+G  R+G S  E      N F +      +  + +H A AD         Q 
Sbjct: 126 LKIHLGIDSGMGRIGFSEDEDF-IAANKFLENNDHFFVEGMFAHFASADSADETYFKHQC 184

Query: 180 ERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----- 232
           E+F  + S    K     + +++  +        L R GI +YG     N   P      
Sbjct: 185 EKFNHMKSLLTVKPKWIHVDNTAASIFHEGIKSDLVRFGIGIYGLNPSSNPDSPDLNPAF 244

Query: 233 --QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             +  ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G     
Sbjct: 245 KLEPALSFESELTHVKTIHKGDGVGYGSTFVADKDTIIGTVPVGYADGWIRKFQGF---- 300

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDV 346
                   K  +     PI+G+I MD  M  + + + +  G  + I   +      +   
Sbjct: 301 --------KVKVGDKYCPIVGRICMDQFMVKLPEKMPV--GTKVVIISNNPADPNNIKAA 350

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T +Y++   +G R  + Y
Sbjct: 351 ADYVDTIHYEVACLLGDRLPRVY 373


>gi|171319307|ref|ZP_02908420.1| alanine racemase [Burkholderia ambifaria MEX-5]
 gi|171095489|gb|EDT40456.1| alanine racemase [Burkholderia ambifaria MEX-5]
          Length = 356

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 154/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++   VVK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQVRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYAPEKYRAAWERARACPGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
               +  G   SLA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAENIAGA-RSLANSAAVLWHPDTHFDWVRPGIMLYGASPSGLSADIADTGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+ 
Sbjct: 286 VIVDGIRTHIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAGRVP 352


>gi|167578429|ref|ZP_02371303.1| alanine racemase [Burkholderia thailandensis TXDOH]
          Length = 374

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 158/367 (43%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + N+R  +VVK NAYG G E++ PAL  A      +  
Sbjct: 3   RPIVARIHPDAIAHNLAIVRKKAPNSRVWSVVKANAYGHGIERVYPAL--ADADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    QL   +   +      
Sbjct: 61  LDEAVRVRELGWTKPVLLLEGIFDAADIEIADRHRLTVAVHGDEQLKLLTSAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG       D    +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPSAFRDAWERAAAAPSIGRIALMMHFANA---DDGEIDWQMSVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG +    R+  I V A GYADGYP                G  
Sbjct: 236 SRIIGVQTLSPGETVGYGRRFAAEREMRIGVVACGYADGYPRHA-----------PSGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +  ++G+++MDM   D+T      VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 285 IAVDGVLTRVVGRVSMDMLTVDLTPCPHAGVGSTVELWGKQVRVDDVAEAAGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|34497370|ref|NP_901585.1| alanine racemase [Chromobacterium violaceum ATCC 12472]
 gi|34103226|gb|AAQ59589.1| alanine racemase [Chromobacterium violaceum ATCC 12472]
          Length = 356

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 164/369 (44%), Gaps = 19/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   I L  L++N+    A  G+ R  AV+K NAYG G  + A AL +     F V  
Sbjct: 2   RPLIATIRLDHLRHNYLQARAAHGD-RALAVLKANAYGHGAVRCAQALADI-ADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR       I +L G+   +E    D   L   ++S  QL+   +  +      
Sbjct: 60  LEEALELRAAGIANPILLLEGVFDAEELKAVDEHGLWMAVTSEEQLSMVEQ-SNPSRPFN 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L +D+G +R G   +      H             ++H A AD+P   +   QLE F 
Sbjct: 119 VWLMLDSGMHREGFLPENYHQAWHRLQASGKAGGITKMTHFARADEPEIPMTFAQLEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
             +      + S+A+S+GIL  P       R GI+LYG T       +   ++ V+   +
Sbjct: 179 AAVRGLPAGDESVANSAGILCHPRAQRNWGRVGIALYGVTPLPAGFGQGDALRPVMRFSS 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++  +R+   GE + YG      R + + + A GYADGYP   S            G   
Sbjct: 239 KVFGVRELGVGEPIGYGDNFVTERPTRVGLVACGYADGYPRRAS-----------SGSPA 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    ++G+++MDM   D+TD  ++ VG  ++++G  + +++VA  +GT  Y+ L  
Sbjct: 288 LVDGQRTRLIGRVSMDMLTVDLTDLPAVGVGSEVELWGDGVSVNEVAAHAGTIGYEPLCN 347

Query: 361 IGTRYAKFY 369
           +  R    Y
Sbjct: 348 V-KRARFVY 355


>gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
 gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
          Length = 815

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 161/371 (43%), Gaps = 22/371 (5%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   +L     +  A+VK NAYGLG  +++  L +  +    V   +E
Sbjct: 454 LEVNLNAILHNINYHKSLLKPGTKMMAMVKANAYGLGSFEVSEFLQHHHIDYLGVAYADE 513

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHPY 124
           GV+LR       I V+        + I + NL P I S   L  + + +        +P 
Sbjct: 514 GVELRKKGITTPIIVMNP-EQHSYQTIIEYNLEPEIYSFRVLELFYEAVQKSGYDKKYPI 572

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
            ++++TG +RLG    E LD    + + K  ++  + SHL+ +D P        QLE F 
Sbjct: 573 HIKLETGMHRLGFKDFE-LDQLSETLSHKNVKVQSMFSHLSSSDMPEEKEFTLKQLEVFE 631

Query: 184 TLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
              S+            + +S+GI    ++   + R GI + G +        +++VV+ 
Sbjct: 632 KNSSYLIEKLGYTSIRHILNSAGITSYKDHQHDMVRIGIGMLGESADPEIQKQLRSVVSF 691

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I  I     GE V Y  + K    + IA   +GYADG P  +              G
Sbjct: 692 KTVISQISTVENGESVGYSRRYKTDHPTRIATIPVGYADGIPRLIGNQV----------G 741

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              +   + PI+G I MDM M ++    +++ GD + +F     L + A    T  Y++L
Sbjct: 742 NVGVNKTLAPIVGNICMDMMMINVDHIPNVKEGDTVTVFNAHPSLKEFAGYCKTITYEVL 801

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 802 TSISPRVKRIY 812


>gi|51473254|ref|YP_067011.1| alanine racemase [Rickettsia typhi str. Wilmington]
 gi|81826340|sp|Q68XW3|ALR_RICTY RecName: Full=Alanine racemase
 gi|51459566|gb|AAU03529.1| alanine racemase [Rickettsia typhi str. Wilmington]
          Length = 402

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 125/406 (30%), Positives = 187/406 (46%), Gaps = 56/406 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L+A+KNN+  +  +   A   A VK N YG+G  +IA AL     Q FFV + EEG
Sbjct: 6   LEINLSAIKNNYRLLQDICTTALVGAAVKANGYGIGAMQIAKALIEENCQYFFVATSEEG 65

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           + LR        I VL G+       +   NL PV++++ Q+  + K  +      P  L
Sbjct: 66  INLRKALNNDITILVLNGVFTHDALELIQYNLTPVLNNLKQIEIWQKFSNLKEKILPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NR GL+  E     ++    K   L  IISHLA +++  +  N  QL RF+  +
Sbjct: 126 HFNTGLNRFGLNYDEIEQLINDRDLLKGLDLQYIISHLAASEEMDNPYNLAQLNRFKDYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---------------------- 224
            ++  ++ASLA+S GI LG +YHF L RPG +LYG                         
Sbjct: 186 EYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNSLIEVSYNLSYKEKFERNTPALA 245

Query: 225 -------------------KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
                               +  S+ +Q  VT +A II ++       + Y       RD
Sbjct: 246 TTVCINKCADVNTRLTYKVPLKGSYRLQNPVTLKAPIIHLQNLTLDSHIGYNMTFTTKRD 305

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
           S+IA   +GYADG+    S             G+ FI    VPI+G+++MD+   D+TD 
Sbjct: 306 SIIATLPLGYADGFSRNFSNQ-----------GEVFINSRSVPIVGRVSMDLINIDVTDL 354

Query: 326 LSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              EV  G  ++I G     D +A   GT  Y++L  +G+RY + Y
Sbjct: 355 PPSEVFLGQEVEIIGNYCTPDKIASIIGTVGYEVLTSLGSRYKRKY 400


>gi|188583600|ref|YP_001927045.1| alanine racemase [Methylobacterium populi BJ001]
 gi|179347098|gb|ACB82510.1| alanine racemase [Methylobacterium populi BJ001]
          Length = 363

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 190/364 (52%), Gaps = 14/364 (3%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RL +DL A+  NW ++ A +  A   AVVK +AYG G   +APAL+ AG + FFV  + 
Sbjct: 13  ARLTVDLAAIAANWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLS 72

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EG+  R   P+A I+VL G+ PG  +      L PV+    +        +   + P AL
Sbjct: 73  EGIAARKILPEAAIYVLNGLVPGHAEAFRAHGLRPVLG--DRGELLEWAAATDGAAPAAL 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTG NRLGL ++EAL    +    + G + L++SHL  A+ P   +N+ Q E F  + 
Sbjct: 131 HVDTGMNRLGLRVEEALALAGDPLIARAG-IDLVMSHLVSAERPDDPLNAGQAEAFARVR 189

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +  + ASLA+SSG  L       L RPG +L+GG  +  + +PM+ VV  EA I+ +R
Sbjct: 190 DAFPPLRASLANSSGTCLAARARHDLLRPGYALFGGNPEPGQRNPMRPVVRLEATILQLR 249

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE   Y G+ +      +A  ++GYADGYP + S             G   + G  
Sbjct: 250 AVEAGESCGYNGRWQAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGVP 298

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            PI+G I+MD+ + D+TD+     G    + G  + +D V  A+GT  Y++L  +G+RY 
Sbjct: 299 CPIVGLISMDLIILDVTDASEARRGATATLIGDSLDIDTVGQAAGTIGYEILTGLGSRYV 358

Query: 367 KFYT 370
           + Y 
Sbjct: 359 RSYV 362


>gi|322375697|ref|ZP_08050209.1| alanine racemase [Streptococcus sp. C300]
 gi|321279405|gb|EFX56446.1| alanine racemase [Streptococcus sp. C300]
          Length = 367

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIYLGAIRQNIQQMGAHIPEGTLKWAVVKANAYGHGAVAVAMAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I +L         +  + ++   ++ V  +       +   S 
Sbjct: 65  SNIDEAIELRQAGLSKKILILGVSEIEAIALAKEYDITLTVAGVEWIQALLARETDLSSL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +       +   ++  I +H A AD+ S    + QLE F
Sbjct: 125 TVHLKIDSGMGRIGFREASEAEQAQTMLQQHGARVEGIFTHFATADEESDAYFNAQLECF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + +++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KAILASMKEVPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLTPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + +     G +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKIYPL--GTKVTLIGTNGGKEITATQVATYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|300870894|ref|YP_003785765.1| alanine racemase [Brachyspira pilosicoli 95/1000]
 gi|300688593|gb|ADK31264.1| alanine racemase [Brachyspira pilosicoli 95/1000]
          Length = 368

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 189/372 (50%), Gaps = 23/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +IDL AL+NN   + +++GN +   +VK NAYG G   ++  L N  V    V +VEEG
Sbjct: 7   AEIDLKALQNNIKIIRSMTGNTKLLTIVKANAYGHGIVDMSKQLENLNVDALGVATVEEG 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQ 127
           VK+R    +  I VL+     + + +   +L P+IS+   L  Y + L +        ++
Sbjct: 67  VKIREAGVKIPIIVLFQHFKNEAEDVCRYDLTPIISNAECLDDYDRFLKNHNKKLKLHIK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLERFRT 184
           VDTG NR+G   ++ L   +   +    ++  I +H A +   DD S      Q++ F  
Sbjct: 127 VDTGLNRMGAKPKDVLSLANKILSYGTLEIEGINTHYAASDGFDDISKEFTENQIKIFTD 186

Query: 185 LISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           +++  K  GI+   A  A+S+ +L   N +F + R GI +YG T+K+      + ++  +
Sbjct: 187 VLNELKTNGIKINNAHTANSAALLYYKNAYFDMVRAGIVVYGYTEKL-YDFGFKPILNLK 245

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++IL RK    E VSYG   K  +D+ IAV  IGYADG    LS              +
Sbjct: 246 SKVILTRKIKKNETVSYGMTWKADKDTNIAVIPIGYADGLSRKLSN-----------NWE 294

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASGTTNYDL 357
             I G   PI+GKI MD+ M DI +  +I+  D + IFG D  +  + +A    + ++++
Sbjct: 295 VKINGKYYPIIGKICMDIIMADIGNEDNIKEEDEVLIFGDDERLNANTMAKKIESISHEV 354

Query: 358 LVRIGTRYAKFY 369
           LVRIG R  + Y
Sbjct: 355 LVRIGERVKRVY 366


>gi|256380541|ref|YP_003104201.1| alanine racemase [Actinosynnema mirum DSM 43827]
 gi|255924844|gb|ACU40355.1| alanine racemase [Actinosynnema mirum DSM 43827]
          Length = 388

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 99/375 (26%), Positives = 160/375 (42%), Gaps = 23/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               + IDL  L++N   + A +  A   AVVK + YG G  ++A     +G       S
Sbjct: 26  PRAEVVIDLDNLRHNTAYLAARAPGAELMAVVKADGYGHGAVEVARTALGSGATWLGSCS 85

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHP 123
           + E + LR     A +                  +   +S+   L    +     G    
Sbjct: 86  IPEALALRAGGITAPVLAWLDTPDTDFAPAIAEGVDLGLSTPRALESAAAAARRAGRRAR 145

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182
             L++DTG +R G    E   F   +      ++  I SHLACAD+P       Q ERF 
Sbjct: 146 VHLKIDTGLSRNGCPADEWEAFVELAAATPEVEVHAIWSHLACADEPGHPATDAQAERFD 205

Query: 183 ---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
              R  +      +  LA+S+ +L  P+ HF L RPGI+LYG     ++ H ++ V+T  
Sbjct: 206 DAYRAALRAGLDPKRHLANSAALLTRPDLHFDLVRPGIALYGLNPVPDE-HDLRPVMTFR 264

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + ++  ++  AGE VSYG       D+ +A+  +GYADG P  LS               
Sbjct: 265 SSVVRTKRIRAGESVSYGLTWTAKSDTSLALVPVGYADGVPRALSNRM-----------H 313

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
             + G   P++G++ MD  + D  D   I  GD + +FG  +       + A  +GT +Y
Sbjct: 314 VRLAGRRRPVVGRVCMDQVVVDCGDD-EIAEGDEVVLFGTGVDGGPTAREWADTTGTIDY 372

Query: 356 DLLVRI-GTRYAKFY 369
           +++  +   R  + Y
Sbjct: 373 EIVTGMHRPRVVRTY 387


>gi|221212666|ref|ZP_03585643.1| alanine racemase [Burkholderia multivorans CGD1]
 gi|221167765|gb|EEE00235.1| alanine racemase [Burkholderia multivorans CGD1]
          Length = 373

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 97/367 (26%), Positives = 158/367 (43%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +   +  +R  AVVK NAYG G E+I PAL  A      +  
Sbjct: 3   RPIVAHIRPDAVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPAL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P   +++    L   +    QL              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGIFEPADVELVERHRLTVAVHCDEQLDLLIAAKPQ-QPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            + +        ++ H A A          QL +F 
Sbjct: 120 IQLKMNSGMNRLGYRPDAFRAAWERAASAPSIGRITLMMHFANA---DEGEVDWQLAQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
              +   G E +L++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 AATAGIPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++   AGE V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAAGETVGYGRRFTAERPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGVLTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057]
 gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057]
          Length = 834

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 150/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +S    L   A+T  +VK +AYG G  +IA  L    V    V   +E
Sbjct: 476 LEVNLGAMIANLNSYRSRLKPEAKTVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 535

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G +LR     A I ++        K +FD  L P + S   L    K        + P  
Sbjct: 536 GSELRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLEALIKEAEKEGITNFPIH 594

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           ++VDTG +RLG + ++          +       + SH   +D P        Q+  F  
Sbjct: 595 VKVDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDAPQFDAFTRQQIVNFEK 654

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +S+GI   P   F + R GI LYG     N       V T  
Sbjct: 655 ASMELQNAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGVNPVDNSIMNN--VSTLR 712

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ IR     + V Y  +  L+R S IA   IGYADG    L                
Sbjct: 713 TTILQIRDVPGEDTVGYSRKGHLSRPSRIAAIPIGYADGLNRHLGNGH----------AY 762

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD ++IFG  + +  ++    T  Y++L 
Sbjct: 763 CLVNGQKAPYVGNICMDVCMIDVTDI-DCKEGDMVEIFGDHLPITVLSDILETIPYEILT 821

Query: 360 RIGTRYAKFY 369
            + TR  + Y
Sbjct: 822 SVSTRVKRVY 831


>gi|302553591|ref|ZP_07305933.1| alanine racemase [Streptomyces viridochromogenes DSM 40736]
 gi|302471209|gb|EFL34302.1| alanine racemase [Streptomyces viridochromogenes DSM 40736]
          Length = 390

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 107/383 (27%), Positives = 164/383 (42%), Gaps = 30/383 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R +IDL AL+ N  ++ A +  A   AVVK  AYG G  + A A   AG       + 
Sbjct: 16  RARAEIDLAALRANVRALRAHAPGAALMAVVKSEAYGHGAVQCARAAVAAGADWLGTATP 75

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124
           EE + LR      RI        G  +   + +L   +S +  L   +      G     
Sbjct: 76  EEALALRAAGLPGRIMCWLWTPGGPWREAIEADLDVSVSGMWALDEVTAAARLAGRPARV 135

Query: 125 ALQVDTGFNRLGLSL-QEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLE 180
            L+ DTG  R G     +  +    +   +   L +++ + SH ACAD+P     + Q+ 
Sbjct: 136 QLKADTGLGRNGCQPGDDWAELVREALRAEAEGLLRVTGLWSHFACADEPGHPSIAAQIG 195

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--- 232
            FR ++ H +  GI      +A+S   L  P  HF L R GI+LYG +       P    
Sbjct: 196 LFREMVGHAEQQGIRPEVRHIANSPATLTVPESHFDLVRTGIALYGISPSPELGTPADFG 255

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V+T  A + L++    G  VSYG Q     ++ + +  +GYADG P   S       
Sbjct: 256 LRPVMTLSASLALVKHVPGGHGVSYGHQYVTPGETTLGLVPLGYADGIPRHAS------- 308

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   ++G    I G++ MD  + D+      E G    +FGP    +   +D A
Sbjct: 309 ----SAGPVLVEGKWRTIAGRVAMDQFVVDLGGDEP-EAGAEAVLFGPGDRGEPTAEDWA 363

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
            A+GT  Y+++ RIGTR  + Y 
Sbjct: 364 QAAGTIAYEVVTRIGTRVPRVYV 386


>gi|228907651|ref|ZP_04071508.1| Alanine racemase [Bacillus thuringiensis IBL 200]
 gi|228852143|gb|EEM96940.1| Alanine racemase [Bacillus thuringiensis IBL 200]
          Length = 340

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 104/350 (29%), Positives = 154/350 (44%), Gaps = 24/350 (6%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
            A VK N YG G  +++    N+GV    V S+EE +KLR    QA I +L    P    
Sbjct: 1   MATVKANGYGHGAVEVSKKAINSGVDYLAVASLEEAIKLRKSDIQAPILMLGYTPPSAAN 60

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +   +L   I  +      SK     G      ++VDTG  RLGL  +EA DF H    
Sbjct: 61  HVVYWDLTQSIFDIEHAEALSKSGQILGKKAKVHVKVDTGMGRLGLQAEEANDFIHIVSR 120

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLGP 206
                L  + SH A AD+        Q  R++ L+   +  +       +A+S+  +  P
Sbjct: 121 MDGLYLEGVYSHFATADEADKRYAEKQKNRWKRLLEELEKRKVSIPLFHIANSAATIEMP 180

Query: 207 NYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
           +  + + R GIS+YG             ++  +  + ++I I+    G  VSYG      
Sbjct: 181 DMTYDMVRIGISMYGLYPSKEVNKTKVNLKQAIQLKTKVIYIQTLEKGYGVSYGATNIER 240

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
             ++IA   IGYADGY   LSG                I G + PI GKI MD  M D+T
Sbjct: 241 DKAIIATIPIGYADGYSRRLSGT-----------AYVLIHGQLAPIFGKICMDFCMIDVT 289

Query: 324 DSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D   + +GD + ++G      I LD+VA   GT +Y++   +G R  + Y
Sbjct: 290 DIKGVNIGDEVVVYGGQGDYFISLDEVASMLGTISYEVACNLGQRVPRIY 339


>gi|262282055|ref|ZP_06059824.1| alanine racemase [Streptococcus sp. 2_1_36FAA]
 gi|262262509|gb|EEY81206.1| alanine racemase [Streptococcus sp. 2_1_36FAA]
          Length = 368

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 153/381 (40%), Gaps = 27/381 (7%)

Query: 1   MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M +  +   +  +DL+A+  N   + A L  +    AVVK NAYG G   ++  + +  V
Sbjct: 1   MKTSIHRPSQALVDLSAIHFNIQQLKAHLPQDVEKWAVVKANAYGHGAVVVSSYIDDI-V 59

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V++++E ++LR      +I +L         +  +  +   ++S+  L        
Sbjct: 60  DGFCVSNIDEALELREGGLDKKILILGVSAIEVVPLAIEHKITLTVASLEWLDLLEASGL 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                   L+VD+G  R+G    ++L    N       Q+  I +H A AD+  +     
Sbjct: 120 SLQGLVVHLKVDSGMGRIGFRDSQSLQIAINRLQSAGVQVEGIFTHFATADEADASKFEE 179

Query: 178 QLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
           QL  F+ +++    +      ++S+  L   +      R G  +YG       +   + +
Sbjct: 180 QLACFKGILAELDALPPIIHASNSATSLWHADTVMNAVRLGDIIYGLNPSGSALELPYDI 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  + ++ +++  AG  V YG          I    +GYADG+   + G D     
Sbjct: 240 KPALSLVSELVHVKEVEAGADVGYGATYTADEGQFIGTIPLGYADGWTRDMQGFD----- 294

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    I G   PI+G+++MD     +     +  G  +   G      I   DVA 
Sbjct: 295 -------VLIDGQRCPIVGRVSMDQITVRLPKKYPL--GTPVVFIGKSGTESISATDVAE 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+++  I  R  + Y
Sbjct: 346 KRGTINYEVVCLISDRVPRIY 366


>gi|94994987|ref|YP_603085.1| alanine racemase [Streptococcus pyogenes MGAS10750]
 gi|166969432|sp|Q1J545|ALR_STRPF RecName: Full=Alanine racemase
 gi|94548495|gb|ABF38541.1| Alanine racemase [Streptococcus pyogenes MGAS10750]
          Length = 366

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 159/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S+        +T AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + K+     +   ++S+  L    +        
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELKLAITRQVTVTVASLEWLAMAKQEWPDLKGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++D+G  R+GL     +D           ++  I +H A AD+      + QL+ F
Sbjct: 125 KVHIKIDSGMGRIGLRSVTEVDNLIAGLKSMGAEVEGIFTHFATADEADDTKFNQQLQFF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + LI+  +        ++S+  +   +  F   R GI  YG       ++   P+Q  ++
Sbjct: 185 KKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPLQEALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG+ V YG      +   +    IGYADG+   + G            
Sbjct: 245 LESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    I+G+++MD     +  +  +  G  + + G     +I   D+A    T 
Sbjct: 295 --VLVDGQFCEIIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIPRIY 366


>gi|330992271|ref|ZP_08316219.1| Alanine racemase [Gluconacetobacter sp. SXCC-1]
 gi|329760470|gb|EGG76966.1| Alanine racemase [Gluconacetobacter sp. SXCC-1]
          Length = 382

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 138/365 (37%), Positives = 203/365 (55%), Gaps = 14/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I L A+  N+  + A +G A  AAVVK +AYGLG  ++AP L  AG + FFV  +EEG
Sbjct: 22  LEISLGAVAANYRLLRARTGQATCAAVVKADAYGLGAHQVAPVLEQAGAKVFFVAHLEEG 81

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           ++LR +  P A+IFVL+G  PG E+      L+PV++S+ Q+  +    S      P AL
Sbjct: 82  IRLRPHVSPTAQIFVLHGPMPGTERAFTHHALLPVLNSMEQIAGWRAHASKAQHALPAAL 141

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVDTG +R GLS  +              +  L++SHLACAD P+S  N++Q +R R + 
Sbjct: 142 QVDTGMSRFGLSDADVTALADTPALLDGIETRLVMSHLACADTPASPANALQRDRLRAMA 201

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +       +L++SSGI LGP+YHF L RPG +LYG     +  +P+Q  V  +ARI+  R
Sbjct: 202 ARLPAAPLALSASSGIFLGPDYHFDLVRPGAALYGLAPNADAPNPLQPTVRLQARIVQRR 261

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG+ V YG     +    IA   IGYADG+                 GG  ++  Y 
Sbjct: 262 TIKAGDGVGYGLTWHASGPRRIATLGIGYADGFLRQ----------GASNGGCAWLDSYR 311

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PILG+I+MD T  D+T      ++   ++ + GP   +DDVA A+GT  Y++L  +G+R
Sbjct: 312 LPILGRISMDSTTVDVTGVPESVLDQATHVDMIGPRRSVDDVAHAAGTIGYEVLTALGSR 371

Query: 365 YAKFY 369
           + + Y
Sbjct: 372 FHRVY 376


>gi|317490383|ref|ZP_07948867.1| alanine racemase [Eggerthella sp. 1_3_56FAA]
 gi|316910518|gb|EFV32143.1| alanine racemase [Eggerthella sp. 1_3_56FAA]
          Length = 467

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 101/387 (26%), Positives = 162/387 (41%), Gaps = 31/387 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
             +   +IDL A+++N  ++     N  R  AVVK + YG G  + A    N+G     V
Sbjct: 92  RRWSWTEIDLNAIRHNTSAVKQRIDNGVRLMAVVKADGYGHGAVRCAKTALNSGADYLGV 151

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVS 121
            +V E ++LR     A I VL         ++    ++P + +    + +     + GV 
Sbjct: 152 ATVNEAIELREALVNAPILVLSQPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADAYGVR 211

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            PY L V+TG NR+G+   E ++F       +   L    +H A AD   +    +Q++R
Sbjct: 212 APYHLAVNTGMNRIGVRHDEVVEFMGQVSFHRALDLVGTFTHFATADSAETLDFQIQVKR 271

Query: 182 FRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQT 234
           F   ++  +  G+       A+S+  +  P+  F + R GI++YG    I       +  
Sbjct: 272 FIEAVTALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHPSIVTRPMIDLHP 331

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  ARI  +R     E VSYG   +      I    +GYADG    LSG         
Sbjct: 332 AMSVHARITDVRTVPMSEGVSYGMNYRSPGSVKICTVPVGYADGLRRGLSGR-------- 383

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGPD----IKL 343
                  +KG     +G I MD  MF++          L   +GD + + G +    I L
Sbjct: 384 ---TDVILKGQRCHQVGNICMDQCMFEVDLRVYGSRRRLDPMIGDEVLLVGREGDSVITL 440

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
           DD+A   GT NY+L      R  + Y 
Sbjct: 441 DDMANTLGTINYELACGFSLRMPRVYV 467


>gi|197263989|ref|ZP_03164063.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242244|gb|EDY24864.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 356

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 164/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++ S  L++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+       +G  ++++G +IK+DDVA ASGT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLMPCPQAGIGTPVELWGKEIKVDDVASASGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|16799958|ref|NP_470226.1| hypothetical protein lin0885 [Listeria innocua Clip11262]
 gi|20137216|sp|Q92DC9|ALR_LISIN RecName: Full=Alanine racemase
 gi|16413335|emb|CAC96117.1| lin0885 [Listeria innocua Clip11262]
          Length = 368

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 150/379 (39%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L       AVVK NAYG G  + A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPDKVALWAVVKANAYGHGIIETAKIAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    +   I VL         +    N+   +     L       +    
Sbjct: 66  AILDEALALREAGFRNEFILVLGATRKEDANLAAKNNISVTVFREDWLDDL----TLEAP 121

Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+ S +EA              L  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRSREEAQRIETTIAIDHQMILEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+ ++S    +      A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQAILSSLTTRPTFVHTANSAASLLQPQIDFDAIRFGISMYGLTPSTEIKNSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  ++G   PI+G+I MD T+  +      + G  + I G D    +  DD A   
Sbjct: 294 ----HVLVEGERAPIIGRICMDQTIIKLPREF--QTGTKVTIIGSDHGNKVTADDAAEYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++   +  R  + Y
Sbjct: 348 GTINYEVTCLLTERIPRKY 366


>gi|310767806|gb|ADP12756.1| Alanine racemase, catabolic [Erwinia sp. Ejp617]
          Length = 356

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 97/368 (26%), Positives = 159/368 (43%), Gaps = 22/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   I+  AL+ N       +G AR  +VVK NAYG G + +  +L       F + 
Sbjct: 2   SRPIVATINRAALRQNLAIARYTAGGARLWSVVKANAYGHGIDHVWQSLNE--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G     +  I D   L   + S  Q+   ++        
Sbjct: 60  NLEEAILLRERGWKKPILLLEGFFHPDDLQILDRYRLTTSVHSNWQINALAQA-KLSAPI 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++++G NRLG   +          + +      +++H A A+       +  L+R 
Sbjct: 119 DIYLKMNSGMNRLGFQPERVHGVWQKLRSLENVGELTLMAHFADAETAEG--VAEPLKRI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SLA+S+  L  P  H+   RPGI LYG +            +Q V+T 
Sbjct: 177 EQAAEGLEC-PRSLANSAATLWHPQTHYDWVRPGIILYGASPSGQWQDIAGSGLQPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I +++  AG  V YG + +      I V A GYADGYP                G 
Sbjct: 236 TSEVIAVQQLAAGSGVGYGSRYRANCSQRIGVVACGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    I+G ++MDM   D+T      +G  ++++G +IK+DDVA ASGT  Y+L+
Sbjct: 285 PIRVDGEKTQIVGAVSMDMITVDLTPCPQAGIGSQVELWGDNIKIDDVASASGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALAPRVP 352


>gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4]
 gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4]
          Length = 821

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 148/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR       I ++        K +FD  L P + S   L    K        + P  
Sbjct: 523 GSDLRKAGITCSIMIMNP-ELTAFKAMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + +E  +       +       + SHL  +D          Q+E F  
Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +++GI   P   F + R GI LYG     N+      V T +
Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQIINN--VSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I +    E V Y  +  L RDS IA   IGYADG    L                
Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G I MD+ M D+TD    + GD   IFG D+ +  ++    T  Y++L 
Sbjct: 750 CLVNGQKASYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 809 SVSNRVKRVY 818


>gi|313624465|gb|EFR94470.1| alanine racemase [Listeria innocua FSL J1-023]
          Length = 368

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 148/379 (39%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L       AVVK NAYG G  + A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNRLPDKVALWAVVKANAYGHGIIETAKIAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    +   I VL         +    N+   +     L       +    
Sbjct: 66  AILDEALALREAGFRNEFILVLGATRKEDANLAAKNNISVTVFREDWLNDL----TLEAP 121

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLE 180
               L+VD+G  RLG+  +E       +        L  I +H A AD   +     QL 
Sbjct: 122 LRIHLKVDSGMGRLGIRSREEAQRIETTIALDHQMILEGIYTHFATADQLETSYFEQQLA 181

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F+ ++     +      A+S+  LL P   F   R GIS+YG T            ++ 
Sbjct: 182 KFQAILRSLTTRPTFVHTANSAASLLQPQIDFDAIRFGISMYGLTPSTEIKNSLPFELKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     ++ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 242 ALALYTEMVHVKELSPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGF-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  ++G   PI+G+I MD T+  +      + G  + I G D    +  DD A   
Sbjct: 294 ----HVLVEGERAPIIGRICMDQTIIKLPREF--QTGTKVTIIGSDHGNKVTADDAAEYL 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY++   +  R  + Y
Sbjct: 348 GTINYEVTCLLTERIPRKY 366


>gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 821

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 148/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR       I ++        K +FD  L P + S   L    K        + P  
Sbjct: 523 GSDLRKAGITCSIMIMNP-ELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + +E  +       +       + SHL  +D          Q+E F  
Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +++GI   P   F + R GI LYG     N+      V T +
Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQIINN--VSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I +    E V Y  +  L RDS IA   IGYADG    L                
Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G I MD+ M D+TD    + GD   IFG D+ +  ++    T  Y++L 
Sbjct: 750 CLVNGQKASYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 809 SVSNRVKRVY 818


>gi|322386107|ref|ZP_08059744.1| alanine racemase [Streptococcus cristatus ATCC 51100]
 gi|321269876|gb|EFX52799.1| alanine racemase [Streptococcus cristatus ATCC 51100]
          Length = 368

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 150/376 (39%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL+A+  N   + A    + +  AVVK NAYG G   ++  +    V  F V
Sbjct: 6   HRPTKAVIDLSAIAFNIEQIAAHIPQSVQKWAVVKANAYGHGAVPVSQHIQPL-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +     +   ++S+  L       +     
Sbjct: 65  SNIDEALELREAGIAKSILILGVSSLEAVPLAIQQQITLTVASLAWLEELLNQQADLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++D+G  R+G    +      +        +  I +H A AD+  +     QL RF
Sbjct: 125 TVHIKIDSGMGRIGFRDSQEAQQAISRLQAAGAVVEGIFTHFATADELDTSHFVAQLNRF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + ++S    +      ++S+  L          R G  +YG       ++  + ++  ++
Sbjct: 185 KEILSELAFLPPVVHASNSATTLWHSETIMNAVRLGDIIYGLNPSGRVLDLPYEVKPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ +++  AG  V YG         +I    +GYADG+   + G D          
Sbjct: 245 LESALVHVKEIQAGAHVGYGATYTSDSQQIIGTIPLGYADGWTRDMQGFD---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               I G   PI+G+++MD     +     +  G  + + G      I   DVA   GT 
Sbjct: 295 --VLIDGQRCPIVGRVSMDQITVRLPRVYPL--GTQVVLIGQSGAELITATDVAEKRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 351 NYEVVCLISDRVPREY 366


>gi|190891117|ref|YP_001977659.1| alanine racemase [Rhizobium etli CIAT 652]
 gi|190696396|gb|ACE90481.1| alanine racemase protein [Rhizobium etli CIAT 652]
          Length = 333

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 160/329 (48%), Positives = 219/329 (66%), Gaps = 2/329 (0%)

Query: 44  GCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103
           G E    ALY AG +DFFV +V+EGV LRLY P+ARIFVL GI PG E+  FD +L+PVI
Sbjct: 2   GIEDAGEALYTAGARDFFVATVDEGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPVI 61

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
           SS  Q  F+  +++    +P AL VDTGFNRLGL + +A+    +          L++SH
Sbjct: 62  SSDEQFAFWMAVLADYGDYPCALHVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSH 121

Query: 164 LACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT 223
           LAC DDPS  +N  QLE FR + + Y+G+++SLA+S+GI LG +YHF+LTRPGI+LYGG 
Sbjct: 122 LACGDDPSHAMNRQQLESFRRVTAAYEGVDSSLAASAGIFLGEDYHFELTRPGIALYGGE 181

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                ++PM+ V TAEAR+I +R   AGE VSYG   +L RDS +A+ + GYADGY  + 
Sbjct: 182 VVCGMANPMRPVATAEARVIQVRTVKAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQ 241

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDI 341
           S         V  GG+GFI G+ VP+ G+ITMD+T+FD+TD     +  GDY+++FG ++
Sbjct: 242 SSGGVPLRQVVPQGGQGFIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKNV 301

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            LDDVA A+GT  Y++L  +G R+ + Y 
Sbjct: 302 ALDDVARAAGTIGYEILTSMGLRHERRYV 330


>gi|183981139|ref|YP_001849430.1| alanine racemase, Alr [Mycobacterium marinum M]
 gi|183174465|gb|ACC39575.1| alanine racemase, Alr [Mycobacterium marinum M]
          Length = 388

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 164/379 (43%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+ +N   +   +G+A+  AVVK + YG G   +A     AG  +  V SV
Sbjct: 13  LAEAVVDLGAIAHNVRLLRERAGSAQVMAVVKADGYGHGATAVARTALAAGAVELGVASV 72

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR     A +                 ++   ISS+ Q           G +   
Sbjct: 73  DEALTLRADGITAPVLAWLHAPGMDFGPALAADVQIAISSIRQLDEVLDAARRTGTTATV 132

Query: 125 ALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            +++DTG NR G++     E +     +  +   +L  +++H+  AD P   +N +Q +R
Sbjct: 133 TVKIDTGLNRNGVAPALYPEMVTRLRQAVAEDAIRLRGLMTHMVHADAPEKPINDIQSQR 192

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTV 235
           F+ +  H +  G+    A L++SS  +  P+    L RPGI++YG +         +   
Sbjct: 193 FKQMFDHARDQGVRFEVAHLSNSSATMARPDLTLDLVRPGIAVYGLSPVPRLGDMGLVPA 252

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + L++   AGE VSYG       D+ +A+  IGYADG   +L G          
Sbjct: 253 MTVKCAVALVKSVSAGEGVSYGHTWIAPHDTNVALLPIGYADGVFRSLGGRL-------- 304

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350
              +  I G   P +G++ MD  + D+      +  GD   +FGP    +    D A   
Sbjct: 305 ---EVLINGKRRPGVGRVCMDQFLVDLGPGPLDVAEGDEAILFGPGTRGEPTAQDWADLV 361

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+++     R  + Y
Sbjct: 362 GTIHYEVVTSPRGRITRVY 380


>gi|306826747|ref|ZP_07460049.1| alanine racemase [Streptococcus pyogenes ATCC 10782]
 gi|304431036|gb|EFM34043.1| alanine racemase [Streptococcus pyogenes ATCC 10782]
          Length = 366

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 161/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S+        +T AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALL-PQVDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + ++     +   I+S+  +             
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKKECQGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+GL   + ++   +S  +    +  I +H A AD+      + QL+ F
Sbjct: 125 KVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQFF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + LI+  +        ++S+  +   +  F   R GI  YG       ++   P+Q  ++
Sbjct: 185 KKLIAGLEDKPRLVHTSNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPLQEALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG+ V YG      +   +    IGYADG+   + G            
Sbjct: 245 LESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    ++G+++MD     +  +  +  G  + + G     +I   D+A    T 
Sbjct: 295 --VLVDGQFCEMIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIPRIY 366


>gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
 gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
          Length = 821

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 148/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR       I ++        K +FD  L P + S   L    K        + P  
Sbjct: 523 GSDLRKAGITCSIMIMNP-ELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + +E  +       +       + SHL  +D          Q+E F  
Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +++GI   P   F + R GI LYG     N+      V T +
Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQIINN--VSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I +    E V Y  +  L RDS IA   IGYADG    L                
Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G I MD+ M D+TD    + GD   IFG D+ +  ++    T  Y++L 
Sbjct: 750 CLVNGQKASYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 809 SVSNRVKRVY 818


>gi|332994605|gb|AEF04660.1| alanine racemase [Alteromonas sp. SN2]
          Length = 355

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 169/366 (46%), Gaps = 17/366 (4%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +  I   A+ +N+  +  L+  +R+ AVVK +AYG G   ++  L +     F V 
Sbjct: 2   SRQTQAIIHADAILSNFKLLAELAPTSRSMAVVKADAYGHGAVNVSRILQHVS-PRFAVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + LR     A I VL G H  +E  +      I V+ +  QL +           
Sbjct: 61  IIEEAIALREAGITAPIVVLEGAHQAKECAMAASHGCILVMHNQAQLEWMLACPEDRRPT 120

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+ D+G +RLG  L           +  + Q +++++HLACADD S+     QL  F
Sbjct: 121 -IWLKADSGMHRLGFVLNTLPSIVKQYASL-ITQDTVLVTHLACADDTSNDFTQKQLSAF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
             + +    +  S+A+S   +  P       R GI++YGG      +  +   +T  + I
Sbjct: 179 LQIATQLA-LPVSIANSPATIEWPQSRGDWNRLGIAVYGGQPNT-ANVALAPTMTLRSSI 236

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R    GE V YG      +DS IA   IGYADGYP                G    +
Sbjct: 237 IALRDVPKGESVGYGQNWVAQKDSRIATVGIGYADGYPRHCPN-----------GTPVAV 285

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    + G+++MDM   D+T   ++ +GD ++++G ++ +++VA A+ + +Y+LL R+ 
Sbjct: 286 NGERAGLAGRVSMDMITIDVTHISNVNIGDRVELWGENVPINEVAEAADSIDYELLTRVS 345

Query: 363 TRYAKF 368
            R  + 
Sbjct: 346 ARVPRI 351


>gi|154686685|ref|YP_001421846.1| YncD [Bacillus amyloliquefaciens FZB42]
 gi|154352536|gb|ABS74615.1| YncD [Bacillus amyloliquefaciens FZB42]
          Length = 393

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 164/384 (42%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + +++DL A+K N  ++     N  +  AVVK NAYG G  ++A     +G  +  V 
Sbjct: 6   REVWIEVDLDAIKKNVRAIRRHIPNTSKIMAVVKANAYGHGSVEVARQALESGASELAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GV 120
           SVEEG+ LR     A I VL        K     N+      V  +   ++++       
Sbjct: 66  SVEEGIVLRRAGITAPILVLGFTALSCVKKSAVWNITLSAFQVSWIKKANRILEKEADSK 125

Query: 121 SHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+  +E  L       +        I +H + AD+P + +  +Q 
Sbjct: 126 RLSIHINVDTGMGRLGVRTEEDLLAVVKALKSSTYLSWDGIFTHFSTADEPDTELTMLQH 185

Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230
           E+F + +   K          + +++  +  P +   + R GI LYG     +       
Sbjct: 186 EKFISFLRFLKNQDITLPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSASIKELNLV 245

Query: 231 PMQTVVTAEARIILIRK-ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            +   ++ +ARI  ++        VSYG         +IA   IGY DGY   LS     
Sbjct: 246 DLTPALSLKARIAYVKAMVTDPRTVSYGATYIAEPGEIIATIPIGYGDGYSRALSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  VP+ G++TMDM M  + ++   + G+ + I+G     +I +D+
Sbjct: 303 --------GFILHRGRRVPVAGRVTMDMIMVSLGENEG-KQGEEVVIYGKQQGAEISVDE 353

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT +Y++L  +  R  +FY
Sbjct: 354 IAEMLGTISYEVLSVLSRRVPRFY 377


>gi|157150127|ref|YP_001449734.1| alanine racemase [Streptococcus gordonii str. Challis substr. CH1]
 gi|189027393|sp|A8AVC4|ALR_STRGC RecName: Full=Alanine racemase
 gi|157074921|gb|ABV09604.1| alanine racemase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 368

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 153/381 (40%), Gaps = 27/381 (7%)

Query: 1   MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M +  +   +  +DL+A+  N   + A L  +    AVVK NAYG G   ++  + +  V
Sbjct: 1   MKTSIHRPSQALVDLSAIHFNIEQLKAHLPQDVEKWAVVKANAYGHGAVAVSSYIDDI-V 59

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V++++E ++LR      +I +L         +     +   ++S+  L        
Sbjct: 60  DGFCVSNIDEALELREGGLDKKILILGVSAIEVVPLAIQNKITLTVASLEWLDLLEASSL 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                   L+VD+G  R+G   ++ L    N       Q+  I +H A AD+  +     
Sbjct: 120 SLQGLVVHLKVDSGMGRIGFRDRQPLQEAINRLQVAGVQVEGIFTHFATADEADASKFEE 179

Query: 178 QLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
           QL  F+ +++    +      ++S+  L   +      R G  +YG       +   + +
Sbjct: 180 QLACFKGILAELDALPPIIHASNSATSLWHTDTVMNAVRLGDIIYGLNPSGSVLELPYDI 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  + ++ +++  AG  V YG          I    +GYADG+   + G D     
Sbjct: 240 KPALSLVSELVHVKEVEAGADVGYGATYTADEGQFIGTIPLGYADGWTRDMQGFD----- 294

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    I G   PI+G+I+MD     + +   +  G  +   G      I   DVA 
Sbjct: 295 -------VLIDGQRCPIVGRISMDQITVRLPEKYPL--GTPVVFIGKSGTESISATDVAE 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY+++  I  R  + Y
Sbjct: 346 KRGTINYEVVCLISDRVPRIY 366


>gi|146340278|ref|YP_001205326.1| putative alanine racemase (alr) [Bradyrhizobium sp. ORS278]
 gi|146193084|emb|CAL77095.1| putative alanine racemase (alr) [Bradyrhizobium sp. ORS278]
          Length = 393

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 11/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  A  A V+K +AYG G  ++A  L  AG + FFV ++ E 
Sbjct: 27  LTIDLDALAANWRKLEKTAVPAECAGVIKADAYGCGIPQVARTLAAAGCKTFFVATLGEA 86

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
              R   P+ A ++VL G            N  PVI  + +L  +       G     A+
Sbjct: 87  KIARSALPEPAALYVLDGFFQNTGDDYAAINCRPVIGDLNELAEWDMFCRRTGWKGGAAI 146

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTG NRLGL+  +A        +   G ++L++SHLA A+  +S  N+ QL  FR + 
Sbjct: 147 HVDTGMNRLGLTPIDAQGMIPRIQSGDHG-ITLVMSHLASAEQVNSPANARQLATFREVA 205

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           S + G+ A+LA+SSGI LG ++HF + RPG +LYG        +PMQ V   +ARI+ +R
Sbjct: 206 SVFTGVPAALAASSGIFLGASFHFDMVRPGAALYGVNPTPEADNPMQPVAEIKARIVQLR 265

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G+ V YGG     R + IA+ + GYADGY    S  D         G    + G  
Sbjct: 266 DLARGDAVGYGGTWTARRPTKIAILSAGYADGYFRAASSNDGTR------GADVIVAGQR 319

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            P+ G+++MD+   D+TD        G +  + G  I +D++A   GT  Y++L  +G R
Sbjct: 320 CPVAGRVSMDLIAVDVTDLPPKAARRGHFATLLGEGISVDELAHHFGTIGYEVLTNLGRR 379

Query: 365 YAKFY 369
           Y + Y
Sbjct: 380 YHRIY 384


>gi|319780958|ref|YP_004140434.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166846|gb|ADV10384.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 379

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 180/366 (49%), Gaps = 17/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A++ N+  + A  G+   A V+K + YGLG  ++  AL   G   FFV  + EG
Sbjct: 25  LTIDLGAIRENYRRLKARLGDVACAGVLKADGYGLGAGQVGAALLREGCDIFFVALLGEG 84

Query: 69  VKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126
           V LR        IFVL GI PG E      NL  VI+S  Q   + S     G   P A+
Sbjct: 85  VALRRSLGAGPAIFVLNGIPPGAETDAVAANLCAVINSPEQLAAWRSAARRAGRKLPAAV 144

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVD+G +RLG++ ++      +        +  ++SHLACAD+P    N  Q   F  L 
Sbjct: 145 QVDSGMSRLGMAPRDVDRIAADPQAFDGIDIRYVMSHLACADEPEHPANEKQRSVFERLR 204

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +      ASL +SSGI LGP++H+ L RPG +LYG      KS+PM  VV  +A++   R
Sbjct: 205 AMLPKAPASLTNSSGIFLGPSFHYDLARPGAALYGINPTPPKSNPMLPVVRLQAKVAQTR 264

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YG          +A  + GYADG+    +                + +G  
Sbjct: 265 SVEKGAGVGYGHSYHAQGPLRLATISFGYADGWQRRAASA-------------AWFEGVR 311

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +P +G+++MD  + DI+   +  +  GD +++ GP   +DD A  +GT  Y++L  +G R
Sbjct: 312 LPFVGRVSMDSIILDISALPAGRLREGDLVELLGPSQSVDDAAGHAGTIGYEILTSLGPR 371

Query: 365 YAKFYT 370
           + + Y 
Sbjct: 372 FHRRYV 377


>gi|255067061|ref|ZP_05318916.1| alanine racemase [Neisseria sicca ATCC 29256]
 gi|255048657|gb|EET44121.1| alanine racemase [Neisseria sicca ATCC 29256]
          Length = 352

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 163/367 (44%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L++N+ ++  + G  +  AV+K +AYG G  + A AL N     F V +
Sbjct: 2   RPLNARIRLDNLRHNYQTLKQIHGG-KMLAVIKADAYGHGAVRCAHALSNL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           V+E V+LR       I +L G+    E  I D  NL P + S  QL              
Sbjct: 60  VDEAVELRESGITNPIVLLEGVFEATEYAIVDKYNLWPGVGSQWQLEALIAH-HWQNPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G                K     +  SH ACAD+P + +  +QLE F 
Sbjct: 119 VWLKMDSGMHRAGFFPHNYTSAYTALKQCKHVDSIVKFSHFACADEPDNGMTEMQLEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+   +R+ 
Sbjct: 179 LACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVMRLTSRVF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP   S                 I+
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAIE 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    I+G+++MDM   ++ D+    +G  ++++G  + +++VA A+G   Y++   +  
Sbjct: 287 GKRSRIIGRVSMDMITVEL-DASQEGLGAEVELWGDVVNINEVAEAAGMIPYEIFCNV-K 344

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 345 RAKFTYS 351


>gi|283471286|emb|CAQ50497.1| alanine racemase [Staphylococcus aureus subsp. aureus ST398]
          Length = 382

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 166/385 (43%), Gaps = 36/385 (9%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 2   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121

Query: 118 CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                   +++DTG  RLG+    + QE ++        +      + +H ACAD+P   
Sbjct: 122 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQ---YEQLVFEGVFTHFACADEPGD- 177

Query: 174 VNSVQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NK 228
           + + Q  RF+ +++   K       +S+G LL         RPGISLYG           
Sbjct: 178 MTTEQYHRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKV 237

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   + G   
Sbjct: 238 KVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSF- 296

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G+   ++G++ MD T+  + D   ++ GD + +          ++
Sbjct: 297 -----------VNVIGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVE 343

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
             A    T NY++L  +  R  + Y
Sbjct: 344 VAAEKQHTINYEVLCNLSRRLPRIY 368


>gi|86357070|ref|YP_468962.1| alanine racemase protein [Rhizobium etli CFN 42]
 gi|86281172|gb|ABC90235.1| alanine racemase protein [Rhizobium etli CFN 42]
          Length = 333

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 161/329 (48%), Positives = 218/329 (66%), Gaps = 2/329 (0%)

Query: 44  GCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103
           G E    ALY AG +DFFV +V+EGV LRLY P+ARIFVL GI PG E+  FD +L+PVI
Sbjct: 2   GIEDAGEALYLAGARDFFVATVDEGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPVI 61

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
           SS  Q  F+  +++    +P AL VDTGFNRLGL + +A+    +          L++SH
Sbjct: 62  SSDEQFAFWMAVLADYGDYPCALHVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSH 121

Query: 164 LACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT 223
           LAC DDPS  +N  QLE FR + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG 
Sbjct: 122 LACGDDPSHLMNRQQLESFRKVTAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGE 181

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                ++PM+ V T EARII +R   AGE VSYG   +L RDS +A+ + GYADGY  + 
Sbjct: 182 AVCGVTNPMRPVATTEARIIQVRTVKAGETVSYGRALQLHRDSRLAIVSAGYADGYMRSQ 241

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDI 341
           S        +V  GG+GFI G+ VP+ G+ITMD+T+FD+TD     +  GDY+++FG ++
Sbjct: 242 SSGGVPLRQAVPQGGQGFIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKNM 301

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            LDDVA A+GT  Y++L  +G R+ + Y 
Sbjct: 302 ALDDVARAAGTIGYEILTSMGLRHERRYV 330


>gi|325833467|ref|ZP_08165916.1| alanine racemase [Eggerthella sp. HGA1]
 gi|325485391|gb|EGC87860.1| alanine racemase [Eggerthella sp. HGA1]
          Length = 467

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 100/387 (25%), Positives = 161/387 (41%), Gaps = 31/387 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
             +   +IDL A+++N  ++     N  R  AVVK + YG G  + A    N+G     V
Sbjct: 92  RRWSWTEIDLNAIRHNTSAVKQRIDNGVRLMAVVKADGYGHGAVRCAKTALNSGADYLGV 151

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVS 121
            +V E ++LR     A I VL         ++    ++P + +    + +     + GV 
Sbjct: 152 ATVNEAIELREALVNAPILVLSQPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADAYGVR 211

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            PY L V+TG NR+G+   E ++F       +   L    +H A AD   +    +Q++R
Sbjct: 212 APYHLAVNTGMNRIGVRHDEVVEFMGQVSFHRALDLVGTFTHFATADSAETLDFQIQVKR 271

Query: 182 FRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234
           F   ++  +  G+       A+S+  +  P+  F + R GI++YG            +  
Sbjct: 272 FIEAVTALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHPSGVTRPMIDLHP 331

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  ARI  +R     E VSYG   +      I    +GYADG    LSG         
Sbjct: 332 AMSVHARITDVRTVPMSEGVSYGMNYRSPGSVKICTVPVGYADGLRRGLSGR-------- 383

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGPD----IKL 343
                  +KG     +G I MD  MF++          L   +GD + + G +    I L
Sbjct: 384 ---TDVILKGQRCHQVGNICMDQCMFEVDLRVYGSRRRLDPMIGDEVLLVGREGDSVITL 440

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
           DD+A   GT NY+L      R  + Y 
Sbjct: 441 DDMANTLGTINYELACGFSLRMPRVYV 467


>gi|197247858|ref|YP_002146222.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211561|gb|ACH48958.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 356

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGAILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEAS--LASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++ S  L++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCSYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|325845425|ref|ZP_08168718.1| alanine racemase [Turicibacter sp. HGF1]
 gi|325488531|gb|EGC90947.1| alanine racemase [Turicibacter sp. HGF1]
          Length = 380

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 156/376 (41%), Gaps = 23/376 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M        ++DL A+  N   +  L  N +  AVVK N YG G  +++     AGV + 
Sbjct: 1   MSFYRDTWAEVDLDAIVYNVQQIKKLHPNKKIFAVVKANGYGHGDVEVSRVALLAGVTNL 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V+ ++E + LR    +A I VL         I    N+         ++   +L     
Sbjct: 61  AVSGLDEALGLRKAGIEAPILVLGMTRLKDVSIAAQYNIALTAHDECWISKLVEL-PLET 119

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L++D+G +RLGL+ +E +  T          +L  + +H+A A D  +     Q+
Sbjct: 120 PVKVHLKIDSGMHRLGLTTKEKVKETFELLKAAPKVELEGVFTHMATA-DCDADYLEYQI 178

Query: 180 ERFRTLIS--HYKGIEASLASSSGILLGPNYHFQ-LTRPGISLYGGTDK---INKSHPMQ 233
           + F +LI       I+     ++  LL   + F    R G+ LYG       I     ++
Sbjct: 179 KTFESLIEDLDLSSIKYVHIENTATLLQREFEFDHAIRLGLGLYGINPDAKFIPLEFDLK 238

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   ++I  +++   G+ V YG       D  I V  IGYADG+     G +      
Sbjct: 239 PALKLYSKITQVKRINKGDKVGYGATYTAENDEWIGVVPIGYADGWIRAHQGRN------ 292

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
                   ++G    I+G++ MD  M  +     +E+G  + + G  + ++ VA   GT 
Sbjct: 293 ------VIVEGKECEIIGRVCMDQLMIRLPH--EVEMGTMVTLIGDGMPVERVADEIGTI 344

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++L  +  R  + Y
Sbjct: 345 SYEILCMLSDRVPRVY 360


>gi|161723116|ref|YP_439909.2| alanine racemase [Burkholderia thailandensis E264]
 gi|167616568|ref|ZP_02385199.1| alanine racemase [Burkholderia thailandensis Bt4]
 gi|257143071|ref|ZP_05591333.1| alanine racemase [Burkholderia thailandensis E264]
          Length = 374

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 158/367 (43%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + N+R  +VVK NAYG G E++ PAL  A      +  
Sbjct: 3   RPIVARIHPDAIAHNLAIVRQKAPNSRVWSVVKANAYGHGIERVYPAL--ADADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    QL   +   +      
Sbjct: 61  LDEAVRVRALGWTKPVLLLEGIFDAADIEIADRHRLTVAVHGDEQLKLLTSAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG       D    +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPSAFRDAWERAAAAPSIGRIALMMHFANA---DDGEIDWQMSVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG +    R+  I V A GYADGYP                G  
Sbjct: 236 SRIIGVQTLSPGETVGYGRRFAAEREMRIGVVACGYADGYPRHA-----------PSGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +  ++G+++MDM   D+T      VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 285 IAVDGVLTRVVGRVSMDMLTVDLTPCPHAGVGSTVELWGKQVRVDDVAEAAGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|83651967|gb|ABC36031.1| alanine racemase [Burkholderia thailandensis E264]
          Length = 386

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 158/367 (43%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + N+R  +VVK NAYG G E++ PAL  A      +  
Sbjct: 15  RPIVARIHPDAIAHNLAIVRQKAPNSRVWSVVKANAYGHGIERVYPAL--ADADGIALLD 72

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    QL   +   +      
Sbjct: 73  LDEAVRVRALGWTKPVLLLEGIFDAADIEIADRHRLTVAVHGDEQLKLLTSAKTT-RPID 131

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG       D    +          ++ H A A          Q+  F 
Sbjct: 132 IQLKMNSGMNRLGYRPSAFRDAWERAAAAPSIGRIALMMHFANA---DDGEIDWQMSVFD 188

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 189 AATDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTLT 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG +    R+  I V A GYADGYP                G  
Sbjct: 248 SRIIGVQTLSPGETVGYGRRFAAEREMRIGVVACGYADGYPRHA-----------PSGTP 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +  ++G+++MDM   D+T      VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 297 IAVDGVLTRVVGRVSMDMLTVDLTPCPHAGVGSTVELWGKQVRVDDVAEAAGTIGYELMC 356

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 357 ALARRVP 363


>gi|55821698|ref|YP_140140.1| alanine racemase [Streptococcus thermophilus LMG 18311]
 gi|81820398|sp|Q5M2S7|ALR_STRT2 RecName: Full=Alanine racemase
 gi|55737683|gb|AAV61325.1| alanine racemase [Streptococcus thermophilus LMG 18311]
          Length = 367

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 157/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     K+DL+A+  N   + +      +T AVVK NAYG G  ++A  +    V  F V
Sbjct: 6   HRPTLAKVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHVSKQ-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  + P    +    N+   ++S+  LT   K        
Sbjct: 65  SNLDEALELRQAGIEQPILILGVVLPDGVPLAIQENISLTVASLEWLTLAQKQGLDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+G+   +  D            +  I +H A AD+        QL  F
Sbjct: 125 TCHIKVDSGMGRIGVRNLKDADNLIAGLKALGADVEGIFTHFATADEADDSKFKRQLSFF 184

Query: 183 RTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             L+ +   +      ++S+  +      F   R G+ +YG       +   + +Q  ++
Sbjct: 185 TDLVDNLTDRPRLVHASNSATSIWHAATVFNTVRLGVVIYGLNPSGSVLELPYNIQPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E  +I ++   AG+ V YG     T + +I    IGYADG+   L G            
Sbjct: 245 LETALIHVKTLPAGQDVGYGATYTTTDEEVIGTLPIGYADGWTRDLQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G + PI+G+++MD     +     +  G  + + G +    I   +VA   GT 
Sbjct: 294 -HVIVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGVSITATEVAEKRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRVPRSY 366


>gi|319407017|emb|CBI80654.1| Alanine racemase [Bartonella sp. 1-1C]
          Length = 373

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 193/365 (52%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID+ A+  N+ ++         +AVVK +AYGLG EKIAPALY AG + FF+  ++E 
Sbjct: 19  ATIDIGAIVANYKTLVQRVAPIECSAVVKADAYGLGAEKIAPALYQAGCRTFFIAHLKEA 78

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++L+   P    + +L GI P  E+ +  T ++PV++S  ++  +       G   P  +
Sbjct: 79  LQLKAILPNNVTLILLNGIPPTAEEFVTQTGIVPVLNSRNEIENWQMHCQKNGKKFPAII 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E      N    ++  +  IISHLA  D+ +   N  Q    +T +
Sbjct: 139 QIDTNMNRLGLDQEELQWLIQNPSLFEIADIKYIISHLANGDNATHASNCEQKNAMKTAL 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     +ASLA+S GI LGP+++F L RPGI LYG          ++ V+  +A++I  R
Sbjct: 199 AQLPTCKASLANSGGIFLGPDFYFDLVRPGIGLYGIDPHQQHPTSLKPVLKLKAQVIQSR 258

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YGG     + S++   +IGYADG+   LS             G  +   + 
Sbjct: 259 CTEAGSPVGYGGSFITQKPSILTTISIGYADGWLRNLSN-----------KGFVYFNQHK 307

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+I+MD  + D T+      + GD++++ G    +++VA  +GT  Y++L  +G+R
Sbjct: 308 LPIIGQISMDSIIVDATNLQHEKPKRGDWVELIGKHQTIENVAADAGTIPYEILTSLGSR 367

Query: 365 YAKFY 369
           Y + Y
Sbjct: 368 YKRIY 372


>gi|195977514|ref|YP_002122758.1| alanine racemase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|226711061|sp|B4U178|ALR_STREM RecName: Full=Alanine racemase
 gi|195974219|gb|ACG61745.1| alanine racemase Alr [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 366

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 161/377 (42%), Gaps = 27/377 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     ++DL A++ N   +        +T AVVK NAYG G   ++ A+ +  V  + V
Sbjct: 6   HRPTVARVDLEAIQANIDKIQRHIPKKVKTYAVVKANAYGHGAVAVSKAVEDQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  I   + ++     L   ++S+  L    K        
Sbjct: 65  SNLDEALELRQAGIDKEILILGVILASELQLAIKHQLTITVASLEWLELAKKESVDFSQL 124

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++VD+G  R+G+ SL EA        +  + QL  I +H A AD+    +   QL  
Sbjct: 125 HVHVKVDSGMGRIGVRSLAEANQLISILSDMGV-QLDGIFTHFATADESDHAMFDKQLTF 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVV 236
           F+ L+       A    ++S+  L      F   R GI +YG     N      P++  +
Sbjct: 184 FKQLVEQLDKRPALVHASNSATSLWHSETIFNAIRLGIVIYGLNPSGNSLSLPCPLKEAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+R++ +++  AG+ V YG          +    IGYADG+   + G           
Sbjct: 244 SLESRLVHVKQIQAGDSVGYGASYVAAESEYVGTLPIGYADGWTRNMQGF---------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             K  ++G    I+G+++MD     +  +    +G  + + G      I   DVA   GT
Sbjct: 294 --KVLVEGEFCDIIGRVSMDQLTIRLLQAYP--IGTKVTLIGQQGKQVITATDVADYRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++L  +  R  + Y
Sbjct: 350 INYEVLCLLSDRIPREY 366


>gi|125717409|ref|YP_001034542.1| alanine racemase [Streptococcus sanguinis SK36]
 gi|125497326|gb|ABN43992.1| Alanine racemase, putative [Streptococcus sanguinis SK36]
          Length = 369

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A L       AVVK NAYG G  +++    +  V  F V
Sbjct: 7   HRPSKAVIDLAAIAFNIRQLSAHLPQKTEKWAVVKANAYGHGAIEVSKH-IDPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   +    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEVDHYKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGTVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  +  +  G  + + G      I + DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQAYPL--GTPVVLIGNSGAETITVTDVAEKLGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|298369328|ref|ZP_06980646.1| alanine racemase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283331|gb|EFI24818.1| alanine racemase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 352

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 163/367 (44%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L++N+ ++  + G  +  AV+K +AYG G  + A AL +     F V +
Sbjct: 2   RPLNARIRLDNLRHNYQTLKQIHGG-KMLAVIKADAYGHGAVRCAHALSDL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           V+E V+LR       I +L G+    E   +   NL P + S  QL       +      
Sbjct: 60  VDEAVELRESGITNPIVLLEGVFEASEYATVDKYNLWPGVGSQWQLEALIAH-NWQTPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G                K     +  SH ACAD+P + +  +QLE F 
Sbjct: 119 VWLKMDSGMHRAGFFPHNYTSAYTALKQCKHVDGIVKFSHFACADEPDNGMTEMQLEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+   +R+ 
Sbjct: 179 LACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVMRLTSRVF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       V YG     ++ + + + A GYADGYP   S                 ++
Sbjct: 238 GERVLQPHSPVGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAVE 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    I+G+++MDM   ++ D+    +G  ++++G  + +++VA A+G   Y++   +  
Sbjct: 287 GKRSRIIGRVSMDMITVEL-DASQEGLGAEVELWGDVVNINEVAEAAGMIPYEIFCNV-K 344

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 345 RAKFTYS 351


>gi|308174216|ref|YP_003920921.1| alanine racemase [Bacillus amyloliquefaciens DSM 7]
 gi|307607080|emb|CBI43451.1| alanine racemase [Bacillus amyloliquefaciens DSM 7]
 gi|328912552|gb|AEB64148.1| alanine racemase [Bacillus amyloliquefaciens LL3]
          Length = 393

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 98/384 (25%), Positives = 165/384 (42%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + +++DL A+K N  ++     N ++  AVVK NAYG G  ++A     +G  +  V 
Sbjct: 6   REVWIEVDLDAIKKNIRAIRRHIPNKSKIMAVVKANAYGHGSVEVARQALESGASELAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GV 120
           SVEEG+ LR     A I VL        K     N+      V  +   ++++       
Sbjct: 66  SVEEGIVLRRAGITAPILVLGFTALSCVKKSAVWNITLSAFQVSWIKKANQILEEEAVSK 125

Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+  + + L       +        I +H + AD+P + +  +Q 
Sbjct: 126 RLSIHINVDTGMGRLGVRTEKDLLAVVKALKSSTYLSWDGIFTHFSTADEPDTELTMLQH 185

Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSH 230
           E+F + +   K          + +++  +  P +   + R GI LYG             
Sbjct: 186 EKFISFLRFLKDQGITLPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKELDLV 245

Query: 231 PMQTVVTAEARIILIRK-ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            +   ++ +ARI  ++        VSYG         +IA   IGYADGY   LS     
Sbjct: 246 KLTPALSLKARIAYVKAMVTEPRTVSYGATYIAEPGEIIATIPIGYADGYSRALSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  VP+ G++TMDM M  + +S   + G+ + I+G     +I +D+
Sbjct: 303 --------GFILYRGRRVPVAGRVTMDMIMVSLGESEG-KQGEEVVIYGKQKGAEISVDE 353

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY+++  +  R  +FY
Sbjct: 354 IAEMLGTINYEVVSTLSRRVPRFY 377


>gi|257063503|ref|YP_003143175.1| alanine racemase [Slackia heliotrinireducens DSM 20476]
 gi|256791156|gb|ACV21826.1| alanine racemase [Slackia heliotrinireducens DSM 20476]
          Length = 434

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 160/386 (41%), Gaps = 31/386 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
             +  +++DL A++NN   +  +     R  AVVK + YG G  ++A A   AG     V
Sbjct: 58  QRWSWVEVDLGAIRNNVQVVKRIIPAGCRFMAVVKADGYGHGAVEVARASIAAGANQLAV 117

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
             V E V+LR     A I VL         ++   +++P + S      Y+++    G+ 
Sbjct: 118 AGVYEAVELRKAGITAPILVLSEPPAESIPLLLAYDIMPSVYSAEFAIAYAEMADLHGMR 177

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            PY L V+TG NR+G+   E +DF       +        +H A AD   +   S+Q  R
Sbjct: 178 APYHLAVNTGMNRIGVRFDEVIDFCRQVEFHRALDRVGTFTHFATADCAETFDFSLQFRR 237

Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQT 234
           F  +I   + +         A+S+  L  P  H  + R GISLYG    I       ++ 
Sbjct: 238 FCEVIDGMRQVGLDPGIVHCANSAATLRYPQTHLDMVRFGISLYGYHPCIETRGHFDLRP 297

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  ARI  +      E VSYG   +      I    +GYADG+   LSG  +      
Sbjct: 298 AMSLHARITAVNTPPMSEGVSYGLHYRSPGSVKICAVPVGYADGFSRGLSGRTAF----- 352

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGPD----IKL 343
                    G +   +G I MD  MF++          L   VGD + +FG      I +
Sbjct: 353 ------IYGGRLCKQVGNICMDQCMFEVDLRTSAMRSRLDPHVGDEVVLFGSKDGCTIYV 406

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +D+     T  ++++  +  R  K Y
Sbjct: 407 EDLCDVLNTIPHEIICAMSLRMPKVY 432


>gi|121603048|ref|YP_980377.1| alanine racemase [Polaromonas naphthalenivorans CJ2]
 gi|166969423|sp|A1VIH8|ALR_POLNA RecName: Full=Alanine racemase
 gi|120592017|gb|ABM35456.1| alanine racemase [Polaromonas naphthalenivorans CJ2]
          Length = 365

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 155/376 (41%), Gaps = 31/376 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I L AL +N   +   + +A+  AVVK NAYG G E++  AL +     F +  
Sbjct: 3   RPILATIHLAALSHNLARVRTAAPDAKVWAVVKANAYGHGIERVFDALRS--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  +LR    +  I +L G    ++ ++     L   I    Q+   +      + H 
Sbjct: 61  LDEARRLRALDWRGPILLLEGCFEARDLELCSRLGLWHTIHCQEQIDMLAAH-KTQLPHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NRLG + +                   ++ H   AD P       QL+ F 
Sbjct: 120 VFLKMNTGMNRLGFTPERFRAAWIRLNALPQVDEISLMQHFPDADGPKGIT--AQLQAFD 177

Query: 184 TLISHYKGIEASLASSSGILLGPNY---HFQLTRPGISLYGGTDKINK----SHPMQTVV 236
            +     G E +L++S+ IL             RPGI LYG      +       +Q  +
Sbjct: 178 AVTHDLPG-ERTLSNSAAILRHTGALAGRSDWVRPGIVLYGSAPDFPEHSASDWELQPTM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  +RII ++   AG+ V YG          I V A GYADGYP                
Sbjct: 237 TLSSRIIGLQTLAAGDTVGYGSSFVAEGPMRIGVVACGYADGYPRH-----------CPT 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALAS 350
           G    + G    ++G+++MDM   D+T      +G  + ++G        + +D+VA A+
Sbjct: 286 GTPVLVNGVRTRMVGRVSMDMITVDLTPVPRAGMGSEVTLWGRASKGGAMLPIDEVARAA 345

Query: 351 GTTNYDLLVRIGTRYA 366
           GT  Y+L+  +  R  
Sbjct: 346 GTVGYELMCAVAPRVP 361


>gi|189347602|ref|YP_001944131.1| alanine racemase [Chlorobium limicola DSM 245]
 gi|189341749|gb|ACD91152.1| alanine racemase [Chlorobium limicola DSM 245]
          Length = 374

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 160/378 (42%), Gaps = 25/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +I L+ L+ N   +   +G   R   +VK NAYG G  ++A  L + GV DF V 
Sbjct: 8   PMAEARIKLSHLEENIRHIRQWTGKKLRIMGIVKANAYGHGVHRVAETLESVGVSDFGVA 67

Query: 64  SVEEGVKLRLYT-PQAR--IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119
           +++E V LR     +    I         Q       ++   + S   L     K  + G
Sbjct: 68  NIQEAVALRTGGALKKPAAILAFSSPLEPQIDGYLQHDIEMTVCSFDILRAAGEKAAAYG 127

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 ++VDTG  RLGL   E ++   N       +L  I +H A    P       QL
Sbjct: 128 KKLAVQVKVDTGMGRLGLQPAETMELLRNINRSPDIELKGIYTHFAEGSKPGG-YTGRQL 186

Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-- 232
           E FR L++ Y+      I    ASS  IL   +  F + RPGI LYG         P+  
Sbjct: 187 EEFRNLVTQYESESGTTICKHAASSGAILCRKDAWFDMVRPGILLYGYLPDPCMPAPIAV 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V+  EAR+I I+    G  VSY    +      IA  A GYADGYP  LS        
Sbjct: 247 TPVMQMEARVIFIKTVAPGTSVSYNRTWRAAESRSIATVAAGYADGYPRALSN------- 299

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASG 351
                G+  I G   P +G +TMD  M D+     ++ GD   +FG +    DD+A + G
Sbjct: 300 ----KGRVVINGKSCPQVGTVTMDQIMIDLGKEHDVKTGDKAILFGWEGPTADDIAGSIG 355

Query: 352 TTNYDLLVRIGTRYAKFY 369
           + +Y++L  +  R  + +
Sbjct: 356 SISYEVLCSVSNRVVRIF 373


>gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 817

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 161/370 (43%), Gaps = 21/370 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L A+ +N +     L+   +   +VK   YG G  +IA  L +  V    V   +E
Sbjct: 457 LEINLNAISHNLNYFKSKLNPKTKIMVMVKAFGYGSGSFEIAKLLAHHKVNYLGVAFADE 516

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G++LR    Q  I VL          I   NL P I S+  L  + K+       S+P  
Sbjct: 517 GIELRQAGIQLPIMVLNPEMTS-FPSIIQYNLEPEIYSIRGLKAFIKITQQKELTSYPIH 575

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184
           ++++TG NRLG   Q   +            +  I+SHLA +DD         Q+  F T
Sbjct: 576 IKINTGMNRLGFDAQIIPELISILQKHDSVLVKSILSHLAASDDLAQDIFTRKQISDFDT 635

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           + +             ++++S I   P   F + R GI LYG ++  N++  ++ V T +
Sbjct: 636 ISNKITTKLKINPIRHISNTSAISNYPQAQFDMVRLGIGLYGVSNDANETKKLENVGTLK 695

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + I  IR   +G+ V Y  +  + + + IA   IGYADG                   G 
Sbjct: 696 SIISQIRNLNSGQSVGYNRRFMVKKPTTIATIPIGYADGISRAWGNEV----------GY 745

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             +     PI+G I MDM M D+T   +   G+ + IFG    +  +A A+ T  Y++L 
Sbjct: 746 VLVNEQKAPIVGSICMDMLMIDVTKI-NCSEGNQVIIFGKTPSVTTIAKATKTIPYEILT 804

Query: 360 RIGTRYAKFY 369
            I +R  + +
Sbjct: 805 SISSRVKRVF 814


>gi|19746744|ref|NP_607880.1| alanine racemase [Streptococcus pyogenes MGAS8232]
 gi|50914870|ref|YP_060842.1| alanine racemase [Streptococcus pyogenes MGAS10394]
 gi|23813643|sp|Q8NZK4|ALR_STRP8 RecName: Full=Alanine racemase
 gi|73921670|sp|Q5XAA4|ALR_STRP6 RecName: Full=Alanine racemase
 gi|19748973|gb|AAL98379.1| putative alanine racemase [Streptococcus pyogenes MGAS8232]
 gi|50903944|gb|AAT87659.1| Alanine racemase [Streptococcus pyogenes MGAS10394]
          Length = 366

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 159/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S+        +T AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + K+     +   ++S+  L    +        
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELKLAITRQVTVTVASLEWLAMAKQEWPDLKGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++D+G  R+GL     +D            +  I +H A AD+      + QL+ F
Sbjct: 125 KVHIKIDSGMGRIGLRSVTEVDNLIAGLKSMGADVEGIFTHFATADEADDTKFNQQLQFF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + LI+  +        ++S+  +   +  F   R GI  YG       ++   P+Q  ++
Sbjct: 185 KKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPLQEALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG+ V YG      +   +    IGYADG+   + G            
Sbjct: 245 LESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    I+G+++MD     ++ +  +  G  + + G     +I   D+A    T 
Sbjct: 295 --VLVDGQFCEIIGRVSMDQLTIRLSKAYPL--GTKVTLIGSNQQKNISTTDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIPRIY 366


>gi|315302294|ref|ZP_07873187.1| alanine racemase [Listeria ivanovii FSL F6-596]
 gi|313629339|gb|EFR97579.1| alanine racemase [Listeria ivanovii FSL F6-596]
          Length = 371

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 145/379 (38%), Gaps = 31/379 (8%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N       L  N    AVVK NAYG G  ++A     AG + F V
Sbjct: 9   HRPTWIEIDRAAIRENIQNEQKHLPKNVAVWAVVKANAYGHGIIEVAKIAKEAGAKGFCV 68

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    +   I VL         +    N+   I S   L       +  V 
Sbjct: 69  AILDEALALREAGFRDDFILVLGATRKEDANLAARENISLTIYSEDWLEAL----NPEVP 124

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLE 180
               L++D+G  RLG+   E                L    +H A AD   +     QL 
Sbjct: 125 LKVHLKIDSGMGRLGIREAEEAAQIEAKIAGNMNLILEGAYTHFATADQLETSYFDQQLA 184

Query: 181 RFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           RF T++            A+S+  LL     F   R GIS+YG T  I         ++ 
Sbjct: 185 RFHTILRALNERPTFVHTANSAASLLQSQVGFDAIRFGISMYGLTPSIEIKASLPFKLKQ 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     I+ +++   G+ VSYG     T    +A   IGYADG     SG         
Sbjct: 245 ALALYTEIVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGF-------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G  VPI+G++ MD T+  +      + G  + I G D    +  DD A   
Sbjct: 297 ----HVLVNGEKVPIIGRVCMDQTIIKLP--YKFQTGSKVTIIGTDEANTVTADDAAEYL 350

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY++   +  R  + Y
Sbjct: 351 DTINYEVTCMLTERIPRKY 369


>gi|299822355|ref|ZP_07054241.1| alanine racemase [Listeria grayi DSM 20601]
 gi|299815884|gb|EFI83122.1| alanine racemase [Listeria grayi DSM 20601]
          Length = 368

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 153/379 (40%), Gaps = 30/379 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++++  A++ N  +    L       AVVK NAYG G  ++A    +AG   F V
Sbjct: 6   HRPTWIEVNGDAIRANITNEKAHLPAETAVWAVVKANAYGHGIIEVAKIAKSAGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR     +  I VL  +      +  +  +   +       + ++L      
Sbjct: 66  AILDEALALREAGFTSELILVLGAVPAEYANLAAEKQISLTLFDE---NWLTELPVLTAK 122

Query: 122 HPYALQVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               +++DTG  RLG    EAL         + L +   I +H A AD   +     QL 
Sbjct: 123 LSLHVKLDTGMGRLGFRNGEALKRVSTKLAEQPLLEWEGIYTHFATADQKDTTYYEEQLA 182

Query: 181 RFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
           +F  L S  K       +A+SS  LL     F   R GI++YG T            +Q 
Sbjct: 183 KFEGLFSEIKPRPRFVHVANSSAALLHDQTGFNAVRFGIAMYGLTPSDEIADILPFELQP 242

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++   +I+ +++  AG+ VSYG   +  ++  +A   IGYADG+    +G         
Sbjct: 243 ALSLYTKIVQVKQLQAGDCVSYGATYQAAQEEWVATLPIGYADGWIRKYTGFSL------ 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
                  ++G    I+G++ MD  +  +     +  G  + + G      I  ++ A   
Sbjct: 297 ------LVEGEYAEIVGRVCMDQLIIRLPRYYPV--GTKVTLIGKSGEKQITAEEAARKI 348

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T +Y++   +  R  + Y
Sbjct: 349 ETIDYEVTCLLSERIPRIY 367


>gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
 gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 150/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +     L    +   +VK +AYG G  +IA  L    V    V   +E
Sbjct: 485 LEVNLGAMIANLNHYRGKLKPETKMVCMVKASAYGAGSYEIARTLQEHHVDYLAVAVADE 544

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR     A I ++        K +FD  L P + S   L    K        + P  
Sbjct: 545 GSDLRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 603

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + ++          +       + SH   +D          Q+E F  
Sbjct: 604 VKLDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDAQQFDAFTRKQIETFEK 663

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +S+GI   P   F + R GI LYG +   N    M  V T +
Sbjct: 664 ASMLLQEAFPYKILRHICNSAGIERFPGAQFDMVRLGIGLYGISPIDN--SIMHNVSTLK 721

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ IR     + V Y  +  LTR S IA   IGYADG    L                
Sbjct: 722 TTILQIRDVPEEDTVGYSRKGHLTRPSRIAAIPIGYADGLNRHLGNGH----------AY 771

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD ++IFG  + +  ++   GT  Y++L 
Sbjct: 772 CLVNGQRAPYVGNICMDVCMIDVTDI-DCKEGDSVEIFGDHLPITVLSDVLGTIPYEVLT 830

Query: 360 RIGTRYAKFY 369
            + TR  + Y
Sbjct: 831 NVSTRVKRVY 840


>gi|293374646|ref|ZP_06620961.1| alanine racemase [Turicibacter sanguinis PC909]
 gi|292646736|gb|EFF64731.1| alanine racemase [Turicibacter sanguinis PC909]
          Length = 377

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 156/376 (41%), Gaps = 23/376 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M        ++DL A+  N   +  L  N +  AVVK N YG G  +++     AGV + 
Sbjct: 1   MSFYRDTWAEVDLDAIVYNVQQIKKLHPNKKIFAVVKANGYGHGDVEVSRVALLAGVTNL 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V+ ++E + LR    +A I VL         I    N+         ++   +L     
Sbjct: 61  AVSGLDEALGLRKAGIEAPILVLGMTRLKDVSIAAQYNIALTAHDECWISKLVEL-PLET 119

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L++D+G +RLGL+ +E +  T          +L  + +H+A A D  +     Q+
Sbjct: 120 PVKVHLKIDSGMHRLGLTTKEKVKETFELLKAAPNVELEGVFTHMATA-DCDADYLEYQI 178

Query: 180 ERFRTLIS--HYKGIEASLASSSGILLGPNYHFQ-LTRPGISLYGGTDK---INKSHPMQ 233
           + F +LI       I+     ++  LL   + F    R G+ LYG       I     ++
Sbjct: 179 KTFESLIEDLDLSSIKYVHIENTATLLQREFEFDHAIRLGLGLYGINPDATFIPLEFDLK 238

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   ++I  +++   G+ V YG       D  I V  IGYADG+     G +      
Sbjct: 239 PALKLYSKITQVKRINKGDKVGYGATYTAENDEWIGVVPIGYADGWIRAHQGRN------ 292

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
                   ++G    I+G++ MD  M  +     +E+G  + + G  + ++ VA   GT 
Sbjct: 293 ------VIVEGKECEIIGRVCMDQLMIRLPH--EVEMGTMVTLIGDGMPVERVADEIGTI 344

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++L  +  R  + Y
Sbjct: 345 SYEILCMLSDRVPRVY 360


>gi|332652709|ref|ZP_08418454.1| alanine racemase [Ruminococcaceae bacterium D16]
 gi|332517855|gb|EGJ47458.1| alanine racemase [Ruminococcaceae bacterium D16]
          Length = 373

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 166/378 (43%), Gaps = 30/378 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                ++DL AL +N   +  AL+   R  +VVK +AYG G   +A  L   GV+ F V 
Sbjct: 6   SRAWREVDLNALAHNARVLQGALAPGCRLMSVVKADAYGHGSIPVARRLEAEGVKAFAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            +EEG+ LR    Q +I +L    PG    I    L+  ++          L + GV   
Sbjct: 66  CLEEGIALRRSGIQGKILILGYTSPGMAFQICRWKLVQTVADEGHGR---ALAAQGVPLS 122

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLE 180
             L +DTG +RLG+ +++  +     +      +    SHL  +D            QLE
Sbjct: 123 VHLALDTGMHRLGIPVED-HEAISRLYKLPNLNIQGTFSHLCVSDSLEAKDVSFTHTQLE 181

Query: 181 RFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232
           +F   +   K       E  + +S GI   P       R GI+LYG         +   +
Sbjct: 182 QFYGAVRWLKTHGMNPGEIHIQASYGIWNLPPQPCFWARAGIALYGIFSNDAHTERKLDL 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V++  AR+ L+R  L GE   YG   +  +   +AV  IGYADG P +LS        
Sbjct: 242 HPVLSLRARVALVRTMLPGEGAGYGLAFRTDQMRRLAVVTIGYADGLPRSLS-------- 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
               GG+  + G   P++G++ MD  M D+TD   ++ GD   I G D    I+ +DVA 
Sbjct: 294 --QQGGEVLLHGTRCPMVGRMCMDQLMVDVTDVPCVKPGDVATIIGTDGGEVIRAEDVAG 351

Query: 349 ASGTTNYDLLVRIGTRYA 366
             GT   +LL R+G R  
Sbjct: 352 QCGTITNELLSRLGQRLP 369


>gi|261363843|ref|ZP_05976726.1| alanine racemase [Neisseria mucosa ATCC 25996]
 gi|288568436|gb|EFC89996.1| alanine racemase [Neisseria mucosa ATCC 25996]
          Length = 352

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 162/367 (44%), Gaps = 18/367 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L++N+ ++  + G  +  AV+K +AYG G  + A AL       F V +
Sbjct: 2   RPLNARIRLDNLRHNYQTLKQIHGG-KMLAVIKADAYGHGAVRCAHALSEI-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           V+E V+LR       I +L G+    E   +   NL P + S  QL              
Sbjct: 60  VDEAVELRESGITNPIVLLEGVFEAAEYATVDKYNLWPGVGSQWQLEALIAH-HWQNPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G                K     +  SH ACAD+P + +  +QLE F 
Sbjct: 119 VWLKMDSGMHRAGFFPHNYTSAYTALKQCKHVDSIVKFSHFACADEPDNGMTEMQLEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+   +R+ 
Sbjct: 179 LACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVMRLTSRVF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       V YG     ++ + + + A GYADGYP   S                 ++
Sbjct: 238 GERVLQPHSPVGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAVE 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    I+G+++MDM   ++ D+    +G  ++++G  + +++VA A+G   Y++L  +  
Sbjct: 287 GKRSRIIGRVSMDMITVEL-DASQEGLGAEVELWGDVVNINEVAEAAGMIPYEILCNV-K 344

Query: 364 RYAKFYT 370
           R    Y+
Sbjct: 345 RAKFTYS 351


>gi|229015244|ref|ZP_04172279.1| Alanine racemase [Bacillus mycoides DSM 2048]
 gi|228746046|gb|EEL96014.1| Alanine racemase [Bacillus mycoides DSM 2048]
          Length = 340

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 153/350 (43%), Gaps = 24/350 (6%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
            A VK N YG G  +++    N+GV    V S+EE +KLR    QA I +L    P    
Sbjct: 1   MATVKANGYGHGAVEVSKKAINSGVDYLAVASLEEAIKLRKSDIQAPILILGYTPPSAAN 60

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +   +L   I  +      S      G      ++VDTG  RLGL  +EA DF H    
Sbjct: 61  HVVYWDLTQSIFDIEHAEALSTSGQILGKKAKVHVKVDTGMGRLGLQAEEASDFIHIVSR 120

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLGP 206
                L  + SH A AD+        Q  R++ L+   +  +       +A+S+  +  P
Sbjct: 121 MDGLYLEGVYSHFATADEADKRYAEKQKNRWKRLLEELEKRKVSIPLFHIANSAATIEMP 180

Query: 207 NYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
           +  + + R GIS+YG             ++  +  + ++I I+    G  VSYG      
Sbjct: 181 DMTYDMVRIGISMYGLYPSKEVNKTKVNLRQAIQLKTKVIYIQTLEKGYGVSYGATNIER 240

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
             ++IA   IGYADGY   LSG                I G + P+ GKI MD  M D+T
Sbjct: 241 DKAIIATIPIGYADGYSRRLSGT-----------AYVLIHGQLAPVFGKICMDFCMIDVT 289

Query: 324 DSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D   + +GD + ++G      I LD+VA   GT +Y++   +G R  + Y
Sbjct: 290 DIKGVNIGDEVVVYGGQGDYFISLDEVASMLGTISYEVACNLGQRVPRIY 339


>gi|16760692|ref|NP_456309.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29141550|ref|NP_804892.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213162931|ref|ZP_03348641.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213420203|ref|ZP_03353269.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213426623|ref|ZP_03359373.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213648191|ref|ZP_03378244.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|20137367|sp|Q8Z688|ALR2_SALTI RecName: Full=Alanine racemase, catabolic
 gi|25291652|pir||AC0723 alanine racemase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16502989|emb|CAD05485.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137177|gb|AAO68741.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 356

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 164/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y 
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYG 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|25027149|ref|NP_737203.1| alanine racemase [Corynebacterium efficiens YS-314]
 gi|259506716|ref|ZP_05749618.1| D-alanine racemase [Corynebacterium efficiens YS-314]
 gi|81846897|sp|Q8FS13|ALR_COREF RecName: Full=Alanine racemase
 gi|23492430|dbj|BAC17403.1| alanine racemase [Corynebacterium efficiens YS-314]
 gi|259165699|gb|EEW50253.1| D-alanine racemase [Corynebacterium efficiens YS-314]
          Length = 367

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 18/372 (4%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L  +IDL A+ +N   +    G A+  AVVK + Y  G +++AP +   G   F V ++
Sbjct: 3   LLTTRIDLDAIAHNTRLLKNRVGAAKLMAVVKADGYNHGMDRVAPVMAANGADAFGVATI 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            E + LR       I               +  +   + S               +   +
Sbjct: 63  AEALALRATGITTPILCWIWSPEQDWAAAVEAGIDLAVISPRHARVLVDAPPTSRAIRVS 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++VDT  +R G+  Q+         +    +++ + +HL+CAD+P +     Q E FR  
Sbjct: 123 VKVDTALHRSGVDEQDWDAVFTLLRDCGHIEVTGLFTHLSCADEPGNPETDHQAETFRRA 182

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           I   + +     E  L +S   L  P+ H  + RPG++LYG        H ++  +T   
Sbjct: 183 IDRARALGLEVPENHLCNSPATLTRPDLHMDMVRPGVALYGLEPIPGLDHGLRPAMTWAG 242

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I +++    GE  SYG   +   D  +AV   GYADG P         H          
Sbjct: 243 AITVVKPIRKGEGTSYGLTWRAEADGFVAVVPAGYADGVPRAAQDHLRVH---------- 292

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIF-GPDIKLDDVALASGTTNYDLL 358
            + G+  P +G++ MD  +  + D+   +  GD   IF G  +   ++A A  T NY+++
Sbjct: 293 -VNGHDYPQVGRVCMDQFVIFLGDNPHGVTAGDEAVIFGGTGMSATELADALATINYEVI 351

Query: 359 VRIGTRYAKFYT 370
            R   R  + YT
Sbjct: 352 CRPTGRTVRDYT 363


>gi|213026678|ref|ZP_03341125.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 356

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 164/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y 
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYG 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|225023462|ref|ZP_03712654.1| hypothetical protein EIKCOROL_00320 [Eikenella corrodens ATCC
           23834]
 gi|224943811|gb|EEG25020.1| hypothetical protein EIKCOROL_00320 [Eikenella corrodens ATCC
           23834]
          Length = 351

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 19/366 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   I L+ L++N+  +  L GN +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLTATIRLSHLRHNYQLLKRLHGN-KMLAVVKADAYGHGAVRCARALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR     A I +L G+  P +   + +  L P + +  QL              
Sbjct: 60  LDEGIELRQAGVSAPIVMLEGVFEPAEYAAVDEYRLWPGVQNQWQLESLLAHR-WREPVT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R+G   Q                  + ++H A AD+P   + + QL  F 
Sbjct: 119 VWLKMDSGMHRVGFFPQNFAPAHQALRQSPQVAHIVNMTHFARADEPEQAMTTAQLAAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
           T ++   G + SLA+S+ I+  P       R GI+LYG          ++ V+   +RI 
Sbjct: 179 TAVAGLSGAQ-SLANSAAIIAHPAARRDWGRAGIALYGIEPFPGACPELKPVMRLTSRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R    GE V YG      R + I +AA GYADGYP T              G    + 
Sbjct: 238 AERTLQPGEPVGYGASFITERSTRIGIAACGYADGYPRTAQN-----------GCPLTVN 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ++G+++MDM   ++     +  G  ++++G  + +  VA ++GT +Y+LL  I  
Sbjct: 287 GQPSRLIGRVSMDMLAVELDHHQGV--GSEVELWGDAVSVATVAQSAGTISYELLCHI-K 343

Query: 364 RYAKFY 369
           R    Y
Sbjct: 344 RAHYVY 349


>gi|226313784|ref|YP_002773678.1| alanine racemase [Brevibacillus brevis NBRC 100599]
 gi|226096732|dbj|BAH45174.1| alanine racemase [Brevibacillus brevis NBRC 100599]
          Length = 393

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 89/384 (23%), Positives = 151/384 (39%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               ++++L A+K N  S+        +  AVVK NAYG G   +A      G     V 
Sbjct: 6   RETWIEVNLDAIKKNIQSIRRHIPKQTKIMAVVKANAYGHGSVGVARHALEYGATSLAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--- 120
            +EEG+ LR     A I VL      + K     N+         +    K++       
Sbjct: 66  ILEEGIVLRKAGIVAPILVLGFTPLSRVKEAIAWNIELSAFQADWIKKADKIIKSTAFTN 125

Query: 121 SHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + +DTG  RLG+  + A L       +      + I +H + AD+P   +   Q 
Sbjct: 126 RLNIHINIDTGMGRLGVRTKSALLSVVTALTSSSSLAWTGIFTHFSTADEPDHTLTKAQH 185

Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ- 233
           E F   + + K          + +++  +  P Y   + R GI +YG           + 
Sbjct: 186 ELFVQYLRYLKERGFELPTVHMCNTAATIAFPEYSADMIRLGIGMYGLYPSAYIRQLNRV 245

Query: 234 ---TVVTAEARIILIRK-ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
                ++ ++R   ++        +SYG      R  +I    IGYADGY   LS     
Sbjct: 246 KLVPALSLKSRFSYVKTMLTPPFTISYGATYIAKRGEVIGTVPIGYADGYSRALSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  +PI G++TMD  M  + +    + GD + I+G     +I +D+
Sbjct: 303 --------GFVLYQGRRLPIAGRVTMDQMMVSLGEGSG-KQGDEVVIYGKQGNREIPVDE 353

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY+++  +  R  + +
Sbjct: 354 IAEMLGTINYEVVATLSNRIPRLF 377


>gi|319939813|ref|ZP_08014169.1| alanine racemase [Streptococcus anginosus 1_2_62CV]
 gi|319811026|gb|EFW07341.1| alanine racemase [Streptococcus anginosus 1_2_62CV]
          Length = 368

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 154/377 (40%), Gaps = 25/377 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++   +  +DL A++ N   + A    N    AVVK +AYG G   +  ++ +  V  F 
Sbjct: 5   NHRPTKAIVDLAAIRFNIKQITAHIPDNVEKWAVVKADAYGHGAVAVTQSIESI-VDGFC 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V++++E V+LR      +I VL         +  +  +   ++S+  L    +       
Sbjct: 64  VSNIDEAVELREAGISKKILVLGVSDVSAISLAIERKVTCTVASLEWLDLLLQSNIDVAG 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               +++D+G  R+G    +      +   +   Q+  I +H A AD+  +H    QL R
Sbjct: 124 LIVHIKIDSGMGRIGFRDSQEAQEAIHRLTQAGAQVEGIFTHFATADEADTHKFEAQLAR 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F+ ++   + +      ++S+  L          R G  +YG       +   + M+  +
Sbjct: 184 FKEILGQLETVPPIVHASNSATTLWHAETVMNAVRLGDIIYGLNPSGRTLQLPYEMKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + ++ +++  AG  V YG          I    +GYADG+   + G D         
Sbjct: 244 SLVSELVHVKQLEAGADVGYGATYTSENSQYIGTIPLGYADGWTRDMQGFD--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
                I G   PI+G+++MD     +  S    +G  + + G      I   DVA   GT
Sbjct: 295 ---VLIDGQPCPIVGRVSMDQITVRLPQSYP--IGTPVVLIGESGKKSISATDVAEKRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  I  R  + Y
Sbjct: 350 INYEIVCLISDRVPRVY 366


>gi|296119282|ref|ZP_06837850.1| alanine racemase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967674|gb|EFG80931.1| alanine racemase [Corynebacterium ammoniagenes DSM 20306]
          Length = 366

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 104/368 (28%), Positives = 168/368 (45%), Gaps = 22/368 (5%)

Query: 10  KIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I+L A+ +N H +  L   + R   VVK +AYG G EK+AP +  AG       +V+E 
Sbjct: 7   RINLDAISHNVHKLKELVGPDVRLMCVVKADAYGHGVEKVAPVMLKAGADVLGCATVDEA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           V LR     A +                +N++  + S+        L+   V    A++V
Sbjct: 67  VALRSMGIDAPLVAWMWEPEQDLSDALSSNIVIGVPSL---QHAQVLVDIEVPVKVAIKV 123

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +TG +R G+   +  +      +    +++ ++SHLACAD+P +    VQ E FR  I+ 
Sbjct: 124 ETGMHRNGVDRAQWAEVFALLNDAPHIEVTGLMSHLACADEPDNPHTDVQAEEFRAAIAQ 183

Query: 189 YK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            +  G+E     LA+S   L  P+ HF   R G++ YG        H +Q  +T  A II
Sbjct: 184 AREAGLECPINHLANSPATLTRPDLHFDQVRVGLACYGLEPVAGLDHELQPAMTWAANII 243

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            ++    GE   YG       D  +AV  +GYADG P ++ G             +  I 
Sbjct: 244 NVKPIKKGESSCYGLTWTAPADGYLAVLPVGYADGLPRSIQGSL-----------QVTIG 292

Query: 304 GYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRI 361
           G   P +G+++MD  + D+ D+   +   D   IFG       ++A A+GT NY+++ R 
Sbjct: 293 GKSYPHVGRVSMDQIVIDLGDNPFGVRADDEAIIFGEGGHSATELADAAGTINYEIICRP 352

Query: 362 GTRYAKFY 369
             R  + Y
Sbjct: 353 TGRTKRIY 360


>gi|168237864|ref|ZP_02662922.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736004|ref|YP_002114836.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194711506|gb|ACF90727.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289280|gb|EDY28647.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 356

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGAILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRTMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|319404005|emb|CBI77593.1| Alanine racemase [Bartonella rochalimae ATCC BAA-1498]
          Length = 373

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 193/365 (52%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID+ A+  N+ ++         +AVVK +AYGLG EKIAPALY AG + FF+  ++E 
Sbjct: 19  ATIDIGAIIANYKTLVQRVAPVECSAVVKADAYGLGAEKIAPALYQAGCRTFFIAHLKEA 78

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++L+   P    + +L GI P  E+ +  T ++PV++S  ++  +       G   P  +
Sbjct: 79  LQLKAILPNNVTLILLNGIPPTAEEFVTQTGIVPVLNSRNEIENWQMHCQKNGKKFPAII 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E      N    ++  +  IISHLA  D+ +   N  Q    +  +
Sbjct: 139 QIDTNMNRLGLDQEELQWLIQNPTLFEIADIKYIISHLANGDNATHTSNCEQKNAMKKAL 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     +ASLA+S GI LGP+++F L RPGI LYG          +++V+  +A++I  R
Sbjct: 199 AQLPACKASLANSGGIFLGPDFYFDLVRPGIGLYGIDPHQKHPTSLKSVLKLKAQVIQSR 258

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YGG     + S++   +IGYADG+   LS             G  +   + 
Sbjct: 259 CTEAGTPVGYGGSFITQKPSILTTISIGYADGWLRNLSN-----------KGSVYFNQHK 307

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+I+MD  + D T+      + GD++++ G    +++VA  +GT  Y++L  +G+R
Sbjct: 308 LPIIGQISMDSIIVDATNLKHEKPKRGDWVELIGKHQTVENVAADAGTIPYEILTSLGSR 367

Query: 365 YAKFY 369
           Y + Y
Sbjct: 368 YKRIY 372


>gi|281500991|pdb|3KW3|A Chain A, Crystal Structure Of Alanine Racemase From Bartonella
           Henselae With Covalently Bound Pyridoxal Phosphate
 gi|281500992|pdb|3KW3|B Chain B, Crystal Structure Of Alanine Racemase From Bartonella
           Henselae With Covalently Bound Pyridoxal Phosphate
          Length = 376

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 188/364 (51%), Gaps = 14/364 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID+ A+  N+ ++         +AVV  NAYGLG  KIAPALY AG + FFV  +EE 
Sbjct: 23  ATIDVRAIVANYRTLAQHVAPTECSAVVXANAYGLGAHKIAPALYQAGCRTFFVAQIEEA 82

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++L+   P+   I +L G     E+ +  + +IP+++S   +  +  L        P  +
Sbjct: 83  LQLKAVLPENVMIALLNGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAII 142

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVDT  +RLGL  +E      N    +  ++  I+SHLA  +D S   N+ QL  F+ ++
Sbjct: 143 QVDTNMSRLGLDKKELQKLIKNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVL 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     + S A+S GI LG +++F L RPGI+LYG         P++ VV  EA+++  R
Sbjct: 203 AQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPHGKHPTPLKAVVKVEAQVLQSR 262

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V Y       R S +A  +IGYADG+P  LS             G  +  G+ 
Sbjct: 263 FIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSN-----------KGTVYFNGHK 311

Query: 307 VPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +PI+G I+MD  + D TD     + GD++++ GP   L+ V+  + T  +++L  +G RY
Sbjct: 312 LPIVGHISMDSIIVDATDLDKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKRY 371

Query: 366 AKFY 369
            + Y
Sbjct: 372 KRIY 375


>gi|239980001|ref|ZP_04702525.1| alanine racemase [Streptomyces albus J1074]
          Length = 402

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 161/385 (41%), Gaps = 32/385 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R++IDL AL+ N  ++ A +  A   AVVK +AYG G  + A A   AG     V + 
Sbjct: 2   RARVEIDLGALRANVRALRARTDGAAYMAVVKADAYGHGMVRCAEAALQAGATWVGVATP 61

Query: 66  EEGVKLRLYTPQ---ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVS 121
            E ++LR        AR+        G  +   + +L   +S +  L        + G  
Sbjct: 62  YEALELRAAGVTPERARVMCWLWTPGGPWREGIEADLDMSVSDLWALAEVTEAARATGRR 121

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQ 178
               L+ DTG  R G    +  D    +   +   L  ++ + SH ACAD+P     + Q
Sbjct: 122 ARIQLKADTGLGRNGCQPADWADLVDRARAAEREGLVTVTGLWSHFACADEPGHPSIAAQ 181

Query: 179 LERFRTL-----ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229
           L RF  +         +     +A+S  +L  P   F L RPGI++YG +          
Sbjct: 182 LARFDEMSGRAYAGGLRPEVRHMANSPAVLTLPEARFDLVRPGIAMYGLSPAPELGTPAD 241

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           H ++ V+T  A + L++    G  VSYG        + + +  +GY DG P   SG    
Sbjct: 242 HGLRPVMTLAAPLALVKHVPGGHGVSYGHHYVTAGPTTLGLVPLGYGDGVPRHASG---- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G   + G    + G+I MD  + D+      E G    +FGP    +   +D
Sbjct: 298 -------AGPVLVDGKWRTVAGRIAMDQFVVDLGGETPPE-GTEAVLFGPGDRGEPGAED 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
            A A+GT  Y+++ RIG R  + + 
Sbjct: 350 WARAAGTIGYEIVTRIGGRVPRVHV 374


>gi|55823619|ref|YP_142060.1| alanine racemase [Streptococcus thermophilus CNRZ1066]
 gi|81820232|sp|Q5LY71|ALR_STRT1 RecName: Full=Alanine racemase
 gi|55739604|gb|AAV63245.1| alanine racemase [Streptococcus thermophilus CNRZ1066]
 gi|312279040|gb|ADQ63697.1| Alanine racemase [Streptococcus thermophilus ND03]
          Length = 367

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 156/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     K+DL+A+  N   + +      +T AVVK NAYG G  ++A  +    V  F V
Sbjct: 6   HRPTLAKVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHVSKQ-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  + P    +    N+   ++S+  L    K        
Sbjct: 65  SNLDEALELRQAGIEQPILILGVVLPDGVPLAIQENISLTVASLEWLALAQKQGLDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+G+   +  D            +  I +H A AD+        QL  F
Sbjct: 125 TCHIKVDSGMGRIGVRNLKDADNLIAGLKALGADVEGIFTHFATADEADDSKFKRQLSFF 184

Query: 183 RTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             L+ +   +      ++S+  +      F   R G+ +YG       +   + +Q  ++
Sbjct: 185 TDLVDNLTARPRLVHASNSATSIWHATTVFNTVRLGVVIYGLNPSGSVLELPYNIQPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E  +I ++   AG+ V YG     T + +I    IGYADG+   L G            
Sbjct: 245 LETALIHVKTLPAGQEVGYGATYTTTAEEVIGTLPIGYADGWTRDLQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G + PI+G+++MD     +     +  G  + + G +    I   +VA   GT 
Sbjct: 294 -HVIVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAEKRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRVPRSY 366


>gi|160872424|ref|ZP_02062556.1| alanine racemase [Rickettsiella grylli]
 gi|159121223|gb|EDP46561.1| alanine racemase [Rickettsiella grylli]
          Length = 367

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 97/364 (26%), Positives = 170/364 (46%), Gaps = 19/364 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    ++++L AL +N   +  ++  ++  A+VK NAYG G   IA AL +  +  F V+
Sbjct: 2   SRPFTVELNLGALCHNVKRVRDIAPRSKLLAMVKANAYGHGLLPIAKALTD--IDGFGVS 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             EE + LR    + RI ++ GI    E  ++ D  L  VI    QL   SK        
Sbjct: 60  CSEEALYLRQAGLKQRIVLMEGIFSQDEISLLTDYELDTVIHDHHQLYLLSKH-PLPRKV 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+++TG NRLG S  +               +  +++H + AD+  +     Q++ F
Sbjct: 119 NVWLKINTGMNRLGFSPNDFDAVLDKLSRHAWLNIVCVMTHFSNADNIRNTTTKNQIKLF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAE 239
              +  Y     SLA+S+ IL  P+ H    RPG+ LYG +   N S   + ++ V+T +
Sbjct: 179 EQTLKGYP-FPTSLANSAAILASPHVHADWVRPGLMLYGVSPFSNSSGAHYGLKPVMTLK 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II I++   G+ V Y G     +   +   AIGY DGYP +              G  
Sbjct: 238 SEIISIQQLKKGDKVGYRGTWISPQSLRVGTVAIGYGDGYPYSA-----------KSGTP 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +  ++G ++MDM   ++ + L  ++GD + ++G  + ++ +A  + +  Y+LL 
Sbjct: 287 ILVNGKLTELIGHVSMDMLTVNLLNQLETKIGDSVVLWGAGLPVEQIAKRTSSFCYELLC 346

Query: 360 RIGT 363
            I  
Sbjct: 347 GINR 350


>gi|86361167|ref|YP_473054.1| alanine racemase protein [Rhizobium etli CFN 42]
 gi|86285269|gb|ABC94327.1| alanine racemase protein [Rhizobium etli CFN 42]
          Length = 377

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 193/366 (52%), Gaps = 15/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E 
Sbjct: 23  LTIDLAALGRNYSKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82

Query: 69  VKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           V+LR    +A +IFVL G+ PG E    ++ ++PV++S+ Q   +S+       S P  L
Sbjct: 83  VRLRPALAKAAQIFVLNGLQPGSELACAESGIVPVLNSLAQWRQWSETARRLKRSLPAVL 142

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLG   +E  +      +    ++  I+SHLACADD  S  N  Q+     + 
Sbjct: 143 QFDTGMSRLGFPEEERAELAAAIRDGANVEILFIMSHLACADDLESSQNGEQIAEMARIA 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             + G + S A+S G+ LG  YH  L RPGI+LYGG       +PM+ V+  +  ++  R
Sbjct: 203 DEFPGFDISFANSGGVFLGDAYHGVLARPGIALYGGAPNAGGKNPMEPVLRLDVAVVQTR 262

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              +G  + YGG       + +A  A GYADG P +L              G  + KG  
Sbjct: 263 TVPSGTKIGYGGAYVTRSQTRLATIAAGYADGLPRSLGDR-----------GAVYHKGTR 311

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+++MD    DIT      + +G  +++ GP+  L+DVA  +GT +Y++L  +G R
Sbjct: 312 LPIVGRVSMDSATVDITALPEGALSLGSLVEVLGPNQTLEDVAGDAGTISYEILTGLGDR 371

Query: 365 YAKFYT 370
           Y + Y 
Sbjct: 372 YDRHYC 377


>gi|227505268|ref|ZP_03935317.1| alanine racemase [Corynebacterium striatum ATCC 6940]
 gi|227198167|gb|EEI78215.1| alanine racemase [Corynebacterium striatum ATCC 6940]
          Length = 363

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 98/371 (26%), Positives = 165/371 (44%), Gaps = 21/371 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            LR +IDL A+ +N   +      A+   VVK +AYG G +++AP +  AG   F V ++
Sbjct: 1   MLRTRIDLDAIAHNVSLLKEKVAPAQLMCVVKADAYGHGVKEVAPVMAAAGADAFGVATL 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E V+LR       I         +        +   + S+   T    L+   V+    
Sbjct: 61  DEAVELRRSGIDQPIAAWIWDSTDEVAEALACRIHIGVPSL---THARCLVETEVAAKVY 117

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF--- 182
           ++V+TG +R G+   +  +      +    ++  ++SH ACAD+P +  N  Q   F   
Sbjct: 118 IKVETGLHRSGVDESDWDEVFALFRDAPQIEVLGLMSHFACADEPDNPFNDEQEATFRRA 177

Query: 183 --RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
             R   +  +     LA+S  +L  P+ +F+L RPG++ YG      + H ++  +T  A
Sbjct: 178 IERARAAGLECPINHLANSPAVLDRPSAYFELVRPGLACYGLEPIPGRDHGLKPAMTWAA 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I+ ++   AGE  SYG      +   +A    GYADG P    G               
Sbjct: 238 SIVNVKPIEAGEATSYGQTWHAEKRGFLATVPCGYADGLPRDFQGKL-----------HV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLL 358
            I G + P +G++ MD  + D+ D    ++ GD   IFG   +    +A A+GT NY+++
Sbjct: 287 GIGGKLYPQVGRVCMDQIVVDLGDNEYGVQQGDEAIIFGVGGMSATALADAAGTINYEVI 346

Query: 359 VRIGTRYAKFY 369
            R   R  + Y
Sbjct: 347 CRPTGRSVRKY 357


>gi|220913351|ref|YP_002488660.1| alanine racemase [Arthrobacter chlorophenolicus A6]
 gi|219860229|gb|ACL40571.1| alanine racemase [Arthrobacter chlorophenolicus A6]
          Length = 437

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 154/378 (40%), Gaps = 29/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL A+++N   + A +  A+  AVVK +AYG G   +A A   AG     V  + E 
Sbjct: 51  AVIDLDAIRHNVRRLAAAASPAKVMAVVKADAYGHGAVPVARAALEAGASWLGVAHISEA 110

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR     A +                  +    S        +            L+V
Sbjct: 111 LALRAAGIDAPLLAWLHTTDSNFGAAVAAGVDIGCSGWELERIVAAAREQERPARIHLKV 170

Query: 129 DTGFNRLGLSLQEALDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G +L+        +    ++ L ++  I SHLA AD+P       QL  FR  
Sbjct: 171 DTGLGRNGATLEYWDTLVGEAMEYQDQGLLRVVGIFSHLAVADEPERPETDHQLAAFRDA 230

Query: 186 ISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237
           ++  +          LA++   L  P+ HF L R G+ +YG +    ++     ++  + 
Sbjct: 231 LAVAEDAGVDAEVRHLANTPATLSRPDTHFDLVRVGLGIYGLSPFDGQTSAELGLRPAMA 290

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
              ++   +   AG+ VSYG   +    S + +  +GYADG P             V  G
Sbjct: 291 LRTKVSQCKVVPAGQGVSYGLHYRTAAASTLGLIPLGYADGIPR------------VATG 338

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGP----DIKLDDVALASG 351
           G   + G   P++G+I MD  + D+   +     +G   ++FG         DD A A+G
Sbjct: 339 GPVRVAGTTYPVVGRIAMDQMVIDLGQGVQGAALLGAEAELFGSGADGGPTADDWARAAG 398

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY+++ RI  R  + +
Sbjct: 399 TINYEIVTRISPRVPRRF 416


>gi|240851017|ref|YP_002972417.1| alanine racemase [Bartonella grahamii as4aup]
 gi|240268140|gb|ACS51728.1| alanine racemase [Bartonella grahamii as4aup]
          Length = 371

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 193/365 (52%), Gaps = 14/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID++A+  N+ ++       + +AVVK NAYGLG  KIAPALY AG + FFV  + E 
Sbjct: 18  ATIDVSAIVANYITLAKRVAPTQCSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIIEA 77

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++L+   P    I VL G+    E+ +  + ++PV++S   +  + K+        P  +
Sbjct: 78  LQLKSILPSHVTIAVLNGLPHLAEEFVAQSGIVPVLNSWSAIENWQKICQKKDKKFPAIV 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E      +    +  ++  I+SHL+  +D +   N  QL  F+T++
Sbjct: 138 QIDTHMNRLGLDQKELQKLIKHPTIFEKAEIKYILSHLSNGEDDTHPSNYAQLATFKTVL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     + S A+S GI LG +++F L RPGI+LYG   +     P++ V+  EA++I  R
Sbjct: 198 AQLPACKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPRGKHPSPLKPVLKLEAQVIQNR 257

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YG      R S +A  +IGYADG+   LS             G  +  GY 
Sbjct: 258 VVDIGTPVGYGESFITNRPSTLATISIGYADGWLRALSN-----------KGTVYFNGYK 306

Query: 307 VPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +P++G+++MD  + D TD     + GD++++ GP   L+ V++ + T   ++L  +G+RY
Sbjct: 307 LPMVGRVSMDSIIVDTTDLDQKPQTGDWVELIGPHQTLERVSIDADTLPNEILTSLGSRY 366

Query: 366 AKFYT 370
              YT
Sbjct: 367 KYIYT 371


>gi|261855604|ref|YP_003262887.1| alanine racemase [Halothiobacillus neapolitanus c2]
 gi|261836073|gb|ACX95840.1| alanine racemase [Halothiobacillus neapolitanus c2]
          Length = 378

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 173/369 (46%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               L IDL AL++N      ++   +  A VK +AYG G   +A AL +  V  F V +
Sbjct: 19  RRPELTIDLAALRHNAAVARQVAKGRKLLAAVKADAYGHGMATVARALRD-RVDGFMVAT 77

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHP 123
           + EG  LRL     R+ VL G+    E        L PV     Q+     +   G+   
Sbjct: 78  LGEGEALRLAGITQRVLVLQGVMSQAEARRAARRFLEPVFHHASQIDAVGTV-GFGLPLT 136

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182
             L++DTG +R+G + +E           +  + +  +++H ACAD+P       Q+  F
Sbjct: 137 AWLKLDTGMHRVGFTPEEFAQAYARLSALRGVRPNPNVLTHFACADEPDRAPTDDQITLF 196

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAE 239
           +   +   G E SL +S+G+L  P+      RPGI LYGG   I        ++ V+T  
Sbjct: 197 KQTTTECSG-ETSLCNSAGLLAYPHAGGDWVRPGIMLYGGNPFITGTAADWDLKPVMTLT 255

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            ++I +R+  AGE V YGG+        + V +IGY DGYP                G  
Sbjct: 256 TQLIAVREVQAGERVGYGGKFTAPATMPVGVVSIGYGDGYPRHAPN-----------GTP 304

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MD+   D+   +  +VGD +Q +G  + +D+VA A+GT +Y+L+ 
Sbjct: 305 IVVNGQRSQVIGRVSMDLVTVDL-RGIQAQVGDTVQCWGDQLPIDEVAQAAGTISYELMC 363

Query: 360 RIGTRYAKF 368
           ++  R  + 
Sbjct: 364 QMSGRVTRR 372


>gi|302326590|gb|ADL25791.1| alanine racemase [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 434

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 101/378 (26%), Positives = 168/378 (44%), Gaps = 25/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               ++I+L AL NN   +   +  + +    VK ++YG G    + A    G     V 
Sbjct: 42  RPNWIEINLDALCNNIQFIRSQIPASTKILLPVKADSYGHGSLACSFAAKFGGADYLGVA 101

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
            + EG+ LR Y     I VL    P       +  L   I+ +     + + +   G   
Sbjct: 102 HISEGMLLRQYGMDLPILVLGPCTPSDFAYFVEYQLTAAITDIRTAMAFDQFLGETGTEC 161

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L +DTG NR G   ++  +    + + K  +   + +HLA AD P +    +Q++RF
Sbjct: 162 KAHLAIDTGMNRYGFDAED-FNNIRAALSLKHLKFEGMFTHLATADMPGNPKTEIQIQRF 220

Query: 183 RTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTV 235
             L+     +G+       +SS+G L  P  HF + RPG++LYG      I  + P++ V
Sbjct: 221 TRLVDVLEAEGLRPEICHCSSSAGTLTHPESHFDMVRPGLTLYGYNCMGAIPTTLPIKPV 280

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  ++ I  +     GE VSYGG     + + IA  AIGY DGY               +
Sbjct: 281 MKIKSTIRHVHDVKPGETVSYGGYWAAQQLTRIATIAIGYGDGYLRG-----------EY 329

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
             G  FI+G + PILG++ MD TM D++    ++VG+ + +   +    I ++ VA    
Sbjct: 330 NKGFVFIRGQLCPILGRVCMDATMVDVSHIPDVQVGETVDVVNGELDFRISMESVAEEHH 389

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++  R+  R  + Y
Sbjct: 390 TIPYEITSRVARRLYRKY 407


>gi|255323995|ref|ZP_05365121.1| alanine racemase [Corynebacterium tuberculostearicum SK141]
 gi|255299175|gb|EET78466.1| alanine racemase [Corynebacterium tuberculostearicum SK141]
          Length = 368

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 161/372 (43%), Gaps = 22/372 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            L+  IDL+A+ +N   +        +   VVK +AYG G  K+ P +  AG   F V +
Sbjct: 4   MLKTTIDLSAIAHNVRLIKEKVGPEVKLMCVVKADAYGHGAAKVVPVMARAGADCFGVAT 63

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + E V LR     A I           +      +   ++S+ Q     KL+        
Sbjct: 64  LREAVNLRRAGVDAPIVAWIWQTDEILEEALANGIEVAVNSLEQ---AHKLVKADFPAEV 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++V+TG +R G+   +  +      +    ++  ++SH ACAD+P +  N  Q E FRT
Sbjct: 121 YVKVETGMHRSGVDEGDWAETFKVLRDAPHIKVLGLMSHFACADEPDNPHNDAQEEAFRT 180

Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            +   + I        LA+S  +L  P+ +F+  R G + YG      + H ++  +T  
Sbjct: 181 ALQLAREIGLECPVNHLANSPAVLTRPSSYFEQVRVGAACYGLEPIEGREHGLRPAMTWS 240

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            +I  ++   AGE   YG   K  +   +A    GYADG P    G              
Sbjct: 241 GQIFNVKPIQAGEGTCYGLTWKADKPGFLATVDCGYADGLPRGYQGDL-----------H 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357
             I G++ P +G+I MD  + D+ ++   ++ G    IFG   +   D+A A+GT NY++
Sbjct: 290 VGIGGHLYPQVGRICMDQIVVDLGENPHGVDTGQDAVIFGNGGVSATDLAAAAGTINYEV 349

Query: 358 LVRIGTRYAKFY 369
           +     R  + Y
Sbjct: 350 VCLPDGRTEREY 361


>gi|58336608|ref|YP_193193.1| ala racemase [Lactobacillus acidophilus NCFM]
 gi|227903165|ref|ZP_04020970.1| ala racemase [Lactobacillus acidophilus ATCC 4796]
 gi|81311540|sp|Q5FMB2|ALR_LACAC RecName: Full=Alanine racemase
 gi|58253925|gb|AAV42162.1| ala racemase [Lactobacillus acidophilus NCFM]
 gi|227868970|gb|EEJ76391.1| ala racemase [Lactobacillus acidophilus ATCC 4796]
          Length = 376

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 154/382 (40%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A++ N  + M  L    +  AVVK NAYG G  ++A      G   F V
Sbjct: 6   HRPAAVKVNLGAIRRNLENEMKHLDPGQKMLAVVKANAYGHGAVEVAKVAEEVGAAGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++EG++LR       I VL  + P    I    N+   + +   L    K L    + 
Sbjct: 66  AVLDEGLQLRHADIVKPILVLGVVSPKYAPIAAVNNISLTVPNFEWLKEAEKYLAKENLQ 125

Query: 122 HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G +   E ++      N     +  + +H A AD         QLE
Sbjct: 126 LKIHLGIDSGMGRIGFNEDDEFIEANKFLENNDQFFVEGMFAHFASADSADESYFEHQLE 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------INKSHP 231
           +F  + S    K     +++++  +   N    L R GI +YG           +N    
Sbjct: 186 KFNHMKSLLTVKPKWIHVSNTAASIFHKNIKSDLVRFGIGIYGLNPSSNPASADLNPDIK 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++ E+ +  ++    G+ VSYG      +D++I    +GYADG+     G      
Sbjct: 246 LEPALSFESELTHVKTIHKGDGVSYGSTFVADKDTIIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVA 347
                  K  +     PI+G+I MD  M ++ + + +  G  + I   +      +   A
Sbjct: 301 -------KVKVGDKYCPIVGRICMDQFMVELPEKMPV--GTKVVIISNNPDDPNNIKAAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++   +  R  + Y
Sbjct: 352 DYVNTIHYEVACLLNDRLPRIY 373


>gi|325696971|gb|EGD38858.1| alanine racemase [Streptococcus sanguinis SK160]
          Length = 369

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEKDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGTVLKLPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  S  +  G  + + G      I + DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITVTDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|325954628|ref|YP_004238288.1| alanine racemase [Weeksella virosa DSM 16922]
 gi|323437246|gb|ADX67710.1| Alanine racemase [Weeksella virosa DSM 16922]
          Length = 824

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 104/371 (28%), Positives = 158/371 (42%), Gaps = 22/371 (5%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L  L++N  +  +L     +  A+VK N+YG+G  +IA  L    V    V   +E
Sbjct: 463 LEINLEHLEHNIQTYRSLLKPETKIMAMVKANSYGIGSFEIANVLQQMKVNFLGVAIADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHP--Y 124
           G +LR       I V+          + D  L P I +      F  KL    +S P   
Sbjct: 523 GKELRKAGISTPIIVMNP-EQHSYATVIDYQLEPEIYTARVLQLFLQKLQEKQISQPFPI 581

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFR 183
            ++++TG NRLG    +  +      +  L  +  I SHLA AD P        Q   F 
Sbjct: 582 HIKLETGMNRLGFKPNQLDELIEILRSTNLVYVRSIFSHLATADIPTEKDYAQQQFGVFN 641

Query: 184 T----LISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +    +           + +S GI+  P + + + R GI +YG  +  +    ++ VV  
Sbjct: 642 SSYHYITDKIGYYPIKHILNSPGIVAYPQHQYDMVRLGIGMYGYCEYSDFMQKLENVVQF 701

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I  I +   GE VSYG +    R S IA   +GYADG   +L           +   
Sbjct: 702 KTVISQINEIEKGETVSYGRRFTAERHSRIATLPVGYADGIRRSLG----------YGNA 751

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           K  I G +   +G I MDM M D+TD    + GD + IFG +  L   A    T  Y++L
Sbjct: 752 KVNINGQLAATVGTICMDMMMVDVTDI-DCKAGDEVIIFGENPSLSKFAEWMQTIPYEVL 810

Query: 359 VRIGTRYAKFY 369
             I +R  + Y
Sbjct: 811 TSISSRVQRVY 821


>gi|260549412|ref|ZP_05823631.1| alanine racemase 1 [Acinetobacter sp. RUH2624]
 gi|260407521|gb|EEX00995.1| alanine racemase 1 [Acinetobacter sp. RUH2624]
          Length = 356

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 99/363 (27%), Positives = 171/363 (47%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 8   IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R    +  + ++ G+    E  +  +     VI    Q  +  K             ++
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKNPEVIEIIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEARIIL 244
             + + AS  +S+ I   P  +F   RPGI LYG +   +K+      + V+T  A +I 
Sbjct: 183 ACEPVLASCCNSAAIFKWPEMNFDYVRPGIMLYGASPFADKTVHELDLKPVMTFTAEVIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP                     I G
Sbjct: 243 LNHIQAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRA-----------YVKQNFVAIDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ TR
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSTR 350

Query: 365 YAK 367
             +
Sbjct: 351 PVR 353


>gi|124024027|ref|YP_001018334.1| alanine racemase [Prochlorococcus marinus str. MIT 9303]
 gi|123964313|gb|ABM79069.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9303]
          Length = 398

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 174/381 (45%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++++  A++ N  S+   L  +    AVVK + YG G   +A A    G +   V
Sbjct: 26  RQRAWVEVNPAAVEANCRSLRRHLCESCALMAVVKADGYGHGAVTVARAALQGGAKSLGV 85

Query: 63  TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
            +++EG++LR     A + VL    H    K      L+P +SS+ ++     L    G 
Sbjct: 86  ATLQEGIELRQAGHNAPVLVLGNLTHSEDLKACLHWQLMPTLSSMREVLLCQNLADGSGR 145

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP----SSHVNS 176
                L++DTG  RLG  L+EA        +    +L  I SHLA AD      ++ V  
Sbjct: 146 QFRIQLKIDTGMTRLGCELKEAPRLVEAIDHLNQLELKGIYSHLALADGDLQGEAAMVTD 205

Query: 177 VQLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230
            Q + F  ++        G    LA+S+G L     H+ + R G++LYG +   ++    
Sbjct: 206 QQQQHFEAVLRTLPEQHNGFMRHLANSAGTLRDRGLHYDMVRVGLALYGHSPNLQLQGKV 265

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q  ++ +AR+ LIR   AG  VSYG +    R S +AV  IGYADG   +LSG  S  
Sbjct: 266 DLQPALSVKARVTLIRDVPAGVGVSYGHRFTTRRPSRLAVVGIGYADGVSRSLSGQISAI 325

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
           +           +G ++P +G ITMD  + D T+   +EVG  + + G D    I     
Sbjct: 326 A-----------EGQLLPQVGAITMDQLVLDATNHPDLEVGSIVTLLGQDGDACITPQQW 374

Query: 347 ALASGTTNYDLLVRIGTRYAK 367
           +  SG+  +++L     R  +
Sbjct: 375 SDLSGSIPWEVLCSFKHRLPR 395


>gi|323487115|ref|ZP_08092423.1| hypothetical protein HMPREF9474_04174 [Clostridium symbiosum
           WAL-14163]
 gi|323694622|ref|ZP_08108788.1| alanine racemase [Clostridium symbiosum WAL-14673]
 gi|323399616|gb|EGA92006.1| hypothetical protein HMPREF9474_04174 [Clostridium symbiosum
           WAL-14163]
 gi|323501390|gb|EGB17286.1| alanine racemase [Clostridium symbiosum WAL-14673]
          Length = 393

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 162/379 (42%), Gaps = 26/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             +  +I+L  +  N  +M A L        VVK + YG G   +A A  +  V  + V 
Sbjct: 6   SRVYAEINLDNIIKNMETMAAGLPSGTGIIGVVKTDGYGHGAVPVAKA-IDPFVCGYAVA 64

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           +VEEG+ LR +     + +L   H    K + D ++ P +    +    SK  +  G + 
Sbjct: 65  AVEEGIILRKHKITKPVLILGSTHERYFKELLDYDIRPALYEYSKAEKLSKTAVKEGKTA 124

Query: 123 PYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              + +DTG +R+G    EA +            ++  + +H + AD+       +Q  R
Sbjct: 125 KIHIALDTGMSRIGFQPGEASVREVERIHTLPGIRIEGLFTHFSKADESDKDFTELQYRR 184

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQT 234
           +       K  GIE      A+S+ I+  P       R GIS+YG   +D++N+  P+  
Sbjct: 185 YMEFNDALKQRGIEIPVRHCANSAAIMDLPQMGLDAVRAGISMYGIYPSDEVNREMPLYP 244

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +  ++    G  VSYGG     R   IA  + GY DGYP +LSG         
Sbjct: 245 AMEIRSFVTCVKDIEPGTSVSYGGTFTAKRRMRIATISAGYGDGYPRSLSG--------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I+G   PILG++ MD  M D+TD       D   + G D    + ++ +A   
Sbjct: 296 --KGYVLIRGRRAPILGRVCMDQFMVDVTDIPGAAEEDRATLAGRDRDEMLSMERLADLC 353

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           G   Y++   +G R  + Y
Sbjct: 354 GGFRYEIPCVLGKRVPRVY 372


>gi|312113724|ref|YP_004011320.1| alanine racemase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218853|gb|ADP70221.1| alanine racemase [Rhodomicrobium vannielii ATCC 17100]
          Length = 384

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 127/365 (34%), Positives = 193/365 (52%), Gaps = 9/365 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L I L AL+ N+      S  A TAAVVK NAYGLG + +  AL     + FFV +++E 
Sbjct: 24  LVIRLPALRRNYRRAAEASLKAETAAVVKANAYGLGIQPVLTALQKETARTFFVATLDEA 83

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
           + LR +   A I+ L G+ PG   +  D  L PV++S+ ++  +S          P A+Q
Sbjct: 84  LALRTFANDATIYTLNGLMPGTSAVYRDARLRPVLNSLAEVEEWSAYCREHEARLPAAIQ 143

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  R+GL  + A          +  + ++++SHL  AD+P   +N VQ +RF  + S
Sbjct: 144 FDTGMCRVGLEPEAADALAEKPELLQPFRPAVLMSHLVRADEPMHPLNEVQFKRFEAVTS 203

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + GI  SL +S+G LL   YH  L RPGI++YGG  +  +    + VV    RI+ +R 
Sbjct: 204 LFPGIAKSLVNSAGCLLRRKYHLDLARPGIAIYGGNPQKVEPSQFEPVVWLFGRIVQVRH 263

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G  V YGG + L RDS IA   +GYADGY   +S  D++      +G          
Sbjct: 264 GEKGFTVGYGGTETLRRDSRIATVGVGYADGYFRGVSSSDAKPGAVGHIGEHAL------ 317

Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++MD+T FD TD     +  G ++++ G    +DD+A  +GT  Y++L  +G RY
Sbjct: 318 PLIGRVSMDLTTFDATDVPEALVHRGGFVELLGEKTTVDDLARHAGTIGYEVLTSLGRRY 377

Query: 366 AKFYT 370
            + Y 
Sbjct: 378 HRVYV 382


>gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
 gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
          Length = 825

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 98/371 (26%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + +  + +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 466 LEVNLNAVVKNLNHYRSFMKPHTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125
           GV LR     + I ++        K +FD +L P + S   L               P  
Sbjct: 526 GVTLRKNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLDALVKEAEKEGITGFPVH 584

Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG    ++  +       +       + SH   AD       ++ Q E F+
Sbjct: 585 IKLDTGMHRLGFDPHKDMDELIRRLKRQNAIIPRSVFSHFVGADSDDFDTFSAQQFELFK 644

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P+    + R G+ LYG   + NK      V T 
Sbjct: 645 LGADKLQAAFDHKILFHMDNSAGIEHFPDRQMDMCRLGLGLYGINSRNNKIINN--VSTL 702

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ I +  AGE + Y  +  L RDSLIA   IGYADG    LS             G
Sbjct: 703 KTTILQIHQLPAGESIGYSRKTYLERDSLIAAIPIGYADGLDRRLSNRR----------G 752

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+TD    + GD ++IFG  + +  ++ A  T  Y++L
Sbjct: 753 YCLVNGQKAEYVGNICMDVAMIDVTDI-DCKEGDSVEIFGDHLPVTVLSDAIDTIPYEVL 811

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 812 TGISNRVKRVY 822


>gi|161870495|ref|YP_001599667.1| alanine racemase [Neisseria meningitidis 053442]
 gi|161596048|gb|ABX73708.1| alanine racemase [Neisseria meningitidis 053442]
          Length = 422

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 164/363 (45%), Gaps = 20/363 (5%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
            NEF+R   ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     
Sbjct: 67  RNEFMRPLNVQIRLGNLRHNYQILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADG 124

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSC 118
           F V +++EG++LR       I +L G+    E    +  +L P + +  QL         
Sbjct: 125 FAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHW 183

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L++D+G +R G    +           +     +  SH +CAD+P S +  +Q
Sbjct: 184 KKPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQ 243

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+  
Sbjct: 244 MEAFDLGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGGDDRLKPVMRL 302

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             RI   R       + YG     ++ + + + A GYADGYP                  
Sbjct: 303 STRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNS 351

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +  ++G+++MDM   ++ D+    +G  ++++G  I ++ VA A+GT  Y+L+
Sbjct: 352 PVAVDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTININTVAEAAGTIPYELM 410

Query: 359 VRI 361
             I
Sbjct: 411 CNI 413


>gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
 gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
          Length = 821

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 149/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLNALVDNLNYYRSKLKSETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR       I ++        K +FD  L P + S   L    K        + P  
Sbjct: 523 GSDLRKAGITCSIMIMNP-ELTAFKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + +E  +       +       + SHL  +D          Q+E F  
Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +++GI   P+  F + R GI LYG     N+      V T +
Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPDAQFDMVRLGIGLYGIDPFTNQIINN--VSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I +    E V Y  +  L RDS IA   IGYADG    L                
Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G I MD+ M D+TD    + GD   IFG D+ +  ++    T  Y++L 
Sbjct: 750 CLVNGQKASYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 809 SVSNRVKRVY 818


>gi|257792515|ref|YP_003183121.1| alanine racemase [Eggerthella lenta DSM 2243]
 gi|257476412|gb|ACV56732.1| alanine racemase [Eggerthella lenta DSM 2243]
          Length = 441

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 100/387 (25%), Positives = 161/387 (41%), Gaps = 31/387 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
             +   +IDL A+++N  ++     N  R  AVVK + YG G  + A    N+G     V
Sbjct: 66  RRWSWTEIDLNAIRHNTSAVKQRIDNGVRLMAVVKADGYGHGAVRCAKTALNSGADYLGV 125

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVS 121
            +V E ++LR     A I VL         ++    ++P + +    + +     + GV 
Sbjct: 126 ATVNEAIELREALVNAPILVLSQPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADAYGVR 185

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            PY L V+TG NR+G+   E ++F       +   L    +H A AD   +    +Q++R
Sbjct: 186 APYHLAVNTGMNRIGVRHDEVVEFMGQVSFHRALDLVGTFTHFATADSAETLDFQIQVKR 245

Query: 182 FRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234
           F   ++  +  G+       A+S+  +  P+  F + R GI++YG            +  
Sbjct: 246 FIEAVTALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHPSGVTRPMIDLHP 305

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  ARI  +R     E VSYG   +      I    +GYADG    LSG         
Sbjct: 306 AMSVHARITDVRTVPMSEGVSYGMNYRSPGSVKICTVPVGYADGLRRGLSGR-------- 357

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGPD----IKL 343
                  +KG     +G I MD  MF++          L   +GD + + G +    I L
Sbjct: 358 ---TDVILKGQRCHQVGNICMDQCMFEVDLRVYGSRRRLDPMIGDEVLLVGREGDSVITL 414

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
           DD+A   GT NY+L      R  + Y 
Sbjct: 415 DDMANTLGTINYELACGFSLRMPRVYV 441


>gi|206900696|ref|YP_002251207.1| alanine racemase [Dictyoglomus thermophilum H-6-12]
 gi|206739799|gb|ACI18857.1| alanine racemase [Dictyoglomus thermophilum H-6-12]
          Length = 378

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 161/371 (43%), Gaps = 28/371 (7%)

Query: 10  KIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           +IDL+AL NN   +    G      AVVK +AYG G + ++  L   A V  F V  ++E
Sbjct: 9   EIDLSALLNNIKVIREKIGKKVDIIAVVKADAYGHGAKIVSLFLQKYANVNSFAVAHIDE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           G+ LR      +I VL            +  L PVIS +  L    K     G      L
Sbjct: 69  GIFLRKIGITKKILVLSPQLKSSIPYYLEYQLTPVISDIEFLEDLGKFSHSKGKELKIHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             DTG  R GL   E     +         L  I SHL+ +++     N  Q + F  + 
Sbjct: 129 MFDTGMGREGLLPSEVDKVLNVMEKYPGLILEGISSHLSNSENKKDPYNIFQKKLFYEIY 188

Query: 187 SHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
             +K  E     +++ GI   P +HF   RPGISLYG  DK      ++ V+  +A+I L
Sbjct: 189 DKFKDEELVFHFSNTGGIFNFPEFHFNAVRPGISLYGYGDKA-----LKPVMEVKAKITL 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           I+    G  + YG      +++ IA+  +GYADGY   LS             G+  + G
Sbjct: 244 IKDLPEGWGIGYGHTFMTEKNTKIALVPLGYADGYRRDLSN-----------KGRVILNG 292

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVR 360
               I+G+I+MD    D+TD    + GD + I G +    I   ++A+ S T  Y++L  
Sbjct: 293 EYCKIVGRISMDQFTIDVTDK-EAKKGDVVTILGMEKDKIIDAQELAIISNTIPYEILTG 351

Query: 361 IG--TRYAKFY 369
            G   R    Y
Sbjct: 352 FGSAKRLKSVY 362


>gi|204927774|ref|ZP_03218975.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204323116|gb|EDZ08312.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 356

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 164/370 (44%), Gaps = 28/370 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGAILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   +            +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERVQTVWQQLRTMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYE 342

Query: 357 LLVRIGTRYA 366
           LL  +  R  
Sbjct: 343 LLCAVAPRVP 352


>gi|262372192|ref|ZP_06065471.1| alanine racemase [Acinetobacter junii SH205]
 gi|262312217|gb|EEY93302.1| alanine racemase [Acinetobacter junii SH205]
          Length = 356

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 103/363 (28%), Positives = 172/363 (47%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ +++  ++VK NAYG G +    AL       F V  +EE + 
Sbjct: 8   IDSEALQYNLNRVKQLAPHSQIVSMVKANAYGHGVQDCLAALNA--TDAFGVACLEEALA 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R       I ++ G+    E + +    L  V+    Q+ +  +       +     ++
Sbjct: 66  IRRLGYTQPITLIEGVFTEDEMEDVIQQKLECVVHRHEQVEWLIQNKEAYNALGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG  + E +   H   +     +  +  H A A D    +N  Q+++F  + +
Sbjct: 126 LNSGMNRLGFKINEIIAVIHQLKSLNFNCVLTM--HFANA-DVDHPLNEQQIQQFLEVKN 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIIL 244
             + I AS  +S+ I   PN HF   RPGI LYG T   +K      ++ V++ EA II 
Sbjct: 183 ACEPILASCCNSAAIYKYPNLHFDYVRPGIMLYGATPFADKDVNELDLKPVMSFEAEIIT 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           + +  AGE V YG     T    IA+ +IGY DGYP                     I  
Sbjct: 243 LNQIQAGESVGYGSTFTATNSMQIAIVSIGYGDGYPRA-----------YVKPNYVAIDK 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D T+ L ++VG  ++++G    +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QLTPVIGRVSMDMIAIDTTN-LQVKVGTKVELWGKTRLVDDVANANGTIGYELLCRLSNR 350

Query: 365 YAK 367
             +
Sbjct: 351 PQR 353


>gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
 gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
          Length = 842

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 152/370 (41%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +     L    +   +VK +AYG G  +IA  L    V    V   +E
Sbjct: 484 LEVNLGAMIANLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 543

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G +LR     A I ++        K +FD  L P + S   L    K        + P  
Sbjct: 544 GSELRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 602

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + ++         ++       + SHL  +D          Q+E F  
Sbjct: 603 IKLDTGMHRLGFAPEDMPRLIERLKSQNAVIARSVFSHLVGSDASQFDAFTRGQIEMFEA 662

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +S+GI   P   F + R GI LYG +   N       V T +
Sbjct: 663 ASMQLQAAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGISPIDNTIINN--VSTLK 720

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ IR+    + V Y  +  L RDS IA   IGYADG    L                
Sbjct: 721 TTILQIREVPEEDTVGYSRKGHLKRDSRIAALPIGYADGLNRHLGNGH----------AY 770

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD ++IFG  + +  ++    T  Y++L 
Sbjct: 771 CLVNGQRAPYVGNICMDVCMIDVTDI-ECKEGDIVEIFGDHLPITVLSDVLETIPYEVLT 829

Query: 360 RIGTRYAKFY 369
            + TR  + Y
Sbjct: 830 SVSTRVKRVY 839


>gi|167897553|ref|ZP_02484955.1| alanine racemase [Burkholderia pseudomallei 7894]
 gi|167922125|ref|ZP_02509216.1| alanine racemase [Burkholderia pseudomallei BCC215]
          Length = 374

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 97/367 (26%), Positives = 156/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  
Sbjct: 3   RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    QL   +   +      
Sbjct: 61  LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHCDEQLKLLTAAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANA---DEGEIDWQMSVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG      R+  I V A GYADGYP                G  
Sbjct: 236 SRIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|269214143|ref|ZP_05983692.2| alanine racemase [Neisseria cinerea ATCC 14685]
 gi|269144442|gb|EEZ70860.1| alanine racemase [Neisseria cinerea ATCC 14685]
          Length = 422

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 164/363 (45%), Gaps = 20/363 (5%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
            NEF+R   ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     
Sbjct: 67  RNEFMRPLNVQIRLGNLRHNYQILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADG 124

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSC 118
           F V +++EG+KLR       I +L G+    E    +  +L P + +  QL         
Sbjct: 125 FAVATIDEGIKLRESGITNPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHW 183

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L++D+G +R G    +           +     +  SH +CAD+P S +  +Q
Sbjct: 184 KKPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQ 243

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+  
Sbjct: 244 MEAFDLGTKGLEG-EESLANSAAILNIPEARRNWGRAGLALYGISPFGGSDDRLKPVMRL 302

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             RI   R       + YG     ++ + + + A GYADGYP                  
Sbjct: 303 STRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PTNT 351

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+
Sbjct: 352 PVAVDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELM 410

Query: 359 VRI 361
             I
Sbjct: 411 CNI 413


>gi|304392032|ref|ZP_07373974.1| alanine racemase [Ahrensia sp. R2A130]
 gi|303296261|gb|EFL90619.1| alanine racemase [Ahrensia sp. R2A130]
          Length = 378

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 135/363 (37%), Positives = 192/363 (52%), Gaps = 4/363 (1%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+ IDL ALK N+  +  L+  A   AVVK N YG G E + PAL++AG + FFV    E
Sbjct: 12  RVTIDLDALKANYTHLAKLAAPAECGAVVKANGYGCGIEVVVPALWDAGCRTFFVAVSSE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           G+++    P AR F+L G+  G E  + D  LIP + SV Q+  ++      G   P A+
Sbjct: 72  GLRVMKTAPDARCFILNGLFTGAENALADAGLIPCLGSVTQIENWAATAKQRGTPLPCAI 131

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            +D+G NRLGLS  E               + L ++H ACADD        Q ERF    
Sbjct: 132 HMDSGMNRLGLSYDELARTVEQPHLMDHLDVQLFMTHYACADDIGHPQTEAQRERFLQGA 191

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
               G+  S A+S+  L   ++ F L RPGI+LYGG    +  +PM+ VVT E R++  R
Sbjct: 192 DLLPGVPRSAANSAADLQATDHTFDLARPGIALYGGEALNDVDNPMRPVVTLEGRVVQTR 251

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YG  + +TR + +A  + GYADGY    S         V        KG+ 
Sbjct: 252 WVERGGAVGYGASETMTRRTRLAYVSTGYADGYHRAASNFGVPMR-FVAPAAVTHYKGHT 310

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +  +G+I+MD+  FD+TD     I  GD+I++FG ++ +DDVA A+GT  Y+LL  +G R
Sbjct: 311 LKGVGRISMDLAAFDVTDMPDDAIGEGDWIELFGNNVPVDDVARAAGTIGYELLTGLGAR 370

Query: 365 YAK 367
           YA+
Sbjct: 371 YAR 373


>gi|325525874|gb|EGD03590.1| alanine racemase [Burkholderia sp. TJI49]
          Length = 344

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 92/359 (25%), Positives = 154/359 (42%), Gaps = 22/359 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +G ++  AVVK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRYAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + A   +    + QL  F 
Sbjct: 120 VQLKMNSGMNRLGYAPEKYRAAWERARACPGIGQITLMTHFSDA--DNERGVAEQLATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239
              ++  G   SLA+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAANIAGA-RSLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ + YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA   GT  Y+L+
Sbjct: 286 VIVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALSIDDVARHCGTIGYELM 344


>gi|292488465|ref|YP_003531347.1| alanine racemase [Erwinia amylovora CFBP1430]
 gi|292899653|ref|YP_003539022.1| alanine racemase [Erwinia amylovora ATCC 49946]
 gi|291199501|emb|CBJ46618.1| Alanine racemase, catabolic [Erwinia amylovora ATCC 49946]
 gi|291553894|emb|CBA20939.1| Alanine racemase [Erwinia amylovora CFBP1430]
 gi|312172607|emb|CBX80863.1| Alanine racemase [Erwinia amylovora ATCC BAA-2158]
          Length = 356

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 97/368 (26%), Positives = 156/368 (42%), Gaps = 22/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   I+  AL+ N       +  AR  +VVK NAYG G E +  +L       F + 
Sbjct: 2   SRPIVATINRAALRQNLAIARHSAAGARLWSVVKANAYGHGIEHVWQSLTE--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G   P    ++    L   + S  Q+   ++        
Sbjct: 60  NLEEAILLRECGWKKPILLLEGFFHPDDLPLLDRYRLTTSVHSNWQINALAQA-KLSAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++++G NRLG                +      +++H A A+          L+R 
Sbjct: 119 DIYLKMNSGMNRLGFQPDRVHSVWQKLRALENVGELTLMAHFADAETTEGVAGP--LKRI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SLA+S+  L  P  H+   RPGI LYG +            +Q V+T 
Sbjct: 177 EQAAEGLEC-PRSLANSAATLWHPQTHYDWVRPGIILYGASPSGQWRDIAGSGLQPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II +++  AG  V YGG+ +      I V A GYADGYP                G 
Sbjct: 236 TSEIIAVQQLAAGSSVGYGGRYRANCSQRIGVVACGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    I+G ++MDM   D+T      +G  ++++G ++K+DDVA ASGT  Y+L+
Sbjct: 285 PIRVDGEKTQIVGAVSMDMITVDLTPCPRAGIGSQVELWGDNVKIDDVAAASGTVGYELM 344

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 345 CALAPRVP 352


>gi|261417347|ref|YP_003251030.1| alanine racemase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373803|gb|ACX76548.1| alanine racemase [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 407

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 101/378 (26%), Positives = 168/378 (44%), Gaps = 25/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               ++I+L AL NN   +   +  + +    VK ++YG G    + A    G     V 
Sbjct: 15  RPNWIEINLDALCNNIQFIRSQIPASTKILLPVKADSYGHGSLACSFAAKFGGADYLGVA 74

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
            + EG+ LR Y     I VL    P       +  L   I+ +     + + +   G   
Sbjct: 75  HISEGMLLRQYGMDLPILVLGPCTPSDFAYFVEYQLTAAITDIRTAMAFDQFLGETGTEC 134

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L +DTG NR G   ++  +    + + K  +   + +HLA AD P +    +Q++RF
Sbjct: 135 KAHLAIDTGMNRYGFDAED-FNNIRAALSLKHLKFEGMFTHLATADMPGNPKTEIQIQRF 193

Query: 183 RTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTV 235
             L+     +G+       +SS+G L  P  HF + RPG++LYG      I  + P++ V
Sbjct: 194 TRLVDVLEAEGLRPEICHCSSSAGTLTHPESHFDMVRPGLTLYGYNCMGAIPTTLPIKPV 253

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  ++ I  +     GE VSYGG     + + IA  AIGY DGY               +
Sbjct: 254 MKIKSTIRHVHDVKPGETVSYGGYWAAQQLTRIATIAIGYGDGYLRG-----------EY 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
             G  FI+G + PILG++ MD TM D++    ++VG+ + +   +    I ++ VA    
Sbjct: 303 NKGFVFIRGQLCPILGRVCMDATMVDVSHIPDVQVGETVDVVNGELDFRISMESVAEEHH 362

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++  R+  R  + Y
Sbjct: 363 TIPYEITSRVARRLYRKY 380


>gi|333031463|ref|ZP_08459524.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
 gi|332742060|gb|EGJ72542.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
          Length = 833

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 155/370 (41%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL AL +N +     L    +   ++K  AYG G  ++A  L +  V    V   +E
Sbjct: 475 LEVDLNALIDNLNYYRDQLQPKTKIMCMIKAAAYGAGSYEVAKTLQDRKVDYLGVAVADE 534

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125
           G +LR     + I ++        K +F  +L P + S   L     +       + P  
Sbjct: 535 GAELRKVGITSSIIIMNP-EVSAFKQMFQYSLEPEVYSFHLLDSLLNAAEKEGITNFPIH 593

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFRT 184
           +++DTG +RLG    +  +  +   N+       I SHL     D        Q+  F  
Sbjct: 594 IKIDTGMHRLGFMADDMPELVNRLKNQNALIPKSIFSHLVGSDSDVFDDFTKDQISLFDK 653

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             +  +      I   + +S+GI   P  H+ + R GI LYG          ++ V T +
Sbjct: 654 AATELQAAFSHKIIRHICNSAGIERFPEAHYDMVRLGIGLYGVHPS--NKPILKNVNTLK 711

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+     E V Y  +  LTR+S IA   IGYADG    L              G 
Sbjct: 712 TTILQIKDLDKIETVGYSRKGVLTRNSRIAAIPIGYADGLNRKLGNH----------NGF 761

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G I MD++M D+TD    + GD + I+G D+  + +A   GT  Y++L 
Sbjct: 762 CLVNGQKASYIGNICMDVSMIDVTDIP-CKEGDEVIIYGNDLPAEVLAEKLGTIPYEILA 820

Query: 360 RIGTRYAKFY 369
            I TR  + Y
Sbjct: 821 NISTRVKRVY 830


>gi|153853243|ref|ZP_01994652.1| hypothetical protein DORLON_00637 [Dorea longicatena DSM 13814]
 gi|149754029|gb|EDM63960.1| hypothetical protein DORLON_00637 [Dorea longicatena DSM 13814]
          Length = 366

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 84/361 (23%), Positives = 152/361 (42%), Gaps = 26/361 (7%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
             +  + +  AV+K + YG G  +IA  L     +  + V +++E + L+    +  + V
Sbjct: 4   KNIQKDTQMMAVIKMDGYGHGAVQIAKLLEPKDYIWGYAVATLDEAILLKDACLKKPVLV 63

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLS-LQ 140
           L  I P Q   +    +   + S       S+L    G      +++DTG  RLG    +
Sbjct: 64  LGCIFPDQWDTMIRNEVRMTVYSYEMAKEVSELAEAMGCKVYVHIKLDTGMARLGFQITE 123

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI-----EAS 195
           E  +            +  + +H + +D+      + QL+++  +    K          
Sbjct: 124 ENAEEIAKISKLPNLVMEGMFTHFSKSDEADKTFTNEQLDKYLWMKEELKKRGVTFQYYH 183

Query: 196 LASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILIRKALAGE 252
            ++S+GI+     +  + R GI+ YG         +  P++  +   + +  ++    G+
Sbjct: 184 CSNSAGIIDLKEANMDIVRAGITTYGMYPSDEVEKERVPLKPAMELISHVAHVKWLTEGK 243

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            VSYGG    TR + +A   +GY DGYP +LS             G   I G   PI+G+
Sbjct: 244 PVSYGGTYVTTRPTKVATIPVGYGDGYPRSLSN-----------KGYVLIHGQKAPIIGR 292

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368
           + MD  M D+T    +E GD + IFG D    + +D +   SG  NY+ +  +  R  + 
Sbjct: 293 VCMDQFMVDVTAIEDVEFGDKVVIFGRDGKEFLSVDTLGELSGRFNYEFVCVLNKRIPRE 352

Query: 369 Y 369
           Y
Sbjct: 353 Y 353


>gi|315221233|ref|ZP_07863156.1| alanine racemase [Streptococcus anginosus F0211]
 gi|315189592|gb|EFU23284.1| alanine racemase [Streptococcus anginosus F0211]
          Length = 368

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 153/377 (40%), Gaps = 25/377 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++   +  +DL A+  N   + A   N     AVVK +AYG G   +   + +  V  F 
Sbjct: 5   NHRPTKAVVDLAAISFNIKQIAAHIPNDVEKWAVVKADAYGHGAVAVTRYIESI-VDGFC 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V++++E V+LR      +I VL         +  +  +   ++S+  +    K      S
Sbjct: 64  VSNIDEAVELRDAGITKKILVLGVSDVHAISLAIERKVTCTVASLEWIDLLLKSNIDVAS 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               +++D+G  R+G    +      +   K   Q+  I +H A AD+  +H    QL R
Sbjct: 124 LVVHIKIDSGMGRIGFRDSQDAQEAIHRLEKAGAQVEGIFTHFATADEADTHKFEAQLAR 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F+ ++   + +      ++S+  L       +  R G  +YG       +   + M+  +
Sbjct: 184 FKEILEQLETVPPIVHASNSATTLWHAETVMKAVRLGDIIYGLNPSGRTLQLPYEMKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + ++ +++  AG  V YG          I    +GYADG+   + G +         
Sbjct: 244 SLVSELVHVKQLEAGADVGYGATYTSENSQYIGTIPLGYADGWTRDMQGFN--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
                I G   PI+G+++MD     +  +    +G  +   G      I   DVA   GT
Sbjct: 295 ---VLIDGQPCPIVGRVSMDQITVRLPKAYP--IGTPVVFIGESSKKSISATDVAEKRGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  I  R  + Y
Sbjct: 350 INYEVVCLISDRVPRVY 366


>gi|194014730|ref|ZP_03053347.1| alanine racemase [Bacillus pumilus ATCC 7061]
 gi|194013756|gb|EDW23321.1| alanine racemase [Bacillus pumilus ATCC 7061]
          Length = 393

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 96/384 (25%), Positives = 170/384 (44%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + ++++L A+K N  ++ A     ++  AVVK NAYG G  ++A     +G  +  V 
Sbjct: 6   REVWIEVNLDAIKRNIEAIQAHIPRKSKIMAVVKANAYGHGSVEVARQALESGATELAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS---CGV 120
           S+EEG+ LR    +A I VL        K      +         +   +++++      
Sbjct: 66  SLEEGIVLRRAKIEAPILVLGFTPLDCVKRAAAWRIDLSGLREDWIVEANEILAEEESQR 125

Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+   +E L         +  +   I +H + AD+P      +Q 
Sbjct: 126 RLGIHVNVDTGMGRLGVRTKEELLGVVEALEKSENLRWDGIFTHFSTADEPDPDFTQLQH 185

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSH 230
             F   +   K  GI+     + +++  ++ P +   + R GI LYG       +   + 
Sbjct: 186 SIFIDFLRFLKKRGIKLPTVHMNNTAAAIVFPEFSADMIRLGIGLYGLYPSQYIESLDAV 245

Query: 231 PMQTVVTAEARIILIRK-ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            ++  ++ +ARI  +++       VSYG       D +IA   IGYADGY   LS     
Sbjct: 246 QLEPALSLKARIAFVKEMVTKPRTVSYGATYVAKPDEVIATIPIGYADGYSRALSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  +PI G++TMDMTM  + + +  + G+ + I+G     +I +D+
Sbjct: 303 --------GFMLFRGKRMPIAGRVTMDMTMISLGE-MKAKQGEEVVIYGRQKGGEISVDE 353

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY+++  +  R  +FY
Sbjct: 354 IAEMLNTINYEVIATLSRRVPRFY 377


>gi|225849897|ref|YP_002730131.1| alanine racemase [Persephonella marina EX-H1]
 gi|225644813|gb|ACO02999.1| alanine racemase [Persephonella marina EX-H1]
          Length = 359

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 111/371 (29%), Positives = 177/371 (47%), Gaps = 29/371 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVE 66
             +ID   L  N H++   S      AVVK +AYG G  +I+  L   + V+   V + E
Sbjct: 6   WAEIDSKRLIQNTHNVYNYSKKG-ILAVVKADAYGHGSVEISKILEKISYVRKLCVATAE 64

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EG +LR    +  I VL G+   +     + NL PVIS   QL     L+    S    L
Sbjct: 65  EGKELREGGIKKEILVLGGVLKEELDYFIEYNLQPVISDFDQL----YLLKDRFSGSVHL 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           + DTG +RLG  +++          K   ++  ++SH   A D    +   Q+E+F+ ++
Sbjct: 121 KFDTGMHRLGFYIEDTDRVIKYIKEKN-IKVEGLMSHFPSA-DVDPELTGHQIEKFKKIV 178

Query: 187 SHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
             +K  GI      + +S+G++   +Y     R GISLYG     N    ++TV++ +++
Sbjct: 179 DIFKNEGINPRFIHIQNSAGLVYRCDY-CNCVRVGISLYGEKPSDNFPLNIKTVMSVKSK 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II ++    G++VSYGG  K  +D  I + + GYADG P  LS             G   
Sbjct: 238 IISVKGIKKGDMVSYGGSFKADKDMKIGIVSFGYADGLPRELSNR-----------GFFL 286

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDL 357
           +K     ILG +TMDMT+ D++    ++VGD + I G     +I  +D+A    T  Y++
Sbjct: 287 VKDKRSRILGNVTMDMTIIDLSGIEDVKVGDTVLIVGKNGKEEISFNDIAKMCNTIPYEI 346

Query: 358 LVRIGTRYAKF 368
           + RI  R  + 
Sbjct: 347 MCRISKRVKRI 357


>gi|332360532|gb|EGJ38342.1| alanine racemase [Streptococcus sanguinis SK1056]
          Length = 369

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 146/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  +             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWMDLALDAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   +    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEVIHRLQAAGAVAEGIFTHFATADEVDHYKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G + PI+G+++MD     +  S  +  G  + + G      I + DVA   GT 
Sbjct: 296 --VLIDGQLCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITVTDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|221196747|ref|ZP_03569794.1| alanine racemase [Burkholderia multivorans CGD2M]
 gi|221203416|ref|ZP_03576435.1| alanine racemase [Burkholderia multivorans CGD2]
 gi|221177350|gb|EEE09778.1| alanine racemase [Burkholderia multivorans CGD2]
 gi|221183301|gb|EEE15701.1| alanine racemase [Burkholderia multivorans CGD2M]
          Length = 373

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 156/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +   +  +R  AVVK NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHIRPDAVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P   +++    L   +    QL              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGIFEPADVELVERHRLTVAVHCDEQLDLLIAARPQ-QPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            + +        ++ H A A          QL +F 
Sbjct: 120 IQLKMNSGMNRLGYRPDAFRAAWERAASAPSIGRITLMMHFANA---DEGEIDWQLAQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
              +   G E +L++S+  L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 AATAGIPG-ERTLSNSAAALWHPRAHRDWVRPGTILYGASPTGASRHIADTPLMAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++   AGE V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQSLAAGETVGYGRRFTAERPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGVLTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|291166386|gb|EFE28432.1| alanine racemase [Filifactor alocis ATCC 35896]
          Length = 388

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 88/383 (22%), Positives = 160/383 (41%), Gaps = 25/383 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M        +I+L  L+ N+ ++  L +   +   V+K NAYG G  +IA    N G+  
Sbjct: 1   MRQYGATWAEINLDTLEQNYKNLKQLITHKTKVCCVLKANAYGHGSVEIAKLYENMGIDY 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118
             V++++E ++LR    +  I  L  +   Q + +   N+   I ++ Q    + +    
Sbjct: 61  IAVSNMDEALELRNAGIKLPITCLSFVPEYQYEELLKNNIDIPIYTLSQGIALNNIALKH 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  +++D+G +R+G    + A+                I +H A AD+        
Sbjct: 121 QKVANVHIKIDSGMSRIGFLCNDMAIRDIKQLSRLDGLHFKGIFTHFARADERDKFHTQK 180

Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229
           Q   F  LI   +            +++  +  P YH  + R GI+L+G         K+
Sbjct: 181 QFYVFSKLIQSLEKQNITFDIRHCCNTAATICYPEYHLDMVRLGIALFGYYPSKEVSEKN 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDS 288
             ++  ++  + I  ++    G  VSYG +  +  D   IA   IGYADG+   LS    
Sbjct: 241 VNIKPAMSLFSTISNLKVVEKGTGVSYGHKYIVQDDYEKIATIPIGYADGFSRALSN--- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLDDV 346
                        IKG   PI+G + MD +M  +  S    +GD + I+    D+ ++ +
Sbjct: 298 --------NCYVKIKGDKYPIVGNVCMDQSMIRLDISKEFNIGDKVVIYSDEQDMSVERL 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A GT +Y++L  +  R  + +
Sbjct: 350 AKAMGTISYEVLCMMQRRIPRIF 372


>gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6]
 gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6]
          Length = 845

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 159/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    L+IDL AL  N   + AL+G     AV+K +AYG G  + A A   AG +   V 
Sbjct: 480 DRPTWLRIDLDALAANVRHLRALAG-VPLMAVLKADAYGHGAIRAARAALGAGAEALAVA 538

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
           ++ E   LR +   ARI +L    P Q        L   +         S+   S G   
Sbjct: 539 TLGEARTLRAHGIAARILLLGYTPPWQADETVRLGLDCTLFDHDSALALSRAAQSAGRPV 598

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VDTG  RLGL   E   F          ++  + +H A AD+        QLERF
Sbjct: 599 RVHIKVDTGMARLGLVHSEVGPFLTVLHQLPGLEIHGLYTHFASADEADLRAAQAQLERF 658

Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTV 235
             L+     +  +      A+S+  L  P   F + RPGI+ YG     +   P   + V
Sbjct: 659 NHLLADLVAAGLRPPLVHAANSAATLRLPAARFDMVRPGIACYGLNPSPHTPLPPGFRPV 718

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  + +  +R+  AG  VSYGG    T+ + IA    GYADG                 
Sbjct: 719 LSFHSEVAQVRELPAGTPVSYGGTYVTTQPTRIATIPAGYADGIRRA------------P 766

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
                 I G   P++G+I MD TM D++    +  GD + + G     +I  D+VA   G
Sbjct: 767 PWQSVLIAGQRAPVVGRICMDYTMVDVSHIPGVRRGDAVVLIGRQGADEISADEVAEWLG 826

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y++L  I  R  +
Sbjct: 827 TISYEVLTSILPRVPR 842


>gi|328554160|gb|AEB24652.1| alanine racemase [Bacillus amyloliquefaciens TA208]
          Length = 393

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 98/384 (25%), Positives = 165/384 (42%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + +++DL A+K N  ++     N ++  AVVK NAYG G  ++A     +G  +  V 
Sbjct: 6   REVWIEVDLDAIKKNIRAIRRHIPNKSKIMAVVKANAYGHGSVEVARQALESGASELAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GV 120
           SVEEG+ LR     A I VL        K     N+      V  +   ++++       
Sbjct: 66  SVEEGIVLRRAGITAPILVLDFTALSCVKKSAVWNITLSAFQVSWIKKANQILEEEAVSK 125

Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+  + + L       +        I +H + AD+P + +  +Q 
Sbjct: 126 RLSIHINVDTGMGRLGVRTEKDLLAVVKALKSSTYLSWDGIFTHFSTADEPDTELTMLQH 185

Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSH 230
           E+F + +   K          + +++  +  P +   + R GI LYG             
Sbjct: 186 EKFISFLRFLKDQGITLPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKELDLV 245

Query: 231 PMQTVVTAEARIILIRK-ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            +   ++ +ARI  ++        VSYG         +IA   IGYADGY   LS     
Sbjct: 246 KLTPALSLKARIAYVKAMVTEPRTVSYGATYIAEPGEIIATIPIGYADGYSRALSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  VP+ G++TMDM M  + +S   + G+ + I+G     +I +D+
Sbjct: 303 --------GFILYRGRRVPVAGRVTMDMIMVSLGESEG-KQGEEVVIYGKQKGAEISVDE 353

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A   GT NY+++  +  R  +FY
Sbjct: 354 IAEMLGTINYEVVSTLSRRVPRFY 377


>gi|319898680|ref|YP_004158773.1| Alanine racemase [Bartonella clarridgeiae 73]
 gi|319402644|emb|CBI76189.1| Alanine racemase [Bartonella clarridgeiae 73]
          Length = 374

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 192/365 (52%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID+ A+  N+ ++         +AVVK +AYGLG EKIAPALY AG + FF+  ++E 
Sbjct: 20  ATIDIGAIVANYKTLARRVAPIECSAVVKADAYGLGAEKIAPALYQAGCRTFFIAHLKEA 79

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++L+   PQ   I +L GI    E+ +    ++PV++S   +  +       G   P  +
Sbjct: 80  LQLKAILPQNVTIVLLNGIPLTAEEFVAQAGIVPVLNSWHAIESWQMHCQKNGKKFPAVV 139

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E           +   +  IISHLA  DD +   N  Q    +T +
Sbjct: 140 QIDTNMNRLGLDQEELQWLIQTPTLFETADIKYIISHLANGDDITHTSNCAQKNAMKTAL 199

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     +ASLA+S GI LGP+++F L RPGI+LYG          +++V+  +A++I  R
Sbjct: 200 AQLPACKASLANSGGIFLGPDFYFDLVRPGIALYGIDPHGKHPTSLKSVLKLKAQVIQSR 259

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YGG     + S++   +IGYADG+   LS             G  +  GY 
Sbjct: 260 YTEAGTPVGYGGSFITQQPSILTTISIGYADGWLRNLSN-----------KGSVYFNGYK 308

Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+I+MD  + D T+      + GD++++ G    +++VA  +GT  Y++L  +G+R
Sbjct: 309 LPIIGQISMDSIIVDATNLKHKKPKRGDWVELIGIHQTIENVAADAGTIPYEILTSLGSR 368

Query: 365 YAKFY 369
           Y + Y
Sbjct: 369 YKRIY 373


>gi|315498295|ref|YP_004087099.1| alanine racemase [Asticcacaulis excentricus CB 48]
 gi|315416307|gb|ADU12948.1| alanine racemase [Asticcacaulis excentricus CB 48]
          Length = 376

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 121/363 (33%), Positives = 188/363 (51%), Gaps = 15/363 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L++DL ALK N+  +  L+     +AVVK +AYGLG + ++  L+  G + FFV    E 
Sbjct: 18  LRVDLGALKANYLKLCQLAAPTPVSAVVKADAYGLGVKAVSATLHAVGCRHFFVALTREA 77

Query: 69  VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            +LR + P  A ++VL G+ PG E    +  LIPV+    QL  ++      G + P  L
Sbjct: 78  FELRSHLPTDAALYVLNGLTPGSEARAAEARLIPVLDCPEQLDAWAAVARQRGQTLPALL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           QVDTG +RLG   ++           +  ++  ++SHLACAD+P++  N  QLE F    
Sbjct: 138 QVDTGMSRLGFMPEDLKALATAQERLQGLRIDYLMSHLACADEPANPANGQQLEAFEMAS 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +       A+S G+ LG  YH  L RPGI+LYG    +++ +PMQ V+  +  ++  R
Sbjct: 198 RLFPDTPLCFANSGGLFLGAEYHADLCRPGIALYGAAPHLDRPNPMQPVIALDLAVLQTR 257

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  + YGG         +A  + GYADG P  L              G  + KG  
Sbjct: 258 TVPAGTRIGYGGTVVTDAPKRLATLSAGYADGLPRRLGDQ-----------GAVYFKGTR 306

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +P +G+++MD  + DI       ++ GD++++ GP   LD VA A+GT  Y++L ++G R
Sbjct: 307 LPFIGRVSMDSIIIDIDALPEGTLKTGDFVELIGPHQSLDAVAEAAGTIAYEILTQLGPR 366

Query: 365 YAK 367
           Y +
Sbjct: 367 YHR 369


>gi|300023238|ref|YP_003755849.1| alanine racemase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525059|gb|ADJ23528.1| alanine racemase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 380

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 197/365 (53%), Gaps = 9/365 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + +DL  +  NW ++ A    A+ AAVVK +AYGLG E++  AL +AG   FF+ + EE 
Sbjct: 18  ITVDLAQIAANWRALAAKVAPAQCAAVVKADAYGLGAERVIAALSHAGCTTFFIATPEEA 77

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ 127
              R   P+A IF L G+  G      +  + PV+S++  +  ++ L    G + P AL 
Sbjct: 78  ETARKLAPEAHIFALDGLVGGCATAFANQGVTPVLSTLDDIAAWAALARMRGETLPAALH 137

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL +++    T +       +L L++SHLA AD+P    N  QL  F TL +
Sbjct: 138 IDTGLNRLGLPVRDVRRLTADPSVLSGLRLELVMSHLASADNPRDPKNRDQLLAFETLTA 197

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+  SLA+S G++LGP YHF L RPG ++YGG        P++  V   ARI+ +  
Sbjct: 198 LFPGVPRSLAASDGLMLGPAYHFNLVRPGYAIYGGQASQLAPAPVKPAVRVAARILAVAD 257

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y    +  R S IA  A GYADG P   S      +P    GG   I G++ 
Sbjct: 258 VAPGETVGYSATWRAKRPSRIATIAAGYADGVPRNSS------APDGRPGGHVLIDGHLA 311

Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++MD+   D+TD     ++  D+  + G  + ++D  +A+ T  Y++L R+G R+
Sbjct: 312 PLVGRVSMDLITVDVTDLPDGAVKPHDFATLIGEGLTIEDAGIAAATIGYEILTRLGPRF 371

Query: 366 AKFYT 370
            + Y 
Sbjct: 372 TRLYV 376


>gi|167827477|ref|ZP_02458948.1| alanine racemase [Burkholderia pseudomallei 9]
 gi|167914212|ref|ZP_02501303.1| alanine racemase [Burkholderia pseudomallei 112]
 gi|226195224|ref|ZP_03790815.1| alanine racemase [Burkholderia pseudomallei Pakistan 9]
 gi|225933029|gb|EEH29025.1| alanine racemase [Burkholderia pseudomallei Pakistan 9]
          Length = 374

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 155/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  
Sbjct: 3   RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    Q    +   +      
Sbjct: 61  LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQFKLLTAAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANA---DEGEIDWQMSVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG      R+  I V A GYADGYP                G  
Sbjct: 236 SRIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|184158698|ref|YP_001847037.1| alanine racemase [Acinetobacter baumannii ACICU]
 gi|183210292|gb|ACC57690.1| Alanine racemase [Acinetobacter baumannii ACICU]
 gi|322507492|gb|ADX02946.1| Alanine racemase 1, biosynthetic [Acinetobacter baumannii 1656-2]
 gi|323518612|gb|ADX92993.1| alanine racemase [Acinetobacter baumannii TCDC-AB0715]
          Length = 356

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 100/363 (27%), Positives = 170/363 (46%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 8   IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R    +  + ++ G+    E  +  +     VI    Q  +  K             ++
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKDPEIIEVIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLHIKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   +K      ++ V+T  A II 
Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP                     I G
Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRA-----------YVKQNFVAIDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350

Query: 365 YAK 367
             +
Sbjct: 351 PVR 353


>gi|238757005|ref|ZP_04618193.1| Alanine racemase, catabolic [Yersinia aldovae ATCC 35236]
 gi|238704835|gb|EEP97364.1| Alanine racemase, catabolic [Yersinia aldovae ATCC 35236]
          Length = 358

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 158/367 (43%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  K++L+AL +N + +    G ++  +VVK NAYG G  ++ P L  A    F +  
Sbjct: 3   RPIAAKLNLSALNHNLNIVRQHVGTSKIWSVVKANAYGHGLARVWPGL--AATDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E V LR    Q  I +L G   P    ++    L   + S  QL              
Sbjct: 61  LNEAVLLREQGWQGPILLLEGFFQPPDLALVDHYRLTTTVHSDWQLEAIRAARLDA-PLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG   ++A      + +        ++SH A A   +      Q  R +
Sbjct: 120 IYLKLNSGMNRLGFPSEQAEAVWQWANSLSNVAEVTLMSHFANA--DNHIGAGEQFARIQ 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
            +  H        A+S+ IL  P  H+   RPGI LYG +   +     +  ++ V++  
Sbjct: 178 HVSEHISAARC-FANSAAILRHPETHYDWVRPGIILYGASPSGDIADIAALGLRPVMSLH 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++    G  V YG     +    I V A GYADGYP    G           G  
Sbjct: 237 SEIIALQTLSVGHSVGYGSHYCASEPHRIGVVACGYADGYPRLAPG-----------GTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G ++MDM   D+T      VG  ++++G  + +D+VA A+GT  Y+L+ 
Sbjct: 286 IRVDGVLTHTVGAVSMDMLTVDLTPCPQAGVGSKVEVWGEHLPIDNVAAAAGTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 ALAGRVP 352


>gi|116628421|ref|YP_821040.1| alanine racemase [Streptococcus thermophilus LMD-9]
 gi|122266984|sp|Q03IX8|ALR_STRTD RecName: Full=Alanine racemase
 gi|116101698|gb|ABJ66844.1| alanine racemase [Streptococcus thermophilus LMD-9]
          Length = 367

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 157/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     K+DL+A+  N   + +      +T AVVK NAYG G  ++A  +    V  F V
Sbjct: 6   HRPTLAKVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHVSKQ-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  + P    +    N+   ++S+  L    K     +  
Sbjct: 65  SNLDEALELRQAGIEQPILILGVVLPDGVPLAIQENISLTVASLEWLALAQKQGLDLIGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+G+   +  D            +  I +H A AD+        QL  F
Sbjct: 125 TCHIKVDSGMGRIGVRNLKDADNLIAGLKALGADVEGIFTHFATADEADDSKFKRQLSFF 184

Query: 183 RTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             L+ +   +      ++S+  +      F   R G+ +YG       +   + +Q  ++
Sbjct: 185 TDLVDNLTDRPRLVHASNSATSIWHAATVFNTVRLGVVIYGLNPSGSVLELPYNIQPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E  +I ++   AG+ V YG     T + +I    IGYADG+   L G            
Sbjct: 245 LETALIHVKTLPAGQDVGYGATYTTTAEEVIGTLPIGYADGWTRDLQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G + PI+G+++MD     +     +  G  + + G +    I   +VA   GT 
Sbjct: 294 -HVIVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAEKRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRVPRSY 366


>gi|319654677|ref|ZP_08008756.1| alanine racemase [Bacillus sp. 2_A_57_CT2]
 gi|317393593|gb|EFV74352.1| alanine racemase [Bacillus sp. 2_A_57_CT2]
          Length = 423

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 155/374 (41%), Gaps = 26/374 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +I+L  +  N  SM   +       AVVK N YG G   +A A   AG     V +++
Sbjct: 50  WAEINLDHISYNVESMKKHAEEGTNVIAVVKANGYGHGDAAVAEAALEAGASSLAVATLD 109

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E + LR     A I V+    P         N+   +     L+   + +  G      L
Sbjct: 110 EAMALRNKKIAAPILVMGASRPEHAGEASAKNIALTVFQKEWLSQAYEYVEDGEVLNIHL 169

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + DTG  RLG+  ++ L    +   K K   L  + +H A AD   +     QL RF  +
Sbjct: 170 KFDTGMGRLGIRSRDELAGIESVIKKDKRFMLEGVFTHFATADSLENAYFEKQLSRFEEM 229

Query: 186 ISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAE 239
            S  + +      ++S+  L  P  HF   R GIS+YG    +    +   P++   +  
Sbjct: 230 TSWLEILPKYIHTSNSAAGLRFPKAHFNAVRMGISMYGLAPSMEIKSDLPFPLKEAFSLH 289

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ ++K   GE VSYG   +   D  IA   IGYADG+   L G             +
Sbjct: 290 TSIVHVKKLHKGEKVSYGATYEAQEDEWIATLPIGYADGWIRKLQGQ------------E 337

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
              +G  VPI+G++ MD  M  +   + +  G  + + G      I +D++A    T NY
Sbjct: 338 VLAEGLRVPIVGRVCMDQCMIKLPHEMPV--GTKVTLIGEQGEEKIPVDEIAEKLETINY 395

Query: 356 DLLVRIGTRYAKFY 369
           ++   + +R  + Y
Sbjct: 396 EVTCMVSSRVPRIY 409


>gi|76818834|ref|YP_337437.1| alanine racemase [Burkholderia pseudomallei 1710b]
 gi|167741914|ref|ZP_02414688.1| alanine racemase [Burkholderia pseudomallei 14]
 gi|167819093|ref|ZP_02450773.1| alanine racemase [Burkholderia pseudomallei 91]
 gi|217419246|ref|ZP_03450753.1| alanine racemase [Burkholderia pseudomallei 576]
 gi|237507771|ref|ZP_04520486.1| alanine racemase [Burkholderia pseudomallei MSHR346]
 gi|254189746|ref|ZP_04896255.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237]
 gi|254264373|ref|ZP_04955238.1| alanine racemase [Burkholderia pseudomallei 1710a]
 gi|254300019|ref|ZP_04967465.1| alanine racemase [Burkholderia pseudomallei 406e]
 gi|76583307|gb|ABA52781.1| alanine racemase [Burkholderia pseudomallei 1710b]
 gi|157810371|gb|EDO87541.1| alanine racemase [Burkholderia pseudomallei 406e]
 gi|157937423|gb|EDO93093.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237]
 gi|217398550|gb|EEC38565.1| alanine racemase [Burkholderia pseudomallei 576]
 gi|234999976|gb|EEP49400.1| alanine racemase [Burkholderia pseudomallei MSHR346]
 gi|254215375|gb|EET04760.1| alanine racemase [Burkholderia pseudomallei 1710a]
          Length = 374

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 155/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  
Sbjct: 3   RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    Q    +   +      
Sbjct: 61  LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQFKLLTAAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANA---DEGEIDWQMSVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG      R+  I V A GYADGYP                G  
Sbjct: 236 SRIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132]
 gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132]
          Length = 802

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 105/379 (27%), Positives = 157/379 (41%), Gaps = 23/379 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +  N    L+I+L A+ +N +     L  + +   +VK  AYG G  ++A  L    V  
Sbjct: 434 IKRNHGTVLEINLDAITHNLNYYRRQLGSSTKIMVMVKAFAYGSG-NEVAAWLQYHRVDY 492

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V   +EGV LR       I V+    P     IF+  L P I S   L  Y K     
Sbjct: 493 LTVAFPDEGVALRENGISLPIMVMNS-DPDSYSTIFEYGLEPEIYSFRVLEAYLKAKENW 551

Query: 120 VS---HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VN 175
                    L++DTG +RLG   +E         +    Q++ I SHL  AD+      +
Sbjct: 552 KPDELTKIHLKIDTGMHRLGFLEKEVPPLLKALEDHPKVQVASIFSHLVGADEAKHDAFS 611

Query: 176 SVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q+  +    S             + +++GI+  P   + ++R GI LYG      +  
Sbjct: 612 KEQIACYERASSAIINGLGYSPIRHICNTAGIIRFPEARYDMSRLGIGLYGVASSGLEQK 671

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +QTV T +  I  I+     E V YG    L R+S IA  AIGYADGY           
Sbjct: 672 DLQTVATLKTTISQIKVLDPKETVGYGRYGVLNRESKIATIAIGYADGYDRGFG------ 725

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                      + G   P +G I MDM M D+TD    + GD + +FG +  L ++A   
Sbjct: 726 ----RGNAFVLVHGKACPTMGSICMDMCMIDVTDV-DCKEGDEVIVFGENPSLTELAEKI 780

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++L  I +R  + +
Sbjct: 781 NTIPYEILTGISSRVKRVF 799


>gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
 gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
          Length = 857

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 98/371 (26%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + +  + +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 498 LEVNLNAVVKNLNHYRSFMKPHTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVADE 557

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125
           GV LR     + I ++        K +FD +L P + S   L               P  
Sbjct: 558 GVTLRKNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLDALVKEAEKEGITGFPVH 616

Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG    ++  +       +       + SH   AD       ++ Q E F+
Sbjct: 617 IKLDTGMHRLGFDPHKDMDELIRRLKRQNAIIPRSVFSHFVGADSDDFDTFSAQQFELFK 676

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P+    + R G+ LYG   + NK      V T 
Sbjct: 677 LGADKLQAAFDHKILFHMDNSAGIEHFPDRQMDMCRLGLGLYGINSRNNKIINN--VSTL 734

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ I +  AGE + Y  +  L RDSLIA   IGYADG    LS             G
Sbjct: 735 KTTILQIHQLPAGESIGYSRKTYLERDSLIAAIPIGYADGLDRRLSNRR----------G 784

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+TD    + GD ++IFG  + +  ++ A  T  Y++L
Sbjct: 785 YCLVNGQKAEYVGNICMDVAMIDVTDI-DCKEGDSVEIFGDHLPVTVLSDAIETIPYEVL 843

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 844 TGISNRVKRVY 854


>gi|170735828|ref|YP_001777088.1| alanine racemase [Burkholderia cenocepacia MC0-3]
 gi|169818016|gb|ACA92598.1| alanine racemase [Burkholderia cenocepacia MC0-3]
          Length = 373

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 155/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +   +  +R  AVVK NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHIRPDAVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGL--AAADGIGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L G+  P   ++     L   +    QL              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGVFEPADVELADRHRLTVAVHCDEQLDLLIAAKPR-QPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            + N        ++ H A A          QL++F 
Sbjct: 120 IQLKMNSGMNRLGYRPAAFRAAWERAANAPSIGKITLMMHFANA---DEGEVDWQLDQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
              +   G E S+++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 ATTAGIPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLS 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++     E V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSRVELWGDQVKVDDVAQASGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|16125907|ref|NP_420471.1| alanine racemase [Caulobacter crescentus CB15]
 gi|221234670|ref|YP_002517106.1| alanine racemase [Caulobacter crescentus NA1000]
 gi|20137228|sp|Q9A7Q9|ALR_CAUCR RecName: Full=Alanine racemase
 gi|13423069|gb|AAK23639.1| alanine racemase [Caulobacter crescentus CB15]
 gi|220963842|gb|ACL95198.1| alanine racemase [Caulobacter crescentus NA1000]
          Length = 364

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 200/372 (53%), Gaps = 14/372 (3%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   +  R+ IDL AL +N+ ++ A +G+A  A  VK +AYGLG   +A  L+  G + F
Sbjct: 1   MTDAQDTRITIDLDALAHNYAALRARAGDAEVAPAVKADAYGLGAAPVADRLWAEGARSF 60

Query: 61  FVTSVEEGVKLRLYTPQ--ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           +V  + EGV LR       A I+VL G  PG  + +    L+PV++S+PQ+  +  + + 
Sbjct: 61  YVARLAEGVALRRSLGDREATIYVLDGATPGSGEALEGAQLVPVLNSLPQVEAW-NVQAR 119

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 AL +DTG NRLGL  +E      +    K   + L++SHLACAD P   +N+ Q
Sbjct: 120 SGRLRAALHIDTGMNRLGLRPEELKVLVGSFDRLKRLDVELVVSHLACADTPEHPLNATQ 179

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           L RF+   +   G+  SLA+S G+ LG  Y F  TRPG+SLYGG  +      ++ V T 
Sbjct: 180 LARFQEAAALLPGVRRSLANSGGLFLGEAYRFDQTRPGVSLYGGGPEGRPHPEIRAVATV 239

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           EA I+ +R    GE + YG     + ++ +A+ A GYADG P              F  G
Sbjct: 240 EAPILQVRVVPRGESIGYGAGWTASDNTRVAIVAAGYADGVPRAA-----------FPRG 288

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           + +  G   P+LG+++MD+   D+TD  +   G  +++FG ++ +DD A A+GT+ Y+ L
Sbjct: 289 EVWFDGARRPMLGRVSMDLIAVDVTDCDAARPGAMVELFGANLPVDDAADAAGTSAYERL 348

Query: 359 VRIGTRYAKFYT 370
            R+  R  + Y 
Sbjct: 349 TRLTLRGVRRYV 360


>gi|313892618|ref|ZP_07826205.1| alanine racemase [Dialister microaerophilus UPII 345-E]
 gi|313119015|gb|EFR42220.1| alanine racemase [Dialister microaerophilus UPII 345-E]
          Length = 365

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 103/371 (27%), Positives = 157/371 (42%), Gaps = 25/371 (6%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           KI L AL++N   + +    N    A++K + YG G           G     V  V+EG
Sbjct: 7   KISLKALRHNLRLIRSTVPENVELMAILKSDGYGHGSIATLNIALEEGYSSAAVARVDEG 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +KLR +     I+ L    P    +    + ++P+  +V   T  +            L 
Sbjct: 67  IKLRQHGFNCPIYTLGLPLPYDMPVGVANDMIMPIDDTVDLKTMEAVAAVSNKEVKVMLT 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NRLG+ L +  +F          +L    +H+A AD+        QL+ F   + 
Sbjct: 127 VDTGMNRLGIHLDKIPEFLKKLKRYPHLKLHGTFTHMATADEKDKTFAIAQLKEFEKALE 186

Query: 188 HY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARI 242
                K    S A+S+GIL  P   + L RPGI +YG      + K+  +Q V++  +  
Sbjct: 187 LLPKTKDFRISAANSAGILELPQSLYNLARPGIIMYGIYPSGDMKKNLDLQPVMSLISHC 246

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    GE V YG   K       A   IGYADGYP +LS             G   I
Sbjct: 247 IHVQTLKKGETVGYGATYKAEHMMKTATIPIGYADGYPRSLSN-----------KGYVLI 295

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358
            G   PI+G+I MD  M  + D+  +  GD + + G      I +++VA  + T  Y+L+
Sbjct: 296 GGKKRPIVGRICMDQLMVAVDDT--VRTGDQVVLIGEQGNEKITIEEVAELAETIPYELM 353

Query: 359 VRIGTRYAKFY 369
                R  + Y
Sbjct: 354 CIF-KRIIRVY 363


>gi|329121169|ref|ZP_08249797.1| alanine racemase [Dialister micraerophilus DSM 19965]
 gi|327470251|gb|EGF15712.1| alanine racemase [Dialister micraerophilus DSM 19965]
          Length = 365

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 103/371 (27%), Positives = 156/371 (42%), Gaps = 25/371 (6%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           KI L AL++N   + +    N    A++K + YG G           G     V  V+EG
Sbjct: 7   KISLKALRHNLRLIRSTVPENVELMAILKSDGYGHGSIATLNIALEEGYSSAAVARVDEG 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +KLR +     I+ L    P         + ++P+  +V   T  +            L 
Sbjct: 67  IKLRQHGFNCPIYTLGLPLPYDMPAGVANDMIMPIDDTVDLKTMEAVAAVSNKEVKVMLT 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NRLG+ L +  +F          +L    +H+A AD+        QL+ F   + 
Sbjct: 127 VDTGMNRLGIHLDKIPEFLKKLKRYPHLKLHGTFTHMATADEKDKTFAIAQLKEFEKALE 186

Query: 188 HY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARI 242
                K    S A+S+GIL  P   + L RPGI +YG      + K+  +Q V++  +  
Sbjct: 187 LLPKTKDFRISAANSAGILELPQSLYNLARPGIIMYGIYPSGDMKKNLDLQPVMSLISHC 246

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++    GE V YG   K       A   IGYADGYP +LS             G   I
Sbjct: 247 IHVQTLKKGETVGYGATYKAEHMMKTATIPIGYADGYPRSLSN-----------KGYVLI 295

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358
            G   PI+G+I MD  M  + D+  +  GD + + G      I +++VA  + T  Y+L+
Sbjct: 296 GGKKRPIVGRICMDQLMVAVDDT--VRTGDQVVLIGEQGNEKITIEEVAELAETIPYELM 353

Query: 359 VRIGTRYAKFY 369
                R  + Y
Sbjct: 354 CIF-KRIIRVY 363


>gi|255319496|ref|ZP_05360710.1| alanine racemase [Acinetobacter radioresistens SK82]
 gi|262378480|ref|ZP_06071637.1| alanine racemase [Acinetobacter radioresistens SH164]
 gi|255303436|gb|EET82639.1| alanine racemase [Acinetobacter radioresistens SK82]
 gi|262299765|gb|EEY87677.1| alanine racemase [Acinetobacter radioresistens SH164]
          Length = 356

 Score =  360 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 23/364 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+  A+  ++VK NAYG G +    AL      +F V  +EE ++
Sbjct: 8   IDSQALQYNLNRVKQLAPTAKIVSMVKANAYGHGIKDCLAAL--NSTDNFGVACLEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHPYALQ 127
           +R    Q  I ++ GI   +E   +    L  VI    QL +           +    ++
Sbjct: 66  IRKLGYQQPITLIEGIFSEEEMDSVIQYGLECVIHQSAQLDWLKARKEEYITKNLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG  + E ++  ++   +    +  +  H A A D    +N  Q  +F  +  
Sbjct: 126 LNSGMNRLGFKVPEIIEIINSLKAEGFSCVLAM--HFANA-DADHPLNEQQKTQFLQVKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEARIIL 244
               + AS  +S+ I   P  +F   RPGI LYG +   +KS      + V+T +A II 
Sbjct: 183 ACDPVLASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKSAHELDLKPVMTFDAAIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           + +   GE V YG     ++D  IA+ +IGY DGYP                     I  
Sbjct: 243 LNQIQTGEAVGYGSTFVASQDMQIAIVSIGYGDGYPRAF-----------IKPNYVMINN 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              P++G+++MDM   D++  L++ +G  ++++G    +D+VA A+GT  Y+LL R+  R
Sbjct: 292 KPAPVIGRVSMDMIAVDVSG-LTVTLGTQVELWGKQRLVDEVAEANGTIGYELLCRLSNR 350

Query: 365 YAKF 368
             + 
Sbjct: 351 PKRI 354


>gi|319745645|gb|EFV97945.1| alanine racemase [Streptococcus agalactiae ATCC 13813]
          Length = 366

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 162/377 (42%), Gaps = 27/377 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   R  IDL A+ NN  S+      + +T AVVK NAYG G  +++  + +  V  F V
Sbjct: 6   HRPTRALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKYIESV-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I VL  + P Q  +  + N+   ++S+  L             
Sbjct: 65  SNLDEAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAVDLSGL 124

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++VD+G  R+G+  L E          +    +  + +H A AD+  +   + QL  
Sbjct: 125 EVHIKVDSGMGRIGVRQLDEGNKLISELG-ESGASVKGVFTHFATADEADNCNFNQQLTF 183

Query: 182 FRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F+  IS           ++S+  L      F   R G+ +YG       ++  +P++  +
Sbjct: 184 FKDFISGLDNCPDLVHASNSATSLWHSETIFNAVRLGVVMYGLNPSGTDLDLPYPIKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+ ++ +++   G  V YG   ++T D  +    IGYADG+   + G           
Sbjct: 244 SLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGFS--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G +  I+G+++MD     +    +  +G  + + G      I   DVA    T
Sbjct: 295 ---VIVNGELCEIIGRVSMDQMTIRLPQKYT--IGTKVTLIGQQGSCNITTTDVAQKRQT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++L  +  R  ++Y
Sbjct: 350 INYEVLCLLSDRIPRYY 366


>gi|259908277|ref|YP_002648633.1| Alanine racemase, catabolic [Erwinia pyrifoliae Ep1/96]
 gi|224963899|emb|CAX55402.1| Alanine racemase, catabolic [Erwinia pyrifoliae Ep1/96]
 gi|283478209|emb|CAY74125.1| dadX [Erwinia pyrifoliae DSM 12163]
          Length = 356

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 161/371 (43%), Gaps = 23/371 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   I+  AL+ N       +G AR  +VVK NAYG G + +  +L       F + 
Sbjct: 2   SRPIVATINRAALRQNLAIARYTAGGARLWSVVKANAYGHGIDHVWQSLNE--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G     +  I D   L   + S  Q+   ++        
Sbjct: 60  NLEEAILLRERGWKKPILLLEGFFHPDDLQILDRYRLTTSVHSNWQINALAQA-KLSAPI 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++++G NRLG   +          + +      +++H A A+       +  L+R 
Sbjct: 119 DIYLKMNSGMNRLGFQPERVHGVWQKLRSLENVGELTLMAHFADAESAEG--VAEPLKRI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SLA+S+  L  P  H+   RPGI LYG +            +Q V+T 
Sbjct: 177 EQAAEGLEC-PRSLANSAATLWHPQTHYDWVRPGIILYGASPSGQWQDIAGSGLQPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I +++  AG  V YG + +      I V A GYADGYP                G 
Sbjct: 236 TSEVIAVQQLAAGSGVGYGSRYRANCSQRIGVVACGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    I+G ++MDM   D+T  L   +G  ++++G ++K+DDVA ASGT  Y+L+
Sbjct: 285 PIRVDGEKTQIVGAVSMDMITVDLTPCLQAGIGSQVELWGDNVKIDDVASASGTVGYELM 344

Query: 359 VRIGTRYA-KF 368
             +  R   + 
Sbjct: 345 CALAPRVPVRV 355


>gi|70725962|ref|YP_252876.1| alanine racemase 1 [Staphylococcus haemolyticus JCSC1435]
 gi|68446686|dbj|BAE04270.1| alanine racemase 1 [Staphylococcus haemolyticus JCSC1435]
          Length = 382

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 171/382 (44%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S++F R   L +DL+A+ NN++++  L  +     VVK N+YGLG  KIA  L   G   
Sbjct: 2   SDKFYRSTYLNVDLSAILNNYNTVRTLHSDKTVIPVVKANSYGLGSVKIAQHLMKNGADF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V +++E ++LR++   A+I +L  I            +   + S+  L    +L+S  
Sbjct: 62  FAVATLDEAIELRMHGINAQILILGVIPLEDINKAIQHRVALTVPSLQWLQHAIELISDD 121

Query: 120 --VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    +++DTG  RLG+ SL+E  +      +        + +H A AD+P   +  
Sbjct: 122 NEKNLWLHVKLDTGMGRLGIKSLEEYKEVIDLIQSHPHLVFEGVYTHFANADEPGD-LMD 180

Query: 177 VQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
            Q E+F TL++  +  +     +S+G LL         R GISLYG              
Sbjct: 181 HQYEQFETLVTQAEKPKFIHSQNSAGSLLRNFELCNAVRLGISLYGYYPSAYVKEKVETE 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +Q       +++  +    GE VSYG     T D  IA+  IGYADGY  ++ G      
Sbjct: 241 LQPSAQLLTQVVQTKYLKVGESVSYGSTFTATEDIKIAILPIGYADGYLRSMQG------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                     +KG+   ++G++ MD  +  + D   ++ GD + +           + +A
Sbjct: 295 ------AFVNVKGHQCEVIGRVCMDQMIIKVPD--DVKEGDSVTLLDNAYDSPQSAETLA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++L  +G R  + Y
Sbjct: 347 QKQDTISYEVLCNLGRRLPRIY 368


>gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 838

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 148/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +     L    +   +VK +AYG G  +IA  L    V    V   +E
Sbjct: 480 LEVNLGAMIANLNYYRGKLKPETKMVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 539

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G +LR     A I ++        K +FD  L P + S   L    K        + P  
Sbjct: 540 GSELRKAGITANIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 598

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + ++          +       + SHL  +D          Q+E F  
Sbjct: 599 IKLDTGMHRLGFAPEDMPRLIERLKGQNAVIARSVFSHLVGSDSQQFDSFTRRQIEMFEK 658

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +S+GI   P   F + R GI LYG     N       V T +
Sbjct: 659 ASMELQEAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGVNPIDNSIMNN--VSTLK 716

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ IR     + V Y  +  LTR S IA   IGYADG    L                
Sbjct: 717 TTILQIRDVPEEDTVGYSRKGHLTRPSRIAALPIGYADGLNRHLGNGH----------AY 766

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G I MD+ M D+TD    + GD ++IFG  + +  ++    T  Y++L 
Sbjct: 767 CLVNGQRAAYVGNICMDVCMIDVTDI-DCKEGDSVEIFGDHLPITVLSDVLETIPYEVLT 825

Query: 360 RIGTRYAKFY 369
            + TR  + Y
Sbjct: 826 SVSTRVKRIY 835


>gi|312870262|ref|ZP_07730391.1| alanine racemase [Lactobacillus oris PB013-T2-3]
 gi|311094207|gb|EFQ52522.1| alanine racemase [Lactobacillus oris PB013-T2-3]
          Length = 374

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 149/374 (39%), Gaps = 29/374 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L AL  N  +  A L  +++  AVVK NAYG G   +A A   AG     V  ++E +
Sbjct: 13  INLRALGENIQAQKAALPADSKILAVVKANAYGHGLVPVAQAALRAGATGMCVAILDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHPYAL 126
           +LR         VL      +  +  +  +   + S+  LT Y +              L
Sbjct: 73  ELRDSGLDVITLVLGITPVEEANVAAEAGVSLTVGSLDWLTKYHQFARQFNWKKPLKIHL 132

Query: 127 QVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            VDTG  R+G + + E              +   + +H A AD         Q  R++  
Sbjct: 133 AVDTGMGRIGFTNVAEFNQAVKILRRYPEFEFEGMFTHFATADSADHTYFDRQYARWQKF 192

Query: 186 ISHYKGIEA--SLASSS-GILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAE 239
           I     +     +A+S+ G+           R G+S+YG       + +   +Q V T  
Sbjct: 193 IESLDELPPYTHMANSATGLWHRDQITANTIRMGLSMYGYNPSGTDLPEDLHLQPVGTLR 252

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + I  ++K  AGE VSYG       D  +A   IGYADGYP  ++G             K
Sbjct: 253 SSISFVKKLAAGESVSYGATYTAEHDEWLATVPIGYADGYPRCMTGF------------K 300

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G   PI G++ MD  M  +     ++    + + G      I  +++A  + T NY
Sbjct: 301 VLVDGQYCPIAGRVCMDQMMVRLPKYYPVD--TPVILMGRSGDLTITAEEMADQAQTINY 358

Query: 356 DLLVRIGTRYAKFY 369
           ++L     R  + Y
Sbjct: 359 EILTNFNNRIHRTY 372


>gi|123966942|ref|YP_001012023.1| alanine racemase [Prochlorococcus marinus str. MIT 9515]
 gi|123201308|gb|ABM72916.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9515]
          Length = 399

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 183/383 (47%), Gaps = 31/383 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +++   A++ N   +   L  N    AVVK + YG   + ++      G     V 
Sbjct: 26  QRAWIEVSRKAIEANVRKLRSKLKNNCEFMAVVKADGYGHDAKVVSENAIRGGASQLGVA 85

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSC-GVS 121
           +++EG+KLR  +    I VL  ++  ++ +I F  +L+P +SS+ +    +++     + 
Sbjct: 86  TLKEGIKLRSSSINVPILVLGNLYAKKDLLICFRNDLMPTVSSIRECLICNEIGKINNMK 145

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSV 177
               L++DTG +RLG    E +   +N  + K   +  I SHLACAD+ +         +
Sbjct: 146 FSLHLKIDTGMSRLGFECDEFVQQFNNIKSLKNIDVKGIYSHLACADEKNALNPKSRTQL 205

Query: 178 QLERFRTL-----ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q E+F+ L     I + K I+  LA+S+G++LG N+HF + R G+++YG    IN +   
Sbjct: 206 QREKFQELLKLVSIDNTKNIKIHLANSAGMILGKNFHFDMVRVGLAMYGYDPLINTTEKS 265

Query: 233 --QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             +  +  +A++  +R    G  VSYG +    R + +AV +IGYADG   +LSG  S  
Sbjct: 266 LLKPALFLKAKVTFVRTIEKGVGVSYGNKFVSDRKTKLAVLSIGYADGIIRSLSGKIS-- 323

Query: 291 SPSVFLGGKGFIKGYM-VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                      I      P +G ITMD  M DITDS  I+VG  + + G D    I   D
Sbjct: 324 ----------LIHNKKLYPQVGSITMDQMMVDITDSEDIKVGSTMLLLGSDGEQTISPID 373

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
            A    +  +++L     R  + 
Sbjct: 374 WAHKCDSIPWEILCSFKNRLPRV 396


>gi|294506479|ref|YP_003570537.1| Alanine racemase [Salinibacter ruber M8]
 gi|294342806|emb|CBH23584.1| Alanine racemase [Salinibacter ruber M8]
          Length = 465

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 167/379 (44%), Gaps = 25/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            +   +DL A+++N   +   +G A   A++K +AYG G   +A A Y AG++ + V  +
Sbjct: 68  PVTATVDLAAIQHNAGVLQERAGGADVMAIIKADAYGHGVRPVARAAYEAGIRHYGVARL 127

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            EGV LR      RI VL    P Q     + +L   + S        +  S        
Sbjct: 128 PEGVHLREAGHGGRILVLGAPAPTQLPRYAEYDLDLTVPSADIAAAVVRHASPEAPLRVH 187

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + VDTG  RLGL+  +         +    +L+ + +H A AD P S     QL+RFR +
Sbjct: 188 VTVDTGMGRLGLAPDDVPAVMTRLADAPGVRLAGLWTHFATADAPGSSFAQTQLDRFRAV 247

Query: 186 ISHYKGI--EASLASSSGILL--GPNYHFQ--LTRPGISLYG--GTDKINKSHPMQTVVT 237
           +            A++ G+L    P + F   L R GI+LYG   T +++    ++  + 
Sbjct: 248 VDAVDVDVEHVHAANTGGLLTIGAPTHEFDASLVRSGIALYGLAATPELSARLDLRPAMR 307

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             AR+  ++   AG  +SYG Q +  R + IA   IGY DGYP   SG  S         
Sbjct: 308 LAARVTHLKTVPAGTPISYGAQWEAPRRTRIATLGIGYGDGYPRRCSGRAS--------- 358

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS-----IEVGDYIQIFGP-DIKLDDVALASG 351
               I G   PI+G I MDM M D+          ++ GD   +FGP      DVA  S 
Sbjct: 359 --VRIGGASCPIVGTICMDMCMVDLGPPNEAPATRVDRGDEAVLFGPAGPTAYDVAQWSD 416

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +  R  + + 
Sbjct: 417 TIPYEILCGVSPRVPRRHV 435


>gi|157691928|ref|YP_001486390.1| alanine racemase [Bacillus pumilus SAFR-032]
 gi|157680686|gb|ABV61830.1| alanine racemase [Bacillus pumilus SAFR-032]
          Length = 393

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 170/384 (44%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + ++++L A+K N  ++ A     ++  AVVK NAYG G  ++A     +G  +  V 
Sbjct: 6   REVWIEVNLDAIKRNIEAIQAHIPRKSKIMAVVKANAYGHGSVEVARQALESGATELAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS---CGV 120
           S+EEG+ LR    +A I VL        K      +         +   +++++      
Sbjct: 66  SLEEGIVLRRAKIEAPILVLGFTPLDCVKRAAAWRIDLSGLREDWIVEANEILAEEESQR 125

Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+   +E L         +  +   I +H + AD+P      +Q 
Sbjct: 126 RLGIHVNVDTGMGRLGVRTKEELLGVVEALEKSENLRWDGIFTHFSTADEPDPDFTLLQH 185

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSH 230
             F   +   K  GI+     + +++  +  P +   + R GI LYG       +   + 
Sbjct: 186 SIFIDFLRFLKKQGIKLPTVHMNNTAAAIAFPEFSADMIRLGIGLYGLYPSQYIESLDAV 245

Query: 231 PMQTVVTAEARIILIRK-ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            ++  ++ +ARI  +++       VSYG      RD +IA   IGYADGY   LS     
Sbjct: 246 QLEPALSLKARIAFVKEMVTEPRTVSYGATYVAKRDEVIATIPIGYADGYSRALSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  +PI G++TMDMTM  + + +  + G+ + I+G     +I +D+
Sbjct: 303 --------GFMLFRGERMPIAGRVTMDMTMISLGE-MKAKQGEEVVIYGRQKGGEISVDE 353

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY+++  +  R  +FY
Sbjct: 354 IAEMLNTINYEVIATLSRRVPRFY 377


>gi|134279387|ref|ZP_01766100.1| alanine racemase [Burkholderia pseudomallei 305]
 gi|134249806|gb|EBA49887.1| alanine racemase [Burkholderia pseudomallei 305]
          Length = 374

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 155/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  
Sbjct: 3   RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    Q    +   +      
Sbjct: 61  LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQFKLLTAAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANA---DEGEIDWQMSVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG      R+  I + A GYADGYP                G  
Sbjct: 236 SRIIGVQTLTPGETVGYGRCFAAEREMRIGIVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|83591749|ref|YP_425501.1| alanine racemase [Rhodospirillum rubrum ATCC 11170]
 gi|123527432|sp|Q2RXD1|ALR_RHORT RecName: Full=Alanine racemase
 gi|83574663|gb|ABC21214.1| alanine racemase [Rhodospirillum rubrum ATCC 11170]
          Length = 374

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 135/366 (36%), Positives = 199/366 (54%), Gaps = 16/366 (4%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL A+ +NW ++   L   A  A VVK NAYGLG  K+ PAL  AG +DF V  ++E
Sbjct: 11  LTVDLDAIADNWLALRGRLRPGASCAGVVKANAYGLGARKVVPALLAAGCRDFVVAQIDE 70

Query: 68  GVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           G+ +    P  AR+FVL G   G E  + D+ LIPV++S  Q+  ++K     G   P A
Sbjct: 71  GLDILDLLPADARLFVLSGPPEGAEDEVLDSALIPVLNSPDQIDRWAKACARAGRKAPAA 130

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VDTG  RLGL+  E      +          L+++HLACAD+P   +N+ Q   F   
Sbjct: 131 LHVDTGMRRLGLTPLELDALLADPRPLAAFTPVLVMTHLACADEPDHPLNAEQRALFAAA 190

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            + + G+ ASLA++SGI LGP +HF L RPGI LYGG   +  ++PM+ VV  + +I+ +
Sbjct: 191 AARFPGLRASLANTSGIFLGPEWHFDLARPGIGLYGGNPTVGTANPMRQVVKLQGKILQV 250

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+      V YG        S IA   +GYADG+P +                 G + G 
Sbjct: 251 RRIDTPLSVGYGATHTAPAGSTIATVGVGYADGFPRSAGNRAM-----------GLLAGR 299

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            VP++G+++MD+  FD++D        G  I + GPD+ +D +A  + T +Y++L R+G 
Sbjct: 300 SVPVVGRVSMDLLTFDVSDVPENLARPGAMIDLLGPDLSVDALADRADTVSYEILTRLGA 359

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 360 RYPRRY 365


>gi|332873690|ref|ZP_08441633.1| alanine racemase [Acinetobacter baumannii 6014059]
 gi|332738078|gb|EGJ68962.1| alanine racemase [Acinetobacter baumannii 6014059]
          Length = 358

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/363 (27%), Positives = 170/363 (46%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 10  IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 67

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R    +  + ++ G+    E  +  +     VI    Q  +  K             ++
Sbjct: 68  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 128 LNSGMNRLGFKDPEIIEVIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLHIKE 184

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   +K      ++ V+T  A II 
Sbjct: 185 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 244

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP                     I G
Sbjct: 245 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRA-----------YVKQNFVAIDG 293

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 294 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 352

Query: 365 YAK 367
             +
Sbjct: 353 PVR 355


>gi|289423534|ref|ZP_06425335.1| alanine racemase [Peptostreptococcus anaerobius 653-L]
 gi|289156036|gb|EFD04700.1| alanine racemase [Peptostreptococcus anaerobius 653-L]
          Length = 387

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 177/377 (46%), Gaps = 27/377 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             ++++L  L+ N++ +     + A+   V+K + YG G  ++A    + G   F V+  
Sbjct: 9   AWVEVNLDNLEFNYNELRKRVPDSAKMCMVIKADGYGHGAVELAKFYESIGADFFAVSRA 68

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
           +E  +LR    ++ I  L      + + + + +L   I      +  +++    G     
Sbjct: 69  KEAKELRDAGVKSPILNLGVTLEDEYEYMVERDLSMTIFDYNVASKINEIAKSMGKVARL 128

Query: 125 ALQVDTGFNRLGLSLQEALDF----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            +++DTG +R+G  ++  LD+           +  +L  + +H A AD+ +    ++QL 
Sbjct: 129 HIKLDTGMSRIGYVVEGRLDYVVGEIKKISQLENIRLEGMFTHFANADEANPEFKNIQLA 188

Query: 181 RFRTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQ 233
           RF++++     +GI+      ++S+ IL   +  F + RPG+  YG   +D++ K+  ++
Sbjct: 189 RFKSVVDSLEEEGIKIELIHCSNSAAILNDDD-DFNMVRPGVIQYGVYPSDEVEKNVAIK 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++ + R+  I++  +G  V YG     ++   IA   IGYADG+              
Sbjct: 248 PVMSFKCRVANIKELGSGVSVGYGRNYFTSKTERIATITIGYADGFLRG----------- 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGT 352
              G   +I G   P+ G I MD TM  + D L +++GD + +FG + + ++DVA    T
Sbjct: 297 -RKGAYVYINGQKCPVTGNICMDQTMVRLPDGLDVKIGDEVLLFGEEYVTVEDVARECST 355

Query: 353 TNYDLLVRIGTRYAKFY 369
             +++   I  R  + Y
Sbjct: 356 IVHEVWCNINRRVDRIY 372


>gi|52081594|ref|YP_080385.1| putative alanine racemase [Bacillus licheniformis ATCC 14580]
 gi|52786974|ref|YP_092803.1| YncD [Bacillus licheniformis ATCC 14580]
 gi|319647506|ref|ZP_08001726.1| alanine racemase [Bacillus sp. BT1B_CT2]
 gi|52004805|gb|AAU24747.1| putative alanine racemase [Bacillus licheniformis ATCC 14580]
 gi|52349476|gb|AAU42110.1| YncD [Bacillus licheniformis ATCC 14580]
 gi|317390354|gb|EFV71161.1| alanine racemase [Bacillus sp. BT1B_CT2]
          Length = 393

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 95/384 (24%), Positives = 166/384 (43%), Gaps = 31/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             + ++++L A+K N  +        ++  AVVK NAYG G  ++A      G  +  V 
Sbjct: 6   REVWVEVNLDAIKKNLRAFRRHIPKKSKIMAVVKANAYGHGSVEVARHALEHGASELAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM---SCGV 120
           SVEE V LR    +A I VL        K     N+      V  +   ++++   +   
Sbjct: 66  SVEEAVVLRKAGIKAPILVLGFTPLSCVKEAAAWNISLSAFQVDWIKEANEILENEADPN 125

Query: 121 SHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + VDTG  RLG+  +E  L         +  +   I +H + AD+P + +  +Q 
Sbjct: 126 RLAVHINVDTGMGRLGVRTKEKLLAIVEALTASENLEWEGIFTHFSTADEPDTELTMIQH 185

Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPM 232
           E+F + +   K          + +++  +  P +   + R GI +YG      I + + +
Sbjct: 186 EKFISFLRFLKEQGFKLPTVHMNNTAAAIAFPEFSADMIRLGIGMYGLYPSDYIRQLNLV 245

Query: 233 Q--TVVTAEARIILIRK-ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           +    ++ +ARI  ++        VSYG      R  +IA   +GYADGY   LS     
Sbjct: 246 KLVPALSLKARIAYVKTMLTEPRTVSYGATYVAERGEVIATIPVGYADGYSRELSNR--- 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G    +G  VP+ G++TMDM M  + +    +  + + I+G     +I +D+
Sbjct: 303 --------GFILHRGRRVPVAGRVTMDMIMVSLGEGEGKQG-EEVVIYGRQKGAEISVDE 353

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A    T NY+++  I  R  +FY
Sbjct: 354 IAEMLDTINYEVVSTISWRVPRFY 377


>gi|332363899|gb|EGJ41678.1| alanine racemase [Streptococcus sanguinis SK355]
          Length = 369

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 144/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSKH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      RI VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKRILVLGVSDLAALPLARKGKVSLTVASLEWLDLALAAEKDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  +T
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALT 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVDAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   P++G+++MD     +  +  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGKRCPLVGRVSMDQITVRLPQAYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|161521048|ref|YP_001584475.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|189352774|ref|YP_001948401.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|160345098|gb|ABX18183.1| alanine racemase [Burkholderia multivorans ATCC 17616]
 gi|189336796|dbj|BAG45865.1| alanine racemase [Burkholderia multivorans ATCC 17616]
          Length = 373

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 157/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +   +  +R  AVVK NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHIRPDAVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P   +++    L   +    QL              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGIFEPADVELVERHQLTVAVHCDEQLDLLIAAKPQ-QPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            + +        ++ H A A          QL +F 
Sbjct: 120 IQLKMNSGMNRLGYRPDAFRAAWERAASAPSIGRITLMMHFANA---DEGEIDWQLAQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
              +   G E +L++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 AATAGIPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++   AGE V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAAGETVGYGRRFTAERPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGVLTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDRVKVDDVAEASGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|83816434|ref|YP_444716.1| alanine racemase [Salinibacter ruber DSM 13855]
 gi|83757828|gb|ABC45941.1| alanine racemase [Salinibacter ruber DSM 13855]
          Length = 450

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 168/379 (44%), Gaps = 25/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            +   +DL A+++N   +   +G A   A++K +AYG G   +A A Y AG++ + V  +
Sbjct: 58  PVTATVDLAAIRHNAGVLQERAGGADVMAIIKADAYGHGVRPVAQAAYEAGIRHYGVARL 117

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            EGV LR      RI VL    P Q     + +L   +SS        +  S        
Sbjct: 118 PEGVHLREAGHGGRILVLGAPAPTQLPRYAEYDLDLTVSSADVAAAVVRHASPEAPLRVH 177

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + VDTG  RLGL+  +         +    +L+ + +H A AD P S     QL+RFR +
Sbjct: 178 VTVDTGMGRLGLAPDDVPAVMTRLADASGVRLAGLWTHFATADAPGSSFAQTQLDRFRAV 237

Query: 186 ISHYKGI--EASLASSSGILL--GPNYHFQ--LTRPGISLYG--GTDKINKSHPMQTVVT 237
           +            A++ G+L    P + F   L R GI+LYG   T +++    ++  + 
Sbjct: 238 VGAVDVDVEHVHAANTGGLLTIGAPTHEFDASLVRSGIALYGLAATPELSARLDLRPAMR 297

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             AR+  ++   AG  +SYG Q +  R + IA   IGY DGYP   SG  S         
Sbjct: 298 LAARVTHLKTVPAGTPISYGAQWEAPRRTRIATLGIGYGDGYPRRCSGRAS--------- 348

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS-----IEVGDYIQIFGP-DIKLDDVALASG 351
               I G   PI+G I MDM M D+          ++ GD   +FGP      DVA  S 
Sbjct: 349 --VRIGGASCPIVGTICMDMCMVDLGPPNEAPATRVDRGDEAVLFGPAGPTAYDVAQWSD 406

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +  R  + + 
Sbjct: 407 TIPYEILCGVSPRVPRRHV 425


>gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36]
 gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36]
          Length = 841

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 151/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +     L    +   +VK +AYG G  +IA  L    V    V   +E
Sbjct: 483 LEVNLGAMIANLNYYRGKLKPETKMVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 542

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G +LR     A I ++        K +FD  L P + S   L    K        + P  
Sbjct: 543 GSELRKAGITANIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 601

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG +L++          +       + SHL  +D          Q+E F  
Sbjct: 602 IKLDTGMHRLGFALEDMPRLIERLKGQNAVIARSVFSHLVGSDSQQFDSFTRRQIEMFEK 661

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +G     I   + +S+GI   P   F + R GI LYG     N       V T +
Sbjct: 662 ASMELQGAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGVNPIDNSIMNN--VSTLK 719

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ IR     + V Y  +  LTR S IA   IGYADG    L                
Sbjct: 720 TTILQIRDVPEEDTVGYSRKGHLTRPSRIAALPIGYADGLNRHLGNGH----------AY 769

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G I MD+ M D+TD    + GD ++IFG  + +  ++ A  T  Y++L 
Sbjct: 770 CLVNGQRAVYVGNICMDVCMIDVTDI-DCKEGDSVEIFGNHLPITVLSDALATIPYEVLT 828

Query: 360 RIGTRYAKFY 369
            + TR  + Y
Sbjct: 829 SVSTRVKRVY 838


>gi|163868814|ref|YP_001610040.1| hypothetical protein Btr_1758 [Bartonella tribocorum CIP 105476]
 gi|161018487|emb|CAK02045.1| Alanine racemase [Bartonella tribocorum CIP 105476]
          Length = 371

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 188/365 (51%), Gaps = 14/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID++A+  N+ ++         +AVVK NAYGLG  KIAPALY AG + FFV  + E 
Sbjct: 18  ATIDVSAIVANYITLAKRVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIREA 77

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           + L+   P    I +L G+    E+ +  + ++PV++S   +  + K+        P  +
Sbjct: 78  LHLKSILPSNVMIALLNGLPHLAEEFVAQSGIVPVLNSWNAIENWQKICQKKDKKFPAIV 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E           +   +  I+SHLA  +D +   N  QL  F+T++
Sbjct: 138 QIDTHMNRLGLDQKELQKLIKRPTIFENANIKYILSHLANGEDNTHPSNDAQLTSFKTIL 197

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +      AS A+S GI LG +++F L RPGI+LYG       +  ++ V+  EA+++  R
Sbjct: 198 AQLPPCRASFANSGGIFLGSDFYFDLVRPGIALYGSDPSGKHASLLKPVLRLEAQVLQNR 257

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  V YG     +R S +A  +IGYADG+   LS             G  +  GY 
Sbjct: 258 VVDIGTPVGYGETFITSRPSTLATISIGYADGWLRALSN-----------KGTVYFNGYK 306

Query: 307 VPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +P++G+++MD  + D TD     + GD+I++ GP   L+ VA  + T   ++L  +G+RY
Sbjct: 307 LPMVGRVSMDSIIVDTTDLDQKPQTGDWIELIGPHQTLEKVATDANTLPNEILTSLGSRY 366

Query: 366 AKFYT 370
              YT
Sbjct: 367 RYIYT 371


>gi|163786834|ref|ZP_02181282.1| alanine racemase [Flavobacteriales bacterium ALC-1]
 gi|159878694|gb|EDP72750.1| alanine racemase [Flavobacteriales bacterium ALC-1]
          Length = 368

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 101/378 (26%), Positives = 163/378 (43%), Gaps = 21/378 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M   +   L+IDL+AL +N++ +   L+   +  AVVK  AYG    +IA  L +  V  
Sbjct: 1   MSKAQETILEIDLSALTHNFNYLKSKLNAKTKFLAVVKAFAYGSDSIEIAKHLQSLEVDY 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
           F V   +EGV LR       I VL+   P   K I +  L P I S   L  +  +    
Sbjct: 61  FAVAYAKEGVVLRDAGITTPIIVLHP-QPVNFKTIIERCLEPSIYSAKVLNEFIAVAETE 119

Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176
              ++P  ++ +TG NRLG    +           K      + SHLA ++D       +
Sbjct: 120 SQTNYPVHIKFNTGLNRLGFWENDVEYIVSKLRVTKSIVAKSLFSHLAVSEDINEEEFTN 179

Query: 177 VQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           +Q++ F+ +   ++      I   L ++SG++  P+ H  + R GI LYG  + + +   
Sbjct: 180 LQVQNFKQIAKEFESKIGYKIWLHLCNTSGVINYPDTHLDMVRCGIGLYGFGNSVKEDQY 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ + + ++ I  I K   GE V Y    K      IA   IG+ADG             
Sbjct: 240 LKPIASLKSVISQIHKIEKGETVGYNRAYKAKGFEKIATVPIGHADGINRIYGN------ 293

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G   I      I+G + MDM M +IT+      GD + IF  + K    A ++ 
Sbjct: 294 ----GNGFVIINSKKAQIIGNVCMDMIMVNITNI-DCNEGDEVIIFNTNHKASKFAESAN 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++L  I  R  + +
Sbjct: 349 TISYEILTSISQRVKRVF 366


>gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
 gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
          Length = 825

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 169/370 (45%), Gaps = 24/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++D  A+ +N +   +L       AV VK  +YG G  ++A  L   GV    V   +E
Sbjct: 468 LEVDFDAMVHNLNYFRSLLPRKTMIAVMVKAFSYGSGAGEVASLLQYQGVNYLMVAFADE 527

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV+LR       I V+    P     + + NL P I S+  L  + ++++      +P  
Sbjct: 528 GVELRAAGITIPIGVMNP-EPEAFDHMIEFNLEPEIYSLELLEAFDRVLTKHGIEKYPVH 586

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRT 184
           L+++TG NR GL  ++          K+   +  + SHLA +D+         Q+ RF  
Sbjct: 587 LKLNTGMNRSGLDPEDLPALLKFFETKRKVIIRSMFSHLAGSDEARHDEYTLFQINRFIE 646

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           +    +      I   + +S+GI     Y F + R GI L+G +           V + +
Sbjct: 647 MTKEVQARFDYPIIRHILNSAGIERFGQYAFDMVRLGIGLHGISAVGAPLW---PVSSFK 703

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I  +R+    + V YG +  L RD+ IAV  +GYADG    LS             G+
Sbjct: 704 TYIAAVRQVKGDQTVGYGRKGVLGRDTRIAVIPVGYADGLDRHLS----------CGVGE 753

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            +I G  VPI+G I MD  M DITD+   +VGD ++IFG  I + +++   GT  Y++L 
Sbjct: 754 VWIGGQRVPIVGNICMDACMVDITDT-DAQVGDEVEIFGKHISVTELSDKLGTIPYEILT 812

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 813 SVSLRVKRIY 822


>gi|307244412|ref|ZP_07526523.1| alanine racemase [Peptostreptococcus stomatis DSM 17678]
 gi|306492231|gb|EFM64273.1| alanine racemase [Peptostreptococcus stomatis DSM 17678]
          Length = 387

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 157/376 (41%), Gaps = 26/376 (6%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+I+L  L+ N+  +   +    +   V+K NAYG G  +IA      G   F V  + 
Sbjct: 11  WLEINLDNLEYNFKGIKNKIPEGTKMCMVIKSNAYGHGAVQIARFYEELGADFFAVARLN 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125
           E ++LR +     I  L   +P   +     N+   +  +       K     G+     
Sbjct: 71  EAMELRDHGITTPILNLGYTNPLTIEDSIRNNVSMTVFDLELAQEIDKVAREIGIKAKIH 130

Query: 126 LQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           L++DTG +RLG       L E  D   +    +   L  + +H A AD  +    ++Q  
Sbjct: 131 LKLDTGMSRLGYVVLDDKLDEIADEIKHISQFEGIILEGMYTHFATADARNKEFENLQTH 190

Query: 181 RFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQT 234
           RF  ++   K     IE    S+S  +L  +  + + RPGI  YG       S+   ++ 
Sbjct: 191 RFSEMVDKVKAMGVNIEYIHCSNSAEILDCDEKYDMVRPGIIQYGIYPSNEVSYSIDIKP 250

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T +A++  ++   AG  +SYG     T    I   A GYADG+               
Sbjct: 251 VMTFKAKVSNVKVLDAGTSISYGRVYFTTVKEKIISIAAGYADGFLRGRRNP-------- 302

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-KLDDVALASGTT 353
                 +I G    I+G+I MD  M  +   + ++V D + IFG D+  +DDVA    T 
Sbjct: 303 ----YVYINGVKCSIVGRICMDQCMVRVPMDMDVKVNDDVVIFGDDLVSVDDVARGCDTI 358

Query: 354 NYDLLVRIGTRYAKFY 369
            ++++  +  R  + Y
Sbjct: 359 AHEVMCMMSRRVPRVY 374


>gi|116075736|ref|ZP_01472995.1| alanine racemase [Synechococcus sp. RS9916]
 gi|116067051|gb|EAU72806.1| alanine racemase [Synechococcus sp. RS9916]
          Length = 410

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 110/380 (28%), Positives = 171/380 (45%), Gaps = 26/380 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   L++   A+++N  ++  L        AVVK + YG G   +A A    G     V
Sbjct: 40  RQRAWLEVSPAAIESNARALRRLLKPTCALMAVVKADGYGHGATTVARAAVQGGAAQLGV 99

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
            +++EG+ LR    +  I VL  +  P   +      L+P +SS+ +      L    G 
Sbjct: 100 ATLQEGIDLRRAGLEQPILVLGNLTQPDDLRACLQWQLMPTLSSMREALLCQNLADGSGR 159

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPS---SHVNS 176
                L++DTG NRLG + ++A   T          L  I SHLA AD DP      V  
Sbjct: 160 QFAVQLKLDTGMNRLGCAWEDAPRLTEAIQQLNQLHLCGIYSHLALADGDPEGDGDRVTR 219

Query: 177 VQLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
           +Q  RF  ++ H    +A   LA+S+G L  P  H  L R G++LYG   +  ++ + P+
Sbjct: 220 LQQTRFNEVLHHLPEHQALHHLANSAGTLRDPGLHHDLVRVGLALYGHSPSPHLDAAVPL 279

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  +  +AR+ LIR+   G  VSYG +    R S +AV  IGYADG    LSG  +    
Sbjct: 280 QPAMGVKARVTLIREVGTGVGVSYGHRFVTQRPSRLAVVGIGYADGVSRCLSGKIT---- 335

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                     +G+ +  +G ITMD  + D TD   ++ GD + + G D    I     + 
Sbjct: 336 -------ALHRGHSLLQVGAITMDQLILDATDHPDLDSGDVVTLLGRDGDQEISPRSWSE 388

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
            S +  +++L     R  + 
Sbjct: 389 LSESIPWEVLCGFKHRLPRV 408


>gi|146299078|ref|YP_001193669.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium johnsoniae
           UW101]
 gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101]
          Length = 822

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 157/370 (42%), Gaps = 21/370 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L A+ +N +     L+ + +   +VK   YG G  +IA  L +  V    V   +E
Sbjct: 463 LEINLDAINHNLNYFKSKLADDVKIMVMVKAFGYGNGGLEIAKLLEHNKVNYLGVAFADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G+ L+    +  I VL          I    L P I S+  L  + K+         P  
Sbjct: 523 GISLKNGGIKLPIMVLNP-ESTSFPSIIQYKLEPEIYSIKGLNAFLKIAREKNLKDFPIH 581

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRT 184
           ++VDTG +RLG       +           ++  I+SHLA +DDP        Q+  F  
Sbjct: 582 IKVDTGMHRLGFEDNTIDELIATLKGNSTVRVQSILSHLATSDDPKHFDFVEKQISLFER 641

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           L S             + ++SGI   P+  + + R GI LYG ++   +   ++ V T +
Sbjct: 642 LSSKLISELNINPIRHILNTSGISNFPDAQYNMVRLGIGLYGVSNDPAEQKYLENVGTLK 701

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + I  +R   AG+ V YG +    +++ IA   IGYADG                   G 
Sbjct: 702 SIISQVRTIPAGDSVGYGRRFMADKETKIATIPIGYADGISRLWGNQI----------GF 751

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             IK     I+G + MDM M D++     + GD + IFG    + ++A A  T  Y+++ 
Sbjct: 752 VTIKNQKAYIVGSVCMDMLMVDVSHI-DCKEGDSVIIFGESPTVIEMAEALKTIPYEIMT 810

Query: 360 RIGTRYAKFY 369
            I  R  + +
Sbjct: 811 SISQRVKRVF 820


>gi|254253815|ref|ZP_04947132.1| Alanine racemase [Burkholderia dolosa AUO158]
 gi|124898460|gb|EAY70303.1| Alanine racemase [Burkholderia dolosa AUO158]
          Length = 465

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 154/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A++ N   +   +  +R  AVVK NAYG G E+I P L  A      +  
Sbjct: 95  RPIVAHIRPDAVRRNLAFIRRTAAQSRVWAVVKANAYGHGIERIYPGL--AAADGIALLD 152

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P   + +    L   +    QL              
Sbjct: 153 LDEAVRVRELGWDKPVLLLEGIFEPADVEWVDRHRLTVAVHCDEQLDLLIAAKPR-QPID 211

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          QLERF 
Sbjct: 212 IQLKMNSGMNRLGYRPDAFRAAWERAAAAPSIGTITLMMHFANA---DEGEIDWQLERFD 268

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAE 239
              +   G E ++A+S+G+L  P  H    RPG  LYG +     +     P+   +T  
Sbjct: 269 AATAGIPG-ERTVANSAGVLWHPRAHRDWVRPGTILYGASPTGVARHIADTPLLPAMTLT 327

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    G+ V YG +    R   I V A GYADGYP                G  
Sbjct: 328 SRIIGVQTLEPGDTVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTP 376

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T      +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 377 IAVDGVTTRVVGRVSMDMLTVDLTPCPHAGIGSSVELWGDRVKVDDVAEASGTIGYELMC 436

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 437 ALARRVP 443


>gi|319408978|emb|CBI82637.1| Alanine racemase [Bartonella schoenbuchensis R1]
          Length = 373

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 194/365 (53%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + ID+ A+  N+ ++         +AVVK NAYG+G EK+APALY AG + FFV  ++E 
Sbjct: 19  VTIDIGAIVANYTALAQHVAPTECSAVVKANAYGIGVEKVAPALYQAGCRTFFVAQIKEA 78

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           ++L+   P    + +L G+ P  E+ +    ++PV++S  ++  +  L        P  +
Sbjct: 79  LQLKNILPSDVTLALLNGLPPAAEEFVAQAGIVPVLNSWHEIESWQILCQEKSKKFPAIV 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DT  NRLGL  +E           ++  +  IISHL+  DD +   N  QL   +T++
Sbjct: 139 QIDTNMNRLGLDQKELQQLIKCPTLFEVADIKYIISHLSNGDDFTHSSNDTQLTTIKTML 198

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +     + SLA+S GI LGP+++F L RPGI+LYG       + P++ V+  EA++I  R
Sbjct: 199 AQLPACKVSLANSGGIFLGPDFYFDLVRPGIALYGINLHKKHTVPIKPVLKLEAQVIQSR 258

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YGG     R S++   +IGYADG+   LS             G  + KGY 
Sbjct: 259 FVEEGVPIGYGGSFITRRPSVLTTISIGYADGWMRNLSN-----------KGSVYFKGYK 307

Query: 307 VPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+I+MD  + D TD      + GD++++ G    ++DV++ + T  +++L  +  R
Sbjct: 308 LPIVGRISMDSIIVDATDLEHGKPKRGDWVELIGEHQTIEDVSIDANTVPHEILSSLSAR 367

Query: 365 YAKFY 369
             + Y
Sbjct: 368 CKRIY 372


>gi|91775684|ref|YP_545440.1| alanine racemase [Methylobacillus flagellatus KT]
 gi|122985541|sp|Q1H1N8|ALR_METFK RecName: Full=Alanine racemase
 gi|91709671|gb|ABE49599.1| alanine racemase [Methylobacillus flagellatus KT]
          Length = 357

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 101/362 (27%), Positives = 168/362 (46%), Gaps = 21/362 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL AL++N + +   +  +R  AVVK +AYG G  ++AP L       F V  +EE 
Sbjct: 6   ATIDLGALRHNLNLVRQRAPGSRVLAVVKADAYGHGLLRVAPGLAE--ADGFGVLRLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126
           + LR    + R+ +L GI    E        +  V+ +  QL  +  + +  V      L
Sbjct: 64  LALREAGYRQRLLLLEGIFSMDELGAAAQHGISVVVHNAQQLAMFEAMAAASVKPISVFL 123

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++++G NRLG   Q             +     +++H A AD+     +  QL+ F  + 
Sbjct: 124 KMNSGMNRLGFKSQAYKQALQRLEACPVVADVSLMTHFATADEERGIAD--QLKEFDAVT 181

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARII 243
           + +     SLA+S+ IL  P  H    RPGI LYG +        S  ++  +   + +I
Sbjct: 182 AGWHH-PVSLANSAAILRFPEAHRDWVRPGIILYGASPVSGVSAASFGLRPAMRFTSEVI 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            ++   AG+++ YG +   T+ + +A+ A GYADGYP                G    I 
Sbjct: 241 AVQTLEAGDILGYGARFTATQATRVAIVACGYADGYPRHAPN-----------GTPIAID 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G+    LG+++MDM   DI+     +VG  ++++G  + +D VA A+GT  Y+LL  +  
Sbjct: 290 GHRTQTLGRVSMDMLFADISQLPDADVGSQVELWGEVVPVDAVAEAAGTVGYELLCAVAP 349

Query: 364 RY 365
           R 
Sbjct: 350 RV 351


>gi|33864030|ref|NP_895590.1| alanine racemase [Prochlorococcus marinus str. MIT 9313]
 gi|33635614|emb|CAE21938.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9313]
          Length = 398

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 109/381 (28%), Positives = 173/381 (45%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++++  A++ N  S+   L  +    AVVK + YG G   +A A    G +   V
Sbjct: 26  RQRAWVEVNPAAVEANCRSLRRHLCESCALMAVVKADGYGHGALTVARAALQGGAKSLGV 85

Query: 63  TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
            +++EG++LR     A + VL    H    K      L+P +SS+ +      L    G 
Sbjct: 86  ATLQEGIELRQAGHNAPVLVLGNLTHSEDLKACLHWQLMPTLSSMREALLCQNLADGSGR 145

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP----SSHVNS 176
                L++DTG  RLG  L+EA        +    +L  I SHLA AD      ++ V  
Sbjct: 146 QFRIQLKIDTGMTRLGCELKEAPMLVEAIGHLNQLELKGIYSHLALADGDLQGKAAMVTD 205

Query: 177 VQLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230
            Q + F T++        G    LA+S+G L     H+ + R G++LYG +   ++    
Sbjct: 206 QQQQHFETVLRTLPEQHNGFTRHLANSAGTLRDRGLHYDMVRVGLALYGHSPNLQLQGKV 265

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q  ++ +AR+ LIR   AG  VSYG +    R S +AV  IGYADG   +LSG  S  
Sbjct: 266 DLQPALSVKARVTLIRDVPAGVGVSYGHRFTTRRPSRLAVVGIGYADGVSRSLSGQISAI 325

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
           +            G ++P +G ITMD  + D T+   +EVG  + + G D    I     
Sbjct: 326 A-----------DGQLLPQVGAITMDQLVLDATNHPDLEVGSIVTLLGKDGDACITPQQW 374

Query: 347 ALASGTTNYDLLVRIGTRYAK 367
           +  SG+  +++L     R  +
Sbjct: 375 SDLSGSIPWEVLCSFKHRLPR 395


>gi|53721740|ref|YP_110725.1| alanine racemase [Burkholderia pseudomallei K96243]
 gi|126455974|ref|YP_001074998.1| alanine racemase [Burkholderia pseudomallei 1106a]
 gi|167848949|ref|ZP_02474457.1| alanine racemase [Burkholderia pseudomallei B7210]
 gi|242313527|ref|ZP_04812544.1| alanine racemase [Burkholderia pseudomallei 1106b]
 gi|254192792|ref|ZP_04899227.1| alanine racemase [Burkholderia pseudomallei S13]
 gi|52212154|emb|CAH38171.1| alanine racemase, catabolic [Burkholderia pseudomallei K96243]
 gi|126229742|gb|ABN93155.1| alanine racemase [Burkholderia pseudomallei 1106a]
 gi|169649546|gb|EDS82239.1| alanine racemase [Burkholderia pseudomallei S13]
 gi|242136766|gb|EES23169.1| alanine racemase [Burkholderia pseudomallei 1106b]
          Length = 374

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 97/367 (26%), Positives = 156/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  
Sbjct: 3   RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    QL   +   +      
Sbjct: 61  LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQLKLLTAAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANA---DEGEIDWQMSVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG      R+  I V A GYADGYP                G  
Sbjct: 236 SRIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|224826682|ref|ZP_03699783.1| alanine racemase [Lutiella nitroferrum 2002]
 gi|224601283|gb|EEG07465.1| alanine racemase [Lutiella nitroferrum 2002]
          Length = 355

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 164/370 (44%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   I L   ++N+       G  R  AVVK NAYG G  + A A+ +     + V  
Sbjct: 2   RPLIASIRLEHFRHNYELARRQHGG-RALAVVKANAYGHGAVRCAQAVADI-ADGYAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR       I +L G+    E + +    L  V+ S  QL            + 
Sbjct: 60  LEEALQLREAGLTLPILLLEGVFEAAELREVEQHGLWLVVQSQQQLDMLLASQPA-KPYR 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G   Q+                 + ++H A AD+P+    + Q+E F 
Sbjct: 119 VWLKMDSGMHRAGFFPQDYAAAYQRLAESGKVDGIVKMTHFARADEPALSATAQQMETFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
              +   G E S+A+S+ I++         RPGI LYG T       +   ++ V+   +
Sbjct: 179 AACAGLPG-EVSVANSAAIMVHERTRRDWGRPGIMLYGATPLPAGYAQDAALKPVMRLTS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  +R+  AGE V YG      R + + + A GYADGYP   S            G   
Sbjct: 238 RVFGVRELAAGEPVGYGATFVTERPTRVGLIACGYADGYPRLAS-----------TGSPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G  + I+G+++MDM   D+TD  +  +G  ++++G  + +++VA  +GT  Y+LL  
Sbjct: 287 AIDGVRLRIIGRVSMDMITVDLTDLPAAGIGSEVELWGDSVNVNEVAAQAGTIAYELLCN 346

Query: 361 IGTRYAKFYT 370
           +  R    Y 
Sbjct: 347 V-KRAHFVYC 355


>gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
          Length = 828

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 148/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +     L    +   +VK +AYG G  +IA  L    V    V   +E
Sbjct: 470 LEVNLGAMIANLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 529

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR     A + ++        K +FD  L P + S   L    K        + P  
Sbjct: 530 GSDLRKAGITASVIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 588

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + ++          +       + SH   +D P        Q+E F  
Sbjct: 589 VKLDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDAPQFDAFTRKQIETFEK 648

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +S+GI   P   F + R GI LYG +   N       V T +
Sbjct: 649 ASMLLQEAFPYKILRHICNSAGIERFPGAQFDMVRLGIGLYGISPIDNSIMNN--VSTLK 706

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ IR     + V Y  +  L R S IA   IGYADG    L                
Sbjct: 707 TTILQIRDVPEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLGNGR----------AY 756

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD ++IFG  + +  ++    T  Y++L 
Sbjct: 757 CLVNGQRAPYVGNICMDVCMIDVTDI-DCKEGDSVEIFGDHLPITVLSDVLETIPYEVLT 815

Query: 360 RIGTRYAKFY 369
            + TR  + Y
Sbjct: 816 SVSTRVKRIY 825


>gi|262279566|ref|ZP_06057351.1| alanine racemase [Acinetobacter calcoaceticus RUH2202]
 gi|262259917|gb|EEY78650.1| alanine racemase [Acinetobacter calcoaceticus RUH2202]
          Length = 356

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 98/363 (26%), Positives = 168/363 (46%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 8   IDRHALQYNLNRVKQLAANSKIVSMVKANAYGHGIKDCLAALNAS--DAFGVACLQEGLE 65

Query: 71  LRLYTPQARI-FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHPYALQ 127
           +R    Q  +  +    +  +  I  +     VI    Q  +  K             ++
Sbjct: 66  IRELGFQQPVTLIEGAFYEDEMPIAIEQKFECVIHHQQQFEWLIKHKQEYIAQGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG  + E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKVPEIIEVIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               + AS  +S+ I   P  HF   RPGI LYG +   +K      ++ V++  A +I 
Sbjct: 183 ACDPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADKTVHDLDLKPVMSFTAEVIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP                     I G
Sbjct: 243 LNHIQAGEHVGYGSTFCAQQKMDIAIVSIGYGDGYPRA-----------YIKQNYVAIDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T ++ +++G  ++++G    +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QLCPVVGRVSMDMLAIDVT-AIQVKLGSQVELWGTHRLVDDVADANGTIGYELLCRLSNR 350

Query: 365 YAK 367
             +
Sbjct: 351 PIR 353


>gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
 gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
          Length = 822

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 155/371 (41%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + +    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEVNLNAVVDNLNYYRSFMKPETKMVCMVKASAYGAGAVEIAKTLQDHQVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125
           GV LR     A I ++          +F+ +L P + S   L               P  
Sbjct: 523 GVDLRKAGITANIMIMNPEM-SSFPTLFEYDLEPEVYSFRLLEALTHEAEKEGVTHFPIH 581

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG   + +          +       + SH   +D       ++ Q E F 
Sbjct: 582 VKLDTGMHRLGFDPEKDMPLLVERLKRQSAVIPRSVFSHFVGSDSDDFDAFSARQYELFL 641

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
              +  +      I   + +S+GI   P  H ++ R G+ LYG   + N+   +  V T 
Sbjct: 642 KGSAQLQQAYSHKILRHICNSAGIEHFPERHLEMVRLGLGLYGINSRNNE--ILHNVSTL 699

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ I +    + V Y  + +LTRDS IA   IGYADG    L               
Sbjct: 700 KTTILQIHEVPKEDTVGYSRKGRLTRDSRIAALPIGYADGLDRKLG----------CGRA 749

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++ A GT  Y++L
Sbjct: 750 YCLVNGQRAPYVGNICMDVCMIDVTDI-DCREGDTAIIFGDDLPVTVLSDAVGTIPYEIL 808

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 809 TGVSARVKRVY 819


>gi|317054962|ref|YP_004103429.1| alanine racemase [Ruminococcus albus 7]
 gi|315447231|gb|ADU20795.1| alanine racemase [Ruminococcus albus 7]
          Length = 373

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 156/382 (40%), Gaps = 27/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M+       +IDL+A+  N      L   +     VVK + YG   E I P L    GV+
Sbjct: 1   MNFLRRCWAEIDLSAVDYNVCEYKKLLPQDTELMCVVKASCYGHSDELIVPRLQQVHGVR 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            F V+++ EG++LR       I +L    P     +   ++I   + +      S   + 
Sbjct: 61  YFAVSNILEGIRLREIGINGDILILGYTPPECAAELVKYDIIQACTELCYAQELSA--NA 118

Query: 119 GVSHPYALQVDTGFNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSH 173
             +      VDTG  R+G+  + +E  D            L  I +H + AD   D    
Sbjct: 119 NGTVRLHGAVDTGMTRIGVHGTAEEQADELAKVSALPNISLEGIFTHFSSADGIDDADEK 178

Query: 174 VNSVQLERFRTLISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
              +Q ERF  +    K  GI    A + +S+G   G      L R GI LYG      K
Sbjct: 179 YTQMQSERFFRVRDLLKEKGIRLKHAHIKNSAGGAYGYGDESTLARLGIILYGLYPDPAK 238

Query: 229 SHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           S P   + V+T +A +  ++    G  VSYG      R   +A    GYADGYP  LS  
Sbjct: 239 SLPFVPKPVMTLKAVVSQVKWIDEGTAVSYGRTFVSDRRMKLATVTAGYADGYPRALSN- 297

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                      G+  I+G    I G++ MD  M D+TD      GD + +   +I  D +
Sbjct: 298 ----------KGEVIIRGKKCRICGRVCMDQFMCDVTDIPDAAPGDEVILMNAEINADVI 347

Query: 347 ALASGTTNYDLLVRIGTRYAKF 368
           A  +GT  Y++   I +R  + 
Sbjct: 348 AALTGTIGYEITCDITSRVPRV 369


>gi|119713697|gb|ABL97747.1| alanine racemase [uncultured marine bacterium EB0_41B09]
          Length = 360

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 170/371 (45%), Gaps = 23/371 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L+  IDL+AL +N   +  ++ N++  AV+K NAYG G  +   A+ +   +   + +
Sbjct: 2   RPLKAYIDLSALTSNLKLVKKIAKNSKVMAVLKANAYGHGLIESVKAIKS--AEGIAILT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE VK+R    +  I +L G+   ++    +  NL  V+ +  Q+ + S + +      
Sbjct: 60  IEEAVKIRKAGFKNTILLLEGLFAAEDIHQAEKLNLNIVVHNDLQMDYLSDV-TLKKPIN 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NRLG    +      N           +++H A AD+        QL+ F 
Sbjct: 119 VHLKINTGMNRLGFPPDQVDYLIENLNANPNVSEITLMTHFATADEKEGIT--KQLDCFN 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
            + ++Y    +S+A+S+ +   P       RPGI LYG +   +   K   ++ V++  +
Sbjct: 177 RVTNNY-NFSSSVANSAALYKFPEARLDWVRPGIMLYGASPFEDISAKKIEVKPVMSLVS 235

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II I+    G+ V YG       D  I + A GY DGYP                G   
Sbjct: 236 KIIAIQDIKKGQAVGYGNNFIAKDDMRIGIVACGYGDGYPRHA-----------KTGTPI 284

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           F+       +G+++MDM   D++      +G  ++++G  I +D+VA  SGT  Y+LL  
Sbjct: 285 FVHNKTTKTVGRVSMDMLYVDLSKIEKAVIGSKVEMWGNHISVDEVAKNSGTVGYELLCN 344

Query: 361 I--GTRYAKFY 369
           I   +R    Y
Sbjct: 345 ISASSRVPLEY 355


>gi|238760291|ref|ZP_04621434.1| Alanine racemase 1 [Yersinia aldovae ATCC 35236]
 gi|238701493|gb|EEP94067.1| Alanine racemase 1 [Yersinia aldovae ATCC 35236]
          Length = 343

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 100/340 (29%), Positives = 158/340 (46%), Gaps = 20/340 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             ID  AL++N   +  ++  +R  AVVK NAYG G  +IA  L +     + V  + E 
Sbjct: 6   AVIDRRALRHNLQQIRHIAPQSRLIAVVKANAYGHGLLEIAHTLQD--ADCYGVARIGEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  I+    +   + S+ QL     +          ++
Sbjct: 64  LMLRSGGIVKPILLLEGFFAAEDLPILVANRIETAVHSIEQLEALENVQ-LPAPINVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F         + Q   I+SH + AD+P       QL  F    
Sbjct: 123 LDTGMHRLGVRPEQAEAFYQRLSACDNVIQPVNIMSHFSRADEPQVETTRQQLSCFDAFT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           +   G++ S+A+S GILL P  H    RPGI LYG +         + +   +  ++ +I
Sbjct: 183 AGKPGMK-SIAASGGILLWPEAHRDWVRPGIILYGVSPLDSPHASHYNLLPAMALKSSLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V YGG     RD+ + V AIGY DGYP +              G    I 
Sbjct: 242 AVREHKAGEPVGYGGTWVSDRDTRLGVVAIGYGDGYPRSA-----------PSGTPVRIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
           G  V ++G+++MDM   D+    S +VGD + ++G D +L
Sbjct: 291 GREVGLVGRVSMDMISVDLGPDASDKVGDEVLLWGSDCRL 330


>gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
 gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
          Length = 830

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 150/373 (40%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   A+      +   +VK +AYG G  +IA  L    V    V   +
Sbjct: 471 LEVNLGAMVENLNHYRAMLRHPETKVICMVKASAYGAGSYEIAKTLQEHHVDYLAVAVAD 530

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     + I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 531 EGSELRKAGITSSIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 587

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG  + E          +       + SH   +D P        Q+E 
Sbjct: 588 PIHVKLDTGMHRLGFGIDEIPLLIRRLKAQNAVIARSVFSHFVGSDSPQFDSFTRQQIEL 647

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   F + R GI LYG +   N    +  V 
Sbjct: 648 FEKGSQELQAAFSHKILRHICNTAGIERFPGAQFDMVRLGIGLYGVSPIDN--SIIHNVS 705

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR   A + V Y  +  L R S IA   IGYADG    L             
Sbjct: 706 TLKTTILQIRDVPAEDTVGYSRKGHLERPSRIAAIPIGYADGLNRHLG----------RG 755

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++    T  Y+
Sbjct: 756 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYE 814

Query: 357 LLVRIGTRYAKFY 369
           +L  I TR  + Y
Sbjct: 815 VLTSISTRVKRVY 827


>gi|77409010|ref|ZP_00785730.1| alanine racemase [Streptococcus agalactiae COH1]
 gi|77172394|gb|EAO75543.1| alanine racemase [Streptococcus agalactiae COH1]
          Length = 366

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 27/377 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   R  IDL A+ NN  S+      + +T AVVK NAYG G  +++  + +  V  F V
Sbjct: 6   HRPTRALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKYIESI-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I VL  + P Q  +  + N+   ++S+  L             
Sbjct: 65  SNLDEAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVTSLEWLRLCQTSAVDLSGL 124

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++VD+G  R+G+  L E          +    +  I +H A AD+  +   + QL  
Sbjct: 125 EVHIKVDSGMGRIGVRQLDEGNKLISELG-ESGASVKGIFTHFATADEADNCKFNQQLTF 183

Query: 182 FRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F+  IS           ++S+  L      F   R G+ +YG       ++  +P+   +
Sbjct: 184 FKDFISGLDNCPDLVHASNSATSLWHSETIFNAVRLGVVMYGLNPSGTDLDLPYPINPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+ ++ +++   G  V YG   ++T D  +    IGYADG+   + G           
Sbjct: 244 SLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGFS--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G +  I+G+++MD     +    +  +G  + + G      I   DVA    T
Sbjct: 295 ---VIVNGELCEIIGRVSMDQMTIRLPQKYT--IGTKVTLIGQQGSCNITTTDVAQKRQT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++L  +  R  ++Y
Sbjct: 350 INYEVLCLLSDRIPRYY 366


>gi|325693570|gb|EGD35489.1| alanine racemase [Streptococcus sanguinis SK150]
          Length = 369

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 143/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   +   L       AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIAFNIRQLSAQLPQTTEKWAVVKANAYGHGAIEVSRY-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALSLARKGKVSLTVASLEWLDLALTAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPRAYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|33862083|ref|NP_893644.1| alanine racemase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634301|emb|CAE19986.1| putative Alanine racemase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 395

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 185/383 (48%), Gaps = 31/383 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +++   A+++N   +   L  N    AVVK + YG   + ++      G     V 
Sbjct: 22  QRAWIEVSGKAIESNVRQLRSKLKNNCEFMAVVKADGYGHDAKVVSEKAIKGGASQLGVA 81

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MSCGVS 121
           +++EG+KLR +   A I VL  ++  ++ +I F  +L+P IS+  +    + +  S  + 
Sbjct: 82  TLKEGIKLRSFGINAPILVLGNLYTKKDLLICFRNDLMPTISTFRECLICNNIGKSNNLK 141

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSV 177
               L+VDTG +RLG    + +   +N  + +   +  I SHLACAD+ +         +
Sbjct: 142 FSLHLKVDTGMSRLGFECDQFVQQFNNIKSLENIAVKGIYSHLACADEKNALNPKSSTQL 201

Query: 178 QLERFRTL-----ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSH 230
           Q E+F+ L     I + + I+  LA+S+G++LG ++HF + R G+S+YG      IN++ 
Sbjct: 202 QKEKFQELLKIIDIDNTQNIKIHLANSAGMVLGKDFHFDMVRVGLSMYGYDPSVNINENL 261

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +  +A++  +R    G  VSYG +    R + +AV +IGYADG    LSG  S  
Sbjct: 262 FLKPALFLKAKVTFVRTIEKGIGVSYGNKFVSDRKTKLAVLSIGYADGIIRNLSGKIS-- 319

Query: 291 SPSVFLGGKGFIKGYM-VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                      I      P +G ITMD  M DITDS  IEVG  + + G +    I   D
Sbjct: 320 ----------LIHNKRLYPQVGSITMDQMMVDITDSNDIEVGSTMLLLGSEGDKSISPID 369

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
            A    +  +++L     R  + 
Sbjct: 370 WADKCNSIPWEILCSFKNRLPRV 392


>gi|167837061|ref|ZP_02463944.1| alanine racemase [Burkholderia thailandensis MSMB43]
          Length = 356

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 152/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +  ++  A+VK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLTVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDLDVIDRYSLTTAVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + A        + Q+  F 
Sbjct: 120 VQLKMNSGMNRLGYAPEKFRAAWERARACPGIGQITLMTHFSDA--DGGRGVAEQMATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G   SLA+S+ +L  P+ HF   RPGI LYG +   +        ++  +T  
Sbjct: 178 RGAQGIAGA-RSLANSAAVLWHPSAHFDWVRPGIVLYGASPSGHSADIADKGLKPAMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTLAKGQAVGYGSVFVAEETMRIGVVACGYADGYPR-----------IAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA    T  Y+L+ 
Sbjct: 286 VVVDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAACCMTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|291298088|ref|YP_003509366.1| alanine racemase [Stackebrandtia nassauensis DSM 44728]
 gi|290567308|gb|ADD40273.1| alanine racemase [Stackebrandtia nassauensis DSM 44728]
          Length = 366

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 161/375 (42%), Gaps = 28/375 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
               +DL  +  N  ++   +  A     +K N YG G    A A  + G     V +++
Sbjct: 5   AEAVVDLGTIAANVEALAGRTS-AAVMPALKANGYGHGLVPAARACLDGGASRLGVATLD 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--Y 124
           E ++LR     A I               D ++   ++S  Q    S +   G  HP   
Sbjct: 64  EAMELRNSGVAAPILAWLVAPGLDLAAAVDADIELAVASREQ---LSAVADAGARHPARI 120

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G    E    +D    +      ++    SHLACAD+P + +   Q + 
Sbjct: 121 HLKADTGMGRGGAPRAEWQTLVDLAAKAQADGRIEIVGAFSHLACADEPGNPLTQSQDDN 180

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           FR  +      +       LA+S+G+L  P+ H+ L RPGI++YG    +    P++  +
Sbjct: 181 FRDFLDLLWAADVQPQWQHLANSAGLLAHPDTHYNLVRPGIAVYGY-PPVATEAPLRPAM 239

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  AR++L++   AG  + YG      R + +A+  +GYADG P + S            
Sbjct: 240 TLRARVVLVKTLPAGHGIGYGHTYVTKRPTRVAIVPLGYADGIPRSTSNR---------- 289

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNY 355
             +  + G   PI G+++MD  +    D   +  GD ++ FG  DI  +D A    T +Y
Sbjct: 290 -AEVLVGGRRCPIRGRVSMDQVV-VEVDEGDVRAGDVVEFFGDGDITAEDWATWHDTISY 347

Query: 356 DLLVRIGTRYAKFYT 370
           ++L  IG R  + Y 
Sbjct: 348 EILTSIGPRIPRRYV 362


>gi|327458867|gb|EGF05215.1| alanine racemase [Streptococcus sanguinis SK1057]
          Length = 369

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 144/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRSSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSKH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALAAEKDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGTVLKLPYEFEPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQAYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|46201989|ref|ZP_00208341.1| COG0787: Alanine racemase [Magnetospirillum magnetotacticum MS-1]
          Length = 371

 Score =  359 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 145/365 (39%), Positives = 201/365 (55%), Gaps = 14/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ID+ A+  NW  ++AL   A  +AVVK + YGLG E IAPAL  AG Q FFV  V EG
Sbjct: 11  LTIDVAAIVANWKRLSALVAPAEASAVVKADCYGLGMEHIAPALSAAGCQSFFVACVNEG 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127
           + LR   P A I VL G   G E      NLIPV++S+ Q+T ++     G   P A + 
Sbjct: 71  IALRRILPAAVIHVLSGPLGGDEGEFAAHNLIPVLNSLAQITGWAGFAKKGSGAPAAAIH 130

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGLS  E              +  L++SHLACADD  S +N+ QL   R L S
Sbjct: 131 IDTGMNRLGLSETELERLAAKPEITAAIRPILVMSHLACADDADSPMNARQLTTLRRLAS 190

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
           H   +  S+A+SSGI LG  +H  L RPG +LYG      + +PM  VV  + +I+ +R 
Sbjct: 191 HLPALPQSIAASSGIFLGRGFHLGLVRPGAALYGLNPMPGRPNPMSQVVKLQGKIVQVRD 250

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             + + V YG   ++     +AV A+GYADG+  +LS             G G I G  V
Sbjct: 251 VDSPQTVGYGATHRVEGKRKLAVVAVGYADGWFRSLSNR-----------GHGMIGGMKV 299

Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P+ G+I+MD+T FD+TD  +     G +I++ GPD+  D VA  +GT  Y++L  +G R+
Sbjct: 300 PVAGRISMDLTTFDVTDVPAEHAHPGAWIELIGPDLSPDRVADEAGTIGYEILTSLGRRH 359

Query: 366 AKFYT 370
            + +T
Sbjct: 360 HRRWT 364


>gi|238025116|ref|YP_002909348.1| alanine racemase [Burkholderia glumae BGR1]
 gi|237879781|gb|ACR32113.1| Alanine racemase [Burkholderia glumae BGR1]
          Length = 375

 Score =  359 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 156/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+++N   +   +   R  AVVK NAYG G E+I PAL  A      +  
Sbjct: 3   RPIVAQIRPAAVRHNLAIIRRKAAGTRIWAVVKANAYGHGIERIYPAL--ADADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L G+    +  + D   L   +    QL   +          
Sbjct: 61  LDEAVRVRELGWTRPVLLLEGLFDASDVAVADRYRLTVAVHGEEQLDMLASARPS-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          +++H A A        + Q ++F 
Sbjct: 120 IQLKMNSGMNRLGFRPSAFRAAWERASATPAVGRIALMTHFANA---DEGEVAWQTQQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E SL++S+ +L  P+ H    RPG  LYG +            +   +T  
Sbjct: 177 AATEGLPG-ERSLSNSAAVLWHPDAHRDWVRPGTILYGASPTGATRHIADTGLVPAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+I ++     E V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SRLIGVQTIEENETVGYGRRFAAKRTMRIGVVACGYADGYPRHAQ-----------TGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +  ++G+++MDM   D+T   +  VG  ++++G  +++DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGIVTRVVGRVSMDMLTVDLTPCPNARVGSSVELWGEQVRVDDVAEASGTIGYELMC 344

Query: 360 RIGTRYA 366
            I  R  
Sbjct: 345 AIARRVP 351


>gi|189501096|ref|YP_001960566.1| alanine racemase [Chlorobium phaeobacteroides BS1]
 gi|189496537|gb|ACE05085.1| alanine racemase [Chlorobium phaeobacteroides BS1]
          Length = 371

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 160/384 (41%), Gaps = 27/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M         I  + L++N+  +++ + G+ R  AVVK NAYG      +  L   GV+D
Sbjct: 1   MAGENLTSAIISSSNLEHNYRLTLDRIPGHCRIMAVVKANAYGHDAAGTSKILERLGVRD 60

Query: 60  FFVTSVEEGVKLRL----YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           F V ++ E   LR         + I       P       + ++   I     L     +
Sbjct: 61  FGVANIAEAASLRKQLTVSG-HSEILAFSSPLPDHIARYLEHDIAATICDFNMLRAAESI 119

Query: 116 MSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
            S   V     +++DTG  RLG + + A      +      +LS I +H A +       
Sbjct: 120 ASAHNVPLKVHVKIDTGMGRLGTTPENAFQLLEAAEKSPHLRLSGIYTHFAQSTSRD-AF 178

Query: 175 NSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KIN 227
              Q + F  + S ++           A+S GIL   N  F + RPGI LYG      + 
Sbjct: 179 TGRQRDLFTQICSEFEHRMQRTFCKHAANSGGILCHDNAFFDMVRPGIMLYGYFPDDSVK 238

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+    +++ I++  AG  +SY           IA  + GYADGYP TLS   
Sbjct: 239 GRADLKPVMLLSTKVMFIKEVEAGTTISYNRTWTAPSRRRIATLSAGYADGYPRTLSNRT 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDV 346
           +             I+G   P +G ITMD  M D+ +   + VGD   +F G  I   D+
Sbjct: 299 T-----------VSIRGKTFPQVGTITMDQFMVDLGNDRDVRVGDDALLFGGEGISAADL 347

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           AL +GT +Y+LL  + +R  + + 
Sbjct: 348 ALTAGTISYELLCAVSSRVRRVFV 371


>gi|126444859|ref|YP_001062046.1| alanine racemase [Burkholderia pseudomallei 668]
 gi|167905905|ref|ZP_02493110.1| alanine racemase [Burkholderia pseudomallei NCTC 13177]
 gi|254183078|ref|ZP_04889670.1| alanine racemase [Burkholderia pseudomallei 1655]
 gi|126224350|gb|ABN87855.1| alanine racemase [Burkholderia pseudomallei 668]
 gi|184213611|gb|EDU10654.1| alanine racemase [Burkholderia pseudomallei 1655]
          Length = 374

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 97/367 (26%), Positives = 156/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  
Sbjct: 3   RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    QL   +   +      
Sbjct: 61  LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQLKLLTAAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANA---DEGEIDWQMSVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG      R+  I V A GYADGYP                G  
Sbjct: 236 SRIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|239501434|ref|ZP_04660744.1| alanine racemase [Acinetobacter baumannii AB900]
          Length = 356

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 99/363 (27%), Positives = 169/363 (46%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  A + N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 8   IDRQAFQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R    +  + ++ G+    E  +  +     VI    Q  +  K             ++
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKDPEIIEVIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLHIKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   +K      ++ V+T  A II 
Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP                     I G
Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRA-----------YVKQNFVAIDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350

Query: 365 YAK 367
             +
Sbjct: 351 PVR 353


>gi|167770383|ref|ZP_02442436.1| hypothetical protein ANACOL_01726 [Anaerotruncus colihominis DSM
           17241]
 gi|167667390|gb|EDS11520.1| hypothetical protein ANACOL_01726 [Anaerotruncus colihominis DSM
           17241]
          Length = 405

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 99/391 (25%), Positives = 160/391 (40%), Gaps = 33/391 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M        +IDL  + +N   +   L+   RT AVVK +AYG G   ++ AL   G   
Sbjct: 1   MDYLRRTWAEIDLDRIVHNHRIIRQRLTPGCRTMAVVKADAYGHGDGYVSRALQQDGADW 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSC 118
           F V+++ E V LR       + +L    P    ++ + +L   + S       SK   + 
Sbjct: 61  FAVSNINEAVSLRRQGVVRPVLILGYTPPEMAGLLVEQSLTQTVYSGEYARALSKESAAR 120

Query: 119 GVSHPYALQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADD---P 170
            ++    +++DTG +R+G         +A +             +   +H +CAD+    
Sbjct: 121 KLTVDCHIKIDTGMSRIGFFAQQGHAAQAANEIARVCALPGLSCTGAFTHFSCADEYSAD 180

Query: 171 SSHVNSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225
           S      Q E F   +   K  G+E       +S+  L  P YH  + RPG+ LYG +  
Sbjct: 181 SRAFTHRQFEVFMETLGLLKQAGVEFELRHCCNSAATLAYPEYHLDMVRPGVVLYGLSPS 240

Query: 226 INKSHPMQ--TVVTAEARIILIRKALAGELVSYGGQKKLTR-DSLIAVAAIGYADGYPLT 282
              +        ++    + +++       VSYG +    +    IA  AIGYADGY   
Sbjct: 241 PECAGMAALLPAMSLYTTVTMVKTLDQHAAVSYGRRYVTPKGGRRIASIAIGYADGYRRN 300

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
            +             G+  I+G   PI G + MD  M D+     ++ GD + + G +  
Sbjct: 301 FTN-----------KGRVIIRGQYAPITGAVCMDQLMVDVNAIDGVQSGDVVTLVGENGG 349

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             I LDD A  +GT NY+    IG R  + Y
Sbjct: 350 AAITLDDFAALNGTINYEECCLIGRRVPRVY 380


>gi|22537824|ref|NP_688675.1| alanine racemase [Streptococcus agalactiae 2603V/R]
 gi|25011768|ref|NP_736163.1| alanine racemase [Streptococcus agalactiae NEM316]
 gi|76788152|ref|YP_330298.1| alanine racemase [Streptococcus agalactiae A909]
 gi|77412407|ref|ZP_00788715.1| alanine racemase [Streptococcus agalactiae CJB111]
 gi|77414530|ref|ZP_00790676.1| alanine racemase [Streptococcus agalactiae 515]
 gi|81845386|sp|Q8DY10|ALR_STRA5 RecName: Full=Alanine racemase
 gi|81845564|sp|Q8E3M9|ALR_STRA3 RecName: Full=Alanine racemase
 gi|123601347|sp|Q3JZK5|ALR_STRA1 RecName: Full=Alanine racemase
 gi|22534718|gb|AAN00548.1|AE014268_8 alanine racemase [Streptococcus agalactiae 2603V/R]
 gi|24413308|emb|CAD47387.1| unknown [Streptococcus agalactiae NEM316]
 gi|76563209|gb|ABA45793.1| alanine racemase [Streptococcus agalactiae A909]
 gi|77159428|gb|EAO70593.1| alanine racemase [Streptococcus agalactiae 515]
 gi|77161542|gb|EAO72545.1| alanine racemase [Streptococcus agalactiae CJB111]
          Length = 366

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 27/377 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   R  IDL A+ NN  S+      + +T AVVK NAYG G  +++  + +  V  F V
Sbjct: 6   HRPTRALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKYIESI-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I VL  + P Q  +  + N+   ++S+  L             
Sbjct: 65  SNLDEAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAVDLSGL 124

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++VD+G  R+G+  L E          +    +  I +H A AD+  +   + QL  
Sbjct: 125 EVHIKVDSGMGRIGVRQLDEGNKLISELG-ESGASVKGIFTHFATADEADNCKFNQQLTF 183

Query: 182 FRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F+  IS           ++S+  L      F   R G+ +YG       ++  +P+   +
Sbjct: 184 FKDFISGLDNCPDLVHASNSATSLWHSETIFNAVRLGVVMYGLNPSGTDLDLPYPINPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+ ++ +++   G  V YG   ++T D  +    IGYADG+   + G           
Sbjct: 244 SLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGFS--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G +  I+G+++MD     +    +  +G  + + G      I   DVA    T
Sbjct: 295 ---VIVNGELCEIIGRVSMDQMTIRLPQKYT--IGTKVTLIGQQGSCNITTTDVAQKRQT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++L  +  R  ++Y
Sbjct: 350 INYEVLCLLSDRIPRYY 366


>gi|326802039|ref|YP_004319858.1| alanine racemase [Sphingobacterium sp. 21]
 gi|326552803|gb|ADZ81188.1| Alanine racemase [Sphingobacterium sp. 21]
          Length = 820

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 105/372 (28%), Positives = 161/372 (43%), Gaps = 25/372 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL++N +   +L     +   +VK  +YG G  +IA  L    V    V   +E
Sbjct: 460 LEINLNALEHNLNVYKSLLQQGTKLMVMVKAFSYGSGSFEIANLLQFNKVDYLTVAYADE 519

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE--KIIFDTNLIPVISSV-PQLTFYSKL-MSCGVSHP 123
           G+ LR       I V+    PG++  + + +  L P I S      F SKL      ++P
Sbjct: 520 GIALRKSGITLPIVVMS---PGEDTFEQMIEYRLEPEIYSFSELEAFISKLPSEKMEAYP 576

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERF 182
             ++VDTG +RLG    +               +  + SHLA +         S Q+  F
Sbjct: 577 VHIKVDTGMHRLGFEPDDVDRLLAKLKRTDKIVVKSVFSHLAASGIREHDNFTSEQIRLF 636

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
                             +A++S I   P   F + R GI LYG +    +S P+Q+V  
Sbjct: 637 DVFTQDLARGLGYHFIRHIANTSAISRFPQAQFDMVRLGIGLYGVSADEYRSLPLQSVTR 696

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               I  ++   AG+ V Y    +L+ D  IA   IGYADGY                  
Sbjct: 697 LRTGITQVKYIKAGDTVGYNRNGRLSGDGTIATVKIGYADGYSRRFGNGV---------- 746

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           GK  IKG +VP +G I MDM M D+T    ++ G+ + + G ++  + +A A GT  Y++
Sbjct: 747 GKMLIKGRLVPTVGDICMDMCMLDVTGI-DVKEGEEVLVMGEELSPETLAKAIGTIPYEI 805

Query: 358 LVRIGTRYAKFY 369
           L  I  R  + Y
Sbjct: 806 LTSISQRVRRVY 817


>gi|134288204|ref|YP_001110367.1| alanine racemase [Burkholderia vietnamiensis G4]
 gi|134132854|gb|ABO59564.1| alanine racemase [Burkholderia vietnamiensis G4]
          Length = 365

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 159/367 (43%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I    ++ N      L+  ++  AVVK NAYG G E++ P L +       +  
Sbjct: 3   RPIVARIFPKNVRENLGLARRLTCGSQVWAVVKANAYGHGIERVFPGLSD--ADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE V++R    +  I +L GI  P    ++ +  L   +  V QL   S+         
Sbjct: 61  LEEAVRVRALGWRKPILLLEGIFEPADLNVVVEHRLTVAVHCVDQLHMLSR-SEPRSPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            + +        +++H A A          Q + F 
Sbjct: 120 IQLKMNSGMNRLGFRPDMYRQAWEEASDMSSIANIGLMTHFANA---DEGEIDWQTDVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
                  G   SLA+S+G+L  P  H    RPG  LYG +      H    P++  ++ E
Sbjct: 177 AATQGLPG-TRSLANSAGVLWHPQSHRDWVRPGTILYGTSPTGASRHVARFPLRAAMSLE 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II I+     E V YG     +R   I V A GYADGYP                G  
Sbjct: 236 SQIIGIQSISPSETVGYGRTFTGSRRMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   S  +G  ++++G ++ +DDVA ASGT  Y+L+ 
Sbjct: 285 VLVDGVRTQVVGRVSMDMMTVDLTPCPSANIGSRVELWGSNVSVDDVAEASGTIGYELIC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|88800247|ref|ZP_01115814.1| alanine racemase [Reinekea sp. MED297]
 gi|88776962|gb|EAR08170.1| alanine racemase [Reinekea sp. MED297]
          Length = 358

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 107/373 (28%), Positives = 168/373 (45%), Gaps = 22/373 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   R  I  +AL +N   +   +  A   AV+K NAYG G +  A AL       F V+
Sbjct: 2   SRGTRALISRSALTHNLGRVRHYAPQANIWAVIKANAYGHGADVAAEALSA--ADGFAVS 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           S++E + LR       I +L G+             L  V+ S  Q+    +  +     
Sbjct: 60  SLDEAIALRDSGVSHPILLLSGVTQADHWAEAAALGLHCVVHSRTQVEQI-RTQTLPSPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLER 181
              L++D+G +RLGL+ +                +   ++H+A AD P        Q E 
Sbjct: 119 SVWLKIDSGMHRLGLTPENVPAAFSALSQVSNVSVIGALTHMASADVPERDNATRQQFEV 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           F+        ++ S+ +S+ IL   +      RPGI LYG T         + +Q V+  
Sbjct: 179 FQAASPA--TLQTSVGNSATILRHADCVGDWVRPGIMLYGATPTTEASAADYGLQPVMAF 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           EA +I +R   AGE V YG + + +R + IA  A GY DGYP                G 
Sbjct: 237 EAPVIAVRDIAAGESVGYGHRWQASRPARIATLAAGYGDGYPRHA-----------PDGT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
             ++ G  VPI G+++MD+   D++  S  ++VGD  Q++GP++ +DDVA   GT  Y+L
Sbjct: 286 PVWLGGQRVPIAGRVSMDLITVDVSLLSEEVKVGDMAQLWGPELPVDDVAEHIGTIGYEL 345

Query: 358 LVRIGTRYAKFYT 370
           L R+  R  K + 
Sbjct: 346 LTRLSLRVPKVFV 358


>gi|325688113|gb|EGD30132.1| alanine racemase [Streptococcus sanguinis SK72]
          Length = 369

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIAFNIRQLSAHLPQMTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAREAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLTRF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LISELVHVKEVEAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  S  +  G  + + G      I + DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITVTDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|302536293|ref|ZP_07288635.1| alanine racemase [Streptomyces sp. C]
 gi|302445188|gb|EFL17004.1| alanine racemase [Streptomyces sp. C]
          Length = 378

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 104/378 (27%), Positives = 169/378 (44%), Gaps = 29/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +IDL A+++N  ++ A +  A   A+VK NAYG G  + A A   AG       + EE 
Sbjct: 10  AEIDLDAVRDNVRALRARAPRAELMAIVKSNAYGHGAVQCARAAQEAGAGWLGTATPEEA 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127
           + LR    + RI        G  +   + +L   +S +       +   + G      L+
Sbjct: 70  LALRDAGIRGRIMCWLWTPGGPWREAVEADLDVSVSGMWALDEVRAAARAAGRPARIQLK 129

Query: 128 VDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            DTG  R G    +  +       +  +   +++ + SH ACAD+P      +QL+ FR 
Sbjct: 130 ADTGLGRNGCQPADWAELVGAAVAAQAEGTVRVTGVWSHFACADEPGHPSIRLQLDAFRD 189

Query: 185 LISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TV 235
           ++++   +G++     +A+S   L  P  HF L R GI++YG +       P Q      
Sbjct: 190 MLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGIAVYGVSPSPELGTPAQLGLRPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +A + L++   AG  VSYG       ++ +A+   GYADG P   SG          
Sbjct: 250 MTLKASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGR--------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             G   + G +    G+I MD  + D+ + L  E GD   IFG     +   +D A A+G
Sbjct: 301 --GPVLVAGKVRRAAGRIAMDQFVVDLGEDL-AEAGDEAVIFGDAERGEPTAEDWAQAAG 357

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+++ RIG R  + Y
Sbjct: 358 TIAYEIVTRIGGRVPRVY 375


>gi|229829044|ref|ZP_04455113.1| hypothetical protein GCWU000342_01129 [Shuttleworthia satelles DSM
           14600]
 gi|229792207|gb|EEP28321.1| hypothetical protein GCWU000342_01129 [Shuttleworthia satelles DSM
           14600]
          Length = 387

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 180/382 (47%), Gaps = 27/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFF 61
           ++ + + IDL A++ N  +M + +  + R  AVVK +AYG G  +IA  L  +  V  + 
Sbjct: 3   HKRVWMDIDLDAVRANVDAMFDRMRPDCRMMAVVKADAYGHGAREIAALLEPDQRVFGYA 62

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
           V +V+E  +LR +     I +L    P +   +    + P I S      + +  S  G+
Sbjct: 63  VATVDEAYELRRHQISKPILILGYSFPEEYPAMVRLGIRPAIFSYESALAFDRAASQAGM 122

Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             P  +++DTG +R+G  + +E L         K  ++  I +H A AD+        Q 
Sbjct: 123 IAPVHIKIDTGMSRIGFQVDEEDLSQAARIAQLKHLRMEGIFTHFARADEKDKSHAYAQA 182

Query: 180 ERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232
           + F+  I   +  G+E      ++S+ I+  P  +  + R GISLYG   +++++ + P+
Sbjct: 183 DLFQQAIDRLERAGVEFEIRHCSNSASIMELPELNMDMVRAGISLYGLWPSEEMDPNFPL 242

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              ++  + I  I+    G  +SYGG  ++   + IA   +GYADGY   LS        
Sbjct: 243 SAAMSLGSHITHIKTLGEGRCISYGGTYQVKGKAKIATIPVGYADGYARGLSNR------ 296

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G   I+G   PI+G+I MD  M D++    I VG+ + + G D    I L+++  
Sbjct: 297 -----GYVLIQGKRAPIVGRICMDQFMVDVSAFDHIAVGEKVTLLGEDGKERISLEELGR 351

Query: 349 ASGTTNYDLLVRIG-TRYAKFY 369
            SG  NY+    +G  R  K +
Sbjct: 352 LSGRFNYEFACLLGNRRIPKVF 373


>gi|324990138|gb|EGC22076.1| alanine racemase [Streptococcus sanguinis SK353]
          Length = 369

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 144/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLDPSGRVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  S  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
 gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
          Length = 824

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 152/371 (40%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL A+  N +   + +    +   +VK +AYG G  +IA  L + GV    V   +E
Sbjct: 465 LEVDLAAIAANLNYFRSFMKPETKIVCMVKASAYGAGSVEIAKTLQDRGVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR     + I ++          +F  +L P +     L    +        + P  
Sbjct: 525 GADLRKAGITSNIIIMNPEM-SSFNTLFAYDLEPEVYDFSLLEALIRAAKQQGITNFPIH 583

Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG  RLG     +         ++       + SH   +D P+    +  Q E F 
Sbjct: 584 IKLDTGMKRLGFDPLHDMPALIDRLHHQAALIPRSVFSHFVGSDSPAFDAFSDHQFELFD 643

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P  H  + R G+ LYG     N  H +  V T 
Sbjct: 644 KASQQLQAAFSHKILRHICNSAGIERFPQRHLDMVRLGLGLYGVDPIDN--HIINNVTTL 701

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ IR   AGE V Y  +  L R+S IA   IGYADG    L               
Sbjct: 702 KTTILQIRDVQAGETVGYSRKGVLERNSRIAAIPIGYADGLNRHLGNRR----------A 751

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+TD    + GD +++FGP + +  ++ A  T  Y++L
Sbjct: 752 YCLVNGRKAYYVGNICMDVCMIDVTDIP-CKEGDSVEVFGPHLPITVLSDALETIPYEIL 810

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 811 TSVSNRVKRIY 821


>gi|306835298|ref|ZP_07468326.1| alanine racemase [Corynebacterium accolens ATCC 49726]
 gi|304568818|gb|EFM44355.1| alanine racemase [Corynebacterium accolens ATCC 49726]
          Length = 365

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 161/372 (43%), Gaps = 22/372 (5%)

Query: 6   FLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            L+  IDL A+ +N   +   +  + +   VVK +AYG G E++ P +  AG     V +
Sbjct: 1   MLKTTIDLAAIAHNVRLIKEKIGPDVKLMCVVKADAYGHGAERVVPVMLEAGADSIGVAT 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + E V+LR     + I           +      +   ++S  Q     KL+   +    
Sbjct: 61  LTEAVQLRRMGVDSPIAAWIWQSDQVLEEALACGIQIAVNSPAQ---AQKLVEAEIPAEI 117

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++V+TG +R G+   +  +            +  ++SH ACADDP +  N  Q E FR 
Sbjct: 118 YIKVETGMHRSGVDKADWDEVFALLREAPHITVLGLMSHFACADDPDNAHNDAQEEEFRR 177

Query: 185 LI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            +  +H  G+E     LA+S   L  P+ HF+  R GI+ YG      + H ++  +T  
Sbjct: 178 ALDAAHAAGLECPVNHLANSPATLSRPSAHFEQVRVGIACYGLEPIAGRDHGLRPAMTWS 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +  ++     E  SYG      +   +A    GYADG P    G             +
Sbjct: 238 GNVFGVKPIDKDEATSYGRTWSADKPGFLATVDCGYADGLPRAYQGHL-----------Q 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357
             I G + P +G++ MD  + D+ D+   I  GD + IFG   +   ++A A GT NY++
Sbjct: 287 VGIDGRLYPQVGRVCMDQIVVDLGDNPHGIAPGDEVTIFGQGGMSATELADAVGTINYEV 346

Query: 358 LVRIGTRYAKFY 369
           + R   R  + Y
Sbjct: 347 VCRPAGRTEREY 358


>gi|294793102|ref|ZP_06758248.1| alanine racemase [Veillonella sp. 6_1_27]
 gi|294794860|ref|ZP_06759995.1| alanine racemase [Veillonella sp. 3_1_44]
 gi|294454222|gb|EFG22596.1| alanine racemase [Veillonella sp. 3_1_44]
 gi|294456047|gb|EFG24411.1| alanine racemase [Veillonella sp. 6_1_27]
          Length = 374

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 170/382 (44%), Gaps = 25/382 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           ++     L I+ + ++ N   +  +L   + + AV+K N YG G   +       G +  
Sbjct: 3   NTMRPTYLTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESL 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119
            V   EE V LR       I++L    P   +++ DTN IP +     L   +K+     
Sbjct: 63  AVAIPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLESLNKVADNHD 122

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           +    A+ VDTG +R+G+  ++A++F     + +  ++    SH++ AD         Q 
Sbjct: 123 MIIRVAVAVDTGMHRIGIKPEDAIEFIKRIESYENLEIDGFFSHMSNADAADQSHAHSQT 182

Query: 180 ERFRTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--P 231
           ++F  ++   +          SLA+S+G+L   +  F   RPGI  YG    ++  +   
Sbjct: 183 QKFHRMVDEIRAFRPEADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLG 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++  + ++ ++   AGE + YG     T    IA   +GYADGYP +LS       
Sbjct: 243 LKPVLSFHSEVVHVQHIPAGEGIGYGSTYITTEPMTIATIPVGYADGYPRSLSNR----- 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 G   I G   P++G+I MD  M  + D+++++ GD + + G      I   ++A
Sbjct: 298 ------GTVLIHGTRCPVVGRICMDQFMVSVPDTITVKPGDKVVLLGSQGHESISALEIA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             + T  Y++      R  + Y
Sbjct: 352 ALASTIPYEIFCGFSERVPRQY 373


>gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 840

 Score =  358 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 151/372 (40%), Gaps = 27/372 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + L    +   +VK +AYG G  +IA  L         V   +E
Sbjct: 482 LEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 541

Query: 68  GVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           G  LR     A I ++    P     K +FD  L P + +   L    K        + P
Sbjct: 542 GSDLRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFP 598

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF 182
             +++DTG +RLG   ++         N+       + SH   +D P        Q+ER+
Sbjct: 599 IHVKLDTGMHRLGFEEKDIPQLIRRLKNQNAVIPRSVFSHFVGSDSPQFDAFTRQQIERY 658

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
             + +  +      I   + +++GI   P   F + R GI LYG +   N       V T
Sbjct: 659 EHMSTELQEAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDNSVINN--VST 716

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I+ IR     + V Y  +  L R S IA   IGYADG    L              
Sbjct: 717 LKTTILQIRDVAEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLGCGH---------- 766

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           G   + G   P +G I MD+ M D+TD      GD   IFG ++ +  ++    T  Y++
Sbjct: 767 GYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAVIFGDELPITVLSDTLDTIPYEV 825

Query: 358 LVRIGTRYAKFY 369
           L  I TR  + Y
Sbjct: 826 LTGISTRVKRVY 837


>gi|188595863|pdb|2VD9|A Chain A, The Crystal Structure Of Alanine Racemase From Bacillus
           Anthracis (Ba0252) With Bound L-Ala-P
 gi|188595864|pdb|2VD9|B Chain B, The Crystal Structure Of Alanine Racemase From Bacillus
           Anthracis (Ba0252) With Bound L-Ala-P
          Length = 391

 Score =  358 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 154/387 (39%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 3   MEEAPFYRDTWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVKGNAYGHDYVPVAXIALEAG 62

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +     L 
Sbjct: 63  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQXEWVDEAIXLW 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  + E   F  +       +L  + +H A AD+  +   
Sbjct: 123 DGSSTMXYHINFDSGMGRIGIRERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYF 182

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S              A+S+  L      F   R GI++YG +  +    
Sbjct: 183 DXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 242

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++    +  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 243 FLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGF 302

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 303 ------------EVLVNGXRVPIVGRVTMDQFMIHLP--CEVPLGTXVTLIGRQGDEYIS 348

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 349 ATEVAEYSGTINYEIITTISFRVPRIF 375


>gi|220924500|ref|YP_002499802.1| alanine racemase [Methylobacterium nodulans ORS 2060]
 gi|254802370|sp|B8IEC7|ALR_METNO RecName: Full=Alanine racemase
 gi|219949107|gb|ACL59499.1| alanine racemase [Methylobacterium nodulans ORS 2060]
          Length = 370

 Score =  358 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 194/370 (52%), Gaps = 15/370 (4%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S+   RL IDL AL  NW  + A +  A  AAV+K +AYG G  ++APAL++AG + FFV
Sbjct: 5   SSHGARLTIDLGALAANWRRLAAEAAGAECAAVIKADAYGCGIAQVAPALWDAGCRTFFV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
             + E  + R     A I+VL G  PG           PV+ S  ++  +++   S G  
Sbjct: 65  AHLSEAERTRAVLSDATIYVLNGFPPGSAPAYRAMGFRPVLGSRSEIAEWAQACRSLGER 124

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P AL VDTG NRLGL+  EA+D   ++      Q +L++SHL  A+ P   + + Q+  
Sbjct: 125 LPAALHVDTGMNRLGLNPAEAIDLAGDAV-LGAFQPTLLMSHLVSAEVPGDAITARQIAE 183

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           F  +   Y  + ASLA+S+GI LG     ++ RPG +LYGG     + +PM+ VV  EA 
Sbjct: 184 FARVRMAYPALPASLANSAGIFLGKAARHEIVRPGYALYGGNPTPERENPMRPVVRLEAA 243

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I+ +R+  AGE   Y  +       L+A  ++GYADGYP   SG             +  
Sbjct: 244 ILQLREVAAGETAGYNARWTAPGPRLLATLSLGYADGYPRAGSGR-----------AEAL 292

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           + G   P +G I+MD+ + D+T +    +  G  + + G  + LD+V   +GT  Y++L 
Sbjct: 293 VGGVRCPFVGTISMDLVILDVTQAPPEAVRRGAPVVLIGDGLTLDEVGQRAGTIGYEILT 352

Query: 360 RIGTRYAKFY 369
            +G+RY + Y
Sbjct: 353 NLGSRYDRHY 362


>gi|329117453|ref|ZP_08246170.1| alanine racemase [Streptococcus parauberis NCFD 2020]
 gi|326907858|gb|EGE54772.1| alanine racemase [Streptococcus parauberis NCFD 2020]
          Length = 367

 Score =  358 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 159/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     K++L A+K+N   + +      +  AVVK NAYG G  ++A A  +  +  + V
Sbjct: 6   HRPTVAKVNLNAIKDNIKQVQSHIPTGKKAYAVVKANAYGHGAVEVAKA-IDPDIDAYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  I   Q  +  + N+   +SS+  L    +  +     
Sbjct: 65  SNLDEALELRQAGITKEILILGIILADQLALAIENNVTLTVSSLEWLEDAKQSGADLSKL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+VD+G  R+G+      +    +   +   +  + +H A AD+ ++     QL  F
Sbjct: 125 HVHLKVDSGMGRIGVRSLSEANALIAALLAEDSHIDGVFTHFATADEANADKFKQQLHFF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             L+       A    ++S+  L      F   R GI +YG       ++  +P+   ++
Sbjct: 185 TELVESLDHKPALVHASNSATSLWHSETIFNAVRLGIVIYGLNPSGTDLDLPYPLTAALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E R++ ++   AG+ V YG   +     ++    IGYADG+   + G            
Sbjct: 245 LETRLVHVKTINAGDTVGYGATYQAKEAEVVGTIPIGYADGWTRDMQGFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G    I+G+++MD     +       +G  + + G D    I   DVA   GT 
Sbjct: 295 --VLVDGQACEIIGRVSMDQVTIRLPKVYP--IGTKVTLIGQDGSSVISATDVADKRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCVLSDRVPRKY 366


>gi|324993504|gb|EGC25424.1| alanine racemase [Streptococcus sanguinis SK405]
          Length = 369

 Score =  358 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 144/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLDWLDLALTAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVTPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  S  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|255007708|ref|ZP_05279834.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis 3_1_12]
          Length = 831

 Score =  358 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 151/372 (40%), Gaps = 27/372 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + L    +   +VK +AYG G  +IA  L         V   +E
Sbjct: 473 LEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 532

Query: 68  GVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           G  LR     A I ++    P     K +FD  L P + +   L    K        + P
Sbjct: 533 GSDLRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFP 589

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF 182
             +++DTG +RLG   ++         N+       + SH   +D P        Q+ER+
Sbjct: 590 IHVKLDTGMHRLGFEEKDIPQLIRRLKNQNAVIPRSVFSHFVGSDSPQFDAFTRQQIERY 649

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
             + +  +      I   + +++GI   P   F + R GI LYG +   N       V T
Sbjct: 650 EHMSTELQEAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDNSVINN--VST 707

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I+ IR     + V Y  +  L R S IA   IGYADG    L              
Sbjct: 708 LKTTILQIRDVAEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLGCGH---------- 757

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           G   + G   P +G I MD+ M D+TD      GD   IFG ++ +  ++    T  Y++
Sbjct: 758 GYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAVIFGDELPITVLSDTLDTIPYEV 816

Query: 358 LVRIGTRYAKFY 369
           L  I TR  + Y
Sbjct: 817 LTGISTRVKRVY 828


>gi|161511189|ref|NP_813012.2| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
 gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
          Length = 849

 Score =  358 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 148/373 (39%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK  AYG G  +IA  L    V    V   +
Sbjct: 490 LEVNLGAMVANLNHYRSMLRHPETKMICMVKAAAYGAGSYEIAKTLQEHHVDYLAVAVAD 549

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     + I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 550 EGSELRKAGITSSIIIM---DPELTSFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 606

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG S+ E         ++       + SH   +D          Q+E 
Sbjct: 607 PIHVKLDTGMHRLGFSVDEIPLLIRRLKSQNAVIPRSVFSHFVGSDSAQFDFFTRQQIEL 666

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   F + R GI LYG +   N       V 
Sbjct: 667 FEKGSQELQEAFSHKILRHICNTAGIERFPGAQFDMVRLGIGLYGVSPIDNSIINN--VS 724

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     LTR S IA   IGYADG    L             
Sbjct: 725 TLKTTILQIRDVPGEDTVGYSRMGHLTRPSRIAAIPIGYADGLNRHLG----------RG 774

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++   GT  Y+
Sbjct: 775 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDKAVIFGDDLPITTLSDKLGTIPYE 833

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 834 VLTSISNRVKRVY 846


>gi|194477028|ref|YP_002049207.1| alanine racemase [Paulinella chromatophora]
 gi|171192035|gb|ACB42997.1| alanine racemase [Paulinella chromatophora]
          Length = 395

 Score =  358 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 107/383 (27%), Positives = 175/383 (45%), Gaps = 27/383 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +H  +   ++I+ +A++ N   ++ L +  ++  AVVK + YG G    A +    G   
Sbjct: 17  LHPRQRAWVEINRSAIEFNTRVLHKLIAPTSQLMAVVKADGYGHGALNAAESAQAGGASS 76

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117
           + V +++EGV+LR    QA I VL   I   + +      L+P IS++ +      L S 
Sbjct: 77  YGVATLQEGVQLRQGGIQAPILVLGNLIQSEELRACHHWRLMPTISTIREALICETLGSG 136

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS--HVN 175
            G   P  L++DTG  RLG++ +E           K  +++ I SHLA AD  +      
Sbjct: 137 SGRIMPLHLKLDTGMTRLGVNWKEGSRIAKALSELKGIKIAGIYSHLAMADVSNKVETFT 196

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229
            +Q +RF  ++++            LA+S+G L     HF + R G++LYG       + 
Sbjct: 197 HLQKQRFLEVLNNLDNQNMNFGYRHLANSAGTLHDSGLHFDMVRVGLALYGQVPSSKLTS 256

Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +   AR+ LIR+  +G  VSYG     +  S +AV +IGYADG P  LSG   
Sbjct: 257 ITNLKPALQLRARVTLIREVPSGVGVSYGHGHTTSIPSRLAVISIGYADGIPRVLSGQM- 315

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344
                     +   KG  +  +GKITMD  + D T   S+ VG  + + G      I   
Sbjct: 316 ----------QALFKGQRLQQVGKITMDQLILDCTSVKSLTVGSIVTLLGKSGKHQINTF 365

Query: 345 DVALASGTTNYDLLVRIGTRYAK 367
           D +    T  +++L     R  +
Sbjct: 366 DWSEKCNTIPWEILCGFKHRLPR 388


>gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108]
 gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108]
          Length = 831

 Score =  358 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 148/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +     L    +   +VK +AYG G  +IA  L    V    V   +E
Sbjct: 473 LEVNLGAMIANLNYYRGKLKPETKIVCMVKASAYGAGSYEIAKTLQEHRVDYLAVAVADE 532

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G +LR     A I ++        K +FD  L P + S   L    K        + P  
Sbjct: 533 GSELRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFGLLEALIKEAEKEGITNFPVH 591

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + ++          +       + SH   +D P        Q+  F  
Sbjct: 592 VKLDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDSPQFDAFTRRQIVMFEK 651

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +S+GI   P   F + R G+ LYG +   N       V T +
Sbjct: 652 ASVELQEAFAHKILRHICNSAGIERFPGAQFDMVRLGLGLYGISPIDNSILNN--VSTLK 709

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ IR   A + V Y  +  L R S IA   IGYADG    L                
Sbjct: 710 TTILQIRDVPAEDTVGYSRKGHLNRPSRIAAIPIGYADGLNRHLGNGH----------AY 759

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G I MD+ M D+TD    + GD ++IFG  + +  ++    T  Y++L 
Sbjct: 760 CLVNGCKASYVGNICMDVCMIDVTDI-DCKEGDTVEIFGDHLPITVLSDVLDTIPYEVLT 818

Query: 360 RIGTRYAKFY 369
            + TR  + Y
Sbjct: 819 SVSTRVKRIY 828


>gi|307946726|ref|ZP_07662061.1| alanine racemase [Roseibium sp. TrichSKD4]
 gi|307770390|gb|EFO29616.1| alanine racemase [Roseibium sp. TrichSKD4]
          Length = 400

 Score =  358 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 143/367 (38%), Positives = 202/367 (55%), Gaps = 10/367 (2%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL IDL A+  NW  +   LS  A  AA VK +AYG G  + + ALY+ G + FFV    
Sbjct: 37  RLTIDLKAITANWTILKNKLSDRAECAATVKADAYGTGLTQASKALYDDGCRTFFVALPV 96

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           E +KL    P A I+VL G+ PG  K + +  + PV++S  ++  ++      G  HP A
Sbjct: 97  EALKLCRGMPDATIYVLDGLFPGTAKTLAENGIRPVLASTDEVQEWAAFCRETGQHHPAA 156

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VDTG +RLGLS  E  +   N   +++   SLI+SHLAC  DP   +NS QL+RF+ L
Sbjct: 157 LHVDTGIHRLGLSAAEFEEVMLNGDIREVFTPSLIMSHLACGADPEHPMNSEQLKRFKNL 216

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            S Y  I  SLA+S+G+ LG +YHF L RPGISLYGG       +PMQ  V  EARI++ 
Sbjct: 217 TSAYPDIPKSLANSAGVFLGEDYHFDLVRPGISLYGGKALDTMPNPMQPAVKVEARIMMA 276

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ + YG  +   RD  +AV A GYADG        D      +  G    I+G+
Sbjct: 277 RSVPQGDTIGYGAMQTARRDLRVAVVAAGYADGMMRRAGSTD------IAPGAYAMIEGH 330

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             P+LG+++MDM   D+TD        G ++++ GP +   D+A  + T +Y+ L  +G 
Sbjct: 331 KAPLLGRVSMDMITLDVTDISPHLTRRGAFVEMMGPQLAASDLAAYADTIDYEYLTNLGR 390

Query: 364 RYAKFYT 370
           R+ + Y 
Sbjct: 391 RFLRRYA 397


>gi|292571687|gb|ADE29602.1| Alanine racemase [Rickettsia prowazekii Rp22]
          Length = 404

 Score =  358 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 129/408 (31%), Positives = 188/408 (46%), Gaps = 58/408 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L+A+KNN+  +  +   A   AVVK N YGLG  +IA AL     Q FFV + EEG
Sbjct: 6   LEINLSAIKNNYRLLQDICKTALVGAVVKANGYGLGAMQIAKALIKENCQYFFVATSEEG 65

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           + LR        I VL G+       +   NL PV++++ Q+  + K  +  G   P  L
Sbjct: 66  INLRKVLNNDITILVLNGVFTHDALELIQYNLTPVLNNLSQIEIWQKFSNLKGKILPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NR GL+  E     ++    K   L  IISHLA +++  +  N +QL RF+  +
Sbjct: 126 HFNTGLNRFGLNSDEIEQLINDRDLLKGLDLQYIISHLAASEETGNPYNLIQLNRFKVYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----------------- 229
            ++  ++AS A+S GI LG +YHF L RPG +LYG    I  S                 
Sbjct: 186 EYFPNVKASFANSGGIFLGQDYHFDLARPGAALYGLNSLIEVSSNLSYTEEFESNTAALT 245

Query: 230 -------HPMQTV-------------------VTAEARIILIRKALAGELVSYGGQKKLT 263
                   P  +V                   VT +A II ++       + Y       
Sbjct: 246 TTACINKCPDVSVRLTPKLPLKGSHTVRLQNPVTLKAPIIDLQNLTLDSHIGYNMTFTTK 305

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
           RDS+IA   +GYADG+    S             G+ FI    VPI+G+++MD+   D+T
Sbjct: 306 RDSVIATLPLGYADGFSRNFSSQ-----------GEVFINSCSVPIVGRVSMDLINIDVT 354

Query: 324 DSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D    EV  G   +I G     D +A   GT  Y++L  +G+RY + Y
Sbjct: 355 DLPPSEVFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSRYKRKY 402


>gi|15603973|ref|NP_220488.1| alanine racemase [Rickettsia prowazekii str. Madrid E]
 gi|6647413|sp|Q9ZE52|ALR_RICPR RecName: Full=Alanine racemase
 gi|3860664|emb|CAA14565.1| ALANINE RACEMASE (alr) [Rickettsia prowazekii]
          Length = 404

 Score =  358 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 129/408 (31%), Positives = 188/408 (46%), Gaps = 58/408 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L+A+KNN+  +  +   A   AVVK N YGLG  +IA AL     Q FFV + EEG
Sbjct: 6   LEINLSAIKNNYRLLQDICKTALVGAVVKANGYGLGAMQIAKALIKENCQYFFVATSEEG 65

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           + LR        I VL G+       +   NL PV++++ Q+  + K  +  G   P  L
Sbjct: 66  INLRKVLNNDITILVLNGVFTHDALELIQYNLTPVLNNLSQIEIWQKFSNLKGKILPCYL 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NR GL+  E     ++    K   L  IISHLA +++  +  N +QL RF+  +
Sbjct: 126 HFNTGLNRFGLNSDEIEQLINDRDLLKGLDLQYIISHLAASEETGNPYNLIQLNRFKVYL 185

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----------------- 229
            ++  ++AS A+S GI LG +YHF L RPG +LYG    I  S                 
Sbjct: 186 EYFPNVKASFANSGGIFLGQDYHFDLARPGAALYGLNSLIEVSSNLSYTEEFESNTAALT 245

Query: 230 -------HPMQTV-------------------VTAEARIILIRKALAGELVSYGGQKKLT 263
                   P  +V                   VT +A II ++       + Y       
Sbjct: 246 TTACINKCPDVSVRLTPKLPLKGSYTVRLQNPVTLKAPIIDLQNLTLDSHIGYNMTFTTK 305

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
           RDS+IA   +GYADG+    S             G+ FI    VPI+G+++MD+   D+T
Sbjct: 306 RDSVIATLPLGYADGFSRNFSSQ-----------GEVFINSCSVPIVGRVSMDLINIDVT 354

Query: 324 DSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D    EV  G   +I G     D +A   GT  Y++L  +G+RY + Y
Sbjct: 355 DLPPSEVFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSRYKRKY 402


>gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 773

 Score =  358 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 148/373 (39%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK  AYG G  +IA  L    V    V   +
Sbjct: 414 LEVNLGAMVANLNHYRSMLRHPETKMICMVKAAAYGAGSYEIAKTLQEHHVDYLAVAVAD 473

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     + I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 474 EGSELRKAGITSSIIIM---DPELTSFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 530

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG S+ E         ++       + SH   +D          Q+E 
Sbjct: 531 PIHVKLDTGMHRLGFSVDEIPLLIRRLKSQNAVIPRSVFSHFVGSDSAQFDFFTRQQIEL 590

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   F + R GI LYG +   N       V 
Sbjct: 591 FEKGSQELQEAFSHKILRHICNTAGIERFPGAQFDMVRLGIGLYGVSPIDNSIINN--VS 648

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     LTR S IA   IGYADG    L             
Sbjct: 649 TLKTTILQIRDVPGEDTVGYSRMGHLTRPSRIAAIPIGYADGLNRHLG----------RG 698

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++   GT  Y+
Sbjct: 699 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDKAVIFGDDLPITTLSDKLGTIPYE 757

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 758 VLTSISNRVKRVY 770


>gi|120555293|ref|YP_959644.1| alanine racemase [Marinobacter aquaeolei VT8]
 gi|166969416|sp|A1U388|ALR_MARAV RecName: Full=Alanine racemase
 gi|120325142|gb|ABM19457.1| alanine racemase [Marinobacter aquaeolei VT8]
          Length = 357

 Score =  358 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 173/366 (47%), Gaps = 21/366 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +IDL ALK+N+     L+G A   AVVK + YG G   +A AL       F V  +EE 
Sbjct: 7   ARIDLDALKHNFRRARELAGTAYAMAVVKADGYGHGIRSVADALAPE-TSRFAVACIEEA 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + +R    +  + +L G H   +      +   PV+    QL++       G S  + ++
Sbjct: 66  IAIRGAGHRHSVVLLQGTHQKDDLAECERSGFEPVLHCQQQLSWLGA----GRSPRFWIK 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTLI 186
           V+TG NRLG   +E  +         L  L+   ++H ACADD  S +  +Q   F   +
Sbjct: 122 VNTGMNRLGFRPEELPEVMAGLEEAGLKHLAIGFVTHFACADDSDSEMTGLQTRIFERAV 181

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
           + +  +  S+ +S+         ++ +RPGI LYG +    K      +   +T +A +I
Sbjct: 182 APWPDLMRSVGNSAAHFRPNQPLYEWSRPGIMLYGASPMEGKTGAELGLCPAMTLQAPLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R   AGE V YG     ++D+ + + AIGYADGYP                G    ++
Sbjct: 242 TTRVVRAGESVGYGASWTASQDTRMGMVAIGYADGYPRHAG-----------TGTPAAVR 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  + +LG+++MDM   D++       GD ++++G  + +D+VA  +GT  Y+LL  + +
Sbjct: 291 GQRIRLLGRVSMDMLAVDLSAVPEAREGDMVELWGKTVSVDEVATCAGTIGYELLTGVTS 350

Query: 364 RYAKFY 369
           R  + +
Sbjct: 351 RVPRVH 356


>gi|328945680|gb|EGG39831.1| alanine racemase [Streptococcus sanguinis SK1087]
          Length = 369

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 144/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGISKKILVLGVSDLAALPLSRKGKVSLTVASLEWLDLALDAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEVIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDNVPPLVHASNSATSLWHSEIVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPRAYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|193077741|gb|ABO12603.2| alanine racemase 1 [Acinetobacter baumannii ATCC 17978]
          Length = 356

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 100/363 (27%), Positives = 171/363 (47%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 8   IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQ 127
           +R    +  + ++ G+    E  I  +     VI    Q  +  K     ++      ++
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPIAIEQKFECVIHHQQQFEWLIKHKQAYITQGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLHVKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   +K      ++ V+T  A II 
Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP                     I  
Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRA-----------YVKQNFVAIDS 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350

Query: 365 YAK 367
             +
Sbjct: 351 PVR 353


>gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 823

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 163/370 (44%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL A+ +N+      L+   +   +VK + YG G  ++A  L         V   EE
Sbjct: 465 LDVDLDAIVHNFKFYRSKLNPKTKMICMVKADGYGTGSSEVAKTLQYHKCDYLAVAVAEE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR    +  I VL     G E+ +   +L P + +   L  + K        ++P  
Sbjct: 525 GVILRKQGIKVPIIVLNSEVGGFEE-LATYSLEPEVYNFRILDAFIKEAKLQGITNYPIH 583

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + ++  +       +   ++  + SHLA ++  +       Q++ F+ 
Sbjct: 584 IKIDTGMHRLGFTEEDIPELMDRVKGQTGVRIQSVFSHLAASESWNFDDFTLQQIKTFKK 643

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           +    +      +   + +S+GI   P     + R GISLYG +      + ++ V T +
Sbjct: 644 IAGEVEDSCHYPVMKHILNSAGIERFPEEQLDMVRLGISLYGVSAS--GLNGLRNVCTLK 701

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+   AGE V YG +     D+ IA   IGYADG                   G 
Sbjct: 702 TTILQIKHIKAGETVGYGRKGHFDHDATIATIRIGYADGISRQFGNGV----------GV 751

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + GY V I+G I MD+TM D+T    ++ GD + IFG ++ + D+A    T  Y++  
Sbjct: 752 VLVNGYQVSIVGNICMDLTMIDVTGI-EVKEGDIVTIFGENLPVTDLAKKINTIPYEIFT 810

Query: 360 RIGTRYAKFY 369
            I  R    Y
Sbjct: 811 SISNRVKHIY 820


>gi|145596368|ref|YP_001160665.1| alanine racemase [Salinispora tropica CNB-440]
 gi|189027392|sp|A4XBI0|ALR_SALTO RecName: Full=Alanine racemase
 gi|145305705|gb|ABP56287.1| alanine racemase [Salinispora tropica CNB-440]
          Length = 372

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 157/377 (41%), Gaps = 27/377 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +++DL A++ N   + +    A   AVVK + YG G    A A  + G     V +++
Sbjct: 4   AEVRVDLDAIRENVSWLRS-GSAAELMAVVKGDGYGHGMVPAAHAALDGGADWLGVCTLD 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           E + LR       +                  +   ++SV Q           G      
Sbjct: 63  EALTLRRAGITVPVLAWLLAPGLPLHEGVTAGIDLGVASVAQLEEMVEAGRVAGRPARLH 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLERF 182
           L++DTG +R G ++ E  +    +   +     ++  + SH   AD P       QL  F
Sbjct: 123 LKIDTGLSRGGATISEWPELLDAAAKAQADGAVEVVGVWSHFVYADAPGHPTTDRQLAVF 182

Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
              +     +  +     LA+S+  L  P+ HF L RPG+++YG +    +   ++  +T
Sbjct: 183 HEGLGMVEKAGLRPRYRHLANSAATLTRPDAHFDLVRPGLAVYGLSPVAGERFGLRPAMT 242

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
           A AR++L ++  AG  VSYG      R S +AV  +GYADG P   S             
Sbjct: 243 ARARVMLTKQVPAGAGVSYGHTYTTDRASNLAVIPLGYADGVPRDASNS----------- 291

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353
           G   + G    I G++ MD  + D  D   +  GD   +FG     +   DD A A GT 
Sbjct: 292 GPVQLGGVRRTISGRVCMDQFVLDCGDDP-VAPGDVATLFGTGRDGEPTADDWAEAVGTI 350

Query: 354 NYDLLVRIGT-RYAKFY 369
           NY+++ R G+ R  + Y
Sbjct: 351 NYEIVTRFGSTRVPRCY 367


>gi|254468799|ref|ZP_05082205.1| alanine racemase [beta proteobacterium KB13]
 gi|207087609|gb|EDZ64892.1| alanine racemase [beta proteobacterium KB13]
          Length = 357

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 99/367 (26%), Positives = 165/367 (44%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L+  I+L   K+N + + +L+ +++  A +K NAYG G   +A A        F V +
Sbjct: 2   RPLKALINLDNAKHNLNYVRSLAPSSKIMATLKANAYGHGLTLMAGAFNE--ADAFSVLT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +E+ ++LR      +I +L G    ++ KI    +   V+ +  QL    +L        
Sbjct: 60  IEDAIELREAGFDKKILLLEGAFDEEDLKIAAAYHFNLVVHNDYQLALIRQLPHD-KQID 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NRLG S+           N       + +SH A AD  +      Q +   
Sbjct: 119 IHLKINTGMNRLGFSINAVNKVYKQLKNDVRINEIVFMSHFANADKTNG--TDGQYQEIE 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEAR 241
            L++ +     S+A+S+ ++     H    RPGI LYG T      K   ++ V+T  + 
Sbjct: 177 KLMNDFNE-PFSIANSAALISDNKTHADWVRPGIMLYGATPFDFSQKIPDLKPVMTLRSE 235

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I I++   G+ V YG      +D  IA  A GYADGYP                G    
Sbjct: 236 VISIQEIKKGQGVGYGEDFIADKDMRIATVACGYADGYPRHA-----------PTGTPVV 284

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I G     +G+++MDM   DITD  ++  G  ++++G  + +D+VA  + T  Y+LL  I
Sbjct: 285 IDGIKTKTVGRVSMDMLAVDITDLGNVNYGSMVELWGEQLSVDEVANNAKTVGYELLCAI 344

Query: 362 G--TRYA 366
              +R  
Sbjct: 345 SSASRVP 351


>gi|294649985|ref|ZP_06727373.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824078|gb|EFF82893.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194]
          Length = 356

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 104/364 (28%), Positives = 173/364 (47%), Gaps = 23/364 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID TAL+ N + +  L+ N++  ++VK NAYG G +    AL  A    F V  +EE ++
Sbjct: 8   IDSTALQYNLNRVKQLAPNSKIVSMVKANAYGHGIKDCLTAL--AATDAFGVACLEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R       I ++ G+    E I + +  L  V+    Q+ +          +     ++
Sbjct: 66  IRRLGYLQPITLIEGVFSADEMIHVIEQKLECVVHHAQQVEWLLAHKDQYQALDLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG  + E +        +    +  +  H A A D    +N  Q  +F  +  
Sbjct: 126 LNSGMNRLGFKVSEIITVIQRLKAEGFNCVLTM--HFANA-DTDHPLNEQQKMQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIIL 244
             + I AS  +S+ I   P  HF   RPGI LYG +   +K+     ++ V+T  A II 
Sbjct: 183 ACEPILASCCNSAAIYRYPELHFDFVRPGIMLYGASPFADKNVEALDLKPVMTFSAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           + +   GE V YG     T+D  IA+ +IGY DGYP                     I  
Sbjct: 243 LNQIQQGEYVGYGSTYVATQDMTIAIVSIGYGDGYPRA-----------YIKPNFVAIHD 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            ++P++G+++MDM   DI++ L+ E+G  ++++G    +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QLIPVIGRVSMDMIAIDISN-LNAEIGTKVELWGNTRLVDDVAEANGTIGYELLCRLSQR 350

Query: 365 YAKF 368
             + 
Sbjct: 351 PQRR 354


>gi|54293722|ref|YP_126137.1| hypothetical protein lpl0775 [Legionella pneumophila str. Lens]
 gi|81822433|sp|Q5WYG1|ALR_LEGPL RecName: Full=Alanine racemase
 gi|53753554|emb|CAH15009.1| hypothetical protein lpl0775 [Legionella pneumophila str. Lens]
          Length = 357

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 99/368 (26%), Positives = 175/368 (47%), Gaps = 21/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   RL I+ +AL +N   +  L+   +  A+VK NAYG G  ++AP L +  ++ F V 
Sbjct: 2   SRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + +R    +    +  G+    E  +  + +   V+    QL +  K        
Sbjct: 61  CLEEALAIRALGVETPCILFQGVFSSDELSVAVENDFACVLHHAKQLEWLIK-TPLPYPI 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++V+TG +RLG  + E             + +   +++HLACAD+P    N  Q+  
Sbjct: 120 KVWVKVNTGMHRLGFKIHELQKVMDALQTCTWVDKNIGLMTHLACADEPHRPENQQQISL 179

Query: 182 FRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVT 237
           F+ +     G    S+A+S+ I+  P+    + RPGI LYG +   N   +   +  V+ 
Sbjct: 180 FQEI--SIPGFRQRSIANSAAIISFPDSQADVVRPGIMLYGVSPFANQNARDLGLIPVMR 237

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I  I    +   V YGG  K  + S I + A GY DGYP  +S             
Sbjct: 238 FMSAISAIHDNPSFAQVGYGGTWKSDKPSRIGIVAAGYGDGYPRHIS-----------EK 286

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              +++G  V I+G+++MDM   D+T+   +E+GD ++++G  + ++ +A ++GT  Y+L
Sbjct: 287 TPVWVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGTIGYEL 346

Query: 358 LVRIGTRY 365
           L +I  R 
Sbjct: 347 LCQISERV 354


>gi|116333170|ref|YP_794697.1| alanine racemase [Lactobacillus brevis ATCC 367]
 gi|122270141|sp|Q03T06|ALR_LACBA RecName: Full=Alanine racemase
 gi|116098517|gb|ABJ63666.1| alanine racemase [Lactobacillus brevis ATCC 367]
          Length = 373

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 147/380 (38%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +L ID  AL +N  + +  L+       VVK N YG G  ++A     AG   F V
Sbjct: 6   HRPTQLVIDRQALHDNIQAEVTRLASGCELFMVVKANGYGHGAVQVAQVAKEAGATGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCG 119
             ++E ++LR       I VL    P    ++   ++   +++         Y  L    
Sbjct: 66  AILDEALELRAAGFNEPILVLGVTEPEDAPLMAQQHISATVAATDWLVAADAYLALAQPT 125

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L +DTG  R+G  +  E                  I +H A AD P       Q
Sbjct: 126 APLQVHLGLDTGMGRIGFKTTTELTTAVSYLATHATLNFEGIFTHFATADSPDETYFKQQ 185

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
           + +++TL +  K       +++S+  L     +  + R G++ YG       I   + ++
Sbjct: 186 VAKWQTLTAALKERPRYVHVSNSATSLWHAACNDNMVRFGVAGYGLNPSGTAIPAPYALK 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++  ++++  ++ +AGE V YG      +   +    IGYADGY   L G        
Sbjct: 246 PALSLTSQLVHSKQVVAGESVGYGATYTAQQTEWVGTVPIGYADGYERRLQGF------- 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   + G    I+G++ MD  M  +        G  + + G D    I L ++A  
Sbjct: 299 -----HVLVDGQACEIIGRVCMDQLMIRLPHDY--ARGTRVTLIGRDGDHVITLQEMADY 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T +Y+L     +R  + Y
Sbjct: 352 CQTIHYELACGFTSRLPRVY 371


>gi|330000338|ref|ZP_08303687.1| alanine racemase [Klebsiella sp. MS 92-3]
 gi|328538021|gb|EGF64193.1| alanine racemase [Klebsiella sp. MS 92-3]
          Length = 333

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 97/347 (27%), Positives = 154/347 (44%), Gaps = 26/347 (7%)

Query: 27  SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI 86
           +  +R  AVVK NAYG G  ++  AL       F + ++EE + LR    +  I +L G 
Sbjct: 2   APGSRLWAVVKANAYGHGVARVWSALSA--ADGFALLNLEEAILLREQGWKGPILLLEGF 59

Query: 87  HPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
               E  + D   L   + S  Q+    +           L+V++G NRLG   +     
Sbjct: 60  FHADELAVLDQYRLTTSVHSNWQIKALQQA-KLRAPLDIYLKVNSGMNRLGFMPERVHTV 118

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI--EASLASSSGIL 203
                         ++SH A A++P   V     E  R +    +G+    SLA+S+  L
Sbjct: 119 WQQLRAISNVGEMTLMSHFAEAENPQGIV-----EPMRRIEQAAEGLDCPRSLANSAATL 173

Query: 204 LGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
             P  HF   RPGI LYG +         +  ++ V+T  + II ++    GE + YGG 
Sbjct: 174 WHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMTLRSEIIGVQNLRPGEAIGYGGL 233

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
            + T++  I + A GYADGYP                G    + G     +G+++MDM  
Sbjct: 234 YRTTQEQRIGIVACGYADGYPR-----------VAPSGTPVLVDGVRTTTVGRVSMDMLA 282

Query: 320 FDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            D+T      +G  ++++G +IK+DDVA +SGT  Y+L+  +  R  
Sbjct: 283 VDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYELMCALAPRVP 329


>gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
 gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
          Length = 820

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 153/373 (41%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK +AYG G  +IA +L    V    V   +
Sbjct: 461 LEVNLGAMVANLNHYRSMLRHPETKVICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 520

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     A I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 521 EGSELRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 577

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG ++++         N+       + SH   +D P        Q+E 
Sbjct: 578 PIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQFDAFTRRQIEL 637

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P+  F + R GI LYG +   N    +  V 
Sbjct: 638 FEKGSQELQAAFSHKILRHICNTAGIERFPDAQFDMVRLGIGLYGVSPIDN--SIIHNVS 695

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 696 TLKTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHLG----------RG 745

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++    T  Y+
Sbjct: 746 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYE 804

Query: 357 LLVRIGTRYAKFY 369
           +L  I TR  + Y
Sbjct: 805 VLTSISTRVKRVY 817


>gi|260554562|ref|ZP_05826783.1| alanine racemase [Acinetobacter baumannii ATCC 19606]
 gi|260411104|gb|EEX04401.1| alanine racemase [Acinetobacter baumannii ATCC 19606]
          Length = 356

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 169/363 (46%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 8   IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R    +  + ++ G+    E  I  +     VI    Q  +  K             ++
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPIAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLHIKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   +K      ++ V+T  A II 
Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP                     I G
Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRA-----------YVKQNFVAIDG 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  +++ G    +DDVA A+GT  Y+LL R+ TR
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELLGNHRLVDDVAEANGTIGYELLCRLSTR 350

Query: 365 YAK 367
             +
Sbjct: 351 PVR 353


>gi|238061049|ref|ZP_04605758.1| alanine racemase [Micromonospora sp. ATCC 39149]
 gi|237882860|gb|EEP71688.1| alanine racemase [Micromonospora sp. ATCC 39149]
          Length = 372

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 103/377 (27%), Positives = 163/377 (43%), Gaps = 31/377 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A++ N   + A +  A   AVVK + YG G    A A  +AG     V +++E 
Sbjct: 6   VRVDLDAIRENVTRLRAGTS-AELMAVVKGDGYGHGMLPSARAALDAGADWLGVCTLDEA 64

Query: 69  VKLRLYTPQARIF--VLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           + LR     A +   +L    P  E +    +L     S+ Q           G      
Sbjct: 65  LALRRAGIDAPVLAWLLAPGLPLHEGVAVGVDLAAA--SLTQLAEMVEASQLAGRPARLH 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERF 182
           L++DTG  R G ++ +       +   +   L ++  + SH   AD P       QL  F
Sbjct: 123 LKIDTGLARGGATVADWPALLEAAAKAQADGLIEVVGVWSHFVYADLPGHPTTDRQLAIF 182

Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
              +     +  +     LA+S+  L  P+ HF L RPGI++YG +    +   ++  +T
Sbjct: 183 HEGLDMVERAGLRPRYRHLANSAATLTRPDTHFDLVRPGIAIYGLSPVAGERFGLRPAMT 242

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
           A AR++L ++  AG  VSYG       D+ +AV  +GYADG P   S             
Sbjct: 243 ARARVMLTKRVPAGSGVSYGHTYLTEADANLAVVPLGYADGVPRHASNT----------- 291

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353
           G   + G    + G++ MD  + D  D   +  GD   +FGP    +   DD A A GT 
Sbjct: 292 GPVQLAGRRRTVSGRVCMDQFVIDCGDDP-VAAGDVATLFGPGTGGEPTADDWAEAVGTI 350

Query: 354 NYDLLVRIGT-RYAKFY 369
           NY+++ R G  R  + Y
Sbjct: 351 NYEIVTRFGGVRVPRVY 367


>gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 830

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 153/373 (41%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK +AYG G  +IA +L    V    V   +
Sbjct: 471 LEVNLGAMVANLNHYRSMLRHPETKVICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 530

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     A I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 531 EGSELRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 587

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG ++++         N+       + SH   +D P        Q+E 
Sbjct: 588 PIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQFDAFTRRQIEL 647

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P+  F + R GI LYG +   N    +  V 
Sbjct: 648 FEKGSQELQAAFSHKILRHICNTAGIERFPDAQFDMVRLGIGLYGVSPIDN--SIIHNVS 705

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 706 TLKTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHLG----------RG 755

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++    T  Y+
Sbjct: 756 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYE 814

Query: 357 LLVRIGTRYAKFY 369
           +L  I TR  + Y
Sbjct: 815 VLTSISTRVKRVY 827


>gi|115358240|ref|YP_775378.1| alanine racemase [Burkholderia ambifaria AMMD]
 gi|115283528|gb|ABI89044.1| alanine racemase [Burkholderia ambifaria AMMD]
          Length = 373

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 154/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   +   A+++N   +   +  +R  AV+K NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHVRPDAVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P   ++     L   +    QL              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQLDLLIAAKPR-QPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          QLE+F 
Sbjct: 120 IQLKMNSGMNRLGYRPYAFRAAWERAAAAPSIGKITLMMHFANA---DEGEVDWQLEQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
              +   G E S ++S+ +L  P  H    RPG  LYG +      H    P+   +T  
Sbjct: 177 AATAGIPG-ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAAGHIADTPLMPAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++     E V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGMMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|107026636|ref|YP_624147.1| alanine racemase [Burkholderia cenocepacia AU 1054]
 gi|116692174|ref|YP_837707.1| alanine racemase [Burkholderia cenocepacia HI2424]
 gi|105896010|gb|ABF79174.1| alanine racemase [Burkholderia cenocepacia AU 1054]
 gi|116650174|gb|ABK10814.1| alanine racemase [Burkholderia cenocepacia HI2424]
          Length = 373

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 155/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +   +  +R  AV+K NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHIRPDAVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L G+  P   ++     L   +    QL              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGVFEPADVELADHHRLTVAVHCDEQLDLLIAAKPR-QPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            + +        ++ H A A          QL++F 
Sbjct: 120 IQLKMNSGMNRLGYRPAAFRAAWERAASAPSIGKITLMMHFANA---DEGEVDWQLDQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
              +   G E S+++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 ATTAGIPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLS 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++     E V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSRVELWGDQVKVDDVAEASGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|297624657|ref|YP_003706091.1| alanine racemase [Truepera radiovictrix DSM 17093]
 gi|297165837|gb|ADI15548.1| alanine racemase [Truepera radiovictrix DSM 17093]
          Length = 374

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 112/371 (30%), Positives = 172/371 (46%), Gaps = 21/371 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I L AL  N  S+ A +  A+    VK NAYG G  ++A  L   GV  F V + +E 
Sbjct: 10  AEISLRALARNLASLRART-RAQLLVPVKANAYGHGAPEVARQLERLGVPWFGVATADEA 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR     A I +   ++ G E +I    +   +          +           L+ 
Sbjct: 69  LELRGAGISADILIFGPVYEGLEALIAQ-GVALSVVDARSAEAVVRAAGSVPGARVHLKT 127

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  RLG  L   L         +   L  + +HLA AD+P S    VQL RF   ++ 
Sbjct: 128 DTGMGRLGEPLAATLKTAERLSRARGVTLEGLWTHLAAADEPDSSFTQVQLARFSDTLAA 187

Query: 189 Y--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
               GI       A+S+ +   P  HF L RPGI++YG          +  +  V+T  A
Sbjct: 188 LGRAGITVPLKHAANSAALFAHPASHFDLVRPGIAVYGYHASPFIAALAPELTPVMTLSA 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +  +++  AG  +SYGG  +  RD+ +A    GYADGYP  LS              + 
Sbjct: 248 PVTFVKRVAAGTPISYGGLWRAPRDTTVATVRFGYADGYPRGLSATPH---------ARV 298

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLV 359
            ++G + PI+G++ MD  M D+ D L++ VG+   +FGP+    +D+A   GT +Y+LL 
Sbjct: 299 RLQGRLCPIVGRVCMDQLMVDVGD-LTVTVGERAVLFGPEGPTAEDLAGGVGTISYELLT 357

Query: 360 RIGTRYAKFYT 370
           ++G R A+ Y 
Sbjct: 358 QLGRRVARSYV 368


>gi|326777201|ref|ZP_08236466.1| Alanine racemase [Streptomyces cf. griseus XylebKG-1]
 gi|326657534|gb|EGE42380.1| Alanine racemase [Streptomyces cf. griseus XylebKG-1]
          Length = 408

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 165/382 (43%), Gaps = 29/382 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R +IDL AL+ N   +   +  A+  AVVK + YG G    A A   AG       + 
Sbjct: 24  RARAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAAREAGATWLGTATP 83

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPY 124
           +E + LR      RI        G  +   + ++   +  +  L    +     G +   
Sbjct: 84  QEALALRAAGLDGRIMCWLWTPGGPWREAIEADIDVSVGGMWALREVVAAAAEAGRTARI 143

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G    +  +    +   +     +++ + SH ACAD+P     + QL  
Sbjct: 144 QLKADTGLGRGGCQPADWPELVGEALAAERAGRVEVTGLWSHFACADEPGHPSIAAQLAV 203

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232
           +R L+++   +G+E     LA+S   L  P  HF L R GI++YG +            +
Sbjct: 204 YRDLVAYAEKEGVEPEVRHLANSPATLTIPEAHFDLVRTGIAMYGVSPAPELGTSADLGL 263

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T  A + L++ A AG  +SYG     T  + + +  +GYADG P   SG       
Sbjct: 264 RPVMTLAASVALVKDAPAGHGISYGHHYTTTAGTTLGLIPVGYADGVPRHASGT------ 317

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                G   + G +  + G++ MD  + D+ D    E G    +FGP    +    D A 
Sbjct: 318 -----GPVLVGGKVRRVAGRVAMDQFVVDL-DGDRPEAGAEAVLFGPGDRGEPTAQDWAE 371

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
           A+GT  Y+++ RIGTR  + Y 
Sbjct: 372 AAGTIAYEIVTRIGTRVPRVYV 393


>gi|323353285|ref|ZP_08087818.1| alanine racemase [Streptococcus sanguinis VMC66]
 gi|322121231|gb|EFX92994.1| alanine racemase [Streptococcus sanguinis VMC66]
          Length = 369

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 144/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVTPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  S  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|169795500|ref|YP_001713293.1| alanine racemase 1, biosynthetic [Acinetobacter baumannii AYE]
 gi|213158560|ref|YP_002319858.1| alanine racemase [Acinetobacter baumannii AB0057]
 gi|215482987|ref|YP_002325192.1| alanine racemase [Acinetobacter baumannii AB307-0294]
 gi|301345094|ref|ZP_07225835.1| alanine racemase [Acinetobacter baumannii AB056]
 gi|301510834|ref|ZP_07236071.1| alanine racemase [Acinetobacter baumannii AB058]
 gi|301595321|ref|ZP_07240329.1| alanine racemase [Acinetobacter baumannii AB059]
 gi|169148427|emb|CAM86293.1| alanine racemase 1, biosynthetic [Acinetobacter baumannii AYE]
 gi|213057720|gb|ACJ42622.1| alanine racemase [Acinetobacter baumannii AB0057]
 gi|213987304|gb|ACJ57603.1| alanine racemase [Acinetobacter baumannii AB307-0294]
          Length = 356

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 99/363 (27%), Positives = 169/363 (46%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 8   IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R    +  + ++ G+    E  +  +     VI    Q  +  K             ++
Sbjct: 66  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLHIKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   +K      ++ V+T  A II 
Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP                     I  
Sbjct: 243 LNHIKAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRA-----------YVKQNFVAIDS 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350

Query: 365 YAK 367
             +
Sbjct: 351 PVR 353


>gi|331005749|ref|ZP_08329109.1| Alanine racemase [gamma proteobacterium IMCC1989]
 gi|330420438|gb|EGG94744.1| Alanine racemase [gamma proteobacterium IMCC1989]
          Length = 375

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 26/374 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL+AL +NW  +   ++ + R AAVVK NAYGLG   +A  L+  G + FFV +++E
Sbjct: 7   LTIDLSALVDNWKLLQQKVAPSTRCAAVVKANAYGLGIAPVAKVLFANGCRVFFVATLDE 66

Query: 68  GVKLR--LYTPQARIFVLYGIHPGQEKII-----FDTNLIPVISSVPQL-TFYSKLMSCG 119
           G++LR  L      I V  G+    EK +        +LIPV+ SV  +  +     +  
Sbjct: 67  GIELRTLLAKSDCEIIVFGGLFYDTEKSLCSAAWLHYSLIPVLYSVEHISRWLLFSSNVQ 126

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              P  ++VDTG +R+GLS+ E  +    S      Q S I+SH ACAD     +N  Q+
Sbjct: 127 KVLPSVVKVDTGMHRMGLSVGEFNEQL-LSDVMGRLQPSYIMSHFACADKSEHPLNRDQI 185

Query: 180 ERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
             F   +    S    I+ S+ +S+GI L  +  + L RPGI+LYGG    +K +PM+ V
Sbjct: 186 MAFDDCLIKIKSRLPDIQVSMCNSAGIFLDGDIFYDLVRPGIALYGGNPSPSKPNPMRPV 245

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           V     ++ ++   +G+ V YG      +++ +A+ + GYADG    LS           
Sbjct: 246 VKLTLGVMQLKVVASGDSVGYGASYIAQKETRLAIVSGGYADGLHRALSN---------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
             G  + KG  VPI+G+++MD  +FD+T+    +    I++ G    +DD+A A+GT  Y
Sbjct: 296 -AGFAYCKGQKVPIVGRVSMDTMVFDVTNVPGEDP-AMIEVLGECQTVDDLAQAAGTIAY 353

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +G+R+ + Y
Sbjct: 354 EILTSLGSRFQRNY 367


>gi|148238739|ref|YP_001224126.1| alanine racemase [Synechococcus sp. WH 7803]
 gi|147847278|emb|CAK22829.1| Alanine racemase [Synechococcus sp. WH 7803]
          Length = 393

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 173/379 (45%), Gaps = 26/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   +++   A+++N  ++  L +      AVVK + YG G E +A A    G     V
Sbjct: 23  RQRAWMEVSAQAVESNARALRQLLAPGCALMAVVKADGYGHGAETVARAAICGGATSLGV 82

Query: 63  TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
            +++EG++LR    +  + VL   I     +      L+P +SS+ +      L S  G 
Sbjct: 83  ATLQEGIELRRAGLELPVLVLGNLIQVEDLRACLHWQLMPTLSSMREALLCQNLASGSGR 142

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD----DPSSHVNS 176
                L++DTG  RLG   Q+    T          L  + SHLA AD      +  +  
Sbjct: 143 RFAVQLKLDTGMTRLGCDWQDGSRLTQAIQQLDQLILRGVYSHLALADGGPSGDAERITR 202

Query: 177 VQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPM 232
           +Q ERF  +   ++   ++  LA+S+G L   + H    R G++LYG      +N++ P+
Sbjct: 203 LQQERFEAVTRAHRSDNLQFHLANSAGTLRDRSLHHDQVRVGLALYGHAPSEHLNQTVPL 262

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +  +AR+ LIR   AG  VSYG +   +R S +AV  IGYADG    LSG  +    
Sbjct: 263 EPAMGVKARVSLIRDVPAGVGVSYGHRFVTSRPSRLAVVGIGYADGVSRCLSGQIA---- 318

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                      G  +P +G ITMD  M D TD  +++VGD + + G D    I   D A 
Sbjct: 319 -------VLHAGRRLPQVGAITMDQLMVDATDHPTLDVGDVVTLLGSDGDAVIHPQDWAE 371

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S +  +++L     R  +
Sbjct: 372 LSDSIPWEVLCSFKHRLPR 390


>gi|259047269|ref|ZP_05737670.1| alanine racemase [Granulicatella adiacens ATCC 49175]
 gi|259036045|gb|EEW37300.1| alanine racemase [Granulicatella adiacens ATCC 49175]
          Length = 371

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 156/378 (41%), Gaps = 27/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   R+ +DL+ +K N   +   L+ + +  AVVK NAYG G   +A A   AGVQ F V
Sbjct: 6   HRNTRVVVDLSIIKQNISKLKSKLNPSKQVYAVVKANAYGHGMIPVAKAALEAGVQGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +V+E + LR       + +L         ++   ++   + SV  L   + L+   +  
Sbjct: 66  ANVDEALALREAGIMEPVLILGLSRVEDAPLLASNHITAAVDSVEWLLQAAPLLKE-IPL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              + VD+G  R+G+  ++ L            +   + +H A AD+  +   + Q E+F
Sbjct: 125 KVHVAVDSGMGRIGVVNEKELTEVEAVLRNGPFEFEAMFTHFATADEEDTAHLTKQEEKF 184

Query: 183 RTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-----INKSHPMQTV 235
             +I     +      ++S+  +        + R GI LYG         +     +   
Sbjct: 185 NGMIGELEERPPHIHCSNSAYAIWHSAGDSDIIRYGIGLYGINPSNGDLCVEDEELLTPA 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  E  ++ ++K   G+ VSYG   K      +A   IGYADGY               +
Sbjct: 245 LQWETEMVKVKKLEIGDTVSYGATYKAKEPQWVATLPIGYADGYIRA------------Y 292

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
             G+  + G   PI+G++ MD  M  +     +  G  + + G     +I   ++A  + 
Sbjct: 293 NKGEVIVDGVRCPIIGRVCMDQCMVRLPHEYPV--GTKVTLLGKNKEEEITAIELAKRAD 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+++  I  R  + Y
Sbjct: 351 TIAYEVICMISDRVKREY 368


>gi|331265917|ref|YP_004325547.1| alanine racemase [Streptococcus oralis Uo5]
 gi|326682589|emb|CBZ00206.1| alanine racemase [Streptococcus oralis Uo5]
          Length = 367

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 158/376 (42%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N H M           AVVK NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALICLEAIQQNIHQMGVHIPEGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      RI +L         +  + ++   ++ +  +       +     
Sbjct: 65  SNIDEAIELRQARLSKRILILGVSEIEAIGLAKEYDITLTVAGLEWVRALVATGADLSGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  R+G       +   +   +   ++  I +H A AD+ S    + QLERF
Sbjct: 125 SVHLKIDSGMGRIGFREASEAEQAQDLLKQHGARVEGIFTHFATADEESDTYFNNQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           + +++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KAILASMKEVPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLTPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++  LAG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVLAGACMGYGATYQADSEQIIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA   GT 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKVYPL--GTKVTLIGTNGDKEITATQVAAYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
 gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
          Length = 826

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 154/371 (41%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + L    +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 467 LEVNLNAVVDNLNWYRSFLKPTTKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 526

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD +L P + S   +    K          P  
Sbjct: 527 GVTLRKNGITSNIMIMNPEMTS-FKTLFDYDLEPEVYSFRLMDALVKAAQKEGITGFPVH 585

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG   Q +  +       +       + SH   +D  +    ++ Q   F 
Sbjct: 586 IKLDTGMHRLGFDPQKDMDELIKRLKQQNAIIPRSVFSHFVGSDADNFDEFSAHQFALFD 645

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +SSGI   P     + R G+ LYG   + NK+     + T 
Sbjct: 646 EGSKKLQAAFSHKIIRHMDNSSGIEHFPERQMDMCRLGLGLYGINPRTNKTINN--ISTL 703

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R   AG+ V Y  +  + RDS+IA   IGYADG    L               
Sbjct: 704 KTTILQLRNVPAGDTVGYSRKGTIDRDSVIAAIPIGYADGLNRHLGNRHC---------- 753

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 754 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDTLDTIPYEVL 812

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 813 TTISNRVKRVY 823


>gi|15672826|ref|NP_267000.1| alanine racemase [Lactococcus lactis subsp. lactis Il1403]
 gi|281491333|ref|YP_003353313.1| alanine racemase [Lactococcus lactis subsp. lactis KF147]
 gi|20137230|sp|Q9CH94|ALR_LACLA RecName: Full=Alanine racemase
 gi|12723770|gb|AAK04942.1|AE006318_5 alanine racemase [Lactococcus lactis subsp. lactis Il1403]
 gi|281375074|gb|ADA64592.1| Alanine racemase [Lactococcus lactis subsp. lactis KF147]
          Length = 367

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 156/381 (40%), Gaps = 27/381 (7%)

Query: 1   MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M +  +      +DL A++NN       +  NA     VK +AYG G  +++ A+ +  V
Sbjct: 1   MKTSPHRNTSAIVDLKAIRNNIEKFKKHIHPNAEIWPAVKADAYGHGSVEVSKAVSDL-V 59

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V++++E ++LR +     I VL GI P    I    N+     S+  L    +  +
Sbjct: 60  GGFCVSNLDEAIELRNHLVTKPILVLSGIVPEDVDIAAALNISLTAPSLEWLKLVVQEEA 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                   + VD+G  R+G+   E  +      +K       I +H A AD         
Sbjct: 120 ELSDLKIHIGVDSGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADDTKFKD 179

Query: 178 QLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
           Q  RF  +++    K       +++  L        + R GIS+YG       +     +
Sbjct: 180 QQARFNKIMAGLSRKPKFVHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEI 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  + +  I+K  AGE V YG   + + ++ I    IGYADG+   + G       
Sbjct: 240 EPALSLVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 K  + G    I+G++ MD  M  +  S  +  G  + + G D    I   DVA 
Sbjct: 294 ------KVLVNGEFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKTNEITTTDVAD 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY++L  +  R  + Y
Sbjct: 346 WRGTINYEVLCLLSDRIKRIY 366


>gi|257893317|ref|ZP_05672970.1| alanine racemase [Enterococcus faecium 1,231,408]
 gi|257829696|gb|EEV56303.1| alanine racemase [Enterococcus faecium 1,231,408]
          Length = 373

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 152/380 (40%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I   A+  N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
           ++++EGV+LR       I +L  +      +    +L     +   L   + ++  G   
Sbjct: 66  SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTREWLQVAAAILEEGKLE 125

Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+ DTG  R+G  + +E  +        ++ +   + +H + AD P      +Q
Sbjct: 126 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQPDDTYWKLQ 185

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            ERF  ++     +     +++S+  L        + R G+++YG       + + +P+Q
Sbjct: 186 KERFMEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I ++K  AGE + YG          I    IGYADG+   + G        
Sbjct: 246 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   ++G     +G++ MD  M  +     +  G  + + G     +I + DVA  
Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++   +G R  + Y
Sbjct: 352 LGTIHYEVACGLGQRIPREY 371


>gi|332850737|ref|ZP_08432984.1| alanine racemase [Acinetobacter baumannii 6013150]
 gi|332866952|ref|ZP_08437278.1| alanine racemase [Acinetobacter baumannii 6013113]
 gi|332730574|gb|EGJ61890.1| alanine racemase [Acinetobacter baumannii 6013150]
 gi|332734333|gb|EGJ65460.1| alanine racemase [Acinetobacter baumannii 6013113]
          Length = 358

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 99/363 (27%), Positives = 169/363 (46%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 10  IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 67

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R    +  + ++ G+    E  +  +     VI    Q  +  K             ++
Sbjct: 68  IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 128 LNSGMNRLGFKNPEIIEVIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLHIKE 184

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   +K      ++ V+T  A II 
Sbjct: 185 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 244

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +   IA+ +IGY DGYP                     I  
Sbjct: 245 LNHIKAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRA-----------YVKQNFVAIDS 293

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P++G+++MDM   D+T++  +++G  ++++G    +DDVA A+GT  Y+LL R+ +R
Sbjct: 294 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 352

Query: 365 YAK 367
             +
Sbjct: 353 PVR 355


>gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 822

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + +    +   +VK +AYG G  +IA  L +  V    V   +E
Sbjct: 463 LEVNLNAVVDNLNYYRSFMKPETKMVCMVKASAYGAGAVEIAKTLQDHQVDYLAVAVADE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125
           GV LR     A I ++          +F+ +L P + S   L               P  
Sbjct: 523 GVDLRKAGITANIMIMNPEM-SSFPTLFEYDLEPEVYSFRLLEALIHEAEKEGVTHFPIH 581

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG   + +          +       + SH   +D       ++ Q E F 
Sbjct: 582 VKLDTGMHRLGFDPEKDMPLLVERLKRQSAVIPRSVFSHFVGSDSDDFDAFSARQYELFL 641

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
              +  +      I   + +S+GI   P+ H ++ R G+ LYG   + N+   +  + T 
Sbjct: 642 KGSAQLQQAYSHKILRHICNSAGIEHFPDRHLEMVRLGLGLYGINSRNNE--ILHNISTL 699

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ I +    + V Y  + +LTRDS IA   IGYADG    L               
Sbjct: 700 KTTILQIHEVPKEDTVGYSRKGRLTRDSRIAALPIGYADGLDRKLG----------CGRA 749

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++ A GT  Y++L
Sbjct: 750 YCLVNGRRAPYVGNICMDVCMIDVTDI-DCREGDTAIIFGDDLPVTVLSDAVGTIPYEIL 808

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 809 TGVSARVKRVY 819


>gi|257896498|ref|ZP_05676151.1| alanine racemase [Enterococcus faecium Com12]
 gi|257833063|gb|EEV59484.1| alanine racemase [Enterococcus faecium Com12]
          Length = 373

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 153/380 (40%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I   A+  N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
           ++++EGV+LR       I +L  +      +    +L     +   L   + ++  G   
Sbjct: 66  SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTREWLQVAAAILEEGKLE 125

Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+ DTG  R+G  + +E  +        ++ +   + +H + AD P     ++Q
Sbjct: 126 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQPDDTYWNLQ 185

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            ERF  ++     +     +++S+  L        + R G+++YG       + + +P+Q
Sbjct: 186 KERFMEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I ++K  AGE + YG          I    IGYADG+   + G        
Sbjct: 246 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   ++G     +G++ MD  M  +     +  G  + + G     +I + DVA  
Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++   +G R  + Y
Sbjct: 352 LGTIHYEVACGLGQRIPREY 371


>gi|256826606|ref|YP_003150565.1| alanine racemase [Cryptobacterium curtum DSM 15641]
 gi|256582749|gb|ACU93883.1| alanine racemase [Cryptobacterium curtum DSM 15641]
          Length = 421

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 171/386 (44%), Gaps = 31/386 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
             +  ++ID +A+++N H     L  N R  AVVK +AYG G  +++    N+G     V
Sbjct: 46  RRWAWVEIDRSAIRHNLHEAKRRLQPNCRLMAVVKADAYGHGAVEVSRTALNSGADALAV 105

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            +V+EG+ LR    +A I +L         ++ +  ++P +        Y ++     + 
Sbjct: 106 ATVDEGIALREAGLRAPILLLSEPPQAAIPLLLEYKIMPSVYRAEFALAYGEIADAHHLK 165

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P+ L V+TG NR+G+  ++ L+F       +  +     +H A AD P +    +Q++R
Sbjct: 166 APFHLAVNTGMNRIGVHAEDILEFERQISFHRALEQEGTFTHFATADCPENLDFRIQMKR 225

Query: 182 FRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234
           F   I   +  GI+      A+S+ +L  P  HF + R GI++YG     +      ++ 
Sbjct: 226 FTEAIEALRLAGIDPGIVHAANSAALLRYPESHFDMARIGIAMYGFHPCEETRDVVDLKP 285

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  ARI  IR    GE VSYG   +      I    +GYADG+   LSG  +      
Sbjct: 286 AMSVYARITDIRNVSVGEGVSYGLNYRSPGSVRICTIPLGYADGFNRLLSGKVN------ 339

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGPD----IKL 343
                  + G     +G I MD  MF++          L+ ++GD + + G        +
Sbjct: 340 -----VILDGQYCRQVGNICMDQCMFEVDMRTYGTHPRLNPQLGDIVTVVGNQGDAITTI 394

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
            ++A  + T  +++ +    R  + Y
Sbjct: 395 TEMAYLANTIEHEVAIGFAWRLPRLY 420


>gi|88703618|ref|ZP_01101334.1| alanine racemase [Congregibacter litoralis KT71]
 gi|88702332|gb|EAQ99435.1| alanine racemase [Congregibacter litoralis KT71]
          Length = 359

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 99/364 (27%), Positives = 158/364 (43%), Gaps = 18/364 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +I    L++N   +   +  +R  A VK +AYG G    + AL +  V  F V  + E 
Sbjct: 7   ARILTGNLRHNARRVREEAPRSRIMACVKADAYGHGITTASEALNDI-VDGFAVACISEA 65

Query: 69  VKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR    +  + +L G   P +       +L   ++   QL +  K           L+
Sbjct: 66  LALRDAGIKKPVLMLEGPQSPDEVPEAAHKDLTLCVNEWHQLEWLEKA-GLSAPLACWLK 124

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLG S Q   +       K      ++ +H + AD P  +    Q+  F  + +
Sbjct: 125 IDTGMHRLGFSPQRTAEALQRLERKAKNPELVLCTHFSSADLPKDNGVEAQVRAFDEVAA 184

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIIL 244
                  SLA+S+ IL  P  H    RPG  LYGG+        +  ++  +   A +I 
Sbjct: 185 TTAYAH-SLANSAAILTIPESHRHWVRPGYMLYGGSPLADAAAATLNLKPAMEFVAEVIS 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +R    GE V Y G+ +  R S IA  A GY DGYP                G   FI G
Sbjct: 244 VRDVSVGERVGYRGRWEARRPSRIATVAAGYGDGYPRHA-----------PDGTPVFING 292

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + P+ G+++MDM   D+T+   I VG    ++G +  +D+VA A+ T  Y++L  +  R
Sbjct: 293 KVAPLAGRVSMDMITVDVTEHPDIAVGAKAVLWGGEPTVDEVATAADTIGYEILAGMPKR 352

Query: 365 YAKF 368
             + 
Sbjct: 353 VPRV 356


>gi|256390195|ref|YP_003111759.1| alanine racemase [Catenulispora acidiphila DSM 44928]
 gi|256356421|gb|ACU69918.1| alanine racemase [Catenulispora acidiphila DSM 44928]
          Length = 397

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 100/390 (25%), Positives = 161/390 (41%), Gaps = 36/390 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGN------ARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
               +IDL A+++N   +  +         A   AVVK +AYG G    A A    G   
Sbjct: 16  RAEARIDLDAIRSNTRRLGQIVAETGSKSAAGVMAVVKADAYGHGAVPCARAAKQGGAAW 75

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118
                 EE ++LR       I        G    +    +     +   L    +    C
Sbjct: 76  LGTALPEEALQLRAAGLTGPILAWLHPAGGPWDELIVHEIDVTAYAPWVLEEITAAAQRC 135

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVN 175
           G+     L+VDTG  R G    + L+    +   +     +++ + SH ACAD+P     
Sbjct: 136 GIQARVQLKVDTGLGRGGTQPHDWLELVELAAKAEAAGHIRVTGVWSHFACADEPGHPSI 195

Query: 176 SVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             QL+ F   +     +  +     +A+S   L  P  HF L R G+++YG +   +   
Sbjct: 196 RAQLDVFALALAAADHAGLRPEVRHIANSPAALSLPEAHFDLVRAGLAVYGLSPLPDTTP 255

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++  +T  AR+ L++ A A   VSYG        + +A+  +GYADG P   S + 
Sbjct: 256 ADFGLRPAMTLTARVALVKNAPAEHGVSYGHIHHTAGPTTLALVPLGYADGLPRNSSNV- 314

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD---SLSIEVGDYIQIFGP----D 340
                     G+  + G    + G++ MD  + D+ D      + VGD + IFGP    +
Sbjct: 315 ----------GEVLVGGARHRVAGRMAMDQFVVDLGDPDAVHDVHVGDEVVIFGPGDRGE 364

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
              DD A A+GT NY+++ RIG R  + Y 
Sbjct: 365 PTADDWAQATGTLNYEIVTRIGPRVPRVYV 394


>gi|269797315|ref|YP_003311215.1| alanine racemase [Veillonella parvula DSM 2008]
 gi|269093944|gb|ACZ23935.1| alanine racemase [Veillonella parvula DSM 2008]
          Length = 370

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 93/379 (24%), Positives = 168/379 (44%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               L I+ + ++ N   +  +L   + + AV+K N YG G   +       G +   V 
Sbjct: 2   RPTYLTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
             EE V LR       I++L    P   +++ DTN IP +     L   +K+     +  
Sbjct: 62  IPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLESLNKVADNHDMII 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             A+ VDTG +R+G+  ++A++F     + +  ++    SH++ AD         Q ++F
Sbjct: 122 RVAVAVDTGMHRIGIKPEDAIEFIKRIESYENLEIDGFFSHMSNADAADQSHAHSQTQKF 181

Query: 183 RTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQT 234
             ++   +          SLA+S+G+L   +  F   RPGI  YG    ++  +   ++ 
Sbjct: 182 HRMVDEIRAFRPEADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + ++ ++   AGE + YG     T    IA   +GYADGYP +LS          
Sbjct: 242 VLSFHSEVVHVQHIPAGEGIGYGSTYITTEPMTIATIPVGYADGYPRSLSNR-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I G   P++G+I MD  M  + D+++++ GD + + G      I   ++A  +
Sbjct: 294 ---GTVLIHGTRCPVVGRICMDQFMVSVPDTITVKPGDKVVLLGSQGHESISALEIAALA 350

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++      R  + Y
Sbjct: 351 STIPYEIFCGFSERVPRQY 369


>gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
          Length = 846

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 153/373 (41%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK +AYG G  +IA +L    V    V   +
Sbjct: 487 LEVNLGAMVANLNHYRSMLRHPETKVICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     A I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 547 EGSELRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 603

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG ++++         N+       + SH   +D P        Q+E 
Sbjct: 604 PIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQFDAFTRRQIEL 663

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P+  F + R GI LYG +   N    +  V 
Sbjct: 664 FEKGSQELQAAFSHKILRHICNTAGIERFPDAQFDMVRLGIGLYGVSPIDN--SIIHNVS 721

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 722 TLKTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHLG----------RG 771

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++    T  Y+
Sbjct: 772 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYE 830

Query: 357 LLVRIGTRYAKFY 369
           +L  I TR  + Y
Sbjct: 831 VLTSISTRVKRVY 843


>gi|268595182|ref|ZP_06129349.1| alanine racemase [Neisseria gonorrhoeae 35/02]
 gi|268548571|gb|EEZ43989.1| alanine racemase [Neisseria gonorrhoeae 35/02]
          Length = 375

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 164/363 (45%), Gaps = 20/363 (5%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
            NEF+R   ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     
Sbjct: 20  RNEFMRPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADG 77

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSC 118
           F V +++EG++LR       I +L G+    E    +  +L P + +  QL         
Sbjct: 78  FAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHW 136

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L++D+G +R G    +           +     +  SH +CAD+P S +  +Q
Sbjct: 137 KKPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQ 196

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+  
Sbjct: 197 MEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGNDDRLKPVMRL 255

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             RI   R       + YG     ++ + + + A GYADGYP                  
Sbjct: 256 STRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNS 304

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+
Sbjct: 305 PVAVDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELM 363

Query: 359 VRI 361
             I
Sbjct: 364 CNI 366


>gi|253996549|ref|YP_003048613.1| alanine racemase [Methylotenera mobilis JLW8]
 gi|253983228|gb|ACT48086.1| alanine racemase [Methylotenera mobilis JLW8]
          Length = 361

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 101/363 (27%), Positives = 161/363 (44%), Gaps = 17/363 (4%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
            + L AL++N   ++  + +++  AVVK N YG G   +A  L       F V  + E +
Sbjct: 7   TVSLNALRHNLSVVHKFAPHSKIMAVVKANGYGHGLINVAHGLSA--ADGFAVLGINEAM 64

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q  I +L G+   QE  +  +  L  VI S PQL      +         L++
Sbjct: 65  DLRDAGFQQTILLLEGVFCAQELNVASNLGLNVVIHSQPQLEMLESAV-LNKPMHVHLKM 123

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-LERFRTLIS 187
           ++G NRLG   +            +      +++H A A          Q    F+T   
Sbjct: 124 NSGMNRLGFQPEAFNRAYERLLACENVADITLMTHFATA---DDETGIEQPYNLFKTTTQ 180

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIIL 244
               +  SLA+S+ IL  P  H    RPGI LYG +        ++ +   +   + II 
Sbjct: 181 GL-NLPVSLANSATILRHPKAHADWVRPGIMLYGASPVGDTAAATYGLMPAMQFTSEIIG 239

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +++  AGE V YG +   TR + I + A GYADGYP     +  + S     G    + G
Sbjct: 240 VQEVKAGETVGYGNRFTATRSTRIGIVACGYADGYPRHAGLVSGQSS-----GAPIAVAG 294

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +   LG+++MDM   D+TD  +  +G  ++++G  + +D VA AS T  Y+LL  +  R
Sbjct: 295 QLTNTLGRVSMDMLFCDLTDIPNANIGSPVELWGKQVPVDAVAAASDTVGYELLCAVAPR 354

Query: 365 YAK 367
              
Sbjct: 355 VPM 357


>gi|166999264|ref|ZP_02265105.1| alanine racemase [Burkholderia mallei PRL-20]
 gi|254179158|ref|ZP_04885810.1| alanine racemase [Burkholderia mallei ATCC 10399]
 gi|160694485|gb|EDP84495.1| alanine racemase [Burkholderia mallei ATCC 10399]
 gi|243064575|gb|EES46761.1| alanine racemase [Burkholderia mallei PRL-20]
          Length = 374

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 154/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  
Sbjct: 3   RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    Q    +   +      
Sbjct: 61  LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQFKLLTAAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANA---DEGEIDWQMSVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG      R+  I V A GYADGYP                G  
Sbjct: 236 SRIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+ + 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYEPMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565]
 gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565]
          Length = 852

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 149/373 (39%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK +AYG G  +IA  L    V    V   +
Sbjct: 493 LEVNLGAMVENLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKTLQEHHVDYLAVAVAD 552

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     + I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 553 EGSELRKAGITSSIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 609

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG   ++         N+       + SH   +D P        Q+E 
Sbjct: 610 PIHVKLDTGMHRLGFEAEDIPLLIRRLKNQNAVIPRSVFSHFVGSDSPQFDAFTRQQIEL 669

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   F + R GI LYG +   N    +  V 
Sbjct: 670 FEKGSQELQAAFSHKILRHICNTAGIERFPGAQFDMVRLGIGLYGVSPIDN--SIIHNVS 727

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 728 TLKTTILQIRDVPEEDTVGYSRMGHLIRPSRIAAIPIGYADGLNRHLG----------RG 777

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++    T  Y+
Sbjct: 778 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYE 836

Query: 357 LLVRIGTRYAKFY 369
           +L  I TR  + Y
Sbjct: 837 VLTSISTRVKRIY 849


>gi|268597531|ref|ZP_06131698.1| alanine racemase [Neisseria gonorrhoeae FA19]
 gi|291043413|ref|ZP_06569134.1| alanine racemase [Neisseria gonorrhoeae DGI2]
 gi|268551319|gb|EEZ46338.1| alanine racemase [Neisseria gonorrhoeae FA19]
 gi|291012649|gb|EFE04634.1| alanine racemase [Neisseria gonorrhoeae DGI2]
          Length = 375

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 164/363 (45%), Gaps = 20/363 (5%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
            NEF+R   ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     
Sbjct: 20  RNEFMRPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADG 77

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSC 118
           F V +++EG++LR       I +L G+    E    +  +L P + +  QL         
Sbjct: 78  FAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHW 136

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L++D+G +R G    +           +     +  SH +CAD+P S +  +Q
Sbjct: 137 KKPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQ 196

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+  
Sbjct: 197 MEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRL 255

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             RI   R       + YG     ++ + + + A GYADGYP                  
Sbjct: 256 STRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNS 304

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+
Sbjct: 305 PVAVDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELM 363

Query: 359 VRI 361
             I
Sbjct: 364 CNI 366


>gi|227550864|ref|ZP_03980913.1| alanine racemase [Enterococcus faecium TX1330]
 gi|293379277|ref|ZP_06625423.1| alanine racemase [Enterococcus faecium PC4.1]
 gi|227179962|gb|EEI60934.1| alanine racemase [Enterococcus faecium TX1330]
 gi|292642073|gb|EFF60237.1| alanine racemase [Enterococcus faecium PC4.1]
          Length = 374

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 153/380 (40%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I   A+  N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 7   HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 66

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
           ++++EGV+LR       I +L  +      +    +L     +   L   + ++  G   
Sbjct: 67  SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTREWLQVAAAILEEGKLE 126

Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+ DTG  R+G  + +E  +        ++ +   + +H + AD P     ++Q
Sbjct: 127 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQPDDTYWNLQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            ERF  ++     +     +++S+  L        + R G+++YG       + + +P+Q
Sbjct: 187 KERFMEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 246

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I ++K  AGE + YG          I    IGYADG+   + G        
Sbjct: 247 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   ++G     +G++ MD  M  +     +  G  + + G     +I + DVA  
Sbjct: 302 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 352

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++   +G R  + Y
Sbjct: 353 LGTIHYEVACGLGQRIPREY 372


>gi|319638630|ref|ZP_07993392.1| alanine racemase [Neisseria mucosa C102]
 gi|317400379|gb|EFV81038.1| alanine racemase [Neisseria mucosa C102]
          Length = 352

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 98/358 (27%), Positives = 162/358 (45%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L+ N+  +  L GN +  AV+K +AYG G  + A AL +     F V +
Sbjct: 2   RPLNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHALADI-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           V+EGV+LR    +  I +L G+    E    D  +L P I S  QL  ++          
Sbjct: 60  VDEGVELRQNGIKNPIVLLEGVFEAAEYADVDRYDLWPAIGSQWQLEAFAHH-EWQRPTT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G                +  +  +  SH ACAD+P + +  +QLE F 
Sbjct: 119 VWLKMDSGMHRAGFFPHNYAAAYTALKQSESVENIVKFSHFACADEPENGMTEMQLEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +   +    ++ V+   +R+ 
Sbjct: 179 LACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGSVDERLKPVMRLTSRVF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP   S                 I 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAID 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G    I+G+++MDM   ++  S    +G  ++++G  I +++VA  +G   Y++L  I
Sbjct: 287 GKRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVAEVAGMIPYEILCNI 343


>gi|167824787|ref|ZP_02456258.1| alanine racemase [Burkholderia pseudomallei 9]
 gi|226198963|ref|ZP_03794526.1| alanine racemase [Burkholderia pseudomallei Pakistan 9]
 gi|225929063|gb|EEH25087.1| alanine racemase [Burkholderia pseudomallei Pakistan 9]
          Length = 356

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 149/367 (40%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +  ++  A+VK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + A        + Q+  F 
Sbjct: 120 VQLKMNSGMNRLGYTPEKYRAAWERARACPGIGQITLMTHFSDA--DGERGVAEQMATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
                  G   S A+S+ +L  P  HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAQGIAGA-RSFANSAAVLWHPPAHFDWVRPGIMLYGASPSGRAADIADRGLKPTMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTLAKGQAVGYGSMFVAEDTMRIGVVACGYADGYPR-----------IAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA    T  Y+L+ 
Sbjct: 286 VVVDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|149369298|ref|ZP_01889150.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [unidentified eubacterium SCB49]
 gi|149356725|gb|EDM45280.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [unidentified eubacterium SCB49]
          Length = 367

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 161/378 (42%), Gaps = 23/378 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M       L+IDL AL+ N+H +   L  + +  AVVK N YG     IA  L +     
Sbjct: 1   MSKVTETTLEIDLNALRQNYHFIKSKLKPSTKMLAVVKANGYGSDGVIIAKELSSLDCDY 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V    EGV LR    +  I VL+ + P     I D  L P I S+  L  +       
Sbjct: 61  FAVAYAGEGVALRDAGIKTPILVLHPL-PVNFDTIIDNKLEPSIYSLKMLRDFIAFADSK 119

Query: 120 --VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNS 176
              ++P  L+ +TG NRLG    E      +       ++  I SHLA ++D +      
Sbjct: 120 NQKNYPIHLKFNTGLNRLGFIASEIETMLQHIAETSSVKICSIFSHLAASEDANETIFTQ 179

Query: 177 VQLERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            Q+++F+ +         Y+ I  +L ++SGIL  P   F + R GI +YG  +      
Sbjct: 180 NQIDQFQHISEEITTQIGYQPIRHTL-NTSGILNFPEAQFDMVRCGIGIYGYGNDPKFDK 238

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +  V++ +  I  I     G+ + Y  + + T     A   IG+ADG P +L       
Sbjct: 239 ELVPVLSLKTVISQIHHLREGDTIGYNRKGQATTALKTATLPIGHADGLPRSLG------ 292

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                     FI G   PI+G + MDM M +ITD      GD + IF      + +A   
Sbjct: 293 ----QGKASVFINGKAAPIIGNVCMDMIMVNITDI-ECNEGDEVIIFDKKHTAEMLAEQM 347

Query: 351 GTTNYDLLVRIGTRYAKF 368
            + +Y+LL  + +R  + 
Sbjct: 348 NSISYELLTGLSSRIKRI 365


>gi|238897886|ref|YP_002923565.1| alanine racemase 1, PLP-binding, biosynthetic [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|259710068|sp|C4K4C4|ALR_HAMD5 RecName: Full=Alanine racemase
 gi|229465643|gb|ACQ67417.1| alanine racemase 1, PLP-binding, biosynthetic [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 358

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 176/367 (47%), Gaps = 20/367 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             I+L +L++N   +   +  +R  AVVK NAYG G   +A AL N     F V  +EE 
Sbjct: 6   AIINLKSLRHNLEKIQQYAPKSRLMAVVKANAYGHGLLTVAQALKN--ADYFSVARIEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       I +L G    ++  +    ++  VI +  QL    K+          ++
Sbjct: 64  LTLRSGGIIKPILLLEGFFSLEDLAVLQVNHIETVIHNFEQLVALEKVR-LPEPVRVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+ L++A  F     N   + +   II+HL+  +     V   Q+  F   +
Sbjct: 123 IDTGMHRLGVRLEQADAFYQRLQNCPNVAKPIHIITHLSDVNPHHPVVTDQQIRSFDAFV 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
               G + S+A+S  ILL P  H  + RPGI+LYG +     I + + +  V+T ++ +I
Sbjct: 183 QGKPG-QKSIAASGAILLCPQSHRDVVRPGIALYGISPFEHFIGRDYGLLPVMTLQSPLI 241

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R+  AGE V Y G+      + + V AIGY DGYP            S   G   +I 
Sbjct: 242 AVREHKAGETVGYAGEWISQTATFLGVLAIGYGDGYP-----------QSAPTGTPVWIN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              VPI+G+++MDM   D+    + +VGD   ++G  + L+ VA   G T Y+L+ ++  
Sbjct: 291 DRQVPIVGRVSMDMISVDLGRDATDKVGDRAVLWGDQLSLEKVASYIGYTAYELVSKLTG 350

Query: 364 RYAKFYT 370
           R A  Y 
Sbjct: 351 RVAISYV 357


>gi|323465799|gb|ADX69486.1| Alanine racemase [Lactobacillus helveticus H10]
          Length = 376

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 146/381 (38%), Gaps = 30/381 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               +K++L A++ N  + M  L  N +  AVVK N YG G  ++A      G   F V 
Sbjct: 7   RPAVVKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
            ++E ++LR       I VL  + P    I    N+   + ++  L    K L    +  
Sbjct: 67  ILDEALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDTEKYLAKENLQL 126

Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +D+G  R+G +   E +       N     +  + +H A AD         Q E+
Sbjct: 127 KIHLGIDSGMGRIGFNEDDEFVAANKFLENNDNFFIEGMFAHFASADSDDETYFKHQCEK 186

Query: 182 FRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------- 232
           F+ + S    K     + +++  +        L R GI +YG     N S P        
Sbjct: 187 FKHMKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIEL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G       
Sbjct: 247 EPALSFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348
                 K  +     PI+G+I MD  M  +   + +  G  + I   +      +   A 
Sbjct: 301 ------KVKVGDEYCPIVGRICMDQFMVKMPKKMPV--GTKVVIISNNPSDPNNIKAAAD 352

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T +Y++   +  R  + Y
Sbjct: 353 YVDTIHYEVACLLNDRLPRVY 373


>gi|293398716|ref|ZP_06642892.1| alanine racemase [Neisseria gonorrhoeae F62]
 gi|291610856|gb|EFF39955.1| alanine racemase [Neisseria gonorrhoeae F62]
          Length = 375

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 164/363 (45%), Gaps = 20/363 (5%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
            NEF+R   ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     
Sbjct: 20  RNEFMRPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADG 77

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSC 118
           F V +++EG++LR       I +L G+    E    +  +L P + +  QL         
Sbjct: 78  FAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHW 136

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L++D+G +R G    +           +     +  SH +CAD+P S +  +Q
Sbjct: 137 KKPVKVWLKMDSGMHRTGFFPHDYTSAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQ 196

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           +E F       +G E SLA+S+ IL  P       R G++LYG +        ++ V+  
Sbjct: 197 MEAFDLGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRL 255

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             RI   R       + YG     ++ + + + A GYADGYP                  
Sbjct: 256 STRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNS 304

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+
Sbjct: 305 PVAVDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELM 363

Query: 359 VRI 361
             I
Sbjct: 364 CNI 366


>gi|51104395|gb|AAT96856.1| DadX [Rhizobium etli]
          Length = 377

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 192/366 (52%), Gaps = 15/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+ G + FFV    E 
Sbjct: 23  LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           V+LR      A+IFVL G+ PG E    ++ +IPV++S+ Q   +S        S P  L
Sbjct: 83  VRLRPALAEDAQIFVLNGLQPGNEVACAESGIIPVLNSLAQWRQWSATARLLTRSLPAVL 142

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLG   +E  +      +    ++  I+SHLACAD+  S  N  QL     + 
Sbjct: 143 QFDTGMSRLGFPWEERAELAAVIGDGANVEILFIMSHLACADELDSGQNGDQLAEMARIA 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             + G + S A+S G+ LG  YH  L RPGI+LYGG      ++PM+ VV  +  ++  R
Sbjct: 203 DEFPGFDISFANSGGLFLGDAYHGVLARPGIALYGGAPNAGGTNPMEPVVRLDVAVVQTR 262

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              +G  + YGG     R++ +A  A GYADG P +L              G  + KG  
Sbjct: 263 TVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDC-----------GAVYHKGIR 311

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+++MD    DIT       E     ++ GP+  L+DVA A+GT +Y++L  +G R
Sbjct: 312 LPIVGRVSMDSATVDITALPEGGAEAWKPCRMLGPNQTLEDVAGAAGTISYEILTGLGDR 371

Query: 365 YAKFYT 370
           Y + Y 
Sbjct: 372 YDRQYC 377


>gi|78062814|ref|YP_372722.1| alanine racemase [Burkholderia sp. 383]
 gi|77970699|gb|ABB12078.1| Alanine racemase [Burkholderia sp. 383]
          Length = 373

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 153/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +   +  +R   VVK +AYG G E+I P L  A      +  
Sbjct: 3   RPIVAHIRPDAVRHNLDFIRRTAAQSRVWGVVKADAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P   ++     L   +    QL              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQLDLLIAARPQ-QPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            + +        ++ H A A          QL++F 
Sbjct: 120 IQLKMNSGMNRLGYRPAAFRAAWERAASAPSIGKITLMMHFANA---DEGEVDWQLDQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
              +   G E S ++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 ATTAGIPG-ERSTSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARDIADTPLMAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++     E V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLSPEETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|53719788|ref|YP_108774.1| alanine racemase [Burkholderia pseudomallei K96243]
 gi|53723911|ref|YP_103215.1| alanine racemase [Burkholderia mallei ATCC 23344]
 gi|67639484|ref|ZP_00438337.1| alanine racemase [Burkholderia mallei GB8 horse 4]
 gi|76809305|ref|YP_333995.1| alanine racemase [Burkholderia pseudomallei 1710b]
 gi|121600921|ref|YP_993394.1| alanine racemase [Burkholderia mallei SAVP1]
 gi|124383506|ref|YP_001029170.1| alanine racemase [Burkholderia mallei NCTC 10229]
 gi|126441754|ref|YP_001059490.1| alanine racemase [Burkholderia pseudomallei 668]
 gi|126450850|ref|YP_001080901.1| alanine racemase [Burkholderia mallei NCTC 10247]
 gi|126454140|ref|YP_001066773.1| alanine racemase [Burkholderia pseudomallei 1106a]
 gi|134277700|ref|ZP_01764415.1| alanine racemase [Burkholderia pseudomallei 305]
 gi|166999682|ref|ZP_02265517.1| alanine racemase [Burkholderia mallei PRL-20]
 gi|167720193|ref|ZP_02403429.1| alanine racemase [Burkholderia pseudomallei DM98]
 gi|167739195|ref|ZP_02411969.1| alanine racemase [Burkholderia pseudomallei 14]
 gi|167816406|ref|ZP_02448086.1| alanine racemase [Burkholderia pseudomallei 91]
 gi|167846316|ref|ZP_02471824.1| alanine racemase [Burkholderia pseudomallei B7210]
 gi|167894898|ref|ZP_02482300.1| alanine racemase [Burkholderia pseudomallei 7894]
 gi|167903285|ref|ZP_02490490.1| alanine racemase [Burkholderia pseudomallei NCTC 13177]
 gi|167911526|ref|ZP_02498617.1| alanine racemase [Burkholderia pseudomallei 112]
 gi|167919536|ref|ZP_02506627.1| alanine racemase [Burkholderia pseudomallei BCC215]
 gi|217421882|ref|ZP_03453386.1| alanine racemase [Burkholderia pseudomallei 576]
 gi|237812829|ref|YP_002897280.1| alanine racemase [Burkholderia pseudomallei MSHR346]
 gi|242314484|ref|ZP_04813500.1| alanine racemase [Burkholderia pseudomallei 1106b]
 gi|254177500|ref|ZP_04884155.1| alanine racemase [Burkholderia mallei ATCC 10399]
 gi|254179300|ref|ZP_04885899.1| alanine racemase [Burkholderia pseudomallei 1655]
 gi|254189313|ref|ZP_04895824.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237]
 gi|254197584|ref|ZP_04904006.1| alanine racemase [Burkholderia pseudomallei S13]
 gi|254200168|ref|ZP_04906534.1| alanine racemase [Burkholderia mallei FMH]
 gi|254206506|ref|ZP_04912858.1| alanine racemase [Burkholderia mallei JHU]
 gi|254261307|ref|ZP_04952361.1| alanine racemase [Burkholderia pseudomallei 1710a]
 gi|254297188|ref|ZP_04964641.1| alanine racemase [Burkholderia pseudomallei 406e]
 gi|254358084|ref|ZP_04974357.1| alanine racemase [Burkholderia mallei 2002721280]
 gi|81823990|sp|Q62JA4|ALR_BURMA RecName: Full=Alanine racemase
 gi|166919548|sp|A3MKW5|ALR_BURM7 RecName: Full=Alanine racemase
 gi|166919549|sp|A2SB51|ALR_BURM9 RecName: Full=Alanine racemase
 gi|166919550|sp|A1V591|ALR_BURMS RecName: Full=Alanine racemase
 gi|52210202|emb|CAH36181.1| alanine racemase, catabolic [Burkholderia pseudomallei K96243]
 gi|52427334|gb|AAU47927.1| alanine racemase [Burkholderia mallei ATCC 23344]
 gi|76578758|gb|ABA48233.1| alanine racemase [Burkholderia pseudomallei 1710b]
 gi|121229731|gb|ABM52249.1| alanine racemase [Burkholderia mallei SAVP1]
 gi|124291526|gb|ABN00795.1| alanine racemase [Burkholderia mallei NCTC 10229]
 gi|126221247|gb|ABN84753.1| alanine racemase [Burkholderia pseudomallei 668]
 gi|126227782|gb|ABN91322.1| alanine racemase [Burkholderia pseudomallei 1106a]
 gi|126243720|gb|ABO06813.1| alanine racemase [Burkholderia mallei NCTC 10247]
 gi|134251350|gb|EBA51429.1| alanine racemase [Burkholderia pseudomallei 305]
 gi|147749764|gb|EDK56838.1| alanine racemase [Burkholderia mallei FMH]
 gi|147753949|gb|EDK61014.1| alanine racemase [Burkholderia mallei JHU]
 gi|148027211|gb|EDK85232.1| alanine racemase [Burkholderia mallei 2002721280]
 gi|157807101|gb|EDO84271.1| alanine racemase [Burkholderia pseudomallei 406e]
 gi|157936992|gb|EDO92662.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698539|gb|EDP88509.1| alanine racemase [Burkholderia mallei ATCC 10399]
 gi|169654325|gb|EDS87018.1| alanine racemase [Burkholderia pseudomallei S13]
 gi|184209840|gb|EDU06883.1| alanine racemase [Burkholderia pseudomallei 1655]
 gi|217395624|gb|EEC35642.1| alanine racemase [Burkholderia pseudomallei 576]
 gi|237506222|gb|ACQ98540.1| alanine racemase [Burkholderia pseudomallei MSHR346]
 gi|238520031|gb|EEP83495.1| alanine racemase [Burkholderia mallei GB8 horse 4]
 gi|242137723|gb|EES24125.1| alanine racemase [Burkholderia pseudomallei 1106b]
 gi|243064332|gb|EES46518.1| alanine racemase [Burkholderia mallei PRL-20]
 gi|254219996|gb|EET09380.1| alanine racemase [Burkholderia pseudomallei 1710a]
          Length = 356

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 150/367 (40%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +  ++  A+VK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLSVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + A        + Q+  F 
Sbjct: 120 VQLKMNSGMNRLGYTPEKYRAAWERARACPGIGQITLMTHFSDA--DGERGVAEQMATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
                  G   S A+S+ +L  P+ HF   RPGI LYG +            ++  +T  
Sbjct: 178 RGAQGIAGA-RSFANSAAVLWHPSAHFDWVRPGIMLYGASPSGRAADIADRGLKPTMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTLAKGQAVGYGSMFVAEDTMRIGVVACGYADGYPR-----------IAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA    T  Y+L+ 
Sbjct: 286 VVVDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|226952672|ref|ZP_03823136.1| alanine racemase 1 [Acinetobacter sp. ATCC 27244]
 gi|226836578|gb|EEH68961.1| alanine racemase 1 [Acinetobacter sp. ATCC 27244]
          Length = 356

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 172/364 (47%), Gaps = 23/364 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID TAL+ N + +  L+ N++  ++VK NAYG G +    AL  A    F V  +EE ++
Sbjct: 8   IDSTALQYNLNRVKQLAPNSKIVSMVKANAYGHGIKDCLTAL--AATDAFGVACLEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R       I ++ G+    E I + +  L  V+    Q+ +          +     ++
Sbjct: 66  IRRLGYLQPITLIEGVFSADEMIHVIEQKLECVVHHAQQVEWLLAHKDQYQALDLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG  + E          +    +  +  H A A D    +N  Q  +F  +  
Sbjct: 126 LNSGMNRLGFKVSEITTVIQRLKAEGFNCVLTM--HFANA-DTDHPLNEQQKMQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIIL 244
             + I AS  +S+ I   P  HF   RPGI LYG +   +K+     ++ V+T  A II 
Sbjct: 183 ACEPILASCCNSAAIYRYPELHFDFVRPGIMLYGASPFADKNVEALDLKPVMTFSAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           + +   GE V YG     T+D  IA+ +IGY DGYP                     I  
Sbjct: 243 LNQIQQGEYVGYGSTYVATQDMTIAIVSIGYGDGYPRA-----------YIKPNFVAIYD 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            ++P++G+++MDM   DI++ L+ ++G  ++++G    +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QLIPVIGRVSMDMIAIDISN-LNAKIGTKVELWGNTRLVDDVAEANGTIGYELLCRLSQR 350

Query: 365 YAKF 368
             + 
Sbjct: 351 PQRR 354


>gi|160947411|ref|ZP_02094578.1| hypothetical protein PEPMIC_01345 [Parvimonas micra ATCC 33270]
 gi|158446545|gb|EDP23540.1| hypothetical protein PEPMIC_01345 [Parvimonas micra ATCC 33270]
          Length = 393

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 109/384 (28%), Positives = 175/384 (45%), Gaps = 28/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+ N+ L + ++L  LKNN+  +      A+   V+K NAYGLG   +A  L   G   F
Sbjct: 1   MYENQSL-IFVNLDKLKNNFLKIKEKCNGAKVGIVLKANAYGLGACTVAEFLQKQGADYF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCG 119
            V +  E ++LR    +  I +L  +     + +   N+   + ++  +   +++   C 
Sbjct: 60  CVANFSEAMELRKKKIKLPILILGYVPNALFEKLIKNNVDLTVYNIEMIRELNEISAKCR 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 +++DTG NRLG  + + L D+    ++ K   +  + SHL  +D        +Q
Sbjct: 120 KKCKIHIKIDTGMNRLGFLIDDKLKDYLKEIYSMKHIIVKGMFSHLCVSDIDDFSFTKLQ 179

Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKS 229
           +ERF  +       + K     +A+  G LL   Y + + R GI +YG         N  
Sbjct: 180 VERFEKVKHILEEENLKIPMLHIANDGGALLHDYY-YDMVRVGIGIYGHYPSEYVKDNSK 238

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             M TVV+  + +  I+    G+ V YG      R   +A  +IGYADGYP  LS     
Sbjct: 239 MKMDTVVSFVSTVSNIKYIHKGDTVGYGRTFCADRTIKVATISIGYADGYPYELSN---- 294

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DIKLD--D 345
                   G   I      ILGK+ MD TM DI+D   +++GD   ++G   D+KLD  +
Sbjct: 295 -------KGYVMINNKKAKILGKVCMDQTMIDISDIDDVKIGDTALLYGEYKDMKLDIFE 347

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  + T  YDL+ RI  R  + Y
Sbjct: 348 IAKIANTNVYDLICRINMRIPRVY 371


>gi|314934146|ref|ZP_07841507.1| alanine racemase [Staphylococcus caprae C87]
 gi|313653051|gb|EFS16812.1| alanine racemase [Staphylococcus caprae C87]
          Length = 382

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 94/382 (24%), Positives = 162/382 (42%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L ++L A+ NN+   N L  N    +V+K N+YGLG  K+A  L   G   
Sbjct: 2   SEKFYRSTYLNVNLDAILNNYQIFNQLHHNKTVISVIKANSYGLGSVKVAHHLMEHGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL--MS 117
           F V +++E ++LR++   A+I VL  I            +   + S   L    +     
Sbjct: 62  FAVATLDEAIELRMHGIDAKILVLGVIPTKDISKAIQHRVALTVPSKAWLKEAIRNIPEK 121

Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                    ++D+G  RLG+  ++E  D       K       + +H A AD+P   +N 
Sbjct: 122 NEKKLWLHAKIDSGMGRLGMKDVEEYKDVVDIINKKDDLVFEGVFTHFASADEPGDSMNE 181

Query: 177 VQLERFRTLISHYKGIEASLA-SSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231
            Q E F+ +++  +      + +S+  LL         R GISLYG         N    
Sbjct: 182 -QYEFFKDIVNQVEKPNYIHSQNSAASLLMDGQFCNAIRLGISLYGYYPSQYVRDNVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++        I+ ++    GE VSYG      ++  IA+  +GYADGY   + G      
Sbjct: 241 LRPSAQLVTEIVQVKSLKVGETVSYGRTFTADKEMKIAILPVGYADGYLRAMQG------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                     + G+   ++G++ MD T+  + D   +++GD + +    I     ++ +A
Sbjct: 295 ------AYVNVNGHQCEVVGRVCMDQTIVSVPD--DVKMGDKVILMDNHIDSPQSVESLA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L  +  R  + Y
Sbjct: 347 EKQHTINYEVLCNLSKRLPRIY 368


>gi|309809615|ref|ZP_07703472.1| alanine racemase [Lactobacillus iners SPIN 2503V10-D]
 gi|312871527|ref|ZP_07731620.1| alanine racemase [Lactobacillus iners LEAF 3008A-a]
 gi|308170096|gb|EFO72132.1| alanine racemase [Lactobacillus iners SPIN 2503V10-D]
 gi|311092922|gb|EFQ51273.1| alanine racemase [Lactobacillus iners LEAF 3008A-a]
          Length = 375

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 152/381 (39%), Gaps = 30/381 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V
Sbjct: 6   HRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E ++LR    +  I VL    P    +  + ++   +  +  L   S  +S G   
Sbjct: 66  AILDEAIELRKAGIKVPILVLGITLPKFALLAAENDISLTVGDLDWLKQASTFLS-GTKL 124

Query: 123 PYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +D+G  R+G +  +A L             +  + +H + AD         Q+++
Sbjct: 125 KIHLAIDSGMGRIGFNEDDAFLKANDYLLAHPEYDVEGMFTHFSTADCHDLEYFDSQVKK 184

Query: 182 FRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KINKSHPM 232
           F         K       +S+  +     +  L R GI++YG          +I     +
Sbjct: 185 FDHFKKMLRIKPKYIHCDNSAASIFNRQVNSDLVRYGIAMYGLNPSSAPHGIEIQPKFTL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G       
Sbjct: 245 QPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF------ 298

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VAL 348
                 K  +     PI+G++ MD  M  + + + +  G  +++   D K  +    VA 
Sbjct: 299 ------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNIKAVAD 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            + T +Y++   +  R  + Y
Sbjct: 351 YANTIHYEIACLLSDRVPREY 371


>gi|157370985|ref|YP_001478974.1| alanine racemase [Serratia proteamaculans 568]
 gi|157322749|gb|ABV41846.1| alanine racemase [Serratia proteamaculans 568]
          Length = 357

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 157/369 (42%), Gaps = 26/369 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   + L A +NN   +   +  A+  +VVK NAYG G + +  +L  A    F +  
Sbjct: 3   RPISATLHLGAFENNLQVVRRFAPKAKVWSVVKANAYGHGIKHVWRSL--AQTDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    Q  I +L G    Q+  + D   L   + S  QL   ++         
Sbjct: 61  LAEAILLRESGWQGPILLLEGFFKPQDLALLDRYRLTTSVHSDWQLAAIAEA-KLSAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG + +        +          ++SH A AD P          +  
Sbjct: 120 VYLKVNSGMNRLGFAPERLHAVWMKAQEIGNIASLTLMSHFATADGPQGVE-----AQMA 174

Query: 184 TLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
           ++    KGI     LA+S+  L  P  H    RPGI LYG +            +Q  +T
Sbjct: 175 SIERAAKGITLPRCLANSAATLWHPQTHGSWVRPGIVLYGASPSGQWRDIADSGLQPTMT 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II ++   +G+ V YG + +      I V A GYADGYP                G
Sbjct: 235 LSSEIIGVQTLKSGDQVGYGWRYRAEGAQRIGVVACGYADGYPRHAQ-----------TG 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              ++ G +   LG ++MDM + D+T      +G  ++++G  + +DDVA A+GT  Y+L
Sbjct: 284 TPVWVDGVLTRTLGTVSMDMLVVDLTPCPHAGIGAEVELWGRRLPVDDVATAAGTLGYEL 343

Query: 358 LVRIGTRYA 366
           L  +  R  
Sbjct: 344 LTALAARVP 352


>gi|206563057|ref|YP_002233820.1| alanine racemase [Burkholderia cenocepacia J2315]
 gi|198039097|emb|CAR55060.1| alanine racemase, catabolic [Burkholderia cenocepacia J2315]
          Length = 373

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 154/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +      +R  AVVK NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHIRPDAVRHNLDFIRRTVAPSRVWAVVKANAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L G+  P   ++     L   +    QL              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGVFEPADVELADRYRLTVAVHCDEQLDLLIAAKPR-QPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            + +        ++ H A A          QLE+F 
Sbjct: 120 IQLKMNSGMNRLGYRPAAFRAAWERAASAPSIGKITLMMHFANA---DEGEVDWQLEQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
              +   G E S+++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 ATTAGIPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLVAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++     E V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAPEETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|254442146|ref|ZP_05055622.1| alanine racemase [Verrucomicrobiae bacterium DG1235]
 gi|198256454|gb|EDY80762.1| alanine racemase [Verrucomicrobiae bacterium DG1235]
          Length = 385

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 107/382 (28%), Positives = 174/382 (45%), Gaps = 29/382 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +IDL AL+ N +++  AL    R  AVVK +AYG G  +    L  AG+  + V 
Sbjct: 9   RRCWAEIDLAALERNLNAIKNALPPRIRYIAVVKADAYGHGMHQTVARLMQAGIDMYGVA 68

Query: 64  SVEEGVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VS 121
           +V E   +R        I +L      + + +F+ +LIP +SSV ++ F   L      +
Sbjct: 69  NVAEAATIREIGGSGWSILILGATLREEAQFLFEYDLIPTLSSVEEVRFLDDLAEKRDAN 128

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++VDTG  RLG+  ++A +        K  +L  I +H + A +        Q  R
Sbjct: 129 LRVHIKVDTGMGRLGIWHEDADELFEAMRTAKRLKLDGIYTHFSHA-ETDVEFTERQRRR 187

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPN-YHFQLTRPGISLYGGTD---KINKSHPM 232
           F T I+    I          +S+G+        +   R G+  +G T     +    P 
Sbjct: 188 FMTAITRVNWINPAELLIHADNSAGLTSFSRESAYNAVRIGLLQFGITPYAQSLFAKVPT 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             + + + RI L+++  AG  VSYG   +L R+S +A+   GY DG P +LS        
Sbjct: 248 NPIFSFKTRISLVKRLPAGTEVSYGRTCRLKRESRVAILCAGYGDGIPRSLSN------- 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIF----GPDIKLDDVA 347
                G   I+G   P LG++TMD T+ D+TD  +S + GD   +     G +IK++  A
Sbjct: 301 ----KGFALIQGKRCPYLGRVTMDQTIIDVTDLEVSPQAGDEACLIGFQDGGEIKVEQFA 356

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             +GT ++++L  I  R  + Y
Sbjct: 357 RWAGTISWEILCSITKRVPRIY 378


>gi|260424611|ref|ZP_05732650.2| alanine racemase [Dialister invisus DSM 15470]
 gi|260402530|gb|EEW96077.1| alanine racemase [Dialister invisus DSM 15470]
          Length = 361

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 101/371 (27%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++IDL A ++N   + +   N    AV+K NAYG G  +   A    G     V  VEEG
Sbjct: 1   MEIDLRAFRHNLRVIRSHLKNVPALAVIKANAYGHGAVECLRAALEEGCVGAAVARVEEG 60

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127
             +R       ++VL    P +  +  +  LI  +     L        +        L 
Sbjct: 61  RVVRASGFDCPVYVLGLPLPEEMSVGVNEELILPVDDTTNLEALEIAASTLKKMVEVMLP 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NR+G   ++   F           +  + +HLA AD  +      QL  F   +S
Sbjct: 121 IDTGMNRIGTHAKDLSAFLEKLKRYPHLHIHGLFTHLATADAKNKSKTYKQLAEFEEALS 180

Query: 188 HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVVTAEARI 242
               +E    S ASS+G++  P   + L RPGI  YG +      +   ++ ++T  + I
Sbjct: 181 AMPSLENLVISAASSAGVVDIPESWYNLVRPGIIQYGPSPSNTMLNYLDLKYMMTVVSHI 240

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             ++    GE V YG      +D  IA   IGYADGYP  LS             G   I
Sbjct: 241 THVQVVHKGETVGYGATYTAGKDMRIATIPIGYADGYPRALSN-----------KGAVLI 289

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358
                PI+G+I MD  M  + D+  +  GD + + G     +IK+D++A  +GT +Y++L
Sbjct: 290 GEKRCPIVGRICMDQLMAAVDDT--VMPGDEVVLIGKQGDEEIKVDELAELAGTIHYEIL 347

Query: 359 VRIGTRYAKFY 369
             +  R  + +
Sbjct: 348 CGL-RRIPRIF 357


>gi|242278092|ref|YP_002990221.1| alanine racemase [Desulfovibrio salexigens DSM 2638]
 gi|242120986|gb|ACS78682.1| alanine racemase [Desulfovibrio salexigens DSM 2638]
          Length = 374

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 107/379 (28%), Positives = 169/379 (44%), Gaps = 30/379 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L +++DL A+++N+  +      +R   VVK +AYG G  ++A AL   G   F V +V 
Sbjct: 8   LEVEVDLNAIRHNYRLLRD--KGSRVYGVVKADAYGHGLIEVARALEEEGADTFAVGTVG 65

Query: 67  EGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
           EG++LR      RI  +L  ++           +IP I    QL   S ++S  G     
Sbjct: 66  EGMQLRKSGCSKRIISLLGPLNEEDCFNAAQNKIIPFIGEFEQLEMLSAVVSAQGRKVEI 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFR 183
           +L+ DTG +RLG S+ E                 L  SHLA +DDP+     S Q E F 
Sbjct: 126 SLKFDTGMSRLGFSVNELDKLIEWLKINPQICPVLASSHLATSDDPAYEGYMSAQAETFS 185

Query: 184 TLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-----PMQT 234
            ++         +EASLA+S+GIL+    H+   R GI+LYG    +          ++ 
Sbjct: 186 GILKRLADAGYELEASLANSAGILVHDQVHYSAQRGGIALYGSNPLLGTEWSESGRDLKP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +     I  +R+   G+ +SYG      RD  +A+   GYADGY   LS          
Sbjct: 246 AMQVRTNIAAVRELKKGQAISYGCTYTADRDMTVAIVCAGYADGYSRGLSST-------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G+  I G    ILG++ M + + D++    ++ GD   + G +    I  +D+A   
Sbjct: 298 ---GEVCIHGKRAKILGRVCMQLCIVDVSHIEGVKFGDTAYLLGGEGEGHISAEDLAGWW 354

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++   +G    + Y
Sbjct: 355 QTITYEIFCLLGM-NPRTY 372


>gi|240126095|ref|ZP_04738981.1| Alr [Neisseria gonorrhoeae SK-92-679]
 gi|268684684|ref|ZP_06151546.1| alanine racemase [Neisseria gonorrhoeae SK-92-679]
 gi|268624968|gb|EEZ57368.1| alanine racemase [Neisseria gonorrhoeae SK-92-679]
          Length = 352

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 91/358 (25%), Positives = 161/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESSMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +   +    ++ V+    RI 
Sbjct: 179 LGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGDSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
 gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
          Length = 826

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 153/371 (41%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + L    +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 467 LEVNLNAVVDNLNWYRSFLKPETKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 526

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD +L P + S   +    K          P  
Sbjct: 527 GVTLRKNGITSNIMIMNPEMTS-FKTLFDYDLEPEVYSFRLMDALVKAAQKEGITGFPVH 585

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG   Q +  +       +       + SH   +D  +    ++ Q   F 
Sbjct: 586 IKLDTGMHRLGFDPQKDMDELIKRLKKQNAIIPRSVFSHFVGSDADNFDEFSAHQFALFD 645

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +SSGI   P     + R G+ LYG   + NK+     + T 
Sbjct: 646 EGSKKLQAAFSHKIIRHMDNSSGIEHFPERQMDMCRLGLGLYGINPRTNKTINN--ISTL 703

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R   AG+ V Y  +  +  DS+IA   IGYADG    L               
Sbjct: 704 KTTILQLRNVPAGDTVGYSRKGTIDHDSVIAAIPIGYADGLNRHLGNRHC---------- 753

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 754 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDTLDTIPYEVL 812

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 813 TTISNRVKRVY 823


>gi|87124994|ref|ZP_01080841.1| putative Alanine racemase [Synechococcus sp. RS9917]
 gi|86167314|gb|EAQ68574.1| putative Alanine racemase [Synechococcus sp. RS9917]
          Length = 390

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 169/379 (44%), Gaps = 26/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   L++   A+ +N  S+ +L        AVVK + YG G   +A A    G     V
Sbjct: 20  RQRAWLEVAPAAISHNARSIRSLLRPGCALMAVVKADGYGHGAVTVARAALAGGATQLGV 79

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120
            +++EG++LR    +  + V+  +    + +      L+P +S + +      L    G 
Sbjct: 80  ATLQEGIELRQAGLREPVLVMGNLTQADDLRRCLHWQLMPTLSGMREALLCQNLASDSGR 139

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSH---VNS 176
                L++DTG  RLG   QEA             +L  I SHLA AD DP+     V  
Sbjct: 140 RFDVQLKLDTGMTRLGCDWQEAPRLVDAIQQLDRIRLEGIYSHLALADGDPNGDGERVTQ 199

Query: 177 VQLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-- 232
            Q +RFR  +      +A   LA+S+G L  P  H  L R G++LYG +   +  H +  
Sbjct: 200 QQHQRFREALRLLPEGDAVHHLANSAGTLRDPELHHDLVRVGLALYGHSPSPHLDHAVAL 259

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T  AR+ LIR+  AG  VSYG +    R S +AV AIGYADG    LSG       
Sbjct: 260 EPAMTVRARVSLIRQVGAGVGVSYGHRFITARPSRLAVVAIGYADGVSRALSGRIC---- 315

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                     +G  +P +G ITMD  + D+TD  ++E G  + + G D    I   D + 
Sbjct: 316 -------ALHQGRRLPQVGAITMDQLILDVTDHPNLEPGAVVTLLGRDGDLTIHPRDWSD 368

Query: 349 ASGTTNYDLLVRIGTRYAK 367
              +  +++L     R  +
Sbjct: 369 QCDSIPWEVLCGFKHRLPR 387


>gi|327461776|gb|EGF08107.1| alanine racemase [Streptococcus sanguinis SK1]
          Length = 369

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 144/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALDAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGTVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRLSMDQITVRLPQAYPL--GTLVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|19076018|ref|NP_588518.1| alanine racemase Alr1 [Schizosaccharomyces pombe 972h-]
 gi|12229634|sp|O59828|ALR1_SCHPO RecName: Full=Alanine racemase, catabolic
 gi|3136037|emb|CAA19068.1| alanine racemase Alr1 [Schizosaccharomyces pombe]
          Length = 375

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 103/380 (27%), Positives = 174/380 (45%), Gaps = 33/380 (8%)

Query: 11  IDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYNA--GVQDFFVTS 64
           IDL A+ +N++    +    + +    A+VK NAYG G  ++A  L      +  F V+S
Sbjct: 8   IDLHAIAHNYNVAKQMMLQKNPSGHVLAIVKANAYGHGAVQVARFLLKHCSSIDGFGVSS 67

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           +EE ++LR      +I +L G    ++++  I D N   +I S  Q+  + K        
Sbjct: 68  IEEALELRHGGIYNKIVLLEGFFTEEDELKLIDDYNFSIIIHSEDQVNSFIKY-PFNRPV 126

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLER 181
              L++D+G NRLG +  + + F +   N K       I+H A AD   +      Q + 
Sbjct: 127 EIWLKLDSGMNRLGFTPSQFMKFYNLLSNNKNVSNIGKITHFAFADMLENPEHTLKQWDI 186

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTD--------KINKSHPM 232
           F   ++H  G   S   S+ IL   N       R GI LYG +         K  +S  +
Sbjct: 187 FEKSVAHLPG-PLSAGGSAIILGWLNTVCTDWLRAGIMLYGISPFLSKNKDSKTPESVNI 245

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +   + II ++    G+ + YGG+   TRD  + V A+GY DG+P            
Sbjct: 246 KPAMKLVSTIISVKHVDKGQPIGYGGRYVATRDMKLGVVAMGYGDGFPRQ---------- 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALAS- 350
            V  G    + G   PI+G+++MDM   D++D   ++ GD +  +G P++ + D+A    
Sbjct: 296 -VKDGCPVLVNGVKAPIVGRVSMDMLTVDLSDIPDVKPGDEVIFWGTPELTVADIAKYCS 354

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
            T+ Y+L+ ++  R    YT
Sbjct: 355 DTSPYELVTKLTRRVPLQYT 374


>gi|254524402|ref|ZP_05136457.1| alanine racemase [Stenotrophomonas sp. SKA14]
 gi|219721993|gb|EED40518.1| alanine racemase [Stenotrophomonas sp. SKA14]
          Length = 356

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 164/369 (44%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L G  +  A++K +AYG G  + A AL       F V +
Sbjct: 2   RPARALIDLGALRSNYRLARELGGG-KALAIIKADAYGHGAVRCAQAL-EGEADGFGVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L GI  P    ++ + +    + S  QL   +          
Sbjct: 60  IEEALELRQSGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSSWQLEALAAF-DSPRPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGL +                +  ++++HLA AD+  S     Q   F 
Sbjct: 119 VWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFA 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             I    G E S+ +S  +L  P+      RPG+ LYG     + +     ++ V+T ++
Sbjct: 179 RAIDGLSG-ETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDNTALTERLRPVMTMQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I  R   AGE V YG +      + + V A+GYADGYP                G   
Sbjct: 238 KVIAERWIEAGEPVGYGARFVAKSRTRVGVVALGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    ++G+++MDM   D+T      +G  ++++G    L ++A   G + Y L   
Sbjct: 287 LIDGQPGGLIGRVSMDMLTVDLTAHPQAGIGSVVELWGTAPTLSELAPRCGVSAYQLPCA 346

Query: 361 IGTRYAKFY 369
           +  R A+ Y
Sbjct: 347 V-KRVARVY 354


>gi|291542822|emb|CBL15932.1| alanine racemase [Ruminococcus bromii L2-63]
          Length = 710

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 178/382 (46%), Gaps = 31/382 (8%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           +  +   ++IDL  L++N  ++   +       AVVK  AYG G  +I+  L   GV+ F
Sbjct: 338 NDTDRAYIEIDLNNLEHNVKTLRKAMPPKCELMAVVKAQAYGHGAYEISTHLEKIGVRAF 397

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V +++EG+ LR Y  +  I +L      +   +   NLI  + S     + + L   GV
Sbjct: 398 AVATIDEGISLRKYGIRGEILILGYTSIDRASELKKYNLIQTLISFE---YANALNRQGV 454

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSV 177
                +++DTG +RLG+   + LD     F  K   +  I +HL C+D            
Sbjct: 455 MVNAHIKIDTGMHRLGIPSADFLD-VEKVFTMKNLNVCGIFTHLCCSDSSMPDDIAFTRG 513

Query: 178 QLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-- 230
           Q++ F  LI H K  GI      + SS G L  P       R G++LYG     + +   
Sbjct: 514 QIDGFYNLIDHLKKTGINIPKLHIQSSYGFLNYPELKCSYVRTGVALYGVKSLPDDNTEL 573

Query: 231 --PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ V++ ++R++LIR+   G+ V YG      R+S IA+  IGY DG+P +LS    
Sbjct: 574 LLDLRPVLSLKSRVVLIRQIEKGDSVGYGRSFVAERNSRIAILPIGYGDGFPRSLSN--- 630

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344
                    G+  I  Y+VP++G+I MD    DITD+  I  GD   +       D+  D
Sbjct: 631 -------GNGRALIGQYIVPVIGRICMDQLAIDITDAEGIAAGDIATLIDTDGCTDLSAD 683

Query: 345 DVALASGTTNYDLLVRIGTRYA 366
            VA  S + + +LL R+G R  
Sbjct: 684 VVAKNSNSISNELLCRMGERLP 705


>gi|254383132|ref|ZP_04998486.1| alanine racemase [Streptomyces sp. Mg1]
 gi|194342031|gb|EDX22997.1| alanine racemase [Streptomyces sp. Mg1]
          Length = 382

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 168/385 (43%), Gaps = 28/385 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   +  +IDL A++ N  ++   +  A+  AVVK + YG G    A A  +AG     
Sbjct: 6   ETATRVYAEIDLDAVRGNVRALRERAPRAQVMAVVKADGYGHGAVPCARAALDAGAAWIG 65

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGV 120
             + +E + LR     A +        G  +   +  +   +S++       +   + G 
Sbjct: 66  TATPQEALALRAAGIDAPLMCWLWTPGGPWREAVEAGIDVSVSALWALDEVRAAARAAGR 125

Query: 121 SHPYALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           +    L+ DTG  R G    +  +       +  +   +++ + SH ACAD+P      +
Sbjct: 126 TARIQLKADTGLGRAGCQPADWAELVGAAVAAQAEGTVRVTGLWSHFACADEPGHPSVPL 185

Query: 178 QLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           QL  FR ++++   +G+E     +A+S   L  P  HF L R G+++YG +       P 
Sbjct: 186 QLAAFRDMLAYAEKEGVEPEVRHIANSPATLTLPESHFDLVRCGLAVYGVSPAPELGTPA 245

Query: 233 Q----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           Q      +T +A + L++   AG  VSYG       D+ +A+   GYADG P   SG   
Sbjct: 246 QLGLRPAMTLKASVALVKAVPAGHGVSYGHHHVTAADTRLALIPAGYADGVPRHASGR-- 303

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344
                    G   + G +  + G++ MD  + D+     +E GD   +FGP    +   +
Sbjct: 304 ---------GPVLVGGKVRTVAGRVAMDQFVVDLGPDDLVEAGDEAVLFGPGDGGEPTAE 354

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           D A A+ T  Y+++ RIG R  + Y
Sbjct: 355 DWAQAADTIAYEIVTRIGGRVPRVY 379


>gi|116511664|ref|YP_808880.1| alanine racemase [Lactococcus lactis subsp. cremoris SK11]
 gi|123125695|sp|Q030B4|ALR_LACLS RecName: Full=Alanine racemase
 gi|116107318|gb|ABJ72458.1| alanine racemase [Lactococcus lactis subsp. cremoris SK11]
          Length = 367

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 154/381 (40%), Gaps = 27/381 (7%)

Query: 1   MHS--NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M +  +      +DL A++NN          NA     VK +AYG G  +++ A+ +  V
Sbjct: 1   MKTSPHRNTSAIVDLKAIRNNIEKFKKHINPNAEIWPAVKADAYGHGSVEVSKAVSDL-V 59

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V++++E ++LR +     I VL GI P    I    N+     S+  L    +  +
Sbjct: 60  GGFCVSNLDEAIELRNHLVTKPILVLSGIVPEDVDIAAALNISLTAPSLEWLKLVVQEEA 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                   + VD+G  R+G+   E  +      +K       I +H A AD         
Sbjct: 120 ELSDLKIHIGVDSGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADETKFKN 179

Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
           Q  RF  +++            +++  L        + R GIS+YG       +     +
Sbjct: 180 QQARFNKIMAGLSRQPKFIHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEI 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  + +  I+K  AGE V YG   + + ++ I    IGYADG+   + G       
Sbjct: 240 EPALSLVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 K  + G    I+G++ MD  M  +  S  +  G  + + G D    I   DVA 
Sbjct: 294 ------KVLVDGKFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKANEITTTDVAD 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY++L  +  R  + Y
Sbjct: 346 WRGTINYEVLCLLSDRIKRIY 366


>gi|282852968|ref|ZP_06262305.1| alanine racemase [Propionibacterium acnes J139]
 gi|282582421|gb|EFB87801.1| alanine racemase [Propionibacterium acnes J139]
          Length = 375

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     GV+    +
Sbjct: 70  GQELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLCPERLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLVETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGY 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  + + 
Sbjct: 359 EITCAISKRVNRCWV 373


>gi|170697807|ref|ZP_02888893.1| alanine racemase [Burkholderia ambifaria IOP40-10]
 gi|170137309|gb|EDT05551.1| alanine racemase [Burkholderia ambifaria IOP40-10]
          Length = 373

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 152/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   +   A+++N   +   +  +R  AVVK NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHVRPDAVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P   ++     L   +    Q               
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQFDLLIAAKPR-QPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          QL++F 
Sbjct: 120 IQLKMNSGMNRLGYRPHAFRAAWERAAAAPSIGKITLMMHFANA---DEGEVDWQLDQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
              +   G E S ++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 AATAGIPG-ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++     E V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYPRQA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|332639567|pdb|3MUB|A Chain A, The Crystal Structure Of Alanine Racemase From
           Streptococcus Pneumoniae
 gi|332639568|pdb|3MUB|B Chain B, The Crystal Structure Of Alanine Racemase From
           Streptococcus Pneumoniae
          Length = 367

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 152/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I L A++ N   M A         AVV  NAYG G   +A A+ +  V  F V
Sbjct: 6   HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVXANAYGHGAVAVAKAIQD-DVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L         +  + +    ++ +  +             
Sbjct: 65  SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L +D+G  R+G      ++   +   +    +  I +H A AD+ S    + QLERF
Sbjct: 125 TVHLXIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
           +T+++  K +      ++S+  L      F   R G ++YG       ++  + +   +T
Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ ++   AG  + YG   +   + +IA   IGYADG+   +              
Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G     +I    VA    T 
Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCLLSDRIPREY 366


>gi|292559088|gb|ADE32089.1| Alanine racemase [Streptococcus suis GZ1]
          Length = 367

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 153/379 (40%), Gaps = 29/379 (7%)

Query: 3   SNEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   +++++L A+  N+   M  L       AVVK NAYG G   +A  L +     F 
Sbjct: 5   EHRPTQIRVNLDAIAENFEQVMTNLPPKTEAFAVVKANAYGHGAVAVAKKLSSQ-AAGFC 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V++++E ++LR    +  I +L  +      +    N+   ++S+  L     L +    
Sbjct: 64  VSNLDEALELRKAGIEHPILILGVVPVRFLPVAHQLNISVTVASLDWLQDAKGLEADLSG 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ--LSLIISHLACADDPSSHVNSVQL 179
               L++DTG  R+G    +  D        +  +  +  + +H A AD+        QL
Sbjct: 124 LTVHLKLDTGMGRIGFR--KIADLLQAIAILEELEYDIEGVYTHFATADEVDQAHFESQL 181

Query: 180 ERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQT 234
             F+  +            ++S+  +   +  F L R G  LYG       +     +Q 
Sbjct: 182 SVFKEFLDVLPITPRWIHASNSATSIWHADTVFNLVRLGNILYGLNPSGRVLELPFDVQP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  + I+ +++  AG  + YG     T    IA   IGYADG   +L GL        
Sbjct: 242 ALSLVSEIVHVKQVEAGTTIGYGATYHSTDSEWIATVPIGYADGLVRSLQGLS------- 294

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G+I+MD     +  +  +  G  + + G D    I + + A   
Sbjct: 295 -----VLVDGQACEIVGRISMDQITIRLPHAYPL--GQKVTLIGQDGDKTISVQEWADRI 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++  +  R  + +
Sbjct: 348 GTINYEVVCLLTDRLPRIF 366


>gi|312880319|ref|ZP_07740119.1| alanine racemase [Aminomonas paucivorans DSM 12260]
 gi|310783610|gb|EFQ24008.1| alanine racemase [Aminomonas paucivorans DSM 12260]
          Length = 372

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 91/378 (24%), Positives = 152/378 (40%), Gaps = 24/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R+++ L  ++ N+ S+ +  G  A+   VVK NAYG G   +A AL  AG   F V 
Sbjct: 3   RPTRMEVHLGRIQENYRSIRSHVGARAQVMGVVKANAYGTGMVPVASALREAGCTRFAVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
           + EE ++LR       I V+          +   ++   ++ +      S+     G   
Sbjct: 63  TPEEALELRRCGIGDPILVMGASSADAAGELVAQDVAATVADLSFAQVLSREATRQGRPA 122

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + L+VDTG  R+G   QE                  + +H A AD+        Q  RF
Sbjct: 123 RFHLKVDTGMGRIGFLPQELPSLLPELLALGNLDFEGVFTHFATADEERLDYTWTQFRRF 182

Query: 183 RTLISHYK----GIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTV 235
             ++   +    G+      +S+ ++  P  H    RPG+ LYG         P      
Sbjct: 183 GDVLEELRDRGVGVRLRHACNSAALMRCPEMHLDAVRPGVILYGLRPSPGCPVPFPLSPA 242

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
              +  +  +R+   G  VSYG +        +AV  +GY DGY   L+G          
Sbjct: 243 FEVKTSVAALRELPPGSGVSYGLRYVTRGRERLAVLPLGYRDGYVRALAG---------- 292

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              +  I G+ VP++G I MD  + D+T    + VGD + + G      I+ +++A   G
Sbjct: 293 -KAEVLILGHRVPVVGTICMDQCLVDVTSLPEVCVGDEVVLLGRQGDRSIEAEEMARWLG 351

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y++      R  + +
Sbjct: 352 TIVYEIPGLFSERVPRVH 369


>gi|259500992|ref|ZP_05743894.1| alanine racemase [Lactobacillus iners DSM 13335]
 gi|302190559|ref|ZP_07266813.1| alanine racemase [Lactobacillus iners AB-1]
 gi|259167686|gb|EEW52181.1| alanine racemase [Lactobacillus iners DSM 13335]
          Length = 375

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 152/381 (39%), Gaps = 30/381 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V
Sbjct: 6   HRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E ++LR    +  I VL    P    +  + ++   +  +  L   S  +S G   
Sbjct: 66  AILDEAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKQTSTFLS-GTKL 124

Query: 123 PYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +D+G  R+G +  +A L       +     +  + +H + AD         Q+++
Sbjct: 125 KIHLAIDSGMGRIGFNEDDAFLKANDYLLSHPEYDVEGMFTHFSTADCHDLEYFDSQVKK 184

Query: 182 FRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KINKSHPM 232
           F         K       +S+  L        L R GI++YG          +I     +
Sbjct: 185 FDHFKKMLRIKPKYIHCDNSAASLFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQPKFTL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G       
Sbjct: 245 QPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF------ 298

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VAL 348
                 K  +     PI+G++ MD  M  + + + +  G  +++   D K  +    VA 
Sbjct: 299 ------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNIKAVAD 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            + T +Y++   +  R  + Y
Sbjct: 351 YANTIHYEIACLLSDRVPREY 371


>gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
 gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
          Length = 823

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 155/369 (42%), Gaps = 19/369 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N++     L    +   +VK  AYG G  +IA  +   G     V   +E
Sbjct: 463 LEINLNALTHNYNFYKSRLKPETKVMVMVKAFAYGGGSVEIANHIQTMGADYLAVAFTDE 522

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           GV LR +     I VL         +     L PV+ S       S             L
Sbjct: 523 GVTLRKHGISLPIMVLNP-MEESIDLCHQYELEPVVYSPAFFKMVSNYCQAHDSKLSIHL 581

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            +DTG +RLG   +   +       +   +++ + +HL  AD+      +  QL+ F+ +
Sbjct: 582 DMDTGMHRLGFEEKHLEELGLLLEAETRLRIASVYTHLVGADEEIHKDYSLRQLKLFKKM 641

Query: 186 ISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
               + +          +S+GI+  P++   + R GI LYG       +  ++++ T + 
Sbjct: 642 KGKLEHLLPSSTLFHALNSAGIVAFPDFQMHMVRLGIGLYGVEVTGKHASSLRSISTLKT 701

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I  I+    GE V Y  +  L     IA  ++GYADGY    S             G  
Sbjct: 702 TISQIKTLEPGETVGYSRKGSLPEGGKIATLSLGYADGYDRRFSN----------GKGYV 751

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I+G   PI+G I MDM M D+TD   ++ G+   I+G  I L ++A    T  Y+LL  
Sbjct: 752 IIQGKKAPIIGNICMDMCMVDVTDIEDVKAGNEAIIYGEGISLKELADRIETIPYELLTN 811

Query: 361 IGTRYAKFY 369
           I  R  + Y
Sbjct: 812 ISARVKRIY 820


>gi|172063006|ref|YP_001810657.1| alanine racemase [Burkholderia ambifaria MC40-6]
 gi|171995523|gb|ACB66441.1| alanine racemase [Burkholderia ambifaria MC40-6]
          Length = 373

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 153/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   +   A+++N   +   +  +R  AV+K NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHVRPDAVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P   ++     L   +    QL              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQLDVLIAAKPR-QPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          QLE+F 
Sbjct: 120 IQLKMNSGMNRLGYRPHAFRAAWERAAAAPSIGKITLMMHFANA---DEGEVDWQLEQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
              +   G E S ++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 AATAGIPG-ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMPAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++     E V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSGVELWGDQVKVDDVAEASGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALAHRVP 351


>gi|297562974|ref|YP_003681948.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296847422|gb|ADH69442.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 376

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 156/383 (40%), Gaps = 28/383 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + F   ++DL A+ +N   +   +G      VVK + YG G    A AL   G       
Sbjct: 2   SHFAHARVDLDAISHNARVLRGFAGGTPLMGVVKADGYGHGMLPAARALIAGGATWLGTA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
            + E ++LR       +               + ++   +S      T  ++    G + 
Sbjct: 62  FIGEALELRRAGLTPPVLAWIIPPGEPVAEAVEADIDLGVSDRAVLDTVIAEARRIGRTA 121

Query: 123 PYALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L+ DTG NR G+   +     +    + ++   +++ + SH ACAD+P     + QL
Sbjct: 122 RVQLKADTGLNRGGVGPADWGALAEAAARAEDEGHLRVTGVWSHFACADEPGHPSVARQL 181

Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-HPMQ 233
            RF   +     +        +A+S+ +L  P   F L R GI+ YG +     +   ++
Sbjct: 182 SRFHEALETADKVGLTPEVRHIANSAALLTLPEARFDLVRGGIASYGLSPIPGLTGTGLR 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  +R+ L ++   G  VSYG +    R++ +A+  +GYADG P   +         
Sbjct: 242 PAMTLRSRLALTKRVPEGSGVSYGHRYVTDRETTLALVPLGYADGVPRAATNR------- 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG------PDIKLDDVA 347
               G   + G    + G + MD  + D+ D   +E G+Y  +FG           +D A
Sbjct: 295 ----GPVLLGGRRRAVAGTVCMDQFVVDVGDDA-VEAGEYAVLFGNPEDHPDTPTAEDWA 349

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
               T  Y+++ R+G R  + Y 
Sbjct: 350 EILDTIPYEIVTRVGPRVPREYV 372


>gi|315653948|ref|ZP_07906864.1| alanine racemase [Lactobacillus iners ATCC 55195]
 gi|315488644|gb|EFU78290.1| alanine racemase [Lactobacillus iners ATCC 55195]
          Length = 375

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 151/381 (39%), Gaps = 30/381 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V
Sbjct: 6   HRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E ++LR    +  I VL    P    +  + ++   +  +  L   S  +S G   
Sbjct: 66  AILDEAIELRKAGIKVPILVLGITLPKFALLAAENDISLTVGDLDWLKQASTFLS-GTKL 124

Query: 123 PYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +D+G  R+G +  +A L             +  + +H + AD         Q+++
Sbjct: 125 KIHLAIDSGMGRIGFNEDDAFLKANDYLLAHPEYDVEGMFTHFSTADCHDLEYFDSQVKK 184

Query: 182 FRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KINKSHPM 232
           F         K       +S+  +        L R GI++YG          +I     +
Sbjct: 185 FDHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQPKFTL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G       
Sbjct: 245 QPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF------ 298

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VAL 348
                 K  +     PI+G++ MD  M  + + + +  G  +++   D K  +    VA 
Sbjct: 299 ------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNIKAVAD 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            + T +Y++   +  R  + Y
Sbjct: 351 YANTIHYEIACLLSDRVPREY 371


>gi|328463455|gb|EGF35106.1| alanine racemase [Lactobacillus helveticus MTCC 5463]
          Length = 376

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 146/381 (38%), Gaps = 30/381 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               +K++L A++ N  + M  L  N +  AVVK N YG G  ++A      G   F V 
Sbjct: 7   RPAVVKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
            ++E ++LR       I VL  + P    I    N+   + ++  L    K L    +  
Sbjct: 67  ILDEALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDAEKYLAKENLQL 126

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +D+G  R+G +  +     +    N     +  + +H A AD         Q E+
Sbjct: 127 KIHLGIDSGMGRIGFNEDDEFVAANKFLENNDNFFIEGMFAHFASADSDDETYFKHQCEK 186

Query: 182 FRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------- 232
           F+ + S    K     + +++  +        L R GI +YG     N S P        
Sbjct: 187 FKHMKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIEL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G       
Sbjct: 247 EPALSFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348
                 K  +     PI+G+I MD  M  +   + +  G  + I   +      +   A 
Sbjct: 301 ------KVKVGDEYCPIVGRICMDQFMVKMPKKMLV--GTKVVIISNNPSDPNNIKAAAD 352

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T +Y++   +  R  + Y
Sbjct: 353 YVDTIHYEVACLLNDRLPRVY 373


>gi|332363340|gb|EGJ41125.1| alanine racemase [Streptococcus sanguinis SK49]
          Length = 369

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDNVPPLVHASNSATSLWHSEIVLNAVRLGDIIYGLNPSGTVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  +  +  G  + + G      I + DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQAYPL--GTPVALIGNSGAETITVTDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|194364223|ref|YP_002026833.1| alanine racemase [Stenotrophomonas maltophilia R551-3]
 gi|194347027|gb|ACF50150.1| alanine racemase [Stenotrophomonas maltophilia R551-3]
          Length = 355

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 163/369 (44%), Gaps = 20/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L G  +  A++K +AYG G  + A AL       F V +
Sbjct: 2   RPARALIDLGALRSNYRLARELGGG-KALAIIKADAYGHGAVRCAQAL-EGEADGFGVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     A I +L GI       ++ + +    + S  QL   +          
Sbjct: 60  IEEALELRQAGIGAPILLLEGIFEASDMALVAEHDFWFAVGSPWQLEALAAF-DSPRPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGL +                +  ++++HLA AD+  S     Q   F 
Sbjct: 119 VWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERVVLMTHLARADELDSERTHEQAATFA 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
             I   +G E S+ +S  +L  P+      RPG+ LYG     + +     ++ V+T ++
Sbjct: 179 RAIDGLEG-ETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDNTDLTARLRPVMTMQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I  R   +GE V YG +      + + V A+GYADGYP                G   
Sbjct: 238 KVIAERWIESGEPVGYGARFVSKARTRVGVVALGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    ++G+++MDM   D+T      VG  ++++G    L ++A   G + Y L   
Sbjct: 287 LIDGQPGALIGRVSMDMLTVDLTAHPQAGVGSVVELWGNAPTLSELAPRCGVSAYQLPCG 346

Query: 361 IGTRYAKFY 369
           +  R A+ Y
Sbjct: 347 V-KRVARVY 354


>gi|304405127|ref|ZP_07386787.1| alanine racemase [Paenibacillus curdlanolyticus YK9]
 gi|304346006|gb|EFM11840.1| alanine racemase [Paenibacillus curdlanolyticus YK9]
          Length = 391

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 153/384 (39%), Gaps = 29/384 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R +I L AL+ N  +            A VK NAYG G   IA      GV    V 
Sbjct: 6   RATRAEISLDALRVNLTAFRQAIPEGMLLMASVKANAYGHGAVGIAREAEAFGVDYMGVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E ++LR       I VL  +      +  D ++   +     L   + L   G    
Sbjct: 66  FLDEAIQLRQAGITKPILVLGYVPAAGLAVARDYDITIALFRYDILEAAAALPENGKQLA 125

Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++D+G  RLG+    EA  F   +   K  ++  + +H + AD+        Q ERF
Sbjct: 126 VHIKIDSGMGRLGMLPGLEAERFIERALTVKQLRVEGLFTHYSKADELDKAYTEQQYERF 185

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQT 234
             ++ + +           A+S+  +  PN+   + R GI +YG         K   ++ 
Sbjct: 186 NGVVDYVRNNALPISLFHAANSATGIDTPNWGHGMLRLGIGMYGLYPSAQVNQKEIALEP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +  + + + A     +SYG +   +    I    IGYADG+   LSG         
Sbjct: 246 VMSLKTAVAMTKTAPEHWGISYGARYVTSGQERIGTLPIGYADGFSRMLSG--------- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL----SIEVGDYIQIFGPD----IKLDDV 346
               +  ++G  VPILG I MD  M  +  +      ++  + + I G      I  DD+
Sbjct: 297 --KAEALVRGTRVPILGTICMDQCMIALDPAEQGGVQVQADEEVVIMGRQGDEVITADDI 354

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A   GT NY++   +  R  + + 
Sbjct: 355 ADKLGTINYEVTCMLAARVPRVFV 378


>gi|171057608|ref|YP_001789957.1| alanine racemase [Leptothrix cholodnii SP-6]
 gi|226711053|sp|B1Y2H6|ALR_LEPCP RecName: Full=Alanine racemase
 gi|170775053|gb|ACB33192.1| alanine racemase [Leptothrix cholodnii SP-6]
          Length = 377

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 162/377 (42%), Gaps = 26/377 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL +N       +G+A+  AV+K NAYG G E++ PAL   G     +  
Sbjct: 3   RPIEALIHPDALAHNLLQARRHAGDAKLWAVIKANAYGHGIERVWPALL--GADGLAMLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R    +  + +L G    ++ ++    NL  V+    Q+ + +        H 
Sbjct: 61  LDEAQRVRNLGWRGPVLLLEGCFEARDLELCSRLNLWHVVHHDDQIGWLAAH-KTHQPHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG + Q                   +++H + AD P    +  + Q+ R
Sbjct: 120 VFLKMNSGMNRLGFTPQALRSAWVRLNALPQVDEISLMTHFSDADSPRPGADGIAAQVAR 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPN---YHFQLTRPGISLYGGTDKINKS----HPMQT 234
           F        G E SL++S+ IL             R GI  YG +    +       ++ 
Sbjct: 180 FVEATHDLPG-ERSLSNSAAILRHCERAEVRADWVRSGILSYGSSPDHPQHDIGHWNLRP 238

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T  +R+I  ++  AG+ V YG +    +   I + A GYADGYP    G     +P  
Sbjct: 239 AMTLRSRLIATQQLQAGDSVGYGSRFVAQQPMRIGIVACGYADGYPRHAPGDTGNATP-- 296

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALA 349
                  + G     +G+++MDM   D+++  +  VG  + ++G       + +D VA A
Sbjct: 297 -----VLVDGLRTHTVGRVSMDMLAVDLSELPAAGVGSEVTLWGHGPHGSLLPIDAVAQA 351

Query: 350 SGTTNYDLLVRIGTRYA 366
           +GT  Y+L+  +  R  
Sbjct: 352 AGTIGYELMCALAQRVP 368


>gi|167722932|ref|ZP_02406168.1| alanine racemase [Burkholderia pseudomallei DM98]
          Length = 349

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 96/365 (26%), Positives = 155/365 (42%), Gaps = 23/365 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + NAR  +VVK NAYG G E + PAL  AG     +  
Sbjct: 3   RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +  I D   L   +    Q    +   +      
Sbjct: 61  LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQFKLLTAAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANA---DEGEIDWQMSVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG      R+  I V A GYADGYP                G  
Sbjct: 236 SRIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMC 344

Query: 360 RIGTR 364
            +  R
Sbjct: 345 ALARR 349


>gi|291294605|ref|YP_003506003.1| alanine racemase [Meiothermus ruber DSM 1279]
 gi|290469564|gb|ADD26983.1| alanine racemase [Meiothermus ruber DSM 1279]
          Length = 365

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 155/375 (41%), Gaps = 32/375 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               L+I+L AL +N++ + + +GN +   VVK NAYG G  ++   L   G     V +
Sbjct: 2   RPAWLEINLDALAHNYNLLRSRAGNTQVIGVVKANAYGHGAVEVGKELLRLGAWGLAVAT 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            +E  +LR     ARI ++  +HP Q + + + +LIP IS++      + L   G     
Sbjct: 62  TDEARELRKAGIVARILLMGSLHPQQAREVVELDLIPSISTLESAEALNAL---GKPVTV 118

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+ DTG  R+G   +EA     +    +   +  I SH A A++        Q+  F+ 
Sbjct: 119 HLEFDTGMGRVGFQPEEAPQVKEHLVRYENLLVQGIYSHFADAEE-DVLWTKEQIAHFKQ 177

Query: 185 LISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
           +   +  G    L +++G      Y     RPGI LYG    +     ++ +    A+  
Sbjct: 178 VQQVFGPGYFYHLCNTAGTFNFGEYGLSAVRPGIGLYGLLPHL----GLKPIARLLAKPT 233

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +++   G  + Y G         IA   +GYADG P  +    +              +
Sbjct: 234 QVKELPPGRRIGYSGLYTTQGREWIATLPVGYADGIPRLVFNRATVRYYPDD-------Q 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQ---------IFGPDIKLDDVALASGTTN 354
               P++G+++MD     +   + +E    +          ++G        A  +GT +
Sbjct: 287 PCTCPVVGRVSMDQITVKLPGPVGLEQVFEVVTPDFDPTSSLWG-------WAELTGTVS 339

Query: 355 YDLLVRIGTRYAKFY 369
           Y+  VR+  R  + Y
Sbjct: 340 YEPAVRLAARLPRVY 354


>gi|291087150|ref|ZP_06345528.2| alanine racemase [Clostridium sp. M62/1]
 gi|291075783|gb|EFE13147.1| alanine racemase [Clostridium sp. M62/1]
          Length = 414

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 155/392 (39%), Gaps = 37/392 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++ +   I L  ++ N   + A L        VVK + YG G  + A A     V  + V
Sbjct: 13  SDRICALIHLDRIEQNMKEIAAGLPEGTAVIGVVKADGYGHGAAETA-AAIEPYVSGYAV 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121
            + +E ++LR       + VL  +   + + +   ++ PVI        +SKL    G+ 
Sbjct: 72  ATADEALELRKSGVSLPVLVLGSVRDSRFRELLAADVRPVIFEEETAEAFSKLAGEAGIR 131

Query: 122 HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L VD G +R+GL   +E+L+      +     +  + +H   AD+    V   Q E
Sbjct: 132 GSVHLAVDAGMSRIGLKPSEESLEMIDRISSLPGLFIEGLFTHFPRADEEDKAVTKRQFE 191

Query: 181 RFRTLISHY-----------KGIEASLASSSGILLGPNY----HFQLTRPGISLYGGTDK 225
            FR   +             K +     +S+GI+              R GI +YG    
Sbjct: 192 DFRNFAAQVSELLTKKEQGRKKLICHCMNSAGIIDSHRMPEGMEMDAVRAGICIYGLYPS 251

Query: 226 INKSHPM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                        +  ++ I  I++   G  VSYGG     R   +A    GY DGYP  
Sbjct: 252 GEVDRNRIRLLPAMELKSYITYIKEIEPGTAVSYGGTFVARRPMRVATVCAGYGDGYPRG 311

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---- 338
           LSG            G+  I+G    ILG+I MD  M D+T+    E  D + + G    
Sbjct: 312 LSGR-----------GEVLIRGKRAKILGRICMDQFMADVTEIPEAEKWDTVTLVGRDGK 360

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            +I ++++A   G  +Y++   IG R  + Y 
Sbjct: 361 EEITMEELAAQCGGFHYEIPCLIGKRVPRIYV 392


>gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 821

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 108/372 (29%), Positives = 163/372 (43%), Gaps = 23/372 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL  + +N +     L    +T  +VK  AYG    +IA  L    V    V   +E
Sbjct: 462 LEIDLNKITHNLNFYRARLKPGVKTMVMVKAFAYGSSSHEIANWLEFQNVDYLAVAYADE 521

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
           GV LR +  Q  I V+    P   +++   NL P + S      Y+       S     L
Sbjct: 522 GVILRQHGIQLPIMVMNP-DPRSFELLHQYNLEPELYSETIFKDYASYTRNHKSLLKVHL 580

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTL 185
           ++DTG +RLG    E         +    +++ I SHLA +D+   +  ++ Q   F+ L
Sbjct: 581 KLDTGMHRLGFEAHEIEQLQLLLRHNPQLKVASIFSHLAASDEAMHNGFSAQQAMSFKKL 640

Query: 186 IS------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                    YK I   L +S GI   P+Y F + R GI LYG       S  +Q+V T +
Sbjct: 641 AESLVDFLGYKPI-LHLLNSPGISRFPDYQFDMVRLGIGLYGVDPTGIYSGQLQSVSTLK 699

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I  ++    GE + Y  +     D   A  +IGYADG+    S             GK
Sbjct: 700 TVISQVKHIKKGETIGYARRGVANEDMKTATISIGYADGFNRKFSQGI----------GK 749

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G + P++G + MDMTM ++T+    + GD + +FG    + D+A A  T  Y++L 
Sbjct: 750 VLINGILAPVIGNVCMDMTMVEVTNI-DCKAGDEVIVFGEGPNISDMASAIDTIPYEILT 808

Query: 360 RIGTRYAKF-YT 370
            I  R  +  YT
Sbjct: 809 NISERVKRVFYT 820


>gi|167565411|ref|ZP_02358327.1| alanine racemase [Burkholderia oklahomensis EO147]
          Length = 374

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 99/367 (26%), Positives = 157/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+  N   +   +  +R  +VVK NAYG G E+I PAL  A      +  
Sbjct: 3   RPIVARIHPDAVARNLAIVRQKAPRSRIWSVVKANAYGHGIERIYPAL--ADADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       I +L GI    +  I D   L   +    QLT  +          
Sbjct: 61  LDEAVRVRELGWTKPILLLEGIFEAADVEIADRHRLTVAVHGDEQLTLLTSA-KTARPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPGAFRAAWERAAAAPSIGDIALVMHFANA---DEGEIDWQMRAFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
            +     G E +L++S+ +L  P  H    RPG  LYG +           P+Q  +T  
Sbjct: 177 AVTDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHLADVPLQPAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++   AGE V YG +    R+  I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAAGETVGYGRRFTAEREMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+LL 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGAQVRVDDVAEAAGTIGYELLC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|77406426|ref|ZP_00783484.1| alanine racemase [Streptococcus agalactiae H36B]
 gi|77174959|gb|EAO77770.1| alanine racemase [Streptococcus agalactiae H36B]
          Length = 366

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 160/377 (42%), Gaps = 27/377 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   R  IDL A+ NN  S+      + +T AVVK NAYG G  +++  + +  V  F V
Sbjct: 6   HRPTRALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKYIESI-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I VL  + P Q  +  + N+   ++S+  L             
Sbjct: 65  SNLDEAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAVDLSGL 124

Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++VD+G  R+G+  L E          +    +  I +H A AD+  +   + QL  
Sbjct: 125 EVHIKVDSGMGRIGVRQLDEGNKLISELG-ESGASVKGIFTHFATADEADNCKFNQQLTF 183

Query: 182 FRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F+  IS           ++S+  L      F   R G+ +YG       ++  +P+   +
Sbjct: 184 FKDFISGLDNCPDLVHASNSATSLWHSETIFNAVRLGVVMYGLNPSGTDLDLPYPINPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+ ++ +++   G  V YG   ++T D  +    IGYADG+   + G           
Sbjct: 244 SLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGFS--------- 294

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G +  I+G+++MD     +    +  +G  +   G      I   DVA    T
Sbjct: 295 ---VIVNGELCEIIGRVSMDQMTIRLPQKYT--IGTKVTXIGQQGSCNITTTDVAQKRQT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY++L  +  R  ++Y
Sbjct: 350 INYEVLCLLSDRIPRYY 366


>gi|238754895|ref|ZP_04616245.1| Alanine racemase, catabolic [Yersinia ruckeri ATCC 29473]
 gi|238706906|gb|EEP99273.1| Alanine racemase, catabolic [Yersinia ruckeri ATCC 29473]
          Length = 357

 Score =  355 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 26/369 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   + L+A  +N + +  L+ +A+  +VVK NAYG G  +I  +L  A    F +  
Sbjct: 3   RPISATLHLSAFTHNLNLVRGLAPDAKVWSVVKANAYGHGLARIWRSL--ATTDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E V LR    Q  I +L G    Q+ ++ D   L  V+ S  QL    +         
Sbjct: 61  LNEAVLLREQGWQGPILLLEGFFQPQDLVLLDHYRLTTVVHSDWQLEAIQRARLTA-PLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG  + +       + +        ++SH A AD+P+        ++F 
Sbjct: 120 VYLKINSGMNRLGFPVGQTHAVWLWAKSLANIGQITLMSHFANADNPTGVT-----QQFD 174

Query: 184 TLISHYKGI--EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
            ++     I    S A+S+  L     H    RPGI LYG +            +Q  ++
Sbjct: 175 HIVHASAKIAAPRSFANSAATLWHSRTHADWIRPGIILYGASPSGKVADIADSGLQPTMS 234

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             ++I+ I+    G  V YG +   +    I + A GYADGYP                G
Sbjct: 235 LHSKILAIQDLSKGHSVGYGSRYLASDAQRIGIVACGYADGYPRHA-----------PTG 283

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              ++ G +   LG I+MDM M D+T      +G  ++++G ++ +D+VA  +GT  Y+L
Sbjct: 284 TPIWVDGVLTRTLGTISMDMLMLDLTSCPQAMIGSQVELWGKNLPIDEVAATAGTVGYEL 343

Query: 358 LVRIGTRYA 366
           +  + +R  
Sbjct: 344 MCALASRVP 352


>gi|60680368|ref|YP_210512.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis NCTC 9343]
 gi|60491802|emb|CAH06560.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis NCTC 9343]
 gi|301161901|emb|CBW21445.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis 638R]
          Length = 840

 Score =  355 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 150/372 (40%), Gaps = 27/372 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + L    +   +VK +AYG G  +IA  L         V   +E
Sbjct: 482 LEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 541

Query: 68  GVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           G  LR     A I ++    P     K +FD  L P + +   L    K        + P
Sbjct: 542 GSDLRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFP 598

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF 182
             +++DTG +RLG   ++         N+       + SH   +D          Q+ER+
Sbjct: 599 IHVKLDTGMHRLGFEEKDIPQLIRRLKNQNALIPRSVFSHFVGSDSAQFDAFTRQQIERY 658

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
             +    +      I   + +++GI   P   F + R GI LYG +   N       V T
Sbjct: 659 EKMSKELQDAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDNSIINN--VST 716

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I+ IR     + V Y  +  L R S IA   IGYADG    L              
Sbjct: 717 LKTTILQIRDVAEEDTVGYSRKGHLIRPSRIAAIPIGYADGLNRHLGCGH---------- 766

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           G   + G   P +G I MD+ M D+TD      GD   IFG ++ +  ++ A  T  Y++
Sbjct: 767 GYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDELPITVLSDALETIPYEV 825

Query: 358 LVRIGTRYAKFY 369
           L  I TR  + Y
Sbjct: 826 LTGISTRVKRVY 837


>gi|238765457|ref|ZP_04626377.1| Alanine racemase, catabolic [Yersinia kristensenii ATCC 33638]
 gi|238696314|gb|EEP89111.1| Alanine racemase, catabolic [Yersinia kristensenii ATCC 33638]
          Length = 355

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 96/366 (26%), Positives = 161/366 (43%), Gaps = 22/366 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   ++L+AL +N   +   +  A+  +VVK NAYG G  +I   L  A    F +  
Sbjct: 3   RPISATLNLSALHHNLSLVRQRAKTAKIWSVVKANAYGHGLARIWSGL--AATDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR       I +L G    Q+ ++ D   L   + S  QL              
Sbjct: 61  LNEAILLREQGWHGPILLLEGFFQPQDLVLLDHYRLTTSVHSDWQLEAIKAARLTA-PLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+ ++G NRLG  + +A      + +        ++SH A A   +S     Q  + +
Sbjct: 120 IYLKFNSGMNRLGFPVGQAQAVWQWAKSLSNVGEVTLMSHFANA--DNSIGVDEQFTQIQ 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAE 239
               H        A+S+ IL  P  H+   RPGI LYG +   + +      ++ V++  
Sbjct: 178 QATGHIPAARC-FANSAAILRNPQTHYDWVRPGIILYGASPSGDMADIAGMGLRPVMSLR 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   AG+ V YGG+ + +    I V A GYADGYP                G  
Sbjct: 237 SEIIAVQSLSAGQRVGYGGRYRASGAQRIGVVACGYADGYPRLA-----------PSGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G I+MDM   D+T     ++G  ++I+G ++ +D VA A+GT  Y+L+ 
Sbjct: 286 IMVDGILTHTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVLIDQVAKAAGTVGYELMC 345

Query: 360 RIGTRY 365
            + +R 
Sbjct: 346 ALASRV 351


>gi|260171780|ref|ZP_05758192.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. D2]
 gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 846

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 153/373 (41%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK +AYG G  +IA +L    V    V   +
Sbjct: 487 LEVNLGAMVANLNHYRSMLRHSETKVICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     A I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 547 EGSELRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 603

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG ++++         N+       + SH   +D P        Q+E 
Sbjct: 604 PIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQFDAFTREQIEL 663

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P+  F + R GI LYG +   N    +  V 
Sbjct: 664 FEKGSQELQAAFSHKILRHICNTAGIERFPDAQFDMVRLGIGLYGVSPIDN--SIIHNVS 721

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 722 TLKTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHLG----------RG 771

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++    T  Y+
Sbjct: 772 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYE 830

Query: 357 LLVRIGTRYAKFY 369
           +L  I TR  + Y
Sbjct: 831 VLTSISTRVKRVY 843


>gi|109947823|ref|YP_665051.1| hypothetical protein Hac_1313 [Helicobacter acinonychis str.
           Sheeba]
 gi|122973245|sp|Q17WC4|ALR_HELAH RecName: Full=Alanine racemase
 gi|109715044|emb|CAK00052.1| unnamed protein product [Helicobacter acinonychis str. Sheeba]
          Length = 377

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 170/382 (44%), Gaps = 32/382 (8%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D ++L++N+H+   A+  +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVDTSSLRHNFHAAKNAIPKDAHIMAVVKANAYGVGALKASEVFLQEGAHYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
            ++LR   P+  I +L        +++ D NL  +I S+ Q   +S+            L
Sbjct: 68  ALELRSCFPKTPILILGYSPNSNAQMLIDNNLTAMIFSLEQAGVFSQAALKSQKHLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++           ++  I +HL+ A+         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEMIKKIRALNGLEVEGIFTHLSNANANIKTHAKNQMKIFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQT-- 234
           +     + IE       +S+GIL   N +      L RPGI LYG           QT  
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNNNENRFLNLYRPGIMLYGFYPSNEMKQSCQTIL 247

Query: 235 --VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             VV+ +A+I+ I++   GE V YG       ++LI   A+GYADG    L         
Sbjct: 248 NNVVSLKAKIVQIKRVKKGEFVGYGKHFYTNEETLIGTLALGYADGLVRDLGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348
                 +  I   + P++GK+ MD     + D +  + GD + +FG         +++A+
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-DGIEAKEGDEVILFGDKSTKANDANEIAM 355

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
              T  Y+ +  +  R  + Y 
Sbjct: 356 LLNTIPYETISTLSKRLERVYV 377


>gi|240113626|ref|ZP_04728116.1| Alr [Neisseria gonorrhoeae MS11]
 gi|254494089|ref|ZP_05107260.1| alanine racemase [Neisseria gonorrhoeae 1291]
 gi|268599686|ref|ZP_06133853.1| alanine racemase [Neisseria gonorrhoeae MS11]
 gi|226513129|gb|EEH62474.1| alanine racemase [Neisseria gonorrhoeae 1291]
 gi|268583817|gb|EEZ48493.1| alanine racemase [Neisseria gonorrhoeae MS11]
          Length = 352

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 91/358 (25%), Positives = 161/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +   +    ++ V+    RI 
Sbjct: 179 LGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGDSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|15677500|ref|NP_274656.1| alanine racemase [Neisseria meningitidis MC58]
 gi|20137239|sp|Q9JYC4|ALR_NEIMB RecName: Full=Alanine racemase
 gi|7226902|gb|AAF42000.1| alanine racemase [Neisseria meningitidis MC58]
 gi|316984996|gb|EFV63950.1| alanine racemase [Neisseria meningitidis H44/76]
 gi|325140795|gb|EGC63306.1| alanine racemase [Neisseria meningitidis CU385]
 gi|325199755|gb|ADY95210.1| alanine racemase [Neisseria meningitidis H44/76]
          Length = 352

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL     +     +  
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALL-IRHWKKTVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGGDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|325134740|gb|EGC57378.1| alanine racemase [Neisseria meningitidis M13399]
 gi|325144906|gb|EGC67192.1| alanine racemase [Neisseria meningitidis M01-240013]
 gi|325205630|gb|ADZ01083.1| alanine racemase [Neisseria meningitidis M04-240196]
          Length = 352

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL     +        
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALL-IRHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTKGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|227502721|ref|ZP_03932770.1| alanine racemase [Corynebacterium accolens ATCC 49725]
 gi|227076451|gb|EEI14414.1| alanine racemase [Corynebacterium accolens ATCC 49725]
          Length = 365

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 156/372 (41%), Gaps = 22/372 (5%)

Query: 6   FLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            L+  IDL A+ +N   +   +  + +   VVK +AYG G E++ P +  AG     V +
Sbjct: 1   MLKTTIDLAAIAHNVRLIKEKIGPDVKLMCVVKADAYGHGAERVVPVMLEAGADSIGVAT 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + E V+LR     + I           +    + +   ++S  Q     KL+   +    
Sbjct: 61  LTEAVQLRRMGVDSPIAAWIWQSDQVLEEALASGIQIAVNSPAQ---AQKLVEAEIPAEI 117

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF-- 182
            ++V+TG +R G+   +  +            +  ++SH ACADDP +  N  Q E F  
Sbjct: 118 YIKVETGMHRSGVDKADWDEVFALLREAPHITVLGLMSHFACADDPDNAHNDTQEEEFRR 177

Query: 183 ---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                  +  +     LA+S   L  P+ HF   R GI+ YG      + H ++  +T  
Sbjct: 178 ALDAARAAGLECPVNHLANSPATLSRPSAHFDQVRVGIACYGLEPIAGRDHGLRPAMTWS 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +  ++     E  SYG      +   +A    GYADG P    G             +
Sbjct: 238 GNVFGVKPIDKNEATSYGRTWSADKPGFLATVDCGYADGLPRAYQGHL-----------Q 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357
             I G + P +G++ MD  + D+ D+   I  GD + IFG   +   ++A A GT NY++
Sbjct: 287 VGIGGRLYPQVGRVCMDQIVVDLGDNPHGIAPGDEVTIFGQGGMSATELADAVGTINYEV 346

Query: 358 LVRIGTRYAKFY 369
           + R   R  + Y
Sbjct: 347 VCRPTGRTEREY 358


>gi|53712185|ref|YP_098177.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis YCH46]
 gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46]
          Length = 848

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 150/372 (40%), Gaps = 27/372 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + L    +   +VK +AYG G  +IA  L         V   +E
Sbjct: 490 LEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 549

Query: 68  GVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           G  LR     A I ++    P     K +FD  L P + +   L    K        + P
Sbjct: 550 GSDLRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFP 606

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF 182
             +++DTG +RLG   ++         N+       + SH   +D          Q+ER+
Sbjct: 607 IHVKLDTGMHRLGFEEKDIPQLIRRLKNQNALIPRSVFSHFVGSDSAQFDAFTRQQIERY 666

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
             +    +      I   + +++GI   P   F + R GI LYG +   N       V T
Sbjct: 667 EKMSKELQDAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDNSIINN--VST 724

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I+ IR     + V Y  +  L R S IA   IGYADG    L              
Sbjct: 725 LKTTILQIRDVAEEDTVGYSRKGHLIRPSRIAAIPIGYADGLNRHLGCGH---------- 774

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           G   + G   P +G I MD+ M D+TD      GD   IFG ++ +  ++ A  T  Y++
Sbjct: 775 GYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDELPITALSDALETIPYEV 833

Query: 358 LVRIGTRYAKFY 369
           L  I TR  + Y
Sbjct: 834 LTGISTRVKRVY 845


>gi|314985124|gb|EFT29216.1| alanine racemase [Propionibacterium acnes HL005PA1]
 gi|314990744|gb|EFT34835.1| alanine racemase [Propionibacterium acnes HL005PA3]
          Length = 375

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 149/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILNLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter heparinus DSM 2366]
 gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366]
          Length = 817

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 161/369 (43%), Gaps = 22/369 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL  N       L    +  A+VK  +YG G  +IA  L    V    V   +E
Sbjct: 460 MEIDLNALAGNLQFYRSKLLPGVKVMAMVKAFSYGSGSFEIANLLQYHKVDYLAVAYTDE 519

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ LR       I V+    P     I   NL P I ++  L  +   +     +P  L+
Sbjct: 520 GISLRKAGITLPIMVMSP-EPSAFDAIIRYNLEPEIYNIEILQGFIGFLKTD-QYPIHLK 577

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRTLI 186
           +DTG +RLG    +  D        +  +++ + SHL  ++D         Q+ERF  + 
Sbjct: 578 IDTGMHRLGFEEPDLSDLLKVLTETRKVKVASVFSHLVGSEDGLHDEFTRHQIERFTAMT 637

Query: 187 S------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
                  HY  I   ++++SGI   P    ++ R GI LYG    +  +  +QTV   + 
Sbjct: 638 ELISETLHYPFI-RHISNTSGISRHPETQLEMVRLGIGLYGFDAALKNNTALQTVAILKT 696

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I  I+     E V YG +  L +   IA   IGYADGY                  G+ 
Sbjct: 697 TITQIKHLKPNETVGYGRKGLLPKGGTIATVKIGYADGYSRAFGNGT----------GRM 746

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            IKG +VP +G I MDM M D+T  L ++ GD + +F  ++ +  +A   GT  Y++L  
Sbjct: 747 LIKGKLVPTVGVICMDMCMLDVTG-LDVKTGDEVIVFNNELSIAQLATQIGTIPYEILTN 805

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 806 VSQRVKRVY 814


>gi|304386876|ref|ZP_07369138.1| alanine racemase [Neisseria meningitidis ATCC 13091]
 gi|304339035|gb|EFM05127.1| alanine racemase [Neisseria meningitidis ATCC 13091]
          Length = 352

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL     +        
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALL-VRHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|218768673|ref|YP_002343185.1| alanine racemase [Neisseria meningitidis Z2491]
 gi|20137238|sp|Q9JTA6|ALR_NEIMA RecName: Full=Alanine racemase
 gi|121052681|emb|CAM09022.1| alanine racemase [Neisseria meningitidis Z2491]
 gi|319410904|emb|CBY91298.1| alanine racemase [Neisseria meningitidis WUE 2594]
          Length = 352

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASVYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|332291955|ref|YP_004430564.1| alanine racemase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170041|gb|AEE19296.1| alanine racemase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 365

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 161/370 (43%), Gaps = 21/370 (5%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+IDL AL++N+  +   ++ + +  AVVK   YG     +A  L   GV  F V  V 
Sbjct: 5   RLEIDLAALRHNYSYLRKKVAPSVKMMAVVKAFGYGSDAGAVAQELEMLGVDYFAVAYVS 64

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124
           EG+ LR       I VL+   P     + +  L P I S+  +  ++         ++P 
Sbjct: 65  EGIALRDAGITTPILVLHP-QPDTFDELIERCLEPSIYSIRMMELFTAFAKGKGQENYPI 123

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF- 182
            L+ +TG NRLG    +              +++ + SHL  ++DP        Q+ +F 
Sbjct: 124 HLKFNTGLNRLGFLNTDVSWILDRLRENVSVKVASLFSHLVASEDPAEEEFTLNQILQFT 183

Query: 183 ---RTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
              + L+     +    + ++SG++     HF   R GI LYG  +    +  ++ V   
Sbjct: 184 NISKELLQALDYVPFMHMTNTSGVINYHRAHFDCVRIGIGLYGYGNSKEDTKKLKPVARL 243

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ I  I     G+ + Y    K T + + A   IG+ADG   +L              G
Sbjct: 244 KSVISQIHHIKPGQSIGYNRAYKATEEIVTATLPIGHADGISRSLGNGV----------G 293

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I G   PI+G + MDM M DIT   S + GD +++FG     + +A    + +Y+LL
Sbjct: 294 YVMIAGQKAPIVGNVCMDMLMVDITGI-SCKEGDDVEVFGETTSAETLAGEMQSISYELL 352

Query: 359 VRIGTRYAKF 368
             IG R  + 
Sbjct: 353 TAIGQRVKRV 362


>gi|332161937|ref|YP_004298514.1| alanine racemase, catabolic [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605542|emb|CBY27040.1| alanine racemase, catabolic [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666167|gb|ADZ42811.1| alanine racemase, catabolic [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863879|emb|CBX73970.1| alanine racemase [Yersinia enterocolitica W22703]
          Length = 363

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 165/366 (45%), Gaps = 22/366 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   ++L+AL +N + + +  G A+  +VVK NAYG G  ++   L  A    F +  
Sbjct: 3   RPISATLNLSALHHNLNVVRSHVGTAKIWSVVKANAYGHGLARVWQGL--AATDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    Q  I +L G    Q+ ++ D   L   + S  QL              
Sbjct: 61  LNEAILLREQGWQGPILLLEGFFQAQDLVLLDHYRLTTAVHSDWQLEVIKAARLTA-PLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+ ++G NRLG  + +A      + +        ++SH A AD+P       Q  + +
Sbjct: 120 IYLKFNSGMNRLGFPIGQAEAVWQWANSLSNVGEITLMSHFANADNPIG--VDEQFVQIQ 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
               H        A+S+ IL  PN H+   RPGI LYG +   +        ++ V++  
Sbjct: 178 QASGHIPAARC-FANSAAILRNPNTHYDWVRPGIILYGASPSGDITDIAGLGLRAVMSLH 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   AG+ V YG + + T    I V A GYADGYP                G  
Sbjct: 237 SEIIALQSLSAGQSVGYGSRYRATGSQRIGVVACGYADGYPR-----------VAPTGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G I+MDM   D+T     ++G  ++I+G ++ +D+VA A+GT  Y+L+ 
Sbjct: 286 IMVDGILTHTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVPIDNVAQAAGTVGYELMC 345

Query: 360 RIGTRY 365
            + +R 
Sbjct: 346 ALASRV 351


>gi|254805407|ref|YP_003083628.1| Alanine racemase [Neisseria meningitidis alpha14]
 gi|254668949|emb|CBA07214.1| Alanine racemase [Neisseria meningitidis alpha14]
          Length = 352

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL     +        
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALL-VRHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGGDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRHA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|217967880|ref|YP_002353386.1| alanine racemase [Dictyoglomus turgidum DSM 6724]
 gi|217336979|gb|ACK42772.1| alanine racemase [Dictyoglomus turgidum DSM 6724]
          Length = 378

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 104/371 (28%), Positives = 163/371 (43%), Gaps = 28/371 (7%)

Query: 10  KIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           +I+L+ L +N   +    G      AVVK +AYG G + I+  L   A +  F V  ++E
Sbjct: 9   EINLSFLLDNLKVIKEKVGGKVDVIAVVKADAYGHGAKVISLFLQKYANINTFAVAHIDE 68

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           G+ LR      +I VL           F+  L PVIS +  L    K   +        L
Sbjct: 69  GIFLRKIGVNKKILVLSPQLKSSIPYYFEYELTPVISDIEFLDELGKYSNNKDKKLKVHL 128

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             DTG  R G    E+ +            L  I SHL+  ++     N  Q + F  + 
Sbjct: 129 IFDTGMGREGFLPSESEEILKLLRRYPNLILEGISSHLSNPENKKDPYNIFQKKLFYDIY 188

Query: 187 SHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           + +K   +    +++ GI   P +HF   RPGISLYG  DK+     ++ V+  +ARI L
Sbjct: 189 NQFKDEDLVFHFSNTGGIFNFPEFHFNAVRPGISLYGYGDKL-----LKPVMEIKARITL 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +++   G  V YG      + + IA+  +GYADGY   LS             G+  + G
Sbjct: 244 VKELPEGWGVGYGHTFMTEKSTKIAIVPLGYADGYRRDLSN-----------KGRVIVNG 292

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVR 360
               I+G+++MD    DITD   ++ GD + + G +    +   ++A+ S T  Y++L  
Sbjct: 293 EYCKIIGRVSMDQFTIDITDK-EVKRGDLVTVMGRENEKMVDAQELAILSNTIPYEILTG 351

Query: 361 IG--TRYAKFY 369
            G   R    Y
Sbjct: 352 FGSAKRLKSIY 362


>gi|326803963|ref|YP_004321781.1| alanine racemase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650608|gb|AEA00791.1| alanine racemase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 385

 Score =  355 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 102/393 (25%), Positives = 162/393 (41%), Gaps = 39/393 (9%)

Query: 3   SNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   R+ + +  + +N+     A S  A+T AV+K +AYG G   IA AL  AG + F 
Sbjct: 5   EHRPTRVVVSIPNIVDNYLLFKHAFSPKAKTYAVIKADAYGHGSIPIAKALTEAGAEGFC 64

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V   +E + LR    QA I +L         +    ++   ISS+  L            
Sbjct: 65  VAVTDEALALREAGIQAPILILGITEVEDAWLHAQHDISLTISSLAWLKAAYAQRPTDQE 124

Query: 122 HP---YALQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLIISHLACADDP---SSH 173
            P     L+VD+G  R+GL   +A     +  S +++  +L  I +H A AD        
Sbjct: 125 FPPLKLHLKVDSGMGRIGLRDSQAGQEIIDYISDHQEAFELDGIFTHYATADSDQVKDQD 184

Query: 174 VNSVQLERFRTLISHY------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--- 224
             + Q +RF   I         K      ++++  L  P     + R GI LYG +    
Sbjct: 185 YVAKQSQRFEDFIQALDFSHLNKKPLIHRSNTALALWYPEKTMDIVRLGIGLYGESPAGP 244

Query: 225 --KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
              + +   ++   T E+ ++ ++K  AGE +SYG       D  I    IGYADG P +
Sbjct: 245 DFALPEDMALKPAFTLESELVYVKKLQAGESISYGATYTTESDQWIGTLPIGYADGLPRS 304

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340
            SG             +  I GY  PI+G++ MD  M  +   L +     + + G D  
Sbjct: 305 SSGF------------EVLIAGYKCPIVGRVCMDQCMVALPKELPLHE--KVTLIGSDDQ 350

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
              I   D+AL + T  Y++   I  R  + Y 
Sbjct: 351 GNHISAWDLALYNHTIAYEITCGISERVPRTYV 383


>gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16]
 gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16]
          Length = 848

 Score =  355 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 150/372 (40%), Gaps = 27/372 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + L    +   +VK +AYG G  +IA  L         V   +E
Sbjct: 490 LEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 549

Query: 68  GVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           G  LR     A I ++    P     K +FD  L P + +   L    K        + P
Sbjct: 550 GSDLRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFP 606

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF 182
             +++DTG +RLG   ++         N+       + SH   +D          Q+ER+
Sbjct: 607 IHVKLDTGMHRLGFEEKDIPQLIRRLKNQNALIPRSVFSHFVGSDSAQFDAFTRQQIERY 666

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
             +    +      I   + +++GI   P   F + R GI LYG +   N       V T
Sbjct: 667 EKMSKELQDAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDNSIINN--VST 724

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  I+ IR     + V Y  +  L R S IA   IGYADG    L              
Sbjct: 725 LKTTILQIRDVAEEDTVGYSRKGHLIRPSRIAAIPIGYADGLNRHLGCGH---------- 774

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           G   + G   P +G I MD+ M D+TD      GD   IFG ++ +  ++ A  T  Y++
Sbjct: 775 GYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDELPITVLSDALETIPYEV 833

Query: 358 LVRIGTRYAKFY 369
           L  I TR  + Y
Sbjct: 834 LTGISTRVKRVY 845


>gi|83720249|ref|YP_442531.1| alanine racemase [Burkholderia thailandensis E264]
 gi|167581458|ref|ZP_02374332.1| alanine racemase [Burkholderia thailandensis TXDOH]
 gi|167619567|ref|ZP_02388198.1| alanine racemase [Burkholderia thailandensis Bt4]
 gi|257138740|ref|ZP_05587002.1| alanine racemase [Burkholderia thailandensis E264]
 gi|83654074|gb|ABC38137.1| alanine racemase [Burkholderia thailandensis E264]
          Length = 356

 Score =  355 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 91/367 (24%), Positives = 152/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL NN   +   +  ++  A+VK NAYG G  ++ P L   G   F +  
Sbjct: 3   RPISATIHTAALANNLTVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E VKLR       I +L G     +  + D  +L   + +  Q+    +         
Sbjct: 61  LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRML-ETARLSKPVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + ++       +          +++H + A        + Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYAPEKFRAAWERARACPGIGQITLMTHFSDA--DGERGVAEQMATFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G   SLA+S+ +L  P+ HF   RPGI LYG +   +        +Q  +T  
Sbjct: 178 RGAQGIAGA-RSLANSAAVLWHPSAHFDWVRPGIMLYGASPSGHSADIAGKGLQPTMTLA 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++    G+ V YG          I V A GYADGYP                G  
Sbjct: 237 SELIAVQTLAKGQAVGYGSVFVAEDTMRIGVVACGYADGYPR-----------IAPEGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    I+G+++MDM   D+T      VG  ++++G  + +DDVA    T  Y+L+ 
Sbjct: 286 VVVDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 AVAPRVP 352


>gi|325128679|gb|EGC51545.1| alanine racemase [Neisseria meningitidis N1568]
          Length = 352

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL     +        
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALL-VRHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGGDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|261400907|ref|ZP_05987032.1| alanine racemase [Neisseria lactamica ATCC 23970]
 gi|313667972|ref|YP_004048256.1| alanine racemase [Neisseria lactamica ST-640]
 gi|269209271|gb|EEZ75726.1| alanine racemase [Neisseria lactamica ATCC 23970]
 gi|313005434|emb|CBN86869.1| alanine racemase [Neisseria lactamica 020-06]
          Length = 352

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTEGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|319946373|ref|ZP_08020611.1| alanine racemase [Streptococcus australis ATCC 700641]
 gi|319747526|gb|EFV99781.1| alanine racemase [Streptococcus australis ATCC 700641]
          Length = 375

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 151/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   R  +D+ A+  N   + A       T AVVK NAYG G   +   L    V  F V
Sbjct: 6   HRPTRAYVDVEAIAYNVQQIQAHIPKETLTFAVVKANAYGHGVVPVVERLLPL-VDAFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E +++R    +  I +L         I     +   ++S+  L       +     
Sbjct: 65  SNLDEALEVRQVAGEKPILILGVAPVEHVAIAIKEGIRYTVASLEWLKALLAKKTDLSGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+G    E L            ++  I +H A AD+        QL+RF
Sbjct: 125 KVHIKVDSGMGRIGFRSAEDLQEAMILLRDHGAEVEGIFTHFATADEKDDRHFQNQLQRF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
           + L+            ++S+  L   +  F   R G  +YG      ++   + ++  ++
Sbjct: 185 KCLLELLPFTPKIVHASNSATTLWHADTIFNAVRLGDVMYGLNPSGRELELPYDIRPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E  ++ ++    G+ V YG   + + +  I    IGYADG+   + G            
Sbjct: 245 LETELVHVKPLEVGQTVGYGATYQTSDEEWIGTIPIGYADGWTRDMQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G   PI+G+++MD     +  +    +G  + + G D    I + DVA   GT 
Sbjct: 294 -HVLVDGQFCPIVGRVSMDQITIRLPKAYP--IGTKVVLIGVDGDLAITITDVADYRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  +  R  + Y
Sbjct: 351 NYEVVCVLSDRVPRVY 366


>gi|257887884|ref|ZP_05667537.1| alanine racemase [Enterococcus faecium 1,141,733]
 gi|257823938|gb|EEV50870.1| alanine racemase [Enterococcus faecium 1,141,733]
          Length = 373

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 153/380 (40%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I   A+  N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 6   HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
           ++++EGV+LR       I +L  +      +    +L     +   L   + ++  G   
Sbjct: 66  SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTRGWLQVAAAILEEGKLE 125

Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+ DTG  R+G  + +E  +        ++ +   + +H + AD P     ++Q
Sbjct: 126 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQPDDTYWNLQ 185

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            ERF  ++     +     +++S+  L        + R G+++YG       + + +P+Q
Sbjct: 186 KERFMEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I ++K  AGE + YG          I    IGYADG+   + G        
Sbjct: 246 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   ++G     +G++ MD  M  +     +  G  + + G     +I + DVA  
Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 351

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++   +G R  + Y
Sbjct: 352 LGTIHYEVACGLGQRIPREY 371


>gi|121635291|ref|YP_975536.1| alanine racemase [Neisseria meningitidis FAM18]
 gi|166969422|sp|A1KV59|ALR_NEIMF RecName: Full=Alanine racemase
 gi|120866997|emb|CAM10760.1| alanine racemase [Neisseria meningitidis FAM18]
 gi|254669582|emb|CBA03582.1| Alanine racemase [Neisseria meningitidis alpha153]
 gi|254672097|emb|CBA04784.1| Alanine racemase [Neisseria meningitidis alpha275]
 gi|325133023|gb|EGC55697.1| alanine racemase [Neisseria meningitidis M6190]
 gi|325138687|gb|EGC61240.1| alanine racemase [Neisseria meningitidis ES14902]
 gi|325142822|gb|EGC65192.1| alanine racemase [Neisseria meningitidis 961-5945]
 gi|325198750|gb|ADY94206.1| alanine racemase [Neisseria meningitidis G2136]
          Length = 352

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYQILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL     +        
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALL-IRHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|242371567|ref|ZP_04817141.1| alanine racemase [Staphylococcus epidermidis M23864:W1]
 gi|242350719|gb|EES42320.1| alanine racemase [Staphylococcus epidermidis M23864:W1]
          Length = 382

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 165/382 (43%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           + +F R   L ++L A+  N+   + L  N    +V+K N+YGLG  +IA  L   G   
Sbjct: 2   TEKFYRPTYLNVNLDAILANYQIFDQLHHNKTVISVIKANSYGLGSVRIAQHLMEHGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL--MS 117
           F V +++E ++LR++  +A+I +L  I            +   + S   L    K     
Sbjct: 62  FAVATLDEAIELRMHGIKAKILILGVIRTEDISKAIQHRVALTVPSKAWLKEAIKNIPED 121

Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                    ++DTG  RLG+  ++E  +       ++      + +H A AD+P   +N 
Sbjct: 122 NEKKLWLHAKLDTGMGRLGMKDVEEYREVVDLIDKREHLVFEGVYTHFASADEPGDSMNE 181

Query: 177 VQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231
            Q E F+T+++   K       +S+  LL         R GISLYG         +    
Sbjct: 182 -QFEFFKTVVNQVEKPTYIHTQNSAASLLMDGQFCNAIRLGISLYGYYPSQYVKDHVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      + I+ ++   AGE VSYG   K T +  IA+  IGYADGY   + G      
Sbjct: 241 LRPSAQLVSEIVQVKTLKAGETVSYGRTFKATEEMRIAILPIGYADGYLRAMQG------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                     + G+   ++G++ MD T+  + +   ++VGD + +    I      + +A
Sbjct: 295 ------AYVNVNGHQCEVVGRVCMDQTILRVPE--DVKVGDKVILMDNHIDSPQSAEALA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L  I  R  + Y
Sbjct: 347 EKQQTINYEVLCNISRRLPRIY 368


>gi|126728695|ref|ZP_01744510.1| alanine racemase [Sagittula stellata E-37]
 gi|126710625|gb|EBA09676.1| alanine racemase [Sagittula stellata E-37]
          Length = 345

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 132/366 (36%), Positives = 189/366 (51%), Gaps = 26/366 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             RL IDL AL+ NW ++ ALS    T AVVK +AYGLG EK AP L  AG + FFV   
Sbjct: 3   MARLTIDLGALRANWTALAALSEG-ETGAVVKADAYGLGAEKCAPVLAAAGARTFFVAIA 61

Query: 66  EEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EEG++LR    P   I V  G  PG    I D +L+P+I+S+ Q+  +   +     HP+
Sbjct: 62  EEGLRLRRILGPGPEICVFSGHMPGDRDAIRDADLVPMINSIDQMLMH---VEGLPGHPF 118

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +Q+D+G NRLG+   E       +  +      L++SHLACAD+P   +N+ QL  FR 
Sbjct: 119 GIQLDSGMNRLGMEPAEWSALRDIALAQN---PRLVMSHLACADEPDHAMNARQLAAFRD 175

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           +         SL ++ G LLGP YHF +TRPG+ LYGG   ++     Q VV+ +  +I 
Sbjct: 176 MTDGI-DAPRSLGATGGTLLGPEYHFDMTRPGVGLYGGLPFVDA----QPVVSLDIPVIQ 230

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R  L GE V YG     +  S +A  A GYADG    +                 +   
Sbjct: 231 TRDVLPGETVGYGNTWTASAPSRVATIAGGYADGIHRAMG-----------SAAYVWAGE 279

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
               ILG+I+MD+   D+T    +   D++++ G    +D +A  +GT  Y++L  +G R
Sbjct: 280 TRCKILGRISMDLIAVDVTGLPELP--DHVELIGLHQGVDTLADWAGTIGYEVLTSLGAR 337

Query: 365 YAKFYT 370
           Y + YT
Sbjct: 338 YDRSYT 343


>gi|125624499|ref|YP_001032982.1| alanine racemase [Lactococcus lactis subsp. cremoris MG1363]
 gi|20137246|sp|Q9RLU5|ALR_LACLM RecName: Full=Alanine racemase
 gi|16974088|emb|CAB56755.2| alanine racemase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493307|emb|CAL98277.1| Alr protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071289|gb|ADJ60689.1| alanine racemase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 367

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 154/381 (40%), Gaps = 27/381 (7%)

Query: 1   MHS--NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M +  +      +DL A++NN          NA     VK +AYG G  +++ A+ +  V
Sbjct: 1   MKTSPHRNTSAIVDLKAIRNNIEKFKKHINPNAEIWPAVKADAYGHGSIEVSKAVSDL-V 59

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V++++E ++LR +     I VL GI P    I    N+     S+  L    +  +
Sbjct: 60  GGFCVSNLDEAIELRNHLVTKPILVLSGIVPEDVDIAAALNISLTAPSLEWLKLVVQEEA 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                   + VD+G  R+G+   E  +      +K       I +H A AD         
Sbjct: 120 ELSDLKIHIGVDSGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADETKFKN 179

Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
           Q  RF  +++            +++  L        + R GIS+YG       +     +
Sbjct: 180 QQARFNKIMAGLSRQPKFIHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEI 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  + +  I+K  AGE V YG   + + ++ I    IGYADG+   + G       
Sbjct: 240 EPALSLVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 K  + G    I+G++ MD  M  +  S  +  G  + + G D    I   DVA 
Sbjct: 294 ------KVLVDGKFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKANEITTTDVAD 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY++L  +  R  + Y
Sbjct: 346 WRGTINYEVLCLLSDRIKRIY 366


>gi|167572513|ref|ZP_02365387.1| alanine racemase [Burkholderia oklahomensis C6786]
          Length = 374

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 156/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+  N   +   +  +R  +VVK NAYG   E+I PAL  A      +  
Sbjct: 3   RPIVARIHPDAVARNLAIVRQKAPRSRIWSVVKANAYGHDIERIYPAL--ADADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       I +L GI    +  I D   L   +    QLT  +   +      
Sbjct: 61  LDEAVRVRELGWTKPILLLEGIFEAADVEIADRHRLTVAVHGDEQLTLLASAKTT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPGAFRAAWERAAAAPSIGDIALMMHFANA---DEGEIDWQMRAFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P+Q  +T  
Sbjct: 177 AATDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHLADVPLQPAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++   AGE V YG +    R+  I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAAGETVGYGRRFTAEREMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+LL 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGAQVRVDDVAEAAGTIGYELLC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|145294758|ref|YP_001137579.1| alanine racemase [Corynebacterium glutamicum R]
 gi|166967410|sp|A4QBT0|ALR_CORGB RecName: Full=Alanine racemase
 gi|140844678|dbj|BAF53677.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 361

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 95/372 (25%), Positives = 164/372 (44%), Gaps = 20/372 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L  KIDL A+ +N   +  ++G A+  AVVK NAY  G EK+AP +   G   F V ++
Sbjct: 3   LLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATL 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            E ++LR       +           +   D N+   + S         + +       +
Sbjct: 63  AEAMQLRDIGISQEVLCWIWTPEQDFRAAIDRNIDLAVISPAHAKAL--IDTDAEHIRVS 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++D+G +R G+  QE              +++ + +HLACAD+P +     Q+  FR  
Sbjct: 121 IKIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLACADEPENPETDRQIIAFRRA 180

Query: 186 ISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           ++  +  G+E     + +S   L   + H ++ RPG++ YG      + H ++  +T EA
Sbjct: 181 LALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVAGREHGLKPAMTWEA 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++ ++++  AG+  SYG   +      +AV   GYADG P    G  S            
Sbjct: 241 KVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQGKFS-----------V 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-IKLDDVALASGTTNYDLL 358
            I G   P +G++ MD  +  + D+   +E G    IFG +     D A    T NY+++
Sbjct: 290 TIDGVDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERLDTINYEVV 349

Query: 359 VRIGTRYAKFYT 370
            R   R  + Y 
Sbjct: 350 CRPTGRTVRAYV 361


>gi|325286092|ref|YP_004261882.1| Alanine racemase [Cellulophaga lytica DSM 7489]
 gi|324321546|gb|ADY29011.1| Alanine racemase [Cellulophaga lytica DSM 7489]
          Length = 368

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 99/378 (26%), Positives = 159/378 (42%), Gaps = 21/378 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M       L+I+L  L+ N+  +   L+ N    AVVK  AYG    +IA  +   G   
Sbjct: 1   MPKATETVLEINLNYLEQNYKYLKSKLAPNTMFLAVVKAFAYGSDQVQIAKKITELGADY 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
             V    EGV +R    Q  I VL+       + I   NL P I S   L  + K  S  
Sbjct: 61  LAVAYTSEGVAIRKAGIQTPILVLHP-QEVNFEEIVAYNLEPSIYSARILDQFIKYTSSI 119

Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176
               +P  L+ +TG NRLG    +              +++   SH+A ++D        
Sbjct: 120 NKEDYPVHLKFNTGLNRLGFLKADVPQIVQKIQETTTIKVASAFSHMAASEDLTEKEFTE 179

Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q+++F+++ +   G+        + ++SGIL  P+ HF + R GI LYG  +       
Sbjct: 180 QQIQKFKSISNTLDGLLCYSPIKHMCNTSGILNYPDAHFNMVRSGIGLYGFGNDAKYDVY 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ + + +  I  +      + V Y    K T   + A   +G+ADG             
Sbjct: 240 LKPIASLKTVISQLHNLDPNQSVGYNMAYKATHKMVTATLPLGHADGIYRIYGNQ----- 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G  FI G   PI+G   MDM M D+T+  + + GD + +F      D +A A+G
Sbjct: 295 -----KGFVFINGKKAPIVGNTCMDMIMVDVTNI-NCKEGDEVIVFNEVHTADALATAAG 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y+L+  I  R  + +
Sbjct: 349 TISYELVTGISQRVNRVF 366


>gi|209546891|ref|YP_002278809.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538135|gb|ACI58069.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 377

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++    R  AVVK NAYGLG E++A  LY  G + FFV    E 
Sbjct: 23  LTIDLAALGRNYRKLVSMLAPVRAGAVVKANAYGLGAERVATTLYGEGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           V+LR      A+IFVL G+ PG E    +  ++PV++S+ Q   +S          P  L
Sbjct: 83  VRLRPTLARDAQIFVLNGLQPGNEIACAERGIVPVLNSLTQWRQWSATARMLKRCLPAVL 142

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLG   +E  +      +    ++  I+SHLA ADD  S  N  QL     + 
Sbjct: 143 QFDTGMSRLGFPEEERSELAAALGDGSNVEILFIMSHLASADDMESDQNGEQLAEMARIA 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             + G + S A+S G+ LG  YH  L RPGI+LYGG      ++PM+ VV+ +  ++  R
Sbjct: 203 DEFPGFDISFANSGGVFLGDAYHGVLARPGIALYGGAPHAGGNNPMEPVVSLDVAVVQTR 262

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YGG     R   +A  A GYADG P +L              G  +     
Sbjct: 263 TVPAGAKVGYGGAHVTQRKMRLATIAAGYADGLPRSLGDR-----------GAVYYNDIR 311

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+++MD    D++      + +G  +++ G +  L+ +A  +GT +Y++L  +G R
Sbjct: 312 LPIVGRVSMDSATVDVSALPEGALTLGSLVEVLGSNQTLEHIARDAGTISYEILTGLGDR 371

Query: 365 YAKFY 369
           Y K Y
Sbjct: 372 YDKQY 376


>gi|309378149|emb|CBX23217.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 352

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|261392126|emb|CAX49626.1| alanine racemase [Neisseria meningitidis 8013]
          Length = 352

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYQILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL     +     +  
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALL-IRHWKKTVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGGDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|78058366|gb|ABB17545.1| VanTG2 [Enterococcus faecalis]
          Length = 712

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 175/374 (46%), Gaps = 31/374 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL  L++N   +  A+       AVVK  AYG G  +IA  L   GV+ F V +++E
Sbjct: 347 LEIDLNNLEHNVKVLKRAMPQKCELMAVVKAEAYGHGLYEIATHLNKIGVKAFAVATIDE 406

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+KLR Y     I +L    P + K +   +L   +       +   L   G      ++
Sbjct: 407 GIKLRQYGVLGEILILGYTAPARAKELRKYDLTQTLID---YKYALLLDKQGYDVMTHIK 463

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLERFRT 184
           VDTG +RLG   ++ ++     F+ K  ++S I +HL  A   D+      +VQ+E F  
Sbjct: 464 VDTGMHRLGFDAKD-IEKISAVFSMKHIKVSGIYTHLCAADSVDEKDIFFTNVQIESFYN 522

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTV 235
           L++  K       +  + SS G+L  P       R G+SLYG     N        ++ V
Sbjct: 523 LLNQLKEKGITIPKIHIQSSYGLLNYPELKCDYVRVGVSLYGVLSSPNDRTKLHLDLRPV 582

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++R+IL+R+   GE V Y       RDSLIA+  +GYADGYP  LS           
Sbjct: 583 LSLKSRVILLREIKKGESVGYSRSFVANRDSLIALLPVGYADGYPRNLS----------C 632

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 I G+  P++GKI MD    D+TD  +++ G    + G D    I    VA ++ 
Sbjct: 633 GKSYVLINGHQAPVVGKICMDQLAVDVTDIPNVKTGSIATLIGKDGKEEITAPMVAESAE 692

Query: 352 TTNYDLLVRIGTRY 365
           +   +LL R+G R 
Sbjct: 693 SITNELLSRMGHRL 706


>gi|322373681|ref|ZP_08048217.1| alanine racemase [Streptococcus sp. C150]
 gi|321278723|gb|EFX55792.1| alanine racemase [Streptococcus sp. C150]
          Length = 367

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 154/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     K+DL+A+  N   + +      +T AVVK NAYG G   +A  +    V  F V
Sbjct: 6   HRPTLAKVDLSAISENIEQVVSHIPKKVKTFAVVKANAYGHGAVAVAKQVSE-RVDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR    +  I +L  + P +  +    N+   ++S+  L             
Sbjct: 65  SNLDEALELRQAGLEQPILILGVVLPDEVPLAIQENITLTVASLEWLEMTKNQGLDLTGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+G+  Q   D            +  I +H A AD+        QL  F
Sbjct: 125 TCHIKVDSGMGRIGVRSQGDADSLIAGLKTLGADVEGIFTHFATADEADDSKFKRQLAFF 184

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             L+ +          ++S+  +      F   R G+ +YG       +N  + ++  ++
Sbjct: 185 TNLVENLADRPRLVHASNSATSIWHAETVFNAVRLGVVIYGLNPSGSALNLPYKIRPALS 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E  ++ ++   AG+ V YG     T D +I    IGYADG+   L G            
Sbjct: 245 LETALVHVKTLPAGQDVGYGATYTTTTDEVIGTIPIGYADGWTRDLQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G   PI+G+++MD     +     +  G  + + G +    I   +VA   GT 
Sbjct: 294 -HVIVDGQFCPIVGRVSMDQITIRLPKVYPL--GTPVTLIGENGRASITATEVAEKRGTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRVPRSY 366


>gi|317968847|ref|ZP_07970237.1| alanine racemase [Synechococcus sp. CB0205]
          Length = 405

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 109/381 (28%), Positives = 168/381 (44%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   ++ID  A++ N  ++   L       AVVK + YG G   +A +    G   F V
Sbjct: 25  RQRAWVEIDEAAIQANAEALRRSLQPGCALMAVVKADGYGHGAVPVARSAAAGGASCFGV 84

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
            +++EGV+LR       + VL  + HP + +      L+P +S + +      L S  G 
Sbjct: 85  ATLQEGVELRQAGLDQPVLVLGNLSHPDELRACLHWQLMPTLSGMREALLCQNLASGSGR 144

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNSV 177
                L++DTG +RLG   +E           +  QL+ + SHLA AD P      + + 
Sbjct: 145 QLAVHLKLDTGMSRLGAPWEEGPRLVQAIAGLESLQLAGVYSHLAGADAPGNGLDALTAT 204

Query: 178 QLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSH 230
           Q +RF +++              LA+S+G L     H+ L R G++LYG   +D +    
Sbjct: 205 QQQRFDSVLTGLQQQQLPSGCRHLANSAGTLRSRQLHYDLVRVGLALYGQRPSDHLGSGL 264

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +Q  +   AR+ LIR+  AG  VSYG +    R S +AV  IGYADG P  LS      
Sbjct: 265 DLQPAMHVRARVSLIREVPAGVGVSYGHRFITQRPSRLAVVGIGYADGVPRLLSNQL--- 321

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   +    G  VP LG ITMD  + D TD   +E G  + + G +    I     
Sbjct: 322 --------EVLFGGQRVPQLGAITMDQLVLDATDVPELEAGSVVTLLGEEAGERIDPTAW 373

Query: 347 ALASGTTNYDLLVRIGTRYAK 367
           +   GT  +++L     R  +
Sbjct: 374 SDPIGTIPWEILCGFKHRLPR 394


>gi|34499248|ref|NP_903463.1| alanine racemase [Chromobacterium violaceum ATCC 12472]
 gi|34105099|gb|AAQ61455.1| alanine racemase [Chromobacterium violaceum ATCC 12472]
          Length = 357

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 103/368 (27%), Positives = 172/368 (46%), Gaps = 20/368 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +RL+I L A+++N+      S      AV+K NAYG G    A AL +     F + +
Sbjct: 3   RPIRLEISLPAIRHNFLFTRQHSQARSLFAVIKANAYGHGLLDTAKALADQ-ADGFALLN 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +E+ V+LR       I +L G     E     D  L   + S  Q+ + +K  S      
Sbjct: 62  IEDAVRLREAGFDHPISLLEGPFDAAEAAAMADYRLGGAVHSQQQMDWLAK-GSADRPID 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG   QEA             +L+ +++H A AD+   +  + Q  RF 
Sbjct: 121 VWLKINSGMNRLGFRPQEAAAAQARLQALPGARLTAVMTHFATADE--DYGVAEQWARF- 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
             ++   G++   A+S+ +L  P+ H  + RPGI LYG +   N++     +   +T  A
Sbjct: 178 EPVAVASGLKVCAANSAALLRHPHTHGDIGRPGIVLYGASPFENETGAGLGLMPAMTLSA 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II +++   G+ V YG +    R   I V A GYADGYP   +            G   
Sbjct: 238 DIIAVQQLQPGDAVGYGRRFIADRAMRIGVVACGYADGYPRVAAN-----------GAPA 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    + G+++MDM   DI+      VG  ++++GP+  ++ VA A+GT +Y+L+  
Sbjct: 287 AVDGQPCRLAGRVSMDMLTVDISHLPQAGVGSRVELWGPNAPIEKVAAAAGTISYELMSA 346

Query: 361 IGTRYAKF 368
           +  R  + 
Sbjct: 347 VMPRVPRV 354


>gi|19551822|ref|NP_599824.1| alanine racemase [Corynebacterium glutamicum ATCC 13032]
 gi|62389477|ref|YP_224879.1| alanine racemase [Corynebacterium glutamicum ATCC 13032]
 gi|23813648|sp|Q8RSU9|ALR_CORGL RecName: Full=Alanine racemase
 gi|158428171|pdb|2DY3|A Chain A, Crystal Structure Of Alanine Racemase From Corynebacterium
           Glutamicum
 gi|158428172|pdb|2DY3|B Chain B, Crystal Structure Of Alanine Racemase From Corynebacterium
           Glutamicum
 gi|158428173|pdb|2DY3|C Chain C, Crystal Structure Of Alanine Racemase From Corynebacterium
           Glutamicum
 gi|158428174|pdb|2DY3|D Chain D, Crystal Structure Of Alanine Racemase From Corynebacterium
           Glutamicum
 gi|18699004|gb|AAL77207.1| alanine racemase [Corynebacterium glutamicum]
 gi|21323353|dbj|BAB97981.1| Alanine racemase [Corynebacterium glutamicum ATCC 13032]
 gi|41324811|emb|CAF19293.1| ALANINE RACEMASE [Corynebacterium glutamicum ATCC 13032]
          Length = 361

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 95/372 (25%), Positives = 163/372 (43%), Gaps = 20/372 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L  KIDL A+ +N   +  ++G A+  AVVK NAY  G EK+AP +   G   F V ++
Sbjct: 3   LLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATL 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            E ++LR       +           +   D N+   + S         + +       +
Sbjct: 63  AEAMQLRDIGISQEVLCWIWTPEQDFRAAIDRNIDLAVISPAHAKAL--IETDAEHIRVS 120

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++D+G +R G+  QE              +++ + +HLACAD+P +     Q+  FR  
Sbjct: 121 IKIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLACADEPENPETDRQIIAFRRA 180

Query: 186 ISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           ++  +  G+E     + +S   L   + H ++ RPG++ YG        H ++  +T EA
Sbjct: 181 LALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVAGLEHGLKPAMTWEA 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++ ++++  AG+  SYG   +      +AV   GYADG P    G  S            
Sbjct: 241 KVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQGKFS-----------V 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-IKLDDVALASGTTNYDLL 358
            I G   P +G++ MD  +  + D+   +E G    IFG +     D A    T NY+++
Sbjct: 290 TIDGLDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERLDTINYEVV 349

Query: 359 VRIGTRYAKFYT 370
            R   R  + Y 
Sbjct: 350 CRPTGRTVRAYV 361


>gi|224477060|ref|YP_002634666.1| alanine racemase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254802386|sp|B9DMI9|ALR_STACT RecName: Full=Alanine racemase
 gi|222421667|emb|CAL28481.1| alanine racemase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 384

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 92/382 (24%), Positives = 157/382 (41%), Gaps = 28/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +++F R   LK+DL A+  N+  +  L  N     V+K NAYG+G   +   L   G + 
Sbjct: 2   ADKFYRPTYLKVDLEAILKNYQVLGKLQPNKTVMPVIKANAYGMGSVNVGHYLKKHGAEF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V +++E ++LR++    +I +L  + P          +   + S   L    K +   
Sbjct: 62  FAVATLDEAIELRMHGIDTKILILGVVMPKDINKAIQHRVALTVPSYAWLNEAIKYLDED 121

Query: 120 --VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                   +++DTG  RLG+ S ++         + +      + +H A AD+  S    
Sbjct: 122 LEKDLWLHVKIDTGMGRLGVKSAEDYQKTVALIQSHEHLIFEGVFTHFAQADE-DSPHTK 180

Query: 177 VQLERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHP 231
            Q E F   +            +S+G +L       + R GISLYG       +   +  
Sbjct: 181 EQYEIFENWVDTIPHPSYVHAQNSAGTILFDAPICNMVRTGISLYGYYPSEYVEEQTNAE 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +         I+ I+    G+ VSYG      +   IA+  +GYADG+P  + G +    
Sbjct: 241 LYPSAEWITEIVDIKYLNIGDTVSYGSTYTAEKSEKIAILPVGYADGFPRMMQGTN---- 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     + G    I+G++ MD  M  + ++  I VGD + +   +      L   A
Sbjct: 297 --------VEVNGQQCTIIGRVCMDQMMIALPENEDINVGDKVTLLNREHSGPQSLLSHA 348

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L RIG R  + Y
Sbjct: 349 KQQQTINYEVLCRIGRRVPRIY 370


>gi|295090179|emb|CBK76286.1| alanine racemase [Clostridium cf. saccharolyticum K10]
          Length = 710

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 106/382 (27%), Positives = 167/382 (43%), Gaps = 31/382 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                +++    L  N  +++ L     +    VK NAYG G   IA AL   G++ F V
Sbjct: 341 QARAWIELSKQQLYQNVDALSQLLPPGCQLMPAVKANAYGHGAVLIAKALQEKGIRAFCV 400

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            SV EGV+LR       I +L   HP    +++   L   +   P   +   L +C    
Sbjct: 401 ASVTEGVELRKNGITGTILILGYTHPDSFPLLWKYRLTQTVVDYP---YAQSLNACRKKV 457

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQL 179
              L++DTG +RLG+   + ++     F      +  I +HL  +D            Q 
Sbjct: 458 QVHLKIDTGMHRLGIR-SDHIEEISRMFQMDNLLVDGIYTHLCVSDSMTAADREFTYQQA 516

Query: 180 ERFRTLISHY--KGI---EASLASSSGILLGPNYHFQLTRPGISLYGG----TDKINKSH 230
             F TL+     +GI      L++S G++  P +     R GI+LYG      D+ N S 
Sbjct: 517 NAFYTLLEKLSERGISCPNIHLSASYGLIHYPEFPSNYARIGIALYGMLSSRQDEENCSI 576

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P+  V++ +AR+  +R    GE   YG +     +  IAV +IGYADG P +LS      
Sbjct: 577 PLFPVLSVKARVSSVRDLYKGEGAGYGLRYVAKENRQIAVLSIGYADGIPRSLSNGH--- 633

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                  G+  I G   PI+G I MD  + D+TD   ++ GD   + G     +I   D+
Sbjct: 634 -------GRVLINGQFAPIIGNICMDQMLVDVTDIKEVKQGDIAVLIGKSGDLEITAYDL 686

Query: 347 ALASGTTNYDLLVRIGTRYAKF 368
           A  + +   ++L R+G R  + 
Sbjct: 687 AEQTESITNEILSRLGARLERI 708


>gi|239999360|ref|ZP_04719284.1| Alr [Neisseria gonorrhoeae 35/02]
 gi|317164616|gb|ADV08157.1| hypothetical protein NGTW08_1189 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 352

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGNDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|146319466|ref|YP_001199178.1| alanine racemase [Streptococcus suis 05ZYH33]
 gi|146321663|ref|YP_001201374.1| alanine racemase [Streptococcus suis 98HAH33]
 gi|253752482|ref|YP_003025623.1| alanine racemase [Streptococcus suis SC84]
 gi|253754308|ref|YP_003027449.1| alanine racemase [Streptococcus suis P1/7]
 gi|253756242|ref|YP_003029382.1| alanine racemase [Streptococcus suis BM407]
 gi|166969434|sp|A4W3N5|ALR_STRS2 RecName: Full=Alanine racemase
 gi|166969435|sp|A4VXD9|ALR_STRSY RecName: Full=Alanine racemase
 gi|145690272|gb|ABP90778.1| Alanine racemase [Streptococcus suis 05ZYH33]
 gi|145692469|gb|ABP92974.1| Alanine racemase [Streptococcus suis 98HAH33]
 gi|251816771|emb|CAZ52414.1| alanine racemase [Streptococcus suis SC84]
 gi|251818706|emb|CAZ56542.1| alanine racemase [Streptococcus suis BM407]
 gi|251820554|emb|CAR47310.1| alanine racemase [Streptococcus suis P1/7]
 gi|319758890|gb|ADV70832.1| alanine racemase [Streptococcus suis JS14]
          Length = 367

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 153/379 (40%), Gaps = 29/379 (7%)

Query: 3   SNEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   +++++L A+  N+   M  L       AVVK NAYG G   +A  L +     F 
Sbjct: 5   EHRPTQIRVNLDAIAENFEQVMTNLPPKTEAFAVVKANAYGHGAVAVAKKLSSQ-AAGFC 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V++++E ++LR    +  I +L  +      +    N+   ++S+  L     L +    
Sbjct: 64  VSNLDEALELRKAGIEHPILILGVVPVRFLPVAHQLNISVTVASLDWLQDAKDLEADLSG 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ--LSLIISHLACADDPSSHVNSVQL 179
               L++DTG  R+G    +  D        +  +  +  + +H A AD+        QL
Sbjct: 124 LTVHLKLDTGMGRIGFR--KIADLLQAIAILEELEYDIEGVYTHFATADEVEQAHFESQL 181

Query: 180 ERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQT 234
             F+  +            ++S+  +   +  F L R G  LYG       +     +Q 
Sbjct: 182 SVFKEFLDVLPITPRWIHASNSATSIWHADTVFNLVRLGNILYGLNPSGRVLELPFGVQP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  + I+ +++  AG  + YG     T    IA   IGYADG   +L GL        
Sbjct: 242 ALSLVSEIVHVKQVEAGTTIGYGATYHSTDSEWIATVPIGYADGLVRSLQGLS------- 294

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G+I+MD     +  +  +  G  + + G D    I + + A   
Sbjct: 295 -----VLVDGQACEIVGRISMDQITIRLPRAYPL--GQKVTLIGQDGDKTISVQEWADRI 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++  +  R  + +
Sbjct: 348 GTINYEVVCLLTDRLPRIF 366


>gi|33355854|gb|AAQ16274.1| serine racemase [Enterococcus faecalis]
 gi|77380201|gb|ABA71733.1| VanTG [Enterococcus faecalis]
          Length = 712

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 110/374 (29%), Positives = 174/374 (46%), Gaps = 31/374 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L  L++N +++  A+S      AVVK  AYG G  ++   L   GV  F V +++E
Sbjct: 347 LEINLNNLEHNVNTLQKAMSPKCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDE 406

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G++LR Y   + I +L    P + K +    L   +         +K    G      ++
Sbjct: 407 GIRLRKYGISSEILILGYTSPSRAKELCKYELTQTLIDYRYSLLLNK---QGYDIKAHIK 463

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERFRT 184
           +DTG +RLG S ++  D    +F+ K  +++ I +HL  AD   +      + Q+  F  
Sbjct: 464 IDTGMHRLGFSTED-KDKILAAFSLKHIKVAGIFTHLCAADSLEENDVAFTNKQIGSFYK 522

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTV 235
           ++   K       +  + SS G+L  P       R G++LYG     N        ++ V
Sbjct: 523 VLDWLKSSGLNIPKVHIQSSYGLLNYPELECDYIRVGVALYGVLSSTNDKTKLELDLRPV 582

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ +A+++LIRK   GE V Y      TRDSLIA+  IGYADG+P  LS           
Sbjct: 583 LSLKAKVVLIRKIKQGESVGYSRAFTATRDSLIAILPIGYADGFPRNLS----------C 632

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 I G   PI+GKI MD    D+TD  +++ G    + G D    I    VA ++ 
Sbjct: 633 GNSYVLIGGRQAPIVGKICMDQLAVDVTDIPNVKTGSIATLIGKDGKEEITAPMVAESAE 692

Query: 352 TTNYDLLVRIGTRY 365
           +   +LL R+G R 
Sbjct: 693 SITNELLSRMGHRL 706


>gi|50843722|ref|YP_056949.1| alanine racemase 1 [Propionibacterium acnes KPA171202]
 gi|289424661|ref|ZP_06426444.1| alanine racemase [Propionibacterium acnes SK187]
 gi|289427468|ref|ZP_06429181.1| alanine racemase [Propionibacterium acnes J165]
 gi|295131811|ref|YP_003582474.1| alanine racemase [Propionibacterium acnes SK137]
 gi|81826355|sp|Q6A5H2|ALR_PROAC RecName: Full=Alanine racemase
 gi|50841324|gb|AAT83991.1| alanine racemase 1 [Propionibacterium acnes KPA171202]
 gi|289155358|gb|EFD04040.1| alanine racemase [Propionibacterium acnes SK187]
 gi|289159398|gb|EFD07589.1| alanine racemase [Propionibacterium acnes J165]
 gi|291376898|gb|ADE00753.1| alanine racemase [Propionibacterium acnes SK137]
 gi|313806771|gb|EFS45269.1| alanine racemase [Propionibacterium acnes HL087PA2]
 gi|313812020|gb|EFS49734.1| alanine racemase [Propionibacterium acnes HL083PA1]
 gi|313815645|gb|EFS53359.1| alanine racemase [Propionibacterium acnes HL059PA1]
 gi|313821611|gb|EFS59325.1| alanine racemase [Propionibacterium acnes HL036PA1]
 gi|313824443|gb|EFS62157.1| alanine racemase [Propionibacterium acnes HL036PA2]
 gi|313826790|gb|EFS64504.1| alanine racemase [Propionibacterium acnes HL063PA1]
 gi|313829078|gb|EFS66792.1| alanine racemase [Propionibacterium acnes HL063PA2]
 gi|313832454|gb|EFS70168.1| alanine racemase [Propionibacterium acnes HL007PA1]
 gi|314916134|gb|EFS79965.1| alanine racemase [Propionibacterium acnes HL005PA4]
 gi|314917397|gb|EFS81228.1| alanine racemase [Propionibacterium acnes HL050PA1]
 gi|314921737|gb|EFS85568.1| alanine racemase [Propionibacterium acnes HL050PA3]
 gi|314926087|gb|EFS89918.1| alanine racemase [Propionibacterium acnes HL036PA3]
 gi|314930661|gb|EFS94492.1| alanine racemase [Propionibacterium acnes HL067PA1]
 gi|314955415|gb|EFS99820.1| alanine racemase [Propionibacterium acnes HL027PA1]
 gi|314959415|gb|EFT03517.1| alanine racemase [Propionibacterium acnes HL002PA1]
 gi|314961740|gb|EFT05841.1| alanine racemase [Propionibacterium acnes HL002PA2]
 gi|314975119|gb|EFT19214.1| alanine racemase [Propionibacterium acnes HL053PA1]
 gi|314977529|gb|EFT21624.1| alanine racemase [Propionibacterium acnes HL045PA1]
 gi|314979919|gb|EFT24013.1| alanine racemase [Propionibacterium acnes HL072PA2]
 gi|314986875|gb|EFT30967.1| alanine racemase [Propionibacterium acnes HL005PA2]
 gi|315086530|gb|EFT58506.1| alanine racemase [Propionibacterium acnes HL002PA3]
 gi|315087933|gb|EFT59909.1| alanine racemase [Propionibacterium acnes HL072PA1]
 gi|315096840|gb|EFT68816.1| alanine racemase [Propionibacterium acnes HL038PA1]
 gi|315102406|gb|EFT74382.1| alanine racemase [Propionibacterium acnes HL046PA1]
 gi|315109676|gb|EFT81652.1| alanine racemase [Propionibacterium acnes HL030PA2]
 gi|327333048|gb|EGE74780.1| alanine racemase [Propionibacterium acnes HL096PA2]
 gi|327334042|gb|EGE75757.1| alanine racemase [Propionibacterium acnes HL096PA3]
 gi|327444331|gb|EGE90985.1| alanine racemase [Propionibacterium acnes HL013PA2]
 gi|327446804|gb|EGE93458.1| alanine racemase [Propionibacterium acnes HL043PA2]
 gi|327448756|gb|EGE95410.1| alanine racemase [Propionibacterium acnes HL043PA1]
 gi|327455097|gb|EGF01752.1| alanine racemase [Propionibacterium acnes HL087PA3]
 gi|327456233|gb|EGF02888.1| alanine racemase [Propionibacterium acnes HL083PA2]
 gi|328755932|gb|EGF69548.1| alanine racemase [Propionibacterium acnes HL087PA1]
 gi|328757652|gb|EGF71268.1| alanine racemase [Propionibacterium acnes HL020PA1]
 gi|328759003|gb|EGF72619.1| alanine racemase [Propionibacterium acnes HL025PA2]
 gi|328759903|gb|EGF73492.1| alanine racemase [Propionibacterium acnes HL099PA1]
 gi|332676676|gb|AEE73492.1| alanine racemase [Propionibacterium acnes 266]
          Length = 375

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 149/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
 gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
          Length = 825

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 155/371 (41%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + +    +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 466 LEVNLNAVVKNLNHYRSFMKPQTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125
           GV LR     + I ++        K +FD +L P + S   L               P  
Sbjct: 526 GVTLRKNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLDALVKEAEKEGITGFPVH 584

Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG    ++  +      ++       + SH   +D       ++ Q E F 
Sbjct: 585 IKLDTGMHRLGFDPHKDIDELIRRLKHQNAIIPRSVFSHFVGSDCDDFDAFSAQQFELFT 644

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
              S  +      I   + +S+GI   P+    + R G+ LYG   + NK+     + T 
Sbjct: 645 FGASKLQSAFDHKILFHMDNSAGIEHFPDRQMDMCRLGLGLYGINPRNNKTINN--ISTL 702

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +     GE + Y  +  L RDS+I    IGYADG    LS             G
Sbjct: 703 KTTILQLHHLATGESIGYSRKTILERDSVIGAIPIGYADGLDRHLSNRH----------G 752

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++   GT  Y++L
Sbjct: 753 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDCVEIFGDHLPVTVLSDIIGTIPYEVL 811

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 812 TGISNRVKRVY 822


>gi|194099058|ref|YP_002002139.1| Alr [Neisseria gonorrhoeae NCCP11945]
 gi|240014543|ref|ZP_04721456.1| Alr [Neisseria gonorrhoeae DGI18]
 gi|240016989|ref|ZP_04723529.1| Alr [Neisseria gonorrhoeae FA6140]
 gi|240081431|ref|ZP_04725974.1| Alr [Neisseria gonorrhoeae FA19]
 gi|240116062|ref|ZP_04730124.1| Alr [Neisseria gonorrhoeae PID18]
 gi|240118348|ref|ZP_04732410.1| Alr [Neisseria gonorrhoeae PID1]
 gi|240121065|ref|ZP_04734027.1| Alr [Neisseria gonorrhoeae PID24-1]
 gi|240123896|ref|ZP_04736852.1| Alr [Neisseria gonorrhoeae PID332]
 gi|240128570|ref|ZP_04741231.1| Alr [Neisseria gonorrhoeae SK-93-1035]
 gi|260440124|ref|ZP_05793940.1| Alr [Neisseria gonorrhoeae DGI2]
 gi|268601728|ref|ZP_06135895.1| alanine racemase [Neisseria gonorrhoeae PID18]
 gi|268604061|ref|ZP_06138228.1| alanine racemase [Neisseria gonorrhoeae PID1]
 gi|268682520|ref|ZP_06149382.1| alanine racemase [Neisseria gonorrhoeae PID332]
 gi|268686962|ref|ZP_06153824.1| alanine racemase [Neisseria gonorrhoeae SK-93-1035]
 gi|193934348|gb|ACF30172.1| Alr [Neisseria gonorrhoeae NCCP11945]
 gi|268585859|gb|EEZ50535.1| alanine racemase [Neisseria gonorrhoeae PID18]
 gi|268588192|gb|EEZ52868.1| alanine racemase [Neisseria gonorrhoeae PID1]
 gi|268622804|gb|EEZ55204.1| alanine racemase [Neisseria gonorrhoeae PID332]
 gi|268627246|gb|EEZ59646.1| alanine racemase [Neisseria gonorrhoeae SK-93-1035]
          Length = 352

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|332365661|gb|EGJ43419.1| alanine racemase [Streptococcus sanguinis SK1059]
          Length = 369

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 144/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGTVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRLSMDQITVRLPQAYPL--GTLVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|317011147|gb|ADU84894.1| alanine racemase [Helicobacter pylori SouthAfrica7]
          Length = 377

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 95/382 (24%), Positives = 177/382 (46%), Gaps = 32/382 (8%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D ++L++N++++  A+  +    AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVDTSSLRHNFNAVKNAIPKDTHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
            ++LR + P+  I +L        +++ D +L  +I S+ Q   +S++           L
Sbjct: 68  ALELRFHFPKTPILILGYSPNSNAQMLVDNHLSAMIFSLEQAEIFSQIALKSKKRLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSVEIIKKIRALKGLEVEGIFTHLSNADANIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTD--KINKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG     ++ +S P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNNNENRFLNLYRPGIMLYGFYPSNEMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + VV+ +A+I+ I++   GE V YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVVSLKAQIVQIKRVKKGEFVGYGKHFYTNEETLVGVLALGYADGLARALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348
                 +  I   + P++ K+ MD     + D +  + GD + +FG         +++A 
Sbjct: 303 ------QVVINNQLAPLIAKVCMDQCFIKL-DGIEAKEGDEVILFGDKSTRANDANEIAT 355

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
              T  Y+++  +  R  + Y 
Sbjct: 356 LLNTIPYEVISTLSKRLERVYA 377


>gi|309808567|ref|ZP_07702463.1| alanine racemase [Lactobacillus iners LactinV 01V1-a]
 gi|312874851|ref|ZP_07734870.1| alanine racemase [Lactobacillus iners LEAF 2053A-b]
 gi|325913186|ref|ZP_08175556.1| alanine racemase [Lactobacillus iners UPII 60-B]
 gi|308168195|gb|EFO70317.1| alanine racemase [Lactobacillus iners LactinV 01V1-a]
 gi|311089596|gb|EFQ48021.1| alanine racemase [Lactobacillus iners LEAF 2053A-b]
 gi|325477607|gb|EGC80749.1| alanine racemase [Lactobacillus iners UPII 60-B]
          Length = 375

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 152/381 (39%), Gaps = 30/381 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V
Sbjct: 6   HRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E ++LR    +  I VL    P    +  + ++   +  +  L   S  +S G   
Sbjct: 66  AILDEAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKQTSTFLS-GTKL 124

Query: 123 PYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +D+G  R+G +  +A L       +     +  + +H + AD         Q+++
Sbjct: 125 KIHLAIDSGMGRIGFNEDDAFLKANDYLLSHPEYDVEGMFTHFSTADCHDLEYFDSQVKK 184

Query: 182 FRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KINKSHPM 232
           F         K       +S+  +        L R GI++YG          +I     +
Sbjct: 185 FDHFKKMLRIKPRYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQPKFTL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G       
Sbjct: 245 QPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF------ 298

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VAL 348
                 K  +     PI+G++ MD  M  + + + +  G  +++   D K  +    VA 
Sbjct: 299 ------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNIKAVAD 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            + T +Y++   +  R  + Y
Sbjct: 351 YANTIHYEIACLLSDRVPREY 371


>gi|258543551|ref|YP_003188984.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634629|dbj|BAI00605.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637685|dbj|BAI03654.1| alanine racemase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640739|dbj|BAI06701.1| alanine racemase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643794|dbj|BAI09749.1| alanine racemase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646849|dbj|BAI12797.1| alanine racemase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649902|dbj|BAI15843.1| alanine racemase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652892|dbj|BAI18826.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655946|dbj|BAI21873.1| alanine racemase [Acetobacter pasteurianus IFO 3283-12]
          Length = 381

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 187/366 (51%), Gaps = 15/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ++L+A+  N+  + +  G    AAVVK +AYGLG  ++AP L  AG + FFV  V+EG
Sbjct: 24  LTVNLSAIAENYRYLKSRLGKTACAAVVKADAYGLGVAQVAPVLEKAGAEHFFVAHVDEG 83

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           + LR +  P   + VL+G  P   ++    NL PV++S+ Q+     L +        A+
Sbjct: 84  LALRPFLSPHTSVTVLHGPRPDAAEVCVRNNLRPVLNSLEQVAVLRDLAAKMDKPLDVAI 143

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG +R GLS  +      +    K   +SL++SHLACAD P +  N++Q ERF    
Sbjct: 144 QLDTGMSRFGLSEADIHKLVASPELLKGLFVSLVMSHLACADTPQNPANTMQRERFEAYA 203

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                   SL++SSGI LGP +HF L RPG +LYG   +    +P++ VV  +A I+ IR
Sbjct: 204 RILPQAALSLSASSGIFLGPQFHFDLVRPGAALYGVAPQNEGDNPLKPVVGLQAHILQIR 263

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G+ V YG   +      +A  A GY               + +    G  + KGY 
Sbjct: 264 HLSKGDRVGYGLTWQAHGPCRVATIATGY-----------ADGFARAGAAAGCAWYKGYR 312

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PILG+I+MD    D++      +E    +++      +D VA A GT  Y++L  +G R
Sbjct: 313 LPILGRISMDSMTVDLSAVPEGLLEEDSMVELLNESYGVDAVAKAEGTIGYEVLTSLGRR 372

Query: 365 YAKFYT 370
           Y + Y 
Sbjct: 373 YHRVYA 378


>gi|113953241|ref|YP_729636.1| alanine racemase [Synechococcus sp. CC9311]
 gi|113880592|gb|ABI45550.1| alanine racemase [Synechococcus sp. CC9311]
          Length = 393

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 172/381 (45%), Gaps = 26/381 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           +  +   L++  +A++ N  S+   L  +    AVVK + YG G E +A A    G   F
Sbjct: 21  NPRQRAWLEVSDSAIEANARSLKRHLGPHCDLMAVVKADGYGHGAETVAKASVRGGATSF 80

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118
            V +++EG+ LR       + VL  +  P   +      L+P +SS+ +      L    
Sbjct: 81  GVATLQEGIDLRNAGLDQPVLVLGHLSQPDDLRACLQWRLMPTLSSMREALLCQNLADSS 140

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA----DDPSSHV 174
           G   P  L+VDTG  RLG   ++     H         LS I SHLA A    D P++ V
Sbjct: 141 GRRFPVQLKVDTGMTRLGCDWKDGKRLAHAIQQLDQLSLSGIYSHLALADGERDGPAAQV 200

Query: 175 NSVQLERFRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSH 230
             +Q +RF ++    +   ++  LA+S+G L     H  L R G++LYG      ++   
Sbjct: 201 TKLQEDRFESITRELRSPTLKRHLANSAGTLRDTGLHHDLVRVGLALYGHCPSEHLDGIL 260

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++ +A++ LIR+  AG  VSYG +    R S +AV +IGYADG    LSG     
Sbjct: 261 NLEPAMSVKAKVSLIREVPAGVGVSYGHRFVTQRPSRLAVVSIGYADGVSRCLSGRI--- 317

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                        G  +P +G ITMD  + D T+   +E GD + + G D    I     
Sbjct: 318 --------HALHAGQTLPQVGAITMDQLILDATEHRGLESGDVVTLLGRDGEETISPRTW 369

Query: 347 ALASGTTNYDLLVRIGTRYAK 367
           A  + +  +++L     R  +
Sbjct: 370 AQLADSIPWEVLCSFKHRLPR 390


>gi|148360608|ref|YP_001251815.1| hypothetical protein LPC_2554 [Legionella pneumophila str. Corby]
 gi|226711052|sp|A5IGG9|ALR_LEGPC RecName: Full=Alanine racemase
 gi|148282381|gb|ABQ56469.1| hypothetical protein LPC_2554 [Legionella pneumophila str. Corby]
          Length = 357

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 175/368 (47%), Gaps = 21/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   RL I+ +AL +N   +  L+   +  A+VK NAYG G  ++AP L +  ++ F V 
Sbjct: 2   SRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + +R    +    +  G+    E  +  + +   V+    QL +  K        
Sbjct: 61  CLEEALAIRALGVETPCILFQGVFSSDELSVAVENDFACVLHHAQQLEWLIK-TPLPYPI 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++V+TG +RLG  + E             + +   +++HLACAD+P    N  Q+  
Sbjct: 120 KVWVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKSIGLMTHLACADEPHRPENQQQISL 179

Query: 182 FRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237
           F+ +     G    S+A+S+ I+  P+    + RPGI LYG +   N+      +  V+ 
Sbjct: 180 FQEI--SIPGFRQRSIANSAAIISFPDSQADVVRPGIMLYGVSPFANQNAHDLGLIPVMR 237

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I  I    +   V YGG  K  + S I V A GY DGYP  +S             
Sbjct: 238 FMSAISAIHDNPSFAQVGYGGTWKSDKPSRIGVVAAGYGDGYPRHIS-----------EK 286

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              +++G  V I+G+++MDM   D+T+   +E+GD ++++G  + ++ +A ++GT  Y+L
Sbjct: 287 TPVWVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGTVGYEL 346

Query: 358 LVRIGTRY 365
           L +I  R 
Sbjct: 347 LCQISERV 354


>gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
 gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
          Length = 792

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + +    +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 433 LEVNLNAVVENLNYYRSFMKPETKMVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 492

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     A I ++        K +FD +L P + S   L    K          P  
Sbjct: 493 GVTLRKAGITANIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLDALIKAARKEGITGWPVH 551

Query: 126 LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG   ++ +D       +++      + SH   +D     + +++Q +RF 
Sbjct: 552 IKLDTGMHRLGFDPEQDMDELIDRLTHQQAVIPRSVFSHFVGSDSDDFDNFSTLQFKRFE 611

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P+    + R G+ LYG   + N+   + TV T 
Sbjct: 612 MGSQKLQAAFSHKILRHIDNSAGIEHFPDRQLDMCRLGLGLYGIDSRDNR--ILHTVSTL 669

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ + +    E V Y  + KLTRDS+IA   IGYADG    L               
Sbjct: 670 KTTILQMHQVPKSETVGYSRKGKLTRDSVIAAIPIGYADGLNRRLGNRHC---------- 719

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ + D+TD    + GD ++IFG  + +  ++    T  Y++L
Sbjct: 720 YCLVNGQKAEYVGNICMDVALIDVTDIP-CQEGDQVEIFGEHLPVTVLSDVLETIPYEVL 778

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 779 TGISNRVKRVY 789


>gi|239623709|ref|ZP_04666740.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521740|gb|EEQ61606.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 396

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 167/385 (43%), Gaps = 28/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M     +   I L A+  N  +M A L  +     VVK + YG G   +A    +  V  
Sbjct: 1   MKPYSRVYAAIHLDAVAANMEAMKANLPASTSMIGVVKTDGYGHGAVPVART-IDPYVDG 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
           + V SV+EG+ LR +  +  I VL   H  + + +   ++ P +    +    S + +  
Sbjct: 60  YAVASVDEGIILRRHGIRKMILVLGVTHESRFEDLVQYDIRPAMFRYGEAQKLSAVAAAM 119

Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      L VDTG NR+G+   QE+ D  +     +  ++  + +H A AD+       +
Sbjct: 120 GKKANIHLAVDTGMNRIGMKPDQESADMVYRINMLEGIRIEGMFTHFARADEADKTTYGL 179

Query: 178 QLERFRTLISHY--KGIE---ASLASSSGILLGPNYH-FQLTRPGISLYGGTDKIN---K 228
           Q  ++   +     +GI       ++S+GI+     +   + R GIS+YG          
Sbjct: 180 QFGKYNDFVEMLGSRGITIPIRHCSNSAGIVESLGANGLDMVRAGISIYGLYPSDEVGKD 239

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  +   +  ++ I  I+    G+ VSYGG     R   +A   +GY DGYP +LSG   
Sbjct: 240 AVKLTPAMELKSFITYIKTIEPGDAVSYGGTFVADRQMRVATIPVGYGDGYPRSLSGR-- 297

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G   I+G    ILG+I MD  M D+T        D + + G D    I ++
Sbjct: 298 ---------GSVLIRGQRARILGRICMDQFMVDVTGIAGAAEDDEVTLIGRDGDGFIAVE 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           ++A A G  +Y+++  IG R  + Y
Sbjct: 349 ELAGAGGGFHYEIICGIGKRVPRVY 373


>gi|260219804|emb|CBA26704.1| Alanine racemase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 364

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 151/374 (40%), Gaps = 29/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL++N       + +AR  AVVK NAYG G E+    L   G     +  
Sbjct: 3   RPIQATIHTQALRHNLEVCRRAAPDARIWAVVKANAYGHGIERAFEGLR--GADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R    +  I +L G+   ++ ++     L   +    Q+     +      H 
Sbjct: 61  LEEAQRVRNLGWRGPILLLEGVFEQRDLELCSRLGLWHTLHCQEQIDML-AIHKTNEPHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG   ++                  +++H + AD P     + Q+  F+
Sbjct: 120 VFLKVNSGMNRLGFQPEQVRSAWTRLNALPQVDEISLMTHFSDADGPKGI--AGQMAVFK 177

Query: 184 TLISHYKGIEASLASSSGILLG--PNYHFQLTRPGISLYGGTDKINKS----HPMQTVVT 237
                  G E ++++S+  L    P       R GI+ YG      +       +Q  +T
Sbjct: 178 QATDDLPG-ERTVSNSAATLRHSGPGLVSDWVRAGIATYGSAPDYPEHDIAHWGLQPTMT 236

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A+II  R   AG+ V YG      +   I V A GYADGYP                G
Sbjct: 237 LAAKIIATRALSAGDTVGYGSNFTADKPMRIGVVACGYADGYPR-----------ICPTG 285

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352
               I G    ++G+++MDM   D+       +G  + ++G       + +D++A  +GT
Sbjct: 286 TPVLINGVRSRVVGRVSMDMITVDLDPVPQAGMGSEVTLWGRAANGAVLPIDEIASTAGT 345

Query: 353 TNYDLLVRIGTRYA 366
             Y+L+  +  R  
Sbjct: 346 VGYELMCALAQRVP 359


>gi|167752890|ref|ZP_02425017.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
 gi|167659959|gb|EDS04089.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
          Length = 790

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 110/373 (29%), Positives = 168/373 (45%), Gaps = 24/373 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL A+ +N +     L    R  A+VK  +YG G  ++A  L + GV    V   +E
Sbjct: 429 LEVDLDAMIHNLNYFRARLRPGVRLVAMVKAASYGAGDFEVAQMLQHQGVNYLAVAFADE 488

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYA 125
           GV LR    +  I VL     G   ++    L P I +   L F+SK +      S+P  
Sbjct: 489 GVLLRERGIRMPIVVLNA-DEGSFDLMVAHRLEPEIYNFRSLAFFSKAVERVGEESYPIH 547

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRT 184
           +++DTG +RLG    E    T         +++ I SHL C+D P        Q+ RF  
Sbjct: 548 IKLDTGMHRLGFMEGELDMLTETLGETPSVKVATIFSHLNCSDMPQEDRYTREQIARFDR 607

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           +           +    A+S+ I   P   F + R G+ LYG   + N    ++ V T +
Sbjct: 608 MSGRLAAALPYPVLRHTANSAAIERFPEAQFDMCRLGLGLYGFGFEHNDE--LKPVSTLK 665

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RI+ ++   AGE V YG   KLTRDS+ A   +GYADG    L                
Sbjct: 666 SRIVQLKHLSAGEAVGYGRAGKLTRDSVTATVPMGYADGLDRHLGCGRWS---------- 715

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLDDVALASGTTNYDL 357
             + G   PI+G++ MD  M D+TD   +E GD + IF   P    +D+A    T  Y++
Sbjct: 716 MLVAGRPAPIVGRVCMDSCMIDVTDIPGVEEGDEVVIFSAVPGNTPEDMARVLDTIPYEV 775

Query: 358 LVRIGTRYAKFYT 370
           +  +  R  + Y+
Sbjct: 776 MTSVSGRVKRIYS 788


>gi|326406390|gb|ADZ63461.1| alanine racemase [Lactococcus lactis subsp. lactis CV56]
          Length = 367

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 155/381 (40%), Gaps = 27/381 (7%)

Query: 1   MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M +  +      +DL A++NN       +  NA     VK +AYG G  +++ A+ +  V
Sbjct: 1   MKTSPHRNTSAIVDLKAIRNNIEKFKKHIHPNAEIWPAVKADAYGHGSVEVSKAVSDL-V 59

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V++++E ++LR +     I VL GI      I    N+     S+  L    +  +
Sbjct: 60  GGFCVSNLDEAIELRNHLVTKPILVLSGIVQEDVDIAAALNISLTAPSLEWLKLVVQEEA 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                   + VD+G  R+G+   E  +      +K       I +H A AD         
Sbjct: 120 ELSDLKIHIGVDSGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADDTKFKD 179

Query: 178 QLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
           Q  RF  +++    K       +++  L        + R GIS+YG       +     +
Sbjct: 180 QQARFNKIMAGLSRKPKFVHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEI 239

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  + +  I+K  AGE V YG   + + ++ I    IGYADG+   + G       
Sbjct: 240 EPALSLVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF------ 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 K  + G    I+G++ MD  M  +  S  +  G  + + G D    I   DVA 
Sbjct: 294 ------KVLVNGEFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKTNEITTTDVAD 345

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY++L  +  R  + Y
Sbjct: 346 WRGTINYEVLCLLSDRIKRIY 366


>gi|309803757|ref|ZP_07697843.1| alanine racemase [Lactobacillus iners LactinV 11V1-d]
 gi|309804662|ref|ZP_07698727.1| alanine racemase [Lactobacillus iners LactinV 09V1-c]
 gi|312872507|ref|ZP_07732575.1| alanine racemase [Lactobacillus iners LEAF 2062A-h1]
 gi|312874316|ref|ZP_07734348.1| alanine racemase [Lactobacillus iners LEAF 2052A-d]
 gi|325912385|ref|ZP_08174780.1| alanine racemase [Lactobacillus iners UPII 143-D]
 gi|329920529|ref|ZP_08277261.1| alanine racemase [Lactobacillus iners SPIN 1401G]
 gi|308164166|gb|EFO66427.1| alanine racemase [Lactobacillus iners LactinV 11V1-d]
 gi|308166054|gb|EFO68272.1| alanine racemase [Lactobacillus iners LactinV 09V1-c]
 gi|311090189|gb|EFQ48601.1| alanine racemase [Lactobacillus iners LEAF 2052A-d]
 gi|311091869|gb|EFQ50245.1| alanine racemase [Lactobacillus iners LEAF 2062A-h1]
 gi|325475727|gb|EGC78898.1| alanine racemase [Lactobacillus iners UPII 143-D]
 gi|328936205|gb|EGG32658.1| alanine racemase [Lactobacillus iners SPIN 1401G]
          Length = 375

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 152/381 (39%), Gaps = 30/381 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V
Sbjct: 6   HRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             ++E ++LR    +  I VL    P    +  + ++   +  +  L   S  +S G   
Sbjct: 66  AILDEAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKKTSTFLS-GTKL 124

Query: 123 PYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +D+G  R+G +  +A L       +     +  + +H + AD         Q+++
Sbjct: 125 KIHLAIDSGMGRIGFNEDDAFLKANDYLLSHPEYDVEGMFTHFSTADCHDLEYFDSQVKK 184

Query: 182 FRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KINKSHPM 232
           F         K       +S+  +        L R GI++YG          +I     +
Sbjct: 185 FDHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQPKFTL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G       
Sbjct: 245 QPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF------ 298

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VAL 348
                 K  +     PI+G++ MD  M  + + + +  G  +++   D K  +    VA 
Sbjct: 299 ------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNIKAVAD 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            + T +Y++   +  R  + Y
Sbjct: 351 YANTIHYEIACLLSDRVPREY 371


>gi|322412634|gb|EFY03542.1| alanine racemase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 366

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 152/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S         +T AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENIASAQEHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + ++     +   ++S+  L             
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELELAITHQVTVTVASLEWLAMAKPEWPDLKGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++D+G  R+GL     +D           ++  I +H A AD+  +     QL  F
Sbjct: 125 KVHIKIDSGMGRIGLRSVTEVDNLIAGLKSMGTEVEGIFTHFATADEADTVKFEQQLTFF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
             L+            ++S+  L      F   R GI +YG      ++    P++    
Sbjct: 185 TNLVDQLADKPSLVHASNSATSLWHSETIFNAVRLGIVMYGLNPSGSELALPFPLKEAFN 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ +++   GE V YG   K      +    IGYADG+   + G            
Sbjct: 245 LESVLVHVKEIAPGETVGYGATYKAQTREYVGTVPIGYADGWTRDMQGFT---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               ++G    I+G+++MD     +  +  +  G  + + G D    I   D+A    T 
Sbjct: 295 --VLVEGQTCEIIGRVSMDQMTIRLPRAYPL--GTKVTLIGQDQEKVISATDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRIPRVY 366


>gi|223043945|ref|ZP_03613986.1| alanine racemase [Staphylococcus capitis SK14]
 gi|222442660|gb|EEE48764.1| alanine racemase [Staphylococcus capitis SK14]
          Length = 382

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 163/382 (42%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R   L ++L A+ NN+ + N L  N    +V+K N+YGLG  K+A  L   G   
Sbjct: 2   SEKFYRSTYLNVNLDAILNNYQTFNQLHHNKTVISVIKANSYGLGSVKVAHHLMEHGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL--MS 117
           F V +++E ++LR++   A++ VL  I            +   + S   L    +     
Sbjct: 62  FAVATLDEAIELRMHGIDAKLLVLGVIPTKDISKAIQHRVALTVPSKAWLKEAIRNIPEK 121

Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                    ++D+G  RLG+  ++E  D       K       + +H A AD+P   +N 
Sbjct: 122 NEKKLWLHAKIDSGMGRLGMKDVEEYKDVVDIINKKDDLVFEGVFTHFASADEPGDSMNE 181

Query: 177 VQLERFRTLISHYKGIEASLA-SSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231
            Q E F+ +++  +      + +S+  LL         R GISLYG         N    
Sbjct: 182 -QYEFFKDIVNQVEKPNYIHSQNSAASLLMDGQFCNAIRLGISLYGYYPSQYVRDNVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++        I+ ++    GE VSYG      ++  IA+  +GYADGY   + G      
Sbjct: 241 LRPSAQLVTEIVQVKSLKVGETVSYGRTFTADKEMKIAILPVGYADGYLRAMQG------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                     + G+   ++G++ MD T+  + D   +++GD + +    I     ++ +A
Sbjct: 295 ------AYVNVNGHQCEVVGRVCMDQTIVSVPD--DVKMGDKVILMDNHIDSPQSVESLA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L  +  R  + Y
Sbjct: 347 EKQHTINYEVLCNLSKRLPRIY 368


>gi|59801649|ref|YP_208361.1| hypothetical protein NGO1295 [Neisseria gonorrhoeae FA 1090]
 gi|81311173|sp|Q5F788|ALR_NEIG1 RecName: Full=Alanine racemase
 gi|59718544|gb|AAW89949.1| putative alanine racemase [Neisseria gonorrhoeae FA 1090]
          Length = 352

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYTSAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+I+MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|315641800|ref|ZP_07896804.1| alanine racemase [Enterococcus italicus DSM 15952]
 gi|315482475|gb|EFU73014.1| alanine racemase [Enterococcus italicus DSM 15952]
          Length = 370

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 150/377 (39%), Gaps = 26/377 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R+ I   A++ N  ++   LS +    AV+K N YG G  ++A      GV  F V 
Sbjct: 7   RPTRITIHTEAIRENLRTVQEHLSADQSLFAVIKANGYGHGAVQVAKIAEEEGVAGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSH 122
           +++EG++LR       +F+L  +      I+    L IPV S+          +      
Sbjct: 67  TIDEGIELREAGITLPVFILGLVDCAYLPIVSQYQLAIPVASTDWLKQAEQAYLKNPWDE 126

Query: 123 P--YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           P    L ++TG  R+G     E      +    +   L  + +H A AD   +     Q 
Sbjct: 127 PIAVHLAIETGMGRIGFIDSGEVKQAEVSLAQAEGFYLEGVFTHFATADQADATYWQEQK 186

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVV 236
            RF   I+  +       ++S   L       L R G+++YG     +   P       +
Sbjct: 187 ARFFETIAVLEAPRYIHVTNSATQLWHEPLGNLVRYGVAMYGLNPSSDALQPSYSLVPAL 246

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  ++++ +++  +   V YG   + T+D  I    IGYADGY   L G           
Sbjct: 247 SLTSQLVQVKQLPSESGVGYGHTYETTQDEWIGTVPIGYADGYVRKLQGF---------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
                + G    I+G++ MD  M  +     I VG  + + G D    I L D+A   GT
Sbjct: 297 --HVLVNGQFCEIVGRVCMDQLMIRLP--ADIPVGTTVTLIGTDGDKTISLQDIASYIGT 352

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y++   +  R  + Y
Sbjct: 353 IHYEVACLLSERLPREY 369


>gi|313893858|ref|ZP_07827424.1| alanine racemase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441422|gb|EFR59848.1| alanine racemase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 374

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 167/382 (43%), Gaps = 25/382 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           ++     L I+ + ++ N   +  +L   + + AV+K N YG G   +       G +  
Sbjct: 3   NTMRPTYLTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESL 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119
            V   EE V LR       I++L    P   +++ DTN IP +     L    K+     
Sbjct: 63  AVAIPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLDALDKVADNHD 122

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           +    A+ VDTG +R+G+  ++A++F     + +  ++    SH++ AD         Q 
Sbjct: 123 MIIRIAVAVDTGMHRIGIKPEDAVEFIKRVESYENLEVDGFFSHMSNADAADQTHAHSQA 182

Query: 180 ERFRTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--P 231
            +F  ++   K          SLA+S+G+L   +  F   RPGI  YG    ++  +   
Sbjct: 183 MKFHRMVDEIKAFRPNADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLG 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V++  + ++ ++   AGE + YG          IA   +GYADGYP +LS       
Sbjct: 243 LKPVLSFHSEVVHVQHVPAGEGIGYGSTYVTPEPMTIATIPVGYADGYPRSLSNR----- 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 G   I G   P++G+I MD  M  + D+++++ GD + + G      I   ++A
Sbjct: 298 ------GTVLIHGTRCPVVGRICMDQFMVAVPDTITVKPGDKVVLLGSQGHESISALEIA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             + T  Y++      R  + Y
Sbjct: 352 ALASTIPYEIFCGFSERVPRQY 373


>gi|259501954|ref|ZP_05744856.1| alanine racemase [Lactobacillus antri DSM 16041]
 gi|259170131|gb|EEW54626.1| alanine racemase [Lactobacillus antri DSM 16041]
          Length = 374

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 149/374 (39%), Gaps = 29/374 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L AL  N  +  A L  +++  AVVK NAYG G   +A A   AG     V  ++E +
Sbjct: 13  INLRALGENIQAQKAALPADSKILAVVKANAYGHGLVPVAQAALRAGATGMCVAILDEAL 72

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHPYAL 126
           ++R         VL      +  +  +  +   + S+  LT Y +              L
Sbjct: 73  EIRDSGLDVITLVLGITPVEEANVAAEAGVSLTVGSLDWLTKYHQFARQFNWKKPLKIHL 132

Query: 127 QVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            VDTG  R+G + + E              +   + +H A AD         Q   ++  
Sbjct: 133 AVDTGMGRIGFTNVAEFNQAVKILRRYPEFEFEGMFTHFATADSADHTYFDRQYALWQKF 192

Query: 186 ISHYKGIEA--SLASSS-GILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAE 239
           I+    +     +A+S+ G+           R G+S+YG       + +   +Q V T  
Sbjct: 193 IASLDELPPYTHMANSATGLWHRDQITANTIRMGLSMYGYNPSGTDLPEDLHLQPVGTLR 252

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + I  ++K  AGE VSYG       D  +A   IGYADGYP  ++G             K
Sbjct: 253 SSISFVKKLAAGEAVSYGATYTAKHDEWLATVPIGYADGYPRCMTGF------------K 300

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             + G   PI G++ MD  M  +     ++    + + G      I  +++A  + T NY
Sbjct: 301 VLVDGQYCPIAGRVCMDQMMVRLPKYYPVD--TPVVLMGRSGALTITAEEMAEQAQTINY 358

Query: 356 DLLVRIGTRYAKFY 369
           ++L     R  + Y
Sbjct: 359 EILTNFNNRIHRTY 372


>gi|123442531|ref|YP_001006508.1| alanine racemase, catabolic [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089492|emb|CAL12340.1| alanine racemase, catabolic [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 355

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 166/366 (45%), Gaps = 22/366 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   ++L+AL +N + + +  G A+  +VVK NAYG G  ++   L  A    F +  
Sbjct: 3   RPISATLNLSALHHNLNVVRSHVGTAKIWSVVKANAYGHGLARVWQGL--AATDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    Q  I +L G+   Q+ ++ D   L   + S  QL    K         
Sbjct: 61  LNEAILLREQGWQGPILLLEGVFQAQDLVLLDHYRLTTAVHSDWQLEVI-KTARLTAPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+ ++G NRLG  + +A      + +        ++SH A AD+P       Q  + +
Sbjct: 120 IYLKFNSGMNRLGFPIGQAEAVWQWANSLSNVGEITLMSHFANADNPIG--VDEQFAQIQ 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
               H        A+S+ IL  PN H+   RPGI LYG +   +        ++ V+   
Sbjct: 178 QASGHIPAARC-FANSAAILRNPNTHYDWVRPGIILYGASPSGDIADIAGLGLRPVMGLR 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   AG+ V YG + + T    I V A GYADGYP                G  
Sbjct: 237 SEIIALQSLSAGQSVGYGSRYRATGVQRIGVVACGYADGYPR-----------VAPTGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G I+MDM   D+T     ++G  ++I+G ++ +D+VA A+GT  Y+L+ 
Sbjct: 286 IMVDGILTHTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVPIDNVAQAAGTVGYELMC 345

Query: 360 RIGTRY 365
            + +R 
Sbjct: 346 ALASRV 351


>gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 833

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 151/370 (40%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +     L  + +   +VK +AYG G  +IA  L    V    V   +E
Sbjct: 475 LEVNLGAMIANLNYYRSRLRPDTKMVCMVKASAYGAGSYEIAKTLQEHHVDFLAVAVADE 534

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G +LR     A I ++        K +FD  L P + S   L    K        + P  
Sbjct: 535 GSELRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 593

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG + ++          +       + SH   +D          Q+E F  
Sbjct: 594 IKLDTGMHRLGFAAKDMPRLIERLKGQNAVIARSVFSHFVGSDAAQFDAFTRGQIEMFEA 653

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                +      I   + +S+GI   P   F + R GI LYG +   N       V T +
Sbjct: 654 ASMQLQEAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGVSPIDNSIINN--VSTLK 711

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ IR     + V Y  +  LTR+S IA   IGYADG    L                
Sbjct: 712 TTILQIRDVPQEDTVGYSRKGHLTRNSRIAALPIGYADGLNRHLGNGH----------AY 761

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   P +G I MD+ M D+TD    + GD ++IFG  + +  ++    T  Y++L 
Sbjct: 762 CLVNGQRAPYVGNICMDVCMIDVTDI-DCKEGDAVEIFGDHLPITVLSDILETIPYEVLT 820

Query: 360 RIGTRYAKFY 369
            I TR  + Y
Sbjct: 821 SISTRVKRIY 830


>gi|91786104|ref|YP_547056.1| alanine racemase [Polaromonas sp. JS666]
 gi|123165554|sp|Q12H34|ALR_POLSJ RecName: Full=Alanine racemase
 gi|91695329|gb|ABE42158.1| alanine racemase [Polaromonas sp. JS666]
          Length = 364

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 158/375 (42%), Gaps = 30/375 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL +N     + + +AR  AVVK NAYG G E +   L +     F +  
Sbjct: 3   RPILATIHRPALAHNLARARSAAPDARVWAVVKANAYGHGIEHVFDGLRS--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  +LR    +  I +L G    ++ ++    +L  VI    Q+   +      V H 
Sbjct: 61  LAEARRLRALDWRGPILLLEGCFEARDLELCSRLSLWHVIHCNEQIDMLAAH-KTQVPHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLGL  +                   +++H + AD P     + QL  F 
Sbjct: 120 VFLKMNSGMNRLGLRPERFRAAWTRLNALPQVDEISLMTHFSDADGPKGI--AAQLRAFD 177

Query: 184 TLISHYKGIEASLASSSGILLGPN---YHFQLTRPGISLYGGTDKINK----SHPMQTVV 236
            +     G E SL++S+G+L   +         RPGI +YG      +       +Q  +
Sbjct: 178 AVTHDLPG-ERSLSNSAGVLRHGDELAARSDWVRPGIVVYGSAPDFPEHSAADWGLQPTM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  +RII +++  AG+ V YG          I V A GYADGYP   S            
Sbjct: 237 TLSSRIIGVQELAAGDTVGYGSSFTADGPLRIGVVACGYADGYPRHCS-----------T 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    + G    ++G+++MDM   D+T      +G  + ++G       + +D+VA  +G
Sbjct: 286 GTPVLVNGVRTRMVGRVSMDMITVDLTPVPDAGMGAEVTLWGRSSGGAVLPIDEVAQTAG 345

Query: 352 TTNYDLLVRIGTRYA 366
           T  Y+L+  +  R  
Sbjct: 346 TVGYELMCAVAPRVP 360


>gi|325690295|gb|EGD32299.1| alanine racemase [Streptococcus sanguinis SK115]
          Length = 369

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 143/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I  L         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILALGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLTRF 185

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  +  ++
Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQAYPL--GTSVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|268318829|ref|YP_003292485.1| hypothetical protein FI9785_335 [Lactobacillus johnsonii FI9785]
 gi|262397204|emb|CAX66218.1| alr [Lactobacillus johnsonii FI9785]
          Length = 376

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 145/384 (37%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V
Sbjct: 6   HRPAVVKVNLGAIKRNLENEMEHLEPGQKMLAVVKANGYGHGAVEVARVADKVGAAGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I    N+   + ++  L    K L    + 
Sbjct: 66  AILDEALELRRADITKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKEAEKYLKDANLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L +D+G  R+G    E  DF        N     +  + +H A AD         Q
Sbjct: 126 LKIHLGIDSGMGRIGF--NEYADFIAANEFLENNDNFFIEGMFAHFASADSSDETYFKHQ 183

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-------S 229
            E+F  + S    K     + +++  +        L R GI +YG     N        +
Sbjct: 184 CEKFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPNSSDLKSN 243

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            P++  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G    
Sbjct: 244 IPLEPALSFESELTHVKTIHQGDGVGYGSTFIADEDTIIGTVPVGYADGFIRKFQGF--- 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDD 345
                    K  +     PI+G+I MD  M  +   + +  G  + I          +  
Sbjct: 301 ---------KVKVGDTYCPIVGRICMDQFMVKMPKKMPV--GTKVTIISSNPNDQNNIKV 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T +Y++   +  R  + Y
Sbjct: 350 AADYVDTIHYEVACLLNDRLPRVY 373


>gi|296268597|ref|YP_003651229.1| alanine racemase [Thermobispora bispora DSM 43833]
 gi|296091384|gb|ADG87336.1| alanine racemase [Thermobispora bispora DSM 43833]
          Length = 381

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 154/378 (40%), Gaps = 27/378 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            + ++DL A+++N   +   +G A   AVVK + YG G   +A     AG        V 
Sbjct: 12  AQARVDLAAVRHNVSLLAEHAGGAELMAVVKADGYGHGAVPVARTCVAAGAARIGTALVT 71

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           E + LR     A I         +       ++     ++       +     G +    
Sbjct: 72  EAIALRDAGITAPILAWIFTPGERPDEALRRDIELSAGALWAIDEIAAAARRTGRTAKVH 131

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L+VDTG +R G +L +      ++     +   +++ I SHLACAD P + VN  QL  F
Sbjct: 132 LKVDTGMSRAGATLDDWPALLQHALAVQAEGSIEITGIWSHLACADTPENPVNERQLAVF 191

Query: 183 RTLISHY------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-NKSHPMQTV 235
              +          G+   +A+S+  L  P   + + RPGI++YG +    +    ++  
Sbjct: 192 DQALRIADKAGVSSGVIRHIANSAATLTLPAARYDMVRPGIAIYGLSPAPRHGDFGLRPA 251

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  AR+  +++  AG  VSYG      R + + +  +GYADG     S      +    
Sbjct: 252 MTLVARLSSVKRVAAGAGVSYGHTYVAERATTLGIVPLGYADGIMRAGSNRLEVLAAGRR 311

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
               G            + MD    D+ D    E GD + +FGP    +    + A   G
Sbjct: 312 RRIAGR-----------VCMDQFAIDLGDDP-AEPGDEVILFGPGDHGEPTCQEWADQLG 359

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+++ +IG R  + +
Sbjct: 360 TITYEIVTKIGGRVPRIH 377


>gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillum seropedicae SmR1]
 gi|300074250|gb|ADJ63649.1| alanine racemase protein [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 156/367 (42%), Gaps = 20/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I ++AL++N     A +  AR   V+K N YG G E+       A      +  
Sbjct: 3   RPIVASISISALQHNLAVARAHAPGARVWGVLKANGYGHGLERAMRGF--AAADGLALIE 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            +  V+LR       I +L G     +  ++   ++   +    Q+       +   S  
Sbjct: 61  PDYAVRLRELGWTKPILLLEGFFDADDLPVLAQHDIQFAVHCEEQIAQLEAFTAAA-SLH 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   +                   +++H A ADD  + +   + Q+ R
Sbjct: 120 AHLKMNSGMNRLGFKPETYRAAYARLQKIPSVASITLMTHFANADDAGNPLLPLAEQVRR 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVTAE 239
           F+       G   SL +S+  L+         RPG+ LYGGT          ++  +T E
Sbjct: 180 FQAGSEGLDG-PRSLCNSAADLMHAELANDWVRPGVMLYGGTPGGGSAADFGLRAAMTLE 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII I++  AGE + YG +    +   I V A GYADGYP                G  
Sbjct: 239 SRIIGIQQVPAGEAIGYGSRFVADKPMKIGVVACGYADGYPRHAPN-----------GTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     +G+++MDM   D+T     +VG  ++++G  + +D+VA A+GT  Y+L+ 
Sbjct: 288 VLVDGVKTGTVGRVSMDMLTVDLTHIPDADVGSQVELWGSKLPIDEVAYAAGTIGYELMC 347

Query: 360 RIGTRYA 366
            +  R A
Sbjct: 348 ALAPRVA 354


>gi|315037507|ref|YP_004031075.1| alanine racemase [Lactobacillus amylovorus GRL 1112]
 gi|325955971|ref|YP_004286581.1| alanine racemase [Lactobacillus acidophilus 30SC]
 gi|312275640|gb|ADQ58280.1| alanine racemase [Lactobacillus amylovorus GRL 1112]
 gi|325332536|gb|ADZ06444.1| alanine racemase [Lactobacillus acidophilus 30SC]
 gi|327182803|gb|AEA31250.1| alanine racemase [Lactobacillus amylovorus GRL 1118]
          Length = 376

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 148/384 (38%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A++ N  + M  L    +  AVVK NAYG G  ++A      G   F V
Sbjct: 6   HRPAVVKVNLGAIRRNLENEMKHLEPGQKMLAVVKANAYGHGAVEVAKVADEVGAAGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I     +   + ++  L    K L    + 
Sbjct: 66  AILDEALQLRHNDIVKPILVLGVVSPEYAPIAAVNGVSLTVPNLEWLKEAEKYLEKDNLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L +D+G  R+G +  E  DF        N     +  + +H A AD         Q
Sbjct: 126 LKIHLGIDSGMGRIGFNEDE--DFIAANKFLENNDNFFVEGMFAHFASADSSDESYFERQ 183

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---- 232
           +++FR + S    K     + +++  +        L R GI +YG         P     
Sbjct: 184 IKKFRHMESLLTVKPKWIHIDNTAASIFHSGIKSDLVRFGIGIYGLNPSSTPDTPDLKPA 243

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  ++ E+ +  ++    G+ VSYG       D++I    +GYADG+     G    
Sbjct: 244 FKLEPALSFESELTHVKTIHKGDGVSYGSTFVADEDTIIGTVPVGYADGWIRKFQGF--- 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD---- 345
                    K  +      I+G+I MD  M  + + + +  G  ++I   D    +    
Sbjct: 301 ---------KVKVGDKYCTIVGRICMDQFMVKMPEKMPV--GTKVEIISADPTAPNNIKA 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T +Y++   +  R  + Y
Sbjct: 350 AADYVDTIHYEVACLLNDRLPRVY 373


>gi|186476117|ref|YP_001857587.1| alanine racemase [Burkholderia phymatum STM815]
 gi|184192576|gb|ACC70541.1| alanine racemase [Burkholderia phymatum STM815]
          Length = 363

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 147/348 (42%), Gaps = 22/348 (6%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83
              +  ++  AVVK NAYG G  +  P L       F +  +EE VKLR       I +L
Sbjct: 29  RRYAPKSKIWAVVKANAYGHGLARAFPGLRA--TDGFGLLDLEEAVKLRELGWAGPILLL 86

Query: 84  YGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142
            G   P    +I   +L   + S  QL    ++          L++++G NRLG + ++ 
Sbjct: 87  EGFFRPTDIDVIDRYSLTTALHSDEQLRML-EMARLSKPVNIQLKMNSGMNRLGYTPEKF 145

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGI 202
                 +   +      +++H + AD       S Q+E F        G   SLA+S+  
Sbjct: 146 RAAWERARACQGVGQITLMTHFSDADSERGI--SHQMEAFERGAQGIAGA-RSLANSAAT 202

Query: 203 LLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           L  P  HF   RPG+ LYG +        K   +Q  +T  + +I ++    G+ + YG 
Sbjct: 203 LWYPEAHFDWVRPGVMLYGASPSGVSSAIKDTGLQPAMTLASELIAVQTLAQGQTIGYGS 262

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
                    I V A GYADGYP                G    + G    I+G+++MDM 
Sbjct: 263 TFTAREGMRIGVVACGYADGYPR-----------VAPEGTPIIVDGIRTRIVGRVSMDMI 311

Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
             D+T      VG  ++++G  + +DDVA + GT  Y+L+  +  R  
Sbjct: 312 TVDLTPCPQANVGSRVELWGAQLPVDDVAQSCGTIGYELVCAVAPRVP 359


>gi|281422046|ref|ZP_06253045.1| alanine racemase [Prevotella copri DSM 18205]
 gi|281403835|gb|EFB34515.1| alanine racemase [Prevotella copri DSM 18205]
          Length = 389

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 98/391 (25%), Positives = 165/391 (42%), Gaps = 44/391 (11%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               ++IDL  +K N+     +L  +    AV+K +AYG G   IA  L   G + F V+
Sbjct: 10  RRSWIEIDLDQIKQNYFIYKNSLQSDVEIMAVIKADAYGHGDAHIARWLSEQGCRLFAVS 69

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +++E V LR    +  I +L    P   K +   +L   I S     +   L   G    
Sbjct: 70  NIDEAVGLRNAGIKGEILILGYTSPKYAKTLSYLDLSQAIVSEE---YAEALSQAGQRVK 126

Query: 124 YALQVDTGFNRLGL------SLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHV 174
               +DTG NR+GL      S +E +    +S       +  + +HL  AD   + +   
Sbjct: 127 CQFAIDTGMNRIGLDGDNTSSCEEIIRKYSDSLI-----VEGLFTHLCVADTDTEEAKKF 181

Query: 175 NSVQLERFRTLISHYKGIE---ASLASSSGILLGPNYHFQ------LTRPGISLYGGTDK 225
              Q+ +F+ +      ++       +S+G L   N + +      + R GI LYG    
Sbjct: 182 TYGQIRKFKAVADAVSDLKLPFVHCCNSAGGLYYLNNNSEFEGVGKIVRLGIVLYGLKPD 241

Query: 226 INKSHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           +    P   +  +T ++ + +++    GE + YG    + ++  +A    GYADG    L
Sbjct: 242 VENQLPDGVKPAMTWKSVVSMVKNVHPGETIGYGRTFTVEKEMKVATVTTGYADGLNRLL 301

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
           S             G   I GY  PI+G+I MD T+ D+T+   +++G  + I G     
Sbjct: 302 SN-----------KGFVMINGYKAPIVGRICMDQTLVDVTEIPDVKMGTEVVIIGKSGDL 350

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
               DD+A   GT  Y+++  I  R  +FY 
Sbjct: 351 IYTSDDMAQDLGTIGYEVICNITKRVQRFYC 381


>gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
          Length = 818

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 156/370 (42%), Gaps = 21/370 (5%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            RL+++L+AL +N  +    L    +T  ++K  AYG G  ++A  L    V    V   
Sbjct: 460 ARLEVNLSALAHNLRAYQRCLKPGVKTMVMIKATAYGAGSREVARLLEYLRVDYCCVAYA 519

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +EG +LR     A I VL     G  + +    L PV+ S+ Q    + +    + H   
Sbjct: 520 DEGTELRQAGISAPIMVLNP-EAGAFEQMRLQRLEPVVYSLEQ---LNNMSQEALPHGVH 575

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRT 184
           L +D+G +RLG  L E               +  + +HLA ++DP+       Q  RF  
Sbjct: 576 LSIDSGMHRLGFDLHEMEGLLDYLRTHPELHVKSVYTHLAASEDPAHDAFTHEQARRFNQ 635

Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             +    +          +S+GI   P Y   + R GI LYG         P+Q V++ +
Sbjct: 636 AYARITAVLGYHPLQHALNSNGITRFPQYQQDMVRLGIGLYGIDVSNTLPEPLQVVLSFK 695

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A I  I+   AGE + YG + +          ++GYADG                     
Sbjct: 696 ATISQIKTIAAGETIGYGRRAQAHSLMRTGTISVGYADGLRRAAGNGAFS---------- 745

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             ++G   PILG + MDM+M D+T     + GD ++IFG D  + ++A    T  Y++  
Sbjct: 746 VGVRGKRAPILGSVCMDMSMIDLTHIPEAQTGDTVEIFGHDPSVQELAKILATIPYEVFT 805

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 806 GISQRVKRVY 815


>gi|261318416|ref|ZP_05957613.1| alanine racemase [Brucella pinnipedialis B2/94]
 gi|261297639|gb|EEY01136.1| alanine racemase [Brucella pinnipedialis B2/94]
          Length = 353

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 120/353 (33%), Positives = 178/353 (50%), Gaps = 28/353 (7%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT-PQARIFVLYGIHPGQEKI 93
           +VK +AYGLG  ++APA Y AG +DFFV  + E V L+ +  P A ++VL G+ PG E  
Sbjct: 1   MVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEAVALKPFLKPDATLYVLNGLQPGTEAA 60

Query: 94  IFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
                ++PV++S+ Q+  ++ L    G   P  LQ DTG +RLGLS +E      N    
Sbjct: 61  CAREGILPVLNSLEQVENWAALATRLGKKLPALLQFDTGMSRLGLSAKEFDRLLENVTLL 120

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL 212
               +   ISHLA  D+P +  N+ QL +   L++    + A+LA+S G  LG  Y+F L
Sbjct: 121 SRIDIKFAISHLANGDEPGNAANARQLAKMTALLARLPKLPAALANSGGTFLGKTYYFDL 180

Query: 213 TRPGISLYGGTDKINKSHPMQ-------------TVVTAEARIILIRKALAGELVSYGGQ 259
            RPGI+LYG   +       +              V+T  AR+I +R    G  V YGG 
Sbjct: 181 ARPGIALYGIDPERQHDFSDKVAHENKKPKHSILPVLTLSARVIQVRDVDKGATVGYGGT 240

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
                   IA  A+GYADG   +LS             G  F     +PI+G+++MD   
Sbjct: 241 YVANGPMRIATIAVGYADGLFRSLSN-----------KGAAFFGDTRLPIIGRVSMDSIT 289

Query: 320 FDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            D+T      +++G  +++ GP  +L+DVA    T  Y++L  +G RYA+ Y 
Sbjct: 290 LDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALGNRYARVYV 342


>gi|308389771|gb|ADO32091.1| alanine racemase [Neisseria meningitidis alpha710]
 gi|325131163|gb|EGC53883.1| alanine racemase [Neisseria meningitidis OX99.30304]
 gi|325136699|gb|EGC59299.1| alanine racemase [Neisseria meningitidis M0579]
 gi|325201690|gb|ADY97144.1| alanine racemase [Neisseria meningitidis M01-240149]
 gi|325208574|gb|ADZ04026.1| alanine racemase [Neisseria meningitidis NZ-05/33]
          Length = 352

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGITEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|323138212|ref|ZP_08073284.1| alanine racemase [Methylocystis sp. ATCC 49242]
 gi|322396464|gb|EFX98993.1| alanine racemase [Methylocystis sp. ATCC 49242]
          Length = 382

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 198/365 (54%), Gaps = 12/365 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL+AL +NW +++ L G A   AVVK + YG+G   +  AL  AG + FFV +V EG
Sbjct: 25  LTVDLSALVSNWRALSTLGGQAECGAVVKADGYGVGQIPVMRALLAAGCRTFFVATVVEG 84

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
              R   P+A I+VL G+ PG    +    L P I S  +L  ++    + G     A+ 
Sbjct: 85  ETARALAPEATIYVLDGVAPGCALRLAAARLRPAIGSFAELEEWAAAGRTLGRKLEAAIH 144

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG NRLG S  +A D    +   K    ++++SHL+ +  P + VN+ Q+  F     
Sbjct: 145 FDTGMNRLGFSPADAADVAERA---KAIAPTVVMSHLSTSQIPEAPVNARQIAAFEETRR 201

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
           H+ G+ AS+A+SS + L    HF+LTRPG +LYGG      ++PM+ VV+  ARII +R 
Sbjct: 202 HFPGLAASMANSSAVFLPEKPHFELTRPGYALYGGNPTPGAANPMRAVVSLHARIIAMRD 261

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V Y G     R S +A    GYADG P++ +      +      G+  + G   
Sbjct: 262 LAPGDCVGYDGIWTAARPSRVATIGAGYADGLPVSAT------AAPKKPAGEAIVGGVRC 315

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P +G+++MD  + D+TD+   + + G ++++ G  I ++++A  + T  Y++L R+G RY
Sbjct: 316 PFIGRVSMDYIVLDVTDAPREAAQRGAWVELLGETIDVEELAGRARTIGYEVLTRLGRRY 375

Query: 366 AKFYT 370
           A+ Y 
Sbjct: 376 ARRYV 380


>gi|293573028|ref|ZP_06683970.1| alanine racemase [Enterococcus faecium E980]
 gi|291606930|gb|EFF36310.1| alanine racemase [Enterococcus faecium E980]
          Length = 374

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 151/380 (39%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I   A+  N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 7   HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 66

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
           ++++EGV+LR       I +L  +      +    +L     +   L   + ++      
Sbjct: 67  SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTREWLQAAAAILEESKLE 126

Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+ DTG  R+G  + +E  +        ++ +   + +H + AD       ++Q
Sbjct: 127 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQSDDTYWNLQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            ERF  ++     +     +++S+  L        + R G+++YG       + + +P+Q
Sbjct: 187 KERFMEVLKKLSELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 246

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I ++K  AGE + YG          I    IGYADG+   + G        
Sbjct: 247 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   ++G     +G++ MD  M  +     +  G  + + G     +I + DVA  
Sbjct: 302 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 352

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++   +G R  + Y
Sbjct: 353 LGTIHYEVACGLGQRIPREY 372


>gi|329666669|gb|AEB92617.1| alanine racemase [Lactobacillus johnsonii DPC 6026]
          Length = 376

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 144/384 (37%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V
Sbjct: 6   HRPAVVKVNLGAIKRNLENEMEHLEPGQKMLAVVKANGYGHGAVEVARVADKVGAAGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I    N+   + ++  L    K L    + 
Sbjct: 66  AILDEALELRRADITKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKEAEKYLKDANLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L +D+G  R+G    E  DF        N     +  + +H A AD         Q
Sbjct: 126 LKIHLGIDSGMGRIGF--NEDADFIAANEFLENNDNFFIEGMFAHFASADSSDETYFKHQ 183

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---- 232
            E+F  + S    K     + +++  +        L R GI +YG     N S P     
Sbjct: 184 CEKFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPSSPDLKSN 243

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G   +
Sbjct: 244 IKLEPALSFESELTHVKTIHQGDGVGYGSTFVADEDTIIGTVPVGYADGFIRKFQGFKIK 303

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDD 345
                       +     PI+G+I MD  M  +   + +  G  + I          +  
Sbjct: 304 ------------VGDTYCPIVGRICMDQFMVKMPKKMPV--GTKVTIISSNPNDQNNIKA 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T +Y++   +  R  + Y
Sbjct: 350 AADYVDTIHYEVACLLNDRLPRVY 373


>gi|238751628|ref|ZP_04613118.1| Alanine racemase, catabolic [Yersinia rohdei ATCC 43380]
 gi|238710190|gb|EEQ02418.1| Alanine racemase, catabolic [Yersinia rohdei ATCC 43380]
          Length = 358

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 158/367 (43%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I+L+AL +N + +    G A+  +VVK NAYG G  ++   L  A    F +  
Sbjct: 3   RPISATINLSALHHNLNIVRQHVGAAKIWSVVKANAYGHGLARVWQGL--AATDGFAMLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    Q  I +L G   P    ++   +L   + S  QL   +          
Sbjct: 61  LNEAIMLREQGWQGPILLLEGFFQPRDIMLLDHYHLTTTVHSDWQLEAINAAR-LSAPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+ ++G NRLG  + +       + +        ++SH A AD+P       Q    +
Sbjct: 120 IYLKFNSGMNRLGFPIGQMDAIWQWATSLSNVGDITLMSHFANADNPIG--VGEQFSVIQ 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
              +        LA+S+ IL  P  HF   RPGI LYG +   +        +Q V++  
Sbjct: 178 QASAAIPAARC-LANSAAILGNPETHFDWVRPGIILYGASPSGDVADIAEIGLQPVMSLN 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   AG  V YG + +      I V A GYADGYP                G  
Sbjct: 237 SEIIALQSLTAGHCVGYGSRYQARSAQRIGVVACGYADGYPRLAPN-----------GTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G I+MDM   D+T     ++G  ++I+G ++ +D VA A+GT  Y+L+ 
Sbjct: 286 IMVDGILTQTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVPIDTVAQAAGTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 ALANRVK 352


>gi|282849282|ref|ZP_06258667.1| alanine racemase [Veillonella parvula ATCC 17745]
 gi|282580986|gb|EFB86384.1| alanine racemase [Veillonella parvula ATCC 17745]
          Length = 370

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 166/379 (43%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               L I+ + ++ N   +  +L   + + AV+K N YG G   +       G +   V 
Sbjct: 2   RPTYLTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
             EE V LR       I++L    P   +++ DTN IP +     L    K+     +  
Sbjct: 62  IPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALDKVADNHDMII 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             A+ VDTG +R+G+  ++A++F     + +  ++    SH++ AD         Q ++F
Sbjct: 122 RVAVAVDTGMHRIGIKPEDAIEFIKRIESYENLEIDGFFSHMSNADAADQSHAHSQTQKF 181

Query: 183 RTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQT 234
             ++   +          SLA+S+G+L   +  F   RPGI  YG    ++  +   ++ 
Sbjct: 182 HHMVDEIRAFRPEADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + ++ ++   AGE + YG          IA   +GYADGYP +LS          
Sbjct: 242 VLSFHSEVVHVQHIPAGEGIGYGSTYITAEPMTIATIPVGYADGYPRSLSNR-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I G   P++G+I MD  M  + D+++++ GD + + G      I   ++A  +
Sbjct: 294 ---GTVLIHGTRCPVVGRICMDQFMVAVPDTITVKPGDKVVLLGSQGHESISALEIAALA 350

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++      R  + Y
Sbjct: 351 STIPYEIFCGFSERVPRQY 369


>gi|87300882|ref|ZP_01083724.1| alanine racemase [Synechococcus sp. WH 5701]
 gi|87284753|gb|EAQ76705.1| alanine racemase [Synechococcus sp. WH 5701]
          Length = 403

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 185/384 (48%), Gaps = 28/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +H  +   +++D TA+++N  ++   L+ ++   AVVK + YG G   +A A    G   
Sbjct: 21  LHPRQRAWVEVDETAIEHNARALGRWLAPDSSLMAVVKADGYGHGAAPVARAAMAGGATS 80

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117
             V +++EG++LR    +A + V+   IHP + +   + +L+P IS + +      L S 
Sbjct: 81  LGVATLQEGIELRQAGLEAPVLVMGNLIHPEELRSCLEWDLMPTISGMREALLCQNLASG 140

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHV 174
            G S    L++DTG  RLG+   + +             L+ + SHLA AD P      +
Sbjct: 141 SGRSMALHLKLDTGMARLGVDWGDGVRLLQALLGLDAVLLAGVYSHLADADAPDPGGGGL 200

Query: 175 NSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
            ++Q +RF +++     +        LA+S+G L     H+ L R G++LYG     + S
Sbjct: 201 TALQQQRFESVLRGAGELGLATGVRHLANSAGTLRCRRLHYDLVRVGLALYGQAPAEHLS 260

Query: 230 H--PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           H  P+Q  ++  AR+ LIR+  AG  VSYG +    R S +AV  IGYADG P  LS   
Sbjct: 261 HTVPLQPAMSVRARVCLIREVPAGVGVSYGHRYTTRRPSRLAVVTIGYADGVPRLLSNQL 320

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                      +    G  +  +G ITMD  + D T++  +EVG  + + G D    I  
Sbjct: 321 -----------EVLFAGRRLAQVGAITMDQLLIDATEAPQLEVGSVVTLLGDDGGERITP 369

Query: 344 DDVALASGTTNYDLLVRIGTRYAK 367
            D A ASGT  +++L     R  +
Sbjct: 370 QDWAQASGTIPWEILCGFKHRLPR 393


>gi|319952867|ref|YP_004164134.1| alanine racemase [Cellulophaga algicola DSM 14237]
 gi|319421527|gb|ADV48636.1| Alanine racemase [Cellulophaga algicola DSM 14237]
          Length = 375

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/377 (27%), Positives = 153/377 (40%), Gaps = 21/377 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M   +   L+I+LTAL++N+  +   +S   +   VVK  AYG     IA  L   G   
Sbjct: 1   MAKAQETVLEINLTALEHNYRYLKTKISSKTKFLGVVKAFAYGSDAVSIAQKLVALGADY 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMS 117
             V   EEGV LR    +  I VL+         I +  L P + S   LT +  +    
Sbjct: 61  LAVAYTEEGVSLRNAGIKIPILVLHP-QIVSFDTIIERCLEPNLYSERILTAFITAAERH 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176
               +P  L+ +TG NRLG + ++              ++  I SHLA ++D        
Sbjct: 120 QQKIYPIHLKFNTGLNRLGFNAKDIPSIVKKLSETTAVKVLSIFSHLAASEDLEEKDFTL 179

Query: 177 VQLERFR----TLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q++ F      + +    I    LA++SGI+  P  HF + R GI LYG  + I++   
Sbjct: 180 NQIKNFNIISTQIDAALPYIPFKHLANTSGIINYPEAHFDMVRSGIGLYGFGNDIDEDKN 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
              V T +  I  I      E V Y       +    A   +G+ADG             
Sbjct: 240 FIPVATLKTNISQIHYLEPNESVGYNRAFTSNKKIKTATLPLGHADGIGREYGN------ 293

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G   + GY  PI+G   MDM M D+TD      GD + +FG      + A  + 
Sbjct: 294 ----GKGVVCVHGYYAPIIGNTCMDMIMVDVTDI-DCSEGDEVIVFGNKPTATEFAAGAN 348

Query: 352 TTNYDLLVRIGTRYAKF 368
           T +Y++L  I  R  + 
Sbjct: 349 TISYEVLTGISQRVKRV 365


>gi|313813897|gb|EFS51611.1| alanine racemase [Propionibacterium acnes HL025PA1]
          Length = 375

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 149/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLSPADPCDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|72382936|ref|YP_292291.1| alanine racemase [Prochlorococcus marinus str. NATL2A]
 gi|72002786|gb|AAZ58588.1| alanine racemase [Prochlorococcus marinus str. NATL2A]
          Length = 402

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 169/383 (44%), Gaps = 29/383 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                +++D   ++NN   +    G+     AVVK + YG G E +A +    G     V
Sbjct: 29  RSRAWVEVDSKIIENNARVLKNFIGDDCSLMAVVKADGYGHGAETVAKSALTGGADSLGV 88

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMS-CGV 120
            ++EEG++LR    + +I +L  +   +E    F  +LIP IS + +    + +      
Sbjct: 89  ATLEEGIQLRNAGLKCQILILGNLINSEELYSSFCWDLIPTISGIREAIICNNIAENKNK 148

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-----DDPSSHVN 175
                L++DTG  RLG +  +  +  +     +   L  I SHLA A     ++      
Sbjct: 149 KFAIHLKIDTGMTRLGCNCNQFKELINKIDCLENIALEGIYSHLAIADRYLENNTQLSFT 208

Query: 176 SVQLERFRTLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            +QL RF  ++       K I   LA+S+G L     HF + R G+SLYG     +    
Sbjct: 209 QIQLNRFEKVLKGLGKRNKFICRHLANSAGTLSDSRLHFDMVRVGLSLYGYFPVNDFKSD 268

Query: 232 MQ--TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++    +  +AR+ L+R    G  V YG   K  R S +AV AIGYADG   +LSG  S 
Sbjct: 269 LKLSPALKVKARVTLVRDVGKGIGVGYGHFFKTQRASKLAVVAIGYADGVSRSLSGKISA 328

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       I G +VP +G I MD  +FDITD   I+ G  + + G D    I   D
Sbjct: 329 S-----------IDGVLVPQVGAIAMDQMVFDITDKPDIKTGQVLTLLGTDGEVCISPQD 377

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
               SG+  +++L     R  + 
Sbjct: 378 WCDLSGSIPWEVLCSFRNRLPRV 400


>gi|332637957|ref|ZP_08416820.1| alanine racemase [Weissella cibaria KACC 11862]
          Length = 494

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 152/375 (40%), Gaps = 23/375 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                 L+I   AL +N   +  L+   R  AVVK NAYG G  +I  A   AGV  F V
Sbjct: 129 ERRPSWLEISAEALAHNVAYVRELTETNRFFAVVKANAYGHGLPQIVTAAKRAGVDGFAV 188

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +++EGV LR +  +  I +L          +   +LIPV++S   L      ++   + 
Sbjct: 189 ATIDEGVWLRQFGVKLPILILGVTPATYVADLAKYDLIPVVASETWLDDALSQLNSEATL 248

Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             ++ VDTG  R+G+  + E                  I  H A AD   +     QL +
Sbjct: 249 TVSVAVDTGMGRIGIRDRTELERVVAKLNAADNVVFQGIGMHFATADGNDTVYFEKQLAK 308

Query: 182 FRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVV 236
           +  L         I   LA+S   L          R G ++YG         +  +Q V+
Sbjct: 309 WHELTDELDLPADIWRHLANSGTSLWHEQPSTDAVRVGAAMYGFDASQGALPNRELQPVL 368

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + +A ++ +++  AG  +SYG     T    I    +GYADGYP  L G+D         
Sbjct: 369 SLKAELVHVKQVPAGTSISYGATYTTTEPEWIGTVPVGYADGYPRALQGMDVL------- 421

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
                  G    ++G+I MD  M  + + + +  G  + + G     +I L D+A    T
Sbjct: 422 ----LPDGRRAELVGRIAMDQFMIRLPEEMPV--GTVVTLIGQVGDEEITLVDLANKMDT 475

Query: 353 TNYDLLVRIGTRYAK 367
             Y++   +  R  +
Sbjct: 476 IPYEIATGLSPRLPR 490


>gi|154246344|ref|YP_001417302.1| alanine racemase [Xanthobacter autotrophicus Py2]
 gi|154160429|gb|ABS67645.1| alanine racemase [Xanthobacter autotrophicus Py2]
          Length = 357

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 145/362 (40%), Positives = 207/362 (57%), Gaps = 11/362 (3%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71
           DL A+ +NW ++ AL+  A  AAVVK NAYGLG +++AP L+ AG ++FFV   +E V L
Sbjct: 2   DLGAIADNWRTIAALAAPAECAAVVKANAYGLGIDRVAPVLWRAGARNFFVAHFKEAVAL 61

Query: 72  RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDT 130
           R   P+A I+VL G+ P         NL PV+ S P+++ +S      GV  P A+ VDT
Sbjct: 62  RALLPEAIIYVLNGLLPDCAADYAAANLRPVLGSTPEISDWSDYCRDAGVKLPAAIHVDT 121

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
           G +RLGLSL+EA+     +F       SLI+SHLACAD P   + + Q   F  ++  + 
Sbjct: 122 GMHRLGLSLEEAVQL-SGTFRLLGFTPSLIMSHLACADTPGHVLTARQRMVFADVVRRFP 180

Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALA 250
           GI  SLA+S+G LLG ++ F+L RPGI LYGG   IN   P++ VV  E +++ +  A A
Sbjct: 181 GIPGSLANSAGTLLGRDFRFELVRPGIFLYGGI-AINGVPPLRPVVRLEVKVVQVSTAPA 239

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           GE V YG  ++L R S +A  +IGYADG            S     G +  + G    ++
Sbjct: 240 GETVGYGAAQRLKRPSRLATVSIGYADGLFRA------GGSTDAIKGVEAIVHGQRCHLV 293

Query: 311 GKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
           G+++MD+   DITD     ++ GD     G  I +DD+A  SGT  Y++L  +G RYA+ 
Sbjct: 294 GRVSMDLATLDITDLPDGVVQRGDTAVFLGDGISVDDLAARSGTIGYEVLTSLGARYARH 353

Query: 369 YT 370
           Y 
Sbjct: 354 YV 355


>gi|296106326|ref|YP_003618026.1| alanine racemase [Legionella pneumophila 2300/99 Alcoy]
 gi|295648227|gb|ADG24074.1| alanine racemase [Legionella pneumophila 2300/99 Alcoy]
          Length = 357

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/368 (26%), Positives = 176/368 (47%), Gaps = 21/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   RL I+ +AL +N   +  L+   +  A+VK NAYG G  ++AP L +  ++ F V 
Sbjct: 2   SRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + +R    +    +  G+    E  +  + +   ++    QL +  K        
Sbjct: 61  CLEEALAIRALGVETPCILFQGVFSSDELSVAVENDFACILHHAQQLEWLIK-TPLPYPI 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++V+TG +RLG  + E             + +   +++HLACAD+P    N  Q+  
Sbjct: 120 KIWVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKNIGLMTHLACADEPHRPENQQQISL 179

Query: 182 FRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVT 237
           F+ +     G    S+A+S+ I+  P+ H  + RPGI LYG +   N++        V+ 
Sbjct: 180 FQEI--SIPGFRQRSIANSAAIISFPDSHADVVRPGIMLYGVSPFANQNARDLSLIPVMR 237

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I  I    +   V YGG  K  + S I + A GY DGYP  +S             
Sbjct: 238 FMSAISAIHDNPSFAQVGYGGTWKSDKPSRIGIVAAGYGDGYPRHIS-----------EK 286

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              +++G  V I+G+++MDM   D+T+   +E+GD ++++G  + ++ +A ++GT  Y+L
Sbjct: 287 TPVWVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGTVGYEL 346

Query: 358 LVRIGTRY 365
           L +I  R 
Sbjct: 347 LCQISERV 354


>gi|291459573|ref|ZP_06598963.1| alanine racemase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417851|gb|EFE91570.1| alanine racemase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 429

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/375 (26%), Positives = 165/375 (44%), Gaps = 30/375 (8%)

Query: 11  IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +DL  ++ N  +   L     R  +V+K +AYG G   +A A+ +     + V + EEG 
Sbjct: 45  VDLDIIRENVRNARKLLPKGCRFCSVLKADAYGHGAPAVASAIDDLS-DFYAVATPEEGA 103

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQV 128
            LR +  Q  I VL  +      ++ +  + P +  + Q    SK     G +    L V
Sbjct: 104 LLRAHGFQKPILVLGAVSDRAYPMLLERRIRPAVFLLSQAKALSKAAGEAGCTALLHLAV 163

Query: 129 DTGFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           DTG  R+G++ +E    +   +       ++  I +H + AD+     + +Q ERFR   
Sbjct: 164 DTGMGRIGIASEEEGSAELALSIAALPNLKVEGIFTHFSTADETDKEFSFLQRERFRRFC 223

Query: 187 SHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTA 238
                +G+       A+S+GI+      F + R GI+LYG            P++  ++ 
Sbjct: 224 EKLSERGLSIPIRHCANSAGIIASIGTDFDMVRDGIALYGIYPSRAAESARLPLKAALSW 283

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A++  +R+  A   +SYG      R++ +AV  +GY DG P  LS              
Sbjct: 284 FAKVSAVRRLPASSPISYGRTFTTARETELAVIPLGYGDGLPRLLSNR-----------A 332

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354
           +  I+G   PILG+I MD  M D+T  L +  GD + + G     +I L D     G   
Sbjct: 333 EVLIRGRRCPILGRICMDQFMADVTG-LGVRRGDRVTLLGRDGEEEIGLYDW-ERLGAFP 390

Query: 355 YDLLVRIGTRYAKFY 369
           Y++L  +G R  + Y
Sbjct: 391 YEVLCGLGKRVPRLY 405


>gi|161506851|ref|YP_001576805.1| alanine racemase [Lactobacillus helveticus DPC 4571]
 gi|172048359|sp|A8YXI3|ALR_LACH4 RecName: Full=Alanine racemase
 gi|160347840|gb|ABX26514.1| Alanine racemase [Lactobacillus helveticus DPC 4571]
          Length = 376

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 145/381 (38%), Gaps = 30/381 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               +K++L A++ N  + M  L  N +  AVVK N YG G  ++A      G   F V 
Sbjct: 7   RPAVVKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
            ++E ++LR       I VL  + P    I    N+   + ++  L    K L    +  
Sbjct: 67  ILDEALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDAEKYLAKENLQL 126

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +D+G  R+G +  +     +    N     +  + +H A AD         Q E+
Sbjct: 127 KIHLGIDSGMGRIGFNEDDEFVAANKFLENNNNFFIEGMFAHFASADSDDETYFKHQCEK 186

Query: 182 FRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------- 232
           F+ + S    K     + +++  +        L R GI +YG     N S P        
Sbjct: 187 FKHMKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIEL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G       
Sbjct: 247 EPALSFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348
                 K  +      I+G+I MD  M  +   + +  G  + I   +      +   A 
Sbjct: 301 ------KVKVGDEYCSIVGRICMDQFMVKMPKKMLV--GTKVVIISNNPSDPNNIKAAAD 352

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T +Y++   +  R  + Y
Sbjct: 353 YVDTIHYEVACLLNDRLPRVY 373


>gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
 gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
          Length = 896

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + +    +   ++K + YG G  +IA  L +  V    V   +E
Sbjct: 537 LEVNLNAVVDNLNHYRSFMKPTTKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVADE 596

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD +L P + S   L    K          P  
Sbjct: 597 GVTLRKNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLEALIKAAEKEGVAGFPVH 655

Query: 126 LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG    + +D       ++       + SH   +D  S    ++ Q   F 
Sbjct: 656 VKLDTGMHRLGFDPNKDIDRLIARMQHQNAVIPRSVFSHFVGSDSDSFDEFSARQFALFD 715

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R G+ LYG   + N  H +  V T 
Sbjct: 716 EGSRKLQAAFPHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGIDSRNN--HIINNVCTL 773

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R   AG+ V Y  +  + RDS+IA   IGYADG    L               
Sbjct: 774 KTTILQLRHVPAGDTVGYSRKGVIDRDSVIAAIPIGYADGLNRRLGNRRC---------- 823

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+TM D+T     + GD ++IFG  + +  ++ A  T  Y++L
Sbjct: 824 YCLVGGKRAEYVGNICMDVTMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDALDTIPYEVL 882

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 883 TCISNRVKRVY 893


>gi|325204612|gb|ADZ00066.1| alanine racemase [Neisseria meningitidis M01-240355]
          Length = 352

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 89/358 (24%), Positives = 159/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AVVK +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L   + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWSAVGNQWQLEALLA-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|303229989|ref|ZP_07316763.1| alanine racemase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515355|gb|EFL57323.1| alanine racemase [Veillonella atypica ACS-134-V-Col7a]
          Length = 370

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 167/379 (44%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               L ID + ++ N   +  +L   + + AV+K N YG G   +       G +   V 
Sbjct: 2   RPTYLTIDTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
             EE V LR       I++L    P   +++ DTN IP +     L   +K+     +  
Sbjct: 62  IPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALNKVADNHDMII 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             A+ VDTG +R+G+  ++A++F     +     +    SH++ AD         Q ++F
Sbjct: 122 RVAVAVDTGMHRIGIKPEDAVEFIKRVESYPNLAVDGFFSHMSNADAADQSHAHGQAQKF 181

Query: 183 RTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQT 234
            T++   +          SLA+S+G+L   +  F   RPGI  YG    ++  +   ++ 
Sbjct: 182 HTMVDEIRAFRPDADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + ++ ++   AGE + YG          IA   +GYADGYP +LS          
Sbjct: 242 VLSLHSEVVHVQHLEAGEGIGYGSTYITPEPMTIATIPVGYADGYPRSLSNR-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I+G   P++G+I MD  M  + D+++++ GD + + G      I   ++A  +
Sbjct: 294 ---GTVLIQGTRCPVVGRICMDQFMVAVPDTITVKPGDKVVLLGSQGHESISALEIAALA 350

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++      R  + Y
Sbjct: 351 STIPYEIFCGFSDRVPRQY 369


>gi|210631730|ref|ZP_03296972.1| hypothetical protein COLSTE_00857 [Collinsella stercoris DSM 13279]
 gi|210159850|gb|EEA90821.1| hypothetical protein COLSTE_00857 [Collinsella stercoris DSM 13279]
          Length = 383

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 107/385 (27%), Positives = 165/385 (42%), Gaps = 30/385 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            +   +I+  AL+ N  +  +L G   R   VVK +AYG G    A  ++ AG   F V 
Sbjct: 10  RWAWAEINTGALRRNTRAFKSLIGARQRLCCVVKADAYGHGAASCAKVMHAAGADMFAVA 69

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
           +V EGV LR    +  I +L     G    + + +++P + S      +  +  S G   
Sbjct: 70  TVLEGVALREAGQKLPILLLSEPPAGAIDALLEFDIMPSVYSPEFAWAYGERAASLGKVG 129

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            Y + ++TG NR+G+   E +DF  +       Q     +H A AD+P    + +Q +RF
Sbjct: 130 KYHMAINTGMNRIGVHYTEVVDFRRSVDFHAGLQCDGTFTHFATADEPDGWDHQLQCKRF 189

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235
              ++  +            ++ G +L P  HF + R GI LYG     +     P++ V
Sbjct: 190 SEAVACLRDAGFDPGIVHCDNTPGSILNPAMHFDMIRAGIGLYGLQPCERTRAVLPLEPV 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSV 294
           ++ +AR+        GE V YG   ++ R  + I    IGYADG P  LS          
Sbjct: 250 MSIKARVTHTCHPAMGEGVGYGFTYRVPRTRVEICTLPIGYADGLPRVLSNRM------- 302

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITD-----SLSIEVGDYIQIFGPD----IKLDD 345
               +    G  +  +G I MD  M  I++         EVGD + I G D    I LD+
Sbjct: 303 ----EVLFNGRRMRQVGNICMDQCMVAISENPMHPVPEAEVGDLMTIVGRDGDAQITLDE 358

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +A    T NY+L    G R  K Y 
Sbjct: 359 LASMCQTINYELACGFGMRLEKIYV 383


>gi|42518359|ref|NP_964289.1| alanine racemase [Lactobacillus johnsonii NCC 533]
 gi|32329446|emb|CAD70179.1| alanine racemase [Lactobacillus johnsonii]
 gi|41582644|gb|AAS08255.1| alanine racemase [Lactobacillus johnsonii NCC 533]
          Length = 376

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 144/384 (37%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V
Sbjct: 6   HRPAVVKVNLGAIKRNLKNEMGHLEPGQKMLAVVKANGYGHGSVEVARVADKVGAAGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I    N+   + ++  L    K L    + 
Sbjct: 66  AILDEALELRRADITKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKEAEKYLKDANLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L +D+G  R+G    E  DF        N     +  + +H A AD         Q
Sbjct: 126 LKIHLGIDSGMGRIGF--NEDADFITANEFLENNDNFFIEGMFAHFASADSSDETYFKHQ 183

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---- 232
            E+F  + S    K     + +++  +        L R GI +YG     N + P     
Sbjct: 184 CEKFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPNSPDLKSN 243

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G    
Sbjct: 244 IKLEPALSFESELTHVKTIHQGDGVGYGSTFVADEDTIIGTVPVGYADGFIRKFQGF--- 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDD 345
                    K  +     PI+G+I MD  M  +   + +  G  + I          +  
Sbjct: 301 ---------KVKVGDTYCPIVGRICMDQFMVKMPKKMPV--GTKVTIISSNPNDQNNIKA 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T +Y++   +  R  + Y
Sbjct: 350 AADYVDTIHYEVACLLNDRLPRVY 373


>gi|52840976|ref|YP_094775.1| hypothetical protein lpg0739 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54296765|ref|YP_123134.1| hypothetical protein lpp0804 [Legionella pneumophila str. Paris]
 gi|81822627|sp|Q5X709|ALR_LEGPA RecName: Full=Alanine racemase
 gi|81823455|sp|Q5ZXJ2|ALR_LEGPH RecName: Full=Alanine racemase
 gi|52628087|gb|AAU26828.1| alanine racemase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53750550|emb|CAH11952.1| hypothetical protein lpp0804 [Legionella pneumophila str. Paris]
          Length = 357

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 101/368 (27%), Positives = 175/368 (47%), Gaps = 21/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   RL I+ +AL +N   +  L+   +  A+VK NAYG G  ++AP L +  ++ F V 
Sbjct: 2   SRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + +R    +    +  G+    E  +  + +   V+    QL +  K        
Sbjct: 61  CLEEALAIRALGVETPCILFQGVFSSDELSVAVENDFACVLHHAQQLEWLIK-TPLPYPI 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++V+TG +RLG  + E             + +   +++HLACAD+P    N  Q+  
Sbjct: 120 KVWVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKSIGLMTHLACADEPHRPENQQQISL 179

Query: 182 FRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237
           F+ +     G    S+A+S+ I+  P+    + RPGI LYG +   N+      +  V+ 
Sbjct: 180 FQEI--SIPGFRQRSIANSAAIISFPDSQADVVRPGIMLYGVSPFANQNAHDLGLIPVMR 237

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I  I    +   V YGG  K  + S I V A GY DGYP  +S             
Sbjct: 238 FMSAISAIHDNPSFAQVGYGGTWKSDKPSRIGVVAAGYGDGYPRHIS-----------EK 286

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              +++G  V I+G+++MDM   D+T+   IE+GD ++++G  + ++ +A ++GT  Y+L
Sbjct: 287 TPVWVRGREVSIVGRVSMDMLTIDLTEHPDIEIGDEVELWGTHVLVERIAKSAGTVGYEL 346

Query: 358 LVRIGTRY 365
           L +I  R 
Sbjct: 347 LCQISERV 354


>gi|256844406|ref|ZP_05549892.1| alanine racemase [Lactobacillus crispatus 125-2-CHN]
 gi|256849206|ref|ZP_05554639.1| alanine racemase [Lactobacillus crispatus MV-1A-US]
 gi|262047222|ref|ZP_06020180.1| alanine racemase [Lactobacillus crispatus MV-3A-US]
 gi|295692134|ref|YP_003600744.1| alanine racemase [Lactobacillus crispatus ST1]
 gi|312978404|ref|ZP_07790146.1| alanine racemase [Lactobacillus crispatus CTV-05]
 gi|256613484|gb|EEU18687.1| alanine racemase [Lactobacillus crispatus 125-2-CHN]
 gi|256713982|gb|EEU28970.1| alanine racemase [Lactobacillus crispatus MV-1A-US]
 gi|260572467|gb|EEX29029.1| alanine racemase [Lactobacillus crispatus MV-3A-US]
 gi|295030240|emb|CBL49719.1| Alanine racemase [Lactobacillus crispatus ST1]
 gi|310894747|gb|EFQ43819.1| alanine racemase [Lactobacillus crispatus CTV-05]
          Length = 376

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 148/384 (38%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A++ N  + M  L+   +  AVVK NAYG G  ++A      G     V
Sbjct: 6   HRPAVVKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGAAGLCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I    N+   I ++  L    K L    + 
Sbjct: 66  AILDEALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLEKEQLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + VD+G  R+G +  E  DF        N     +  + +H A AD         Q
Sbjct: 126 LKVHIGVDSGMGRIGFNEDE--DFIAANKFLQNNDNFYVEGMFAHFASADSADDTYFKHQ 183

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---- 232
           +E+F  + S    K     + +++  +   +      R GI +YG     N   P     
Sbjct: 184 VEKFAHMRSLLTVKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDLKSS 243

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G    
Sbjct: 244 ISLEPALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF--- 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD---- 345
                    K  +     PI+G+I MD  M  +   + +  G  + I   D    +    
Sbjct: 301 ---------KVKVGDEYCPIVGRICMDQFMVKMPKKMPL--GTKVVIISNDPTAPNNIKA 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T +Y++   +  R  + Y
Sbjct: 350 AADYVDTIHYEVACLLNDRLPRVY 373


>gi|52000508|dbj|BAD44772.1| alanine racemase [Streptomyces lavendulae subsp. lavendulae]
          Length = 378

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 167/378 (44%), Gaps = 29/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +IDL A++ N  ++ A +  +   AVVK NAYG G    A A   AG       + EE 
Sbjct: 10  AEIDLDAVRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEA 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127
           ++LR    Q RI        G  +   +T++   +S +       +   + G +    L+
Sbjct: 70  LELRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLK 129

Query: 128 VDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            DTG  R G    +  +       +  +   Q++ + SH ACAD+P      +QL+ FR 
Sbjct: 130 ADTGLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRD 189

Query: 185 LISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TV 235
           ++++   +G++     +A+S   L  P  HF L R G+++YG +       P Q      
Sbjct: 190 MLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSPELGTPAQLGLRPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A + L++   AG  VSYG       ++ +A+   GYADG P   SG          
Sbjct: 250 MTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGR--------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             G   + G +    G+I MD  + D+ + L  E GD   I G     +   +D A A+ 
Sbjct: 301 --GPVLVAGKIRRAAGRIAMDQFVVDLGEDL-AEAGDEAVILGDAERGEPTAEDWAQAAH 357

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+++ RIG R  + Y
Sbjct: 358 TIAYEIVTRIGGRVPRVY 375


>gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
 gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
          Length = 831

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L+A+  N +   + +    +   ++K + YG G  +IA  L +  V    V   +E
Sbjct: 472 LEVNLSAVVKNLNHYRSFMKAETKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVADE 531

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD +L P + S   L    K         +P  
Sbjct: 532 GVTLRRNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGYPVH 590

Query: 126 LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG   ++ ++       ++       + SH   +D+      ++ Q   F 
Sbjct: 591 IKLDTGMHRLGFDPRQDMEQLIDRLRHQNAIIPRSVFSHFVGSDNDGFDEFSARQFALFD 650

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R G+ LYG   + N+   +  V T 
Sbjct: 651 EGSKQLQAAFEHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGINPRNNE--IIHNVSTL 708

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R+  AG+ V Y  +  L  DS++A   IGYADG    LS             G
Sbjct: 709 KTTILQMRRVPAGDTVGYSRKTVLEHDSVVAAIPIGYADGLDRHLSNRH----------G 758

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 759 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDIVDTIPYEVL 817

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 818 TGISNRVKRVY 828


>gi|182679264|ref|YP_001833410.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635147|gb|ACB95921.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 379

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 194/369 (52%), Gaps = 16/369 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW ++ A+ G A   AVVK +AYG+G E +   L  AG + +FV  V EG
Sbjct: 18  LSVDLAAIVRNWRTLQAVCGEAECGAVVKADAYGVGLEPVVRELSAAGCKTYFVAHVFEG 77

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-------MSCGVS 121
            + R     A I+VL G+ PG      +  L PV+ S+P++  + +         + G +
Sbjct: 78  RRARAIDASAIIYVLNGLVPGTAPAYLEHGLRPVLCSLPEIEEWLQFCALFGRRSAEGET 137

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P ALQ+DTG NRLGL L +       +   +   + LI+S    +   +      Q+  
Sbjct: 138 LPAALQLDTGLNRLGLRLDQIE---RAADLTESLNIKLILSQFIWSGQSNLARCETQVSL 194

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           F ++   +K + AS+A+S+GI L     + L RPG +LYGG     + +PMQ V+  EAR
Sbjct: 195 FESMRQPWKQVPASIANSAGIFLERTPLYDLVRPGYALYGGNPAPGRPNPMQGVLRLEAR 254

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I+ +     GE V Y G+        +A  +IGYADG P +  G +      V  GG+  
Sbjct: 255 ILQVNHVEQGETVGYDGRYLAKSPRRLATISIGYADGIPRSALGSE------VHPGGEVV 308

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           +KG   P +G+++MD+T+ DIT +     GD +++ G  I +D++A  S T  Y++L  +
Sbjct: 309 VKGVRCPFVGRVSMDLTVVDITLAPEAMRGDTVELIGKAISIDELATRSRTIGYEILTNL 368

Query: 362 GTRYAKFYT 370
           G+R+ + YT
Sbjct: 369 GSRFYRRYT 377


>gi|238019929|ref|ZP_04600355.1| hypothetical protein VEIDISOL_01805 [Veillonella dispar ATCC 17748]
 gi|237863453|gb|EEP64743.1| hypothetical protein VEIDISOL_01805 [Veillonella dispar ATCC 17748]
          Length = 370

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 166/379 (43%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               L I+ + ++ N   +  +L   + + AV+K N YG G   +       G +   V 
Sbjct: 2   RPTYLTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
             EE V LR       I++L    P   +++ DTN IP +     L    K+     +  
Sbjct: 62  IPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALDKVAENHDMII 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             A+ VDTG +R+G+  ++A++F     + +  ++    SH++ AD         Q ++F
Sbjct: 122 RVAVAVDTGMHRIGIKPEDAVEFIKRVESYENLEVDGFFSHMSNADAADQSHAHGQAQKF 181

Query: 183 RTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQT 234
             ++   +          SLA+S+G+L   +  F   RPGI  YG    ++  +   ++ 
Sbjct: 182 HKMVDEIRAFRPDADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + ++ ++   AGE + YG          IA   +GYADGYP +LS          
Sbjct: 242 VLSFHSEVVHVQHLEAGEGIGYGSTYVTPEPMTIATIPVGYADGYPRSLSNR-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I G   P++G+I MD  M  + D+++++ GD + + G      I   ++A  +
Sbjct: 294 ---GTVLIHGTRCPVVGRICMDQFMVAVPDTITVQPGDKVVLLGSQGHESISALEIAALA 350

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++      R  + Y
Sbjct: 351 STIPYEIFCGFSERVPRQY 369


>gi|325122726|gb|ADY82249.1| alanine racemase 1, biosynthetic [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 356

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 97/363 (26%), Positives = 164/363 (45%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 8   IDRNALQYNLNRVKQLATNSKIVSMVKANAYGHGIKDCLAALNAS--DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R    Q  + ++ G+    E  I        VI    Q  +  K             ++
Sbjct: 66  IRELGFQQPVTLIEGVFSEDEMPIAIKQKFECVIHHQQQFEWLIKHKQAYINQGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKDPEIIEVIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               + AS  +S+ I   P  HF   RPGI LYG +   ++      ++ V+T  A +I 
Sbjct: 183 ACDPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADQTVHDLDLKPVMTFSAEVIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +      E V YG      +   IA+ +IGY DGYP                     I  
Sbjct: 243 LNHIQTNEHVGYGSTFCAKQAMDIAIVSIGYGDGYPRA-----------YIKQNYVAIDK 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +  ++G+++MDM   D+T  + +++G  ++++GP   +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QLCAVVGRVSMDMIAIDVTG-MQVKLGTPVELWGPHRLVDDVADANGTIGYELLCRLSNR 350

Query: 365 YAK 367
             +
Sbjct: 351 PTR 353


>gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
 gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
          Length = 831

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L+A+  N +   + +    +   ++K + YG G  +IA  L +  V    V   +E
Sbjct: 472 LEVNLSAVVKNLNHYRSFMKAETKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVADE 531

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD +L P + S   L    K         +P  
Sbjct: 532 GVTLRRNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGYPVH 590

Query: 126 LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG   ++ ++       ++       + SH   +D+      ++ Q   F 
Sbjct: 591 IKLDTGMHRLGFDPRQDMERLIDRLRHQNAIIPRSVFSHFVGSDNDGFDEFSARQFALFD 650

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R G+ LYG   + N+   +  V T 
Sbjct: 651 EGSKQLQAAFEHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGINPRNNE--IIHNVSTL 708

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R+  AG+ V Y  +  L  DS++A   IGYADG    LS             G
Sbjct: 709 KTTILQMRRVPAGDTVGYSRKTVLEHDSVVAAIPIGYADGLDRHLSNRH----------G 758

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 759 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDIVDTIPYEVL 817

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 818 TGISNRVKRVY 828


>gi|294668465|ref|ZP_06733565.1| hypothetical protein NEIELOOT_00380 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309618|gb|EFE50861.1| hypothetical protein NEIELOOT_00380 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 352

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/366 (27%), Positives = 161/366 (43%), Gaps = 18/366 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             LR  I L  L+ N+ ++  L G  +  AV+K +AYG G  + A AL +     F V  
Sbjct: 2   RPLRADIRLDRLRENYQTLKRLHGG-KMLAVLKADAYGHGAVRCAHALADL-ADGFAVAF 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE V+LR       I +L G+    E    D   L PV++   QL    K         
Sbjct: 60  LEEAVELRTQGITQPIVLLEGVFDAAEYAAVDEYGLWPVVADQWQLETLLKH-EWKTPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G                      + ISH ACAD+    +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRAGFFPHNYASAYTALAQSGKVSDIVKISHFACADEEERGMTEMQIEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
              +   G E SLA+S+ +L  P       R G++LYG    +     ++ V+   +R+ 
Sbjct: 179 MGCAGLAG-EESLANSAAMLAYPQARRDWGRAGLALYGIDPFLENDPSIKPVMRLVSRVF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R     E + YG      R + + +AA GYADGYP   +            G    + 
Sbjct: 238 AERVLQPHEPIGYGASFYTKRSTRVGLAACGYADGYPRRAA-----------TGTPVAVN 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ILG+++MDM   ++ D+    VG  ++++G  + +++VA A+GT  Y+LL  +  
Sbjct: 287 GRRSRILGRVSMDMLTVELADTHE-GVGSEVELWGDTVSINEVAAAAGTIAYELLCNV-K 344

Query: 364 RYAKFY 369
           R    Y
Sbjct: 345 RAKFVY 350


>gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010]
 gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010]
          Length = 826

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 154/371 (41%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   +L     +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 467 LEVNLNAVVANLNWYRSLMKPETKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVADE 526

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD +L P + S   L    K          P  
Sbjct: 527 GVTLRKNGITSNIMIMNPEM-SSFKTLFDFDLEPEVYSFRILDALVKAAEKEGITGFPVH 585

Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG     +  +  +   ++       + SH   +D       ++ Q   F 
Sbjct: 586 IKLDTGMHRLGFDPISDIDELINRLKHQNAIIPRSVFSHFVGSDSDGFDDFSAQQFALFD 645

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P+    + R G+ LYG   + N+     T+ T 
Sbjct: 646 AGSKKLQAAFSHKILRHIDNSAGIEHFPSRQLDMCRLGLGLYGINPRTNERIN--TISTL 703

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R   +G+ V Y  +  +  DS+IA   IGYADG    L              G
Sbjct: 704 KTTILQLRNVPSGDTVGYSRKGTIQHDSVIAAIPIGYADGLNRHLGNRH----------G 753

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 754 YCLVGGQKAAYVGNICMDVAMIDVTGI-DCKEGDSVEIFGEHLPVTVLSDILDTIPYEIL 812

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 813 TNISNRVKRIY 823


>gi|241759708|ref|ZP_04757808.1| alanine racemase [Neisseria flavescens SK114]
 gi|241319716|gb|EER56112.1| alanine racemase [Neisseria flavescens SK114]
          Length = 352

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 96/358 (26%), Positives = 160/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L+ N+  +  L GN +  AV+K +AYG G  + A AL +     F V +
Sbjct: 2   RPLNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHALADI-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           V+EGV+LR    +  I +L G+    E    D  +L P I S  QL  +           
Sbjct: 60  VDEGVELRQNGIKNPIVLLEGVFEAAEYADVDRYDLWPAIGSQWQLEAFVHH-EWQRPTT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G                +  +  +  SH ACAD+P + +  +QLE F 
Sbjct: 119 VWLKMDSGMHRAGFFPHNYAAAYTALKQSESVENIVKFSHFACADEPENGMTEMQLEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+   +R+ 
Sbjct: 179 LACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVMRLTSRVF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP   S                 + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G    I+G+++MDM   ++  S    +G  ++++G  I +++V+  +G   Y++L  I
Sbjct: 287 GKRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVSEVAGMIPYEILCNI 343


>gi|260433528|ref|ZP_05787499.1| alanine racemase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417356|gb|EEX10615.1| alanine racemase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 344

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 135/365 (36%), Positives = 192/365 (52%), Gaps = 26/365 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RL I+L AL NNW +++A + +  T AVVK +AYGLG   +A AL   GV+ FFV   E
Sbjct: 4   ARLTINLHALVNNWRALDAKT-DVETGAVVKADAYGLGAGPVASALAEEGVRKFFVAVTE 62

Query: 67  EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG  +R    P   IFV  G   G   ++ D +L+P+++S  Q   + + +     HP+ 
Sbjct: 63  EGAAVRRAIGPGPLIFVFSGHMEGDADLLRDHDLVPLLNSPEQFQRHIQAL---PVHPFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           LQ+DTG NRLGL   +     + +   +     L++SHLACAD+P   +N  QLE FR +
Sbjct: 120 LQLDTGMNRLGLEPADWSALRNRA---EALNPVLVMSHLACADEPDHPMNRQQLEAFRGM 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                    SLA++ G+LLGP YHF L RPGI LYGG          + VVT +  +I +
Sbjct: 177 TEGVSA-PRSLAATGGMLLGPEYHFDLCRPGIGLYGGLPFTAA----KPVVTVDLPVIQV 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG   K  R S IA  A GYADG    + G           G   F    
Sbjct: 232 RDLAVGESVGYGNTWKARRPSRIATVAAGYADGLHRAIGG-----------GIDAFAGNL 280

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++G+I+MD+   D+TD       + ++I      +DD+A A+GT  Y++L  +G+RY
Sbjct: 281 PCPVVGRISMDLITIDVTDLP--HTPERLRILNGHQTVDDLAEAAGTIGYEILTSLGSRY 338

Query: 366 AKFYT 370
           ++ Y 
Sbjct: 339 SRGYV 343


>gi|262374558|ref|ZP_06067832.1| alanine racemase [Acinetobacter junii SH205]
 gi|262310554|gb|EEY91644.1| alanine racemase [Acinetobacter junii SH205]
          Length = 367

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 153/375 (40%), Gaps = 28/375 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+ N   +   + +++  AVVK NAYG G E++  AL       F +  
Sbjct: 3   RPITAVIHTQALRQNLEVVRTSAPDSKVFAVVKANAYGHGIERVYDALKT--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  +LR       I +L GI  P       +  L   + S  Q+ +  + +       
Sbjct: 61  IDEAKRLRALGWTGPILLLEGIFSPQDLFDCAEYQLSFTVHSEHQVEWIQQHIYPA-QFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP--SSHVNSVQLER 181
             L++++G NRLG   Q+      +            ++H + AD           QL  
Sbjct: 120 IFLKMNSGMNRLGFKPQQYRKIWQHLQRLNNVSNITHMTHFSDADGERFGQAGVEYQLAE 179

Query: 182 FRTLISHYKGIEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKINK----SHPMQTVV 236
           F + I    G E S+++S+ IL  P   H    R GI LYG +    K       +   +
Sbjct: 180 FESTIQDLPG-ERSVSNSAAILRYPSQVHSDYVRGGIMLYGSSPDYPKHSIHDWGLAPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + +I I++  A E V YG          I + A GYADGY             +   
Sbjct: 239 SLRSELIAIQQLNANESVGYGSSFVAAHAMTIGIVACGYADGYQR-----------TSPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    + G     +G+++MDM    +T   + E+G  + ++G       + +DDVA ASG
Sbjct: 288 GTPVLVNGIRTRTIGRVSMDMLAVYLTPVPNAEIGSEVVLWGTSKTGQILSIDDVAAASG 347

Query: 352 TTNYDLLVRIGTRYA 366
           T  Y+L+  +  R  
Sbjct: 348 TVGYELMCGVTARVP 362


>gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 825

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 150/371 (40%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   A+   N +   ++K + YG G  +IA  L +       V   +E
Sbjct: 466 LEVNLNAMVDNLNYYRAMMHPNTKLVCMIKADGYGAGAVEIAKTLQDHRADYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR     + I ++        K +FD +L P + S   L    K          P  
Sbjct: 526 GATLRRNGITSSIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGFPVH 584

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFR 183
           +++DTG +RLG   + +         N+       + SH      D     +  Q ERF 
Sbjct: 585 IKLDTGMHRLGFDPEKDVPRLIERLHNQNALIPKSVFSHFVGSDADQFDDFSQQQFERFD 644

Query: 184 ---TLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
               ++       I   + +S+GI   P     + R G+ LYG   + N       V T 
Sbjct: 645 VGSKMLQAAFEHHILRHIDNSAGIEHFPQRQLDMCRLGLGLYGINPRNNAIINN--VSTL 702

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              I+ +RK  AG+ V Y  +  +  DS+IA   IGYADG    L              G
Sbjct: 703 RTTILQLRKVKAGDTVGYSRRGTIDHDSVIAAIPIGYADGLNRRLGNR----------NG 752

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              +       +G I MD+ M D+T       GD ++IFG ++ +  ++ A  T  Y++L
Sbjct: 753 YCLVNNQQAEYVGNICMDVAMIDVTGI-DCHEGDSVEIFGDNLPVTVLSDALQTIPYEVL 811

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 812 TGISNRVNRVY 822


>gi|329850902|ref|ZP_08265747.1| alanine racemase [Asticcacaulis biprosthecum C19]
 gi|328841217|gb|EGF90788.1| alanine racemase [Asticcacaulis biprosthecum C19]
          Length = 350

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 188/371 (50%), Gaps = 22/371 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M ++   RL +DL AL  N+ S+   +G A  A VVK +AYGLG   +A  L   G + F
Sbjct: 1   MSASSTARLNVDLAALSQNYASLKRAAGAAEVAPVVKADAYGLGMAGVAAHLARQGAKTF 60

Query: 61  FVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           FV  + EG+ LR        I+VL G+            L PVI++  Q   +   +   
Sbjct: 61  FVARLAEGLALRTLVGNDPVIYVLDGLT--DPSAFAAQRLRPVINTPDQYQLW---LQGP 115

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                AL +DTG NRLG+   +  D        +   L+L++SHLAC D+P   +N  QL
Sbjct: 116 SEVVAALHIDTGMNRLGVRPDQIADL----PAARHHGLALVMSHLACGDEPGHPMNYQQL 171

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             FR    H+ G+  SL++SSG+ LGP+Y F L RPGI LYGG         +Q V    
Sbjct: 172 MAFRAATDHFPGVARSLSNSSGLYLGPDYGFDLVRPGICLYGGGPFGTAHADIQPVAHLS 231

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARI+ IR+   GE V YG      RD  +A   +GYADG   +L+ L           G 
Sbjct: 232 ARILQIRELKVGESVGYGASFVADRDMTLATIGLGYADGLMRSLAPL-----------GF 280

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             ++G   P+ G+++MD+   D+T  L +    +++I G    LD VA A+GT  Y++L 
Sbjct: 281 VTVQGERRPLTGRVSMDVFTVDVTG-LHVSDRTWVEILGSSQNLDAVATAAGTIGYEVLT 339

Query: 360 RIGTRYAKFYT 370
           R+GTR  + YT
Sbjct: 340 RLGTRVPRHYT 350


>gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
 gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
          Length = 826

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 151/371 (40%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + +    +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 467 LEVNLNAVVDNLNWYRSFMKPETKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 526

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD +L P + S   L    K          P  
Sbjct: 527 GVTLRKNGITSNIMIMNPEM-SSFKTLFDYDLEPEVYSFRLLDALVKAAQKEGITGFPVH 585

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFR 183
           +++DTG +RLG   Q +  +      ++       + SH      D     ++ Q   F 
Sbjct: 586 IKLDTGMHRLGFDPQKDMDELIDRLKHQNAIIPRSVFSHFVGSDADSFDEFSAKQFALFD 645

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +SSGI   P     + R G+ LYG   + NK      V T 
Sbjct: 646 EGSKKLQAAFKHKIIRHIDNSSGIEHFPARQLDMCRLGLGLYGINPRTNKIINN--VSTL 703

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R   AG+ V Y  +  +  DS+IA   IGYADG    L               
Sbjct: 704 KTTILQLRHVPAGDTVGYSRKGSIDHDSVIAAIPIGYADGLNRHLGNRHC---------- 753

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 754 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDVLDTIPYEVL 812

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 813 TTISNRVKRVY 823


>gi|262369752|ref|ZP_06063080.1| alanine racemase [Acinetobacter johnsonii SH046]
 gi|262315820|gb|EEY96859.1| alanine racemase [Acinetobacter johnsonii SH046]
          Length = 356

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 103/363 (28%), Positives = 170/363 (46%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ NA+  ++VK NAYG G +    AL       F V  +EE ++
Sbjct: 8   IDSQALQYNLNRVKQLAPNAKIVSMVKANAYGHGVKDCLAALSE--TDAFGVACLEEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R    +  I ++ G+    E   + +  L  VI    Q+ +     +          ++
Sbjct: 66  IRALGFEQPITLIEGVFSADEMSSVIEQKLECVIHHPQQVDWLLAHKTAYIAQKLKLWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG  + E ++  +    K  G   ++  H A A D    +N  Q  +F  +  
Sbjct: 126 LNSGMNRLGFKVAEIINVINTL--KAEGFTCVLAMHFANA-DADHPLNEQQRAQFLHIKE 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               I AS  +S+ I   P  +F   RPGI LYG +   NK      ++ V+T  A II 
Sbjct: 183 ACSPILASCCNSAAIFKWPELNFDFVRPGIMLYGASPFANKNAHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE V YG      +++ +A+ +IGY DGYP                     I G
Sbjct: 243 LNTIQAGEGVGYGSHFVANQETELAIVSIGYGDGYPRAF-----------PKQNYVAING 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             V ++G++ MDM   D+T  L+ ++G  ++++G +  +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QAVAVVGRVAMDMIAIDVTG-LNAKLGTKVELWGENRLVDDVAEANGTIGYELLCRLSNR 350

Query: 365 YAK 367
             +
Sbjct: 351 PIR 353


>gi|213859876|ref|ZP_03385580.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 320

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/330 (30%), Positives = 149/330 (45%), Gaps = 21/330 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I    L   + +  QL     +          ++
Sbjct: 64  LRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAV-ELAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   I+SH A AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
               G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++  + +
Sbjct: 183 QGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSL 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I +R   AGE V YGG     RD+ + V A+GY DGYP                G    +
Sbjct: 242 IAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLV 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGD 332
            G  VPI+G++ MDM   D+  +     GD
Sbjct: 291 NGREVPIIGRVAMDMICVDLGPNAQDNAGD 320


>gi|149278412|ref|ZP_01884549.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
 gi|149230782|gb|EDM36164.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
          Length = 824

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 154/369 (41%), Gaps = 20/369 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL  N       L    +  A+VK  +YG G  +IA  L    V    V   +E
Sbjct: 465 LEIDLNALSGNLQFYRSKLKPGVKIMAMVKAFSYGSGSFEIANVLQYHKVDYLAVAFTDE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYAL 126
           GV LR       I V+    P   + I    L P I +      F + L      +P  +
Sbjct: 525 GVALRKGGITMPIMVMSP-EPSAFEAIVRYKLEPEIYNTDILNKFLNFLSDTEQQYPVHI 583

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRTL 185
           ++DTG +RLG    +  D      + +  ++    SHL  ++D         QL RF  +
Sbjct: 584 KIDTGMHRLGFEEIDIPDLLMALNSNQKIRVQSSFSHLVGSEDIMHDEFTRHQLSRFTAM 643

Query: 186 ISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
               +          ++++SGI   P+    + R GI +YG    I +S  +Q V   + 
Sbjct: 644 ADTIREGLGYDFIRHISNTSGISRHPDAQLDMVRIGIGMYGYDGGIAQSKGLQPVAILKT 703

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            I  I+     E + YG +  L      A   IGYADGY                  GK 
Sbjct: 704 TITQIKHIKPNETIGYGRKGILPEGGTTATVKIGYADGYDRRFG----------HGVGKM 753

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            IKG +VP +G I MDM M D+T  L ++ GD + +F   + + D+A   GT  Y++L  
Sbjct: 754 LIKGALVPTVGVICMDMCMLDVTG-LDVQNGDEVIVFNGQLSIADLAQQIGTIPYEILTN 812

Query: 361 IGTRYAKFY 369
           I  R  + Y
Sbjct: 813 ISQRVKRVY 821


>gi|315099423|gb|EFT71399.1| alanine racemase [Propionibacterium acnes HL059PA2]
          Length = 375

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 149/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAESTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|312868223|ref|ZP_07728423.1| alanine racemase [Streptococcus parasanguinis F0405]
 gi|311095968|gb|EFQ54212.1| alanine racemase [Streptococcus parasanguinis F0405]
          Length = 370

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 154/378 (40%), Gaps = 25/378 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +     ++DL A+  N   ++    +     AVVK NAYG G   +   L    V  F 
Sbjct: 5   KHRPTVARVDLDAIAFNVQQVSDHIPSQALKYAVVKANAYGHGVVAVTKKL-APQVDGFC 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V++++E +++R    Q  + +L  +      +  + ++   ++S+  L       +    
Sbjct: 64  VSNMDEALEIREEGLQHPLLILGVVPSETVNLAKEHDIRLTVASLAWLVQLLGQEADLSG 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++VD+G  R+G    E +            ++  I +H A AD+        Q + 
Sbjct: 124 LKVHIKVDSGMGRIGFRTIEEIKEAERLLIAAGAEIEGIFTHFATADEADDRKFQAQYQF 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F+ +++  + +      ++S+  L   +  F   R G  +YG       +   + ++  +
Sbjct: 184 FKEVLAALETLPPIVHASNSATSLWHADTIFTAVRLGDVMYGLNPSGSVLALPYEIKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + ++ +++  AG+ + YG          I    IGYADG+   +             
Sbjct: 244 SLVSELVHVKQLEAGQDIGYGATYTTEEPQWIGTIPIGYADGWIREMQNF---------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
                IKG   PI+G+++MD     + + L +  G  + + G     +I   +VA   GT
Sbjct: 294 --HVLIKGEFCPIVGRVSMDQITVRLPEELPL--GTKVTLIGREGEKEITATEVADYRGT 349

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY+++  +  R  + YT
Sbjct: 350 INYEVVCLLSDRIPRDYT 367


>gi|257899464|ref|ZP_05679117.1| alanine racemase [Enterococcus faecium Com15]
 gi|257837376|gb|EEV62450.1| alanine racemase [Enterococcus faecium Com15]
          Length = 374

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 151/380 (39%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  I   A+  N  + +  L       AVVK N YG G  + A A    G   F V
Sbjct: 7   HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 66

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
           ++++EGV+LR       I +L  +      +    +L     +   L   + ++      
Sbjct: 67  SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTREWLQAAAAILEESKLE 126

Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+ DTG  R+G  + +E  +        ++ +   + +H + AD       ++Q
Sbjct: 127 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQADDTYWNLQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233
            ERF  ++     +     +++S+  L        + R G+++YG       + + +P+Q
Sbjct: 187 KERFMEVLKKLSELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 246

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   + +I ++K  AGE + YG          I    IGYADG+   + G        
Sbjct: 247 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   ++G     +G++ MD  M  +     +  G  + + G     +I + DVA  
Sbjct: 302 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 352

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT +Y++   +G R  + Y
Sbjct: 353 LGTIHYEVACGLGQRIPREY 372


>gi|262375308|ref|ZP_06068541.1| alanine racemase [Acinetobacter lwoffii SH145]
 gi|262309562|gb|EEY90692.1| alanine racemase [Acinetobacter lwoffii SH145]
          Length = 356

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 164/360 (45%), Gaps = 23/360 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+  A+  ++VK NAYG G +    AL       F V  ++E ++
Sbjct: 8   IDSAALQYNLNRVKQLAPTAKIVSMVKANAYGHGVKDCLAALSE--TDAFGVACLQEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHPYALQ 127
           +R       I ++ G+    E  I+ + N+  V+    QL +                ++
Sbjct: 66  IRELGYLQPITLIEGVFSADEMPIVIEQNIEVVVHHQAQLDWLLAHKETYIAKDLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG  +    D  H    +    +  +  H A A D    +N  Q+ +F  + +
Sbjct: 126 LNSGMNRLGFKIDVIKDVIHTLKAEGFSCVLAM--HFANA-DAEHPLNDEQIRQFLEIKN 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEARIIL 244
               I AS  +S+ I   P  HF   RPGI LYG T   ++       + V+T  A II 
Sbjct: 183 DCAPILASCCNSAAIYKYPELHFDYVRPGIMLYGATPFADRDVHDLDLKPVMTFTAEIIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           + +  AGE V YG      ++  +A+ +IGY DGYP                     I G
Sbjct: 243 LNEIQAGEHVGYGSTFTADQNMTLAIVSIGYGDGYPRAF-----------PKQNYVAING 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
               ++G++ MDM   D+T  L +++G  ++++G    +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QQTRVIGRVAMDMIAIDVTG-LDVQLGTEVELWGKTRLIDDVAEANGTIGYELLCRLSNR 350


>gi|193215478|ref|YP_001996677.1| alanine racemase [Chloroherpeton thalassium ATCC 35110]
 gi|193088955|gb|ACF14230.1| alanine racemase [Chloroherpeton thalassium ATCC 35110]
          Length = 387

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 165/375 (44%), Gaps = 28/375 (7%)

Query: 11  IDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L++N   + A  G +R   A+VK NAYG    K+APAL   GV DF V ++ E +
Sbjct: 23  ISLGNLRHNARQIKAQIGQSRRLMAIVKANAYGHNAGKVAPALVQEGVSDFGVANINEAI 82

Query: 70  KLRLYT------PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSH 122
            LR           ++I         Q        +   +++         +  + G + 
Sbjct: 83  HLRKALQAAQAREDSQILAFASPLECQMPFYLQHEIDLTVTNFETAKLAEAVSKNHGKNL 142

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++DTG  RLG+  +E               L  I +H + + +        QLE +
Sbjct: 143 TVHLKIDTGMGRLGIQPREGFALARYVEASPYLNLKGIYTHFSDSGE-DLAFTRNQLEIY 201

Query: 183 RTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235
           + L+S ++      +    A+S  I+   + +  + RPGI LYG T    +  +  ++ V
Sbjct: 202 KKLVSEFEHEAKRTVLKHAANSGAIISDNDTYLDMVRPGILLYGYTPAKSLTTALDLRRV 261

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +A ++  +    G  VSYG +   TR + +A  ++GYADGY   LS           
Sbjct: 262 MQFQAHVLFTKWVEKGATVSYGRRWIATRRTRVATVSVGYADGYHRALSN---------- 311

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTN 354
              K  I G +   +G +TMD  M  + +  S++VGD + +FG D +  +D+A   GT  
Sbjct: 312 -KAKVCINGNLYEQIGSVTMDQIMVSLGEDSSVQVGDPVVLFGWDGLGANDLAEQIGTIG 370

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LL  +  R  + +
Sbjct: 371 YELLCAVSPRVKRVF 385


>gi|118594787|ref|ZP_01552134.1| alanine racemase [Methylophilales bacterium HTCC2181]
 gi|118440565|gb|EAV47192.1| alanine racemase [Methylophilales bacterium HTCC2181]
          Length = 358

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 99/374 (26%), Positives = 165/374 (44%), Gaps = 29/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L+      A  +N   + + S N++  AV+K NAYG G  + A AL       F V +
Sbjct: 2   RALKASFHSAAFSSNLKRVKSYSPNSKVMAVLKANAYGHGLIEAARAL--NDADGFSVLT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E ++LR +     + +L G   P + KI     +  VI    Q+ + +++        
Sbjct: 60  LSEAIELREHGFTQHLLLLEGFFKPYEVKICSLMGIGAVIHHAQQIDYINQVKPV-KPID 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V+TG NRLG   ++                 +I++H + AD      +  QL  F 
Sbjct: 119 VHLKVNTGMNRLGFMPKDVDLILKQLEESPYINKIVIMTHFSDADGEKGVAS--QLACFN 176

Query: 184 TLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237
            +    KGI   E S+A+S+ I+  P  HF+  RPGI LYG +   +K      ++ V++
Sbjct: 177 EI----KGIDIYERSVANSAAIIKYPETHFEWVRPGIMLYGASPFDDKTGNDFQLKPVMS 232

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II I+     + V YG          + + A GYADGYP                G
Sbjct: 233 LRSEIIAIQTLEESQSVGYGSVFTAPHKMTVGIVACGYADGYPRHA-----------PSG 281

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G +   +G+++MDM   D++   +  VG  ++++G  + +D+VA  S T  Y+L
Sbjct: 282 TPLMVDGVITQTVGRVSMDMLYVDLSSLPNAGVGSSVELWGKGVLVDEVARQSHTVGYEL 341

Query: 358 LVRI--GTRYAKFY 369
           L  I   +R    Y
Sbjct: 342 LCAISASSRVPMEY 355


>gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 825

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L+AL  N +   + L  + +   ++K N YGLG  ++A  L +  V    V   +E
Sbjct: 465 LEVNLSALVQNLNFYRSYLKQDTKLVCMIKANGYGLGAVEVAKTLQDHRVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125
           GV LR +   A I ++        K IFD  L P + S   L              +P  
Sbjct: 525 GVALRKHGVTANIMIMNPEM-SSFKTIFDYELEPEVYSFRLLEALIEEAEKEGITQYPIH 583

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHL-ACADDPSSHVNSVQLERF 182
           +++DTG +RLG      ++   +   K         + SH      D     ++ Q   F
Sbjct: 584 IKLDTGMHRLGFDPINDIERLISILKKHQNTIIPRSVFSHFVGSDSDHFDDFSAQQFSLF 643

Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
            T     +      I   + +S+GIL  P+    + R G+ LYG   + N+      V +
Sbjct: 644 DTASKQLQSAFTHHILRHINNSAGILHFPDRQLDMCRLGLGLYGINSRDNQIINN--VCS 701

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               I+ + K  + E V Y  +  + R++++A   IGYADG    L   +          
Sbjct: 702 LRTTILQMHKIGSNETVGYSRKGTVERETIVAAIPIGYADGLDRRLGNRNC--------- 752

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G+  P LG I MD+ M D+TD    + GD ++IFG ++ +  ++    T  Y++
Sbjct: 753 -YCLVNGHKAPYLGNICMDVAMIDVTDIP-CKEGDSVEIFGDNLPVTVLSDTLDTIPYEV 810

Query: 358 LVRIGTRYAKFY 369
           L  I  R  + Y
Sbjct: 811 LTSISERVKRVY 822


>gi|253999137|ref|YP_003051200.1| alanine racemase [Methylovorus sp. SIP3-4]
 gi|253985816|gb|ACT50673.1| alanine racemase [Methylovorus sp. SIP3-4]
          Length = 356

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 103/365 (28%), Positives = 165/365 (45%), Gaps = 21/365 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I L AL++N   +   + +ART AVVK N YG G   +A  L       F V  
Sbjct: 2   RPITATIHLAALQHNLRRVRDYAPHARTMAVVKANGYGHGLLNVARGLAE--ADGFAVLR 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E ++LR    Q  + +L G+    E     D  +  V+ +  Q+    +  S  V   
Sbjct: 60  LQEALELRAAGYQQTLLLLEGVFESTELNAAADAGVSIVVHAEHQIAMLEQA-SLPVPIA 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++++TG NRLG   Q                   +++H A AD+     +++Q  RF 
Sbjct: 119 VFVKMNTGMNRLGFVPQAFASAVARLAACPQVSSITLMTHFATADEAPGIASALQ--RFE 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEA 240
              +  +    SLA+S+ IL  P  H    RPGI LYG T           +Q V+  ++
Sbjct: 177 AGAAGMQY-PKSLANSAAILRHPESHADWVRPGIMLYGATPVQSVTAAHFGLQAVMHLQS 235

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I ++    GE + YG      R++ + + A GYADGYP    G           G   
Sbjct: 236 ELIAVQTLPPGESLGYGATFVAERETRVGIVACGYADGYPRHAPG-----------GTPI 284

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G +   LG+++MDM   DITD  + ++G  ++++G  I +D VA A GT  Y+LL  
Sbjct: 285 AVAGQVSKTLGRVSMDMLFVDITDIPAADIGSPVELWGATIPVDAVAEACGTVGYELLCA 344

Query: 361 IGTRY 365
           + +R 
Sbjct: 345 VTSRV 349


>gi|297205120|ref|ZP_06922516.1| alanine racemase [Lactobacillus jensenii JV-V16]
 gi|297149698|gb|EFH29995.1| alanine racemase [Lactobacillus jensenii JV-V16]
          Length = 375

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 148/382 (38%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +++DL A+K N  +  A L    +  AVVK NAYG G  K+A      G   F V
Sbjct: 6   HRPAEVEVDLLAIKKNLQAEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVS 121
             ++E  +LR  +    I VL      +  I    N+     S+  L      L    + 
Sbjct: 66  AVLDEAFELRDASIVDPILVLGVTPANEACIAAAHNISLTAPSLEWLKAADMALAKKDMV 125

Query: 122 HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G S  QE +       N     +  + +H A AD   S     Q++
Sbjct: 126 LKIHLAIDSGMGRIGFSEDQEFIAANEFLRNSTHFIVEGMFTHFASADSADSSYFDYQIK 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232
           RF  L +    K     +A+++  +     H  + R GI LYG     N + P       
Sbjct: 186 RFNHLKNLLSIKPKWIHVANTASSIFDKQIHSDIVRFGIGLYGLNPSSNPASPDLESKIT 245

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            +  ++  + +  ++K  +G  + YG       D  I    +GYADG    LSG   +  
Sbjct: 246 LKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGIIRKLSGFKIK-- 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
                     +     PI+G+I MD  M  + + + +  G  + I+         +   A
Sbjct: 304 ----------VGDNFCPIVGRICMDQLMVLLPEKMPV--GTKVVIYSNKTEDPNSIKKAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y+L   +  R  + Y
Sbjct: 352 DYVDTIHYELACLLSDRLPRIY 373


>gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
 gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
          Length = 833

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 151/377 (40%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL +N +     L  + +   +VK  AYG G  +IA  L    V    V   +E
Sbjct: 466 LEINLGALVHNLNFYREQLPSHTKMMVMVKAFAYGSGSAEIAHLLQFHRVDYLGVAYADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYAL 126
           GV LR       I V+          +   +L P + S      F   L     +    L
Sbjct: 526 GVFLRESGIDLPIMVMNP-SEDTFDKLLQYDLEPEMYSFKVLDEFIHFLKEQQTTAKVHL 584

Query: 127 QVDTGFNRLGLSLQEALDFTH--------NSFNKKLGQLSLIISHLACADDPSS-HVNSV 177
           ++DTG +RLG  ++E                       ++ + SHLA +D+ +    +  
Sbjct: 585 KIDTGMHRLGFVVEEVPRLLQVLQQPDTQQKAPLDYLSIASVFSHLAGSDEATHNAYSQQ 644

Query: 178 QLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q+  F       +      +   + +S GI+  P   F + R GI LYG          +
Sbjct: 645 QITLFEAATKQIETALGYEVIKHILNSPGIVRFPEASFDMVRLGIGLYGIEANQIAQSQL 704

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q++      I  I+    GE V Y  +   +  +  A  AIGYADG+    S        
Sbjct: 705 QSISRLTTTISQIKYLQPGETVGYSRKGVASHTTKTATVAIGYADGFSRAFSNGV----- 759

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                GK  + G  VP++G + MDM M D+T       GD + IF  ++ + D+A +  T
Sbjct: 760 -----GKVMVNGAKVPVIGNVCMDMCMIDVTGV-EATEGDEVIIFNEELSILDLAQSIDT 813

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I  R  + +
Sbjct: 814 IPYEILTNISQRVKRVF 830


>gi|313835050|gb|EFS72764.1| alanine racemase [Propionibacterium acnes HL037PA2]
 gi|314929020|gb|EFS92851.1| alanine racemase [Propionibacterium acnes HL044PA1]
 gi|314970970|gb|EFT15068.1| alanine racemase [Propionibacterium acnes HL037PA3]
 gi|328905717|gb|EGG25493.1| alanine racemase 1 [Propionibacterium sp. P08]
          Length = 375

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 147/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +I+  +          V +V E
Sbjct: 10  AIIDLSAIAANLTEVRKRAGDRKVLFAVKADAYGHGAVEISRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   S+     GV+    +
Sbjct: 70  GQELVESGITLPILKLSPADPWDTNTAITSGMRLTVVDFDTLDAVSRAAVQLGVTAKVHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   +  ++  + +HL  +D P        +++ F   
Sbjct: 130 AVDSGMGRIGLPPECLAELTAAADCAEGIEVEGVFTHLPISDVPEGDEFTHHEIDTFMNA 189

Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAE 239
           +S  +          LA+S  IL        + R GI  YG    ++        V++  
Sbjct: 190 VSQVEADRGPFPLVHLANSGAILGHDLGRTSMVRAGIVGYGYDPDLHADRAALHPVLSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ V YG        + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVNPGDTVGYGRTWTARETTKIATIPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G + PI+G+I MD  M D+    S+ VGD + + G      +  +D+A   GT +Y
Sbjct: 299 VLIGGSVRPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLSANDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  + + 
Sbjct: 359 EITCAISKRVDRRWV 373


>gi|313201238|ref|YP_004039896.1| alanine racemase [Methylovorus sp. MP688]
 gi|312440554|gb|ADQ84660.1| alanine racemase [Methylovorus sp. MP688]
          Length = 356

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 102/365 (27%), Positives = 163/365 (44%), Gaps = 21/365 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I L AL++N   +   + +ART AVVK N YG G   +A  L       F V  
Sbjct: 2   RPITATIHLAALQHNLRRVRDYAPHARTMAVVKANGYGHGLLNVARGLAE--ADGFAVLR 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E ++LR    +  + +L G+    E     D  +  V+ +  Q+    +  S  V   
Sbjct: 60  LQEALELRAAGYRQTLLLLEGVFESAELNAAADAGVSIVVHAEHQIAMLEQA-SLPVPIA 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++++TG NRLG   Q                   +++H A AD+      ++Q  RF 
Sbjct: 119 VFVKMNTGMNRLGFVPQAFASAVARLAACPQVSSITLMTHFATADEAPGIATALQ--RFE 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEA 240
              +  +    SLA+S+ IL  P  H    RPGI LYG T           +Q V+  ++
Sbjct: 177 AGAAGMQY-PKSLANSAAILRHPESHADWVRPGIMLYGATPVQSVTAAHFGLQAVMHLQS 235

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I ++    GE + YG      R++ + + A GYADGYP    G           G   
Sbjct: 236 ELIALQTLPPGESLGYGATFVAERETRVGIVACGYADGYPRHAPG-----------GTPI 284

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G +   LG+++MDM   DITD    ++G  ++++G  I +D VA A GT  Y+LL  
Sbjct: 285 AVAGQVSKTLGRVSMDMLFVDITDIPGADIGSPVELWGATIPVDAVAEACGTVGYELLCA 344

Query: 361 IGTRY 365
           + +R 
Sbjct: 345 VTSRV 349


>gi|329113263|ref|ZP_08242046.1| Alanine racemase, catabolic [Acetobacter pomorum DM001]
 gi|326697404|gb|EGE49062.1| Alanine racemase, catabolic [Acetobacter pomorum DM001]
          Length = 381

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 187/366 (51%), Gaps = 15/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ++L+A+  N+  + +  G    AAVVK +AYGLG  ++AP L  AG + FFV  V+EG
Sbjct: 24  LTVNLSAIAENYRYLKSRLGKTVCAAVVKADAYGLGVAQVAPVLEKAGAEHFFVAHVDEG 83

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
           + LR Y      + VL+G  P   ++    NL PV++S+ Q+    +L +        A+
Sbjct: 84  LALRPYLSSTTSVTVLHGPRPDAAEVCVRNNLRPVLNSLEQIAVLRELAAKIDKPLDVAI 143

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG +R GLS  +      +    +   +SL++SHLACAD P +  N++Q ERF    
Sbjct: 144 QLDTGMSRFGLSEADIHKLAVSPELLEGLSVSLVMSHLACADTPKNPANTMQRERFEAYA 203

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                   SL++SSGI LG  + F L RPG +LYG   +    +P++ VV  +A I+ IR
Sbjct: 204 RMLPKATLSLSASSGIFLGSQFQFDLVRPGAALYGVAPQNEGENPLKPVVGLQAHILQIR 263

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G+ V YG   +      +A  A GY               + +    G  + KGY 
Sbjct: 264 HLSKGDRVGYGLTWQAHGPCRVATIATGY-----------ADGFARAGAAAGCAWYKGYR 312

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PILG+I+MD    D+++     +E    +++      +D VA A GT  Y++L  +G R
Sbjct: 313 LPILGRISMDSMTVDLSEVPEGLLEEDSMVELLNASYGVDAVAKAEGTIGYEVLTSLGRR 372

Query: 365 YAKFYT 370
           Y + YT
Sbjct: 373 YHRVYT 378


>gi|290579829|ref|YP_003484221.1| putative alanine racemase [Streptococcus mutans NN2025]
 gi|254996728|dbj|BAH87329.1| putative alanine racemase [Streptococcus mutans NN2025]
          Length = 371

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 157/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +      + L  +K N   +      A +T AVVK NAYG G  ++A A+    V  F V
Sbjct: 6   HRPTTALVHLDRIKFNIEQVQHHIPKAAKTFAVVKANAYGHGAVQVAKAIQKQ-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P +  +    N+   ++ +                
Sbjct: 65  SNLDEALELRQAGLNDFILILGVLLPEEVALAKKENITITVADLDWFDKVQTENIDLAGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+G+      +       K    ++ I +H A AD+ S+   S QLE F
Sbjct: 125 SVHVKVDSGMGRIGVRSTAEANQLIAGLQKAGATVNGIFTHFATADEASTVKFSQQLEMF 184

Query: 183 RTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237
            TLIS   YK      ++S+  +   +      R GI +YG     N     + ++  + 
Sbjct: 185 TTLISQLDYKPQTVHASNSATSIWHSDTVMNAVRLGIVMYGLNPSGNALELPYEVKPALE 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG+ V YG     ++  +I    +GYADG+   L G            
Sbjct: 245 LTSALVQVKEVQAGDTVGYGATYTASQAEIIGTVPVGYADGWTRDLQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G+   I+G+++MD     +  +  +  G  + + G D    I   DVA    T 
Sbjct: 294 -HVLVNGHYCEIVGRVSMDQITIRLPKAYPL--GTKVTLIGQDGHETISATDVAEKRETI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  I  R  + Y
Sbjct: 351 NYEVLCLISDRVPRKY 366


>gi|167839235|ref|ZP_02465962.1| alanine racemase [Burkholderia thailandensis MSMB43]
          Length = 374

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 154/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+ +N   +   + ++R  +VVK NAYG G E+I PAL  AG     +  
Sbjct: 3   RPIVARIHPDAVAHNLAIVRQKAPSSRVWSVVKANAYGHGIERIYPAL--AGADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI    +    D   L   +     L   +          
Sbjct: 61  LDEAVRVRELGWTKPVLLLEGIFDAADVETADRYRLTVAVHGDEPLKLLTS-SKTARPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          Q+  F 
Sbjct: 120 IQLKMNSGMNRLGYRPDAFRAAWERAATAPSIGRIALMMHFANA---DDGEIDWQMSMFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G E +L++S+ +L  P  H    RPG  LYG +           P++  +T  
Sbjct: 177 AATDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTVT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII ++    GE V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SRIIGVQTLSPGETVGYGRRFAAGRAMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  VG  ++++G  +++DDVA A+GT  Y+L+ 
Sbjct: 285 IAVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSTVELWGEQVRVDDVAQAAGTIGYELMC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|324995181|gb|EGC27093.1| alanine racemase [Streptococcus sanguinis SK678]
 gi|327469131|gb|EGF14603.1| alanine racemase [Streptococcus sanguinis SK330]
 gi|327473513|gb|EGF18933.1| alanine racemase [Streptococcus sanguinis SK408]
 gi|327489061|gb|EGF20856.1| alanine racemase [Streptococcus sanguinis SK1058]
          Length = 369

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   +  IDL A+  N   ++A         AVVK NAYG G  +++       V  F V
Sbjct: 7   HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRH-IEPLVDGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR      +I VL         +     +   ++S+  L             
Sbjct: 66  SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLDWLDLALDAEEDLTGL 125

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            + +++D+G  R+G    +      +           I +H A AD+   H    QL RF
Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQVAGAVAEGIFTHFATADEAEHHKFEAQLARF 185

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237
             ++S    +      ++S+  L          R G  +YG       +   +  ++ ++
Sbjct: 186 HQILSELDNVPSLVHASNSATSLWHRETVLNAVRLGDIIYGLNPSGRVLALPYEFKSALS 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG  V YG          I    +GYADG+   + G D          
Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFD---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               I G   PI+G+++MD     +  +  +  G  + + G      I   DVA   GT 
Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVCLPQAYPL--GTSVVLIGNSGAETITATDVAEKRGTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++  I  R  + Y
Sbjct: 352 NYEVVCLISDRVPRVY 367


>gi|144899038|emb|CAM75902.1| Alanine racemase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 369

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 192/376 (51%), Gaps = 17/376 (4%)

Query: 1   MHSNEFLR--LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M +++     L IDL A+ +NW ++ A + NA  A VVK + YGLG   +A AL  AG  
Sbjct: 1   MTAHDRATGILSIDLDAIADNWRTLAAHAPNAEAAGVVKADGYGLGAAPVARALRKAGCT 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            FFV +++EG+ LR +   ARI VL G+ PG         LIPV++S  Q+  +S   + 
Sbjct: 61  TFFVATIDEGISLRPHVNDARILVLGGVLPGTGADFIGHQLIPVLNSPEQIGLWSGFAAA 120

Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G   P A+ +D+G NRLGL          ++      Q  L++SH+ACAD+    +N  
Sbjct: 121 GGRPLPAAIHIDSGMNRLGLDETAVELLAADNRRLDGIQPVLVMSHMACADERDHAMNRQ 180

Query: 178 QLERFRTLISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           QL+RF  L          SLA+SS I LG +YHF L RPG  LYG     +  +P++  V
Sbjct: 181 QLDRFTVLADRLGVSAPRSLAASSTIFLGADYHFDLIRPGAGLYGINPMPDSPNPLRQTV 240

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               +I+ +R     + V YG   +      +A  A GYADG   +L             
Sbjct: 241 RLHGKILQVRDVDTPQTVGYGASHRFKSKGRVATIACGYADGLFRSLGNR---------- 290

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTN 354
            G G I G  VP++G+I+MD+   D++      V  G  +++ GPD  +D +A  +GT  
Sbjct: 291 -GFGVIGGVKVPVVGRISMDLITLDVSAVAPAHVHAGALVELIGPDHDVDALAAEAGTIG 349

Query: 355 YDLLVRIGTRYAKFYT 370
           Y++L  +G RY + Y+
Sbjct: 350 YEILTSLGRRYLRDYS 365


>gi|269926050|ref|YP_003322673.1| alanine racemase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789710|gb|ACZ41851.1| alanine racemase [Thermobaculum terrenum ATCC BAA-798]
          Length = 376

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 162/374 (43%), Gaps = 21/374 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              +++DL A+++N          ++  AVVK +AYG G  +I+  + +AG     V  V
Sbjct: 12  PTWVEVDLNAIRHNLRLYLDKCPGSKVIAVVKGDAYGHGIIEISKTVLDAGAWGLGVARV 71

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-YSKLMSCGVSHPY 124
            EG+ LR     A I VL      + K    ++L   +S+   L +  +     G     
Sbjct: 72  SEGLLLRSSGIDAPIIVLGYSSEQEIKQAVASDLAISVSTEKMLDWILATAREVGRIPRI 131

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG  RLG+  ++A    H         L  I +H A ADDP   +   QL  F+ 
Sbjct: 132 HLEVDTGMRRLGVKFEDAAQIVHYIHGTNSVYLEGIFTHFASADDPEGFLFKRQLSMFQD 191

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           LI   +           A+S+  L  P  HF   R GI LYG      K++P++  +   
Sbjct: 192 LIHLIRERGEVPPIVHAANSAAALYAPESHFDAVRIGIGLYGVQPLQFKTYPLRPAMALR 251

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  +    AGE VSYG           AV   GYADGYP  LS             G+
Sbjct: 252 SVVARVLDVHAGEGVSYGHTYVAKESHRAAVIPCGYADGYPRILSN-----------KGE 300

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK--LDD--VALASGTTNY 355
             + G   P++G++ MD  +  + + +   VGD + + G      +D   +A  +GT  Y
Sbjct: 301 VIVSGIRCPVIGRVCMDNLIVKLPEGVDARVGDAVTLIGSQGSEAVDAGYLARLAGTIPY 360

Query: 356 DLLVRIGTRYAKFY 369
           ++L  IG R  K Y
Sbjct: 361 EILCGIGRRPEKIY 374


>gi|260102331|ref|ZP_05752568.1| alanine racemase [Lactobacillus helveticus DSM 20075]
 gi|260083864|gb|EEW67984.1| alanine racemase [Lactobacillus helveticus DSM 20075]
          Length = 376

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 145/381 (38%), Gaps = 30/381 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               +K++L A++ N  + M  L  N +  AVVK N YG G  ++A      G   F V 
Sbjct: 7   RPAVVKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
            ++E ++LR       I VL  + P    I    N+   + ++  L    K L    +  
Sbjct: 67  ILDEALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDAEKYLAKENLQL 126

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L +D+G  R+G +  +     +    N     +  + +H A AD         Q E+
Sbjct: 127 KIHLGIDSGMGRIGFNEDDEFVAANKFLENNDNFFIEGMFAHFASADSDDETYFKHQCEK 186

Query: 182 FRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------- 232
           F+ + S    K     + +++  +        L R GI +YG     N S P        
Sbjct: 187 FKHMKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIEL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +  E+ +  ++    G+ V YG       D++I    +GYADG+     G       
Sbjct: 247 EPALLFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348
                 K  +     PI+G+I MD  M  +   + +  G  + I   +      +   A 
Sbjct: 301 ------KVKVGDEYCPIVGRICMDQFMVKMPKKMLV--GTKVVIISNNPSDPNNIKAAAD 352

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T +Y++   +  R  + Y
Sbjct: 353 YVDTIHYEVACLLNDRLPRVY 373


>gi|91215530|ref|ZP_01252501.1| alanine racemase [Psychroflexus torquis ATCC 700755]
 gi|91186482|gb|EAS72854.1| alanine racemase [Psychroflexus torquis ATCC 700755]
          Length = 367

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 99/377 (26%), Positives = 167/377 (44%), Gaps = 21/377 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M      RL+IDL AL+ N+  + + LS   +   VVK  AYG     I   L   GVQ 
Sbjct: 1   MSKVLETRLEIDLQALEYNYKLLKSYLSTKTKIMGVVKAFAYGTDSIIIGKHLVKIGVQH 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  +EEGV+LR    +A I V Y     + + + D  L P + +   L    + ++  
Sbjct: 61  LAVAYIEEGVRLRKAGVEAPILVFYP-QLEEIQKLIDFQLTPSVYNHRFLEGLCEELALH 119

Query: 120 V--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNS 176
              S    L+++TG NRLG  + +      +   ++  ++  + +HLA + +        
Sbjct: 120 EIDSFGIHLKINTGLNRLGFEIDDLNTILQHLKAERKIKMVGLFTHLAASGNKDEVEFTK 179

Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q+ +F      ++       E+ + +SSGIL  P+  + + R GI+LYG  +   +   
Sbjct: 180 GQISKFEQARQFFENHLPYIFESHICNSSGILNYPDAEYDMVRAGIALYGYGNNPKEHKM 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V + +  I  +R    G+ V Y  + K  R++ IA   +GYADG   +         
Sbjct: 240 LKAVASLKTVIAQLRMIQKGDSVGYERKFKAERETKIATLPLGYADGISRSFGN------ 293

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                  +  I     PI+G + MD  M D+T     E GD ++IFG +  + D  +   
Sbjct: 294 ----GKAQVLINHQKAPIIGNVCMDTLMLDVTGI-DCEEGDEVEIFGKNHTVLDFDIEQQ 348

Query: 352 TTNYDLLVRIGTRYAKF 368
           T  Y+++ RI  R  + 
Sbjct: 349 TIPYEVITRISQRVTRV 365


>gi|120437675|ref|YP_863361.1| alanine racemase [Gramella forsetii KT0803]
 gi|117579825|emb|CAL68294.1| alanine racemase [Gramella forsetii KT0803]
          Length = 369

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 104/376 (27%), Positives = 166/376 (44%), Gaps = 21/376 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M   +   L+I+L  L +N+  + + +   A+  +VVK +AYG    +IA  L   G   
Sbjct: 1   MPEAKETVLEINLGNLAHNYRFLRSKTDKEAKFLSVVKAHAYGSDSVEIAKKLEELGTDY 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
           F V  VEEG++LR       I VL+   P   + I +  L P + S   L  +  L    
Sbjct: 61  FAVAYVEEGIRLRENGISKPILVLHP-QPSHFEEIIEHCLEPNLYSQKTLESFVSLAERL 119

Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNS 176
              ++P  ++++TG NRLG    E         N    +++ + SHLA ++D        
Sbjct: 120 NQKNYPVHIKLNTGLNRLGFDQSEIPRVFETIKNTNSIKIASVFSHLAASEDWQEREFTL 179

Query: 177 VQLERFRTLI-SHYKGIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q++ FR +     + ++      + ++SG++  P   F + R GI LYG ++       
Sbjct: 180 SQIDLFRKMTWQLIENLDYEPLLHICNTSGVINYPKAAFSMVRTGIGLYGYSNDKTIDPH 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V   +  I  IRK   G  V Y    K  ++S IA   IG+ADG         +   
Sbjct: 240 LKPVGKLKTIISQIRKLDPGASVGYNRAFKTEKESKIATLPIGHADGINRIYGKQKAG-- 297

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                    F+ G   PI+G + MD+ M D+T     E GD + IFG      D A A G
Sbjct: 298 --------VFVNGKYAPIVGNVCMDIIMIDVTGI-DCEEGDEVIIFGGPQHPVDFARAGG 348

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y+L+  I  R  +
Sbjct: 349 TISYELITGIQRRVTR 364


>gi|24380196|ref|NP_722151.1| alanine racemase [Streptococcus mutans UA159]
 gi|81845200|sp|Q8DSF4|ALR_STRMU RecName: Full=Alanine racemase
 gi|24378201|gb|AAN59457.1|AE015010_6 putative alanine racemase [Streptococcus mutans UA159]
          Length = 371

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 157/376 (41%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +      + L  +K N   +       A+T AVVK NAYG G  ++A A+    V  F V
Sbjct: 6   HRPTTALVHLDRIKFNIEQVQHHIPKSAKTFAVVKANAYGHGAVQVAQAIQKQ-VDGFCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P +  +    N+   ++ +                
Sbjct: 65  SNLDEALELRQAGLNDFILILGVLLPEEVALAKKENITITVADLDWFDKVQTENIDLAGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VD+G  R+G+      +       K    ++ I +H A AD+ S+   S QLE F
Sbjct: 125 SVHVKVDSGMGRIGVRSTAEANQLIAGLQKAGATVNGIFTHFATADEASTVKFSQQLEMF 184

Query: 183 RTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237
            TLIS   YK      ++S+  +   +      R GI +YG     N     + ++  + 
Sbjct: 185 TTLISQLDYKPQTVHASNSATSIWHSDTVMNAVRLGIVMYGLNPSGNALELPYEVKPALE 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ +++  AG+ V YG     ++  +I    +GYADG+   L G            
Sbjct: 245 LTSALVQVKEVQAGDTVGYGATYTASQAEIIGTVPVGYADGWTRDLQGF----------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G+   I+G+++MD     +  +  +  G  + + G D    I   DVA    T 
Sbjct: 294 -HVLVNGHYCEIVGRVSMDQITIRLPKAYPL--GTKVTLIGQDGHETISATDVAEKRETI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  I  R  + Y
Sbjct: 351 NYEVLCLISDRVPRKY 366


>gi|116628941|ref|YP_814113.1| alanine racemase [Lactobacillus gasseri ATCC 33323]
 gi|238853540|ref|ZP_04643912.1| alanine racemase [Lactobacillus gasseri 202-4]
 gi|282852616|ref|ZP_06261958.1| alanine racemase [Lactobacillus gasseri 224-1]
 gi|311111249|ref|ZP_07712646.1| alanine racemase [Lactobacillus gasseri MV-22]
 gi|122274061|sp|Q046E7|ALR_LACGA RecName: Full=Alanine racemase
 gi|116094523|gb|ABJ59675.1| Alanine racemase [Lactobacillus gasseri ATCC 33323]
 gi|238833836|gb|EEQ26101.1| alanine racemase [Lactobacillus gasseri 202-4]
 gi|282556358|gb|EFB61978.1| alanine racemase [Lactobacillus gasseri 224-1]
 gi|311066403|gb|EFQ46743.1| alanine racemase [Lactobacillus gasseri MV-22]
          Length = 376

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 149/384 (38%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V
Sbjct: 6   HRPAVVKVNLGAIKRNIENEMQHLEPGQKMLAVVKANGYGHGAVEVAKVADQIGAAGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I    ++   + ++  L    K L +  + 
Sbjct: 66  AILDEALELRRADITKTILVLGVVSPEYAPIAAANDISLTVPNLEWLKEAEKYLENSDLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G +   + +       N     +  + +H A AD         Q E
Sbjct: 126 LKIHLGIDSGMGRIGFNEDKDFIAANKFLENNDNFYIEGMFAHFASADSSDETYFKHQCE 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232
           +F  + S    K     + +++  +        L R GI +YG     N + P       
Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHNGIKSDLVRFGIGIYGLNPSSNPNSPDLKSKIA 245

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
               ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G      
Sbjct: 246 LDPALSFESELTHVKTIHQGDGVGYGSTFVADKDTIIGTVPVGYADGFIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV----- 346
                  K  +     PI+G+I MD  M ++   + +  G  + I   +   DD+     
Sbjct: 301 -------KVKVGNTYCPIVGRICMDQFMVEMPKEMPL--GTKVVIISDNP--DDLNNIKA 349

Query: 347 -ALASGTTNYDLLVRIGTRYAKFY 369
            A    T +Y++   +  R  + Y
Sbjct: 350 AADYVDTIHYEVACLLNDRLPRVY 373


>gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289]
 gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289]
          Length = 826

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 150/371 (40%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + L    +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 467 LEVNLNAVVDNLNWYRSFLKPETKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 526

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD +L P +     L    K          P  
Sbjct: 527 GVTLRKNGITSNIMIMNPEM-SSFKTLFDYDLEPEVYCFRLLDALVKAAQKEGITGFPVH 585

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFR 183
           +++DTG +RLG   Q +  +      ++       + SH      D     ++ Q   F 
Sbjct: 586 IKLDTGMHRLGFDPQKDMDELISRLKHQNAIIPRSVFSHFVGSDADSFDGFSARQFALFE 645

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R G+ LYG   + NK      V T 
Sbjct: 646 EGSGKLQSAFKHKIIRHMDNSAGIEHFPERQMDMCRLGLGLYGINPRTNKIINN--VSTL 703

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R   AG+ V Y  +  +  DSLIA   IGYADG    L               
Sbjct: 704 KTTILQLRHVPAGDTVGYSRKGTIEHDSLIAAIPIGYADGLNRHLGNRHC---------- 753

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 754 YCLVNGKKAAYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDVLDTIPYEVL 812

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 813 TTVSNRVKRVY 823


>gi|160895760|ref|YP_001561342.1| alanine racemase [Delftia acidovorans SPH-1]
 gi|226711039|sp|A9BR02|ALR_DELAS RecName: Full=Alanine racemase
 gi|160361344|gb|ABX32957.1| alanine racemase [Delftia acidovorans SPH-1]
          Length = 367

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 151/375 (40%), Gaps = 29/375 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL++N   +     +A+  AVVK NAYG G E +  AL   G   F +  
Sbjct: 3   RPILATIHSAALRHNLERVRQAVPDAKLWAVVKANAYGHGIENVFEALR--GADGFAMLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R    +  I +L G+  P   ++    ++   +    Q+ + +   +    H 
Sbjct: 61  LAEAERVRQLGWRGPILLLEGVFEPRDLELCSRLSIWHAVHCDAQIDWLAAHKTQN-GHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERF 182
             L++++G NRLG + +               +    ++H + AD        S QL+RF
Sbjct: 120 VFLKMNSGMNRLGFTPERYRAAWARLNALPQVEEISFMTHFSDADAGAGQPGISAQLQRF 179

Query: 183 RTLISHYKGIEASLASSSGILL---GPNYHFQLTRPGISLYGGTD----KINKSHPMQTV 235
                   G E S+ +S+  L             RPGI LYG +            +Q  
Sbjct: 180 HDATRDLPG-ERSVGNSAATLRQGDDALVRCDWVRPGIVLYGSSPDYPQHTAAHWDLQPT 238

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            T  +RII +++   G+ V YG +        +   A GYADGYP               
Sbjct: 239 QTLSSRIIGVQQLTEGQSVGYGSRFTAEGPLRLGTVACGYADGYPRHCG----------- 287

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALAS 350
            G    + G     LG ++MDM   D+T      +G  + ++G       + +D+VA A+
Sbjct: 288 TGTPVLVNGVRTRTLGCVSMDMLAVDLTPVPDAGMGSEVTLWGRASNGAVLPIDEVAEAA 347

Query: 351 GTTNYDLLVRIGTRY 365
           GT  Y+L+  +  R 
Sbjct: 348 GTLGYELMCAVAPRV 362


>gi|251783257|ref|YP_002997562.1| alanine racemase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391889|dbj|BAH82348.1| alanine racemase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 366

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S+        RT AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENVASVQENIPLGVRTYAVVKADAYGHGAVQVSKALLPQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + ++     +   ++S+  L    +        
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELELAITRQVTVTVASLEWLAMAKQEWPDLKGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++D+G  R+GL     +D           ++  I +H A AD+  +     QL  F
Sbjct: 125 KVHIKIDSGMGRIGLRSVTEVDNLIAGLKSMRAEVEGIFTHFATADEADTVKFEQQLTFF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
             L+            ++S+  L      F   R GI +YG      ++    P++    
Sbjct: 185 TNLVDQLADKPSLVHASNSATSLWHSETIFNAVRLGIVMYGLNPSGSELALPFPLKEAFN 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ +++   GE V YG   K      +    IGYADG+   + G            
Sbjct: 245 LESVLVHVKEIAPGETVGYGATYKAQTSEYVGTVPIGYADGWTRDMQGFT---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               ++G    I+G+++MD     +  +  +  G  + + G D    I   D+A    T 
Sbjct: 295 --VLVEGQPCEIIGRVSMDQMTIRLPRAYPL--GTKVTLIGQDQEKVISTTDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRVPRVY 366


>gi|218532193|ref|YP_002423009.1| alanine racemase [Methylobacterium chloromethanicum CM4]
 gi|218524496|gb|ACK85081.1| alanine racemase [Methylobacterium chloromethanicum CM4]
          Length = 342

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 122/353 (34%), Positives = 185/353 (52%), Gaps = 14/353 (3%)

Query: 18  NNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ 77
            NW ++ A +  A   AVVK +AYG G   +APAL+ AG + FFV  + EG+  R   P+
Sbjct: 3   ANWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKMLPE 62

Query: 78  ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137
           A ++VL G+ PG  +      L PV+    +L  +++ M  G   P AL VDTG NRLGL
Sbjct: 63  AALYVLNGLPPGHAEAFRAHRLRPVLGDAQELAEWAEAMQGG--GPAALHVDTGMNRLGL 120

Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           S+ EAL    +    + G + L++SHL  A+ P   +N+ Q   F  + + +  + ASLA
Sbjct: 121 SVAEALALAGDPVIARAG-IDLVMSHLVSAELPDDPLNARQAADFARVRAAFPQMRASLA 179

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
           +SSG  L  +    L RPG +L+GG     + +PM+ VV  EA I+ +R   AG    Y 
Sbjct: 180 NSSGTCLANDARHDLLRPGYALFGGNPDPGQPNPMRPVVRLEATILQVRDVEAGATCGYN 239

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
            + +      +A  ++GYADGYP + S             G   + G   PI+G I+MD+
Sbjct: 240 ARWQAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGMPCPIVGLISMDL 288

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            + D+TD+     G    + G  + +D V  A+GT  Y++L  +G+RY + Y 
Sbjct: 289 IILDVTDASQARRGGTATLIGDSLDIDTVGQAAGTIGYEILTSLGSRYVRNYV 341


>gi|83311194|ref|YP_421458.1| alanine racemase [Magnetospirillum magneticum AMB-1]
 gi|82946035|dbj|BAE50899.1| Alanine racemase [Magnetospirillum magneticum AMB-1]
          Length = 409

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 136/364 (37%), Positives = 198/364 (54%), Gaps = 14/364 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ID+ A+  NW  ++AL   A  +AVVK + YGLG ++IAPAL+ AG + FFV  V EG
Sbjct: 49  LTIDVAAIVANWKRLSALVAPAEASAVVKADCYGLGMDRIAPALFAAGCRSFFVACVNEG 108

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQ 127
           + LR   P A I VL G   G E       LIPV++S+ Q+T ++     G   P  A+ 
Sbjct: 109 IALRRLLPGAMIHVLSGPMGGDEAEFAAHGLIPVLNSLSQMTGWASFAKKGSGAPAVAIH 168

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLGLS  E              +  L++SHLACADD  S +N+ QL   R L S
Sbjct: 169 IDTGMSRLGLSEPELERLAAKPEILAAMRPILVMSHLACADDSDSPMNARQLTTLRRLAS 228

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
           H   +  S+A+SSGI LG  +H  + RPG +LYG      + +PM  V+  E +I+ +R 
Sbjct: 229 HLPALPQSIAASSGIFLGRGFHLGMVRPGAALYGLNPMPGRPNPMSQVIKLEGKIVQVRD 288

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             + + V YG   ++     +A+ A+GYADG+  +LS             G G I G  V
Sbjct: 289 VDSPQTVGYGATHRVEGKRRLAIVAVGYADGWFRSLSNR-----------GHGMIGGVKV 337

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++MD+T FD+TD    S   G  IQ+ GP    D +A  + T  Y++L  +G R+
Sbjct: 338 PVVGRVSMDLTTFDVTDVPVESAHPGGLIQLIGPGYGPDHLAAEADTIGYEVLTALGRRH 397

Query: 366 AKFY 369
            + +
Sbjct: 398 LRRW 401


>gi|154483679|ref|ZP_02026127.1| hypothetical protein EUBVEN_01383 [Eubacterium ventriosum ATCC
           27560]
 gi|149735589|gb|EDM51475.1| hypothetical protein EUBVEN_01383 [Eubacterium ventriosum ATCC
           27560]
          Length = 395

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 156/377 (41%), Gaps = 28/377 (7%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +++L A+  N   M   +        V+K + YG G   IA AL N     + V +  E
Sbjct: 12  AEVNLDAIIKNIEMMREKIKPETGIVGVIKTDGYGHGAVPIAKALENE-CVGYAVATAWE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126
           G  LR +     +++L  +      ++ +  ++P I +      +S   +    +  + +
Sbjct: 71  GHNLRRHGIDKPLYILGVVPENLCDLVINEEMLPPIFTYKMAKAFSDHAVKLNKTVKFNI 130

Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            VDTG +R+G    +EA++           ++    +H A AD         Q + +   
Sbjct: 131 AVDTGMSRIGYIPSEEAVNEVVEISKLPNVEIESAFTHFAKADYVDKSFAEKQFKEYNDF 190

Query: 186 ISHYK----GIEAS-LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVT 237
           I+  +     I     A+S+ ++  P     ++R GIS+YG                 ++
Sbjct: 191 IAKVESKGVKIPIHQCANSAAMMEMPETSLTISRAGISMYGLYPSEEMDKDNMKLIPAMS 250

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ ++    G  VSYG      +   IA   +GY DGYP  LS             
Sbjct: 251 IYSHVVYVKNIEKGRGVSYGQTFVADKPMTIATIPVGYGDGYPRNLSN-----------K 299

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G    ILG++ MD  M D+T  + ++ GD + + G D    I +DD+A  +GT 
Sbjct: 300 GYVLINGKKCNILGRVCMDQFMVDVTG-MDVKEGDKVTLAGKDGSEEILIDDLAALAGTF 358

Query: 354 NYDLLVRIGTRYAKFYT 370
           NY+ +  +G R  + + 
Sbjct: 359 NYEFVCDLGKRVPRVFV 375


>gi|205372263|ref|ZP_03225077.1| alanine racemase [Bacillus coahuilensis m4-4]
          Length = 367

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 144/355 (40%), Gaps = 25/355 (7%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L+ +    AVVK N YG G  ++A A   AG     V  ++E + LR +     I VL  
Sbjct: 2   LTDDVEAFAVVKANGYGHGDIQVAKAALQAGANGIAVAFLDEAINLREHGVTEPILVLGA 61

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEAL-D 144
             P   ++  +  +   +     +                ++ DTG NRLGL   EAL  
Sbjct: 62  TRPEYARVAAEKGISLTVYEESWIQEVKHFTPFTNPLALHIKCDTGMNRLGLKSVEALMR 121

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA--SLASSSGI 202
                 +     L  + +H A +D+        Q+  F   +   K         +S G 
Sbjct: 122 MEEEIESNSSLVLEGVFTHFATSDEIERSYTKRQIALFHDYLHALKKRPRYVHAGNSGGA 181

Query: 203 LLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALAGELVSYGG 258
           L      F + R GI++YG T     +H +      +++   +I+ I++   GE +SYG 
Sbjct: 182 LRFSEAKFNMVRIGIAMYGLTPSPEITHELTVSLSPIMSIHTKIVHIKELPKGEKISYGA 241

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
             +   +  IA   IGYADG+   L G             +  ++G  VPI+G+I MD  
Sbjct: 242 TYETQDNEWIATIPIGYADGWLRKLQGQ------------EVLVEGERVPIVGRICMDQC 289

Query: 319 MFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           M  +     + VG  + + G      I ++++A    T NY++   I TR  + Y
Sbjct: 290 MIKLP--REVPVGTIVTLIGTQGSETITMEEIADKMDTINYEVPCIISTRVPRVY 342


>gi|241113131|ref|YP_002972966.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861339|gb|ACS59005.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 377

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 186/365 (50%), Gaps = 15/365 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  + ++  + R  AVVK +AYGLG E++   LY+ G + FFV    E 
Sbjct: 23  LTIDLAALGRNYRKLVSMLASVRAGAVVKADAYGLGAERVGRTLYSEGCRHFFVAQFVEA 82

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126
           ++LR      A+IFVL G+ PG E    +  ++PV++S+ Q   +S          P  L
Sbjct: 83  LRLRPALAHDAQIFVLNGLQPGNEIACAEMGVVPVLNSLAQWRQWSTAARILKRCLPAVL 142

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLG   +E  +           ++  I+SHLA ADD  S  N  Q+     + 
Sbjct: 143 QFDTGMSRLGFPEEERAELAAALSGSTNVEILFIMSHLASADDMDSDQNGEQIAEMSRIA 202

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             + G + S A+S G+ LG  YH  L RPGI+LYGG     + +PM+ VV+    ++  R
Sbjct: 203 DEFPGFDISFANSGGVFLGDPYHGVLARPGIALYGGAPNAGEKNPMEPVVSLNVAVVQTR 262

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  V YGG     R++ +A  A GYADG P  L              G  + KG  
Sbjct: 263 TVPAGAKVGYGGAHVTQRETRLATIAAGYADGLPRCLGDR-----------GAVYFKGIR 311

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PI+G+++MD    DI+      +  G  +++ G    L+D+A  +GT +Y++L  +G R
Sbjct: 312 LPIVGRVSMDSATVDISALPEGALTFGSLVEVLGRHQTLEDIACDAGTISYEILTGLGDR 371

Query: 365 YAKFY 369
           Y + Y
Sbjct: 372 YDRQY 376


>gi|227888877|ref|ZP_04006682.1| alanine racemase [Lactobacillus johnsonii ATCC 33200]
 gi|227850570|gb|EEJ60656.1| alanine racemase [Lactobacillus johnsonii ATCC 33200]
          Length = 376

 Score =  352 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 144/384 (37%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V
Sbjct: 6   HRPAVVKVNLGAIKRNLENEMEHLEPGQKMLAVVKANGYGHGAVEVARVADKVGTAGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I    N+   + ++  L    K L    + 
Sbjct: 66  AILDEALELRRADITKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKEAEKYLKDANLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L +D+G  R+G    E  DF        N     +  + +H A AD         Q
Sbjct: 126 LKIHLGIDSGMGRIGF--NEYADFIAANEFLENNDNFFIEGMFAHFASADSSDETYFKHQ 183

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---- 232
            E+F  + S    K     + +++  +        L R GI +YG     N + P     
Sbjct: 184 CEKFNHMKSLLTVKPKWIHVDNTAASIFHNGIKSDLVRFGIGIYGLNPSSNPNSPDLKSN 243

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  ++ E+ +  ++    G+ V YG       D++I    +GYADG+     G    
Sbjct: 244 IPLEPALSFESELTHVKTIHQGDGVGYGSTFVADEDTIIGTVPVGYADGFIRKFQGF--- 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDD 345
                    K  +     PI+G+I MD  M  +   + +  G  + I          +  
Sbjct: 301 ---------KVKVGDTYCPIVGRICMDQFMVKMPKKMPV--GTKVTIISSNPNDQNNIKA 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T +Y++   +  R  + Y
Sbjct: 350 AADYVDTIHYEVACLLNDRLPRVY 373


>gi|152980345|ref|YP_001353215.1| alanine racemase [Janthinobacterium sp. Marseille]
 gi|166968413|sp|A6SY68|ALR_JANMA RecName: Full=Alanine racemase
 gi|151280422|gb|ABR88832.1| alanine racemase [Janthinobacterium sp. Marseille]
          Length = 359

 Score =  352 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 160/366 (43%), Gaps = 20/366 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   ID+ AL++N     A + +++  AVVK NAYG G E+       A      +  
Sbjct: 3   RPLIATIDIAALRSNLALAKARAPHSKAWAVVKANAYGHGLERGMRGF--AAADGLGLIE 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++   +LR      RI +L G     + K++ +  L  VI    QL    +         
Sbjct: 61  LDAAARLRELGWNKRILLLEGFFDASDTKLLAEHRLDTVIHCEEQLLMLEQA-KLRTQID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV--NSVQLER 181
             L++++G NRLG +                 +    ++H A A+DP + V     Q+ R
Sbjct: 120 VHLKLNSGMNRLGFTPARYRAAYERLRAIPAVRHISFVTHFANAEDPDNPVLPVQEQVRR 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAE 239
           F+       G E SLA+S+  LL P       RPGI LYG T   +  +   ++  ++  
Sbjct: 180 FKEATRDLPG-EKSLANSATDLLHPAAAADWIRPGIMLYGATPGAQSAEQFGLRAAMSLH 238

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++  +AG+ V YG     T    I V A GYADGYP                G  
Sbjct: 239 SEIIGVQHIVAGDAVGYGSAFVATAPMTIGVVACGYADGYPRHA-----------PSGTP 287

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T      +G  + ++G  + +D+VA A+GT  Y+L+ 
Sbjct: 288 VIVDGVKTRMVGRVSMDMITVDLTPVAKPRIGSKVTLWGASLPIDEVANAAGTVGYELMC 347

Query: 360 RIGTRY 365
            +  R 
Sbjct: 348 GLAPRV 353


>gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
 gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
          Length = 826

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 150/371 (40%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + L    +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 467 LEVNLNAVVDNLNWYRSFLKPETKLVCMIKADAYGAGAAEIAKTLQDHRVDYLAVAVADE 526

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD +L P +     L    K          P  
Sbjct: 527 GVTLRKNGITSNIMIMNPEM-SSFKTLFDYDLEPEVYCFRLLDALVKAAQKEGITGFPVH 585

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFR 183
           +++DTG +RLG   Q +  +      ++       + SH      D     ++ Q   F 
Sbjct: 586 IKLDTGMHRLGFDPQKDMDELISRLKHQNAIIPRSVFSHFVGSDADSFDDFSARQFALFE 645

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R G+ LYG   + NK      V T 
Sbjct: 646 EGSGKLQSAFKHKIIRHMDNSAGIEHFPERQMDMCRLGLGLYGINPRTNKIINN--VSTL 703

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R   AG+ V Y  +  +  DSLIA   IGYADG    L               
Sbjct: 704 KTTILQLRHVPAGDTVGYSRKGTVEHDSLIAAIPIGYADGLNRHLGNRHC---------- 753

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 754 YCLVNGKKAAYVGNICMDVAMVDVTGI-DCKEGDSVEIFGDHLPVTVLSDVLDTIPYEVL 812

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 813 TTVSNRVKRVY 823


>gi|322378393|ref|ZP_08052847.1| alanine racemase, biosynthetic (alr) [Helicobacter suis HS1]
 gi|322380074|ref|ZP_08054330.1| biosynthetic alanine racemase [Helicobacter suis HS5]
 gi|321147481|gb|EFX42125.1| biosynthetic alanine racemase [Helicobacter suis HS5]
 gi|321149149|gb|EFX43595.1| alanine racemase, biosynthetic (alr) [Helicobacter suis HS1]
          Length = 389

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 168/391 (42%), Gaps = 34/391 (8%)

Query: 1   MHSNEFL----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M +N  L     ++ID  AL +N+  ++ ++      AVVK NAYG+G  + +      G
Sbjct: 10  MSTNPLLSRASYIEIDTKALAHNFKVISEVADGMAIMAVVKANAYGVGALEASRVFIEQG 69

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-L 115
                V + EE +++RL+     I +L        + +   ++   + S  Q  ++S+  
Sbjct: 70  ATYLGVATYEEALEVRLHFASIPILILGFTPTNMAEDLIKNHITQTLFSYEQACYFSQVA 129

Query: 116 MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           +S        +++DTG +RLG    Q++ +        K  ++  I +H + AD      
Sbjct: 130 LSLKQKLKVHIKIDTGMSRLGFFPTQQSANTIAKIAQLKGLEVEGIFTHHSNADSLYKGY 189

Query: 175 NSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--- 226
            ++Q ERF   +     +        +A+S+  +  PNY   + R G++LYG    I   
Sbjct: 190 ATMQAERFIEFLDLLDQLGLSFKYRHMANSAATISMPNYGLDMARVGLALYGLHPSIYTQ 249

Query: 227 ----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                K   ++ V+T +A+I+ +++  AG L+ YG        + + V  +GY DG+   
Sbjct: 250 DALLKKGFELKNVLTLKAQIVSLKEIPAGRLIGYGEDFYCLEPTRVGVLPLGYGDGFSKV 309

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK 342
           L                G + G  +PI+G + MD    D+  ++  + GD + + G    
Sbjct: 310 LGN-----------KAWGLLHGKKIPIIGGVCMDQCFVDLG-AIQAKEGDTVILLGDSKS 357

Query: 343 ----LDDVALASGTTNYDLLVRIGTRYAKFY 369
                 D+A   G  NY+ +  +  R  + Y
Sbjct: 358 GAMGAGDIAKILGIINYEAITMLTKRLPRVY 388


>gi|293380353|ref|ZP_06626424.1| alanine racemase [Lactobacillus crispatus 214-1]
 gi|290923036|gb|EFD99967.1| alanine racemase [Lactobacillus crispatus 214-1]
          Length = 376

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 148/384 (38%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A++ N  + M  L+   +  AVVK NAYG G  ++A      G     V
Sbjct: 6   HRPAVVKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGAAGLCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I    N+   I ++  L    K L    + 
Sbjct: 66  AILDEALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLEKEQLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + VD+G  R+G +  E  DF        N     +  + +H A AD         Q
Sbjct: 126 LKVHIGVDSGMGRIGFNEDE--DFIAANKFLQNNDNFYVEGMFAHFASADSADDTYFKHQ 183

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---- 232
           +E+F  + S    K     + +++  +   +      R GI +YG     N   P     
Sbjct: 184 VEKFAHMRSLLTVKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDLKSS 243

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G    
Sbjct: 244 ISLEPALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF--- 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD---- 345
                    K  +     PI+G+I MD  M  +   + +  G  + I   D    +    
Sbjct: 301 ---------KVKLGDEYCPIVGRICMDQFMVKMPKKMPL--GTKVVIISNDPTAPNNIKA 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T +Y++   +  R  + Y
Sbjct: 350 AADYVDTIHYEVACLLNDRLPRVY 373


>gi|269128462|ref|YP_003301832.1| alanine racemase [Thermomonospora curvata DSM 43183]
 gi|268313420|gb|ACY99794.1| alanine racemase [Thermomonospora curvata DSM 43183]
          Length = 375

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            E ++ ++DL A++ N   +   +G A T A+VK   YG G  + A A    G     V 
Sbjct: 2   REPVQARVDLDAIRANVALLRERAGGAETMAMVKAEGYGHGLVEAARAALEGGAGWLGVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122
            V E ++LR       + V+        +      +     S  Q    ++     G   
Sbjct: 62  RVAEALRLRAAGITVPVLVVMATRGEPFEEAVAAGVDLTAGSGWQARRLAEAAERAGRPA 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTH---NSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L+ DTG +R G ++ +          +      ++  ++SHLACAD+P     + QL
Sbjct: 122 RVHLKADTGMSRGGATMADWPATVEAALAAQAAGHLRVVGVMSHLACADEPGHPSIARQL 181

Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQ 233
             F+  + + +          L++S+  L  P   + L RPGI++YG T      +  ++
Sbjct: 182 AVFKEAVEYAEKAGVRPQVRHLSNSAATLTLPEARYDLVRPGIAIYGLTPVPQMGTFGLR 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  A +  +++  AG  VSYG      R++ + + A GY DG P   S L    +  
Sbjct: 242 PAMTLVAELAAVKRVPAGSGVSYGHTYVTERETTLGLVAAGYGDGVPRHGSSLLEVLAGG 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                 G            + MD  + D+ D  +   G+ + +FGP    +    + A A
Sbjct: 302 RRRRIAGR-----------VCMDQFVIDLGDD-TASPGEEVLLFGPGDHGEPTAQEWAQA 349

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
            GT +Y+++ RIGTR  + Y+
Sbjct: 350 LGTISYEIVTRIGTRVPRVYS 370


>gi|119358056|ref|YP_912700.1| alanine racemase [Chlorobium phaeobacteroides DSM 266]
 gi|119355405|gb|ABL66276.1| alanine racemase [Chlorobium phaeobacteroides DSM 266]
          Length = 376

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 97/378 (25%), Positives = 159/378 (42%), Gaps = 26/378 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                I L  LK+N   +    G   R   +VK NAYG   +K+A  L   G+ DF V +
Sbjct: 10  MAEASISLGHLKHNIREIKQCVGTGVRIMGIVKANAYGHNMQKVAETLEAEGISDFGVAN 69

Query: 65  VEEGVKLRLYT-PQAR--IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120
           + E ++L+     +    I         Q +      +   +     +   S +      
Sbjct: 70  IHEAIELKTGGALKKPANILSFSSPIIQQIEYYLHHQIDMTLCDANIMKAASAIAEKHNK 129

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L+VDTG  RLGL   +AL+    +  +   +L  + +H A + +        Q +
Sbjct: 130 KIGVHLKVDTGMGRLGLPPLQALELLRETERQPGLELKGVYTHFAESANDD--FTRRQFK 187

Query: 181 RFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQ 233
            F+T+   Y     K +    ASS  +L  P     + RPGI LYG      +  S  ++
Sbjct: 188 EFKTMTDAYETASGKTLCKHAASSGTLLNNPEMRLDMVRPGILLYGYKPYPALPSSITVR 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  EA++I I+       +SY    K  R   IA  + GYADGY   LS   +     
Sbjct: 248 PVMQFEAKVIFIKTVAKDATISYNRTWKAARPVKIATISAGYADGYHRALSNHAT----- 302

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGT 352
                  FI G     +G +TMD  M D+     +++GD   +FG +   L+++A + G+
Sbjct: 303 ------VFINGKSFQQVGTVTMDQFMVDLGTESDVKIGDRAILFGWEGPCLEELAGSIGS 356

Query: 353 TNYDLLVRIGTRYAKFYT 370
            +Y+LL  + +R  + +T
Sbjct: 357 ISYELLCSVSSRVKRVFT 374


>gi|296315218|ref|ZP_06865159.1| alanine racemase [Neisseria polysaccharea ATCC 43768]
 gi|296837855|gb|EFH21793.1| alanine racemase [Neisseria polysaccharea ATCC 43768]
          Length = 352

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 89/358 (24%), Positives = 160/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L ++I L  L++N+  +  + G  +  AV+K +AYG G  + A AL +     F V +
Sbjct: 2   RPLNVQIRLGNLRHNYQILKEMHGG-KLLAVLKADAYGHGAVRCAFALADL-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++EG++LR       I +L G+    E    +  +L P + +  QL              
Sbjct: 60  IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLS-RHWKKPVK 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    +           +     +  SH +CAD+P S +  +Q+E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+    RI 
Sbjct: 179 LGTKGLEG-EESLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP                     + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PTNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G +  ++G+++MDM   ++ D+    +G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 287 GKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI 343


>gi|34540830|ref|NP_905309.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis W83]
 gi|34397144|gb|AAQ66208.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           gingivalis W83]
          Length = 823

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 164/370 (44%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L+A+ +N +    L     +T  +VK   YG+G  ++   L    V    V   +E
Sbjct: 465 LRINLSAIIHNLNFYRNLVPSGTKTICMVKAQGYGVGSYELVKTLQEHRVDYIAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYA 125
           G +LR       I V+        + + D  L P I S   L  +S+  + +  V +P  
Sbjct: 525 GKELRERGIGMPIVVMNP-QRNAFQTLIDYGLEPEIYSFALLASFSETVVRNGLVGYPVH 583

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG    +               +  + +HLA ADDP        QL  F  
Sbjct: 584 IKIDTGMHRLGFLPSDMTRLGEILAKDAGLSIRSVFTHLAGADDPDLDDFTRSQLLSFDA 643

Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             +    +        + +++G+    +YH  + R GI LYG T        ++ V T  
Sbjct: 644 AFASLSSLLGYIPLRHVLNTAGVERFADYHADMIRLGIGLYGVTAS--GVQGLRPVATLM 701

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+   + + V YG + ++ + S IA+  IGYADG    LS             G+
Sbjct: 702 TTILQIKDISSSDTVGYGRKGRVQQPSRIAIIPIGYADGLDRRLS----------CGVGE 751

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             ++G+  PI+G + MD+ M D+T     E GD + +FG ++ +++VA    T  Y++L 
Sbjct: 752 VLVRGHRCPIVGNVCMDICMIDVTGMP-AEEGDPVVVFGEELPIEEVARKMNTIPYEVLT 810

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 811 GISPRVRRVY 820


>gi|209518012|ref|ZP_03266843.1| alanine racemase [Burkholderia sp. H160]
 gi|209501516|gb|EEA01541.1| alanine racemase [Burkholderia sp. H160]
          Length = 356

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 147/348 (42%), Gaps = 22/348 (6%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83
              +  ++  AVVK NAYG G  +  P L       F +  +EE VKLR       I +L
Sbjct: 22  RRHAPKSKIWAVVKANAYGHGLARAFPGLRA--TDGFGLLDLEEAVKLRELGWAGPILLL 79

Query: 84  YGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142
            G   P    +I   +L   + S  QL    ++          L+++TG NRLG ++++ 
Sbjct: 80  EGFFRPTDIDVIDRYSLTTALHSDEQLRML-EMARLSKPVNIQLKMNTGMNRLGYTVEKF 138

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGI 202
                 +   +      +++H + AD       + Q+E F        G   SL++S+  
Sbjct: 139 RAAWERARACQGVGQITLMTHFSDADGERGI--AHQMEAFERGAQGIAGA-RSLSNSAAT 195

Query: 203 LLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           L  P  HF   RPGI LYG +        +   +Q  +T  + +I ++    G  V YG 
Sbjct: 196 LWHPQAHFDWVRPGIMLYGASPSGVTAAIEGTGLQPAMTLTSELIAVQTLGEGSSVGYGS 255

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
                    I V A GYADGYP                G    + G    I+G+++MDM 
Sbjct: 256 TFTARGSMRIGVVACGYADGYPR-----------VAPEGTPVIVDGVRTRIVGRVSMDML 304

Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
             D+T   +  VG  ++++G  + +DDVA   GT  Y+L+  +  R  
Sbjct: 305 TVDLTPVPTANVGSRVELWGTALPIDDVAQVCGTIGYELMCAVAPRVP 352


>gi|50085519|ref|YP_047029.1| alanine racemase 1, biosynthetic [Acinetobacter sp. ADP1]
 gi|49531495|emb|CAG69207.1| alanine racemase 1, biosynthetic [Acinetobacter sp. ADP1]
          Length = 358

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 97/363 (26%), Positives = 168/363 (46%), Gaps = 22/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ +A+  ++VK NAYG G +    AL       F V  + E ++
Sbjct: 8   IDRQALRYNLNRVKQLAPHAKIVSMVKANAYGHGIKDCLAALET--TDSFGVACLAEALE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPYALQ 127
           +R       I ++ G+    E  I+ + NL  V+    Q+ +  +  +  +       ++
Sbjct: 66  IRDEGYTQSITLIEGVFSQDEMPIVIEKNLECVVHHAQQIKWLLEYKTQYITQKLKVWIK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++      ++    +  +  H A AD P   +N  Q+++  T+ +
Sbjct: 126 LNSGMNRLGFKPDEIIEVIQQLQHQGFHCVLTM--HFANADVPDHPMNQRQIDQLITIKT 183

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEARIIL 244
               IE S  +S+ I   P  HF   RPGI LYG +    ++      + V+   A I+ 
Sbjct: 184 ACAPIEISCCNSAAIFNWPELHFDYVRPGIMLYGASPFAEQNIHQLDLKPVMRFTAHIMA 243

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +    AGE + YG       D  +A+ +IGY DGYP                     +  
Sbjct: 244 LNTIKAGEHIGYGSLYTAKTDMTVAIVSIGYGDGYPRAF-----------IAQNFVALGQ 292

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            + PI+G+++MDM   D+TD   I +   I+++G    +D+VA A+GT  Y+LL R+  R
Sbjct: 293 QLFPIVGRVSMDMLAIDVTD-RDIAIDTEIELWGHTRLVDEVASANGTIGYELLCRLSNR 351

Query: 365 YAK 367
             +
Sbjct: 352 PIR 354


>gi|303231043|ref|ZP_07317785.1| alanine racemase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514307|gb|EFL56307.1| alanine racemase [Veillonella atypica ACS-049-V-Sch6]
          Length = 370

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 165/379 (43%), Gaps = 25/379 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               L ID + ++ N   +  +L   + + AV+K N YG G   +       G +   V 
Sbjct: 2   RPTYLTIDTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
             EE V LR       I++L    P   +++ DTN IP +     L   +K+     +  
Sbjct: 62  IPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALNKVADNHDMII 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             A+ VDTG +R+G+  + A++F     +     +    SH++ AD         Q ++F
Sbjct: 122 RVAVAVDTGMHRIGIKPENAVEFIKRIESYPNLAVDGFFSHMSNADAADQSHAHGQAQKF 181

Query: 183 RTLISHYKGIEA------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQT 234
             ++   +          SLA+S+G+L   +  F   RPGI  YG    ++  +   ++ 
Sbjct: 182 HKMVDEIRAFRPDADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++  + ++ ++   AGE + YG          IA   +GYADGYP +LS          
Sbjct: 242 VLSFHSEVVHVQHLEAGEGIGYGSTYVTPEPMTIATIPVGYADGYPRSLSNR-------- 293

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I+G   P++G+I MD  M  I D+++++ GD + + G      I   ++A  +
Sbjct: 294 ---GTVLIQGTRCPVVGRICMDQFMVAIPDTITVKPGDKVVLLGSQGHESISALEIAALA 350

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y++      R  + Y
Sbjct: 351 STIPYEIFCGFSDRVPRQY 369


>gi|295676844|ref|YP_003605368.1| alanine racemase [Burkholderia sp. CCGE1002]
 gi|295436687|gb|ADG15857.1| alanine racemase [Burkholderia sp. CCGE1002]
          Length = 356

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 148/348 (42%), Gaps = 22/348 (6%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83
              +  ++  AVVK NAYG G  ++ P L       F +  +EE VKLR       I +L
Sbjct: 22  RRHAPKSKIWAVVKANAYGHGLARVFPGLRA--TDGFGLLDLEEAVKLRELGWAGPILLL 79

Query: 84  YGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142
            G   P    +I   +L   + S  QL    ++          L+++TG NRLG ++++ 
Sbjct: 80  EGFFRPTDIDVIDRYSLTTALHSDEQLRML-EMARLSKPVNIQLKMNTGMNRLGYTVEKF 138

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGI 202
                 +   +      +++H + AD       + Q+E F        G   SL++S+  
Sbjct: 139 RAAWERARACQGVGQITLMTHFSDADAERGI--AHQMEAFERGAQGIAGA-RSLSNSAAT 195

Query: 203 LLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           L  P  HF   RPGI LYG +            +Q  +T  + +I ++    G  V YG 
Sbjct: 196 LWHPEAHFDWVRPGIILYGASPSGVTAAIDGTGLQPAMTLASELIAVQTLGEGSSVGYGS 255

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
                    I V A GYADGYP                G    + G    I+G+++MDM 
Sbjct: 256 TFTARAPMRIGVVACGYADGYPR-----------VAPEGTPVIVDGVRTRIVGRVSMDML 304

Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
             D+T   +  VG  ++++G  + +D+VA A GT  Y+L+  +  R  
Sbjct: 305 TVDLTPVPTANVGSRVELWGTALPIDNVAQACGTIGYELMCAVAPRVP 352


>gi|296875898|ref|ZP_06899959.1| alanine racemase [Streptococcus parasanguinis ATCC 15912]
 gi|296433139|gb|EFH18925.1| alanine racemase [Streptococcus parasanguinis ATCC 15912]
          Length = 370

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 153/378 (40%), Gaps = 25/378 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +     ++DL A+  N   ++    +     AVVK NAYG G   +   L    V  F 
Sbjct: 5   KHRPTVARVDLDAIAFNVQQVSEHIPSQALKYAVVKANAYGHGVVAVTQKL-APQVDGFC 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V++++E +++R    Q  I +L  +      +  + ++   ++S+  L       +    
Sbjct: 64  VSNMDEALEIREEGLQHPILILGVVPSETVNLAKEHDIRLTVASLAWLDQLLGEEADLSG 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++VD+G  R+G    E +            ++  I +H A AD+        Q   
Sbjct: 124 LKVHIKVDSGMGRIGFRTIEDIKVAERLLLAAGAEIEGIFTHFATADEADDRKFQAQYHF 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F+ +++  + +      ++S+  L   +  F   R G  +YG       +   + ++  +
Sbjct: 184 FKEVLAALETLPPIVHASNSATSLWHADTIFTAVRLGDVMYGLNPSGSVLALPYEIKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + ++ +++  AG+ + YG          I    IGYADG+   +             
Sbjct: 244 SLVSELVHVKQLEAGQDIGYGATYTTEESQWIGTIPIGYADGWIREMQNF---------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
                IKG   PI+G+++MD     + + L +  G  + + G     +I   +VA   GT
Sbjct: 294 --HVLIKGDYCPIVGRVSMDQVTVRLPEELPL--GTKVTLIGREGEKEITATEVADYRGT 349

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY+++  +  R  + YT
Sbjct: 350 INYEVVCLLSDRIPRDYT 367


>gi|223933704|ref|ZP_03625679.1| alanine racemase [Streptococcus suis 89/1591]
 gi|302024422|ref|ZP_07249633.1| alanine racemase [Streptococcus suis 05HAS68]
 gi|330833424|ref|YP_004402249.1| alanine racemase [Streptococcus suis ST3]
 gi|223897620|gb|EEF64006.1| alanine racemase [Streptococcus suis 89/1591]
 gi|329307647|gb|AEB82063.1| alanine racemase [Streptococcus suis ST3]
          Length = 367

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 151/379 (39%), Gaps = 29/379 (7%)

Query: 3   SNEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   +++++L A+  N+   M  L       AVVK NAYG G   +A  L +     F 
Sbjct: 5   EHRPTQIRVNLDAIAENFEQVMTNLPHKTEAFAVVKANAYGHGAVAVAKKLSSQ-AAGFC 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V++++E ++LR    +  I +L  +      +    N+   ++S+  L     L +    
Sbjct: 64  VSNLDEALELRKAGIEHPILILGVVPVRFLPVAHQLNISVTVASLDWLQDAKDLEADLSG 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ--LSLIISHLACADDPSSHVNSVQL 179
               L++DTG  R+G    +  D        +  +  +  + +H A AD+        QL
Sbjct: 124 LTVHLKLDTGMGRIGFR--KIADLLQAIAILEELEYDIEGVYTHFATADEVDQAHFEYQL 181

Query: 180 ERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQT 234
             F+  +            ++S+  +   +  F L R G  LYG       +     +Q 
Sbjct: 182 SIFKEFLDVLPITPRWIHASNSATSIWHADTVFNLVRLGNILYGLNPSGRVLELPFDVQP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  + I+ +++   G  + YG          IA   IGYADG   +L GL        
Sbjct: 242 ALSLVSEIVHVKQVETGTTIGYGATYHSADSEWIATVPIGYADGLVRSLQGLS------- 294

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  + G    I+G+I+MD     +  +  +  G  + + G D    I + + A   
Sbjct: 295 -----VLVDGQACEIVGRISMDQITIRLPHAYPL--GQKVTLIGQDGDKTISVQEWADCI 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++  +  R  + +
Sbjct: 348 GTINYEVVCLLTDRLPRIF 366


>gi|261380880|ref|ZP_05985453.1| alanine racemase [Neisseria subflava NJ9703]
 gi|284796357|gb|EFC51704.1| alanine racemase [Neisseria subflava NJ9703]
          Length = 352

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 96/358 (26%), Positives = 162/358 (45%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L+ N+  +  L GN +  AV+K +AYG G  + A AL +     F V +
Sbjct: 2   RPLNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHALADI-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           V+EGV+LR    +  I +L G+    E    D  +L P I S  QL  +       ++  
Sbjct: 60  VDEGVELRQNGIKNPIVLLEGVFEAAEYADVDRYDLWPAIGSQWQLEAFVHHEWQHLTT- 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G                +  +  +  SH ACAD+P + +  +QLE F 
Sbjct: 119 VWLKMDSGMHRAGFFPHNYAAAYTALKQSESVENIVKFSHFACADEPENGMTEMQLEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+   +R+ 
Sbjct: 179 LACEGLEG-EESLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVMRLTSRVF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP   S                 + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G    I+G+++MDM   ++  S    +G  ++++G  I +++V+  +G   Y++L  I
Sbjct: 287 GKRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVSEVAGMIPYEILCNI 343


>gi|256852008|ref|ZP_05557395.1| alanine racemase [Lactobacillus jensenii 27-2-CHN]
 gi|260661423|ref|ZP_05862336.1| alanine racemase [Lactobacillus jensenii 115-3-CHN]
 gi|282931888|ref|ZP_06337367.1| alanine racemase [Lactobacillus jensenii 208-1]
 gi|256615420|gb|EEU20610.1| alanine racemase [Lactobacillus jensenii 27-2-CHN]
 gi|260547878|gb|EEX23855.1| alanine racemase [Lactobacillus jensenii 115-3-CHN]
 gi|281303999|gb|EFA96122.1| alanine racemase [Lactobacillus jensenii 208-1]
          Length = 375

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 148/382 (38%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +++DL A+K N  +  A L    +  AVVK NAYG G  K+A      G   F V
Sbjct: 6   HRPAEVEVDLLAIKKNLQAEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVS 121
             ++E  +LR  +    I VL      +  I    N+     S+  L      L    + 
Sbjct: 66  AVLDEAFELRDASIVDPILVLGVTPANEACIAAAHNISLTAPSLEWLKAADMALAKKDMV 125

Query: 122 HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G S  QE +       N     +  + +H A AD   S     Q++
Sbjct: 126 LKIHLAIDSGMGRIGFSEDQEFIAANEFLRNSTHFIVEGMFTHFASADSADSSYFDYQVK 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232
           RF  L +    K     +A+++  +     H  + R GI LYG     N + P       
Sbjct: 186 RFNHLKNLLSIKPKWIHVANTASSIFDKQIHSDIVRFGIGLYGLNPSSNPASPDLESKIT 245

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            +  ++  + +  ++K  +G  + YG       D  I    +GYADG    LSG   +  
Sbjct: 246 LKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGIIRKLSGFKIK-- 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
                     +     PI+G+I MD  M  + + + +  G  + I+         +   A
Sbjct: 304 ----------VGDNFCPIVGRICMDQLMVLLPEKMPV--GTKVVIYSNKTEDPNSIKKAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y+L   +  R  + Y
Sbjct: 352 DYVDTIHYELACLLSDRLPRIY 373


>gi|293609464|ref|ZP_06691766.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827916|gb|EFF86279.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 356

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 97/363 (26%), Positives = 164/363 (45%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK NAYG G +    AL  +    F V  ++EG++
Sbjct: 8   IDRNALQYNLNRVKQLATNSKIVSMVKANAYGHGIKDCLAALNAS--DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127
           +R    Q  + ++ G+    E  I        +I    Q  +  K             ++
Sbjct: 66  IRELGFQQPVTLIEGVFSEDEMPIAIKQKFECIIHHQQQFEWLIKHKQAYINQGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG    E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTL--KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
               + AS  +S+ I   P  HF   RPGI LYG +   ++      ++ V+T  A +I 
Sbjct: 183 ACDPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADQTVHDLDLKPVMTFSAEVIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +      E V YG     T+   IA+ +IGY DGYP                     I  
Sbjct: 243 LNHIQTNEHVGYGSTFCATQAMDIAIVSIGYGDGYPRA-----------YIKPNYVAIDK 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
               ++G+++MDM   D+T  + +++G  ++++GP   +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QPCAVVGRVSMDMIAIDVTG-MKVKLGTPVELWGPHRLVDDVADANGTIGYELLCRLSNR 350

Query: 365 YAK 367
             +
Sbjct: 351 PTR 353


>gi|296115772|ref|ZP_06834398.1| alanine racemase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977749|gb|EFG84501.1| alanine racemase [Gluconacetobacter hansenii ATCC 23769]
          Length = 390

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 189/367 (51%), Gaps = 16/367 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAA-VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL A+  N+  +          A VVK +AYGLG  ++APAL  AG   F+V  +EE
Sbjct: 32  LRIDLDAIAANYRLVRDRVSPTTICAAVVKADAYGLGLTQVAPALQRAGADHFYVAHLEE 91

Query: 68  GVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           G+ LR + TP  RIFVL+G  P  E+     +L PV++S  Q+  +  L        P  
Sbjct: 92  GIALRRHVTPATRIFVLHGPLPDTEEEFTAHDLTPVLNSAGQVAGWRALARRLDRVLPAV 151

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+DTG +R GLS+ +      ++      +  L+ISHLACAD P +  N+ Q  R   +
Sbjct: 152 IQLDTGMSRFGLSMADVRAIADDAGLLAGIRPDLVISHLACADTPQNPANAQQRARLLEM 211

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +       +L++SSGI LGP+YHF + RPG +LYG       ++P++ VV   ARI+ +
Sbjct: 212 AAMLPAAPLALSASSGIFLGPDYHFDMVRPGAALYGIAPNEATANPLRPVVRLSARILQV 271

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R  +AG+ V YG   + +    IA    GYADG                   G  +    
Sbjct: 272 RDIVAGDGVGYGLTYRASGPRRIATIGAGYADGCLRQ-----------GAHHGAAWFGAT 320

Query: 306 MVPILGKITMDMTMFDITDSLSIEVG-DYIQ-IFGPDIKLDDVALASGTTNYDLLVRIGT 363
            +PILG+I+MD    DITD    ++G D    + GP   +D  A A+GT  Y++L  +G 
Sbjct: 321 RLPILGRISMDSITIDITDVPVGQLGPDMAVDLLGPHYDVDAAARAAGTIGYEILTSLGH 380

Query: 364 RYAKFYT 370
           RY + Y 
Sbjct: 381 RYHRAYV 387


>gi|302379690|ref|ZP_07268175.1| alanine racemase [Finegoldia magna ACS-171-V-Col3]
 gi|302312597|gb|EFK94593.1| alanine racemase [Finegoldia magna ACS-171-V-Col3]
          Length = 391

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 102/380 (26%), Positives = 161/380 (42%), Gaps = 30/380 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LK+DL  LK+N+  +  +S   +  AVVK NAYG G   I   L   G+  F V+++ E 
Sbjct: 8   LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L  I     ++    N+   +      +   +   S        ++
Sbjct: 68  LELRKNGIFKPIMILGYISNENIEVAIKNNIELTVYDYDTAVEINNVAKSLNKICKVHIK 127

Query: 128 VDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +DTG  RLG  +     + L+     +      L  I SH + AD         Q   + 
Sbjct: 128 IDTGMTRLGFQVRLDHDKCLEEIFKIYKMDNVVLQGIYSHFSDADSEDYSYTKEQYNTYI 187

Query: 184 TLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQT 234
             +     +GI      +A+ +G ++   Y   + R GI LYG         N    ++ 
Sbjct: 188 GFMIDVENRGITVPIKHIANDAGAIIH-GYFLDMIRCGIGLYGYHASDYVTENSRLNLEE 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           + +    + +I+    G  + YG       ++++A A IGYADGYPL LS          
Sbjct: 247 ISSLYTTVSMIKTVPKGTDIGYGRTFTTNSETIVATATIGYADGYPLELSN--------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  I G    ILGK+ MD  M D+T    ++VGD + +FG D    I L D+A  +
Sbjct: 298 --KAYVIINGKKAKILGKVCMDQIMIDVTYIRDVKVGDKVLLFGKDDMGEISLYDLAEMA 355

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
            T  Y+LL R+  R  + YT
Sbjct: 356 NTNVYELLCRVTMRIPRIYT 375


>gi|303234171|ref|ZP_07320817.1| alanine racemase [Finegoldia magna BVS033A4]
 gi|302494712|gb|EFL54472.1| alanine racemase [Finegoldia magna BVS033A4]
          Length = 391

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 101/380 (26%), Positives = 161/380 (42%), Gaps = 30/380 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LK+DL  LK+N+  +  +S   +  AVVK NAYG G   I   L   G+  F V+++ E 
Sbjct: 8   LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L  I     ++    N+   +      +   +   S        ++
Sbjct: 68  LELRKNGIFKPIMILGYISNENIEVAIKNNIELTVYDYDTAVEINNVAKSLNKICKVHIK 127

Query: 128 VDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +DTG  RLG  +     + L+     +      L  I SH + AD         Q   + 
Sbjct: 128 IDTGMTRLGFQVRLDHDKCLEEIFKIYKMDNVVLQGIYSHFSDADSEDYSYTKEQYNTYI 187

Query: 184 TLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQT 234
             +     +GI      +A+ +G ++   Y   + R GI LYG         N    ++ 
Sbjct: 188 GFMIDVENRGITVPIKHIANDAGAIIH-GYFLDMIRCGIGLYGYHASDYVRENSRLNLEE 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           + +    + +I+    G  + YG       ++++A A IGYADGYPL LS          
Sbjct: 247 ISSLYTTVSMIKTVPKGTDIGYGRTFTTNSETVVATATIGYADGYPLELSN--------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  I G    ILGK+ MD  M D+T    ++VGD + +FG D    I L ++A  +
Sbjct: 298 --KAYVIINGKKAKILGKVCMDQIMIDVTYIRDVKVGDKVLLFGKDDMGEISLYELAEMA 355

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
            T  Y+LL R+  R  + YT
Sbjct: 356 NTNVYELLCRVTMRIPRIYT 375


>gi|188995058|ref|YP_001929310.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594738|dbj|BAG33713.1| alanine racemase [Porphyromonas gingivalis ATCC 33277]
          Length = 823

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 164/370 (44%), Gaps = 23/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L+A+ +N +    L     +T  +VK   YG+G  ++   L    V    V   +E
Sbjct: 465 LRINLSAIIHNLNFYRNLVPSGTKTICMVKAQGYGVGSYELVKTLQEHRVDYIAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYA 125
           G +LR       I V+        + + D  L P I S   L  +S+  + +  V +P  
Sbjct: 525 GKELRERGISMPIVVMNP-QRNAFQTLIDYGLEPEIYSFALLASFSETVVRNGLVGYPVH 583

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           +++DTG +RLG    +               +  + +HLA ADDP        QL  F  
Sbjct: 584 IKIDTGMHRLGFLPSDMTRLGEILAKDAGLSIRSVFTHLAGADDPDLDDFTRSQLLSFDA 643

Query: 185 LISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             +    +        + +++G+    +YH  + R GI LYG T        ++ V T  
Sbjct: 644 AFASLSSLLGYIPLRHVLNTAGVERFADYHADMIRLGIGLYGVTAS--GVQGLRPVATLM 701

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I+ I+   + + V YG + ++ + S IA+  IGYADG    LS             G+
Sbjct: 702 TTILQIKDISSSDTVGYGRKGRVQQPSRIAIIPIGYADGLDRRLS----------CGVGE 751

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             ++G+  PI+G + MD+ M D+T     E GD + +FG ++ +++VA    T  Y++L 
Sbjct: 752 VLVRGHRCPIVGNVCMDICMIDVTGMP-AEEGDPVVVFGEELPIEEVAHKMNTIPYEVLT 810

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 811 GISPRVRRVY 820


>gi|255536698|ref|YP_003097069.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342894|gb|ACU09007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 813

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 170/371 (45%), Gaps = 23/371 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   +L     +  A+VK  +YGLG  +IA  L +  +    V   +E
Sbjct: 453 LEVNLNAVLHNINVHKSLLKPKTKMMAMVKAYSYGLGGYEIAEFLQHHHIDYLGVAYADE 512

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK---LMSCGVSHPY 124
           G  LR       I V+       + II + +L P I S   L  +++          +P 
Sbjct: 513 GADLRKNGISVPIMVMNPEQHSYDSII-EHHLEPEIYSFRVLDLFNQQLIRKGADKDYPI 571

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183
            ++++TG NRLG    E  +         + +++ + SHL+ AD +   +    Q+E+F+
Sbjct: 572 HIKLETGMNRLGFREDEIDELAARLAKMDV-KVASVFSHLSTADSEEEHNYTMHQIEKFQ 630

Query: 184 TLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           ++ +             + +SSGI    +Y F++ R GI + G T      + ++ VV+ 
Sbjct: 631 SISTRLAEKLKYEPIRHILNSSGIANYADYQFEMVRIGIGMVGITSNEQIKNQLRNVVSF 690

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ I  I +  AG+ V Y  + K T+ + IA   +GYADG P  +              G
Sbjct: 691 KSVISQISEINAGDSVGYDRKYKATKRTRIATIPVGYADGVPRMIGNGI----------G 740

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I G + PI+G I MDM M ++ DS S + GD + IF     L + +    T  Y++L
Sbjct: 741 HVSISGNLYPIVGNICMDMMMVEVGDS-SAKEGDEVIIFNSKPSLAEFSDYCKTIPYEVL 799

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 800 TSISRRVKRVY 810


>gi|187250740|ref|YP_001875222.1| alanine racemase [Elusimicrobium minutum Pei191]
 gi|186970900|gb|ACC97885.1| Alanine racemase [Elusimicrobium minutum Pei191]
          Length = 369

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 146/374 (39%), Gaps = 28/374 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVE 66
             IDL  LK+N + + +L +   +   V+K NAYG G  K+A               SVE
Sbjct: 10  AVIDLENLKHNINYVRSLLNPKTKMLFVLKANAYGHGAVKLAKYAQENNLCDMLGTASVE 69

Query: 67  EGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPY 124
           EGV+LR    +  + VL  ++P    +     +L   I+S+               +   
Sbjct: 70  EGVELRENGIKLPVLVLGSVYPFEAFETAAAYDLAITIASLSAAKAVCEIASKINKTVYC 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++ DTG  R+G                K   +  + +HL+   D      S QL  F  
Sbjct: 130 HVKQDTGMGRIGTRRTGVAKILQELKQNKNIIIEGLYTHLSS-TDSDEVFTSCQLGYFEE 188

Query: 185 LISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
                K            ++ G L  P   F + R G+  YG    + +    + V++ +
Sbjct: 189 AALAAKADNIDVEIFHACATMGTLFAPRGRFDMVRLGLGAYGM---VKEDKNFKPVLSLK 245

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++I+ ++       +SY       +   IA   +GY DGY   +SG             +
Sbjct: 246 SKIVFVKDVKKDFAISYNQSFIAPKQMHIATVPVGYGDGYMRAMSG-----------KAE 294

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             I G    ++G ITMDM M D+TD     VGD + + G     +I   ++A  + T  Y
Sbjct: 295 VLIAGKRCKVIGNITMDMIMVDVTDVQEATVGDEVVLIGKQGDEEITAWELASWANTIAY 354

Query: 356 DLLVRIGTRYAKFY 369
           ++   I  R  +FY
Sbjct: 355 EITTLITARVPRFY 368


>gi|313833423|gb|EFS71137.1| alanine racemase [Propionibacterium acnes HL056PA1]
          Length = 375

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 149/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAESTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|55670437|pdb|1VFH|A Chain A, Crystal Structure Of Alanine Racemase From D-Cycloserine
           Producing Streptomyces Lavendulae
 gi|55670438|pdb|1VFS|A Chain A, Crystal Structure Of D-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
 gi|55670439|pdb|1VFS|B Chain B, Crystal Structure Of D-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
 gi|55670440|pdb|1VFT|A Chain A, Crystal Structure Of L-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
 gi|55670441|pdb|1VFT|B Chain B, Crystal Structure Of L-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
          Length = 386

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 166/378 (43%), Gaps = 29/378 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +IDL A++ N  ++ A +  +   AVVK NAYG G    A A   AG       + EE 
Sbjct: 10  AEIDLDAVRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEA 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127
           ++LR    Q RI        G  +   +T++   +S +       +   + G +    L 
Sbjct: 70  LELRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLX 129

Query: 128 VDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            DTG  R G    +  +       +  +   Q++ + SH ACAD+P      +QL+ FR 
Sbjct: 130 ADTGLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRD 189

Query: 185 LISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TV 235
           ++++   +G++     +A+S   L  P  HF L R G+++YG +       P Q      
Sbjct: 190 MLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSPELGTPAQLGLRPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A + L++   AG  VSYG       ++ +A+   GYADG P   SG          
Sbjct: 250 MTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGR--------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             G   + G +    G+I MD  + D+ + L  E GD   I G     +   +D A A+ 
Sbjct: 301 --GPVLVAGKIRRAAGRIAMDQFVVDLGEDL-AEAGDEAVILGDAERGEPTAEDWAQAAH 357

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+++ RIG R  + Y
Sbjct: 358 TIAYEIVTRIGGRVPRVY 375


>gi|227878363|ref|ZP_03996318.1| alanine racemase [Lactobacillus crispatus JV-V01]
 gi|227862042|gb|EEJ69606.1| alanine racemase [Lactobacillus crispatus JV-V01]
          Length = 376

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 147/384 (38%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A++ N  + M  L+   +  AVVK NAYG G  ++A      G     V
Sbjct: 6   HRPAVVKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGAAGLCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I    N+   I ++  L    K L    + 
Sbjct: 66  AILDEALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLEKEQLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + VD+G  R+G +  E  DF        N     +  + +H A AD         Q
Sbjct: 126 LKVHIGVDSGMGRIGFNEDE--DFIAANKFLQNNDNFYVEGMFAHFASADSADDTYFKHQ 183

Query: 179 LERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---- 232
           +E+F  + S    K     + +++  +   +      R GI +YG     N   P     
Sbjct: 184 VEKFAHMRSLLTVKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDLKSS 243

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G    
Sbjct: 244 ISLEPALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF--- 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD---- 345
                    K  +     PI+G+I MD  M  +   + +     + I   D    +    
Sbjct: 301 ---------KVKVGDEYCPIVGRICMDQFMVKMPKKMPLR--TKVVIISNDPTAPNNIKA 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
            A    T +Y++   +  R  + Y
Sbjct: 350 AADYVDTIHYEVACLLNDRLPRVY 373


>gi|238797371|ref|ZP_04640871.1| Alanine racemase, catabolic [Yersinia mollaretii ATCC 43969]
 gi|238718802|gb|EEQ10618.1| Alanine racemase, catabolic [Yersinia mollaretii ATCC 43969]
          Length = 357

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 156/367 (42%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   + L+AL++N   +    G+A   +VVK NAYG G  +I   L       F +  
Sbjct: 3   RPIAATLHLSALRHNLSLIRRHVGSANIWSVVKANAYGHGLARIWQGLDA--TDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    Q  I +L G    Q+  + D   L   + S  QL   +          
Sbjct: 61  LNEAILLREQGWQGPILLLEGFFQPQDLALLDHYRLTTTVHSDWQLEAINAAR-LSAPLN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG  + +A      + +        ++SH A A   +      Q  R +
Sbjct: 120 IYLKLNSGMNRLGFPVGQADAVWQWANSLSNVGEVTLMSHFANA--DNHIGAGEQFSRIQ 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
               H        A+S+ IL  P  H+   RPGI LYG +   +        ++ V+  +
Sbjct: 178 QASGHIPAARC-FANSAAILRNPETHYDWVRPGIILYGASPSGDIADIAGIGLRPVMQLQ 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II I+   AG  V YG +   +    I V A GYADGYP                G  
Sbjct: 237 SEIIAIQALSAGHQVGYGSRYSASGSQRIGVVACGYADGYPRLA-----------PSGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G I+MDM   D+T     +VG  ++I+G  + +D+VA A+GT  Y+L+ 
Sbjct: 286 IRVDGVLTQTVGAISMDMLTVDLTPCPQAQVGSQVEIWGETLPIDNVAAAAGTVGYELMC 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 ALAARVP 352


>gi|330821390|ref|YP_004350252.1| Alanine racemase [Burkholderia gladioli BSR3]
 gi|327373385|gb|AEA64740.1| Alanine racemase [Burkholderia gladioli BSR3]
          Length = 375

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 155/367 (42%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +I   A+++N   +   + ++R  AVVK NAYG G E+I P L         +  
Sbjct: 3   RPILAQIRPAAVRHNLAVIRRRAASSRVWAVVKANAYGHGIERIYPGLAE--ADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L G+    +  I D   L   + +  QL   +          
Sbjct: 61  LDEAVRVRELGWTRPVLLLEGLFEAADVAIADRYRLSVAVHTPEQLDMLAAARPT-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG       +    +          ++ H A A          Q++ F 
Sbjct: 120 IQLKMNSGMNRLGFRPDVYREAWQRASTTPAVGRIALMMHFANA---DEGQADWQMQVFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAE 239
                  G E +L++S+G+L  P  H    RPG  LYG +     +      +   +T  
Sbjct: 177 AATQGLPG-ERTLSNSAGVLWHPAAHRDWVRPGTILYGASPTGVARDIADTGLLPAMTLS 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+I I+   A E V YG +   +    + V A GYADGYP                G  
Sbjct: 236 SRLIGIQTIEANETVGYGRRFAASSAMRVGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G    ++G+++MDM   D+T   +  +G  ++++G  + +D+VA A+ T  Y+L+ 
Sbjct: 285 IVVDGVRTRVVGRVSMDMLTVDLTPCPNARIGSPVELWGSQVHVDEVAEAASTIGYELIC 344

Query: 360 RIGTRYA 366
            I  R  
Sbjct: 345 AIARRVP 351


>gi|322832740|ref|YP_004212767.1| alanine racemase [Rahnella sp. Y9602]
 gi|321167941|gb|ADW73640.1| alanine racemase [Rahnella sp. Y9602]
          Length = 357

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 160/367 (43%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   +  +AL  N + +   + N++   VVK N YG G  +I  +L       F +  
Sbjct: 3   RPISATLSQSALTQNLNIIRGFAPNSKVWTVVKANGYGHGISRIWRSLSA--TDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
             E + LR    Q  I +L G    ++  I D   L   + S  Q+   ++  S  +   
Sbjct: 61  FNEAILLRESGWQGPILLLEGFFTAEDLAIVDKYRLTTAVHSEWQIKALAQA-SISLPVS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG + + A          K      ++SH A AD         Q+    
Sbjct: 120 IYLKVNSGMNRLGFAPERAGAVWQQLRELKQVGEITLMSHFATADSVEG--VDAQMSVIN 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239
               + +G    LA+S+  L  P+ H    RPGI +YG +            +Q V+T +
Sbjct: 178 LAGQNIRG-PRCLANSAATLWHPHTHHDWIRPGIIIYGASPSGEWKDIAHTGLQPVMTLK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I +++  AG  V YGG+  +TR   I V A GYADGYP                G  
Sbjct: 237 SELIAVQELNAGARVGYGGRYSVTRPQRIGVVACGYADGYPRHA-----------PSGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G      G ++MDM   D+T     ++G  ++++G ++ +DDVA A+GT  Y+LL 
Sbjct: 286 VWVDGVRTTTTGTVSMDMLAVDLTPCPQAQMGAPVELWGNNLPVDDVATAAGTLGYELLS 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 ALAPRVP 352


>gi|238785910|ref|ZP_04629876.1| Alanine racemase, catabolic [Yersinia bercovieri ATCC 43970]
 gi|238713179|gb|EEQ05225.1| Alanine racemase, catabolic [Yersinia bercovieri ATCC 43970]
          Length = 373

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 100/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   + L+AL +N   +    G+A+  +VVK NAYG G  +I   L  A    F +  
Sbjct: 19  RPIAATLHLSALHHNLSLIRRHVGSAKIWSVVKANAYGHGLARIWQGL--AATDGFALLD 76

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    Q  I +L G    Q+  + D   L  ++ S  QL   +          
Sbjct: 77  LNEAILLREQGWQGPILLLEGFFQPQDLALLDHYRLTTIVHSDWQLEAINAAR-LSAPLN 135

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG  + +A      + +        ++SH A A   +      Q  R +
Sbjct: 136 IYLKLNSGMNRLGFPVGQADAVWQWANSLSNVAEVTLMSHFANA--DNHIGTHEQFSRIQ 193

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
               H        A+S+ IL  P  H+   RPGI LYG +   N        ++ V+   
Sbjct: 194 QASGHISA-TRCFANSAAILHAPETHYDWVRPGIILYGASPSGNIADIAEIGLRPVMHLH 252

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   AG  V YG + + T    I V A GYADGYP                G  
Sbjct: 253 SEIIAVQALSAGHQVGYGSRYRATGAQRIGVVACGYADGYPRLA-----------PSGTP 301

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +   +G I+MDM   D+T     +VG  ++I+G ++ +D+VA A+GT  Y+L+ 
Sbjct: 302 IRVDGILTQTVGAISMDMLTVDLTPCPQAQVGSQVEIWGANLPIDNVAAAAGTVGYELMC 361

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 362 ALAARVP 368


>gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
 gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
          Length = 846

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 151/373 (40%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK +AYG G  +IA +L    V    V   +
Sbjct: 487 LEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     A I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 547 EGSELRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 603

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG ++++         N+       + SH   +D          Q+E 
Sbjct: 604 PIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSSQFDAFTRGQIEL 663

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   + + R GI LYG +   N    +  V 
Sbjct: 664 FEKGSQELQAAFSHKILRHICNTAGIERFPEAQYDMVRLGIGLYGVSPIDN--SIIHNVS 721

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 722 TLKTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRHLG----------RG 771

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++    T  Y+
Sbjct: 772 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLKTIPYE 830

Query: 357 LLVRIGTRYAKFY 369
           +L  I TR  + Y
Sbjct: 831 VLTSISTRVKRVY 843


>gi|262195116|ref|YP_003266325.1| alanine racemase [Haliangium ochraceum DSM 14365]
 gi|262078463|gb|ACY14432.1| alanine racemase [Haliangium ochraceum DSM 14365]
          Length = 397

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 111/384 (28%), Positives = 178/384 (46%), Gaps = 28/384 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ-DF 60
           H+    R++IDL A+  N   +  +S  A   AVVK +AYG G   +A +L   G    F
Sbjct: 3   HTVRPTRVEIDLDAIHANARVLREVS-QAALYAVVKADAYGHGARVVARSLAEVGAAEGF 61

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V+ VEEG +LR     A I V+     G E  I   +L+  +SS   +   +   +   
Sbjct: 62  AVSLVEEGCELRDAGIDAPILVMGPALRGGEDEIVGRDLMAALSSFDDIARLAAAAARRG 121

Query: 121 SH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH----VN 175
           +  P  L+VDTG  RLG++     +   +       ++  ++SHLACAD         ++
Sbjct: 122 ARLPVHLKVDTGMGRLGIAPARVGEALDHIRAHGSLEVVGLMSHLACADGDDPADPGCMS 181

Query: 176 SVQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q+ RF    +       + +   LA+SS  LL P     L R G++LYG + +  +  
Sbjct: 182 YEQIARFDEAAAVLRARGLRHVRQHLANSSATLLFPEARRDLVRCGLALYGNSQQPERVP 241

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  V     I  +R+  AG  VSYG   +   D+ +AV  IGYADG P  L+G+    
Sbjct: 242 RLRQGVRLVTEIAQVREVAAGSSVSYGALWRAPHDARVAVIPIGYADGAPRRLTGV---- 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD----IKLDD 345
                  G+  I G   P++G ++MDMTM D++    S+  GD + + G      I + +
Sbjct: 298 -------GEVLIAGRRCPMVGAVSMDMTMIDVSALGGSVGEGDEVVLLGEQGDDAISVHE 350

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
           +A  +G   Y++   +  R  + Y
Sbjct: 351 MASWTGLCEYEVTCGLSKRVPRVY 374


>gi|217032731|ref|ZP_03438215.1| hypothetical protein HPB128_158g10 [Helicobacter pylori B128]
 gi|298736103|ref|YP_003728628.1| alanine racemase [Helicobacter pylori B8]
 gi|216945547|gb|EEC24202.1| hypothetical protein HPB128_158g10 [Helicobacter pylori B128]
 gi|298355292|emb|CBI66164.1| alanine racemase [Helicobacter pylori B8]
          Length = 377

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 94/381 (24%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR + P+  I +L         ++ D +L  ++ S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFPKTPILILGYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKAKKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTD--KINKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG     ++ +S P   
Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLARALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + D    + GD + +FG          ++A 
Sbjct: 303 ------QVVINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSAKANDASEIAT 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIAYETISTLSKRLERVY 376


>gi|319399562|gb|EFV87817.1| alanine racemase [Staphylococcus epidermidis FRI909]
          Length = 382

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 91/382 (23%), Positives = 161/382 (42%), Gaps = 30/382 (7%)

Query: 3   SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R     ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 2   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSC 118
           F V +++E ++LR++   A++ VL  +     +      +   + S         ++   
Sbjct: 62  FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 121

Query: 119 GVSHPY-ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              + +  +++DTG  R+G+  + E  +       +       + +H A AD+P S +N 
Sbjct: 122 NQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKRNHLVFEGVYTHFASADEPGSSMNE 181

Query: 177 VQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
            Q   F+ +++   K I     +S+G LL         R GISLYG         N    
Sbjct: 182 -QYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      +  + ++   AGE VSYG       +  IA+  IGYADGY  ++ G      
Sbjct: 241 LRPSAQLVSETVQVKTLKAGETVSYGRTYTAAEEMTIAILPIGYADGYLRSMQG------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                     + G    ++G+I MD  +  +     ++ G+ + +    +      + VA
Sbjct: 295 ------AFVNVNGNQCEVIGRICMDQMIVKVPSH--VKTGEKVILMDNHVDSPQSAEAVA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++L  +  R  + Y
Sbjct: 347 NKQGTINYEVLCNLSRRLPRIY 368


>gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
 gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
          Length = 821

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 151/373 (40%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK +AYG G  +IA +L    V    V   +
Sbjct: 462 LEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 521

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     A I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 522 EGSELRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 578

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG ++++         N+       + SH   +D          Q+E 
Sbjct: 579 PIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSSQFDAFTRGQIEL 638

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   + + R GI LYG +   N    +  V 
Sbjct: 639 FEKGSQELQAAFSHKILRHICNTAGIERFPEAQYDMVRLGIGLYGVSPIDN--SIIHNVS 696

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 697 TLKTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRHLG----------RG 746

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++    T  Y+
Sbjct: 747 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLETIPYE 805

Query: 357 LLVRIGTRYAKFY 369
           +L  I TR  + Y
Sbjct: 806 VLTSISTRVKRVY 818


>gi|171319654|ref|ZP_02908747.1| alanine racemase [Burkholderia ambifaria MEX-5]
 gi|171095107|gb|EDT40115.1| alanine racemase [Burkholderia ambifaria MEX-5]
          Length = 373

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 151/367 (41%), Gaps = 23/367 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   +   A+++N   +   +  +R  AV+K NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHVRPDAVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P    +     L   +     L              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGIFEPADVDLADRHRLTVTVHCDEHLDLLIAAKPR-QPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A          QLE+F 
Sbjct: 120 IQLKMNSGMNRLGYRPHAFRAAWERAAAAPSIGKITLMMHFANA---DEGEVDWQLEQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
              +   G E S ++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 AATAGIPG-ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++     E V YG +    R   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAPEETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+LL 
Sbjct: 285 IAVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELLC 344

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 345 ALARRVP 351


>gi|73662116|ref|YP_300897.1| alanine racemase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|123643046|sp|Q49Z24|ALR_STAS1 RecName: Full=Alanine racemase
 gi|72494631|dbj|BAE17952.1| alanine racemase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 382

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 159/382 (41%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+  N+     L  N     VVK N YGLG  K+A  L + G + 
Sbjct: 2   SDKYYRSTYVNVDLNAIVANFQVFQKLHPNKTVMPVVKANGYGLGSIKVARQLMDNGAEF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSC 118
           F V +++E ++LR++   A+I VL  I            +   + S    +    ++   
Sbjct: 62  FAVATLDEAIELRMHGIDAKILVLGVIPTEHINKAIQHRVAITVPSKSWLVEAVKEIPES 121

Query: 119 G-VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                   +++DTG  RLG+ + +E  +               + +H ACAD+P   +N 
Sbjct: 122 NEKDLWIHVKLDTGMGRLGMKTAEEYKEVIELINGHSHLIFEGVFTHFACADEPGDSMNR 181

Query: 177 VQLERFRTLISHYKGIEASLA-SSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
            Q   F  ++      +   + +S+G L+         R GISLYG         N    
Sbjct: 182 QQT-MFEEIVGQADKPDYIHSQNSAGALMKDTQFCNAVRVGISLYGYYPSAYVKSNVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      + I+  +   AGE VSYG        + I V  +GYADGYP  + G      
Sbjct: 241 LKPSAQWISEIVQTKLLHAGESVSYGSVYTADEKTKIGVIPVGYADGYPRMMKGFS---- 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     + G    ++GK+ MD T+  I D   I+VGD + I           + +A
Sbjct: 297 --------VNVNGKQCEVIGKVCMDQTIIKIPD--EIQVGDKVIIMDHHSDTPQSAEALA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L R+  R  + Y
Sbjct: 347 HQQQTINYEVLCRLSRRLPRVY 368


>gi|226952236|ref|ZP_03822700.1| alanine racemase [Acinetobacter sp. ATCC 27244]
 gi|226837074|gb|EEH69457.1| alanine racemase [Acinetobacter sp. ATCC 27244]
          Length = 375

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 148/375 (39%), Gaps = 28/375 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+ N   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHTQALRQNLELLRTTVPNSKVFAVVKANAYGHGIERVYDAFKT--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  +LR       I +L GI  P          L   + S  QL +  + +       
Sbjct: 61  IEEAKRLRALGWTGPILLLEGIFSPQDLFDCAQYQLSFTVHSEHQLEWLQQHIYPA-QFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP--SSHVNSVQLER 181
             L++++G NRLG   Q+      +            + H + AD           QL  
Sbjct: 120 IFLKMNSGMNRLGFKPQQYRQVWRHLQRLNNVAKITHMMHFSDADGQRFGQAGVDYQLAE 179

Query: 182 FRTLISHYKGIEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F T I    G E S+++S+ IL  P   H    R GI LYG +        +   +   +
Sbjct: 180 FETHIQDLPG-ERSVSNSAAILRYPTQLHSDYVRGGIMLYGSSPDYPQHSIQDWGLAPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + +I I++    E V YG          + + A GYADGY                 
Sbjct: 239 SLRSELIAIQQLKTNESVGYGSSFVAEHAMSVGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    + G     +G+++MDM   D+T   + E+G  + ++G       + +DDVA ASG
Sbjct: 288 GTPILVNGIRTRTIGRVSMDMLAVDLTPVPNAEIGSEVVLWGTSKTGSILPIDDVAAASG 347

Query: 352 TTNYDLLVRIGTRYA 366
           T  Y+L+  +  R  
Sbjct: 348 TVGYELMCGVTARVK 362


>gi|77463017|ref|YP_352521.1| alanine racemase [Rhodobacter sphaeroides 2.4.1]
 gi|123592286|sp|Q3J3L4|ALR_RHOS4 RecName: Full=Alanine racemase
 gi|77387435|gb|ABA78620.1| alanine racemase [Rhodobacter sphaeroides 2.4.1]
          Length = 349

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 188/363 (51%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  NW +++ + + + +T AVVK ++YGLG  K+A AL  AG + FFV + EE
Sbjct: 6   LTIDLDAIAANWRALDQMTASDCQTGAVVKADSYGLGAAKVAHALARAGARRFFVATCEE 65

Query: 68  GVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G  +R        I V  G   G   +I D +L P+++S+ Q    ++        P+ L
Sbjct: 66  GADVRRALGSGPQICVFSGHMEGDTALIRDFDLTPMLNSIDQ---LTRHFEALGGQPFGL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G NRLGL   E       +         L++SHLAC+DDP   +N+ QL  FR + 
Sbjct: 123 QLDSGMNRLGLEPGEWEAVAGFALEAG---PELLMSHLACSDDPDHPMNAEQLGAFRAMT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
               G+  SL+++ GILLGP +HF+LTRPGI LYGG    N     + VV     +I +R
Sbjct: 180 DG-TGVPRSLSATGGILLGPAWHFELTRPGIGLYGGRPFENA----RPVVRLSLPVIQVR 234

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   GE V Y         S IA  A GYADG P TLS   + ++  V            
Sbjct: 235 EVEIGEPVGYSNTWTAEHTSTIATVAAGYADGLPRTLSSRATLYAGRVP----------- 283

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P++G+++MD+   D++    +     + I GP    DD+A  +GT  Y++L  +G RY 
Sbjct: 284 CPLVGRVSMDLITVDVSHLPEVPE--TLDILGPHQTPDDLADTAGTIGYEILTSLGRRYQ 341

Query: 367 KFY 369
           + Y
Sbjct: 342 RRY 344


>gi|297587277|ref|ZP_06945922.1| alanine racemase [Finegoldia magna ATCC 53516]
 gi|297575258|gb|EFH93977.1| alanine racemase [Finegoldia magna ATCC 53516]
          Length = 391

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 103/380 (27%), Positives = 161/380 (42%), Gaps = 30/380 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LK+DL  LK+N+  +  +S   +  AVVK NAYG G   I   L   G+  F V+++ E 
Sbjct: 8   LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L  I     ++    N+   +      +   +   S        ++
Sbjct: 68  LELRKNGIFKPIMILGYISNENIEVAIKNNIELTVYDYETAVEINNVAKSLNKICKVHIK 127

Query: 128 VDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +DTG  RLG  +     + L+     +      L  I SH + AD         Q   + 
Sbjct: 128 IDTGMTRLGFQVRLDKDKCLEEIFKIYKMDNVVLQGIYSHFSDADSEDYSYTKEQYNTYI 187

Query: 184 TLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQT 234
             +     +GI      +A+ +G ++   Y   + R GI LYG         N    ++ 
Sbjct: 188 GFMIDVENRGITVPIKHIANDAGAIIH-GYFLDMIRCGIGLYGYHASDYVRENSRLNLEE 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           + +    + +I+    G  + YG       ++++A A IGYADGYPL LS          
Sbjct: 247 ISSLYTTVSMIKTVPKGTDIGYGRTFTTNSETVVATATIGYADGYPLELSN--------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  I G    ILGK+ MD  M D+T    ++VGD I +FG D    I L D+A  +
Sbjct: 298 --KAYVIINGKKAKILGKVCMDQIMIDVTYIRDVKVGDKILLFGKDDMGEISLYDLAEMA 355

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
            T  Y+LL R+  R  + YT
Sbjct: 356 NTNVYELLCRVTMRIPRIYT 375


>gi|238854498|ref|ZP_04644836.1| alanine racemase [Lactobacillus jensenii 269-3]
 gi|260664819|ref|ZP_05865670.1| alanine racemase [Lactobacillus jensenii SJ-7A-US]
 gi|313472625|ref|ZP_07813114.1| alanine racemase [Lactobacillus jensenii 1153]
 gi|238832851|gb|EEQ25150.1| alanine racemase [Lactobacillus jensenii 269-3]
 gi|239529422|gb|EEQ68423.1| alanine racemase [Lactobacillus jensenii 1153]
 gi|260561302|gb|EEX27275.1| alanine racemase [Lactobacillus jensenii SJ-7A-US]
          Length = 375

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 92/382 (24%), Positives = 153/382 (40%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +++DL A+K N     A L    +  AVVK NAYG G  K+A      G + F V
Sbjct: 6   HRPAEVEVDLLAIKKNLQEEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGAEGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVS 121
             ++E  +LR  +    I VL      +  I    N+     S+  L      L    + 
Sbjct: 66  AVLDEAFELRDSSIVDPILVLGVTPANEACIAAAHNISLTAPSLEWLEAADKALAKKDMV 125

Query: 122 HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G S  QE +       N     +  + +H A AD   SH    Q++
Sbjct: 126 LKIHLAIDSGMGRIGFSEDQEFIAANEFLRNSTHFIVEGMFTHFASADSRDSHYFDYQVK 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232
           RF  L +    K     +A+++  +   N H  + R GI LYG     N + P       
Sbjct: 186 RFNHLKNILSIKPKWIHVANTASSIFDKNIHSDIVRFGIGLYGLNPSSNPASPDLESEIN 245

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            +  ++  + +  ++K  +G  + YG       D  I    +GYADG    LSG   +  
Sbjct: 246 LKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGVIRKLSGFKIK-- 303

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVA 347
                     +  +  PI+G+I MD  M  + + + +  G  + I+  + +    +   A
Sbjct: 304 ----------VGAHYCPIVGRICMDQLMVLLPEKMPV--GTKVVIYSNNPEDPNFIKKAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y+L   +  R  + Y
Sbjct: 352 DYVDTIHYELACLLSDRLPRIY 373


>gi|313803210|gb|EFS44406.1| alanine racemase [Propionibacterium acnes HL110PA2]
 gi|314963982|gb|EFT08082.1| alanine racemase [Propionibacterium acnes HL082PA1]
 gi|315081459|gb|EFT53435.1| alanine racemase [Propionibacterium acnes HL078PA1]
          Length = 375

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 145/375 (38%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLRAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185
            VD+G  R+GL  +     T  +   +  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPEHLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEEFTRHEIDAFMTA 189

Query: 186 I-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +              LA+S  IL        + R GI  YG     + +   +   ++  
Sbjct: 190 VTQTQTDRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTINPGDAIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G + PI+G+I MD  M D+    S+ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIGGSVHPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  + + 
Sbjct: 359 EITCAISKRVDRRWV 373


>gi|190572625|ref|YP_001970470.1| alanine racemase [Stenotrophomonas maltophilia K279a]
 gi|190010547|emb|CAQ44156.1| putative alanine racemase [Stenotrophomonas maltophilia K279a]
          Length = 355

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 163/370 (44%), Gaps = 20/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L G  +  A++K +AYG G  + A AL       F V +
Sbjct: 2   RPARALIDLGALRSNYRLARELGGG-KALAIIKADAYGHGAVRCAQAL-EGEADGFGVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A I +L GI       ++ + +    + S  QL   +          
Sbjct: 60  IEEALELRQAGIRAPILLLEGIFELSDMALVAEHDFWFAVGSPWQLEAVAAF-DSPRPLT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLGL +                +  ++++HLA AD+  S     Q   F 
Sbjct: 119 VWLKLDSGMHRLGLDVDSFRAAHARLSALPEVERIVLMTHLARADELDSERTHEQAATFA 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
             I    G E S+ +S  +L  P+      RPG+ LYG     +    +  ++ V+T ++
Sbjct: 179 RAIDGLHG-ETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDNTLTERLRPVMTMQS 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I  R   AGE V YG +      + + V A+GYADGYP                G   
Sbjct: 238 KVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPN-----------GTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G    ++G+++MDM   D+T      VG  ++++G    L ++A   G + Y L   
Sbjct: 287 LIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVSAYQLPCA 346

Query: 361 IGTRYAKFYT 370
           +  R AK Y 
Sbjct: 347 V-KRVAKVYV 355


>gi|332528049|ref|ZP_08404082.1| alanine racemase [Rubrivivax benzoatilyticus JA2]
 gi|332112622|gb|EGJ12415.1| alanine racemase [Rubrivivax benzoatilyticus JA2]
          Length = 362

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 150/371 (40%), Gaps = 28/371 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   + + AL +N     A + +AR  AVVK NAYG G E+    L   G   F +  
Sbjct: 3   RPIEALVHVPALAHNLQRARAQAPDARVWAVVKANAYGHGIERAYDGLR--GADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  +LR    +  I +L G+  P   ++    +L   +    Q+ + +        H 
Sbjct: 61  LDEAERLRTLGWRGPILLLEGVFEPRDLELCSRLDLWHAVHCDEQIDWLAAH-KTHRPHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG +                      I+H + AD P     + Q+  F 
Sbjct: 120 VFLKMNSGMNRLGFTPAAFRGAWARLGALPQVDEISAITHFSDADGPRGI--AHQIAAFE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAE 239
                  G E  L++S+ +L          R GI LYG      +       +Q  +T  
Sbjct: 178 AATQDLPG-ERCLSNSAALLRH-GVKNDWVRAGILLYGSAPDFPEHDIAHWDLQPTMTLR 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RII  +   AG+ V YG          + + A GYADGYP                G  
Sbjct: 236 SRIIATQTLAAGDTVGYGSSFTAPGPMRVGIVACGYADGYPRL-----------CPTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTN 354
             + G     +G+++MDM   D+++     +G  + ++G       + +D+VA A+GT  
Sbjct: 285 ALVNGRRTRTIGRVSMDMLEVDLSELPDAGIGSEVTLWGRGPGGSVLPIDEVARAAGTIG 344

Query: 355 YDLLVRIGTRY 365
           Y+L+  +  R 
Sbjct: 345 YELMCAVAPRV 355


>gi|319790926|ref|YP_004152566.1| alanine racemase [Variovorax paradoxus EPS]
 gi|315593389|gb|ADU34455.1| alanine racemase [Variovorax paradoxus EPS]
          Length = 366

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 155/374 (41%), Gaps = 29/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   +   AL+NN   +   + +AR  AVVK NAYG G E++   L   G   F +  
Sbjct: 3   RPILATVHTAALRNNLERVRRSALDARVWAVVKANAYGHGIERVYEGLR--GADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R    +  + +L G+   ++ ++    +L   +    Q+   +   +      
Sbjct: 61  LAEAERVRALGWRGPVLLLEGVFDARDLELCSRLDLWHTVHCDEQIDMLAAHKTL-KPQR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + +                   +++H + AD       + QLE F 
Sbjct: 120 VFLKMNSGMNRLGFTPERFGSAWTRLNALTQVDEISLMTHFSDADGARGI--AHQLEAFE 177

Query: 184 TLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTA 238
                  G E S+A+S+  L           RPGI LYG              +Q  +T 
Sbjct: 178 RATRDLPG-ERSIANSAATLRHADQTRGDWVRPGIVLYGSAPDFPLHDAAHWQLQPTMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             +++ ++   AG+ + YG          I VAA+GYADGYP   +            G 
Sbjct: 237 STQLLSVQTLKAGDTIGYGSNFTAEGPLTIGVAAVGYADGYPRHCN-----------TGT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALASGT 352
              + G    ++G+++MDM   D+T     + G  + ++G        + +D+VA A+GT
Sbjct: 286 PVLVNGVRTRMVGRVSMDMITVDLTPVPDAKFGAEVTLWGRSASTGAVLPIDEVAQAAGT 345

Query: 353 TNYDLLVRIGTRYA 366
             Y+L+  +  R  
Sbjct: 346 VGYELMCAVAQRVP 359


>gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A]
          Length = 846

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 151/373 (40%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK +AYG G  +IA +L    V    V   +
Sbjct: 487 LEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     A I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 547 EGSELRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 603

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG ++++         N+       + SH   +D          Q+E 
Sbjct: 604 PIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSSQFDAFTRGQIEL 663

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   + + R GI LYG +   N    +  V 
Sbjct: 664 FEKGSQELQAAFSHKILRHICNTAGIERFPEAQYDMVRLGIGLYGVSPIDN--SIIHNVS 721

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 722 TLKTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRHLG----------RG 771

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++    T  Y+
Sbjct: 772 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLETIPYE 830

Query: 357 LLVRIGTRYAKFY 369
           +L  I TR  + Y
Sbjct: 831 VLTSISTRVKRVY 843


>gi|256848377|ref|ZP_05553820.1| alanine racemase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714975|gb|EEU29953.1| alanine racemase [Lactobacillus coleohominis 101-4-CHN]
          Length = 378

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 152/386 (39%), Gaps = 32/386 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M+S   LR   + +DL AL++N  +  A L   +    VVK +AYG G  ++A  L   G
Sbjct: 1   MNSAR-LRNTNVVVDLGALRHNIRAQKAALPAGSHIFGVVKADAYGNGMTQVAHVLSEEG 59

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           V  F V  ++EG  LR    Q  I VL         +  +  +   + SV  L  Y ++ 
Sbjct: 60  VAGFCVALLDEGFTLRNAGLQETILVLGITPVQYAPLAAENGISLTVGSVDWLKEYQQVA 119

Query: 117 SCGV---SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                       L +DTG  R+G                   +   I +H A  D     
Sbjct: 120 QTNHVRQPLKVHLGLDTGMGRIGFQDVTEFKQALQLVQTPEFEFEGIFTHFATVDSADKT 179

Query: 174 VNSVQLERFRTLIS--HYKGIEASLASSSGILLGPN-YHFQLTRPGISLYGGTDKINKSH 230
               QL +++  ++   ++     +A+S+  L           R GISLYG      +  
Sbjct: 180 YFEHQLTKWKQFLAVVDHRPRYVHMANSATGLWHQQDIESNTVRMGISLYGCNPSGRELQ 239

Query: 231 PM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           P    Q V +       ++K   GE VSYG      +D  +A   +GYADGY   L+G  
Sbjct: 240 PSFELQPVTSLITHATFVKKLHRGESVSYGATYTAQQDEWVATLPVGYADGYRRELTGY- 298

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKL 343
                         + G +  ILG+I MD  M  +   + +  G    + G     +I  
Sbjct: 299 -----------HVLVNGQVCDILGRICMDQMMIRLPHQMPV--GTEAVLLGRSGDQEITA 345

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
            D+A   GT NY++L   G R A+ Y
Sbjct: 346 TDLADQLGTINYEVLTGFGDRLARKY 371


>gi|238794498|ref|ZP_04638107.1| Alanine racemase, catabolic [Yersinia intermedia ATCC 29909]
 gi|238726181|gb|EEQ17726.1| Alanine racemase, catabolic [Yersinia intermedia ATCC 29909]
          Length = 358

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   + L+AL +N   +   +G A+  +VVK NAYG G  +I  AL       F + 
Sbjct: 2   SRPISATLHLSALSHNLSIVRRHAGAAKIWSVVKANAYGHGLARIWQALDA--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
            + E + LR    Q  I +L G    Q+  + D   L  V+ S  QL   +         
Sbjct: 60  DLNEAIMLREQGWQGPILLLEGFFRTQDLALVDHYRLTTVVHSDWQLDAINAARLTAPP- 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++++G NRLG  + +A      + +        ++SH A A   +    S Q  R 
Sbjct: 119 NIYLKLNSGMNRLGFPIGQADAVWQWANSISNIGEVTLMSHFANA--DNHMGASEQFTRI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
           +    H        A+S+ IL  P  H+   RPGI LYG +   +        ++ V+  
Sbjct: 177 QQASGHIAAARC-FANSAAILRNPETHYDWVRPGIILYGASPSGDVNDIAGIGLRPVMGL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II  +   AG  V YG +   T    I V A GYADGYP                G 
Sbjct: 236 HSEIIATQMLSAGHSVGYGSRYSATGTQRIGVVACGYADGYPRLA-----------PSGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G +   +G I+MDM   D+T     +VG  ++I+G ++ +DDVA A+GT  Y+L+
Sbjct: 285 PIRVDGILTHTVGSISMDMLTVDLTPCPQAQVGSKVEIWGDNLPIDDVAAAAGTVGYELM 344

Query: 359 VRIGTRY 365
             + +R 
Sbjct: 345 CALASRV 351


>gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
 gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
          Length = 846

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 151/373 (40%), Gaps = 28/373 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L+++L A+  N +   ++      +   +VK +AYG G  +IA +L    V    V   +
Sbjct: 487 LEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG +LR     A I ++    P     K +FD  L P + +   L    K        + 
Sbjct: 547 EGSELRKAGITASIIIM---DPELTAFKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNF 603

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P  +++DTG +RLG ++++         N+       + SH   +D          Q+E 
Sbjct: 604 PIHVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSSQFDAFTRGQIEL 663

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F       +      I   + +++GI   P   + + R GI LYG +   N    +  V 
Sbjct: 664 FEKGSQELQAAFSHKILRHICNTAGIERFPEAQYDMVRLGIGLYGVSPIDN--SIIHNVS 721

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +  I+ IR     + V Y     L R S IA   IGYADG    L             
Sbjct: 722 TLKTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRHLG----------RG 771

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                + G   P +G I MD+ M D+TD      GD   IFG D+ +  ++    T  Y+
Sbjct: 772 NAYCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLETIPYE 830

Query: 357 LLVRIGTRYAKFY 369
           +L  I TR  + Y
Sbjct: 831 VLTSISTRVKRVY 843


>gi|326405358|ref|YP_004285440.1| alanine racemase [Acidiphilium multivorum AIU301]
 gi|325052220|dbj|BAJ82558.1| alanine racemase [Acidiphilium multivorum AIU301]
          Length = 357

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 191/360 (53%), Gaps = 12/360 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ID  A+  NW ++ A       A VVK +AYGLG   IAPAL  AG + FFV +++E 
Sbjct: 6   LTIDPGAVAANWQALAARHAG-EVAGVVKADAYGLGAALIAPALAAAGCRSFFVATLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR   P ARI VL G  PG+E+ +    L PV+ S+     +        + P  L +
Sbjct: 65  LSLRALLPAARIGVLNGCPPGEEETMRARELRPVLGSLAACARWRGAAGDDEAPPSFLHL 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG NRLGL   EA     +        L+ +++HL  A++P +  N+ Q ERF    + 
Sbjct: 125 DTGMNRLGLDRDEAAHLIAHPTLLDGLGLTHVMTHLVAAEEPDASANAAQRERFAAFAAR 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
           +  +  SLA+SSG+ LGP +   L RPG +LYGG      ++PM+  +   A I+ IR  
Sbjct: 185 FPWLRTSLANSSGLFLGPGFGSDLARPGYALYGGNPTPTAANPMRPAIALAAPILQIRAI 244

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            +GE V Y G  +  R S IA   +GYADG P +LS   +              +G ++P
Sbjct: 245 ASGETVGYNGTWRAARPSRIATIGVGYADGLPRSLSNRLTARW-----------QGKIIP 293

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
           + G+++MD+T FD+T+   I  GD I++ GP   +D +A  +GT  Y++L  +G RY + 
Sbjct: 294 VAGRLSMDLTTFDVTEHPDIAPGDVIELIGPGHDIDAIAAEAGTIGYEILTSLGPRYRRV 353


>gi|209543468|ref|YP_002275697.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531145|gb|ACI51082.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 387

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 132/366 (36%), Positives = 182/366 (49%), Gaps = 13/366 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  N+  +    G      A VK +AYGLG  +I P L  AG + FFV  + E
Sbjct: 19  LTIDLDAVAANYRILRDRVGPRTICGAAVKADAYGLGAARIVPVLAEAGCRTFFVAHLAE 78

Query: 68  GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G  +R L    A IFVL G  PG E  + +  L+PV++S+ Q+  +  L    G   P A
Sbjct: 79  GAAIRPLLGTDATIFVLNGAMPGTEAALHEHGLVPVLNSLEQIARWRDLARQAGRDLPAA 138

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           LQVD+G +R GLS  +         +       L++SHLACAD+P+   N  Q   F  L
Sbjct: 139 LQVDSGMSRFGLSDADVDALAARDGSLAGITPLLVMSHLACADEPAHPSNHAQRAAFLRL 198

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +      ASLA+SSG+ +G ++HF + RPG +LYG        +PMQ VV  +ARI+  
Sbjct: 199 RARLPAAPASLAASSGLFMGSDWHFDMVRPGAALYGINPTPGWPNPMQPVVRLQARIVQT 258

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G  V YG      R S IA  A+GY DG+P    G      P             
Sbjct: 259 RWIGPGTAVGYGAAFIADRPSRIATLAVGYGDGFPRAAGGHGHAVLPERPAA-------- 310

Query: 306 MVPILGKITMDMTMFDITDSLSI--EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            +PI+G+I+MD    D+TD      + G  + + GP   +D  A A+GT  Y+LL  +G 
Sbjct: 311 KLPIIGRISMDCLAVDVTDIGDAPLDAGTALDLIGPHHSIDSAAAAAGTIGYELLTGLGA 370

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 371 RYHRLY 376


>gi|86131244|ref|ZP_01049843.1| Alanine racemase [Dokdonia donghaensis MED134]
 gi|85818655|gb|EAQ39815.1| Alanine racemase [Dokdonia donghaensis MED134]
          Length = 366

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 158/370 (42%), Gaps = 21/370 (5%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+IDL AL++N+  M   +S   +  AVVK  AYG   + +A  L    V  F V  VE
Sbjct: 5   RLEIDLRALRHNYAYMRSKVSPGVKVMAVVKAFAYGSDAQVVAQELEKLNVDYFAVAYVE 64

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--HPY 124
           EGV LR       I VL+   P   + + +  L P I S   L  +S          +P 
Sbjct: 65  EGVALRDAGITTPILVLHP-QPDNFETLLERCLEPNIYSRRMLEMFSAFAKAKKQTAYPI 123

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFR 183
            L+ +TG NRLG + ++      N    +  ++  + SHLA ++D         Q+ +F 
Sbjct: 124 HLKFNTGLNRLGFTGEDVPWIVKNVLKSEHLKVKSLFSHLAASEDLDERDFTLHQIAQFD 183

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
            + +  K          + ++SGI+  PN H+   R GI LYG  +   ++  ++ V   
Sbjct: 184 EIANEIKTQLGYAPFMHMTNTSGIINYPNAHYDCVRTGIGLYGYGNTPEETANLKPVARL 243

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + I        G+ V Y          + A   IG+ADG                   G
Sbjct: 244 NSVISQKHIINPGDSVGYNRALVAKEKMVTATIPIGHADGISRAYGNGV----------G 293

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I G   P +G + MDM M ++T+    E GD ++IFG     + ++    + +Y+LL
Sbjct: 294 YVTIAGEKAPFVGNVCMDMIMVNVTNIA-CEEGDDVEIFGTQTGAETLSQQVQSISYELL 352

Query: 359 VRIGTRYAKF 368
             +G R  + 
Sbjct: 353 TMVGQRVKRV 362


>gi|251812207|ref|ZP_04826680.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876517|ref|ZP_06285383.1| alanine racemase [Staphylococcus epidermidis SK135]
 gi|251804304|gb|EES56961.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294769|gb|EFA87297.1| alanine racemase [Staphylococcus epidermidis SK135]
          Length = 382

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 161/382 (42%), Gaps = 30/382 (7%)

Query: 3   SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R     ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 2   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSC 118
           F V +++E ++LR++   A++ VL  +     +      +   + S         ++   
Sbjct: 62  FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 121

Query: 119 GVSHPY-ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              + +  +++DTG  R+G+  + E  +       +       + +H A AD+P + +N 
Sbjct: 122 NQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKRDHLVFEGVFTHFASADEPGNSMNE 181

Query: 177 VQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
            Q   F+ +++   K I     +S+G LL         R GISLYG         N    
Sbjct: 182 -QYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      +  + ++   AGE VSYG       +  IA+  IGYADGY  ++ G      
Sbjct: 241 LRPSAQLVSETVQVKTLKAGETVSYGRTYIADEEMTIAILPIGYADGYLRSMQG------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                     + G    ++G+I MD  +  +     ++ G+ + +    +      + VA
Sbjct: 295 ------AFVNVNGSQCEVIGRICMDQLIVKVPSH--VKTGEKVILMDNHVDSPQSAEAVA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++L  +  R  + Y
Sbjct: 347 NKQGTINYEVLCNLSRRLPRIY 368


>gi|302524053|ref|ZP_07276395.1| alanine racemase [Streptomyces sp. AA4]
 gi|302432948|gb|EFL04764.1| alanine racemase [Streptomyces sp. AA4]
          Length = 373

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 95/368 (25%), Positives = 161/368 (43%), Gaps = 21/368 (5%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S+      IDL AL++N   + A +  A    VVK + YG G   +  A   AG      
Sbjct: 4   SSPHAETVIDLGALRHNVSLLAARAPGAAVMCVVKADGYGHGAVPVGRAAVEAGASWLGT 63

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVS 121
            S++E + LR      R+F    +         + ++   +SS+       +     G  
Sbjct: 64  CSLQEALDLRAAGLSGRLFSWLDVPELDFTPGIEADIDLGVSSLGELARVEAAAERAGKR 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L++DTG +R G       +    +   +  ++  I SHLACAD+        Q + 
Sbjct: 124 ARVHLKIDTGLSRNGCPPAAWPELVEAAAKARGVEVVAIWSHLACADELGHASIDAQAKL 183

Query: 182 F--RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           F      +   G++    LA+S+  L  P+ HF+L RPGI++YG          ++ V+T
Sbjct: 184 FAEAYDAARAAGLDPIRHLANSAATLTRPDLHFELVRPGIAMYGLNPVP-TDDDLRPVMT 242

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++L +   AGE VSYG       D+ +A+  +GYADG P TLSG            
Sbjct: 243 FRSTVVLTKPLAAGESVSYGHTWTAREDTTLALVPVGYADGVPRTLSGRMD--------- 293

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353
              ++ G   P++G+I MD  + ++ +     VGD + +FG     +    + A   GT 
Sbjct: 294 --VWLGGKRRPVVGRICMDQLVVNVGNEDVPTVGDEVVLFGAGRSGEPTAREWADKLGTI 351

Query: 354 NYDLLVRI 361
           +Y+++  +
Sbjct: 352 DYEIVTSM 359


>gi|294648818|ref|ZP_06726275.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194]
 gi|292825310|gb|EFF84056.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194]
          Length = 375

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 148/375 (39%), Gaps = 28/375 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+ N   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAIIHTQALRQNLELLRTTVPNSKVFAVVKANAYGHGIERVYDAFKT--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  +LR       I +L GI  P          L   + S  QL +  + +       
Sbjct: 61  IEEAKRLRALGWTGPILLLEGIFSPQDLFDCAQYQLSFTVHSEHQLEWLQQHIYPA-QFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP--SSHVNSVQLER 181
             L++++G NRLG   Q+      +            + H + AD           QL  
Sbjct: 120 IFLKMNSGMNRLGFKPQQYRQVWRHLQRLNNVAKITHMMHFSDADGQRFGQAGVDYQLAE 179

Query: 182 FRTLISHYKGIEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F T I    G E S+++S+ IL  P   H    R GI LYG +        +   +   +
Sbjct: 180 FETHIQDLPG-ERSVSNSAAILRYPTQLHSDYVRGGIMLYGSSPDYPQHSIQDWGLAPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + +I I++    E V YG          + + A GYADGY                 
Sbjct: 239 SLRSELIAIQQLKTNESVGYGSSFVAEHAMSVGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    + G     +G+++MDM   D+T   + E+G  + ++G       + +DDVA ASG
Sbjct: 288 GTPILVNGIRTRTIGRVSMDMLAVDLTPVPNAEIGSEVVLWGTSKTGSILPIDDVAAASG 347

Query: 352 TTNYDLLVRIGTRYA 366
           T  Y+L+  +  R  
Sbjct: 348 TVGYELMCGVTARVK 362


>gi|261839727|gb|ACX99492.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori 52]
          Length = 377

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 172/381 (45%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSTVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKICALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG   TL         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRTLGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIEAKEGDEVILFGDKSTKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|308184724|ref|YP_003928857.1| alanine racemase [Helicobacter pylori SJM180]
 gi|308060644|gb|ADO02540.1| alanine racemase [Helicobacter pylori SJM180]
          Length = 377

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 94/382 (24%), Positives = 171/382 (44%), Gaps = 32/382 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+H++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFHAVKSIVPKDACIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  ++ S+ Q   +S+  +         +
Sbjct: 68  ALELRSHFSKTPILILGYSPNANASMLVDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHI 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTD--KINKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG     ++ +S P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +ARI+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKARIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + D    + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-EAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
              T  Y+ +  +  R  + Y 
Sbjct: 356 LLNTIPYETISTLSKRLERVYV 377


>gi|197103527|ref|YP_002128904.1| alanine racemase [Phenylobacterium zucineum HLK1]
 gi|196476947|gb|ACG76475.1| alanine racemase [Phenylobacterium zucineum HLK1]
          Length = 382

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 189/366 (51%), Gaps = 19/366 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL+A++ N+ ++   +  AR AAVVK +AYGLG   ++ AL   G +DFFV  + E ++
Sbjct: 16  IDLSAVRENFRALARHAAPARLAAVVKADAYGLGAGPVSEALAAEGCRDFFVAHLSEALE 75

Query: 71  LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQV 128
           L+   P  AR++VL G+  G+E       ++PV++S+ Q   +S+L   G +  P  LQ+
Sbjct: 76  LKPVLPEDARLYVLNGLAAGREPACAAAGVLPVLNSLDQAERWSRLAPDGGAAPPAVLQI 135

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G +RLGL   E      ++      ++ L++SHLACAD+P    N+ Q E F  L + 
Sbjct: 136 DSGMSRLGLPEAEVRRLAGDADLLGRLRIDLLMSHLACADEPDHPANAAQAEAFDRLAAA 195

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
                 SLA+S G LLGP +  QL R G+ L+GG     +    + VV   A ++ +R  
Sbjct: 196 LPDWPRSLANSHGALLGPRFRHQLVRSGVFLFGGVRS--QVLSPRPVVRLTAPVVQVRDV 253

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            AG  V YG        + IA  A+GYADG+   L+            G      G  +P
Sbjct: 254 PAGAGVGYGFAHVTRAPARIATVALGYADGWSWNLA-----------EGWPALFDGQTLP 302

Query: 309 ILGKITMDMTMFDITDSLSI----EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           + G+++MD    D+T   +     + GD ++  G    + D A A+GT  Y++L R+G R
Sbjct: 303 VAGRVSMDSITLDVTAFEAAGGRLQPGDEVEFLGAGRDIVDAAEAAGTIPYEILTRMGRR 362

Query: 365 YAKFYT 370
             + Y 
Sbjct: 363 LQRRYV 368


>gi|229816616|ref|ZP_04446914.1| hypothetical protein COLINT_03673 [Collinsella intestinalis DSM
           13280]
 gi|229807822|gb|EEP43626.1| hypothetical protein COLINT_03673 [Collinsella intestinalis DSM
           13280]
          Length = 383

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 167/385 (43%), Gaps = 30/385 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            +   +ID  AL+ N  +  +L G   R   VVK +AYG G    A  ++ AG   F V 
Sbjct: 10  RWAWAEIDTGALRRNTRAFKSLVGPRQRLCCVVKADAYGHGVANCAKVMHAAGADMFAVA 69

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
           +V EGV LR    +  I +L     G    + + +++P + S      +  +  + G   
Sbjct: 70  TVLEGVALREAGQKLPILLLSEPPQGAIDTLLEYDIMPSVYSPEFAWAYGERAAALGRVG 129

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            Y + ++TG NR+G+   E +DF  +       +     +H A ADDP    + +Q +RF
Sbjct: 130 KYHMAINTGMNRIGVHCTEVVDFRRSVDFHAGLECDGTFTHFATADDPDGWDHQLQCKRF 189

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTV 235
              IS  +            ++ G +L P  HF + R GI LYG       +   P++ V
Sbjct: 190 TEAISALREAGFDPGIVHCDNTPGSVLNPAMHFDMIRAGIGLYGLQPCERTASVLPLEPV 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSV 294
           ++  AR+        GE V YG   ++ R  + +    IGYADG P  LS          
Sbjct: 250 MSIRARVTHACYPAMGEGVGYGFTYRVPRTRVEVCTLPIGYADGLPRVLSNRMD------ 303

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITD-----SLSIEVGDYIQIFGPD----IKLDD 345
                   +G  +  +G I MD  M  +++     +   EVGD + I G D    I LD+
Sbjct: 304 -----VLFRGERIRQVGNICMDQCMVAVSETSLRPTQEAEVGDLMTIVGRDGDAQITLDE 358

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +A A GT NY+L    G R  K Y 
Sbjct: 359 LARACGTINYELACGFGMRLEKIYV 383


>gi|188595861|pdb|2VD8|A Chain A, The Crystal Structure Of Alanine Racemase From Bacillus
           Anthracis (Ba0252)
 gi|188595862|pdb|2VD8|B Chain B, The Crystal Structure Of Alanine Racemase From Bacillus
           Anthracis (Ba0252)
          Length = 391

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 153/387 (39%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVV  NAYG     +A     AG
Sbjct: 3   MEEAPFYRDTWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVXGNAYGHDYVPVAXIALEAG 62

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +     L 
Sbjct: 63  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQXEWVDEAIXLW 122

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+  + E   F  +       +L  + +H A AD+  +   
Sbjct: 123 DGSSTMXYHINFDSGMGRIGIRERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYF 182

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227
             Q   F   +S              A+S+  L      F   R GI++YG +  +    
Sbjct: 183 DXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 242

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++    +  I++ + G+ +SY    +   +  IA  AIGYADG+   L G 
Sbjct: 243 FLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGF 302

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                       +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 303 ------------EVLVNGXRVPIVGRVTMDQFMIHLP--CEVPLGTXVTLIGRQGDEYIS 348

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 349 ATEVAEYSGTINYEIITTISFRVPRIF 375


>gi|162146534|ref|YP_001600993.1| alanine racemase, catabolic [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785109|emb|CAP54653.1| putative alanine racemase, catabolic [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 387

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 132/366 (36%), Positives = 181/366 (49%), Gaps = 13/366 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  N+  +    G      A VK +AYGLG  +I P L  AG   FFV  + E
Sbjct: 19  LTIDLDAVAANYRILRDRVGPRTICGAAVKADAYGLGAARIVPVLAEAGCHTFFVAHLAE 78

Query: 68  GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           G  +R L    A IFVL G  PG E  + +  L+PV++S+ Q+  +  L    G   P A
Sbjct: 79  GAAIRPLLGTDATIFVLNGAMPGTEAALHEHGLVPVLNSLEQIARWRDLARQAGRDLPAA 138

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           LQVD+G +R GLS  +         +       L++SHLACAD+P+   N  Q   F  L
Sbjct: 139 LQVDSGMSRFGLSDADVDALAARDGSLAGITPLLVMSHLACADEPAHPANHAQRAAFLRL 198

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +      ASLA+SSG+ +G ++HF + RPG +LYG        +PMQ VV  +ARI+  
Sbjct: 199 RARLPAAPASLAASSGLFMGSDWHFDMVRPGAALYGINPTPGWPNPMQPVVRLQARIVQT 258

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G  V YG      R S IA  A+GY DG+P    G      P             
Sbjct: 259 RWIGPGTAVGYGAAFIADRPSRIATLAVGYGDGFPRAAGGHGHAVLPERPAA-------- 310

Query: 306 MVPILGKITMDMTMFDITDSLSI--EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
            +PI+G+I+MD    D+TD      + G  + + GP   +D  A A+GT  Y+LL  +G 
Sbjct: 311 KLPIIGRISMDCLAVDVTDISDAPLDAGTALDLIGPHHSIDSAAAAAGTIGYELLTGLGA 370

Query: 364 RYAKFY 369
           RY + Y
Sbjct: 371 RYHRLY 376


>gi|163814916|ref|ZP_02206304.1| hypothetical protein COPEUT_01067 [Coprococcus eutactus ATCC 27759]
 gi|158449855|gb|EDP26850.1| hypothetical protein COPEUT_01067 [Coprococcus eutactus ATCC 27759]
          Length = 377

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 94/383 (24%), Positives = 160/383 (41%), Gaps = 25/383 (6%)

Query: 1   MHSNEFL-R--LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M++  F  R    IDL  L++N  ++   L       AV+K + Y  G   + P L   G
Sbjct: 1   MNNRPFAGRTAAVIDLAKLRSNIANIKSRLKPGVEFIAVMKGDGYRHGIAGLYPTLKECG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKL 115
           +  + V   EEG  LR       I +L              +L   + S+       +  
Sbjct: 61  IDSYAVAIWEEGKMLRDAGATESILILGDTADDMLDEAAKYDLDLTVFSMEGAENMAAAA 120

Query: 116 MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
              G      ++++TG NR+G  + QE+ D        +   ++ I +H A AD+     
Sbjct: 121 RRAGKKQNVQIKLNTGMNRIGFPVCQESFDTIKKICEMEDLNVTGIFTHFARADEGDHTS 180

Query: 175 NSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              QL+ +   ++  + +     +  +A+S  IL+ P       R G  LYG T   +  
Sbjct: 181 ARKQLDLYLHAVNELEKMGVVIPKHHVANSPAILMLPEAQLDAVRCGDILYGLTPSDDFD 240

Query: 230 H---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                +Q +++    + ++++  AG  V YGG     R + IA   +G+ADGY   LS  
Sbjct: 241 WKNSGLQEILSWYTYVAMVKEVPAGSEVGYGGTFVTERPTKIATLPVGFADGYSRYLSN- 299

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                      GK  I G+  PI+G++ MD  M DITD   ++ GD + + G  + ++D+
Sbjct: 300 ----------KGKVIINGHEAPIIGRVCMDQCMADITDIPDVQRGDTVTLLGEGMSIEDM 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T    ++  I  R  + Y
Sbjct: 350 ANMLDTNVDVIVCNISVRVPRVY 372


>gi|82703234|ref|YP_412800.1| alanine racemase [Nitrosospira multiformis ATCC 25196]
 gi|123544120|sp|Q2Y763|ALR_NITMU RecName: Full=Alanine racemase
 gi|82411299|gb|ABB75408.1| alanine racemase [Nitrosospira multiformis ATCC 25196]
          Length = 357

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 165/370 (44%), Gaps = 20/370 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  ++  ID  AL+ N   +   +  +R  AV+K +AYG G      A   A  + F + 
Sbjct: 2   SRPIQALIDPAALERNLAIVRRHAPRSRVMAVIKADAYGHGLLC--AAEALAEAEGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            ++  V+LR    +  I +L G     E   I    L  V+    QL     +     + 
Sbjct: 60  ELDAAVRLREAGYRQTILLLEGFFDIDELSWIEQYRLSTVVHHPEQLAMLEAVRRRA-TL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
              L++++G NRLG +  E      +       +   +++H ACAD+P  +   + QL+ 
Sbjct: 119 DVFLKLNSGMNRLGFTPTEFPAALEHLKANPAVRQITLMTHFACADEPDRNDSIAAQLQC 178

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTA 238
           F  L +  + +  SLA+S+ IL  P  H    RPGI LYG +       +   +Q  +T 
Sbjct: 179 FN-LAAGGRYMPRSLANSAAILRFPEAHADWVRPGIMLYGSSPLAHTTAEQLGLQPAMTV 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +RII ++     + V YG   +      + + A GYADGYP                G 
Sbjct: 238 SSRIISVQTLRPNDGVGYGHAFRAGSSMRVGIVAGGYADGYPRHA-----------PTGT 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              +KG    I+G+I+MDM   D+++     VG  + ++G  + +D+VA A+GT  Y+LL
Sbjct: 287 PVLVKGRRTRIVGRISMDMLHVDLSEIEDAGVGSPVTLWGRGMPVDEVARAAGTLGYELL 346

Query: 359 VRIGTRYAKF 368
             I  R  + 
Sbjct: 347 CAIAPRMQRV 356


>gi|161407967|ref|YP_001015793.2| alanine racemase [Prochlorococcus marinus str. NATL1A]
          Length = 402

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 166/383 (43%), Gaps = 29/383 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                +++D   ++NN   +    G+     AVVK + YG G E +A +    G     V
Sbjct: 29  RSRAWVEVDSKIIENNARVLKNFIGDDCSLMAVVKADGYGHGAETVAKSALTGGADSLGV 88

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCG-V 120
            ++EEG++LR    + +I +L  +   +E    F  +LIP IS + +    + +      
Sbjct: 89  ATLEEGIQLRNAGLKCQILILGNLINSEELYSSFCWDLIPTISGIREAIICNNIAENKHK 148

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-----DPSSHVN 175
                L+VDTG  RLG    E  D        +   L  I SHLA AD     +   +  
Sbjct: 149 KFFIHLKVDTGMTRLGCDCDEVKDLISKIDYLENISLKGIYSHLAIADKDLEKNTKLNFT 208

Query: 176 SVQLERFRTLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKS 229
            +Q+ RF  ++       K +   LA+S+G L     HF + R G+SLYG          
Sbjct: 209 QIQVTRFEKVLKDLGARNKSLCRHLANSAGTLSDSRLHFDMVRVGLSLYGYFPVNDFESD 268

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  +  ++R+ L+R+   G  V YG   K  R S +AV AIGYADG    LSG  S 
Sbjct: 269 LRLKPALKVKSRVTLVREVEKGIGVGYGHFFKTQRKSKLAVVAIGYADGVSRNLSGKISA 328

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       I G +VP +G I MD  +FDITD   I  G  + + G D    I   +
Sbjct: 329 S-----------IDGVLVPQVGAIAMDQMVFDITDKPDIRTGQVLTLLGTDGAVCISPQN 377

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
               SG+  +++L     R  + 
Sbjct: 378 WCDLSGSIPWEVLCGFRNRLPRV 400


>gi|123961746|gb|ABM76529.1| putative Alanine racemase [Prochlorococcus marinus str. NATL1A]
          Length = 427

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 166/383 (43%), Gaps = 29/383 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                +++D   ++NN   +    G+     AVVK + YG G E +A +    G     V
Sbjct: 54  RSRAWVEVDSKIIENNARVLKNFIGDDCSLMAVVKADGYGHGAETVAKSALTGGADSLGV 113

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCG-V 120
            ++EEG++LR    + +I +L  +   +E    F  +LIP IS + +    + +      
Sbjct: 114 ATLEEGIQLRNAGLKCQILILGNLINSEELYSSFCWDLIPTISGIREAIICNNIAENKHK 173

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-----DPSSHVN 175
                L+VDTG  RLG    E  D        +   L  I SHLA AD     +   +  
Sbjct: 174 KFFIHLKVDTGMTRLGCDCDEVKDLISKIDYLENISLKGIYSHLAIADKDLEKNTKLNFT 233

Query: 176 SVQLERFRTLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKS 229
            +Q+ RF  ++       K +   LA+S+G L     HF + R G+SLYG          
Sbjct: 234 QIQVTRFEKVLKDLGARNKSLCRHLANSAGTLSDSRLHFDMVRVGLSLYGYFPVNDFESD 293

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  +  ++R+ L+R+   G  V YG   K  R S +AV AIGYADG    LSG  S 
Sbjct: 294 LRLKPALKVKSRVTLVREVEKGIGVGYGHFFKTQRKSKLAVVAIGYADGVSRNLSGKISA 353

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       I G +VP +G I MD  +FDITD   I  G  + + G D    I   +
Sbjct: 354 S-----------IDGVLVPQVGAIAMDQMVFDITDKPDIRTGQVLTLLGTDGAVCISPQN 402

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
               SG+  +++L     R  + 
Sbjct: 403 WCDLSGSIPWEVLCGFRNRLPRV 425


>gi|315107293|gb|EFT79269.1| alanine racemase [Propionibacterium acnes HL030PA1]
          Length = 375

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 149/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-SVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFPRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|88807916|ref|ZP_01123427.1| alanine racemase [Synechococcus sp. WH 7805]
 gi|88787955|gb|EAR19111.1| alanine racemase [Synechococcus sp. WH 7805]
          Length = 393

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 174/379 (45%), Gaps = 26/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   +++   A++ N  ++   L       AVVK + YG G E +A A    G     V
Sbjct: 23  RQRAWMEVSAQAVEKNARALKGILKPGCALMAVVKADGYGHGAETVARAAICGGAASLGV 82

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
            +++EG++LR    +  + VL  +   ++ +      L+P +SS+ +      L S  G 
Sbjct: 83  ATLQEGIELRRAGLELPVLVLGNLIQAEDLRACLHWQLMPTLSSMREALLCQNLASGSGR 142

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD----DPSSHVNS 176
                L++DTG  RLG   Q+    T          L  + SHLA AD      +  +  
Sbjct: 143 RFSVQLKLDTGMTRLGCDWQDGSRLTAAIQQLDHLMLRGVYSHLAMADGGPEGDAERITR 202

Query: 177 VQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPM 232
           +Q ERF  +    +   ++  LA+S+G L  P+ H    R G++LYG +    +N+S  +
Sbjct: 203 LQQERFDAVTRSLRSEALQLHLANSAGTLRDPSLHHDQVRVGLALYGHSPSQHLNQSVHL 262

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +  +AR+ LIR   AG  VSYG +   +R S +AV  IGYADG   +LSG  S    
Sbjct: 263 EPAMGVKARVSLIRVVPAGVGVSYGHRFITSRPSRLAVVGIGYADGVSRSLSGQIS---- 318

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                      G  +P +G ITMD  + D TD  +++VGD + + G D    I   + A 
Sbjct: 319 -------VLHAGQRLPQVGAITMDQLLVDATDHPALDVGDVVTLLGSDGEEVIHPLEWAE 371

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T  +++L     R  +
Sbjct: 372 LSHTIPWEVLCSFKHRLPR 390


>gi|330470100|ref|YP_004407843.1| alanine racemase [Verrucosispora maris AB-18-032]
 gi|328813071|gb|AEB47243.1| alanine racemase [Verrucosispora maris AB-18-032]
          Length = 372

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 107/379 (28%), Positives = 170/379 (44%), Gaps = 31/379 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +++DL A++ N   M A +  A   AVVK + YG G    A A  +AG     V +++
Sbjct: 4   AEVRVDLDAIRENVDRMRAGTS-AELMAVVKADGYGHGMVPAARAALDAGATWLGVCTLD 62

Query: 67  EGVKLRLYTPQARIF--VLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHP 123
           E + LR     A +   +L    P    +  D +L   ++S+PQ                
Sbjct: 63  EALALRAAGIDAPVLAWLLAPGLPLHTGVAADVDL--GVASLPQLDEAVEASRRAQRPAR 120

Query: 124 YALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L++DTG +R G ++ +    LD    +    L ++  + SH   AD P       QL 
Sbjct: 121 VHLKIDTGLSRNGATVADWPALLDAAAKAQADGLVEVVGVWSHFVYADMPGHPTTDRQLA 180

Query: 181 RFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            F   ++       +     LA+S+  L  P+ HF L RPG+++YG +    ++H ++  
Sbjct: 181 VFHEGLAMVERAGLRPRYRHLANSAATLTRPDTHFDLVRPGLAVYGLSPVAGETHGLRPA 240

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +TA AR++L ++  AG  VSYG      RD+ +AV  +GYADG P   S           
Sbjct: 241 MTARARVMLTKRVPAGTGVSYGHTYTTERDANLAVVPLGYADGVPRHASNT--------- 291

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             G   + G    I G++ MD  + D  D   +  GD   +FG     +   DD A A G
Sbjct: 292 --GPVQLGGRRRTISGRVCMDQFVLDCGDDP-VAAGDVATLFGSGADGEPTADDWAEAVG 348

Query: 352 TTNYDLLVRIG-TRYAKFY 369
           T NY+++ R G +R  + Y
Sbjct: 349 TINYEIVTRFGSSRVPRVY 367


>gi|300362411|ref|ZP_07058587.1| alanine racemase [Lactobacillus gasseri JV-V03]
 gi|300353402|gb|EFJ69274.1| alanine racemase [Lactobacillus gasseri JV-V03]
          Length = 376

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 147/382 (38%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +K++L A+K N  + M  L    +  AVVK N YG G  ++A      G   F V
Sbjct: 6   HRPAVVKVNLGAIKRNIENEMQHLEPGQKMLAVVKANGYGHGAVEVAKLADQVGAAGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++E ++LR       I VL  + P    I    ++   + ++  L    K L +  + 
Sbjct: 66  AILDEALELRRADITKTILVLGVVSPEYAPIAAANDISLTVPNLEWLKEAEKYLENSDLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G +   + +       N     +  + +H A AD         Q E
Sbjct: 126 LKIHLGIDSGMGRIGFNEDKDFIAANKFLKNNDNFYIEGMFAHFASADSSDETYFKHQCE 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232
           +F  + S    K     + +++  +        L R GI +YG     N + P       
Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPNSPDLKSKIA 245

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
               ++ E+ +  ++    G+ V YG      +D++I    +GYADG+     G      
Sbjct: 246 LDPALSFESELTHVKTIHQGDGVGYGSTFVANKDTIIGTVPVGYADGFIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVA 347
                  K  +     PI+G+I MD  M ++   +   +G  + I   +      +   A
Sbjct: 301 -------KVKVGNAYCPIVGRICMDQFMVEMPKEMP--IGTKVVIISNNPDDPNNIKAAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++   +  R  + Y
Sbjct: 352 DYVDTIHYEVACLLNDRLPRVY 373


>gi|323127979|gb|ADX25276.1| alanine racemase [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 366

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 153/376 (40%), Gaps = 25/376 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     +++L A+K N  S+        +T AVVK +AYG G  +++ AL    V  + V
Sbjct: 6   HRPTVARVNLQAIKENVASVQENIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-VDGYCV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I +L  + P + ++     +   ++S+  L    +        
Sbjct: 65  SNLDEALQLRQAGIDKEILILGVLLPNELELAITRQVTVTVASLEWLAMAKQEWPDLKGL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++D+G  R+GL     +D           ++  I +H A AD+  +     QL  F
Sbjct: 125 KVHIKIDSGMGRIGLRSVTEVDNLIAGLKSMGAEVEGIFTHFATADEADTVKFEQQLTFF 184

Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
             L+            ++S+  L      F   R GI +YG      ++    P++    
Sbjct: 185 TNLVDQLADKPSLVHASNSATSLWHSETIFNAVRLGIVMYGLNPSGSELALPFPLKEAFN 244

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E+ ++ +++   GE V YG   K      +    IGYADG+   + G            
Sbjct: 245 LESVLVHVKEIAPGETVGYGATYKAQTSEYVGTVPIGYADGWTRDMQGFT---------- 294

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               ++     I+G+++MD     +  +  +  G  + + G D    I   D+A    T 
Sbjct: 295 --VLVERQPCEIIGRVSMDQMTIRLPRAYPL--GTKVTLIGQDQEKVISTTDIANYRNTI 350

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +  R  + Y
Sbjct: 351 NYEVLCLLSDRVPRVY 366


>gi|304413460|ref|ZP_07394933.1| alanine racemase [Candidatus Regiella insecticola LSR1]
 gi|304284303|gb|EFL92696.1| alanine racemase [Candidatus Regiella insecticola LSR1]
          Length = 378

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 162/385 (42%), Gaps = 40/385 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
             +   + L+AL +N  ++       N++  +VVK NAYG G  ++   L       F +
Sbjct: 3   RPISATVHLSALHHNLVAVRDRVSYANSKIWSVVKANAYGHGLARVWRCLEK--TDGFAL 60

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVS 121
             + + V LR    Q  I +L G    ++  + D  NL  V+ S  QL            
Sbjct: 61  LDLNDAVLLREQGWQKPILLLEGFFKTEDLALIDHYNLTTVVHSDWQLAALENA-KLKKP 119

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L+ ++G NRLG   +EA +    +      +   ++SH A A    +  N     R
Sbjct: 120 VEVYLKFNSGMNRLGFPCEEAHEIWQRAKQIANIKHLTLMSHFANAAHNGNIDNEY---R 176

Query: 182 F-RTLISHYKGIEASLASSSGILLGP--------------NYHFQ-LTRPGISLYGGTDK 225
           F +          +SLA+S+ IL  P                HF    RPGI LYG +  
Sbjct: 177 FIQQNCQSIPADCSSLANSAVILWHPSVYTSPINNLSNNNLSHFCHWVRPGIMLYGASPN 236

Query: 226 IN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                 K   ++  ++  + ++ ++   AG+ V YG   +      I + A GYADGYP 
Sbjct: 237 GQVQAIKDLGLRPAMSLHSELLAVQTLKAGDTVGYGSHYRANEAQRIGIVACGYADGYPR 296

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341
                      +   G    ++G +   LG ++MDM   D+      +VG  ++++G  +
Sbjct: 297 -----------NAPTGTPILVEGVLTKTLGAVSMDMLAVDLKPCPHAQVGSIVELWGNHL 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYA 366
            +DDVA+A+GT +Y+L+  +  R  
Sbjct: 346 PIDDVAMAAGTISYELMCALSARVP 370


>gi|148261853|ref|YP_001235980.1| alanine racemase [Acidiphilium cryptum JF-5]
 gi|226711024|sp|A5G2H9|ALR_ACICJ RecName: Full=Alanine racemase
 gi|146403534|gb|ABQ32061.1| alanine racemase [Acidiphilium cryptum JF-5]
          Length = 357

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 130/360 (36%), Positives = 189/360 (52%), Gaps = 12/360 (3%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ID  A+  NW ++ A       A VVK +AYGLG   IAPAL  AG + FFV +++E 
Sbjct: 6   LTIDPGAVAANWQALAARHTG-EVAGVVKADAYGLGAALIAPALAAAGCRSFFVATLDEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR   P ARI VL G  PG+E  +    L PV+ S+     +        + P  L +
Sbjct: 65  LSLRALLPAARIGVLNGCPPGEEGTMRARELRPVLGSLAACARWRGAAGDDKAPPSFLHL 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG NRLGL   EA     +        L+ +++HL  A++P +  N+ Q ERF    + 
Sbjct: 125 DTGMNRLGLDRDEAAHLIAHPTLLDGLGLTHVMTHLVAAEEPDASANAAQRERFAAFAAR 184

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
           +  +  SLA+SSG+ LGP +   L RPG +LYGG      ++PM+  +   A I+ IR  
Sbjct: 185 FPWLRTSLANSSGLFLGPGFGSDLARPGYALYGGNPTPTAANPMRPAIALAAPILQIRAI 244

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            +GE V Y G  +  R S IA   +GYADG P +LS   +              +G ++P
Sbjct: 245 ASGETVGYNGTWRAARPSRIATIGVGYADGLPRSLSNRLTARW-----------QGKIIP 293

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
           + G+++MD+T FD+TD   I  GD I++ GP   +D  A  +GT  Y++L  +G RY + 
Sbjct: 294 VAGRLSMDLTTFDVTDHPDIAPGDVIELIGPGHDIDAFAAEAGTIGYEILTSLGPRYRRV 353


>gi|322390146|ref|ZP_08063680.1| alanine racemase [Streptococcus parasanguinis ATCC 903]
 gi|321143177|gb|EFX38621.1| alanine racemase [Streptococcus parasanguinis ATCC 903]
          Length = 370

 Score =  350 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 154/378 (40%), Gaps = 25/378 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +     ++DL A+  N   ++    +     AVVK NAYG G   +   L    V  F 
Sbjct: 5   KHRPTVARVDLDAIAFNVQQVSDHIPSQALKYAVVKANAYGHGVVAVTKKL-APQVDGFC 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V++++E +++R    Q  I +L  +      +  + ++   ++S+  L       +    
Sbjct: 64  VSNMDEALEIREEGLQHPILILGVVPSETVNLAKEHDIRLTVASLAWLDQLLGQEADLSG 123

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++VD+G  R+G    E +            ++  I +H A AD+        Q + 
Sbjct: 124 LKVHIKVDSGMGRIGFRRIEEIKEAERLLLAAGAEIEGIFTHFATADEADDRKFQAQYQF 183

Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
           F+ +++  + +      ++S+  L   +  F   R G  +YG       +   + ++  +
Sbjct: 184 FKEVLAALETLPPIVHASNSATSLWHADTIFTAVRLGDVMYGLNPSGSVLALPYEIKPAL 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + ++ +++  AG+ + YG          I    IGYADG+   +             
Sbjct: 244 SLVSELVHVKQLEAGQDIGYGATYTTEDAQWIGTIPIGYADGWIREMQNF---------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             +  IK    PI+G+++MD     + + L +  G  + + G D    I   ++A   GT
Sbjct: 294 --QVLIKSEFCPIVGRVSMDQITVRLPEELPL--GTKVTLIGRDGEKEITATEIADYRGT 349

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY+++  +  R  + YT
Sbjct: 350 INYEVVCLLSDRIPRDYT 367


>gi|332557893|ref|ZP_08412215.1| alanine racemase [Rhodobacter sphaeroides WS8N]
 gi|332275605|gb|EGJ20920.1| alanine racemase [Rhodobacter sphaeroides WS8N]
          Length = 349

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 187/363 (51%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  NW +++ + + + +T AVVK ++YGLG  K+A AL  AG + FFV + EE
Sbjct: 6   LTIDLDAIAANWRALDQMTASDCQTGAVVKADSYGLGAAKVAHALARAGARRFFVATCEE 65

Query: 68  GVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G  +R        I V  G   G   +I D +L P+++S+ Q    ++        P+ L
Sbjct: 66  GADVRRALGSGPQICVFSGHMEGDTALIRDFDLTPMLNSIDQ---LTRHFEALGGQPFGL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G NRLGL   E       +         L++SHLAC+DDP   +NS QL  FR + 
Sbjct: 123 QLDSGMNRLGLEPGEWEAVAGFALEAG---PELLMSHLACSDDPDHPMNSEQLGAFRAMT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
               G+  SL+++ GILLGP +HF+LTRPGI LYGG          + VV     +I +R
Sbjct: 180 DG-TGVPRSLSATGGILLGPAWHFELTRPGIGLYGGRPFEEA----RPVVRLSLPVIQVR 234

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   GE V Y         S IA  A GYADG P TLS   + ++  V            
Sbjct: 235 EVEIGEPVGYSNTWTAEHTSTIATVAAGYADGLPRTLSSRATLYAGRVP----------- 283

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P++G+++MD+   D++    +     + I GP    DD+A  +GT  Y++L  +G RY 
Sbjct: 284 CPLVGRVSMDLITVDVSHLPEVPE--TLDILGPHQTPDDLADTAGTIGYEILTSLGRRYQ 341

Query: 367 KFY 369
           + Y
Sbjct: 342 RRY 344


>gi|260888171|ref|ZP_05899434.1| alanine racemase [Selenomonas sputigena ATCC 35185]
 gi|260862200|gb|EEX76700.1| alanine racemase [Selenomonas sputigena ATCC 35185]
          Length = 385

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 101/381 (26%), Positives = 164/381 (43%), Gaps = 25/381 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           S   +  +I+L A+++N+  +  AL G A+  AVVK NAYG G   +A     AG     
Sbjct: 15  SKRAVWAEINLGAIRHNYRVIGEALCGGAKLCAVVKANAYGHGALAVAKEAVAAGAAYLA 74

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120
           V ++ E  +LR       + VL  I P +       ++   ++++       ++ ++   
Sbjct: 75  VATLSEAAELRRAGIGTPLLVLGLIDPLEAAEAVSLDVTQTVANLALAKAISAEALAQEK 134

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +    L +DTG  R+G + +EA     +       +L    SH A AD         QL 
Sbjct: 135 TAKLHLAIDTGMGRIGCTSEEASALARDIAVLPNIELEGAFSHFAMADVRDKAHARGQLA 194

Query: 181 RFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK------INKS 229
            F       +  G+      +A S+ IL  P  H  + R GI  YG          + ++
Sbjct: 195 LFLRATEAIEEAGVHLKLRHIAESAAILQMPEAHLDMVRAGIIQYGMYPSEEVARDVRET 254

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            P++  +  +AR++ ++    G  + YG      R S IA   +GYADGY   LSG    
Sbjct: 255 SPLRPAMALKARVLFVKDVPEGFAIGYGCTWHAKRRSRIATLPLGYADGYIRALSG---- 310

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVAL 348
                       I G   P++G+I MD  M D+TD   +  G  + +FG   +  D+VA 
Sbjct: 311 -------KAHVEILGKTAPVVGRICMDQCMIDVTDIERVAEGTEVTLFGSATLSADNVAA 363

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY++   I +R  + Y
Sbjct: 364 WLGTINYEIPCLIASRVRRVY 384


>gi|322506310|gb|ADX01764.1| dadX [Acinetobacter baumannii 1656-2]
          Length = 367

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 147/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R       I +L G+  P          L   I S  Q+ +  +         
Sbjct: 61  LEEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q  +       N         ++H + AD           Q+  
Sbjct: 120 VFLKMNSGMNRLGFKPQNYVQAWERLNNLANVSKITHMTHFSDADADRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  ++    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEEIVRDLPG-ERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++     E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIIAVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+++MDM   D+T   S +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTARV 361


>gi|307609535|emb|CBW99033.1| hypothetical protein LPW_08181 [Legionella pneumophila 130b]
          Length = 357

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 99/368 (26%), Positives = 176/368 (47%), Gaps = 21/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   RL I+ +AL +N   +  L+   +  A+VK NAYG G  ++AP L +  ++ F V 
Sbjct: 2   SRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + +R    +    +  G+    E  +  + +   ++    QL +  K        
Sbjct: 61  CLEEALAIRALGVETSCILFQGVFSSDELSVAVENDFACILHHAQQLEWLIK-TPLPYPI 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++V+TG +RLG  + E             + +   +++HLACAD+P    N  Q+  
Sbjct: 120 KIWVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKNIGLMTHLACADEPHRPENQQQISL 179

Query: 182 FRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVT 237
           F+ +     G    S+A+S+ I+  P+ H  + RPGI LYG +   N++        V+ 
Sbjct: 180 FQEI--SIPGFRQRSIANSAAIISFPDSHADVVRPGIMLYGVSPFANQNARDLSLIPVMR 237

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I  I    +   V YGG  K  + S I + A GY DGYP  +S             
Sbjct: 238 FMSAISAIHDNPSFAQVGYGGTWKSDKPSRIGIVAAGYGDGYPRHIS-----------EK 286

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              +++G  V I+G+++MDM   D+T+   +E+GD ++++G  + ++ +A ++GT  Y+L
Sbjct: 287 TPVWVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGTVGYEL 346

Query: 358 LVRIGTRY 365
           L +I  R 
Sbjct: 347 LCQISERV 354


>gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
 gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
          Length = 825

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 153/371 (41%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   A +    +   ++K + YG G  +IA  L +  V    V   +E
Sbjct: 466 LEVNLNAVVANLNYYRAFMKPETKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD +L P + S   L    K          P  
Sbjct: 526 GVTLRKNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLDALIKAAEKEGVTGFPVH 584

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFR 183
           +++DTG +R+G   + +  +      ++       + SH     DD     ++ Q E F 
Sbjct: 585 IKLDTGMHRMGFDPENDMEELIGKLKHQNAIIPRSVFSHFVGSDDDSFDDFSAHQFELFD 644

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R G+ LYG   + NK+     V T 
Sbjct: 645 KGSKQLQAAFDHKILRHICNSAGIEHFPERQLDMCRLGLGLYGINSRNNKTINC--VSTL 702

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +    AG+ V Y  +  L RDS+IA   IGYADG    L               
Sbjct: 703 KTTILQMHNVKAGDSVGYSRKTILDRDSVIAAIPIGYADGLNRRLGNRH----------A 752

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+TD    + GD ++IFG  + +  ++    T  Y++L
Sbjct: 753 YCLVNGQKAEYVGNICMDVAMIDVTDIP-CKEGDSVEIFGEHLPVQTLSDILETIPYEVL 811

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 812 TTISNRVKRVY 822


>gi|314969163|gb|EFT13261.1| alanine racemase [Propionibacterium acnes HL037PA1]
          Length = 375

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 148/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V  V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVAPVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|239630389|ref|ZP_04673420.1| alanine racemase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526672|gb|EEQ65673.1| alanine racemase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 378

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 153/379 (40%), Gaps = 30/379 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              ++ ID TA+ +N  H +  L    +  AVVK +AYG G  ++A     AG   F V 
Sbjct: 7   RPAKVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E + LR       + VL  +      I     +   +SS   L     ++      P
Sbjct: 67  ILDEALGLRKADYSEPVLVLGIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELP 126

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                L +DTG  R+G +  +AL         + K   +  I +H A AD P       Q
Sbjct: 127 PLRIHLALDTGMGRIGFTEDQALKTAVAFVEAHSKQFVIEGIFTHFATADAPDDTYFKQQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232
           +++F  L+           +++S+  L     +  + R G+++YG     +       P+
Sbjct: 187 VDKFNHLVDLLPSRPRYVHVSNSATSLWHAVCNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +   ++  AG+ +SYG   +   D  I    IGYADG+   L G       
Sbjct: 247 EPALSLESELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G    I+G+I MD  M  +  +     G  + + G     +I L DVA 
Sbjct: 301 ------HVLVDGQYCEIVGRICMDQFMIRLPKAYPA--GTKVVLVGQSGDQEITLLDVAK 352

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T +Y++   +  R  +
Sbjct: 353 YSKTIHYEIACNLTPRLKR 371


>gi|126461891|ref|YP_001043005.1| alanine racemase [Rhodobacter sphaeroides ATCC 17029]
 gi|221638874|ref|YP_002525136.1| Alanine racemase [Rhodobacter sphaeroides KD131]
 gi|226711057|sp|A3PIR7|ALR_RHOS1 RecName: Full=Alanine racemase
 gi|254802372|sp|B9KQC8|ALR_RHOSK RecName: Full=Alanine racemase
 gi|126103555|gb|ABN76233.1| alanine racemase [Rhodobacter sphaeroides ATCC 17029]
 gi|221159655|gb|ACM00635.1| Alanine racemase [Rhodobacter sphaeroides KD131]
          Length = 349

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 187/363 (51%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  NW +++ + + + +T AVVK ++YGLG  K+A AL  AG + FFV + EE
Sbjct: 6   LTIDLDAIAANWRALDQMTASDCQTGAVVKADSYGLGAAKVAHALARAGARRFFVATCEE 65

Query: 68  GVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G  +R        I V  G   G   +I D +L P+++S+ Q    ++        P+ L
Sbjct: 66  GADVRRALGSGPQICVFSGHMEGDTALIRDFDLTPMLNSIDQ---LTRHFEALGGQPFGL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G NRLGL   E       +         L++SHLAC+DDP   +N+ QL  FR + 
Sbjct: 123 QLDSGMNRLGLEPGEWEAVAGFALEAG---PELLMSHLACSDDPDHPMNAEQLGAFRAMT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
               G+  SL+++ GILLGP +HF+LTRPGI LYGG          + VV     +I +R
Sbjct: 180 DG-TGVPRSLSATGGILLGPAWHFELTRPGIGLYGGRPFEEA----RPVVRLSLPVIQVR 234

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   GE V Y         S IA  A GYADG P TLS   + ++  V            
Sbjct: 235 EVEIGEPVGYSNTWTAEHTSTIATVAAGYADGLPRTLSSRATLYAGRVP----------- 283

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P++G+++MD+   D++    +     + I GP    DD+A  +GT  Y++L  +G RY 
Sbjct: 284 CPLVGRVSMDLITVDVSHLPEVPE--TLDILGPHQTPDDLADTAGTIGYEILTSLGRRYQ 341

Query: 367 KFY 369
           + Y
Sbjct: 342 RRY 344


>gi|261856961|ref|YP_003264244.1| alanine racemase [Halothiobacillus neapolitanus c2]
 gi|261837430|gb|ACX97197.1| alanine racemase [Halothiobacillus neapolitanus c2]
          Length = 367

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 158/370 (42%), Gaps = 25/370 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  L   I L A ++N+    A  G  R  AVVK +AYG G  + A A+ +     F V 
Sbjct: 2   SRPLVAHIRLDAFRHNYRLAKAAHGG-RALAVVKADAYGHGAVECARAIADE-ADGFAVA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + LR     A I +L G     E +     NL  V+    Q+             
Sbjct: 60  MIEEALSLRAAGITAPILLLEGFFDVSELLDIQIHNLWIVVHHRWQVDALLAA-HLTRPI 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G +R+G++  +         N       +++SH A AD+P S     QLE F
Sbjct: 119 TVWLKMDSGMHRVGIAPDQYRATYERLKNHPSIAQIVLMSHFARADEPESGHMLQQLETF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-----SHPMQTVVT 237
                       SL++S+ +L          RPGI LYG    + K     +  ++ V+ 
Sbjct: 179 HAATMGI-DAPVSLSNSAAVLGWSGARADWARPGIMLYGADPFVGKAGASIAEQLRPVMR 237

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E  II +R    GE + YGG     R + + V + GYADGYP            +   G
Sbjct: 238 LEGGIISVRIIARGEPLGYGGAFVADRPTRVGVVSCGYADGYPR-----------TAPTG 286

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G +  ++G+++MDM   D+T     ++G  ++++G  + ++ VA   GT  Y+L
Sbjct: 287 TPVAVDGQLTRLIGRVSMDMLTVDLTHLPQADIGSRVELWGDQVPVNAVASRVGTIAYEL 346

Query: 358 LVRIGTRYAK 367
           L        +
Sbjct: 347 LC----HVKR 352


>gi|139439475|ref|ZP_01772907.1| Hypothetical protein COLAER_01932 [Collinsella aerofaciens ATCC
           25986]
 gi|133775028|gb|EBA38848.1| Hypothetical protein COLAER_01932 [Collinsella aerofaciens ATCC
           25986]
          Length = 381

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 165/385 (42%), Gaps = 30/385 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            +  ++ID  AL+ N  +   L +   R   VVK +AYG G  + A  +Y+AG   F V 
Sbjct: 8   RWSWVEIDRGALRRNTRAYKNLLNPRQRLCCVVKADAYGHGAVECAKIMYSAGADMFAVA 67

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           +V EGV+LR       I +L          + + +++P + +      Y +  ++ G   
Sbjct: 68  TVNEGVELRQGGITKPILILSEPPIEAIPTLLEFDIMPSVYTSDFALAYGECAVAAGKVG 127

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            Y L ++TG NR+G+   + LDF       +  Q   + +H A AD+PS     +Q +RF
Sbjct: 128 KYHLAIETGMNRIGVHYTQVLDFVRGINFHRGIQCDGVFTHFATADEPSGWDYKLQCQRF 187

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TV 235
              +   K           A++   +L P+ HF + R G+ LYG          MQ   V
Sbjct: 188 TEAVQAIKDAGFECGIVHCANTPSSMLDPSMHFDMIRAGVGLYGMQPCELSGRVMQLDPV 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSV 294
           ++  AR+  +     GE V YG   ++ R  + I    IGYADG   TLS          
Sbjct: 248 MSVHARVTRVAHPAMGEGVGYGFTYRVPRTRVQICTLPIGYADGLSRTLSNRMD------ 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDI-----TDSLSIEVGDYIQIFGPD----IKLDD 345
                   +G  V  +G I MD  M  I      +    E GD I I G D    I +D+
Sbjct: 302 -----VLYRGERVHQVGNICMDQFMVAIQSNPAHEIPEAEYGDEIIIVGRDGDAEITMDE 356

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +A   GT NY++    G R  K Y 
Sbjct: 357 MARLRGTINYEVACGFGMRLDKVYV 381


>gi|299769496|ref|YP_003731522.1| alanine racemase [Acinetobacter sp. DR1]
 gi|298699584|gb|ADI90149.1| alanine racemase [Acinetobacter sp. DR1]
          Length = 356

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 23/363 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL+ N + +  L+ N++  ++VK N YG G +    AL  +    F V  ++EG++
Sbjct: 8   IDRNALQYNLNRVKQLAANSKIVSMVKANGYGHGIKDCLAALNAS--DAFGVACLQEGLE 65

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHPYALQ 127
           +R    Q  + ++ G+    E  I  +     VI    Q  +  K             ++
Sbjct: 66  IRELGFQQSVTLIEGVFSEDEMPIAIEQKFECVIHHQQQFEWLIKYKQKYIAQGLKVWVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG  + E ++       K  G   ++  H A A D    +N  Q ++F  +  
Sbjct: 126 LNSGMNRLGFKVTEIIEVIKTL--KAEGFTCVLAMHFANA-DVDHPLNEQQKQQFLQVKQ 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
             + + AS  +S+ I   P  HF   RPGI LYG +   +K      ++ V+T  A +I 
Sbjct: 183 ACEPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFSAEVIA 242

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +      E V YG      +   IA+ +IGY DGYP                     I  
Sbjct: 243 LNHIQTNEHVGYGSTFCAKQAMDIAIVSIGYGDGYPRA-----------YIKQNYVAIDK 291

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +  ++G+++MDM   D+T  + +++G  ++++G    +DDVA A+GT  Y+LL R+  R
Sbjct: 292 QLCAVVGRVSMDMLAIDVTG-MQVKLGTPVELWGAHRLVDDVADANGTIGYELLCRLSNR 350

Query: 365 YAK 367
             +
Sbjct: 351 PTR 353


>gi|329894372|ref|ZP_08270242.1| Alanine racemase [gamma proteobacterium IMCC3088]
 gi|328923168|gb|EGG30491.1| Alanine racemase [gamma proteobacterium IMCC3088]
          Length = 354

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 108/358 (30%), Positives = 171/358 (47%), Gaps = 19/358 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ AL+ N   +      ++   VVK +AYG   + IAPAL N     F V    EG++
Sbjct: 9   IDIEALRANALWLKQHCLGSKLMCVVKADAYGHDLKLIAPALSNI-ADGFAVAHCTEGLE 67

Query: 71  LRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR   P A I VL G     E    +  +L   +++  Q+  Y             ++VD
Sbjct: 68  LRAINPTAPILVLEGTFDAAELNAAYQHDLTVALTNTWQVRDYLA-RPLDQRPTVWVKVD 126

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           TG +RLGLS  E      +    +L Q +++ +H + A D  +   ++QL R   L   +
Sbjct: 127 TGMHRLGLSETELNALCRD---NRLPQDTVLFTHFSDA-DTDAEKTALQLARLTRLGERH 182

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249
           K +  S A+S   L+ PN H    RPG SLYGG+   +    ++ V++   RI  IR   
Sbjct: 183 K-LMMSAANSPACLMHPNTHLDWVRPGYSLYGGSPLAHIEDNLRPVMSVYTRIHSIRSLP 241

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
            GE V YG      R S IA   IGYADGYP ++             G K ++     P+
Sbjct: 242 VGECVGYGSTWCAERASKIATLPIGYADGYPRSI-----------KSGTKVWLHNQFAPV 290

Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           +G+++MD+   D+TD  + + GD ++++G  + L  +A  +  + Y+++ RI  R  +
Sbjct: 291 VGRVSMDLLTIDVTDIPAAKAGDLVEVWGQHMTLHALANHNELSGYEIMARIPKRLPR 348


>gi|298207069|ref|YP_003715248.1| alanine racemase [Croceibacter atlanticus HTCC2559]
 gi|83849703|gb|EAP87571.1| alanine racemase [Croceibacter atlanticus HTCC2559]
          Length = 368

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 162/379 (42%), Gaps = 21/379 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M   +   L+I+L+AL +N++ + +    + +  AVVK   YG     +A  L   G   
Sbjct: 1   MPKAQETVLEINLSALGHNYNYLKSKVNTSVKLMAVVKAFGYGSDSVMVAKELQTLGADY 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-- 117
           F V    EGV+LR       I VL+ +     K + +  L P I S+  L  +       
Sbjct: 61  FAVAYTSEGVRLRDENITTPILVLHPLANA-FKELIERCLEPSIYSLKTLREFIATAQTL 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNS 176
               +P  L+ ++G NRLG + ++  +      N    +++ ++SHL  ++D + +    
Sbjct: 120 KQKEYPIHLKFNSGLNRLGFNEKDVPEMYSLLKNTTAVKVTSLMSHLVASEDHNLTDFTH 179

Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q+  F +    +K           +++SGIL  P  HF + R GI LYG  +   +   
Sbjct: 180 NQISSFVSFTEDFKTEFGYMPMRHQSNTSGILNFPEAHFDMVRSGIGLYGYGNSSTEDLA 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ + T ++ I  +     G  V Y       R ++ A   +G+ADG             
Sbjct: 240 LKPIATLKSVISQLHNIPKGSSVGYNRGFIADRTTVSATIPLGHADGIGRQYG------- 292

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G   + G   PILG + MDMTM D+T     + GD + IFG      + A  + 
Sbjct: 293 ---KGKGCFIVNGKKAPILGNVCMDMTMVDVTGI-ECQEGDEVIIFGAYQNASEFAKGAQ 348

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T +Y++L  +  R  + + 
Sbjct: 349 TISYEILTSVSQRVKRTFC 367


>gi|282880769|ref|ZP_06289465.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
 gi|281305303|gb|EFA97367.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
          Length = 824

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 152/371 (40%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   +L     +   ++K +AYG G  ++A  L +  V    V   +E
Sbjct: 465 LEVNLNAIVDNLNYYRSLLKHGTKLVCMIKADAYGAGAVEVAKTLQDHRVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     A I V+        K++FD +L P + S   L    K         +P  
Sbjct: 525 GVTLRKNGITANIMVMNPEM-SSFKMLFDYDLEPEVYSFRLLDALVKAAEKEGITDYPVH 583

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFR 183
           +++DTG +RLG   Q +          +       + SH      D     ++ Q   F 
Sbjct: 584 IKLDTGMHRLGFDPQKDMQTLISRLKRQNAIIPRSVFSHFVGSDSDDFDSFSAQQFALFD 643

Query: 184 T-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                   +    I   + +S+GI   P     + R G+ LYG   + N    +  V T 
Sbjct: 644 EGSKLLQAAFTHKIIRHMDNSAGIEHFPERQLDMCRLGLGLYGINPRTN--QVIHQVSTL 701

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              I+  R+  AG+ V Y  +  +  DS+IA   IGYADG    L              G
Sbjct: 702 RTTILQKREVKAGDTVGYSRKGTIAHDSVIAAIPIGYADGLNRRLGNRH----------G 751

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G   P +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 752 YCLVNGQRAPYVGNICMDVAMIDVTGI-DCKEGDRVEIFGEHLPVTVLSDILETIPYEVL 810

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 811 TSVSNRVKRVY 821


>gi|301067541|ref|YP_003789564.1| alanine racemase [Lactobacillus casei str. Zhang]
 gi|300439948|gb|ADK19714.1| Alanine racemase [Lactobacillus casei str. Zhang]
          Length = 378

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 153/379 (40%), Gaps = 30/379 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              ++ ID TA+ +N  H +  L    +  AVVK +AYG G  ++A     AG   F V 
Sbjct: 7   RPAKVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E + LR       + VL  +      I     +   +SS   L     ++      P
Sbjct: 67  ILDEALGLRKADYSEPVLVLGIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELP 126

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                L +DTG  R+G +  +AL         + K   +  I +H A AD P       Q
Sbjct: 127 PLRIHLALDTGMGRIGFTEDQALKTAVAFVEAHSKQFVIEGIFTHFATADAPDDTYFKQQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232
           +++F  L+           +++S+  L     +  + R G+++YG     +       P+
Sbjct: 187 VDKFNHLVDLLPSRPRYVHVSNSATSLWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +   ++  AG+ +SYG   +   D  I    IGYADG+   L G       
Sbjct: 247 EPALSLESELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G    I+G+I MD  M  +  +     G  + + G     +I L DVA 
Sbjct: 301 ------HVLVDGQYCEIVGRICMDQFMIRLPKAYPA--GTKVVLVGQSGDQEITLLDVAK 352

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T +Y++   +  R  +
Sbjct: 353 YSKTIHYEIACNLTPRLKR 371


>gi|239503097|ref|ZP_04662407.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii
           AB900]
          Length = 367

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 146/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R       I +L GI  P          L   I S  Q+ +  K         
Sbjct: 61  LDEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVEKH-PYSAQFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q  +       N         + H + AD           Q+  
Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  ++    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEEIVKDLPG-ERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++     E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+++MDM   D+T   S +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTARV 361


>gi|305680044|ref|ZP_07402854.1| alanine racemase [Corynebacterium matruchotii ATCC 14266]
 gi|305660664|gb|EFM50161.1| alanine racemase [Corynebacterium matruchotii ATCC 14266]
          Length = 378

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 85/383 (22%), Positives = 155/383 (40%), Gaps = 25/383 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M     L   IDL A+  N   +  L   A+   VVK + Y  G   +A  +   G    
Sbjct: 1   MVVVNLLETVIDLDAIATNTRILKNLVQPAQLMCVVKADGYNHGAIPVARTVLANGADQL 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V ++ E ++LR     A I               D N+   + S+       K  +   
Sbjct: 61  GVATLAEALELREAGITAPILCWIWSPEQDFAAALDANIHLAVVSMAHAQAIVKYAAGKP 120

Query: 121 SHPY--ALQVDTGFNRLGLSLQEALDFTHNSFNK----KLGQLSLIISHLACADDPSSHV 174
                  +++DTG +R G+   +         +        +++ ++SHLACAD+P +  
Sbjct: 121 EKLVQTTIKIDTGLHRSGVDESQWEAVFTLLKDAGTATGNIEVTGVMSHLACADEPGNPA 180

Query: 175 NSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINK 228
           N  Q   F   I+  + +        L++S  +L  P+++ ++ RPG+++YG +      
Sbjct: 181 NDTQAAAFNRAIALGRKLGLELPVNHLSNSPAVLTRPDFYHEMVRPGLAVYGYSPLADGN 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
            + +Q  ++   ++ +++    GE  SY    +  +   +AV   GYADG P        
Sbjct: 241 DYGLQPAMSWVGKVTVVKPIEPGEGTSYNLTWRAAKPGYLAVIPAGYADGLPRRAQNHV- 299

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDV 346
                     +  I G+  P +G+I MD  + D+ D+  ++  GD   IFGP  +   ++
Sbjct: 300 ----------EVTIGGHRYPQVGRICMDQFVIDLGDNPHNVRPGDEAIIFGPGGMSATEL 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A      NY ++     R  + Y
Sbjct: 350 ASRIQDINYAVICAPTGRTVRRY 372


>gi|254509706|ref|ZP_05121773.1| alanine racemase [Rhodobacteraceae bacterium KLH11]
 gi|221533417|gb|EEE36405.1| alanine racemase [Rhodobacteraceae bacterium KLH11]
          Length = 405

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 190/372 (51%), Gaps = 27/372 (7%)

Query: 1   MHS-NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+S      L I+L AL  NW +++A + N  T AVVK +AYGLG E +A AL   GV+ 
Sbjct: 58  MNSIMSTAHLTINLHALAQNWQALDAGT-NVETGAVVKADAYGLGAEPVAWALAEEGVRK 116

Query: 60  FFVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           FFV + EEG  +R    P   + V  G   G   ++ + +L P+I+S  Q   + + +  
Sbjct: 117 FFVAAAEEGATVREAVGPGPMVAVFSGHMEGDADLLRNHDLTPLINSPEQ---FKRHLQA 173

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                + +Q+DTG NRLGL   +  +  H++         +++SHLAC+D+P   +N  Q
Sbjct: 174 LPDRKFGIQLDTGMNRLGLEPSDWAELRHDALKLDPL---VVMSHLACSDEPEHPMNKQQ 230

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           L+ F+ +    + +  SLA++ G LLG  YHF   RPGI LYGG          + VVT 
Sbjct: 231 LQTFKQMTDGVE-VPRSLAATGGTLLGSEYHFDFCRPGIGLYGGMPFAGA----KPVVTV 285

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  II +R    GE V YG   K  R S IA  A GYADG    + G           G 
Sbjct: 286 DLPIIQVRDVAVGETVGYGNAWKARRPSKIATVAAGYADGLHRAIGG-----------GI 334

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             F      P++G+I+MD+   D+TD         ++I      +DD+A A+GT  Y++L
Sbjct: 335 DAFAGDQPCPVVGRISMDLITVDVTDLPYTPE--RLRILNGHQTVDDLAEAAGTIGYEIL 392

Query: 359 VRIGTRYAKFYT 370
             +G+RY++ Y 
Sbjct: 393 TSLGSRYSRGYV 404


>gi|313765106|gb|EFS36470.1| alanine racemase [Propionibacterium acnes HL013PA1]
          Length = 375

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 148/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + + L  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTPLPISDVPEGAEFTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|225010284|ref|ZP_03700756.1| alanine racemase [Flavobacteria bacterium MS024-3C]
 gi|225005763|gb|EEG43713.1| alanine racemase [Flavobacteria bacterium MS024-3C]
          Length = 363

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 108/367 (29%), Positives = 160/367 (43%), Gaps = 19/367 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL +N+  M   +S       VVK N YG     IA  L + GV    V    E
Sbjct: 6   LEIDLAALAHNYRYMRSKISAETMLLGVVKANGYGSESIAIAQKLTDLGVNYLGVAYTHE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           GV LRL   +  I VL+   P +   I +  L P I S+  L  + ++      +P  L+
Sbjct: 66  GVALRLAGIKTPILVLHP-QPEEFHDIVNHCLEPSIYSIRTLEAFIQVAPLNSHYPIHLK 124

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRTLI 186
           ++TG NRLGLS             +   ++  ++SHLA  DD        +Q++RF+  +
Sbjct: 125 LNTGLNRLGLSTGTLERVCKTLLCQSNVKVKAVLSHLAATDDLKERAFTELQIQRFKDGV 184

Query: 187 SHY-KGIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           +   K I       L +SSGI+  P   F + R GI+LYG  +       ++ V T   +
Sbjct: 185 AFIEKHIGPVAIKHLINSSGIINFPEAAFNMVRSGIALYGYGNNPKIDALLKPVATLTTK 244

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I  I     G+ V Y       +   +A   IG+ADG                   G  F
Sbjct: 245 ISQIHSIEKGDWVGYNKGFVANKKMRVATLTIGHADGISRVYG----------QGKGVVF 294

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G   PI+G + MDM M D+ + +    GD + IFG     +  A  + T +Y+LL  I
Sbjct: 295 VGGKPCPIIGNVCMDMLMIDLENQI-ANEGDSVVIFGKGASAETFAGGAKTISYELLTGI 353

Query: 362 GTRYAKF 368
           G R  + 
Sbjct: 354 GARVKRV 360


>gi|302670570|ref|YP_003830530.1| alanine racemase Alr [Butyrivibrio proteoclasticus B316]
 gi|302395043|gb|ADL33948.1| alanine racemase Alr [Butyrivibrio proteoclasticus B316]
          Length = 387

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 102/393 (25%), Positives = 167/393 (42%), Gaps = 38/393 (9%)

Query: 5   EFLRL--KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDF 60
           E+ R+  +ID+ A+K N  SM   +    R  AVVK +AYG G  +IA +L N   +  +
Sbjct: 4   EYSRVYARIDIDAIKYNLESMRKNIPDGTRIMAVVKTDAYGHGATRIALSLENVDYIWGY 63

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLM 116
            V + EE  +LR       I VL    P   + +    + P +  +      S    +L+
Sbjct: 64  AVATAEEAFELRDAGAIKPILVLGYTFPYAYRRMLLEGVRPSVFRMDMAQELSDCGQELV 123

Query: 117 SCGVSHP---YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
             G         + VDTG +R+G++  E   DF     N    Q+  I +H A AD+   
Sbjct: 124 DSGELTELPCVHIAVDTGMSRIGVTPDEKGADFVSKVMNMPGIQVEGIFTHFARADEADL 183

Query: 173 HVNSVQLERFRTLISHY-----KGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
                + + F   +        K I     A+S+ I+  P     + R G+++YG     
Sbjct: 184 SNAREREKVFADFVKSVEETTGKKIPLHHCANSASIISVPESSMDMVRAGVTMYGMWPSE 243

Query: 227 NKSHPM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           +    +   +  +   + I++I++  AG  VSYGG     + + IA   +GY DGYP +L
Sbjct: 244 DVPRDIVSLKPTMELISHIVMIKEVPAGTPVSYGGTYVTDKPTKIATIPVGYGDGYPRSL 303

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF------ 337
           S             G   I G+   I+G++ MD  M D+TD   +  GD + +       
Sbjct: 304 SN-----------KGYVLINGHHANIIGRVCMDQFMVDVTDIHYVLEGDEVVLLGRDKNT 352

Query: 338 GPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           G +I  + +   SG  NY+L      R  + + 
Sbjct: 353 GEEISAELLGEMSGRFNYELTCDFNKRIPRVFV 385


>gi|218674907|ref|ZP_03524576.1| alanine racemase protein [Rhizobium etli GR56]
          Length = 338

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/347 (34%), Positives = 180/347 (51%), Gaps = 15/347 (4%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR-LYTPQARIFVLYGI 86
              R  AVVK +AYGLG E++A  LY+ G + FFV    E V+LR      A+IFVL G+
Sbjct: 3   APVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEAVRLRPALAESAQIFVLNGL 62

Query: 87  HPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
            PG E    ++ ++PV++S+ Q   +S          P  LQ DTG +RLG   +E  + 
Sbjct: 63  QPGNEVACAESGIVPVLNSLAQWRQWSATARRLKRCLPAVLQFDTGMSRLGFPWEERAEL 122

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG 205
                +    ++  I+SHLACADD  S  N  Q      +   + G + S A+S G+ LG
Sbjct: 123 AAALRDGANVEILFIMSHLACADDLESSQNGEQFAEMARIADEFPGFDISFANSGGVFLG 182

Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
             YH  L RPGI+LYGG      ++PM+ VV  +  ++  R   +G  + YGG      +
Sbjct: 183 DAYHGVLARPGIALYGGAPSAGGTNPMEPVVRLDVAVVQTRTVPSGAKIGYGGTHVTRSE 242

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
           + +A  A GYADG P +L              G  + KG  +PI+G+++MD    DIT  
Sbjct: 243 TRLATIAAGYADGLPRSLGDC-----------GAVYHKGIRLPIVGRVSMDSATVDITAL 291

Query: 326 LS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
               + +G  +++ GP+  L+DVA  +GT +Y++L  +G RY + Y 
Sbjct: 292 PEGALSLGSLVEVLGPNQTLEDVAGDAGTISYEILTGLGDRYDRHYC 338


>gi|313792676|gb|EFS40762.1| alanine racemase [Propionibacterium acnes HL110PA1]
          Length = 375

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 144/375 (38%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL A+  N       +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLRAIAANLAVARKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185
            VD+G  R+GL  +     T  +   +  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPEHLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEEFTRHEIDAFMTA 189

Query: 186 I-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +              LA+S  IL        + R GI  YG     + +   +   ++  
Sbjct: 190 VTQTQTDRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTINPGDAIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G + PI+G+I MD  M D+    S+ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIGGSVHPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  + + 
Sbjct: 359 EITCAISKRVDRRWV 373


>gi|225076292|ref|ZP_03719491.1| hypothetical protein NEIFLAOT_01333 [Neisseria flavescens
           NRL30031/H210]
 gi|224952416|gb|EEG33625.1| hypothetical protein NEIFLAOT_01333 [Neisseria flavescens
           NRL30031/H210]
          Length = 352

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 95/358 (26%), Positives = 159/358 (44%), Gaps = 17/358 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L+ N+  +  L GN +  AV+K +AYG G  + A AL +     F V +
Sbjct: 2   RPLNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHALADI-ADGFAVAT 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           V+EGV+LR    +  I +L G+    E    D  +L P I S  QL  +           
Sbjct: 60  VDEGVELRQNGIKNPIVLLEGVFDAAEYADVDRYDLWPAIGSQWQLEAFVHH-EWQRPTT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G                +  +  +  SH ACAD+P + +  +QLE F 
Sbjct: 119 VWLKMDSGMHRAGFFPHNYAAAYTALKQSESVENIVKFSHFACADEPENGMTEMQLEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
                 +G E SLA+S+ IL  P       R G++LYG +        ++ V+   +R+ 
Sbjct: 179 LACEGLEG-EESLANSAAILNVPEARRNWGRAGLALYGISPFGGVDERLKPVMRLTSRVF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R       + YG     ++ + + + A GYADGYP   S                 + 
Sbjct: 238 GERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAVD 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G    I+G+++MDM   ++  S    +G  ++++G  I +++V+  +    Y++L  I
Sbjct: 287 GKRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVSEVASMIPYEILCNI 343


>gi|291279508|ref|YP_003496343.1| alanine racemase [Deferribacter desulfuricans SSM1]
 gi|290754210|dbj|BAI80587.1| alanine racemase [Deferribacter desulfuricans SSM1]
          Length = 363

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 167/369 (45%), Gaps = 21/369 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVT 63
                +I+L   K+N     +LS  ++  A+VK +AYG G  K++   Y    V+DF V 
Sbjct: 9   RPTYAEINLANYKHNIEVAKSLS-KSKIIAIVKADAYGHGAIKLSKFAYEQCDVKDFGVA 67

Query: 64  SVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
           ++EEGV LR   P  ARI  L  I     + +    + P +     +    K      V 
Sbjct: 68  TIEEGVNLRNVLPTDARIITLGYIDEHHFEELLHHKITPTVFDKSIMAKLDKFAKGNNVV 127

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L++DTG NRLG  L    DF     +     + L+++HL+ + D        Q+ R
Sbjct: 128 LDVVLKIDTGMNRLGFGLN--TDFNELVESYSNLNIVLMMTHLSSS-DTDLDYTKWQINR 184

Query: 182 FRTLISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           F   +  Y    E S+ +SS I    N  +  TRPGI  YG     N+   ++ V++  +
Sbjct: 185 FDEYLKRYNVKAETSVFNSSAICFYSN-KYTYTRPGIMSYGYVYPENR-FGLKPVMSIYS 242

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I I++   GE +SY      ++D  I V  IGYADGY   LS             G  
Sbjct: 243 KLIHIKRLKKGEKISYNQTFTASKDMKIGVIPIGYADGYFRALSN-----------KGVM 291

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           F+ G    ++G + MDMTM DIT     ++   +++ G  I  + +A    T +Y+++  
Sbjct: 292 FVNGKPCNVVGTVCMDMTMIDITHLNESDLDCEVEVLGKHIDAEQIAKMCNTISYEIVCA 351

Query: 361 IGTRYAKFY 369
           I  R  + Y
Sbjct: 352 ISDRIPRVY 360


>gi|302334971|ref|YP_003800178.1| alanine racemase [Olsenella uli DSM 7084]
 gi|301318811|gb|ADK67298.1| alanine racemase [Olsenella uli DSM 7084]
          Length = 386

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 96/390 (24%), Positives = 166/390 (42%), Gaps = 33/390 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            N +  +++DL A++ N  +  AL     +    VK +AYG G  + A A+ ++G   F 
Sbjct: 8   KNRWAWVEVDLNAIRKNTRAFKALLEPRTQMMCAVKADAYGHGAVECAKAMASSGASQFA 67

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGV 120
           V +V+EGV+LR       I +L          +   +++P +  S   L +  + +S G 
Sbjct: 68  VATVDEGVELRRGGVAQPILMLNECPLEGIDDLLAFDVMPSVYTSGFALAYGERAVSLGK 127

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              Y L +DTG +R+G+  ++ ++F       +  + +   +H A AD         Q  
Sbjct: 128 VGRYHLAIDTGMSRIGVLPEDVVEFRRMIDFHRGLECAGSFTHFATADAIGDWDFRQQSL 187

Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQ 233
           RF   +S  +G           ++ G +L P  HF + R GI LYG            ++
Sbjct: 188 RFSDAVSALEGAGLEVGLVHCDNTPGTVLHPENHFDMCRVGIGLYGLQPSETTAPRIALE 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSP 292
             ++  AR+  +     GE V YG   ++ +    IA   +GYADG   +LS        
Sbjct: 248 PAMSVRARVTRVVNPAVGEGVGYGFTYRVPKPNIQIATVPVGYADGLSRSLSN------- 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTM--FDITDSL------SIEVGDYIQIFGPD---- 340
                    ++G     +G+I MD  M   D+ D        ++E GD + + G D    
Sbjct: 301 ----NMDVLVRGMRARQVGRICMDQFMFAVDVNDIRAYHPATAVERGDVVTLIGRDGDDE 356

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           I  D++A    T NY+++     R  + +T
Sbjct: 357 ISADEMADRRDTINYEVVCNFSQRLDRIFT 386


>gi|295094258|emb|CBK83349.1| alanine racemase [Coprococcus sp. ART55/1]
          Length = 377

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 158/383 (41%), Gaps = 25/383 (6%)

Query: 1   MHSNEFL-R--LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M++  F  R    IDL  L++N  ++   L       AV+K + Y  G   + P L   G
Sbjct: 1   MNNRPFAGRTAAVIDLAKLRSNIANIKSRLKPGVEFIAVMKGDGYRHGIAGLYPTLKECG 60

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKL 115
           +  + V   EEG  LR       I +L              +L   + S+       +  
Sbjct: 61  IDSYAVAIWEEGKMLRDAGATESILILGDTADDMLDEAAKYDLDLTVFSMEGAENMAAAA 120

Query: 116 MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
              G      ++++TG NR+G  + QE+ D            ++ I +H A AD+     
Sbjct: 121 RRAGKKQNVQIKLNTGMNRIGFPVCQESFDTIKKICEMDDLNVTGIFTHFARADEGDHTS 180

Query: 175 NSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              QL+ +   ++  + +     +  +A+S  IL+ P       R G  LYG T   +  
Sbjct: 181 ARKQLDLYLHAVNELEKMGVVIPKHHVANSPAILMLPEAQLDAVRCGDILYGLTPSDDFD 240

Query: 230 H---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                +Q +++    + ++++   G  + YGG     R + IA   +G+ADGY   LS  
Sbjct: 241 WKNSGLQEILSWYTYVAMVKEVPTGSEIGYGGTFVTERPTKIATLPVGFADGYSRYLSN- 299

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                      GK  I G+  PI+G++ MD  M D+TD   ++ GD + + G  + ++D+
Sbjct: 300 ----------KGKVIINGHEAPIIGRVCMDQCMADVTDIPDVQRGDTVTLLGEGMSIEDM 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A    T    ++  I  R  + Y
Sbjct: 350 ANMLDTNVDVIVCNISVRVPRVY 372


>gi|288573304|ref|ZP_06391661.1| alanine racemase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569045|gb|EFC90602.1| alanine racemase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 371

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 153/380 (40%), Gaps = 26/380 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              R+++ L  L  N+ S+        +  +V+K +AYG G  ++A  L + G Q F V 
Sbjct: 4   RPSRMEVSLDNLAFNYRSIKNHVGPEVQLMSVIKADAYGHGVMEVARRLSSEGCQRFAVA 63

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
           + +E   LR       + V+          +   N+   ++ +      SK     G   
Sbjct: 64  TSDEAFALRDGGVGEALLVMGPTSYASAGELVRRNVSVALTDMDMARALSKAAESEGTPA 123

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+VD+G  R+G   +E         +     +  + +H A AD+        Q  R+
Sbjct: 124 YVHLKVDSGMGRIGFLPEEVPAILDELISLPGVVVEGLFTHFATADERRLDYTESQYRRY 183

Query: 183 RTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTV 235
             +++    KG+      + +S+G L  P  H    RPG+ LYG     +   P+  +  
Sbjct: 184 LDVLAMLEDKGVRIPVRHVCNSAGTLNSPEKHLDACRPGVILYGMWPSGDCIRPIELKPT 243

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
              +  I +IR       V YG +     D  IAV  IGYADG     S           
Sbjct: 244 FEVKTSIAMIRNLPPRSGVGYGLRYMTRGDERIAVLPIGYADGLSRAFSMRI-------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS- 350
              +  +KG  VP +G I MD TM D+T  L + VGD + I G      I  D++A A  
Sbjct: 296 ---QMLVKGTRVPQVGNICMDQTMIDVTG-LDVSVGDEVVIVGSQGDETITPDELAGARH 351

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
            T NY++ +    R  + Y 
Sbjct: 352 NTINYEIPIMFSKRVPRVYV 371


>gi|194337539|ref|YP_002019333.1| alanine racemase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310016|gb|ACF44716.1| alanine racemase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 365

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 98/377 (25%), Positives = 157/377 (41%), Gaps = 26/377 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                + L  L  N   +    G  AR   +VK NAYG    ++A  L  +GV+DF V +
Sbjct: 1   MTEALVSLDNLAWNTSLIRKRVGGSARIMGIVKANAYGHNVHRVAETLEKSGVRDFGVAN 60

Query: 65  VEEGVKLRLYT-PQAR--IFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGV 120
           + E ++L+     +    I       P         ++   +  S+   +      +   
Sbjct: 61  IHEAIELKTGGALKKPANILAFSSPLPSHIPFFLHHDIEMTLCDSLTLQSAEEIAAAENK 120

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +    L+VDTG  RLG     A++      +    +L  I +H A +        + QL+
Sbjct: 121 TIAVQLKVDTGMGRLGTPPAVAMELLRQIDHSPHLELKGIYTHFADSSTAEG--TTKQLD 178

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233
            F+TL + Y+      +    A+S  IL  P     + RPGI LYG     N      ++
Sbjct: 179 AFKTLTAEYEHASSKTVCKHAANSGAILSAPESWLDMVRPGILLYGYHPTKNSPCRLDVR 238

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  EA++I ++K  AG  +SY           IA  A GYADGY   LSG  +     
Sbjct: 239 PVMQFEAKVIFVKKVPAGTTISYNRTWTANEPRSIATIAAGYADGYTRALSGRAT----- 293

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGT 352
                   I G   P +G +TMD  M D+     ++ GD   +FG + I  D +A  +GT
Sbjct: 294 ------VMINGNTYPQVGIVTMDQIMVDLGTRHDVKTGDTATLFGWEGIGADSLAGLAGT 347

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y++L  +  R  + +
Sbjct: 348 ISYEMLCSVSARVKRIF 364


>gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 825

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 150/371 (40%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   A+   N +   ++K + YG G  +IA  L +       V   +E
Sbjct: 466 LEVNLNAMIDNLNYYRAMMHPNTKLVCMIKADGYGAGAVEIAKTLQDHRADYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR     + I ++        K +FD +L P + S   L    K          P  
Sbjct: 526 GATLRRNGISSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGFPVH 584

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183
           +++DTG +RLG   + +         N+       + SH   AD D   + +  Q E F 
Sbjct: 585 IKLDTGMHRLGFDPEKDVPRLIERLHNQNALIPKSVFSHFVGADADQFDNFSQRQFECFD 644

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R G+ LYG   + N       V T 
Sbjct: 645 KGSKMLQAAFEHHILRHIDNSAGIEHFPQRQLDMCRLGLGLYGINPRNNAIINN--VSTL 702

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              I+ + K  AGE V Y  +  +  DS+IA   IGYADG    L              G
Sbjct: 703 RTTILQLHKVKAGETVGYSRRGTIEHDSVIAAIPIGYADGLNRRLGNR----------NG 752

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              +       +G I MD+ M D+T       GD ++IFG ++ +  ++ A  T  Y++L
Sbjct: 753 HCLVNNQRAEYVGNICMDVAMIDVTGI-DCNEGDSVEIFGDNLPVTVLSDALQTIPYEVL 811

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 812 TGISNRVNRVY 822


>gi|254563262|ref|YP_003070357.1| alanine racemase [Methylobacterium extorquens DM4]
 gi|254270540|emb|CAX26543.1| putative alanine racemase (alr-like) [Methylobacterium extorquens
           DM4]
          Length = 342

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 121/353 (34%), Positives = 184/353 (52%), Gaps = 14/353 (3%)

Query: 18  NNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ 77
            NW ++ A +  A   AVVK +AYG G   +APAL+ AG + FFV  + EG+  R   P+
Sbjct: 3   ANWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKILPE 62

Query: 78  ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137
           A ++VL G+ PG  +      L PV+    +L  +++ M      P AL VDTG NRLGL
Sbjct: 63  AALYVLNGLPPGHAEAFRAHRLRPVLGDAQELAEWAEAMQGA--GPAALHVDTGMNRLGL 120

Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           S+ EAL    +    + G + L++SHL  A+ P   +N+ Q   F  + + +  + ASLA
Sbjct: 121 SVAEALALAGDPVIARAG-IDLVMSHLVSAELPDDPLNTRQAADFARVRAAFPQMRASLA 179

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
           +SSG  L  +    L RPG +L+GG     + +PM+ VV  EA I+ +R   AG    Y 
Sbjct: 180 NSSGTCLANDARHDLLRPGYALFGGNPDPGQPNPMRPVVRLEATILQVRDVEAGATCGYN 239

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
            + +      +A  ++GYADGYP + S             G   + G   PI+G I+MD+
Sbjct: 240 ARWQAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGVPCPIVGLISMDL 288

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            + D+TD+     G    + G  + +D V  A+GT  Y++L  +G+RY + Y 
Sbjct: 289 IILDVTDATQARRGGTATLIGDALDIDTVGQAAGTIGYEILTSLGSRYVRDYV 341


>gi|327457519|gb|EGF04174.1| alanine racemase [Propionibacterium acnes HL092PA1]
          Length = 375

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 145/375 (38%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLRAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERFRTL 185
            VD+G  R+GL  +     T  +   +  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPEHLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEESTRHEIDAFMTA 189

Query: 186 I-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +              LA+S  IL        + R GI  YG     + +   +   ++  
Sbjct: 190 VTQTQTDRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTINPGDAIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G + PI+G+I MD  M D+    S+ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIGGSVHPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  + + 
Sbjct: 359 EITCAISKRVDRRWV 373


>gi|27468592|ref|NP_765229.1| alanine racemase [Staphylococcus epidermidis ATCC 12228]
 gi|57867600|ref|YP_189248.1| alanine racemase [Staphylococcus epidermidis RP62A]
 gi|293366041|ref|ZP_06612729.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38372172|sp|Q8CNK7|ALR_STAES RecName: Full=Alanine racemase
 gi|81673927|sp|Q5HME5|ALR_STAEQ RecName: Full=Alanine racemase
 gi|27316139|gb|AAO05273.1|AE016749_219 alanine racemase [Staphylococcus epidermidis ATCC 12228]
 gi|57638258|gb|AAW55046.1| alanine racemase [Staphylococcus epidermidis RP62A]
 gi|291319764|gb|EFE60122.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734113|gb|EGG70431.1| alanine racemase [Staphylococcus epidermidis VCU045]
          Length = 382

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 30/382 (7%)

Query: 3   SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R     ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 2   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSC 118
           F V +++E ++LR++   A++ VL  +     +      +   + S         ++   
Sbjct: 62  FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 121

Query: 119 GVSHPY-ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              + +  +++DTG  R+G+  + E  +       +       + +H A AD+P S +N 
Sbjct: 122 NQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKRDHLVFEGVFTHFASADEPGSSMNE 181

Query: 177 VQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
            Q   F+ +++   K I     +S+G LL         R GISLYG         N    
Sbjct: 182 -QYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      +  + ++    GE VSYG       +  IA+  IGYADGY  ++ G      
Sbjct: 241 LRPSAQLVSETVQVKTLKVGETVSYGRTFIADEEMTIAILPIGYADGYLRSMQG------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                     + G    ++G+I MD  +  +     ++ G+ + +    +      + VA
Sbjct: 295 ------AFVNVNGSQCEVIGRICMDQMIVKVPSH--VKTGEKVILMDNHVDSPQSAEAVA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++L  +  R  + Y
Sbjct: 347 NKQGTINYEVLCNLSRRLPRIY 368


>gi|159904188|ref|YP_001551532.1| alanine racemase [Prochlorococcus marinus str. MIT 9211]
 gi|159889364|gb|ABX09578.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9211]
          Length = 381

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 106/381 (27%), Positives = 170/381 (44%), Gaps = 28/381 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +++   A++ N  ++   L       AVVK + YG G + +A +    G Q   V 
Sbjct: 10  QRAWVEVKPAAIEANTRNIKQRLPKQCMLMAVVKADGYGHGAQTVAKSALEGGAQSLGVA 69

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGV-S 121
           +++EG+ LR    ++ I +L  +   ++       NL+P IS   +     K+    V +
Sbjct: 70  TLQEGIDLRQAGIKSPILLLGNLTNEEDLDACLSWNLMPTISDYREAVICHKIAEERVQT 129

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP----SSHVNSV 177
               ++VDTG  RLG  L +A    +   + +   L  + SHLA AD         V   
Sbjct: 130 FAVHVKVDTGMTRLGCELSDAPSLLNFIDDLRFLDLEGVYSHLALADGDFDGEGGRVTFH 189

Query: 178 QLERFRTLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231
           Q ++F  L+       K I   LA+S+G L     ++ + R GI+LYG +    +     
Sbjct: 190 QKQKFDNLLKSISLKNKSIVRHLANSAGTLRDCGLYYDMVRVGIALYGYSPIESLKNDFS 249

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +  +ARI LIR+  AG  VSYG        S +AV  IGYADG    LSG  S   
Sbjct: 250 LEPALAVKARITLIREVPAGTGVSYGHTFITKEQSRLAVVGIGYADGVGRALSGKIS--- 306

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     I G + P +G ITMD  + DIT +L I VG+ + + G D    +     +
Sbjct: 307 --------VLINGKLFPQVGAITMDQLVIDITGNLDISVGNVVTLLGFDQGRSLSPYYWS 358

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
             SG+  +++L     R  + 
Sbjct: 359 DISGSIPWEILCGFKYRLPRV 379


>gi|317495370|ref|ZP_07953739.1| alanine racemase [Gemella moribillum M424]
 gi|316914429|gb|EFV35906.1| alanine racemase [Gemella moribillum M424]
          Length = 375

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 101/382 (26%), Positives = 172/382 (45%), Gaps = 27/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M ++    L+++L A+ NN+  ++ L+G   + AVVK ++YGLG + IA  LY  GV+ F
Sbjct: 1   MINDRPTHLRVNLDAVLNNYRKLDKLNGLKTSLAVVKADSYGLGAKVIADYLYKNGVRHF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCG 119
            V ++EE ++L+ Y  ++ + VL   +P   K   + N+     S         +L    
Sbjct: 61  AVATLEEALELKKYIKESLLLVLGVTNPKNVKYAVENNISLTCPSKEWFEEALKELEKID 120

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 ++++TG NR+G S  E L   HN F  +  +   I SH + AD   +  +  Q 
Sbjct: 121 GKLKLHIKLETGMNRIGTSEVEELMEIHNLFYSEKVEFEGIFSHYSNADGEDNEYDDYQT 180

Query: 180 ERFRTLIS--HYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINKSHPMQ-- 233
             F +L+     K     + +S+G +   + +    L+R GI+LYG     N     +  
Sbjct: 181 ANFNSLVKLFKLKPKYIHIENSAGTIKYSDRNDICNLSRIGIALYGCYPSSNIERLNKLS 240

Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
              V +  +++  ++K   G  + YG   +   D  IA   IGYADG      G      
Sbjct: 241 LEPVASLVSKVTHVKKVPKGTKIGYGISYETQEDEYIATIPIGYADGLLRRAQGFKLN-- 298

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                     + G    I+G++ MD  M   ++  +I+VGD + +FG      I +DD A
Sbjct: 299 ----------VAGEECEIVGRVCMDQLMVRCSE--NIKVGDDVLVFGEYNNQKISVDDFA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++   I  R  + Y
Sbjct: 347 DYQKTISYEIFCCINRRVPRKY 368


>gi|329726098|gb|EGG62570.1| alanine racemase [Staphylococcus epidermidis VCU144]
          Length = 382

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 30/382 (7%)

Query: 3   SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R     ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 2   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSC 118
           F V +++E ++LR++   A++ VL  +     +      +   + S         ++   
Sbjct: 62  FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 121

Query: 119 GVSHPY-ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              + +  +++DTG  R+G+  + E  +       +       + +H A AD+P S +N 
Sbjct: 122 NQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKRDHLVFEGVFTHFASADEPGSSMNE 181

Query: 177 VQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
            Q   F+ +++   K I     +S+G LL         R GISLYG         N    
Sbjct: 182 -QYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      +  + ++    GE VSYG       +  IA+  IGYADGY  ++ G      
Sbjct: 241 LRPSAQLVSETVQVKTLKVGETVSYGRTFIADEEMTIAILPIGYADGYLRSMQG------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                     + G    ++G+I MD  +  +     ++ G+ + +    +      + VA
Sbjct: 295 ------AFVNVNGSQCEVIGRICMDQMIVKVPSH--VKTGEKVILMDNHVDSTQSAEAVA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++L  +  R  + Y
Sbjct: 347 NKQGTINYEVLCNLSRRLPRIY 368


>gi|308183092|ref|YP_003927219.1| alanine racemase [Helicobacter pylori PeCan4]
 gi|308065277|gb|ADO07169.1| alanine racemase [Helicobacter pylori PeCan4]
          Length = 377

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 172/381 (45%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNR------ 301

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 302 -----TQVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|116495991|ref|YP_807725.1| alanine racemase [Lactobacillus casei ATCC 334]
 gi|122262609|sp|Q034T9|ALR_LACC3 RecName: Full=Alanine racemase
 gi|116106141|gb|ABJ71283.1| alanine racemase [Lactobacillus casei ATCC 334]
          Length = 378

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 153/379 (40%), Gaps = 30/379 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               + ID TA+ +N  H +  L    +  AVVK +AYG G  ++A     AG   F V 
Sbjct: 7   RPATVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E + LR       + VL  +      I     +   +SS   L     ++      P
Sbjct: 67  ILDEALGLRKADYSEPVLVLGIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELP 126

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                L +DTG  R+G +  +AL         + K   +  + +H A AD P       Q
Sbjct: 127 PLRIHLALDTGMGRIGFTEDQALKTAVAFVEAHPKQFVIEGVFTHFATADAPDDTYFKQQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232
           +++F  L++          +++S+  L     +  + R G+++YG     +       P+
Sbjct: 187 VDKFNHLVNLLPSRPRYVHVSNSATSLWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ ++ +   ++  AG+ +SYG   +   D  I    IGYADG+   L G       
Sbjct: 247 EPALSLKSELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G    I+G+I MD  M  +  +     G  + + G     +I L DVA 
Sbjct: 301 ------HVLVDGQYCEIVGRICMDQFMIRLPKAYPA--GTKVVLVGQSGDQEITLLDVAK 352

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T +Y++   +  R  +
Sbjct: 353 YSKTIHYEIACNLTPRLKR 371


>gi|313123077|ref|YP_004033336.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279640|gb|ADQ60359.1| Alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 376

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 148/382 (38%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    L I+L A+K N       L    +   VVK NAYG G  ++AP +  AG   F V
Sbjct: 6   NRPAALHINLAAIKENTRQAKDHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++EG++LR       I VL      +  +    ++   +SS+  L    K L   G+ 
Sbjct: 66  AMLDEGLELRRAQIVKPILVLGLQPAEEAALAAVNDISLPVSSLDWLKKAEKVLRKEGLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G S  E     +          +  + +H A AD   +     Q++
Sbjct: 126 LKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------INKSHP 231
           RF+ + S    K     + +++ IL   +    + R GI LYG           +  +  
Sbjct: 186 RFKHMESMLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                  K  +     PI+G++ MD  M  +     +  G  +++   D      L   A
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNSLRRAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++  +   R  + Y
Sbjct: 352 DWLDTIHYEVACQFNDRLDRIY 373


>gi|330840033|ref|YP_004414613.1| Alanine racemase [Selenomonas sputigena ATCC 35185]
 gi|329747797|gb|AEC01154.1| Alanine racemase [Selenomonas sputigena ATCC 35185]
          Length = 372

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 101/381 (26%), Positives = 164/381 (43%), Gaps = 25/381 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           S   +  +I+L A+++N+  +  AL G A+  AVVK NAYG G   +A     AG     
Sbjct: 2   SKRAVWAEINLGAIRHNYRVIGEALCGGAKLCAVVKANAYGHGALAVAKEAVAAGAAYLA 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120
           V ++ E  +LR       + VL  I P +       ++   ++++       ++ ++   
Sbjct: 62  VATLSEAAELRRAGIGTPLLVLGLIDPLEAAEAVSLDVTQTVANLALAKAISAEALAQEK 121

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +    L +DTG  R+G + +EA     +       +L    SH A AD         QL 
Sbjct: 122 TAKLHLAIDTGMGRIGCTSEEASALARDIAVLPNIELEGAFSHFAMADVRDKAHARGQLA 181

Query: 181 RFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK------INKS 229
            F       +  G+      +A S+ IL  P  H  + R GI  YG          + ++
Sbjct: 182 LFLRATEAIEEAGVHLKLRHIAESAAILQMPEAHLDMVRAGIIQYGMYPSEEVARDVRET 241

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            P++  +  +AR++ ++    G  + YG      R S IA   +GYADGY   LSG    
Sbjct: 242 SPLRPAMALKARVLFVKDVPEGFAIGYGCTWHAKRRSRIATLPLGYADGYIRALSG---- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVAL 348
                       I G   P++G+I MD  M D+TD   +  G  + +FG   +  D+VA 
Sbjct: 298 -------KAHVEILGKTAPVVGRICMDQCMIDVTDIERVAEGTEVTLFGSATLSADNVAA 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
             GT NY++   I +R  + Y
Sbjct: 351 WLGTINYEIPCLIASRVRRVY 371


>gi|312199983|ref|YP_004020044.1| alanine racemase [Frankia sp. EuI1c]
 gi|311231319|gb|ADP84174.1| alanine racemase [Frankia sp. EuI1c]
          Length = 388

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 103/379 (27%), Positives = 160/379 (42%), Gaps = 35/379 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A++ +   + A +G+A T AVVK + YG G    A A  +AG     V  +EE + 
Sbjct: 22  IDLDAVRASTAELVARAGSAATMAVVKADGYGHGMLPCARAALDAGATWLGVAVIEEALA 81

Query: 71  LRLYTPQARIF--VLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLMSCGVSHPYAL 126
           LR       +   ++    P    I    +L     S P       +   S G      L
Sbjct: 82  LRAAGITVPVMSWLMSPGEPLDAAIGAQIDLSA---SAPWALAEIAAAARSTGRPARVHL 138

Query: 127 QVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG  R G +  +     D       + +  +  + SH A AD P       Q+ RF 
Sbjct: 139 KADTGLGRAGATDADWPGLCDAAAALRAEGVLDVVGVWSHFAFADAPGHPTVQGQIGRFT 198

Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234
             +     +  +     LA+S+  L+ P  HF L RPGIS+YG +   +        ++ 
Sbjct: 199 DAVEIAEKAGLRPEVRHLANSAATLVSPEAHFDLVRPGISIYGLSPGPDVGRSAELGLRP 258

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   AR+ L ++   G  VSY  +     ++ +A+  +GYADG P   + L        
Sbjct: 259 AMRLAARVALAKRVPPGTGVSYAHRYVTDSETTLALVPLGYADGVPRAATNL-------- 310

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G+  + G    I G + MD  + D+ D   +  GD   +FGP    +   DD A A 
Sbjct: 311 ---GEVLLAGRRRRIAGTVCMDQFVLDVGDD-QVAEGDEAVLFGPGDAGEPTADDWAAAL 366

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++ RIG R  + Y
Sbjct: 367 GTINYEIVTRIGPRVPRIY 385


>gi|89068949|ref|ZP_01156331.1| alanine racemase [Oceanicola granulosus HTCC2516]
 gi|89045530|gb|EAR51594.1| alanine racemase [Oceanicola granulosus HTCC2516]
          Length = 345

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 132/362 (36%), Positives = 190/362 (52%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW +++A+ G+A T AVVK + YGLG   +A  L+ AG + FFV   EEG
Sbjct: 6   LTIDLDALAANWRALDAM-GSAETGAVVKADGYGLGVAPVARTLHKAGARRFFVAVAEEG 64

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR    P   + V  G  PG  ++I D  L+P+++S+ Q+  + + +     HP+ +Q
Sbjct: 65  AALRQALGPNVDVCVFGGHMPGDSEMIGDLGLVPMLNSLEQVLRHFEAL---PGHPFGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+ + E       +  +K     L++SHLACAD+P   +N+ QL  F  +  
Sbjct: 122 LDTGMNRLGMEMSEWAAVAEIALQQK---PVLVMSHLACADEPDHEMNTRQLAEFHRMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             K +  SLA++ GILLG  Y F LTRPGI LYGG          + VVT E  +I +R 
Sbjct: 179 GIK-VPRSLAATGGILLGQEYQFDLTRPGIGLYGGRPFEEA----RPVVTLELPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R + +A  A GYADG    LS   S            +      
Sbjct: 234 VEPGESVGYGNSWIAERRTRLATVAAGYADGITRHLSNRASL-----------WHGDAPC 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI G+++MD+   DITD    E  D + +      +DD+A  +GT  Y++L ++G RY +
Sbjct: 283 PIRGRVSMDLICADITDLP--ETPDSLALLNGRQGVDDIADIAGTIGYEVLTQLGPRYTR 340

Query: 368 FY 369
            +
Sbjct: 341 RH 342


>gi|300857828|ref|YP_003782811.1| alanine racemase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685282|gb|ADK28204.1| Alanine racemase [Corynebacterium pseudotuberculosis FRC41]
 gi|302330118|gb|ADL20312.1| Alanine racemase [Corynebacterium pseudotuberculosis 1002]
          Length = 370

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 22/375 (5%)

Query: 6   FLRLKIDLTALKNNWHSMN--ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            L  +IDL A+ +N   +   A +  A+   VVK + Y  G  ++A  +   G   F V 
Sbjct: 3   LLEARIDLAAIAHNTRLIKDKAAAQGAQLMCVVKADGYNHGAVEVATVMEENGADQFGVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++ E + LR    ++ I                  +     S+  +    +        P
Sbjct: 63  TIGEALALREGGIESSILSWIWSPEQDLGAAITAEIDLAAISLEHVKALVRASESYGKKP 122

Query: 124 Y--ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++VDTG +R G+  Q+  +      + +  Q++ + SH + AD+  S     Q   
Sbjct: 123 VRVTVKVDTGLHRSGVDKQDWRESFCMLRDAENIQVTGVFSHFSSADESDSTETEQQERA 182

Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F   I   + +        +A+S   L  P+ +F + RPG++LYG      +SH ++  +
Sbjct: 183 FLNAIELGRSLGLELPVNHIANSPATLNRPDLYFDMVRPGLALYGHEPIPGESHGLREAM 242

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   R+ +++    GE  SYG   +  +D  + V  +GYADG P +  G           
Sbjct: 243 SWVGRVTVVKPIARGEGTSYGLTWRAEQDGYLCVVPVGYADGLPRSAQGHL--------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTN 354
             +  I G   P +G++ MD  +  + ++   +  GD   I GP  +   ++A A GT N
Sbjct: 294 --EITIGGRRYPQVGRVCMDQIVVALGENPYGVAQGDEAVILGPTGMTATELATAMGTIN 351

Query: 355 YDLLVRIGTRYAKFY 369
           Y+L+ R   R  + +
Sbjct: 352 YELVCRPCGRTVRVF 366


>gi|317178709|dbj|BAJ56497.1| alanine racemase, biosynthetic [Helicobacter pylori F30]
          Length = 377

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 172/381 (45%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSTVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNPNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEIEGIFTHLSNADSNIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|242241483|ref|ZP_04795928.1| alanine racemase [Staphylococcus epidermidis W23144]
 gi|242235026|gb|EES37337.1| alanine racemase [Staphylococcus epidermidis W23144]
          Length = 384

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 161/382 (42%), Gaps = 30/382 (7%)

Query: 3   SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R     ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 4   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 63

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117
           F V +++E ++LR++   A++ VL  +     +      +   + S   L    K +   
Sbjct: 64  FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 123

Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    +++DTG  R+G+  + E  +       +       + +H A AD+P S +N 
Sbjct: 124 NQKNLWLHVKLDTGMGRIGMKDIYEYKEVVDLINKRNHLVFEGVYTHFASADEPGSSMNE 183

Query: 177 VQLERFRTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
            Q   F+ +++   K I     +S+G LL         R GISLYG         N    
Sbjct: 184 -QYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 242

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      +  + ++   AGE VSYG       +  IA+  IGYADGY  ++ G      
Sbjct: 243 LRPSAQLVSETVQVKTLKAGETVSYGRTYTAAEEMTIAILPIGYADGYLRSMQG------ 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                     + G    ++G+I MD  +  +     ++ G+ + +    +      + VA
Sbjct: 297 ------AFVNVNGNQCEVIGRICMDQMIVKVPSH--VKTGEKVILMDNHVDSPQSAEAVA 348

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++L  +  R  + Y
Sbjct: 349 NKQGTINYEVLCNLSRRLPRIY 370


>gi|325267108|ref|ZP_08133777.1| alanine racemase [Kingella denitrificans ATCC 33394]
 gi|324981461|gb|EGC17104.1| alanine racemase [Kingella denitrificans ATCC 33394]
          Length = 356

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 159/370 (42%), Gaps = 22/370 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L++N+  +  + G     AVVK +AYG G  + A AL +     F V  
Sbjct: 2   RPLVAEIRLAHLRHNYRVLKEMHGQ-NLLAVVKADAYGHGAVQCAKALDDM-ADGFAVAF 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE V LR    ++ I +L G+  P +  ++    L  VI    QL              
Sbjct: 60  LEEAVTLRENGIKSPILLLEGVFEPHEYALVEQYGLWTVIHQQTQLEDCLAH-DWKQPAT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G          H           + ++H ACADD    +  +Q++ F 
Sbjct: 119 VWLKMDSGMHRAGFFPHNYAAAYHALQQSPKIGKIVKMTHFACADDAERGMTEMQIDTFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAE 239
           T      G ++SLA+S+ IL  P    +  R G++LYG +     +       + V+   
Sbjct: 179 TACEGLGG-DSSLANSAAILAYPEARREWGRAGLALYGVSPFAAGAGCFEADLKPVMRVA 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++   R     E + YG      R + + + A GYADGYP            +      
Sbjct: 238 SQVFAERVLQPHEPIGYGASFYTKRSTRVGLVACGYADGYPR-----------NAPTDTP 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            FI G    ++G+ +MDM   D++   +      +++FG  + ++++A ++G   Y++L 
Sbjct: 287 VFINGMRSRLIGRASMDMLTVDLSHVPADSA-YEVELFGDSVSINELAQSAGHIPYEILC 345

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 346 HI-KRMRRVY 354


>gi|332875573|ref|ZP_08443386.1| alanine racemase [Acinetobacter baumannii 6014059]
 gi|193076000|gb|ABO10585.2| alanine racemase 2 PLP-binding, catabolic [Acinetobacter baumannii
           ATCC 17978]
 gi|332736276|gb|EGJ67290.1| alanine racemase [Acinetobacter baumannii 6014059]
          Length = 367

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 146/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R       I +L GI  P          L   I S  Q+ +  +         
Sbjct: 61  LDEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q  +       N         + H + AD           Q+  
Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  ++    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEEIVKDLPG-ERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++     E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+++MDM   D+T   S +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTARV 361


>gi|187736333|ref|YP_001878445.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426385|gb|ACD05664.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835]
          Length = 367

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 154/372 (41%), Gaps = 17/372 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                +ID  AL++N + +  +  + R  A+VK  AYG G E +  AL       F V +
Sbjct: 7   PRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCAFFGVAT 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123
           V E  ++R    +   F+L     G+ + I        +SS+ +   ++ L +  G +  
Sbjct: 67  VAEACRVRDAGAKTCPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGALYGKTVH 126

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L VDTG  R G    E    T          L  + SHL+ A D        Q+  F 
Sbjct: 127 VHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDLEGVFSHLSAASD-DISFTHGQISGFT 185

Query: 184 TLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTA 238
             ++            L SS+ +         + R G  LYG +   +  +  ++  +T 
Sbjct: 186 EAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELRPTMTL 245

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +RI LIR       VSY         + +A   IGYADGY   LS            G 
Sbjct: 246 YSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQ----------GA 295

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           + +I G   P+LG++TMD  M D+T    +E GD ++I GP++  +++   + T   ++L
Sbjct: 296 RVYINGQYCPVLGRVTMDQIMVDVTYMDHVETGDLVEIMGPNVSWEELTRRANTIPSNVL 355

Query: 359 VRIGTRYAKFYT 370
             I  R  + Y 
Sbjct: 356 TSISARVPRIYV 367


>gi|255306640|ref|ZP_05350811.1| serine/alanine racemase [Clostridium difficile ATCC 43255]
          Length = 712

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 173/380 (45%), Gaps = 31/380 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +     ++IDL  L++N   +  A+  +    AVVK NAYG    ++A      GV+ F 
Sbjct: 342 NTNRAWIEIDLNNLEHNVKMIQKAMPEDCELMAVVKANAYGHSAFEVATCANQIGVKAFA 401

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V +++EG+ LR Y     I +L   +P + K +   NL   +  +        L     +
Sbjct: 402 VATIDEGIDLRRYGILGEILILGYTNPIRAKELHKYNLTQSVIDL---NHAISLNKQKYN 458

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQ 178
               +++DTG +RLG  + +       +F  K   +  I +HL  +D   D      + Q
Sbjct: 459 IKSHIKIDTGMHRLGFDVNDVRSILK-AFKLKYLDICGIFTHLCVSDSLKDEDVDFTNKQ 517

Query: 179 LERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230
           +E F  LI     KGI+     + SS G    PN      R GI+LYG     N +    
Sbjct: 518 IECFYKLIDFLLKKGIKIPKVHIQSSYGFFNYPNLKCNYVRIGIALYGILSSPNDTTKLQ 577

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ ++++ILIRK    +   YG     +RDS+IA+ +IGYADG P  LS     
Sbjct: 578 LDLRPVLSLKSQVILIRKIQKDDSFGYGRVFIASRDSVIAILSIGYADGIPRNLS----- 632

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       I G    I+G+I MD    DITD  ++EVG+   I G D    +   +
Sbjct: 633 -----CGKSYVIINGCRAAIVGRICMDQLAVDITDIPNVEVGNTAIIIGRDNLSELSASE 687

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA  S + + +LL R+G R 
Sbjct: 688 VANNSCSISNELLSRVGRRL 707


>gi|126699232|ref|YP_001088129.1| serine/alanine racemase [Clostridium difficile 630]
 gi|254975261|ref|ZP_05271733.1| serine/alanine racemase [Clostridium difficile QCD-66c26]
 gi|255092651|ref|ZP_05322129.1| serine/alanine racemase [Clostridium difficile CIP 107932]
 gi|255314388|ref|ZP_05355971.1| serine/alanine racemase [Clostridium difficile QCD-76w55]
 gi|255517066|ref|ZP_05384742.1| serine/alanine racemase [Clostridium difficile QCD-97b34]
 gi|255650170|ref|ZP_05397072.1| serine/alanine racemase [Clostridium difficile QCD-37x79]
 gi|260683293|ref|YP_003214578.1| serine/alanine racemase [Clostridium difficile CD196]
 gi|260686889|ref|YP_003218022.1| serine/alanine racemase [Clostridium difficile R20291]
 gi|115250669|emb|CAJ68493.1| Alanine racemase 1 [Clostridium difficile]
 gi|260209456|emb|CBA62968.1| serine/alanine racemase [Clostridium difficile CD196]
 gi|260212905|emb|CBE04150.1| serine/alanine racemase [Clostridium difficile R20291]
          Length = 712

 Score =  348 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 173/380 (45%), Gaps = 31/380 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +     ++IDL  L++N   +  A+  +    AVVK NAYG    ++A      GV+ F 
Sbjct: 342 NTNRAWIEIDLNNLEHNVKMIQKAMPEDCELMAVVKANAYGHSAFEVATCANQIGVKAFA 401

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V +++EG+ LR Y     I +L   +P + K +   NL   +  +        L     +
Sbjct: 402 VATIDEGIDLRRYGILGEILILGYTNPIRAKELHKYNLTQSVIDL---NHAISLNKQKYN 458

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQ 178
               +++DTG +RLG  + +       +F  K   +  I +HL  +D   D      + Q
Sbjct: 459 IKSHIKIDTGMHRLGFDVNDVRSILK-AFKLKYLDICGIFTHLCVSDSLKDEDVDFTNKQ 517

Query: 179 LERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230
           +E F  LI     KGI+     + SS G    PN      R GI+LYG     N +    
Sbjct: 518 IECFYKLIDFLLKKGIKIPKVHIQSSYGFFNYPNLKCNYVRIGIALYGILSSPNDTTKLQ 577

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ ++++ILIRK    +   YG     +RDS+IA+ +IGYADG P  LS     
Sbjct: 578 LDLRPVLSLKSQVILIRKIQKDDSFGYGRVFIASRDSVIAILSIGYADGIPRNLS----- 632

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       I G    I+G+I MD    DITD  ++EVG+   I G D    +   +
Sbjct: 633 -----CGKSYVIINGCRAAIVGRICMDQLAVDITDIPNVEVGNTAIIIGRDNLSELSASE 687

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA  S + + +LL R+G R 
Sbjct: 688 VANNSCSISNELLSRVGRRL 707


>gi|116513509|ref|YP_812415.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275721|sp|Q04C45|ALR_LACDB RecName: Full=Alanine racemase
 gi|116092824|gb|ABJ57977.1| Alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 376

 Score =  348 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 87/382 (22%), Positives = 149/382 (39%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    L I+L A+K N     A L    +   VVK NAYG G  ++AP +  AG   F V
Sbjct: 6   NRPAALHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGAARLAPVMEEAGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++EG++LR       I VL      +  +    ++   +SS+  L    K L   G+ 
Sbjct: 66  AMLDEGLELRRAQIVKPILVLGLQPAEESALAAANDISLPVSSLDWLKKAEKVLRKEGLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G S  E     +          +  + +H A AD   +     Q++
Sbjct: 126 LKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------INKSHP 231
           RF+ + S    K     + +++ IL   +    + R GI LYG           +  +  
Sbjct: 186 RFKHMESLLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LEPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                  K  +     PI+G++ MD  M  +     +  G  +++   D      L   A
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNSLRRAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++  +   R  + Y
Sbjct: 352 DWLDTIHYEVACQFNDRLDRIY 373


>gi|329735688|gb|EGG71971.1| alanine racemase [Staphylococcus epidermidis VCU028]
          Length = 382

 Score =  348 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 160/382 (41%), Gaps = 30/382 (7%)

Query: 3   SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S +F R     ++L A+  N+ + N L  N    +V+K N YGLG  KIA  L   G   
Sbjct: 2   SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSC 118
           F V +++E ++LR++   A++ VL  +     +      +   + S         ++   
Sbjct: 62  FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 121

Query: 119 GVSHPY-ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              + +  +++DTG  R+G+  + E  +       +       + +H A AD+P + +N 
Sbjct: 122 NQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKRDHLVFEGVFTHFASADEPGNSMNE 181

Query: 177 VQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
            Q   F+ +++  +        +S+G LL         R GISLYG         N    
Sbjct: 182 -QYTLFKEMVNQVEKPNYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      +  + ++   AGE VSYG       +  IA+  IGYADGY  ++ G      
Sbjct: 241 LRPSAQLVSETVQVKTLKAGETVSYGRTYIADEEMTIAILPIGYADGYLRSMQG------ 294

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                     + G    ++G+I MD  +  +     ++ G+ + +    +      + VA
Sbjct: 295 ------AFVNVNGSQCEVIGRICMDQLIVKVPSH--VKTGEKVILMDNHVDSPQSAEAVA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
              GT NY++L  +  R  + Y
Sbjct: 347 NKQGTINYEVLCNLSRRLPRIY 368


>gi|228473937|ref|ZP_04058678.1| alanine racemase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274451|gb|EEK13292.1| alanine racemase [Capnocytophaga gingivalis ATCC 33624]
          Length = 367

 Score =  348 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 95/373 (25%), Positives = 153/373 (41%), Gaps = 26/373 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVE 66
           L+I L  L++N   +   L    R  AVVK N+YG     +A  L       +F V    
Sbjct: 6   LEIHLDNLQHNVRQLKKHLKEGTRFLAVVKANSYGNSSVAVAQYLEKKDLADEFAVAFTS 65

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SH 122
           EG++LR       I +    HP     + I   NL P + S   +T +           +
Sbjct: 66  EGIELRKAGVTRPILI---FHPQLVDFEDIVRYNLEPTLYSKRLITHFIDFAKEKQLNQY 122

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P+ L+ ++G NRLG S++E  +        +  ++    SHL  ++D         Q+  
Sbjct: 123 PFHLKCNSGMNRLGFSVEEIDEACELLKGHEELKVRTAFSHLLASEDLQARPFMEKQIAL 182

Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F+      +      I     ++SGIL  P  HF + R GI +YG  +        + + 
Sbjct: 183 FKAFQKKLENHFSHKIIYHNCNTSGILNYPEAHFDMVRSGIGMYGFANDPRLQKDFKPIT 242

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T ++ I  I     G+ V Y    +  +   IA  ++G+ADG                  
Sbjct: 243 TLKSIISQIHTIQKGDYVGYNFGFQAQKPMEIATISVGHADGLNRIYGKEV--------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
            G  FIK    PI+G + MDM M DIT  L  E G+ + IF      + +A  + T +Y+
Sbjct: 294 -GFVFIKDKKCPIVGNVCMDMIMVDITG-LGCEEGEEVVIFDERHTSETLAETAKTISYE 351

Query: 357 LLVRIGTRYAKFY 369
           L+  +  R  + +
Sbjct: 352 LITSLSRRIKRVF 364


>gi|295689700|ref|YP_003593393.1| alanine racemase [Caulobacter segnis ATCC 21756]
 gi|295431603|gb|ADG10775.1| alanine racemase [Caulobacter segnis ATCC 21756]
          Length = 360

 Score =  348 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 135/371 (36%), Positives = 189/371 (50%), Gaps = 14/371 (3%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M      RL IDL AL  N  ++ A +G+A  A  VK NAYGLG  ++A  L+  GV+ F
Sbjct: 1   MTDLHDARLTIDLDALAANHAALQARAGDAEVAPAVKANAYGLGAARVADRLWAEGVRSF 60

Query: 61  FVTSVEEGVKLRLYTPQ--ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           +V  + EGV LR       A I+VL G  PG    +    L PV++S+PQ+  ++     
Sbjct: 61  YVARLAEGVALRAALGDREAAIYVLDGATPGAGDALEGARLTPVLNSLPQIEAWNAQARA 120

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           G     AL +DTG NRLGL  +E       +   K   L L+ISHLACAD P   +N+ Q
Sbjct: 121 G-RLKAALHLDTGMNRLGLRPEELKVLLGATDRLKRLDLELVISHLACADVPDHPMNTRQ 179

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           LERF   ++       S A+S+G+ LG  Y F   RPGISLYGG  +      ++ V T 
Sbjct: 180 LERFSEAVAQLPNARKSFANSAGLFLGEAYRFDQARPGISLYGGGPEGRPHPEIRAVATV 239

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           EA I+ +R    GE V YG        + IA+   GYADG P                 G
Sbjct: 240 EAPILQVRVVPRGETVGYGATWTAPDTTRIAIVGAGYADGVPRA-----------SHPKG 288

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           + +  G    +LG+++MD+   D+TD  +   G  +++ G ++ +DD A A+GTT Y+LL
Sbjct: 289 QVWFDGARRQMLGRVSMDLMAVDVTDCDAARPGAMVELLGSNMPIDDAATAAGTTAYELL 348

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 349 TNIAPRARRIY 359


>gi|323516181|gb|ADX90562.1| alanine racemase [Acinetobacter baumannii TCDC-AB0715]
          Length = 367

 Score =  348 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 146/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R       I +L G+  P          L   I S  Q+ +  +         
Sbjct: 61  IEEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q  +       N         + H + AD           Q+  
Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  ++    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEEIVKDLPG-ERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++     E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+++MDM   D+T   S +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVILPIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTARV 361


>gi|325684688|gb|EGD26842.1| alanine racemase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 376

 Score =  348 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 148/382 (38%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    L I+L A+K N       L    +   VVK NAYG G  ++AP +  AG   F V
Sbjct: 6   NRPAALHINLAAIKENTRQAKDHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++EG++LR       I VL      +  +    ++   +SS+  L    K L   G+ 
Sbjct: 66  AMLDEGLELRRAQIVKPILVLGLQPAEEAALAAVNDISLPVSSLDWLKKAEKVLRKEGLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G S  E     +          +  + +H A AD   +     Q++
Sbjct: 126 LKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------INKSHP 231
           RF+ + S    K     + +++ IL   +    + R GI LYG           +  +  
Sbjct: 186 RFKHMESLLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                  K  +     PI+G++ MD  M  +     +  G  +++   D      L   A
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNSLRRAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++  +   R  + Y
Sbjct: 352 DWLDTIHYEVACQFNDRLDRIY 373


>gi|297625319|ref|YP_003687082.1| alanine racemase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921084|emb|CBL55625.1| Alanine racemase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 382

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 155/382 (40%), Gaps = 33/382 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVEE 67
           L+IDL AL++N  ++  L G+ +    VK + YG G   IA             V +V E
Sbjct: 7   LEIDLDALRHNARAIKQLVGDRKVLVAVKADGYGHGAVPIARLFQREHLADWLGVATVSE 66

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126
            + LR       I  L    P +     D ++   +         ++     G      L
Sbjct: 67  AMALREGGVTLPILKLSHAFPEELPTAIDADIALTVVDEQSADEAAEAAKVVGKPVNVHL 126

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            +DTG  R+G   + A+    +  ++    L  I +H+  +D          +L RF   
Sbjct: 127 ALDTGMRRIGAEPEHAVALARHI-DEDALNLQGIFTHMPVSDTTQGYDFTVEELARFAKA 185

Query: 186 ISHY------KGIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--Q 233
           +         +G+ A      A+S+G+L        + RPGI++YG             +
Sbjct: 186 VDDVQADRATRGLPAVPLVHAAASAGVLGHDLSGLTMVRPGIAIYGAYPDAQTPRTAALR 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            VVT  +++  I++  AGE VSYG       D  IA   +GYADG+    S         
Sbjct: 246 PVVTMRSKVSFIKRIRAGETVSYGRTWTAPTDRWIATVPVGYADGFNRLNSNR------- 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPD----IKLDDVA 347
               G+  I G   P+ G++ MD TM D+   D   +  GD + I G      I  D++A
Sbjct: 299 ----GRMLINGRSFPVAGRVCMDQTMLDLGEADDHGVHRGDDVIIIGASGDEYISTDELA 354

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             +GT +Y++   I  R ++ Y
Sbjct: 355 ELAGTISYEVTAVIPPRVSRQY 376


>gi|226939283|ref|YP_002794354.1| DadB [Laribacter hongkongensis HLHK9]
 gi|254802367|sp|C1DBE8|ALR_LARHH RecName: Full=Alanine racemase
 gi|226714207|gb|ACO73345.1| DadB [Laribacter hongkongensis HLHK9]
          Length = 359

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 101/376 (26%), Positives = 165/376 (43%), Gaps = 35/376 (9%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV-- 62
             +R  +DL A+++N+    A S  +   AV+K +AYG G E++A AL         V  
Sbjct: 3   RPIRATLDLAAIRHNYQQAKACSPESFAFAVIKADAYGHGYEQVAAAL--------AVWP 54

Query: 63  -----TSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                ++      LR    +  I +L G     + +      L     +  Q  +  +  
Sbjct: 55  TVLPSSTSSRARTLREAGLRQPILLLEGCFDRAELEEAARLQLTVPFHAAHQFDWLKQ-G 113

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           S        L+++TG NRLG    EA         +   +L+ +++H A A        +
Sbjct: 114 SLPAPLEVMLKLNTGMNRLGFRPDEAPRAAAWLQARNDIRLAGLMTHFATA--DGDPGIA 171

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQ 233
            QL RF  + +   G+ + +A+S+ ++  P    Q  RPGI LYG +   ++S     ++
Sbjct: 172 AQLSRFDEVNASL-GLPSCVANSAALMRHPASRRQYVRPGIMLYGASPFADQSAAELGLR 230

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +  EA II ++   AG+ V YG      R   I V A GYADGYP             
Sbjct: 231 PAMRLEADIIGVQSLQAGDAVGYGATFVADRPMRIGVVACGYADGYPR-----------V 279

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGT 352
              G    I G    ++G+++MDM   D+T      VGD + ++G D + +DDVA A+GT
Sbjct: 280 APAGTPCAIGGQPARLVGRVSMDMLTIDLTSLPQAGVGDRVTLWGGDGVSIDDVATAAGT 339

Query: 353 TNYDLLVRIGTRYAKF 368
             Y+L+  +  R  + 
Sbjct: 340 IGYELMCALAPRVPRR 355


>gi|121997449|ref|YP_001002236.1| alanine racemase [Halorhodospira halophila SL1]
 gi|254802365|sp|A1WUS2|ALR_HALHL RecName: Full=Alanine racemase
 gi|121588854|gb|ABM61434.1| alanine racemase [Halorhodospira halophila SL1]
          Length = 364

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 101/369 (27%), Positives = 161/369 (43%), Gaps = 19/369 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   R  ++L+AL+ N  +  A +   R  AV+K + YG G   +A AL     + F VT
Sbjct: 2   SRAARATVNLSALRANLRTARAAAPQQRIMAVIKSDGYGHGLAVVAGALTGH-AEAFAVT 60

Query: 64  SVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             +E   LR    + RI +L G             +L  VI +  Q+   ++        
Sbjct: 61  DADEAEALRAAGFRERIVLLQGPFAVDDLARAAAADLELVIHAHWQVEALAQAQ-LASPV 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLER 181
              L+VD+G +RLG   +E  D           +     ++HLACADD        QLE 
Sbjct: 120 TVWLKVDSGMHRLGFPPEEVQDAWRRLTEASCVRADIGFLTHLACADDRDDPATERQLET 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238
           F+       G   S A+S+G+L  P  H+   RPGI LYG +  ++   +   +Q  +  
Sbjct: 180 FQAACDGLPG-PRSAANSAGVLGWPASHYDWVRPGIMLYGASPFVDGRDEQPALQPAMAF 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           + R++ +R   AG+ V YG          + V +IGY DGYP                G 
Sbjct: 239 QGRVVAVRHLRAGDPVGYGATWSCPEAMPVGVVSIGYGDGYPRHA-----------PSGT 287

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G    ++G+I+MDM   D+     +  GD   ++G  ++ ++VA A GT  Y+L 
Sbjct: 288 PVEVAGQRTRLVGRISMDMLAVDLRGLDPVAEGDPAILWGGAVRAEEVAGACGTIAYELF 347

Query: 359 VRIGTRYAK 367
            R+  R  +
Sbjct: 348 CRMPPRVRR 356


>gi|296126374|ref|YP_003633626.1| alanine racemase [Brachyspira murdochii DSM 12563]
 gi|296018190|gb|ADG71427.1| alanine racemase [Brachyspira murdochii DSM 12563]
          Length = 369

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 183/372 (49%), Gaps = 23/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            ++DL+ LKNN   +++++   +   +VK NAYG G  +I+ A    G     V +VEEG
Sbjct: 7   AEVDLSILKNNIEIIHSIANGVKLLNIVKANAYGHGLVEISQASEQFGADALGVATVEEG 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQ 127
           +K+R    +  I VL+     + +++   +LIP+IS+   L +Y + L   G S    ++
Sbjct: 67  IKIRESGVKLPIIVLFQHFKQEAELVCRYDLIPIISNDECLEYYDRYLKKYGGSLKLYIK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS---HVNSVQLERFRT 184
           VDTG NR+G   ++ LD      +     +  I +H A AD            Q++ F  
Sbjct: 127 VDTGLNRMGARAEDVLDLAKKVLSYSTLSIEGINTHYAAADMQDDYSREFTQRQIDIFNN 186

Query: 185 LISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           +I+  K  GI       A+S+ +L   N +F + R GI LYG T        ++ ++  +
Sbjct: 187 VITTLKSNGIVINNVHTANSAALLSYKNTYFDMVRAGIILYGYTYDEAYDLGIKPILNLK 246

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++++LIRK   GE +SYG   +  RD+ IAV  IGYADG    LS              +
Sbjct: 247 SKVVLIRKIKKGESISYGMTWRADRDTNIAVVPIGYADGVSRKLSN-----------NWE 295

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASGTTNYDL 357
             I G   P+ G++ MD  + +I +   I+  D + IFG D  +  + +A    + ++++
Sbjct: 296 VKINGKYYPLRGRVCMDSIIIEIGND-DIKTEDDVLIFGNDKRLNANTLAKRIDSISHEV 354

Query: 358 LVRIGTRYAKFY 369
           LV IG R  + Y
Sbjct: 355 LVNIGDRVTRVY 366


>gi|315586885|gb|ADU41266.1| alanine racemase [Helicobacter pylori 35A]
          Length = 377

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + +S P   
Sbjct: 188 LEQLLEQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSSGMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|302205563|gb|ADL09905.1| alanine racemase [Corynebacterium pseudotuberculosis C231]
 gi|308275798|gb|ADO25697.1| Alanine racemase [Corynebacterium pseudotuberculosis I19]
          Length = 370

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 159/375 (42%), Gaps = 22/375 (5%)

Query: 6   FLRLKIDLTALKNNWHSMN--ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            L  +IDL A+ +N   +   A +  A+   VVK + Y  G  ++A  +   G   F V 
Sbjct: 3   LLEARIDLAAIAHNTRLIKDKAAAQGAQLMCVVKADGYNHGAVEVATVMEENGADQFGVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++ EG+ LR    ++ I                  +     S+  +    +        P
Sbjct: 63  TIGEGLALREGGIESSILSWIWSPEQDLGAAITAEIDLAAISLEHVKALVRASESYGKKP 122

Query: 124 Y--ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++VDTG +R G+  Q+  +      + +  Q++ + SH + AD+  S     Q   
Sbjct: 123 VRVTVKVDTGLHRSGVDKQDWRESFCMLRDAENIQVTGVFSHFSSADESDSTETEQQERA 182

Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F   I   + +        +A+S   L  P+ +F + RPG++LYG      +SH ++  +
Sbjct: 183 FLNAIELGRSLGLELPVNHIANSPATLNRPDLYFDMVRPGLALYGHEPIPGESHGLREAM 242

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   R+ +++    GE  SYG   +  +D  + V  +GYADG P +  G           
Sbjct: 243 SWVGRVTVVKPIARGEGTSYGLTWRAEQDGYLCVVPVGYADGLPRSAQGHL--------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTN 354
             +  I G   P +G++ MD  +  + ++   +  GD   I GP  +   ++A A GT N
Sbjct: 294 --EITIGGRRYPQVGRVCMDQIVVALGENPYGVAQGDEAVILGPTGMTATELATAMGTIN 351

Query: 355 YDLLVRIGTRYAKFY 369
           Y+L+ R   R  + +
Sbjct: 352 YELVCRPCGRTVRVF 366


>gi|297564288|ref|YP_003683261.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848737|gb|ADH70755.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 402

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 26/370 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D++A+ +N   M   + N+   AVVK N +G G  ++A A   AG     VTS+EE + 
Sbjct: 26  VDISAIAHNVRFMAKRT-NSEILAVVKANGFGHGAVEVARASLEAGATWLGVTSLEEALA 84

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYALQVD 129
           LR    +A +                 ++   + SV          +  G      L+ D
Sbjct: 85  LRRAGLRAPVLCWLHRADQDFDSAVAADVDLSVPSVGHLRAVADAAVRTGRVAHVHLKAD 144

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG +R G            +   +L    ++  + SHLA AD P +   + Q+  F   +
Sbjct: 145 TGLSRNGAPPDAWPGLVGLARVLELDGLVRVRGVWSHLASADLPGAATTAQQVTAFEGAL 204

Query: 187 SHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           S  +  G++     LA+++ IL  P  HF L R G+ LYG      +   ++  +T  AR
Sbjct: 205 SQARAAGLDPSLRHLANTAAILNEPATHFDLVRAGVGLYGVEPVEGRRFGLRLAMTLRAR 264

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           + ++R+  AG  VSY       R+SL+A+  +GYADG P                    +
Sbjct: 265 VAMVRRVPAGTGVSYHHAYTTPRESLLALVPLGYADGVPRAAGDR-----------AYVW 313

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDL 357
           I G   P+ G+I MD  + D+   + +  GD + +FGP    +  +++ A  +GT  +++
Sbjct: 314 IAGRRCPVAGRIAMDQFVVDVGG-MDVREGDEVVVFGPGDRGEPTVEEWADWAGTIPHEI 372

Query: 358 LVRIGTRYAK 367
           L  +G R  +
Sbjct: 373 LTGVGARVPR 382


>gi|171909526|ref|ZP_02924996.1| alanine racemase [Verrucomicrobium spinosum DSM 4136]
          Length = 388

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 108/383 (28%), Positives = 163/383 (42%), Gaps = 35/383 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             +I LTAL++N       SG+    AVVK NAYG G   +A AL    V  F V +++E
Sbjct: 16  WAEISLTALRHNAGVARTQSGH-DLMAVVKANAYGHGAVTVARALQEQ-VAVFGVANLQE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
            ++LR       I +L      ++           I+S+ +   +S+L    G +    +
Sbjct: 74  ALELRSAGLDTPILLLGTCLAEEQVPALRAGFHICINSLAEARAWSELAGRLGTTALGHV 133

Query: 127 QVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT- 184
            +DTG  R+G    E   D               + +HL    D  +     Q+E F   
Sbjct: 134 VLDTGMGRMGFIEPEWTEDTVRALVALPHISWEGLATHLPS-PDEDAGFTRRQIELFHQS 192

Query: 185 ----LISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTD--KINKSHPMQ--- 233
                +S  +     LASS+G+L  P  H    L RPG+ LYG           P Q   
Sbjct: 193 VRLAQVSGLQPRWVDLASSAGLLGYPAGHEFCNLVRPGLMLYGVDPLASTGLGDPYQEKL 252

Query: 234 -TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V+T + R+IL+R+   G  +SYG      R + +A  A GYADGYP  +SG       
Sbjct: 253 RPVLTWKTRVILVRELPEGHGISYGRSHVTRRPTRVATLACGYADGYPRQVSG------- 305

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL---SIEVGDYIQIFGPD----IKLDD 345
                    + G   P+LG++TMD  M D+TD      +  GD + + G      I  ++
Sbjct: 306 ---KNAFVLLHGQRCPLLGRVTMDQIMVDVTDFPAGQPVVPGDEVVLLGTQGEAKISAEE 362

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
           VA  +GT ++ +   I  R A+ 
Sbjct: 363 VADKAGTISWHVFTGITARVARV 385


>gi|91064848|dbj|BAE93144.1| alanine racemase [Helicobacter pylori]
          Length = 377

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 94/381 (24%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR + P+  I +L         ++ D +L  ++ S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFPKTPILILGYSPNANASMLVDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTD--KINKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG     ++ +S P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLARALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + D    + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|227872694|ref|ZP_03991023.1| alanine racemase [Oribacterium sinus F0268]
 gi|227841454|gb|EEJ51755.1| alanine racemase [Oribacterium sinus F0268]
          Length = 360

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 98/362 (27%), Positives = 172/362 (47%), Gaps = 29/362 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             ++L+ L++N  ++ + L    +  AVVK +AYG G  ++A A+       F V ++EE
Sbjct: 13  AVVELSYLQDNIKAVKSHLRKGMQFCAVVKMDAYGHGIVEVARAVEEE-CALFGVATIEE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           G+ LR       I +L  +  GQ + ++  +++P + +  Q    S +    G S P  L
Sbjct: 72  GIILRKGGITTPILILGVVPKGQYRSLWHYDIMPSLFTREQGEALSAISKKEGKSLPCHL 131

Query: 127 QVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +DTG  R+G+ +++  A++     F+    ++  I SH AC DD       +Q  RF  
Sbjct: 132 ALDTGMGRIGIQVEKEGAVELGLELFSLSGIEICGIFSHFACCDDRDKSYTEMQERRFAD 191

Query: 185 LISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVT 237
            +     +GI+     L++S+GIL G    + + R GI++YG      + +  P++ V++
Sbjct: 192 YLRALEERGIKLPLCHLSNSAGILEGRGVQYDMVRDGIAMYGLYPSKDMERKLPLKQVLS 251

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +A+I  I++  +GE +SYG          +A   +GY DGYP  LS             
Sbjct: 252 WKAKISHIKEVPSGEAISYGASFVTREPMRVATVPVGYGDGYPRVLSN-----------K 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
            K  + G   PILG++ MD  M D++ +   E+   + + G     +I L D     G  
Sbjct: 301 AKVLVGGKPCPILGRVCMDQFMIDVSHT-EAEIFQEVTLLGQEGEEEISLYDW-EEWGVF 358

Query: 354 NY 355
           +Y
Sbjct: 359 SY 360


>gi|331090918|ref|ZP_08339761.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405472|gb|EGG85005.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 369

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 103/377 (27%), Positives = 170/377 (45%), Gaps = 31/377 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              L+IDL  +K N + +  +        AV+K NAYG G   +   L   G+  F V +
Sbjct: 2   RAWLEIDLEKIKWNVNCLRNMMPSGCEMMAVIKANAYGHGAVPVGKMLNGMGIYSFAVAT 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           V+EG++LR       I +L      + + +   +LI  I       +  ++  CG S   
Sbjct: 62  VDEGIELRENGIIGDILILGYTDLKRMEEVVRYDLIQTIVDE---RYGEEMNKCGFSIQA 118

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLER 181
            L++D+G +RLG+ L E ++ T   FN +  ++  + +HL  +D            Q+E+
Sbjct: 119 ELKIDSGMHRLGV-LAENIEETEKVFNLQNLRIKGMFTHLYESDSLEKEAVEKTEKQIEK 177

Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGG----TDKINKSHPM 232
           F  L+ + K       +  + SS G+L  P   +   R GI+L+G      DK     P+
Sbjct: 178 FDRLVDNLKQRGIVIPKLHIQSSYGLLNYPQLQYDYVRIGIALFGVLSSKQDKTKVKLPL 237

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  ++ +A +  +R+  +GE   Y G      D  IA  +IGYADG P  LSG       
Sbjct: 238 QPALSLKALVTSVREIKSGETAGYSGAYHAEADRKIAAVSIGYADGIPRNLSGT------ 291

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                 K  + G    I+GKI MD  + D+T    +  GD + + G     ++ + D+A 
Sbjct: 292 ----NNKVIVHGQKTSIIGKICMDQLLIDVTMIKDVRAGDTVTLIGREGEEEVSVLDMAD 347

Query: 349 ASGTTNYDLLVRIGTRY 365
            +GT   ++  R+G R 
Sbjct: 348 KAGTIANEIFSRLGKRL 364


>gi|223938778|ref|ZP_03630666.1| alanine racemase [bacterium Ellin514]
 gi|223892476|gb|EEF58949.1| alanine racemase [bacterium Ellin514]
          Length = 392

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 104/379 (27%), Positives = 167/379 (44%), Gaps = 25/379 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                ++IDL  L+ N+  +    +   +   VVKD AYG G  K+A A   AGV+   +
Sbjct: 24  RRPAWIEIDLKQLRRNYEVINREKTKGLKLLLVVKDEAYGHGGLKVAKAALEAGVEFLSL 83

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
           ++++E + LR      RI +L      +       NL   + S   +    KL    G  
Sbjct: 84  SNLDEAMALRGGGIDTRILLLGERQDEELPWCVAQNLTCCVDSQEVVLKLGKLAEKVGRP 143

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P  L+++TG NR G+   EAL       + K  Q   ++SH A +D+      ++QLER
Sbjct: 144 VPVHLKINTGMNRYGVRWTEALALVEFILSTKSLQFEGVLSHFAMSDELDKTFANLQLER 203

Query: 182 FRTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234
           F+ +++    K I      + +S G L  P  HF + R G+  YG        +   +  
Sbjct: 204 FKMVLAELADKSIHVKYRHICNSGGFLDLPQAHFDMVRIGLLQYGVYPSQVCRRIPGIAP 263

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ +ARI   +   A ++V YG + K      I V  IGY DGYP             +
Sbjct: 264 VMSVKARIAAFQNIEAEDVVGYGMRYKAPSPRRIGVIPIGYGDGYPR------------I 311

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   I+G   P++G + MD  M D+TD    ++ + I + G     +I + DVA   
Sbjct: 312 RNEGYVLIRGRRAPLVGGVAMDAIMVDVTDVPEAQLWEEIVLMGRQGDEEISVHDVARWK 371

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            + +YD+L     R  + Y
Sbjct: 372 NSVSYDILTGWRARLPRIY 390


>gi|302877856|ref|YP_003846420.1| alanine racemase [Gallionella capsiferriformans ES-2]
 gi|302580645|gb|ADL54656.1| alanine racemase [Gallionella capsiferriformans ES-2]
          Length = 353

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 171/366 (46%), Gaps = 22/366 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  ID  AL+NN H     + ++R  AV+K + YG G  ++A AL  A  + F +  
Sbjct: 3   RPIQALIDQNALENNLHVARR-AASSRIMAVIKADGYGHGLLRVAEAL--AAAEGFALLD 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +++ V+LR    +  I +L G     +  +     L  VI S  Q+         G +  
Sbjct: 60  IQDAVRLREAGYRQTILLLEGFFDAADLALIAAYELTTVIHSNWQIALLDAYPGRG-TLD 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G +RLG S +       +       +   ++SH + AD+P     S+QL    
Sbjct: 119 VWLKVNSGMHRLGFSPEGVNAAMKSLRAHAAVREITLMSHFSHADEPRG--VSLQLALIN 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
            + S Y+ +  SLA+S+ +L  P  H    RPG+ LYG +   + S     ++ V+T  +
Sbjct: 177 EIASEYR-VARSLANSAALLRYPATHGDWVRPGVMLYGASPFADTSAQQLGLKPVMTLSS 235

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII I+   AG+ V Y G  +  R   I V A GYADGYP                G   
Sbjct: 236 RIIAIQNLQAGDEVGYAGVFRADRTMRIGVVACGYADGYPRHAPN-----------GTPV 284

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G    +LG+I+MDM   D+T      +G  + ++G  + ++ VA A+GT +Y+L+  
Sbjct: 285 LVDGRKTQLLGRISMDMLCVDLTALPDSGMGAQVTLWGQGLPVETVAAAAGTISYELMCG 344

Query: 361 IGTRYA 366
           +  R  
Sbjct: 345 LTARVP 350


>gi|296138608|ref|YP_003645851.1| alanine racemase [Tsukamurella paurometabola DSM 20162]
 gi|296026742|gb|ADG77512.1| alanine racemase [Tsukamurella paurometabola DSM 20162]
          Length = 380

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 160/373 (42%), Gaps = 26/373 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+ +N   +   +  A   AV+K + YG G   +A A    G  +  VT+V+E + 
Sbjct: 18  IDLGAVTHNVRVVARHAPTADVMAVLKADGYGHGAVPVARAALAGGATELGVTTVDEALV 77

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVD 129
           LR       I         +  I  D  +   +SS  Q     +     G      ++VD
Sbjct: 78  LRDAGITVPILSWLSTSGYERAIAADVRI--GVSSPRQLAEVLAAAGRAGAPAVLHVKVD 135

Query: 130 TGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-----LER 181
           TG NR G++  E     D   ++    L +L  + +HLA  D+P      VQ        
Sbjct: 136 TGLNRNGVAPHEWATTRDALVDAERAGLARLQGVFTHLAHGDEPDHPFLDVQRDALAAAA 195

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
                      +   A+S+  L  P+ HF L RPGI++YGG    ++   ++ V+T  A 
Sbjct: 196 ADARAHGLYPTQVHAANSAAALTRPDLHFDLVRPGIAIYGGVPVPDRDFGLRPVMTFAAP 255

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +IL++   AG+ VSYG      RD+++ +   GYADG    LSG             +  
Sbjct: 256 VILVKPLAAGDGVSYGHTWIAPRDTVVGLVPAGYADGVWRPLSGRF-----------EVT 304

Query: 302 IKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDI---KLDDVALASGTTNYDL 357
           ++G   P +G++ MD  + D+  D   +  GD   +FG      +  D     GT +Y++
Sbjct: 305 VQGRRFPQVGRVCMDQFVIDLGPDGGGVSEGDTAVLFGAAPGAARACDWGEKLGTIDYEV 364

Query: 358 LVRIGTRYAKFYT 370
           L  +  R  + YT
Sbjct: 365 LTAVRGRVHREYT 377


>gi|261838314|gb|ACX98080.1| alanine racemase [Helicobacter pylori 51]
          Length = 377

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRTLKGLEIEGIFTHLSNADSNIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|163853336|ref|YP_001641379.1| alanine racemase [Methylobacterium extorquens PA1]
 gi|163664941|gb|ABY32308.1| alanine racemase [Methylobacterium extorquens PA1]
          Length = 342

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 121/353 (34%), Positives = 185/353 (52%), Gaps = 14/353 (3%)

Query: 18  NNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ 77
            NW ++ A +  A   AVVK +AYG G   +APAL+ AG + FFV  + EG+  R   P+
Sbjct: 3   ANWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKILPE 62

Query: 78  ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137
           A ++VL G+ PG+ +      L PV+    +L  +++ M      P AL VDTG NRLGL
Sbjct: 63  AALYVLNGLPPGRAEAFRAHRLRPVLGDAQELAEWAEAMQGA--GPAALHVDTGMNRLGL 120

Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           S+ EAL    +    + G + L++SHL  A+ P   +N+ Q   F  + + +  + ASLA
Sbjct: 121 SVAEALALAGDPVIARAG-IDLVMSHLVSAERPGDPLNARQAADFARVRAAFPQMRASLA 179

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
           +SSG  L  +    L RPG +L+GG     + +PM+ VV  EA I+ +R   AG    Y 
Sbjct: 180 NSSGTCLANDARHDLLRPGYALFGGNPDPGQPNPMRPVVRLEATILQVRDVEAGATCGYN 239

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
            + +      +A  ++GYADGYP + S             G   + G   PI+G I+MD+
Sbjct: 240 ARWQAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGVPCPIVGLISMDL 288

Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            + D+TD+     G    + G  + +D V  A+GT  Y++L  +G+RY + Y 
Sbjct: 289 IILDVTDATQARRGGTATLIGDSLDIDTVGHAAGTIGYEILTSLGSRYVRNYV 341


>gi|227533031|ref|ZP_03963080.1| alanine racemase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189432|gb|EEI69499.1| alanine racemase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 378

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 152/379 (40%), Gaps = 30/379 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               + ID TA+ +N  H +  L    +  AVVK +AYG G  ++A     AG   F V 
Sbjct: 7   RPATVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E + LR       + VL  +      I     +   +SS   L     ++      P
Sbjct: 67  ILDEALGLRKADYSEPVLVLGIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELP 126

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                L +DTG  R+G +  +AL         + K   +  + +H A AD P       Q
Sbjct: 127 PLRIHLALDTGMGRIGFTEDQALKTAVAFVEAHPKQFVIEGVFTHFATADAPDDTYFKQQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232
           +++F  L+           +++S+  L     +  + R G+++YG     +       P+
Sbjct: 187 VDKFNHLVDLLPSRPRYVHVSNSATSLWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +   ++  AG+ +SYG   +   D  I    IGYADG+   L G       
Sbjct: 247 EPALSLESELTYCKQVHAGDGISYGVTYRAKGDESIGTVPIGYADGWLRRLQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G    I+G+I MD  M  +  +     G  + + G     +I L DVA 
Sbjct: 301 ------HVLVDGQYCEIVGRICMDQFMIRLPKAYPA--GTKVVLVGQSGDQEITLLDVAK 352

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T +Y++   +  R  +
Sbjct: 353 YSKTIHYEIACNLTPRLKR 371


>gi|255100756|ref|ZP_05329733.1| serine/alanine racemase [Clostridium difficile QCD-63q42]
          Length = 712

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 110/380 (28%), Positives = 173/380 (45%), Gaps = 31/380 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +     ++IDL  L++N   +  A+  +    AVVK NAYG    ++A      GV+ F 
Sbjct: 342 NTNRAWIEIDLNNLEHNVKMIQKAMPEDCELMAVVKANAYGHSAFEVATCANQIGVKAFA 401

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V +++EG+ LR Y     I +L   +P + K +   NL   +  +        L     +
Sbjct: 402 VATIDEGIDLRRYGILGEILILGYTNPIRAKELHKYNLTQSVIDL---NHAISLNKQKYN 458

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQ 178
               +++DTG +RLG  + +       +F  K   +  I +HL  +D   D      + Q
Sbjct: 459 IKSHIKIDTGMHRLGFDVNDVRSILK-AFKLKYLDICGIFTHLCVSDSLKDEDVDFTNKQ 517

Query: 179 LERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230
           +E F  LI     KG++     + SS G    PN      R GI+LYG     N +    
Sbjct: 518 IECFYKLIDFLLKKGVKIPKVHIQSSYGFFNYPNLKCNYVRIGIALYGILSSPNDTTKLQ 577

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V++ ++++ILIRK    +   YG     +RDS+IA+ +IGYADG P  LS     
Sbjct: 578 LDLRPVLSLKSQVILIRKIQKDDSFGYGRVFIASRDSVIAILSIGYADGIPRNLS----- 632

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                       I G    I+G+I MD    DITD  ++EVG+   I G D    +   +
Sbjct: 633 -----CGKSYVIINGCRAAIVGRICMDQLAVDITDIPNVEVGNTAIIIGRDNLSELSASE 687

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA  S + + +LL R+G R 
Sbjct: 688 VANNSCSISNELLSRVGRRL 707


>gi|163754461|ref|ZP_02161583.1| alanine racemase [Kordia algicida OT-1]
 gi|161325402|gb|EDP96729.1| alanine racemase [Kordia algicida OT-1]
          Length = 369

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 153/371 (41%), Gaps = 22/371 (5%)

Query: 9   LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVE 66
           L+I+  AL+ N+  + + +  + +  AVVK   YG    ++A  L +   V  F V  + 
Sbjct: 9   LEINFKALQQNFEFLKSKTKADTKFLAVVKAFGYGSDAIEVAKFLQDELNVDYFAVAYIR 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPY 124
           EG  LR       I VL+       K     NL P + +      ++K  +      +P 
Sbjct: 69  EGAYLRAAGITTPILVLHP-QIVNLKHAIAYNLEPSLYNDRIFNAFAKEAAKQGKKDYPV 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFR 183
            L+ +TG NRLG    +              +   + SHLA ++D +       Q+  F 
Sbjct: 128 HLKFNTGLNRLGFFHTDTDYIFKKLKTLSQIKAVSLFSHLAASEDKNEIDFTKNQIRLFN 187

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
            ++++++          + ++SGIL  P  HF + R GI LYG  +       +Q V + 
Sbjct: 188 DVVANFEQTFNYKPILHMTNTSGILNYPEAHFDMVRTGIGLYGFGNDPKYDKHLQPVASL 247

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ I  I +   GE V Y         + IA   IG+ADG                   G
Sbjct: 248 KSVISQIHRIEKGESVGYNRAFVANDYTTIATIPIGHADGISRQFGNGV----------G 297

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I G   PI+G + MDM M +IT       GD + IFG     +++A    T +Y++L
Sbjct: 298 SVVINGKKAPIIGNVCMDMLMVNITGI-RCNEGDEVIIFGEGQTAEELASKINTISYEIL 356

Query: 359 VRIGTRYAKFY 369
             +  R  + +
Sbjct: 357 TAVSQRIKRVF 367


>gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
 gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
          Length = 825

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 96/371 (25%), Positives = 163/371 (43%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + L    +   ++K +AYG G  +IA +L +  V    V   +E
Sbjct: 466 LEVNLNAVVDNLNYYRSFLKPETKLVCMIKADAYGAGSVEIAKSLQDHQVDYLAVAVADE 525

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR     + I ++        K +FD +L P + S   L    K        + P  
Sbjct: 526 GAMLRGNGITSSIMIMNP-ELSAFKTMFDNDLEPEVYSFRLLDALVKAAEKEGITNFPVH 584

Query: 126 LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG   ++ LD       ++       + SH   AD       +++Q ERF 
Sbjct: 585 IKLDTGMHRLGFDPEKDLDKLIEKLQHQNAVIPRSVFSHFVGADSDDFDSFSALQFERFD 644

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P +   + R G+ LYG   + N+      V T 
Sbjct: 645 RASKRLQQAFEHKILRHMDNSAGIEHFPGWQMDMCRLGLGLYGVNSRNNEIINN--VSTL 702

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ I+ +R+  A E V Y  + KL RDS+IA   IGYADG    L              G
Sbjct: 703 KSTILQLRRVPADETVGYSRKGKLMRDSVIAAIPIGYADGLNRHLGNRR----------G 752

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ + D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 753 YCLVNGCKAEYVGNICMDVALVDVTGI-DCKEGDTVEIFGDHLPVTVLSKILDTIPYEVL 811

Query: 359 VRIGTRYAKFY 369
             + +R  + Y
Sbjct: 812 TSVSSRVKRIY 822


>gi|169824891|ref|YP_001692502.1| alanine racemase [Finegoldia magna ATCC 29328]
 gi|167831696|dbj|BAG08612.1| alanine racemase [Finegoldia magna ATCC 29328]
          Length = 391

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 100/379 (26%), Positives = 159/379 (41%), Gaps = 30/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LK+DL  LK+N+  +  +S   +  AVVK NAYG G   I   L   G+  F V+++ E 
Sbjct: 8   LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L  I     ++    N+   +      +   +   S        ++
Sbjct: 68  LELRKNGIFKPIMILGYISNENIEVAIKNNIELTVYDYDTAVEINNVAKSLNKICKVHIK 127

Query: 128 VDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +DTG  RLG  +     + L+     +      L  I SH + AD         Q   + 
Sbjct: 128 IDTGMTRLGFQVRLDRDKCLEEIFKIYKMDNVVLQGIYSHFSDADSEDYSYTKEQYNTYI 187

Query: 184 TLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQT 234
             +     +GI      +A+ +G ++   Y   + R GI LYG         N    ++ 
Sbjct: 188 GFMIDVENRGITVPIKHIANDAGAIIH-GYFLDMIRCGIGLYGYHASDYVRENSRLNLEE 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           + +    + +I+    G  + YG       ++++A A IGYADGYPL LS          
Sbjct: 247 ISSLYTTVSMIKTVPKGTDIGYGRTFTTNSETVVATATIGYADGYPLELSN--------- 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
                  I G    ILGK+ MD  M D+T    ++VGD + +FG D    I L  +A  +
Sbjct: 298 --KAYVIINGKKAKILGKVCMDQIMIDVTYIRDVKVGDKVLLFGKDDMGEISLYKLAEMA 355

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  Y+LL R+  R  + Y
Sbjct: 356 NTNVYELLCRVTMRIPRIY 374


>gi|15611943|ref|NP_223594.1| alanine racemase [Helicobacter pylori J99]
 gi|9789719|sp|Q9ZKQ9|ALR_HELPJ RecName: Full=Alanine racemase
 gi|4155452|gb|AAD06456.1| ALANINE RACEMASE [Helicobacter pylori J99]
          Length = 377

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 167/382 (43%), Gaps = 32/382 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N++++  +   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTHSLRHNFNAVKNIVPKDACVMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  Q  I +L         ++ D +L  ++ S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSQTPILILGYSPNTNASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPTFKSIETIKKIRALKGLEVEGIFTHLSNADSNIKTHAKNQMKVFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQT-- 234
           +     + IE       +S+GIL   N +      L RPGI LYG           QT  
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESSQTIL 247

Query: 235 --VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V++ +ARI+ I++   GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKARIVQIKRVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348
                 +  I   + P++GK+ MD     + D    + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-EAKEGDEVILFGDKSTKANDASEIAT 355

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
              T  Y+ +  +  R  + Y 
Sbjct: 356 LLNTIPYETISTLSKRLERVYV 377


>gi|146277115|ref|YP_001167274.1| alanine racemase [Rhodobacter sphaeroides ATCC 17025]
 gi|226711058|sp|A4WRF5|ALR_RHOS5 RecName: Full=Alanine racemase
 gi|145555356|gb|ABP69969.1| alanine racemase [Rhodobacter sphaeroides ATCC 17025]
          Length = 349

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 186/363 (51%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L IDL A+  NW +++ + + + +T AVVK +AYGLG  K+A AL  AG + FFV + EE
Sbjct: 6   LTIDLDAIAANWRALDQMTASDCQTGAVVKADAYGLGAAKVAHALARAGARRFFVAACEE 65

Query: 68  GVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G ++R        I V  G   G   +I D +L P+++S+ Q    ++        P+ L
Sbjct: 66  GAEVRRALGSGPQICVFSGHMEGDTALIRDFDLTPMLNSIEQ---LTRHFETLGGQPFGL 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G NRLGL   E       +         L++SHLACAD+P   +N+ QL  FR + 
Sbjct: 123 QLDSGMNRLGLEPGEWEAVAATALEAG---PELLMSHLACADEPDHPMNTEQLRAFRAMT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
               G+  SL+++ GILLGP +HF+LTRPGI LYGG          + VV     ++ +R
Sbjct: 180 DG-TGVPRSLSATGGILLGPAWHFELTRPGIGLYGGRPFEEA----RPVVHLSLPVVQVR 234

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   GE V Y         S IA  A GYADG P TLS   S  +  V            
Sbjct: 235 EVEIGEPVGYSNSWTAEHTSTIATVAAGYADGLPRTLSSRASLFAGRVP----------- 283

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P++G+++MD+   D++    +   D + I       DD+A  +GT  Y++L  +G RY 
Sbjct: 284 CPLVGRVSMDLITVDVSHLPEVP--DALDILCRHQTPDDLADTAGTIGYEILTSLGRRYQ 341

Query: 367 KFY 369
           + Y
Sbjct: 342 RRY 344


>gi|191639471|ref|YP_001988637.1| Alanine racemase [Lactobacillus casei BL23]
 gi|226711049|sp|B3WAR0|ALR_LACCB RecName: Full=Alanine racemase
 gi|190713773|emb|CAQ67779.1| Alanine racemase [Lactobacillus casei BL23]
 gi|327383565|gb|AEA55041.1| Possible alanine racemase [Lactobacillus casei LC2W]
 gi|327386757|gb|AEA58231.1| Possible alanine racemase [Lactobacillus casei BD-II]
          Length = 378

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 152/379 (40%), Gaps = 30/379 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               + ID TA+ +N  H +  L    +  AVVK +AYG G  ++A     AG   F V 
Sbjct: 7   RPATVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E + LR       + VL  +      I     +   +SS   L     ++      P
Sbjct: 67  ILDEALGLRKADYSEPVLVLGIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELP 126

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                L +DTG  R+G +  +AL         + K   +  + +H A AD P       Q
Sbjct: 127 PLRIHLALDTGMGRIGFTEDQALKTAVAFVEAHPKQFVIEGVFTHFATADAPDDTYFKQQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232
           + +F  L++          +++S+  L     +  + R G+++YG     +       P+
Sbjct: 187 VNKFNHLVNLLPSRPRYVHVSNSATSLWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +   ++  AG+ +SYG   +   D  I    IGYADG+   L G       
Sbjct: 247 EPALSLESELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G    I+G+I MD  M  +  +     G  + + G     +I L DVA 
Sbjct: 301 ------HVLVDGQYCEIVGRICMDQFMIRLPKAYPA--GTKVVLVGQSGDQEITLLDVAK 352

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T +Y++   +  R  +
Sbjct: 353 YSKTIHYEIACNLTPRLKR 371


>gi|169632127|ref|YP_001705863.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii
           SDF]
 gi|226711023|sp|B0VNF6|ALR_ACIBS RecName: Full=Alanine racemase
 gi|169150919|emb|CAO99526.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter
           baumannii]
          Length = 367

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 146/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R       I +L G+  P          L   I S  Q+ +  +         
Sbjct: 61  LEEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G +RLG   Q  +       N         + H + AD           Q+  
Sbjct: 120 VFLKMNSGMSRLGFKPQHYVQAWERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  ++    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEEIVKDLPG-ERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++     E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+++MDM   D+T   S +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTARV 361


>gi|254437149|ref|ZP_05050643.1| alanine racemase [Octadecabacter antarcticus 307]
 gi|198252595|gb|EDY76909.1| alanine racemase [Octadecabacter antarcticus 307]
          Length = 345

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 132/363 (36%), Positives = 191/363 (52%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL +NW S++A++ +  T AVVK N YGLG  K+  AL  AGV+ FFV   +EG
Sbjct: 6   LSVDLDALSSNWRSLDAMT-DVETCAVVKANGYGLGVAKVGRALMKAGVKRFFVAVAQEG 64

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR    P   I +  G   G   +I D  L P+I++V Q    ++ +     HP+ +Q
Sbjct: 65  VTLRQALGPNVEICIFAGHMRGDTDMIADMMLTPIINTVGQ---LTRHLEALPEHPFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL + E       + ++      L++SHLACAD P   +N  QL++F  +  
Sbjct: 122 IDTGMNRLGLEIDEWASVAEIALSQN---CRLVMSHLACADTPDHPMNRQQLDQFHLMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GILLGP YHF +TRPGI LYGG    +       V   +  +I +R 
Sbjct: 179 GI-NVPRSLAATGGILLGPEYHFDMTRPGIGLYGGAPFTDA----LPVAYLDLPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y       R S IA  + GYADG    LS            G   +     V
Sbjct: 234 VNVGETVGYANAWTAQRQSKIATVSGGYADGLTRALS-----------AGANLWHGAQAV 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+++MD+   D+TD   +  G  + I GPD  +D +A  +GT  Y++L  +G+RY +
Sbjct: 283 PLVGRVSMDLITADVTDLPEL-PG-VLSILGPDQTVDQLAERAGTIGYEILTSLGSRYQR 340

Query: 368 FYT 370
            Y+
Sbjct: 341 RYS 343


>gi|169797698|ref|YP_001715491.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii
           AYE]
 gi|213155508|ref|YP_002317553.1| alanine racemase [Acinetobacter baumannii AB0057]
 gi|215485052|ref|YP_002327293.1| alanine racemase [Acinetobacter baumannii AB307-0294]
 gi|301346049|ref|ZP_07226790.1| alanine racemase [Acinetobacter baumannii AB056]
 gi|301511955|ref|ZP_07237192.1| alanine racemase [Acinetobacter baumannii AB058]
 gi|301596084|ref|ZP_07241092.1| alanine racemase [Acinetobacter baumannii AB059]
 gi|332853589|ref|ZP_08434841.1| alanine racemase [Acinetobacter baumannii 6013150]
 gi|332869280|ref|ZP_08438691.1| alanine racemase [Acinetobacter baumannii 6013113]
 gi|169150625|emb|CAM88534.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii
           AYE]
 gi|213054668|gb|ACJ39570.1| alanine racemase [Acinetobacter baumannii AB0057]
 gi|213988697|gb|ACJ58996.1| alanine racemase [Acinetobacter baumannii AB307-0294]
 gi|332728553|gb|EGJ59926.1| alanine racemase [Acinetobacter baumannii 6013150]
 gi|332732837|gb|EGJ64051.1| alanine racemase [Acinetobacter baumannii 6013113]
          Length = 367

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 146/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKT--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R       I +L G+  P          L   I S  Q+ +  +         
Sbjct: 61  LEEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q  +       N         + H + AD           Q+  
Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLVNVAKITHMMHFSDADGDRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  ++    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEEIVKDLPG-ERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++     E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+++MDM   D+T   S +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLSIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTARV 361


>gi|317180214|dbj|BAJ58000.1| alanine racemase, biosynthetic [Helicobacter pylori F32]
          Length = 377

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNANASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|91977460|ref|YP_570119.1| alanine racemase [Rhodopseudomonas palustris BisB5]
 gi|91683916|gb|ABE40218.1| alanine racemase [Rhodopseudomonas palustris BisB5]
          Length = 409

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 185/365 (50%), Gaps = 10/365 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+  NW  +   +  A  AAVVK +AYG G   ++ AL  AG + FFV ++ E 
Sbjct: 36  LTVDLDAIVANWRKIEKTAVPAEAAAVVKGDAYGCGIGPVSKALAAAGCKTFFVATLGEA 95

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
             +R   P A I+VL G            N  PVI  + +L  +         S   A+ 
Sbjct: 96  GAVRAIAPDAVIYVLDGFFQTTGDEFARLNCRPVIGDLYELAEWDVYCRRTRWSGGAAIH 155

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL++ EA            G ++L+ISHLA A+  +  +N+ Q+  FR + S
Sbjct: 156 IDTGMNRLGLTVAEAQGIVPRIAAGDHG-ITLVISHLAAAEALNHPMNARQVTAFREIAS 214

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSG+ LGP + F + RPG +LYG        +PM+ VV  +ARI+ +R 
Sbjct: 215 LFTGVAASLSASSGVFLGPQFAFDMVRPGAALYGINPTPEADNPMKPVVDLKARIVQVRS 274

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YGG     R + IAV + GYADGY       D         G    I G   
Sbjct: 275 VERGDSVGYGGTWTARRPTRIAVLSAGYADGYFRAAGSNDGTR------GADVVIAGQRC 328

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI G+++MD+   D+TD    +   G    + G  I +D++    GT  Y++L  +G RY
Sbjct: 329 PIAGRVSMDLLAVDVTDLPANAARRGLMATLIGDGITVDELGHHFGTIGYEVLTSLGARY 388

Query: 366 AKFYT 370
           A+ Y+
Sbjct: 389 ARIYS 393


>gi|317182240|dbj|BAJ60024.1| alanine racemase, biosynthetic [Helicobacter pylori F57]
          Length = 377

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++ ++L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSSSLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNANASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEIEGIFTHLSNADSNIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD   +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEAILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|294084215|ref|YP_003550973.1| alanine racemase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663788|gb|ADE38889.1| alanine racemase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 383

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 192/377 (50%), Gaps = 27/377 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+ IDL A+ +NW  +++LS  +   AA+VK N YGLG   +  ALY AG + FFV +++
Sbjct: 18  RIDIDLGAIAHNWLYLDSLSPKSTITAAMVKANGYGLGANHVGAALYKAGCRQFFVANLD 77

Query: 67  EGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGV 120
           E V  R Y        A+I VL+G H GQE  +    L PV++ + Q++ +     +   
Sbjct: 78  EAVSFRTYLDNISISDAQIMVLHGCHRGQEHDMRAYRLTPVLNDLEQVSRWRLYAQNANE 137

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           ++P  L +DTG  RLG    +      N       +++ I+SHL   +      N+ Q  
Sbjct: 138 TYPAMLHLDTGMTRLGFDPDQTDWLIENKQALNGLEITYIMSHLISGEISDDPANTAQKT 197

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTV 235
           RF    S + GI+ASLA+S G+ LG  +H+Q+TRPGI++YG         I  S+ +++ 
Sbjct: 198 RFDEYRSFFGGIKASLANSGGVFLGNEFHYQMTRPGIAIYGVHPCGKDQAITDSNGLKSC 257

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T   RII +R A  G  V YGG  +L+R S IA   +GYADGY   LS           
Sbjct: 258 ITWHGRIIQVRTAPEGATVGYGGTHRLSRPSRIATVGVGYADGYQRNLSN---------- 307

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALASGT 352
                 I G+  P++G+I+MD    D+TD      ++  +   +      ++D+A  + T
Sbjct: 308 -KAFVNILGHRAPVIGRISMDSITIDVTDIPPNIMLKA-ETAALLSDLYSIEDMANDAST 365

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  I  R  + Y
Sbjct: 366 IPYEILTGISRRAIRRY 382


>gi|78186168|ref|YP_374211.1| alanine racemase region [Chlorobium luteolum DSM 273]
 gi|78166070|gb|ABB23168.1| alanine racemase [Chlorobium luteolum DSM 273]
          Length = 372

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 156/375 (41%), Gaps = 25/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                 I L  L+ N   +   +G     AVVK NAYG G  + A AL   G+  F V +
Sbjct: 8   PMAEALIRLQHLQENARLIRKKAG-VPLMAVVKANAYGHGARETARALLAEGIGHFGVAN 66

Query: 65  VEEGVKLRLYTPQAR---IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
           + E ++LR      R   I       P Q     +  +   +     L     + S  G 
Sbjct: 67  IHEAIELRTCGSLKRPAAILSFSSPLPSQIPSYLEHGIEMTVCDPATLRAAEAVASGAGA 126

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +    L+VDTG  RLGLS  EA             +L  I +H A +          QLE
Sbjct: 127 TIGVHLKVDTGMGRLGLSPAEAKQVLQELPRCPHIELRGIYTHFADSSF-DRAFTRKQLE 185

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQ 233
            FR     Y+      +    A+S  IL  P+  F + RPGI LYG     +      ++
Sbjct: 186 AFRAFTGEYEHASGRRVLKHAANSGAILSEPDATFDMVRPGILLYGCHPSNDAHLRLDVK 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  EAR++ ++   AG  +SY    K     +IA  A GYADGY  +LSG        
Sbjct: 246 PVMQVEARVVFLKTVTAGTTISYNRTWKAAGPRIIATIAAGYADGYHRSLSG-------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGT 352
                   I     P +G ITMD  M D+     + VGD   +FG D ++ +++A  +GT
Sbjct: 298 ---KATVSINAITYPQVGTITMDQIMVDLGTESDVRVGDRAVLFGWDGMRAEELASRAGT 354

Query: 353 TNYDLLVRIGTRYAK 367
            +Y+LL  +  R  +
Sbjct: 355 ISYELLTSVSARVLR 369


>gi|308062256|gb|ADO04144.1| alanine racemase [Helicobacter pylori Cuz20]
          Length = 377

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 93/381 (24%), Positives = 172/381 (45%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSTVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR Y  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSYFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEIEGIFTHLSNADSNIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + +S P   
Sbjct: 188 LEQLSNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAT 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|291557577|emb|CBL34694.1| alanine racemase [Eubacterium siraeum V10Sc8a]
          Length = 379

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 159/373 (42%), Gaps = 24/373 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    +IDL AL++N++ +  L+      AVVK NAYG   + +   L   GV+ + V++
Sbjct: 6   KRAWAEIDLDALEHNYNEIKKLAKGKDILAVVKANAYGHDDKAVCLKLQELGVKYYGVSN 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           + EG KLR +     I             + +  +     SV      S    S GV  P
Sbjct: 66  LWEGEKLRQHGITGTILTFGYTDEDYFDELLEYGITQTAGSVQYAKQLSDYAVSKGVKLP 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLE 180
             ++V+TG  R+G+  Q+ +    +             +H A AD            Q E
Sbjct: 126 VHIKVNTGMTRVGIDSQQEM---LDILAMPGLDCKAAYTHFAAADSLDPSDVEYTDRQQE 182

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTA 238
           +    I+  KG+     +S GI+   ++   + R G+ LYG      +     M++V+T 
Sbjct: 183 KLMK-IAKDKGLFIHSQNSGGIIYHGDFGGDIVRAGVILYGHYPNYPLEVPFDMKSVMTV 241

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +  ++   AG  +SYG      ++  +AV  IGYADGY    S             G
Sbjct: 242 KSVVSQLKTIPAGTQISYGRTYTAEKEMTVAVIPIGYADGYFRDFS-----------SKG 290

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNY 355
           K  I G +  ++G++ MD T+ D+++   I+ GD + ++     +  +D  A    T  Y
Sbjct: 291 KMLINGVLCNVVGRVCMDQTIVDVSNVPDIKTGDIVYVYSDKCRETSVDYNASLIDTIGY 350

Query: 356 DLLVRIGTRYAKF 368
           +L   +  R  + 
Sbjct: 351 ELTCAVALRIPRV 363


>gi|302337870|ref|YP_003803076.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
 gi|301635055|gb|ADK80482.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
          Length = 371

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 162/378 (42%), Gaps = 24/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              + +IDL   ++N   ++  +G  +   VVK NAYG G  K+A     AG Q   V +
Sbjct: 2   RPTKARIDLDLYRHNIRVISKKTGGRKICLVVKANAYGHGSVKMAKVGIEAGAQALGVAT 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHP 123
           V+E ++LR     A IF+       +   +   ++IP +S +  +     +  +      
Sbjct: 62  VDEALELREAGIAAPIFLFTVADVSEVPQLVRFDIIPFVSDLAYIKQIEREAQNQEKVAM 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+VDTG  RLG   +EAL       N K   +  + +H + +D        +Q+ R  
Sbjct: 122 VHLKVDTGMGRLGCRPEEALSLASFVGNSKNLMMGGLCTHFSLSDISDRAYTLLQINRLN 181

Query: 184 TLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQT 234
            L+   +           A++  I+  P  ++ + RPG+ ++G    +         ++ 
Sbjct: 182 LLVDTLRSQHIPYGLVHAANTGAIIQYPEAYYDMVRPGLGIFGYPPDLIHMGRDRADLRP 241

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V++ E +I LI+    GE VSYG       D+ I V A G+ DGYP +LS          
Sbjct: 242 VLSMETKIGLIKTIKKGESVSYGRTFVAENDTHIGVVAAGFCDGYPRSLSN--------- 292

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---PDIKLDDVALASG 351
              G   IKG   P++G + MD  + D+   L ++  D + + G    +  + D+     
Sbjct: 293 --KGFVTIKGKHYPVIGMVCMDQLIVDLGRDLQVDPDDTVVLLGHGRNEPTMVDLTQRGN 350

Query: 352 TTNYDLLVRIGTRYAKFY 369
               +++ RI  R  K Y
Sbjct: 351 IIVNEVICRIPARVPKVY 368


>gi|149202594|ref|ZP_01879566.1| alanine racemase [Roseovarius sp. TM1035]
 gi|149143876|gb|EDM31910.1| alanine racemase [Roseovarius sp. TM1035]
          Length = 345

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 127/362 (35%), Positives = 181/362 (50%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW +++A+   + TAAVVK +AYGLG  ++AP L  AG + FFV   EEG
Sbjct: 6   LTIDLDAIVANWRALDAM-NTSETAAVVKADAYGLGAARVAPTLARAGARHFFVAVAEEG 64

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR        I+V  G  PG  +++    LIP+I+S+ Q+  +++ +     HP+ +Q
Sbjct: 65  APLRETLGAVPAIYVFSGHMPGDAEMLRAHKLIPMINSLDQMIRHAEAL---PGHPFGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G NRLG+   E       +  +     +LI+SHLACAD+P   +N  QL  FR +  
Sbjct: 122 LDSGMNRLGMEPAEWAALRQIALAQN---PTLIMSHLACADEPDHAMNPQQLATFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  S A++ GILL   YHF L RPGI +YGG            VVT E  +I  R 
Sbjct: 179 GL-DVPRSFANTGGILLDAAYHFDLARPGIGVYGGRPFDAA----HPVVTLEIPVIQCRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
            L GE V Y       R + IA  A GYADG    +                 +      
Sbjct: 234 LLPGETVGYANSFTANRPTRIATVAAGYADGILRAMG-----------PKTSLWADDTPC 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI G+I+MD+   DITD         + + GP   +D +A  +GT  Y++L  +G RY +
Sbjct: 283 PIAGRISMDLICVDITDLGHDPA--SLNLLGPHQTIDTLADNAGTIGYEILTSLGARYTR 340

Query: 368 FY 369
            Y
Sbjct: 341 RY 342


>gi|170740813|ref|YP_001769468.1| alanine racemase [Methylobacterium sp. 4-46]
 gi|226711054|sp|B0UL34|ALR_METS4 RecName: Full=Alanine racemase
 gi|168195087|gb|ACA17034.1| alanine racemase [Methylobacterium sp. 4-46]
          Length = 364

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 186/366 (50%), Gaps = 15/366 (4%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RL I+L AL  NW  +   +  A  AAV+K +AYG G ++  PAL+ AG + FFV  + 
Sbjct: 9   ARLTINLRALAANWRRLAEEAAGAECAAVIKADAYGTGIDRAGPALWRAGCRTFFVAHLS 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           E  + R   P+A I+VL G+ PG      D  L PV+ S  ++  ++    + G   P A
Sbjct: 69  EAERARAALPEAVIYVLNGLPPGSAPAYRDRALRPVLGSREEIEEWAAFCRARGERLPAA 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VDTG NRLGLS  EAL     +  + +   SL++SHL  A+ P   V + Q+  F  +
Sbjct: 129 LHVDTGMNRLGLSPDEALALAGGAALEDVAA-SLLVSHLVSAEVPGDAVTARQVADFARV 187

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            + + G+ ASL +S+G  LG     ++ RPG +LYGG  +    +PM+ VV  +A I+ +
Sbjct: 188 AAAFPGLTASLGNSAGTFLGARARHEMVRPGYALYGGNPRPGGPNPMRPVVRLDATILQV 247

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G    Y  +        +A  ++GYADGYP   SG             +  + G 
Sbjct: 248 RDVPPGATAGYNARWTAPGPRRLATLSLGYADGYPRAGSGR-----------AEAVVAGR 296

Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             P++G I+MD+ + D+TD+       G    + G  + +D+V   +GT  Y++L  +G 
Sbjct: 297 RCPVVGTISMDLVILDVTDAPPEAARRGARATLIGEGLDIDEVGQRAGTIGYEILTNLGR 356

Query: 364 RYAKFY 369
           R  + Y
Sbjct: 357 RSERAY 362


>gi|228474910|ref|ZP_04059639.1| alanine racemase [Staphylococcus hominis SK119]
 gi|314935973|ref|ZP_07843323.1| alanine racemase [Staphylococcus hominis subsp. hominis C80]
 gi|228271142|gb|EEK12522.1| alanine racemase [Staphylococcus hominis SK119]
 gi|313655979|gb|EFS19721.1| alanine racemase [Staphylococcus hominis subsp. hominis C80]
          Length = 381

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 158/376 (42%), Gaps = 26/376 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               L +DL A+  N++    L  +     V+K N YGLG  KIA  L N G Q F V +
Sbjct: 7   RPTYLNVDLDAILYNYNIFKTLQSDKLVIPVIKANGYGLGSVKIAEILENNGAQFFAVAT 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E ++LRL+   A++ VL  I P         ++   + S   L      +     H Y
Sbjct: 67  LDEAIELRLHNINAKLLVLGAISPKDINKAIQYDITLTVPSQFWLERAIHYIEDNSDHVY 126

Query: 125 -ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             +++DTG  RLG+ +L+E     +            + +H A AD+P   +   Q   F
Sbjct: 127 LHVKLDTGMGRLGIKTLEEYQLVINLIKEHPTLIFDGVFTHFANADEPGDSM-KQQYAFF 185

Query: 183 RTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVT 237
             L++  +  +     +S+G LL         R GISLYG              ++    
Sbjct: 186 EELVTKAERPKYIHAQNSAGALLANCKLCNALRLGISLYGYYPSEYVRNEVDVQLKPSAK 245

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
              +++  +    G+ VSYG     T    IAV  IGYADG+   + G            
Sbjct: 246 LMTQVVQTKYLNPGDSVSYGSTFTATEKMKIAVLPIGYADGFLRAMQGFA---------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVALASGTT 353
               +  +   I+G++ MD  +  + D   ++ GD + +   ++     ++ +A+   T 
Sbjct: 296 --VNVNQHQCEIIGRVCMDQMIISVPD--DVKEGDEVILIDNNLNSSQAVEALAIKQNTI 351

Query: 354 NYDLLVRIGTRYAKFY 369
           NY++L  +G R  + Y
Sbjct: 352 NYEVLCNLGRRLPRIY 367


>gi|317177728|dbj|BAJ55517.1| alanine racemase, biosynthetic [Helicobacter pylori F16]
          Length = 377

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 172/381 (45%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKIPILILGYSPNSNASMLIDNDLSAMIFSLEQAEIFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRTLKGLEIEGIFTHLSNADSNIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERIY 376


>gi|325681053|ref|ZP_08160585.1| alanine racemase [Ruminococcus albus 8]
 gi|324107282|gb|EGC01566.1| alanine racemase [Ruminococcus albus 8]
          Length = 374

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 99/375 (26%), Positives = 146/375 (38%), Gaps = 27/375 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSV 65
             +IDL+A++ N      L         VVK   YG     I P L    G + F V  +
Sbjct: 8   WAEIDLSAVEYNVTEYKKLLPAGTELMYVVKAACYGHDDSLIVPFLQEKLGAEYFAVADL 67

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E ++LR       I +L    P    +I   N+I   + +      SK      +    
Sbjct: 68  DEAIRLRGMGISGDILILGYTLPEYAPLIAKHNVIQACTDLSYARELSKNAEG--TVRVH 125

Query: 126 LQVDTGFNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLE 180
             VDTG  R+G+  + +E               L  I +H + AD          ++Q E
Sbjct: 126 GAVDTGMTRIGVHGTAEEQAAELSEIAATPNIALEGIFTHFSSADGTAQADDDYTNMQAE 185

Query: 181 RFRTLISHYK--GI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--Q 233
           RF  +       GI    A + +S+G   G      L R GI +YG      K  P   +
Sbjct: 186 RFFRVRDLLTAGGIELKHAHIKNSAGGAYGFGEGSTLARLGIIMYGLYPDPAKPLPFEPK 245

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T +A +  ++   AG  VSYG      R   +A    GYADGYP  LS         
Sbjct: 246 PVMTWKAVVSQVKWIDAGTAVSYGRTFVSDRRMKLATITAGYADGYPRALSN-------- 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
               G+  I G    I G++ MD  M D+TD   I  GD   +   ++  D +A  +GT 
Sbjct: 298 ---KGEVIIGGKRCRICGRVCMDQFMCDVTDLPDIRSGDEAILMDAEMNADHLAALTGTI 354

Query: 354 NYDLLVRIGTRYAKF 368
            Y++   I  R  + 
Sbjct: 355 GYEITCGISPRVPRV 369


>gi|77361350|ref|YP_340925.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876261|emb|CAI87483.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 330

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 158/343 (46%), Gaps = 21/343 (6%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE- 91
            AV+K NAYG G   IA  L       F V  ++E + LR       I +L G     + 
Sbjct: 1   MAVLKANAYGHGLVTIAQHL--NDADAFAVARIDEALALRAGGLTKPIVLLEGFFDEADL 58

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            I+   N   +I    QL                L+++TG +RLG++ ++  +F +    
Sbjct: 59  PILLANNFQTIIHDENQLAALENAQLEA-PINCWLKINTGMHRLGIAPEQFDEFYNRLQK 117

Query: 152 -KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF 210
                    +++H +CADD  S     Q+  F  L  + +     L++S+GIL  P+ H 
Sbjct: 118 TANANNTVNLMTHFSCADDVDSSKTMQQIALFNRLAENVEQAHC-LSNSAGILAWPSGHG 176

Query: 211 QLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL 267
              RPG+ LYG +   N   K++ ++ V+    ++I +R   A E V Y G+ +  + + 
Sbjct: 177 DWVRPGLMLYGVSPMANTTGKTYQLEPVMRLTTKVIAVRNVAAHEAVGYSGRWQSDKPTQ 236

Query: 268 IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-L 326
           +AV A+GY DGYP                G    I      I+G + MDM   DI ++  
Sbjct: 237 LAVVAMGYGDGYPRHA-----------RAGTPVIINKQRYGIVGSVAMDMITLDIGNNTH 285

Query: 327 SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +I+VGD + ++GP++ ++++A  + T  Y+LL  I  R +  Y
Sbjct: 286 NIKVGDEVTMWGPELPVEEIAQCADTIPYELLCNITPRVSYQY 328


>gi|210135131|ref|YP_002301570.1| alanine racemase [Helicobacter pylori P12]
 gi|226711046|sp|B6JMG2|ALR_HELP2 RecName: Full=Alanine racemase
 gi|210133099|gb|ACJ08090.1| alanine racemase [Helicobacter pylori P12]
          Length = 377

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 173/381 (45%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR + P+  I +L         ++ D +L  ++ S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFPKTPILILGYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTD--KINKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG     ++ +S P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNEMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|291530912|emb|CBK96497.1| alanine racemase [Eubacterium siraeum 70/3]
          Length = 379

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 159/373 (42%), Gaps = 24/373 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    +IDL AL++N++ +  L+      AVVK NAYG   + +   L   GV+ + V++
Sbjct: 6   KRAWAEIDLDALEHNYNEIKKLAKGKDILAVVKANAYGHDDKAVCLKLQELGVKYYGVSN 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           + EG KLR +     I             + +  +     SV      S    S GV  P
Sbjct: 66  LWEGEKLRQHGITGTILTFGYTDEDYFDELLEYGITQTAGSVQYAKQLSDYAVSKGVKLP 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLE 180
             ++V+TG  R+G+  Q+ +    +             +H A AD            Q E
Sbjct: 126 VHIKVNTGMTRVGIDSQQEM---LDIIAMPGLDCKAAYTHFAAADSLDPSDVEYTDRQQE 182

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTA 238
           +    I+  KG+     +S GI+   ++   + R G+ LYG      +     M++V+T 
Sbjct: 183 KLMK-IAKDKGLLIHSQNSGGIIYHGDFGGDIVRAGVILYGHYPNYPLEVPFDMKSVMTV 241

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +  ++   AG  +SYG      ++  +AV  IGYADGY    S             G
Sbjct: 242 KSVVSQLKTIPAGTQISYGRTYTAEKEMTVAVIPIGYADGYFRDFS-----------SKG 290

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNY 355
           K  I G +  ++G++ MD T+ D+++   I+ GD + ++     +  +D  A    T  Y
Sbjct: 291 KMLINGVLCNVVGRVCMDQTIVDVSNVPDIKTGDIVYVYSDKCRETSVDYNASLIDTIGY 350

Query: 356 DLLVRIGTRYAKF 368
           +L   +  R  + 
Sbjct: 351 ELTCAVALRIPRV 363


>gi|240167811|ref|ZP_04746470.1| alanine racemase [Mycobacterium kansasii ATCC 12478]
          Length = 392

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 101/379 (26%), Positives = 169/379 (44%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+++N   +   +G+A+  AVVK + YG G  ++A A   AG  +  V +V
Sbjct: 13  LAEAVVDLGAVEHNVRVLREHAGSAQVMAVVKADGYGHGATRVAQAALAAGAAELGVATV 72

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR     A +                 ++   +SS  Q       +   G +   
Sbjct: 73  DEALALRADGITAPVLAWLHPPGIDFGPALVADVEIAVSSTRQLDELLDAVARTGRTATV 132

Query: 125 ALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           +++VDTG NR G+      E L     +  +   +L  ++SHL  AD P   +N +Q +R
Sbjct: 133 SVKVDTGLNRNGVPPALYPEMLARLRQAAAEHAIRLRGLMSHLVYADAPQQPINDIQAQR 192

Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235
           FR ++S+ +        A L++SS  +  P+    L RPGI++YG +    +    +   
Sbjct: 193 FRDMLSYAREEGVTFEVAHLSNSSATMARPDLTLDLVRPGIAVYGLSPVPERGEMGLVPA 252

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + LI+   AGE VSYG       D+ +A+  IGYADG   +L G          
Sbjct: 253 MTVKCAVALIKSVPAGEGVSYGHTWIAPHDTTVALLPIGYADGVFRSLGGRL-------- 304

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350
              +  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A   
Sbjct: 305 ---EVLINGRRRPGVGRICMDQFVVDLGPGPVDVAEGDEAILFGPGARGEPTAQDWADLV 361

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+++     R ++ Y
Sbjct: 362 GTIHYEVVTSPRGRISRTY 380


>gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN]
 gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN]
          Length = 826

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 154/371 (41%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + L    +   ++K +AYG G  +IA  L    V    V   +E
Sbjct: 467 LEVNLNAVVDNLNWYRSFLKPETKLVCMIKADAYGAGAVEIAKTLEEHRVDYLAVAVADE 526

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           G  LR    ++ I ++        K +FD  L P I S   L    K         +P  
Sbjct: 527 GATLRRNGIKSNIMIMNPEM-SSFKTLFDYELEPEIYSFRLLDALIKAAEKEGITGYPVH 585

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           ++ DTG +RLG + + +         ++       + SH   +D+      ++ Q + F 
Sbjct: 586 IKFDTGMHRLGFNPRTDIAQLIEKLRHQNALIPRSVFSHFVGSDNNDFDSFSAEQFKLFD 645

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R G+ LYG   + N+      V T 
Sbjct: 646 EGSKQLQSAFSHRILRHIDNSAGIEHFPERQLDMCRLGLGLYGINPRNNEIINN--VSTL 703

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R    GE V Y  +  + +DS+IA   IGYADG    L   +           
Sbjct: 704 KTTILQMRNVPKGETVGYSRRGVIEKDSVIAAIPIGYADGLNRKLGNRNC---------- 753

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ + D+T     + GD ++IFG ++ +  ++    T  Y++L
Sbjct: 754 YCLVNGQKADYVGNICMDVALIDVTGI-DCKEGDSVEIFGDNLPVTILSNVLETIPYEVL 812

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 813 TTVSNRVKRVY 823


>gi|109900323|ref|YP_663578.1| alanine racemase [Pseudoalteromonas atlantica T6c]
 gi|122971491|sp|Q15NL4|ALR_PSEA6 RecName: Full=Alanine racemase
 gi|109702604|gb|ABG42524.1| alanine racemase [Pseudoalteromonas atlantica T6c]
          Length = 375

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 177/383 (46%), Gaps = 31/383 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA----------RTAAVVKDNAYGLGCEKIAPALYN 54
             + + +DL A++ N+   NAL  NA           T AV+K +AYG G    A AL N
Sbjct: 3   RPISITVDLDAIRQNFAYANALGVNALESSINDRQSNTLAVIKADAYGHGAVATARAL-N 61

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYS 113
                  V+S+EE V LR +  +  I +L G   P +  ++ + NL  VI +  Q+    
Sbjct: 62  GQAALLAVSSIEEAVSLRQHHIKTPILLLEGCFCPSELSVVNELNLQIVIHNQKQIEDLL 121

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             +         L+VDTG +RLG+ + +AL       + K     ++++H A +D P   
Sbjct: 122 AQV-LTKPIKVWLKVDTGMHRLGIPVSDALKAYTQLASSKNVCSVMLMTHFATSDHPDHP 180

Query: 174 VNSVQLERFRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           +   Q++  + L             SLA+S+ +L  P       RPGI LYG +      
Sbjct: 181 LLLSQIQSIQKLAEKVSAEPSYAGCSLANSAALLATPKSISTWNRPGIMLYGISPFNQSD 240

Query: 230 H---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
               P+   +T  +++I +R+   GE V YG      R S+IA  A GY DGYP      
Sbjct: 241 INVLPLIPAMTFSSKVIALRRVATGESVGYGAIWTAKRPSIIATVAAGYGDGYPR----- 295

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                 +   G    + G + P+ G+++MDM   D+T    I  G  ++++G +I ++DV
Sbjct: 296 ------TAKSGTPVMVNGQIAPLAGRVSMDMLCVDVTQLTDISEGSPVELWGKNIPVNDV 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  + T  Y+L+ R+ TR  + +
Sbjct: 350 AAWADTLGYELVTRMPTRAKRVF 372


>gi|291003863|ref|ZP_06561836.1| alanine racemase [Saccharopolyspora erythraea NRRL 2338]
          Length = 378

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 164/373 (43%), Gaps = 26/373 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+ID+ A+++N   + A +  ART  +VK + YG G   +A A   AG     V ++ E 
Sbjct: 11  LRIDVDAIRHNVGVLAARAAGARTMVIVKSDGYGHGAVTVARAALEAGAGQIGVAALGEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQ 127
           V LR     A +                  +    SSV  L   +      G+     L+
Sbjct: 71  VALREAGITAPLMCWLYSRGDDFAPALRHGVELSASSVRGLREIAATAAELGLVARLHLK 130

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +DTG  R G    E  +    +   +     ++  + SHLACAD+        Q  RFR 
Sbjct: 131 IDTGLCRSGCPEAEWPNLVDEAAKAEADGHVEVVAVWSHLACADELGHPSIDNQALRFRR 190

Query: 185 LISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-NKSHPMQTVVTAE 239
                +    G    LA+S+ +L  P+ HF++ RPGI++YG      +  H ++  +T  
Sbjct: 191 AYERARTAGLGPIRHLANSAAVLTRPDLHFEMVRPGIAVYGLDPVPQDGDHGLRPAMTFR 250

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + + L ++  AGE VSYG      R   +A+  +GYADG P TLSG  S           
Sbjct: 251 SSVSLTKRVAAGESVSYGHTWTADRPVNLALVPVGYADGVPRTLSGRMS----------- 299

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
            ++ G   P++G++ MD  +  + D   +  GD + +FGP    +    + A   GT +Y
Sbjct: 300 VWLAGRRRPVVGRVCMDQLVV-LCDDDVVREGDEVILFGPGDRGEPTAAEWADELGTIHY 358

Query: 356 DLLVRI-GTRYAK 367
           +++  +   R  +
Sbjct: 359 EIVTGMYRPRVTR 371


>gi|260551290|ref|ZP_05825491.1| alanine racemase 2 PLP-binding [Acinetobacter sp. RUH2624]
 gi|260405604|gb|EEW99095.1| alanine racemase 2 PLP-binding [Acinetobacter sp. RUH2624]
          Length = 367

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 147/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHHQALQNNLVVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R       I +L G+  P          L   + S  Q+ +  K         
Sbjct: 61  LDEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTVHSEAQIEWVEKH-PYPAQFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q  +       N         ++H + AD           Q+  
Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLANVSKITHMTHFSDADGDRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  ++    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEEIVKDLPG-ERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++     E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIISVQHLEPNESVGYGSNFVTEQPMTIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+I+MDM   D+T   S +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTIGRISMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTARV 361


>gi|240140752|ref|YP_002965232.1| putative alanine racemase (alr-like) [Methylobacterium extorquens
           AM1]
 gi|240010729|gb|ACS41955.1| putative alanine racemase (alr-like) [Methylobacterium extorquens
           AM1]
          Length = 342

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/352 (33%), Positives = 182/352 (51%), Gaps = 14/352 (3%)

Query: 19  NWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78
           NW ++ A +  A   AVVK +AYG G   +APAL+ AG + FFV  + EG+  R   P+A
Sbjct: 4   NWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKILPEA 63

Query: 79  RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS 138
            ++VL G+ PG  +      L PV+    +L  +++ M      P AL VDTG NRLGL 
Sbjct: 64  ALYVLNGLPPGHAEAFRAHRLRPVLGDAQELAEWAEAMQGA--GPAALHVDTGMNRLGLC 121

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198
           + EAL    +    + G + L++SHL  A+ P   +N+ Q   F  + + +  + ASLA+
Sbjct: 122 VAEALALAGDPVIARAG-IDLVMSHLVSAELPDDPLNARQAADFARVRAAFPQMRASLAN 180

Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           SSG  L  +    L RPG +L+GG     + + M+ VV  EA I+ +R   AG    Y  
Sbjct: 181 SSGTCLANDARHDLLRPGYALFGGNPDPGQPNSMRPVVRLEATILQVRNVEAGATCGYNA 240

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
           + +      +A  ++GYADGYP + S             G   + G   PI+G I+MD+ 
Sbjct: 241 RWQAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGVPCPIVGLISMDLI 289

Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           + D+TD+     G    + G  + +D V  A+GT  Y++L  +G+RY + Y 
Sbjct: 290 ILDVTDATQARRGGTATLIGDSLDIDTVGQAAGTIGYEILTSLGSRYVRDYV 341


>gi|123969267|ref|YP_001010125.1| alanine racemase [Prochlorococcus marinus str. AS9601]
 gi|123199377|gb|ABM71018.1| putative Alanine racemase [Prochlorococcus marinus str. AS9601]
          Length = 399

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 183/382 (47%), Gaps = 29/382 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +++   AL+ N  ++   LS N +  AVVK + YG   + ++      G     V 
Sbjct: 26  QRAWIEVRGKALETNVRNLRSKLSKNCQFMAVVKADGYGHDAKVVSEYAIRGGASQLGVA 85

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MSCGVS 121
           +++EGVKLR +  +  I +L  ++  ++ II F  +L+P ISS+ +    + +    G+ 
Sbjct: 86  TLKEGVKLRSFGVKKPILILGNLYTKRDLIISFKNDLMPTISSIRECLICNNIGKQFGLK 145

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSV 177
               L+VDTG +RLG      +       + +   +  I SHL+ AD+ +      +  +
Sbjct: 146 FSLHLKVDTGMSRLGFEYSRFIQNFEKIKSFENILIEGIYSHLSSADEDNALDPKSITQL 205

Query: 178 QLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230
           Q  +F  L+          I+  LA+S+ +LL  ++HF + R G+S+YG +   KI+K+ 
Sbjct: 206 QRLKFNELLKQINLDRNNEIKIHLANSAAMLLNKDFHFNMVRVGLSMYGYSPLTKIDKNL 265

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +  + ++  IR    G  VSYGG+    R + +AV +IGYADG P  LSG     
Sbjct: 266 SLEPALFLKVKVAFIRTIEPGVNVSYGGKFVSCRKTKLAVLSIGYADGVPRNLSGKI--- 322

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   K   K  + P +G ITMD  M DIT S  I+VG  + + G D    I   D 
Sbjct: 323 --------KVIYKNKLYPQVGSITMDQMMVDITGSNEIKVGSTMILLGSDGDKTITPIDW 374

Query: 347 ALASGTTNYDLLVRIGTRYAKF 368
           A  S T  +++L     R  + 
Sbjct: 375 AKESDTIPWEILCSFKNRLPRV 396


>gi|319405446|emb|CBI79065.1| Alanine racemase [Bartonella sp. AR 15-3]
          Length = 373

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 117/354 (33%), Positives = 189/354 (53%), Gaps = 15/354 (4%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ-A 78
           + ++         +AVVK +AYGLG EK+APALY AG + FF+  ++E ++L+   PQ  
Sbjct: 30  YKTLVQRVAPIECSAVVKADAYGLGAEKVAPALYQAGCRTFFIAHLKEALQLKAILPQNI 89

Query: 79  RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGL 137
            + +L G+ P  E++I    ++PV++S  ++  +       G   P  +Q+DT  NRLGL
Sbjct: 90  TLVLLNGLPPNAEELITKAGIVPVLNSRHEIENWQMHCQKNGKKFPAIIQIDTNMNRLGL 149

Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
             +E      N    +   +  IISHLA  DD +   N  Q    +T ++     +ASLA
Sbjct: 150 DQEELKWLIQNPTLFERIDIKYIISHLANGDDVTHASNCAQKNAMKTALAQLPACKASLA 209

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
           +S GI LGP+++F L RPGI+LYG          +++V+  +A++I  R   AG  V YG
Sbjct: 210 NSGGIFLGPDFYFDLVRPGIALYGIDPHKKHPTSLKSVLKLKAQVIQSRYTEAGSPVGYG 269

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317
           G     + S++   AIGYADG+   LS             G  + K + +PI+G+I+MD 
Sbjct: 270 GSFITQKPSILTTIAIGYADGWLRNLSN-----------KGFVYFKKHKLPIIGQISMDS 318

Query: 318 TMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              D T+      + GD++++ G    +++VA  +GT  Y++L  +G+RY + Y
Sbjct: 319 ITVDATNLKHEKPKRGDWVELIGRHQTIENVAADAGTIPYEILTSLGSRYKRIY 372


>gi|184156444|ref|YP_001844783.1| alanine racemase [Acinetobacter baumannii ACICU]
 gi|260557641|ref|ZP_05829855.1| alanine racemase [Acinetobacter baumannii ATCC 19606]
 gi|183208038|gb|ACC55436.1| Alanine racemase [Acinetobacter baumannii ACICU]
 gi|260408814|gb|EEX02118.1| alanine racemase [Acinetobacter baumannii ATCC 19606]
          Length = 367

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 146/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  ++R       I +L GI  P          L   I S  Q+ +  +         
Sbjct: 61  LEEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q  +       N         + H + AD           Q+  
Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  ++    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEEIVKDLPG-ERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++     E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIISVQHLEPNESVGYGSNFVAEQPITIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+++MDM   D+T   S +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLSIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTARV 361


>gi|221069574|ref|ZP_03545679.1| alanine racemase [Comamonas testosteroni KF-1]
 gi|220714597|gb|EED69965.1| alanine racemase [Comamonas testosteroni KF-1]
          Length = 368

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 155/377 (41%), Gaps = 30/377 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             + + I   A+++N   +     +A+  +V+K NAYG G E +   L       F +  
Sbjct: 3   RPITVTIHPEAVRHNLERVRQAVPDAKLWSVIKANAYGHGIENVFEGLRA--TDGFAMLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R    +  I +L G+      +I     +   +    Q+ + +      V H 
Sbjct: 61  LDEAQRVRQLGWRGPILLLEGVFELRDLEICSRLGIWHAVHCDEQIDWLAAH-KTQVGHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + +                    ++H + AD         QL+ F 
Sbjct: 120 VFLKMNSGMNRLGFTPERFRAAYARLNALPQVDEISFMTHFSDADVAHGI--DHQLKVFH 177

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKI----NKSHPMQTVV 236
                  G E S+++S+  LL     N      RPGI LYG +            ++  +
Sbjct: 178 ETTLDLPG-ERSISNSAATLLYGDESNVRCDWVRPGIVLYGSSPDFPAHDAAHWGLEPTM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  +RII I++   G+ V YG + +      + V A GYADGYP                
Sbjct: 237 TLSSRIIGIQELQPGDTVGYGSRFQCDAPLRLGVVACGYADGYPR-----------VCPT 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    ++G     LG+++MDM   D++      +G  + ++G       + +D+VA A+G
Sbjct: 286 GTPVLVEGVRTRTLGRVSMDMMAVDLSPVPKARLGSEVTLWGRASNGAVLPIDEVAAAAG 345

Query: 352 TTNYDLLVRIGTRYAKF 368
           T  Y+L+  +  R  K 
Sbjct: 346 TLGYELMCAVAPRVPKV 362


>gi|296130437|ref|YP_003637687.1| alanine racemase [Cellulomonas flavigena DSM 20109]
 gi|296022252|gb|ADG75488.1| alanine racemase [Cellulomonas flavigena DSM 20109]
          Length = 410

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 98/383 (25%), Positives = 163/383 (42%), Gaps = 24/383 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R  +DL A++ N  ++ A +  A+  AVVK +AYG G    A A    G        V
Sbjct: 18  PARAVVDLGAVRGNVRALAAHAPTAQVMAVVKADAYGHGLVPSALAALEGGATWLGTAQV 77

Query: 66  EEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHP 123
            E + LR      ARI           +   + ++   ++S        +     G +  
Sbjct: 78  PEALHLRRAGVTGARILTWLYAPGAPLREAVEADVDLSVASRWALDDVVAAAREAGRTAR 137

Query: 124 YALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L+VDTG  R GL   +  +       +  + + ++  + SHLA AD P   V + Q  
Sbjct: 138 VHLKVDTGLGRNGLVPAQLPEVLTAALAAEAEGVVRVVGVWSHLAFADAPDHAVVAQQAG 197

Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ-- 233
            F   ++  +          LA+S+  L  P  H+ L RPGI++YG +       P +  
Sbjct: 198 VFAEAVAAVEAAGARLEVRHLANSAATLTSPALHWDLVRPGIAVYGLSPVPQLGGPERFG 257

Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
               +T EA++  ++   AG  VSYG +  +  D+++ V  +GYADG P   SG      
Sbjct: 258 LVPAMTFEAQLATVKPVPAGSGVSYGHEYVVPHDTVLGVVPVGYADGVPRHASGSAER-- 315

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                GG   + G  + + G++ MD  + D+    +   GD + ++G          D A
Sbjct: 316 ----WGGPVQVGGRRLGVAGRVCMDQVVLDLGPGATESAGDRVVLWGDGRDGGPTAQDWA 371

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
             +GT +Y+L+ R+G R  + Y 
Sbjct: 372 DVAGTISYELVTRLGARVPRTYV 394


>gi|254852379|ref|ZP_05241727.1| alanine racemase [Listeria monocytogenes FSL R2-503]
 gi|258605686|gb|EEW18294.1| alanine racemase [Listeria monocytogenes FSL R2-503]
          Length = 336

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 139/350 (39%), Gaps = 30/350 (8%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR-IFVLYGIHPGQ 90
             AVVK NAYG G  ++A     AG + F V  ++E + LR    Q   I VL       
Sbjct: 3   LWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDEALALREAGFQDDFILVLGATRKED 62

Query: 91  EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNS 149
             +    ++   +     L       +        L+VD+G  RLG+ +  EA       
Sbjct: 63  ANLAAKNHISLTVFREDWLEDL----TLEAPLRIHLKVDSGMGRLGIRTTDEARRIETTI 118

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILLGPN 207
                 QL  I +H A AD   +     QL +F+T+++  K        A+S+  LL P 
Sbjct: 119 AKDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILTSLKNRPTYVHTANSAASLLQPQ 178

Query: 208 YHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
             F   R GIS+YG T            ++  +     ++ +++   G+ VSYG     T
Sbjct: 179 IGFDAIRFGISMYGLTPSTEIKTSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTAT 238

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
               +A   IGYADG     SG                + G + PI+G++ MD T+  + 
Sbjct: 239 EREWVATLPIGYADGLIRHYSGF------------HVLVDGELAPIIGRVCMDQTIIKLP 286

Query: 324 DSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
                + G  + I G D    I  DD A    T NY++   +  R  + Y
Sbjct: 287 REF--QTGSKVTIIGTDHGNTITADDAAHYLDTINYEVTCLLNERIPRKY 334


>gi|320354045|ref|YP_004195384.1| alanine racemase [Desulfobulbus propionicus DSM 2032]
 gi|320122547|gb|ADW18093.1| alanine racemase [Desulfobulbus propionicus DSM 2032]
          Length = 374

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 155/372 (41%), Gaps = 27/372 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+++  +AL +N+      +  A    +VK + YG G    A      G   F V    E
Sbjct: 6   RVEVSRSALIHNFGICRQWADGAAIMPLVKADGYGHGMIDCARVFAEQGAAAFGVAEAIE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126
           GV+LR       I VL G+ P     + + +L PV+     +   S+L           +
Sbjct: 66  GVRLRAAGITQPILVLAGVIPQTLPTMVEADLTPVVVDAAIVPELSRLAGLQRREIGVHV 125

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++D G  R G+  ++ +D           +L  +++H  C+D+P S  ++  L  F    
Sbjct: 126 KLDAGMGRQGVLPEDFVDLVRTVRGAPHLRLDGVMAHFPCSDEPQSANSAQVLRTFTATT 185

Query: 187 SHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK------INKSHPMQTV 235
           +        G    LA+S G+         + RPGI+LYG                ++  
Sbjct: 186 ASLAALTGGGCCLHLANSGGLFYVAGARLDMVRPGIALYGYYPDGETGRAAAAPPLLRPA 245

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +    RII +R+  AG  + Y      +R S IAV  +GY DGY   LS           
Sbjct: 246 MRFATRIIQVRRVPAGSGLGYSHLFTTSRPSTIAVLPVGYDDGYLRKLSNR--------- 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              +  I G  VP +G+I+M++T+ D+T    ++VGD   + G      I  D++A    
Sbjct: 297 --AQVLIHGRRVPTVGRISMNLTLVDVTGIDGVQVGDEAVLLGRQGEETITADEIAAWME 354

Query: 352 TTNYDLLVRIGT 363
           T +Y++L   G 
Sbjct: 355 TISYEVLCLFGK 366


>gi|196232506|ref|ZP_03131358.1| alanine racemase [Chthoniobacter flavus Ellin428]
 gi|196223268|gb|EDY17786.1| alanine racemase [Chthoniobacter flavus Ellin428]
          Length = 335

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 159/346 (45%), Gaps = 22/346 (6%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
            AVVK NAYG G   +A AL     + F V +V E  +LR + P A IF+L    P +  
Sbjct: 1   MAVVKANAYGHGLGPVAKALVGH-AEMFGVATVGEAEELRSHVPDAPIFILGPALPDERL 59

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
            +     IP IS+V +   Y+ L +     P  L +DTG  R+G+   +A+       + 
Sbjct: 60  PVVTGCFIPAISTVEEARAYAAL-TGAKPLPVHLLIDTGMGRVGILQDDAVATAREILSL 118

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPN 207
           +   ++ + SHL  AD+        QL +F  ++   + +        + +S+GI+  P 
Sbjct: 119 RGLTVTGLASHLPVADE-DDAFTREQLAQFHQVVGQLRSLGISQPVVHVENSAGIISYPT 177

Query: 208 YHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL 267
               + R G+ +YG +        ++ V+T + R+ L+R+  AG  +SYG      R   
Sbjct: 178 QAGDMVRAGLMIYGSSPVPEFQPKLRAVMTWKTRVTLVREMPAGHGISYGRTFITPRPMR 237

Query: 268 IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327
           IA   +GYADGY   LS   ++            I G   P+LG++TMD  + D++    
Sbjct: 238 IATLGVGYADGYQRHLSNRSAD----------VLIGGQRCPVLGRVTMDQILADVSALPQ 287

Query: 328 IEVGDYIQIF----GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  GD   +     G +I   ++A  SGT  +++   +G R  + Y
Sbjct: 288 VTAGDEAVLIGSQGGEEISAAELAQKSGTIPWEIFTGVGRRVERAY 333


>gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
 gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
          Length = 822

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 96/354 (27%), Positives = 156/354 (44%), Gaps = 21/354 (5%)

Query: 25  ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLY 84
            L  + +  A+VK  +YG G  ++A  L   GV    V  ++EG+ LR       I VL 
Sbjct: 478 KLGPDVKIMAMVKAFSYGSGSFEVANLLQFNGVDYLAVAYIDEGIALRNAGITLPIMVLN 537

Query: 85  GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYALQVDTGFNRLGLSLQEA 142
                 +K + +  L P I S      + K        ++P  +++D+G +RLG    E 
Sbjct: 538 PEASAFDK-LVEFTLQPEIYSFTLFDEFVKFAQLKNIFNYPIHIKIDSGMHRLGFEDFEI 596

Query: 143 LDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRTLISHYK-----GIEASL 196
                     +   +  I SHLA +D +        Q+  F       +      +   +
Sbjct: 597 ETLCDLLEQNQYVHIQSIFSHLAGSDAEMHDEFTLKQIMVFEKAYHQIEKVLNYKVMRHM 656

Query: 197 ASSSGILLGPNYHFQLTRPGISLYGGTDKI-NKSHPMQTVVTAEARIILIRKALAGELVS 255
           A++S I   P   F + R GI LYG    I N+++ +Q V T +  +  ++K  AGE + 
Sbjct: 657 ANTSAITRWPVAQFDMVRLGIGLYGIDSAIKNEANQLQPVATLKTSVSQVKKIKAGETIG 716

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           Y     L  D  IA   IGYADGY                  GK  IKG +VP +G ++M
Sbjct: 717 YNRNGSLLADGKIATVRIGYADGYLRAFGNGV----------GKMLIKGVLVPTVGNVSM 766

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           DM M D++ ++ ++ GD + +F  + K+++VA    T  Y++L  +  R  + Y
Sbjct: 767 DMCMLDVS-AVEVKEGDEVVVFNEEYKIEEVAKQINTIPYEILTNVSQRVKRVY 819


>gi|167750416|ref|ZP_02422543.1| hypothetical protein EUBSIR_01390 [Eubacterium siraeum DSM 15702]
 gi|167656567|gb|EDS00697.1| hypothetical protein EUBSIR_01390 [Eubacterium siraeum DSM 15702]
          Length = 379

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 159/373 (42%), Gaps = 24/373 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +    +IDL AL++N++ +  L+      AVVK NAYG   + +   L   GV+ + V++
Sbjct: 6   KRAWAEIDLDALEHNYNEIKKLAKGKDILAVVKANAYGHDDKAVCLKLQELGVKYYGVSN 65

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           + EG KLR +     I             + +  +     SV      S    S GV  P
Sbjct: 66  LWEGEKLRCHGITGTILTFGYTDEDYFDELLEYGITQTAGSVQYAKQLSDYAVSKGVKLP 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLE 180
             ++V+TG  R+G+  Q+ +    +             +H A AD            Q E
Sbjct: 126 VHIKVNTGMTRVGIDSQQEM---LDILAMPGLDCKAAYTHFAAADSLDPSDVEYTDRQQE 182

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTA 238
           +    I+  KG+     +S GI+   ++   + R G+ LYG      +     M++V+T 
Sbjct: 183 KLMK-IAKDKGLLIHSQNSGGIIYHGDFGGDIVRAGVILYGHYPNYPLEVPFDMKSVMTV 241

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +  ++   AG  +SYG      ++  +AV  IGYADGY    S             G
Sbjct: 242 KSVVSQLKTIPAGTQISYGRTYTAEKEMTVAVIPIGYADGYFRDFS-----------SKG 290

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNY 355
           K  I G +  ++G++ MD T+ D+++   I+ GD + ++     +  +D  A    T  Y
Sbjct: 291 KMLINGVLCNVVGRVCMDQTIVDVSNVPDIKTGDIVYVYSDKCRETSVDYNASLIDTIGY 350

Query: 356 DLLVRIGTRYAKF 368
           +L   +  R  + 
Sbjct: 351 ELTCAVALRIPRV 363


>gi|332673780|gb|AEE70597.1| alanine racemase [Helicobacter pylori 83]
          Length = 377

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 94/381 (24%), Positives = 173/381 (45%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + +S P   
Sbjct: 188 LEQLLEQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSSGMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDD---VAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG    K +D   +A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASGIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|311111926|ref|YP_003983148.1| alanine racemase [Rothia dentocariosa ATCC 17931]
 gi|310943420|gb|ADP39714.1| alanine racemase [Rothia dentocariosa ATCC 17931]
          Length = 437

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 157/387 (40%), Gaps = 28/387 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL AL++N   +  + G  +  AVVK +AYG G   +A ++  AG     V  V E 
Sbjct: 22  AIIDLNALEHNTRVLKDMIGERKLIAVVKADAYGHGAYPVARSVLEAGADILGVVHVTEA 81

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR     A I               + ++I   S                     L+V
Sbjct: 82  LELRSEGITAPIIAWLHTPQTDFDEALEADIILGASGWDLEAIAEAANRTKKRARVHLKV 141

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G + ++       +   +   L ++  I SHLA AD+P     + Q+ R    
Sbjct: 142 DTGLGRNGSTFEDWPALVARALELEAAGLVRIEGIFSHLAVADEPERPETARQITRLNEF 201

Query: 186 I-----SHYKGIEASLASSSGILLGPNYHF--------QLTRPGISLYGGTDKIN---KS 229
           +     +        LA+S G + G +  +           R GI+LYG +       K 
Sbjct: 202 VTVARSAGLTPELVHLANSPGTITGASPLYNTNEAVLADAVRCGIALYGLSPLAGVSSKD 261

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T    +  +++  AG+ VSYG +    + + +A+  +GYADG P    G    
Sbjct: 262 LNLRPVMTLGTHVCNVKEVPAGQGVSYGLRYSTDKPTTLALIPLGYADGVPRIAEGAPVR 321

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV-----GDYIQIF--GPDIK 342
             P         ++     ++G+I MD  + D+ +    +      G    +F  G +  
Sbjct: 322 IYPRADAANP--VEPRTYRVVGRIAMDQLVVDLEEPGLADPARGILGGSAVLFGSGDNPP 379

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++ A A+ T NY+++ RI  R  + Y
Sbjct: 380 VEEWAAAAQTINYEIVTRISPRVIRIY 406


>gi|305665877|ref|YP_003862164.1| alanine racemase [Maribacter sp. HTCC2170]
 gi|88710652|gb|EAR02884.1| alanine racemase [Maribacter sp. HTCC2170]
          Length = 380

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 100/378 (26%), Positives = 160/378 (42%), Gaps = 21/378 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M       L+IDL  L++N++ +   L+ + +  AVVK  AYG    KIA  L   GV  
Sbjct: 13  MAKASETVLEIDLNNLEHNYNYLRSKLNSDTKFLAVVKAYAYGSDAVKIALKLEAIGVDY 72

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSC 118
           F V  V EGV LR+   +  I VL+      +K+I +  L P + S      F       
Sbjct: 73  FAVAYVNEGVALRMGGVKKSILVLHPQSVNFDKLI-EHCLEPSLYSPKILREFLEATKRN 131

Query: 119 G-VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNS 176
           G   +P  ++ +TG NRLG    +          ++  +++ I SHLA  +D        
Sbjct: 132 GQKDYPVHIKFNTGLNRLGFWENDVDYIMDQLKERRDIRITSIFSHLAATEDSTEKQFTL 191

Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q++ F  ++S ++          + ++SGI+  P  +F + R GI LYG  +       
Sbjct: 192 KQIDTFTKIVSDFEEKLGYSPLKHILNTSGIINYPEANFDMVRSGIGLYGFANDEEIDSQ 251

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ + T +  I  I K    E V Y          + A   +G+ADG             
Sbjct: 252 LKPIATLKTIISQIHKIEPNESVGYNRAYTSEGYRVTATLPLGHADGIGRQYG------- 304

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                     + G + PI+G + MDM M DIT     + GD + IFG +      A  + 
Sbjct: 305 ---KGKTFVSVNGTLAPIIGNVCMDMIMVDITGI-DCKEGDEVIIFGGNPTAHSFAATAN 360

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y+L+  I  R  + +
Sbjct: 361 TISYELITGISQRIKRVF 378


>gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310]
 gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310]
          Length = 824

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   + L  + +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 465 LEVNLNAVVDNLNHFRSFLKQSTKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     A I V+        K +FD +L P + S   L    K         +P  
Sbjct: 525 GVTLRKNGITANIMVMNPEM-SSFKTLFDYDLEPEVYSFRLLEALVKAAEKEGITDYPVH 583

Query: 126 LQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFR 183
           +++DTG +RLG      ++       ++       + SH      D     ++ Q   F 
Sbjct: 584 IKLDTGMHRLGFDPNNDMERLIERLKHQDAIIPRSVFSHFVGSDSDDFDDFSARQFALFD 643

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R G+ LYG   + N+      V T 
Sbjct: 644 MASKQLQAAFQHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGIDPRNNQVINH--VSTL 701

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R   AG+ V Y  + K+  DS+IA   IGYADG    L              G
Sbjct: 702 KTTILQMRMVKAGDTVGYSRKGKIEHDSMIAAIPIGYADGLNRRLGNRH----------G 751

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 752 YCLVNGQRAYYVGNICMDVAMIDVTGI-DCKEGDQVEIFGDHLPVTVLSDTLETIPYEVL 810

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 811 TGVSNRVKRVY 821


>gi|225020515|ref|ZP_03709707.1| hypothetical protein CORMATOL_00522 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946904|gb|EEG28113.1| hypothetical protein CORMATOL_00522 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 378

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 85/383 (22%), Positives = 156/383 (40%), Gaps = 25/383 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M     L   IDL A+  N   +  L   A+   VVK + Y  G   +A  +   G    
Sbjct: 1   MVVVNLLETVIDLDAIATNTRILKNLVQPAQLMCVVKADGYNHGAIPVARTVLANGADQL 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V ++ E ++LR  +  A I               D N+   + S+       K  +   
Sbjct: 61  GVATLAEALELREASITAPILCWIWSPEQDFAAALDANIHLAVVSMAHAQAIVKYAAGKP 120

Query: 121 SHPY--ALQVDTGFNRLGLSLQEALDFTHNSFNK----KLGQLSLIISHLACADDPSSHV 174
                  +++DTG +R G+   +         +        +++ ++SHLACAD+P +  
Sbjct: 121 EKLVQTTIKIDTGLHRSGVDESQWEAVFTLLKDAGTATGNIEVTGVMSHLACADEPGNPA 180

Query: 175 NSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINK 228
           N  Q   F   I+  + +        L++S  +L  P+++ ++ RPG+++YG +      
Sbjct: 181 NDTQAAAFNRAIALGRQLGLELSVNHLSNSPAVLTRPDFYHEMVRPGLAVYGYSPLADGN 240

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
            + +Q  ++   ++ +++    GE  SY    +  +   +AV   GYADG P        
Sbjct: 241 DYGLQPAMSWVGKVTVVKPIEPGEGTSYNLTWRAAKPGYLAVIPAGYADGLPRRAQNHV- 299

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDV 346
                     +  I G+  P +G+I MD  + D+ D+  ++  GD   IFGP  +   ++
Sbjct: 300 ----------EVTIGGHRYPQVGRICMDQFVIDLGDNPHNVRPGDEAIIFGPGGMSATEL 349

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A      NY ++     R  + Y
Sbjct: 350 ASRIQDINYAVICAPTGRTVRRY 372


>gi|288919701|ref|ZP_06414028.1| alanine racemase [Frankia sp. EUN1f]
 gi|288348890|gb|EFC83140.1| alanine racemase [Frankia sp. EUN1f]
          Length = 379

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 100/389 (25%), Positives = 163/389 (41%), Gaps = 31/389 (7%)

Query: 1   MHSNEFLRL--KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M  +   R    IDL A++++  ++   + NA T AVVK + YG G    A A  +AG  
Sbjct: 1   MSQSHLPRAYAAIDLDAVRDSVAALVVRARNATTMAVVKADGYGHGMVPCARAALDAGAG 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMS 117
                 +EE + LR     A IF        +       ++    S +       +    
Sbjct: 61  WLGTAFLEEALSLRAAGINAPIFSWLAAPGERLAAGLAADIDLSASATWALAELAAAARQ 120

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHV 174
            G +    L+VDTG  R G + ++  +    +   +   L  +  + SH A ADDP    
Sbjct: 121 VGRAARVHLKVDTGLGRAGATAEDWPNLCDTAAALEGEGLLDVVGVWSHFAFADDPGHPT 180

Query: 175 NSVQLERFRTL--ISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              Q+ RF     ++   G+      LA+S+  L+ P  HF + RPG+S+YG +      
Sbjct: 181 VQSQIGRFGDAMDVARKAGLNPQIRHLANSAATLITPEAHFDMVRPGVSVYGLSPGPEVG 240

Query: 230 HPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            P     +  +T  A   L+++   G  VSY  +     ++ +AV  +GYADG P   + 
Sbjct: 241 PPSAFGLRPAMTLRATTALVKRVPEGTGVSYAHRYTTRSETNLAVIPLGYADGIPRAATN 300

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DI 341
                        +  + G    I G + MD  + D+     +  GD + +FGP    + 
Sbjct: 301 T-----------AEVLLGGRRRRIAGTVCMDQFVVDVG-VDPVAAGDDVVLFGPGHHGEP 348

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370
             DD A   GT NY+++ R+G R  + YT
Sbjct: 349 TSDDWARVLGTINYEIVTRVGARVPRVYT 377


>gi|313771042|gb|EFS37008.1| alanine racemase [Propionibacterium acnes HL074PA1]
          Length = 375

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 149/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V +  E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATGAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I  L    P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGITLPILKLPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG  +  +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTRTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|317012750|gb|ADU83358.1| alanine racemase [Helicobacter pylori Lithuania75]
          Length = 377

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 173/381 (45%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASETFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR + P+  I +L         ++ D +L  ++ S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFPKTPILILGYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRVLKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTD--KINKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG     ++ +S P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIAYETISTLSKRLERVY 376


>gi|311744760|ref|ZP_07718556.1| alanine racemase [Aeromicrobium marinum DSM 15272]
 gi|311311877|gb|EFQ81798.1| alanine racemase [Aeromicrobium marinum DSM 15272]
          Length = 375

 Score =  345 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 102/377 (27%), Positives = 162/377 (42%), Gaps = 29/377 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
               +DL A + N   +  L+  +   AVVK +AYG G  +I  A   AG     V +VE
Sbjct: 10  AEAHVDLDAYRENLRLLGDLAPASALMAVVKADAYGHGMTEIGRAARQAGADWLGVATVE 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E + LR       +                 ++    SSV Q     ++++ G      L
Sbjct: 70  EALALRSGGDDGPVLCWLASPGASYAAAVAADVEVTASSVGQ---LEEIVAAGGRPRVQL 126

Query: 127 QVDTGFNRLGLSLQEALDFTH---NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +VDTG +R G + +E  D       + +    +++   SHLACADDP    N +Q   FR
Sbjct: 127 KVDTGLSRNGAAPEEWPDLVEAAARARDAGRIEITGTWSHLACADDPEHPANELQERAFR 186

Query: 184 TLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVV 236
             +      G++     LA+S+  L  P+ H  L R GI+ YG       S   P++  +
Sbjct: 187 AALDVVTAAGVDPGLRHLANSAATLTRPSTHLDLVRVGIAAYGIPPDPRLSIDLPLRPAL 246

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  AR+  +R+  AG  VSYG +    R + + +  +GY +G     +G           
Sbjct: 247 TLRARLAAVRRVPAGTGVSYGHRYVTERPTTLGLVPVGYGEGVHRAATGR---------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
             +    G  VP++G I MD  + D+ D    + GD + +FG     +    D A A+GT
Sbjct: 297 -AEAGFAGRRVPVVGTICMDQLVVDLGDLP-ADRGDVVTLFGDGSDGEPSATDWAEAAGT 354

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y+++  +G R    Y
Sbjct: 355 IGYEVVTGLGGRIRHTY 371


>gi|313157382|gb|EFR56805.1| alanine racemase [Alistipes sp. HGB5]
          Length = 792

 Score =  345 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 161/372 (43%), Gaps = 24/372 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL A+ +N +     LS   R  A+VK  +YG G  ++A  L + GV    V   +E
Sbjct: 431 LEVDLDAMIHNLNYFRSKLSFGTRLVAMVKAGSYGAGDFEVAQMLQHQGVDYLAVAFADE 490

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGV-SHPYA 125
           GV LR       I VL         ++    L P I S      F   +   G   +P  
Sbjct: 491 GVLLRERGISMPIVVLNA-DADSFDVMIANRLEPEIYSFHSLGAFADAVTHAGESRYPIH 549

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRT 184
           +++DTG +RLG   QE              + + + SHL CAD P        Q+  +  
Sbjct: 550 VKLDTGMHRLGFVEQEIAQLCATLAATPQVKAASVFSHLNCADMPEEDAYTRAQIALYDR 609

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           + +         +    A+S+ I   P   F + R G+ LYG   + N +  ++ V T +
Sbjct: 610 MSAQLAASLPYPVIRHTANSAAIERFPEAQFDMCRLGLGLYGFGFRHNDA--LRPVSTLK 667

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            RI+ I++  AG+ V YG   KLTR +  A   IGYADG    L                
Sbjct: 668 TRIVQIKRLPAGDAVGYGRAGKLTRPTTTATIPIGYADGLDRHLGCGRWS---------- 717

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLDDVALASGTTNYDL 357
             + G   PI+G++ MD  M DITD   ++ GD + +F   P   L+ +A    T +Y++
Sbjct: 718 VLVAGQPAPIIGRVCMDSCMIDITDIPGVKEGDEVSVFSPVPGNDLETMARVLDTISYEI 777

Query: 358 LVRIGTRYAKFY 369
           +  +  R  + Y
Sbjct: 778 MTSVSGRVKRIY 789


>gi|262281362|ref|ZP_06059143.1| alanine racemase 2 PLP-binding [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257188|gb|EEY75925.1| alanine racemase 2 PLP-binding [Acinetobacter calcoaceticus
           RUH2202]
          Length = 367

 Score =  345 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 147/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R       I +L GI  P          L   I S  Q+ +  K         
Sbjct: 61  LDEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVQKH-PYPAKFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q  +       N         + H + AD           Q+  
Sbjct: 120 ICLKMNSGMNRLGFKPQHYVQAWERLNNLANVSKITHMMHFSDADGDRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  +I    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEDIIKDLPG-ERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++   A E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIISVQHLDANESVGYGSNFVAEQPMTIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+++MDM   D+T   + +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTVGRVSMDMLAVDLTGIENAKVGSEVVLWGQSSTGVVLPIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTARV 361


>gi|56459152|ref|YP_154433.1| alanine racemase [Idiomarina loihiensis L2TR]
 gi|56178162|gb|AAV80884.1| Alanine racemase [Idiomarina loihiensis L2TR]
          Length = 363

 Score =  345 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 96/376 (25%), Positives = 163/376 (43%), Gaps = 23/376 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH  +  R +I  +A+++N   +       +   VVK + YG G      AL    V   
Sbjct: 1   MHYRQ-TRAEISSSAIQHNAKWVRRKMAGGKLLGVVKADGYGHGVVPAVNALEEL-VDGM 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCG 119
               +EE + +R    +  + +L G     E  +  +  L PV+    QL +  +     
Sbjct: 59  AAGFMEEALAVRETGYKGPLVILEGCFSATELNLCCEHQLSPVVHCEQQLEYIEQA-KLT 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 L+VDTG +RLG S ++A          K      ++SHLA A D    +N+ Q 
Sbjct: 118 SPLWVWLKVDTGMHRLGWSEEQAPQALKRLRASKNVAGVTLMSHLANA-DAEHRLNARQK 176

Query: 180 ERFRTLISHYKGIEA-SLASSSGILL----GPNYHFQLTRPGISLYGGTDKI--NKSHPM 232
           ++F  L    K  +A S  +S+G+L              R G+ LYG            +
Sbjct: 177 QQFCQLSETLKDYQARSFHNSAGLLNPDTQWSLQDNDWARAGLLLYGVNPSTVTEVQAEL 236

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +   A +I + +   GE V YG      + S+IA  A+GYADGYP            
Sbjct: 237 KPAMRLVAPVIALHQLEKGESVGYGSGWSADKPSVIATVAMGYADGYPRQAEN------- 289

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
               G    ++G  V + G+++MDM   D+T   ++++GD ++++GP+I + +VA  + T
Sbjct: 290 ----GTPAMVRGKRVGLAGRVSMDMLTIDVTGIENLQLGDDVELWGPNIDVREVAACADT 345

Query: 353 TNYDLLVRIGTRYAKF 368
            ++ LL  +  R  + 
Sbjct: 346 ISWHLLTGVSGRVPRV 361


>gi|299771998|ref|YP_003734024.1| alanine racemase [Acinetobacter sp. DR1]
 gi|298702086|gb|ADI92651.1| alanine racemase [Acinetobacter sp. DR1]
          Length = 367

 Score =  345 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 146/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHRQALQNNLAVVRKTMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R       I +L GI  P          L   I S  Q+ +  K         
Sbjct: 61  LDEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVEKH-PYPAQFN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q  +       N         + H + AD           Q+  
Sbjct: 120 VCLKMNSGMNRLGFKPQNYVQAWERLNNLANVSKITHMMHFSDADGDRFGQQGIDYQITA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  +I    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEEIIKDLPG-ERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++     E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIISVQHLEPNESVGYGSNFVAEQPITIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+++MDM   D+T   S +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTIGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTVRV 361


>gi|297380139|gb|ADI35026.1| alanine racemase [Helicobacter pylori v225d]
          Length = 377

 Score =  345 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 172/381 (45%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR Y  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSYFSKTPILILGYSPNANASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|54022846|ref|YP_117088.1| alanine racemase [Nocardia farcinica IFM 10152]
 gi|54014354|dbj|BAD55724.1| putative alanine racemase [Nocardia farcinica IFM 10152]
          Length = 381

 Score =  345 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 163/378 (43%), Gaps = 25/378 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +   +DL A+ +N   +   +G+A    VVK + Y  G  ++A     AG ++  VT+V 
Sbjct: 11  VEAVVDLDAIAHNVRVLREYAGDAAMMVVVKADGYNHGAVEVARTALAAGARELGVTTVA 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           E ++LR     A +                 ++   +S   Q     +   + G +    
Sbjct: 71  EALRLREAGITAPVLCWLNTLSADYAAAVAADIEIGVSGTEQLRAVATAARATGRTATVT 130

Query: 126 LQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L+VDTG NR G++  E    LD       +K  +L  + SHLA AD+P       Q +RF
Sbjct: 131 LKVDTGLNRNGIAADELPTVLDLLGELVEEKTVRLRAMFSHLAHADEPKHPFLDEQRDRF 190

Query: 183 -----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVV 236
                       +     LA+S+  +  P+  F + RPGI++YG +         ++  +
Sbjct: 191 TAAAAAATARGLRPELLHLANSAATVTRPDLAFDMVRPGIAVYGLSPVPELGDFGLRPAM 250

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +A++ L+++   GE VSYG Q    RD+ +A+   GYADG    LSG           
Sbjct: 251 TFQAQVALVKRVAEGEGVSYGHQWIAPRDTTVALIPAGYADGVFRPLSGRFD-------- 302

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPDIKL---DDVALASGT 352
               ++ G   P +G++ MD  + D+ D    +  GD   +FG    +    + A   GT
Sbjct: 303 ---VWLGGTRRPNVGRVCMDQFVVDLGDDAAGVAAGDTAVLFGGGPGVPGAQEWADLLGT 359

Query: 353 TNYDLLVRIGTRYAKFYT 370
            +Y+++     R  + Y 
Sbjct: 360 IHYEVVCSPRGRAVRRYV 377


>gi|257094224|ref|YP_003167865.1| alanine racemase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046748|gb|ACV35936.1| alanine racemase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 367

 Score =  345 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 110/374 (29%), Positives = 171/374 (45%), Gaps = 25/374 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS----GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
             +  +ID  AL++N+      +    G AR  AVVK NAYG G  + A AL +     F
Sbjct: 3   RPIAARIDGGALRHNYLLARNQARRGEGRARAWAVVKANAYGHGLLRAARALADV-ADGF 61

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            +  +EE V+LR    +  I +L G     +  +    +L  V+  + QL    +  S  
Sbjct: 62  ALLDLEEAVRLRDAGIRQPILLLEGFFEAADLAVCAAHDLTLVVHRLEQLQMLRRA-SLP 120

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQ 178
           V  P  L++++G NRLGL+  E                  +++H A AD        + Q
Sbjct: 121 VRLPIFLKLNSGMNRLGLTAAELPAVRRELAASPAVSAVTLMTHFAEADGDGGEACITWQ 180

Query: 179 LERFRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PM 232
           LERF  +++ +        SLA+S+ IL  P       RPGI LYGG+   ++      +
Sbjct: 181 LERFAGMLADWPEAATWPVSLANSAAILRYPQTARDWVRPGIMLYGGSPFADQDAASLGL 240

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T  +RI+ +++   GE V YGG     R + + V A GYADGYP    G       
Sbjct: 241 KPVMTLHSRILAVQEIAVGERVGYGGTFVARRPTRVGVVACGYADGYPRHAPG------- 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
               G    + G     LG+++MDM   D+TD  +  V   + ++G  +  D VA A+GT
Sbjct: 294 ----GTPIVVAGQATTTLGRVSMDMLACDLTDLPAAGVNSPVVLWGEGLAADAVAAAAGT 349

Query: 353 TNYDLLVRIGTRYA 366
            +Y+L   +  R  
Sbjct: 350 ISYELFCALARRVP 363


>gi|294101224|ref|YP_003553082.1| alanine racemase [Aminobacterium colombiense DSM 12261]
 gi|293616204|gb|ADE56358.1| alanine racemase [Aminobacterium colombiense DSM 12261]
          Length = 374

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 99/378 (26%), Positives = 154/378 (40%), Gaps = 23/378 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              RL++DL  ++NN+ ++    G + R   VVK +AY LG +KI   L + GV  F V 
Sbjct: 4   RPTRLEVDLEKVRNNYRAIRKHVGESVRIFGVVKGDAYNLGADKIGRVLADMGVDFFAVA 63

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSH 122
           + +E + LR    ++ I VL     G  +      +   I+        S   +      
Sbjct: 64  TGDEAISLRESGIESPILVLGPSPYGIAEEYVRLGIRAAINDKGIAKALSDASVRLQKPA 123

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++D+G  R+G    EA D      +     L  I +H A +D         Q   F
Sbjct: 124 YGHVKIDSGMGRIGFFPHEAADAVEEISHLPGLNLEGIFTHFAISDARDLTYTYEQHSTF 183

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235
             +I   +            +S   L  P +     RPG  + G        +S  ++ V
Sbjct: 184 VKVIGELEKRGITFSIKHCCNSGATLALPQFVMDGVRPGQLVVGMYPSKEVVRSIAIEPV 243

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
              +  I  IR   AG+ +SYG   + T D  IAV  +GY DGY   LSG          
Sbjct: 244 FEFKTAISAIRTVPAGKKLSYGLTYETTADERIAVIPVGYHDGYSRELSG---------- 293

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
            G +  I G   PI+G+I MD  + D++   + ++GD + + G      I  D++A   G
Sbjct: 294 KGTEVLIHGKRCPIVGRICMDQALVDVSVLQNPQIGDEVVLLGKQGEETITGDEIADKIG 353

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T    L   IG R  + Y
Sbjct: 354 TIFTTLPNMIGKRVPRVY 371


>gi|158523327|gb|ABW70802.1| alanine racemase [Helicobacter pylori]
          Length = 377

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 170/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  ++ S+ Q   +S++           L
Sbjct: 68  ALELRSHFSKTPILILGYSPNANASMLIDNDLSAMVFSLEQAEVFSQIALKAKKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTD--KINKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG     ++ +S P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNEMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + D    + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSARANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|254779539|ref|YP_003057645.1| Alanine racemase [Helicobacter pylori B38]
 gi|254001451|emb|CAX29451.1| Alanine racemase [Helicobacter pylori B38]
          Length = 377

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 95/381 (24%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIIPKDACVMAVVKANAYGVGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR Y  +  I +L         ++ D +L  ++ S  Q   +S+  +         L
Sbjct: 68  ALELRSYFSKTPILILGYSPNSNASMLIDNDLSAMVFSFEQAEVFSQMALKSQKRLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTD--KINKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG     ++ +S P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNEMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + VV+ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVVSLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348
                 +  I   + P++GK+ MD     + D    + GD + +FG          ++A+
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSTKANDASEIAV 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 813

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 113/370 (30%), Positives = 165/370 (44%), Gaps = 25/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL++N +    L     +  A+VK  +YG G  +IA  L    V    V   +E
Sbjct: 457 LEINLNALEHNLNVYRGLVPKEVKMMAMVKAFSYGSGSFEIANLLQFNQVDYLTVAYADE 516

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV+LR       I V+        + +   NL P I S   L  +   +      + P  
Sbjct: 517 GVELRNAGITLPIVVMSP-DENAFESVVQHNLEPEIYSFRILHAFISFVRIKDLKNFPIH 575

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQ---LER 181
           ++VDTG +RLG    EA         + + ++    SHLA A +P  +   + Q   L++
Sbjct: 576 IKVDTGMHRLGFMPDEAEALIDILRQQDVVRVQSAFSHLASAANPQDNAFTAEQILKLDQ 635

Query: 182 FRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           F   +    G      +A++SGI L P+ +F + R GI +YG          +QTV   +
Sbjct: 636 FAKKLQQELGYSFLRHIAATSGIELWPSAYFDMVRLGIGMYGVEAS-RTDLSLQTVGVLK 694

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +  I+   A E V Y     L RDS IA   IGYADGY                  GK
Sbjct: 695 TNVTQIKHIPASETVGYNRHGVLHRDSKIATIKIGYADGYDRRFGNGV----------GK 744

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G++VP +G I MDM M D+TD   +   D + +F PDI     A + GT  Y+LLV
Sbjct: 745 MLVNGHLVPTVGDICMDMCMLDVTDIA-VSEEDEVVVF-PDITA--AANSIGTIPYELLV 800

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 801 NISQRVKRVY 810


>gi|208434844|ref|YP_002266510.1| alanine racemase, biosynthetic [Helicobacter pylori G27]
 gi|226711047|sp|B5Z7U5|ALR_HELPG RecName: Full=Alanine racemase
 gi|208432773|gb|ACI27644.1| alanine racemase, biosynthetic [Helicobacter pylori G27]
          Length = 377

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 95/381 (24%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR + P+  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFPKTPILILGYSPNTNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTD--KINKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG     ++ +S P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + D    + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSARANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIAYETISTLSKRLERVY 376


>gi|317014351|gb|ADU81787.1| alanine racemase [Helicobacter pylori Gambia94/24]
          Length = 377

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 92/382 (24%), Positives = 174/382 (45%), Gaps = 32/382 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTHSLRHNFDAVKSIVPKDACVMAVVKANAYGAGALKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  ++ S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNTNASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPTFKSIETIKKIRALKGLEVEGIFTHLSNADANIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTD--KINKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG     ++ +S P   
Sbjct: 188 LEQLLNQKIEFKYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSSEMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +ARI+ I++   GEL+ YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKARIVQIKRVKKGELIGYGKHFYTNEETLVGVLALGYADGLVRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIEAKEGDEVILFGDKSAKANDASEIAT 355

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
              T  Y+ +  +  R  + Y 
Sbjct: 356 LLNTIPYETISTLSKRLERVYV 377


>gi|126697057|ref|YP_001091943.1| alanine racemase [Prochlorococcus marinus str. MIT 9301]
 gi|126544100|gb|ABO18342.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9301]
          Length = 399

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 183/382 (47%), Gaps = 29/382 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +++   AL+ N   +   L  N +  AVVK + YG   + +       G  +  V 
Sbjct: 26  QRAWIEVKGKALETNVRQLRTKLRKNCQFMAVVKADGYGHDAKVVCDYAIKGGASELGVA 85

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MSCGVS 121
           ++EEG+KLR +  +  I +L  ++  ++ II F  +L+P ISS+ +    + +    G+ 
Sbjct: 86  TLEEGIKLRSFGVKKPILILGNLYTKRDLIISFKNDLMPTISSIRECLVCNNIGKHFGLK 145

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD----PSSHVNSV 177
               L+VDTG +RLG   ++ +       + +   +  I SHL+ AD+     S  +   
Sbjct: 146 FSLHLKVDTGMSRLGFESKKFIQQFEKIKSFENISIEGIYSHLSSADENNALDSQSITQS 205

Query: 178 QLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230
           Q  +F  L+          I+  LA+S+G+LL  ++HF + R G+S+YG +   KI+K+ 
Sbjct: 206 QRLKFNELLKQINFDRNNEIKIHLANSAGMLLSKDFHFHMVRVGLSMYGYSPLAKIDKNL 265

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  ++ + ++  IR    G  VSYGG+    R + +AV +IGYADG P  LSG     
Sbjct: 266 LLKPALSLKVKVAFIRTIDKGVSVSYGGKFVSNRKTKLAVLSIGYADGVPRNLSGKI--- 322

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   K        P +G ITMD  M DITDS  I+VG  + + G D    I   + 
Sbjct: 323 --------KVIHNNKFYPQVGSITMDQMMVDITDSKEIKVGSIMVLLGSDGDKTISPLEW 374

Query: 347 ALASGTTNYDLLVRIGTRYAKF 368
           +  S T  +++L     R  K 
Sbjct: 375 SRKSNTIPWEILCSFKNRLPKV 396


>gi|115525335|ref|YP_782246.1| alanine racemase [Rhodopseudomonas palustris BisA53]
 gi|115519282|gb|ABJ07266.1| alanine racemase [Rhodopseudomonas palustris BisA53]
          Length = 404

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 133/364 (36%), Positives = 186/364 (51%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  +   +  A  A VVK + YG G   +  AL  AG + FFV ++EE 
Sbjct: 31  LTIDLDALIANWRRLEKTAVPAECAGVVKADGYGCGAGPVTKALAAAGCKTFFVATLEEA 90

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
             +R   P+A ++VL G+ P        T   PVI S+ +L  +       G     A+ 
Sbjct: 91  RAVRAAAPEAALYVLNGLFPNCGDGFAATGAQPVIGSLDELAEWDVFCRRTGWKGGAAIH 150

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGLS+ EA            G ++L++SHLACAD  +  +N+ Q+  FR +  
Sbjct: 151 IDTGMNRLGLSIAEAQGIVPRINAGDHG-ITLVMSHLACADMLNHPLNAKQVGAFREIAG 209

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASLA+SSGI LG ++ F + RPG +LYG        +PMQ VVT +ARI+ +R+
Sbjct: 210 LFSGVPASLAASSGIYLGSHFGFDMVRPGAALYGINPTPEADNPMQPVVTLQARILQVRE 269

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R S +AV + GYADGY     G D         G    I G   
Sbjct: 270 VERGETVGYGATWTARRASKLAVISAGYADGYFRAAGGSDGTR------GADVIIAGQRC 323

Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           PI G+I+MD+   D+TD        G    + G  I +D++    GT  Y++L  +G RY
Sbjct: 324 PIAGRISMDLLAVDVTDLAPNAARRGQMATLLGDGISVDELGHHFGTIGYEVLTSLGARY 383

Query: 366 AKFY 369
            + Y
Sbjct: 384 QRTY 387


>gi|262369147|ref|ZP_06062476.1| alanine racemase 2 [Acinetobacter johnsonii SH046]
 gi|262316825|gb|EEY97863.1| alanine racemase 2 [Acinetobacter johnsonii SH046]
          Length = 365

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 155/373 (41%), Gaps = 27/373 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   +L++N +       N++  AVVK NAYG G E++  A  +     F +  
Sbjct: 3   RPITAVIHSQSLQHNLNVARTKMPNSQVYAVVKANAYGHGIERVYQAFKS--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R       I +L GI   Q+     +  L   I S  QL + ++         
Sbjct: 61  LAEAKRIRALGWTGPILLLEGIFSEQDLFDCHELGLSFSIHSEYQLEWLARF-PLEAQFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP--SSHVNSVQLER 181
             L++++G NRLG   ++         +    Q    + H + AD         + Q + 
Sbjct: 120 VYLKMNSGMNRLGFRPEQYRQVWQQLSSLSQVQRLTHMMHFSDADGERFGRDGIAHQCQL 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237
           F  +     G   S+++S+ IL        + R GI LYG +        +   +Q  ++
Sbjct: 180 FDAITHDLPGA-RSVSNSAAILRHGQLQSDVIRSGIMLYGSSPDYPSHSIQDWDLQPAMS 238

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I I++  AG+ V YG +     D  + + A GYADGY                 G
Sbjct: 239 LRSELIAIQQLKAGDSVGYGSKFIAETDMRVGIVACGYADGYQR-----------ITATG 287

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352
               + G    ++G+++MDM   D++   + +VG  + ++G       + +D+VA  SGT
Sbjct: 288 TPILVDGQRSSLVGRVSMDMLAVDLSHLPNAQVGSEVVLWGTSKQGTVLSIDEVAAGSGT 347

Query: 353 TNYDLLVRIGTRY 365
             Y+L+  +  R 
Sbjct: 348 IGYELMCAVTARV 360


>gi|308063768|gb|ADO05655.1| alanine racemase [Helicobacter pylori Sat464]
          Length = 377

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++L  +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELCSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLSNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|317009599|gb|ADU80179.1| alanine racemase [Helicobacter pylori India7]
          Length = 377

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 93/381 (24%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N++++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFNAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNSNASMLIDNDLSTMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + +S P   
Sbjct: 188 LEQLLEQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD   +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEAILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|330895721|gb|EGH28011.1| alanine racemase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 330

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 104/339 (30%), Positives = 154/339 (45%), Gaps = 19/339 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-EAQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E  +I + +L  V+ +  QL    +    G    
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELALIVEHDLGTVVHATWQLEAIEQAR-LGKPIT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH + AD+ +S  +  QL  F 
Sbjct: 119 VWLKLDTGMHRVGLHPHEYQAGYQRLLATGKVARVVLMSHFSRADELNSGCSDEQLAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
           T        E SL +   +L  P      +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 TFRKGLAA-ETSLKNPPAVLGWPQIPSDWSRPGIMLYGATPFDQAHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +II +R+   GE V YG      R S I V A+GYADGYP                G   
Sbjct: 238 KIISVRELPVGEPVGYGATFVCDRPSRIGVVAMGYADGYPRHA-----------PTGTPV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339
            I G    +LG+++MDM   D+TD     +G  +++ G 
Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTDVPQAGLGSRVELVGQ 325


>gi|297569634|ref|YP_003690978.1| alanine racemase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925549|gb|ADH86359.1| alanine racemase [Desulfurivibrio alkaliphilus AHT2]
          Length = 380

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 107/379 (28%), Positives = 174/379 (45%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL AL+ N+ ++ +  +   R  AVVK +AYG G E  A A   AG   F V ++EE
Sbjct: 10  VEIDLKALRVNYEAVRSRVAPGIRIMAVVKADAYGHGLEAAAGAFAGAGADCFGVGTLEE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
           G++LR       + +L G  P +   + +  L PV+ +   L   S+L +  G      L
Sbjct: 70  GIRLRRAGLDGEVVLLLGFDPREAAEVVEYRLSPVVFAADGLEALSRLAADRGRQVGVHL 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-SVQLERFRTL 185
           ++D G  R G++  +              +L+ ++SH   AD P +      Q +  +  
Sbjct: 130 KLDAGMGRFGVAPADLTRLAAIITGLPGLRLAGMMSHFPLADVPGAETRCREQWQLLQAG 189

Query: 186 I------SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTV 235
                  +        +A+S+ +L  P  H  L RPGISLYG +            +Q  
Sbjct: 190 GAVCLPPAGVARPLLHMANSAALLRFPWAHGDLVRPGISLYGYSPLPVELAAAGLALQPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  +R++ ++   AG  +SYG +      + +AV  +GYADGYP  +SG          
Sbjct: 250 MSLRSRVLQVKMLPAGYGISYGHRYVTPAPTRLAVLPVGYADGYPRGVSGR--------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              +  + G  VPILG I M+  M D++   +++ GD     G      I  D++A   G
Sbjct: 301 --AQVLLGGRRVPILGTICMNACMADVSALPAVQAGDEAVFLGRQGEEFIGADELADWHG 358

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T +Y+LL RIG    + YT
Sbjct: 359 TISYELLCRIGAMNQRLYT 377


>gi|163840445|ref|YP_001624850.1| alanine racemase [Renibacterium salmoninarum ATCC 33209]
 gi|162953921|gb|ABY23436.1| alanine racemase [Renibacterium salmoninarum ATCC 33209]
          Length = 393

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 160/392 (40%), Gaps = 35/392 (8%)

Query: 1   MHSNEFL---RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M+  +F    +  IDL A++ N   +  +S  A+  AVVK + YG G   +A A   AG 
Sbjct: 1   MNRADFPVERQAVIDLEAIRQNVRRIADISSPAKVMAVVKADGYGHGAVPVAKAALEAGA 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
                  V E + LR     A +               +  +   +S        +    
Sbjct: 61  SWIGTAHVNEALALREAGIDAPLLAWLHTPATDFAAAVEAGIDLGVSGWELEYIVAAARE 120

Query: 118 CGVSHPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                   L++DTG  R G +    +  +       ++ L ++  + SHLA AD+P+   
Sbjct: 121 QQRPARVHLKIDTGLGRNGSTSSLWESLIGEALEHQDEGLLRVVGLFSHLAVADEPNRAE 180

Query: 175 NSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-- 227
              QL RFR  ++  +  G++     LA++  I   P+ HF L R G+ +YG +      
Sbjct: 181 TDDQLARFREAVAIAEDSGVDVEVRHLANTPAIFSRPDTHFDLVRAGVGIYGLSPFAGQT 240

Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            +   +   +T +  +   +   A + VSYG   +    S + +  +GY DG P      
Sbjct: 241 SEELGLTPAMTLKTLVAHCKDVPADQGVSYGLNYRTAAPSTLGLIPMGYGDGVPR----- 295

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE-----VGDYIQIFGP-- 339
                  V  GG   I   +  ++G+I MD  + D+  +  +      +G    +FG   
Sbjct: 296 -------VATGGPVRIGDQVYSVVGRIAMDQMVVDLGPNSKMADGCSLLGHEAVLFGAAA 348

Query: 340 --DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             D  +D  A A+GT NY++++RI  R  + Y
Sbjct: 349 VGDPSVDLWAAAAGTINYEVVIRIAPRVPRIY 380


>gi|239990088|ref|ZP_04710752.1| putative alanine racemase [Streptomyces roseosporus NRRL 11379]
          Length = 390

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 159/382 (41%), Gaps = 29/382 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R +IDL AL+ N   +   +  A+  AVVK + YG G    A A   AG       + 
Sbjct: 8   RARAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAARAAGATWLGTATP 67

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPY 124
            E + LR      RI        G  +   + ++      +       +   + G     
Sbjct: 68  HEALALRAAGLDGRIMCWLWTPGGPWREAIEADIDVSAGGMWALREIAAAAEAAGRPARV 127

Query: 125 ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G    +  +      ++      +++ + SH ACAD+P     + QL  
Sbjct: 128 QLKADTGLGRGGCQPADWPELVGAARDAERAGHLRITGLWSHFACADEPGHPSIAAQLAV 187

Query: 182 FRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232
           +R L+++   +G++     LA+S   L  P  HF L R GI++YG +            +
Sbjct: 188 YRDLVAYAEKEGVDPEVRHLANSPATLTIPEAHFDLVRTGIAMYGISPAPELGTSAELGL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+T  A + L++ A AG  VSYG       ++ + +  +GYADG P   SG       
Sbjct: 248 RPVMTLAAAVALVKDAPAGHGVSYGHHYTTPAETTLGLIPVGYADGVPRHASGS------ 301

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                G   + G +  + G++ MD  + D+      E G    +FGP    +    D A 
Sbjct: 302 -----GPVLVGGKVRTVAGRVAMDQFVVDLEGDRP-EAGAEAVLFGPGDRGEPTAQDWAE 355

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
           A+ T  Y+++ RIG R  + Y 
Sbjct: 356 AADTIAYEIVTRIGARVPRVYV 377


>gi|117927564|ref|YP_872115.1| alanine racemase [Acidothermus cellulolyticus 11B]
 gi|117648027|gb|ABK52129.1| alanine racemase [Acidothermus cellulolyticus 11B]
          Length = 405

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 167/382 (43%), Gaps = 28/382 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +  +DL A++ N   + A++G     AVVK + YG G    A A    G     V  
Sbjct: 28  SRAQAVVDLGAIRENVRRLRAVTG-VDVMAVVKADGYGHGLLPAARAAVRGGASWLGVAF 86

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHP 123
           VEE + LR+      I  L      +       ++   +S+            + G +  
Sbjct: 87  VEEALALRMAGIDVPILCLLAAPGERFAEAIAADVDLAVSAEWALSEVCRAATTAGRTAR 146

Query: 124 YALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L+VDTG +R G +  E  D       +    L ++  I SHL   D+P     +VQ+E
Sbjct: 147 IHLEVDTGLSRGGATPAEWPDLLAATAQARAAGLVEVVGIWSHLVHGDNPEHADTTVQVE 206

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
           RF   ++  +  GI      LA+S G LL P   + L RPGI++YG +            
Sbjct: 207 RFDEALAVAERFGIRPAVRHLANSGGALLAPRTRYDLVRPGIAVYGLSPAPALVSAGELG 266

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +   A++ L+++  AGE +SYG + +  R + +A+  +GYADG P   + +     
Sbjct: 267 LRPAMHLRAQVALVKELPAGEGISYGHRYRTLRPTRVALIPLGYADGIPRQATNVAPVWF 326

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
           P+V              I G + MD  + D+     +  GD + IFGP    +   D+ A
Sbjct: 327 PAVG----------RRTISGTVCMDQFVVDVGPDAPVAAGDDVVIFGPGDDGEPTADEWA 376

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
            A GT +Y+++ RIG R  + Y
Sbjct: 377 SAVGTISYEIVSRIGARVPRVY 398


>gi|217033976|ref|ZP_03439399.1| hypothetical protein HP9810_883g46 [Helicobacter pylori 98-10]
 gi|216943609|gb|EEC23057.1| hypothetical protein HP9810_883g46 [Helicobacter pylori 98-10]
          Length = 377

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 172/381 (45%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++ ++L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V ++ E
Sbjct: 8   VEVNTSSLRHNFGAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLYE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYSPNSNASMLIDNDLSTMIFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A+
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAV 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|227487051|ref|ZP_03917367.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093125|gb|EEI28437.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 377

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 167/382 (43%), Gaps = 29/382 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            + E   L IDL A+ +N   +   +GNA   AVVK NAY  G + + P L  AG+  F 
Sbjct: 8   ETMELTTLTIDLDAIASNAREVQKAAGNADVMAVVKANAYNHGVDLVVPVLEKAGIAGFG 67

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V ++ E  ++R  T +  +      HP Q+    + ++   ++S+ Q      L +    
Sbjct: 68  VATIPEARQVREVT-ELPVLAWIW-HPEQDLPRQEEHIDLGLASMAQ---ARALAADPTP 122

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L +DTG NR G+  +   +            ++ + +HLACAD+  + +   Q++ 
Sbjct: 123 RTVTLVIDTGLNRSGVDEENWEELCRFVAGVPHLTVTGLFTHLACADEEDNPLTGEQVDT 182

Query: 182 FRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQ 233
               ++             +A+S G+L   +  F   RPG+ LYG +         + ++
Sbjct: 183 LTRALAVARACGLNPTRNHVANSPGVLTKGDLGFSTVRPGLILYGYSPLREGDTAGYTLR 242

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  A + +++K  AGE  SYG       D   A+  +GYADG P  + G        
Sbjct: 243 PAMTWSAHVTIVKKIHAGEGASYGMTWHAPTDRYTAIVPVGYADGLPRRMQGKL------ 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                +  I G   P +G++ MD  + D+  +   +  GD   +FGP    ++ +D+ A 
Sbjct: 297 -----EVAIGGKRYPQVGRVCMDQIVVDLGPEEPQVHPGDEAFLFGPGDHGEMTVDEWAE 351

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
              T NY++L     R  + Y+
Sbjct: 352 HLETINYEVLCSPRGRVQRTYS 373


>gi|108563349|ref|YP_627665.1| alanine racemase, biosynthetic [Helicobacter pylori HPAG1]
 gi|123373729|sp|Q1CST1|ALR_HELPH RecName: Full=Alanine racemase
 gi|107837122|gb|ABF84991.1| alanine racemase, biosynthetic [Helicobacter pylori HPAG1]
          Length = 377

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 93/381 (24%), Positives = 170/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR + P+  I +L         ++ D +L  ++ S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFPKTPILILGYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + +S P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + D    + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSARANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIAYETISTLSKRLERVY 376


>gi|254525606|ref|ZP_05137658.1| alanine racemase [Prochlorococcus marinus str. MIT 9202]
 gi|221537030|gb|EEE39483.1| alanine racemase [Prochlorococcus marinus str. MIT 9202]
          Length = 399

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 106/386 (27%), Positives = 184/386 (47%), Gaps = 29/386 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ++  +   +++   AL+ N   +   LS N +  AVVK + YG   + ++      G   
Sbjct: 22  INPKQRAWIEVKGKALEINVRQLRTKLSKNCQFMAVVKADGYGHDAKVVSDYAIKGGASQ 81

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MS 117
             V +++EG+KLR +  +  I +L  ++  ++ II F  +L+P ISS+ +    + +   
Sbjct: 82  LGVATLKEGIKLRSFGVKKPILILGNLYTKKDLIISFKNDLMPTISSIRECLICNNIGKH 141

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SH 173
            G+     L+VDTG +RLG    + +       + +   +  I SHL+ AD+ +      
Sbjct: 142 FGLKFSLHLKVDTGMSRLGFESNKFVQQFEKIKSFENISIDGIYSHLSSADEDNALDPKS 201

Query: 174 VNSVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KI 226
              +Q  +F  L+          I+  LA+S+G+LL  ++HF + R G+S+YG +   KI
Sbjct: 202 TTQLQRLKFNQLLKKINLDRNNEIKIHLANSAGMLLNKDFHFNMVRVGLSMYGYSPLAKI 261

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           +K+  ++  +  + ++  IR    G  VSYGG+   +R + +AV +IGYADG P  LSG 
Sbjct: 262 DKNLLLKPALFLKVKVAFIRIIEPGVSVSYGGKFVSSRKTKLAVLSIGYADGVPRNLSGK 321

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
            +                 + P +G ITMD  M DIT S  I +G  + + G D    I 
Sbjct: 322 IN-----------VIHNNKLYPQVGSITMDQMMVDITGSNEIRIGSTMVLLGSDGDKTIS 370

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKF 368
             + A  S T  +++L     R  + 
Sbjct: 371 PLEWATKSNTIPWEILCSFKNRLPRV 396


>gi|307637632|gb|ADN80082.1| Alanine racemase [Helicobacter pylori 908]
 gi|325996226|gb|ADZ51631.1| Alanine racemase [Helicobacter pylori 2018]
 gi|325997820|gb|ADZ50028.1| Alanine racemase [Helicobacter pylori 2017]
          Length = 377

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 169/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N++++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFNAVKSIVPKDACVMAVVKANAYGAGALKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  ++ S+ Q   +S+  +         L
Sbjct: 68  ALELRSHFSKTPILILGYNPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKIHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPTFKSIEIVKKIRALKGLEVEGIFTHLSNADANIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQT-- 234
           +     + IE       +S+GIL   N +      L RPGI LYG           QT  
Sbjct: 188 LEQLLNQKIEFKYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESSQTIL 247

Query: 235 --VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V++ +ARI+ I++   GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKARIVQIKRVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + + +  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NGIEAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|104773514|ref|YP_618494.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|123251998|sp|Q1GBP6|ALR_LACDA RecName: Full=Alanine racemase
 gi|103422595|emb|CAI97198.1| Alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 376

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 87/382 (22%), Positives = 149/382 (39%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    L I+L A+K N     A L    +   VVK NAYG G  ++AP +  AG   F V
Sbjct: 6   NRPAALHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGAARLAPVMEEAGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++EG++LR       I VL      +  +    ++   +SS+  L    K L   G+ 
Sbjct: 66  AMLDEGLELRRAQIVKPILVLGLQPAEEAALAAANDISLPVSSLDWLKKAEKVLRKEGLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G S  E     +          +  + +H A AD   +     Q++
Sbjct: 126 LKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------INKSHP 231
           RF+ + S    K     + +++ IL   +    + R GI LYG           +  +  
Sbjct: 186 RFKHMESLLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                  K  +     PI+G++ MD  M  +     +  G  +++   D      L   A
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNSLRRAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++  +   R  + Y
Sbjct: 352 DWLDTIHYEVACQFNDRLDRIY 373


>gi|119945753|ref|YP_943433.1| alanine racemase [Psychromonas ingrahamii 37]
 gi|119864357|gb|ABM03834.1| alanine racemase [Psychromonas ingrahamii 37]
          Length = 375

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 91/380 (23%), Positives = 148/380 (38%), Gaps = 24/380 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +    R  I L  L +N   +   +G       +K NAYG   E IA  L + G     
Sbjct: 4   KNTHLTRAIIHLDHLTHNMKVLQKKAGKRPLFPAIKANAYGHDAEIIAKHLISLGYTTLC 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGV 120
              + E  +L      A   +L          + D +  P++SS  QL   +        
Sbjct: 64  TAHLSEAAELVEKGVNATFIILSPTLAENSDYLLDYDFQPIVSSQVQLQALAQAARRRDK 123

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                ++VDTG  R+G+   + L F      +    +  + SH   AD+ +   +  Q+ 
Sbjct: 124 QITIHVKVDTGMGRMGVRPDQLLMFLDECKAQPEIIIGGVCSHFPRADENNLSFSKTQIN 183

Query: 181 RFRTLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----Q 233
            F  L    K        +A+S+ +      H    RPGIS+YG    ++   P     +
Sbjct: 184 TFTALKKETKAYNIPLYHIANSAALFALEEAHLDAIRPGISIYGLKPSVSMVVPELNDLK 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +++  +RI L+++ +    +SYG      + SLIA   IGY DG   +LS         
Sbjct: 244 PIMSLVSRITLLKEVVQDTGISYGHLHYTDKPSLIATIPIGYGDGLSRSLSNRI------ 297

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPD----IKLDDVAL 348
                +  I       +G I MD  M D+T     + +GD + I G      I  DD+A 
Sbjct: 298 -----EVLIGNERCRQIGNICMDQCMIDVTQLRGKVSIGDEVVIIGTQGSETITADDLAK 352

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
              T NY+++  I +R  + 
Sbjct: 353 KQHTVNYEIVTAISSRVPRI 372


>gi|291451858|ref|ZP_06591248.1| alanine racemase [Streptomyces albus J1074]
 gi|291354807|gb|EFE81709.1| alanine racemase [Streptomyces albus J1074]
          Length = 391

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 153/374 (40%), Gaps = 32/374 (8%)

Query: 17  KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76
           + N  ++ A +  A   AVVK +AYG G  + A A   AG     V +  E ++LR    
Sbjct: 2   RANVRALRARTDGAAYMAVVKADAYGHGMVRCAEAALQAGATWVGVATPYEALELRAAGV 61

Query: 77  Q---ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDTGF 132
               AR+        G  +   + +L   +S +  L        + G      L+ DTG 
Sbjct: 62  TPERARVMCWLWTPGGPWREGIEADLDMSVSDLWALAEVTEAARATGRRARIQLKADTGL 121

Query: 133 NRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL---- 185
            R G    +  D    +   +   L  ++ + SH ACAD+P     + QL RF  +    
Sbjct: 122 GRNGCQPADWADLVDRARAAEREGLVTVTGLWSHFACADEPGHPSIAAQLARFDEMSGRA 181

Query: 186 -ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240
                +     +A+S  +L  P   F L RPGI++YG +          H ++ V+T  A
Sbjct: 182 YAGGLRPEVRHMANSPAVLTLPEARFDLVRPGIAMYGLSPAPELGTPADHGLRPVMTLAA 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            + L++    G  VSYG        + + +  +GY DG P   SG            G  
Sbjct: 242 PLALVKHVPGGHGVSYGHHYVTAGPTTLGLVPLGYGDGVPRHASG-----------AGPV 290

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYD 356
            + G    + G+I MD  + D+      E G    +FGP    +   +D A A+GT  Y+
Sbjct: 291 LVDGKWRTVAGRIAMDQFVVDLGGETPPE-GTEAVLFGPGDRGEPGAEDWARAAGTIGYE 349

Query: 357 LLVRIGTRYAKFYT 370
           ++ RIG R  + + 
Sbjct: 350 IVTRIGGRVPRVHV 363


>gi|315453697|ref|YP_004073967.1| alanine racemase [Helicobacter felis ATCC 49179]
 gi|315132749|emb|CBY83377.1| alanine racemase [Helicobacter felis ATCC 49179]
          Length = 378

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 97/388 (25%), Positives = 162/388 (41%), Gaps = 31/388 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M       ++ID  AL +N+  M+AL G      AVVK NAYG G  + +      G   
Sbjct: 1   MRPTRASYVEIDTHALAHNFQVMHALLGTKMSVMAVVKANAYGCGALEASAVFLEQGAGY 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
             V + +E ++LR    Q  I +L        + +   N+   +    Q  ++S   +  
Sbjct: 61  LGVATYDEALELRARFAQVPILILGFTPNHMAQELIQANITQTLFCEKQARYFSDAALKL 120

Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      ++VDTG +RLG    Q++          K  +L  I +H + AD    +    
Sbjct: 121 GRKLKVHIKVDTGMSRLGFFPTQQSAIAIAKIAQLKGLELEGIFTHHSNADALYKNYAQE 180

Query: 178 QLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI------ 226
           Q  RF   +   +  G+E     +A+S+  L  P++   + R G++LYG    I      
Sbjct: 181 QATRFIEFLEQLRRMGLEFKYQHMANSACALSMPSFGMNMARIGLALYGLHPSIYTQDAL 240

Query: 227 -NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             K   ++ V+T +A+I+ ++   AG LV YG     T+ + + V  +GY DG+   L  
Sbjct: 241 EKKGFALRHVLTLKAQIVSLKDIPAGRLVGYGEDYYCTQTTRVGVLPLGYGDGFSKILGN 300

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK--- 342
                         G + G  VP++G + MD    D+ D    + GD + + G       
Sbjct: 301 -----------KAWGLLHGQKVPVIGGVCMDQCFIDVGDI-KAQEGDEVILLGDPQSGAM 348

Query: 343 -LDDVALASGTTNYDLLVRIGTRYAKFY 369
              D+A   G  NY+ +  +  R  + Y
Sbjct: 349 GAGDIAKILGIINYEAITMLTKRLPRVY 376


>gi|332094464|gb|EGI99513.1| alanine racemase [Shigella boydii 3594-74]
          Length = 324

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 97/338 (28%), Positives = 148/338 (43%), Gaps = 24/338 (7%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGV-QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           +VK NAYG G E+I  AL   G    F + ++EE + LR    +  I +L G    Q+  
Sbjct: 1   MVKANAYGHGIERIWSAL---GATDGFALLNLEEAITLRERGWKGPILMLEGFFHAQDLE 57

Query: 94  IFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
           I+D   L   + S  QL                L+V++G NRLG      L         
Sbjct: 58  IYDQHRLTTCVHSNWQLKALQNAR-LKAPLDIYLKVNSGMNRLGFQPDRVLTVWQQLRAM 116

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL 212
                  ++SH A A+ P    +++   R        +    SL++S+  L  P  HF  
Sbjct: 117 ANVGEMTLMSHFAEAEHPDGISSAM--ARIEQAAEGLEC-RRSLSNSAATLWHPEAHFDW 173

Query: 213 TRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
            RPGI LYG +         +  ++ V+T  + II ++   AGE V YGG+     +  I
Sbjct: 174 VRPGIILYGASPSGQWRDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRI 233

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
            + A GYADGYP                G    + G     +G ++MDM   D+T     
Sbjct: 234 GIVAAGYADGYPRHA-----------PTGTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQA 282

Query: 329 EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            +G  ++++G +IK+DDVA A+GT  Y+L+  +  R  
Sbjct: 283 GIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVP 320


>gi|19111844|ref|NP_595052.1| alanine racemase Alr2 [Schizosaccharomyces pombe 972h-]
 gi|12229663|sp|Q9P5N3|ALR2_SCHPO RecName: Full=Putative alanine racemase C359.02
 gi|7838267|emb|CAB91571.1| alanine racemase Alr2 [Schizosaccharomyces pombe]
          Length = 370

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 160/382 (41%), Gaps = 34/382 (8%)

Query: 7   LRLKIDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFF 61
            R  IDL A+  N++ +  L    + +A    ++K NAYG G  ++A  L      + F 
Sbjct: 4   ARAVIDLRAIGYNYNLIRELLDEKNPDAHILCILKANAYGHGAVEVAQFLAKYCSAEGFG 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCG 119
           V S+EE ++LRL   Q RI +L G    ++++  I   N    I    QL  +       
Sbjct: 64  VASIEEALELRLSGIQNRILLLEGFFTDEDELSLIDKYNFSITIHCEEQLKSFMNY-PFK 122

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQ 178
                 L++D+G NRLG +  E  D      N K     +  +H A AD P        Q
Sbjct: 123 KPVEVHLKLDSGMNRLGFTPAEYADKYRLLKNHKNVSGIVKATHFAFADIPEKSEYTLKQ 182

Query: 179 LERFRTLISHYKGIEASLASSSGIL---LGPNYHFQLTRPGISLYGGTD------KINKS 229
              F             L++  G++        H    R G  LYG              
Sbjct: 183 WRIFEKAAGCLPD---PLSAGGGVIVVGWLNTIHMDWLRTGSMLYGLDPYDLDAKAPELP 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            P+   +   + I+ ++     + + YGG    TRDSLI V AIGY DG+P         
Sbjct: 240 KPLIPAMKLMSTIVCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFP--------- 290

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVAL 348
               V  G    I G  VP +GK+ MDM   D+TD   ++ GD + ++G P++ +++V+ 
Sbjct: 291 ---QVRNGCPVIINGKRVPTVGKVCMDMLAIDVTDVPDVKRGDDVVLWGNPELTIEEVST 347

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
            S    ++++  +  R    YT
Sbjct: 348 FSNENPFEIITGLTRRVPLQYT 369


>gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillum seropedicae SmR1]
 gi|300076027|gb|ADJ65426.1| alanine racemase protein [Herbaspirillum seropedicae SmR1]
          Length = 368

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 189/377 (50%), Gaps = 19/377 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +     L IDL A+  NW +++A    AR  AVVK +AYGLG   +  AL +AG ++F
Sbjct: 1   MSTQPTASLTIDLPAIVANWKTLSARVAPARCGAVVKADAYGLGATMVVRALLDAGCREF 60

Query: 61  FVTSVEEGVKLRLYTPQ-----ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-K 114
           FV  V EGV L+          AR+ +L G  PG E +     L PV++S+ Q+  +   
Sbjct: 61  FVALVSEGVSLKQTLADRWPKGARLHILNGTLPGDELLCLHYGLTPVLNSLEQVRSWQGY 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                     ALQVDTG  RLGL+  E    T +         + ++SHL  A++ ++ +
Sbjct: 121 ARQLDFPLAAALQVDTGMARLGLAPAEVAQLTESRAGLAGIAPTFLMSHLVSAEETANPL 180

Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           N  QLERF  +  H+  I   LA+SSGI LG ++HF   RPG +LYG        +PM+ 
Sbjct: 181 NQHQLERFVAIRRHWPEIAGCLANSSGIFLGADFHFGCVRPGAALYGVHPGGAGPNPMRP 240

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  +A +I  R+  AGE V Y    + +R + +   A+GYADGY  + S          
Sbjct: 241 VLRLQAPLIQWRELQAGESVGYNHTWQASRPTRVGTIALGYADGYLRSASNR-------- 292

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPDIKLDDVALASGT 352
              G   ++G   P++G+++MD    D++  D   +  G    +      ++ +A+ +GT
Sbjct: 293 ---GVLRLEGVEAPLIGRVSMDSITVDLSAIDPARLRPGLLFDVLDAQQDINALAVQAGT 349

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y++L  +  RY + Y
Sbjct: 350 NAYEILTSLRHRYRRHY 366


>gi|329890148|ref|ZP_08268491.1| alanine racemase [Brevundimonas diminuta ATCC 11568]
 gi|328845449|gb|EGF95013.1| alanine racemase [Brevundimonas diminuta ATCC 11568]
          Length = 361

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 185/362 (51%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL  N+ ++ A+SG A    VVK + YGLG   +   L   G + FFV    EG
Sbjct: 23  LNVDLDALARNYRTLGAVSG-APVNPVVKADGYGLGAAAVTQRLMAEGARTFFVARAAEG 81

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V+LR    P+  I++L G H     ++  +NL PVI+   QL  +             LQ
Sbjct: 82  VRLREAIGPEPVIYILDGCHGDGAAMLKASNLRPVINHPTQLQTWQAAGGGA----CGLQ 137

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG  +++A +            L L+++HLACAD+PS+ +N  Q + +   ++
Sbjct: 138 IDTGMNRLGFRVEDAPE--------PFEGLQLVMTHLACADEPSNPMNRAQRDAYAAAVT 189

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            Y  +  S A+S G  LGP++ F + RPGI LYGG  +      +  V +  A+ + +R 
Sbjct: 190 RYPSVTRSFANSGGCFLGPDFAFDVVRPGICLYGGGPEGRPHDRITPVASLIAQAVQVRD 249

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AGE V Y    +  R   +A    GYADG   +               G+ FI G M 
Sbjct: 250 VPAGETVGYSQGYRAERPMRVATVGAGYADGVLRSYGPR-----------GQVFIAGEMR 298

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI+G+++MD+   D+T  L +  GD ++IFG +  +DD A A+GT +Y+LL  I  R  +
Sbjct: 299 PIIGRVSMDVLAVDVTG-LDVTAGDPVEIFGANRLVDDAAAAAGTISYELLTSITPRVPR 357

Query: 368 FY 369
            Y
Sbjct: 358 VY 359


>gi|257453404|ref|ZP_05618699.1| alanine racemase [Enhydrobacter aerosaccus SK60]
 gi|257449156|gb|EEV24104.1| alanine racemase [Enhydrobacter aerosaccus SK60]
          Length = 361

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 165/370 (44%), Gaps = 25/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + IDL AL +N   +   +  A+  A+VK NAYG G     PA+  A      V  ++E 
Sbjct: 6   ITIDLAALTHNLQRVKDYAPTAKVLAMVKANAYGHGAVNCLPAV--AQADALGVACLQEA 63

Query: 69  VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++L+    Q  + V+ G     + +      +  V+    QL +  +           L+
Sbjct: 64  LELQQAGWQKLMVVIEGAFSLAEWQYCTAHQIECVVHHQRQLDWALQ-QPAKKGATVWLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NRLG ++ E  +      +   G   ++ +H A AD      N  Q E F + + 
Sbjct: 123 LNTGMNRLGFTVGEIKEIAQQLTSS--GYEIVLTTHFANADVIDHPNNQQQFELFDSTLQ 180

Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239
             +      I+ SL +S+GI+   + H+   RPGI LYG T       K   +Q V+   
Sbjct: 181 MLREQVNPAIKGSLCNSAGIVNWSDRHYDWVRPGIILYGATPVNHATAKQLNLQPVMHFN 240

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A I+ I    AG+ V YG +      + I + ++GYADGYP  +S               
Sbjct: 241 ASIMAIHTLKAGDSVGYGSRWTAQAPARIGIISVGYADGYPRVISDD-----------AY 289

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G   PI+G++ MDM M D+T +  + +   +Q++G    +D+V   + T +Y+LL 
Sbjct: 290 VVVAGQQAPIIGRVAMDMLMVDLTHTTEVNLDCPVQLWGNAPSIDEVGSWNDTISYELLS 349

Query: 360 RIGTRYAKFY 369
            +  R    Y
Sbjct: 350 VVTRRPTWIY 359


>gi|189025906|ref|YP_001933678.1| alanine racemase [Treponema pallidum subsp. pallidum SS14]
 gi|20141182|sp|Q56346|ALR_TREPA RecName: Full=Alanine racemase
 gi|226711066|sp|B2S3S0|ALR_TREPS RecName: Full=Alanine racemase
 gi|189018481|gb|ACD71099.1| alanine racemase [Treponema pallidum subsp. pallidum SS14]
 gi|291060047|gb|ADD72782.1| alanine racemase [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 377

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 98/383 (25%), Positives = 157/383 (40%), Gaps = 33/383 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +  I L  L++N   + + +  AR    VK +AYG G   +A A  + GV  F V  V+E
Sbjct: 5   QALIHLANLRHNLGEIMSRT-RARVCLPVKADAYGHGACDVAQAALSCGVHSFAVACVQE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL----MSCGVSHP 123
             +LR    +A I  L      +   + +  +  VIS    +   ++        G +  
Sbjct: 64  ASQLRAAGVRAPILCLSTPTAEEISSLIEHRVHTVISERAHIALIARALRQSADTGATCG 123

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLE 180
             +++DTG  R+G +  EA              L  + +H + AD           +Q  
Sbjct: 124 VHVKIDTGMGRIGCAPDEACALVQMVCATPGLHLEGVCTHFSVADSVRAEDLQYTEMQRA 183

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
            F   + + +  GI       A+S+ +L  P  HF + RPG+  YG   +          
Sbjct: 184 HFMHCVQYIRKSGISIPLVHAANSAALLCHPRAHFDMVRPGLLAYGYAPESVHPAVRSVF 243

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V+    ++  I+K  AG  VSY    +   ++ + +  IGYADG    LS        
Sbjct: 244 LPVMELVTQVRAIKKIPAGAYVSYQRLWRAHTETHVGILPIGYADGVMRALS-------- 295

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDV 346
               G +  I G   P++G I MD  + D+   L + VGD + +FGP          D +
Sbjct: 296 ---PGLQVCIGGKWYPVVGAICMDQCVVDLGTPLRVTVGDRVTLFGPQDAGGPGQGADVL 352

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A  +GT  Y+LL  IG R  + Y
Sbjct: 353 ASHAGTIPYELLCAIGKRVERVY 375


>gi|134103194|ref|YP_001108855.1| alanine racemase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915817|emb|CAM05930.1| alanine racemase [Saccharopolyspora erythraea NRRL 2338]
          Length = 378

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 164/373 (43%), Gaps = 26/373 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+ID+ A+++N   + A +  ART  +VK + YG G   +A A   AG     V ++ E 
Sbjct: 11  LRIDVDAIRHNVGVLAARAAGARTMVIVKSDGYGHGTVTVARAALEAGAGQIGVAALGEA 70

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQ 127
           V LR     A +                  +    SSV  L   +      G+     L+
Sbjct: 71  VALREAGITAPLMCWLYSRGDDFAPALRHGVELSASSVRGLREIAATAAELGLVARLHLK 130

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +DTG  R G    E  +    +   +     ++  + SHLACAD+        Q  RFR 
Sbjct: 131 IDTGLCRSGCPEAEWPNLVDEAAKAEADGHVEVVAVWSHLACADELGHPSIDNQALRFRR 190

Query: 185 LISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-NKSHPMQTVVTAE 239
                +    G    LA+S+ +L  P+ HF++ RPGI++YG      +  H ++  +T  
Sbjct: 191 AYERARTAGLGPIRHLANSAAVLTRPDLHFEMVRPGIAVYGLDPVPQDGDHGLRPAMTFR 250

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + + L ++  AGE VSYG      R   +A+  +GYADG P TLSG  S           
Sbjct: 251 SSVSLTKRVAAGESVSYGHTWTADRPVNLALVPVGYADGVPRTLSGRMS----------- 299

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
            ++ G   P++G++ MD  +  + D   +  GD + +FGP    +    + A   GT +Y
Sbjct: 300 VWLAGRRRPVVGRVCMDQLVV-LCDDDVVREGDEVILFGPGDRGEPTAAEWADELGTIHY 358

Query: 356 DLLVRI-GTRYAK 367
           +++  +   R  +
Sbjct: 359 EIVTGMYRPRVTR 371


>gi|328951278|ref|YP_004368613.1| Alanine racemase [Marinithermus hydrothermalis DSM 14884]
 gi|328451602|gb|AEB12503.1| Alanine racemase [Marinithermus hydrothermalis DSM 14884]
          Length = 364

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 160/372 (43%), Gaps = 25/372 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               L+I L AL +N   +   L       AV+K +AYG G   IA  L   GV+ F V 
Sbjct: 2   RATWLEIHLDALAHNLRVIRARLQPGTGIIAVIKADAYGHGAVPIAHELARLGVERFAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +VEEG +LR    Q  + +L  +HP +     +  LIP +S++      +          
Sbjct: 62  TVEEGARLRQARIQHPVHLLGSLHPEEAAPALEHALIPTLSTLEAARAVAAHRPGAT--- 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++ D+G  R+G+ L+    F        L ++  + +H A AD+        QLE F 
Sbjct: 119 VHVKADSGMGRVGVPLEALRRFVEEVEAMGL-EVEGVFTHFASADE-DPAATRRQLEAFL 176

Query: 184 TLISHYKG-IEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEAR 241
            + + ++G  +   A+S+ +L  P  H    RPGI+LYG    +      +  ++  +A 
Sbjct: 177 AVTAPWRGRYKLHAANSAALLRFPEAHLDFVRPGIALYGLPPGEGFAREGLWPILAWKAH 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
             L+++   G+ + YGG     R+  IA   +GYADG+   LS             G   
Sbjct: 237 PTLVKRVQPGQRIGYGGTYTAQREEWIATLPLGYADGFSRALSNR-----------GWVR 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYDL 357
           +     P++G+++MD     +   + ++     ++  PD+     L   A   GT  Y+L
Sbjct: 286 LGSTYCPVVGRVSMDQITVRLPGPVGLDA--VFEVITPDLDARTSLTGRAAQLGTIPYEL 343

Query: 358 LVRIGTRYAKFY 369
              +  R  + Y
Sbjct: 344 ATLLSPRLPRVY 355


>gi|225848038|ref|YP_002728201.1| alanine racemase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643355|gb|ACN98405.1| alanine racemase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 356

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 165/372 (44%), Gaps = 30/372 (8%)

Query: 5   EFLR--LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFF 61
           +F+R    I+   LK N  ++   S N +  AVVK +AYG     ++  L +   V+ F 
Sbjct: 2   DFIRSVALINTENLKKNVENLYKFS-NKKIFAVVKADAYGHDACIVSKTLSSLDIVEGFC 60

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V +  EG  LR       I VL GI   + ++    +L PVIS         KL      
Sbjct: 61  VATGYEGYLLREAGITKPIIVLGGILKQELELFNRYSLTPVISDFSHFEVAQKLE----H 116

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++ DTG  RLG    +         +    ++  I+SH   A D        Q+E 
Sbjct: 117 KKIHIKFDTGMRRLGFYQSDIEKLKEKIKD---FEVEGILSHFPSA-DTDPDYTKSQIEE 172

Query: 182 FRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           F+ ++           + +S+G++    +     R GI++YG     +    +  V+T  
Sbjct: 173 FKEIVKMLDVNPKYIHIQNSAGVVYDCPF-CNTIRLGIAIYGEKPTQDYPVSLYPVMTVL 231

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I ++    G+ +SY G  K  RD  +AV + GYADG P +LS             G 
Sbjct: 232 SKVISVKSVKKGDRISYCGTFKADRDMKVAVVSFGYADGLPRSLSN-----------KGY 280

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNY 355
             I G    I+G ITMDMT+ D++D  ++ VGD + I G     +IK  D+A  SGT  Y
Sbjct: 281 VLINGKYCKIVGNITMDMTIVDVSDLDTVNVGDDVVIVGKLQDKEIKFSDIAKISGTIAY 340

Query: 356 DLLVRIGTRYAK 367
           +++  I  R  +
Sbjct: 341 EIMCGISKRVIR 352


>gi|322633763|gb|EFY30503.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
          Length = 341

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 102/356 (28%), Positives = 159/356 (44%), Gaps = 28/356 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
           G    + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGT 338


>gi|84502660|ref|ZP_01000779.1| alanine racemase [Oceanicola batsensis HTCC2597]
 gi|84389055|gb|EAQ01853.1| alanine racemase [Oceanicola batsensis HTCC2597]
          Length = 343

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 129/363 (35%), Positives = 190/363 (52%), Gaps = 25/363 (6%)

Query: 9   LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + +DL AL  NW +++A S     T AV+K N YGLG + +A AL  AGV+ FFV   EE
Sbjct: 1   MTVDLDALVANWRALDAASSPETETGAVIKANGYGLGVQPVARALARAGVRRFFVAVAEE 60

Query: 68  GVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G  +R    P   I V  G   G   +I D NLIP+++SV Q+    + +     HP  +
Sbjct: 61  GAAVREAVGPNVEINVFSGHMRGDTDMIGDLNLIPMLNSVDQML---RHVEALPGHPLGI 117

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLG+  +E +     + +      +LI+SHLACAD+P   +N  QL +F+ + 
Sbjct: 118 QLDTGMNRLGMEPEEWMAVRETALDLS---PNLIMSHLACADEPDHPMNIRQLRQFKAMT 174

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           S   G+  SLA++ GILLGP YHF +TRPG+ L+GG    +     + VV  +  +I IR
Sbjct: 175 SGLGGVPLSLAATGGILLGPEYHFDVTRPGVGLFGGLPFADA----EPVVRLDLPVIQIR 230

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +  AGE V YG        ++IA  A GYADG    +    S ++               
Sbjct: 231 ELEAGETVGYGNTWTAPDRTVIATVAAGYADGIHRLMGPRTSLYAGD-----------TP 279

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P+ G+I+MD+   DIT       G  + + GP   +D +A  + T  Y++L  +G R +
Sbjct: 280 CPVRGRISMDLIGVDITHLTEEPQG--LTLLGPQQTVDVIAENAQTIGYEVLTSLGGRMS 337

Query: 367 KFY 369
           + Y
Sbjct: 338 RRY 340


>gi|289164180|ref|YP_003454318.1| alanine racemase 1, PLP-binding, biosynthetic [Legionella
           longbeachae NSW150]
 gi|288857353|emb|CBJ11181.1| alanine racemase 1, PLP-binding, biosynthetic [Legionella
           longbeachae NSW150]
          Length = 359

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 102/368 (27%), Positives = 174/368 (47%), Gaps = 21/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   RL I+ +AL +N   +   +   +  A+VK NAYG G   +AP L    V  F V 
Sbjct: 2   SRPTRLVIEPSALLHNLEQIKRFAPGKKIIAMVKANAYGCGVHIVAPVL-EGHVDAFGVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +EE + L     +    +  G+  P + KI+       VI    QL +           
Sbjct: 61  CIEEALILHKIGSRTPCILFQGVFSPDEFKIVAQHQFGCVIHQPHQLQWLLN-TPLNTPI 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++V+TG +RLG   QE  +          + +   +++HLACAD+P    N  Q+  
Sbjct: 120 KLWVKVNTGMHRLGFKPQELHEVMSALQTCTWVDKDIGLMTHLACADEPERIENYQQISL 179

Query: 182 FRTL-ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237
           F  + I+ +   + S+A+S+ I+  P  H  + RPGI LYG +   N++     +  V+ 
Sbjct: 180 FENISITGFS--QRSIANSAAIISFPQTHADVVRPGIMLYGVSPFANQTSIELGLLPVMR 237

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I  +        V Y G  K  + S+I + A GY DGYP  ++             
Sbjct: 238 FVSAISAVHHNPPFAPVGYSGIWKSEKHSVIGIVAAGYGDGYPRHIA-----------EN 286

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              +++G  VPI+G+++MDM   D+T+   ++ G  ++++G +I ++ VA A+GT+ Y+L
Sbjct: 287 TPVWVQGKEVPIVGRVSMDMLAVDLTEHQEVKPGAPVELWGKNILVERVAKAAGTSGYEL 346

Query: 358 LVRIGTRY 365
           L +I  R 
Sbjct: 347 LCQISERV 354


>gi|159039766|ref|YP_001539019.1| alanine racemase [Salinispora arenicola CNS-205]
 gi|189027391|sp|A8M4B3|ALR_SALAI RecName: Full=Alanine racemase
 gi|157918601|gb|ABW00029.1| alanine racemase [Salinispora arenicola CNS-205]
          Length = 372

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 104/379 (27%), Positives = 165/379 (43%), Gaps = 31/379 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +++DL A++ N   + +    A   AVVK + YG G    A A  + G     V +++
Sbjct: 4   AEVRVDLDAIRENVSWLRS-GSAAELMAVVKGDGYGHGMVPAALAALDGGADWLGVCTLD 62

Query: 67  EGVKLRLYTPQARIF--VLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHP 123
           E + LR     A I   +L    P  E +    +L     SV Q         + G    
Sbjct: 63  EALTLRREGITAPILAWLLAPGLPLHEGVAAGIDLGAA--SVAQLDEMVQAGRTAGRPAR 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLE 180
             L++DTG +R G ++ +       +   +     ++  + SH   AD P       QL 
Sbjct: 121 LHLKIDTGLSRGGATVSDWPGLLTAAAKAQADGTVEVVGVWSHFVYADAPGHPTTDRQLA 180

Query: 181 RFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            F   +     +  +     LA+S+  L  P+ HF L RPG+++YG +    +S  ++  
Sbjct: 181 VFHEGLDMVEKAGLRPRYRHLANSAATLTRPDAHFDLVRPGLAVYGLSPVAGESFGLRPA 240

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +TA AR++L ++  AG  VSYG      RDS +AV  +GYADG P + S           
Sbjct: 241 MTARARVMLTKQVPAGAGVSYGHTYTTERDSTLAVIPLGYADGVPRSASNS--------- 291

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             G   + G    I G++ MD  + D  D   +  GD   +FG     +   DD A A G
Sbjct: 292 --GPVHLGGVRRTISGRVCMDQFVLDCGDDP-VAPGDVAVLFGSGRNGEPTADDWAEAVG 348

Query: 352 TTNYDLLVRIGT-RYAKFY 369
           T NY+++ R G+ R  + Y
Sbjct: 349 TINYEIVTRFGSTRVPRSY 367


>gi|119503311|ref|ZP_01625395.1| alanine racemase [marine gamma proteobacterium HTCC2080]
 gi|119460957|gb|EAW42048.1| alanine racemase [marine gamma proteobacterium HTCC2080]
          Length = 355

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 105/366 (28%), Positives = 174/366 (47%), Gaps = 16/366 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               L IDL AL NN  +   L GN++  A VK NAYG G  + + AL    V  F V  
Sbjct: 3   RPTSLSIDLNALSNNAATTRRLVGNSKILASVKANAYGHGLTRCSEALNQK-VDGFAVAF 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            EE V LR       + +L G    ++   I + +L+ V+ S  Q+    K  +C ++ P
Sbjct: 62  CEEAVLLRQQGITLPLLLLEGPFDREDVDAIKEYDLMMVVHSHHQIELLQK-SACPLTSP 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++DTG +RLG S  EA               +++++H    ++P+S +   Q   ++
Sbjct: 121 VWIKIDTGMHRLGFSPAEAPSVAQRLHEMGASS-TILMTHYGEGEEPASALTQEQQRAWQ 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
           T         ++   S+ I+     +    RPGI LYG          ++ V++  + ++
Sbjct: 180 TSTHSITSATSAAN-SAAIINTLAPNTDWMRPGIMLYGAAHSDPIGASLEAVMSFRSEVM 238

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R  LAG+ V YGG+ +  RDS IA   +GY DGYP                G   +++
Sbjct: 239 AMRHILAGDTVGYGGRWRAQRDSTIATIPVGYGDGYPRGA-----------EDGTPVWLQ 287

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              VP++G+++MDM   D+TD     +G  ++++G  + +++VA  SGT  Y+LL R+  
Sbjct: 288 HQCVPLVGRVSMDMITVDVTDFAGCHIGTSVELWGKHLSVNEVAKHSGTIGYELLTRLTG 347

Query: 364 RYAKFY 369
           R    Y
Sbjct: 348 RVPVNY 353


>gi|120402493|ref|YP_952322.1| alanine racemase [Mycobacterium vanbaalenii PYR-1]
 gi|166969421|sp|A1T566|ALR_MYCVP RecName: Full=Alanine racemase
 gi|119955311|gb|ABM12316.1| alanine racemase [Mycobacterium vanbaalenii PYR-1]
          Length = 390

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 95/382 (24%), Positives = 156/382 (40%), Gaps = 26/382 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                  IDL A+ +N   +   +G A   AVVK + YG G  ++A A   AG  +  V 
Sbjct: 13  QALPTASIDLDAIAHNVAVLREHAGPAAVMAVVKADGYGHGATQVARAALAAGAAELGVA 72

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSH 122
           +V E + LR     AR+                 ++   +SS+ Q           G + 
Sbjct: 73  TVGEALALRRDGVTARVLAWLHPPGTDFAPALLADVDVAVSSLRQFTDLLDAAGRTGRTA 132

Query: 123 PYALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              ++ DTG +R G+   +          + +    ++  ++SHLA  DDP    N VQ 
Sbjct: 133 DVTVKADTGLSRNGVGEADYPALVDALRRAASDGAVRVRGLMSHLAHGDDPEHPFNDVQA 192

Query: 180 ERFRTL--ISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQ 233
            R   +  ++  +G+      L++S   L  P+  F + RPGI++YG T    +    ++
Sbjct: 193 RRLTEMAKLAGARGVSYDVVHLSNSPAALTRPDLAFDMVRPGIAVYGQTPIPQRGDFGLR 252

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T +  +  +R   AG+ VSYG       D+ +A+   GYADG    LS         
Sbjct: 253 PAMTVKCPVSAVRPVRAGDAVSYGHTWTAQTDTTLALVPAGYADGVFRALSNRF------ 306

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVAL 348
                +  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A 
Sbjct: 307 -----EVSINGRRYPNVGRICMDQFVVDLGPGPVDVAEGDDAILFGPGTDGEPTAQDWAE 361

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
              T NY+++     R  + Y 
Sbjct: 362 LLDTINYEVVTSPRGRIVRTYV 383


>gi|167589682|ref|ZP_02382070.1| alanine racemase [Burkholderia ubonensis Bu]
          Length = 377

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 153/360 (42%), Gaps = 23/360 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +      +R  AVVK NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHIRPAAVRHNLEFIRRTVAPSRVWAVVKANAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P   ++     L   +    QL              
Sbjct: 61  LDEAVRVRALGWDKPVLLLEGIFEPADVELAEHHRLTVAVHCDAQLDLLIAAKPQ-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          +++H A A          QL++F 
Sbjct: 120 IQLKMNSGMNRLGYRPAAFRAAWERAAGAPSIGKITLMTHFANA---DEGEIDWQLDQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239
              +   G E S+++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 AATAGMPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLIAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++     E V YG +    +   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAPQETVGYGRRFAADQPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G +  ++G+++MDM   D+T   +  +G +++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGMLTRVVGRVSMDMLTVDLTPCPNAGIGSHVELWGDQVKVDDVAEASGTIGYELMC 344


>gi|164688105|ref|ZP_02212133.1| hypothetical protein CLOBAR_01750 [Clostridium bartlettii DSM
           16795]
 gi|164602518|gb|EDQ95983.1| hypothetical protein CLOBAR_01750 [Clostridium bartlettii DSM
           16795]
          Length = 389

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 167/385 (43%), Gaps = 36/385 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              ++IDL+  K+N   +  L   + +   VVK NAYG G   +A    + G++ F V  
Sbjct: 18  RAWVEIDLSKFKHNIEVIKELLHDDVQIVGVVKANAYGHGDVVVAKYFESLGIKYFAVAC 77

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +EE +KLR    +  I +L      Q+  +   +L   +++     +  +L     +   
Sbjct: 78  IEEAIKLREGGIKGDIIILGWTPSCQKDDLIKYDLCQTLANE---AYAEELSKLPGTVRG 134

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLER 181
            ++++TG NRLG   +E +D     +     ++  I SHL+ +D   +        Q+  
Sbjct: 135 YVKLNTGMNRLG-EPKEHMDLIEKIYTLDNIKVEGIFSHLSRSDSKLEADIVFTKQQIAN 193

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPMQT- 234
           F  +I+  K  G E     L +S GI+   + H+ L RPGI LYG  +D ++ +      
Sbjct: 194 FDYVINKLKADGFELGNVHLQNSYGIVTYRDLHYDLARPGIILYGVPSDPLDDTLDNLPN 253

Query: 235 ------VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
                  ++   ++ +++    G+ V YG     T    +A   IGYADG    +S  D 
Sbjct: 254 GMKFEAPLSLRCKVAMVKDVTPGQSVGYGNNFTATETIKVATVTIGYADGLSRLVSKKDM 313

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                     K  + G     +G + MD  M D++    ++ GD + + G D    + ++
Sbjct: 314 ----------KVLVNGKYARQIGNVCMDQMMIDVSGI-DVKEGDTVTLIGQDGDNYLSVN 362

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
            ++L S T   + L  IG R  + Y
Sbjct: 363 QISLLSNTITNETLSVIGERVKRVY 387


>gi|85542701|gb|ABC71322.1| alanine racemase [Acetobacter aceti]
          Length = 368

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 185/366 (50%), Gaps = 15/366 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L I+L+A+  N+  +    G    AAVVK +AYGLG  ++AP L   G + FFV  V+EG
Sbjct: 11  LTINLSAIAENYRYLVNKLGKTVCAAVVKADAYGLGVAQVAPILEQVGAKHFFVAHVDEG 70

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           + LR Y  P   + VL+G  P   ++    NL PV++S+ Q+     L +        A+
Sbjct: 71  LALRPYLSPHTSVTVLHGPRPDAAEVCVRNNLRPVLNSLKQVAVLRDLAAKMDKPLDVAI 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG +R GLS  +           +   +SL++SHLACAD P +  N++Q ERF    
Sbjct: 131 QLDTGMSRFGLSEADIHKLMATPELLEGLSVSLVMSHLACADTPENAANAMQRERFENYA 190

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                   SL++SSGI LG  +HF L RPG +LYG   + +  +P++ VV  +  I+ IR
Sbjct: 191 RMLPKAALSLSASSGIFLGQPFHFDLVRPGAALYGVAPQNDGVNPLKPVVGLQTHILQIR 250

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G+ V YG   + T    +A  A+GY               + +    G  + KGY 
Sbjct: 251 TLSKGDRVGYGLTWQATGPCRVATIAVGY-----------ADGFARAGAAAGCAWYKGYR 299

Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +PILG+I+MD    D++      +E    +++      +D VA A GT  Y++L  +G R
Sbjct: 300 LPILGRISMDSMTVDLSAVPEGLLEEDSMVELLNESYGVDAVAKAEGTIGYEVLTSLGRR 359

Query: 365 YAKFYT 370
           Y + Y 
Sbjct: 360 YHRVYA 365


>gi|134293333|ref|YP_001117069.1| alanine racemase [Burkholderia vietnamiensis G4]
 gi|134136490|gb|ABO57604.1| alanine racemase [Burkholderia vietnamiensis G4]
          Length = 373

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 93/365 (25%), Positives = 153/365 (41%), Gaps = 23/365 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +   +  +R  AV+K NAYG G E+I P L  A      +  
Sbjct: 3   RPIVAHIRPDAVRHNLDFIRRTAARSRVWAVIKANAYGHGIERIYPGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E V++R       + +L GI  P   ++     L   +    QL              
Sbjct: 61  LDEAVRVRELGWDKPVLLLEGIFEPVDVELADRHRLTVAVHCDEQLDLLIAAQPQ-RPID 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG            +          ++ H A A        + QL +F 
Sbjct: 120 IQLKMNSGMNRLGYRPHLFRAAWERAAAAPSIGNITLMMHFANA---DEGEVAWQLNQFD 176

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
              +   G E S ++S+ +L  P  H    RPG  LYG +           P+   +T  
Sbjct: 177 AATAGIPG-ERSTSNSAAVLWHPQAHRDWVRPGTILYGASPTGASRHIADTPLMAAMTLT 235

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++II ++     E V YG +    +   I V A GYADGYP                G  
Sbjct: 236 SKIIGVQTLAPQETVGYGRRFTAEQPMRIGVVACGYADGYPRHA-----------PTGTP 284

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G M  ++G+++MDM   D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+ 
Sbjct: 285 IAVDGVMTRVIGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMC 344

Query: 360 RIGTR 364
            +  R
Sbjct: 345 ALARR 349


>gi|264676328|ref|YP_003276234.1| alanine racemase [Comamonas testosteroni CNB-2]
 gi|299533815|ref|ZP_07047186.1| alanine racemase [Comamonas testosteroni S44]
 gi|262206840|gb|ACY30938.1| alanine racemase [Comamonas testosteroni CNB-2]
 gi|298718231|gb|EFI59217.1| alanine racemase [Comamonas testosteroni S44]
          Length = 368

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 153/376 (40%), Gaps = 30/376 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +     +A+  +V+K NAYG G E +   L       F +  
Sbjct: 3   RPITATIHPEAVRHNLERVRQAVPDAKLWSVIKANAYGHGIENVFEGLRA--TDGFAMLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R    +  I +L G+      +I     +   +    Q+ + +      V H 
Sbjct: 61  LDEAQRVRNLGWRGPILLLEGVFELRDLEICSRLGIWHAVHCDEQIDWLAAH-KTQVGHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + +                    ++H + A D    +   QL  F 
Sbjct: 120 VFLKMNSGMNRLGFTPERFRAAYARLNALPQVDEISFMTHFSDA-DVEHGL-DHQLRVFH 177

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKI----NKSHPMQTVV 236
                  G E S+++S+  LL     N      RPGI LYG +            ++  +
Sbjct: 178 ETTLDLPG-ERSVSNSAATLLHGDENNVRCDWVRPGIVLYGSSPDFPTHDAAHWGLEPTM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  ++II  ++  AG+ V YG + +      + V A GYADGYP                
Sbjct: 237 TLSSKIIGTQELHAGDTVGYGSRFQCDGPLRLGVVACGYADGYPR-----------VCPT 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    + G     LG+++MDM   D++      +G  + ++G       + +D+VA A+G
Sbjct: 286 GTPVLVDGVRTRTLGRVSMDMMAVDLSPVPKARLGSEVTLWGRASNGAVLPIDEVAAAAG 345

Query: 352 TTNYDLLVRIGTRYAK 367
           T  Y+L+  +  R  K
Sbjct: 346 TLGYELMCAVAPRVPK 361


>gi|220934104|ref|YP_002513003.1| alanine racemase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254802394|sp|B8GNS7|ALR_THISH RecName: Full=Alanine racemase
 gi|219995414|gb|ACL72016.1| alanine racemase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 361

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 107/373 (28%), Positives = 174/373 (46%), Gaps = 20/373 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               R +IDL AL++N  +    +  +R  AV+K  AYG G   +A AL         ++
Sbjct: 2   RRAARARIDLNALRHNLRTARRAAPRSRVMAVIKAEAYGHGMLAVARALAAQADAF-AIS 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT--NLIPVISSVPQLTFYSKLMSCGVS 121
            ++E   LR       + VL G     + I      ++ PVI S  QL       +    
Sbjct: 61  CIDEARVLREAGVTLPLVVLQGFRDAAQLIEVARLGDVQPVIHSTGQLDVLESA-ALPAP 119

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLE 180
               L++DTG +RLGL   EA    +       +  +  +++HLACAD+P      +QL+
Sbjct: 120 LRVWLKLDTGMHRLGLPPGEAAVLQNRIAALPQVAGVPGLMTHLACADEPERPETGIQLQ 179

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
            F    +   G E S+A+S+ +L  P       RPGI LYG +    +  +S  +Q V+T
Sbjct: 180 VFDAATADLPG-ERSIANSAAVLRTPAACRDWVRPGIMLYGASPLAGETAQSLDLQPVMT 238

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A ++ +++  AG+ V YGG         +AV A+GY DGYP                G
Sbjct: 239 VSAPVVAVKRLAAGDAVGYGGGYVCQSPRTMAVVAMGYGDGYPRHA-----------PSG 287

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G    ++G+++MDM   D+T+   +  GD + ++G  + +D++A A+GT +Y+L
Sbjct: 288 TPVRVHGRRCALMGRVSMDMLCVDVTEVPGVAPGDDVTLWGEGLPVDEIAAAAGTISYEL 347

Query: 358 LVRIGTRYAKFYT 370
           L  +G R    Y 
Sbjct: 348 LCSVGGRLRLEYV 360


>gi|114777489|ref|ZP_01452486.1| biosynthetic alanine racemase [Mariprofundus ferrooxydans PV-1]
 gi|114552271|gb|EAU54773.1| biosynthetic alanine racemase [Mariprofundus ferrooxydans PV-1]
          Length = 358

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 175/367 (47%), Gaps = 28/367 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L  L +N+  +   + +A   AVVK NAYG G   +APAL+ AG + F VT  +EG K
Sbjct: 9   INLDHLCHNYRLLQQAATDASVMAVVKANAYGHGLNLVAPALFRAGCRLFAVTDADEGAK 68

Query: 71  LRL-------YTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           LR              I +L GI   G   +    +L P IS   Q              
Sbjct: 69  LRNILRSDDPAGDT-EIALLSGIFDAGDASLATTEHLTPTISDSAQCDMLQA---ADFDG 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++VDTG NRLG +  + L        +   Q+   +SHLACAD P   +N  Q ERF
Sbjct: 125 AAWIKVDTGMNRLGAAEPQVL---IRQCLQAGIQIRGFMSHLACADTPLHPMNRQQAERF 181

Query: 183 RTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
            +L       +  SL +S+GI+  P+    + RPGI+LYG      K   ++ V+   AR
Sbjct: 182 ASLCDQAAPQLPRSLLNSAGIISMPDQCLDVVRPGIALYGAEPVAEKPMGLKPVMRMTAR 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R   AGE VSY           IA+ + GYADG P  LSG            G+  
Sbjct: 242 VIQVRDIKAGETVSYSASFTAETSMRIAIVSAGYADGIPRALSGC-----------GQAS 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
               ++P+ G++ MD TM +++D+ +I+ GD ++ +G ++  +DVA    T +Y L   +
Sbjct: 291 CHDRLLPVTGRVCMDYTMLNVSDT-NIQSGDNVEFWGMELAANDVASMIDTISYTLFTGV 349

Query: 362 GTRYAKF 368
           G R  + 
Sbjct: 350 GERVRRV 356


>gi|188527764|ref|YP_001910451.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori Shi470]
 gi|226711048|sp|B2UU89|ALR_HELPS RecName: Full=Alanine racemase
 gi|188144004|gb|ACD48421.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori Shi470]
          Length = 377

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 171/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  +L++N+ ++ ++   +A   AVVK NAYG+G  K +      G     V +++E
Sbjct: 8   VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++L  +  +  I +L         ++ D +L  +I S+ Q   +S+  +         L
Sbjct: 68  ALELHSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQTALKSQKRLKVHL 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + ++ P   
Sbjct: 188 LEQLSNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++A 
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIPYETISTLSKRLERVY 376


>gi|326335280|ref|ZP_08201475.1| Mur ligase domain protein/alanine racemase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692551|gb|EGD34495.1| Mur ligase domain protein/alanine racemase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 368

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 94/373 (25%), Positives = 152/373 (40%), Gaps = 26/373 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVE 66
           L+I L  L++N   +   L  + +  AVVK N+YG     IA  L        F V    
Sbjct: 8   LEIRLDNLQHNVLQLKKYLKADTQFLAVVKANSYGNSSIAIAKYLEKKNLADYFAVAFTS 67

Query: 67  EGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122
           EG++LR       I +    HP     + I   NL P + S   +  +           +
Sbjct: 68  EGIELRKAGVTKPILI---FHPQLIDFEDIIHYNLEPTLYSKRLIIHFIDFAKKKNLYEY 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           P+ ++ ++G NRLG S++E  D       +   ++    SHL  ++D         Q+  
Sbjct: 125 PFHIKCNSGMNRLGFSVEEIDDICEIIKKQNNIKVKTAFSHLLASEDLEARSFMEKQISI 184

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           F+      +      I     ++SGIL  P  HF + R GI +YG  +        + + 
Sbjct: 185 FKDFQKKLETHFSHKIIYHNCNTSGILNYPEAHFDMVRSGIGMYGFANDTRLQKDFKPIT 244

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             ++ I  I    AG+ V Y    +  +   IA  ++G+ADG                  
Sbjct: 245 ILKSIISQIHHIQAGDYVGYNFGFQAPKAMKIATISVGHADGLNRIYGKGV--------- 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
            G  FIK    PI+G + MDM M DIT  L  + GD + IF      + +A  + T +Y+
Sbjct: 296 -GFVFIKDKKCPIVGNVCMDMIMTDITG-LDCDEGDEVIIFDERHTSETLAETAQTISYE 353

Query: 357 LLVRIGTRYAKFY 369
           L+  +  R  + +
Sbjct: 354 LVTSLSRRIKRIF 366


>gi|53803938|ref|YP_114173.1| alanine racemase [Methylococcus capsulatus str. Bath]
 gi|81823645|sp|Q607M5|ALR_METCA RecName: Full=Alanine racemase
 gi|53757699|gb|AAU91990.1| alanine racemase [Methylococcus capsulatus str. Bath]
          Length = 359

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 179/367 (48%), Gaps = 21/367 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            R  +D+ A  +N+  + A + +++  AV+K NAYG G  +   A        F V  VE
Sbjct: 5   ARAVLDMAAFAHNFAWIRAAAPDSKIMAVIKANAYGHGLIR--AARALPAADAFAVARVE 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG+ LR      RI VL G    +  ++     L PVI S  QL    +L    V     
Sbjct: 63  EGIVLRQAGIAQRIAVLQGYGDEEGMRLSARHGLEPVIHSGFQLDLLERL-DTSVPMGVW 121

Query: 126 LQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           L+ D+G +RLGL+ +E A      +   ++ Q   +++HLA AD        +QL  F  
Sbjct: 122 LKADSGMHRLGLADEEFARARLRLARMPQVRQPVPVMTHLANADATDDPTTEIQLRCFGR 181

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241
           + +  +G E S+ +S+G++          RPGI LYG +    +S P      V+T ++R
Sbjct: 182 M-AGGRG-EFSIGNSAGLMAWAAARSAWVRPGILLYGVSPFPGRSGPEEGLMPVMTLQSR 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +++   G+ V YGG     R + + +AAIGY DGYP   +            G    
Sbjct: 240 LIAVKQLKTGDAVGYGGDFICRRPTRMGIAAIGYGDGYPRRAA-----------TGTPVL 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           ++G  VP++G+++MDM   D+TD  S E+GD + ++G  + ++++AL + T  Y LL  +
Sbjct: 289 VRGRRVPLIGRVSMDMISVDLTDCPSAEIGDTVTLWGQGLPVEEIALHADTIPYVLLCNV 348

Query: 362 GTRYAKF 368
             R    
Sbjct: 349 TQRVNMV 355


>gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
 gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
          Length = 824

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 96/371 (25%), Positives = 154/371 (41%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L AL  N +   + +    +   ++K N YG G  +IA  L +  V    V   +E
Sbjct: 465 LEVNLNALVENLNYYRSFMKPETKLVCMIKANGYGTGAVEIAKTLQDHRVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD  L P + S   L    K         +P  
Sbjct: 525 GVTLRNNGITSSIMIMNPEMTA-FKTMFDYELEPEVYSFRLLDALIKAARKEGIAGYPVH 583

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           +++DTG +RLG   Q+ ++   + F ++       + SH   +D       +  Q   F 
Sbjct: 584 IKLDTGMHRLGFDPQQDIEKLIDVFKHQNALIPRSVFSHFVGSDSNDFDDFSRHQFVLFD 643

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R GI LYG   + N    +  V T 
Sbjct: 644 EASRKIQSAFPHKILRHIDNSAGIEHFPERQLDMCRLGIGLYGVNPRSNA--IIHNVCTL 701

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R   A E + Y  +  + RDSLIA   IGYADG    L              G
Sbjct: 702 KTTILQLRIVKAHETIGYSRRGTVERDSLIAAIPIGYADGLNRRLGNRH----------G 751

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++ A  T  Y++L
Sbjct: 752 YCLVNGKKADYIGNICMDVAMIDVTGI-DCKEGDAVEIFGDRLPVTVLSDALSTIPYEVL 810

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 811 TGISNRVKRVY 821


>gi|269468498|gb|EEZ80156.1| alanine racemase [uncultured SUP05 cluster bacterium]
          Length = 349

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 96/359 (26%), Positives = 161/359 (44%), Gaps = 22/359 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             I  +AL +N   +      ++  ++VK +AYG     + P +  +      V+ + E 
Sbjct: 5   ASISQSALAHNLSVVRQSCSGSKIVSMVKADAYGHHLTLVDPIIDES--DLLAVSELSEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            KLR  T    I +L G++   E       +   V+    Q+   ++           ++
Sbjct: 63  QKLREKT-DKPILLLSGVYSQDELQSALALDCHVVVHEKEQINLIAQ---TKQRIGVWIK 118

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLGL   E  +      N  L  +  ++SH ACAD+     N  QL  F  L  
Sbjct: 119 IDTGMHRLGLLANEYHECIEAFKNNTLVDVECVMSHFACADEIDHPTNEAQLNEFNQLTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               ++ S+A+S+ IL   N  F   RPGI LYG +        ++ V+   A I+ I+ 
Sbjct: 179 D--SVKRSMANSAAILSNKNALFDFVRPGIMLYGISPFGTDESNLKPVMELSAPILSIKT 236

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      + + IA+  IGY DGYP                G    I G + 
Sbjct: 237 IQTGESVGYGATWTADKKTNIAIIGIGYGDGYPRHAKN-----------GTPVCINGEIC 285

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++MD+   +I DS++ +VGD + ++G + +  + VA  S T  Y+L+  + +R 
Sbjct: 286 PLIGRVSMDLICVNI-DSITAKVGDVVTLWGNEKLSAETVATWSDTIGYELVTGVSSRV 343


>gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A]
 gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A]
          Length = 849

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 154/371 (41%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+ +N +   +L     +   ++K +AYG G  +IA  L +  V    V   +E
Sbjct: 490 LEVNLNAIVDNLNWYRSLMKPQTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVADE 549

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR       + ++        K +FD +L P + S   L    K          P  
Sbjct: 550 GVTLRKNGITNNVMIMNPEM-SSFKTLFDFDLEPEVYSFRLLEALIKAAEKEGITGFPVH 608

Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFR 183
           +++DTG +RLG    ++  +  H    +       + SH      D     +S Q   F+
Sbjct: 609 IKIDTGMHRLGFDPVKDIDELIHRLQKQSAIIPRSVFSHFVGSDSDSFDDFSSQQFALFK 668

Query: 184 TLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +G     I   + +S+GI   P     + R G+ LYG   + NK     T+   
Sbjct: 669 QGADKLQGAFPHKILFHMDNSAGIEHFPYRQMDMCRLGLGLYGINPRSNKCFN--TISEL 726

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ IR    G+ V Y  +  ++ DS+IA   IGYADG    L              G
Sbjct: 727 KTTILQIRSVPKGDTVGYSRKGVISHDSMIAAIPIGYADGLNRHLGNRR----------G 776

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG ++ +  ++    T  Y++L
Sbjct: 777 YCLVNGKKAEYVGNICMDVAMIDVTGI-DCKEGDQVEIFGKNLPVTVLSDILDTIPYEVL 835

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 836 TNVSNRVKRVY 846


>gi|260061407|ref|YP_003194487.1| Mur ligase domain-containing protein/alanine racemase
           [Robiginitalea biformata HTCC2501]
 gi|88785539|gb|EAR16708.1| Mur ligase domain protein/alanine racemase [Robiginitalea biformata
           HTCC2501]
          Length = 370

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 104/376 (27%), Positives = 155/376 (41%), Gaps = 21/376 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  +    L+IDL AL +N+  +   L    R   VVK   YG     IA  L   G   
Sbjct: 1   MPQSRDTVLEIDLGALAHNYRFLRDRLRPETRFLGVVKAYGYGSDSLAIALKLEALGADY 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMS 117
             V   +EG  LR    +  I VL+    G + +I    L P + S+  L  +  +    
Sbjct: 61  LAVAFTDEGTFLREGGVRLPILVLHPQPSGLDDLI-THRLEPALYSLRILKMFLETARRR 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNS 176
                P  L+ +TG NRLG    +          +    +    SHLA +DDP S+    
Sbjct: 120 EARGFPVHLKFNTGLNRLGFWENDVEWIAGQLEGESSLTIRSAFSHLAASDDPGSNTFTQ 179

Query: 177 VQLERFRTLIS----HYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q++ F  +++       G     L ++SGIL  P+  + + R GI LYG  +       
Sbjct: 180 RQIKSFAAIVADIREQLPGTPFFHLLNTSGILNFPDAQWDMVRSGIGLYGYGNDPEVDPL 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V     RI  + K   GE V Y    +       A   IG+ADG             
Sbjct: 240 LRPVARLRTRISQLHKIEPGEWVGYNKGYRAADFRTTATLPIGHADGIGRIYGKEH---- 295

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G   ++G   PI+G + MDMTM D+T     + GD + +FG     +D+A  +G
Sbjct: 296 ------GAFHVRGKRAPIIGNVCMDMTMIDVTGIP-CKEGDEVVVFGNGHSAEDLARGAG 348

Query: 352 TTNYDLLVRIGTRYAK 367
           T +Y+LL  I  R A+
Sbjct: 349 TISYELLTGISRRVAR 364


>gi|310778168|ref|YP_003966501.1| alanine racemase [Ilyobacter polytropus DSM 2926]
 gi|309747491|gb|ADO82153.1| alanine racemase [Ilyobacter polytropus DSM 2926]
          Length = 377

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 159/369 (43%), Gaps = 21/369 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                I+L  L  N + +   +G+ +   V+K + YG+G  + A  L   GV++F V   
Sbjct: 2   RAWADINLDNLIYNLNIIKEFAGSKKIMCVIKADGYGMGAVECARILSENGVENFGVACY 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EEG +L     +  I +L                   ISS  Q+ F   L    +     
Sbjct: 62  EEGYELYKAGIKGEILLLGATPFENIADAVKCGFQITISSFEQIDF---LRRNNLHPEVH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRT 184
           ++VDTG  RLG S +EAL       ++ +  +  + SHL+ AD P        Q+E+F+ 
Sbjct: 119 IKVDTGMGRLGFSHEEALKAIKIIRDENIADIVGVYSHLSVADMPEKDQFTLDQIEKFKV 178

Query: 185 LISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEARI 242
                      + +SSG+L         L R GI L+G    +       + V + + +I
Sbjct: 179 FEKMESIKYKHILNSSGLLRFADATESNLVRVGIILHGVVPFESELQKKFKPVFSFKTKI 238

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I + K      VSYG  +      LIA  A+GYADG+    S            GG   I
Sbjct: 239 IFLNKITEKTYVSYGNTETAEPGDLIATMAVGYADGFVREFSN-----------GGIVEI 287

Query: 303 KGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            G    ++GKI MDMTM  I + L   ++VG  + I G DI     A   GT  Y++++ 
Sbjct: 288 DGVGCRVIGKICMDMTMIKIPEELKDKVQVGTEVTIIGKDIL--KKAECIGTIPYEIMIG 345

Query: 361 IGTRYAKFY 369
           +G R A+FY
Sbjct: 346 LGRRVARFY 354


>gi|184200309|ref|YP_001854516.1| alanine racemase [Kocuria rhizophila DC2201]
 gi|183580539|dbj|BAG29010.1| alanine racemase [Kocuria rhizophila DC2201]
          Length = 645

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             +DL A+++N   +  L+      AVVK NAYG G  ++A A   AG        V E 
Sbjct: 17  AVVDLAAVRHNVGRLLELARGRTLIAVVKANAYGHGAPQVARAALEAGAHMLGTAHVSEA 76

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR     A +                 ++   +S        +     G      L++
Sbjct: 77  LALRAEGITAPVLAWLHTPSTDFAAAVREDVRLGVSGGELDAVLAAAREAGRPAVVHLKL 136

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           D+G  R G + ++           +   L  +  I +HLA AD+P+    + QL    T 
Sbjct: 137 DSGLGRNGATPEQWPALVRRVREAEGEGLLSVEGIFTHLAVADEPARPETAEQLATLTTA 196

Query: 186 I-----SHYKGIEASLASSSGILLG------PNYHFQLTRPGISLYGGTDKIN---KSHP 231
           +     +         A++ G+L                R G+ LYG +   +   +   
Sbjct: 197 VRTAREAGLSPTMVHAANTPGLLSAADREDPDAILRDAVRVGLGLYGLSPFADRTPEDFG 256

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +   +T   R+  ++   AG  VSYG   +    + +A+  +GYADG P           
Sbjct: 257 LVPAMTLRTRVANVKDVPAGAGVSYGLTYRTEGPTRLALIPLGYADGVPR---------- 306

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDIT---------------DSLSIEVGDYIQI 336
             V  G    I   + P++G+I MD  + D++                  ++ +GD   +
Sbjct: 307 --VATGAPVRIGNRLHPVVGRIAMDQCVVDLSRSRPVTEAAGKPGAAREPTVRIGDEAVL 364

Query: 337 FGP--DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           FG   +  + D A A+GT NY+++ R+  R  + + 
Sbjct: 365 FGAGSNPSVTDWADAAGTINYEVVTRLSPRVPREHV 400


>gi|300742014|ref|ZP_07072035.1| alanine racemase [Rothia dentocariosa M567]
 gi|300381199|gb|EFJ77761.1| alanine racemase [Rothia dentocariosa M567]
          Length = 437

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 158/387 (40%), Gaps = 28/387 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL AL++N   +  + G  +  AVVK +AYG G   +A ++  AG     V  V E 
Sbjct: 22  AIIDLNALEHNTRVLKDMIGERKLIAVVKADAYGHGAYPVARSVLEAGADILGVVHVTEA 81

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR     A I               + ++I   S                     L+V
Sbjct: 82  LELRSEGITAPIIAWLHTPQTDFDEALEADIILGASGWDLEAIAEAANRTKKRARVHLKV 141

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G + ++       +   +   L ++  I SHLA AD+P     + Q+ R    
Sbjct: 142 DTGLGRNGSTFEDWPALVARALELEAAGLVRIEGIFSHLAVADEPERPETARQIARLNEF 201

Query: 186 --ISHYKGIEA---SLASSSGILLGPNYHF--------QLTRPGISLYGGTDKIN---KS 229
             ++   G+      LA+S G + G +  +           R GI+LYG +       K 
Sbjct: 202 ATVARSAGLTPELVHLANSPGTITGASPLYNTNEAVLADAVRCGIALYGLSPLAGVSSKD 261

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T    +  +++  AG+ VSYG +    + + + +  +GYADG P    G    
Sbjct: 262 LNLRPVMTLGTHVCNVKEVPAGQGVSYGLRYSTDKPTTLVLIPLGYADGVPRIAEGAPVR 321

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV-----GDYIQIF--GPDIK 342
             P         ++     ++G+I MD  + D+ +    +      G    +F  G +  
Sbjct: 322 IYPRADAANP--VEPRTYRVVGRIAMDQLVVDLEEPGLADPARGILGGSAVLFGSGDNPP 379

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
           +++ A A+ T NY+++ RI  R  + Y
Sbjct: 380 VEEWAAAAQTINYEIVTRISPRVIRIY 406


>gi|46143476|ref|ZP_00135191.2| COG0787: Alanine racemase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
          Length = 343

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 31/350 (8%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           ++K NAYG G    A  L +  V+ F V  + E ++++      +I ++ G    +E + 
Sbjct: 1   MIKANAYGQGLLPAADTLADL-VEGFGVARLREALEIQETGYTGKILLIEGFFDREELLK 59

Query: 95  -FDTNLIPVISSVPQLTFYSKLMS----------------CGVSHPYALQVDTGFNRLGL 137
                   VI    QL    ++                          L++DTG +RLG+
Sbjct: 60  TLSRRFDTVIHCQEQLELLEQVAEEWQQEQQKGFWKRKAKIYFPINVWLKIDTGMHRLGV 119

Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
             ++   F        L +    +SH + AD+P       Q+  F    S Y   E S++
Sbjct: 120 HPEQVDMFYQRLKACPLVESISFVSHFSRADEPDCGYTEKQIAIFEAATSPYPTHERSIS 179

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARIILIRKALAGELVS 255
           +SSGIL     H+   RPGI ++G +           + V+T  + +I +R   AGE V 
Sbjct: 180 ASSGILYWKQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKAGEPVG 239

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           YGG     +D+ + V A+GY DGYP            +   G    + G +VPI+G+++M
Sbjct: 240 YGGTWISDKDTKLGVVAMGYGDGYPR-----------NAPEGTPVLVNGRIVPIVGRVSM 288

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           DM   D+      +VGD +  +G D+ +++VA   G  +Y+L+ ++  R 
Sbjct: 289 DMLTVDLGADSQDKVGDEVIFWGKDLLIEEVAQHIGVISYELITKLTPRV 338


>gi|254449940|ref|ZP_05063377.1| alanine racemase [Octadecabacter antarcticus 238]
 gi|198264346|gb|EDY88616.1| alanine racemase [Octadecabacter antarcticus 238]
          Length = 345

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 128/363 (35%), Positives = 187/363 (51%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL  NW S++A++ +  T AVVK + YGLG  K+  AL  AGV+ FFV   EEG
Sbjct: 6   LSVDLDALTANWRSLDAMT-DVETCAVVKADGYGLGVAKVGRALMKAGVKRFFVAVPEEG 64

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR    P   I +  G   G   +I D  L P+I+++ Q    ++ +     HP+ +Q
Sbjct: 65  AILRHAVGPNVEICIFAGHMRGDTDMIADMMLTPMINTIGQ---LTRHLEALPDHPFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL + E       +  +      L++SHLACAD P   +N  QL++F  +  
Sbjct: 122 LDTGMNRLGLEIDEWASIAEIALTQN---CRLVMSHLACADTPDHPMNRKQLDQFHLMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GILLGP YHF +TRPGI LYGG    +       V   +  +I +R 
Sbjct: 179 GI-NVPRSLAATGGILLGPEYHFDMTRPGIGLYGGAPFADA----LPVAYLDLPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y       R S IA  + GYADG    LS            G   +     V
Sbjct: 234 VEIGETVGYANAWTAQRPSKIATLSGGYADGLTRALS-----------AGANLWHGAQPV 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+++MD+   D+TD   +  G  + + G D  +D++A  +GT  Y++L  +G RY +
Sbjct: 283 PLVGRVSMDLITADVTDLPEL-PG-VLSVLGLDQTVDELAARAGTIGYEILTSLGPRYER 340

Query: 368 FYT 370
            Y+
Sbjct: 341 RYS 343


>gi|303232760|ref|ZP_07319445.1| alanine racemase [Atopobium vaginae PB189-T1-4]
 gi|302481246|gb|EFL44321.1| alanine racemase [Atopobium vaginae PB189-T1-4]
          Length = 386

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 169/388 (43%), Gaps = 33/388 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               ++++L A+++N  ++ +L +   +  A+VK +AYG G    A A+ +AG Q F V 
Sbjct: 9   RNAWMEVNLAAIRHNVRTIKSLMAPTCKLMAIVKADAYGHGAGVCARAMASAGAQQFGVA 68

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           +V+E ++LR       I +L         ++ + +++P ++S   +  Y +  ++  +  
Sbjct: 69  TVQEALELRQSGIAQPIVLLSEPPVETIDLLLENDIMPGVTSSEFVLAYGECAIAHDMVG 128

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            Y L +DTG  R+G+  ++A++F       +    +   +H A AD         Q++RF
Sbjct: 129 KYHLALDTGMTRIGIPAEDAVEFRRLVDFHRGIVCAGTYTHFATADTIGDWDFRRQVQRF 188

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235
              I      +         +++  +L P+  F + R GI+LYG     +  +   ++  
Sbjct: 189 TDAIRALHEAKLYPGIVHCDNTAATMLYPDIQFDMCRVGIALYGIHPAESTVELAELEPA 248

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           ++  ARI  +     G+ VSYG   ++      IA   IGYADG   +LSG         
Sbjct: 249 MSIRARITRVANPRIGDGVSYGMTYRVNTPYMQIATIPIGYADGLSRSLSGEMD------ 302

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMF--------DITDSLSIEVGDYIQIFGPD----IK 342
                  + G     +G+I MD  MF          T +  + VGD + I G D    I 
Sbjct: 303 -----VLVHGRRARQVGRICMDQCMFAYPLRSMTSSTMAPELAVGDVVTIMGSDKDEYIS 357

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFYT 370
            D++     T  Y++L     R  + Y 
Sbjct: 358 ADEIGQLRHTIAYEVLCNFSARLERVYV 385


>gi|332519358|ref|ZP_08395825.1| alanine racemase [Lacinutrix algicola 5H-3-7-4]
 gi|332045206|gb|EGI81399.1| alanine racemase [Lacinutrix algicola 5H-3-7-4]
          Length = 368

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 102/376 (27%), Positives = 158/376 (42%), Gaps = 21/376 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M       L+IDL ALK+N   +   LS + +  AV+K  AYG    +IA  L N  V  
Sbjct: 1   MPKAHETTLEIDLKALKHNVGYIKSKLSKDTKFLAVIKAFAYGSDALEIAKYLENLNVDY 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V    EGV LR    +  I VL+   P   K I +  L P I S   L  +  +    
Sbjct: 61  FAVAYTNEGVALRDAGIETPILVLHP-QPENFKTIIERCLEPNIYSQRVLKSFIAVAENL 119

Query: 120 VS--HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176
               +P  ++ ++G NRLG ++ +              ++  + SHLA ++D        
Sbjct: 120 KQNNYPIHIKYNSGLNRLGFNVNDIEAINKTLKQTAAIKVKSLFSHLAASEDLNEREFTL 179

Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q+  F+T  +         +    +++SGIL  P  HF + R GI LYG  +    +  
Sbjct: 180 NQIHNFKTFANTLTKALNYKVLLHQSNTSGILNYPEAHFSMVRCGIGLYGFANDNAYNKN 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +  + T +  I  I     GE + Y    K ++ +  A   IG+ADG             
Sbjct: 240 LIPIATLKTIISQIHTLNVGESLGYNRAFKASKITKTATLPIGHADGIGRQYGN------ 293

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G  ++      I+G + MDM M D+TD    + GD + IFGP  K++ +     
Sbjct: 294 ----GKGFVYVNEQKAYIVGNVCMDMIMVDVTDI-DCKEGDEVIIFGPKHKINSLTKTVD 348

Query: 352 TTNYDLLVRIGTRYAK 367
           T  Y+LL  +  R  +
Sbjct: 349 TIPYELLTAVSQRIKR 364


>gi|50083405|ref|YP_044915.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter sp. ADP1]
 gi|49529381|emb|CAG67093.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter sp. ADP1]
          Length = 365

 Score =  342 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 145/374 (38%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I L AL +N   + A +  ++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPIQAVIHLEALAHNLKIVRASAPESQVFAVVKANAYGHGIERVYQAFKQ--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  +LR       I +L GI  P          L   +    Q+ +            
Sbjct: 61  IEEAKRLRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTVHHDVQIDWIEGHPEDA-QFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP--SSHVNSVQLER 181
             L++++G NRLG    +              +    + H + AD         + Q + 
Sbjct: 120 IFLKMNSGMNRLGFKPVQYRHAWQRLNALSQVRHLTHMMHFSDADGERFGESGITYQHDL 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVT 237
           F   I    G   S+++S+ IL  P  H  + R GI LYG +            ++  ++
Sbjct: 180 FEDTIRDLPG-PKSVSNSAAILRHP-LHSDVVRGGIMLYGSSPDYPTHGLHDWSLKPTMS 237

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + II I+     E V YG      +   I + A GYADGY                 G
Sbjct: 238 LRSEIIAIQMLEPNESVGYGSSFVADQPLRIGIVACGYADGYQR-----------ISPTG 286

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352
               + G     +G+++MDM   D++      +G  + ++G       + +DDVA ASGT
Sbjct: 287 TPVLVDGIETRTIGRVSMDMLAVDLSAVPKARIGSEVVLWGYSSTGVILPIDDVAAASGT 346

Query: 353 TNYDLLVRIGTRYA 366
             Y+L+  +  R  
Sbjct: 347 VGYELMCAVTARVP 360


>gi|328478057|gb|EGF47943.1| alanine racemase [Lactobacillus rhamnosus MTCC 5462]
          Length = 379

 Score =  342 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 155/379 (40%), Gaps = 30/379 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               + ID TA+ +N  H +  L    +  AVVK +AYG G  ++A     AG   F V 
Sbjct: 7   RPATVLIDETAILHNVQHEVARLKKQTQLFAVVKADAYGHGMLRVAHVAKAAGASGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E + LR       + VL  +      I     +   +SSV  L     ++      P
Sbjct: 67  LLDEALDLRAANYTEPVLVLGIVPSQYAAIAAAQTVSLPLSSVDWLKQALPVLEAQPELP 126

Query: 124 ---YALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                + +DTG  R+G +  + L         + K   +  I +H A ADDP       Q
Sbjct: 127 PLRLHIALDTGMGRIGFTDDQTLLDAVAFIQAHPKAFTIEGIFTHFATADDPDDAYFKQQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232
           + +F  +++          +++S+  L     +  + R G+++YG     +       P+
Sbjct: 187 VAKFNHMVALLPHRPRYVHVSNSATSLWHAACNGNMVRYGVAIYGLNPSGDAIPTTPFPL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +   ++  AG+ +SYG   +   D  I    +GYADG+   L G       
Sbjct: 247 EPALSLESELTFCKQVHAGDGISYGVTYRAKGDEFIGTVPVGYADGWLRRLQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G+   I+G+I MD  M  +  +     G  + + G     +I L DVA 
Sbjct: 301 ------HVLVDGHPCEIVGRICMDQFMIRLPKAYPA--GTKVVLIGQSGDQEITLLDVAK 352

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T +Y++   + +R  +
Sbjct: 353 YSHTIHYEIACNLTSRLKR 371


>gi|163746601|ref|ZP_02153959.1| alanine racemase [Oceanibulbus indolifex HEL-45]
 gi|161380486|gb|EDQ04897.1| alanine racemase [Oceanibulbus indolifex HEL-45]
          Length = 347

 Score =  342 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 186/362 (51%), Gaps = 23/362 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+ NNW +++ L+  A T AVVK ++YGLG E++A AL  AG + FFV   EEG
Sbjct: 6   LTIDLQAIANNWRALDRLT-KAETGAVVKADSYGLGAERVANALAQAGARQFFVALAEEG 64

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR     +  I V  G   G  + I D  L P+I+S  Q     + +     HP+ +Q
Sbjct: 65  AALRQALGDRPVINVFSGHMAGDAEAIRDAALTPMINSTEQ---LLRQLETLPGHPFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G NRLG+   E       + ++    L+LI+SHLAC+D P   +N+ QL  F  +  
Sbjct: 122 LDSGMNRLGMEPAEWAALRDIAQSQP---LTLIMSHLACSDAPDHEMNAAQLRSFHDMTQ 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SL+++ GILLG +YHF +TRPGI LYGG    +     Q VVT +  +I  R 
Sbjct: 179 GI-DVARSLSATGGILLGSDYHFDVTRPGIGLYGGRPFDDA----QPVVTLDVPVIQTRT 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG          +A  A GYADG    L     E              G  +
Sbjct: 234 VTPGETVGYGNSWTADTMVTLATVAAGYADGLKRALGNAVGEACFQH--------DGKTL 285

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI+G+++MD+   DI+    +     +Q+ GP   +DD+A  +GT  Y++L  +G RY +
Sbjct: 286 PIVGRVSMDLITVDISALSDVP--QTLQLIGPGQGVDDLADWAGTIGYEILTSLGARYDR 343

Query: 368 FY 369
            Y
Sbjct: 344 HY 345


>gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 813

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 165/370 (44%), Gaps = 25/370 (6%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L AL++N +    L   + +  A+VK  +YG G  +IA  L    V    V   +E
Sbjct: 457 LEINLNALEHNLNVYRGLVPKDVKMMAMVKAFSYGSGSFEIANLLQFNQVDYLTVAYADE 516

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV+LR       I V+        + +   NL P I S   L  +   +      + P  
Sbjct: 517 GVELRNAGITLPIVVMSP-DENAFESVVQHNLEPEIYSFRILHAFISFVRIKGLKNFPIH 575

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQ---LER 181
           ++VDTG +RLG    EA         + + ++    SHLA A +   +   + Q   L++
Sbjct: 576 IKVDTGMHRLGFMPDEAEALIDILRQQDVVRVQSAFSHLASAANSQDNAFTAEQILKLDQ 635

Query: 182 FRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           F   +    G      +A++SGI L P+ +F + R GI +YG          +QTV   +
Sbjct: 636 FAKKLQQELGYSFLRHIAATSGIELWPSAYFDMVRLGIGMYGVEAS-RTDLSLQTVGVLK 694

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +  I+   A E V Y     L RDS IA   IGYADGY                  GK
Sbjct: 695 TNVTQIKHIPASETVGYNRHGVLYRDSKIATIKIGYADGYDRRFGNGV----------GK 744

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G++VP +G I MDM M D+TD   +   D + +F PDI     A + GT  Y+LLV
Sbjct: 745 MLVNGHLVPTVGDICMDMCMLDVTDIA-VSEEDEVVVF-PDITA--AANSIGTIPYELLV 800

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 801 NISQRVKRVY 810


>gi|325124086|gb|ADY83609.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 367

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 146/374 (39%), Gaps = 28/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL+NN   +     N++  AVVK NAYG G E++  A        F +  
Sbjct: 3   RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R       I +L GI  P          L   I S  Q+ +  K         
Sbjct: 61  LDEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFNIHSEAQIEWVEKHAYPA-QFD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q  +       N         + H + AD           Q+  
Sbjct: 120 VCLKMNSGMNRLGFKPQHYVQAWERLNNLANVSKITHMMHFSDADGERFGQQGIDYQINA 179

Query: 182 FRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           F  ++    G E S+++S+ IL           R GI LYG +            +Q  +
Sbjct: 180 FEEIVKDLPG-ERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + II ++     E V YG      +   I + A GYADGY                 
Sbjct: 239 SLRSEIISVQHLEPNESVGYGSNFVAEQLMTIGIVACGYADGYQR-----------ISPT 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    +       +G+++MDM   D+T   S +VG  + ++G       + +DDVA++SG
Sbjct: 288 GTPVLVDSVRTRTIGRVSMDMLAVDLTGIDSAKVGSEVVLWGQSSKGVVLPIDDVAVSSG 347

Query: 352 TTNYDLLVRIGTRY 365
           T  Y+L+  +  R 
Sbjct: 348 TVGYELMCAVTARV 361


>gi|262375688|ref|ZP_06068920.1| alanine racemase [Acinetobacter lwoffii SH145]
 gi|262309291|gb|EEY90422.1| alanine racemase [Acinetobacter lwoffii SH145]
          Length = 370

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 158/377 (41%), Gaps = 29/377 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL +N   +     N++  AVVK NAYG G E++  AL   G   F    
Sbjct: 3   RPITAIIHQQALAHNLSVVRQCMPNSQVFAVVKANAYGHGIERVYAAL--HGADGFAFLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSC--GVS 121
           +EEG +LR    +  + +L G+    +        +   I S  Q+ +  +         
Sbjct: 61  IEEGTRLRALGCKKPLLLLEGVFALTDLFECAKHEMSFAIHSSHQVQWLKQFAEIVPDAQ 120

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQL 179
               L++++G NRLG   Q+  +           +    ++H + AD     ++    Q 
Sbjct: 121 FDVFLKMNSGMNRLGFEPQQYAEIWQELHQLNNVRSITHMTHFSDADGERFGLDGIEHQH 180

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKIN----KSHPMQT 234
             F   I  ++G + SL++S+ IL      H  + R GI LYG +        +   +Q 
Sbjct: 181 FIFNKTIQGFEG-KTSLSNSAAILRHHQTLHSDIVRSGIMLYGSSPDYPTHTIQDWNLQP 239

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  + II I+   AG+ + YG +   T+D  I + A GYADGY               
Sbjct: 240 SMSLRSEIIAIQMIQAGQSIGYGSKFIATQDMRIGIVACGYADGYQRL-----------S 288

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALA 349
             G    +       LG+I+MDM   D+T     ++G  + ++G       + +D+VA +
Sbjct: 289 ATGTPVLVDSIKTQTLGRISMDMLAVDLTALPHADIGSEVVLWGQSSQGVILPIDEVAAS 348

Query: 350 SGTTNYDLLVRIGTRYA 366
           SGT  Y+L+  +  R  
Sbjct: 349 SGTIGYELMCAVTARVH 365


>gi|227541786|ref|ZP_03971835.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182492|gb|EEI63464.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 368

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 166/379 (43%), Gaps = 29/379 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           E   L IDL A+ +N   +   +GNA   AVVK NAY  G + + P L  AG+  F V +
Sbjct: 2   ELTTLTIDLDAIASNAREVQKAAGNADVMAVVKANAYNHGVDLVVPVLEKAGIAGFGVAT 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + E  ++R  T +  +      HP Q+    + ++   ++S+ Q      L +       
Sbjct: 62  IPEARQVREVT-ELPVLAWIW-HPEQDLPRQEEHIDLGLASMAQ---ARALAADPTPRTV 116

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L +DTG NR G+  +   +            ++ + +HLACAD+  + +   Q++    
Sbjct: 117 TLVIDTGLNRSGVDEENWEELCRFVAGVPHLTVTGLFTHLACADEEDNPLTGEQVDTLTR 176

Query: 185 LIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVV 236
            ++             +A+S G+L   +  F   RPG+ LYG +         + ++  +
Sbjct: 177 ALAVARACGLNPTRNHVANSPGVLTKGDLGFSTVRPGLILYGYSPLREGDTAGYTLRPAM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  A + +++K  AGE  SYG       D   A+  +GYADG P  + G           
Sbjct: 237 TWSAHVTIVKKIHAGEGASYGMTWHAPTDRYTAIVPVGYADGLPRRMQGKL--------- 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             +  I G   P +G++ MD  + D+  +   +  GD   +FGP    ++ +D+ A    
Sbjct: 288 --EVAIGGKRYPQVGRVCMDQIVVDLGPEEPQVHPGDEAFLFGPGDHGEMTVDEWAEHLE 345

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T NY++L     R  + Y+
Sbjct: 346 TINYEVLCSPRGRVQRTYS 364


>gi|86739335|ref|YP_479735.1| alanine racemase [Frankia sp. CcI3]
 gi|123724238|sp|Q2JFD6|ALR_FRASC RecName: Full=Alanine racemase
 gi|86566197|gb|ABD10006.1| alanine racemase [Frankia sp. CcI3]
          Length = 384

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 152/379 (40%), Gaps = 29/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL A++ +  ++ A +G+A T AVVK + YG G    A A    G        +EE 
Sbjct: 18  AVIDLDAVRTSVTALVARAGDAATMAVVKADGYGHGMIPCARAALEGGATWLGTAFLEEA 77

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYALQ 127
           + LR       +                 ++    S         +     G +    L+
Sbjct: 78  LALRAAGFTVPVLSWLAAPGESFAAAIAADVDLSASAGWALEEAAAAARRTGRTARVHLK 137

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            DTG  R G +  +           +   + ++  + SH A AD P       Q+ RFR 
Sbjct: 138 ADTGLGRAGATEADWPALCDAGAALEAEGVIEVIGVWSHFAFADAPGHPTVQGQIGRFRD 197

Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTV 235
            I     +        LA+S+  L+ P  HF L RPG+S+YG +       P     +  
Sbjct: 198 AIDIATKAGLHPSVRHLANSAATLVSPEAHFDLVRPGVSVYGLSPGPEIGPPAAFGLRPA 257

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T      L ++  AG  VSY  +   TR++ +AV  +GYADG P + +           
Sbjct: 258 MTLTTHAALTKRVPAGTGVSYAHRYTTTRETTLAVVPLGYADGIPRSATNT--------- 308

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
              +    G    I G + MD  + D+ D   +  GD + +FGP    +   DD A A G
Sbjct: 309 --AEVLFGGRRRRIAGTVCMDQFVLDVGDD-QVAAGDEVLLFGPGDRGEPTADDWAAALG 365

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T NY+++ R+G R  + Y 
Sbjct: 366 TINYEIVSRVGARVPRRYV 384


>gi|72163005|ref|YP_290662.1| alanine racemase [Thermobifida fusca YX]
 gi|123628791|sp|Q47LN3|ALR_THEFY RecName: Full=Alanine racemase
 gi|71916737|gb|AAZ56639.1| alanine racemase [Thermobifida fusca YX]
          Length = 374

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 100/381 (26%), Positives = 155/381 (40%), Gaps = 26/381 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + F   +IDL A+  N   +   +  A+   VVK + YG G    A A    G       
Sbjct: 2   SSFAEARIDLDAISGNIALLAERAAGAQVMGVVKADGYGHGMVPAARAALAGGATWLGTA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
            + E ++LR     A I               D  +   I S+                 
Sbjct: 62  FIAEALQLRAAGIDAPILAWLVPPGEPLTEAIDAGIDLGIGSMWVINEVIDAARQARRQA 121

Query: 123 PYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L+VDTG NR G+       A      +    L  ++ + SHLACAD+P +   + QL
Sbjct: 122 RIHLKVDTGLNRGGIGPADWSAAAAALARAEAAGLLTVTGVFSHLACADEPDNPATTAQL 181

Query: 180 ERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-Q 233
           E F   +S     G+      +A+S+ +L  P+  F L RPGI+ YG +       P  +
Sbjct: 182 EAFHQALSVVDKAGLHPQVRHIANSAALLTRPDARFDLVRPGIATYGLSPIPGLDVPGLR 241

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  A ++  ++   G  VSYG +    R++ +A+  +GY DG P   +         
Sbjct: 242 PAMTLSATLVGCKRVRPGSGVSYGYRYVTDRETNLALVPLGYGDGVPRAATNR------- 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                  F+ G    I G + MD  + DI D  ++  GD   +FGP    +    D A A
Sbjct: 295 ----APVFVAGRRRTIAGTVCMDQFVVDIGDD-TVTPGDRAILFGPGDHGEPTAQDWADA 349

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
             T +Y+++ RIG R  + YT
Sbjct: 350 LDTISYEIVTRIGRRVPRVYT 370


>gi|229551601|ref|ZP_04440326.1| alanine racemase [Lactobacillus rhamnosus LMS2-1]
 gi|258540732|ref|YP_003175231.1| alanine racemase [Lactobacillus rhamnosus Lc 705]
 gi|229315066|gb|EEN81039.1| alanine racemase [Lactobacillus rhamnosus LMS2-1]
 gi|257152408|emb|CAR91380.1| Alanine racemase [Lactobacillus rhamnosus Lc 705]
          Length = 379

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 155/379 (40%), Gaps = 30/379 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               + ID TA+ +N  H +  L    +  AVVK +AYG G  ++A     AG   F V 
Sbjct: 7   RPATVLIDETAILHNVQHEVARLKKQTQLFAVVKADAYGHGMLRVAHVAKAAGASGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E + LR       + VL  +      I     +   +SSV  L     ++      P
Sbjct: 67  LLDEALDLRAANYTEPVLVLGIVPSQYAAIAAAQMVSLPLSSVDWLKQALPVLEAQPELP 126

Query: 124 ---YALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                + +DTG  R+G +  + L         + K   +  I +H A ADDP       Q
Sbjct: 127 PLRLHIALDTGMGRIGFTDDQTLLDAVAFIQAHPKAFTIEGIFTHFATADDPDDAYFKQQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPM 232
           + +F  +++          +++S+  L     +  + R G+++YG             P+
Sbjct: 187 VAKFNHMVALLPHRPRYVHVSNSATSLWHAACNGNMVRYGVAIYGLNPSGDVIPTTPFPL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +   ++  AG+ +SYG   + T D  I    +GYADG+   L G       
Sbjct: 247 EPALSLESELTFCKQVHAGDGISYGVTYRATGDEFIGTVPVGYADGWLRRLQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G+   I+G+I MD  M  +  +     G  + + G     +I L DVA 
Sbjct: 301 ------HVLVDGHPCEIVGRICMDQFMIRLPKAYPA--GTKVVLIGQSGDQEITLLDVAK 352

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T +Y++   + +R  +
Sbjct: 353 YSHTIHYEIACNLTSRLKR 371


>gi|213962105|ref|ZP_03390369.1| alanine racemase [Capnocytophaga sputigena Capno]
 gi|213955111|gb|EEB66429.1| alanine racemase [Capnocytophaga sputigena Capno]
          Length = 369

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 153/379 (40%), Gaps = 23/379 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M + E   L+I+LTAL+ N H +   L       AVVK ++YG     IA  L   G V 
Sbjct: 1   MKTEE-TTLEINLTALEKNIHYLKNRLKPTTLFLAVVKASSYGNNSVAIASHLQKKGLVN 59

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            F V    EG+ LR       I VL+   P     I   NL P + S      +      
Sbjct: 60  YFAVAYTSEGIALRKAGITLPILVLHP-QPINFNDIVKYNLEPTLYSQRIAQLFLDYAKI 118

Query: 119 GV--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVN 175
               ++P  L+ +TG NRLG  L E  +      N    ++    SHLA ++D       
Sbjct: 119 QQLANYPVHLKCNTGLNRLGFDLSEIEETLALLKNNTTVKVKTAYSHLAASEDMNEKEFT 178

Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q+  F              +     ++SGIL  P   F + R GI +YG  + +    
Sbjct: 179 ENQINTFIAFQEKINKTFTHKVIYHQCNTSGILNYPQAQFDMVRCGIGMYGFANDVKLQQ 238

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +  ++T ++ I  +     GE + Y         +  A   +G+ADG            
Sbjct: 239 YLTPIMTLKSVISQLHTLQIGESLGYNRGYIADHITRTATIPVGHADGINRIYG------ 292

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                  G  FI G    I+G + MDM + D+T+  S + GD + +F      + +A ++
Sbjct: 293 ----KGKGFVFINGKKASIIGNVCMDMILVDVTEI-SCQEGDEVIVFDKTHTAETLAESA 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+L+  +  R  + Y
Sbjct: 348 GTISYELITSMAHRIKRIY 366


>gi|199598806|ref|ZP_03212218.1| Alanine racemase [Lactobacillus rhamnosus HN001]
 gi|258509531|ref|YP_003172282.1| alanine racemase [Lactobacillus rhamnosus GG]
 gi|199590311|gb|EDY98405.1| Alanine racemase [Lactobacillus rhamnosus HN001]
 gi|257149458|emb|CAR88431.1| Alanine racemase [Lactobacillus rhamnosus GG]
 gi|259650798|dbj|BAI42960.1| alanine racemase [Lactobacillus rhamnosus GG]
          Length = 379

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 156/379 (41%), Gaps = 30/379 (7%)

Query: 5   EFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               + ID TA+ +N  H +  L    +  AVVK +AYG G  ++A     AG   F V 
Sbjct: 7   RPATVLIDETAILHNVQHEVARLKKQTQLFAVVKADAYGHGMLRVAHVAKAAGASGFCVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++E + LR       + VL  +      I     +   +SSV  L     ++      P
Sbjct: 67  LLDEALDLRAANYTEPVLVLGIVPSQYAAIAAAQTVSLPLSSVDWLKQALPVLEAQPELP 126

Query: 124 ---YALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                + +DTG  R+G +  + L         + K   +  I +H A ADDP       Q
Sbjct: 127 PLRLHIALDTGMGRIGFTDDQTLLDAVAFIQAHPKAFTIEGIFTHFATADDPDDAYFKQQ 186

Query: 179 LERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPM 232
           + +F  +++          +++S+  L     +  + R G+++YG             P+
Sbjct: 187 VAKFNHMVALLPHRPRYVHVSNSATSLWHAACNGNMVRYGVAIYGLNPSGDVIPTTPFPL 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++ E+ +   ++  AG+ +SYG   + T D  I    +GYADG+   L G       
Sbjct: 247 EPALSLESELTFCKQVHAGDGISYGVTYRATGDEFIGTVPVGYADGWLRRLQGF------ 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    + G++  I+G+I MD  M  +  +     G  + + G     +I L DVA 
Sbjct: 301 ------HVLVDGHLCEIVGRICMDQFMIRLPKAYPA--GTKVVLIGQSGDQEITLLDVAK 352

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            S T +Y++   + +R  +
Sbjct: 353 YSHTIHYEIACNLTSRLKR 371


>gi|157414132|ref|YP_001484998.1| alanine racemase [Prochlorococcus marinus str. MIT 9215]
 gi|157388707|gb|ABV51412.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9215]
          Length = 399

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 106/386 (27%), Positives = 185/386 (47%), Gaps = 29/386 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ++  +   +++   AL+ N   +   LS N +  AVVK + YG   + ++      G   
Sbjct: 22  INPKQRAWIEVKGKALEINVRQLRTKLSKNCQFMAVVKADGYGHDAKVVSDYAIRGGASQ 81

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MS 117
             V +++EG+KLR +  +  I +L  ++  ++ II F  +L+P ISS+ +    + +   
Sbjct: 82  LGVATLKEGIKLRSFGVKKPILILGNLYTKKDLIISFKNDLMPTISSIRECFICNNIGKH 141

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----H 173
            G+     L+VDTG +RLG    + +       + +   +  I SHL+ AD  ++     
Sbjct: 142 FGLKFSLHLKVDTGMSRLGFESNKFVQQFEKIKSLENISIDGIYSHLSSADAENALDPQS 201

Query: 174 VNSVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KI 226
           +  +Q  +F  L+          I+  LA+S+G+LL  ++HF + R G+S+YG +   KI
Sbjct: 202 ITQLQRLKFNQLLKQINLDRNNEIKIHLANSAGMLLNKDFHFNMVRVGLSMYGYSPLAKI 261

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           +K+  ++  +  + ++  IR    G  VSYGG+   +R + +AV +IGYADG P  LSG 
Sbjct: 262 DKNLLLKPALFLKVKVAFIRIIEPGVSVSYGGKFVSSRKTKLAVLSIGYADGVPRNLSGK 321

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
            +                 + P +G ITMD  M DIT S  I +G  + + G D    I 
Sbjct: 322 IN-----------VIHNNKLYPQVGSITMDQMMVDITGSNEIRIGSTMVLLGSDGDKTIS 370

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKF 368
             + A  S T  +++L     R  + 
Sbjct: 371 PLEWATKSNTIPWEILCSFKNRLPRV 396


>gi|114766132|ref|ZP_01445136.1| alanine racemase [Pelagibaca bermudensis HTCC2601]
 gi|114541592|gb|EAU44634.1| alanine racemase [Roseovarius sp. HTCC2601]
          Length = 345

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 189/365 (51%), Gaps = 26/365 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +L IDL A++ NW ++  L+      AVVK +AYGLG +K+AP L +AG + FFV    
Sbjct: 4   AQLSIDLAAIRANWRALADLTTG-EAGAVVKADAYGLGVDKVAPVLADAGAKRFFVAIAS 62

Query: 67  EGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EGV LR    +   I V  G   G  + +   NL+P+I+S+ Q+    + +     HP+ 
Sbjct: 63  EGVTLRRVLGEGPEICVFSGHMKGDAEALRAANLVPMINSIDQML---RHVEALPGHPFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D+G NRLG+   E       +  +K     L++SHLACAD+P   +N++QL  FR +
Sbjct: 120 IQLDSGMNRLGMEPSEWAALREIALAQK---PRLVMSHLACADEPEHGMNALQLRTFREM 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                    SL+++ GIL+GP+YHF+LTRPGI +YGG    + +     VV     +I  
Sbjct: 177 TDDI-DAPRSLSATGGILMGPDYHFELTRPGIGIYGGLPFADAT----PVVELMLPVIQT 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+   GE V YG        + +A  A GYADG    L+             G  +    
Sbjct: 232 REVTPGESVGYGNAWVARVPTKVATIAAGYADGIHRALA-----------KKGYVWAGNT 280

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
              ILG+++MD+   D+T    +     +++ G    +D VA A GT  Y++L  +G RY
Sbjct: 281 RCKILGRVSMDLITIDVTTLKEVPE--QVELLGQKQSVDTVADAIGTIGYEVLTSLGNRY 338

Query: 366 AKFYT 370
           A+ YT
Sbjct: 339 ARTYT 343


>gi|326793406|ref|YP_004311226.1| alanine racemase [Marinomonas mediterranea MMB-1]
 gi|326544170|gb|ADZ89390.1| Alanine racemase [Marinomonas mediterranea MMB-1]
          Length = 377

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 154/369 (41%), Gaps = 24/369 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +++DL  + +N   +   SG     AVVK NAYG G  ++A A  +AG     V  ++E
Sbjct: 7   WVEVDLDRIAHNVSHIKEHSGYEHLFAVVKANAYGHGDVEVARAALDAGATHLAVAFLDE 66

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LRL      I V+  +      +  +  +   +  +  +   +     G +    L+
Sbjct: 67  ALSLRLAIKDVPILVMGPVRVEDISLAAEHKIHITVHDMDWIMQAAHYR--GPTVNVHLK 124

Query: 128 VDTGFNRLGLSLQEALDFTH-NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +D+G +R+GL+    L   +      K   L  + +H A AD       S QL+    + 
Sbjct: 125 MDSGMHRIGLTSAATLALANSTLREHKHINLVGLFTHFATADSC-KDYYSQQLKNVAEMT 183

Query: 187 SHYK---GIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAEA 240
           +            ++S+ +L   P  +    R GI++YG       S P+  +   +  +
Sbjct: 184 AGLDLNTFEYVHQSNSAALLYQTPQPNANCARLGIAMYGLAPNNEMSSPVSLKQAFSLHS 243

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RI  ++  LAG+ V YG   +      IAV  IGYADG+                     
Sbjct: 244 RITQVKSILAGDKVGYGATFEANAPMKIAVIPIGYADGWLRYHQNRS------------V 291

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            IKG + PI+G+I MD +M  I ++  I  GD + +      +D  A    T NY+++  
Sbjct: 292 SIKGKLYPIVGRICMDQSMILIDET--ITTGDQVDLINDQCTVDMAAKDLQTINYEIVCS 349

Query: 361 IGTRYAKFY 369
           I  R  + Y
Sbjct: 350 ISDRVPRRY 358


>gi|193211960|ref|YP_001997913.1| alanine racemase [Chlorobaculum parvum NCIB 8327]
 gi|193085437|gb|ACF10713.1| alanine racemase [Chlorobaculum parvum NCIB 8327]
          Length = 384

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 166/373 (44%), Gaps = 25/373 (6%)

Query: 11  IDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L++N   + A+SG+  R   +VK +AYG G  ++   L   G+++F V ++ E +
Sbjct: 24  ISLGNLRHNLACIQAISGSRCRIMGIVKADAYGHGAAQVTATLEEEGIREFGVANIHEAI 83

Query: 70  KLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           +L+      P++RI        G  +   + ++   +       T  +K  + G      
Sbjct: 84  ELKQSHRMQPESRILAFASPLAGHIEHYLEHDVEMTVCDHETVRTAEAKAAASGRRLRVQ 143

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            ++DTG  RLG++ +EA              L  I +H A     +    + QLE+F  +
Sbjct: 144 AKIDTGMGRLGVTPEEAHSLLELIDRCPNLDLVGIYTHFAEGH-KAGGFTARQLEQFLDV 202

Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVVTA 238
              Y+      +    A+S  I+  P+    + RPGI LYG      +    P++ V+  
Sbjct: 203 TGGYEQRTGRTVLKHAANSGAIVSTPSARLDMVRPGILLYGCHPMDAEPTNVPVKPVMQF 262

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           + +++ ++K  AG  +SY         + IA  + GYADG   TLS              
Sbjct: 263 QCKVMFVKKVTAGTSISYSRTWSAPTSTNIATLSAGYADGVHRTLSN-----------KA 311

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDL 357
              I G     +G +TMD TM D+  + S++VGD   +FG D     + A+A+GT +Y+L
Sbjct: 312 TVSIGGNRYHQVGTVTMDQTMVDLGQNRSVKVGDTAVLFGWDGPSAGEQAIAAGTISYEL 371

Query: 358 LVRIGTRYAKFYT 370
           L  +  R  + + 
Sbjct: 372 LCAVSKRVKRVFV 384


>gi|38233177|ref|NP_938944.1| alanine racemase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199436|emb|CAE49080.1| Putative alanine racemase [Corynebacterium diphtheriae]
          Length = 382

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 151/378 (39%), Gaps = 24/378 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L  +I   A+  N   +  +   A+   VVK + Y  G  ++A  +   G   F V ++
Sbjct: 3   LLETRISCDAIAANTRRLKDMVAPAQLMCVVKADGYNHGAPEVATVMARNGADQFGVATL 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM---SCGVSH 122
            E  +LR       I               D ++     S+  +            G   
Sbjct: 63  AEAHQLRDAGITLPILCWIWSPEQDFSAAIDRDIDLAAVSMDHVRALIAEAMRRPAGTRV 122

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              +++DT  +R G+      +            ++ + SHLACADD  S     Q E F
Sbjct: 123 RVTVKIDTELHRSGIDEANWTEAFELLHACPQVNVTGVFSHLACADDLESDYTDHQAEVF 182

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           R  IS  + +        LA+S   L  P+ HF + RPG++LYG        H ++  +T
Sbjct: 183 RRAISAGRNVGLDLPVNHLAASPATLTRPDLHFDMVRPGLALYGHEPIAGLDHGLREAMT 242

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               + +++   AG+  SY        D  + V  +GYADG P  + G            
Sbjct: 243 WIGSVTVVKPIAAGQGTSYNMTWHAPADGYLCVVPVGYADGLPRNVQGHL---------- 292

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD----IKLDDVALASGT 352
            +  I G   P +G++ MD  +  + D S  +  GD   IFGP     + + ++A A+GT
Sbjct: 293 -EVTIAGTRYPQVGRVCMDQIVVFLGDNSRGVAPGDEAIIFGPRDTQAMTVTELACATGT 351

Query: 353 TNYDLLVRIGTRYAKFYT 370
            NY++L R   R  + Y+
Sbjct: 352 INYEILCRPTGRSHRTYS 369


>gi|86608143|ref|YP_476905.1| alanine racemase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556685|gb|ABD01642.1| alanine racemase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 424

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 176/378 (46%), Gaps = 27/378 (7%)

Query: 5   EFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               ++ID   L+ N   +   L  N    AVVK NAYG G + +AP    AG +   V 
Sbjct: 50  SRAWVEIDAAQLRENLRLLQRRLGSNVEIWAVVKANAYGHGAQLVAPVAVAAGAKGLCVA 109

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
           ++ EG++LR    QA + VL  ++   + +      L   ++   Q+    ++    G  
Sbjct: 110 TLAEGIELRQTGLQAPVLVLGALNTWAELQQAMAARLEVSLTCTDQIPLMRQVARWAGRP 169

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P  + VDTG  RLG+  +EA             +   + SHLA AD+P S V   Q  R
Sbjct: 170 IPVHVNVDTGMTRLGIPWKEAAAVWGQICRIPELEGCSLFSHLATADEPHSPVMEQQHAR 229

Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTV 235
           F  ++   +          L +S+G L     H+   R G+ LYG +   +   P  Q +
Sbjct: 230 FAQVVEQIRQAGDPLPALHLDNSAGALTH--LHYSRVRLGLVLYGLSPAPHLPVPGLQPI 287

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +AR+  I+   A   VSYG +   +R S IA  AIGYADG P  LSG          
Sbjct: 288 LRLKARLSHIQTVPAQTGVSYGHRYITSRPSRIATLAIGYADGIPRRLSGWL-------- 339

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALAS 350
              +G+++G ++  +G ITMD  M+D+T+   I+VGD +++ GP+     + + D A   
Sbjct: 340 ---RGWVRGGLIQQVGTITMDQCMWDVTERPDIQVGDVVELLGPNLANAGLSVQDWADQL 396

Query: 351 GTTNYDLLVRIGTRYAKF 368
           GT +Y+LL  +  R  + 
Sbjct: 397 GTISYELLCGLSARLPRV 414


>gi|148553730|ref|YP_001261312.1| alanine racemase [Sphingomonas wittichii RW1]
 gi|148498920|gb|ABQ67174.1| alanine racemase [Sphingomonas wittichii RW1]
          Length = 378

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 187/374 (50%), Gaps = 34/374 (9%)

Query: 9   LKIDLTALKNNWHSMNAL---------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           L+IDL A+ +N+  +                          YGLG  ++A AL +AG + 
Sbjct: 12  LRIDLDAIIDNYRLIQQRAAPAEVAAVVKADA---------YGLGAARVAAALRDAGCRR 62

Query: 60  FFVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMS 117
           FFV  + E  +LR        I VL G+ PG E    +   +PV++++ Q+  + +   +
Sbjct: 63  FFVAHLVEAARLREAIGDGVEIGVLNGLQPGAETACAELGAVPVLNALDQIERWAALARA 122

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                P  +Q DTG +RLGL+  E               + LI+SHLACAD+P    N  
Sbjct: 123 SSARLPCMIQFDTGMSRLGLAPGEVRALIDRPERLDGLDIRLIMSHLACADEPERASNQH 182

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           Q + F    + + GI  SL +S G LL   +H+ + R GI+LYGG  +    +PM+ VVT
Sbjct: 183 QAQAFDAFCARFPGIPRSLDNSGGALLPRAHHYDVVRAGIALYGGAPQTG-PNPMRPVVT 241

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +AR+I +R    G  V YG   +  R + +A  ++GYADG+P +L              
Sbjct: 242 LDARVIQLRTVEPGTAVGYGLTHRFDRPARLATLSVGYADGWPRSLGNR----------- 290

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G  ++ G+  PI+G+I+MD    D++D     +  G  I++ GP   +DDVA  +GT +Y
Sbjct: 291 GAAYVAGHRAPIVGRISMDSLTIDVSDIPEELLLPGSLIELIGPHQSIDDVARDAGTISY 350

Query: 356 DLLVRIGTRYAKFY 369
           ++L ++G RYA+ Y
Sbjct: 351 EILTQLGHRYARSY 364


>gi|325125145|gb|ADY84475.1| Ala racemase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 376

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 147/382 (38%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    L I+L A+K N     A L    +   VVK NAYG G  ++AP +  AG   F V
Sbjct: 6   NRPAALHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGAARLAPVMEEAGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++EG++LR       I VL      +  +    ++   +SS+  L    K L    + 
Sbjct: 66  AMLDEGLELRRAQIVKPILVLGLQPAEEAALAAANDISLPVSSLDWLKKAEKVLRKEDLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G S  E     +          +  + +H A AD   +     Q++
Sbjct: 126 LKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------INKSHP 231
           RF+ + S    K     + +++  L   +    + R GI LYG           +  +  
Sbjct: 186 RFKHMESLLTVKPKWIHVDNTAASLFDKDVASDIVRFGIGLYGLNPSSAPGSRDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                  K  +     PI+G++ MD  M  +     +  G  +++   D      L   A
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNSLRRAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++  +   R  + Y
Sbjct: 352 DWLDTIHYEVACQFNDRLDRIY 373


>gi|157273511|gb|ABV27410.1| alanine racemase [Candidatus Chloracidobacterium thermophilum]
          Length = 398

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 102/380 (26%), Positives = 160/380 (42%), Gaps = 29/380 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSV 65
              +IDL  L+ N+  +   +G     A+VK NAYG G   +A  L + A    F V + 
Sbjct: 9   AWAEIDLARLRQNYQWLRQQAG-VPVMAMVKANAYGHGLLPVATFLQDVAKADWFGVATP 67

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124
           EEG+ LR       I VL G   GQE  I   +L   +     +    +  S  G S   
Sbjct: 68  EEGIALRRAGITRPILVLGGFWFGQEADIVYYDLATTLPDPAYIPALEQAASRAGRSVAI 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
            L++DTG  RLGLS  +         +    +L  +++H A AD P  +     Q+ R  
Sbjct: 128 HLEIDTGIGRLGLSPDQLTAVLERLKSCSHLRLDGLMTHFASADLPEYADFTRDQIRRHA 187

Query: 184 TLISH-----YKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGT----DKINKSHPMQ 233
             +       ++     LA+S+G+    P     L R G  LYG        +    P Q
Sbjct: 188 LALQQVRAAGWEPRYVHLANSAGLHAFLPEAAGNLVRLGGLLYGIAGDALSPVFPPPPTQ 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++  ARI+ ++   AG  + YG      R + +A   +GY DG     S         
Sbjct: 248 PVLSLHARILGLKTVPAGTPLGYGCTFVTCRPTRVATVPLGYGDGLHRIQSNR------- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
               G+  ++G  VPI+G+++MD TM D+TD  ++ +GD     G      I  ++ A  
Sbjct: 301 ----GQAIVRGRKVPIVGRVSMDTTMLDVTDVPNVTLGDVATFIGRQGETTITAEEYAAV 356

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            G+   +    +  R  ++Y
Sbjct: 357 MGSIALEATTALTARLPRWY 376


>gi|312602482|ref|YP_004022327.1| alanine racemase [Burkholderia rhizoxinica HKI 454]
 gi|312169796|emb|CBW76808.1| Alanine racemase (EC 5.1.1.1) [Burkholderia rhizoxinica HKI 454]
          Length = 356

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 146/347 (42%), Gaps = 22/347 (6%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83
              +  ++  AVVK NAYG G  ++ P L +     F +  +EE VKLR       I +L
Sbjct: 22  RRHASKSKLWAVVKANAYGHGLARVFPGLRS--TDGFGLLDLEEAVKLRELGWAGPILLL 79

Query: 84  YGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142
            G   P    +I   +L   +    QL    ++          L++++G NRLG    + 
Sbjct: 80  EGFFRPTDIDVIDRYSLTTTVHCDEQLRML-EMARLSKPVNIQLKMNSGMNRLGYVAGKY 138

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGI 202
                 +          +++H + A          QLE F        G   SLA+S+  
Sbjct: 139 RAAWERARACPSVGQITLMTHFSDA--DGEMGIRHQLEVFEHGAEGIAG-SRSLANSAAT 195

Query: 203 LLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           L  P  HF   RPGI LYG +        +   +Q  +T  + +I ++    G+ V YG 
Sbjct: 196 LWHPYAHFDWVRPGIILYGASPSGVSAAIEGLGLQPAMTLSSELIAVQTVEPGDSVGYGS 255

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
             K      I V A GYADGYP                G    + G    ++G+++MDM 
Sbjct: 256 AFKARERMRIGVVACGYADGYPRCA-----------PEGTPVQVGGVRTRVVGRVSMDML 304

Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             D++   +  +G  +Q++G D+ +DDVA A GT  Y+L+  +  R 
Sbjct: 305 TVDLSSCPNAVIGSPVQLWGADVPIDDVAAACGTVGYELMCAVAQRV 351


>gi|319893025|ref|YP_004149900.1| Alanine racemase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162721|gb|ADV06264.1| Alanine racemase [Staphylococcus pseudintermedius HKU10-03]
          Length = 382

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 167/382 (43%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S ++ R   +K++L A+  N++++  L  N     VVK NAYGLG  +IA  L   G + 
Sbjct: 2   SEKYYRTTTMKVNLDAITENYYALTKLQPNKTMMPVVKANAYGLGSIQIAQHLSQLGAEF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V +++E ++LR++  + +I +L  I P          +   + S   L   +  +   
Sbjct: 62  FCVATLDEAIELRMHGIKEKILILSSIPPDAINKAIQHRVAVTVPSRAWLEAATAEIDED 121

Query: 120 --VSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    ++VDTG NRLG+   EA  D  +     K        SH   AD+ +   + 
Sbjct: 122 NEKTLWLHIKVDTGMNRLGVKDIEAYHDIINFIHAHKNLVFEGAFSHFHSADEDNDSAH- 180

Query: 177 VQLERFRTLISHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQ 233
           +Q ERF  +I   +      + +S+G L          RPGI+LYG      I K    Q
Sbjct: 181 MQYERFEEIIESTEHPTYIHMQNSAGTLRFNPSLCNAFRPGIALYGYYPSTFIEKIATAQ 240

Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
               V     ++ ++  + GE V YG       D  IA+  IGYADGY  ++ G +    
Sbjct: 241 LVPAVQLVTEVMEVKSLIKGETVGYGQTYTAPEDMTIALLPIGYADGYLRSMQGAN---- 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     I      I+G+++MD T   +    ++++G+ + +          ++ +A
Sbjct: 297 --------VRIGTTECEIVGRVSMDRTAIRVP--ATVQMGEEVILIDDQAHTSQSVESLA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L  IG R  + Y
Sbjct: 347 AQQQTINYEVLCNIGRRVPRVY 368


>gi|78780004|ref|YP_398116.1| alanine racemase [Prochlorococcus marinus str. MIT 9312]
 gi|78713503|gb|ABB50680.1| alanine racemase [Prochlorococcus marinus str. MIT 9312]
          Length = 399

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 181/382 (47%), Gaps = 29/382 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +++   A+++N   +   LS + +  AVVK + YG   + ++      G     V 
Sbjct: 26  QRAWIEVKGKAIESNVRQLRSKLSKSCQFMAVVKADGYGHDAKVVSEYAIKGGASQLGVA 85

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKL-MSCGVS 121
           +++EG+ LR    +  I +L  ++  ++ II F  +L+P ISS+ +    + +    G  
Sbjct: 86  TLKEGIMLRSSGVKKPILILGNLYAKRDLIISFKNDLMPTISSIRECLICNNIGKHFGSK 145

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSV 177
               L+VDTG +RLG    + +       + +   +  I SHL+ AD+ +         +
Sbjct: 146 FSLHLKVDTGMSRLGFESNKFVQQFEKIKSFENISVEGIYSHLSSADEDNSLDPKSSTQI 205

Query: 178 QLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230
           Q  +F+ L+          I+  LA+S+G+L+  ++HF + R G+S+YG +   KI+++ 
Sbjct: 206 QRLKFQELLQQINVDRNHNIKIHLANSAGMLINKDFHFHMVRVGLSMYGYSPLAKIDRNL 265

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +  + ++  IR    G  VSYGG+    R + +AV +IGYADG P  LSG  +  
Sbjct: 266 SLKPALFLKVKVAFIRIIDQGVKVSYGGKFVSGRKTKLAVLSIGYADGVPRNLSGKIN-- 323

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                          + P +G ITMD  M DIT S  I++G  + + G D    I   D 
Sbjct: 324 ---------VIHNNELYPQVGSITMDQMMVDITGSDEIKIGSTMLLLGSDGDKTISPFDW 374

Query: 347 ALASGTTNYDLLVRIGTRYAKF 368
           A  S T  +++L     R  + 
Sbjct: 375 ANQSNTIPWEILCSFKNRLPRV 396


>gi|71907615|ref|YP_285202.1| alanine racemase region [Dechloromonas aromatica RCB]
 gi|71847236|gb|AAZ46732.1| Alanine racemase region [Dechloromonas aromatica RCB]
          Length = 370

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 159/367 (43%), Gaps = 24/367 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M ++  +R +I   A+ +N+      +  ++  AV+K NAYG G  +   AL       F
Sbjct: 1   MKTSRPIRARIAPAAILHNYRLAKRHAPQSKAWAVIKANAYGHGQWRAVDALRGE-ADGF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            +   E  V LR       I +L GI   ++ + + +  L  VI  + QL    +     
Sbjct: 60  ALLECENAVALREAGVTQPILMLEGIFSARDVRAVIEYRLTSVIHCLEQLELLVRNGRFD 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 L+++TG NRLG +                  ++ +++H A A        + QL
Sbjct: 120 TPISVCLKLNTGMNRLGFTAATLPRAWEILQQLPQVDVT-LMTHFADA--DGERGVTWQL 176

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236
           ERF  L   + G   SL +S+ IL  P  H    RPGI LYG +   ++      ++ V+
Sbjct: 177 ERFHDLAGDWAG-PVSLGNSAAILSHPKAHGDWVRPGIMLYGASPFADQSAVDLGLRPVM 235

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+ +I I+   AGE V YGG     R   I V A GYADGYP                
Sbjct: 236 TLESAVIGIQDLAAGERVGYGGTFTADRPMRIGVVACGYADGYPRHA-----------PT 284

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALASGT 352
           G    + G     +G+++MDM   D+TD     +G  + ++G  I      D+VA A+GT
Sbjct: 285 GTPIAVMGRRTRTIGRVSMDMLACDLTDVPEAGIGSPVTLWGLGIAGAVPADEVAAAAGT 344

Query: 353 TNYDLLV 359
             Y+L  
Sbjct: 345 VAYELFC 351


>gi|154500483|ref|ZP_02038521.1| hypothetical protein BACCAP_04155 [Bacteroides capillosus ATCC
           29799]
 gi|150270714|gb|EDM98010.1| hypothetical protein BACCAP_04155 [Bacteroides capillosus ATCC
           29799]
          Length = 715

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 106/381 (27%), Positives = 164/381 (43%), Gaps = 32/381 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +ID +AL +N   +  L        AVVK NAYG G    A    ++GV+ F V +
Sbjct: 346 RAWAEIDRSALVHNISQLTGLLPSGCELMAVVKANAYGHGDVLTARVCMSSGVKAFAVAT 405

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +EEG++LR    +  I +L    P Q + +    L   + S    T+  +L         
Sbjct: 406 LEEGIRLRQAGMKGEILILGWTPPEQAQQLTRWRLSQAVVS---RTYAEELSHSAHRVKV 462

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLER 181
            L VDTG +RLGLS  +          K+L +++ + +HLA ++            QL R
Sbjct: 463 HLAVDTGMHRLGLSWDDGDGLLAVCRLKQL-RVTGLFTHLAFSESLEPDAVGHTREQLHR 521

Query: 182 FRTLI-----SHYKGIEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHPM--- 232
           F         + Y  +     SS G+L  P        RPGI+LYG   + ++       
Sbjct: 522 FYQAADLVISAGYGPVALHALSSYGLLNCPKQAGMAYARPGIALYGVLSRPDEQVGTLPD 581

Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V++  A+I  I     G+   Y G    +  + +A   IGYADGYP +LS       
Sbjct: 582 LRPVLSLRAKIARIHNLEPGDCAGYDGAFAPSASARVAAVTIGYADGYPRSLSN------ 635

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                 GK  I+G   P+ G I MD  + D+T     +  D + + G D    +  ++VA
Sbjct: 636 ----GKGKVLIRGKFAPVAGLICMDQLLVDVTGIPEAQEDDTVTLIGRDGENILTAEEVA 691

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
             +GT   +LL R+G R  + 
Sbjct: 692 RDAGTITNELLSRLGERVTRV 712


>gi|300812106|ref|ZP_07092554.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496945|gb|EFK32019.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 376

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 87/382 (22%), Positives = 149/382 (39%), Gaps = 30/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    L I+L A+K N     A L    +   VVK NAYG G  ++AP +  AG   F V
Sbjct: 6   NRPAALHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGADGFCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
             ++EG++LR       I VL      +  +    ++   +SS+  L    K L   G+ 
Sbjct: 66  AMLDEGLELRRVQIVKPILVLGLQPAEEAALAAANDISLPVSSLDWLKKAEKVLRKEGLQ 125

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLE 180
               L +D+G  R+G S  E     +          +  + +H A AD   +     Q++
Sbjct: 126 LKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYFDYQVK 185

Query: 181 RFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------INKSHP 231
           RF+ + S    K     + +++  L G +    + R GI LYG           +  +  
Sbjct: 186 RFKHMESLLTVKPKWIHVDNTAASLFGKDVASDIVRFGIGLYGLNPSSAPGSQDLEPAFA 245

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  ++  + +  +++   G  V YG       D  I    +GYADG+     G      
Sbjct: 246 LKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF----- 300

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347
                  K  +     PI+G++ MD  M  +     +  G  +++   D      L   A
Sbjct: 301 -------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNSLRRAA 351

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++  +   R  + Y
Sbjct: 352 DWLDTIHYEVACQFNDRLDRIY 373


>gi|329770407|ref|ZP_08261789.1| alanine racemase [Gemella sanguinis M325]
 gi|328836530|gb|EGF86190.1| alanine racemase [Gemella sanguinis M325]
          Length = 375

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 168/382 (43%), Gaps = 27/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M ++   RL ++L AL  N+  +N LS      A+VK N+YGLG + I+  LY  GV+ F
Sbjct: 1   MINDRPTRLIVNLDALLRNYEKLNNLSDKKVGLAIVKANSYGLGSKVISKLLYENGVRHF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCG 119
            V + EE ++L+    ++ I VL   +P   K   + N+     S         +L S  
Sbjct: 61  AVATFEEALELKEVIKESLILVLGVTNPKNVKYAVENNISLTCPSKEWLEEAIKELDSIT 120

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 ++++TG NR+G   ++ +       +    +   + SH + AD  ++  +  Q 
Sbjct: 121 GKLKVHVKIETGMNRIGTFEEKEILEIDELLDYPKVEFEGVFSHYSNADGENNDYDDYQT 180

Query: 180 ERFRTLISHYKGIEA--SLASSSGIL--LGPNYHFQLTRPGISLYGGTDKINKSHPMQ-- 233
             F  L++ +K       + +S+G +     + ++ L+R GISLYG     N     +  
Sbjct: 181 ANFNRLVALFKHKPRYVHIENSAGTVKYNDRDDNYNLSRIGISLYGCYPSKNIEKLNKLE 240

Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
              V +  +++  +++   G  V YG   + + D  IA   IGYADG      G      
Sbjct: 241 LEPVASLVSKVTHVKRIPKGTKVGYGISYETSEDEYIATVPIGYADGLLRRAQGFKLN-- 298

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                     + G    I+G++ MD  M   ++   I+VGD + +FG      I +D+ A
Sbjct: 299 ----------VAGEECEIVGRVCMDQLMVRCSE--KIKVGDDVLVFGEYNNQKISVDEFA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++   I  R  + Y
Sbjct: 347 DYQKTISYEIFCCINQRVPRKY 368


>gi|108803647|ref|YP_643584.1| alanine racemase [Rubrobacter xylanophilus DSM 9941]
 gi|108764890|gb|ABG03772.1| alanine racemase [Rubrobacter xylanophilus DSM 9941]
          Length = 365

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 165/381 (43%), Gaps = 32/381 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M     +  ++DL A+++N  ++   S   R  AVVK +AYG G   +A A    G    
Sbjct: 1   MEVPGRVWAEVDLGAVRHNVRTLRRRSRAPRLMAVVKADAYGHGAVPVARAALAGGADSL 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V +  EG +LR    +A + V   + P   +      L     SVP      ++ + G+
Sbjct: 61  AVATAGEGAELRRAGIRAPVLVFGDLTPEGLRAAARERLAVSAHSVPS---ARRIAASGL 117

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L+VDTG NR GL   E                  + +HLACA D        QL 
Sbjct: 118 DLEVHLKVDTGMNRWGLEPGEVGAALKALGRTP----DGVYTHLACA-DSDPEATGRQLA 172

Query: 181 RFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QT 234
            F ++++ +   G  A  A+S+G L  P  H+   RPGI+LYG     +   P     + 
Sbjct: 173 LFDSVLAAHPFGGALAHAANSAGTLWHPGSHYGCVRPGIALYGLHPAGDAGDPAAEGLRP 232

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  ++ +  +R+   GE VSYG   +     L A   +GYADGY   LSG         
Sbjct: 233 ALALKSYVAAVRRLEPGEGVSYGLTFRAPEPMLAATVPVGYADGYRRALSGR-------- 284

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               +  I+G   P+LG+++MD  +F       + VGD + + G      ++ +++A  +
Sbjct: 285 ---AEALIRGRRRPLLGRVSMDACVF--AADREVRVGDEVVLLGEQGGGAVRAEELAARA 339

Query: 351 GTTNYDLLVRIGT-RYAKFYT 370
           GT NY++   +   R  + Y 
Sbjct: 340 GTINYEITTGLNPRRVERSYA 360


>gi|21674734|ref|NP_662799.1| alanine racemase [Chlorobium tepidum TLS]
 gi|25452782|sp|Q8KB67|ALR_CHLTE RecName: Full=Alanine racemase
 gi|21647945|gb|AAM73141.1| alanine racemase [Chlorobium tepidum TLS]
          Length = 383

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 105/363 (28%), Positives = 165/363 (45%), Gaps = 27/363 (7%)

Query: 11  IDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L++N   + A++    R   +VK NAYG G  ++   L   GV+DF V ++ E +
Sbjct: 23  ISLGNLRHNLACIRAITGPQCRVMGIVKANAYGHGATQVTATLEAEGVRDFGVANIYEAI 82

Query: 70  KL----RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPY 124
           +L    R+  P +RI        G   +     +   +          S   +CG     
Sbjct: 83  ELLQEHRML-PDSRILAFASPLAGHIDLYLQHGVEMTVCDHETARAAESIAAACGRRLQV 141

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG  RLG++ +EA +           +L+ I +H A +D P     + QLERF  
Sbjct: 142 QLKVDTGMGRLGVTPEEAAELLELIEACPNLELTGIYTHFAESDKPEG-FTARQLERFLH 200

Query: 185 LISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVT 237
           +   Y     K +    A+S  I+  P+    + RPGI LYG           P++ V+ 
Sbjct: 201 VTGAYERRTGKTVTKHAANSGAIISMPDARLDMVRPGILLYGCHPVDAAPSTVPVRPVMQ 260

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++R+I +++  AG  +SY       + + IA  + GYADG+   LS             
Sbjct: 261 FQSRVIFVKEVPAGTAISYNRTWSAPKATRIATISAGYADGFHRALSNQ----------- 309

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYD 356
            +  I G   P +G ITMD TM ++    S++VGD   +FG D     + ALA+GT +Y+
Sbjct: 310 ARVSIGGKSFPQVGTITMDQTMVNLGSDDSVKVGDTAVLFGWDGPSAGEQALAAGTISYE 369

Query: 357 LLV 359
           LL 
Sbjct: 370 LLC 372


>gi|313672870|ref|YP_004050981.1| alanine racemase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939626|gb|ADR18818.1| alanine racemase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 365

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 175/377 (46%), Gaps = 29/377 (7%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP-ALYNAGVQD 59
           N  LR     IDL    NN +    LS  +    V+K N YG G  ++A   L ++ ++ 
Sbjct: 2   NRSLRGTYALIDLKRYLNNLNIARKLS-KSYITPVIKANGYGHGAIELARFTLEHSDIRI 60

Query: 60  FFVTSVEEGVKLRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLM 116
           F V + EEGVKLR Y     A I VL  +       +   NL+  I        F   L 
Sbjct: 61  FCVATFEEGVKLR-YGIGESAEIIVLGFVDEYFFNEVITNNLLINIYDDEIAFRFNKYLE 119

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              + +P ++++DTG NRLG  +   ++F             +++SHL+   D      S
Sbjct: 120 KKRLKYPVSIKIDTGMNRLGFDVS--INFIEFREKYPNLVPKVLMSHLSS-PDSDLDYTS 176

Query: 177 VQLERFRTLISHYKGI----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           +Q++RF ++    K I    + SL +S  +L   N  F  +RPGI  YG   K +    +
Sbjct: 177 LQIDRFSSVAERAKKIFPYIKTSLFNSPALLSFENS-FDYSRPGILTYGFV-KSDHDIGI 234

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+   ++II ++     E V Y       + +++ V  IGYADGY   LS        
Sbjct: 235 KPVMKIFSKIIHVKSLDKNESVGYNRTYITGKKTILGVLPIGYADGYNRLLSNR------ 288

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                G  ++ GY  PI+G+I MDMTM DI+D    + G  ++I G +I+ D++A    T
Sbjct: 289 -----GFVYVDGYKCPIVGRICMDMTMIDISDLPEGKWGKEVEILGDNIRADEMAKMCNT 343

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y++L  I  R  + Y
Sbjct: 344 ISYEILTSISPRIPRIY 360


>gi|170750293|ref|YP_001756553.1| alanine racemase [Methylobacterium radiotolerans JCM 2831]
 gi|170656815|gb|ACB25870.1| alanine racemase [Methylobacterium radiotolerans JCM 2831]
          Length = 364

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 135/364 (37%), Positives = 196/364 (53%), Gaps = 15/364 (4%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RL IDL A+  NW  + A    A  AAVVK +AYG G  ++ PAL+ AG + FFV  + 
Sbjct: 15  ARLTIDLGAIAANWRILAARGAGADCAAVVKADAYGCGIGRVGPALWAAGCRTFFVAHLS 74

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           EGV  R   P+A I+VL G+  G         L PV+ S  +L+ ++     G   P AL
Sbjct: 75  EGVAARAALPEAAIYVLNGLPLGAAAAFAAHGLRPVLGSAEELSDWAAF--AGNRPPAAL 132

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDTG NRLGLS+ EALD   ++   + G + L++SH   A+ P   VN+ Q+  F  + 
Sbjct: 133 HVDTGMNRLGLSVPEALDLAGDARIAEAG-IDLLLSHFVSAETPDDPVNARQIADFARVR 191

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + Y G+ ASLA+SSGI L       L RPG +L+GG      ++PM+ VV  EA I  +R
Sbjct: 192 AAYPGLRASLANSSGIFLD-GARHDLLRPGYALFGGNPTPGAANPMRPVVRLEATIAQVR 250

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG    Y G+   T  S +A  ++GYADG+P ++SG            G+  + G  
Sbjct: 251 GVAAGATAGYNGRWTATAPSRLATLSLGYADGFPRSISGR-----------GQALVGGVP 299

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            PILG ++MD+ + D+T + +   G    + G  + +D V  A+GT  Y++L  +G+RY 
Sbjct: 300 CPILGSVSMDLIILDVTAAPAARRGAAAVLIGDRLDIDTVGRAAGTIGYEILTGLGSRYV 359

Query: 367 KFYT 370
           + Y 
Sbjct: 360 RTYV 363


>gi|296532301|ref|ZP_06895040.1| alanine racemase [Roseomonas cervicalis ATCC 49957]
 gi|296267377|gb|EFH13263.1| alanine racemase [Roseomonas cervicalis ATCC 49957]
          Length = 370

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 178/364 (48%), Gaps = 23/364 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             L +DL A+  NW  + A   +   A VVK + YGLG   +A AL  AG + FFV    
Sbjct: 26  AELLVDLGAIVANWRDLAARHASGPVAGVVKADGYGLGAAPVARALAAAGCRHFFVAQFA 85

Query: 67  EGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG+ LR        + VL G  PG +      +L PV++        ++  + G      
Sbjct: 86  EGLALRQALGHGPMVAVLGGFPPGADDGA---DLTPVLN---APADLAEARAAGRRGAI- 138

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L  DTG  RLGL+  E       + +     L  +++HLACAD+P   +N+ Q  RF  +
Sbjct: 139 LHADTGMERLGLNAAE----LAAAGDLSDLGLRYVMTHLACADEPGHPLNAQQAARFAAV 194

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +   G+ AS A+SSG+ LG  +   L RPG +LYG      + +PM+ V+     I+ +
Sbjct: 195 RAGLPGLPASFANSSGLFLGEGFASDLARPGCALYGINPTPGQPNPMRPVLRLTVPILQL 254

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AG  V YG      RDS IA  A GYADGY   LS             G   + G 
Sbjct: 255 REVPAGTSVGYGASWVAKRDSRIATIAAGYADGYLRVLSNQ-----------GVATLHGQ 303

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VP++G+++MD+   D+TD+     GD +++ GP    D VA  +GT  Y++L  +G RY
Sbjct: 304 DVPLVGRVSMDLITLDVTDAPEARPGDRVELIGPRQTPDAVAALAGTIGYEILTSLGARY 363

Query: 366 AKFY 369
            + Y
Sbjct: 364 RRRY 367


>gi|114704797|ref|ZP_01437705.1| alanine racemase [Fulvimarina pelagi HTCC2506]
 gi|114539582|gb|EAU42702.1| alanine racemase [Fulvimarina pelagi HTCC2506]
          Length = 396

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 209/372 (56%), Gaps = 10/372 (2%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R++ID  ALK NW ++ ++  NA+T A VK + YGLG  +++ AL+ AG ++FFV  
Sbjct: 26  RLPRVEIDRGALKRNWAALASIHPNAQTGAAVKADGYGLGAVEVSRALFEAGCRNFFVAW 85

Query: 65  VEEGVKLRLYT----PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119
            EEG  +R         AR+FVL G+ P   + + D +L+PV+SS   LT +++ L +  
Sbjct: 86  PEEGQIVRSALAPKNKNARVFVLQGMEPAAVRFLTDHDLVPVLSSPDDLTIWTEGLTALA 145

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              P ALQ++TG NRLGL  +  L            +++L+++HLA A D S   +  Q 
Sbjct: 146 RRAPAALQLETGMNRLGLD-ERGLGKAMALVEAGELEVALLLTHLASA-DVSPEDSEAQR 203

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            RF  + + +  I  SLA+S+G++ G ++   LTRPGI+LYGG   +      + V    
Sbjct: 204 IRFSAMSARFPYISRSLANSAGLVCGESFGLDLTRPGIALYGGMGCLGGLIATEPVARLS 263

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A +I +R+  AGE V Y G  +LTR ++IA   IGY DGY   LSG              
Sbjct: 264 AAVIQVREVEAGEKVGYAGAARLTRRTIIATLGIGYGDGYLRALSGAGVPLRMDRPAASA 323

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
             I G  VP+LG+I+MD+T+ D+TD    S+  GD  ++FGP++ +D VA A+GT  Y+L
Sbjct: 324 V-ISGCAVPVLGRISMDLTLLDVTDLPAGSVRPGDRAELFGPNMPIDKVAEAAGTIPYEL 382

Query: 358 LVRIGTRYAKFY 369
           L  +G R  + +
Sbjct: 383 LTGLGPRVQRVW 394


>gi|15645557|ref|NP_207733.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori 26695]
 gi|3913027|sp|O25595|ALR_HELPY RecName: Full=Alanine racemase
 gi|2314079|gb|AAD07986.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori 26695]
          Length = 377

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 170/381 (44%), Gaps = 32/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++D  +L++N+ ++ ++   +A   AVVK NAYG G  K +      G     V +++E
Sbjct: 8   VEVDTASLRHNFSAVKSIVPKDACVMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            ++LR +  +  I +L         ++ D +L  +I S+ Q   +S+  +         +
Sbjct: 68  ALELRSHFSKTPILILGYSPNANASMLVDNDLSAMIFSLEQAEVFSQMALKSQKRLKVHI 127

Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLGL    ++++        K  ++  I +HL+ AD         Q++ F   
Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNAF 187

Query: 186 ISHY--KGIE---ASLASSSGILLGPNYH----FQLTRPGISLYGGTDK--INKSHPM-- 232
           +     + IE       +S+GIL   N +      L RPGI LYG      + +S P   
Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKESCPTIL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++ +A+I+ IR    GE + YG       ++L+ V A+GYADG    L         
Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                 +  I   + P++GK+ MD     + +++  + GD + +FG          ++  
Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NNIQAKEGDEVILFGDKSAKANDASEIXA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T  Y+ +  +  R  + Y
Sbjct: 356 LLNTIAYETISTLSKRLERVY 376


>gi|326794048|ref|YP_004311868.1| alanine racemase [Marinomonas mediterranea MMB-1]
 gi|326544812|gb|ADZ90032.1| Alanine racemase [Marinomonas mediterranea MMB-1]
          Length = 373

 Score =  340 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 97/378 (25%), Positives = 169/378 (44%), Gaps = 27/378 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L+  IDL A+K N+     L    +  AVVK +AYG G   +A  L +  V  F V +
Sbjct: 3   RPLKAIIDLEAIKINYQFSKKLHPTCKALAVVKSDAYGHGAVDVATYLDD-DVDAFAVAA 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR     + I +L G+    +  +  +     VI +  QL     L +      
Sbjct: 62  IEEALQLREADVTSPILLLEGVFEQNEWPLCEELGFWCVIENTTQLDGL--LNAQSKIEK 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++DTG +RLGL+  +            L +  ++++H +CADD SS     QL  F 
Sbjct: 120 VFVKLDTGMHRLGLNSLQVEHVVDTLKASGLVEEVVLMTHFSCADDLSSLETIKQLTLFE 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240
                   +  S+A+S+ I+          RPGI LYG +  +  +     ++  +   +
Sbjct: 180 EANRTVGHLTTSVANSAAIMKWSVPEGGWIRPGIMLYGISPFVGVTGTQLGLKPAMQLVS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I +R    G+ V Y  Q        IA  A+GY DGYP +              G   
Sbjct: 240 KVISVRDVNIGDTVGYSQQYTAEHPHQIATVAVGYGDGYPRSSEN-----------GTPV 288

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLS---------IEVGDYIQIFGPDIKLDDVALASG 351
            + G    + G+++MDM    +++  S         I++G+ ++++G  + +++VA  SG
Sbjct: 289 ALSGDTAELAGRVSMDMITVKLSNQASSERPHQERKIQLGEEVELWGEQVPVEEVAYRSG 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+L+ R+  R  + Y
Sbjct: 349 TIGYELVTRMTQRPMREY 366


>gi|226305403|ref|YP_002765361.1| alanine racemase [Rhodococcus erythropolis PR4]
 gi|226184518|dbj|BAH32622.1| alanine racemase [Rhodococcus erythropolis PR4]
          Length = 400

 Score =  340 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             +DL A+ +N   +   +G+A   AV+K + Y  G   +A    +AG ++  VT++ E 
Sbjct: 30  AVVDLDAIAHNVRVLREFAGDAALMAVIKADGYNHGAVAVARTALSAGARELGVTTIAEA 89

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-YSKLMSCGVSHPYALQ 127
           + LR     A +                +++   +SS   L          G      L+
Sbjct: 90  LVLREAGITAPVLAWLHGLDADFSSAIRSDVEIGVSSPRHLAAVVDAARVLGQQATVTLK 149

Query: 128 VDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VDTG NR G+S     + LD    + ++   +L  + SHLA +D+P   V  +Q +R   
Sbjct: 150 VDTGLNRNGVSRTEWPQMLDDLATARDEGTIRLRGVFSHLAHSDEPHHDVIDMQKQRLIE 209

Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTA 238
            +       ++     L++S+  +  P+  F + RPGI++YG +         ++  +T 
Sbjct: 210 AVVDVRARGFEPEVVHLSNSAATVTRPDLQFDMVRPGIAIYGLSPVPELGDFGLRPAMTL 269

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A++IL++K  AGE VSYG Q     D+ +A+  +GYADG   +LSG             
Sbjct: 270 RAKVILVKKVAAGEGVSYGHQWVAPHDTTLALLPVGYADGLTRSLSGKF----------- 318

Query: 299 KGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353
           +  + G     +G+I MD  + D+  D   +  GD    FG     +      A    T 
Sbjct: 319 EVQLGGKRRQAVGRICMDQVLVDLGPDGDGVREGDTAIFFGNGDHGEPNAQAWADVLDTI 378

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y+++  I  R  + Y
Sbjct: 379 HYEVVTGIRGRTVRTY 394


>gi|229821553|ref|YP_002883079.1| alanine racemase [Beutenbergia cavernae DSM 12333]
 gi|259710063|sp|C5BZY7|ALR_BEUC1 RecName: Full=Alanine racemase
 gi|229567466|gb|ACQ81317.1| alanine racemase [Beutenbergia cavernae DSM 12333]
          Length = 378

 Score =  340 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 100/381 (26%), Positives = 156/381 (40%), Gaps = 27/381 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R  +DL A+  N   +  ++G A   AVVK +AYG G   +A A   AG     V  +
Sbjct: 4   PARAVVDLGAIAGNVARLREVAGPAEVMAVVKGDAYGHGLVPVARAALGAGATWLGVAQL 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
            E + LR     AR                  +L   +++              GV    
Sbjct: 64  GEALTLRAAGVDARTLTWLYAPGAPLAEALRADLDLSVAAPWALDEVVGAARESGVVARV 123

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L+VDTG  R GL L E    LD    +       +  + SHLA ADD  S + + Q   
Sbjct: 124 HLKVDTGMGRSGLFLDEWGGLLDAAVRAQAAGEIDVVGVWSHLASADDAESGLTAEQTRV 183

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQ 233
           F   +   +   A      LA+S+G L     HF L RPGI++ G +   +++     + 
Sbjct: 184 FAEAVRRAEDAGAHLEVRHLANSAGTLAHAATHFDLVRPGIAVVGLSPFGDRTADELGLT 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +  EA + +++ A AG+ VSYG +   +  + +AV  +GYADG P    G        
Sbjct: 244 PAMRLEAELTIVKHAPAGQGVSYGHEYTTSEATSLAVVPLGYADGIPRHAGG-------- 295

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
               G   +      I G++ MD  + D+    +   GD   +FG     +    D A A
Sbjct: 296 ---AGPVQVGDTWSRIAGRVCMDQFVLDLGAGANAHAGDVAVLFGSGADGEPTAADWARA 352

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           + T  Y+++ R+G R  + + 
Sbjct: 353 ADTITYEIVTRLGPRVPRVHV 373


>gi|169349572|ref|ZP_02866510.1| hypothetical protein CLOSPI_00299 [Clostridium spiroforme DSM 1552]
 gi|169293647|gb|EDS75780.1| hypothetical protein CLOSPI_00299 [Clostridium spiroforme DSM 1552]
          Length = 369

 Score =  340 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 166/373 (44%), Gaps = 22/373 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M  +      I+L  LK N  ++           AV+K +AYG G +++A  + +   ++
Sbjct: 13  MSLHRDTYAMINLKYLKENIETIYKRFKRP--LMAVIKADAYGHGYKEVASYIKDLEYIE 70

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            F V +++E ++LR       I +L  +     + ++    ++   + S+  +     L+
Sbjct: 71  MFAVATLQEAIELRELGITKGILILGAVPTTKEEIELAISYDISLTMISLEYMYHLQTLI 130

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           S        +++DTG  R+GL+ ++ L+    + +++   L  I +H A AD   +    
Sbjct: 131 S-NKPLKIHIKLDTGMQRIGLTNKKELEEMLQTIDRRKFILEGIFTHYATADGEEAAFVK 189

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
            Q + F  L+  ++       +S+ +    +    L R GI +YG     N+S   + V+
Sbjct: 190 QQ-QLFYKLVGQHEFKYIHCCNSAAMAYHQDNKSNLGRIGIVMYGIDPAGNESDYYKQVM 248

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   R+ +++K  AG  V YG      +D  +A   IGYADG      G           
Sbjct: 249 SLFTRVSMVKKIKAGSRVGYGLTYTAKQDEYLATLPIGYADGIIRKNQGR---------- 298

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
             + +I G    I+G++ MD  M  + +  S++VGD ++IFG  I L  +A    T  Y+
Sbjct: 299 --RVYINGKYFEIVGRVCMDQMMVRVDE--SVKVGDKVEIFGDHISLASMAKDLDTIPYE 354

Query: 357 LLVRIGTRYAKFY 369
           ++  I  R  + Y
Sbjct: 355 IICLISKRVERIY 367


>gi|118465728|ref|YP_883507.1| alanine racemase [Mycobacterium avium 104]
 gi|20141183|sp|Q9L888|ALR_MYCAV RecName: Full=Alanine racemase
 gi|166969418|sp|A0QKR9|ALR_MYCA1 RecName: Full=Alanine racemase
 gi|118167015|gb|ABK67912.1| alanine racemase [Mycobacterium avium 104]
          Length = 388

 Score =  340 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 167/379 (44%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+++N   +   +  A+  AVVK + YG G  + A A   AG  +  V +V
Sbjct: 13  LAEALVDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATV 72

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR     A +           +      +   +SS  Q     + +   G +   
Sbjct: 73  DEALALRAAGISAPVLAWLHPPGIDFRPALLAGVQIGLSSQRQLDELLTAVRDTGRTATV 132

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            ++VDTG NR G+   +    L     +  ++      ++SH+  AD P++ VN VQ +R
Sbjct: 133 TVKVDTGLNRNGVPPAQYPSMLTALRRAVAEQAIVPRGLMSHMVYADQPANPVNDVQAQR 192

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTV 235
           F  +++  +  G+    A L++SS  +  P+  F + RPGI++YG +         +   
Sbjct: 193 FTDMLAQAREQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYGLSPVPELGDMGLVPA 252

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + L++   AGE VSYG      RD+ +A+  +GYADG   +L G          
Sbjct: 253 MTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRL-------- 304

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DIKLDDVALAS 350
              +  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A   
Sbjct: 305 ---QVSINGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADLL 361

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+++     R  + Y
Sbjct: 362 GTIHYEVVTSPRGRITRTY 380


>gi|111220586|ref|YP_711380.1| alanine racemase [Frankia alni ACN14a]
 gi|111148118|emb|CAJ59786.1| Alanine racemase [Frankia alni ACN14a]
          Length = 387

 Score =  340 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 158/385 (41%), Gaps = 29/385 (7%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S       ++L A++++  ++ A +G+A T AVVK + YG G    A A  +AG      
Sbjct: 15  SEPRTYAAVELDAVRDSVAALAARAGDAATMAVVKADGYGHGMIPCARAALDAGASWLGT 74

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVS 121
             +EE + LR     A +         +        +    S S       +     G  
Sbjct: 75  AVLEEALALRAAGITAPVLCWLATPGERFGEAISAGIDVSASASWTLTEIAAAARLAGRP 134

Query: 122 HPYALQVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L+ DTG  R G    +     D       + + +   + SH A AD P       Q
Sbjct: 135 ARVHLKADTGLGRAGAMPGDWPGLCDQAAALQAEGVIEAFGVWSHFAFADAPGHATVQAQ 194

Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM- 232
           +  FR  +     +        LA+S+  L+ P  HF L RPG+S+YG +       P  
Sbjct: 195 IGAFRDAVDIAEKAGLAPTVRHLANSAATLVSPEAHFDLVRPGVSVYGLSPGPEVGPPAR 254

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  ++  +   L+++  AG  VSY  +    R++ +A+  +GYADG P   +     
Sbjct: 255 FGLRPAMSLVSHAALVKRVPAGTGVSYAHRYTTARETTLALVPLGYADGIPRAATNT--- 311

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                   G+    G    I G + MD  + D+ D   +  GD +++FGP    +   DD
Sbjct: 312 --------GEVLFGGRRRRIAGTVCMDQFVLDVGDD-EVAAGDEVRLFGPGDLGEPTADD 362

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
            A+A GT NY+++ RIG R  + Y 
Sbjct: 363 WAVALGTINYEIVTRIGQRVPRVYV 387


>gi|182414552|ref|YP_001819618.1| alanine racemase [Opitutus terrae PB90-1]
 gi|177841766|gb|ACB76018.1| alanine racemase [Opitutus terrae PB90-1]
          Length = 382

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 167/377 (44%), Gaps = 28/377 (7%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +IDL AL+ N   + A L  + R  AVVK +AYG G  + A  L +AG   F V ++ 
Sbjct: 13  WAEIDLAALERNLRLIRASLPAHMRYVAVVKADAYGHGLPQTAARLMHAGADLFAVATLA 72

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           E   +R   P   + +L  + P +++ + + +L   +SS+ ++  +       G      
Sbjct: 73  EAATVRELGPGWPVLLLSPLLPEEDRYLAEYDLTATVSSIEEVDRFEAAGRVAGRVISVH 132

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++DTG  RLG+  ++      +       +L+ + +H A  ++  +   S Q  RF   
Sbjct: 133 LKIDTGMGRLGVWHEQTASVYEHLARAPHLRLAGVFTHFAAPEE--AAFTSEQRRRFLAA 190

Query: 186 ISHYKGIE-----ASLASSSGIL-LGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVV 236
           ++  +GI          +S+GI  +     F   R G+  +G     N        + V 
Sbjct: 191 LAACQGIPLDSIFVHADNSAGIETMSSATPFNAVRIGLLQFGILPHPNSLLSEVHTEPVF 250

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   R+ L++   AG  +SYG    L R + IA+   GY DG P  +S            
Sbjct: 251 SFLTRVGLVKSLPAGYTISYGRTYTLGRPTRIAILCAGYGDGIPRAVSNR---------- 300

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
             +  I+G   P+LG++TMD T+ DITD+  +  GD   I G     +I + + +  + T
Sbjct: 301 -AQVLIRGTRCPVLGRVTMDQTIVDITDAGDVRCGDEAVIVGRQDQAEISIAEFSTWADT 359

Query: 353 TNYDLLVRIGTRYAKFY 369
             ++ L  I  R  + Y
Sbjct: 360 IPWETLCSITKRVPRVY 376


>gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485]
 gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485]
          Length = 811

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 162/375 (43%), Gaps = 25/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               + +DLTA+ +N  ++   +G      V+K + YG G  ++A A   AG +   V +
Sbjct: 447 RPTWVHLDLTAIADNVRALRHHTG-VPLMVVLKGDGYGHGAARVARAALAAGAEMVAVAT 505

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           V EG  LR     A I VL    P Q       +L+  +         S      G    
Sbjct: 506 VGEGRSLRAQGISAPILVLGYTPPWQVAEAIRLDLMVTLFDDDTAQALSAAALELGRPAR 565

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VDTG  RLG+S      F +   +    +   + +H A AD+        QL+  +
Sbjct: 566 VHIKVDTGMARLGVSPAAVGPFLYYLRDLPGIEPVGLYTHFARADEADPEPTKHQLQLLQ 625

Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVV 236
           T+++       +      A+S+  L  P  +F + RPG++ YG   +  +     M   +
Sbjct: 626 TVLAEITAAGLRPPLVHAANSAATLRFPMTYFDMVRPGLACYGIAPSPVVPLLPGMHPAL 685

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + +  +R+  AG  +SYGG    +R S IA   +GYADG   +              
Sbjct: 686 SFYSEVAQVREHPAGTPISYGGAYVTSRPSRIATIPVGYADGLRRS------------PA 733

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             +  I+G   PI+G+I MD  M D+TD   ++ GD + I G      I +D++A   GT
Sbjct: 734 WREVLIRGRRAPIVGRICMDYAMVDVTDIPGVQRGDPVTIIGRQGEEVIGVDEIAGWLGT 793

Query: 353 TNYDLLVRIGTRYAK 367
            +Y++L  I  R  +
Sbjct: 794 ISYEVLTGILPRVPR 808


>gi|254776802|ref|ZP_05218318.1| alanine racemase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 391

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 167/379 (44%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+++N   +   +  A+  AVVK + YG G  + A A   AG  +  V +V
Sbjct: 16  LAEALVDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATV 75

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR     A +           +      +   +SS  Q     + +   G +   
Sbjct: 76  DEALALRAAGISAPVLAWLHPPGIDFRPALLAGVQIGLSSQRQLDELLAAVRDTGRTATV 135

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            ++VDTG NR G+   +    L     +  ++      ++SH+  AD P++ VN VQ +R
Sbjct: 136 TVKVDTGLNRNGVPPAQYPSMLTALRRAVAEEAIVPRGLMSHMVYADQPANPVNDVQAQR 195

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTV 235
           F  +++  +  G+    A L++SS  +  P+  F + RPGI++YG +         +   
Sbjct: 196 FTDMLAQARAQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYGLSPVPELGDMGLVPA 255

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + L++   AGE VSYG      RD+ +A+  +GYADG   +L G          
Sbjct: 256 MTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRL-------- 307

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DIKLDDVALAS 350
              +  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A   
Sbjct: 308 ---QVSINGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADLL 364

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+++     R  + Y
Sbjct: 365 GTIHYEVVTSPRGRITRTY 383


>gi|83953866|ref|ZP_00962587.1| alanine racemase [Sulfitobacter sp. NAS-14.1]
 gi|83841811|gb|EAP80980.1| alanine racemase [Sulfitobacter sp. NAS-14.1]
          Length = 344

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 191/363 (52%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW ++N ++G   T AV+K NAYGLG +++AP L   G + FFV   EEG
Sbjct: 6   LSIDLNAIAANWQALNKMTG-CDTGAVIKANAYGLGIDRVAPVLAAQGARKFFVAVAEEG 64

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR    P   I V  G  PG   +I    L P+I+SV Q+      +     H + +Q
Sbjct: 65  VALRRVLGPGPAINVFAGHMPGDADMIRSAALTPMINSVDQM---IAHVEALPGHRFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG+   E       +  +     +LI+SHLACAD+P+  +N+ QL+ FR +  
Sbjct: 122 LNSGMNRLGMDPAEWAALRDIALAQN---PTLIMSHLACADEPNHPMNARQLKTFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GI+LG +YHF LTRPGI +YGG    +       VVT +  +I +R+
Sbjct: 179 GL-NVPRSLAATGGIMLGRDYHFDLTRPGIGVYGGLPFADA----MPVVTLDVPVIQVRE 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YG      R +++A  A GYADG    L             G     +G  +
Sbjct: 234 VATGQTVGYGCAWTAPRPTMVATVAAGYADGLIRALGN-----------GATFTHEGRKL 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+++MD+   D+T    +    ++Q+ G    +D VA  +GT  Y++L  +G RY +
Sbjct: 283 PVVGRVSMDLITVDVTSLTEVPE--HLQLIGNYQSVDTVAGFAGTIGYEVLTALGARYDR 340

Query: 368 FYT 370
            Y 
Sbjct: 341 VYV 343


>gi|167646468|ref|YP_001684131.1| alanine racemase [Caulobacter sp. K31]
 gi|167348898|gb|ABZ71633.1| alanine racemase [Caulobacter sp. K31]
          Length = 360

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 137/366 (37%), Positives = 192/366 (52%), Gaps = 14/366 (3%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           E  RL +DL AL +N   + A +G A  A  VK + YGLG   +A  L++ G + F+V  
Sbjct: 3   ETSRLTLDLDALASNHAVLRAAAGGAEIAPAVKADGYGLGAALVAGRLWDEGARSFYVAR 62

Query: 65  VEEGVKLRLYTPQ--ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           + EG+ LR       A I++L G+ PG    I   +L PV++S+PQ+  ++     G + 
Sbjct: 63  LSEGLALRRALGDRAAAIYLLDGVTPGSAPAIEGASLTPVLNSLPQVEAWNSHAR-GRAL 121

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             AL +DTG NRLGL  +EA          K   ++L+ISHLACA +P   +N+ QL RF
Sbjct: 122 DAALHIDTGMNRLGLRPEEAAVLVAAMDRLKHVNITLVISHLACASEPDHPLNARQLARF 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
               + +     SLA+S GI LG  YHF   RPGISLYGG  +      +Q VVT EA +
Sbjct: 182 TEAAALFPNARRSLANSGGIFLGDPYHFDQCRPGISLYGGGPRDIPDTRIQAVVTLEAPV 241

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +  R    GE + YG        + +A+ A GYADG P                 G  + 
Sbjct: 242 LQTRVVPRGESIGYGAAFTAQETTRVAILAAGYADGVPRAA-----------HPRGAVWF 290

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G   P+LG+++MD+   DITD  +   G  +QI GPD+ +DD A A+GTT Y+LL RI 
Sbjct: 291 DGARRPMLGRVSMDLIAVDITDCDAARPGAMMQILGPDVLVDDAAAAAGTTAYELLTRIA 350

Query: 363 TRYAKF 368
            R  + 
Sbjct: 351 PRARRV 356


>gi|317485550|ref|ZP_07944427.1| alanine racemase [Bilophila wadsworthia 3_1_6]
 gi|316923230|gb|EFV44439.1| alanine racemase [Bilophila wadsworthia 3_1_6]
          Length = 384

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 107/378 (28%), Positives = 172/378 (45%), Gaps = 32/378 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + + L  L++N  ++  L+ +     V+K +AYG G   +A  L   G+Q   V SV EG
Sbjct: 8   ITVHLENLRHNLKTL--LARHPSLMPVIKADAYGHGVVAVARVLAEEGIQHMAVGSVGEG 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFY---SKLMSCGVSHPY 124
             LR     A +  L G+   ++  +    ++ P++ S   L      S L         
Sbjct: 66  ALLRQEGHTAFLLALMGLARDEDTALAASYDITPLVHSRESLERILAQSHLTGRAKPLTV 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           A++ DTG +RLG  + EA +        K  +  L++SHLA +D P+       Q  RF 
Sbjct: 126 AIKFDTGMSRLGFRVDEAAELADYLRTLKEVRPVLVMSHLAASDTPALDDFTHEQARRFH 185

Query: 184 TLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQT 234
                    + G++ SL +S G+L  P+Y   L RPG++LYGG       +      +  
Sbjct: 186 EATESMKAVFPGLKTSLTNSPGLLCWPSYVGDLARPGVTLYGGNPLHGTDRAKLGMGLLP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   A ++ +   + G  VSYG      +D   AV   GYADGYP +LS          
Sbjct: 246 VMEMAAPVLSVHPVVKGATVSYGCLYTAPKDIRAAVVGAGYADGYPRSLS---------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
            + G   I+G   PILG++ M M + D+TD   +E GD   + G      I+ +++A   
Sbjct: 296 -MRGSVLIRGQRAPILGRVCMQMCIVDVTDIPGVEPGDTAYLLGGSGPLAIRPEELAEWW 354

Query: 351 GTTNYDLLVRIGTRYAKF 368
           GT +Y++   +G R  + 
Sbjct: 355 GTISYEVFCALG-RNRRV 371


>gi|291617673|ref|YP_003520415.1| DadB [Pantoea ananatis LMG 20103]
 gi|291152703|gb|ADD77287.1| DadB [Pantoea ananatis LMG 20103]
          Length = 356

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 161/377 (42%), Gaps = 40/377 (10%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +   ID  AL++N   +   +  +R  +VVK NAYG G  ++  +L       F + 
Sbjct: 2   SRPIVATIDQQALRHNLAIVRRAAPTSRVWSVVKANAYGHGIARVWESLSA--TDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G     +  + D   L   + S  Q      L +  +S 
Sbjct: 60  NMEEAILLREQGWKKPILLLEGFFHPDDLALIDRYRLTTSVHSNWQ---IHALANATLSA 116

Query: 123 PYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           P    L++++G NRLG   ++     H     +      +++H A A++P   V    L+
Sbjct: 117 PVDLYLKINSGMNRLGFRPEQVNGIWHKLRALENVGDITLMAHFADAENPDGIV--EPLK 174

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R             SL++S+  L  P  H+   RPGI LYG +   N     S  ++ V+
Sbjct: 175 RIAQATEGLDS-PVSLSNSACTLWHPEAHYDWVRPGIILYGASPSGNWQDIASSGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II +++  AG+ V YG +   T+   I V A GYADGYP                
Sbjct: 234 TLSSEIIGVQQLQAGDGVGYGYRYHATQPQRIGVVACGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---PDIK----LDDVALA 349
           G    + G M  ++G ++MDM   D+T      +G  ++++G     I+     +  A++
Sbjct: 283 GTPVAVDGIMTQVVGAVSMDMITVDLTPCPQAGIGSSVELWGKMSKSIRWRKQPERWAMS 342

Query: 350 SGTTNYDLLVRIGTRYA 366
                  L+  +  R  
Sbjct: 343 -------LMCALAPRVP 352


>gi|85710981|ref|ZP_01042042.1| Alanine racemase [Idiomarina baltica OS145]
 gi|85695385|gb|EAQ33322.1| Alanine racemase [Idiomarina baltica OS145]
          Length = 384

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 101/378 (26%), Positives = 178/378 (47%), Gaps = 22/378 (5%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             +   R +I LT L++N   + +         V+K + YG G  ++A A+ +  V+ + 
Sbjct: 17  QPHRQTRARILLTNLRDNAKQLKSYIDQQPMLGVIKADGYGHGATEVAHAITDY-VEKYA 75

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           V  ++E + LR       I +L G++      +  +    PVI +  Q+   S++ S   
Sbjct: 76  VAFIDEAIALRGSGIDKPIVILQGVYSTEDWLLCAEQQFEPVIHNAQQIDCLSEITSEAN 135

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L+ D+G +RLG    +            L    ++++H A AD+P S + ++QLE
Sbjct: 136 RVNVWLKQDSGMHRLGFFADDVEGAVGQLRAHALINQIVLMTHFAEADNPESPLTAIQLE 195

Query: 181 RFRTLISHYKGI--EASLASSSGIL----LGPNYHFQLTRPGISLYGGTDK---INKSHP 231
           RF  ++   +      S+A+S+ +L    L      +  R GI+LYG       +  +  
Sbjct: 196 RFYAVLHAVRDKIDGVSVANSAFMLGDDVLDAMGLTKWFRAGIALYGQNPSQADLTDNVE 255

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++  +  EA +I +R    GE V YG + +  R+S IA  AIGYADGYP +L        
Sbjct: 256 LKPTMALEAPVIALRIIQPGETVGYGSRWRAQRESRIATVAIGYADGYPRSL-------- 307

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                G    I G +  ++G+I+MDM   D+TD   IE+GD ++++G  + +  +A  + 
Sbjct: 308 ---PDGTPMIINGQVGCLVGRISMDMITVDVTDIEGIELGDNVELWGEQLPIQVIADQAR 364

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+L  ++  R  + Y
Sbjct: 365 TITYELFAQVTRRVPRVY 382


>gi|260072540|gb|ACX30440.1| alanine racemase [uncultured SUP05 cluster bacterium]
          Length = 349

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 96/359 (26%), Positives = 160/359 (44%), Gaps = 22/359 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             I  +AL +N   +      ++  ++VK +AYG     + P +  +      V+ + E 
Sbjct: 5   ASISQSALAHNLSVVRQSCSESKIVSMVKADAYGHHLTLVDPIIDES--DLLAVSELSEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            KLR  T    I +L G++   E       +   V+    Q+   ++           ++
Sbjct: 63  QKLREKT-DKPILLLSGVYSQDELQSALALDCHVVVHEKEQINLIAQTKE---RIGVWIK 118

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLGL   E  +      N  L  +  ++SH ACAD+     N  QL  F  L  
Sbjct: 119 IDTGMHRLGLLANEYHECIEAFKNNTLVDVECVMSHFACADEIDHPTNESQLNEFNQLTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               I+ S+A+S+ IL   +  F   RPGI LYG +        ++ V+   A I+ I+ 
Sbjct: 179 D--SIKRSMANSAAILSNKDALFDFVRPGIMLYGISPFGTDESDLKPVMELSAPILSIKT 236

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      + + IA+  IGY DGYP                G    I G + 
Sbjct: 237 IQTGESVGYGATWTANKKTNIAIIGIGYGDGYPRHAKN-----------GTPVCINGKLC 285

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++MD+   +I DS++ +VGD   ++G + +  + VA  S T  Y+L+  + +R 
Sbjct: 286 PLIGRVSMDLICVNI-DSITAKVGDIATLWGNEKLSAETVATWSDTIGYELVTGVSSRV 343


>gi|260891454|ref|ZP_05902717.1| alanine racemase [Leptotrichia hofstadii F0254]
 gi|260858837|gb|EEX73337.1| alanine racemase [Leptotrichia hofstadii F0254]
          Length = 365

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 157/372 (42%), Gaps = 21/372 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             +I++  L +N   +  +    +  AV+K +AYG G  +I  AL   G+++F V + +E
Sbjct: 4   WAEININNLYSNIDEIEKIVAKDKIIAVIKADAYGHGMLEICNALIKKGIKNFAVATSDE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
            +K++       + +L  +      +I D N+  +++   ++ +  K     G +    +
Sbjct: 64  ALKIKELHDDIMVLILGPVENEYMDLIADKNIYFMVTDFEEIEYLEKTGKEKGKTTDVFI 123

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG  R+G    E         N        I S    + D       +Q  +F+ + 
Sbjct: 124 KIDTGMGRVGFQESETEKLNEILKNASHINPIGIFS-HFSSSDSDKDYTKLQESKFKAMC 182

Query: 187 SHY-KGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSHPMQTVVTAEA 240
                GI       L +S G L   +      R GI LYGG T++    +  + V++  A
Sbjct: 183 EKISSGISSIKYRHLHNSFGTLKFQDSIEDFVRVGIILYGGVTEEETAPYKFKPVMSLFA 242

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I  I+       +SYG   K       A  +IGYADG    LS             G  
Sbjct: 243 KISYIKTLKEDSFISYGNTYKGKAGKTYATVSIGYADGVRRDLSN-----------KGYV 291

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           F KGY   I+G++ MD  +  + + L    + GD ++ FG +I + +VA    T +Y+++
Sbjct: 292 FYKGYKCEIVGRVCMDQLIILLPEELKNEAKKGDVVEFFGENISVVEVADLCNTISYEIM 351

Query: 359 VRIGTRYAKFYT 370
             I  R  + Y 
Sbjct: 352 CGISQRVPRIYV 363


>gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
 gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
          Length = 824

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 146/371 (39%), Gaps = 24/371 (6%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+++L A+  N +   + +    +   ++K NAYG G  +IA  L +  V    V   +E
Sbjct: 465 LEVNLNAVVKNLNWYRSFMKPETKLVCMIKANAYGAGSVEIAKTLQDHRVDYLAVAVADE 524

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR     + I ++        K +FD  L P + S   L    K          P  
Sbjct: 525 GVTLRRNGITSNIMIMNPEMTA-FKTMFDYELEPEVYSFRLLEALIKAAEKEGITDFPVH 583

Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFR 183
           +++DTG +RLG     +         ++       + SH      D     ++ Q   F 
Sbjct: 584 IKLDTGMHRLGFDPINDMDKLIDRLKHQNAVIPRSVFSHFVGSDSDDFDDFSANQFALFD 643

Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
                 +      I   + +S+GI   P     + R G+ LYG   + N+      V T 
Sbjct: 644 AGSKKLQAAFDHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGINSRNNEIINN--VSTL 701

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ +R    G+ V Y  +  +  DS+IA   IGYADG    L               
Sbjct: 702 KTTILQMRHIPVGDTVGYSRKGTIEHDSVIAAIPIGYADGLNRHLGNRHC---------- 751

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G I MD+ M D+T     + GD ++IFG  + +  ++    T  Y++L
Sbjct: 752 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDTVEIFGDHLPVTVLSDVLDTIPYEVL 810

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 811 TNISDRVKRIY 821


>gi|323463920|gb|ADX76073.1| alanine racemase 1 [Staphylococcus pseudintermedius ED99]
          Length = 382

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 95/382 (24%), Positives = 166/382 (43%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S ++ R   +K++L A+  N++++  L  N     VVK NAYGLG  +IA  L   G + 
Sbjct: 2   SEKYYRTTTMKVNLDAITENYYALTKLQPNKTMMPVVKANAYGLGSIQIAQHLSQLGAEF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V +++E ++LR++  + +I +L  I P          +   + S   L   +  +   
Sbjct: 62  FCVATLDEAIELRMHGIKEKILILSSIPPDAINKAIQHRVAVTVPSRAWLEAATAEIDED 121

Query: 120 --VSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              +    ++VDTG NRLG+   EA  D  +     +        SH   AD+ +   + 
Sbjct: 122 NEKTLWLHIKVDTGMNRLGVKDIEAYHDIINFIHAHENLVFEGAFSHFHSADEDNDSAH- 180

Query: 177 VQLERFRTLISHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231
           +Q ERF  +I   +      + +S+G L          RPGI+LYG           +  
Sbjct: 181 LQYERFEEIIESTEHPTYIHMQNSAGTLRFNPSLCNAFRPGIALYGYYPSAFIEKIATAQ 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +   V     ++ ++  + GE V YG       D  IA+  IGYADGY  ++ G +    
Sbjct: 241 LAPAVQLVTEVMEVKSLIKGETVGYGQTYTAPEDMTIALLPIGYADGYLRSMQGAN---- 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     I      I+G+++MD T   +    ++++G+ + +          ++ +A
Sbjct: 297 --------VRIGTTECEIVGRVSMDRTAIRVP--ATVQMGEEVILIDDQAHTSQSVESLA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L  IG R  + Y
Sbjct: 347 AQQQTINYEVLCNIGRRVPRVY 368


>gi|255326888|ref|ZP_05367964.1| alanine racemase [Rothia mucilaginosa ATCC 25296]
 gi|255296105|gb|EET75446.1| alanine racemase [Rothia mucilaginosa ATCC 25296]
          Length = 437

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 160/392 (40%), Gaps = 30/392 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL AL++N   +  L G+    AV+K +AYG G   +A +   AG     V  V E 
Sbjct: 25  ATIDLDALEHNVRRLKELIGDRALIAVIKADAYGHGAYPVARSAIAAGADLLGVVHVNEA 84

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR    +A +                  +   +S        +     G      L+ 
Sbjct: 85  LELRADGIEAPLMAWLHTPSTDFDAALQEKIHLGVSGWDLEAVAAAAERTGERAIVHLKA 144

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G +  +       +   +   L  +  I SHLA AD+P+    + QL+   T 
Sbjct: 145 DTGLGRNGATAADWPALVARAACLEESGLITVEGIFSHLAVADEPTRAETAQQLDTLDTF 204

Query: 186 ISHYK--GIEA---SLASSSGILLGP--------NYHFQLTRPGISLYGGTDKIN---KS 229
           ++  +  G++     LA+S   L                  R G++LYG +       + 
Sbjct: 205 VAQAREAGLDPKIVHLANSPATLTASLEGWDTEERLLGDGVRCGLALYGLSPLPEVTAED 264

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T  + I  +++  AG+ VSYG +    + + +A+  +GYADG P         
Sbjct: 265 LGLKPVMTVGSYIAAVKEVPAGQGVSYGLRYHTPKATTLALVPLGYADGVPRIAENAPVR 324

Query: 290 HSPSVFLGGKGFI----KGYMVPILGKITMDMTMFD-----ITDSLSIEVGDYIQIF--G 338
             P       G +    +G    ++G+I MD  + D     ++D     +G    +F  G
Sbjct: 325 IYPGAQNAEDGSVPNNTEGKTYRVVGRIAMDQMVVDLGEPGLSDPALGYLGAPAILFGAG 384

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            +  +++ A A+ T NY+++ RI +R  + Y 
Sbjct: 385 ENPPVEEWADAAQTINYEIVTRISSRVERLYV 416


>gi|308234426|ref|ZP_07665163.1| alanine racemase [Atopobium vaginae DSM 15829]
 gi|328944273|ref|ZP_08241737.1| alanine racemase [Atopobium vaginae DSM 15829]
 gi|327491192|gb|EGF22967.1| alanine racemase [Atopobium vaginae DSM 15829]
          Length = 385

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 101/389 (25%), Positives = 164/389 (42%), Gaps = 33/389 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            N +  ++I+L+AL+ N  +   L + + R   VVK +AYG G    A A+ +AG   F 
Sbjct: 7   KNRWSWVEINLSALRRNVRTFKKLLNPSVRLVCVVKADAYGHGAAACARAMSSAGANQFA 66

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120
           V +V+EG+ LR       I +L          + + +LIP I +   +  Y  + ++   
Sbjct: 67  VATVDEGIALRKSGITQPIVLLSEPPETAIDDLIEYSLIPTIYTTEFVLAYGERCVAHNT 126

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              Y + +DTG  R+G++  +A++F H     +        +H A AD         Q +
Sbjct: 127 VGKYHMALDTGMTRVGVAASDAVEFRHTIDFHRGISCIGTSTHFATADIEGDWDFRRQYQ 186

Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ-- 233
            F   I                S++  +L P   F + R GI LYG          ++  
Sbjct: 187 VFSDAIRELHAAGFYTGLIHCNSTAATILHPELQFDMCRVGIGLYGLHPSEATVSRLELS 246

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSP 292
            V++ +AR++   +   G+ VSYG   +++   L IA   +GYADG   +LS        
Sbjct: 247 PVMSVKARVVRAVEPRIGDGVSYGMTYRVSDPHLQIATIPLGYADGLSRSLSNKMD---- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDIT--------DSLSIEVGDYIQIFGPD---- 340
                    +KG  V  +G+I MD  MF               IE GD + + G D    
Sbjct: 303 -------VLVKGQRVHQVGRICMDQCMFAYPLQTLAHPQGFAPIERGDVVTVLGEDGAEY 355

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I  D++A    T NY++L     R  + Y
Sbjct: 356 ISADELAALRNTINYEVLCDFSLRLERIY 384


>gi|134094965|ref|YP_001100040.1| alanine racemase 2, PLP-binding, catabolic [Herminiimonas
           arsenicoxydans]
 gi|133738868|emb|CAL61915.1| alanine racemase, catabolic [Herminiimonas arsenicoxydans]
          Length = 348

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 154/354 (43%), Gaps = 20/354 (5%)

Query: 17  KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76
           ++N       + ++R  AVVK NAYG G E+              +  V+   +LR    
Sbjct: 2   RHNLRVAKNCAPHSRILAVVKANAYGHGLERGMRGFAE--ADGLGLIEVDNAARLRQLGW 59

Query: 77  QARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRL 135
           Q RI +L G     + + I    +  V+  V QL    +  S        L++++G NRL
Sbjct: 60  QKRILLLEGFFDADDLQTIAVHQIDTVVHCVEQLQMLEQA-SLNAKLDVHLKINSGMNRL 118

Query: 136 GLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLERFRTLISHYKGIE 193
           G       D           +    I+H A A++ ++     S QL+RF+T      G +
Sbjct: 119 GFMPAVCRDIYQRLRAIPAVRNISFITHFANAENAANANLPLSEQLQRFQTATQGLPG-D 177

Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEARIILIRKALAG 251
             L++S+  L+ P       RPG+ LYGGT       +  +Q  +T  + II I+   AG
Sbjct: 178 RCLSNSAADLMHPECAADWVRPGVMLYGGTPADTSAAAFGLQPAMTLSSEIIGIQHIAAG 237

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
           + V YG     +    I V A GYADGYP                G    + G    ++G
Sbjct: 238 DAVGYGSSFVASGPMTIGVVACGYADGYPRHA-----------PSGTPVIVDGVRTQMVG 286

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           +++MDM   D+T   +  VG  + ++G  + +D+VA A+GT  Y+L+  I  R 
Sbjct: 287 RVSMDMITVDLTPVATAGVGSPVILWGQGLPIDEVANAAGTVGYELMCAIAPRV 340


>gi|229489364|ref|ZP_04383227.1| alanine racemase [Rhodococcus erythropolis SK121]
 gi|229323461|gb|EEN89219.1| alanine racemase [Rhodococcus erythropolis SK121]
          Length = 400

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 96/376 (25%), Positives = 166/376 (44%), Gaps = 26/376 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             +DL A+ +N   +   +G+A   AV+K + Y  G   +A    +AG ++  VT++ E 
Sbjct: 30  AVVDLDAIAHNVRVLREFAGDAALMAVIKADGYNHGAVAVARTALSAGARELGVTTIAEA 89

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-YSKLMSCGVSHPYALQ 127
           + LR     A +                +++   +SS   L          G      L+
Sbjct: 90  LVLREAGITAPVLAWLHGVDADFASAIRSDVEIGVSSPRHLAAVVGAARVLGQQATVTLK 149

Query: 128 VDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VDTG NR G+S     + LD    + ++   +L  + SHLA +D+P   V  +Q +R   
Sbjct: 150 VDTGLNRNGVSRTEWPQMLDDLATARDEGTIRLRGVFSHLAHSDEPHHDVIDMQKQRLID 209

Query: 185 LIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTA 238
            ++    +G +     L++S+  +  P+  F + RPGI++YG +         ++  +T 
Sbjct: 210 AVADVRARGFDPEVVHLSNSAATVTRPDLRFDMVRPGIAIYGLSPVPELGDFGLRPAMTL 269

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A++IL++K  AGE VSYG Q     D+ +A+  +GYADG   +LSG             
Sbjct: 270 RAKVILVKKVAAGEGVSYGHQWVAPHDTTLALLPVGYADGLSRSLSGKF----------- 318

Query: 299 KGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353
           +  + G     +G+I MD  + D+  D   +  GD    FG     +      A    T 
Sbjct: 319 EVQLGGKRRQAVGRICMDQVLVDLGPDGDGVREGDTAIFFGNGDHGEPNAQAWADVLDTI 378

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y+++  I  R  + Y
Sbjct: 379 HYEVVTGIRGRTVRTY 394


>gi|126740432|ref|ZP_01756120.1| alanine racemase [Roseobacter sp. SK209-2-6]
 gi|126718568|gb|EBA15282.1| alanine racemase [Roseobacter sp. SK209-2-6]
          Length = 345

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 190/364 (52%), Gaps = 25/364 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +L I+L AL  NW ++NA++ N  TAAVVK N YGL   ++A AL  AG ++FFV + E
Sbjct: 4   AKLTINLDALVANWRNLNAMT-NCETAAVVKANGYGLDAGRVAKALAQAGARNFFVAAAE 62

Query: 67  EGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EGV LR        I V  G   G  +++ D  L P+++S+ Q+    +       H + 
Sbjct: 63  EGVALRRALGAGPGISVFSGHMDGDTRLLKDFQLTPMLNSLEQML---RHFESLPGHAFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D+G NRLG+   E       +  +      L++SHLACAD+P+  +N+ QL+ FR +
Sbjct: 120 VQLDSGMNRLGMEPAEWAAVGEIALGQS---PVLLMSHLACADEPAHEMNAKQLKTFREM 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            S  + +  SLA++ GILLGP YHF L RPGI LYGG   ++       V + +  +I +
Sbjct: 177 TSGIE-VPRSLAATGGILLGPEYHFDLCRPGIGLYGGRPYLDA----LPVASLDLPVIQV 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE V YG      R S IA  A GYADG    L             G   F    
Sbjct: 232 RDLEAGESVGYGNAWIAKRPSRIATVAAGYADGLQRALMNT----------GIDTFAGET 281

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             PI+G+++MD+   D+T    +    ++ +      +D +A A+GT  Y+ L  +G RY
Sbjct: 282 PCPIVGRVSMDLITVDVTALSDVP--SHLSLLNERQGVDILADAAGTIGYEFLTSLGHRY 339

Query: 366 AKFY 369
           A+ Y
Sbjct: 340 ARTY 343


>gi|153006329|ref|YP_001380654.1| alanine racemase [Anaeromyxobacter sp. Fw109-5]
 gi|152029902|gb|ABS27670.1| alanine racemase [Anaeromyxobacter sp. Fw109-5]
          Length = 393

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 158/373 (42%), Gaps = 19/373 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL AL +N   + A +  ++  AVVK NAYG G   +  A   AG     V  
Sbjct: 11  RPVWAEIDLDALAHNVRLLAARAAPSKLYAVVKANAYGHGAIAVGRAALAAGASALAVVC 70

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHP 123
           V+E  +LR     A I V+    P     +   +L P ++S       +      GV   
Sbjct: 71  VDEAEELRRGGVDAPILVIGYTPPADAARVVALDLRPTVASADVAEALAVAAKRRGVPVA 130

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NR GL+    +            ++  + +H A A++        Q +  R
Sbjct: 131 VHLELETGLNRHGLTPDALVALATRLRAMPELRVEGLFTHFAAAEEGDQRFTRRQFDVLR 190

Query: 184 TLISHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEA 240
            + +    I E   A+S+ +LL      ++ R G+S+YG            ++ V++  A
Sbjct: 191 DVSARLSWIPERHCAASASLLLDHEMALEVVRAGLSMYGYRPAPWCGTDADLRPVLSLRA 250

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  + +   G  V YG      R S +A+   GYADGY  +L                 
Sbjct: 251 RVARVLEVERGATVGYGRTWAAARPSRVALVMCGYADGYRRSLGNR-----------AHL 299

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356
            ++G   P++G++ MDM M D+T    +  GD   + G D    +  D++A  + T +++
Sbjct: 300 LVRGRRAPVVGRVAMDMCMVDVTAVPEVRAGDVATLLGRDGEERVDADELASLADTISWE 359

Query: 357 LLVRIGTRYAKFY 369
           +L  I  R  + Y
Sbjct: 360 ILAGITARVPRLY 372


>gi|257785044|ref|YP_003180261.1| alanine racemase [Atopobium parvulum DSM 20469]
 gi|257473551|gb|ACV51670.1| alanine racemase [Atopobium parvulum DSM 20469]
          Length = 384

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 164/388 (42%), Gaps = 33/388 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           + +  ++IDL+A+++N  +    L+   +   VVK +AYG G  + A A+ + G   F V
Sbjct: 7   DRWAWIEIDLSAVRHNVKAFKAQLNRGVKLMCVVKADAYGHGAAQCAKAMQSVGADQFAV 66

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
            +V+EGV+LR    ++ I VL          +   +++P + +V     Y +   +    
Sbjct: 67  ATVDEGVELRCSGIESPILVLSEPPVTSIPDLVRFDIMPSVYTVDFALAYGEASAAANKV 126

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             Y L +DTG  R+G+  ++ L+   +    +  + +   +H A AD   +    +Q+ R
Sbjct: 127 GRYHLAIDTGMTRIGVRREDLLEVRGSIDFHRGLECAGTFTHFATADVLDNWDFDLQVNR 186

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234
           F   I+  K            ++ G +L  +  F + R GI LYG            +Q 
Sbjct: 187 FVEAITALKNAGYELGLVHADNTPGTILHKDIQFDMVRVGIGLYGLHPSKLTIPRIDLQL 246

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTR-DSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           V++   R+  +     G+ V YG   ++ R +  +A   IGYADG    LS         
Sbjct: 247 VMSVRGRVTRVVYPAVGDGVGYGMTWRVPRNNIQVATVPIGYADGLARNLSNRMD----- 301

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDIT--------DSLSIEVGDYIQIFGPD----I 341
                    +G  V  +G I MD  M  +             I  GD + + G D    I
Sbjct: 302 ------VLARGSRVRQVGNICMDQFMIAVDTTGARANKPVYEICYGDVVTLIGKDGDQEI 355

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +D++A    T NY+++   G R  K Y
Sbjct: 356 TVDEMADLRETINYEVVCNFGARLDKVY 383


>gi|149913818|ref|ZP_01902350.1| alanine racemase [Roseobacter sp. AzwK-3b]
 gi|149812102|gb|EDM71933.1| alanine racemase [Roseobacter sp. AzwK-3b]
          Length = 346

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 130/363 (35%), Positives = 187/363 (51%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A++ NW +++AL G ++TAAVVK +AYGL   ++AP L  AG + FFV   EEG
Sbjct: 6   LTIDLDAIRANWRALDAL-GTSQTAAVVKADAYGLDAGRVAPVLAAAGARSFFVAVAEEG 64

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR    P   I V  G   G  ++I    LIP+++SV Q+  +++ +     H + +Q
Sbjct: 65  AALRKVLGPDVAIHVFSGHMAGDAELIGGAGLIPMLNSVDQMIRHAEAL---PGHAFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G NRLG+   E       + ++     +L++SHLACAD+P   +N  QL+ FR +  
Sbjct: 122 LDSGMNRLGMEPSEWAAVRDVALSQS---PTLVMSHLACADEPDHPMNLQQLQAFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
                   LA++ GIL+GP YHF LTRPGI LYGG          + VVT +  +I  R 
Sbjct: 179 GVTA-PLCLANTGGILMGPEYHFDLTRPGIGLYGGRPFEGA----RPVVTLDIPVIQCRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
               E V Y      TR + IA    GYADG    +                    G   
Sbjct: 234 LTPRETVGYANSFTATRPTRIATIGAGYADGIIRAMGPRS-----------HVLADGVPC 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI G+I+MD+   DITD        ++Q+ GP   +DD+A  +GT  Y++L  +G RY +
Sbjct: 283 PIAGRISMDLIGVDITDLGHDPE--HLQLLGPTQTVDDLADNAGTIGYEILTSLGARYVR 340

Query: 368 FYT 370
            Y 
Sbjct: 341 RYV 343


>gi|254823094|ref|ZP_05228095.1| alanine racemase [Mycobacterium intracellulare ATCC 13950]
          Length = 391

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 167/379 (44%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+ +N   +   +G A+  AVVK + YG G  + A A   AG  +  V +V
Sbjct: 16  LAEALVDLGAIAHNVRLLCEQAGGAQVMAVVKADGYGHGAAQTARAALAAGAAELGVATV 75

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR    +A +                 ++   +SS  Q       +   G +   
Sbjct: 76  DEALALRADGVRAPVLAWLHPPGFDFGPALLADVQIAVSSERQLDELLDAVRRTGRTATV 135

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            ++VDTG NR G+  +     L     +  +    L  ++SH+  AD P++ VN +Q +R
Sbjct: 136 TVKVDTGLNRNGVPPEHYPSMLTALRRAVAENAIVLRGLMSHMVYADQPANPVNDLQAQR 195

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235
           F  +++  +  G+    A L++SS  +  P+  F + RPGI++YG +    +    +   
Sbjct: 196 FTEMLAQARDQGVRYEAAHLSNSSATMSRPDLAFDMVRPGIAVYGLSPVPERGDMGLIPA 255

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + L++   AGE VSYG      RD+ +A+  +GYADG   +L            
Sbjct: 256 MTVKCPVALVKSIRAGESVSYGHTWTARRDTTLALLPVGYADGVFRSLGNRL-------- 307

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350
              +  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A   
Sbjct: 308 ---EVLINGRRRPGVGRICMDQFVVDLGPGPTDVAEGDEAILFGPGASGEPTAQDWADLL 364

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+++     R  + Y
Sbjct: 365 GTIHYEVVTSPRGRITRTY 383


>gi|6708455|gb|AAF25943.1|AF214487_1 alanine racemase [Mycobacterium avium]
          Length = 391

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 167/379 (44%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+++N   +   +  A+  AVVK + YG G  + A A   AG  +  V +V
Sbjct: 16  LAEALVDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATV 75

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR     A +           +      +   +SS  Q     + +   G +   
Sbjct: 76  DEALALRAAGISAPVLAWLHPPGIDFRPALLAGVQIGLSSQRQLDELLTAVRDTGRTATV 135

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            ++VDTG NR G+   +    L     +  ++      ++SH+  AD P++ VN VQ +R
Sbjct: 136 TVKVDTGLNRNGVPPAQYPSMLTALRRAVAEQAIVPRGLMSHMVYADQPANPVNDVQAQR 195

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTV 235
           F  +++  +  G+    A L++SS  +  P+  F + RPGI++YG +         +   
Sbjct: 196 FTDMLAQAREQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYGLSPVPELGDMGLVPA 255

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + L++   AGE VSYG      RD+ +A+  +GYADG   +L G          
Sbjct: 256 MTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRL-------- 307

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DIKLDDVALAS 350
              +  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A   
Sbjct: 308 ---QVSINGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADLL 364

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+++     R  + Y
Sbjct: 365 GTIHYEVVTSPRGRITRTY 383


>gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD]
          Length = 741

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 101/354 (28%), Positives = 158/354 (44%), Gaps = 24/354 (6%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L    +  A+VK  +YGLG  +IA  L +  +    V   +EGV+LR       I V+  
Sbjct: 399 LKPETKIMAMVKAYSYGLGGYEIAEFLQHHHIDYLGVAVADEGVELRKNGITVPIVVMNP 458

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV---SHPYALQVDTGFNRLGLSLQEA 142
                   I + NL P I S   L  + K +        +P  ++++TG +RLG    E 
Sbjct: 459 -EQHSYNTIIEYNLEPNIYSFRVLELFHKQLKQNGYEGRYPIHIKLETGMHRLGFKEDE- 516

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLISH------YKGIEAS 195
           +D   +  N+   ++  I SHL+ +D P        Q ++F  L  +      YK +   
Sbjct: 517 IDQLKDYLNQMSVKVESIFSHLSSSDIPQEKDYTLAQCQKFDKLSQNIIKDLNYKPL-RH 575

Query: 196 LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVS 255
           + +S+GI     Y   + R GI + G +        +  VV  ++ I  I +    + VS
Sbjct: 576 ILNSAGITNYTYYQMDMVRIGIGMMGISASPEIQPLLNPVVAFKSVISQISEIQPNDSVS 635

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           YG + K ++ + IA   +GYADG P  LS             G   IK  + PI+G + M
Sbjct: 636 YGRRYKASKSTRIATIPVGYADGVPRLLSNGV----------GYVGIKNTLCPIVGSVCM 685

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           DM M DI+D  + + GD + IF     L+D A+ S T  Y++L  I  R  + Y
Sbjct: 686 DMMMVDISDLPT-KEGDEVTIFHEKPSLEDFAMYSQTIPYEVLTSISRRVKRVY 738


>gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|315022146|gb|EFT35175.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Riemerella anatipestifer RA-YM]
          Length = 814

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 101/354 (28%), Positives = 158/354 (44%), Gaps = 24/354 (6%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L    +  A+VK  +YGLG  +IA  L +  +    V   +EGV+LR       I V+  
Sbjct: 472 LKPETKIMAMVKAYSYGLGGYEIAEFLQHHHIDYLGVAVADEGVELRKNGITVPIVVMNP 531

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV---SHPYALQVDTGFNRLGLSLQEA 142
                   I + NL P I S   L  + K +        +P  ++++TG +RLG    E 
Sbjct: 532 -EQHSYNTIIEYNLEPNIYSFRVLELFHKQLKQNGYEGRYPIHIKLETGMHRLGFKEDE- 589

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLISH------YKGIEAS 195
           +D   +  N+   ++  I SHL+ +D P        Q ++F  L  +      YK +   
Sbjct: 590 IDQLKDYLNQMSVKVESIFSHLSSSDIPQEKDYTLAQCQKFDKLSQNIIKDLNYKPL-RH 648

Query: 196 LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVS 255
           + +S+GI     Y   + R GI + G +        +  VV  ++ I  I +    + VS
Sbjct: 649 ILNSAGITNYTYYQMDMVRIGIGMMGISASPEIQPLLNPVVAFKSVISQISEIQPNDSVS 708

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           YG + K ++ + IA   +GYADG P  LS             G   IK  + PI+G + M
Sbjct: 709 YGRRYKASKSTRIATIPVGYADGVPRLLSNGV----------GYVGIKNTLCPIVGSVCM 758

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           DM M DI+D  + + GD + IF     L+D A+ S T  Y++L  I  R  + Y
Sbjct: 759 DMMMVDISDLPT-KEGDEVTIFHEKPSLEDFAMYSQTIPYEVLTSISRRVKRVY 811


>gi|296111091|ref|YP_003621472.1| alanine racemase [Leuconostoc kimchii IMSNU 11154]
 gi|295832622|gb|ADG40503.1| alanine racemase [Leuconostoc kimchii IMSNU 11154]
          Length = 374

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 165/378 (43%), Gaps = 27/378 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               ++IDL A++ N   +   +   R  AVVK +AYG G   +  ALY+ G++DF V +
Sbjct: 10  RPTWIEIDLKAIQYNARLIMKHADATRMIAVVKADAYGHGAVAVTKALYDIGIRDFAVAT 69

Query: 65  VEEGVKLRLYTPQAR--IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           + E + LR         I +L      Q K++ +  L+P + ++  L      ++     
Sbjct: 70  ISEALILRQEVDHDDFNILLLGVQDVSQVKLMVENRLMPAVGTLEWLYQAVSFLTDSQIL 129

Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L VDTG  R+G + Q +  +  H        +L+ + +H A ADD +      Q+ +
Sbjct: 130 DVHLAVDTGMGRMGANSQADVTELYHFIQKSSQLRLNGVFTHFATADDDNEAYYKQQVTK 189

Query: 182 FRTLI--SHYKGIEASLASS-SGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQTV 235
               +  +        LA+S S +           R G  LYG   G+  ++ S  ++ V
Sbjct: 190 LYQWVNGAGIPKKYWHLANSGSALWHHNEIDTDTIRVGSVLYGFNPGSPALDMSIKLKNV 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ ++R+  + +  AGE VSYG          +A   IGYADGY   + G+         
Sbjct: 250 LSLKSRMGAVHQLQAGESVSYGATYTAEHAQWVATLPIGYADGYLRRMGGM--------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              K  + G    ++G+ITMD  +  +     +  G  + + G D    I ++D A  +G
Sbjct: 301 ---KVLVSGEEAQVVGRITMDQIVIALDKQYPV--GTEVTLIGRDGDEKITIEDFATYAG 355

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  +++L   G R  + Y
Sbjct: 356 TIPHEILTSFGVRLPRIY 373


>gi|297571884|ref|YP_003697658.1| alanine racemase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932231|gb|ADH93039.1| alanine racemase [Arcanobacterium haemolyticum DSM 20595]
          Length = 374

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 157/386 (40%), Gaps = 33/386 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M S    R  I   A   N   +   + +A   A+VK N YG G E IA   + AG+   
Sbjct: 1   MTSQAPARALISRRAFTQNIEVVRKHT-DATLMAIVKANGYGHGVELIAQWAWEAGIDWL 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCG 119
            +  + E + LR       +           +   + N+   + +   +        +C 
Sbjct: 60  GLAQLNEALTLRQSHTHGHVLAWIFAPGADFQRAIEQNIDLSVGATWAIDEIEAAARACR 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDP-SSHVN 175
                 ++VDTG  R G  L +             + + Q+  + SHLACADDP S    
Sbjct: 120 RPARIHVKVDTGMTRGGFDLDQLPSVFARVKKLAAEGIIQIVGLWSHLACADDPHSDAAT 179

Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---- 226
           ++Q++RF    S  K  E       LA+SSGIL  P  H+ + RPGI LYG +       
Sbjct: 180 ALQVDRFEQARSLAKEAEVEIPFCHLAASSGILWHPETHYDMVRPGIVLYGLSPNPAYAT 239

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++ ++T EA +IL R+   G  +SYG        + +AV  +GYADG     S  
Sbjct: 240 GPELGLEPLMTLEANVILTREVPEGVGISYGHTHITDEPTRLAVVPVGYADGISRRASNA 299

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
            S             + G   PI G + MD  +    ++     GD   +FGP+    + 
Sbjct: 300 LS-----------VTLNGDQAPICGVVCMDQFVV---NAPHAHAGDTAVLFGPEHKGYLT 345

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKF 368
            D+ A  + T NY++   +G R  + 
Sbjct: 346 ADNWAEKTDTINYEIFCNLGPRIPRI 371


>gi|254475313|ref|ZP_05088699.1| alanine racemase [Ruegeria sp. R11]
 gi|214029556|gb|EEB70391.1| alanine racemase [Ruegeria sp. R11]
          Length = 345

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 131/365 (35%), Positives = 184/365 (50%), Gaps = 25/365 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +L I+L AL  NW +++AL+ N  TAAVVK N YGL   ++  AL  AG ++FFV   E
Sbjct: 4   AKLTINLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGQALAKAGARNFFVAIAE 62

Query: 67  EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EGV LR    P   I V  G   G  K++ D  L P+++S+ Q+    +       H + 
Sbjct: 63  EGVALRRALGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQML---RHFESLPGHAFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D+G NRLG+   E       +  +      L++SHLACAD+PS  +N+ QL+ F  L
Sbjct: 120 VQLDSGMNRLGMEAAEWAAVRDIALGQG---PVLVMSHLACADEPSHPMNAQQLQTFSEL 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 +  SL+++ G+LLG NYHF L RPGI LYGG    +       V   +  +I I
Sbjct: 177 TDGL-DVPRSLSATGGLLLGRNYHFDLCRPGIGLYGGQPFGDA----LPVAQLDLPVIQI 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG      R S IA  A GYADG    L             G   F    
Sbjct: 232 RDLDVGETVGYGNAWSAQRPSRIATVAAGYADGLHRALGN----------GGISVFAGDT 281

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P+ G+++MD+   DITD        ++ I      +D +A A GT  Y++L  +G+RY
Sbjct: 282 PCPVAGRVSMDLITVDITDLPDSP--SHLTILNEQQTVDMLADAGGTIGYEILTSLGSRY 339

Query: 366 AKFYT 370
           A+ YT
Sbjct: 340 ARSYT 344


>gi|295111805|emb|CBL28555.1| alanine racemase [Synergistetes bacterium SGP1]
          Length = 383

 Score =  338 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 103/379 (27%), Positives = 161/379 (42%), Gaps = 28/379 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +IDL AL+ N  S+  L     ++ AVVK +AYG G  ++A  L   GV    V  
Sbjct: 10  RTWAEIDLDALEGNVRSLKGLLKPGVKSLAVVKADAYGHGIVEVARKLETCGVDMLAVAY 69

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHP 123
           V   V LR    +  I  L    P    ++++ ++   +  +   L       + G +  
Sbjct: 70  VMAAVTLRKNGIKLPILCLGQSAPSLAPLMWEYDVTQAVGDLENGLALSRAASAAGRTIK 129

Query: 124 YALQVDTGFNRLGLSLQE-----ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
             ++VDTG  R+G    E       D           +   + SH A A D       +Q
Sbjct: 130 IHVKVDTGMGRIGFYWPESGWEAVADEMATLCRLPGLEAEGLFSHFANA-DGDPEYTRMQ 188

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSH 230
           + +F                  +A+S G+L  P  H  + R G+ LYG     +++    
Sbjct: 189 MAKFAAARQALADRGVTFRLGHIAASLGVLRYPEAHLDMGRFGLVLYGYASSDEEVESPA 248

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V+T +ARI  +R+   G  + YGG   L RDS++AV   GYADGYP  LS   S  
Sbjct: 249 ELKPVMTLKARIAAVRELPKGAKIGYGGTAVLKRDSVLAVLPTGYADGYPRALSNRMS-- 306

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                     +I   + P++G++ MDM M D+TD   +  GD   +    + L   ALA 
Sbjct: 307 ---------VYIHDRLCPVVGRVCMDMFMADVTDVPGVRAGDEAVLLDGRLML-KAALAG 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  ++LL  I  R  + +
Sbjct: 357 HTIIHELLSCIMPRVPRVF 375


>gi|296135085|ref|YP_003642327.1| alanine racemase [Thiomonas intermedia K12]
 gi|295795207|gb|ADG29997.1| alanine racemase [Thiomonas intermedia K12]
          Length = 367

 Score =  338 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 158/381 (41%), Gaps = 34/381 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL +N   +   +  ++  AVVK NAYG G  +   AL       F +  
Sbjct: 3   RPISAVIHTAALSHNLLRVRQATPASKVWAVVKANAYGHGIARAYSALRT--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  KLR       I +L G   P    +    NL  V+    Q+ +   +     +H 
Sbjct: 61  LAEAEKLRALGWVGPILLLEGCFAPEDLALCERLNLWHVVHCREQIDWL-AVHRGNRTHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NR+G S +                    ++H ACAD+ S       L RF 
Sbjct: 120 VFLKMNTGMNRVGFSPEAYAAAWERLNALPQVGEITHMTHFACADEASGI--DEALARFA 177

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDK----INKSHPMQTVV 236
             + H  G E +LA+S+ +L+    P       RPGI+LYG +            ++  +
Sbjct: 178 RGVGHLPG-ERTLANSAAVLVHGADPRVATDWVRPGIALYGSSPTGLALDAAHWKLRPAM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + +I I+   AGE V YG +    R   I V A GYADGYP                
Sbjct: 237 SLRSELIDIQHIAAGECVGYGARFTAPRPMRIGVVACGYADGYPRVAPN----------- 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIE----VGDYIQIFGPD----IKLDDVAL 348
           G    + G    ++G+++MDM   D+    +      +G  + ++G D    + +D+VA 
Sbjct: 286 GTPIVVDGVRTQLVGRVSMDMITVDLEPVFAAGNRPMIGSPVLLWGQDAQAELSIDEVAA 345

Query: 349 ASGTTNYDLLVRIGTRYA-KF 368
           A+GT  Y+L+  +  R   + 
Sbjct: 346 AAGTLGYELMCALAQRVPVRV 366


>gi|254460815|ref|ZP_05074231.1| alanine racemase [Rhodobacterales bacterium HTCC2083]
 gi|206677404|gb|EDZ41891.1| alanine racemase [Rhodobacteraceae bacterium HTCC2083]
          Length = 344

 Score =  338 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 130/363 (35%), Positives = 183/363 (50%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW +++  S  A T AVVK +AYG G  + A  L   G + FFV   EE 
Sbjct: 6   LSIDLAAIAANWSALDRFS-TAETGAVVKADAYGTGIGRAARRLAQTGARKFFVAVAEEA 64

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R    P   I++L G   G   +I D +LIP++SS+ Q+  + + +      P+ +Q
Sbjct: 65  ADIRQAIGPDPEIYILSGHMSGDTDMIADLHLIPLLSSIDQMLRHFEAL---PGTPFGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+   E          +      LI+SHLACADDPS  +N+ QL  F  +  
Sbjct: 122 LDTGMNRLGMEAGEWEAVKSLVLPQN---PMLIMSHLACADDPSHPMNAQQLAAFIEMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
                  SLA++ GILLGP YHF +TRPGI LYGG    + +     VV+    II  R 
Sbjct: 179 GI-DAPRSLAATGGILLGPEYHFDVTRPGIGLYGGLPFADAT----PVVSLSLPIIQTRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
            LAGE V YG      RDS I   + GYADG    +                 F  G  V
Sbjct: 234 VLAGESVGYGNTWIAERDSRIVTVSCGYADGILRVMG-----------PKTHFFANGTAV 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P+ G+I+MD    D+TD   +     +++ GP   ++ +A  +GT  Y++L  +G RY++
Sbjct: 283 PVAGRISMDSICIDVTDVSDLP--SALELLGPQQSIETLAQNAGTIGYEILTSLGARYSR 340

Query: 368 FYT 370
            Y 
Sbjct: 341 RYV 343


>gi|83942625|ref|ZP_00955086.1| alanine racemase [Sulfitobacter sp. EE-36]
 gi|83846718|gb|EAP84594.1| alanine racemase [Sulfitobacter sp. EE-36]
          Length = 344

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 191/363 (52%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW ++N ++G   T AV+K NAYGLG +++AP L   G + FFV   EEG
Sbjct: 6   LSIDLNAIAANWQALNKMTG-CDTGAVIKANAYGLGVDRVAPVLAAQGARKFFVAVAEEG 64

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR    P   I V  G  PG   +I    L P+I+SV Q+      +     H + +Q
Sbjct: 65  VALRRVLGPGPAINVFAGHMPGDADMIRSAALTPMINSVDQM---IAHVEALPGHRFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG+   E       +  +     +LI+SHLACAD+P+  +N+ QL+ FR +  
Sbjct: 122 LNSGMNRLGMDPAEWAALRDIALAQN---PTLIMSHLACADEPNHPMNARQLKTFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GI+LG +YHF LTRPGI +YGG    +       VVT +  +I +R+
Sbjct: 179 GL-NVPRSLAATGGIMLGRDYHFDLTRPGIGVYGGLPFADA----MPVVTLDVPVIQVRE 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YG      R +L+A  A GYADG    L             G     +G  +
Sbjct: 234 VATGQPVGYGCAWTAPRPTLVATVAAGYADGLIRALGN-----------GATFTHEGRKL 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+++MD+   D+T    +    ++Q+ G    +D VA  +GT  Y++L  +G RY +
Sbjct: 283 PVVGRVSMDLITVDVTSLTEVPE--HLQLIGNYQSVDTVAGFAGTIGYEVLTALGARYDR 340

Query: 368 FYT 370
            Y 
Sbjct: 341 VYV 343


>gi|293606270|ref|ZP_06688632.1| alanine racemase [Achromobacter piechaudii ATCC 43553]
 gi|292815335|gb|EFF74454.1| alanine racemase [Achromobacter piechaudii ATCC 43553]
          Length = 375

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 93/385 (24%), Positives = 155/385 (40%), Gaps = 40/385 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55
             +   + ++AL +N  ++                   AV+K NAYG G E+        
Sbjct: 3   RPISATVSVSALAHNLATVRRHLEQTAAAVGGLPPSIWAVIKANAYGHGIEQAVTGFSK- 61

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
             Q   +  ++E V+ R       I +L G   P    +I   +L   + +  QL   ++
Sbjct: 62  -AQGLAMLDLDEAVRCREAGWGGPILLLEGFFKPADLDLIDRYHLSTTVHNREQLDMLAR 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                      L++++G NRLG S      A +       +        ++H ACAD P 
Sbjct: 121 AR-FSRRVDIMLKLNSGMNRLGFSPASYPAAFERAMLLQQQGTLGSVGKMTHFACADGPQ 179

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLG------PNYHFQLTRPGISLYGGTDK 225
                 QL  F ++     G   S+ +S+  L                RPGI LYG +  
Sbjct: 180 GVT--EQLALFNSVTHKLPG-TISVCNSAATLRFADIAVSSPTQTHWVRPGICLYGASPF 236

Query: 226 INK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            +    S  ++  +T  + II +++  AG+ V YG   +  R   I + A GYADGYP  
Sbjct: 237 ADAQAASFGLKPALTLSSEIIAVQELKAGDSVGYGAIFRAERAMRIGIVACGYADGYPRH 296

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-I 341
            +            G    + G    ++G+++MDM + D+    +  VG  + ++G D  
Sbjct: 297 AT-----------TGTPVVVAGIRTQLVGRVSMDMLIVDLDPVPAAGVGTPVVLWGEDGP 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYA 366
            +DDVA A+GT  Y+LL  +  R  
Sbjct: 346 SVDDVAQAAGTIGYELLCALAPRVP 370


>gi|68536824|ref|YP_251529.1| hypothetical protein jk1734 [Corynebacterium jeikeium K411]
 gi|260579183|ref|ZP_05847073.1| D-alanine racemase [Corynebacterium jeikeium ATCC 43734]
 gi|68264423|emb|CAI37911.1| alr [Corynebacterium jeikeium K411]
 gi|258602669|gb|EEW15956.1| D-alanine racemase [Corynebacterium jeikeium ATCC 43734]
          Length = 572

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 106/401 (26%), Positives = 172/401 (42%), Gaps = 44/401 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M       L +DL A+ +N       +  A   AVVK +AY  G + +APA+ +AGV+  
Sbjct: 3   MSDRHLAELVVDLDAIAHNVRVFREAAAPAGVLAVVKADAYNHGVDVVAPAMLDAGVEQL 62

Query: 61  FVTSVEEGVKLRL--YTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISS-------V 106
            V ++ E + LR            A I             +F  ++   + S       V
Sbjct: 63  GVATLGEALHLREILAGLGESYASAPITAWMWTPGEDLAEVFAADINVGVPSLAHARSLV 122

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLA 165
            Q     +           L VDTG +R G+S  E  +      +K +L +++ +++H+A
Sbjct: 123 DQAEKTQREAQVSAPVRVTLMVDTGLSRSGVSPAEWRETVELLASKTELVEVTAVMTHMA 182

Query: 166 CADDPSSHVNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLY 220
            ADDP S  N++Q  RF   I        +     +A++   L  P+  +QL RPG+ LY
Sbjct: 183 SADDPKSEANNLQAARFAEAIEFCRSRGLRVPCNHIANTPATLHRPDLAYQLVRPGVGLY 242

Query: 221 GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           G    I     ++  +T  AR+   R    GE VSY    +  RD+  AV A+GYADG P
Sbjct: 243 GIDP-IGVDVELRAAMTLRARVTTTRVVPKGEGVSYSHTWRAQRDTRTAVVALGYADGLP 301

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD----------SLSIEV 330
            ++SG             +  I G   P +G++ MD  + ++            +  ++ 
Sbjct: 302 RSVSGKM-----------QVTINGKTYPQIGRVCMDQIVVELGPADGAEGSTNGAADVKP 350

Query: 331 GDYIQIFGP-DIKLDDVALASGTTNYDLLVRI-GTRYAKFY 369
           GD+  IFG      D+ A  +GT +Y++L    G R  + +
Sbjct: 351 GDWAVIFGEGGNSADEFAELAGTISYEVLTMPRGPRVKRVF 391


>gi|207859294|ref|YP_002245945.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206711097|emb|CAR35471.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 368

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 108/362 (29%), Positives = 171/362 (47%), Gaps = 15/362 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           V LR      A + +L G+ P    +     + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRKILSADAMVVLLNGVMPQAMPLCCAQQITPLLNSVDQVMAWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 193

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+G   +   S P++   T    I+ ++
Sbjct: 194 EAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLSILRVQ 252

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L                   +G  
Sbjct: 253 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNLRPPAG-----------VCWRGVR 301

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 302 LPVLGRVCMDSFMVDASAIMP-TPGDVVEFIGVSQTLEEVAAACDTIPYEIMTRLGGRFR 360

Query: 367 KF 368
           + 
Sbjct: 361 RI 362


>gi|227485012|ref|ZP_03915328.1| possible alanine racemase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237009|gb|EEI87024.1| possible alanine racemase [Anaerococcus lactolyticus ATCC 51172]
          Length = 372

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 160/369 (43%), Gaps = 29/369 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L++++  ++NN   +  L+  ++  AVVK NAYGLG + +   + +  V  F V  + EG
Sbjct: 6   LEVNIDKIRNNIIKIKNLNHRSKFCAVVKANAYGLGSDIVGREIEDL-VDYFAVARLSEG 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    +  I +L  +        F+ ++   +  +       ++   G      L +
Sbjct: 65  ILLRRAGIKKPILILGYVGLDDISKCFENDIDISVYDLG---LAKEIDKLGYKLKAHLVL 121

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  R+G    +  +           ++    SH + AD+  +     Q E F  +I  
Sbjct: 122 DTGHGRIGFRADQIEN-IRQLKTLSNIKIISAFSHFSTADEEDNSFTEKQEEIFDYIIEQ 180

Query: 189 YKG---IE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAEA 240
            K    +E   LA+S+G +    +   + R GI LYG         N    ++      +
Sbjct: 181 IKNDFDLEFVHLANSAGTIRQKIFK-DMYRIGICLYGLYPSEVVRDNTEIKLEKTFKLYS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +  I+    G  +SYG     ++   +A  AIGYADGY    S +           GK 
Sbjct: 240 FVHFIKNIDKGTPISYGRTFVSSKPMKVATVAIGYADGYCRAFSNM-----------GKV 288

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           +I GY   +LG++ MD  M D+T  L +++GD ++I+     +D  A   GT +Y+L+  
Sbjct: 289 YINGYGCKVLGRVCMDQMMVDVTG-LDVKIGDRVEIYKE---IDKDANLIGTISYELMTN 344

Query: 361 IGTRYAKFY 369
           I  R  + Y
Sbjct: 345 ISMRVKRIY 353


>gi|227818945|ref|YP_002822916.1| alanine racemase, catabolic [Sinorhizobium fredii NGR234]
 gi|227337944|gb|ACP22163.1| alanine racemase, catabolic [Sinorhizobium fredii NGR234]
          Length = 377

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 190/374 (50%), Gaps = 33/374 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNA---------YGLGCEKIAPALYNAGVQD 59
           L IDL AL+ N+  ++A    A                   YGLG E+++ AL+  G + 
Sbjct: 23  LTIDLAALQRNYRKLSAAVAPAS---------AAAVVKADAYGLGAEQVSKALHAQGCRH 73

Query: 60  FFVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
           FFV  + E +KLR   P    IFVL G+ PG E    + +++PV++S+ Q   +S     
Sbjct: 74  FFVAHLPEALKLRPLLPNDTHIFVLNGLQPGAEITCTNADVVPVLNSLEQFRRWSFTAEK 133

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G   P  LQ DTG +RLG+  QE              ++  I+SH+ACAD+     N+ 
Sbjct: 134 LGRVFPAVLQFDTGMSRLGVPPQERTALAAELKGCGNLEILFIMSHVACADEADKKQNAD 193

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           QL   R + + + G++   A+S G+ LG +YH  L RPGI+LYGG     + +PM+ VV 
Sbjct: 194 QLAEMRVIAAEFAGLDVCFANSGGVFLGGDYHGVLARPGIALYGGAPTAGRYNPMEPVVR 253

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E  +I  R   AG  V YGG    +  + +A  A GYADG P +LS             
Sbjct: 254 LEVAVIQTRTVPAGTRVGYGGAHVTSAKTRLATIAAGYADGLPRSLSDC----------- 302

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G  F  G  +PI+G+++MD    DIT      + +G  +++ GP   L+DVA A+GT +Y
Sbjct: 303 GAVFYDGVRLPIVGRVSMDSITVDITALPEGTLSLGSLVEVLGPHQTLEDVAEAAGTISY 362

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +G RY + Y
Sbjct: 363 EILTSLGRRYERRY 376


>gi|314922758|gb|EFS86589.1| alanine racemase [Propionibacterium acnes HL001PA1]
 gi|314965676|gb|EFT09775.1| alanine racemase [Propionibacterium acnes HL082PA2]
 gi|315094626|gb|EFT66602.1| alanine racemase [Propionibacterium acnes HL060PA1]
 gi|315105345|gb|EFT77321.1| alanine racemase [Propionibacterium acnes HL050PA2]
 gi|327328857|gb|EGE70617.1| alanine racemase [Propionibacterium acnes HL103PA1]
          Length = 352

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 141/361 (39%), Gaps = 24/361 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIF 81
           M   +G+ +    VK +AYG G  +++  +          V +V EG +L        I 
Sbjct: 1   MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGITLPIL 60

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQ 140
            L    P        + +   +     L   SK     GV+    + VD+G  R+GL  +
Sbjct: 61  KLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHIAVDSGMGRIGLCPE 120

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTLIS-----HYKGIEA 194
              + T  +   K  ++  + +HL  +D P        +++ F T +S            
Sbjct: 121 RLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVSLVETHRGPFPLV 180

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAEARIILIRKALAGEL 253
            LA+S  IL        + R GI  YG     +     +   ++  + +  ++    G+ 
Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWISHVTFVKTVSVGDT 240

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           + YG     +  + IA   +GYADG    LS             G   I+G + PI+G+I
Sbjct: 241 IGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGYVLIRGSVHPIVGRI 289

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            MD  M D+    ++ VGD + + G      +  DD+A   GT +Y++   I  R  + +
Sbjct: 290 CMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISYEITCAISKRVNRCW 349

Query: 370 T 370
            
Sbjct: 350 V 350


>gi|218961188|ref|YP_001740963.1| Alanine racemase (partial match, alr-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729845|emb|CAO80757.1| Alanine racemase (partial match, alr-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 629

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 163/372 (43%), Gaps = 19/372 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E   ++IDL+A + N + + + L    +   +VK +AYG G  +I+      G     V 
Sbjct: 8   ERSWVEIDLSAFRTNLNILKSFLEPQQQFMMIVKADAYGHGAREISKIACEEGAVYLGVA 67

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122
           + EEG  LRL   QA + +L      +   I D +L   +SS+      +K   +     
Sbjct: 68  NPEEGRLLRLQGCQAPVLILSPCLKNEINTILDNDLAVNVSSLDFARALNKTAKTKNKQA 127

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+VDTG +R G+   E +DF +         +  + +H A A +     +  Q ERF
Sbjct: 128 VVHLKVDTGMHRSGILDSEFIDFFNKIAKMDNLLIEGVFTHFASA-ENDPEFSKQQEERF 186

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
             +I +         + +S+ ++ G   H  L R GI  YG     NK   +Q V+T + 
Sbjct: 187 WNIIDNLPFTPTYLHIDNSNALVNGLGKHSNLVRLGIMAYGIQVPGNKDIALQPVMTFKT 246

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +  I+    GE V Y       +D L  +  IGYADGY   LS             G  
Sbjct: 247 ILSQIKHIAKGESVGYNRSWTAKKDCLYGILPIGYADGYDFMLSNC-----------GVV 295

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNYDL 357
           F+   +  ++G+I+MDM   D++      +GD   + G    + + +++    G  +Y+L
Sbjct: 296 FLDNKICNVIGRISMDMICVDLSPIEHPAIGDVAILLGGSALETRAENLVSKYGGNSYEL 355

Query: 358 LVRIGTRYAKFY 369
           L ++G R  ++Y
Sbjct: 356 LCQVGRRAKRYY 367


>gi|160941522|ref|ZP_02088855.1| hypothetical protein CLOBOL_06421 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435548|gb|EDP13315.1| hypothetical protein CLOBOL_06421 [Clostridium bolteae ATCC
           BAA-613]
          Length = 394

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 163/382 (42%), Gaps = 29/382 (7%)

Query: 4   NEFLR---LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           NE +R   +++DL  +  N   + A++    + AAVVK + YG G   IAPA+   G   
Sbjct: 10  NEIMRDTVVEVDLDRIAFNVRQIKAMAGPGTQVAAVVKADGYGHGALGIAPAIMENGASL 69

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V ++ E V+L+   P   + ++          + +  +I  I ++ Q    ++L S  
Sbjct: 70  LAVATLSEAVELKQAYPGYPVLIMGLTPDRLLPYVLEYGIIQTIDTLAQARLLNRLASEK 129

Query: 120 VSHPY-ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  ++ DTGF+R+G     E+LD      +    +   I SHLA         N V
Sbjct: 130 KQQAVIHIKYDTGFHRIGFPDCPESLDEIRQICSMPWLKPEGIYSHLAL---KDDQSNQV 186

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q   F   ++  +          +A S   +  P Y   + R G  +YG          +
Sbjct: 187 QFRCFMDAVNELESEGCHFRYKHIADSIAAVDFPEYRLDMIRAGAIVYGLKGFHKGQLDI 246

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T + RI  I   L G+ VSY       +D+ +A    GYADGYP  L G       
Sbjct: 247 RQALTFKTRISHITPVLKGQGVSYDYLWTAPQDTRVAALPFGYADGYPRNLRGKAM---- 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                    ++G  VP++G I MD  M D+TD    ++GD + I+G      + +D V+ 
Sbjct: 303 -------VTLRGKQVPVIGVICMDQCMIDLTDVPEAQIGDQVIIYGDGSGNTLDIDAVSR 355

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
            +GT   +++ R+  R  + Y 
Sbjct: 356 LAGTNKNEIVARLTRRPPRIYV 377


>gi|323974227|gb|EGB69357.1| alanine racemase domain-containing protein [Escherichia coli
           TW10509]
          Length = 355

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 111/356 (31%), Positives = 171/356 (48%), Gaps = 15/356 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++L A+ +N+ ++      A+  AV+K NAYGLG E IAPALY A  + FFV  + EGV 
Sbjct: 3   VNLAAIVDNYRTLARHVAPAQCGAVLKANAYGLGAEAIAPALYAANCRIFFVAQLSEGVA 62

Query: 71  LRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQV 128
           LR   P  A + VL G+ P      +   + P+++S+ Q+  +  L+          +Q+
Sbjct: 63  LRKILPTDAMVVVLNGVMPEAMAYCYAQQITPLLNSIDQVMAWLTLLETRQQRRAVMIQL 122

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G +RLG+  Q+ +        +       IISHLA AD P   +N  Q   F+   + 
Sbjct: 123 DSGMSRLGVMPQQLMRLAAIFRERNWPAPDYIISHLANADRPDHALNVAQHALFQQAKTV 182

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
           +     SLA+S G+ L P +   L RPGI+L+G   +   S P++   T    I+ ++  
Sbjct: 183 FPSSRFSLANSCGMFLQPGWREDLCRPGIALFGVA-QPWFSRPLKPAFTLTLTILRVQDV 241

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            AG  V YG     TR   IA  + GYADG P  +                   +G  +P
Sbjct: 242 PAGTPVGYGSTITATRPLRIATISAGYADGVPRNMRPPAG-----------VCWRGVRLP 290

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
           +LG++ MD  M D +       GD ++  G    L+ VA A  T  Y+++ R+G R
Sbjct: 291 VLGRVCMDSFMVDASAVTP-TAGDKVEFIGAGQTLEQVAAACNTIPYEIMTRLGAR 345


>gi|310815865|ref|YP_003963829.1| alanine racemase [Ketogulonicigenium vulgare Y25]
 gi|308754600|gb|ADO42529.1| alanine racemase [Ketogulonicigenium vulgare Y25]
          Length = 345

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 182/362 (50%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW  + A+S  A   AV+K +AYG G  ++  AL  AGV+ FFV   EEG
Sbjct: 6   LTIDLDAIIGNWRKLAAMS-RAEAGAVLKADAYGTGAARVGAALAEAGVRKFFVAVAEEG 64

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR    P   IFVL G       +I   NL PV++S  Q     +        P+A+Q
Sbjct: 65  VALREAVGPAPEIFVLSGHGTTDTALIRQLNLTPVLNSPQQ---LRRQFDALPGRPFAIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG   ++    T            LI+SHLACAD+P   +N+ QL+ F+ +  
Sbjct: 122 LDTGMNRLGFEWEDWAAVTDEVL---GAGPRLIMSHLACADEPDHPMNAYQLDLFKQMTE 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             + +  SLA++ GILLGP+YHF L RPGI L+G       +      +  +  +I  R 
Sbjct: 179 GMR-VSRSLAATGGILLGPDYHFDLVRPGIGLHGAAPYAQGAQ----ALQLDLPVIQTRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
            + GE+V YG   +  R + +A  A GYADG    L             G   +      
Sbjct: 234 LIEGEVVGYGNTWQARRPTRVATLAAGYADGVLRVLG-----------AGTNVYSGDIAC 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI+G+I+MD+   DITD  +      + + GP   +DD+A+ + T  Y++L  +  RY++
Sbjct: 283 PIIGRISMDLITVDITDLDADPE--VLTLIGPQQSVDDLAVTAKTIGYEILTSLSPRYSR 340

Query: 368 FY 369
            Y
Sbjct: 341 QY 342


>gi|148244756|ref|YP_001219450.1| alanine racemase [Candidatus Vesicomyosocius okutanii HA]
 gi|226711067|sp|A5CWE3|ALR_VESOH RecName: Full=Alanine racemase
 gi|146326583|dbj|BAF61726.1| alanine racemase [Candidatus Vesicomyosocius okutanii HA]
          Length = 351

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 106/360 (29%), Positives = 172/360 (47%), Gaps = 22/360 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I  +ALK+N   +   S N++  ++VK NAYG     I P + ++      V+ + E 
Sbjct: 7   VSISQSALKHNLLVVKENSPNSKIVSMVKANAYGHKINLINPIINHS--DLLAVSEISEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            KLR  T +  I +L G+   QE +     N   V+    Q+T    + +        ++
Sbjct: 65  KKLRKIT-KKPILLLSGVIEDQELQQAIKLNCQIVVHDKTQIT---TINNTKQPINIWIK 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG +RLGLS  E  D      N  L     ++SH ACAD+ +  +N  QL  F+   S
Sbjct: 121 INTGMHRLGLSTHEYFDCIKLLANNPLINTQCVMSHFACADEINHPMNQSQLFEFKK--S 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            Y   + S+A+S+ IL  P  HF   RPGI LYG +     ++ ++ V+   A I+ I+ 
Sbjct: 179 TYHTTKRSMANSAAILSNPASHFDYVRPGIMLYGVSPFEIINNHLKPVMQISAPIMSIKT 238

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YG      + + IA   IGY DGYP                G    I   + 
Sbjct: 239 IQTGDSVGYGATWIAKKSTTIATIGIGYGDGYPRHAKN-----------GTPVLINNNLC 287

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRYA 366
           P++G+++MD+   DI++     VGD + ++G   ++++ +A  S T  Y+LL  I +R A
Sbjct: 288 PLIGRVSMDLICVDISNV-KASVGDNVILWGAQKLRIETIAKYSDTIAYELLTGISSRVA 346


>gi|289641127|ref|ZP_06473295.1| alanine racemase [Frankia symbiont of Datisca glomerata]
 gi|289509068|gb|EFD29999.1| alanine racemase [Frankia symbiont of Datisca glomerata]
          Length = 442

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 162/381 (42%), Gaps = 35/381 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             +DL A++ +  ++ A +GNA T AVVK + YG G    A A   AG     V  +EEG
Sbjct: 12  AIVDLDAVRASVATLVARAGNAATMAVVKSDGYGHGMSACARAAVEAGASWLGVAVIEEG 71

Query: 69  VKLRLYTPQARIFVLYGIH--PGQEKIIFDTNLIPVISSVPQL--TFYSKLMSCGVSHPY 124
           + LR       +F        P  + +  D +L     S P +     +     G     
Sbjct: 72  LALRAAGFTVPVFAWLTAPGEPLADALAADIDLSA---SAPWMLAEIAAAARHTGRRARV 128

Query: 125 ALQVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G +  +     D       + L +++ + SHLA AD P       Q+ R
Sbjct: 129 HLKADTGLGRGGATEADWPSLCDAAAALAAEDLIEVTGVWSHLAFADSPGHPTVRGQIGR 188

Query: 182 FRTL--ISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---- 232
           F     I+   G+      LA+S+  L+ P+  F + RPGIS+YG +       P     
Sbjct: 189 FADAVTIAEKTGLRPQVRHLANSAATLVSPDARFDMVRPGISVYGLSPGPQVGSPAALGL 248

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T  AR+ L ++  AG  VSY  +      S + +  +GYADG P            
Sbjct: 249 RPAMTLTARLALAKRVPAGSGVSYAHRYTTAVASTLGLVPLGYADGVPRAAGNT------ 302

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                 +  + G    I G + MD  + D+ D   ++ GD + +FG     +    D A 
Sbjct: 303 -----AEVLLAGRRRRIAGTVCMDQFVVDVGDDP-VQAGDQVILFGSGEHGEPTAQDWAD 356

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A GT NY+++ R+G R  + +
Sbjct: 357 ALGTINYEIVTRVGVRVPRVH 377


>gi|84497889|ref|ZP_00996686.1| putative alanine racemase [Janibacter sp. HTCC2649]
 gi|84381389|gb|EAP97272.1| putative alanine racemase [Janibacter sp. HTCC2649]
          Length = 391

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 151/380 (39%), Gaps = 28/380 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             + IDL A+ +N   ++  S  A   AVVK N YG G    A A    G     V    
Sbjct: 18  AWVTIDLAAIADNVRELDRRSPGAEVMAVVKANGYGHGLVPSARAAVAGGATWLAVAQFN 77

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYA 125
           E + LR       +               D ++   +S+   L    +   + G +    
Sbjct: 78  EALDLRAAGVTTPLLTWLYAPGVDFGAAIDADIDISVSAPWALDAVVAAARARGRAARIH 137

Query: 126 LQVDTGFNRLGLSLQEALDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++VDTG  R G   Q   D          +   ++  + SH A AD P       Q +RF
Sbjct: 138 VKVDTGLGRNGALGQGWTDLIAALGPVVAEGAVEVIGVWSHFARADAPQDPTVLGQRDRF 197

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----Q 233
                  +  GI      LA+S+  L  PN HF L RPG+++YG +   +   P     +
Sbjct: 198 VEAAEELERAGIRPQLRHLANSAATLTNPNAHFDLVRPGLAVYGLSPVPDLGSPQDFGLR 257

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   AR+ L+++A  G+ VSYG       D+++ +  IGYADG P     +       
Sbjct: 258 EAMRVTARLALVKEASTGQGVSYGHIYTTPEDTVLGLVPIGYADGIPRHAGNV------- 310

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
               G   +    + + G++ MD  + D+    +   GD + I G     +    D A A
Sbjct: 311 ----GPVKVGDRRLTVAGRVCMDQFVLDLGAGYAGGAGDEVVILGRGVDDEPTAQDWATA 366

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY+++ R+  R  + +
Sbjct: 367 IDTINYEIVTRMSDRLPRVF 386


>gi|308232460|ref|ZP_07664093.1| alanine racemase alr [Mycobacterium tuberculosis SUMu001]
 gi|308370262|ref|ZP_07420828.2| alanine racemase alr [Mycobacterium tuberculosis SUMu002]
 gi|308371343|ref|ZP_07424633.2| alanine racemase alr [Mycobacterium tuberculosis SUMu003]
 gi|308372542|ref|ZP_07667405.1| alanine racemase alr [Mycobacterium tuberculosis SUMu004]
 gi|308373739|ref|ZP_07433510.2| alanine racemase alr [Mycobacterium tuberculosis SUMu005]
 gi|308374873|ref|ZP_07667888.1| alanine racemase alr [Mycobacterium tuberculosis SUMu006]
 gi|308376117|ref|ZP_07446099.2| alanine racemase alr [Mycobacterium tuberculosis SUMu007]
 gi|308377347|ref|ZP_07441912.2| alanine racemase alr [Mycobacterium tuberculosis SUMu008]
 gi|308378321|ref|ZP_07482199.2| alanine racemase alr [Mycobacterium tuberculosis SUMu009]
 gi|308379509|ref|ZP_07486543.2| alanine racemase alr [Mycobacterium tuberculosis SUMu010]
 gi|308380696|ref|ZP_07669258.1| alanine racemase alr [Mycobacterium tuberculosis SUMu011]
 gi|308213938|gb|EFO73337.1| alanine racemase alr [Mycobacterium tuberculosis SUMu001]
 gi|308324884|gb|EFP13735.1| alanine racemase alr [Mycobacterium tuberculosis SUMu002]
 gi|308329065|gb|EFP17916.1| alanine racemase alr [Mycobacterium tuberculosis SUMu003]
 gi|308332926|gb|EFP21777.1| alanine racemase alr [Mycobacterium tuberculosis SUMu004]
 gi|308336536|gb|EFP25387.1| alanine racemase alr [Mycobacterium tuberculosis SUMu005]
 gi|308340412|gb|EFP29263.1| alanine racemase alr [Mycobacterium tuberculosis SUMu006]
 gi|308344272|gb|EFP33123.1| alanine racemase alr [Mycobacterium tuberculosis SUMu007]
 gi|308348222|gb|EFP37073.1| alanine racemase alr [Mycobacterium tuberculosis SUMu008]
 gi|308352946|gb|EFP41797.1| alanine racemase alr [Mycobacterium tuberculosis SUMu009]
 gi|308356810|gb|EFP45661.1| alanine racemase alr [Mycobacterium tuberculosis SUMu010]
 gi|308360758|gb|EFP49609.1| alanine racemase alr [Mycobacterium tuberculosis SUMu011]
          Length = 347

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 152/352 (43%), Gaps = 26/352 (7%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
            AVVK + YG G  ++A     AG  +  V +V+E + LR     A +            
Sbjct: 1   MAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHPPGIDFG 60

Query: 93  IIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF---THN 148
                ++   +SS+ Q       +   G +    ++VDTG NR G+   +          
Sbjct: 61  PALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGLNRNGVGPAQFPAMLTALRQ 120

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK--GIE---ASLASSSGIL 203
           +  +   +L  ++SH+  AD P   +N VQ +RF   ++  +  G+    A L++SS  +
Sbjct: 121 AMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATM 180

Query: 204 LGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262
             P+  F L RPGI++YG +         +   +T +  + L++   AGE VSYG     
Sbjct: 181 ARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIA 240

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
            RD+ +A+  IGYADG   +L G             +  I G   P +G+I MD  M D+
Sbjct: 241 PRDTNLALLPIGYADGVFRSLGGRL-----------EVLINGRRCPGVGRICMDQFMVDL 289

Query: 323 TDSL-SIEVGDYIQIFGPDI----KLDDVALASGTTNYDLLVRIGTRYAKFY 369
                 +  GD   +FGP I       D A   GT +Y+++     R  + Y
Sbjct: 290 GPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRITRTY 341


>gi|89899300|ref|YP_521771.1| alanine racemase [Rhodoferax ferrireducens T118]
 gi|122480109|sp|Q221R3|ALR_RHOFD RecName: Full=Alanine racemase
 gi|89344037|gb|ABD68240.1| alanine racemase [Rhodoferax ferrireducens T118]
          Length = 374

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 151/384 (39%), Gaps = 39/384 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL++N       + +A+  A+VK NAYG G E++   L       F +  
Sbjct: 3   RPIQATIHTAALRHNLARARLAAPDAKVWAIVKANAYGHGIERVFEGLRA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R    +  I +L G+      ++    +L   +    Q+   +      V+  
Sbjct: 61  LDEAQRVRALGWRGPILLLEGVFELRDLELCSRLDLWHTVHCDEQIDMLASH-KTKVAQR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + Q                   +I+H + AD         Q+  F 
Sbjct: 120 VFLKMNSGMNRLGFTPQRYRAAWTRLNALPQVDEISLITHFSDADGARGIT--EQMAVFA 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHF--------QLTRPGISLYGGTDKINK----SHP 231
            +     G E +L++S+  LL                 RPGI++YG      +       
Sbjct: 178 EVTRDLPG-ERTLSNSAATLLHTPARQPGDGFVASDWVRPGIAIYGSAPDFPQHSATDWG 236

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +Q  +T  A+II  +    G  V YG      +   + V A GYADGYP           
Sbjct: 237 LQPSMTLTAKIIATQTVDTGASVGYGSTFVADKPIQVGVVACGYADGYPRL--------- 287

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL----SIEVGDYIQIFGPD-----IK 342
                G    + G     +G+++MDM   D++        + +G  + ++G       + 
Sbjct: 288 --CPTGTPVLVNGIRTRTVGRVSMDMLAVDLSAVTAAGGQVGIGSEVTLWGRAANGLVLG 345

Query: 343 LDDVALASGTTNYDLLVRIGTRYA 366
           +D+VA  +GT  Y+L+  +  R  
Sbjct: 346 IDEVAQPAGTVGYELMCALAPRVP 369


>gi|213964899|ref|ZP_03393098.1| alanine racemase [Corynebacterium amycolatum SK46]
 gi|213952435|gb|EEB63818.1| alanine racemase [Corynebacterium amycolatum SK46]
          Length = 537

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 100/396 (25%), Positives = 170/396 (42%), Gaps = 37/396 (9%)

Query: 1   MHSNEFLRLK--IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M S+    L   ++L A+ +N  ++ A++G +   AVVK + Y  G  + A A  + G  
Sbjct: 1   MTSSAPAILTHTVNLDAITHNVKTVKAIAGVSEFMAVVKADGYSQGALQTARAALDGGAT 60

Query: 59  DFFVTSVEEGVKLRLY-------TPQARIF--VLYGIHPGQEKIIFDTNLIPVISSVPQL 109
              V +++E + +R              I   +         +     N+   + S+   
Sbjct: 61  QLGVATIDEALSVREELRTTLDDGHAIPILAWIWDAAATSLVQRAVAANIDLGLPSMAHA 120

Query: 110 TFYSKL-MSCGVSHPYALQVDTGFNRLGLSL-----QEALDFTHNSFNKKLGQLSLIISH 163
              +    +  V+    + VDTG  R G S+     + A+             ++   +H
Sbjct: 121 LAVANAGRALSVTPRVTVMVDTGLGRSGFSMANGDFEHAVAQLVELHKTGALNITGAFTH 180

Query: 164 LACADDPSSHVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGIS 218
            ACAD+P +     Q + FR  I+  +      +    A+S   L  P+  F + RPG++
Sbjct: 181 FACADEPGNESVDKQAQNFRAAIAALREAGLDELINHAANSPASLSRPDLAFDMVRPGLA 240

Query: 219 LYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
           +YGG   +  +H ++  +  EA +IL++K  AG+ VSYG      RD+ I +   GYADG
Sbjct: 241 IYGGEPIVGSTHGLRPAMRWEASVILVKKLPAGQSVSYGQTWTADRDTTIGIVPCGYADG 300

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
              + SG             +  I G   P +G++ MD  + D+     +EVGD   I G
Sbjct: 301 MMRSASGRF-----------EVSINGTRYPQVGRVCMDQFVVDLGPDTDVEVGDTAVIVG 349

Query: 339 P----DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
                +  LDD+A ASGT NY++L     R  + + 
Sbjct: 350 DPTLGEPGLDDLAKASGTINYEILTAPKGRSERKWV 385


>gi|227832290|ref|YP_002833997.1| Alanine racemase [Corynebacterium aurimucosum ATCC 700975]
 gi|227453306|gb|ACP32059.1| Alanine racemase [Corynebacterium aurimucosum ATCC 700975]
          Length = 365

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 21/371 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+  +DL A+ +N   +      AR   VVK +AY  G E+ AP +  AG   F V ++
Sbjct: 1   MLKTTVDLNAIAHNVARVKEAVAPARLMCVVKADAYAHGIERCAPVMAQAGADAFGVATL 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            E V LR       I                 ++   I S+        L++        
Sbjct: 61  AEAVALRKVIDNLPIAAWLWEPTEDLAPALAADIQIGIPSL---AHAQALIAAETPTEAF 117

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + V+TG +R G+      +      +     +  ++SH ACAD+P    N  Q   FR  
Sbjct: 118 VMVETGMHRSGVDKHVWEETFRLLADAPHITVLGLMSHFACADEPEHPHNDHQESEFRQA 177

Query: 186 ISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           ++  + +        LA+S   L  P+  F+  R G++LYG        H ++  +T EA
Sbjct: 178 LALAREVGLECPLNHLANSPAALTRPSARFEQVRVGLALYGLEPVAGLDHGLEPAMTWEA 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ ++   AGE   YG       +  +A  ++GYADG P    G             + 
Sbjct: 238 SVVAVKPISAGESTCYGLTWTAESERELATVSVGYADGLPRAFQGAL-----------QV 286

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDLL 358
            I G + P +G++ MD  + D+  +   +  GD   IFG   +    +A A+GT NY+++
Sbjct: 287 GIGGELYPQVGRVCMDQIVVDLGSNPHGVRAGDTAVIFGRGGMSATGLAEAAGTINYEVV 346

Query: 359 VRIGTRYAKFY 369
            R   R  + Y
Sbjct: 347 CRPTGRTERTY 357


>gi|262183853|ref|ZP_06043274.1| alanine racemase [Corynebacterium aurimucosum ATCC 700975]
          Length = 367

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 21/371 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+  +DL A+ +N   +      AR   VVK +AY  G E+ AP +  AG   F V ++
Sbjct: 3   MLKTTVDLNAIAHNVARVKEAVAPARLMCVVKADAYAHGIERCAPVMAQAGADAFGVATL 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            E V LR       I                 ++   I S+        L++        
Sbjct: 63  AEAVALRKVIDNLPIAAWLWEPTEDLAPALAADIQIGIPSL---AHAQALIAAETPTEAF 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + V+TG +R G+      +      +     +  ++SH ACAD+P    N  Q   FR  
Sbjct: 120 VMVETGMHRSGVDKHVWEETFRLLADAPHITVLGLMSHFACADEPEHPHNDHQESEFRQA 179

Query: 186 ISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           ++  + +        LA+S   L  P+  F+  R G++LYG        H ++  +T EA
Sbjct: 180 LALAREVGLECPLNHLANSPAALTRPSARFEQVRVGLALYGLEPVAGLDHGLEPAMTWEA 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ ++   AGE   YG       +  +A  ++GYADG P    G             + 
Sbjct: 240 SVVAVKPISAGESTCYGLTWTAESERELATVSVGYADGLPRAFQGAL-----------QV 288

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDLL 358
            I G + P +G++ MD  + D+  +   +  GD   IFG   +    +A A+GT NY+++
Sbjct: 289 GIGGELYPQVGRVCMDQIVVDLGSNPHGVRAGDTAVIFGRGGMSATGLAEAAGTINYEVV 348

Query: 359 VRIGTRYAKFY 369
            R   R  + Y
Sbjct: 349 CRPTGRTERTY 359


>gi|294630935|ref|ZP_06709495.1| alanine racemase [Streptomyces sp. e14]
 gi|292834268|gb|EFF92617.1| alanine racemase [Streptomyces sp. e14]
          Length = 391

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 161/373 (43%), Gaps = 32/373 (8%)

Query: 17  KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76
           + N  ++   +  A   AVVK +AYG G  + A A   AG       + EE + LR    
Sbjct: 2   RANVRALRERTPGAALMAVVKSDAYGHGAVRCARAAVAAGATWLGTATPEEALALRAAGI 61

Query: 77  ---QARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQVDTGF 132
              QAR+        G  +   + ++   +S +       +   + G      L+ DTG 
Sbjct: 62  APEQARVLCWLWTPGGPWREAVEADVDVSVSGLWALAEVRAAARAAGRPARVQLKADTGL 121

Query: 133 NRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
            R G    +  +    +   +   L +++ + SH ACAD+P     + QL+RFR + +H 
Sbjct: 122 GRNGCQPADWPELVAEALRAEAEGLIRITGLWSHFACADEPGHPSIAAQLDRFREMTAHA 181

Query: 190 --KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240
             +G+      +A+S   L  P  HF L R GI+LYG +            ++ V+T  A
Sbjct: 182 ETRGVRPEVRHIANSPAALTIPESHFDLVRTGIALYGISPAPELGVPADFGLRPVMTLSA 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            + L++    G  +SYG       ++ + +  +GYADG P   SG            G  
Sbjct: 242 SLALVKHVPGGHGISYGHHYVTPGETTLGLVPVGYADGIPRHASGT-----------GPV 290

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYD 356
            + G    + G+I MD  + D+      EVG    +FGP    +   +D A A+GT  Y+
Sbjct: 291 LVGGKWRTVAGRIAMDQFVVDLGGDEP-EVGARAVLFGPGDGGEPTAEDWAQAAGTIAYE 349

Query: 357 LLVRIGTRYAKFY 369
           ++ RIGTR  + Y
Sbjct: 350 IVTRIGTRVPRVY 362


>gi|239813248|ref|YP_002942158.1| alanine racemase [Variovorax paradoxus S110]
 gi|259710076|sp|C5CX88|ALR_VARPS RecName: Full=Alanine racemase
 gi|239799825|gb|ACS16892.1| alanine racemase [Variovorax paradoxus S110]
          Length = 366

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 155/374 (41%), Gaps = 29/374 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   +   AL++N       + +AR  AVVK NAYG G E++   L   G   F +  
Sbjct: 3   RPILATVHTAALRHNLDRARRAAVDARVWAVVKANAYGHGIERVYEGLR--GADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R    +  + +L G+   ++ ++    +L   +    Q+   +   +      
Sbjct: 61  LAEAERVRALGWRGPVLLLEGVFDARDLELCSRLDLWHTVHCDEQIDMLAAHKTL-KPQR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + +                   +++H + AD       + QLE F 
Sbjct: 120 VFLKMNSGMNRLGFAPERFGSAWTRLNALPQVDEISLMTHFSDADGARGI--AHQLEVFE 177

Query: 184 TLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTA 238
                  G E S+A+S+  L           RPGI LYG      +       +Q  +T 
Sbjct: 178 RATHDLLG-ERSIANSAATLRHARQTRGDWVRPGIVLYGSAPDFPEHDAAHWQLQPTMTL 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             ++I I+   AG+ + YG          I VAA+GYADGYP   +            G 
Sbjct: 237 STKLIGIQTLKAGDTIGYGSNFTAEGPLTIGVAAVGYADGYPRHCN-----------TGT 285

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALASGT 352
              + G    ++G+++MDM   D+T     + G  + ++G        + +D+VA A+GT
Sbjct: 286 PVLVNGVRTRMVGRVSMDMITVDLTPVPEAKFGTEVTLWGRSAVSGAVLPIDEVAQAAGT 345

Query: 353 TNYDLLVRIGTRYA 366
             Y+L+  +  R  
Sbjct: 346 VGYELMCAVAPRVP 359


>gi|81429225|ref|YP_396226.1| alanine racemase [Lactobacillus sakei subsp. sakei 23K]
 gi|123563782|sp|Q38V64|ALR_LACSS RecName: Full=Alanine racemase
 gi|78610868|emb|CAI55920.1| Alanine racemase [Lactobacillus sakei subsp. sakei 23K]
          Length = 380

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 154/384 (40%), Gaps = 33/384 (8%)

Query: 5   EFLRLKIDLTALKNNWHS-MNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
              R+ +D  A+  N  + +  L G +     V+K NAYG G   +A A   AG   F V
Sbjct: 7   RPTRILVDQNAIYENIQNELKHLEGTDTVIFPVLKANAYGHGLIPVAEAAQAAGAAGFCV 66

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---G 119
             ++E + LR       I VL    P + ++     +   + S+  L   + +       
Sbjct: 67  ALLDEALALRRANFTEPILVLGITQPSEIELAAANQISLTVGSLEWLQEATAIAQQVPYL 126

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNS 176
              P  L +D+G  R+G+   EA      +F K          + +H A ADDP      
Sbjct: 127 HPVPIHLSIDSGMGRIGMR-DEAELLAAYTFIKAHSDYFDFEGVFTHFATADDPDDTYFK 185

Query: 177 VQLERFRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSH 230
            Q  RF  L++          +++S+  L     +  + R GISLYG         +  +
Sbjct: 186 EQSARFNQLMTALPERPRFVHVSNSATSLWHAACNGNIIRMGISLYGLNPSGNAIPDLPY 245

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P++  +  E+ ++ +++  AG  + YG   + +    I    +GYADG+   + G     
Sbjct: 246 PLKQALGIESELVFVKQVAAGTKIGYGATYEASEGEWIGTIPMGYADGWLRRMQGST--- 302

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                      + G    I+G+I MD  M  +     +  G  +   G     +I L +V
Sbjct: 303 ---------VLVDGQRCEIVGRICMDQMMIRLPKRYPV--GTKVVFVGKSGDDEITLQEV 351

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A  + T +Y+++  +  R  + YT
Sbjct: 352 ADYADTIHYEIICDLSDRIPRVYT 375


>gi|42524510|ref|NP_969890.1| hypothetical protein Bd3124 [Bdellovibrio bacteriovorus HD100]
 gi|39576719|emb|CAE80883.1| alr [Bdellovibrio bacteriovorus HD100]
          Length = 402

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 105/400 (26%), Positives = 174/400 (43%), Gaps = 43/400 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M        +I+L  LK+N   +      A     +VK NAYG G  ++A  L + G++ 
Sbjct: 1   MEMYRRTFAEINLDHLKHNIQVLQKAFPQAPFLCPMVKANAYGHGDVQLARFLESLGIKH 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  +EEG+ LR     A I V  G      + I + N+ PV+SS  Q+     + S  
Sbjct: 61  LGVCLIEEGLLLRRSGVNAEILVFRGFDREGAEKIIEYNMTPVVSSWEQIDHLEAVASD- 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--VNSV 177
                 L+ DTG NRLG   +EA       +  K  +L  +++HL   +D +    +++ 
Sbjct: 120 -PVGIHLKFDTGMNRLGFRPEEAQKLFDRLWQNKKIRLKALVTHLFNGEDATDSQGISAR 178

Query: 178 QLERFRTLISHYK--GIEASLASSSGIL-------------LGPNYHFQL-TRPGISLYG 221
           QL     + + +K   I     +S+GI+               P +      RPG+ +YG
Sbjct: 179 QLRDLNRVSTVFKPFNIFCHALNSAGIMSALQMKDAGNTPADHPLFMQNWGLRPGLMIYG 238

Query: 222 GTDKINKSHPM-QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
                  S    + V++ ++ +   R+   GE VSYGG     +DS+IAV  IGYADGY 
Sbjct: 239 YNPLGQNSFGGLKPVMSLKSHVATYRQLHIGETVSYGGTWTAKQDSVIAVVPIGYADGYH 298

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE-----VGDYIQ 335
             LS   S               G  VP++G I MD  M D+T+ +  +         + 
Sbjct: 299 RILSNQSS-----------VVFAGKRVPLVGSICMDYLMLDVTEVVRGKDLKDFKDQEVT 347

Query: 336 IFGPD-----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +FG       +  +++A+ + +  +++L  +G R  + Y+
Sbjct: 348 LFGFASDGSFLSPEELAVQAKSITWEMLTSVGERVPRIYS 387


>gi|84515510|ref|ZP_01002872.1| alanine racemase [Loktanella vestfoldensis SKA53]
 gi|84510793|gb|EAQ07248.1| alanine racemase [Loktanella vestfoldensis SKA53]
          Length = 345

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/365 (36%), Positives = 200/365 (54%), Gaps = 29/365 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL IDL A+  NW +++A++ N +TAAV+K + YGLG   IA AL+ AGV+ FFV   EE
Sbjct: 5   RLTIDLDAVVANWRALDAMT-NCKTAAVIKADGYGLGSVNIAKALFKAGVRQFFVAVAEE 63

Query: 68  GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
              +R    P+  I V  G   G    I D NL P+++SV Q+T + + +     HP+ +
Sbjct: 64  AAPIRAELGPRPEINVFSGHMKGDTAAIRDLNLTPMLNSVEQVTHHFETL---PGHPFGI 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLGL +QE       + ++     +L++SHLACAD+P   +N  QL  F  + 
Sbjct: 121 QLDTGMNRLGLEMQEWAAIAGLALDQN---PTLVMSHLACADEPDHPMNPHQLANFHMMT 177

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
                +  SL+++ GILLGP+YHF LTRPGI LYG     + +     V+  E  ++ IR
Sbjct: 178 DGIS-VPRSLSATGGILLGPDYHFDLTRPGIGLYGADPFSDGT----PVIELEFPVVQIR 232

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               GE+V YG   +  R S IA  + GYADG   +LS        ++F  GK       
Sbjct: 233 DVAQGEVVGYGNSWQAERASRIATISGGYADGIIRSLSDR------AIFYHGK-----TP 281

Query: 307 VPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             ++G+++MD+   D+TD S   +      +   +  +DDVA  +GT  Y+LL ++G RY
Sbjct: 282 CKLVGRVSMDLMTIDVTDLSEDPKALS---LICAEQTVDDVARRAGTIGYELLTQLGGRY 338

Query: 366 -AKFY 369
             + Y
Sbjct: 339 TRRIY 343


>gi|218551070|ref|YP_002384861.1| Alanine racemase 3 [Escherichia fergusonii ATCC 35469]
 gi|218358611|emb|CAQ91259.1| Alanine racemase 3 [Escherichia fergusonii ATCC 35469]
          Length = 388

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 113/360 (31%), Positives = 174/360 (48%), Gaps = 15/360 (4%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+  A+ +N+  +   +  A+  AV+K NAYGLG E IAPALY A  + FFV  + EGV 
Sbjct: 36  INRAAIVDNYRMLARHAAPAQCGAVLKANAYGLGAETIAPALYAANCRIFFVAQLSEGVA 95

Query: 71  LRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQV 128
           LR   P  A + VL G+ P      F   + P+++S+ Q+  +  L+          +Q+
Sbjct: 96  LRKILPTDAMVVVLNGVMPEAMVFCFAQQITPLLNSIDQVMAWLTLLETRQQRRAVMIQL 155

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G +RLG+  Q+ +        +       IISHLA AD P   +N VQ  R +   + 
Sbjct: 156 DSGMSRLGVMSQQLMRLAAIFRERNWPAPDYIISHLANADRPDHALNMVQHARLQQAKAV 215

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
           +     SLA+S G+ L   +   L RPGI+L+G T +   S  ++ V T    I+ ++  
Sbjct: 216 FPSSRFSLANSCGMFLHLGWREDLCRPGIALFGVT-QPWFSRLLKPVFTLTLTILRVQDV 274

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            AG  V YG     TR   IA  + GYADG P  +                   +G  +P
Sbjct: 275 PAGTPVGYGSTVTATRPLRIATISAGYADGVPRNMRPPAG-----------VCWRGVRLP 323

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
           +LG++ MD  M D +       GD ++  G    L++VA A  T  Y+++ R+G R+ + 
Sbjct: 324 VLGRVCMDSFMVDASAVSP-TAGDVVEFIGTGQTLEEVAAACDTIPYEIMTRLGARFQRI 382


>gi|317124143|ref|YP_004098255.1| alanine racemase [Intrasporangium calvum DSM 43043]
 gi|315588231|gb|ADU47528.1| alanine racemase [Intrasporangium calvum DSM 43043]
          Length = 387

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 160/378 (42%), Gaps = 25/378 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +  +IDL A ++N  ++ A + +++  AVVK + YG G   +A A   AG     V    
Sbjct: 12  VWAEIDLDAFEDNVRTLRARAPHSQLMAVVKADGYGHGLLPVARAAVRAGADWLGVAQPT 71

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYA 125
           E   LR      RI     +           ++    S+   L   +    S G S    
Sbjct: 72  EAFALRDAGVTTRILTWLSVPGTDFAGAVRRDIDVSASAPWTLDAIAGAARSEGRSARVH 131

Query: 126 LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L+VDTG  R G         ++      ++    +  I +H A AD P       Q + F
Sbjct: 132 LKVDTGLGRGGAFGTDWPTLVEHARRLESEGAISVVGIWTHFAMADAPEHPTVLAQQDTF 191

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTV 235
              ++  +  G+      LA+S+  L+ P  H  L RPGI++YG +   ++     ++ V
Sbjct: 192 FEAVATAERAGVRPEVRHLANSAATLVHPAAHADLVRPGIAMYGLSPVPEVADDFGLRPV 251

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  AR+ L+++  AG  +SYG       D+++ +   GYADG P + + +         
Sbjct: 252 MTLRARLALVKRWPAGRGISYGHVYAPEVDTVVGLVPAGYADGVPRSATNV--------- 302

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---PDIKLDDVALASGT 352
                 +      I G++ MD  + D+    +   GD + +FG         D A A+ T
Sbjct: 303 --APVQVGARRTTIAGRVCMDQFVVDLGPDSAAAAGDVVTLFGKPSEGPTAQDWADATET 360

Query: 353 TNYDLLVRIGTRYAKFYT 370
            +Y+++ RIG R  + ++
Sbjct: 361 ISYEIVTRIGARVPRLWS 378


>gi|194334745|ref|YP_002016605.1| alanine racemase [Prosthecochloris aestuarii DSM 271]
 gi|194312563|gb|ACF46958.1| alanine racemase [Prosthecochloris aestuarii DSM 271]
          Length = 386

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 99/372 (26%), Positives = 149/372 (40%), Gaps = 25/372 (6%)

Query: 11  IDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I    L  N   +  L G   +   VVK NAYG     IA  L   GV DF V +++E +
Sbjct: 26  ISSAHLACNVKKIRDLIGKERKIMGVVKANAYGHDAPYIAGCLEKLGVSDFGVANIDEAL 85

Query: 70  KLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYA 125
           +LR        +RI                 N+   ++         +   +        
Sbjct: 86  QLRQTKAICDNSRILAFCSPLDSHIPFYLRHNVTMTVTDFRTMHAAAAAAKAANRLLNVH 145

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++VDTG  RLGL  ++A++   +       QL  + +H A +          Q + FR L
Sbjct: 146 VKVDTGMGRLGLPPEKAMELLSSIEENDHLQLEGVYTHFAQSTISDD-FTRRQTDCFRHL 204

Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTA 238
            S ++      +    A S  I+   N H  + RPGI LYG       +     + V+  
Sbjct: 205 CSEFEHRFRRSVIKHAAGSGAIICQKNAHLDMVRPGIMLYGYPPDSTTTIGPELKPVMQF 264

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A+II I++   G  +SY           IA  + GYADGY   LS   S          
Sbjct: 265 QAKIIFIKEVAPGTSISYNRTWIAPEKRTIATISAGYADGYHRRLSNRSS---------- 314

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDL 357
              I G   P  G +TMD TM D+ ++    VGD   +FG D     D+A  +GT +Y+L
Sbjct: 315 -VTINGRSYPQAGTVTMDQTMVDLGNASRAAVGDTAVLFGWDGPSAADLADMAGTISYEL 373

Query: 358 LVRIGTRYAKFY 369
           L  +  R  + +
Sbjct: 374 LCAVSARVTRVF 385


>gi|270157427|ref|ZP_06186084.1| alanine racemase [Legionella longbeachae D-4968]
 gi|269989452|gb|EEZ95706.1| alanine racemase [Legionella longbeachae D-4968]
          Length = 353

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 100/361 (27%), Positives = 171/361 (47%), Gaps = 21/361 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+ +AL +N   +   +   +  A+VK NAYG G   +AP L    V  F V  +EE + 
Sbjct: 3   IEPSALLHNLEQIKRFAPGKKIIAMVKANAYGCGVHIVAPVL-EGHVDAFGVACIEEALI 61

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           L     +    +  G+  P + KI+       VI    QL +              ++V+
Sbjct: 62  LHKIGSRTPCILFQGVFSPDEFKIVAQHQFGCVIHQPHQLQWLLN-TPLNTPIKLWVKVN 120

Query: 130 TGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-IS 187
           TG +RLG   QE  +          + +   +++HLACAD+P    N  Q+  F  + I+
Sbjct: 121 TGMHRLGFKPQELHEVMSALQTCTWVDKDIGLMTHLACADEPERIENYQQISLFENISIT 180

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIIL 244
            +   + S+A+S+ I+  P  H  + RPGI LYG +   N++     +  V+   + I  
Sbjct: 181 GFS--QRSIANSAAIISFPQTHADVVRPGIMLYGVSPFANQTSIELGLLPVMRFVSAISA 238

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +        V Y G  K  + S+I + A GY DGYP  ++                +++G
Sbjct: 239 VHHNPPFAPVGYSGIWKSEKHSVIGIVAAGYGDGYPRHIA-----------ENTPVWVQG 287

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             VPI+G+++MDM   D+T+   ++ G  ++++G +I ++ VA A+GT+ Y+LL +I  R
Sbjct: 288 KEVPIVGRVSMDMLAVDLTEHQEVKPGAPVELWGKNILVERVAKAAGTSGYELLCQISER 347

Query: 365 Y 365
            
Sbjct: 348 V 348


>gi|126665189|ref|ZP_01736172.1| alanine racemase [Marinobacter sp. ELB17]
 gi|126630559|gb|EBA01174.1| alanine racemase [Marinobacter sp. ELB17]
          Length = 359

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 171/366 (46%), Gaps = 21/366 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  AL++N+      SG +   AV+K + YG            A V  F V  +EE + 
Sbjct: 9   IDSKALQHNYQVACQRSGQSSAMAVIKADGYGH-GIAGVAGALAAVVPKFAVACIEEAIA 67

Query: 71  LRLYTP-QARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           +R     Q  + +L G+H  Q+     + N  PV+    QL +  +  +        L+V
Sbjct: 68  IRNAGVGQQPVALLQGVHSEQDLATCIEHNFEPVLHCDDQLQWLVQAPAA---PRIWLKV 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +TG NRLG   +E         + +L  ++   ++H ACADD  S +   Q ERF    +
Sbjct: 125 NTGMNRLGFHAEELAQVMATLAHHQLTPKVIGFVTHFACADDKRSTMTQQQTERFEKATA 184

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIIL 244
            +  ++ S+A+S+ +       F  +RPGI LYG +  +  S     +++V+T +A +I 
Sbjct: 185 PWPELQLSVANSAALFRPGQKLFGWSRPGIMLYGASPIVGTSAAELGLKSVMTLQAPLIS 244

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R    G+ V YG      + + + + A+GY DGYP                G    I G
Sbjct: 245 TRLLQPGDTVGYGADWVACKPTRMGIVALGYGDGYPRHAG-----------TGTPAAIHG 293

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             + ++G+++MDM   D++ + +   GD ++++G  + +DDVA  +GT  Y+LL  +  R
Sbjct: 294 QRIQLIGRVSMDMLAVDLSAAPAARNGDPVELWGATVPVDDVAGHAGTIGYELLTGVTAR 353

Query: 365 YAKFYT 370
             + + 
Sbjct: 354 VPRRWC 359


>gi|224542708|ref|ZP_03683247.1| hypothetical protein CATMIT_01893 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524418|gb|EEF93523.1| hypothetical protein CATMIT_01893 [Catenibacterium mitsuokai DSM
           15897]
          Length = 328

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 153/340 (45%), Gaps = 16/340 (4%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90
             A++K NAYG G +++A  L +  + Q F V +++E V LR    +  I VL  +    
Sbjct: 1   MVAIIKANAYGHGYKEVASVLKDEPIIQMFAVATLKEAVDLRNLGVKQDILVLGAVPLED 60

Query: 91  EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150
             I  + N+   + S   L   +++          L +D+G NR+G   ++  +      
Sbjct: 61  LNIAIEKNISLALFSFDYLNKINEMHHYDAPVKVHLSIDSGMNRIGFKTEKEFEQAMEMI 120

Query: 151 NKKLGQLSLIISHLACADD-PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
           +     +  I +H A ADD         QL  F++++ + +       +S+ ++   +  
Sbjct: 121 DPAKIDVEGIFTHFATADDFSQDDEYEKQLALFKSIVGNNRFKYVHCDNSAAMMFHHSDF 180

Query: 210 FQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
             LTR GI++YG   +  ++  ++  ++   ++ +++    GE + YG       D  +A
Sbjct: 181 GNLTRIGIAMYGVDPRGEENKDLKQAMSLYTKVAMVKVVPKGEKIGYGMTYTADEDQYVA 240

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE 329
              IGYADG+     G             + +I G+  P++G++ MD  M  + +  +++
Sbjct: 241 TLPIGYADGFTRANQGR------------EVYINGHYYPVVGRVCMDQCMVKVDE--NVK 286

Query: 330 VGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            GD ++IFG  I L  +A    T  Y+++  I  R  + Y
Sbjct: 287 PGDDVEIFGEHISLAKMAKEINTIPYEIICLISPRVERIY 326


>gi|329766869|ref|ZP_08258397.1| alanine racemase [Gemella haemolysans M341]
 gi|328837594|gb|EGF87219.1| alanine racemase [Gemella haemolysans M341]
          Length = 375

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 169/382 (44%), Gaps = 27/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M ++   +L+++L AL NN++ +N+L+      AVVK ++YGLG + IA  LY  GV+ F
Sbjct: 1   MINDRPTQLRVNLDALLNNYNKLNSLNNEKIGLAVVKADSYGLGSKVIAEHLYQNGVRHF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-YSKLMSCG 119
              ++EE ++L+     + + VL  I+    K   + N+     S   L      L    
Sbjct: 61  ATATLEEALELKDVIKDSMVLVLGVINSQNVKYAVENNVSLTCPSKEWLEESLVHLQQIE 120

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 +++DTG  R+G S  E L    N  + +      I SH + AD    + ++ Q 
Sbjct: 121 GKLKIHVKLDTGMGRIGTSDLEELKEIDNLLDSEKIDFEGIFSHYSNADGEDDNYDNYQT 180

Query: 180 ERFRTLISHY--KGIEASLASSSGILLGPNY--HFQLTRPGISLYGGTDKIN----KSHP 231
           E F   +  +  K     + +S+G +   N    + LTR GI++YG     N        
Sbjct: 181 ENFERSLKIFTHKPKYIHIENSAGTVKYSNRDDQYNLTRIGIAMYGCYPSGNIEKLDKVQ 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V +  +++  ++K  AG+ + YG   +  +D  IA   IGYADG      G      
Sbjct: 241 LEPVASLVSKVTHVKKFQAGQKLGYGVSYEAKQDEYIATVPIGYADGLLRRAQGFKIR-- 298

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                     +      I+G++ MD  M   +   +++VGD +  FG      + +D+ A
Sbjct: 299 ----------VGSEECEIVGRVCMDQLMVRCSK--NVKVGDDVLFFGEYSGQKVSVDEFA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++   I  R  + Y
Sbjct: 347 EYQNTISYEIFCCINKRVPRVY 368


>gi|329902874|ref|ZP_08273284.1| Alanine racemase, catabolic [Oxalobacteraceae bacterium IMCC9480]
 gi|327548584|gb|EGF33244.1| Alanine racemase, catabolic [Oxalobacteraceae bacterium IMCC9480]
          Length = 361

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 153/372 (41%), Gaps = 24/372 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   ID++AL++N          A T AVVK NAYG G E+   A          +  
Sbjct: 3   RPLVAIIDISALQHNLAEARRRMPAAITWAVVKANAYGHGLERGMRAF--GAADGLALVE 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            E  V LR    +  I +L G       ++    +L   I    Q+ +  +         
Sbjct: 61  PEAAVALRELGWRKPILLLEGCFDLIDFRLAAQHHLELTIHCPQQIGWLEQTRFDA-PVN 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLER 181
             L++++G NRLG   Q+                  +++H A AD   +     + Q+ R
Sbjct: 120 VHLKMNSGMNRLGFMPQDFAAAYQRLRVNPQVGKIALMTHFANADAADTPGMTLAEQVRR 179

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVV 236
           F+   +        +++S+  LL  +      RPGI LYGGT          +  +++ +
Sbjct: 180 FQLGSAGLDAPWN-ISNSAATLLHADMRSHEVRPGIMLYGGTPGTHTSTPAGAFGLRSAM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T ++ +I +++   G+ V YG +        I V A GYADGYP                
Sbjct: 239 TLQSELIAVQQIHPGDAVGYGSRFIAETPMTIGVVACGYADGYPRHA-----------PS 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G    + G    ++G ++MDM   D+T   +   G  + ++G  + +D+VA A+GT  Y+
Sbjct: 288 GTPVLVDGVRTRLVGNVSMDMLTVDLTPIPTAHHGSCVTLWGDGLPIDEVAQAAGTIGYE 347

Query: 357 LLVRIGTRYAKF 368
           L+  I  R  + 
Sbjct: 348 LMCAIAPRV-RV 358


>gi|116618901|ref|YP_819272.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097748|gb|ABJ62899.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 373

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 104/378 (27%), Positives = 170/378 (44%), Gaps = 27/378 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               L IDL A++ N   +   +G  R  AVVK NAYG G +++  AL+  GV DF V +
Sbjct: 10  RPTWLDIDLKAIQTNAKLIMRHAGAQRLIAVVKANAYGHGAKQVVGALFEVGVYDFAVAT 69

Query: 65  VEEGVKLRLYTPQAR--IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           + EGV LR Y PQA   IF+L      Q +++ +  L P + +   L      +  G   
Sbjct: 70  IGEGVDLRKYYPQAEINIFLLGVQDVTQTEVMVENRLSPAVGTTEWLDEAVNYIKDGQKL 129

Query: 123 PYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L VDTG  R+G     A+ D  H     +  QL+ + +H A ADD + +    Q++R
Sbjct: 130 DVQLAVDTGMGRMGAHSASAVEDMYHLIQGTEKFQLAGVFTHFATADDNNQNYYDEQVQR 189

Query: 182 FRTLI--SHYKGIEASLASS-SGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235
           F   +  +        LA+S S I      +    R G  LYG      +     P++  
Sbjct: 190 FYQWVQSAGIPKQYWHLANSGSAIWHHDEIYTDTIRVGSVLYGYNPGAPEKKMPLPLKPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  ++++  + +   GE VSYG      +   IA   IGYADGY   +SG+         
Sbjct: 250 LQLKSKLGSVHQLTTGESVSYGATYTAEKPQWIATLPIGYADGYLRRMSGM--------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
              K  + G++  ++G++TMD  +  +     +  G  + + G      I ++++A  + 
Sbjct: 301 ---KVLVDGHIEHVIGRVTMDQIVITLKQKYPV--GKTVTLVGLEGENQISVEEIAEYAQ 355

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  +++L   G R  + Y
Sbjct: 356 TIPHEILTNFGARLPRIY 373


>gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145]
 gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145]
          Length = 818

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 153/370 (41%), Gaps = 21/370 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L A+++N +     L    +   +VK   YG G  +IA  L    V    V   +E
Sbjct: 458 LEINLNAMEHNLNYYRSKLKPGVKLMTMVKAFGYGSGSFEIANLLQFNHVDYLSVAYADE 517

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS-HPYA 125
           GV LR       I V+        + I    L P I S   L  +S  L + G+S +P  
Sbjct: 518 GVTLRQNGITLPIMVMSP-EISSLEAIVKHQLEPEIFSQSTLEAFSNYLQNAGISNYPIH 576

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRT 184
           L++DTG +RLG    E          K   ++  + SHL  ++ P        Q+   + 
Sbjct: 577 LKLDTGMHRLGFMPDELDFIADFIKTKNTVKIQSVFSHLVASESPIHDDFTRQQISIIKD 636

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             +  +          + ++S I   P   F + R GI LYG  +       ++ V   +
Sbjct: 637 FTNKLEQRIGYTFIKHICNTSAITRWPEAQFDMVRLGIGLYGVDNFSEDDENLEQVAVLK 696

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +  I++   GE + YG +  +  D  IA   IGYADG+   L              G 
Sbjct: 697 TTVSQIKQIKRGETIGYGRRGVMPEDGQIATVKIGYADGFLRALGNGV----------GS 746

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            FI G  V  +G I MDM M +IT   +++ GD + +F    +L  +A    T  Y++L 
Sbjct: 747 MFINGEEVFTIGNICMDMCMLNITGK-NVKEGDEVIVFNSQKRLYKLAEKLNTIPYEILT 805

Query: 360 RIGTRYAKFY 369
            +  R  + Y
Sbjct: 806 SVSQRVKRVY 815


>gi|163741439|ref|ZP_02148830.1| alanine racemase [Phaeobacter gallaeciensis 2.10]
 gi|161385173|gb|EDQ09551.1| alanine racemase [Phaeobacter gallaeciensis 2.10]
          Length = 345

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 132/365 (36%), Positives = 189/365 (51%), Gaps = 25/365 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RL ++L AL  NW +++AL+ N  TAAVVK N YGL   ++  AL NAG ++FFV   E
Sbjct: 4   ARLTLNLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGKALANAGARNFFVAMAE 62

Query: 67  EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EGV LR    P   I V  G   G  K++ D  L P+++S+ Q+    +       HP+ 
Sbjct: 63  EGVALRRAIGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQML---RHFESLPGHPFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+DTG NRLG+   E       + ++      L++SHLACAD+ +  +NS QL+ F  L
Sbjct: 120 VQLDTGMNRLGMEAAEWAAVRDIALSQG---PVLLMSHLACADETTHPMNSHQLQNFLDL 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 +  SLA++ G+LLG NYHF L RPGI LYGG    +       V   +  +I I
Sbjct: 177 TEGL-DLPRSLAATGGLLLGRNYHFDLCRPGIGLYGGQPYGDA----LPVAQLDLPVIQI 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG      R S IA  A GYADG    L               + +  G 
Sbjct: 232 RSLDPGETVGYGNSWAAQRPSRIATVAAGYADGLHRALGSGQI----------QVYAGGT 281

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++G+++MD+   D+TD        ++ I      +D +A A+GT  Y++L  +G+RY
Sbjct: 282 PCPVVGRVSMDLITVDVTDLGDDP--SHLAILNERQTVDTLADAAGTIGYEILTSLGSRY 339

Query: 366 AKFYT 370
           A+ YT
Sbjct: 340 ARSYT 344


>gi|315082997|gb|EFT54973.1| alanine racemase [Propionibacterium acnes HL027PA2]
          Length = 375

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 148/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V +V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I       P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGIPLPILKPPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|254488701|ref|ZP_05101906.1| alanine racemase [Roseobacter sp. GAI101]
 gi|214045570|gb|EEB86208.1| alanine racemase [Roseobacter sp. GAI101]
          Length = 376

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 136/362 (37%), Positives = 191/362 (52%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NWH +N +S   +T AVVK +AYGLG +++AP L   G + FFV + +EG
Sbjct: 38  LTIDLHAIAANWHMLNRMSQG-QTGAVVKADAYGLGIDRVAPVLAQEGARQFFVATTKEG 96

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR    P   I +  G  PG  + I    L P+I+SV Q       +     HP+ LQ
Sbjct: 97  VALRRVLGPGPAINLFAGHMPGDAEKIRSAQLTPMINSVDQ---LIGHVETLPGHPFGLQ 153

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NRLG+   E       + ++      LIISHLACAD+P   +N+ QL+ FR + +
Sbjct: 154 LNTGMNRLGMDASEWGALRDIALSQ---HPRLIISHLACADEPGHKMNAAQLKSFRDMTA 210

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             K I  SL ++ GILLG +YHF LTRPGI LYGG   ++     Q VVT +  +I +R+
Sbjct: 211 GLK-IPLSLGATGGILLGADYHFSLTRPGIGLYGGLPFVDA----QPVVTLDLPVIQVRE 265

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AG  V Y       R S IA  + GYADG    +             G      G  V
Sbjct: 266 VPAGGSVGYACGWIAPRPSRIATVSGGYADGLIRAMGN-----------GATMTHNGTKV 314

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+++MD+   DIT       G ++Q+ G    +D VA  +GT  Y++L  +G RY +
Sbjct: 315 PVVGRVSMDLITVDITTLTD-TPG-HLQLLGQHQSVDTVAGFAGTIGYEILTSLGPRYDR 372

Query: 368 FY 369
            Y
Sbjct: 373 VY 374


>gi|269928988|ref|YP_003321309.1| alanine racemase [Sphaerobacter thermophilus DSM 20745]
 gi|269788345|gb|ACZ40487.1| alanine racemase [Sphaerobacter thermophilus DSM 20745]
          Length = 408

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 145/377 (38%), Gaps = 29/377 (7%)

Query: 11  IDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           IDL A   N   +   L   A   AV+K NAYG G      A   AG     V  +EE +
Sbjct: 20  IDLDAFAGNIAYVRSQLPEGAEVIAVIKANAYGHGLVPCGRAALAAGASRLAVARIEEAL 79

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYALQV 128
            LR     A I VL   +P   +   ++ +   + S          L       P  L+V
Sbjct: 80  LLRAAGVVAPILVLSPANPALARQAAESGIALAVGSATGLNRLLDALGDDLPPLPVHLKV 139

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF-----R 183
           DTG +R G+  +  ++       +   ++  + +H A AD     V   Q  RF      
Sbjct: 140 DTGMHRFGVEPEGVVELARALAREPRVRVEGVFTHFATADAADDRVLQEQTRRFAAAVQA 199

Query: 184 TLISHYKGIEASLASSSGILLG----PNYHFQ-LTRPGISLYGGTD--KINKSHPMQTVV 236
              +  +     +A+S+ IL G    P        R G+ LYG     ++    P++ V+
Sbjct: 200 LAAAGLQPPLVHMANSAAILRGVVEIPAPRATIAVRAGLILYGLNPSRELPLPAPIRPVL 259

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
               R+  +     GE +SYG      R    A   IGYADG    LS            
Sbjct: 260 RLVTRVGQVFTVPPGEGISYGWSYIAERPIRCANLPIGYADGLVRLLSNQ---------- 309

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
            G   + G + PI G+I MD T+ ++  +  +  GD   +        +  D  A  +GT
Sbjct: 310 -GWAVVGGAVCPIRGRICMDQTVIEVEAAPDVAEGDEAVLLSDGRDGAMTADQAAALAGT 368

Query: 353 TNYDLLVRIGTRYAKFY 369
            NY+++  +  R  + Y
Sbjct: 369 INYEIVSALAARIPRVY 385


>gi|241889490|ref|ZP_04776789.1| alanine racemase [Gemella haemolysans ATCC 10379]
 gi|241863797|gb|EER68180.1| alanine racemase [Gemella haemolysans ATCC 10379]
          Length = 371

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 171/382 (44%), Gaps = 27/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M ++    L++DL A+ NN++ + AL+      A+VK ++YGLG   IA  LY  GV+ F
Sbjct: 1   MINDRPTELRVDLNAILNNYNKLTALNNKKTGIAIVKADSYGLGARAIANHLYKNGVRHF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCG 119
              ++EE ++L+     + + VL   +P   K   + N+     S V       ++ +  
Sbjct: 61  ATATLEEALELKDVIFDSMVLVLGVTNPQNVKYAVENNVSLTCPSKVWLEKCLEEMETIK 120

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 ++++TG  R+G S +E L       + +      I SH + AD   ++ +  Q 
Sbjct: 121 GKLKIHVKIETGMGRIGTSDKEELVKIDKLLSSEKIDFEGIFSHYSNADGSDNNYDDYQT 180

Query: 180 ERFRTLISHY--KGIEASLASSSGILLGP--NYHFQLTRPGISLYGGTDKIN----KSHP 231
           + F   +  +  K     + +S+  +        + +TR GISLYG     N        
Sbjct: 181 KNFDERLKLFTHKPKYIHIGNSASTVKYSDRQDQYNMTRLGISLYGCYPSENIEKLDKIK 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ VV+  ++I  ++K L GE + YG   +  +D  IA   IGYADG      G   +  
Sbjct: 241 LEPVVSLVSKITHVKKFLKGEKLGYGVSYEAKQDEYIATVPIGYADGILRRAQGFKIK-- 298

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     +      I+G++ MD  M   ++  +I+VGD + IFG +    I +DD A
Sbjct: 299 ----------VGTEDCEIVGRVCMDQLMVRCSE--NIKVGDDVLIFGENNGQKISVDDFA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y++   I  R  + Y
Sbjct: 347 TFQDTISYEIFCCINKRVPRVY 368


>gi|41410356|ref|NP_963192.1| alanine racemase [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41399190|gb|AAS06808.1| Alr [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 391

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 166/379 (43%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+++N   +   +  A+  AVVK + YG G  + A A   AG  +  V +V
Sbjct: 16  LAEALVDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATV 75

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR     A +           +      +   +SS  Q     + +   G +   
Sbjct: 76  DEALALRAAGISAPVLAWLHPPGIDFRPALLAGVQIGLSSQRQLDELLTAVRDTGRTATV 135

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            ++VDT  NR G+   +    L     +  ++      ++SH+  AD P++ VN VQ +R
Sbjct: 136 TVKVDTRLNRNGVPPAQYPSMLTALRRAVAEEAIVPRGLMSHMVYADQPANPVNDVQAQR 195

Query: 182 FRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTV 235
           F  +++  +  G+    A L++SS  +  P+  F + RPGI++YG +         +   
Sbjct: 196 FTDMLAQAREQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYGLSPVPELGDMGLVPA 255

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + L++   AGE VSYG      RD+ +A+  +GYADG   +L G          
Sbjct: 256 MTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRL-------- 307

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DIKLDDVALAS 350
              +  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A   
Sbjct: 308 ---QVSINGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADLL 364

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+++     R  + Y
Sbjct: 365 GTIHYEVVTSPRGRITRTY 383


>gi|326692184|ref|ZP_08229189.1| alanine racemase [Leuconostoc argentinum KCTC 3773]
          Length = 375

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 167/386 (43%), Gaps = 32/386 (8%)

Query: 2   HSNEFL-----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           +SNE L      L +DL A++ N   + A +G  R  AVVK +AYG G   +  ALY  G
Sbjct: 3   NSNELLMMRPSWLTVDLAAIQYNAKQIMAHAGAIRLIAVVKADAYGHGAVAVTTALYEIG 62

Query: 57  VQDFFVTSVEEGVKLRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
           V+DF V ++ EGV LR   P     I +L         ++    L P + ++  L    +
Sbjct: 63  VRDFAVATIAEGVALRQQVPYDDFNIILLGVQDVQYVPVMVSQRLTPAVGTLAWLDEAEQ 122

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           L++        L VDTG  R+G   + AL +      +    QLS + +H A ADD +  
Sbjct: 123 LLNSDDQLMIQLAVDTGMGRMGAHSEAALQEMYDKVLDTPSLQLSGVFTHFATADDTNQA 182

Query: 174 VNSVQLERFRTLISH--YKGIEASLASS-SGILLGPNYHFQLTRPGISLYGGT---DKIN 227
               Q+  F   ++          LA+S S +           R G  LYG      ++ 
Sbjct: 183 YYDQQVANFNAWVTAVGIPKQYWHLANSGSALWHHDQIETGTIRVGSVLYGYNPGAPELP 242

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V++ ++RI  + +  AGE VSYG     T    +A   IGYADGY   + G+ 
Sbjct: 243 MPVALKNVLSLKSRIGAVHQLQAGESVSYGATYTATEPQWVATLPIGYADGYLRRMGGMT 302

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                         + G+   ++G++TMD  +  +     +  G  + + G D    I +
Sbjct: 303 ------------VLVNGHEEKVIGRVTMDQIVITLDRDYPV--GTVVTLIGQDGDAEITV 348

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           +D A  + T  +++L   G R  + Y
Sbjct: 349 EDFAQYAQTIPHEILTTFGPRLPRIY 374


>gi|227431178|ref|ZP_03913233.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353073|gb|EEJ43244.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 373

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 170/378 (44%), Gaps = 27/378 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               L IDL A++ N   +   +G  R  AVVK NAYG G +++  AL+  GV DF V +
Sbjct: 10  RPTWLDIDLKAIQTNAKLIMRHAGAQRLIAVVKANAYGHGAKQVVGALFEVGVYDFAVAT 69

Query: 65  VEEGVKLRLYTPQAR--IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           + EGV LR Y PQA   IF+L      Q +++ +  L P + +   L      +  G   
Sbjct: 70  IGEGVDLRKYYPQAEINIFLLGVQDVTQTEVMVENRLSPAVGTTEWLDEAVNYIKDGQKL 129

Query: 123 PYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L VDTG  R+G     A+ D  H     +  QL+ + +H A ADD + +    Q++R
Sbjct: 130 DIQLAVDTGMGRMGAHSASAVEDMYHLIQGTEKFQLAGVFTHFATADDNNQNYYDEQVQR 189

Query: 182 FRTLI--SHYKGIEASLASS-SGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235
           F   +  +        LA+S S I      +    R G  LYG      +     P++  
Sbjct: 190 FYQWVQSAGIPKQYLHLANSGSAIWHHDEIYTDTIRVGSVLYGYNPGAPEKKMPLPLKPA 249

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  ++++  + +   GE VSYG      +   IA   IGYADGY   +SG+         
Sbjct: 250 LQLKSKLGSVHQLTTGESVSYGATYTAEKPQWIATLPIGYADGYLRRMSGM--------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
              K  + G++  ++G++TMD  +  +     +  G  + + G      I +++VA  + 
Sbjct: 301 ---KVLVDGHIEHVIGRVTMDQIVITLKQKYPV--GKTVTLVGLEGENQISVEEVAEYAQ 355

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  +++L   G R  + Y
Sbjct: 356 TIPHEILTNFGARLPRIY 373


>gi|221194906|ref|ZP_03567962.1| alanine racemase [Atopobium rimae ATCC 49626]
 gi|221184809|gb|EEE17200.1| alanine racemase [Atopobium rimae ATCC 49626]
          Length = 383

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 103/389 (26%), Positives = 163/389 (41%), Gaps = 33/389 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +N +   +I+L AL+ N  +    L+   +  A+VK +AYG G    A AL + G   F 
Sbjct: 5   NNRWAWAEINLGALRRNAKAFKAQLARGVKFMAIVKADAYGHGAAACAKALRSVGADQFG 64

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGV 120
           V +V+EG+ LR    +  I VL          +   +L+P +  +   L F     + G 
Sbjct: 65  VATVDEGIALRQSGIEDPILVLNQPPLESIDDLVTFDLMPSVYEIDFALGFGEASSAAGK 124

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              Y L +D+G  R+G+  +EAL+        +  + +   +H A AD       ++Q+ 
Sbjct: 125 VGKYHLAIDSGMTRIGVRREEALELRRAIDFHRGLECAGTFTHFATADLLDDWDFALQVN 184

Query: 181 RFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQ 233
           RF   +S  H  G+E       ++ G +L P+  F + R GI LYG     N      ++
Sbjct: 185 RFTEAVSVIHEAGLETGLVHADNTPGTILHPDVQFDMCRIGIGLYGLHPAENTIPRIALE 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSP 292
            V++   R+        G+ V YG   ++ R    +A   IGYADG    LS        
Sbjct: 245 PVMSVRGRVTRAIYPNVGDGVGYGLTWRVPRKNIQVATVPIGYADGLARCLSNRMD---- 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDIT--------DSLSIEVGDYIQIFGPD---- 340
                    + G     +G I MD  MF +             +  GD + I G D    
Sbjct: 301 -------VLVDGMRARQVGNICMDQFMFAVDINRARSYRPGYEVIEGDMVTIMGADGDEY 353

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I  D++A   GT NY+++   G R  K Y
Sbjct: 354 ISADEIAKLRGTINYEVVCDFGMRLDKVY 382


>gi|99081620|ref|YP_613774.1| alanine racemase [Ruegeria sp. TM1040]
 gi|123077575|sp|Q1GFQ4|ALR_SILST RecName: Full=Alanine racemase
 gi|99037900|gb|ABF64512.1| alanine racemase [Ruegeria sp. TM1040]
          Length = 345

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 189/365 (51%), Gaps = 25/365 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RLKI+L AL  NW +++A + N  TAAVVK N YGL   ++  AL  AG ++FFV   E
Sbjct: 4   ARLKINLDALAINWRNLDAKT-NCETAAVVKANGYGLESGRVGKALAQAGARNFFVAIAE 62

Query: 67  EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG+ LR    P   I V  G   G  K++ D  L P+++S+ Q+    +       HP+ 
Sbjct: 63  EGIALRRALGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQML---RHFESLPGHPFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D+G NRLG+   E +     + ++      L++SHLAC+D+P   +N+ QL+ F  +
Sbjct: 120 VQLDSGMNRLGMEAAEWMAVRDIALDQN---PVLLMSHLACSDEPGHGMNAYQLKNFIEM 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 I  SLA++ G+LLG +YHF L RPGI LYGG    +       VV  E  +I +
Sbjct: 177 TEGL-NIPRSLAATGGLLLGRDYHFDLCRPGIGLYGGAPYADA----LPVVELEVPVIQV 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG      RDS IA  A GYADG                  G   +  G 
Sbjct: 232 RDLAPGESVGYGNTWIAQRDSKIATIAGGYADGLHRAFQ----------RQGIMAYAGGT 281

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++G+I+MD+   D+TD   +    Y+ +      +D +A A+ T  Y++L  +G RY
Sbjct: 282 PCPVVGRISMDLITVDVTDLAEVPP--YLSLMNETQTVDVLANAADTIGYEVLTSLGNRY 339

Query: 366 AKFYT 370
           A+ Y+
Sbjct: 340 ARTYS 344


>gi|262277398|ref|ZP_06055191.1| alanine racemase [alpha proteobacterium HIMB114]
 gi|262224501|gb|EEY74960.1| alanine racemase [alpha proteobacterium HIMB114]
          Length = 359

 Score =  335 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 119/363 (32%), Positives = 189/363 (52%), Gaps = 15/363 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCE-KIAPALYNAGVQDFFVTSVEE 67
           L I+L A+K N+ ++      +     VK ++YGLG   KI   L NAG + FFV ++ E
Sbjct: 8   LDINLNAVKQNYLTIKKFCSKSEICGTVKASSYGLGGHNKIVTTLKNAGCKRFFVANINE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ +R       I +L G++ G+EKI++  NL PVI+++ QL  +             + 
Sbjct: 68  GIFIRKKFKSIIINILNGLNRGEEKILYKHNLNPVINTISQLKKWLIFTKNKRKDKLVIH 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  RLG+   +  +           +  +I+SHLACA D  ++ N  Q ++F  +  
Sbjct: 128 FDTGMCRLGIQEDQITEVLKLKDQINKFKEVIIMSHLACAGDKKNNYNEKQRKKFEKIRR 187

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G + SLA+S GI LG  YH+ L RPGI+LYGG+  +N    ++ VV+ +A II I  
Sbjct: 188 TFPGYKYSLAASGGIFLGKKYHYDLVRPGINLYGGSKSLNSK--IKHVVSLKAPIIQINN 245

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE   Y    K  RDS+ A   +GYADG  + LS             G    K   +
Sbjct: 246 LKKGETAGYSRTFKAKRDSITATIPMGYADGIGIRLSN-----------KGYVHFKNKKI 294

Query: 308 PILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           P++G+++MD+ + DIT   + I+VGD+++++     +D+ A  +GT  Y ++  I  RY 
Sbjct: 295 PMIGRVSMDLIILDITKFKNKIKVGDFVEVYNDKFTIDNFANLTGTIPYRIITCISKRYL 354

Query: 367 KFY 369
           + Y
Sbjct: 355 RNY 357


>gi|256831867|ref|YP_003160594.1| alanine racemase [Jonesia denitrificans DSM 20603]
 gi|256685398|gb|ACV08291.1| alanine racemase [Jonesia denitrificans DSM 20603]
          Length = 410

 Score =  335 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 103/383 (26%), Positives = 155/383 (40%), Gaps = 28/383 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           R  IDL A+  N  ++    G+    A   AVVK NAYG G    A A  + G     V 
Sbjct: 15  RAIIDLAAISQNVSTLATRLGDNGSHAAIMAVVKANAYGHGLVPAARAALHGGATWLGVA 74

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
              E + LR      RI           + +   ++   +++        S   + G   
Sbjct: 75  HAHEALALRQAGITDRILTWLHAPGVPYRDLIAADIDVSVAAPWAAQEVISAAQAAGRPA 134

Query: 123 PYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L+VDTG  R G++  +    L    ++ +     L  + SHLA AD+P       Q 
Sbjct: 135 RVHLKVDTGLGRNGVTPADLPFLLATLIDAQHAGHLTLVGVWSHLAFADEPHHPSVREQA 194

Query: 180 ERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSH 230
             F   I+     G       +A+S+  L  P   + L RPG+++YG +           
Sbjct: 195 RVFDDAITIVQAAGAHLEVRHIANSAATLTAPELAYDLVRPGLAIYGLSPIPQVASAAEL 254

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +T +A I   ++  AG  VSY       RD+ IAV  +GYADG P   SG + E 
Sbjct: 255 GLRPAMTVQADIATAKRLPAGHGVSYAHHYVTARDTHIAVIPLGYADGIPRHASGHNGE- 313

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                LG    I G    I G++ MD  + D+ D  S+  G    +FG            
Sbjct: 314 -----LGAPVSINGVTYAIAGRVCMDQIVIDVHDD-SVRAGHTATLFGDPTLGVPSAQQW 367

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
           A A+GT +Y++  RI  R  + Y
Sbjct: 368 ADATGTISYEITTRIADRLPRMY 390


>gi|270262189|ref|ZP_06190461.1| alanine racemase [Serratia odorifera 4Rx13]
 gi|270044065|gb|EFA17157.1| alanine racemase [Serratia odorifera 4Rx13]
          Length = 357

 Score =  335 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 153/367 (41%), Gaps = 22/367 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   + L+A +NN   +   + +A+  +VVK NAYG G + +  +L       F +  
Sbjct: 3   RPITATLHLSAFENNLQVIRRFAPSAKIWSVVKANAYGHGIKHVWRSL--GQTDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + LR    Q  I +L G   P    ++    L   + S  QL   +          
Sbjct: 61  LAEAILLRESGWQGPILLLEGFFKPQDLLLLDRYRLTTSVHSDWQLAAIA-AAKLSAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+V++G NRLG S          +          ++SH A AD P     + Q+    
Sbjct: 120 VYLKVNSGMNRLGFSPDRLHSVWLQAREMGNIASLTLMSHFATADGPQG--VAEQMTVIE 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
              +    +   LA+S+  L  P  H    RPGI LYG +            +Q  +T  
Sbjct: 178 GAAAGIP-LPRCLANSAATLWHPQTHGSWVRPGIVLYGASPSGQWRDIADSGLQATMTLS 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + II ++   +G+ V YG +        I V A GYADGYP                G  
Sbjct: 237 SEIIGVQALKSGDRVGYGWRYSAKAAQRIGVVACGYADGYPRHA-----------PSGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            ++ G +   +G ++MDM   D+T     ++G  ++++G  + +DDVA A+GT  Y+LL 
Sbjct: 286 VWVDGVLTHTVGTVSMDMLAVDLTHCPGADIGAEVELWGRRLPVDDVAAAAGTLGYELLT 345

Query: 360 RIGTRYA 366
            +  R  
Sbjct: 346 ALAARVP 352


>gi|330718524|ref|ZP_08313124.1| alanine racemase [Leuconostoc fallax KCTC 3537]
          Length = 375

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 170/379 (44%), Gaps = 29/379 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               L++DL A++NN  ++   +G  +  AVVK NAYG G   +  +LY  G++DF V +
Sbjct: 12  RPTWLQVDLAAIQNNAKAIMKHAGAQKMIAVVKANAYGHGAVAVTNSLYAIGIRDFAVAT 71

Query: 65  VEEGVKLRLYTPQA---RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           ++EG++LR          I +L      Q  +I   +L P I  +  L   ++LM+    
Sbjct: 72  IDEGIELRQN-ITQQDINILLLGVQDVAQVPVILQYHLTPAIGDIQWLMKATQLMAMDDV 130

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L VDTG  R+G   +  +    +         LS + +H A ADD +      Q++
Sbjct: 131 LNVHLAVDTGMGRMGARNEHDVQMVKDFIDQSSHFALSGVFTHFATADDHNDAYYQQQVQ 190

Query: 181 RFRTLISHYKGIE--ASLASS-SGILLGPNYHFQLTRPGISLYG---GTDKINKSHPMQT 234
           +F+   +H +  E    LA++ S +      +    R G +LYG   GT  +     +Q 
Sbjct: 191 KFQLWTTHAQIPEELCHLANTGSALWHHNEINTHTIRVGSALYGFNPGTPHLEMPLQLQP 250

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  + +I    +   GE +SYG      +  L+A   IGYADGY   L G+        
Sbjct: 251 AMALKTKIGATHQMAVGESISYGATYTAQQPQLVATLPIGYADGYLRRLQGM-------- 302

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
               K  + G+   ++G+ITMD  +  +     +  G  + + G      I ++D+A  +
Sbjct: 303 ----KVLVDGHFEKVVGRITMDQILITLKQPYPV--GTIVTLMGYDGEQQISVEDIANYA 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  +++L  + +R  + Y
Sbjct: 357 KTIPHEVLTILTSRLPRIY 375


>gi|256818882|ref|YP_003140161.1| alanine racemase [Capnocytophaga ochracea DSM 7271]
 gi|256580465|gb|ACU91600.1| alanine racemase [Capnocytophaga ochracea DSM 7271]
          Length = 369

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 95/379 (25%), Positives = 149/379 (39%), Gaps = 23/379 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M + E + L+I+LTAL+ N   +   L        VVK ++YG     IA  L   G   
Sbjct: 1   MKTEETV-LEINLTALEKNVLYLKSRLKPTTLFLGVVKASSYGNNSVPIALHLQKKGLAN 59

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            F V    EG  LR       I VL+   P     I    L P + S      + +    
Sbjct: 60  YFAVAYTSEGKALREAGITLPILVLHP-QPINFDDIVKYKLEPTLYSQRITKLFLEYAEK 118

Query: 119 G--VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVN 175
              V +P  L+ +TG NRLG  L E  +      N     +    SHLA ++D       
Sbjct: 119 HHLVKYPVHLKCNTGLNRLGFDLNEIDEVLALLKNNTTVTVKTAYSHLAASEDMNEKEFT 178

Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q++ F              +     ++SGIL   +  F + R GI +YG  +      
Sbjct: 179 ENQIKTFIAFQEKINKTFSHKVIYHQCNTSGILNYAHAQFDMVRCGIGMYGFANDAQLQQ 238

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +  ++T ++ I  I     G+ + Y         +  A   +G+ADG            
Sbjct: 239 YLTPIMTLKSVISQIHTLQVGDSLGYNRGYIADHITKTATIPVGHADGINRIYG------ 292

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                  G  FI G   PI+G + MDM + D+T+    E G  + +F  D   + +A ++
Sbjct: 293 ----KGKGFVFINGKKAPIIGNVCMDMILVDVTNIP-CEEGGEVIVFDKDHTAETLAESA 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+L+  +  R  + Y
Sbjct: 348 GTISYELITSMAHRIKRVY 366


>gi|67458471|ref|YP_246095.1| alanine racemase [Rickettsia felis URRWXCal2]
 gi|75537059|sp|Q4UNC8|ALR_RICFE RecName: Full=Alanine racemase
 gi|67004004|gb|AAY60930.1| Alanine racemase [Rickettsia felis URRWXCal2]
          Length = 462

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 125/467 (26%), Positives = 190/467 (40%), Gaps = 117/467 (25%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF-------- 60
           L+I+L+A+KNN+  +  +   +   A VK N YGLG  +I+ AL     + F        
Sbjct: 6   LEINLSAIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65

Query: 61  -----FVTSVEEGV---------KLRLYTP------------------------------ 76
                 + S  E V          +R   P                              
Sbjct: 66  VNLRKALASWHESVFRHCEKNYTVIRRSNPVKNSVSQNFFNYFSGLQQCFAPRNDGSSIH 125

Query: 77  ---------QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126
                       I VL G+       + + NL PV++++ Q+  + K  +      P  L
Sbjct: 126 ATTPKALDNDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 185

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +TG NRLGL+  E     +N    K   L  IISHLA +++  +  N  QL RF+T +
Sbjct: 186 HFNTGINRLGLTHNEIEQLINNRDLLKGLDLQYIISHLAVSEEIDNPYNLEQLNRFKTYL 245

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---------------- 230
            ++  ++ASLA+S GI LG +YHF L RPG +LYG    I+ S+                
Sbjct: 246 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPVIDLSNNLSYKEEFEGDTERRT 305

Query: 231 --------------------------PMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
                                      +Q  VT +A II ++       + Y       R
Sbjct: 306 AAYINVREDSSTGSTYKLPLEGGYSRGLQNPVTLKAPIIHLQNLTLDSHIGYNMTFTTER 365

Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324
           DS+IA   +GYADG+    S             G+ FI G  VPI+G+I+MD+   D+TD
Sbjct: 366 DSVIATLPLGYADGFSRNFSNQ-----------GEVFINGRSVPIVGRISMDLINIDVTD 414

Query: 325 SLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              +++  G   +I G     D +A   GT  Y++L  +G+RY + Y
Sbjct: 415 LPPLDIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSRYKRIY 461


>gi|257066468|ref|YP_003152724.1| alanine racemase [Anaerococcus prevotii DSM 20548]
 gi|256798348|gb|ACV29003.1| alanine racemase [Anaerococcus prevotii DSM 20548]
          Length = 373

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 148/370 (40%), Gaps = 28/370 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++D+  ++ N  ++  +S N    AVVK NAYGLG   IA       V  F V +  E 
Sbjct: 6   IEVDIDKIQRNIENIKKISKNKNICAVVKANAYGLGATVIAKY-IENQVSYFAVANFLEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             LR+      I +L  +   +     D ++   I  +      +K  S        + +
Sbjct: 65  KNLRIAGITKPIMILGFVSVEEANECVDYDIEIPIYDLSYAERINK--SIVGDLKVHIAL 122

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG +RLG    E  D        +  ++    SH + AD+        Q E+F  +   
Sbjct: 123 DTGHSRLGFREFE-FDRIIKLKQLERLKIKGAFSHFSTADEEDKTFTQEQYEKFERIRKK 181

Query: 189 YK---GIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240
                 IE   +A+S+  +        + R GI++YG          K   ++     ++
Sbjct: 182 LDDQFNIEIFHIANSAASIYHDLIS-DMDRIGIAMYGIYPSDYLRERKDIRLEQAFLLKS 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  +++   G+ VSYG   K      IA   IGYADGY    S +           G+ 
Sbjct: 241 RVSFVKEINEGDSVSYGRAFKAKSRMKIATIPIGYADGYFRAFSNI-----------GEV 289

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I G +  + G++ MD  M D++D    ++ D + ++     + + A    T  Y+L+  
Sbjct: 290 LINGKISKVCGRVCMDQIMVDVSDI-DCKIEDEVILY---PDIYEEANKIVTIPYELMTS 345

Query: 361 IGTRYAKFYT 370
              R  + Y 
Sbjct: 346 FDMRLTRVYV 355


>gi|283457594|ref|YP_003362178.1| alanine racemase [Rothia mucilaginosa DY-18]
 gi|283133593|dbj|BAI64358.1| alanine racemase [Rothia mucilaginosa DY-18]
          Length = 437

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 161/392 (41%), Gaps = 30/392 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL AL++N   +  L G+    AV+K +AYG G   +A +   AG     V  V E 
Sbjct: 25  ATIDLDALEHNVRRLKELIGDRVLIAVIKADAYGHGAYPVARSAIAAGADLLGVVHVNEA 84

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR     A +           +      +   +S        +     G      L+ 
Sbjct: 85  LELRADGIDAPLMAWLHTPSTDFEAALQEKIRLGVSGWDLEAVAAAAECTGERAIVHLKA 144

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G +  +       + + +   L  +  I SHLA AD+P+    + Q++   T 
Sbjct: 145 DTGLGRNGATAADWPALVARAASLEDAGLITVEGIFSHLAVADEPTRAETAQQVDTLDTF 204

Query: 186 ISHYK--GIEA---SLASSSGILLGP--------NYHFQLTRPGISLYGGTDKIN---KS 229
           ++  +  G++     LA+S   L                  R G++LYG +       + 
Sbjct: 205 VAQAREAGLDPKIVHLANSPATLTASLEGWDTEERLLGDGVRCGLALYGLSPLPEVTAED 264

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++ V+T  + I  +++  AG+ VSYG +    + + +A+  +GYADG P         
Sbjct: 265 LGLKPVMTVGSYIAAVKEVPAGQGVSYGLRYHTPKATTLALVPLGYADGVPRIAENAPVR 324

Query: 290 HSPSVFLGGKGFI----KGYMVPILGKITMDMTMFD-----ITDSLSIEVGDYIQIF--G 338
             P       G +    +G    ++G+I MD  + D     ++D     +G    +F  G
Sbjct: 325 IYPGAQNAENGSVPNNAEGKTYRVVGRIAMDQMVVDLGEPGLSDPALGYLGAPAILFGAG 384

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            +  +++ A A+ T NY+++ RI +R  + Y 
Sbjct: 385 ENPPVEEWADAAQTINYEIVTRISSRVERLYV 416


>gi|326315128|ref|YP_004232800.1| alanine racemase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371964|gb|ADX44233.1| alanine racemase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 369

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 151/380 (39%), Gaps = 35/380 (9%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +R  I   AL+ N     A + +AR  AVVK NAYG G E+    L   G   F +  
Sbjct: 3   RPIRATIHTAALQQNLARARAATPDARVWAVVKANAYGHGIERAFEGLR--GADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R    +  I +L G+  P   ++    +L  V+    Q+ + S   +    H 
Sbjct: 61  LGEAERVRQLGWRGPILLLEGVFEPRDLELCSRLSLWHVVHCDEQIDWLSAHKTHA-PHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG                        ++H + AD P     + Q+E F 
Sbjct: 120 VFLKMNSGMNRLGFPPARYRAAWARLNALPQVDEISFMTHFSDADGPRGI--AHQIEAFC 177

Query: 184 TLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLYGG----TDKINKSHPMQTV 235
           T      G E ++++S+  L              R GI LYG      +       +   
Sbjct: 178 TATQDLPG-ERTVSNSAATLRHAGGDARVRGDWVRAGIVLYGSAADHPEHTAAHWGLAPT 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  ARII  ++  AG+ V YG      R   I V A GYADGYP               
Sbjct: 237 MTLSARIIGTQQLQAGDTVGYGSSFTADRPLAIGVVACGYADGYPRHA-----------P 285

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITD----SLSIEVGDYIQIFGPD-----IKLDDV 346
            G    + G     +G+++MDM   D++      +   VG    ++G       + +DDV
Sbjct: 286 TGTPVLVNGVRTRTVGRVSMDMITVDLSPLHEAGVEAGVGSEATLWGRASCGAVLCIDDV 345

Query: 347 ALASGTTNYDLLVRIGTRYA 366
           A  +GT  Y+L+  +  R  
Sbjct: 346 AQPAGTVGYELMCALAPRVP 365


>gi|294339132|emb|CAZ87486.1| Alanine racemase, catabolic [Thiomonas sp. 3As]
          Length = 367

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 96/381 (25%), Positives = 156/381 (40%), Gaps = 34/381 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL +N   +   +  ++  AVVK NAYG G  +   AL       F +  
Sbjct: 3   RPISAVIHTAALSHNLLRVRQATPASKVWAVVKANAYGHGIARAYGALRT--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  KLR       I +L G   P    +    NL  V+    Q+ +   +     +H 
Sbjct: 61  LTEAEKLRALGWVGPILLLEGCFAPEDLALCERLNLWHVVHCREQIDWL-AVHRGNRTHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++TG NR+G S +                    ++H ACAD+         L RF 
Sbjct: 120 VFLKMNTGMNRVGFSPEAYAAAWERLNALPQVGEITHMTHFACADEAGGI--DEALARFA 177

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDK----INKSHPMQTVV 236
             + H  G E +L++S+  L+    P       RPGI+LYG +            ++  +
Sbjct: 178 RGVGHLPG-ERTLSNSAAALVHGADPRVASDWVRPGIALYGSSPTGLALDAAHWKLRPAM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + +I I+   AGE V YG +    R   I V A GYADGYP                
Sbjct: 237 SLRSELIDIQHIAAGECVGYGARFTAPRPMRIGVVACGYADGYPRVAPN----------- 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIE----VGDYIQIFGPD----IKLDDVAL 348
           G    + G    ++G+++MDM   D+    +      +G  + ++G D    + +D+VA 
Sbjct: 286 GTPIVVDGVRTQLVGRVSMDMITVDLEPVFAAGNQPMIGSPVLLWGQDAQAELSIDEVAA 345

Query: 349 ASGTTNYDLLVRIGTRYA-KF 368
           A+GT  Y+L+  +  R   + 
Sbjct: 346 AAGTLGYELMCALAARVPVRV 366


>gi|85703131|ref|ZP_01034235.1| alanine racemase [Roseovarius sp. 217]
 gi|85672059|gb|EAQ26916.1| alanine racemase [Roseovarius sp. 217]
          Length = 345

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 127/362 (35%), Positives = 180/362 (49%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW +++A++    TAAVVK +AYGLG  K+A +L  AG + FFV   EEG
Sbjct: 6   LTIDLDAITANWRALDAMTAG-ETAAVVKADAYGLGAAKVARSLARAGARHFFVAVAEEG 64

Query: 69  VKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR        I+V  G  PG   +I D +L P+I+S+ Q+    + +     HP+ +Q
Sbjct: 65  AALRDTLGSGPAIYVFSGHMPGDADMIGDMHLTPMINSLEQM---IRHVESLPGHPFGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G NRLG+   E       +  +      LI+SHLACAD+    +N  QL  FR +  
Sbjct: 122 LDSGMNRLGMEPGEWAALRDIALAQ---DPRLIMSHLACADESDHAMNPQQLATFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GILL   YHF L RPGI LYGG          + VVT +  +I  R 
Sbjct: 179 GL-DVPRSLANTGGILLDAAYHFDLARPGIGLYGGRPFAEA----RAVVTLDIPVIQCRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y       R++ IA  A GYADG    +                 + +    
Sbjct: 234 LAPGETVGYANGFTAPRETRIATVAAGYADGILRAMG-----------PKTSLWAEDIPC 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI G+I+MD+   DITD         +Q+ GP   +D +A  + T  Y++L  +G RY +
Sbjct: 283 PIAGRISMDLICVDITDLGHDPK--SLQLLGPYQSIDTLADHADTIGYEILTSLGARYTR 340

Query: 368 FY 369
            Y
Sbjct: 341 RY 342


>gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301]
          Length = 789

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 99/372 (26%), Positives = 161/372 (43%), Gaps = 24/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL A+ +N +   +      R  A+VK  +YG G  ++A  L + GV    V   +E
Sbjct: 428 LEVDLDAMIHNLNYFRSKLDFRTRLVAMVKAGSYGAGDFEVAQMLQHQGVDYLAVAFADE 487

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR       + VL       +++I    L P I S   L  ++  +S      +P  
Sbjct: 488 GVLLRERGITMPVVVLNADADSFDQMIA-NRLEPEIYSFRSLADFADAVSHAGETRYPVH 546

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRT 184
           +++DTG +RLG    E              +++ + SHL CAD P        Q+ R+  
Sbjct: 547 IKLDTGMHRLGFMEGEIGRLCEVLPTLPAVKVASVFSHLNCADMPGEDAYTREQIARYDR 606

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           + +         +    A+S+ I   P   F + R G+ LYG     N    ++ V   +
Sbjct: 607 MSAAVAASLPYSVIRHTANSAAIERFPEARFDMCRLGLGLYGFGWVHNA--GLRPVSALK 664

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
            RI+ I++  AG+ V YG   KL R ++ A   IGYADG    L                
Sbjct: 665 TRIVQIKRLEAGDAVGYGRAGKLLRPTVTATVPIGYADGLDRHLGCGRWS---------- 714

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--KLDDVALASGTTNYDL 357
             + G   PI+G++ MD  M DITD   +  GD + +F  +    L+ +A    T  Y++
Sbjct: 715 MRVAGRPAPIVGRVCMDSCMIDITDIPGVGEGDEVTVFSAEPGNDLETMARVLDTIPYEI 774

Query: 358 LVRIGTRYAKFY 369
           +  + +R  + Y
Sbjct: 775 MTSVSSRVKRIY 786


>gi|227494580|ref|ZP_03924896.1| alanine racemase [Actinomyces coleocanis DSM 15436]
 gi|226832314|gb|EEH64697.1| alanine racemase [Actinomyces coleocanis DSM 15436]
          Length = 397

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 95/404 (23%), Positives = 164/404 (40%), Gaps = 41/404 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  +   R  ID+ A+ +N   + A + N +   VVK +AYG G   +A AL  AG +  
Sbjct: 1   MVYSYPARALIDIAAITHNAKLLLAKAPNTQHLGVVKADAYGHGHASVAVALARAGYRAI 60

Query: 61  FVTSVEEGVKLRLYTPQA---RIFVLYGIHPGQ----EKIIFDTNLIPVISSVPQLTFYS 113
            V  +EE + +R     A    + +   + P           +  +    S+  Q+   +
Sbjct: 61  GVAQIEEALAVRDALDIAGFYDVMLFSWVIPADGTLVASEAIERGIEVAASTPVQVAMLN 120

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                       L++DTG +R G +L E      ++      ++  + SHLACAD+ +  
Sbjct: 121 DCAMLRNPARLHLKIDTGMSRAGATLDEFAQLIEDALAAPNIKIVGVWSHLACADELTED 180

Query: 174 ---VNSVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225
                + Q + F            +     L ++S  L  P   + + R GI +YG T  
Sbjct: 181 GMAATNAQKDVFDRACQMLSDYGVRDFTRHLGATSVTLWHPQLQYDMVRDGIGIYGLTPN 240

Query: 226 IN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                 +   +  V+   A ++ +++   G  VSYGG      D  + +  +GY DG P 
Sbjct: 241 PETASSEELGLMPVMNLSANLMQVKRIKQGAKVSYGGTWVAETDRWLGLVPLGYGDGVPR 300

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE---------VGD 332
             S        SV+ GG+        P++G++ MD  M D+  ++  +          GD
Sbjct: 301 HASN---HAEVSVYAGGRVM----RCPVVGRVCMDQFMIDLGPAVDAQGVDLPAPAVAGD 353

Query: 333 YIQIFGPD------IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
              +FG          +DD A A  T NY+++ R+G+R  + Y 
Sbjct: 354 TAVLFGNPERFPGCPSVDDWAQACDTINYEIVTRLGSRVPREYV 397


>gi|332530410|ref|ZP_08406354.1| alanine racemase [Hylemonella gracilis ATCC 19624]
 gi|332040122|gb|EGI76504.1| alanine racemase [Hylemonella gracilis ATCC 19624]
          Length = 377

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 158/387 (40%), Gaps = 42/387 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL++N     A + +A+  AVVK NAYG G E++   L   G   F +  
Sbjct: 3   RPIQALIHTGALRHNLARARAAAPDAKVWAVVKANAYGHGIERVYEGLR--GADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R    +  I +L G+  P   ++     L  V+    Q+ + +   +    H 
Sbjct: 61  LGEAERVRALGWRGPILLLEGVFDPRDLELCSRLGLWHVVHETRQIDWLAMHKTHA-PHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG   +               +   +I+H + AD P    +  QL  F 
Sbjct: 120 VFLKMNSGMNRLGFRPEAFRAAWARLDALPQVEEITLITHFSDADGPRGIAS--QLALFN 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHF-----------QLTRPGISLYGGTDKINK---- 228
                  G E SLA+S+  L                     RPGI++YG      +    
Sbjct: 178 ATTQDLPG-ERSLANSAATLRHMGAQGRTSSDAEGLRSDWVRPGIAVYGSAPDYPEHDAA 236

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +   +T  +RII +++  AG+ V YG      +   + V A GYADGY         
Sbjct: 237 HWDLHPTMTLRSRIIGVQQLQAGDTVGYGSAFTAQQPMRVGVVACGYADGYMR------- 289

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS----IEVGDYIQIFGPD---- 340
                   G    + G    ++G+++MDM   D+          +VG  + ++G      
Sbjct: 290 ----VAPTGTPVLVDGVRTRLVGRVSMDMLTVDLEPVRQAGLAADVGSEVTLWGQAGNGA 345

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYA 366
            + +D+VA A+GT +Y+L+  +  R  
Sbjct: 346 VLDIDEVARAAGTLSYELMCALALRVP 372


>gi|153820397|ref|ZP_01973064.1| alanine racemase [Vibrio cholerae NCTC 8457]
 gi|126509060|gb|EAZ71654.1| alanine racemase [Vibrio cholerae NCTC 8457]
          Length = 307

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 96/316 (30%), Positives = 144/316 (45%), Gaps = 20/316 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+  +     I+L AL++N   +   +  ++  AVVK N YG G   IA      G   F
Sbjct: 1   MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    +     
Sbjct: 59  GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQAQ-LE 117

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                 L+VD+G +RLG+  ++  DF       + + +    +SH  CAD+        Q
Sbjct: 118 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 177

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTV 235
            E F +L    +G E SLA+S+G+L  P    +  RPGI +YG +  + KS      Q V
Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ +I +R+  AGE V YGG     RD+ I V AIGY DGYP T             
Sbjct: 237 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 286

Query: 296 LGGKGFIKGYMVPILG 311
            G    + G    +LG
Sbjct: 287 -GTPVVVNGRRCRLLG 301


>gi|303257818|ref|ZP_07343828.1| alanine racemase [Burkholderiales bacterium 1_1_47]
 gi|330998760|ref|ZP_08322488.1| alanine racemase [Parasutterella excrementihominis YIT 11859]
 gi|302859421|gb|EFL82502.1| alanine racemase [Burkholderiales bacterium 1_1_47]
 gi|329576257|gb|EGG57773.1| alanine racemase [Parasutterella excrementihominis YIT 11859]
          Length = 360

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 167/372 (44%), Gaps = 25/372 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +R  ID  AL+ N   + A SGN     VVK NAYG G   + P   +  V    +  
Sbjct: 3   RPIRALIDTYALEKNLSLLRAKSGNRFLWGVVKANAYGHGLIGLLPTF-DNWVDGLALLD 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
            +EGV +R       + ++ GI    +  + D      VI +  Q+ +  K      +  
Sbjct: 62  PKEGVDIRKAGWAKAVLLIEGIFAASDIEMADEYGFETVIHNERQIEWLEKA-ELKNTLR 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLE 180
             L+ +TG NRLG   +          N    ++  +++H A A    +    V    ++
Sbjct: 121 VHLKCNTGMNRLGFRPEAIPQVLFRLNNIPKVEVVDLLAHFANAEVTYEQDKPVT---VQ 177

Query: 181 RFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVV 236
                +   +G+    L+++ GIL       +  R GI++YG +   N   +S  +  V+
Sbjct: 178 NQLAALIQLRGLLPMCLSNTGGILWH-EAGDEAVRAGIAMYGVSPDGNVSSQSLGIDPVM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E+ II  +    GE   YG +    R + +AV A GYADGYP      D+ H      
Sbjct: 237 TLESEIIAFQDLQPGEACGYGSKFIAHRPTKLAVVACGYADGYPRK----DNPHR----- 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
             +  ++G  VP++G ++MDM   D+TD  ++ +G  ++I+G ++ +++VA   GT  Y+
Sbjct: 288 --EVVVEGKRVPVIGNVSMDMLTIDVTDLPNVRLGSKVEIWGKNLPVNEVAKGFGTIGYE 345

Query: 357 LLVRIGTRYAKF 368
           LL  +  R  + 
Sbjct: 346 LLCDVNQRVPRV 357


>gi|32491125|ref|NP_871379.1| hypothetical protein WGLp376 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31339945|sp|Q8D2H8|ALR_WIGBR RecName: Full=Alanine racemase
 gi|25166332|dbj|BAC24522.1| dadX [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 357

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/362 (25%), Positives = 166/362 (45%), Gaps = 21/362 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I   AL +N  ++   +  ++  +V+K NAYG   +     L       F V  + E 
Sbjct: 7   IRISSNALASNLRTIKNYANKSKVWSVIKSNAYGHTIKAALKGLKE--TSGFAVLELNEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR       I +L G     + + I    +  VI +  QL +  +           L+
Sbjct: 65  VLLRENGWNGPILLLEGFFEESDLLEICQYKITTVIHNDWQLNYIKQY-DIKSPIDVYLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +++G NRLG + ++ +   ++  N K      ++SH +     S+   + Q+   R +  
Sbjct: 124 LNSGMNRLGFNEKDFIRTWYDLSNLKKISSLTLMSHFSLGF--STKTVNKQMNIIRKIFK 181

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEARII 243
                   LA+S+ I+     H    RPGI LYG   K NK       ++ V+T E+RII
Sbjct: 182 IL-NPTLCLANSTAIIFHTYTHKDWIRPGIILYGILPKENKKISKKFNLKPVMTLESRII 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            I+   + E + YG      + +LI + + GYADGYP +            F G   F+ 
Sbjct: 241 SIQNIKSKEYIGYGKNYYSNKSNLIGIVSCGYADGYPFS----------VPFSGTPVFVN 290

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    I+G + MDM   D+ D  + ++G  ++++G +I +++++  + TT+Y+L+ RI +
Sbjct: 291 GTRTQIIGSVCMDMLTIDLNDCPNAKIGSKVELWGNNISINEISKLANTTSYELMCRISS 350

Query: 364 RY 365
           R 
Sbjct: 351 RV 352


>gi|319949830|ref|ZP_08023848.1| alanine racemase [Dietzia cinnamea P4]
 gi|319436508|gb|EFV91610.1| alanine racemase [Dietzia cinnamea P4]
          Length = 409

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 97/378 (25%), Positives = 161/378 (42%), Gaps = 26/378 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R +IDL A+++N   +   +  AR  AVVK +AYG G   ++ A    G     VT++ E
Sbjct: 11  RAEIDLDAIEHNSRVLVRSARGARVMAVVKADAYGHGAVPVSLAALRGGAHALGVTTIAE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPYAL 126
            ++LR     A I           +   + ++   I S     T        G       
Sbjct: 71  ALQLRSAGIDAEILAWLYSVSDDVRAAVEADVDLAIPSPAHLDTVLEAARRTGRRARVTP 130

Query: 127 QVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++DTG  R G+SL+E               L +++ +++H A ADDP + V  +Q+ R  
Sbjct: 131 KIDTGLARSGISLEEWPAVLERLVTATAGGLVEVTGLMAHFAHADDPGNPVIDLQVARLH 190

Query: 184 TLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
             +   +G          A+S+  L  P   F++ RPGI+LYG          +   +T 
Sbjct: 191 ECVGQARGRGLDCPVNHHANSAATLTRPEDGFEMVRPGIALYGLNPVEGLEVDLVPAMTF 250

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A ++++++  AG+ VSYG       D+ +A+ A GYADG    LSG             
Sbjct: 251 SAEVLMVKRLAAGQGVSYGHTWHAPHDTTVALIAAGYADGVWRLLSGRLD---------- 300

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGP----DIKLDDVALASGT 352
              I G   P +G++ MD  + D+       + VGD   +FG          + A   GT
Sbjct: 301 -VSIGGRRYPNVGRVCMDQFVVDLGPDPGQAVRVGDTAVLFGTGADGGPTAAEWAETLGT 359

Query: 353 TNYDLLVRIGTRYAKFYT 370
            +Y+++  +  R A+ + 
Sbjct: 360 IHYEVVTAVRGRAARHHV 377


>gi|314983018|gb|EFT27110.1| alanine racemase [Propionibacterium acnes HL110PA3]
          Length = 352

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 141/361 (39%), Gaps = 24/361 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIF 81
           M   +G+ +    VK +AYG G  +++  +          V +V EG +L        I 
Sbjct: 1   MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGITLPIP 60

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQ 140
            L    P        + +   +     L   SK     GV+    + VD+G  R+GL  +
Sbjct: 61  KLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHIAVDSGMGRIGLCPE 120

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTLIS-----HYKGIEA 194
              + T  +   K  ++  + +HL  +D P        +++ F T +S            
Sbjct: 121 RLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVSLVETHRGPFPLV 180

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAEARIILIRKALAGEL 253
            LA+S  IL        + R GI  YG     +     +   ++  + +  ++    G+ 
Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWISHVTFVKTVSVGDT 240

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           + YG     +  + IA   +GYADG    LS             G   I+G + PI+G+I
Sbjct: 241 IGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGYVLIRGSVHPIVGRI 289

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            MD  M D+    ++ VGD + + G      +  DD+A   GT +Y++   I  R  + +
Sbjct: 290 CMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISYEITCAISKRVNRCW 349

Query: 370 T 370
            
Sbjct: 350 V 350


>gi|315224260|ref|ZP_07866097.1| alanine racemase [Capnocytophaga ochracea F0287]
 gi|314945763|gb|EFS97775.1| alanine racemase [Capnocytophaga ochracea F0287]
          Length = 369

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 95/379 (25%), Positives = 148/379 (39%), Gaps = 23/379 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M + E + L+I+LTAL+ N   +   L        VVK ++YG     IA  L   G   
Sbjct: 1   MKTEETV-LEINLTALEKNVLYLKSRLKPTTLFLGVVKASSYGNNSVPIALHLQKKGLAN 59

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            F V    EG  LR       I VL+   P     I    L P + S      + +    
Sbjct: 60  YFAVAYTSEGKALREAGITLPILVLHP-QPINFDDIVKYKLEPTLYSQRITKLFLEYAEK 118

Query: 119 G--VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVN 175
              V +P  L+ +TG NRLG  L E         N     +    SHLA ++D       
Sbjct: 119 HHLVKYPVHLKCNTGLNRLGFDLNEIDQELTLLKNNTTVTVKTAYSHLAASEDMNEKEFT 178

Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q++ F              +     ++SGIL   +  F + R GI +YG  +      
Sbjct: 179 ENQIKTFIAFQEKINKTFSHKVIYHQCNTSGILNYAHAQFDMVRCGIGMYGFANDAQLQQ 238

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +  ++T ++ I  I     G+ + Y         +  A   +G+ADG            
Sbjct: 239 YLTPIMTLKSVISQIHTLQVGDSLGYNRGYIADHITKTATIPVGHADGINRIYG------ 292

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                  G  FI G   PI+G + MDM + D+T+    E G  + +F  D   + +A ++
Sbjct: 293 ----KGKGFVFINGKKAPIIGNVCMDMILVDVTNIP-CEEGGEVIVFDKDHTAETLAESA 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+L+  +  R  + Y
Sbjct: 348 GTISYELITSMAHRIKRVY 366


>gi|88810604|ref|ZP_01125861.1| Alanine racemase region [Nitrococcus mobilis Nb-231]
 gi|88792234|gb|EAR23344.1| Alanine racemase region [Nitrococcus mobilis Nb-231]
          Length = 365

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 109/369 (29%), Positives = 169/369 (45%), Gaps = 18/369 (4%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  +DL AL++N       + +AR  AV+K N YG G  ++A AL  A      V+ 
Sbjct: 3   RLARATVDLGALRHNLAVARQAAPSARVIAVLKANGYGHGLLQVAAALAQADAFA--VSC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  +LRL   + RI +L G     E  +FD   L PVI +  QL    +  +      
Sbjct: 61  MAEASRLRLAGYRHRIILLAGYFEPDELPLFDRYALDPVIHAEWQLAPLER-STLQRPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+VDTG +RLG    +  +      +         ++HLA AD+       +QLE F 
Sbjct: 120 VWLKVDTGMHRLGFPAGQVCEVYQRLRSMPSVASVRFMTHLARADNRRDPTTRMQLETFE 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVTAEAR 241
                  G E S+A+S+  L     H Q  RPGI LYG +  I+  +S  +  V T EAR
Sbjct: 180 AACQGLSG-ERSIANSAATLAWRQTHAQWVRPGIMLYGCSPFIDGLESPALWPVQTLEAR 238

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ +     G+L+ YGG         + V ++GY DGYP                G    
Sbjct: 239 LVAVNYHRRGDLIGYGGIYACPEAMPVGVVSVGYGDGYPRHA-----------PSGTPLL 287

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  V ++G+++MDM   D+  + + +VGD + ++G  + +  VA   GT  Y+LL ++
Sbjct: 288 VAGREVSLVGRVSMDMLSVDLRSAPNAQVGDLVVLWGESLPVGRVAEQCGTIAYELLCKL 347

Query: 362 GTRYAKFYT 370
            +R    Y 
Sbjct: 348 TSRVQFRYV 356


>gi|313839518|gb|EFS77232.1| alanine racemase [Propionibacterium acnes HL086PA1]
 gi|315079051|gb|EFT51058.1| alanine racemase [Propionibacterium acnes HL053PA2]
 gi|327334461|gb|EGE76172.1| alanine racemase [Propionibacterium acnes HL097PA1]
          Length = 352

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 139/361 (38%), Gaps = 24/361 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIF 81
           M   +G+ +    VK +AYG G  +++  +          V +V EG +L        I 
Sbjct: 1   MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGITLPIL 60

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQ 140
            L    P        + +   +     L   SK     G++    + VD+G  R+GL  +
Sbjct: 61  KLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHIAVDSGMGRIGLRPE 120

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLI-----SHYKGIEA 194
                T  +   +  ++  + +HL  +D P        +++ F T +             
Sbjct: 121 HLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEEFTRHEIDAFMTAVTQTQTDRGPFPLV 180

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAEARIILIRKALAGEL 253
            LA+S  IL        + R GI  YG     + +   +   ++  + +  ++    G+ 
Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWISHVTFVKTINPGDA 240

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           + YG     +  + IA   +GYADG    LS             G   I G + PI+G+I
Sbjct: 241 IGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGHVLIGGSVHPIVGRI 289

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            MD  M D+    S+ VGD + + G      +  DD+A   GT +Y++   I  R  + +
Sbjct: 290 CMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISYEITCAISKRVDRRW 349

Query: 370 T 370
            
Sbjct: 350 V 350


>gi|311107365|ref|YP_003980218.1| alanine racemase [Achromobacter xylosoxidans A8]
 gi|310762054|gb|ADP17503.1| alanine racemase [Achromobacter xylosoxidans A8]
          Length = 375

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 155/385 (40%), Gaps = 40/385 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55
             +   + ++AL +N  ++                   AV+K NAYG G E+        
Sbjct: 3   RPISATVSVSALAHNLAAVRRHLDQTAEAASGLPPSIWAVIKANAYGHGIEQAVAGFSK- 61

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
             Q   +  ++E V+ R       I +L G   P    ++   +L   + +  QL   ++
Sbjct: 62  -AQGLAMLDLDEAVRCREAGWGGPILLLEGFFEPSDLDLVDRYHLSTTVHNREQLDMLAR 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPS 171
                      L++++G NRLG S        +       + +      ++H ACAD P 
Sbjct: 121 AR-FSRRVDIMLKLNSGMNRLGFSPAAYAAAHERAMLLQQQGVLGSVGKMTHFACADGPQ 179

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLG------PNYHFQLTRPGISLYGGTDK 225
               + QL  F ++     G   S+ +S+  L                RPGI LYG +  
Sbjct: 180 G--VNEQLALFNSVTHKMPGA-ISVCNSAATLRFAEIAVASETQAHWVRPGICLYGASPF 236

Query: 226 INK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            +    S  ++  ++  + II ++   AG+ V YG   +  R   I + A GYADGYP  
Sbjct: 237 ADAEASSFGLKPAMSLRSEIIAVQDLKAGDSVGYGAIFRADRSMRIGIVACGYADGYPRH 296

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-I 341
            +            G    + G    ++G+++MDM + D+    +  VG  + ++G +  
Sbjct: 297 AT-----------TGTPVVVAGIRTQLVGRVSMDMLIVDLGPVPAAGVGSPVSLWGEEGP 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYA 366
            +D+VA A+GT  Y+LL  +  R  
Sbjct: 346 SVDEVAQAAGTIGYELLCALAPRVP 370


>gi|169334855|ref|ZP_02862048.1| hypothetical protein ANASTE_01261 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257593|gb|EDS71559.1| hypothetical protein ANASTE_01261 [Anaerofustis stercorihominis DSM
           17244]
          Length = 374

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 91/362 (25%), Positives = 154/362 (42%), Gaps = 30/362 (8%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83
             L         +K NAYG G  + A AL    +  F V  + EG++LR    +  I +L
Sbjct: 25  RVLPKGCELMPAIKANAYGHGLVETAEALNKMEIYHFCVAEISEGIRLRKAGVKGEILIL 84

Query: 84  YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEAL 143
              H     ++   +L   +       + S L  C ++    +++DTG +RLG   +   
Sbjct: 85  GYTHLSNINLVKKYDLTQTVID---YRYASSLDECKLNIKVHIKIDTGMHRLGEHFENIT 141

Query: 144 DFTHNSFNKKLGQLSLIISHLACADDPSS---HVNSVQLERFRTLISHYK-----GIEAS 195
           +      + K   +  + SHL  +D           +Q+  F  ++   K      ++  
Sbjct: 142 NII-RILSFKNIDVKGVFSHLCVSDSIDKKDIEFTKLQINHFNNIVKVLKENGYTNLKFH 200

Query: 196 LASSSGILLGPNYHFQLTRPGISLYGG----TDKINKSHPMQTVVTAEARIILIRKALAG 251
           +  S G+L  P+  +   R GI+LYG     +DKI     ++ V++ +AR+ ++R+ +  
Sbjct: 201 IQGSYGVLNYPDLKYDYARVGIALYGVLSKKSDKIKLDLDLKPVLSLKARVEVVRELMKN 260

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
           E V YG   K  +   IAV +IGYADG    LS             G   I G  VPI+ 
Sbjct: 261 ETVGYGLDFKAEKKCKIAVVSIGYADGISRKLSN----------NNGFVLINGIKVPIIA 310

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           +I MD    D++    ++  D +   G     +I  +D+A    T   ++L R+G R  +
Sbjct: 311 RICMDQLFIDVSKVDDVKRDDEVVFIGQSGNEEISAEDMANNLDTITNEILSRLGERLKR 370

Query: 368 FY 369
            Y
Sbjct: 371 IY 372


>gi|170016583|ref|YP_001727502.1| alanine racemase [Leuconostoc citreum KM20]
 gi|169803440|gb|ACA82058.1| Alanine racemase [Leuconostoc citreum KM20]
          Length = 376

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 105/379 (27%), Positives = 168/379 (44%), Gaps = 29/379 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               ++IDL A++ N  S+ A +G  R  AVVK + YG G   +A ALY  GV+DF V +
Sbjct: 11  RPSWIEIDLGAIQENAQSIMAHAGAKRLIAVVKADGYGHGATPVANALYEIGVRDFAVAT 70

Query: 65  VEEGVKLRL--YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           + EG+KLR        RI +L         ++    L P I S+  L+   + +  G + 
Sbjct: 71  IGEGIKLRQELAYQDYRIVLLGVQDIAHVDVMVKYRLSPAIESIDWLSVALQAIPEGATL 130

Query: 123 PYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              L VDTG  R+G   +EA+        N    +L  + +H A ADD +      Q +R
Sbjct: 131 DVELAVDTGMGRMGAHSKEAVYSVYRYIKNNDKLELGGVFTHFATADDSNIGYYKQQAQR 190

Query: 182 FRTLISHYKGIEA---SLASSSGILLGPN-YHFQLTRPGISLYGGTDKIN---KSHPMQT 234
           F   ++   GI      LA+S   L        +  R G  LYG            P++ 
Sbjct: 191 FNDWVTAA-GIPRQYWHLANSGSALWHTQEIDTRTIRVGSVLYGYNPGAPLLTLPIPLKH 249

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V   ++RI  + + + GE VSYG      +   +A   IGYADGY   ++G+        
Sbjct: 250 VFALKSRIGAVHQLITGESVSYGATYTAQKPQWVATLPIGYADGYLRRMAGM-------- 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               +  I G +  ++G+ITMD  +  +  +    +G  + + G D    I +++ A  +
Sbjct: 302 ----RVLINGKVTYVIGRITMDQIVIALDQAYP--IGTEVTLIGRDGDNEITVEEFADYA 355

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T  +++L   G R  + Y
Sbjct: 356 NTIPHEILTSFGPRLPRIY 374


>gi|318042533|ref|ZP_07974489.1| alanine racemase [Synechococcus sp. CB0101]
          Length = 396

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 107/383 (27%), Positives = 170/383 (44%), Gaps = 28/383 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           H  +   +++   A++ N  S+   L+   +  AVVK + YG G   +A A    G   F
Sbjct: 17  HPRQRAWVEVCEAAVQANARSLRRSLAPGCQLMAVVKADGYGHGAVPVARAAAAGGASTF 76

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118
            V +++EGV+LR    +  + VL  +  P + +      L+P +S + +      L +  
Sbjct: 77  GVATLQEGVELRQAGLRQPVLVLGNLTQPEELRACLHWQLMPTLSGMREALLCQNLAAGS 136

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVN 175
           G      L++DTG  RLG   QE           +  QL+ + SHLA AD P      + 
Sbjct: 137 GRPMAVQLKLDTGMARLGAPWQEGRRIAEAISALEAVQLAGLYSHLADADAPGTVLDPLT 196

Query: 176 SVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINK 228
             Q ERF  +++  +          LA+S+G L     H+ + R G++LYG      +  
Sbjct: 197 RQQQERFEQVLTGVQEAGLACGSRHLANSAGTLRTAQLHYDMVRVGLALYGQRPAVHLGG 256

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           S  +Q  +   AR+ LIR+  AG  VSYG +    R S +AV +IGYADG P  LS    
Sbjct: 257 SLALQPAMQVRARVSLIREVPAGTGVSYGHRFTTQRPSRLAVVSIGYADGVPRLLSNRL- 315

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                     +    G  +P +G ITMD  + D T++  +E G  + + G D    I   
Sbjct: 316 ----------QVLHHGRRIPQVGAITMDQLVLDATEAPELEQGSVVTLLGSDGGERIDPL 365

Query: 345 DVALASGTTNYDLLVRIGTRYAK 367
             +   GT  +++L     R  +
Sbjct: 366 AWSDPCGTIPWEILCGFKHRLPR 388


>gi|332283733|ref|YP_004415644.1| alanine racemase, catabolic [Pusillimonas sp. T7-7]
 gi|330427686|gb|AEC19020.1| alanine racemase, catabolic [Pusillimonas sp. T7-7]
          Length = 376

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 152/387 (39%), Gaps = 39/387 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMN---------ALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55
             +   + +++L +N   +          A     R  AV+K NAYG G ++       A
Sbjct: 3   RPISATVSVSSLSHNLQRVANGLQQSCNAAKPLRPRVWAVIKANAYGHGIDQAVQGF--A 60

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
                 +  + E V+ R       I +L G   PG   ++ +  L   +    QL   + 
Sbjct: 61  QADGLAMLDLNEAVRCRELGWTKPILLLEGFFEPGDIAVLDEYCLTTSLHCQEQLEMLAA 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL---SLIISHLACADDPS 171
                      ++++ G NRLG S     D    +   +   +      +SH A A D S
Sbjct: 121 AKPAN-PLNAFVKLNVGMNRLGFSEYAFPDAYRQAQQLQQQGILASVGKMSHFARA-DDS 178

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGIL---LGPNYHFQ---LTRPGISLYGGTD- 224
               + QL+ F  +     G   S+ +S+  L   L            RPGI LYG +  
Sbjct: 179 PVTTTQQLQVFNRMTQGLPG-PFSVCNSAASLTAGLWTTVSSDEEQWVRPGICLYGSSPF 237

Query: 225 --KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             ++  +  ++  +T  A++I +R+   G  V YG     +    I + A GYADGYP  
Sbjct: 238 EDRLPDALGLRPAMTLAAQLISVREIPRGAGVGYGHVFTASDAMRIGIVACGYADGYPRH 297

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DI 341
                         G    + G    ++G+++MDM   D+T      VG  + ++G    
Sbjct: 298 AG-----------TGTPICVDGVRTRLVGRVSMDMLAVDLTPVPQAGVGSPVVLWGEGGP 346

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKF 368
            +D+VA A+GT  Y+LL  +  R  + 
Sbjct: 347 SVDEVAQAAGTIGYELLCAVAPRVPRV 373


>gi|251799573|ref|YP_003014304.1| alanine racemase [Paenibacillus sp. JDR-2]
 gi|247547199|gb|ACT04218.1| alanine racemase [Paenibacillus sp. JDR-2]
          Length = 389

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 146/374 (39%), Gaps = 26/374 (6%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +I L+ ++ N  ++   L  + +  AVVK N YG G  + A A   AG     V  +E
Sbjct: 6   WAEISLSRIRENMLNIRRSLPVSVKLMAVVKANGYGHGDIESAKAAMRAGADYLAVAYLE 65

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E ++LR    +  I VL  I P   ++    +L   ++S    +       C        
Sbjct: 66  EAIRLRDAGLKLPILVLTPIRPELVQLALRHDLSLTVTSAKWFSEMRIFKPCPAGKLRVH 125

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++DTG  R+G+  +E  D        +   +    +H A A    +     Q  RF  +
Sbjct: 126 VKMDTGLGRIGIRTKEEWDELVPWLQAEDVDVDGFYTHFATAGQEDTGFLEQQTARFLDM 185

Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAE 239
               +           A S   L  P+    + R G ++YG    K+     ++  ++  
Sbjct: 186 KEWTRASGLAIRHYHCAGSVAALRFPHLAMDMVRIGAAMYGFYPAKLACPVKLEPALSLH 245

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R+I ++K + GE + Y    +   +  I    IGYADG+   + G D            
Sbjct: 246 SRLIQVKKLVKGEYIGYDNSYRAEEEEWIGTVPIGYADGWAQRMQGTD------------ 293

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G+  PI GKI MD  M  +        G  + + G      I   ++A+  G+   
Sbjct: 294 VLIGGHRTPIAGKICMDQLMIKLPG--PCAEGTPVTLIGTQGGQRITFAELAVHIGSVAQ 351

Query: 356 DLLVRIGTRYAKFY 369
           ++   +G R  + Y
Sbjct: 352 EVSTSLGGRITRTY 365


>gi|189913008|ref|YP_001964897.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|189913337|ref|YP_001964566.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|167777684|gb|ABZ95984.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167781405|gb|ABZ99702.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 376

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 106/391 (27%), Positives = 167/391 (42%), Gaps = 41/391 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S++     +  +A  +N      L    ++  AVVK NAYG G    A    +AG   
Sbjct: 1   MQSSQIY---LSRSAFSHNIALFRKLIGPKSKFTAVVKSNAYGHGLLATASIALDAGADY 57

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             V S+EE + +R    +A I ++  I     +   + D N   ++S + ++   +KL  
Sbjct: 58  LGVNSLEEALSIRRVFSKATILIMGSIPHLKERVAELADENFWVMVSRIEEMELLAKL-- 115

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176
              +    L+VDTG +RLG+  Q A         KKL  L+ I +H A  +D      + 
Sbjct: 116 -SPTPKIHLKVDTGMSRLGIPHQNAEVIAKEIAEKKLP-LTGIATHFASTEDFTEHSHSM 173

Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229
           +QL  F+  I  +       +    ASS+  +L       L R GISLYG    +     
Sbjct: 174 LQLGNFQDTIDTFAKHGFIDLICHCASSASAMLFSEARMDLVRVGISLYGLWPSLETKLS 233

Query: 230 --------HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                     ++  +T + +I  I+    G  V YG   K T ++ +AV  +GY +G   
Sbjct: 234 LSLMKKDVGMLKPALTWKTQIQHIQNLNPGTFVGYGSTFKTTHETRLAVVPVGYYEGLDR 293

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
            LS             G   + G    ILG+I M+MTM DIT     ++GD + I G   
Sbjct: 294 KLSNH-----------GYMLVHGERAKILGRICMNMTMLDITHIPDAKIGDDVVIIGKSG 342

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKF 368
              I  DD A  +GT NY+++ +I   + + 
Sbjct: 343 NEMISADDHATWTGTINYEVVTKILGSFPRI 373


>gi|289548107|ref|YP_003473095.1| alanine racemase [Thermocrinis albus DSM 14484]
 gi|289181724|gb|ADC88968.1| alanine racemase [Thermocrinis albus DSM 14484]
          Length = 337

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 181/364 (49%), Gaps = 33/364 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           L+I+  AL  N   +N  +G  +  AVVK NAYG+G   IA  L     V  F V  VEE
Sbjct: 5   LEINRDALLQNVKRINTFTGK-KLIAVVKANAYGVGATLIASLLEPLEEVAAFAVACVEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           GV+LR    +  I VL G+ P + + +   NL PV+S    L         G    + ++
Sbjct: 64  GVELREAGVKKPILVLGGVLPEELEELVRWNLTPVVSHPSHLKALE-----GSFVKFHVK 118

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  RLG       +   +       ++  +++HL+            Q+E FR ++S
Sbjct: 119 YDTGMGRLGF----LEEIIQDR------RVEGVMTHLSHPA--DRSFTLKQIETFRKIVS 166

Query: 188 HYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           HY+G++   L SS+G++   +Y     R G++LYG     +    +   ++ +ARII ++
Sbjct: 167 HYRGVKWVHLESSAGLIYRVDYATH-VRVGLALYGEKPLSSYPIELSPALSLKARIISVK 225

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  VSYG    L RD+ + V AIGYADG   +LSG             + + +G  
Sbjct: 226 VLPAGHRVSYGDSCVLKRDTRVGVVAIGYADGLLKSLSG-----------KARFYYRGVP 274

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           VP+LG ITMDMTM D++ S+  EVGD+++I GP      +A  +GT  Y+L+  +  R  
Sbjct: 275 VPLLGNITMDMTMVDLS-SVEAEVGDWVEIVGPHQSFTQLAKEAGTIPYELMSLLSRRVH 333

Query: 367 KFYT 370
           + + 
Sbjct: 334 RVFA 337


>gi|198284522|ref|YP_002220843.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666734|ref|YP_002427188.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|254802357|sp|B7J911|ALR_ACIF2 RecName: Full=Alanine racemase
 gi|254802358|sp|B5EP95|ALR_ACIF5 RecName: Full=Alanine racemase
 gi|198249043|gb|ACH84636.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518947|gb|ACK79533.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 364

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 161/372 (43%), Gaps = 21/372 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL++N   +   +  AR  A VK NAYG G    AP L  AGV  F V S
Sbjct: 3   RPIVADISAAALRHNVAVVREHAPRARIMAAVKANAYGHGVTLCAPVLAEAGVDAFAVAS 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE   L     +  I +L G     E  +  +   + VI    QL +  +  +   +  
Sbjct: 63  LEEAEALHALGLERPICLLGGPFDADEVSVAAERAYLLVIHEQRQLQWL-ETRAADAALR 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VDTG +RLG + +               ++  ++SHLA +D P    N  Q   F 
Sbjct: 122 LFIKVDTGMHRLGFAPERLPALFAALQRHPRWEVLGLMSHLARSDTPDDPFNRQQAGVFA 181

Query: 184 TLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237
             I+H   + A   SLA+S G+L  P  H    RPG+ LYG +    +      +Q V++
Sbjct: 182 DAIAHVGHVTAGQHSLANSGGVLALPFTHQYWVRPGLMLYGLSPFAGRRGSEIGLQPVLS 241

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + ++ IR+   G+ + YG   +      + V A GY DGYP  L             G
Sbjct: 242 WRSAVVAIRELGPGDWLGYGAAWQAPARCRVGVVAAGYGDGYPRHLG-----------CG 290

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYD 356
               + G     L +++MDM   D+T ++  ++G  + + G     L+ +A   GT +Y+
Sbjct: 291 APVTVAGQTTRTLARVSMDMLFVDLT-AVEADIGAPVVLMGAGGPPLESLAAELGTISYE 349

Query: 357 LLVRIGTRYAKF 368
           +  R+  R  + 
Sbjct: 350 MSCRMQMRVPRR 361


>gi|145225510|ref|YP_001136188.1| alanine racemase [Mycobacterium gilvum PYR-GCK]
 gi|145217996|gb|ABP47400.1| alanine racemase [Mycobacterium gilvum PYR-GCK]
          Length = 383

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 151/377 (40%), Gaps = 26/377 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL A+ +N   +   +G A   AVVK + YG G   +A A   AG  +  V +++E 
Sbjct: 14  AVIDLDAIAHNVGVLRDRAGRAAVMAVVKADGYGHGATAVARAALAAGATNLGVATLDEA 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127
           + LR     A +                 ++   +SS  Q       +   G +    ++
Sbjct: 74  LSLRRDGVTAPVLSWLHPPGTDFTPAVQADIEVALSSRRQLDDLLRAVARTGRTATVTVK 133

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            DTG +R G+S  +           +      +  ++SHLA  D P    N  Q  R   
Sbjct: 134 ADTGLSRNGVSPADHPGLVSALARAQTDGAVTVHGLMSHLAHGDVPDHPFNDEQARRLTE 193

Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTA 238
           + S  +          L +S   L  P+  F + RPGI++YG T    +    ++  +T 
Sbjct: 194 MASEARSAGVAYDVVHLCNSPAALTRPDLAFDMVRPGIAVYGQTPIPERGDMGLRPAMTV 253

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  + L+R   AG+ VSYG      RD+ +A+   GYADG    LS              
Sbjct: 254 KCPVALVRSVRAGDGVSYGHTWLAPRDTTLALIPAGYADGVFRALSNRF----------- 302

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALASGTT 353
           +  I G   P +G++ MD  + D+      +  GD   +FGP    +    D A   GT 
Sbjct: 303 EVTINGRRYPNVGRVCMDQFVVDLGPGPVDVAEGDDAILFGPGDDGEPTAQDWADLLGTI 362

Query: 354 NYDLLVRIGTRYAKFYT 370
           NY+++     R  + Y 
Sbjct: 363 NYEVVTSPRGRIVRGYV 379


>gi|257126593|ref|YP_003164707.1| alanine racemase [Leptotrichia buccalis C-1013-b]
 gi|257050532|gb|ACV39716.1| alanine racemase [Leptotrichia buccalis C-1013-b]
          Length = 365

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 155/372 (41%), Gaps = 21/372 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             +I++  L +N   +  +    +  AV+K +AYG G  KI  AL   G+++F V + +E
Sbjct: 4   WAEININNLYSNIDEIEKIVAKDKIIAVIKADAYGHGMLKICDALIKKGIKNFAVATSDE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YAL 126
            +K++       + +L  +      +I D N+  +++   ++ +  K            +
Sbjct: 64  ALKIKELHNDIMVLILGPVENEYMDLIADKNIYFMVTDFEEIEYLEKTGGKKGKTTDVFI 123

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG  R+G    E  D      N        I S    + D       +Q  +F+ + 
Sbjct: 124 KIDTGMGRVGFQESEVEDLNKILKNSSHINPIGIFS-HFSSSDSDKDYTKLQESKFKAMC 182

Query: 187 SHY-KGIE----ASLASSSGILLGPNYHFQLTRPGISLYGGT-DKINKSHPMQTVVTAEA 240
                GI       L +S G L   +      R GI LYGG  D+    +  + V++  A
Sbjct: 183 EKISSGIPSIKYRHLHNSFGTLKFQDSIEDFVRVGIILYGGVIDEETFPYKFKPVMSLLA 242

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I  I+       +SYG   K       A  +IGYADG    LS             G  
Sbjct: 243 KISYIKTLKEDSFISYGNTYKGKAGGTYATVSIGYADGVRRDLSN-----------KGYV 291

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           F KG+   I+G++ MD  M  + D L    + GD ++ FG +I + +VA    T +Y+++
Sbjct: 292 FYKGHKCEIVGRVCMDQLMILLPDELKDMAKKGDIVEFFGENISVVEVADLCNTISYEIM 351

Query: 359 VRIGTRYAKFYT 370
             I  R  + Y 
Sbjct: 352 CGISQRVPRIYV 363


>gi|320528033|ref|ZP_08029199.1| alanine racemase [Solobacterium moorei F0204]
 gi|320131659|gb|EFW24223.1| alanine racemase [Solobacterium moorei F0204]
          Length = 372

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 151/364 (41%), Gaps = 23/364 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            ++++L  ++ N   +  +    +  AV+K +AYG G   +A A+  AG +   V+S++E
Sbjct: 6   WMQVNLDKIERNLIQLKEICQK-KIIAVLKADAYGCGDIHVARAVLEAGAEMIAVSSLDE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR    + ++ +L         I+    +     S         +          L+
Sbjct: 65  ALVLRNEGYEGKLLILGATEASDIPILIKHGISCTAYSTEW--VIKAIKQNCEGLHVHLK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG +R+G    + L             +  I +H  CA D +S++ ++Q  +F+  + 
Sbjct: 123 VDTGMSRIGFRTIDELHLAFEKLQAANCDMEGIFTHFCCA-DSNSNLTNLQFSKFKEAVE 181

Query: 188 HYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +          +S              R GISLYG +        ++  ++  + ++++
Sbjct: 182 SFSYTFPWVHCDNSDATAFFQEDTSNACRIGISLYGIS---TYEKSLEPAISLYSEVVMV 238

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +   AG+ V YG       D +IA   IGYADG+     G             K ++ G 
Sbjct: 239 KHMHAGDTVGYGATYTAKDDEIIATLPIGYADGFVRANQGR------------KVYVDGQ 286

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
              I+G++ MD  M  +   + ++    ++IFG  I L+ +A    T  Y+++  + +R 
Sbjct: 287 YAEIVGRVCMDQVMIHLEQEVPVK--TVVEIFGEHISLEKMAEELNTIPYEIICLLSSRV 344

Query: 366 AKFY 369
            + Y
Sbjct: 345 TRRY 348


>gi|259416801|ref|ZP_05740721.1| alanine racemase [Silicibacter sp. TrichCH4B]
 gi|259348240|gb|EEW60017.1| alanine racemase [Silicibacter sp. TrichCH4B]
          Length = 345

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 127/365 (34%), Positives = 185/365 (50%), Gaps = 25/365 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RLKI+L AL  NW +++A +    TAAVVK N YGL   ++  AL  AG ++FFV   E
Sbjct: 4   ARLKINLDALAINWRNLDAKTS-CETAAVVKANGYGLESGRVGKALAQAGARNFFVAIAE 62

Query: 67  EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG+ LR    P   I V  G   G  K++ D  L P+++S+ Q+    +       HP+ 
Sbjct: 63  EGIALRRALGPGPGISVFSGHMEGDAKLLRDFQLTPMLNSLDQML---RHFESMPGHPFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D+G NRLG+   E +     + ++      L++SHLACAD+P   +N  QL+ F  +
Sbjct: 120 VQLDSGMNRLGMEAAEWMAVRDIALDQN---PVLLMSHLACADEPGHGMNPYQLKNFIEM 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 +  SLA++ G+LLG +YHF L RPGI LYGG    +       VV  E  +I  
Sbjct: 177 TEGL-NLPRSLAATGGLLLGRDYHFDLCRPGIGLYGGAPYSDA----LPVVELEVPVIQT 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG      RD+ IA  A GYADG                  G   +    
Sbjct: 232 RDLAPGESVGYGNTWIAQRDTRIATIAAGYADGLHRAFQ----------RQGIMAYAGST 281

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++G+I+MD+   DITD   +    Y+ +      +D +A A+ T  Y++L  +G RY
Sbjct: 282 PCPVVGRISMDLITVDITDLDDVPP--YLSLINEAQTVDVLANAADTIGYEVLTSLGNRY 339

Query: 366 AKFYT 370
           A+ Y+
Sbjct: 340 ARTYS 344


>gi|163739575|ref|ZP_02146984.1| alanine racemase [Phaeobacter gallaeciensis BS107]
 gi|161387034|gb|EDQ11394.1| alanine racemase [Phaeobacter gallaeciensis BS107]
          Length = 345

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 131/365 (35%), Positives = 188/365 (51%), Gaps = 25/365 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RL ++L AL  NW +++AL+ N  TAAVVK N YGL   ++  AL NAG ++FFV   E
Sbjct: 4   ARLTLNLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGRALANAGARNFFVAMAE 62

Query: 67  EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EGV LR    P   I V  G   G  K++ D  L P+++S+ Q+    +       HP+ 
Sbjct: 63  EGVALRRAIGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQML---RHFESLPGHPFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+DTG NRLG+   E       + ++      L++SHLACAD+ +  +NS QL+ F  L
Sbjct: 120 VQLDTGMNRLGMEAAEWAAVRDIALSQG---PVLLMSHLACADETTHPMNSHQLQNFLDL 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 +  SLA++ G+LLG NYHF L RPGI LYGG    +       V   +  +I I
Sbjct: 177 TEGL-DLPRSLAATGGLLLGRNYHFDLCRPGIGLYGGQPYGDA----LPVAQLDLPVIQI 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG      R S IA  A GYADG    L               + +    
Sbjct: 232 RSLDPGETVGYGNSWAAQRPSRIATVAAGYADGLHRALGSGQI----------QVYAGDT 281

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++G+++MD+   D+TD        ++ I      +D +A A+GT  Y++L  +G+RY
Sbjct: 282 PCPVVGRVSMDLITVDVTDLGDDP--SHLAILNERQTVDTLADAAGTIGYEILTSLGSRY 339

Query: 366 AKFYT 370
           A+ YT
Sbjct: 340 ARSYT 344


>gi|254465901|ref|ZP_05079312.1| alanine racemase [Rhodobacterales bacterium Y4I]
 gi|206686809|gb|EDZ47291.1| alanine racemase [Rhodobacterales bacterium Y4I]
          Length = 345

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 184/364 (50%), Gaps = 25/364 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RL I+L AL  NW +++AL+ N  TAAVVK N YGL   ++  AL  AG ++FFV + E
Sbjct: 4   ARLTINLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGKALARAGARNFFVAAAE 62

Query: 67  EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG  LR    P   I V  G   G  K++ D  L P+++S+ Q+    +       HP+ 
Sbjct: 63  EGGALRRALGPGPGISVFSGHMEGDAKLLKDFQLTPMLNSLDQML---RHFETLPGHPFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D+G NRLG+   E       +  +      L++SHLACAD+P   +N+ QL  FR L
Sbjct: 120 VQLDSGMNRLGMEPGEWAAVAEIALGQN---PVLLMSHLACADEPGHGMNARQLHTFREL 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 I  SLA++ G+LLG +YHF L RPGI LYGG    +       VV  +  +I +
Sbjct: 177 TDGL-DIPRSLAATGGMLLGSDYHFDLCRPGIGLYGGLPFKDA----LPVVQLDLPVIQV 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE   YG      R S IA  A GYADG    +             G + +    
Sbjct: 232 RDMEPGESAGYGNAWVAKRPSRIATVAAGYADGLHRAMG----------QGGIQVYAGDT 281

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++G+++MD+   D+TD   +   D + I      +D +A A+GT  Y++L   G R 
Sbjct: 282 PCPVVGRVSMDLITVDVTDLAEVP--DMLAILNERQTVDMLADAAGTIGYEILTSSGHRS 339

Query: 366 AKFY 369
           A+ Y
Sbjct: 340 ARTY 343


>gi|315501356|ref|YP_004080243.1| alanine racemase [Micromonospora sp. L5]
 gi|315407975|gb|ADU06092.1| alanine racemase [Micromonospora sp. L5]
          Length = 372

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 162/376 (43%), Gaps = 29/376 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A++ N   + A +  A   AVVK + YG G    A A  +AG     V +++E 
Sbjct: 6   VRVDLDAIRENVTRLKAGTS-AELMAVVKGDGYGHGMVPAARAALDAGADQLGVCTLDEA 64

Query: 69  VKLRLYTPQARIF--VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           ++LR     A +   +L    P  + I    +L     +                    L
Sbjct: 65  LRLREEGITAPVLAWLLSPGLPLHDGITVGVDLGCAGLT-QLDEMIQASRRADRPARLHL 123

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++DTG  R G ++ +       +   +   L ++  + SH   AD P       QL  F+
Sbjct: 124 KIDTGLARGGATVADWPALLEAAAKAQADGLVEVVGVWSHFVYADSPGHPTTDRQLAVFQ 183

Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
             +     +  +     LA+S+  L  P+ HF L RPGI++YG +    +   ++  +TA
Sbjct: 184 EGLEMVTRAGLRPRYRHLANSAATLTRPDTHFDLVRPGIAVYGLSPVAGEQFGLRPAMTA 243

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            AR++L ++  AG  VSYG      +++ +AV  +GYADG P   S             G
Sbjct: 244 RARVMLTKRVAAGTGVSYGHTYLTEQEANLAVVPLGYADGVPRHASNT-----------G 292

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354
              + G    I G++ MD  + D  D   +  GD   +FG     +   DD A A GT N
Sbjct: 293 PVQLAGKRRTISGRVCMDQFVVDCGDD-EVADGDVATLFGSGADGEPTADDWAEAVGTIN 351

Query: 355 YDLLVRIGT-RYAKFY 369
           Y+++ R G  R  + Y
Sbjct: 352 YEIVTRFGGVRVPRVY 367


>gi|213585856|ref|ZP_03367682.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 316

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 96/329 (29%), Positives = 148/329 (44%), Gaps = 21/329 (6%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISS 105
           + A  L +     F V  +EE ++LR       I +L G     +   I    L   + +
Sbjct: 1   ETARTLPD--ADAFGVARLEEALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHN 58

Query: 106 VPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHL 164
             QL     +          +++DTG +RLG+  +EA  F       K + Q   I+SH 
Sbjct: 59  QEQLAALEAV-ELAEPVTVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHF 117

Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
           A AD+P       QL+ F        G + S+A+S GILL P  HF   RPGI LYG + 
Sbjct: 118 ARADEPECGATEHQLDIFNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSP 176

Query: 225 KINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
             +K        Q V++  + +I +R   AGE V YGG     RD+ + V A+GY DGYP
Sbjct: 177 LEHKPWGPDFGFQPVMSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP 236

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                           G    + G  VPI+G++ MDM   D+  +     GD + ++G  
Sbjct: 237 RAA-----------PSGTPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEG 285

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + ++ +A  +  + Y+L+ R+ +R A  Y
Sbjct: 286 LPVERIAEMTKVSAYELITRLTSRVAMKY 314


>gi|145589102|ref|YP_001155699.1| alanine racemase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047508|gb|ABP34135.1| alanine racemase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 374

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 20/372 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA--GVQDFF 61
           N  +   I   A ++N + +  L+  ++  +V+K  AYG        A          F 
Sbjct: 10  NRPILASIHTQAFRHNLNRVRELAPESKIWSVIKARAYGH----CFDAALKGLSSTDGFA 65

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCG- 119
           +  +++ V LR +  + R+ +L G+    E  +  + +   V+    Q+ +  K +  G 
Sbjct: 66  LLDIQDAVWLREHGWEGRVLLLEGLFHENELELAQELSCDLVVHCEAQVEWLEKYIEQGH 125

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQ 178
                 L+++TG NRLG   +      H       G     ++H A AD          Q
Sbjct: 126 KPFSIFLKMNTGMNRLGFKPEAYRTAFHRLHA--FGCRMHHMTHFANADQADQRPTVGEQ 183

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQT 234
            E F   I    G   SLA+S+ IL   N      RPGI LYG +        +   ++ 
Sbjct: 184 QEVFERTIDGLSG-PTSLANSAAILWHRNALGGWIRPGIMLYGASPTGIYADIEHAHLKA 242

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  ++ II I++  AG+ V YGG+ +      I + A GYADGYP T      + +P  
Sbjct: 243 VMQLQSEIIDIQELKAGDGVGYGGRYQAPEAMRIGIVACGYADGYPRTA----KDGTPVW 298

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              G     G + PI+G+++MDM   D+ ++   ++G  ++++G  I +D+VA  S T  
Sbjct: 299 VSIGAEDGNGIVCPIVGRVSMDMLTIDLRNAPQAKIGSVVELWGDRIPVDEVARMSDTIG 358

Query: 355 YDLLVRIGTRYA 366
           Y+LL  +  R  
Sbjct: 359 YELLCAVAPRVP 370


>gi|145219160|ref|YP_001129869.1| alanine racemase [Prosthecochloris vibrioformis DSM 265]
 gi|145205324|gb|ABP36367.1| alanine racemase [Chlorobium phaeovibrioides DSM 265]
          Length = 368

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 156/378 (41%), Gaps = 25/378 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                + L  L++N   +   +G   R   VVK NAYG    +++  L   GV DF V +
Sbjct: 1   MTEAIVSLQHLQHNLSEIRRKTGEGVRIMGVVKANAYGHDVHRVSETLEQNGVTDFGVAN 60

Query: 65  VEEGVKL---RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGV 120
           ++E ++L   R     A I         Q        +   + +        S   + G 
Sbjct: 61  IQEAIELQTGRALKKPASILAFASPLSSQIPFYLKHGIEMTLCNKETLFAAESHAAATGK 120

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                ++VDTG  RLGL    A++    S      ++  I +H A +          QL 
Sbjct: 121 KLRVHIKVDTGMGRLGLPPAAAMELLRASEQCPGIEVKGIYTHFADSSG-DMEFTRRQLR 179

Query: 181 RFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233
            F +L S Y     K +    A+S  IL  P  +  + RPGI+LYG     +      ++
Sbjct: 180 DFLSLASEYEHSSGKQVLRHAANSGAILSLPEANLDMVRPGITLYGYHPAKETGTRLSLK 239

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  E +I  ++   +G  +SY    +    + IA  A GYADGYP  LSG        
Sbjct: 240 PVMQVEGKIAFLKTVPSGSTISYCRTWRAPATTTIATIAAGYADGYPRALSG-------- 291

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASG 351
              G +    G     +G ITMD  M D+  S + +VGD + +FG +     + +A  S 
Sbjct: 292 --KGARVTANGQSFSQVGTITMDQIMVDLGTSSTAKVGDRVILFGWEGPTTAETLADLSN 349

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++L  +  R  + +
Sbjct: 350 TISYEILCAVSRRADRIF 367


>gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 827

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 98/371 (26%), Positives = 158/371 (42%), Gaps = 23/371 (6%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL A+ +N       L    +  A+VK   YG+G  ++A  L    V    V   +E
Sbjct: 467 LEVDLDAVAHNLQYYRSKLPQGTQCIAMVKAQGYGVGAYEVAKKLDQMHVGALAVAVADE 526

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPYA 125
           G +LR     + I V+    P     + + +L PV+ S   L   +  +      +    
Sbjct: 527 GRELRSQGILSPILVMNP-EPTAFDTLLEWHLEPVVFSWKLLRALANKIDKQGFDNIGVH 585

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRT 184
           ++VDTG +RLG    E  +         L +   I +HLA AD P        QLE FRT
Sbjct: 586 IEVDTGMHRLGFRPDEIPELARFFAQSHLLRARSIFTHLAAADMPEEDAFTRNQLEVFRT 645

Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
               +  I          +++G+   P Y F   R GI LYG +  ++K   ++  V   
Sbjct: 646 TADQFSEIAGYRPLYHALNTAGVERFPQYAFDCVRLGIGLYGISPSMDK--HLEPAVRLR 703

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             ++        E + YG +  LT+   I +  IGYADGY   +S             G 
Sbjct: 704 TTLLQKSYISGDETIGYGRRGHLTQGGEIGIIPIGYADGYSRRMS----------CGRGW 753

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLL 358
             + G   PI+G + MD  M D++     + GD + +FG  + +++D+A A  T  Y+L+
Sbjct: 754 VVVHGKRCPIVGNVCMDTCMIDLSQCPEAQEGDEVILFGDKEARIEDLARAIDTIPYELI 813

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 814 ADLAPRVRRVY 824


>gi|315445863|ref|YP_004078742.1| alanine racemase [Mycobacterium sp. Spyr1]
 gi|315264166|gb|ADU00908.1| alanine racemase [Mycobacterium sp. Spyr1]
          Length = 375

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 151/377 (40%), Gaps = 26/377 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL A+ +N   +   +G A   AVVK + YG G   +A A   AG  +  V +++E 
Sbjct: 6   AVIDLDAIAHNVGVLRDRAGRAAVMAVVKADGYGHGATAVARAALAAGATNLGVATLDEA 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127
           + LR     A +                 ++   +SS  Q       +   G +    ++
Sbjct: 66  LSLRRDGVTAPVLSWLHPPGTDFTPAVQADIEVALSSRRQLDDLLRAVARTGRTATVTVK 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            DTG +R G+S  +           +      +  ++SHLA  D P    N  Q  R   
Sbjct: 126 ADTGLSRNGVSPADHPGLVSALARAQTDGAVTVHGLMSHLAHGDVPDHPFNDEQARRLTE 185

Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTA 238
           + S  +          L +S   L  P+  F + RPGI++YG T    +    ++  +T 
Sbjct: 186 MASEARSAGVAYDVVHLCNSPAALTRPDLAFDMVRPGIAVYGQTPIPERGDMGLRPAMTV 245

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  + L+R   AG+ VSYG      RD+ +A+   GYADG    LS              
Sbjct: 246 KCPVALVRSVRAGDGVSYGHTWLAPRDTTLALIPAGYADGVFRALSNRF----------- 294

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALASGTT 353
           +  I G   P +G++ MD  + D+      +  GD   +FGP    +    D A   GT 
Sbjct: 295 EVTINGRRYPNVGRVCMDQFVVDLGPGPVDVAEGDDAILFGPGDDGEPTAQDWADLLGTI 354

Query: 354 NYDLLVRIGTRYAKFYT 370
           NY+++     R  + Y 
Sbjct: 355 NYEVVTSPRGRIVRGYV 371


>gi|167756231|ref|ZP_02428358.1| hypothetical protein CLORAM_01761 [Clostridium ramosum DSM 1402]
 gi|237734175|ref|ZP_04564656.1| alanine racemase [Mollicutes bacterium D7]
 gi|167704223|gb|EDS18802.1| hypothetical protein CLORAM_01761 [Clostridium ramosum DSM 1402]
 gi|229382735|gb|EEO32826.1| alanine racemase [Coprobacillus sp. D7]
          Length = 357

 Score =  332 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 161/373 (43%), Gaps = 22/373 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58
           M  +     +I+L  LK N  +            AV+K +AYG G  ++A  + +   ++
Sbjct: 1   MSLHRDTYAEINLKYLKENIETTYKKFKRP--LMAVIKADAYGHGYREVATYIKDIEYLE 58

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            F V ++ E ++LR       I +L  +     +  +    ++   + S+  +     L+
Sbjct: 59  MFAVATLPEAIELRELGITKGILILGAVPTSKEEIDLAIKYDISLTMISLDYMHHLETLI 118

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                    +++DTG +R+GL+ +  LD   N+ +     L  I +H A A D       
Sbjct: 119 DQ-QPLKIHIKLDTGMHRIGLTSKAQLDEMLNTIDYNKFILEGIFTHYATA-DGEQAAFD 176

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
            Q E F  L++ +K       +S+ +    +    L R GI +YG     N++   + V+
Sbjct: 177 QQRELFYDLVADHKFKYIHCCNSAAMAYHHDDRSNLGRIGIIMYGIDPAGNETKEFKQVM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  +++ LI+K  AG+ V YG       D  +A   IGYADG      G +         
Sbjct: 237 SLYSKVALIKKIKAGDRVGYGLTYTADEDEYLATIPIGYADGLIRKNQGRN--------- 287

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
               +I G    I+G++ MD  M  + ++  I+ GD ++IFG  I L  +A    T  Y+
Sbjct: 288 ---VYINGKYFEIVGRVCMDQIMVRVDET--IKEGDKVEIFGAHISLASMARELETIPYE 342

Query: 357 LLVRIGTRYAKFY 369
           ++  I  R  + Y
Sbjct: 343 IICLITKRVDRLY 355


>gi|260426149|ref|ZP_05780128.1| alanine racemase [Citreicella sp. SE45]
 gi|260420641|gb|EEX13892.1| alanine racemase [Citreicella sp. SE45]
          Length = 351

 Score =  332 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 187/365 (51%), Gaps = 26/365 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +L IDL A++ NW ++   +      AVVK + YGLG  ++APAL   G + FFV +  
Sbjct: 10  AQLTIDLAAIRANWRALANATTG-EAGAVVKADGYGLGVARVAPALAAEGARRFFVATAH 68

Query: 67  EGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EG+ +R        I V  G   G  +II D  L P+++S+ Q+    + +     H + 
Sbjct: 69  EGIAVRRALGAGPEICVFSGHMNGDAEIIRDHRLTPMLNSIDQML---RHVEALPGHSFG 125

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D+G NRLG+   E       +  +K     LI+SHLACAD+PS  +N+ QL  FR +
Sbjct: 126 IQLDSGMNRLGMEPAEWSALREIALAQK---PVLIMSHLACADEPSHGMNAFQLRTFREM 182

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 +  SL+++ GILLGP+YHF+LTRPG+ +YGG    +     + VV     +I +
Sbjct: 183 TDGL-DVPRSLSATGGILLGPDYHFELTRPGVGIYGGQPFADA----RAVVELMLPVIQV 237

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG        + +A  A GYADG    L+             G  +    
Sbjct: 238 RDVAPGESVGYGNAHVARVPTRVATVAAGYADGIHRALA-----------AKGAVWAGDT 286

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
              I+G+++MD+   D+T     +V + +++ G    +D VA A GT  Y++L  +G RY
Sbjct: 287 RCKIIGRVSMDLITVDVTALN--KVPEQLELLGRHQTVDMVADAVGTIGYEILTGLGARY 344

Query: 366 AKFYT 370
           A+ YT
Sbjct: 345 ARAYT 349


>gi|296168767|ref|ZP_06850456.1| D-alanine racemase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896550|gb|EFG76194.1| D-alanine racemase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 394

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 163/379 (43%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+++N   +   +G A+  AVVK + YG G  + A A    G  +  V +V
Sbjct: 19  LAEALVDLGAIEHNVRLLREHAGAAQVMAVVKADGYGHGATQAARAALAGGAAELGVATV 78

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
            E + LR     A +           +     ++   +SS  Q           G +   
Sbjct: 79  AEALALRAEGITAPVLAWLHPPGIDFRPALLADVEIAVSSERQLDELLDAARRTGRAATV 138

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            ++VDTG NR G+        L     +  +   +L  ++SH+  AD P + VN +Q +R
Sbjct: 139 TVKVDTGLNRNGVHPARYPSMLTALRRAVAENAIRLRGLMSHMVFADQPDNPVNDLQAKR 198

Query: 182 FRTLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTV 235
           F  +++     G+    A LA+SS  +  P+  F L RPG+++YG +         +   
Sbjct: 199 FADMLAQAGESGVRFEVAHLANSSATMSRPDLAFDLVRPGVAVYGLSPVPELGGMGLVPA 258

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + L++   AGE VSYG      RD+ +A+  +GYADG   +L G          
Sbjct: 259 MTVKCPVALVKSIRAGESVSYGHTWTAERDTTLALLPVGYADGVFRSLGGRL-------- 310

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350
              +  I G   P +G+I MD  + D+      +  GD   +FGP    +    D A   
Sbjct: 311 ---EVLINGKRRPGVGRICMDQFVVDLGPGRTDVAEGDEAILFGPGGSGEPTAQDWADVL 367

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+++     R  + Y
Sbjct: 368 GTIHYEVVTSPRGRITRTY 386


>gi|332882707|ref|ZP_08450318.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679209|gb|EGJ52195.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 369

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 154/379 (40%), Gaps = 23/379 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58
           M + E + L+IDLTAL+ N   +   L       AVVK ++YG    +IA  +       
Sbjct: 1   MKTEETV-LEIDLTALERNIQYLKSRLKPTTWFLAVVKASSYGNEATQIAAYIEKKKLAN 59

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            F V    EG+ LR       I VL+      + II    L P + S+     + +    
Sbjct: 60  YFAVAYTSEGIALRKRGISLPIIVLHPQSINFDDII-KYQLEPTLYSLRTAHLFLEYAEK 118

Query: 119 GV--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVN 175
                +P  L+ +TG NRLG    +  +      N    ++    SHLA ++D       
Sbjct: 119 HQLSDYPVHLKCNTGLNRLGFDFNQIDEVLSLLKNNATVKVKTAYSHLAASEDMNEKVFT 178

Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q++RF              +     ++SGIL  P   F + R GI +YG  +      
Sbjct: 179 ENQIQRFIAFQEKVNQTFAHKVIYHQCNTSGILNYPEAQFDMVRSGIGMYGFANDAALQP 238

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +  +++ ++ I  I +   G+ + Y         +  A   +G+ADG            
Sbjct: 239 YLTPIMSLKSVISQIHRLEIGDSLGYNRGYIADHITKTATIPVGHADGINRIYG------ 292

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                  G  FI G   PILG + MDM M DIT     E GD + +F  D   + +A ++
Sbjct: 293 ----KGKGFVFIHGKKAPILGNVCMDMIMVDITHI-DCEEGDEVIVFDKDHTAETLAESA 347

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+L+  +  R  + Y
Sbjct: 348 GTISYELMTSMAHRIKRLY 366


>gi|241895832|ref|ZP_04783128.1| possible alanine racemase [Weissella paramesenteroides ATCC 33313]
 gi|241870875|gb|EER74626.1| possible alanine racemase [Weissella paramesenteroides ATCC 33313]
          Length = 522

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 157/375 (41%), Gaps = 23/375 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +     ++I   A++ N   +  L+G     A+VK NAYG G  ++  A  +A V  F V
Sbjct: 157 TRRPAWIEISENAIQKNIAVIRELTGAHHFIAIVKANAYGHGMAQVLTAAKHANVDGFGV 216

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +++EG+ LR Y     IF+L          +    LIPV++S   L      +S   S 
Sbjct: 217 ATIDEGIWLRQYGILEPIFILGVTPVTYVDDLVKYQLIPVVTSEAWLNAAVNKLSSQASL 276

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLER 181
             ++ VDTG  R+G+   + L       N+     L  I  H A AD+        Q++ 
Sbjct: 277 VISIGVDTGMGRIGIRHHDELQRVVEKINQTDQLILKGIGMHFATADEKDEAYYQKQVQT 336

Query: 182 FRTLISHYK---GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVV 236
           +  L+        I   LA+S+  L          R G ++YG      +    Q    +
Sbjct: 337 WHELVDDLPLPQHIWYHLANSATALWHEQPSRDAIRVGAAMYGFNPSGKEMLASQLTPAL 396

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T +A ++ +++A AG  +SYG   +  +   I    +GYADGY   L G+          
Sbjct: 397 TLKAELVHVKQAEAGASISYGATYQTKQPEWIGTLPLGYADGYARQLQGMYGL------- 449

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
                  G  V I+G+I MD  M  + + +   +G  I + G     +I L D+A    T
Sbjct: 450 ----LPDGRHVEIIGRIAMDQLMVRLPEEMP--IGTVITLIGKAGDEEITLVDLAERLNT 503

Query: 353 TNYDLLVRIGTRYAK 367
             Y++   + TR  +
Sbjct: 504 IPYEIATSLSTRLPR 518


>gi|146328630|ref|YP_001209245.1| alanine racemase [Dichelobacter nodosus VCS1703A]
 gi|166967412|sp|A5EW54|ALR_DICNV RecName: Full=Alanine racemase
 gi|146232100|gb|ABQ13078.1| alanine racemase [Dichelobacter nodosus VCS1703A]
          Length = 357

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 92/361 (25%), Positives = 157/361 (43%), Gaps = 22/361 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+L AL++NW  +   S  A    V+K +AYG G   +A  L +   + F V+ +EE + 
Sbjct: 8   INLNALRHNWALIKQRSLPATPMVVLKADAYGHGMTTVAKTLDD--ARYFAVSCIEEAIA 65

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       + +L G++   E ++ +      ++ +  Q+ +  +      S    L+VD
Sbjct: 66  LRHLGIDTPVVLLEGVYRADELLLCEYYQFDTLVHNFRQMQWLKEF---NGSVKAWLKVD 122

Query: 130 TGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           +G +RLG +  E A  F          Q   +I+H AC+D+        QL     L+  
Sbjct: 123 SGMHRLGFTQDEIAEAFAQAHSLPVNIQWQGVITHFACSDEDDLTHAKKQLACMDRLVLP 182

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILI 245
               +   A+S+ I   P  H+  TR GI LYG +  ++     + +Q V+T    I+ +
Sbjct: 183 AHW-KRCYANSAAIFALPQAHYDYTRSGIMLYGLSPFMHGDGSAYGLQPVMTVITEILAV 241

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R     E   YG          +A  A+GY DG+  T++                 I G 
Sbjct: 242 RHLEKNETAGYGQGFTAPESGWLATIALGYGDGFARTITSGAV----------PVLIAGQ 291

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P++G++ MDM M  +      E G  +++FG  +  ++VA A+GT  + L   +  R 
Sbjct: 292 RYPLVGRVAMDMAMVWLGSDRYAE-GTIVELFGSHLPTEEVARAAGTIPHTLTTMLMPRV 350

Query: 366 A 366
            
Sbjct: 351 H 351


>gi|295398172|ref|ZP_06808218.1| alanine racemase [Aerococcus viridans ATCC 11563]
 gi|294973522|gb|EFG49303.1| alanine racemase [Aerococcus viridans ATCC 11563]
          Length = 387

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 98/388 (25%), Positives = 163/388 (42%), Gaps = 35/388 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +  + L A+ +N+ ++    GN    AVVK + YGLG  KIA AL + G   F V 
Sbjct: 6   HRPSKAIVSLDAIIHNYFAIKKHIGNKAVMAVVKADGYGLGAVKIADALQSRGADGFAVA 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GV 120
             +E ++LR     A I +L    P    ++ +  +   +SS+  L +  K         
Sbjct: 66  VADEALELRDAGIIAPIMILGLTDPDDAWLLANLEIGVTVSSLDYLKYAKKHDKDFSRLH 125

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNK-KLGQLSLIISHLACAD---DPSSHVN 175
                L+VD+G  R+G+ S +EA           K  +L+ + +H A AD   D      
Sbjct: 126 QLNVHLKVDSGMGRIGVRSAKEAQKIIDYIAKHPKKFKLASVFTHYATADSFTDHGKDKV 185

Query: 176 SVQLERFRTLISHYKG------IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK- 228
             Q + F +L+                ++S+  L  P       R G+ LYG    +   
Sbjct: 186 QAQSDFFESLLGQLDYSALGYTPLFHQSNSALSLWYPEKTLDAARLGLGLYGSIPSMEDV 245

Query: 229 --SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                 +  +T E  II +++  AG+ +SYG       D  +A   IGYADG+  +  GL
Sbjct: 246 ASPVDFKQALTLETEIIYVKQMHAGDTISYGADYVAGTDEWVATLPIGYADGWQRSYLGL 305

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLD 344
           D              + G   P +G+I MD  +  +   + +  G  + + G +    +D
Sbjct: 306 D------------AIVDGERCPSVGRICMDQMIIRLPHEMPV--GAKVTLIGTNGGQTVD 351

Query: 345 --DVALASGTTNYDLLVRIGTRYAKFYT 370
             DVA  +GT  +++L  +G R  + YT
Sbjct: 352 VVDVASHAGTIAHEVLTNLGQRLPREYT 379


>gi|94985480|ref|YP_604844.1| alanine racemase [Deinococcus geothermalis DSM 11300]
 gi|166967411|sp|Q1IYK9|ALR_DEIGD RecName: Full=Alanine racemase
 gi|94555761|gb|ABF45675.1| alanine racemase [Deinococcus geothermalis DSM 11300]
          Length = 355

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 107/369 (28%), Positives = 168/369 (45%), Gaps = 25/369 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP-ALYNAGVQDFFV 62
               +  I  +AL++N  ++   +G  +    VK +AYG G E +A  A  +  V  F V
Sbjct: 5   QARAQALISESALRSNLTALARQAG-TQLLLPVKADAYGHGMEIVARLAARHPAVWGFAV 63

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
               E   L        I +L      +   + D  +   ++S+ +              
Sbjct: 64  AVPREAATLAALGLGKPILLLTPPTLEEMGPLADLGVRLPVASLAEAEALPAHARA---- 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+VDTG NRLG   +EA+        + L  L    +H A AD+P       Q  RF
Sbjct: 120 --HLKVDTGMNRLGARPEEAVRVGQRLAERGL--LEGAYTHFATADEPDLSFARQQFARF 175

Query: 183 RTLISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEA 240
           + +++    + A  A+  G+L  GP     L RPG++ YG     +    P+  V+T +A
Sbjct: 176 QEVLAALPPVLAHAANGGGVLSFGPLPSLSLARPGLASYGFAPAHLRGVAPLTPVMTLQA 235

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+  +     GE VSYGG  + TR +++A   IGYADGYP   +G               
Sbjct: 236 RVTHVHAVYPGESVSYGGLWRATRKTIVATVGIGYADGYPRNATG-----------KACV 284

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLV 359
            ++G   P+LG+I MD  M D+TD L + VGD+++++G D I + DVA   GT  Y++L 
Sbjct: 285 LVRGECRPVLGRICMDQCMVDVTD-LEVRVGDWVEVWGTDKITVTDVAAWGGTVEYEVLT 343

Query: 360 RIGTRYAKF 368
            +G R  + 
Sbjct: 344 GLGARVERV 352


>gi|163857474|ref|YP_001631772.1| catabolic alanine racemase [Bordetella petrii DSM 12804]
 gi|226711028|sp|A9IU63|ALR_BORPD RecName: Full=Alanine racemase
 gi|163261202|emb|CAP43504.1| catabolic alanine racemase [Bordetella petrii]
          Length = 376

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 89/385 (23%), Positives = 148/385 (38%), Gaps = 39/385 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNAL---------SGNARTAAVVKDNAYGLGCEKIAPALYNA 55
             +   I L AL +N   +                   AV+K NAYG G E         
Sbjct: 3   RPIHASISLAALAHNLDVVRRHLDQAAQAAGGAPPSIWAVIKANAYGHGIEAAVAGFSA- 61

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
             Q   +  + E V+ R       I +L G   P    +I   +L   + +  QL   ++
Sbjct: 62  -AQGLAMLDLAEAVRCREAGWGGPILLLEGFFQPADLDLIDRYHLSATVHTREQLDMLAQ 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                      L++++G NRLG        A         + +      ++H ACA    
Sbjct: 121 AR-LSRRVDIMLKLNSGMNRLGFDPDAYGSAHARALQLREQGVVGAVGRMTHFACA--DG 177

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPN------YHFQLTRPGISLYGGTDK 225
           +   + QL  F+++         S+ +S+  L  P             RPGI LYG +  
Sbjct: 178 TPGVAGQLRVFQSVTQGLADGPVSVCNSAATLRYPEIAVAHGAQAHWVRPGICLYGASPF 237

Query: 226 INKS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            +       ++  ++  ++II ++   AG  V YG   +  R   + V A GYADGYP  
Sbjct: 238 ADADAASFGLRPAMSLRSQIIGVQDLPAGAEVGYGATFRAERPMRVGVVACGYADGYPRH 297

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-I 341
                         G    + G    ++G+++MDM M D+    +  +G  + ++G D  
Sbjct: 298 AG-----------TGTPVVVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVSLWGQDGP 346

Query: 342 KLDDVALASGTTNYDLLVRIGTRYA 366
            +D+VA A+GT  Y+LL  +  R  
Sbjct: 347 SVDEVAQAAGTIGYELLCALAPRVP 371


>gi|256545190|ref|ZP_05472556.1| alanine racemase [Anaerococcus vaginalis ATCC 51170]
 gi|256399231|gb|EEU12842.1| alanine racemase [Anaerococcus vaginalis ATCC 51170]
          Length = 368

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 155/377 (41%), Gaps = 31/377 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  N  L   +DL  + NN  S+   S N++  AV+K +AYGLG  ++A  + N  +   
Sbjct: 2   MEENYLL---VDLDKILNNIKSIKEKSQNSKFCAVLKADAYGLGSLEVANYIKNH-IDYI 57

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V   +E   LR    +  I +L  +   +       ++  VI  +      +       
Sbjct: 58  AVAQFKEAKYLRDNGIKIPILILGYLPIDKYNECGKLDIDVVIYDLDYAKEIN--SKLNS 115

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                + +DTG  R+G      ++        K        SH A AD+      + Q +
Sbjct: 116 KINCHIGLDTGHTRIGFR-DFEIEKIKKLKELKNLNFIGAFSHFATADEKDLTYTNEQYK 174

Query: 181 RFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--- 233
           +F  +I   K         +A+S+  +    +   L R GISLYG           +   
Sbjct: 175 KFTYIIDKIKDDFDLKLVHIANSAASMEYD-FKSDLLRVGISLYGVYPSDYIKEISKIKL 233

Query: 234 -TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             V   +A+I  ++    G  +SYG     ++D  +A  AIGYADG+    S +      
Sbjct: 234 EQVFEFKAQISFVKNVKKGTSISYGRTFTASKDMKVATVAIGYADGFKRAFSNI------ 287

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                G+  + G +  ++G++ MD  M D++D    ++GDYI ++ PDI  +  A    T
Sbjct: 288 -----GEVLVNGKLAKVVGRVCMDQMMIDVSDI-DCKIGDYITLY-PDIYKE--AKKINT 338

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y+L+  I  R  + Y
Sbjct: 339 IPYELMTSISKRVPRIY 355


>gi|325675498|ref|ZP_08155182.1| D-alanine racemase [Rhodococcus equi ATCC 33707]
 gi|325553469|gb|EGD23147.1| D-alanine racemase [Rhodococcus equi ATCC 33707]
          Length = 414

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 167/381 (43%), Gaps = 28/381 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
               IDL A+ +N   +   +G A   AVVK +AY  G   +A A   AG  +  VT++ 
Sbjct: 38  AEAVIDLDAVAHNIGILREHAGGATVMAVVKADAYNHGAVPVARAALAAGAGELGVTTLA 97

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYA 125
           EG++L+     A +                  +   +SS        +     G +    
Sbjct: 98  EGLELKNAGITAPVLSWLHTADSDFAPAVAAGVELGLSSPRHLAAVAAAARQVGTAATVT 157

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++VDTG NR G+S +E  DF  +      +   +   + SHLA AD+P   V   Q ERF
Sbjct: 158 VKVDTGLNRNGVSREEWTDFLKDLARVEAEGAVRFKGVFSHLAHADEPHHPVIDDQRERF 217

Query: 183 RTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVV 236
            + +   + I      A L++S+  L  P+  F + RPGI++YG +   +  +  ++ V+
Sbjct: 218 TSALEDAERIGLVPEAAHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPDLGTFGLRPVM 277

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  +R+ L++K  AGE VSYG       D+ +A+  +GYADG P  L G           
Sbjct: 278 TFRSRVALVKKVAAGEGVSYGHTWVAPHDTTVALLPVGYADGIPRALGGRF--------- 328

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPD------IKLDDVALA 349
             + ++     P +G++ MD  + D+  D   +  GD    FG            D A A
Sbjct: 329 --EVWLGDDRRPGIGRVCMDQVVVDLGPDGAGVREGDTAVFFGDGDGDRGVPHAQDWADA 386

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
             T +Y+++  +  R  + Y 
Sbjct: 387 LDTIHYEVVTSVRGRTIRTYV 407


>gi|254419455|ref|ZP_05033179.1| alanine racemase [Brevundimonas sp. BAL3]
 gi|196185632|gb|EDX80608.1| alanine racemase [Brevundimonas sp. BAL3]
          Length = 346

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 121/363 (33%), Positives = 179/363 (49%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL  N+H++ A++G      VVK +AYGLG E  A  L   G + FFV    EG
Sbjct: 7   LSVDLNALARNFHTLEAVTG-VPVHPVVKADAYGLGAEACAKRLMAEGARTFFVARAGEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR    P+  ++VL G H     ++   +L PV++   Q+  +++           LQ
Sbjct: 66  AALRTALGPEPVLYVLDGCHGEAAGLLKAADLRPVLNQPAQMKAWAEAGGGA----CGLQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG   ++A +            LSL++SHLAC D+P   +N  Q +RF  ++ 
Sbjct: 122 IDTGLNRLGFRPEDAPEV--------FDGLSLVMSHLACGDEPDQPMNRRQRDRFAGMVE 173

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            Y G+  S A+S G  LGP++ F   RPG+ LYGG  +      +  V    A ++L+R 
Sbjct: 174 RYPGVTRSFANSGGCFLGPDFAFDAVRPGVCLYGGGPEGRPDERIAPVAALTAEVLLVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y       R    AV A GYADG                   G  ++ G   
Sbjct: 234 VRTGESVGYSRGFVAERPMRAAVVAAGYADGVLRAYGPR-----------GAVWVAGETR 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P+LG+I+MD+   D+T  L + VGD +++FG    +D  A A+GT +Y+LL  +  R  +
Sbjct: 283 PLLGRISMDVCTVDVTG-LEVAVGDRVELFGAHRPIDAAAAAAGTISYELLTAVTVRVPR 341

Query: 368 FYT 370
            Y 
Sbjct: 342 AYV 344


>gi|313817562|gb|EFS55276.1| alanine racemase [Propionibacterium acnes HL046PA2]
          Length = 375

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 24/375 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
             IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V  V E
Sbjct: 10  AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVAPVAE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           G +L        I       P        + +   +     L   SK     G++    +
Sbjct: 70  GQELVEAGIPLPILNPPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185
            VD+G  R+GL  +   + T  +   K  ++  + +HL  +D P        +++ F T 
Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239
           +S             LA+S  IL        + R GI  YG     +     +   ++  
Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +  ++    G+ + YG     +  + IA   +GYADG    LS             G 
Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I+G + PI+G+I MD  M D+    ++ VGD + + G      +  DD+A   GT +Y
Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358

Query: 356 DLLVRIGTRYAKFYT 370
           ++   I  R  +++ 
Sbjct: 359 EITCAISKRVDRYWV 373


>gi|327399718|ref|YP_004340587.1| Alanine racemase [Hippea maritima DSM 10411]
 gi|327182347|gb|AEA34528.1| Alanine racemase [Hippea maritima DSM 10411]
          Length = 373

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 160/376 (42%), Gaps = 30/376 (7%)

Query: 11  IDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPAL-YNAGVQDFFVTSVEEG 68
           + L  L  N+  ++   G +     V+K +AYG G  +IA  L     V    +  ++EG
Sbjct: 9   VHLDNLHYNFGQISQFVGKSVNIIPVIKADAYGHGIVRIAKELSIYPNVAYLGIAHIKEG 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYALQ 127
             LR    +  I  +  +       + + ++ PV  ++  L                 L+
Sbjct: 69  AMLRKRGVKKPILAMSCLDSFDINTMHEFSITPVAHNITLLERLIDYAKLNNTRIKLHLK 128

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            DTG  RLG+  +E          N K  ++  ++SH + + +  +     QL RF+ +I
Sbjct: 129 FDTGMARLGIREEETQKTIELCKQNDKYIEIDGLMSHFSDS-ESDAQWTKKQLNRFKNII 187

Query: 187 SHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVTAE 239
             +   GI      +A+S  IL   + H    RPG+++YG    +N  K   ++ V+  +
Sbjct: 188 KMFYDSGIYPRLTHIANSGAILSFKDTHLNCVRPGLAMYGYAPAVNLKKIIDLKPVLEIQ 247

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +++I I     GE +SY       +D  + V A GYADG P ++S               
Sbjct: 248 SQLINIHVLKKGEGISYSRTFVADKDMKVGVVAFGYADGLPRSISNKF-----------Y 296

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
             + G     +G + MDM M D+TD    +V D + I G      I  D++A  +GT +Y
Sbjct: 297 CIVNGQRSKSIGTVCMDMFMCDLTDI-EAKVSDDVIIMGQKNGISITADELAQKAGTISY 355

Query: 356 DLLVRIGT--RYAKFY 369
           ++L  IG   R  + Y
Sbjct: 356 EILTNIGKSIRVKRVY 371


>gi|124268746|ref|YP_001022750.1| alanine racemase [Methylibium petroleiphilum PM1]
 gi|166969417|sp|A2SLS6|ALR_METPP RecName: Full=Alanine racemase
 gi|124261521|gb|ABM96515.1| Alanine racemase [Methylibium petroleiphilum PM1]
          Length = 367

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 143/375 (38%), Gaps = 30/375 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   AL +N     A   +AR  AVVK +AYG G  ++  AL       F +  
Sbjct: 3   RPIEALIHAEALTHNLARARAAVPDARVWAVVKAHAYGHGIARVFEALRA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  +LR    +  I +L G+  P   ++    NL   +    Q+ +   +      H 
Sbjct: 61  LAEAQQLRDLGWRGPILLLEGVFEPRDLELCSRLNLWHTVHCEAQIDWL-AMHKTHQPHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG                       ++SH + AD       ++Q+  F 
Sbjct: 120 VFLKMNSGMNRLGFRPAAFRAAWTRLHALPQVDEISLMSHFSDADGGRGIAAAMQV--FD 177

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
                  G E SL +S+  L             R GI LYG              +Q  +
Sbjct: 178 DATRDLPG-ERSLCNSAATLRHGADAAVRADWVRAGIMLYGSAPDFPSHDIAHWDLQPTM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  AR+I  +   AG+ V YG +        I V A GYADGYP                
Sbjct: 237 TLRARLIGTQDLQAGDTVGYGSRFTAEAPMRIGVVACGYADGYPRHA-----------PS 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    + G    ++G+++MDM   D+        G  + ++G       + +D+VA A+G
Sbjct: 286 GTPVLVDGVRTRLVGRVSMDMVTVDLGGLPQAARGSEVTLWGRASSGAVLPIDEVAHAAG 345

Query: 352 TTNYDLLVRIGTRYA 366
           T  Y+ +  +  R  
Sbjct: 346 TVGYEPMCALAARVP 360


>gi|163732015|ref|ZP_02139461.1| alanine racemase [Roseobacter litoralis Och 149]
 gi|161394313|gb|EDQ18636.1| alanine racemase [Roseobacter litoralis Och 149]
          Length = 344

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 182/363 (50%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+AL  NW ++NA S ++ TAAVVK NAYGLG    A  L  AG + FFV   EEG
Sbjct: 6   LTIDLSALAANWRNLNARS-DSETAAVVKANAYGLGLRTAASVLAQAGARHFFVAVAEEG 64

Query: 69  VKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR        I V  G   G   +I D  L P+I+S+ Q     + +     H + +Q
Sbjct: 65  AALREVLGTGPQISVFSGHMEGDTPLIRDAGLTPMINSIDQ---LIRHVEALPDHDFGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+   E       +  +     SL++SHLACAD+PS  +N  QL+ F  +  
Sbjct: 122 LDTGMNRLGMEDAEWRSVREVATQRP---PSLVMSHLACADEPSHQMNRQQLDCFIEMTH 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
                  SLA++ G+L+G +YHF LTRPGI LYGG   ++       VV  +  +I +R 
Sbjct: 179 DISA-PRSLAATGGLLMGSDYHFDLTRPGIGLYGGLPFVDA----LPVVQLDVPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y         + IA  + GYADG    +    + H+  V            V
Sbjct: 234 VHPGETVGYANTWTAAAPARIATISAGYADGLIRAMGAKANLHAGDVA-----------V 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+++MD+   D+T   +      +Q+ G    +D VA  + T  Y++L  +G RY +
Sbjct: 283 PVVGRVSMDLIGVDVTALSADPE--SLQLIGRHQSVDTVADFADTIGYEILTSLGERYKR 340

Query: 368 FYT 370
            YT
Sbjct: 341 VYT 343


>gi|302344277|ref|YP_003808806.1| alanine racemase [Desulfarculus baarsii DSM 2075]
 gi|301640890|gb|ADK86212.1| alanine racemase [Desulfarculus baarsii DSM 2075]
          Length = 381

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 169/382 (44%), Gaps = 28/382 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            + +L IDL A+ +N  ++  +     R A  VK + YG G   +A  L  AG +   V 
Sbjct: 8   PYNKLTIDLEAIAHNLRALRTIMPKGLRVAGTVKSDGYGHGMVAVARKLKEAGAEFLAVA 67

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122
              EG  LR      +I +L G+HP +        L PV+  +  +   S + +  G+  
Sbjct: 68  HAAEGAVLRREGLAGQILLLLGLHPSEMTQAARLRLTPVLFDLETMAALSDVATGLGLRA 127

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+VDTG  RLG+  ++AL+    +   +  ++  + SHLA        +   Q   F
Sbjct: 128 QCHLKVDTGMGRLGVRPEDALELLRAARALRGLEVRGLTSHLATGGSADRAMADEQAAVF 187

Query: 183 RTLISHYKG-----IEASLASSSGIL---LGPNYHFQLTRPGISLYGGTDKINKSH--PM 232
             L++  +       ++SL +S G +           + R GI+LYGG      +    +
Sbjct: 188 GQLLAAARAEGFDLPDSSLCNSGGAMDPPAAAPGPPHVVRLGIALYGGLPDPAMAGRLDL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +   +++I +R A  G+ VSYG   +   D+ + V  +GY DGYP   S        
Sbjct: 248 RGAMGLASQLIAVRPARRGQPVSYGCTWRADCDTWLGVVPLGYGDGYPRAASN------- 300

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFG----PDIKLDDVA 347
                G   + G   PI+G++ M++T+ D+       +VGD +   G     +I  D++A
Sbjct: 301 ----NGFMLVHGQRAPIVGRVCMNLTVLDLGGFDPLPQVGDEVVALGGQGADEITCDELA 356

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T +Y+++ R+G    + +
Sbjct: 357 SWCQTISYEIVCRLGAANPRIH 378


>gi|86749577|ref|YP_486073.1| alanine racemase [Rhodopseudomonas palustris HaA2]
 gi|86572605|gb|ABD07162.1| alanine racemase [Rhodopseudomonas palustris HaA2]
          Length = 423

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 182/364 (50%), Gaps = 10/364 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW  +   +  A  AAVVK +AYG G   +  AL  AG + FFV ++ E 
Sbjct: 46  LTIDLDAIVANWRKLEKTAVPAEAAAVVKGDAYGCGIAPVTKALVAAGCKTFFVATLAEA 105

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
             +R   P A I+VL G            N  PVI  + +L  +         S   A+ 
Sbjct: 106 AAVRATAPDAAIYVLDGFFQSTGDEFARLNCRPVIGDLYELAEWDVYCRRTQWSGGAAIH 165

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL++ EA            G ++L+ISHLA A+  +  +N+ Q+  FR + S
Sbjct: 166 IDTGMNRLGLTISEAQGIVPRIATGDHG-ITLVISHLAAAEALNHPMNARQVTAFREIAS 224

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            + G+ ASL++SSGI L P + F + RPG +LYG        +PMQ VV  +ARI+ +R 
Sbjct: 225 LFTGVPASLSASSGIFLDPQFAFDMVRPGAALYGINPTPEADNPMQPVVDLKARILQVRS 284

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G+ V YGG     R + IAV + GYADGY       D         G    I G   
Sbjct: 285 VERGDSVGYGGTWTARRPTKIAVLSAGYADGYFRAAGSNDGTR------GADVIIAGQRC 338

Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P+ G+I+MD+   D+TD    +   G    + G  I +D++    G+  Y++L  +G RY
Sbjct: 339 PVAGRISMDLLAVDVTDLPANAARRGQMATLIGDGITVDELGHHFGSIGYEVLTSLGRRY 398

Query: 366 AKFY 369
           A+ Y
Sbjct: 399 ARVY 402


>gi|16762331|ref|NP_457948.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143819|ref|NP_807161.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213052147|ref|ZP_03345025.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213427047|ref|ZP_03359797.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289830029|ref|ZP_06547478.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|20137366|sp|Q8Z300|ALR3_SALTI RecName: Full=Alanine racemase 3
 gi|25291653|pir||AD0937 alanine racemase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504635|emb|CAD09518.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139455|gb|AAO71021.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 368

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 108/362 (29%), Positives = 170/362 (46%), Gaps = 15/362 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           V LR      A + +L G+ P          + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 193

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+G   +   S P++   T    I+ ++
Sbjct: 194 KAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLTILRVQ 252

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L                   +G  
Sbjct: 253 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNLRPPAG-----------VCWRGVR 301

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 302 LPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFR 360

Query: 367 KF 368
           + 
Sbjct: 361 RI 362


>gi|302869894|ref|YP_003838531.1| alanine racemase [Micromonospora aurantiaca ATCC 27029]
 gi|302572753|gb|ADL48955.1| alanine racemase [Micromonospora aurantiaca ATCC 27029]
          Length = 372

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 29/376 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++DL A++ N   + A +  A   AVVK + YG G    A A  +AG     V ++ E 
Sbjct: 6   VRVDLDAIRENVTRLKAGTS-AELMAVVKGDGYGHGMVPAARAALDAGADQLGVCTLAEA 64

Query: 69  VKLRLYTPQARIF--VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           ++LR     A +   +L    P  + I    +L     +                    L
Sbjct: 65  LRLREEGITAPVLAWLLSPGLPLHDGITVGVDLGCAGLT-QLDEMIQASRRADRPARLHL 123

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183
           ++DTG  R G ++ +       +   +   L ++  + SH   AD P       QL  F+
Sbjct: 124 KIDTGLARGGATVADWPALLEAAAKAQADGLVEVVGVWSHFVYADSPGHPTTDRQLAVFQ 183

Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
             +     +  +     LA+S+  L  P+ HF L RPGI++YG +    +   ++  +TA
Sbjct: 184 EGLEMVTRAGLRPRYRHLANSAATLTRPDTHFDLVRPGIAVYGLSPVAGEQFGLRPAMTA 243

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            AR++L ++  AG  VSYG      +++ +AV  +GYADG P   S             G
Sbjct: 244 RARVMLTKRVAAGTGVSYGHTYLTEQEANLAVVPLGYADGVPRHASNT-----------G 292

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354
              + G    I G++ MD  + D  D   +  GD   +FG     +   DD A A GT N
Sbjct: 293 PVQLAGKRRTISGRVCMDQFVVDCGDD-EVTDGDVATLFGSGADGEPTADDWAEAVGTIN 351

Query: 355 YDLLVRIGT-RYAKFY 369
           Y+++ R G  R  + Y
Sbjct: 352 YEIVTRFGGVRVPRVY 367


>gi|114799438|ref|YP_761112.1| alanine racemase [Hyphomonas neptunium ATCC 15444]
 gi|114739612|gb|ABI77737.1| alanine racemase [Hyphomonas neptunium ATCC 15444]
          Length = 396

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 187/380 (49%), Gaps = 33/380 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNA---------YGLGCEKIAPALY 53
           ++E  RL ID+ A+  N+  + A+   AR                  YGL   +IAP L 
Sbjct: 24  TDEAGRLTIDMGAIAANYRRLRAMHPAAR---------VAAVVKADAYGLDATQIAPMLA 74

Query: 54  NAGVQDFFVTSVEEGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112
             G +DFFV  + E + L+ L  P A +FVL G+ PG E +  +  ++PV+++  Q   +
Sbjct: 75  GQGARDFFVAHLAEALVLKPLLPPDAVLFVLNGLAPGSEPLCAEAGILPVLNTPEQARAW 134

Query: 113 SKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
             L  +     P ALQVDTG +RLGLS  E  D            + L+++H+ACAD P 
Sbjct: 135 YTLAVNKAHPVPAALQVDTGMSRLGLSEGELNDVLGWPSFAGQVNICLLMTHMACADTPG 194

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
           +  N+ Q+ RF    +    +  SLA+S+  +  P     + RPG+ LYG          
Sbjct: 195 APANADQMRRFADFAARLPSVPRSLANSAAAMFLPEAAGDVLRPGLVLYGVDPGAGGVPK 254

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           MQ  +  EARII +R   AG  V YG      R   +A  + GYADG+P  LS       
Sbjct: 255 MQPAIALEARIIQLRHIPAGAGVGYGFDYIADRPLRVATLSAGYADGWPRALSN------ 308

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALA 349
                GG  +  G+ +PILG+++MD  M D+T+     I  GD +++ GP   ++D+A  
Sbjct: 309 -----GGATWFAGHRLPILGRVSMDSCMVDVTNLPEGSIRPGDCVELIGPHQSVNDLARQ 363

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             TT +++L  +G R+ + Y
Sbjct: 364 LATTPHEILTSLGRRFTRSY 383


>gi|222151977|ref|YP_002561137.1| alanine racemase homolog [Macrococcus caseolyticus JCSC5402]
 gi|254802369|sp|B9E8C3|ALR_MACCJ RecName: Full=Alanine racemase
 gi|222121106|dbj|BAH18441.1| alanine racemase homolog [Macrococcus caseolyticus JCSC5402]
          Length = 380

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 159/380 (41%), Gaps = 28/380 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+ + R   + ++L A+ +N+  +  L  N    AV+K N YGLG   IA  L  +G   
Sbjct: 2   SDRYYRPTFVNVNLDAISSNFKHIEKLHPNKTVIAVIKANGYGLGSVNIAKHLMTSGTDF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
           F V +++E ++LR++  +A+I VL  + P   +      L         +   S+ +   
Sbjct: 62  FAVATLDEAIELRMHGIKAKILVLGVVDPKHIRQASRHRLALTAPDAKWVEDASRYIEAE 121

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                  ++VD+G  R+G+  ++A D         +      + +H + AD+  + +   
Sbjct: 122 DKPVWLHIKVDSGMGRIGVQTKQAYDMVVDKVAAVEQFIFEGVFTHFSSADE-DNALTER 180

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQ 233
             ++F  +I+  K       +S+  L          R GISLYG           +  +Q
Sbjct: 181 AYDKFLGIINDNKPQYIHCQNSAATLRYDCSECNAVRLGISLYGYYPSEFIRAVSNVKLQ 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             V   +    I+   +G+ VSYG       D ++A   IGYADG P  + G +      
Sbjct: 241 PAVQLVSTACFIKHIKSGDTVSYGATYTAQSDEVVATFPIGYADGLPRAMQGYNIN---- 296

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                   ++G  VPI+G++ MD  M  + D     +G    I       +  L+ VA  
Sbjct: 297 --------LEGTEVPIIGRVCMDQMMARVPD--DTLLGAQCIIIDNNADSNQSLERVAQQ 346

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT  Y++L  +  R  K Y
Sbjct: 347 LGTITYEVLTSLSRRLPKRY 366


>gi|222109415|ref|YP_002551679.1| alanine racemase [Acidovorax ebreus TPSY]
 gi|254802363|sp|B9MAN2|ALR_DIAST RecName: Full=Alanine racemase
 gi|221728859|gb|ACM31679.1| alanine racemase [Acidovorax ebreus TPSY]
          Length = 365

 Score =  330 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 152/375 (40%), Gaps = 30/375 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+ +N       + +AR  AVVK NAYG G E++   L       F +  
Sbjct: 3   RPILATIHPAAVHHNLERARRAAPDARVWAVVKANAYGHGIERVFEGLRA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R    +  I +L G+  P   ++     L   +    Q+ + +      V H 
Sbjct: 61  LAEAERVRALGWRGPILLLEGVFEPRDLELCSRLGLWHAVHCDAQIDWLAAH-KTQVPHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + +                    ++H + AD P     + Q++ F+
Sbjct: 120 VFLKMNSGMNRLGFTPERYRSAWARLNALPQVDEISCMTHFSDADGPRGI--AHQVQAFQ 177

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINK----SHPMQTVV 236
           T      G E  +A+S+ +L             R GI LYG      +       +Q  +
Sbjct: 178 TATRDLPG-ERCIANSAALLRHGGDAQVRLDWVRAGIVLYGSAPDHPERRAADWDLQPTM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  +RII +++  AG+ V YG +        I V A GYADGYP                
Sbjct: 237 TLASRIIGVQQLQAGDTVGYGSRFTAQGPLGIGVVACGYADGYPRH-----------CDT 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    + G     +G+++MDM   D+T      +G  + ++G       + +D+VA A G
Sbjct: 286 GTPVLVNGVRTRTIGRVSMDMLAVDLTPVPGAGLGAEVTLWGRAANGAVLPIDEVAQAGG 345

Query: 352 TTNYDLLVRIGTRYA 366
           T  Y+L+  +  R  
Sbjct: 346 TIGYELMCALAPRVP 360


>gi|85059320|ref|YP_455022.1| alanine racemase [Sodalis glossinidius str. 'morsitans']
 gi|123519392|sp|Q2NTA8|ALR_SODGM RecName: Full=Alanine racemase
 gi|84779840|dbj|BAE74617.1| alanine racemase [Sodalis glossinidius str. 'morsitans']
          Length = 356

 Score =  330 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 96/366 (26%), Positives = 157/366 (42%), Gaps = 22/366 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  K+D   L +N   +   +  A+  +VVK N YG G   +   L       F +  
Sbjct: 3   RPIVAKVDSAVLASNLSIVRRHAPQAQVWSVVKANGYGHGLNTVWQGLQQ--TDGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E V LR    +  I +L G   P    +I    L  V+ S  Q+    + M+      
Sbjct: 61  LHEAVVLREKGWRGPILLLEGFFQPADLAVIDRYRLTTVVHSDWQIEALRR-MTPRAPLD 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG S +       +    K      ++SH A AD P       Q+    
Sbjct: 120 IYLKLNSGMNRLGFSERALPGAWQSLNALKHVATLTLMSHFAYADMPEG--VEGQMAVVA 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
                  G    LA+S+  L  P  H Q  RPGI LYG +   N     +  ++ V+T +
Sbjct: 178 RAGEGLTG-PRCLANSAATLWHPATHGQWVRPGIILYGASPSGNWQDIAASGLRPVMTLQ 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + +I ++   AG  + YGG+ +++    + V A GYADGYP                G  
Sbjct: 237 SELIAVQSVPAGGRIGYGGRHRVSETHRVGVVACGYADGYPRHA-----------PTGTP 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             + G     LG ++MDM M D+       +G  ++++G  +K+D+VA ++GT  Y+L+ 
Sbjct: 286 ILVDGVRTSTLGAVSMDMLMVDLQLCPKARIGSAVELWGDHVKIDEVAASAGTLGYELMS 345

Query: 360 RIGTRY 365
            +  R 
Sbjct: 346 ALAPRV 351


>gi|160903082|ref|YP_001568663.1| alanine racemase [Petrotoga mobilis SJ95]
 gi|160360726|gb|ABX32340.1| alanine racemase [Petrotoga mobilis SJ95]
          Length = 374

 Score =  330 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 158/372 (42%), Gaps = 28/372 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I++     N + +   +  A    V+K NAYG G   +A  ++  G     V  +EE ++
Sbjct: 10  INIDKYLENLNYIQNQT-KAHIIPVLKANAYGHGMLPLAMQVFKEGYSMLAVAYLEEALE 68

Query: 71  LRLYTPQARIFVLYGIHPGQEKII--FDTNLIPVI-SSVPQLTFYSKLMSCGVSHPYALQ 127
           +        I +     P   K +  F   L P I SS         L        + + 
Sbjct: 69  ILNRGIHLPILIFNYFSPDDFKELLEFAHFLRPTITSSTFLEKVCDILGKDVDKFKFHIN 128

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NR+G+  ++         ++   Q+  + SH A AD+       VQ E+++ L+ 
Sbjct: 129 VDTGINRIGIKEEKLPQLIKLIKDRN-IQIEGVYSHFANADEKDD-FTRVQFEKYKGLLD 186

Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAEAR 241
           +  G      +  +++S+  L  P +     RPGI+ YG            + ++  ++ 
Sbjct: 187 YIIGSGIDVEKKHISNSAAALFFPEFALDYVRPGIATYGLQPSTTYKIDQLKPILELKSI 246

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +  I+     + + YG   ++ +    A+  IGYADGY   LS             G+  
Sbjct: 247 VANIQNLQPNDTIGYGRTYEVQKRMKTAIVPIGYADGYFRALSN-----------KGEVL 295

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDL 357
           I G    ILG+++MD  + D+TD+ ++ +GD + I G      I  ++VA  + T NY++
Sbjct: 296 INGKRSKILGRVSMDQIVVDVTDN-NVSLGDEVVIIGRQKYDQITAEEVAENASTINYEV 354

Query: 358 LVRIGTRYAKFY 369
             RI  R  + Y
Sbjct: 355 TSRIAQRVRRIY 366


>gi|262038156|ref|ZP_06011553.1| alanine racemase [Leptotrichia goodfellowii F0264]
 gi|261747804|gb|EEY35246.1| alanine racemase [Leptotrichia goodfellowii F0264]
          Length = 363

 Score =  330 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 159/370 (42%), Gaps = 23/370 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             +I++  L +N   +  ++      AV+K + YG G EKI  AL   G+++F V + EE
Sbjct: 4   WAEINIKNLYDNIKEIEKITSKEHIMAVIKADGYGHGMEKICEALIKTGIKNFAVATSEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             K+R       I +L  I       + + N+  +I+   ++ +  K      +    ++
Sbjct: 64  AHKIREIDDSVNILILGPIENDHANSVSEKNIYFMITDFQEIDYLEK---NKCNTEVFIK 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG  R+G  LQE           K  +   + S    + D       +Q++RF  + +
Sbjct: 121 IDTGMGRVGFQLQEIEKLAETLKRCKYVKPIGVFS-HFSSSDSDVDYTDLQIKRFEEVSN 179

Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSHPMQTVVTAEAR 241
             K          L +S G L      +   R GI +YGG T++  K +  + V++  A+
Sbjct: 180 KLKKELPTVKYRHLLNSFGSLRFQKNKYDFIRAGIIIYGGVTEEETKPYKFKPVMSLYAK 239

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I  I+       +SYG      +   +A  +IGYADG    LS             G  +
Sbjct: 240 ISYIKTLSEDSYISYGNTYLGKKGETLATVSIGYADGVRRDLSN-----------KGYVY 288

Query: 302 IKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            KG+   I+G++ MD  +  + + L      GD ++ FG +I + DVA    T +Y++L 
Sbjct: 289 YKGHKCNIVGRVCMDQLVIKLPEKLAKEAAKGDKVEFFGENINVVDVANLCNTISYEILC 348

Query: 360 RIGTRYAKFY 369
            I  R  + Y
Sbjct: 349 GISQRVPRIY 358


>gi|313680417|ref|YP_004058156.1| alanine racemase [Oceanithermus profundus DSM 14977]
 gi|313153132|gb|ADR36983.1| alanine racemase [Oceanithermus profundus DSM 14977]
          Length = 358

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 95/372 (25%), Positives = 159/372 (42%), Gaps = 26/372 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVT 63
               L+IDL AL  N   +   + +A+  AVVK +AYG G  ++A  L    GV+ F V 
Sbjct: 2   RPTWLEIDLGALGRNCAHLAGRAPDAQLIAVVKADAYGHGAVRVARYLRERCGVRRFAVA 61

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +  EG +LR       + +L  +HP   +      L P + ++     ++     G    
Sbjct: 62  TSGEGAELRAAGIAEPVLLLGALHPDDAEGAARHGLTPTLVTLAAARAFAAARPGGR--- 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VD+G  R+G++  E   F        L ++  I +H A AD+        QL  F 
Sbjct: 119 VQVKVDSGMGRVGVAPAELAGFMAAVEGLGL-EVEAIYTHFAVADE-DEAETRRQLAVFL 176

Query: 184 TLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
                         A+S+ IL G        RPG++LYG    + ++  ++ V+  +AR 
Sbjct: 177 EAARALPRRYPLHAANSAAILAGLGTGLDFVRPGVALYGLPPDMKEAPGLEPVLAWKARP 236

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             +++  AG  V YG   +   +  IA    GYADG+   LS             G    
Sbjct: 237 TQVKRLPAGHGVGYGLSYRAGGEEWIATLPFGYADGFSRALSNR-----------GWVRW 285

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYI-QIFGPDIK----LDDVALASGTTNYDL 357
           +G   P+ G+++MD T   + + + +   D + ++  PD+     L   A A GT +Y+L
Sbjct: 286 RGGYAPVAGRVSMDQTTVRLPEPVGL---DEVFEVVTPDLDERTGLTGRARALGTIHYEL 342

Query: 358 LVRIGTRYAKFY 369
              +  R  + Y
Sbjct: 343 ATALSRRLPRIY 354


>gi|78189593|ref|YP_379931.1| alanine racemase region [Chlorobium chlorochromatii CaD3]
 gi|78171792|gb|ABB28888.1| alanine racemase [Chlorobium chlorochromatii CaD3]
          Length = 366

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 157/371 (42%), Gaps = 25/371 (6%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I L  L+ N  ++ A L+G A    +VK NAYG     +A  L   G+ +F V ++ E +
Sbjct: 6   ISLEHLRGNVRALQAHLNGRAHIMGIVKANAYGHNVHFVASTLETCGIHNFGVANIHEAL 65

Query: 70  KLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           +L+        A I       P       +  +   +           + +         
Sbjct: 66  ELKQGGALQKPATIIAFASPLPSHLPYFIEHGITMTLCDHATFVAARDIAAALERPLQVH 125

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +++D+G  RLG++  EA+            +L+ + +H A +  P+      QL  F+T+
Sbjct: 126 VKIDSGMGRLGVAPHEAMALLQAVDASPFLELTGVYTHFADSATPN-SFTHQQLAIFKTI 184

Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVVTA 238
            + Y+      I    A+S  +L        + RPGI LYG            +Q V+  
Sbjct: 185 AAEYEHAAQRTICKHTANSGALLSLQASWCDMVRPGILLYGYHPSQECPTQLNVQPVMQV 244

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +A+++ I+K  AG  +SY    +   +  IA  A GYADGY   LS              
Sbjct: 245 QAKVMFIKKVAAGTSISYNRTWQAPTERFIATIAAGYADGYHRLLSN-----------NA 293

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDL 357
              I G   P +G +TMD  M D+  S S++VGD   +FG D +  +++A  + T +Y++
Sbjct: 294 AVLINGKRYPQVGTVTMDQIMVDLGSSHSVQVGDSAVLFGWDTLSANELAAQAHTISYEM 353

Query: 358 LVRIGTRYAKF 368
           L  +  R  + 
Sbjct: 354 LCAVSARVKRR 364


>gi|300779772|ref|ZP_07089628.1| alanine racemase [Corynebacterium genitalium ATCC 33030]
 gi|300533882|gb|EFK54941.1| alanine racemase [Corynebacterium genitalium ATCC 33030]
          Length = 397

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 96/389 (24%), Positives = 157/389 (40%), Gaps = 43/389 (11%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               L IDL A+ +N   +   +G A+   VVK NAY  G E++ P +  AG   F V +
Sbjct: 24  SPATLHIDLDAIAHNTALLKRGAGAAKLMCVVKANAYNHGVERVVPVMDKAGADAFGVAT 83

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + E  +++  T    +               +          P LT    L+      P 
Sbjct: 84  LAEASQVKRLT-DKPVLAWMWAPGEPIPAGIEVG-------APTLTHLRTLIDVSPHTPV 135

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L +DTG NR G+  ++  D            +  ++SHLACAD+P +  N+ Q E F+ 
Sbjct: 136 HLMLDTGMNRSGIDEEDWAD-AFAIATNAGLTVRGVMSHLACADEPGNPFNTEQYESFQR 194

Query: 185 LISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------- 232
            I+  + +        LA+S G L      F+  R G++LYG      ++ P        
Sbjct: 195 GIALARSMGLDVPCNHLANSPGTLSRKELAFEQIRAGVALYGLDPVAPETGPEAAPGTAP 254

Query: 233 ---------QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                    +  +T  A I+ ++    GE  SYG       D   AV  +GYADG P   
Sbjct: 255 NTDFDRAQLRPAMTWSAEIVAVKLIGKGEGASYGLTWTAPEDGYTAVVPVGYADGLPRAW 314

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DI 341
                          +  + G   P +G+I MD  +  + D+   ++ GD   IFG   +
Sbjct: 315 QDAV-----------EVTVNGARYPQVGRICMDQFIVWLGDNPADVQPGDTAVIFGEGGM 363

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370
              ++A  +GT +Y+++     R  + Y+
Sbjct: 364 TAAELADRAGTIHYEVVCSPCGRVERQYS 392


>gi|254785046|ref|YP_003072474.1| alanine racemase [Teredinibacter turnerae T7901]
 gi|237683511|gb|ACR10775.1| alanine racemase [Teredinibacter turnerae T7901]
          Length = 382

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 126/381 (33%), Positives = 194/381 (50%), Gaps = 29/381 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L I+L+ +  NW ++N  +S      AVVK +AY LG  ++ PALY AG + F+V ++ E
Sbjct: 5   LTINLSKIAANWQALNRFVSAPVDCGAVVKADAYSLGMAEVLPALYLAGCRTFYVANLGE 64

Query: 68  GVKLRLYTP---------QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            +  R                I VL G  PG+E+   D  L+PV+ S   L  +  +   
Sbjct: 65  ALDAR--GILSDVCGSYSDVAIVVLGGCAPGEERRFIDYRLVPVLVSTAMLERWCTVN-- 120

Query: 119 GVSHPY---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           G  H      L+++TG  RLGL   E      +        + +++SHLACAD+P   +N
Sbjct: 121 GGEHNVLGSILKLNTGMGRLGLEPAEFERVVQDPAYLARADVRMLMSHLACADEPEHSLN 180

Query: 176 SVQLERFRTLIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SH 230
           + QL+RFR  +      Y+ + ASLA+S+G+ LG +YHF   RPG+ LY    + +    
Sbjct: 181 AEQLQRFRRALDVSSERYRPLTASLANSAGVCLGGDYHFNAVRPGLGLYTSFAQADACGL 240

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++T V     ++ +R   AGE V YG   +  RD+ +AV A GYADG    LS      
Sbjct: 241 GLETAVELHLPVVQVRNLPAGESVGYGATYRAERDARLAVVAGGYADGLFRALSNRAHCW 300

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVAL 348
             +    G     G+ VP++G+I+MD T+ DI+      +  G  I+  G  + LDD+A 
Sbjct: 301 VCAPSGAG-----GWRVPVVGRISMDTTIVDISAVPEGVVAEGSRIEFIGEHVPLDDLAA 355

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           ++ T NY++L  +G RY + Y
Sbjct: 356 SAQTINYEILTSLGVRYKRHY 376


>gi|158317753|ref|YP_001510261.1| alanine racemase [Frankia sp. EAN1pec]
 gi|158113158|gb|ABW15355.1| alanine racemase [Frankia sp. EAN1pec]
          Length = 380

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 88/352 (25%), Positives = 146/352 (41%), Gaps = 29/352 (8%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           VVK + YG G    A A  +AG        +EE + LR       +         +    
Sbjct: 40  VVKADGYGHGMLPCARAALDAGASWLGTAFLEEALALRAAGITVPVLSWLAAPGERLAAG 99

Query: 95  FDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF---THNSF 150
              ++    S+        +   + G +    L++DTG  R G + ++            
Sbjct: 100 IAADVDLSASAGWALDDLAAAARTAGRAARVHLKIDTGLGRAGATGEDWPGLCDSAAALE 159

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASLASSSGILLG 205
              L ++  + SH A AD P       Q+ RF   +     +  +     LA+S+  L+ 
Sbjct: 160 ADGLIEVVGVWSHFAFADAPGHPTVQAQISRFGDAVDVARKAGLRPQVRHLANSAATLVS 219

Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKK 261
           P  HF + RPG+S+YG +       P     +  +T  A I L+++  AG  VSY  + +
Sbjct: 220 PEAHFDMVRPGVSVYGLSPGPEVGPPSAFGLRPAMTLRASIALVKRVPAGTGVSYAHRYR 279

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
            + ++ +AV  +GYADG P + +              +  + G    I G + MD  + D
Sbjct: 280 TSAETGLAVVPLGYADGIPRSATNT-----------AEVLVGGRRRRIAGTVCMDQFVMD 328

Query: 322 ITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +     + VGD + +FGP    +   DD A A GT NY+++ RIG R  + Y
Sbjct: 329 VGADP-VRVGDEVILFGPGDRGEPTADDWARALGTINYEIVTRIGPRVPRVY 379


>gi|319941566|ref|ZP_08015892.1| alanine racemase [Sutterella wadsworthensis 3_1_45B]
 gi|319804936|gb|EFW01778.1| alanine racemase [Sutterella wadsworthensis 3_1_45B]
          Length = 370

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 95/366 (25%), Positives = 157/366 (42%), Gaps = 20/366 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +  +IDL AL++N   M + +      AVVK NAYG G +    A   A         
Sbjct: 16  RPISAEIDLEALRHNLGVMRSKAAGRALWAVVKANAYGHGLDNAVTAF--ADADGLATID 73

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + +   +R      RI +L G       + +    +  V+ S  Q+              
Sbjct: 74  LCDAEIVRRCGWHKRILLLEGFFDAADIEPLQTLKVETVVHSPWQIAILRAAKP--KDVR 131

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++V++G NRLG    EA             ++   ++H A A+  + H   V ++   
Sbjct: 132 VHVKVNSGMNRLGFRPSEAPAAAAQLAAIPGVRVMDYVTHFANAEQSAVHA-PVTVDDQL 190

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
             +      +A LA++  IL  P    Q  R G++LYG +       ++  +   +T  A
Sbjct: 191 AAMGGLAREQACLANTGAILFHPEVQGQAVRAGVALYGVSPDEAVTSEALSLIPAMTLGA 250

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II +++   GE V YG +    R S IAV A GYADGYP ++             G   
Sbjct: 251 EIIALQQVRPGESVGYGSRWTAQRPSRIAVVACGYADGYPRSM-----------PDGAPV 299

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           +++G   P+ G ++MDM   D+TD    +VG  ++++G  I ++D+A   GT  Y+LL  
Sbjct: 300 WVEGSQAPLAGAVSMDMLTIDVTDIPEADVGSKVELWGRHIAVNDLARRCGTIGYELLCA 359

Query: 361 IGTRYA 366
           +  R  
Sbjct: 360 LARRVP 365


>gi|121592611|ref|YP_984507.1| alanine racemase [Acidovorax sp. JS42]
 gi|166919544|sp|A1W2F6|ALR_ACISJ RecName: Full=Alanine racemase
 gi|120604691|gb|ABM40431.1| alanine racemase [Acidovorax sp. JS42]
          Length = 365

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 151/375 (40%), Gaps = 30/375 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+ +N       + +AR  AVVK NAYG G E++   L       F +  
Sbjct: 3   RPILATIHPAAVHHNLERARRAAPDARVWAVVKANAYGHGIERVFEGLRA--ADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R    +  I +L G+  P   ++     L   +    Q+ + +      V H 
Sbjct: 61  LAEAERVRALGWRGPILLLEGVFEPRDLELCSRLGLWHAVHCDAQIDWLAAH-KTQVPHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + +                    ++H + AD P     + Q++ F+
Sbjct: 120 VFLKMNSGMNRLGFTPERYRSAWARLNALPQVDEISCMTHFSDADGPRGI--AHQVQAFQ 177

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINK----SHPMQTVV 236
                  G E  +A+S+ +L             R GI LYG      +       +Q  +
Sbjct: 178 AATQDLPG-ERCIANSAALLRHGGDAQVRLDWVRAGIVLYGSAPDHPERRAADWDLQPTM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  +RII +++  AG+ V YG +        I + A GYADGYP                
Sbjct: 237 TLASRIIGVQQLQAGDTVGYGSRFTAQGPLGIGIVACGYADGYPRH-----------CDT 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    + G     +G+++MDM   D+T      +G  + ++G       + +D+VA A G
Sbjct: 286 GTPVLVNGVRTRTIGRVSMDMLAVDLTPVPGAGLGAEVTLWGRAANGAVLPIDEVAQAGG 345

Query: 352 TTNYDLLVRIGTRYA 366
           T  Y+L+  +  R  
Sbjct: 346 TIGYELMCALAPRVP 360


>gi|206603563|gb|EDZ40043.1| Alanine racemase [Leptospirillum sp. Group II '5-way CG']
          Length = 406

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 102/392 (26%), Positives = 164/392 (41%), Gaps = 40/392 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              RL +DL AL NN   + +   ++     VVK +AYG G   +A      GV    V 
Sbjct: 19  SRSRLIVDLDALSNNLEWIRSRLPSSIEILPVVKADAYGHGMLPVAKNFVEMGVPALGVM 78

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            +EEGV+LR     A++ V+ GI P + +      L PVI +   L     L      H 
Sbjct: 79  GLEEGVRLRKAEISAKVIVMGGILPSELEECISCGLTPVIHNCELLEAALDLARKMEVH- 137

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+ D G  RLG   ++          +   ++  ++SH    ++ S    S Q+  F 
Sbjct: 138 IHLKFDVGMGRLGFLPEDISWVCDKIEMEPSIRIEGVMSHFPEGENISE--TSRQIAIFG 195

Query: 184 TLISHY--------KGIEASLASSSGILLGPNYHFQ------------LTRPGISLYGGT 223
            ++           +     LA+S+  L G                    RPGI LYG  
Sbjct: 196 CMVDELWDRGVLYARPFVIHLANSAAFLSGQYSVADKKNRAWEKYARYWIRPGILLYGIP 255

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                   ++  +  +AR+I ++    G  +SYGG   L+R + + V  +GYADG P  L
Sbjct: 256 VDPLPLPGLKPAMEIQARLISLKTLSEGSRISYGGTFSLSRKTRVGVLGMGYADGLPREL 315

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-- 340
           S             G     G   P LG++ MDM M D+TD+   + +GD++ + G    
Sbjct: 316 SNW-----------GWASRMGQKFPFLGRVCMDMVMVDVTDAESPVCLGDWMTVLGNGDD 364

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
             +   ++A    +  Y+++ R+G R  +FY+
Sbjct: 365 LSMSAWEIAGRIRSIPYEIVCRMGNRSPRFYS 396


>gi|89054230|ref|YP_509681.1| alanine racemase [Jannaschia sp. CCS1]
 gi|122498888|sp|Q28RK6|ALR_JANSC RecName: Full=Alanine racemase
 gi|88863779|gb|ABD54656.1| alanine racemase [Jannaschia sp. CCS1]
          Length = 342

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 124/361 (34%), Positives = 178/361 (49%), Gaps = 30/361 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL  N+ +++ L   A TAAVVK + YGLG   ++  L  AG   FFV + EEG
Sbjct: 6   LTVDLGALVANYRTLDRLGPGA-TAAVVKADGYGLGAGLVSTGLAKAGACQFFVATAEEG 64

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR    P   I V  G   G   +I D +L P+++S  Q+  +  ++     HPY +Q
Sbjct: 65  VGLRQVLGPAPEINVFAGHMAGDTPLIRDAHLTPMLNSPKQVQRHRHVL---PGHPYGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +RLG+   +         +      +L++SHLACAD P    N+ QL +FR L  
Sbjct: 122 LDTGMHRLGVQPADWPALRDQLHDA-----TLLMSHLACADAPDHPQNAAQLAQFRALTD 176

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             +    SLA++ G L+GP+YHF L RPG+ LYGG          + VV     +I IR 
Sbjct: 177 GIQT-PRSLAATGGTLMGPDYHFDLIRPGVGLYGGLPFAGA----RPVVRLSLPVIQIRC 231

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              G  + YG     T    IA  + GYADG    LS                +      
Sbjct: 232 VNPGATIGYGATYTATTPRQIATLSAGYADGLIRALS-----------SKATLWDGDTPC 280

Query: 308 PILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           P++G+++MD+   D+TD     E  D   I GP   +D +A A+GT  Y++L  +G RY 
Sbjct: 281 PLVGRVSMDLLTVDVTDCDTPPEALD---ILGPHQTIDQLAEAAGTIGYEILTSLGPRYR 337

Query: 367 K 367
           +
Sbjct: 338 R 338


>gi|213583064|ref|ZP_03364890.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 362

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 108/362 (29%), Positives = 170/362 (46%), Gaps = 15/362 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLAHHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           V LR      A + +L G+ P          + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 193

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+G   +   S P++   T    I+ ++
Sbjct: 194 KAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLTILRVQ 252

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L                   +G  
Sbjct: 253 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNLRPPAG-----------VCWRGVR 301

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 302 LPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFR 360

Query: 367 KF 368
           + 
Sbjct: 361 RI 362


>gi|332669569|ref|YP_004452577.1| alanine racemase [Cellulomonas fimi ATCC 484]
 gi|332338607|gb|AEE45190.1| alanine racemase [Cellulomonas fimi ATCC 484]
          Length = 421

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 92/384 (23%), Positives = 161/384 (41%), Gaps = 26/384 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R  +DL A++ N  S+ A + +A+  AVVK +AYG G    A A    G        V
Sbjct: 28  PARAVVDLAAIRGNVRSLAAHAPSAQVMAVVKADAYGHGLVPSARAAVEGGATWLGAAQV 87

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKI---IFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            E ++LR         VL  ++     +   +     + V ++       +       + 
Sbjct: 88  AEALELRRAGVVGPR-VLTWLYAPGAPLADAVAAVVDVSVAAAWALDEVVAAARVAHRTA 146

Query: 123 PYALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L+VDTG  R GL+  +          +  +   ++  + SHLA AD+P+      Q 
Sbjct: 147 RVHLKVDTGLGRNGLTPGDLAALLPAVLRAQAEGAVEVVGVWSHLAFADEPAHPTVRAQA 206

Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ- 233
             F   +     +  +     LA+S+  L  P+ H  L RPGI++YG +       P   
Sbjct: 207 GVFADAVRTVEQAGLRPEVRHLANSAATLTDPSVHHDLVRPGIAVYGLSPVPQVGGPADF 266

Query: 234 ---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
                +T EA +  ++   AG+ +SY  +    +++++ +  +GYADG P   SG     
Sbjct: 267 GLVPAMTFEAELATVKTVPAGQGLSYAHRYVTPQETVVGIVPVGYADGVPRHASGGQDG- 325

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                 GG   + G  + + G++ MD  + D+        GD +++FG          D 
Sbjct: 326 -----PGGPLRVGGRTLAVAGRVCMDQVVVDLGPGACEVAGDRVELFGTGADGGPTAQDW 380

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A A+GT  Y+++ R+G R  + + 
Sbjct: 381 ADAAGTIAYEIVTRVGARVPRVHV 404


>gi|119963782|ref|YP_948596.1| alanine racemase [Arthrobacter aurescens TC1]
 gi|119950641|gb|ABM09552.1| alanine racemase [Arthrobacter aurescens TC1]
          Length = 417

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 153/381 (40%), Gaps = 31/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL A+++N      ++  A   AVVK +AYG G  ++A A  +AG     V  + E 
Sbjct: 27  AVIDLDAVRHNVRQFVGIASPAAVMAVVKADAYGHGAVQVARAALDAGAAWLGVAHISEA 86

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    +A +           +      +   IS        +            L+V
Sbjct: 87  LALRAAGVEAPLLAWLHTRESNFQAAVAAGIDVGISGWELEAVVAAAREQERPARVHLKV 146

Query: 129 DTGFNRLGLSLQEALDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG  R G ++ +       +    ++ L ++  + SHLA AD+P       QL  FR  
Sbjct: 147 DTGLGRNGCTIADWDQLLGQAMEYQDQGLLRVVGVFSHLAVADEPERPETDEQLAVFREA 206

Query: 186 ISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237
           ++  +          +A++   L  P+ HF L R G+ +YG +     +     +   +T
Sbjct: 207 LAMAEDAGVDTEVRHIANTPAALSRPDSHFDLVRVGLGIYGLSPFDGATSAELGLHPAMT 266

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               +   +K   G+ VSYG   +   +S + +  +GYADG P             +  G
Sbjct: 267 VRTLLSNCKKVPEGQGVSYGLNYRTIEESTLGLVPLGYADGVPR------------IATG 314

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEV----GDYIQIFGP----DIKLDDVALA 349
           G   + G   P++G+I MD  + D+            G    +FG         DD A A
Sbjct: 315 GPVRVNGINYPVVGRIAMDQMVIDLGPLSPEAAAGLKGAEAVMFGNGADGGPTADDWAAA 374

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +GT NY+++ RI  R  + Y 
Sbjct: 375 AGTNNYEIVTRISPRVPRSYV 395


>gi|169630818|ref|YP_001704467.1| alanine racemase [Mycobacterium abscessus ATCC 19977]
 gi|169242785|emb|CAM63813.1| Alanine racemase [Mycobacterium abscessus]
          Length = 405

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 162/387 (41%), Gaps = 35/387 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +  IDL A+ +N   +   +G AR   VVK + YG G  ++A A   AG  +  VTS+ 
Sbjct: 23  AQAVIDLGAIAHNVKLLREHAGTARLMTVVKADGYGHGAVRVARAALAAGADELGVTSIA 82

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           E +++R     A +                 ++   +SS+ Q     +   S G     +
Sbjct: 83  EALQIRAAGLDAPLLAWLHAPGADYAAALHADVEVAVSSLGQLGELLAAARSTGRQAITS 142

Query: 126 LQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++VDTG NR G+     ++  +    +  ++  +L  I+SH A AD P      +Q+ RF
Sbjct: 143 IKVDTGLNRNGVPAGYTRDLFEALAKAQAEESIRLRGIMSHFAYADQPGHPTVDMQIGRF 202

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTD----------KIN 227
              +   +G       A L++S+  L  P+  + + RPGI++YG             +  
Sbjct: 203 NEALELARGFGLRYELAHLSNSAATLTRPDARYDMVRPGIAVYGINPLGAAESATSNRGR 262

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            S  +   ++    +  ++   AGE VSYG      RD+  A+  IGYADG    L    
Sbjct: 263 TSFDLIPAMSLTCAVSSVKPVSAGEGVSYGHVWTAPRDTNAALIGIGYADGVVRALGNRF 322

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGP----DIK 342
                      +  I G   P +G++ MD  + D+ D    ++ GD   +FGP    +  
Sbjct: 323 -----------EVAIGGRRYPNIGRVCMDQFVVDLGDNDAGVQAGDVATLFGPGTGGEPT 371

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             D A    T  Y+++     R  + Y
Sbjct: 372 AQDWAELLDTIAYEVVTGPRGRVVRTY 398


>gi|297243200|ref|ZP_06927137.1| alanine racemase [Gardnerella vaginalis AMD]
 gi|296888849|gb|EFH27584.1| alanine racemase [Gardnerella vaginalis AMD]
          Length = 459

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 97/406 (23%), Positives = 168/406 (41%), Gaps = 44/406 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGN--------ARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ++ +DL AL++N  ++                   VVK + YG G    A A    G   
Sbjct: 33  QVIVDLKALRDNMRTLVERVSQDLQPSQNAPEVMGVVKADGYGHGLVPSALAALAGGATW 92

Query: 60  FFVTSVEEGVKLRLYTPQ-ARIFVLYGIHPG---QEKIIFDTNLIPVISSVPQLTFYS-K 114
                  E ++LR      +R  +L  +      +   +   ++   + SV  L   +  
Sbjct: 93  LGTAQPYEALRLRAAGIDSSRCHILTWLTSAPTTRFADLITADIDISVGSVDSLDAVAFA 152

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171
               G      ++VDTGF R G + +    AL+      ++ + ++    SHLA AD P 
Sbjct: 153 ARKLGKPARVHVKVDTGFGRNGFTPEGFSAALEKLQQYSSEGVIEVIGQWSHLAVADSPD 212

Query: 172 SH----VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGG 222
                     Q+++F    +  K          LA+++  L  P   F+L RPGI LYG 
Sbjct: 213 VPEFVDATDRQIQQFHEFTNRMKEASVAPKIRHLANTAATLNRPEIRFELVRPGIGLYGY 272

Query: 223 TDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
                    +++ +Q  +T +A++  ++    G  +SYG       ++  A+  +GYADG
Sbjct: 273 EPDPAMGDSQTYGLQPAMTLQAQLGTVKAVEEGHGISYGRTYLTPNNTSTAIVPLGYADG 332

Query: 279 YPLTLSGLDSEHSPSVFL-GGKGFIK-GYMVPIL---GKITMDMTMFDITDS---LSIEV 330
              + SG D + +  V   GG   ++      IL   G++ MD  + D+      L +  
Sbjct: 333 ILRSASGFDMQGARHVDKQGGPVRVETNKGARILNVSGRVCMDQFIVDLKGDAAELGVRE 392

Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           GD + +FGP       +   DD A A+GT +Y+++  IG R  + Y
Sbjct: 393 GDTVTLFGPGRGVEFAEPTADDWAEAAGTISYEIMTGIGPRVPRLY 438


>gi|269796206|ref|YP_003315661.1| alanine racemase [Sanguibacter keddieii DSM 10542]
 gi|269098391|gb|ACZ22827.1| alanine racemase [Sanguibacter keddieii DSM 10542]
          Length = 412

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 100/393 (25%), Positives = 164/393 (41%), Gaps = 25/393 (6%)

Query: 1   MHSNEF-LRLKIDLTALKNNWHSMNALSG-----NARTAAVVKDNAYGLGCEKIAPALYN 54
           M S  F  R  +DL A+++N   +   +       A+  AVVK + YG G    A A   
Sbjct: 1   MTSRYFPARAVVDLGAIRSNVTELARRAAPSADRQAQVLAVVKADGYGHGLVPAARAAVA 60

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-YS 113
            G         +E + LR      R+             +   ++   ++ V  L    +
Sbjct: 61  GGATWLGAAQAQEALDLRAAGVTTRLLTWLAAPGAPYAELLRADVDVSVADVWALDAVVA 120

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDP 170
                G +    ++VDTG  R G+   E  D    +   +   + ++  I SHLA AD+P
Sbjct: 121 AARETGRTARVHVKVDTGLGRNGVMPDELGDVLARAVQAQSEGVLEVVGIWSHLALADEP 180

Query: 171 SSHVNSVQLERFRTLI--SHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225
                  Q E F   +  +   G       LA+S+  L  P  H+ L RPG+++YG +  
Sbjct: 181 EHPSVLAQAEAFDDAVRLAERAGAHLEVRHLANSAATLTAPRLHYDLVRPGLAVYGLSPV 240

Query: 226 INKSHPMQ----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
            +   P        +T EAR+  +++  AG  VSYG +   T D+++ V  +GYADG P 
Sbjct: 241 PDLGGPGDYGLVPAMTLEARLATVKRVPAGHGVSYGHRYTTTEDTVLGVVPVGYADGVPR 300

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-- 339
             SG        V +G         + + G++ MD  + D+  + +   GD + +FG   
Sbjct: 301 HASGGPGTTGGPVRVGSGAT--ARTLGVAGRVCMDQVVVDLGPAATEAAGDTVVLFGSGA 358

Query: 340 --DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
                  D A A+GT +Y++  R+G R  + Y 
Sbjct: 359 DGGPTAQDWADAAGTISYEITTRLGARVPRVYV 391


>gi|254497101|ref|ZP_05109922.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353681|gb|EET12395.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 351

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 91/361 (25%), Positives = 165/361 (45%), Gaps = 21/361 (5%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I+ +AL +N   +   +   +   +VK NAYG G   + P L    V+ F V  +EE + 
Sbjct: 3   IEPSALLHNLAQIRRFAPGKKIITMVKANAYGCGLHAVVPVL-EGQVEAFGVACIEEAMA 61

Query: 71  LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +R    +    +  G+  P + K++       V+    Q+ +              ++V+
Sbjct: 62  IRKMGSRTYCILFQGVFSPDEFKMVAQYQFGCVMHQPHQMQWLLN-TPLDTPIKLWVKVN 120

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTL-IS 187
           TG +RLG    E  +  +   +         +++HLACAD+P    N  Q+  F  + ++
Sbjct: 121 TGMHRLGFKPHELQEVMNALQDCPWVDKEIGLMTHLACADEPECIENVQQISLFEQISVA 180

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244
            +   + S+A+S+ I+  P  H  + RPGI LYG +    +      +  V+   + I  
Sbjct: 181 GFS--QRSIANSAAIISFPQTHADVVRPGIMLYGVSPFAKQTAIDLGLVPVMRFVSAISA 238

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           +        V Y G  K  + S I + A GY DGYP  ++                +++G
Sbjct: 239 VYDHPPFAQVGYSGTWKSDKPSRIGIVAAGYGDGYPRHIA-----------ANTPIWVQG 287

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             V I+G+++MDM   D+T+   I+ G  ++++G  I ++ +A A+GT+ Y+LL +I  R
Sbjct: 288 REVTIVGRVSMDMLAVDLTEHPDIQPGAPVELWGTHILVERIAQAAGTSGYELLCQISER 347

Query: 365 Y 365
            
Sbjct: 348 V 348


>gi|182680013|ref|YP_001834159.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635896|gb|ACB96670.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 373

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 21/369 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW ++ A+SG     AVVK +AYGLG   +  ALY AG + FFV    EG
Sbjct: 15  LTIDLAAIVANWQTLQAVSG-TECGAVVKADAYGLGLHPVVKALYEAGCRTFFVAHAFEG 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-------SKLMSCGVS 121
            ++R   P+A I+VL G+ P QE      NL PV++SVP++  +        K    G  
Sbjct: 74  AEVRALAPEAIIYVLNGVRPAQEYTFAAHNLRPVLNSVPEVEDWGQYCATSHKRAPDGSL 133

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L++DTG N+LGL L +     H S    L  ++L++S L  A      +   Q+E 
Sbjct: 134 LKAGLRIDTGVNQLGLKLYDLERVDHLS---PLFDVTLLLSQLVTA---DDSIADRQIEA 187

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           F  + + Y G+ ASLA+S+ I L  N   + L RPG +LYGG     + +PM+ VV  +A
Sbjct: 188 FDKIRARYPGVPASLANSAAIFLDNNPPLYDLVRPGYALYGGNPVPGRPNPMRPVVRLDA 247

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            II +R    G  V      K      + + A G ADG P  L+  +        +GGK 
Sbjct: 248 HIIQVRVLEPGHSVGVERLWKARGPRRVIMVAAGLADGIPSGLTDNEKH------VGGKA 301

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I+G + P +  I MD ++ D++D+  +E G+ +++ G  + +DD A  +  + Y++L  
Sbjct: 302 LIQGTLCPYVSDIAMDYSVIDVSDATYLERGEMVELLGKTVTIDDFAAMANVSGYEILSN 361

Query: 361 IGTRYAKFY 369
           +G R  + Y
Sbjct: 362 LGRRCHRRY 370


>gi|110597832|ref|ZP_01386115.1| alanine racemase [Chlorobium ferrooxidans DSM 13031]
 gi|110340557|gb|EAT59040.1| alanine racemase [Chlorobium ferrooxidans DSM 13031]
          Length = 383

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 96/369 (26%), Positives = 150/369 (40%), Gaps = 25/369 (6%)

Query: 14  TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72
             L  N   +    G   R   +VK NAYG    K++ AL   G+ DF V ++ E ++L+
Sbjct: 26  DHLLWNTRLIRKQVGETPRIMGIVKANAYGHNVHKVSAALETIGITDFGVANIHEAIELK 85

Query: 73  LYTP---QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQV 128
                   A I           +     ++   +     L    ++ +    +    L+V
Sbjct: 86  TGGALKNPASILAFSSPLTSHIECFLQHDIDMTLCDSETLQAAEEIAAAHNKTLSVQLKV 145

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  RLG     A++      N +  QL  I +H A +  P     + QL  F+ L S 
Sbjct: 146 DTGMGRLGTHPSMAMELLRCMENAEHLQLKGIYTHFADSSSPGG-FTAQQLAEFKRLTSE 204

Query: 189 YKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEAR 241
           Y+      +    A+S  IL  P     + RPGI LYG     +      ++ V+  EA+
Sbjct: 205 YEHAVSRTVCKHAANSGAILTAPGSWLDMVRPGILLYGYHPAKHTPLRLEVKPVMQVEAK 264

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I I+   AG  +SY           IA  A GYADGY   LSG                
Sbjct: 265 VIFIKTVEAGTTLSYNRTWSAPTLRSIATIAAGYADGYARVLSG-----------KATVM 313

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVR 360
           I G   P +G +TMD  M D+     ++ GD   +FG D    + ++  +GT +Y+ L  
Sbjct: 314 INGKPYPQVGTVTMDQIMVDLGTEHDVKKGDRATLFGWDGPSAEALSEIAGTISYETLCS 373

Query: 361 IGTRYAKFY 369
           + +R  + +
Sbjct: 374 VSSRVKRIF 382


>gi|269123699|ref|YP_003306276.1| alanine racemase [Streptobacillus moniliformis DSM 12112]
 gi|268315025|gb|ACZ01399.1| alanine racemase [Streptobacillus moniliformis DSM 12112]
          Length = 342

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 93/361 (25%), Positives = 155/361 (42%), Gaps = 28/361 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL A K N   +      ++  A+VK NAYG G  KI  +    G+  F V  +EE 
Sbjct: 5   AIIDLDAFKKNLDKILEKIPASKVMAIVKANAYGHGSIKIVESAIEKGINFFGVARIEEA 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            ++    P+  + VL  I     +      +   ISS   + +    +   ++  +   +
Sbjct: 65  EEILNIFPKVDVLVLSPIMKSDIENAVSKGIHLTISSFEDIEYI---LENKINGNFHYAL 121

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           DTG  R+G    E     + +F+    +   I SHL+ A D  +   ++Q+E+F  +++ 
Sbjct: 122 DTGMGRIGFMEDE----IYRAFSM--LKPIGIYSHLSSA-DNDNEYTNMQIEKFNRIVND 174

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
                  + +S G +      + L R GI +YG       +   + V+T +AR+  I+  
Sbjct: 175 LDVKYKHILNSFGSINN-YEDYDLYRLGIIMYG----AEMTDIFKPVMTFKARVNHIKVL 229

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
                + Y      +    IA  + GYADG   ++S              K +  G   P
Sbjct: 230 EKDTYIGYSKTYLASCGEKIATISCGYADGMLRSMSNRS-----------KVYFNGKYYP 278

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
           I+G I MD  M  + D   I+V DY++IFG +I + D+A    T +Y+LL  I  R  + 
Sbjct: 279 IVGNICMDQFMIKVDD--DIKVNDYVEIFGNNILVGDLAKELNTISYELLCAISHRVKRI 336

Query: 369 Y 369
           Y
Sbjct: 337 Y 337


>gi|119476766|ref|ZP_01617076.1| alanine racemase 1, PLP-binding, biosynthetic [marine gamma
           proteobacterium HTCC2143]
 gi|119450022|gb|EAW31258.1| alanine racemase 1, PLP-binding, biosynthetic [marine gamma
           proteobacterium HTCC2143]
          Length = 338

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 150/349 (42%), Gaps = 28/349 (8%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG-IHPGQE 91
            A+VK +AYG G  ++A  L         V  VEE ++LR      RI VL G +     
Sbjct: 1   MAMVKADAYGHGLIEVAATLDA--ADGLAVARVEEALELRAAGFMQRILVLAGALTLTDL 58

Query: 92  KIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150
                 ++  VI S  Q   F +  +S        L++D+G +RLGLS  +   +     
Sbjct: 59  LQCSRQSIDLVIHSANQVDEFLAATLSA--PVNIWLKIDSGMHRLGLSADQFQQYQQQLS 116

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF 210
                +  L ++H   +D  ++     Q   F   ++ +  +  SLA+S+ I+  P+ H 
Sbjct: 117 RSSNSREILSMTHFGSSDADNTQQTQQQEALFEEAVAGFS-VPQSLANSAAIIKRPSSHR 175

Query: 211 QLTRPGISLYGGTDKINKSHPMQTV-----VTAEARIILIRKALAGELVSYGGQKKLTRD 265
              RPGI LYG      +S  +  V     +T  + +I  R   AG+ V Y  +     D
Sbjct: 176 DWVRPGIMLYGANPLTAESQHLFPVNLQTVMTLSSEVIATRGVKAGDSVGYNSRWTAPSD 235

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
           S+IA   +GY DGYP                G    + G    ++G ++MD+   D+T  
Sbjct: 236 SIIATVGVGYGDGYPRHARN-----------GTPVLVNGQRAALVGAVSMDLITIDVTHC 284

Query: 326 LSIEVGDYIQIFGP-----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            ++ VGD + ++G       +  ++VA  + T +Y+L   +  R  K Y
Sbjct: 285 NTVSVGDEVTLWGNASTGHQLAAEEVAQWAETISYELFTSVTPRVIKTY 333


>gi|221635562|ref|YP_002523438.1| alanine racemase [Thermomicrobium roseum DSM 5159]
 gi|221158172|gb|ACM07290.1| alanine racemase [Thermomicrobium roseum DSM 5159]
          Length = 433

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 104/381 (27%), Positives = 153/381 (40%), Gaps = 29/381 (7%)

Query: 7   LRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L   IDL  L  N  ++   L  +    AV+K NAYG G    A A    G +   V  +
Sbjct: 40  LHAIIDLDQLATNARTLVRFLPPDVELLAVLKANAYGHGLVPSALAALAGGARWLGVARI 99

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPY 124
           EEG+ LR     A + VL   +  + +     +L   + S+  +    S   + G     
Sbjct: 100 EEGLLLRQAGLTAPVIVLGPPNHARLRAAVAADLTLAVGSLADVEAVRSAASALGRPARV 159

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG +R G +  EA+       +  L     I +H A AD P       Q+ERFR 
Sbjct: 160 HLEVDTGMHRFGATPDEAVALARGLASDPLLSFEGIYTHFATADAPDCRTLRRQMERFRA 219

Query: 185 LISHY--KGIEA---SLASSSGILLGPNYHFQL-----TRPGISLYGGTDKIN--KSHPM 232
           +      +GI       A+S+  L G      L      R GI  YG T          +
Sbjct: 220 VRERLLAEGIHPPVVHQANSAATLRGALGDPDLPGRRVVRVGILFYGLTPDPALLLPPGI 279

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T +AR+       AGE +SYG        +   +  +GYADG P  LS        
Sbjct: 280 RPALTLQARLARCFVVHAGEGISYGHTYVTKALTHCGLVPVGYADGLPRALSNQ------ 333

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G   ++G   PILG++ MD T   +      E+G  + + G      +   D A 
Sbjct: 334 -----GWFLVQGQRCPILGRVCMDQTTISLEAVPQAEIGTTVIVLGTGEDGAMTAWDAAT 388

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
            SGT  Y++L  + TR  + Y
Sbjct: 389 LSGTIAYEILTSLATRIPRLY 409


>gi|209964879|ref|YP_002297794.1| alanine racemase [Rhodospirillum centenum SW]
 gi|209958345|gb|ACI98981.1| alanine racemase [Rhodospirillum centenum SW]
          Length = 384

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 187/370 (50%), Gaps = 20/370 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  NW  + A    A   AVVK +AYGLG   +A  L   G   FFV   E G
Sbjct: 20  LVIDLGALAANWRDLAARVAPAECGAVVKADAYGLGAGPVARRLLAEGAHTFFVADTEAG 79

Query: 69  VKLR----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHP 123
           + LR       P+ RI VL+G+ PG    +    L+P ++++  L  +       G   P
Sbjct: 80  MALRTVLPAMQPEPRIVVLHGVPPGAAPDLAAARLLPALNTLGDLERWRAEGQRRGAPLP 139

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + +DTG NRLGL+  E      ++       ++   +SHLACAD P+  +   QL RF
Sbjct: 140 CFVHIDTGMNRLGLTAAELDTLAGDADRLLAGVRVESWMSHLACADHPADPMTKTQLGRF 199

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           R  ++      ASLA+S+GI  G +YHF L RPGI+LYG        +PM+ VV   ARI
Sbjct: 200 RAALARLPAARASLANSAGIFHGRDYHFDLVRPGIALYGPNPAPWTENPMRPVVRVFARI 259

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             +R   AG+ V Y    ++ R   IA   +GYADGYP  LSG            G    
Sbjct: 260 HQVRPVSAGDTVGYDATHRIGRPGRIAALGMGYADGYPWALSGR-----------GAALF 308

Query: 303 KG-YMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
            G Y  P++G+++MD+   D+TD     +  G + ++ GP   +D  A  +GT  Y++L 
Sbjct: 309 GGAYRAPLVGRVSMDLLTADVTDVPEQFLAEGGWAEVIGPHRPVDTAATEAGTIGYEVLT 368

Query: 360 RIGTRYAKFY 369
           R+G+RY + +
Sbjct: 369 RLGSRYHRVH 378


>gi|312140864|ref|YP_004008200.1| alanine racemase [Rhodococcus equi 103S]
 gi|311890203|emb|CBH49521.1| putative secreted alanine racemase [Rhodococcus equi 103S]
          Length = 414

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 166/381 (43%), Gaps = 28/381 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
               IDL A+  N   +   +G A   AVVK +AY  G   +A A   AG  +  VT++ 
Sbjct: 38  AEAVIDLDAVAYNIGILREHAGGATVMAVVKADAYNHGAVPVARAALAAGAGELGVTTLA 97

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYA 125
           EG++L+     A +                  +   +SS        +     G +    
Sbjct: 98  EGLELKNAGITAPVLSWLHTADSDFAPAVAAGVELGLSSPRHLAAVAAAARQVGTAATVT 157

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           ++VDTG NR G+S +E  DF  +      +   +   + SHLA AD+P   V   Q ERF
Sbjct: 158 VKVDTGLNRNGVSREEWTDFLKDLARVEAEGAVRFKGVFSHLAHADEPHHPVIDDQRERF 217

Query: 183 RTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVV 236
            + +   + I      A L++S+  L  P+  F + RPGI++YG +   +  +  ++ V+
Sbjct: 218 TSALEDAERIGLVPEAAHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPDLGTFGLRPVM 277

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  +R+ L++K  AGE VSYG       D+ +A+  +GYADG P  L G           
Sbjct: 278 TFRSRVALVKKVAAGEGVSYGHTWVAPHDTTVALLPVGYADGIPRALGGRF--------- 328

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPD------IKLDDVALA 349
             + ++     P +G++ MD  + D+  D   +  GD    FG            D A A
Sbjct: 329 --EVWLGDDRRPGIGRVCMDQVVVDLGPDGAGVREGDTAVFFGDGDGDRGVPHAQDWADA 386

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
             T +Y+++  +  R  + Y 
Sbjct: 387 LDTIHYEVVTSVRGRTIRTYV 407


>gi|86144171|ref|ZP_01062508.1| alanine racemase [Leeuwenhoekiella blandensis MED217]
 gi|85829433|gb|EAQ47898.1| alanine racemase [Leeuwenhoekiella blandensis MED217]
          Length = 365

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 95/368 (25%), Positives = 148/368 (40%), Gaps = 21/368 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++DL AL +N+  +   L  + +   VVK  AYG     +A  L   G+    V    E
Sbjct: 6   LELDLNALSHNYDYLRSKLEPDVKMLGVVKAYAYGSASVAVAKKLEEKGIDYLAVAYTAE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125
           GV LR    +  I VL+      ++II    L P I S   L  ++++       ++P  
Sbjct: 66  GVALREAGIKTPILVLHPQIENFDQII-KHQLEPSIYSFRVLKAFTEITEAQGLKAYPIH 124

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRT 184
           ++ +TG NRLG       D        +  ++  + SHLA ++DP+       Q+E F  
Sbjct: 125 IKFNTGLNRLGFKDVNEKDILEQLHATEALKVKSLFSHLAASEDPNERTFTLQQIENFEN 184

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
              H             +++S I+  P   F + R GI LYG  +   +   ++ V T +
Sbjct: 185 NAKHMIAGLGYTPMLHQSNTSAIINYPQAQFDMVRSGIGLYGYGNTQEEDLKLKPVATLK 244

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I  I     GE V Y       +    A   IG+ADG                   G 
Sbjct: 245 TVISQIHDISIGETVGYNRAHTAAKLGRSATLPIGHADGISRAYGKGR----------GY 294

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G   PI+G + MDM M D+T     E GD + IFG       ++    +  Y+L+ 
Sbjct: 295 VMINGKKAPIIGNVCMDMIMVDVTKI-DCEEGDEVVIFGKGASAVALSARIKSIPYELIT 353

Query: 360 RIGTRYAK 367
            +  R  +
Sbjct: 354 AVSQRIER 361


>gi|313885619|ref|ZP_07819369.1| alanine racemase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619349|gb|EFR30788.1| alanine racemase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 395

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 87/402 (21%), Positives = 153/402 (38%), Gaps = 49/402 (12%)

Query: 3   SNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +   +  ++L+A++ N       L       AVVK NAYGLG E++A     AG +   
Sbjct: 6   EHRPTQAIVNLSAIEANIKWQQAKLEPGQSLIAVVKANAYGLGAEQVARTALKAGAEGLA 65

Query: 62  VTSVEEGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK------ 114
           V +V+EG+ LR     Q  I VL    P     I   NL   +S +       +      
Sbjct: 66  VATVDEGISLRKAGIIQVPILVLGLTDPQGIAEILHYNLTVTVSDLDFFDQAYQQLLTTD 125

Query: 115 --LMSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPS 171
              +   +  P+ L +DTG  R+GL  + E  DF              + +H +      
Sbjct: 126 DLYLLDNLKLPFHLALDTGMTRIGLRTETEVSDFVTKIQAYDWVDFQGVFTHFSTIGGGP 185

Query: 172 SHVNSVQLERFRTLISHYKG--IEASLASSS-GILLGPNYHFQLTRPGISLYGGTDK--- 225
                 Q +R+  L +           A+S+ G+           R G+++YG       
Sbjct: 186 QDYVEYQWQRWLDLTALIPESVKIRHYANSAMGLWQDRQPASTWVRYGVAMYGLDPMDRI 245

Query: 226 --------------INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
                         +N+  P+Q  +   + I+ +++   G  +SYG   + +    IA  
Sbjct: 246 PSHFKEQVDTSQLGLNEEDPLQPALELISEIVYVKEIPQGTKISYGATYQSSEKEWIATI 305

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331
            IGYADG+  +   +               ++G+  P++G+I MD  M  +        G
Sbjct: 306 PIGYADGWLRSYQVI------------PVLVEGHACPVVGRINMDQLMIRLPHYYP--KG 351

Query: 332 DYIQIFGPDIKLDD----VALASGTTNYDLLVRIGTRYAKFY 369
             + + GPD    +    +A  + T  Y+++  +  R  + Y
Sbjct: 352 TPVTLIGPDHGAYNHISWIAQQTSTIGYEIMTNLSDRIPRIY 393


>gi|271962687|ref|YP_003336883.1| alanine racemase [Streptosporangium roseum DSM 43021]
 gi|270505862|gb|ACZ84140.1| Alanine racemase [Streptosporangium roseum DSM 43021]
          Length = 371

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 146/380 (38%), Gaps = 28/380 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
               ++DL+A+++N   +   +  A    VVK + YG G      A    G        +
Sbjct: 3   PAEARVDLSAIRDNVALLGEHAPGAEIMVVVKADGYGHGMAACGRAALEGGATRLGTAYI 62

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
            E ++LR     A I                  +     +   +   +      GV+   
Sbjct: 63  REALELRAAGVTAPILSWIIPPGEPLDEAVGQGVELSAGTPALVDEIAAAAGRTGVAARV 122

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G +  +       +  ++     +++ + SH ACAD P       QL  
Sbjct: 123 HLKADTGLARGGAAPADWPALVDRAMARQFEGTIEVAGLWSHFACADIPGHPSVHAQLTA 182

Query: 182 FRTLISHYK-------GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQ 233
           F   ++  +        +   +A+S+  +L P  H+ + RPG++ YG +         ++
Sbjct: 183 FDDALAIAEKAGAGGSHVIRHIANSAATMLLPQAHYDMVRPGLATYGLSPVPELGGFGLR 242

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  ARI L ++   G  VSYG      R++ + +  +GYADG     +      +  
Sbjct: 243 PAMTLVARIALAKRVPVGSGVSYGHLYVTERETTLGLVPLGYADGILRHATNRAEVLAGG 302

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                 G            + MD  + D+ D   +  GD + +FG     +    + A +
Sbjct: 303 RRRRIAGR-----------VCMDQFVIDVGDDP-LAEGDEVILFGDGSRGEPTAQEWADS 350

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT  ++++ RIG+R  + Y
Sbjct: 351 LGTITHEIVTRIGSRVPRVY 370


>gi|126640203|ref|YP_001083187.1| alanine racemase 2 PLP-binding, catabolic [Acinetobacter baumannii
           ATCC 17978]
          Length = 343

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 85/351 (24%), Positives = 138/351 (39%), Gaps = 28/351 (7%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87
            N++  AVVK NAYG G E++  A        F +  ++E  ++R       I +L GI 
Sbjct: 2   PNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLDLDEAKRIRALGWTGPILLLEGIF 59

Query: 88  -PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146
            P          L   I S  Q+ +  +           L++++G NRLG   Q  +   
Sbjct: 60  SPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFDVFLKMNSGMNRLGFKPQHYVQAW 118

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLERFRTLISHYKGIEASLASSSGILL 204
               N         + H + AD           Q+  F  ++    G E S+++S+ IL 
Sbjct: 119 ERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITAFEEIVKDLPG-ERSVSNSAAILR 177

Query: 205 G-PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
                     R GI LYG +            +Q  ++  + II ++     E V YG  
Sbjct: 178 YQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTMSLRSEIISVQHLEPNESVGYGSN 237

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
               +   I + A GYADGY                 G    +       +G+++MDM  
Sbjct: 238 FVAEQPMTIGIVACGYADGYQR-----------ISPTGTPVLVDSVRTRTVGRVSMDMLA 286

Query: 320 FDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVRIGTRY 365
            D+T   S +VG  + ++G       + +DDVA++SGT  Y+L+  +  R 
Sbjct: 287 VDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSGTVGYELMCAVTARV 337


>gi|83945273|ref|ZP_00957622.1| alanine racemase [Oceanicaulis alexandrii HTCC2633]
 gi|83851443|gb|EAP89299.1| alanine racemase [Oceanicaulis alexandrii HTCC2633]
          Length = 363

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 131/369 (35%), Positives = 183/369 (49%), Gaps = 23/369 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N   RL IDL A+  N+ ++ AL+  A T+AVVK NAYGLG   +A  L   G + FFV 
Sbjct: 11  NTRSRLVIDLDAIARNYAALQALTPKAETSAVVKANAYGLGAGPVARRLAKQGARTFFVA 70

Query: 64  SVEEGVKLRLY--TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           +VEEG  +R     P   I+V  G       +     L  +++   +   +        +
Sbjct: 71  TVEEGAAVREALGDPLPDIWVFAGYRAKDRPLYVKHRLGAILNQPGETAQFRAA----PT 126

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            P A+ +DTG  RLG    +     +   N     +S+I+SHLAC++D +S  N  QLER
Sbjct: 127 GPCAIHIDTGMARLGYGAGDISGLLNALQN---LDVSMIMSHLACSEDAASTQNLRQLER 183

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           F  L +       SLA++ G+LLG +Y F +TRPGI LYG T  ++   P + VV  EA 
Sbjct: 184 FTALTNALPETRLSLANTGGVLLGESYQFDVTRPGIGLYGATADLDADTPFEPVVKLEAP 243

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I+ +R+  AG+ V YG         L+A    GYADG P  LSG            G   
Sbjct: 244 ILQLREIDAGDTVGYGATYVAHSPRLVATVGAGYADGLPRALSG-----------AGCAR 292

Query: 302 IKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           I G   PILG+I+MD+T  D+T     I  G   + FGPD+     A   GT  Y++L  
Sbjct: 293 IAGLRAPILGRISMDLTTIDVTGLEHEIAQGAVPEFFGPDLY--QAAALDGTLPYEILTG 350

Query: 361 IGTRYAKFY 369
           +G R  + Y
Sbjct: 351 LGARAERIY 359


>gi|15639668|ref|NP_219118.1| alanine racemase (alr) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|3322978|gb|AAC65644.1| alanine racemase (alr) [Treponema pallidum subsp. pallidum str.
           Nichols]
          Length = 357

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 94/361 (26%), Positives = 147/361 (40%), Gaps = 32/361 (8%)

Query: 30  ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89
           AR    VK +AYG G   +A A  + GV  F V  V+E  +LR    +A I  L      
Sbjct: 6   ARVCLPVKADAYGHGACDVAQAALSCGVHSFAVACVQEASQLRAAGVRAPILCLSTPTAE 65

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKL----MSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
           +   + +  +  VIS    +   ++        G +    +++DTG  R+G +  EA   
Sbjct: 66  EISSLIEHRVHTVISERAHIALIARALRQSADTGATCGVHVKIDTGMGRIGCAPDEACAL 125

Query: 146 THNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERFRTLISHYK--GIEA---SLA 197
                      L  + +H + AD           +Q   F   + + +  GI       A
Sbjct: 126 VQMVCATPGLHLEGVCTHFSVADSVRAEDLQYTEMQRAHFMHCVQYIRKSGISIPLVHAA 185

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEARIILIRKALAGELV 254
           +S+ +L  P  HF + RPG+  YG   +            V+    ++  I+K  AG  V
Sbjct: 186 NSAALLCHPRAHFDMVRPGLLAYGYAPESVHPAVRSVFLPVMELVTQVRAIKKIPAGAYV 245

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
           SY    +   ++ + +  IGYADG    LS            G +  I G   P++G I 
Sbjct: 246 SYQRLWRAHTETHVGILPIGYADGVMRALS-----------PGLQVCIGGKWYPVVGAIC 294

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALASGTTNYDLLVRIGTRYAKF 368
           MD  + D+   L + VGD + +FGP          D +A  +GT  Y+LL  IG R  + 
Sbjct: 295 MDQCVVDLGTPLRVTVGDRVTLFGPQDAGGPGQGADVLASHAGTIPYELLCAIGKRVERV 354

Query: 369 Y 369
           Y
Sbjct: 355 Y 355


>gi|86137544|ref|ZP_01056121.1| alanine racemase [Roseobacter sp. MED193]
 gi|85825879|gb|EAQ46077.1| alanine racemase [Roseobacter sp. MED193]
          Length = 345

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 184/365 (50%), Gaps = 27/365 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RL I+L AL  NW ++NA++ N  TAAVVK N YGL   ++A AL   G ++FFV + E
Sbjct: 4   ARLTINLDALVTNWQNLNAMT-NCETAAVVKANGYGLDAARVATALAKGGARNFFVAAAE 62

Query: 67  EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EGV LR    P   I V  G   G  +++ +  L P+++S+ Q+    +       H + 
Sbjct: 63  EGVALRRALGPGPGISVFSGHMEGDTRLLKEFQLAPMLNSLDQML---RHFETLPGHTFG 119

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D+G NRLG+   E       +  +      L++SHLAC+D+P   +N+ QL+ FR +
Sbjct: 120 VQLDSGMNRLGMEPAEWAAVRDIALGQA---PVLLMSHLACSDEPGHPMNAQQLQAFREM 176

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
               + +  SLA++ GILLG +YHF L RPG+ LYGG    +       VV  +  +I  
Sbjct: 177 TDGLE-VPRSLAATGGILLGRDYHFDLCRPGVGLYGGAPYGDA----MPVVQLDLPVIQT 231

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE V YG        S IA  A GYADG    L             GG     G 
Sbjct: 232 RDVAPGESVGYGNSWVAQVPSRIATVAAGYADGLHRAL-----------MTGGIDLFAGE 280

Query: 306 -MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              P++G+I+MD+   D+T          + I      +D +A A+GT  Y++L  +G R
Sbjct: 281 ARCPVVGRISMDLVTVDVTALPETPA--SLSILNEVQTVDTLANAAGTIGYEMLTSMGHR 338

Query: 365 YAKFY 369
           YA+ Y
Sbjct: 339 YARTY 343


>gi|121611251|ref|YP_999058.1| alanine racemase [Verminephrobacter eiseniae EF01-2]
 gi|166969436|sp|A1WQY3|ALR_VEREI RecName: Full=Alanine racemase
 gi|121555891|gb|ABM60040.1| alanine racemase [Verminephrobacter eiseniae EF01-2]
          Length = 371

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 152/379 (40%), Gaps = 34/379 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++ +I  +AL+ N   +     +A+  AVVK NAYG G  ++  +L   G   F +  
Sbjct: 3   RPIQARIHSSALQANLRRVRQSVPDAKVWAVVKANAYGHGIARVFESLR--GADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E   LR    +  I +L G+  P   ++     L  V+    Q+   +   S    H 
Sbjct: 61  LAEAQGLRGLGWRGPILLLEGVFEPRDLELCSRLGLWHVVHCDEQIDMLAAHRSQAPQH- 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+++ G NRLG + Q                   +++H + AD P     + QL  F 
Sbjct: 120 VFLKLNAGMNRLGFAPQRYRSAWARLGALAQVDEISLMAHFSDADGPRGI--APQLAAFV 177

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKI----NKSHPMQTVV 236
                  G   SL +S+  L      +      R GI LYG              +Q  +
Sbjct: 178 RATQDLPGA-RSLCNSAATLRHAADASVRADWVRAGIVLYGSAPDFPGHDAGHWGLQPAM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T   R+I +++  AG+ V YG +        I VAA GYADGYPL               
Sbjct: 237 TLATRLIGVQQLQAGDTVGYGARFVAPGPMAIGVAACGYADGYPLHCG-----------T 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV----GDYIQIFGPD-----IKLDDVA 347
           G    + G    ++G+++MDM   D+T      +    G  + ++G       + +D+VA
Sbjct: 286 GTPVLVDGIRTRVVGRVSMDMLTVDLTPLQRAGLQPGFGSEVTLWGRASSGAVLSIDEVA 345

Query: 348 LASGTTNYDLLVRIGTRYA 366
            A GT  Y+L+  +  R  
Sbjct: 346 QAGGTLGYELMCALAQRVP 364


>gi|313900478|ref|ZP_07833971.1| alanine racemase [Clostridium sp. HGF2]
 gi|312954540|gb|EFR36215.1| alanine racemase [Clostridium sp. HGF2]
          Length = 416

 Score =  328 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 157/382 (41%), Gaps = 30/382 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +++L  LK N   + AL S + +  AV+K + YG G  +IA A+ +     F V S  E
Sbjct: 39  AEVNLQQLKENTRKVRALLSKDTKLLAVLKADGYGHGAVRIAKAIEDMS-DWFAVASFYE 97

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
             +LR       I V   +     +     N+     S       ++L     +     +
Sbjct: 98  ARELRDQGITTPILVFGFLDDSNIEEAAQKNITCSALSYSYALHIAELCEQKKLRLSMHI 157

Query: 127 QVDTGFNRLGLSLQE-----ALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQ 178
           ++DTGF+RLG++ +E     A       +     Q++ I +H + A           + Q
Sbjct: 158 KLDTGFHRLGIACEEERITEAYKEVRTLYELPQLQITGIYTHFSTAGSKALQDEAFLARQ 217

Query: 179 LERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPM 232
            + F  ++   +            +S   L  P  H  + R G+ LYG G+D   +   +
Sbjct: 218 YQLFCDMLHRLEEDHIDPGIRHCCNSKATLTNPEMHLDMVRVGLYLYGLGSDADIEYLKL 277

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + +V  +ARI  IR    GE + YG      +   IAV ++G+ADGY   L   D     
Sbjct: 278 EPIVNWKARIYAIRDVKQGEGIGYGRTFITPQPMRIAVVSLGFADGYSRCLYASDQV--- 334

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                    + G    ILGKI MD+ M DITD   + V D I + G +    I  + +  
Sbjct: 335 ------YVLVHGKRTRILGKICMDVMMVDITDIPDVRVNDTITVLGSEGTQRISANLLGR 388

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
            +G T  ++   +G R  + Y 
Sbjct: 389 ETGGTAVEVTCGMGKRVQRVYV 410


>gi|148652591|ref|YP_001279684.1| alanine racemase [Psychrobacter sp. PRwf-1]
 gi|172048511|sp|A5WDJ3|ALR_PSYWF RecName: Full=Alanine racemase
 gi|148571675|gb|ABQ93734.1| alanine racemase [Psychrobacter sp. PRwf-1]
          Length = 374

 Score =  328 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 104/381 (27%), Positives = 170/381 (44%), Gaps = 30/381 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S   +   +D  AL +N +  ++ +    +  A+VK +AYG G     PAL +     
Sbjct: 1   MRSASII---LDSKALTHNLNCVIDTVPDTTKVLAMVKADAYGHGIAHCLPALKD--ADG 55

Query: 60  FFVTSVEEGVKLRLYTPQARIFVL-YGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLM- 116
             V    E   +R       I VL  G+    + +   +     +I    Q+ +    + 
Sbjct: 56  LGVACFTEAQHIRELGWDK-ILVLIEGVFSETEWQQSIEAQCQSIIHHQDQVQWALNHLP 114

Query: 117 -SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                     L+++TG NRLG    E  D   +  +   G   ++ SH A AD P+   N
Sbjct: 115 PENSPCRTVWLKLNTGMNRLGFESDELGDVAQSLVDA--GYELILTSHFANADAPNHPSN 172

Query: 176 SVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           + Q++ F   +   +      I+ASL +S+GIL     HF   RPGI LYG +     S 
Sbjct: 173 AKQIDTFTQALQQLREQVDPSIKASLCNSAGILNFKACHFDWVRPGIMLYGSSPVEGVSA 232

Query: 231 PM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            M   + V++ +A ++ I    AG  V YG +    R  +  + +IGY DGYP  + G  
Sbjct: 233 QMLKLKPVMSFKASLMAIHNIAAGTSVGYGSRFVANRPIVKGIVSIGYGDGYPRVVDGSA 292

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343
                SV L G+     Y  P++G++ MDM   D+TD  + +VG  + ++G        +
Sbjct: 293 ---WVSVQLAGE--HSSYKCPVIGRVAMDMIAIDLTDVPNPKVGSQVMLWGDPELGAPSV 347

Query: 344 DDVALASGTTNYDLLVRIGTR 364
           D++A ++ T  Y+LL R+  R
Sbjct: 348 DEIAESAHTLGYELLCRVTQR 368


>gi|254514051|ref|ZP_05126112.1| alanine racemase [gamma proteobacterium NOR5-3]
 gi|219676294|gb|EED32659.1| alanine racemase [gamma proteobacterium NOR5-3]
          Length = 356

 Score =  328 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 93/368 (25%), Positives = 154/368 (41%), Gaps = 19/368 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
                +I    + +N   +  L+ ++R  A VK +AYG     I+ A     V  F V S
Sbjct: 3   RPTYARIFPEHIAHNARRVRELAPDSRIMACVKSDAYGHDI-GISSAALADHVDGFAVAS 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E + +R       + +L G     +        L   I+   QL +  +  S      
Sbjct: 62  MNEALSVRSLHADKPVLMLEGPQTFDEIAEAAHKKLTLCINEWHQLEWLER--SAPGELS 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++DTG +RLG S +                  ++ +H + AD P  +  S QL  F 
Sbjct: 120 CWMKIDTGMHRLGFSPESVPQALARLTPHIKTSDLVLCTHFSSADLPGDNGVSEQLRCFD 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEA 240
              +       S A+S+ I+     H    RPG  LYGG+        S  ++  +   A
Sbjct: 180 ESTAQTSFAH-STANSAAIIRTATSHRDWVRPGYMLYGGSPLADATPASVNLKPAMEFSA 238

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            +I +R+   GE V Y G+ +  R S IA  A GY DGYP                G   
Sbjct: 239 EVISLRELAQGERVGYSGRWEARRPSKIATIAAGYGDGYPRHA-----------PDGTPV 287

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            I+G  +P+ G+++MDM   D+TD+ ++++G    ++G    +D++A  S T  Y+LL  
Sbjct: 288 LIEGQCLPLAGRVSMDMITVDVTDNPAVKIGSRAILWGAQPGVDEIARHSSTIGYELLAG 347

Query: 361 IGTRYAKF 368
           +  R  + 
Sbjct: 348 MPKRVPRI 355


>gi|56415949|ref|YP_153024.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197364876|ref|YP_002144513.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130206|gb|AAV79712.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096353|emb|CAR61958.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 368

 Score =  328 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 109/362 (30%), Positives = 172/362 (47%), Gaps = 15/362 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGEEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           V LR      A + +L G+ P    +     + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRKILSADAMVVLLNGVMPQAMPLCCAQQITPLLNSVDQVMAWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 193

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+G   +   S P++   T    I+ ++
Sbjct: 194 KAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLTILRVQ 252

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L  L                +G  
Sbjct: 253 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNLRPLAG-----------VCWRGVR 301

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 302 LPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIIARLGARFR 360

Query: 367 KF 368
           + 
Sbjct: 361 RI 362


>gi|237743978|ref|ZP_04574459.1| alanine racemase [Fusobacterium sp. 7_1]
 gi|229433009|gb|EEO43221.1| alanine racemase [Fusobacterium sp. 7_1]
          Length = 354

 Score =  328 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 167/373 (44%), Gaps = 32/373 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  ++ N     VVK NAYGLG  +I   L   GV  F V ++
Sbjct: 2   RTWVEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSVEITKILQEIGVNFFGVANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    + +I +L      +        +   ISS+ QL F   L++  ++    
Sbjct: 62  EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQLQF---LVNNKLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + EA        N  L  L  I SHL+ +D+    + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVDEAKKVIEFCKNNNL-NLVGIFSHLSDSDENTVETKNFTLEQIEKF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPN-YHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + +++        +++S+GI    N     L R GI +Y  T      + ++ + T ++R
Sbjct: 178 KKIVNSLNLKYIHISNSAGITNFQNDIVGNLVRMGIGMYSFTGNKKTPY-LKNIFTIKSR 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ I+K      VSYG    L  DS  AV  IGYADG    LS            GG   
Sbjct: 237 VLFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGYVL 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355
           I  +   I+G I MDMTM  I   +   +++GD + +   DI LD++            +
Sbjct: 286 INNHRCEIIGNICMDMTMIRIPKEVENSVKIGDEVTVINADI-LDNLN-----IPELCVW 339

Query: 356 DLLVRIGTRYAKF 368
           + +  IG R  + 
Sbjct: 340 EFMTGIGKRVKRI 352


>gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
 gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
          Length = 849

 Score =  328 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 156/374 (41%), Gaps = 24/374 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               +++DL A+++N  ++ A++G     AV+K +AYG G  + A A    G     V +
Sbjct: 485 RPTWVRVDLDAIRDNVRALRAIAG-VPLMAVLKADAYGHGAVRAARAALAGGAMALAVAT 543

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + E   LR     A I  L    P Q        ++  +         +   + G++   
Sbjct: 544 LGEARTLREAGIGAPILALGYTPPWQVAQAARLGIVLTVFDPDTARACAAAAAIGLNVTM 603

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            ++VDTG  R G+S++E   F     +    ++  + +H A AD         QL RF  
Sbjct: 604 HVEVDTGMARTGVSVEELGPFLRLLTDLPGVRVEGLYTHFADADAADLSAAEAQLRRFCA 663

Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVT 237
            +     +  +      A+S+ +L  P   F + RPGI+ YG     +   P   +  ++
Sbjct: 664 TLDAITSAGLRPPIVHAANSAALLRLPGARFDMVRPGIACYGLAPSPHTPLPPTLRPALS 723

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A +  +R    G  VSYGG     R S IA   +GYADG                   
Sbjct: 724 FHAEVAQVRDLPPGAPVSYGGTFVTRRASRIATIPVGYADGLRRA------------PAW 771

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            +  ++    PI+G+I MD  M D+TD   +  GD + + G      +  D++A   GT 
Sbjct: 772 REVLVRRRRAPIVGRICMDYAMIDVTDIPGVRRGDQVTLIGSQGDERLTADEIAGWLGTI 831

Query: 354 NYDLLVRIGTRYAK 367
           +YD++  I  R  +
Sbjct: 832 SYDVVATILPRVPR 845


>gi|187478906|ref|YP_786930.1| alanine racemase, catabolic [Bordetella avium 197N]
 gi|123514360|sp|Q2KXU7|ALR_BORA1 RecName: Full=Alanine racemase
 gi|115423492|emb|CAJ50026.1| alanine racemase, catabolic [Bordetella avium 197N]
          Length = 374

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 93/384 (24%), Positives = 149/384 (38%), Gaps = 39/384 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55
             +   I  TAL++N   +      A            AV+K NAYG G E+   A    
Sbjct: 3   RPIFALISPTALRHNLSVVRQHLNRAAVAAGGVPPSIWAVIKANAYGHGIERALRAFSE- 61

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
             Q   +  +EE V+ R       I +L G   P    ++   ++   +    QL   ++
Sbjct: 62  -AQGLAMLDIEEAVRCREAGWAGPILLLEGFFTPQDIDLLDRYHISTAVHCQEQLDMLAR 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                      +++++G NRLG S Q    A +         +      ++H A AD P 
Sbjct: 121 ARPS-HRINAMVKLNSGMNRLGFSPQAYGAAFEAAQALMRDGVLGSVGKMTHFATADGPQ 179

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYGGTD-- 224
                 Q E F+       G   S+ +S+  L  P            RPGI LYG +   
Sbjct: 180 GP--QWQWEVFQAATQGLPG-PVSVCNSAATLRYPELAAGPGATHWVRPGICLYGASPFS 236

Query: 225 -KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                +  ++  +T  A II +++   G+ V YG     ++   + V + GYADGYP   
Sbjct: 237 DTPAAAFGLRPAMTLRAEIIGVQQVSPGQTVGYGATFAASKAMRVGVVSCGYADGYPRH- 295

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIK 342
                        G    + G    +LG+++MDM M D+    +  VG  + ++G     
Sbjct: 296 ----------CATGTPVTVNGVATRLLGRVSMDMMMVDLDPVPAAGVGAPVVLWGEGGPD 345

Query: 343 LDDVALASGTTNYDLLVRIGTRYA 366
           +D VA A GT  Y+LL  +  R  
Sbjct: 346 VDAVAAAGGTIGYELLTALAARVP 369


>gi|221134843|ref|ZP_03561146.1| alanine racemase [Glaciecola sp. HTCC2999]
          Length = 377

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 87/384 (22%), Positives = 166/384 (43%), Gaps = 26/384 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M       ++ID   L  N+  +N  S  + +   VVKD AYG G   IA A  +AG   
Sbjct: 6   MSGIRSAWVEIDHQQLLTNFELINQDSPAHLKKLCVVKDQAYGHGGVVIAKAARDAGYDY 65

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSC 118
             V +++E ++LR    +  I +   +   +        +   ++ + +   ++ L ++ 
Sbjct: 66  LAVETIDEAIELRDAQIELPILIFGEVSDAEFAACLAYRITCCVNDIDKARRFNALCLAQ 125

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSV 177
           G++H   +++D+G +R G+   +A+        +     L  ++SH A +D+      ++
Sbjct: 126 GINHTVHIEIDSGMSRWGVRWSDAIPVIEYIARECDGLVLEGMMSHFAMSDEADKTYANL 185

Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSH 230
           Q  RF  +I   +  +       ++++ G+L  P+ HF + R GI   G    +   +  
Sbjct: 186 QHSRFVEVIEALEQTDITIPLIHMSNTGGLLDLPHAHFNMIRSGILHLGVYPSLVCKRIE 245

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ +++ +A+I  +R+   G+ V YG     +    IA+  IGY DGYP          
Sbjct: 246 GLKPIMSVKAQIPALRQLQVGDCVGYGMHFTASTPMQIAILPIGYGDGYPR--------- 296

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
              V   G   I G   P++G   MD  M D++   ++ +GD + + G      I   D+
Sbjct: 297 ---VRNEGYVLIHGQQCPVVGGNAMDAMMVDVSHLDNVSIGDEVVLMGGQGDEWIDPRDL 353

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
                T  Y++L     R  + Y 
Sbjct: 354 VKWKKTVCYEILTGWRARLPRRYV 377


>gi|311114795|ref|YP_003986016.1| alanine racemase [Gardnerella vaginalis ATCC 14019]
 gi|310946289|gb|ADP38993.1| alanine racemase [Gardnerella vaginalis ATCC 14019]
          Length = 451

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 100/406 (24%), Positives = 173/406 (42%), Gaps = 44/406 (10%)

Query: 8   RLKIDLTALKNNWHSM-----NALSGNAR---TAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ++ +DL AL++N  ++       L    +      VVK +AYG G    A A    G   
Sbjct: 25  QVIVDLKALRDNMRTLIERVSKDLQPGQKSPAVMGVVKADAYGHGLIPSALAALAGGATW 84

Query: 60  FFVTSVEEGVKLRLYTPQ---ARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-K 114
                  E ++LR         RI   L          + + ++   + S+  +   +  
Sbjct: 85  LGTAQPYEALRLRACGIDSSRCRILTWLTSAPTSLFADLINADIDISVGSLDSIDAVALA 144

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171
             S G +    ++VDTGF R G +     +AL+      ++ L ++    SHLA AD P 
Sbjct: 145 AKSVGAAARIHVKVDTGFGRNGFTPAGFSDALEKLSEYSSQGLIEVIGQWSHLAVADCPD 204

Query: 172 SHV----NSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
                     Q+E+F         +  +     LA+++  L  P   F+L RPGI LYG 
Sbjct: 205 VPEFVSSTDRQIEQFHDFTRRMCEAGLEPKIRHLANTAATLNRPEIRFELVRPGIGLYGY 264

Query: 223 TDKI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
                    +++ ++  +T +A++  ++   AG  +SYG       ++  A+  +GYADG
Sbjct: 265 EPDPVMGVPQTYDLRPAMTLQAQLGTVKSVEAGHGISYGRTYLTPDNTSTAIVPLGYADG 324

Query: 279 YPLTLSGLDSEHSPSVFL-GGKGFI---KGYMV-PILGKITMDMTMFDI---TDSLSIEV 330
                SG D + S  V   GG   +    G  +  + G++ MD  + D+      L ++ 
Sbjct: 325 ILRAASGYDMQGSRHVNKPGGPVRVETNNGARILHVSGRVCMDQFIVDLKGSAKELGVKE 384

Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           GD +++FGP       +   DD A A+GT +Y+++  IG R  + Y
Sbjct: 385 GDTVRLFGPGRGIEYAEPTADDWAAAAGTISYEIMTGIGPRVPRLY 430


>gi|309777378|ref|ZP_07672339.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914919|gb|EFP60698.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 398

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 151/382 (39%), Gaps = 32/382 (8%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +++L  L  N   + AL     +  +V+K + YG G  ++A  + +     F V S  E
Sbjct: 21  AQVNLQQLLENTKKVKALLKPQTKLLSVLKADGYGHGAVQVARTIEDES-DWFAVASFYE 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
             +LR +     I V   +     +     ++     S       + L     +     +
Sbjct: 80  AKELREHGITKPILVFGFLDDSHVEEAVQRDITCSALSYEYAMHLAHLCEQKKLRLSMHI 139

Query: 127 QVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQ 178
           ++DTGF+RLG+      LQEA +     +  +   ++ I +H + A             Q
Sbjct: 140 KLDTGFHRLGIDCDENRLQEAYEEVRQLYETEALHITGIYTHFSTAGSKVAQDEAFLKRQ 199

Query: 179 LERFRTLISHYK------GIEASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHP 231
            + F  ++   K      GI     +S   L  P  H  + R G+ LYG G+D   +   
Sbjct: 200 YQLFCEILQCLKEDQIDPGI-RHCCNSKATLTNPEMHLDMVRVGLYLYGLGSDADIEYLK 258

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ +V  +ARI  IR+   GE + Y       +   I V ++G+ADGY   L        
Sbjct: 259 LKPIVNWKARIYAIREVAQGEGIGYSRTFITPKPMRIGVVSLGFADGYARCL-------- 310

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
                     + G    ILGKI MD+ M D+TD     V D + + G      I  + + 
Sbjct: 311 -YASNKVYVLVHGKKTRILGKICMDVMMIDLTDIPEAVVNDTVTVLGCDGEQHISANLLG 369

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             +G T  ++   +G R  + Y
Sbjct: 370 KETGGTAVEITCGMGKRVKRVY 391


>gi|84684702|ref|ZP_01012602.1| alanine racemase [Maritimibacter alkaliphilus HTCC2654]
 gi|84667037|gb|EAQ13507.1| alanine racemase [Rhodobacterales bacterium HTCC2654]
          Length = 349

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 189/365 (51%), Gaps = 26/365 (7%)

Query: 8   RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL+IDL A+  NW +++A  + + +T AVVK + YGLG +++A  L  AG + FFV + E
Sbjct: 5   RLQIDLDAIAANWRALDAKTASSVQTGAVVKADGYGLGVDRVAKTLAAAGARRFFVAAAE 64

Query: 67  EGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   +R    P   IF+L G   G   +I D NLIP++SSV Q    ++ +       + 
Sbjct: 65  EAADVRTALGPGPAIFLLNGHMAGDADMIRDLNLIPLLSSVEQ---LTRHVETLPGQSFG 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+D G NRLG+   E       +        +LI+SHLACAD+P   +N++QL  F  +
Sbjct: 122 IQLDAGMNRLGMEPAEWAAVRDIALTAG---PTLIMSHLACADEPEHEMNAMQLRMFTEM 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 +  SLA++ GILLGP+YHF LTRPGI LYG       +     VV  +  +I  
Sbjct: 179 TEGC-DVPRSLAATGGILLGPDYHFDLTRPGIGLYGARPFEEAT----PVVHLDLPVIQT 233

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+   GE V YG        + +A  + GYADG    LS             G  F    
Sbjct: 234 REIGRGETVGYGNSWTADAPTRVATVSGGYADGITRHLSN-----------KGVLFDSAT 282

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             PILG+++MD    DI    ++    ++ + GP   +DD+A  +GT  Y++L ++G RY
Sbjct: 283 PCPILGRVSMDSIGIDIGHLDTVPE--WLTLIGPHQSVDDIADTTGTIGYEILTQLGHRY 340

Query: 366 AKFYT 370
            + YT
Sbjct: 341 TRDYT 345


>gi|251771481|gb|EES52058.1| alanine racemase [Leptospirillum ferrodiazotrophum]
          Length = 403

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 109/392 (27%), Positives = 166/392 (42%), Gaps = 38/392 (9%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   R+ +DL  L+ N    + +L        V+K NAYG G   ++  + + G+    V
Sbjct: 14  SHRSRVTVDLGGLRENVRAVLRSLPKGTGLLPVIKSNAYGHGIIPVSQLMTDEGIPRVAV 73

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
              +EG  LR      +I +L G  P + ++  +  L P+I  + Q+    +      S 
Sbjct: 74  MGADEGCLLRKSGFSGKIILLGGFAPDEIQLCQNLRLTPIIHHMDQVRALERFSPEAPSL 133

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L++D+G  RLG    E              ++  +++H    +D      S+  E F
Sbjct: 134 DVHLKIDSGMGRLGFLPSEFPLVLDRLQRMPSVKIEGLMTHFPVPEDRED--TSICREIF 191

Query: 183 RTLISHYKGIEA-------SLASSSGILLG--------PNYHFQ---LTRPGISLYGGTD 224
           R  I    G  A        +ASS  IL G        P    +     RPGI LYG   
Sbjct: 192 RQSIVTMIGHPALSALSVVHMASSGAILSGEVMLDLPTPPSGRRISFWARPGILLYGHFP 251

Query: 225 -KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
              N S P++ V   EAR++ IR    G  VSYG   ++ RDS + V  +GYADG P  L
Sbjct: 252 GAHNPSFPVRPVFGLEARVLAIRTLPRGSSVSYGRTVRVDRDSRVGVLGMGYADGLPRLL 311

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY-IQIFGPD-- 340
           SG            G   +  +  P LG+I MDM + D+TD  + E     I +  PD  
Sbjct: 312 SG-----------KGWAVVGNHRAPFLGRICMDMVVVDLTDIPADETHSEWITLIDPDNT 360

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
             + +D +AL   T  Y++L  +G R  + Y 
Sbjct: 361 LSMSVDQLALEGNTIPYEILCLLGHRSERRYV 392


>gi|73542215|ref|YP_296735.1| alanine racemase region [Ralstonia eutropha JMP134]
 gi|72119628|gb|AAZ61891.1| Alanine racemase region [Ralstonia eutropha JMP134]
          Length = 366

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 148/345 (42%), Gaps = 21/345 (6%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83
             L+  ++  AVVK NAYG G  ++ PAL  A    F +  + E V+LR       I +L
Sbjct: 22  RRLAPASKVWAVVKANAYGHGIARVYPAL--ASADGFALLDLHEAVQLRELGWTGPILLL 79

Query: 84  YGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP----YALQVDTGFNRLGLS 138
            G        ++    L   +    QL         G   P      L++++G NRLG S
Sbjct: 80  EGFFDESDIALLASLRLTTAVHGEEQLRMLEIASRDGRLPPRSIDICLKLNSGMNRLGFS 139

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198
            +          +    +    +SH + AD       + Q   FR +     G + S+A+
Sbjct: 140 PESYGAAWRRLRDVAAVKSVTHMSHFSDADTQKG--VAEQAAIFRAVTRGLPG-QISIAN 196

Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIRKALAGELV 254
           S+  +   + H    R GI LYG       +      +Q   T  +RI+ ++  L G+ V
Sbjct: 197 SATTMRHADCHADWVRAGIMLYGAAPSGCAADLSGTGLQAAQTLTSRILGVQDLLPGQSV 256

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            YG     TR   I + A GYADGYP T S      +P         +   +   +G+++
Sbjct: 257 GYGSHYVATRRQRIGIVACGYADGYPRTSSSHADHFAP-------VRVGDRLTRTVGRVS 309

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           MDM   D+++     VG  ++++G  + +DDVA A+GT  Y+L+ 
Sbjct: 310 MDMLAVDLSECPEANVGSPVELWGRHVPIDDVAAAAGTIGYELMC 354


>gi|326565252|gb|EGE15437.1| alanine racemase [Moraxella catarrhalis 12P80B1]
          Length = 383

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 171/382 (44%), Gaps = 27/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M++     + I   AL +N   +   L    +  A+VK +AYG G +   PAL +     
Sbjct: 1   MNTMRSTSITIHPNALTHNLQIIKSQLDPTTKVLAMVKADAYGHGIDATVPALIH--ADG 58

Query: 60  FFVTSVEEGVKLRLYTP----QARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQ--LTFY 112
           F V  + E + ++        +  I ++ G     + K+  D +   +I    Q      
Sbjct: 59  FGVACLSEAMAVKQVLDGMNHKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALS 118

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            +       H   L+ +TG +RLG +    +    +  +   G   ++ SH ACADD S 
Sbjct: 119 HRPKQDQFCHTIWLKYNTGMSRLGFNDDHIITAAKSLADA--GYRLILTSHFACADDKSH 176

Query: 173 HVNSVQLERFRTLISHYKGIEA----SLASSSGILLGPNYHFQLTRPGISLYGG---TDK 225
            +N+ Q+ +F   ++  +        SL +S+GI    + H    R GI+LYG    TD+
Sbjct: 177 PLNAQQISKFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQ 236

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             K+  +   +T  A+++ I    AG+ + Y       +   IAV +IGY DGYP  + G
Sbjct: 237 SAKALNLMPAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG 296

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                + +           ++  I+G++ MDM M DI D L I +   + ++G    +D+
Sbjct: 297 AKVSVTDTSG-------NRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDE 348

Query: 346 VALASGTTNYDLLVRIGTRYAK 367
           VA+ +GT  Y+L+ R+ TR  +
Sbjct: 349 VAMCAGTIGYELMCRLTTRPKR 370


>gi|126642221|ref|YP_001085205.1| alanine racemase 1 [Acinetobacter baumannii ATCC 17978]
          Length = 325

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 23/339 (6%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KI 93
           +VK NAYG G +    AL  +    F V  ++EG+++R    +  + ++ G+    E  I
Sbjct: 1   MVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLEIRELGFEQPVTLIEGVFSEDEMPI 58

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
             +     VI    Q  +  K     ++      +++++G NRLG    E ++       
Sbjct: 59  AIEQKFECVIHHQQQFEWLIKHKQAYITQGLKVWVKLNSGMNRLGFKNPEIIEVIKTL-- 116

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
           K  G   ++  H A A D    +N  Q ++F  +      I AS  +S+ I   P  +F 
Sbjct: 117 KSEGFTCVLAMHFANA-DVDHPLNEQQKQQFLHVKETCDPILASCCNSAAIFKWPELNFD 175

Query: 212 LTRPGISLYGGTDKINK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
             RPGI LYG +   +K      ++ V+T  A II +    AGE V YG      +   I
Sbjct: 176 YVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIALNHIEAGEHVGYGSTFCAQQAMDI 235

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
           A+ +IGY DGYP                     I   + P++G+++MDM   D+T++  +
Sbjct: 236 AIVSIGYGDGYPRA-----------YVKQNFVAIDSKLCPVVGRVSMDMIAIDVTNT-QV 283

Query: 329 EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++G  ++++G    +DDVA A+GT  Y+LL R+ +R  +
Sbjct: 284 KLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSRPVR 322


>gi|303326566|ref|ZP_07357009.1| alanine racemase [Desulfovibrio sp. 3_1_syn3]
 gi|302864482|gb|EFL87413.1| alanine racemase [Desulfovibrio sp. 3_1_syn3]
          Length = 352

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 98/357 (27%), Positives = 155/357 (43%), Gaps = 29/357 (8%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF-VLYGIHPGQ 90
              VVK +AYG G   +A AL  AG + F V +V EGV LR       I  ++  I    
Sbjct: 7   IMPVVKSDAYGHGLLPVARALDGAGARRFAVGTVCEGVALREAGLGQTIVPLMGAISRED 66

Query: 91  EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150
            +     +L P+++    +   +           AL+ +TG NRLG S +E      +  
Sbjct: 67  WQAAAAHDLTPLLTDFEDIEKAAACCPADRPFRVALKCETGMNRLGFSAEELPAALESLR 126

Query: 151 NKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLIS----HYKGIEASLASSSGILLG 205
                   L +SHLACAD P  +     Q ERF ++ +     +  I  SL +S+G L  
Sbjct: 127 RFPRLAPVLALSHLACADMPGETAYTQAQAERFASMCAVLREAFPDIARSLGNSAGALGL 186

Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPMQ-----TVVTAEARIILIRKALAGELVSYGGQK 260
           P   ++  RPG++LYGG      +   +      V++  + ++ +R+  AG+ VSYG   
Sbjct: 187 PESRYEACRPGLALYGGNPFAGTAWETRGTGLEWVMSVSSPVLQVRQLKAGQSVSYGRIF 246

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
              +   +AV A GYA G+   LS                 I G  VP +G++ M M M 
Sbjct: 247 TAPQAMTVAVVAAGYATGFARALSNRIDL-----------LINGRRVPQVGRVCMSMLMA 295

Query: 321 DITDSLSIEVGDYIQIFG-------PDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           D++    +  GD   I G         +   ++A   GT  Y++L  +G+   + Y+
Sbjct: 296 DVSSLPDVRTGDTAWILGGPAAPGQRPVSAQEMADELGTIPYEILCLMGSTNPRVYS 352


>gi|283768393|ref|ZP_06341305.1| alanine racemase [Bulleidia extructa W1219]
 gi|283104785|gb|EFC06157.1| alanine racemase [Bulleidia extructa W1219]
          Length = 362

 Score =  327 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 165/371 (44%), Gaps = 25/371 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH   +   +IDL  +K+N   + +        A++K NAYG G  +++  L   G+   
Sbjct: 1   MHRQTWF--EIDLEKIKHNVQQVQSF-QQKEVMAILKANAYGCGDIQLSKQLEMIGIHFI 57

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V+SV+E + LR +  Q ++ VL G +    + +   ++     S   +  +++    G+
Sbjct: 58  GVSSVDEALVLRKHGFQGKLLVLGGTNIEDLETLIQNHITVTAYSEEWIEKFTQHDLTGL 117

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           S    L++DTG NR+G    +      +    +  Q+  I +H   + D      + Q +
Sbjct: 118 S--IHLKIDTGMNRIGFDNADEAKKALSHLLDQNAQVEGIFTHYYQS-DQDEKNTARQFK 174

Query: 181 RFRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
            F+ ++++           +S   L   +    + R GI+LYG +        +Q  ++ 
Sbjct: 175 DFKKIVTYLNHSFSYIHADNSDASLYFQDNFTNMVRLGIALYGYSTHH---TGLQEALSL 231

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
             + I+I+    GE + YG   +   + +IA   IGYADG      G             
Sbjct: 232 YTKPIMIKVVHPGETIGYGATYRAQEEEIIATLPIGYADGLLRINQGR------------ 279

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           K ++ G    I+G+I MD  M  +   +S+E  D ++IFG  I L+ +AL + T +Y+++
Sbjct: 280 KVYVNGQYGTIVGRICMDQCMVKLEQKISLE--DTVEIFGSHISLNQMALETNTISYEII 337

Query: 359 VRIGTRYAKFY 369
             I  R  + Y
Sbjct: 338 SLITPRVTRVY 348


>gi|330952099|gb|EGH52359.1| alanine racemase [Pseudomonas syringae Cit 7]
          Length = 308

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 90/318 (28%), Positives = 142/318 (44%), Gaps = 18/318 (5%)

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL 115
              F V  +EE ++LR    +A + +L G     E  +I + +L  V+ +V QL    + 
Sbjct: 3   ADGFAVACIEEALELRTAGIRAPVLLLEGFFEADELALIVEHDLWTVVHAVWQLEAIEQA 62

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
              G      L++DTG +R+GL   E                 +++SH + AD+ +S  +
Sbjct: 63  R-LGKPITVWLKLDTGMHRVGLHPHEYQAAYQRLLATGKVARIVLMSHFSRADELNSACS 121

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232
             QL  F T        E SL +S  +L  P      +RPGI LYG T        +  +
Sbjct: 122 DEQLAVFETFRKGLAA-ETSLKTSPAVLGWPQIPSDWSRPGIMLYGATPFDQVHPLADRL 180

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q V+T E++II +R+   GE V YG      R   I V A+GYADGYP            
Sbjct: 181 QPVMTLESKIISVRELPVGEPVGYGATFVCDRPLRIGVVAMGYADGYPRHA--------- 231

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
               G    I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  + T
Sbjct: 232 --PTGTPVQIDGQPSRLLGRVSMDMLSVDLTDVPQAGLGSRVELWGKQVLASEVAQRAET 289

Query: 353 TNYDLLVRIGTRYAKFYT 370
             Y++   +  R  + Y+
Sbjct: 290 IPYEIFCNL-RRVPRIYS 306


>gi|297564802|ref|YP_003683774.1| alanine racemase [Meiothermus silvanus DSM 9946]
 gi|296849251|gb|ADH62266.1| alanine racemase [Meiothermus silvanus DSM 9946]
          Length = 373

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 158/369 (42%), Gaps = 13/369 (3%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               L+++L +L +N   + + +  ++   +VK NAYG G   +   L   G     V +
Sbjct: 2   RPAWLEVNLDSLAHNVALLRSKAPASQLVGIVKANAYGHGAVWVGRELLRLGAWGLAVAT 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHP 123
           V EG +LRL   Q R+ ++  +HP Q +   +T+LI  +S++       +   + G    
Sbjct: 62  VSEGRELRLGGVQGRVLLMGSLHPDQAREALETDLIASLSTLEGAQALDAAARALGKIAE 121

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+ DTG  R+G   +EA             +++ + SH A A++ +     +QL  FR
Sbjct: 122 VHLEFDTGMGRVGFPWEEAQQVKEALEQFSHLKVTGLYSHFADAEE-NLEFTYMQLANFR 180

Query: 184 TLIS-HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
            +      G    LA+S+G+    +  F   RPGI+LYG    +     ++ +    A+ 
Sbjct: 181 RVREVWGPGYFCHLANSAGVFNFRDDSFDAIRPGIALYGLLPNL----GLKPIARLLAKP 236

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
            L+++   G  + Y G         IA   +GYADG P  +    +             I
Sbjct: 237 TLVKQLPPGRKIGYSGLYTTQDHEWIATLPVGYADGMPRLVYNRATVRLLQPSPEEGRLI 296

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI--FGPDIKLDDVALASGTTNYDLLVR 360
                P++G+I+MD     I   + ++    +    F P   L   A  +GT +Y+  VR
Sbjct: 297 ----CPVVGRISMDQITVRIPGPVDLDTVFEVVTADFDPGSSLWGWAEMTGTVSYEPAVR 352

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 353 LAARLPRVY 361


>gi|288818067|ref|YP_003432415.1| alanine racemase [Hydrogenobacter thermophilus TK-6]
 gi|288787467|dbj|BAI69214.1| alanine racemase [Hydrogenobacter thermophilus TK-6]
 gi|308751668|gb|ADO45151.1| alanine racemase [Hydrogenobacter thermophilus TK-6]
          Length = 338

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 102/361 (28%), Positives = 170/361 (47%), Gaps = 31/361 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67
           L+ID  A++ N  ++   SG  R  AVVK +AYG+G   I P L     V  F V  VEE
Sbjct: 6   LEIDADAIRQNIKAIRDFSGK-RVIAVVKADAYGIGAVHICPILEALDEVSSFAVACVEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G++LR    +  I +L G+  G+ K + +  L PV+S    L         G+   + ++
Sbjct: 65  GIELRKAGIKKDILILGGVFKGERKALIEYALTPVVSHEAHLRAIE-----GLDIGFHVK 119

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  RLG      +         K  ++  +++HL+   D     + +Q+E+F+ ++ 
Sbjct: 120 YDTGMGRLGFFEDVLI---------KDRRVKGVLTHLSSPLDKD--FSLMQIEKFKKIVK 168

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            Y  ++  L SS+GI+    +     R G+++YG     +    ++  ++ +ARI+ ++ 
Sbjct: 169 AYSNVDIHLESSAGIVYMVPFATH-VRIGLAMYGEKPAPDYPIELKRAISIKARILSVKY 227

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
                 VSY       R   + V A GYADG    LS +           G  + K   +
Sbjct: 228 LPPSYPVSYSRTFITDRKKKVGVVAFGYADGLAKALSNV-----------GCLYWKDKPL 276

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
            ILG ITMDMTM D+ D    +VGD +++ GP      +A  +GT  Y+++  + +R  +
Sbjct: 277 RILGNITMDMTMVDL-DDTDAQVGDEVEVVGPHQSFSHLAKLAGTIPYEIMCHLSSRIKR 335

Query: 368 F 368
            
Sbjct: 336 V 336


>gi|317407371|gb|EFV87336.1| catabolic alanine racemase [Achromobacter xylosoxidans C54]
          Length = 376

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 155/385 (40%), Gaps = 39/385 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55
             +   + ++AL +N  ++                   AV+K NAYG G E+        
Sbjct: 3   RPISATVSVSALAHNLAAVRRHLDQTAAAASGVAPSIWAVIKANAYGHGIEQAVAGFSK- 61

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
             Q   +  ++E V+ R       I +L G   P    I+   +L   +    QL   ++
Sbjct: 62  -AQGLAMLDLDEAVRCREAGWGGPILLLEGFFNPSDLDIVDRYHLSVTVHQREQLDMLAR 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPS 171
                      L++++G NRLG S          +     + +      ++H ACAD P 
Sbjct: 121 AR-LSRRVDIMLKLNSGMNRLGFSPAAYPAAHERALLLQQQGVIGSLGKMTHFACADGPQ 179

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILL------GPNYHFQLTRPGISLYGGTDK 225
                 QL  F ++         S+ +S+  L       G        RPGI LYG +  
Sbjct: 180 GIT--EQLAVFNSVTHKMAAGPISVCNSAATLRFAEIAVGSEAQAHWVRPGICLYGASPF 237

Query: 226 INK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            +    +  ++  ++  + II +++  AG+ V YG   +  R   + + A GYADGYP  
Sbjct: 238 ADAEAAAFGLKPAMSLRSEIIAVQELKAGDSVGYGALFRADRPMRVGIVACGYADGYPRH 297

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-I 341
            +            G    + G    ++G+++MDM + D+    +  VG  + ++G +  
Sbjct: 298 AA-----------TGTPVVVAGIRTRLVGRVSMDMLIVDLDPIPAAGVGAPVSLWGEEGP 346

Query: 342 KLDDVALASGTTNYDLLVRIGTRYA 366
            +D+VALA+GT  Y+LL  +  R  
Sbjct: 347 SVDEVALAAGTIGYELLCALAPRVP 371


>gi|254294303|ref|YP_003060326.1| alanine racemase [Hirschia baltica ATCC 49814]
 gi|254042834|gb|ACT59629.1| alanine racemase [Hirschia baltica ATCC 49814]
          Length = 370

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 190/365 (52%), Gaps = 22/365 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             + L  + NNW  +  LSG A T AVVK NAYGLG E++A  LY AG + FFV  ++E 
Sbjct: 17  AIVHLQNVVNNWKELARLSGAADTGAVVKANAYGLGAEQVASTLYEAGCRTFFVAHIDEA 76

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           +++R      A +F+ +GI       +   +++PV++S  Q+  +   +  G   P AL 
Sbjct: 77  IQIRKTLGNLALVFIFHGIQADNVDDVIAHDIVPVLNSTDQVELW---IRSGAPFPAALH 133

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NRLGL L+E  +           ++  ++SHLACAD P   +N+ QL  F  + +
Sbjct: 134 VDTGMNRLGLQLKELANVKKRL---PANRIGWVMSHLACADIPEHPMNARQLALFEKVAA 190

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            +   E SL++++GI LG  Y F LTRPGI LYGG  +     P   V T  A I+ I +
Sbjct: 191 IWPHAEKSLSNTAGICLGSKYTFDLTRPGIGLYGGYSRKGVFTPSHCV-TLSAPILSIIE 249

Query: 248 ALAG--ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
             A     + YG   K+T    +A  A+GYADG   +LS             G  F+ G 
Sbjct: 250 PDASNENTIGYGATSKVTNGQRLATIALGYADGALRSLSNS-----------GFVFVNGV 298

Query: 306 MVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
              I+G+++MD+   DIT++ +   V D ++  G    ++  A A+ T +Y+LL  +G R
Sbjct: 299 PCSIVGRVSMDLITIDITNAPTRTTVLDRVEFLGQHASVEIQARAASTASYELLTSMGER 358

Query: 365 YAKFY 369
             + Y
Sbjct: 359 IPRVY 363


>gi|33602247|ref|NP_889807.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50]
 gi|33576686|emb|CAE33763.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50]
          Length = 375

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/385 (23%), Positives = 150/385 (38%), Gaps = 40/385 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55
             +   I  +AL++N  ++     +             AV+K NAYG G E+        
Sbjct: 3   RPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVIKANAYGHGIEQAVAGFSA- 61

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
             Q   +  ++E V+ R       I +L G   P   +I+   +L   + +  Q      
Sbjct: 62  -AQGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLEIVDRYHLATTVHTREQFDML-A 119

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                      +++++G NRLG +      A           +      ++H ACAD P 
Sbjct: 120 HARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEYGVVGGIGKMTHFACADGPQ 179

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY------HFQLTRPGISLYGGTDK 225
                 Q+  F    +H  G   S+ +S+  L   +            RPGI LYG +  
Sbjct: 180 GVT--QQMNVFNGATAHLAGA-TSVCNSAATLRYADLAVGHDGQTHWVRPGICLYGASPF 236

Query: 226 INK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            +    +  +   +T  + +I ++   AG  V YG   +  R   I V A GYADGYP  
Sbjct: 237 ADAQAGAFGLIPAMTLRSELIAVQDIPAGAAVGYGAIFRADRPMRIGVVACGYADGYPRH 296

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-I 341
                         G    + G    ++G+++MDM M D+    +  +G  + ++G D  
Sbjct: 297 AG-----------TGTPLTVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVVLWGEDGP 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYA 366
            +D+VA A+GT  Y+LL  +  R  
Sbjct: 346 SVDEVAEAAGTIGYELLCALAPRVP 370


>gi|88856968|ref|ZP_01131618.1| alanine racemase [marine actinobacterium PHSC20C1]
 gi|88813785|gb|EAR23657.1| alanine racemase [marine actinobacterium PHSC20C1]
          Length = 366

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 160/376 (42%), Gaps = 33/376 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             I   A+ +N  ++ AL   A   AVVK N YG G  + A A  + G     V  + E 
Sbjct: 7   ATISTGAISHNIQTLRALVAPALVMAVVKANGYGHGAVESARAALDGGADWLGVADITEA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR     A +                  +   ISS+ Q    +++ +   +    L+V
Sbjct: 67  LALRAAGIDAPLLAWLHQPGAGFSEAVHARVDLGISSIAQ---LTEVAAASGTACVHLKV 123

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG +R G  L E   F   +   +L     +  I SHLA A    +  ++ Q++ F T 
Sbjct: 124 DTGLHRNGAFLDEWQQFFEAAVAHELAGRIHVRGIWSHLANA---GAEHDAKQIDLFSTA 180

Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVT 237
           ++       +     LA+S G +  P+  F L R GIS YG     +    +  +   +T
Sbjct: 181 VAMAHSVGLRPELRHLAASEGAIKHPDARFDLVRLGISAYGLAPADDVDVAALGLVPAMT 240

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A +I +++ +AG  VSYG       D+ + +  +GYADG P   +             
Sbjct: 241 LSAPVISVKRVVAGSGVSYGYDFYCENDTTLVLVPLGYADGVPRHATNR----------- 289

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   I G    I G++ MD  + ++ D+  + VGD   +FG         DD A A+G+ 
Sbjct: 290 GPVSINGARGQIAGRVAMDQIVVNMGDTP-VAVGDRAVLFGDSSTGVPSADDWAEAAGSI 348

Query: 354 NYDLLVRIGTRYAKFY 369
           NY+++ RIG R  + Y
Sbjct: 349 NYEIVTRIGQRVVRRY 364


>gi|126727196|ref|ZP_01743033.1| alanine racemase [Rhodobacterales bacterium HTCC2150]
 gi|126703624|gb|EBA02720.1| alanine racemase [Rhodobacterales bacterium HTCC2150]
          Length = 348

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 123/363 (33%), Positives = 185/363 (50%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           LKIDL A+  NW +++A+ +G+  TAAVVK +AYGLG   +A  L  AG   FFV + EE
Sbjct: 6   LKIDLNAIARNWRALDAMSAGDVETAAVVKADAYGLGIGPVAKILAKAGAHTFFVATAEE 65

Query: 68  GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G   R      A I V  G   G    I D +L+P+++S+ Q    ++ +    S  + +
Sbjct: 66  GAAARVALGNDAIINVFSGHMAGDTTTIRDFHLMPMVNSIEQ---LTRHLENLPSFQFGI 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G NRLG+   E       + +      +LI+SHLACADDP+   N+ QL +FR + 
Sbjct: 123 QLDSGMNRLGMEPHEWSAVASLALSS---DPTLIMSHLACADDPAHPQNADQLSQFRAIT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           +    +  SLA++ G LLGP +HF +TRPG+ LYGG    +     Q VV     +I  R
Sbjct: 180 AGL-DVPLSLAATGGTLLGPAFHFSMTRPGVGLYGGFPYSDA----QAVVRLSLPVIQTR 234

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +   GE V Y    +  R S IA  + GYADG    LS     ++               
Sbjct: 235 EVAVGETVGYSASWRAERPSKIATLSAGYADGITRALSNAAILYAGD-----------TP 283

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P+ G+++MD+   D++    +    ++ +  P   +D VA   GT  Y++L  +G RY 
Sbjct: 284 CPLAGRVSMDLLTVDVSHLDQMP--SHLDLLCPAQTVDQVAELGGTIGYEILTSLGHRYE 341

Query: 367 KFY 369
           + Y
Sbjct: 342 RQY 344


>gi|306820851|ref|ZP_07454474.1| alanine racemase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551123|gb|EFM39091.1| alanine racemase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 371

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 167/382 (43%), Gaps = 27/382 (7%)

Query: 1   MH-SNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           MH S+     +I L+ + +N +             AVVK +AYG G  +++  +    V 
Sbjct: 2   MHISSNRAVARISLSNILHNINEFKKCKSKKLNICAVVKADAYGHGSVEVSKFIEQY-VD 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            F V++ +E ++LR    +  I +L  +   + + +  +++   + ++   +  +K+   
Sbjct: 61  YFAVSTGDEAIELRNSQIKKPILILGYVFDNEVENLIRSDVEFTVYNIKIASTINKIAKK 120

Query: 119 G-VSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             +     +++DTG +R+G   Q+  ++      N    ++    SH + A++  + +N 
Sbjct: 121 NNLMAKVHIKLDTGMSRIGFLSQDNYVEEIKTVNNLSNIRIVGCFSHFSNAEETKNVINE 180

Query: 177 VQLERFRTLISHYK------GIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINK 228
           VQ E F+ +    +      GI+  +++S+      NY   + R GI +YG +  D  ++
Sbjct: 181 VQYELFQMMCKKIESENIDLGIK-HISNSAAS-EKNNYDLDMVRLGIGMYGYSYNDVKDE 238

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +  E+ I  I+    G  VSY G+  L  D  IA   IGYADG   +LS  + 
Sbjct: 239 KLDLKPAMKLESLISNIKLLKKGCKVSYSGKYTLEEDEWIATIPIGYADGISRSLSCKNF 298

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVA 347
           +              G     +G I MD  M  +     + +G  + IFG  +    ++A
Sbjct: 299 DV---------VLDNGIKGISVGNICMDQMMIKLP--QEVAIGTKVNIFGYDNDSGYNIA 347

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
             + T  Y+++  I  R  + Y
Sbjct: 348 KLADTIIYEIVCGINKRVKREY 369


>gi|33592350|ref|NP_879994.1| alanine racemase, catabolic [Bordetella pertussis Tohama I]
 gi|33571995|emb|CAE41517.1| alanine racemase, catabolic [Bordetella pertussis Tohama I]
 gi|332381767|gb|AEE66614.1| alanine racemase, catabolic [Bordetella pertussis CS]
          Length = 375

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 150/385 (38%), Gaps = 40/385 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55
             +   I  +AL++N  ++     +             AV+K NAYG G E+        
Sbjct: 3   RPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVIKANAYGHGIEQAVAGFSA- 61

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
             Q   +  ++E V+ R       I +L G   P   +I+   +L   + +  Q      
Sbjct: 62  -AQGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLEIVDRYHLATTVHTREQFDML-A 119

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                      +++++G NRLG +      A           +      ++H ACAD P 
Sbjct: 120 HARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEYGVVGGIGKMTHFACADGPQ 179

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY------HFQLTRPGISLYGGTDK 225
                 Q+  F    +H  G   S+ +S+  L   +            RPGI LYG +  
Sbjct: 180 GVT--QQMNVFNGATAHLAGA-TSVCNSAATLRYADLAVGHDGQTHWVRPGICLYGASPF 236

Query: 226 INK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            +    +  +   +T  + +I I+   AG  V YG   +  R   I V A GYADGYP  
Sbjct: 237 ADAQAGAFGLIPAMTLRSELIAIQDIPAGAAVGYGAIFRADRPMRIGVVACGYADGYPRH 296

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-I 341
                         G    + G    ++G+++MDM M D+    +  +G  + ++G D  
Sbjct: 297 AG-----------TGTPLTVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVVLWGEDGP 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYA 366
            +D+VA A+GT  Y+LL  +  R  
Sbjct: 346 SVDEVAEAAGTIGYELLCALAPRVP 370


>gi|110835047|ref|YP_693906.1| alanine racemase [Alcanivorax borkumensis SK2]
 gi|123149285|sp|Q0VMG4|ALR_ALCBS RecName: Full=Alanine racemase
 gi|110648158|emb|CAL17634.1| alanine racemase, catabolic [Alcanivorax borkumensis SK2]
          Length = 353

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 109/364 (29%), Positives = 167/364 (45%), Gaps = 22/364 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++I L AL+NN      L+G+A+  A+VK N YG G    A  + ++ V    V  ++E
Sbjct: 5   RVEIRLAALRNNALRAAELAGDAQVFAMVKANGYGHGLLLAAETMLDS-VSGLGVAVLDE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
              LR +     I V  G    +E +     +L  V+ S+ Q+     L++        L
Sbjct: 64  ARTLREHGIALPILVAEGFFDAEELEAAARLSLEVVVHSLWQVEL---LLANPCPVRIWL 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +V+ G NRLGL   EAL                ++SH ACAD      +  QL    ++ 
Sbjct: 121 KVNAGMNRLGLRPNEALSAAARLSQAGNA-PVGVMSHFACADMDEDIHSEKQLLLAGSVA 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARII 243
              + +  S ++S+ +L  P  H Q  RPGI LYG +    +      +Q      AR+I
Sbjct: 180 EQLQ-LPLSASNSAALLRYPRAHAQRVRPGIMLYGSSPFNWQTAAELGLQVSHRFSARLI 238

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            I    AGE V YG     +    I V A+GY DGYP                G    + 
Sbjct: 239 AINAVEAGESVGYGATWTASDPRQIGVVAVGYGDGYPRHA-----------PSGTPVAVN 287

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G +  ++G+++MDM   D+T  LS  VGD ++++G  + +DDVA A GT +Y+L  +I  
Sbjct: 288 GVVTTLVGRVSMDMITIDVTG-LSASVGDEVELWGDVVDVDDVARACGTISYELFCQITQ 346

Query: 364 RYAK 367
           R  +
Sbjct: 347 RPER 350


>gi|116626436|ref|YP_828592.1| alanine racemase [Candidatus Solibacter usitatus Ellin6076]
 gi|116229598|gb|ABJ88307.1| alanine racemase [Candidatus Solibacter usitatus Ellin6076]
          Length = 376

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 169/379 (44%), Gaps = 30/379 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + +    +  N+ ++  ++G     A VVK +AYG G  +++  L   G +   V+SVEE
Sbjct: 9   VLVSREQIARNYRNVRHVAGPRTEVAGVVKADAYGHGALEVSRVLLAEGARWLAVSSVEE 68

Query: 68  GVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
            V LR      ARI V+ G  P +   + D +L P + S+ Q+    +L +  G   PY 
Sbjct: 69  AVHLREGGIRDARILVMGGFLPYEANSVVDFDLTPAVHSLSQIRDIDRLAASAGKPLPYH 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++D+G  RLG     A +      + +   L  +++H A A D +S   + Q   F  +
Sbjct: 129 LKIDSGMGRLGTRAA-AAEILATLADSRHASLEGLMTHFASAADYTSPQTAEQTAYFEAI 187

Query: 186 ISHYK--GIEASLASSSGILL----GPNYHFQLTRPGISLYGGTDKINKSHPM-----QT 234
               +  G+ A    +S  +       +  + L R G +LYG         P      + 
Sbjct: 188 CGTLRAAGVTAPYLHTSSTIAIGYGRNSPAYTLVRAGHALYGYVSPARGEAPPQLLNVKP 247

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T +A+++ ++    G LV YGG  +  R   I +   GYADG    LS          
Sbjct: 248 ALTWKAKLLAVKDIPEGALVGYGGSFRAPRAMRIGILGAGYADGMFHRLSNR-------- 299

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              GK    G +  I+G ++MD+T  D++ + ++  GD + + G      +    +A  +
Sbjct: 300 ---GKVIADGKLTAIIGTVSMDLTTIDLSHTAALGPGDEVTLLGVEGDASLDAQQIAKVA 356

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y++L  I +R  + Y
Sbjct: 357 GTISYNILCSISSRVHRVY 375


>gi|289209091|ref|YP_003461157.1| alanine racemase [Thioalkalivibrio sp. K90mix]
 gi|288944722|gb|ADC72421.1| alanine racemase [Thioalkalivibrio sp. K90mix]
          Length = 367

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 99/380 (26%), Positives = 161/380 (42%), Gaps = 32/380 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M     ++L     AL++N      L+      +V+K   YG G    A AL +      
Sbjct: 1   MRRAASIQL--HPEALRHNLSVARRLAPAVPMWSVIKAEGYGHGLLWAAQALAD-DSDGL 57

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V+ V E   LR    +  + VL G     +     + +L PV+    QL          
Sbjct: 58  AVSQVCEARALRAAGFEGALLVLQGPRDLSEVHACTEFDLQPVLHHSAQLDHLEAA--SV 115

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-ISHLACADDPSSHVNSVQ 178
           V     ++++TG NRLG    +A            GQ  L  ++H+ACAD+P    N+ Q
Sbjct: 116 VLPVVWIKLNTGMNRLGFEPAQAPKVATRLQAAGHGQGGLHWMTHMACADEPEHPQNARQ 175

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQ-----LTRPGISLYGGTD--------K 225
           L+ F T ++ + G   S+A+S+ +  G             RPGI LYG            
Sbjct: 176 LDAFATTVAAFPG-HRSVANSAALFAGWGRGGAAAGEYWGRPGIMLYGAHPASVPAEHLP 234

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 ++  +T +A II  +    G  V YG          + + A+GYADGYP     
Sbjct: 235 EGPDGDLRPAMTVQAPIIATQPLAPGSTVGYGATWTADAPGRVGIVAMGYADGYPRHA-- 292

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                      G    + G + P++G+++MDM   D++   + +VGD + ++G  + ++ 
Sbjct: 293 ---------PSGTPVLVNGELCPLIGRVSMDMLAVDLSGVPAAQVGDRVTLWGEGLPVER 343

Query: 346 VALASGTTNYDLLVRIGTRY 365
           VA A+GT +Y+LL R+  R 
Sbjct: 344 VARAAGTISYELLTRVADRL 363


>gi|254304302|ref|ZP_04971660.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324494|gb|EDK89744.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 354

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 165/373 (44%), Gaps = 32/373 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L   GV+ F V ++
Sbjct: 2   RTWVEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    + +I +L      +        +   ISS+ QL F   L++  ++    
Sbjct: 62  EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQLHF---LVTNKLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERF 182
           L+ DTG  RLG  + EA         K    L  I SHL+ +D     +      Q+ +F
Sbjct: 119 LKFDTGMTRLGFEVDEAEKVI-EFCKKNNLNLVGIFSHLSDSDGNTMETKIFTLEQINKF 177

Query: 183 RTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + +I+        +++S+GI     +    L R GI +Y  T      + ++ + T ++R
Sbjct: 178 KKIINSLNLEYVHISNSAGITNFHDDILGNLVRLGIGMYSFTGNKKTPY-LKNIFTIKSR 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ I+K      VSYG    L  DS  AV  IGYADG    LS            GG   
Sbjct: 237 VLFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGYVL 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355
           I  +   I+G I MDMTM  I   +   I++GD + +   DI LD++            +
Sbjct: 286 INNHRCEIIGNICMDMTMIRIPKEIENSIKIGDEVTVINADI-LDNLN-----IPELCVW 339

Query: 356 DLLVRIGTRYAKF 368
           + +  IG R  + 
Sbjct: 340 EFMTGIGKRVKRI 352


>gi|46446265|ref|YP_007630.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 841

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 163/375 (43%), Gaps = 28/375 (7%)

Query: 11  IDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L A+KNN   +   ++   R   ++K  AYG    ++   L   GV    V+ VEEGV
Sbjct: 470 INLAAIKNNLDMIRTKITPETRLMIIIKAFAYGTDDIQLGKFLSAYGVDILGVSYVEEGV 529

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQV 128
            L+       IF +      +   +    L   +S V  ++  + +           L +
Sbjct: 530 ALKRAGITLPIFTINAAQ-YEIAKVVKWELEVGVSDVNFISALAQEAKKSSKCIKVHLHI 588

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTLIS 187
           +TG  R G   +EAL+      +     L  I++H ACADDP        Q++ F ++I 
Sbjct: 589 NTGMGRFGCRPEEALNLALLITSSSHLILEGIMTHFACADDPRHDSFTQEQIQCFDSVIE 648

Query: 188 HYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEA 240
             K           A+SSG +      + + R G++ YG  G+D + ++  ++  ++  +
Sbjct: 649 QLKRHCIQAKWTHAANSSGTIRFSLPQYNMVRIGLATYGLYGSDAVKQALDLRLALSLTS 708

Query: 241 RIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           RI+ I     GE +SYG    + ++   IAV  +GY DG     SG              
Sbjct: 709 RIVGINHCRKGETISYGRNYLIEKENQTIAVLPVGYFDGLHRHYSG-----------KAH 757

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTN 354
             I G   P++G I MD  M DITD     +GD + IFG D     +  +++A+   +  
Sbjct: 758 VLIHGKKAPMVGSICMDYMMVDITDIPHANIGDKVLIFGEDEYGHYLSPEELAMNGNSIV 817

Query: 355 YDLLVRIGTRYAKFY 369
           ++L+  +G R  + +
Sbjct: 818 HELITCLGPRIQRIF 832


>gi|33596460|ref|NP_884103.1| alanine racemase, catabolic [Bordetella parapertussis 12822]
 gi|33566229|emb|CAE37137.1| alanine racemase, catabolic [Bordetella parapertussis]
          Length = 375

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 150/385 (38%), Gaps = 40/385 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55
             +   I  +AL++N  ++     +             AV+K NAYG G E+        
Sbjct: 3   RPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVLKANAYGHGIEQAVAGFSA- 61

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114
             Q   +  ++E V+ R       I +L G   P   +I+   +L   + +  Q      
Sbjct: 62  -AQGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLEIVDRYHLATTVHTREQFDML-A 119

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                      +++++G NRLG +      A           +      ++H ACAD P 
Sbjct: 120 HARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEYGVVGGIGKMTHFACADGPQ 179

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY------HFQLTRPGISLYGGTDK 225
                 Q+  F    +H  G   S+ +S+  L   +            RPGI LYG +  
Sbjct: 180 GVT--QQMNVFNGATAHLAGA-TSVCNSAATLRYADLAVGHDGQTHWVRPGICLYGASPF 236

Query: 226 INK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            +    +  +   +T  + +I I+   AG  V YG   +  R   I V A GYADGYP  
Sbjct: 237 ADAQAGAFGLIPAMTLRSELIAIQDIPAGAAVGYGAIFRADRPMRIGVVACGYADGYPRH 296

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-I 341
                         G    + G    ++G+++MDM M D+    +  +G  + ++G D  
Sbjct: 297 AG-----------TGTPLTVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVVLWGEDGP 345

Query: 342 KLDDVALASGTTNYDLLVRIGTRYA 366
            +D+VA A+GT  Y+LL  +  R  
Sbjct: 346 SVDEVAEAAGTIGYELLCALAPRVP 370


>gi|296328108|ref|ZP_06870641.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154779|gb|EFG95563.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 354

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 104/373 (27%), Positives = 166/373 (44%), Gaps = 32/373 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L    V+ F V ++
Sbjct: 2   RTWIEIDKENLKYNVLKLKEIANNKEVLGVVKANAYGLGSIEIAKILKEVEVKLFGVANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    + +I +L      +        +   ISS+ QL F   L+S  ++    
Sbjct: 62  EEAIELQEAGIKDKILILGASFEDELVEATKRGVHVAISSMEQLQF---LVSKNLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + +A        N  L  L  I SHL+ +D     + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVDDAEKVIEYCKNNNL-NLVGIFSHLSDSDGNTIETKNFTLEQIEKF 177

Query: 183 RTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + + +        +++S+GI     +    L R GI +Y  T      + ++ + T +++
Sbjct: 178 KKIANSLNLEYIHISNSAGITNFHNDILGNLVRLGIGMYSFTGNKKTPY-LKNIFTIKSK 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I+ I+K      VSYG    L  DS  AV  IGYADG    LS            GG   
Sbjct: 237 ILFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGYVL 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355
           I  +   I+G I MDMTM  +   +   I++GD + +   DI LD++            +
Sbjct: 286 INNHRCEIIGNICMDMTMIRVPKEIENSIKIGDEVTVINADI-LDNLN-----IPELCVW 339

Query: 356 DLLVRIGTRYAKF 368
           + +  IG R  + 
Sbjct: 340 EFMTGIGRRVKRI 352


>gi|188996146|ref|YP_001930397.1| alanine racemase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931213|gb|ACD65843.1| alanine racemase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 324

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 92/340 (27%), Positives = 161/340 (47%), Gaps = 27/340 (7%)

Query: 35  VVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93
           +VK +AYG     ++  L     ++ F V +  EG +LR       I +L G+   + +I
Sbjct: 1   MVKADAYGHNAVLVSKYLQELDFIESFCVATPLEGKELRENGIFKNILILGGVLKEEIEI 60

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
           +   NLIPVIS   QL    KL     +    L+ DTG  RLG  L+            K
Sbjct: 61  LNQYNLIPVISDFNQLEIARKL----KNRKIHLKFDTGMRRLGFYLENVDKI---KPLLK 113

Query: 154 LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEASLASSSGILLGPNYHFQ 211
             ++  +++HL+ A D        Q++ F+ +++    K     + +S+G++   ++   
Sbjct: 114 EFEIEGVLTHLSSA-DTDREYTINQIKEFKEILNLLDVKPKYIHVQNSAGVVYECDF-CN 171

Query: 212 LTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
           + R G+++YG     +    ++ V++ +++II I+   +G+ VSY G     +   +A+ 
Sbjct: 172 VIRVGLAMYGEKPFESYPIELKQVMSVKSKIISIKDVKSGDRVSYNGSFVAKKPMKVAIV 231

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331
             GYADG P +LS                 + G   PILGKITMDMT+ D+++  +I +G
Sbjct: 232 PFGYADGLPRSLSNRWFF-----------LVNGKEAPILGKITMDMTIVDVSEIENINIG 280

Query: 332 DYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAK 367
           + + I G      I   D+A   GT +Y+++  I  R  +
Sbjct: 281 NEVVIVGESGNKRITFGDIANIVGTISYEIMCGISKRVVR 320


>gi|294814508|ref|ZP_06773151.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064]
 gi|326442897|ref|ZP_08217631.1| alanine racemase [Streptomyces clavuligerus ATCC 27064]
 gi|294327107|gb|EFG08750.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064]
          Length = 396

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 101/382 (26%), Positives = 163/382 (42%), Gaps = 29/382 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   R +IDL AL+ N  ++ A +  A   AVVK + YG G    A A   AG +     
Sbjct: 7   HTRARAEIDLAALRANVRALRARAPRAGLMAVVKADGYGHGAVPCARAAIAAGAEWIGTA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSH 122
           + +E + LR      RI        G  +   +  L   +S +       +   + G + 
Sbjct: 67  TPDEALALRAAGVPGRIMCWLWTPGGPWREGIEAGLDMSVSGLWALDEVVAAARATGRTA 126

Query: 123 PYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L+ DTG  R G         +     +  +   +++ + SH ACAD+P     + QL
Sbjct: 127 RIQLKADTGLGRNGCQPADWAALVAAARAAEAEGAVRITGLWSHFACADEPGHPSIAHQL 186

Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSH 230
             FR +++H +   A      +A+S   L  P  HF L RPGI++YG +        +  
Sbjct: 187 TAFREMVAHAEKEGADPEVRHIANSPATLTLPEAHFDLVRPGIAMYGVSPSPEIGTHQEL 246

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V+T  A + L+++   G  VSYG        + + +  +GYADG P   SG     
Sbjct: 247 GLRPVMTLAASVALVKRVPEGHGVSYGHHYTTPGATTLGLIPVGYADGVPRHASGR---- 302

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346
                  G   + G +    G+I MD  + D+     I  G    +FGP    +   +D 
Sbjct: 303 -------GPVLVGGRVRTAAGRIAMDQFVVDLGG-QEIPEGSEAVLFGPGTRGEPSAEDW 354

Query: 347 ALASGTTNYDLLVRIGTRYAKF 368
           A A+GT  Y+++ RIGTR  + 
Sbjct: 355 ARAAGTIAYEIVTRIGTRVPRV 376


>gi|212704878|ref|ZP_03313006.1| hypothetical protein DESPIG_02945 [Desulfovibrio piger ATCC 29098]
 gi|212671720|gb|EEB32203.1| hypothetical protein DESPIG_02945 [Desulfovibrio piger ATCC 29098]
          Length = 352

 Score =  325 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 104/357 (29%), Positives = 157/357 (43%), Gaps = 30/357 (8%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF-VLYGIHPG 89
           R   V+K +AYG G  ++A AL  AG + F V +V EG+ LR       I  +L   +  
Sbjct: 6   RLMPVIKSDAYGHGMTEVAHALDAAGARHFAVGTVAEGICLRQDGLAQTILPLLGCQNDE 65

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS 149
             +      L P+I+    L   + L S       A+++DTG +RLG S ++        
Sbjct: 66  DWQQANACGLTPLITGFEALEKAAALSSPADPWGVAIKLDTGMSRLGFSAEDIPALLERL 125

Query: 150 FNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLI----SHYKGIEASLASSSGILL 204
                 + SL +SH  CAD P        QLE+F  +     + Y  ++ SLA+S+G + 
Sbjct: 126 RACPGLKPSLAVSHFPCADMPEQEAFTRRQLEKFTAMTDSLRAAYPSLKRSLANSAGTMG 185

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSH-----PMQTVVTAEARIILIRKALAGELVSYGGQ 259
            P   F+L RPG SLYGG      +       ++ V+   A ++ +R    GE +SYG  
Sbjct: 186 WPESRFELCRPGFSLYGGNPFRGTAWEGRGAGLEPVMEVSAPLLQVRHLKPGEGISYGQT 245

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
               R+  +AV   GYA GYP   SG                + G   P +G+I M M M
Sbjct: 246 FIAPREMSVAVVGAGYATGYPRGASGRI-----------HVLVNGRRAPQVGRICMGMFM 294

Query: 320 FDITDSLSIEVGDYIQIFG-------PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D+T       GD   + G         + +D++A A G  +Y+LL  +G    + Y
Sbjct: 295 IDVTGLP-AHAGDLAWLLGGPAAPGETPVSIDELAEACGGFSYELLCLLGQGSPRVY 350


>gi|304440218|ref|ZP_07400108.1| alanine racemase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371267|gb|EFM24883.1| alanine racemase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 403

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 171/387 (44%), Gaps = 33/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           + + E  R   L++DL  L +N  ++   +S N+   AVVK NAYG G +KI   L   G
Sbjct: 16  LKNKELTRSCFLEVDLDKLIDNIRTIKRNISLNSSIIAVVKANAYGFGIKKIVDTLILEG 75

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           +  F V +++E +++R Y    +I +L        K   +  +   I +   +    K+ 
Sbjct: 76  IDYFAVATLQEALEIRKYHSDIKIMILGYTDRNLYKKAIENRVELSIYTKDDVLNLEKIA 135

Query: 117 -SCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
               ++    + ++TG NR+G    +  ++      N K  ++S   SH A A D +S  
Sbjct: 136 SEINLTAQINIPLETGMNRIGFVEDDKFIENMETIKNSKNIEVSGAFSHFAAA-DTNSCY 194

Query: 175 NSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              Q ++F  +    + I        +++S  I+    ++    RPGI +YG ++ + K 
Sbjct: 195 TRKQFDKFIRMTRIIENIGIEIPYKHISNSMAIMNFKEFNLDAVRPGIIMYGSSEGLKKE 254

Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++ + + +A+I  I+     E VSYG      RD+ +A   IGYADG    LS    
Sbjct: 255 GFDLKYIGSLKAKISNIKTIKKDEKVSYGLTYTCDRDTKVATLPIGYADGVVRILSNKID 314

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344
                        + G   P++G+I MD  M D+TD  + ++     I G     +I ++
Sbjct: 315 -----------VIVNGKRCPVIGRICMDQMMVDVTDV-NCDMDTICTIIGMDGDEEITIE 362

Query: 345 DVALASGTT--NYDLLVRIGTRYAKFY 369
           +VA  +G    +Y       +R  + Y
Sbjct: 363 EVAGLAGEIATSYS--THFSSRIPRVY 387


>gi|326333138|ref|ZP_08199387.1| alanine racemase [Nocardioidaceae bacterium Broad-1]
 gi|325949121|gb|EGD41212.1| alanine racemase [Nocardioidaceae bacterium Broad-1]
          Length = 394

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 154/385 (40%), Gaps = 32/385 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
               + IDL A+++N   +           VVK + YG G  +   A    G     V S
Sbjct: 12  RRAEIVIDLAAIRHNVSRLKEHL-RTPIMMVVKADGYGHGLVQAGRAAREGGADWLGVAS 70

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123
            +E + LR    + R+     +     + +   ++     +V  L  ++      G +  
Sbjct: 71  ADEALALRAAGDEGRLLAWLIMPSEPAEDLVAADIDVTAYTVADLEKFAAAGDALGRTPR 130

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLE 180
             L+VDTG +R G +  +  +    +   +     +++ I SH + +++ +   +++Q +
Sbjct: 131 VQLKVDTGLSRGGAAFADWGNLVARARILEAEGAIRVTGIWSHFSASENTADPASALQEK 190

Query: 181 RFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD------KINKS 229
            F   +     +  +     LA+S+G LL P+    L R GI+ YG              
Sbjct: 191 VFGEALAVAEEAGLRPEVRHLANSAGALLRPSARLDLVRVGIATYGIDPAPGVEGSPWDE 250

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +   +T  A + L+++  AG  VSY         + + +  +GYA+G         S 
Sbjct: 251 LGLVPAMTVRAELALVKQIEAGAGVSYNHTWVAEEPTTVGLIPVGYAEGIQRRAGNRAS- 309

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                      ++ G   P+ G + MD  + D+ D+  +E G  + ++G     +    D
Sbjct: 310 ----------VWVDGARRPVRGTVCMDQIVVDLGDTA-VEPGAEVVLWGTGADGEPTAQD 358

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
            A AS T  Y+++ RIG R  + Y 
Sbjct: 359 WAEASETIAYEVVTRIGGRMKRRYV 383


>gi|19703748|ref|NP_603310.1| alanine racemase, biosynthetic [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|23813647|sp|Q8RGA2|ALR_FUSNN RecName: Full=Alanine racemase
 gi|19713882|gb|AAL94609.1| Alanine racemase, biosynthetic [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 354

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 104/373 (27%), Positives = 167/373 (44%), Gaps = 32/373 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L    V+ F V ++
Sbjct: 2   RTWIEIDKENLKYNVLKLKEIANNKEILGVVKANAYGLGSIEIAKILKEVEVKLFGVANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    + +I +L      +        +   ISS+ QL F   L+S  ++    
Sbjct: 62  EEAIELQEAGIKDKILILGASFEDELVEATKRGVHVAISSMGQLQF---LVSKNLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + +A        N  L  L  I SHL+ +D     + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVDDAEKVIEYCKNNNL-NLVGIFSHLSDSDGNTIETKNFTLEQIEKF 177

Query: 183 RTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + +++        +++S+GI     +    L R GI +Y  T      + ++ + T +++
Sbjct: 178 KKIVNSLNLEYIHISNSAGITNFHNDILGNLVRLGIGMYSFTGNKKTPY-LKNIFTIKSK 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I+ I+K      VSYG    L  DS  AV  IGYADG    LS            GG   
Sbjct: 237 ILFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGYVL 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355
           I  +   I+G I MDMTM  +   +   I++GD + +   DI LD++            +
Sbjct: 286 INNHRCEIIGNICMDMTMIRVPKEIENSIKIGDEVTVINADI-LDNLN-----IPELCVW 339

Query: 356 DLLVRIGTRYAKF 368
           + +  IG R  + 
Sbjct: 340 EFMTGIGRRVKRI 352


>gi|237786300|ref|YP_002907005.1| Alanine racemase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759212|gb|ACR18462.1| Alanine racemase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 615

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 96/419 (22%), Positives = 153/419 (36%), Gaps = 65/419 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG------NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
            L + ID  AL +N  ++   +        A   AVVK N Y  G  + A      G   
Sbjct: 30  LLTMTIDRDALAHNAQAVARNAQLANPDHPAELMAVVKANGYNHGAVEAARVFLANGATQ 89

Query: 60  FFVTSVEEGVKLRLYTPQARIF--VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             V ++ E V+LR     A I   +         K   D  +   + ++  +       +
Sbjct: 90  LGVATITEAVELRQAGISAPILAWIWNADDHVSVKAALDYGIDLGVPTLAHIRAIVDEAT 149

Query: 118 CGVSH---------PYALQVDTGFNRLGLSLQEALDFTHNSFNK---KLGQLSLIISHLA 165
                            + VD+G +R G+S  +  D            +  ++   +HLA
Sbjct: 150 ERKRSQEDWEFVPPRVTVMVDSGLSRSGISPDQWDDALKELSAASSDSIIDVTGAFTHLA 209

Query: 166 CADDPSSHVNSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLY 220
            AD   +  N+ Q  +F   I   +  GI      + +S   +  P+  +Q+ RPG++LY
Sbjct: 210 SADAADNPSNNRQKAQFDAAIEELQAAGIPVRINHMCNSPASVTRPDMFYQMVRPGVALY 269

Query: 221 GGTDKINKSHPM-----------QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
           G       +              +  +T  A I+  R   AGE VSYGG      D++  
Sbjct: 270 GMDPLEEPADRSASTGSSLVSQLKPAMTLSAPIVAKRLVKAGESVSYGGTWTADVDTVTG 329

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-- 327
           V   GYADG P  LSG             +  I G   P +G++ MD  +  +  + S  
Sbjct: 330 VVPAGYADGIPRALSGRM-----------EVAINGRRYPQIGRVCMDQIVVALGPAGSKQ 378

Query: 328 ---IEVGDYIQIFGPD-------------IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
              +  GD   IFGP                  ++A   GT +Y++L    TR  + Y 
Sbjct: 379 ASAVHQGDEAVIFGPPGECIGSDGKPASLPTATELAETLGTIHYEILTSPHTRVHRRYV 437


>gi|326562891|gb|EGE13178.1| alanine racemase [Moraxella catarrhalis 46P47B1]
 gi|326563668|gb|EGE13920.1| alanine racemase [Moraxella catarrhalis 103P14B1]
 gi|326573276|gb|EGE23244.1| alanine racemase [Moraxella catarrhalis 101P30B1]
          Length = 383

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 171/382 (44%), Gaps = 27/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M++     + I   AL +N   +   L    +  A+VK +AYG G +   PAL +     
Sbjct: 1   MNTMRSTSITIHPNALTHNLQIIKSQLDRTTKVLAMVKADAYGHGIDATVPALIH--ADG 58

Query: 60  FFVTSVEEGVKLRLYTP----QARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQ--LTFY 112
           F V  + E + ++        +  I ++ G     + K+  D +   +I    Q      
Sbjct: 59  FGVACLSEAMAVKQVLDGMNHKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALS 118

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            +       H   L+ +TG +RLG +    +    +  +   G   ++ SH ACADD S 
Sbjct: 119 HRPKQDQFCHTIWLKYNTGMSRLGFNDDHIITAAKSLADA--GYRLILTSHFACADDKSH 176

Query: 173 HVNSVQLERFRTLISHYKGIEA----SLASSSGILLGPNYHFQLTRPGISLYGG---TDK 225
            +N+ Q+ +F   ++  +        SL +S+GI    + H    R GI+LYG    TD+
Sbjct: 177 PLNAQQISKFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQ 236

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             K+  +   +T  A+++ I    AG+ + Y       +   IAV +IGY DGYP  + G
Sbjct: 237 SAKALNLMPAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG 296

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                + +           ++  I+G++ MDM M DI D L I +   + ++G    +D+
Sbjct: 297 AKVSVTDTSG-------NRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDE 348

Query: 346 VALASGTTNYDLLVRIGTRYAK 367
           VA+ +GT  Y+L+ R+ TR  +
Sbjct: 349 VAMCAGTIGYELMCRLTTRPKR 370


>gi|86134588|ref|ZP_01053170.1| Alanine racemase [Polaribacter sp. MED152]
 gi|85821451|gb|EAQ42598.1| Alanine racemase [Polaribacter sp. MED152]
          Length = 366

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 149/374 (39%), Gaps = 22/374 (5%)

Query: 3   SNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +N    L+ID  AL +N +     L+ N +  AVVK   YG     +A  L +  V  F 
Sbjct: 2   NNHVSVLEIDSKALVHNLNYFKNKLNQNTKILAVVKAFGYGSDGVLVADFLKDK-VDYFA 60

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--G 119
           V    EG+ LR    +  I VL+       + I D  L P + +      + +L      
Sbjct: 61  VAYAHEGIALREANIKTPILVLHP-QIATLQDIIDYRLEPNLYNFKIFHAFLELADTIPL 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQ 178
           +++P  ++ +TG NRLG    +              ++  + SHLA ++D       + Q
Sbjct: 120 MNYPVHIKFNTGLNRLGFWHTDIPKIISELKETNHIKVQSLFSHLAASEDLEEKDFTNNQ 179

Query: 179 LERFRTLISHY-KGIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           L  F  ++  + K +       + ++SG++      F + R GI LYG  +   ++  ++
Sbjct: 180 LNSFAYIVQQFYKHLSYEPMLHILNTSGVVNYAKAQFDMVRVGIGLYGFGNDDEETKQLK 239

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
                ++ I  I     GE V Y       + S  A   +G+ADG    L          
Sbjct: 240 NTHNLKSIISQIHLIEPGETVGYNRAFVAKKPSKSATIPVGHADGLSRKLGN-------- 291

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
               G   I      I+G + MDM M D+T       GD + IF     L  +A AS T 
Sbjct: 292 --EAGYVLINNQKAKIIGNVCMDMIMVDVTKI-DCNEGDEVIIFNSQDMLKHIADASETI 348

Query: 354 NYDLLVRIGTRYAK 367
            Y+ L  I  R  K
Sbjct: 349 VYETLTSISPRVKK 362


>gi|317507715|ref|ZP_07965420.1| alanine racemase [Segniliparus rugosus ATCC BAA-974]
 gi|316253968|gb|EFV13333.1| alanine racemase [Segniliparus rugosus ATCC BAA-974]
          Length = 386

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 102/390 (26%), Positives = 169/390 (43%), Gaps = 36/390 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M S   ++  +D +AL +N   +   S  A+  AV+K NAYG G   +A  +  AG    
Sbjct: 1   MVSAPAVQATVDHSALAHNVRLLIQASAPAKVIAVLKANAYGHGAVPVARTVLAAGAAQI 60

Query: 61  FVTSVEEGVKLRLYTPQARIFV-LYGIHPG----QEKIIFDTNLIPVISSVPQLTF-YSK 114
            V +++E  +LR    +A I   L+   P              +   +S+  QL      
Sbjct: 61  GVATLDEAFELRAGGIEAPIIAWLHAFDPSEAVAVFAEAVALGIELGVSTSTQLRAVAEA 120

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPS 171
            M        A++VDTG NR G + ++      +  N +     ++  + SHLA AD P 
Sbjct: 121 AMRADEPAVVAVKVDTGLNRGGFAREDWRKAFADLANAEAAGAVRVRAVFSHLANADRPE 180

Query: 172 SHVNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLT------RPGISLY 220
              N+ Q    R  ++  +          LA+S  +L  P             RPG+++Y
Sbjct: 181 YRTNAEQASGLRDAVALARKAGLSPQLVHLANSPAVLTRPRALVDGVPAFNATRPGVAVY 240

Query: 221 GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           G +    +   +   +T  AR+ L+++  AG+ VSYG       D+ +A+  IGYADG P
Sbjct: 241 GLSPIAGRDFGLIPAMTLTARVGLVKRIQAGDGVSYGHDFVAPTDTTLALLPIGYADGLP 300

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP 339
            +L+G             +  I G   P +G++ MD  + D+      +  GD   +FG 
Sbjct: 301 RSLAGKF-----------EVVIGGRRYPGVGRVCMDQVLVDLGPGRPRVREGDIATLFGS 349

Query: 340 ----DIKLDDVALASGTTNYDLLVRIGTRY 365
               +  +DD A A+GT NY+++ +I  R 
Sbjct: 350 GKDGEQTVDDWAKAAGTINYEIVTQIRGRV 379


>gi|93006286|ref|YP_580723.1| alanine racemase [Psychrobacter cryohalolentis K5]
 gi|92393964|gb|ABE75239.1| alanine racemase [Psychrobacter cryohalolentis K5]
          Length = 368

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 169/374 (45%), Gaps = 25/374 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I   A+ +N + + AL+  +   A+VK NAYG G   + PAL         V ++ E 
Sbjct: 4   ITIKPAAITHNLNQVKALAPKSNVLAMVKANAYGHGVAAVLPALQQ--ADGIGVATLREA 61

Query: 69  VKLRLYTPQARI-FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHPYA 125
           ++ R       I  +       + +   + ++  VI   PQL +  + +      +    
Sbjct: 62  LEARQLGWDKTIGLIEGAFTVDEWQQAIEHDISCVIHHAPQLDWALEQIPPVDSATRMVW 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++ +TG NRLG + Q       +  +   G   ++ +H A AD+    +N++Q++RF  +
Sbjct: 122 IKYNTGMNRLGFNNQTLSSAAKSLHDA--GYQLILTTHFANADNQDHPLNAIQIQRFNDM 179

Query: 186 ISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           +S  +      I+ SL +S+GI+  P +H    RPGI LYG    I++S      Q  + 
Sbjct: 180 LSTLRQTVSTNIKGSLCNSAGIVNFPEHHHDWVRPGIMLYGSAPVIDQSAYTLNLQPAME 239

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A+II ++   AG+ + YG +    +D   A+ +IGY DGYP  ++G            
Sbjct: 240 FSAQIIALQTVQAGDAIGYGSRWIAQQDVKTALVSIGYGDGYPRVVNGDAYVSVIDA--- 296

Query: 298 GKGFIKGYM--VPILGKITMDMTMFDITDSLSIEV-GDYIQIFGPDIKLDDVALASGTTN 354
               +        ++G++ MDM + D++           + ++G    +D+VA  + T  
Sbjct: 297 ----VNQQRYSCAVIGRVAMDMIVIDVSAVPESSALNSKVILWGDAPHVDEVATHADTIG 352

Query: 355 YDLLVRIGTRYAKF 368
           Y+LL R+  R  + 
Sbjct: 353 YELLCRLSVRPNRI 366


>gi|289178366|gb|ADC85612.1| Alanine racemase [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 476

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/408 (25%), Positives = 171/408 (41%), Gaps = 46/408 (11%)

Query: 6   FLRLKIDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             ++ +DL AL++N   +    N   G      VVK +AYG G    A A    G     
Sbjct: 52  PAQVIVDLAALRDNMRHLVDITNREGGPTEVMGVVKADAYGHGLVPSALAALAGGATWLG 111

Query: 62  VTSVEEGVKLRLYTP---QARIFVLYGIH-----PGQEKIIFDTNLIPVISSVPQLTFYS 113
           V    E + LR       +AR  VL  ++     P  + I  D +L     +  Q     
Sbjct: 112 VAQAREALALRNAGIGVDRAR--VLTWVNNPLHAPYDDLIAADVDLSVATLTAIQ-KIAE 168

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDP 170
              + G      ++VDTGF R G +L +   A+D      ++ + ++    SHLA AD P
Sbjct: 169 AARAVGKPARVHIKVDTGFGRNGFTLAQIDSAIDLLLPLVDEGVFEIVGQWSHLAVADAP 228

Query: 171 S----SHVNSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYG 221
           +          Q+  F    S  H +GIE     LA+++  L  P  H+ L RPG++LYG
Sbjct: 229 AVGEFVEKTDEQIRVFEEFTSRLHARGIEPRIRHLANTAATLSRPEIHYDLVRPGVALYG 288

Query: 222 GTDKINKSHPMQ----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
                    P +      +T +A++  ++   AGE +SYG        +  A+  +GYAD
Sbjct: 289 YEADPAMGTPSKYELRPAMTLQAQLSSVKNVGAGEGLSYGRVYVTDEPTSAAIVPVGYAD 348

Query: 278 GYPLTLSGLDSEHSPSVFL-GGKGFI---KGYMV-PILGKITMDMTMFDITDSLS---IE 329
           G   + SG +   S  V   G    +    G  +  + G++ MD  + D+        + 
Sbjct: 349 GIHRSASGFNEAGSKHVNKPGAPVRVMTRDGARIFHVSGRVCMDQFILDLHGDAENMGVH 408

Query: 330 VGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +GD +++FGP       +   DD A A+ T +Y++   +  R  + Y 
Sbjct: 409 IGDTVELFGPGRGEDYLEPTADDWARAADTISYEIFTCLRNRVPRLYA 456


>gi|281357855|ref|ZP_06244341.1| alanine racemase [Victivallis vadensis ATCC BAA-548]
 gi|281315802|gb|EFA99829.1| alanine racemase [Victivallis vadensis ATCC BAA-548]
          Length = 377

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 107/384 (27%), Positives = 175/384 (45%), Gaps = 27/384 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+    + L++DL  L +N+H +       R  AV+K NAYGLG + +A  +  AG   F
Sbjct: 1   MNLESRVNLEVDLKKLADNFHEIRRRVSPCRLMAVLKANAYGLGVQPVAEVVKQAGAAAF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119
            V  + E V+L        + +L  + P +     +  +I  ++ +       ++ +  G
Sbjct: 61  GVAEINEAVELVPLG--LPVQILGNLLPDEIAPAVEYGVICPLNDLEMAKKISAEAVRQG 118

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            +   A+ VD+G  RLG+   EA +           +L  I SH + A       +  QL
Sbjct: 119 KTATGAVTVDSGMGRLGMPAAEAAEQILAMRGLPNLKLDGIYSHFSSAFMRYDDYSLGQL 178

Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNY---HFQLTRPGISLYGGTD-KINKSH 230
             F+TL++  KG         +A+S  +   P+     F L R GI++YG  D ++++S 
Sbjct: 179 ASFKTLLAELKGAGLEFPNVHMAASDALNNFPDSTRPPFTLARCGINMYGYYDNEVHQSM 238

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +  VV  + R+  +R   AG  + YG   +L +D+ +   A GYADG PL LS      
Sbjct: 239 RLAPVVELKTRLAAVRMLAAGSCIGYGRMHRLQKDTRVGTIAAGYADGLPLALSNR---- 294

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                  G   + G + P+LG+I+MD T   + ++   + GD +   G      + L+D 
Sbjct: 295 -------GYVLVNGVLCPVLGRISMDYTTISLENAPEAQPGDEVVCIGGQDGRFVSLEDW 347

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
           A   GT  YDLL   GTR  + Y 
Sbjct: 348 AQLKGTHVYDLLCSFGTRVRRRYV 371


>gi|124516677|gb|EAY58185.1| Alanine racemase [Leptospirillum rubarum]
          Length = 406

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/392 (25%), Positives = 163/392 (41%), Gaps = 40/392 (10%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              RL +DL AL NN   + +   ++     VVK +AYG G   +A      GV    V 
Sbjct: 19  SRSRLIVDLDALSNNLEWIRSRLPSSIEILPVVKADAYGHGMLPVAKNFVEKGVPALGVM 78

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            +EEGV+LR     A++ V+ GI P + +      L PVI +   L     L S  +   
Sbjct: 79  GLEEGVRLRKAEISAKVIVMGGILPSELEECIAFGLTPVIHNCELLEAALDL-SRKMEVH 137

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+ D G  RLG   ++          +   ++  ++SH    +       S Q+  F 
Sbjct: 138 IHLKFDVGMGRLGFLPEDISWVCDKIGRESSLRIEGVMSHFPEGE--KIAETSRQIGIFG 195

Query: 184 TLISHY--------KGIEASLASSSGILLGPNYHFQ------------LTRPGISLYGGT 223
            ++           +     LA+S+  L G                    RPGI LYG  
Sbjct: 196 CMVDELWDRGALCDRPFVIHLANSAAFLSGQYSVADKKNRAWEKYARYWIRPGILLYGIP 255

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                   ++  +  +AR+I ++    G  +SYGG   L+R + + V  +GYADG P  L
Sbjct: 256 VDPLPLPGLKPAMEIQARLISLKTLSEGSRISYGGTLSLSRKTRVGVLGMGYADGLPREL 315

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-- 340
           S             G     G   P LG++ MDM M D+TD+   + +GD++ + G    
Sbjct: 316 SNW-----------GWASRMGQKFPFLGRVCMDMVMVDVTDAESPVCLGDWMTVLGNGED 364

Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
             +   ++A    +  Y+++ R+G R  +FY+
Sbjct: 365 SSMSAWEIAGRIRSIPYEIVCRMGNRSPRFYS 396


>gi|326576906|gb|EGE26812.1| alanine racemase [Moraxella catarrhalis O35E]
          Length = 380

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 170/382 (44%), Gaps = 30/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S     + I   AL +N   +   L    +  A+VK +AYG G +   PAL +     
Sbjct: 1   MRSTS---ITIHPNALTHNLQIIKSQLDPTTKVLAMVKADAYGHGIDATVPALIH--ADG 55

Query: 60  FFVTSVEEGVKLRLYTP----QARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQ--LTFY 112
           F V  + E + ++        +  I ++ G     + K+  D +   +I    Q      
Sbjct: 56  FGVACLSEAMAVKQVLDGMNHKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALS 115

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            +       H   L+ +TG +RLG +    +    +  +   G   ++ SH ACADD S 
Sbjct: 116 HRPKQDQFCHTIWLKYNTGMSRLGFNDDHIITAAKSLADA--GYRLILTSHFACADDKSH 173

Query: 173 HVNSVQLERFRTLISHYKGIEA----SLASSSGILLGPNYHFQLTRPGISLYGG---TDK 225
            +N+ Q+ +F   ++  +        SL +S+GI    + H    R GI+LYG    TD+
Sbjct: 174 PLNAQQISKFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQ 233

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             K+  +   +T  A+++ I    AG+ + Y       +   IAV +IGY DGYP  + G
Sbjct: 234 SAKALNLMPAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG 293

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                + +           ++  I+G++ MDM M DI D L I +   + ++G    +D+
Sbjct: 294 AKVSVTDTSG-------NRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAK 367
           VA+ +GT  Y+L+ R+ TR  +
Sbjct: 346 VAMCAGTIGYELMCRLTTRPKR 367


>gi|71065518|ref|YP_264245.1| alanine racemase [Psychrobacter arcticus 273-4]
 gi|71038503|gb|AAZ18811.1| alanine racemase [Psychrobacter arcticus 273-4]
          Length = 368

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 178/374 (47%), Gaps = 27/374 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I   A+ +N + +   +   +  A+VK NAYG G   + PAL         V ++ E 
Sbjct: 4   ITIKPAAITHNLNQVKKFAPETKVLAMVKANAYGHGVAAVLPALQQ--ANGVGVATLIEA 61

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKL---MSCGVSHPY 124
           ++ R       I ++ G     E +   + ++  VI   PQLT+  +    + C      
Sbjct: 62  LEARQLGWDKTIALIEGAFTVDEWRQAIEHDISCVIHHAPQLTWALEHTPPVHCATRV-V 120

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+ +TG NRLG +    +         + G   ++ +H A ADD +  +N++Q++RF  
Sbjct: 121 WLKYNTGMNRLGFNADGVIVAAQRL--HEAGYQLILTTHFANADDQTHPLNAMQIQRFND 178

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVV 236
           ++S  +      ++ SL +S+GI+  P +H    RPGI LYG T  I++S     +Q  +
Sbjct: 179 MLSTLQETVSADVQGSLCNSAGIVNFPTHHHDWVRPGIMLYGSTPVIDQSAYELDLQAAM 238

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              A+II ++   AGE + YG +    +D+  A+ ++GY DGYP  ++            
Sbjct: 239 EFSAQIIALQTVNAGEGIGYGSRWLAQQDTRTALVSVGYGDGYPRVIADKTYVTVIDT-- 296

Query: 297 GGKGFIKGYMVP--ILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTT 353
                I     P  ++G++ MDM + D+++      +   + ++G   ++D+VA  +GT 
Sbjct: 297 -----INHQSYPCTVIGRVAMDMIVIDVSNVPEGTALNSKVILWGNAPRVDEVATHAGTI 351

Query: 354 NYDLLVRIGTRYAK 367
           +Y+LL R+  R  +
Sbjct: 352 SYELLCRLSLRPQR 365


>gi|15830939|ref|NP_309712.1| alanine racemase [Escherichia coli O157:H7 str. Sakai]
 gi|13361149|dbj|BAB35108.1| alanine racemase 2 [Escherichia coli O157:H7 str. Sakai]
          Length = 329

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 92/336 (27%), Positives = 141/336 (41%), Gaps = 24/336 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  ++D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + II ++   AGE V YGG+     +  I + A GYADGYP                G 
Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
              + G     +G ++MDM   D+T     ++G  +
Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQRDIGTPV 320


>gi|290981363|ref|XP_002673400.1| tentative alanine racemase [Naegleria gruberi]
 gi|284086983|gb|EFC40656.1| tentative alanine racemase [Naegleria gruberi]
          Length = 421

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 160/400 (40%), Gaps = 49/400 (12%)

Query: 9   LKIDLTALKNNWHS----MNALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVT 63
             ++L  +  N  +        + +     VVK NAYG G   +   LY    ++ F V 
Sbjct: 32  AIVNLRNITENVENTVNFAKNYNQDIHVMPVVKANAYGHGDTPVVRELYNELSIKQFAVN 91

Query: 64  SVEEGVKLRLYTPQ----ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL--TFYSKLMS 117
            V+EGVK+R    +      I VL    P + K     NL P IS    +  T + +   
Sbjct: 92  RVKEGVKIRSNLSKENANIEILVLGYAIPEEVKECVTYNLTPTISGSRLIVETLFRECEK 151

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-----GQLSLIISHLACADDPSS 172
              +    L+VDTG  R G   ++  +F        +      +++ + +H + AD+ S 
Sbjct: 152 QDKTINVHLKVDTGMGRFGAHPEKLENFLRWFTINPMKLYNRIKITGVFTHFSSADEMSP 211

Query: 173 HVNSVQLERFRTLISHY----------KGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
                Q  +F  +              K +     +S+G L  P  H  + RPGIS+YG 
Sbjct: 212 DYTREQFYKFMEVKKMIENHQVSRVFEKPLTYHCCNSAGTLFFPEMHMDMIRPGISIYGL 271

Query: 223 TDKINKSHPM-----QTVVTAEARIILIRKALAGELVSYGGQKK-LTRDSLIAVAAIGYA 276
           +   ++  P      +  +T  + +  ++K   G  VSYG        D  +A+  +GY 
Sbjct: 272 SPSNDRDDPRLPFKLKPALTVVSHLGRVQKFPKGSPVSYGNTYTVAEDDETLALVPVGYG 331

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYI 334
           DGY    +G                I+G   PI+G+I MD  +  I+      +++ D +
Sbjct: 332 DGYKRINTG-----------KAHVLIRGEECPIVGRICMDQFVVKISPTVVDRVKINDEV 380

Query: 335 QIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            + G     ++  + V+  S T NY+++  +  R  + Y 
Sbjct: 381 VLIGEQDGKEVTCEMVSHWSNTINYEVVTALLPRLKRVYV 420


>gi|315660233|ref|ZP_07913088.1| alanine racemase [Staphylococcus lugdunensis M23590]
 gi|315494660|gb|EFU83000.1| alanine racemase [Staphylococcus lugdunensis M23590]
          Length = 399

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 159/382 (41%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ NN+     L  N     V+K N YGLG  +IA  L + G   
Sbjct: 19  SDKYYRNTYINVDLAAINNNYRQFTQLHDNKTVIPVIKANGYGLGSVQIAQYLVDHGASF 78

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V +++E ++LR++  +A+I +L  I            +   + S   L+   K ++  
Sbjct: 79  FAVATLDEAIELRMHGIKAQILILGVIPIEDINKAIQHRVAITVPSKSWLSSAIKAINDD 138

Query: 120 --VSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                   +++DTG  RLG+  Q E     H     +      + +H ACAD+P      
Sbjct: 139 NEKRLWLHIKLDTGMGRLGIKNQAEYHQTIHLIEQHEHLVFEGVYTHFACADEPGDSA-Q 197

Query: 177 VQLERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231
            Q + F+T ++           +S+G L+         R GISLYG              
Sbjct: 198 QQYQCFKTWVTSTDMPRYVHAQNSAGALMIDADICNAVRLGISLYGYYPSEYVKEETDIE 257

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +Q  V    +I+  ++   GE VSYG          I +  IGYADGY   + G      
Sbjct: 258 LQPSVELMTQIVQTKELQPGESVSYGSTYTAQSPIKIGIIPIGYADGYLRIMQGHF---- 313

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     +KG    ++G++ MD T+  I D   I  GD + +          +D +A
Sbjct: 314 --------VNVKGQQCEVIGRVCMDQTIIKIND--DIVEGDEVCVISKQQDSIQSVDAIA 363

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L  +G R  + Y
Sbjct: 364 KQQKTINYEVLCNLGRRLPRIY 385


>gi|120608956|ref|YP_968634.1| alanine racemase [Acidovorax citrulli AAC00-1]
 gi|166919543|sp|A1TIS2|ALR_ACIAC RecName: Full=Alanine racemase
 gi|120587420|gb|ABM30860.1| alanine racemase [Acidovorax citrulli AAC00-1]
          Length = 369

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 151/380 (39%), Gaps = 35/380 (9%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++  I   AL+ N     A + +AR  AVVK NAYG G E+    L   G   F +  
Sbjct: 3   RPIQATIHTAALQQNLARARAAAPDARVWAVVKANAYGHGIERAFEGLR--GADGFALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R    +  I +L G+  P   ++    +L   +    Q+ + S   +    H 
Sbjct: 61  LGEAERVRQLGWRGPILLLEGVFEPRDLELCSRLSLWHAVHCDEQIDWLSAHKTHA-PHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG                        ++H + AD P     + Q++ F 
Sbjct: 120 VFLKMNSGMNRLGFPPARYRAAWARLNALPQVDEISFMTHFSDADGPRGI--AHQIDAFC 177

Query: 184 TLISHYKGIEASLASSSGILLGP----NYHFQLTRPGISLYGG----TDKINKSHPMQTV 235
           T      G E ++++S+  L              R GI LYG      +       +   
Sbjct: 178 TATQDLPG-ERTVSNSAATLRHAGGDARVRGDWVRAGIVLYGSAADHPEHTAAHWGLAPT 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  ARII  ++  AG+ V YG      R   I V A GYADGYP               
Sbjct: 237 MTLSARIIGTQQLQAGDTVGYGSSFTADRPMTIGVVACGYADGYPRHA-----------P 285

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITD----SLSIEVGDYIQIFGPD-----IKLDDV 346
            G    + G     +G+++MDM   D+T      +   VG    ++G       + +D+V
Sbjct: 286 TGTPVLVNGVRTRTVGRVSMDMITVDLTPLHEAGVEAGVGSEATLWGRASCGAVLCIDEV 345

Query: 347 ALASGTTNYDLLVRIGTRYA 366
           A A+GT  Y+L+  +  R  
Sbjct: 346 AQAAGTVGYELMCALAPRVP 365


>gi|330817458|ref|YP_004361163.1| Alanine racemase [Burkholderia gladioli BSR3]
 gi|327369851|gb|AEA61207.1| Alanine racemase [Burkholderia gladioli BSR3]
          Length = 356

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 146/348 (41%), Gaps = 22/348 (6%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83
              +  ++  AVVK NAYG G  +  P L +     F +  +EE VKLR       I +L
Sbjct: 22  RRFAPRSKVWAVVKANAYGHGLARAFPGLRS--TDGFGLLDLEEAVKLRELGWAGPILLL 79

Query: 84  YGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142
            G     +  + D  +L   + +  QL    +           L++++G NRLG +  + 
Sbjct: 80  EGFFRSTDVDVIDRYSLTTTVHNDDQLRML-ETARLSKPINIQLKMNSGMNRLGYAPDKY 138

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGI 202
                 +          +++H A AD      +  Q+  F        G   SLA+S+ +
Sbjct: 139 RAAWERARTCPGIGQITLMTHFADADGERGVAD--QMAAFERGAEGIAGA-RSLANSAAV 195

Query: 203 LLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIRKALAGELVSYGG 258
           +  P+ H    RPGI LYG +     +      +Q  +T  + +I ++    G+ V YGG
Sbjct: 196 MWHPDTHGDWVRPGILLYGASPSGRAADIAGAGLQAAMTLGSELIAVQNIAKGQAVGYGG 255

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
                    I V A GYADGYP                G    + G    I+G+++MDM 
Sbjct: 256 AFVAPAQMRIGVVACGYADGYPR-----------IAPEGTPIVVDGVRTRIVGRVSMDMI 304

Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
             D+T      +G  ++++G  + +DDVA +  T  Y+L+  I +R  
Sbjct: 305 TVDLTPVPGAGIGARVELWGQALPIDDVAASCSTVGYELMCAIASRVP 352


>gi|238026883|ref|YP_002911114.1| alanine racemase [Burkholderia glumae BGR1]
 gi|237876077|gb|ACR28410.1| Alanine racemase [Burkholderia glumae BGR1]
          Length = 356

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 143/345 (41%), Gaps = 22/345 (6%)

Query: 27  SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI 86
           +  ++  AVVK NAYG G  +  P L   G   F +  V+E V+LR       I +L G 
Sbjct: 25  APRSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLDVDEAVRLRELGWAGPILLLEGF 82

Query: 87  HPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
               +  + D  +L   + +  Q+    +           L++++G NRLG S+ +    
Sbjct: 83  FRSTDVDVIDRYSLTTALHNDDQMRML-ETARLSKPVNILLKMNSGMNRLGYSVDKYRAA 141

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG 205
              +          +++H A A        + Q+  F        G    LA+S+ ++  
Sbjct: 142 WERARTCPGIGQITLMTHFADA--DGERGVAAQMAAFERGAEGIAGARC-LANSAAVMWH 198

Query: 206 PNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
              H    RPGI LYG +            +Q  +T  + +I ++   AG+ V YGG   
Sbjct: 199 AQTHHDWVRPGILLYGASPSGRAADIADAGLQPAMTLASELIAVQSIKAGDAVGYGGAFV 258

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
            T+   I V A GYADGYP                G    + G    I+G+++MDM   D
Sbjct: 259 ATQAMRIGVVACGYADGYPR-----------VAPEGTPVLVDGVRTRIVGRVSMDMITVD 307

Query: 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +T      +G  ++++G  + +DDVA    T  Y+L+  +  R  
Sbjct: 308 LTPVPQAGIGARVELWGRALPVDDVAAHCATVGYELMCAVAQRVP 352


>gi|15827104|ref|NP_301367.1| alanine racemase [Mycobacterium leprae TN]
 gi|221229582|ref|YP_002502998.1| alanine racemase [Mycobacterium leprae Br4923]
 gi|584747|sp|P38056|ALR_MYCLE RecName: Full=Alanine racemase
 gi|467127|gb|AAA17309.1| alr [Mycobacterium leprae]
 gi|13092652|emb|CAC29883.1| putative alanine racemase [Mycobacterium leprae]
 gi|219932689|emb|CAR70468.1| putative alanine racemase [Mycobacterium leprae Br4923]
          Length = 388

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 166/379 (43%), Gaps = 26/379 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+  N   +   +G A+   V+K +AYG G  ++A A   AG  +  V +V
Sbjct: 13  LAEAVVDLGAIDYNVRVLREHAGMAQLMVVLKADAYGHGATQVALAALAAGAAELGVATV 72

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           +E + LR     A +                 ++   +SSV Q       +   G +   
Sbjct: 73  DEALALRADGISAPVLAWLHPPGIDFGPALLADVQIAVSSVRQLDELLDAVRRTGRTATV 132

Query: 125 ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            ++ DTG NR G+   +          +  +   +L  ++SHL  AD P +  N VQ +R
Sbjct: 133 TVKADTGLNRNGVVTDQYPAMLTALQRAVVEDAVRLRGLMSHLVYADQPDNPSNDVQGKR 192

Query: 182 FRTLI--SHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235
           F  L+  +H +G+    A L++SS  +  P+  + L RPGI++YG +   ++    +   
Sbjct: 193 FAALLAQAHEQGLRFEVAHLSNSSATMSRPDLAYDLVRPGIAVYGLSPVPSRGDMGLIPA 252

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T +  + +++   AGE VSYG       D+ +A+  +GYADG   +L G          
Sbjct: 253 MTVKCAVAMVKSIRAGEGVSYGHDWIAQHDTNLALLPVGYADGVFRSLGGRLD------- 305

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350
                 I G   P +G+I MD  + D+      +  GD   +FGP    +    D A   
Sbjct: 306 ----VLINGKRRPGVGRICMDQFVVDLGPGPIDVAEGDEAILFGPGARGEPTAQDWADLL 361

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT +Y+++  +  R  + Y
Sbjct: 362 GTIHYEVVTSLRGRITRTY 380


>gi|241190627|ref|YP_002968021.1| alanine racemase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196033|ref|YP_002969588.1| alanine racemase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|240249019|gb|ACS45959.1| alanine racemase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250587|gb|ACS47526.1| alanine racemase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793616|gb|ADG33151.1| alanine racemase [Bifidobacterium animalis subsp. lactis V9]
          Length = 455

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 105/408 (25%), Positives = 171/408 (41%), Gaps = 46/408 (11%)

Query: 6   FLRLKIDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             ++ +DL AL++N   +    N   G      VVK +AYG G    A A    G     
Sbjct: 31  PAQVIVDLAALRDNMRHLVDITNREGGPTEVMGVVKADAYGHGLVPSALAALAGGATWLG 90

Query: 62  VTSVEEGVKLRLYTP---QARIFVLYGIH-----PGQEKIIFDTNLIPVISSVPQLTFYS 113
           V    E + LR       +AR  VL  ++     P  + I  D +L     +  Q     
Sbjct: 91  VAQAREALALRNAGIGVDRAR--VLTWVNNPLHAPYDDLIAADVDLSVATLTAIQ-KIAE 147

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDP 170
              + G      ++VDTGF R G +L +   A+D      ++ + ++    SHLA AD P
Sbjct: 148 AARAVGKPARVHIKVDTGFGRNGFTLAQIDSAIDLLLPLVDEGVFEIVGQWSHLAVADAP 207

Query: 171 S----SHVNSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYG 221
           +          Q+  F    S  H +GIE     LA+++  L  P  H+ L RPG++LYG
Sbjct: 208 AVGEFVEKTDEQIRVFEEFTSRLHARGIEPRIRHLANTAATLSRPEIHYDLVRPGVALYG 267

Query: 222 GTDKINKSHPMQ----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
                    P +      +T +A++  ++   AGE +SYG        +  A+  +GYAD
Sbjct: 268 YEADPAMGTPSKYELRPAMTLQAQLSSVKNVGAGEGLSYGRVYVTDEPTSAAIVPVGYAD 327

Query: 278 GYPLTLSGLDSEHSPSVFL-GGKGFI---KGYMV-PILGKITMDMTMFDITDSLS---IE 329
           G   + SG +   S  V   G    +    G  +  + G++ MD  + D+        + 
Sbjct: 328 GIHRSASGFNEAGSKHVNKPGAPVRVMTRDGARIFHVSGRVCMDQFILDLHGDAENMGVH 387

Query: 330 VGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +GD +++FGP       +   DD A A+ T +Y++   +  R  + Y 
Sbjct: 388 IGDTVELFGPGRGEDYLEPTADDWARAADTISYEIFTCLRNRVPRLYA 435


>gi|183602553|ref|ZP_02963918.1| alanine racemase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683598|ref|YP_002469981.1| alanine racemase [Bifidobacterium animalis subsp. lactis AD011]
 gi|183218194|gb|EDT88840.1| alanine racemase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621248|gb|ACL29405.1| alanine racemase [Bifidobacterium animalis subsp. lactis AD011]
          Length = 452

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 105/408 (25%), Positives = 171/408 (41%), Gaps = 46/408 (11%)

Query: 6   FLRLKIDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             ++ +DL AL++N   +    N   G      VVK +AYG G    A A    G     
Sbjct: 28  PAQVIVDLAALRDNMRHLVDITNREGGPTEVMGVVKADAYGHGLVPSALAALAGGATWLG 87

Query: 62  VTSVEEGVKLRLYTP---QARIFVLYGIH-----PGQEKIIFDTNLIPVISSVPQLTFYS 113
           V    E + LR       +AR  VL  ++     P  + I  D +L     +  Q     
Sbjct: 88  VAQAREALALRNAGIGVDRAR--VLTWVNNPLHAPYDDLIAADVDLSVATLTAIQ-KIAE 144

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDP 170
              + G      ++VDTGF R G +L +   A+D      ++ + ++    SHLA AD P
Sbjct: 145 AARAVGKPARVHIKVDTGFGRNGFTLAQIDSAIDLLLPLVDEGVFEIVGQWSHLAVADAP 204

Query: 171 S----SHVNSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYG 221
           +          Q+  F    S  H +GIE     LA+++  L  P  H+ L RPG++LYG
Sbjct: 205 AVGEFVEKTDEQIRVFEEFTSRLHARGIEPRIRHLANTAATLSRPEIHYDLVRPGVALYG 264

Query: 222 GTDKINKSHPMQ----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
                    P +      +T +A++  ++   AGE +SYG        +  A+  +GYAD
Sbjct: 265 YEADPAMGTPSKYELRPAMTLQAQLSSVKNVGAGEGLSYGRVYVTDEPTSAAIVPVGYAD 324

Query: 278 GYPLTLSGLDSEHSPSVFL-GGKGFI---KGYMV-PILGKITMDMTMFDITDSLS---IE 329
           G   + SG +   S  V   G    +    G  +  + G++ MD  + D+        + 
Sbjct: 325 GIHRSASGFNEAGSKHVNKPGAPVRVMTRDGARIFHVSGRVCMDQFILDLHGDAENMGVH 384

Query: 330 VGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +GD +++FGP       +   DD A A+ T +Y++   +  R  + Y 
Sbjct: 385 IGDTVELFGPGRGEDYLEPTADDWARAADTISYEIFTCLRNRVPRLYA 432


>gi|256846795|ref|ZP_05552250.1| alanine racemase [Fusobacterium sp. 3_1_36A2]
 gi|256717761|gb|EEU31319.1| alanine racemase [Fusobacterium sp. 3_1_36A2]
          Length = 356

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 170/375 (45%), Gaps = 34/375 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L   GV+ F V ++
Sbjct: 2   RTWIEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    + +I +L      +        +   ISS+ QL F   L+   ++    
Sbjct: 62  EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQLQF---LVDKNLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + EA        N  L  L  I SHL+ +D     + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVDEAEKVIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKF 177

Query: 183 RTLISHYK-GIE-ASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           + +++     +E   +++S+GI     +    L R GI +Y  T    K+  ++ + T +
Sbjct: 178 KKIVNSLNLNLEYIHISNSAGITNFHNDILGNLVRLGIGMYSFTGN-KKTSYLKNIFTIK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R++ I+K      VSYG    L  DS  AV  IGYADG    LS            GG 
Sbjct: 237 SRVLFIKKVNKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGY 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN--- 354
             I  +   I+G I MDMTM  I   +   I++GD + +   +I LD++           
Sbjct: 286 VLINNHRCEIIGNICMDMTMIRIPKEIENSIKIGDEVTVINANI-LDNLN-----IPELC 339

Query: 355 -YDLLVRIGTRYAKF 368
            ++ +  IG R  + 
Sbjct: 340 VWEFMTGIGKRVKRI 354


>gi|330822880|ref|YP_004386183.1| alanine racemase [Alicycliphilus denitrificans K601]
 gi|329308252|gb|AEB82667.1| Alanine racemase [Alicycliphilus denitrificans K601]
          Length = 364

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 152/375 (40%), Gaps = 30/375 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N       + +AR  AVVK NAYG G E++   L +       +  
Sbjct: 3   RPILATIHPAAVQHNLERARRAAPDARMWAVVKANAYGHGIERVFEGLRS--ADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R    +  + +L G+  P   ++    +L   +    Q+ + +   +    H 
Sbjct: 61  MAEAERVRRLGWRGPVLLLEGVFEPRDLELCSRLSLWHAVHCDEQIDWLAAHKTQA-PHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG +                      ++H + AD P     + Q++ F 
Sbjct: 120 VFLKMNSGMNRLGFAPGRYRSAWARLNALPQVDEISFMTHFSDADGPRGI--AHQVQAFH 177

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINK----SHPMQTVV 236
                  G E  +A+S+ IL             R GI+LYG      +       ++  +
Sbjct: 178 RATQDLPG-ERCIANSAAILRHGGEAQVRLDWVRAGIALYGSAPDHPERTAVDWGLEPAM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  +RII +++  AG+ V YG +        I V A GYADGYP                
Sbjct: 237 TLASRIIGVQQLQAGDTVGYGSRFTAEGPLAIGVVACGYADGYPRH-----------CDT 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    + G     +G+++MDM   D+T      +G  + ++G       + +D+VA A G
Sbjct: 286 GTPVLVNGVRTRTIGRVSMDMIAVDLTPVPGAGMGAEVTLWGRASNGVVLPIDEVAEAGG 345

Query: 352 TTNYDLLVRIGTRYA 366
           T  Y+L+  +  R  
Sbjct: 346 TVGYELMCALAPRVP 360


>gi|152997631|ref|YP_001342466.1| alanine racemase [Marinomonas sp. MWYL1]
 gi|189027389|sp|A6W1F2|ALR_MARMS RecName: Full=Alanine racemase
 gi|150838555|gb|ABR72531.1| alanine racemase [Marinomonas sp. MWYL1]
          Length = 365

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 165/372 (44%), Gaps = 23/372 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L   +DL A+  N+     L    +  AVVK NAYG G  +++  L    V  F V +
Sbjct: 3   RPLTATVDLEAILQNYRYAKKLQPTCKAFAVVKSNAYGHGAVEVSRYLDKE-VDAFAVAA 61

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE + LR     + I +L G+  G+E  + +       + +  QL       S      
Sbjct: 62  IEEAIALREAGIVSPILLLEGVFEGEEWALCEKHGFWSALENAQQLDELQA--SHAKIEK 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +RLG+  + A  F     +       ++++H +CADD S      QL  F 
Sbjct: 120 VFLKLDSGMHRLGVDKETAPVFVSALKDSGQVGEVVLMTHFSCADDLSDLTTMQQLAYFE 179

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240
                   IEAS+A+S+ I+          RPGI LYG +       +S  ++  +T  +
Sbjct: 180 QARQSIGEIEASVANSATIMKWSVPEGGWIRPGIMLYGISPFAEVSGRSIGLRPAMTLSS 239

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           ++I  RK   G+ V YG       D ++A  A+GY DGYP                G   
Sbjct: 240 KVISTRKLKQGDKVGYGLGYVAAEDHVLATVAVGYGDGYPRHAVN-----------GTPL 288

Query: 301 FIKGYMVPILGKITMDMTMF---DITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
            I G    + G+++MDM      D+ D     +G  + ++G D+ +++VA  +GT  Y+L
Sbjct: 289 KIDGKPASLAGRVSMDMITVRMQDLADEP--AMGQDVVLWGGDVPVEEVADYAGTIGYEL 346

Query: 358 LVRIGTRYAKFY 369
           + R+ +R    Y
Sbjct: 347 VTRMTSRPHYRY 358


>gi|114797948|ref|YP_759453.1| alanine racemase [Hyphomonas neptunium ATCC 15444]
 gi|114738122|gb|ABI76247.1| alanine racemase [Hyphomonas neptunium ATCC 15444]
          Length = 351

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 190/368 (51%), Gaps = 21/368 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           ++  R  +    + +NW +++AL   A TAAVVK +AYGLG  ++A AL  AG Q FFV 
Sbjct: 2   SQMPRATVLTGNIADNWRTLDALHPGATTAAVVKADAYGLGAMRVARALRIAGCQTFFVA 61

Query: 64  SVEEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             EEG+ +R      ARIFVL G    +     D +L  V+SS      + KL       
Sbjct: 62  YAEEGLIVRKAAGKAARIFVLNGPVRSEMATYRDADLTAVLSS----EAHVKLWGTAPKG 117

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             AL  DTG NRLGL +  +     +    +  Q  LI+SHLACADDP +  N+ Q + F
Sbjct: 118 SCALHFDTGMNRLGLPMDMSE---KDLAALRRLQPVLIMSHLACADDPENPANTAQRKAF 174

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
             +   +    ASLA+S+G  LG  + + LTRPG++LYGGT    +   ++  V  EA I
Sbjct: 175 NEISDAFPDTPASLANSNGCYLGKGFAYDLTRPGLALYGGT-TPPEKVKLKPGVILEASI 233

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +       G  V YGG   L  D ++A  A+GYADG P   +   +           G++
Sbjct: 234 LATFSGQTGTKVGYGGTHTLPEDRILATCALGYADGIPRAGANQIT-----------GWL 282

Query: 303 KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           +G   P+LG+I+MD+   D+TD +   + G  ++  G + KL+  A A GT  Y+LL  +
Sbjct: 283 EGNPCPVLGRISMDLITLDVTDCVKHAKPGARVEFLGENAKLEVQAAACGTLGYELLTGL 342

Query: 362 GTRYAKFY 369
           G R  + Y
Sbjct: 343 GPRVQRVY 350


>gi|260497955|ref|ZP_05816072.1| alanine racemase [Fusobacterium sp. 3_1_33]
 gi|260196516|gb|EEW94046.1| alanine racemase [Fusobacterium sp. 3_1_33]
          Length = 354

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 103/373 (27%), Positives = 166/373 (44%), Gaps = 32/373 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  ++ N     VVK NAYGLG  +I   L   GV  F V ++
Sbjct: 2   RTWVEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSVEITKILQEIGVNFFGVANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    + +I ++      +        +   ISS+ QL F   L++  ++    
Sbjct: 62  EEAIELQEAGIKDKILIIGASFEDELIEATKRGVHVAISSMGQLQF---LVNNKLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + EA        N  L  L  + SHL+ +D     + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVDEAKKVIEFCKNNNL-NLVGVFSHLSDSDGNTVETKNFTLEQIEKF 177

Query: 183 RTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + +I+        +++S+GI     +    L R GI +Y  T      + ++ + T ++R
Sbjct: 178 KKIINPLNLKYIHISNSAGITNFHNDIVGNLVRMGIGMYSFTGNKKTPY-LKNIFTIKSR 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ I+K      VSYG    L  DS  AV  IGYADG    LS            GG   
Sbjct: 237 LLFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGYVL 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355
           I  +   I+G I MDMTM  I   +   +++GD + +   DI LD++            +
Sbjct: 286 INNHRCEIIGNICMDMTMIRIPKEIENSVKIGDEVTVINADI-LDNLN-----IPELCVW 339

Query: 356 DLLVRIGTRYAKF 368
           + +  IG R  + 
Sbjct: 340 EFMTGIGKRVKRI 352


>gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1]
 gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1]
          Length = 844

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 157/375 (41%), Gaps = 24/375 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +    ++IDL A+++N  ++ +++G     AV+K +AYG G  + A A    G     V 
Sbjct: 479 DRPTWVRIDLDAIRDNVRTLRSIAG-VPVMAVLKADAYGHGAVRAARAALAGGAVALAVA 537

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++ E   LR     A I  L    P Q        +   +         + +   GV  P
Sbjct: 538 TLGEARTLREAGIGAPILALGYTPPWQVAQAARLGVAITVFDYDAARACAAVAETGVPVP 597

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VDTG  R GLS+ E   F  +        +  + +H A AD         QL RFR
Sbjct: 598 VHVEVDTGMARTGLSVDELGPFLRSLAGLPGVHVEGLYTHFADADAADPGAAEAQLRRFR 657

Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVV 236
           + +     +  +      A+S+ +L  P   F + RPGI+ YG       + P   +  +
Sbjct: 658 SALDAVTGAGLRPPVVHAANSAAMLRLPGARFDMVRPGIACYGLAPSPWVTLPAALRPAL 717

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  + +  +R    G  VSYGG     R S IA   +GYADG                  
Sbjct: 718 SFHSEVAQVRDLPPGTPVSYGGTFVTRRHSRIATIPVGYADGMRRA------------PP 765

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             +  ++G   P++G+I MD  M D+TD   +  GD + + G      I + +VA   GT
Sbjct: 766 WREVLVRGRRAPVVGRICMDYAMIDVTDHAEVRRGDLVTLIGVQGDACITVAEVASWLGT 825

Query: 353 TNYDLLVRIGTRYAK 367
            +YD++  I  R  +
Sbjct: 826 ISYDVVATILPRVPR 840


>gi|289550307|ref|YP_003471211.1| Alanine racemase [Staphylococcus lugdunensis HKU09-01]
 gi|289179839|gb|ADC87084.1| Alanine racemase [Staphylococcus lugdunensis HKU09-01]
          Length = 382

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 158/382 (41%), Gaps = 30/382 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ NN+     L  N     V+K N YGLG  +IA  L + G   
Sbjct: 2   SDKYYRNTYINVDLAAINNNYRQFTQLHDNKTVIPVIKANGYGLGSVRIAQYLVDHGASF 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V +++E ++LR++  +A+I +L  I            +   + S   L+   K ++  
Sbjct: 62  FAVATLDEAIELRMHGIKAQILILGVIPIEDINKAIQHRVAITVPSKSWLSSAIKAINDD 121

Query: 120 --VSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                   +++DTG  RLG+  Q E     H     +      + +H ACAD+P      
Sbjct: 122 NEKRLWLHIKLDTGMGRLGIKNQAEYHQTIHLIEQHEHLVFEGVYTHFACADEPGDSA-Q 180

Query: 177 VQLERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231
            Q + F+T ++           +S+G L+         R GISLYG              
Sbjct: 181 QQYQCFKTWVTSTDMPRYVHAQNSAGALMIDADICNAVRLGISLYGYYPSEYVKEEADIE 240

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +Q       +I+  ++   GE VSYG          I +  IGYADGY   + G      
Sbjct: 241 LQPSAELMTQIVQTKELQPGESVSYGSTYTAQSPIKIGIIPIGYADGYLRIMQGHF---- 296

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                     +KG    ++G++ MD T+  I D   I  GD + +          +D +A
Sbjct: 297 --------VNVKGQQCEVIGRVCMDQTIIKIND--DILEGDEVCVISKQQDSIQSVDAIA 346

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
               T NY++L  +G R  + Y
Sbjct: 347 KQQKTINYEVLCNLGRRLPRIY 368


>gi|167757231|ref|ZP_02429358.1| hypothetical protein CLORAM_02781 [Clostridium ramosum DSM 1402]
 gi|167703406|gb|EDS17985.1| hypothetical protein CLORAM_02781 [Clostridium ramosum DSM 1402]
          Length = 341

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 157/353 (44%), Gaps = 31/353 (8%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
             VVK   YG G  ++A      G++ F V +++EG+KLR +     I VL   HP +  
Sbjct: 1   MVVVKAEGYGHGLVEVAKHCQKMGIEAFAVATIDEGIKLREHGIYGEILVLGYSHPIRAI 60

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
            + +  LI  I +        +L   G      +++DTG +RLG  L +  +     ++ 
Sbjct: 61  ELHNYRLIQTIVN---REHARQLNESGHMINVHIKIDTGMHRLGFDLSDY-ESIKEIYDY 116

Query: 153 KLGQLSLIISHLACADDP---SSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILL 204
           +   +    +HL   D            Q+  F  LI+  K          L SS G++ 
Sbjct: 117 QFIHIQGYFTHLCVCDSKRKVDQEYTQKQIAAFYDLINELKLRHYDIGKVHLQSSYGLVN 176

Query: 205 GPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
            P  +    R GI +YG     N        ++  +T +A+I ++     G  + YG   
Sbjct: 177 YPEINADYARVGILMYGVYSTFNDYSKVQLDLKPALTIKAQIAMLHYLTKGASLGYGLTY 236

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
           K+ RDS+IAV  IGY DG P  LS             G   IKG   PI+G+I MD  + 
Sbjct: 237 KVNRDSVIAVIPIGYGDGLPRILS-----------SNGSVLIKGQKCPIVGRICMDQMLV 285

Query: 321 DITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D+++   I   D + + G D    I+++++AL + T + ++L R+G+R  + Y
Sbjct: 286 DVSEISDISDNDLVTVIGQDGTEEIRVEEIALEANTISNEILSRLGSRLPRIY 338


>gi|326575825|gb|EGE25748.1| alanine racemase [Moraxella catarrhalis CO72]
          Length = 380

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 169/382 (44%), Gaps = 30/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S     + I   AL +N   +   L    +  A+VK +AYG G +   P L +     
Sbjct: 1   MRSTS---ITIHPNALTHNLQIIKSQLDPTTKVLAMVKADAYGHGIDATVPVLIH--ADG 55

Query: 60  FFVTSVEEGVKLRLYTP----QARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQ--LTFY 112
           F V  + E + ++        +  I ++ G     + K+  D +   +I    Q      
Sbjct: 56  FGVACLSEAMAVKQVLDGMNHKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALS 115

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            +       H   L+ +TG +RLG +    +    +  +   G   ++ SH ACADD S 
Sbjct: 116 HRPKQDQFCHTIWLKYNTGMSRLGFNDDHIITAAKSLADA--GYRLILTSHFACADDKSH 173

Query: 173 HVNSVQLERFRTLISHYKGIEA----SLASSSGILLGPNYHFQLTRPGISLYGG---TDK 225
            +N+ Q+ +F   ++  +        SL +S+GI    + H    R GI+LYG    TD+
Sbjct: 174 PLNAQQISKFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQ 233

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             K+  +   +T  A+++ I    AG+ + Y       +   IAV +IGY DGYP  + G
Sbjct: 234 SAKALNLMPAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG 293

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                + +           ++  I+G++ MDM M DI D L I +   + ++G    +D+
Sbjct: 294 AKVSVTDTSG-------NRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAK 367
           VA+ +GT  Y+L+ R+ TR  +
Sbjct: 346 VAMCAGTIGYELMCRLTTRPKR 367


>gi|295395165|ref|ZP_06805373.1| alanine racemase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971927|gb|EFG47794.1| alanine racemase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 384

 Score =  322 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 96/390 (24%), Positives = 159/390 (40%), Gaps = 36/390 (9%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++  L   ID  AL +N   +   +   +  A+VK +AYG G   + PAL  AGV  F  
Sbjct: 2   TSAPLTAVIDTRALVHNVQLLQERAAGKQLVAIVKADAYGHGVNLVVPALARAGVTHFGT 61

Query: 63  TSVEEGVK-------LRLYTPQA-----RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT 110
            ++ E V        L  +          +               +  +   + S   L 
Sbjct: 62  ATIPEAVAVQDILAGLSDHGDDCGESDHTVMCWLYEPNADLSEPVERGIELGVGSPAALE 121

Query: 111 -FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
             ++   + G +    L+VDTG  R GL+  +              Q+  ++SH ACAD+
Sbjct: 122 SIFNAAHTTGKTARIHLKVDTGLGRNGLNSTQLQQVLEQLTTAHGVQVCGVMSHFACADE 181

Query: 170 PSSHVNSVQLERFRTLISHYK------GIEASLASSSGILLGPNYHFQLTRPGISLYGGT 223
           P +  N+ Q+ERF   +   K       +   +A+S  IL          R G+++YG +
Sbjct: 182 PDNDFNTTQIERFNQAVDTVKATLQIDNLMEHIANSPAILSMDPVPGNAVRAGVAMYGLS 241

Query: 224 DKINKSH----PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
                 H     +Q  +T  + +   +   AG+  SYG +   +  S  A+ A GY DG 
Sbjct: 242 PFAPVDHAYSEGLQPAMTLVSHVCAAKDVPAGQGASYGLRYTTSASSKFALVAGGYGDGI 301

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339
           P   S                 I+G   P++G I MD  + D+ D+  +  GD + I+G 
Sbjct: 302 PRQAS-----------HKAHVAIQGKAFPVVGSIAMDQMIADVGDA-QVSPGDPVVIWGN 349

Query: 340 -DIKLDDVALASGTTNYDLLVRIGTRYAKF 368
               +D+ A  +GT NYD++ R+G R  + 
Sbjct: 350 GGPHVDEWAQWAGTINYDIVTRLGARVPRV 379


>gi|237739916|ref|ZP_04570397.1| alanine racemase [Fusobacterium sp. 2_1_31]
 gi|229423524|gb|EEO38571.1| alanine racemase [Fusobacterium sp. 2_1_31]
          Length = 354

 Score =  322 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 103/373 (27%), Positives = 162/373 (43%), Gaps = 32/373 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  L+ N     VVK NAYGLG  +IA  L   GV  F + ++
Sbjct: 2   RTWVEIDKENLKYNILKLKELADNREVLGVVKANAYGLGSVEIAKILQEVGVNFFGLANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    +A   +L      +        +   ISS+ QL F   L+   ++    
Sbjct: 62  EEAIELQDAGIKANFLILGASFEDELVEATKRGIHTAISSIQQLRF---LVENNLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + EA +   N        L  I +HL+ +D     + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVDEAEEVI-NFCKTNNLNLVGIFTHLSDSDGNTIDTKNFTLEQIEKF 177

Query: 183 RTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + ++         +++S+GI     N    L R GI++Y  T        ++ V T +++
Sbjct: 178 KNIVKGLDLKYIHISNSAGITNFHENILGNLVRAGIAMYSFTGNKKTPC-LKNVFTIKSK 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +K      VSYG    L  DS  AV  IGYADG    L+            GG   
Sbjct: 237 VLFTKKVNKDSFVSYGRHYTLPADSTYAVIPIGYADGLKKYLT-----------KGGYVL 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355
           I  Y   I+G I MDMTM  I   L   I++ D + +   DI +D++            +
Sbjct: 286 INNYRCEIIGNICMDMTMVRIPKELEKTIKISDEVTVINADI-IDNLN-----IPELCVW 339

Query: 356 DLLVRIGTRYAKF 368
           + +  IG R  + 
Sbjct: 340 EFMTGIGRRVKRI 352


>gi|67479937|gb|AAY67970.1| serine racemase [Enterococcus gallinarum]
          Length = 698

 Score =  322 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 105/371 (28%), Positives = 169/371 (45%), Gaps = 38/371 (10%)

Query: 15  ALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  + S   +  AVVK +AYG G +++AP L  AG+  F V +++EG++LR 
Sbjct: 348 ALLHNLQEIQRIISPKTKVMAVVKADAYGCGAKEVAPVLEQAGIDFFAVATIDEGIQLRK 407

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++ I VL    P + K +   +L   I S         L    V+    L +DTG +
Sbjct: 408 NAVKSPILVLGYTSPKRIKELRRYSLTQSIISEG---HAVALSQRKVAIDCHLAIDTGMH 464

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHV-NSVQLERFRTLISHYK 190
           RLG++    +D   + F+     +S + SHL  AD  +P S +    Q+  F  ++    
Sbjct: 465 RLGVTP--TIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQIACFDQILLELD 522

Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAEAR 241
             +       L SS GIL  P+ ++   RPGI L G     N+        Q ++T +A+
Sbjct: 523 QRQISYGITHLQSSYGILNYPDLNYDYVRPGILLTGSLSDTNEPTKQRVSLQPILTLKAQ 582

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I  R    GE + YG      +++ + V +IGY DG P +LS  +   S          
Sbjct: 583 LITKRVVAKGEAIGYGQTAVANQETTVGVVSIGYCDGLPRSLSNQEFCLSY--------- 633

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV---ALASGTTNYDLL 358
            +G  +P +G I MDM + D++   +I +   I+I        D    A    T   +L+
Sbjct: 634 -RGQSLPQIGLICMDMLLIDLSHCPTIPIESEIEIL------TDWSDTAEQVQTITNELI 686

Query: 359 VRIGTRY-AKF 368
            RIG R  A+ 
Sbjct: 687 CRIGPRVSARI 697


>gi|255020460|ref|ZP_05292525.1| alanine racemase [Acidithiobacillus caldus ATCC 51756]
 gi|254970070|gb|EET27567.1| alanine racemase [Acidithiobacillus caldus ATCC 51756]
          Length = 365

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 103/374 (27%), Positives = 162/374 (43%), Gaps = 24/374 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +R  I  +AL +N     A    A+  A VK NAYG G    AP L  AGV+ F V S
Sbjct: 3   RPVRACISASALAHNVAVARARMPGAKLMAAVKANAYGHGLAVCAPELARAGVEGFAVAS 62

Query: 65  VEEGVKLR--LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           +EE  +L      P A   +     PG+  +      I VI    QL +  +        
Sbjct: 63  MEEAEQLYDLALGPSA-CLLAGPFAPGEIPLAAARGHILVIHRAAQLAWLQE-QRWNRPL 120

Query: 123 PYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++ D+G +RLG +       F   +  +   ++  ++SHLA +D P+   N+ Q+  
Sbjct: 121 SIWIKFDSGMHRLGFAPSALGPVFEALAAVQSPLRILGLMSHLARSDTPNDPHNTRQIRE 180

Query: 182 FRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTV 235
           FR  I  +      E SLA+S  +L      F   RPG+ LYG +       +   ++ V
Sbjct: 181 FRAAIGQWGERTLGEHSLANSGAVLALGEARFPWMRPGLMLYGLSPFPGQTGRDLGLRPV 240

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++ +A+II  R+   GE + YG   +   +  + V A GY DG+   L            
Sbjct: 241 LSWQAQIIATRRLAPGEWLGYGAAYQAPHEQRVGVVACGYGDGFDRHLG----------- 289

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-KLDDVALASGTTN 354
            G   +I       LG+++MD+   D+ DS   + GD++ + G     L+ +A   GT  
Sbjct: 290 QGAPVWIGSQRSQTLGRVSMDLLFVDLQDS-DAQEGDWVTLMGVGAEPLESLAERLGTIP 348

Query: 355 YDLLVRIGTRYAKF 368
           Y+L  RI  R  + 
Sbjct: 349 YELGTRIQARVPRV 362


>gi|319761022|ref|YP_004124959.1| alanine racemase [Alicycliphilus denitrificans BC]
 gi|317115583|gb|ADU98071.1| alanine racemase [Alicycliphilus denitrificans BC]
          Length = 364

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 152/375 (40%), Gaps = 30/375 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N       + +AR  AVVK NAYG G E++   L +       +  
Sbjct: 3   RPILATIHPAAVQHNLERARRAAPDARMWAVVKANAYGHGIERVFEGLRS--ADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           + E  ++R    +  + +L G+  P   ++    +L   +    Q+ + +   +    H 
Sbjct: 61  MAEAERVRRLGWRGPVLLLEGVFEPRDLELCSRLSLWHAVHCDEQIDWLAAHKTQA-PHR 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG +                      ++H + AD P     + Q++ F 
Sbjct: 120 VFLKMNSGMNRLGFAPGRYRSAWARLNALPQVDEISFMTHFSDADGPRGI--AHQVQAFH 177

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINK----SHPMQTVV 236
                  G E  +A+S+ IL             R GI+LYG      +       ++  +
Sbjct: 178 RATQDLPG-ERCIANSAAILRHGGEAQVRLDWVRAGIALYGSAPDHPERTAVDWGLEPAM 236

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  +RII +++  AG+ V YG +        I V A GYADGYP                
Sbjct: 237 TLASRIIGVQQLQAGDTVGYGSRFTAEGPLAIGVVACGYADGYPRH-----------CDT 285

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351
           G    + G     +G+++MDM   D+T      +G  + ++G       + +D+VA A G
Sbjct: 286 GTPVLVNGVRTRTIGRVSMDMIAVDLTPVPGAGMGAEVTLWGRAANGVVLPIDEVAEAGG 345

Query: 352 TTNYDLLVRIGTRYA 366
           T  Y+L+  +  R  
Sbjct: 346 TVGYELMCALAPRVP 360


>gi|331699117|ref|YP_004335356.1| Alanine racemase [Pseudonocardia dioxanivorans CB1190]
 gi|326953806|gb|AEA27503.1| Alanine racemase [Pseudonocardia dioxanivorans CB1190]
          Length = 419

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 167/386 (43%), Gaps = 30/386 (7%)

Query: 3   SNEFLRLK--IDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           S+   R +  +DL A+++N   ++    +  A T AVVK + YG G   +A A   AG  
Sbjct: 25  SDRGPRAELVVDLAAVRHNVGLLSRGAAASGAATMAVVKSDGYGHGAADVARAALQAGAS 84

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMS 117
              V +++E + LR    +A +     +            +   +SS        +   +
Sbjct: 85  WLGVCTLDEALALRADGIEAPVLSWLHLPHEDFAPAVAAGVDLSVSSHGHLDAVLAGARA 144

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHV 174
                   L++DTG +R G    +  D    +         ++  + SHLA AD     V
Sbjct: 145 VDRPARLHLKIDTGLSRNGCPEDDWPDLVDAAAKAAAAGRCEVVAVWSHLAVADVARHPV 204

Query: 175 NSVQLERFRTL--ISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINK 228
              Q  RF     ++  +G+     LA+S+  +  P+ H+ L RPGI++YG     +   
Sbjct: 205 TEAQAARFDAAWRVARDRGLTPIRHLANSAATMTRPDLHYDLVRPGIAVYGLDPLGRPVA 264

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             P++  +T   R++L+++  AGE VSYG +    RD+++A+  IGY DG P  ++    
Sbjct: 265 ESPLRPAMTVRGRVVLVKQVRAGEGVSYGHEFTTPRDTVLALVPIGYGDGVPRRMNFGGR 324

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS--LSIEVGDYIQIFGPD----IK 342
                     + ++ G   P++G++ MD  + D        +  GD   +FGP       
Sbjct: 325 M---------RVWLAGRSRPVVGRVCMDQVVVDCGPDGGAEVREGDVAVLFGPGDDGAPT 375

Query: 343 LDDVALASGTTNYDLLVRI-GTRYAK 367
             + A   GT +Y+++  + G R  +
Sbjct: 376 AQEWADELGTIHYEVVTGVQGRRMTR 401


>gi|313888487|ref|ZP_07822154.1| alanine racemase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845516|gb|EFR32910.1| alanine racemase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 385

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 151/379 (39%), Gaps = 27/379 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
               ++IDL   +NN   +    G      +VVK +AY LG   ++    + G+  + V 
Sbjct: 7   RPAWIEIDLDKFENNMKIIKDKVGEKTEVMSVVKSDAYRLGALPLSQVSLDLGINYYAVA 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122
           ++ E + LR    +  I +L        +     ++   I S+      ++L  +     
Sbjct: 67  TLSEALSLRKKFDEVNILILGYTPRHLYEDAIKNHITLTIYSLNDALVLNELAGNLKEEA 126

Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              +  D+G +R+G     EA       F  +   +  I SH A A +        Q + 
Sbjct: 127 KIHIAFDSGMSRIGFMPSDEAKKEISEIFKLEKINVEGIFSHFA-ACETDPEFTDRQFKT 185

Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQT 234
           F   I     +        +A+S  +L    Y   + RPGI  +G   +D + +   ++ 
Sbjct: 186 FTNFIDELGELGCRFKFRHIANSHSVLFHDEYDLDMVRPGIIQFGYTDSDHLPEEFGLEE 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +++ +A+I  IR+   GE V Y    K  RD+ +    +GYAD +P  LS          
Sbjct: 246 ILSLKAQISSIREVKKGETVGYERFYKCPRDTKVVTLPLGYADAFPRILS---------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
               +  I G     +G I MD  M D TD    ++GD + + G     +IK+ D+ + S
Sbjct: 296 -EKIEVLINGKRCKQIGLICMDQMMVDATDV-DCKIGDDVVLIGKQGDEEIKVRDICIHS 353

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           G      +     R  K+Y
Sbjct: 354 GDCETSFITHFNRRLPKYY 372


>gi|257869522|ref|ZP_05649175.1| serine/alanine racemase [Enterococcus gallinarum EG2]
 gi|20140922|sp|Q9X3P3|VANT_ENTGA RecName: Full=Serine/alanine racemase; AltName: Full=Vancomycin
           C-type resistance protein VanT
 gi|4545123|gb|AAD22403.1| serine racemase VanT [Enterococcus gallinarum]
 gi|257803686|gb|EEV32508.1| serine/alanine racemase [Enterococcus gallinarum EG2]
          Length = 698

 Score =  321 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 105/371 (28%), Positives = 169/371 (45%), Gaps = 38/371 (10%)

Query: 15  ALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  + S   +  AVVK +AYG G +++AP L  AG+  F V +++EG++LR 
Sbjct: 348 ALLHNLQEIQRIISPKTKVMAVVKADAYGCGAKEVAPVLEQAGIDFFAVATIDEGIRLRK 407

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++ I VL    P + K +   +L   I S         L    V+    L +DTG +
Sbjct: 408 NAVKSPILVLGYTSPKRIKELRRYSLTQSIISEG---HAVALSQRKVAIDCHLAIDTGMH 464

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHV-NSVQLERFRTLISHYK 190
           RLG++    +D   + F+     +S + SHL  AD  +P S +    Q+  F  ++    
Sbjct: 465 RLGVTP--TIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQIACFDQILLELD 522

Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAEAR 241
             +       L SS GIL  P+ ++   RPGI L G     N+        Q ++T +A+
Sbjct: 523 QRQISYGITHLQSSYGILNYPDLNYDYVRPGILLTGSLSDTNEPTKQRVSLQPILTLKAQ 582

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I  R    GE + YG      +++ + V +IGY DG P +LS  +   S          
Sbjct: 583 LITKRVVAKGEAIGYGQTAVANQETTVGVVSIGYCDGLPRSLSNQEFCLSY--------- 633

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV---ALASGTTNYDLL 358
            +G  +P +G I MDM + D++   +I +   I+I        D    A    T   +L+
Sbjct: 634 -RGQSLPQIGLICMDMLLIDLSHCPTIPIESEIEIL------TDWSDTAEQVQTITNELI 686

Query: 359 VRIGTRY-AKF 368
            RIG R  A+ 
Sbjct: 687 CRIGPRVSARI 697


>gi|254448149|ref|ZP_05061612.1| alanine racemase [gamma proteobacterium HTCC5015]
 gi|198262275|gb|EDY86557.1| alanine racemase [gamma proteobacterium HTCC5015]
          Length = 323

 Score =  321 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 96/337 (28%), Positives = 143/337 (42%), Gaps = 19/337 (5%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N   R  IDL A+++N       +  +R  A VK +AYG G  ++  A     V    V 
Sbjct: 2   NRPARATIDLEAIRHNVKVAKRAAPQSRVLAAVKADAYGHGLTRVLSAFEE--VDALAVA 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           SVEE V LR       I VL GI  P    +     L PV     QL + S+  S     
Sbjct: 60  SVEEAVALR-AVSDKDIVVLQGIRQPEHLALCTKHALQPVFHQSQQLDWLSRWSSQDSML 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+VD+G +RLG  L           +         ++H+ACADD S      QL+ F
Sbjct: 119 SVWLKVDSGMHRLGFDLDAVERAFVRLSDHAAVNRVACMTHMACADDRSDDYTLQQLKAF 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239
             + +       S A+S+ +L  P  H+   RPGI LYG +  I        +Q  +   
Sbjct: 179 ERVTADLSA-PRSAANSACVLGWPQAHYDWVRPGIMLYGASPFIGDTAQDWGLQPAMRLT 237

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A I+ I+    G+ V YG      +   + V AIGY DGYP   +               
Sbjct: 238 APIVAIKHCRKGDAVGYGRSWVCPKPMTLGVVAIGYGDGYPRHANNQ-----------TP 286

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
            ++KG+   ++G+++MDM   D+T    + + D + +
Sbjct: 287 AWVKGHTTHLVGRVSMDMIAIDLTGYTDVSIDDEVVL 323


>gi|302382920|ref|YP_003818743.1| alanine racemase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193548|gb|ADL01120.1| alanine racemase [Brevundimonas subvibrioides ATCC 15264]
          Length = 345

 Score =  321 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 184/362 (50%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL AL +N H++ A+SG A    VVK ++YGLG   +A  L   G + FFV  + EG
Sbjct: 7   LTVDLDALAHNVHALAAISG-APVHPVVKADSYGLGAIPVAQRLLREGSRTFFVARLAEG 65

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           + LR    P+  ++VL G        +   +L P+++   QL  +             LQ
Sbjct: 66  IALRSALGPEPTLYVLDGCVGDAAPALKAADLRPILNHGDQLMAWRAADGGA----CGLQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG  +++A              LSL++SHLACAD+P+  +N  Q + F    +
Sbjct: 122 IDTGMNRLGFRIEDAPA--------PFEGLSLVMSHLACADEPAQPMNRRQRDAFAAAAA 173

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
            Y G   S A+S G  LGP+Y F   RPGI LYGG  +      ++ V T  AR++ +R 
Sbjct: 174 RYPGALRSFANSGGCFLGPDYAFDAVRPGICLYGGGPEGRPHDRIKPVATLSARVLQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AGE + Y           IA    GYADG   +               G+ ++ G + 
Sbjct: 234 VPAGESIGYSRGFVAPEARRIATCGAGYADGVLRS-----------QCPNGQVWVAGSLR 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PILG+++MD+   D+T  L + VGD +++FGP+  LDD A A+GT +Y+LL  +  R  +
Sbjct: 283 PILGRVSMDVIAVDVTG-LDVAVGDPVELFGPNHLLDDAAAAAGTISYELLTSVTARVPR 341

Query: 368 FY 369
            Y
Sbjct: 342 RY 343


>gi|161779854|gb|ABX79415.1| VanTc4 [Enterococcus casseliflavus]
          Length = 700

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 96/365 (26%), Positives = 159/365 (43%), Gaps = 31/365 (8%)

Query: 15  ALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  +     +  AVVK +AYG   + +A  L   GV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRVIPSTTKVMAVVKADAYGCDAQLVARTLERVGVDFFAVATIEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  I S         L   G+     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELNRYSLIQTIVSEAHGQ---ALARTGLPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D   +        Q+  F  L++   
Sbjct: 467 RLGVAPD--LETVRRLYALPSLKITGIFSHLGSSDQLDTASILRTQAQIICFDDLLAGLS 524

Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEAR 241
                     L SS GIL  P  H+   RPGI L G     N+    +     ++T +A 
Sbjct: 525 ARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 584

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +   AGE + YG      R + I + +IGY DG P  LS    + S          
Sbjct: 585 LVDKKTVAAGEAIGYGLATVFDRPTTIGIVSIGYCDGVPRALSNQGFQLSY--------- 635

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            +G ++P +G I MDM + D+TD   + V  ++++        + A  + T   +L+ R+
Sbjct: 636 -QGVLLPQVGLICMDMLLIDLTDYPELAVESWLEVISD---WTNTADQAQTIPNELISRL 691

Query: 362 GTRYA 366
           G+R  
Sbjct: 692 GSRVP 696


>gi|296113256|ref|YP_003627194.1| alanine racemase Alr [Moraxella catarrhalis RH4]
 gi|295920950|gb|ADG61301.1| alanine racemase Alr [Moraxella catarrhalis RH4]
          Length = 380

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 101/382 (26%), Positives = 173/382 (45%), Gaps = 30/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S     + I   AL +N   +   L    +  A+VK +AYG G +   PAL +     
Sbjct: 1   MRSTS---ITIHPNALTHNLQIIKSQLDRTTKVLAMVKADAYGHGIDATIPALIH--ADG 55

Query: 60  FFVTSVEEGVKLRL----YTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFY-- 112
           F V  + E + ++        +  I ++ G     + K+  D +   +I    QLT+   
Sbjct: 56  FGVACLSEAMAVKQVLDGMNVKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLTWALS 115

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            +       H   L+ +TG +RLG +    +    +  +   G   ++ SH ACADD S 
Sbjct: 116 HRPKQDQFCHTIWLKYNTGMSRLGFNDDHIITAAKSLADA--GYRLILTSHFACADDKSH 173

Query: 173 HVNSVQLERFRTLISHYKGIEA----SLASSSGILLGPNYHFQLTRPGISLYGG---TDK 225
            +N+ Q+ +F   ++  +        SL +S+GI    + H    R GI+LYG    TD+
Sbjct: 174 PLNAQQISKFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQ 233

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             K+  +   +T  A+++ I    AG+ + Y       +   IAV +IGY DGYP  + G
Sbjct: 234 SAKALNLMPAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG 293

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                + +           ++  I+G++ MDM M DI D L I +   + ++G    +D+
Sbjct: 294 AKVSVTDTSG-------NRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAK 367
           VA+ +GT  Y+L+ R+ TR  +
Sbjct: 346 VAMCAGTIGYELMCRLTTRPKR 367


>gi|308447430|ref|XP_003087428.1| hypothetical protein CRE_20666 [Caenorhabditis remanei]
 gi|308256594|gb|EFP00547.1| hypothetical protein CRE_20666 [Caenorhabditis remanei]
          Length = 326

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 101/339 (29%), Positives = 157/339 (46%), Gaps = 22/339 (6%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI- 93
           +VK NAYG G +    AL       F V  + E +++R    Q  I ++ GI    E I 
Sbjct: 1   MVKANAYGHGVKDCLAALNA--TDAFGVACLAEALEIRALGYQQPITLIEGIFSADEMIS 58

Query: 94  IFDTNLIPVISSVPQLTFYSKLMS--CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
           + + NL  V+   PQL +                +++++G NRLG    E ++   +   
Sbjct: 59  VLENNLEIVVHHQPQLAWLRAHKKQYIDKGLKVWVKLNSGMNRLGFKFAEIIEVIQSL-- 116

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
           K  G   ++  H A AD     +N  Q ++F  + +  + I AS  +S+ I   P  +F 
Sbjct: 117 KAEGFTCVLAMHFANADADHHPLNEQQKDQFLQVKAACEPILASCCNSAAIFKWPELNFD 176

Query: 212 LTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
             RPGI LYG +   ++S     ++ V++  A II +    AGE V YG       +  I
Sbjct: 177 FVRPGIMLYGASPFADRSVAELDIKPVMSFTAEIIALNHIQAGESVGYGSTFFSKNEMDI 236

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
           A+ +IGY DGYP T                   I G M  I+G++ MDM   D+T  L  
Sbjct: 237 AIVSIGYGDGYPRTF-----------PQQNYVSINGQMTAIIGRVAMDMIAIDVTG-LDA 284

Query: 329 EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
            +G  ++++G D  +DDVA A+GT  Y+LL R+  R  +
Sbjct: 285 PLGTVVELWGKDRLVDDVAAANGTIGYELLCRMSARPIR 323


>gi|262066089|ref|ZP_06025701.1| alanine racemase [Fusobacterium periodonticum ATCC 33693]
 gi|291380184|gb|EFE87702.1| alanine racemase [Fusobacterium periodonticum ATCC 33693]
          Length = 354

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 103/373 (27%), Positives = 163/373 (43%), Gaps = 32/373 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  L+ +     VVK NAYGLG  +IA  L   GV  F + ++
Sbjct: 2   RTWVEIDKENLKYNILKLKELANDREVLGVVKANAYGLGSVEIAKILQEVGVNFFGLANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE V+L+    +A   +L      +        +   ISS+ QL F   L+   ++    
Sbjct: 62  EEAVELQEAGIKANFLILGASFEDELIEATKRGIHTAISSMQQLKF---LVRNNLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + EA +   N        L  I +HL+ +D     + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVDEAEEVI-NFCKTNNLNLVGIFTHLSDSDGNTIDTKNFTLEQIEKF 177

Query: 183 RTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + ++         +++S+GI     +    L R GI++Y  T     S  ++ V T +++
Sbjct: 178 KNIVKDLDLKYIHISNSAGITNFHDDILGNLVRAGIAMYSFTGNKKTSC-LKNVFTIKSK 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +K      VSYG    L  DS  AV  IGYADG    L+            GG   
Sbjct: 237 VLFTKKVGKDSFVSYGRHYTLPADSTYAVIPIGYADGLKKYLT-----------KGGYVL 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355
           I  Y   I+G I MDMTM  I   L   I++ D + +   DI +D++            +
Sbjct: 286 INNYRCEIIGNICMDMTMVRIPKELEKTIKISDEVTVINADI-IDNLN-----IPELCVW 339

Query: 356 DLLVRIGTRYAKF 368
           + +  IG R  + 
Sbjct: 340 EFMTGIGRRVKRI 352


>gi|119715145|ref|YP_922110.1| alanine racemase [Nocardioides sp. JS614]
 gi|119535806|gb|ABL80423.1| alanine racemase [Nocardioides sp. JS614]
          Length = 378

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 168/389 (43%), Gaps = 32/389 (8%)

Query: 1   MHSNEFLRLKI--DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M++    R +I  DL A++NN   +  ++G   +  VVK + YG G  + A A   AG +
Sbjct: 1   MNAPPVARAEIVVDLAAIRNNVRRLREVTG-VASMTVVKADGYGHGMLEAARAAREAGSE 59

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMS 117
              V +++E   LR      R+     +           ++     S  +L   +  + +
Sbjct: 60  WLGVATLDEAAALRAAGDTGRVLTWLTVPGEDYASAIAADVDVTAYSPAELDEIAAGVRA 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHV 174
            G      L++DTG +R G ++++  D    +   +     +++ I SH AC+D+P    
Sbjct: 120 AGRPARVQLKIDTGLSRGGATVEQWPDLVAAARAGEEAGRWRVTGIWSHFACSDEPDHPA 179

Query: 175 NSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--- 226
           N+ Q   FR  +     +  +     LA+S+  LL P+  F L R G++ YG        
Sbjct: 180 NAAQETAFRHALEVADRAGLRPEVRHLANSAAGLLRPSARFDLVRFGLASYGLDPAPGHL 239

Query: 227 -NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 +   +TA A ++L +   AG  VSYG        + + +  +GY DG P     
Sbjct: 240 AEADLGLVPAMTARAVLVLTKPLPAGAGVSYGHTWVADTPTSVGLVPVGYGDGIPRHAGN 299

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DI 341
                        +  + G    + G++ MD  + D+   L +E G  + +FGP    + 
Sbjct: 300 H-----------AQVLVDGKRRAVRGQVCMDQFVVDLGGDL-LEPGHAVVLFGPGTAGEP 347

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            + + A A+GT +Y+++ RIG R ++ Y 
Sbjct: 348 TVQEWADAAGTISYEIISRIGGRMSRRYV 376


>gi|227549893|ref|ZP_03979942.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078039|gb|EEI16002.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 362

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 163/374 (43%), Gaps = 27/374 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M S + L  +IDL A+ +N   ++ L+G+A    VVK NAY  G  ++ P +  AG   F
Sbjct: 1   MVSMDLLTARIDLDAIAHNTRILSQLAGSACLMCVVKANAYNHGVSQVVPVMDAAGADAF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
              ++ E  ++R  T    +     +         +         VP +     L+   +
Sbjct: 61  GTATLAEAAEVRELT-AKPVVSWLWVPGQDIPAGIELG-------VPSIEHLRWLVDAHI 112

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + P  ++VDTG +R GL   +  D   +   +    +  ++SHLA AD+P+   N  Q +
Sbjct: 113 NAPLHIKVDTGMHRSGLVEADW-DKAFSLAVRAGLNVRGLMSHLAVADEPAHPYNDEQAQ 171

Query: 181 RFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
            FR  I   +          LA++  +L  P+  F   R GI LYG        H ++  
Sbjct: 172 AFRRAIERARAHGLDVGCNHLANTPSLLSRPDLVFDQVRAGIGLYGLEPIAGAEHGLRPA 231

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  ARI+ ++  +AG+ +SYG       D  +AV   GYADG   +  G          
Sbjct: 232 MTWAARILAVKPLVAGDALSYGLTWSAPADGFVAVVPAGYADGVGRSWQGHL-------- 283

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGP-DIKLDDVALASGTT 353
              +  ++    P +G++ MD  +  + D+   + VGD   IFG   +   ++A   GT 
Sbjct: 284 ---EVAVRARRYPQVGRVCMDQLLIWLGDNPEGVAVGDEAIIFGAGGMSATELAERVGTI 340

Query: 354 NYDLLVRIGTRYAK 367
           NY+++     R  +
Sbjct: 341 NYEIVCSPKGRTVR 354


>gi|222081869|ref|YP_002541234.1| alanine racemase [Agrobacterium radiobacter K84]
 gi|221726548|gb|ACM29637.1| alanine racemase [Agrobacterium radiobacter K84]
          Length = 377

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 196/374 (52%), Gaps = 33/374 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNA---------YGLGCEKIAPALYNAGVQD 59
           L IDL AL+ N+ ++ A    A+                  YGLG +++APALY++G +D
Sbjct: 23  LTIDLVALRRNYETIAAAVAPAK---------AAAVVKADAYGLGADRVAPALYHSGCRD 73

Query: 60  FFVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMS 117
           FFV    E  KLR +    ARI+VL G+ PG E     T ++PV++S+ Q   + S  ++
Sbjct: 74  FFVAQFGEAEKLRPHLEADARIYVLNGLQPGAEGTCAQTGVVPVLNSMEQYKRWRSTALA 133

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                P ALQ DTG  RLG+  ++   F     +  + ++  I+SHLA AD+  +  N+ 
Sbjct: 134 QNRVLPAALQFDTGMTRLGIPPEDRAAFAAELTHTDVVEIRFIMSHLASADETDNGQNAQ 193

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           QL   R + + +     S A+S G+ LG +YH  LTR GI++YGG   ++KS+ +Q V+ 
Sbjct: 194 QLAEMRKIAAEFPQFSVSFANSGGVFLGSDYHGVLTRAGIAVYGGALTVDKSNNIQPVIR 253

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  ++  R    G L+ YGG      +  +A  A GYADG P  L              
Sbjct: 254 LDVAVVQTRSVPPGTLIGYGGAHAAKVEMRLATLAAGYADGLPRCLGDR----------- 302

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G  + +G  +PI+G+++MD    D+T      + +G  +++ GP   L+D+A ++GT +Y
Sbjct: 303 GAVYYEGVRLPIVGRVSMDSITIDVTALPPGTLMLGSLVEVIGPHQTLEDLAKSAGTISY 362

Query: 356 DLLVRIGTRYAKFY 369
           ++L  +G RY + Y
Sbjct: 363 EILTGLGHRYHRDY 376


>gi|111023143|ref|YP_706115.1| alanine racemase [Rhodococcus jostii RHA1]
 gi|110822673|gb|ABG97957.1| alanine racemase [Rhodococcus jostii RHA1]
          Length = 400

 Score =  320 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 158/377 (41%), Gaps = 26/377 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             +DL A+ +N   +   + +A   AVVK + Y  G   +A A   AG  +  VT+V E 
Sbjct: 30  AVVDLDAIAHNVRILRDSARDAAMMAVVKADGYNHGAVPVARAALAAGASELGVTTVSEA 89

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYALQ 127
           + LR     A +                  +   +SS        +   S G +    ++
Sbjct: 90  LTLRRAGIDAPVLAWLHTVDADFAPAIAAGVELGVSSPRHLAAVVAAARSVGTTAIVTIK 149

Query: 128 VDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VDTG NR G++  E          +  +   +L  I SHLA AD+P       Q +R  +
Sbjct: 150 VDTGLNRNGVAPDELAQVLVDLARAQAEGSVRLRGIFSHLAHADEPHHAWIDSQRDRLIS 209

Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTA 238
            I+  K          L++S+  L  P+  F + RPGI++YG +         ++  +T 
Sbjct: 210 AIADAKRQGLVPEVVHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPELGQFGLRPAMTL 269

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            +R+ L++K  AGE VSYG Q    RD+ +A+   GYADG P +LSG             
Sbjct: 270 RSRVALVKKVAAGEGVSYGHQWVAPRDTTVALLPFGYADGLPRSLSGRF----------- 318

Query: 299 KGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353
           +  +     P +G++ MD  + D+  D   +  GD    FG     +      A    T 
Sbjct: 319 EVQLGAQRRPGIGRVCMDQVVVDLGPDGGGVREGDTAVFFGNGDLGEPNAQAWADELDTI 378

Query: 354 NYDLLVRIGTRYAKFYT 370
           +Y+++  +  R  + Y 
Sbjct: 379 HYEVVTGVRGRTVRSYV 395


>gi|90020561|ref|YP_526388.1| alanine racemase [Saccharophagus degradans 2-40]
 gi|89950161|gb|ABD80176.1| alanine racemase [Saccharophagus degradans 2-40]
          Length = 409

 Score =  320 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 192/372 (51%), Gaps = 24/372 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +L I+L A+  NW  + +       A  V K +AYGLG +++APALY AG +DFFV ++ 
Sbjct: 46  KLTINLDAIAANWRLIQSRLAAGARAGAVVKADAYGLGVQEVAPALYRAGCRDFFVANLA 105

Query: 67  EGVKLR--LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E + +R  L    A++ VL G  P +E       ++PVI+S      +  +         
Sbjct: 106 EALLVRSLLAG-DAQVIVLSGCAPREESEFVRNGIVPVITSATMAERWLGVKGASKCGAV 164

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+V++G  RLGL   E      +      G   +++SHLACAD     +N+ QL+RF  
Sbjct: 165 -LKVNSGMGRLGLEPNEFESLLMHPNFANAG-FFMLMSHLACADQFDHPLNAAQLQRFER 222

Query: 185 LISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           +   +        ASLA+SSGI + P++H+ + RPG++LYGG     + +PM+ VV    
Sbjct: 223 MRQAFLKKVPAATASLANSSGIFISPSFHYDVARPGVALYGGNPLQRRQNPMRKVVDLRL 282

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ +R   +GE V YG      R S++   A GYADG   + +            GG  
Sbjct: 283 PVLQVRHLASGEAVGYGASFITQRPSVLLTLAGGYADGLFRSAA-----------AGGVV 331

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSI---EVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           ++    +PI+G+++MD  + D TD         G+ +++ G ++ +DD+A A+GT  Y++
Sbjct: 332 YLGEKPLPIVGRVSMDSIVVDATDVPQAAMPAEGNMLELLGDNVGVDDLAAAAGTIGYEI 391

Query: 358 LVRIGTRYAKFY 369
           L  +G RY + Y
Sbjct: 392 LTSLGGRYRREY 403


>gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
 gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
          Length = 813

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 96/376 (25%), Positives = 159/376 (42%), Gaps = 32/376 (8%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           + +I+L A+ +N   +   L+ +    A+VK  AYG     +A  L   G++   V+ ++
Sbjct: 447 QCRINLAAIASNIKQIRSRLTPHTEIMAMVKATAYGTQDALMAKFLKTEGIRRLGVSYID 506

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           EG+ LR       IFVL    P + +          ++    +    ++    G      
Sbjct: 507 EGISLRKEGVDQDIFVLNAA-PYEIEKAVSWQFEIAVNDKETIDQIGRMSSERGTITRVH 565

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184
           L ++TG +RLG   +EAL            +L  +++H AC+D+P        Q   F  
Sbjct: 566 LHINTGMSRLGCRPEEALPLARIIQAHPHLKLEGVMTHFACSDNPDEDTFTLEQSRIFDH 625

Query: 185 LISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            I     +GI        +S+  L      + + R G++LYG              ++  
Sbjct: 626 SIEAIEQEGISIPFRHACNSAAALRLHFPQYNIVRIGMALYGLCP------GGTLALSLH 679

Query: 240 ARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +RI+ I   + GE +SYG    + R+   IAV  IGY DG  L  S             G
Sbjct: 680 SRIVGINHCIKGETISYGRSYTVQREREKIAVIPIGYYDGLHLNYS-----------SKG 728

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTT 353
           K  I G   PI+G+I MD  M DIT      +GD + IFG D     +  +++A    ++
Sbjct: 729 KVMIHGAEAPIVGRICMDYMMVDITHIPDACIGDPVLIFGEDAEGNVLSPNELAEQGNSS 788

Query: 354 NYDLLVRIGTRYAKFY 369
            Y+L+  +G R  + +
Sbjct: 789 VYELISCLGPRIQRVF 804


>gi|254426806|ref|ZP_05040513.1| alanine racemase [Alcanivorax sp. DG881]
 gi|196192975|gb|EDX87934.1| alanine racemase [Alcanivorax sp. DG881]
          Length = 353

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 108/365 (29%), Positives = 160/365 (43%), Gaps = 22/365 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++I  +AL +N      L+  A   A+VK N YG G    A A++   V    V  VEE
Sbjct: 5   RVEIRPSALAHNARLARQLADGAEVFAMVKANGYGHGLLLAADAMHEN-VSGLGVALVEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
              LR +     I V  G    +E K     +L  V+ S  Q+     L++        L
Sbjct: 64  ARALREHGMTLPILVAEGFFDAEELKEAERLSLEVVVHSQWQVEL---LLASPCPVRIWL 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +V+TG NRLG     AL          +     ++SH ACAD      +  QL     + 
Sbjct: 121 KVNTGMNRLGFRPDTALQAAAQLRAGGMA-PVGVMSHFACADVSQDAYSEKQLLVAGQIA 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVT--AEARII 243
                +  S ++S+ +L  P  H Q  RPGI LYG +      +  +   V+    AR+I
Sbjct: 180 EQLM-LPLSASNSAALLRYPQSHAQRVRPGIMLYGSSPFDWQTASELGLAVSHRFTARVI 238

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            I    AGE V YG          +AV A+GY DGYP                G    + 
Sbjct: 239 AINAVEAGESVGYGATWTAAEPRQVAVVAVGYGDGYPRHA-----------PSGTPVAVN 287

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G +  ++G+++MDM   D+T  L   VGD ++++G  + +DDVA A GT +Y+L  +I  
Sbjct: 288 GNITELVGRVSMDMLTVDVTG-LDASVGDEVELWGDVVDVDDVARACGTISYELFCQITG 346

Query: 364 RYAKF 368
           R  + 
Sbjct: 347 RPERV 351


>gi|325571360|ref|ZP_08146860.1| serine/alanine racemase [Enterococcus casseliflavus ATCC 12755]
 gi|325155836|gb|EGC68032.1| serine/alanine racemase [Enterococcus casseliflavus ATCC 12755]
          Length = 700

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 97/368 (26%), Positives = 158/368 (42%), Gaps = 37/368 (10%)

Query: 15  ALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L   GV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRLIPAKTKVMAVVKADAYGCDAQLVARTLERVGVDFFAVATIEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  I S         L   G+     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELNRYSLIQTIVSEAHGQ---ALARTGLQIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D   +        Q+  F  L++   
Sbjct: 467 RLGVAPD--LETVRRLYALPSLKITGIFSHLGSSDQLDTASILRTQAQIICFDDLLAGLS 524

Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEAR 241
                     L SS GIL  P   +   RPGI L G     N+    +     ++T +A 
Sbjct: 525 ARNIAYGLTHLQSSYGILNYPEKQYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 584

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +   AGE + YG      R + I + +IGY DG P  LS    + S          
Sbjct: 585 LVDKKTVAAGEAIGYGLATVFDRPTTIGIVSIGYCDGVPRALSNQGFQLSY--------- 635

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV---ALASGTTNYDLL 358
            +G ++P +G I MDM + D+TD   + V  +++       + D    A  + T   +L+
Sbjct: 636 -QGVLLPQVGLICMDMLLIDLTDYPELAVESWLE------AISDWTNTADQAQTIPNELI 688

Query: 359 VRIGTRYA 366
            R+G+R  
Sbjct: 689 SRLGSRVP 696


>gi|332978217|gb|EGK14948.1| alanine racemase [Psychrobacter sp. 1501(2011)]
          Length = 392

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 100/397 (25%), Positives = 171/397 (43%), Gaps = 36/397 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S     + ++  AL +N    +NA+    +  A+VK +AYG G +   P+L       
Sbjct: 1   MRSAS---ITLNSAALTHNLTQVINAIPEKTKVLAMVKADAYGHGVKYCLPSLQK--ADG 55

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSC 118
             V    E  ++R    Q  + ++ G+   QE     +     +I    Q+ +  + +  
Sbjct: 56  LGVACFTEAKQIRDLGWQKVLVLIEGVFSQQEWAESIEAECQSIIHHQNQVQWALQQVPA 115

Query: 119 GVS--HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             S      L+++TG NRLG   +E +       +     +  + SH A AD P    N+
Sbjct: 116 SNSPCRTIWLKLNTGMNRLGFEPEELVSVAQTLVDAGYNLI--LTSHFANADRPEHPSNT 173

Query: 177 VQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228
            Q++ F   +          I+ASL +S+GI+  P  HF   RPGI LYG T       +
Sbjct: 174 NQIKMFTESLQDLREKVDPNIKASLCNSAGIINFPECHFDWVRPGIMLYGSTPLDGISAQ 233

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           S  ++ V++  A ++ I    AG  V YG +    R  +  + +IGY DGYP  + G   
Sbjct: 234 SLQLKPVMSFSASLMAIHNIAAGAHVGYGSRFVANRPIVKGIVSIGYGDGYPRVVDGSAW 293

Query: 289 E-------------HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335
                            +    G   ++ Y  P++G++ MDM   D+T+  +  VG  + 
Sbjct: 294 VSVQLAAHENETDIDRSTENDIGSTTVRRYKCPVIGRVAMDMIAIDLTEVPNPTVGCQVT 353

Query: 336 IFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKF 368
           ++G        +DD+A ++ T  Y+LL R+  R  + 
Sbjct: 354 LWGDPDEAAPSVDDIANSAHTLGYELLCRVTQRPIRI 390


>gi|163839626|ref|YP_001624031.1| alanine racemase [Renibacterium salmoninarum ATCC 33209]
 gi|162953102|gb|ABY22617.1| alanine racemase [Renibacterium salmoninarum ATCC 33209]
          Length = 385

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 165/385 (42%), Gaps = 35/385 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++     +DL  +++N   + +L        A+VK +A+G G   I+ A+  AG     V
Sbjct: 12  HDLATATVDLGIIESNVRFLKSLPDAERELIAIVKADAFGHGMIPISHAMLRAGADWLGV 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVS 121
             + E ++LR     A IF              + N+   ISS +  +       S G+S
Sbjct: 72  AHLSEAMELREAGITAPIFAWLATLDTDYHPGIEANIDLSISSRLDAVRIAEAASSVGMS 131

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFN---KKLGQLSLIISHLACADDPSSHVNSVQ 178
               L++DTG +R G  ++          +    K   ++ I SHL+   +     N +Q
Sbjct: 132 AKVHLKIDTGLHRAGSPVELWPQLLAEISSADWAKSLHVAGIWSHLSDPGEAEGKANGIQ 191

Query: 179 LERFRTLIS-----HYKGIEASLASSSGILLGPN-----YHFQLTRPGISLYGGTDKINK 228
            + F   ++       K     L+SS+ +              L+R G  LYG  D   +
Sbjct: 192 YQAFTEAVAVAASFGIKPEYLHLSSSASVGRFGKASPGTAQLNLSRAGAGLYGIDD---R 248

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              ++  +T E+RI+  R+  AG  VSYGG     R + +A+  +GYADG P  +     
Sbjct: 249 GVGVKPAMTLESRIMQFRRVPAGSAVSYGGDWVSDRATNLALVPLGYADGIPRCI----- 303

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344
                   G   F +G  +PI+G+I MD  + D T  L +EVGD + IFG     +    
Sbjct: 304 -------KGASVFCRGQRLPIVGRIAMDQFVVD-TGDLQLEVGDQVLIFGTGELGEPTAL 355

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           + A  +GT  +++   +G R A+ Y
Sbjct: 356 EWAQWAGTIEHEIYTGLGPRVARRY 380


>gi|224826258|ref|ZP_03699360.1| alanine racemase [Lutiella nitroferrum 2002]
 gi|224601359|gb|EEG07540.1| alanine racemase [Lutiella nitroferrum 2002]
          Length = 379

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 91/364 (25%), Positives = 160/364 (43%), Gaps = 24/364 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I L AL+ N+     L+G AR  AV+K +AYG G  ++A AL +     F +   ++ 
Sbjct: 7   VEIHLPALRRNYALAKTLAGAARVWAVLKSDAYGHGLTRVALALPD--ADGFALIQPDDA 64

Query: 69  VKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR     A+I +L G +  G   I     L  V+ S  QL +   L+         ++
Sbjct: 65  VTLRHAGIGAQILLLEGALEEGDVDIAAQHRLDLVLRSEHQLQW---LLQKARPVTVWVK 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           V+TG NR G + + AL            +++ +++H ACAD   + ++     RF  ++ 
Sbjct: 122 VNTGMNRFGFTPERALAVVRQLQATPFCRVAGLMTHFACADQLGTPLDEP-WRRFLQVV- 179

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEARII 243
              G+  + A+S+ +L     H  + R G  LY                  V+   ARI+
Sbjct: 180 EATGLPYTAANSAALLREARTHGAVARVGGLLYNNNPFYPDTRLWPMAAAPVMRFAARIV 239

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +    AG+ + YG       D  I +   GY DGYP +              G    + 
Sbjct: 240 HVSTLQAGDSIGYGAAFTARHDMRIGIVGAGYGDGYPRSA-----------PSGTPVLVN 288

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLLVRIG 362
           G    ++G++ M++   D++    ++VGD + ++G P +  D++A   GT + +L   + 
Sbjct: 289 GRRAALVGRVAMNVLAIDLSALPEVQVGDEVTLWGAPGLSCDEIAWRCGTISEELQCALT 348

Query: 363 TRYA 366
           +R  
Sbjct: 349 SRVP 352


>gi|237740856|ref|ZP_04571337.1| alanine racemase [Fusobacterium sp. 4_1_13]
 gi|229431153|gb|EEO41365.1| alanine racemase [Fusobacterium sp. 4_1_13]
          Length = 356

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 170/375 (45%), Gaps = 34/375 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L   GV+ F V ++
Sbjct: 2   RTWIEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    + +I +L      +        +   ISS+ QL F   L+   ++    
Sbjct: 62  EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQLQF---LVDKNLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + EA        N  L  L  I SHL+ +D     + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVNEAEKVIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKF 177

Query: 183 RTLISHYK-GIE-ASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           + +++     +E   +++S+GI     +    L R GI +Y  T    K+  ++ + T +
Sbjct: 178 KKIVNSLNLNLEYIHISNSAGITNFHNDILGNLVRLGIGMYSFTGN-KKTSYLKNIFTIK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R++ I+K      VSYG    L  DS  AV  IGYADG    LS            GG 
Sbjct: 237 SRVLFIKKVNKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGY 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN--- 354
             I  +   I+G I MDMTM  I   +   I++G+ + +   DI LD++           
Sbjct: 286 VLINNHRCEIIGNICMDMTMIRIPKEIENSIKIGNEVTVINADI-LDNLN-----IPELC 339

Query: 355 -YDLLVRIGTRYAKF 368
            ++ +  IG R  + 
Sbjct: 340 VWEFMTGIGKRVKRI 354


>gi|283783501|ref|YP_003374255.1| alanine racemase [Gardnerella vaginalis 409-05]
 gi|283441514|gb|ADB13980.1| alanine racemase [Gardnerella vaginalis 409-05]
          Length = 459

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 96/406 (23%), Positives = 167/406 (41%), Gaps = 44/406 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGN--------ARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ++ +DL AL++N  ++ A                 VVK   YG G    A A    G   
Sbjct: 33  QVIVDLKALRDNMRTLVARVSQDLQPGQNAPEVMGVVKAGGYGHGLIPSALAALAGGATW 92

Query: 60  FFVTSVEEGVKLRLYTPQA-RIFVLYGIHPG---QEKIIFDTNLIPVISSVPQLTFYS-K 114
                  E ++LR     + R  +L  +      +   +   ++   + S+  L   +  
Sbjct: 93  LGTAQPYEALRLRAVGIDSSRCHILTWLTSAPTTRFADLITADIDISVGSIDSLDAVAFA 152

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171
               G      ++VDTGF R G + +    AL+      ++ + ++    SHLA AD P 
Sbjct: 153 ARKLGKPARVHVKVDTGFGRNGFTPEGFCAALEKLQQYSSEGVIEVIGQWSHLAVADSPD 212

Query: 172 SH----VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGG 222
                     Q+++F       K          LA+++  L  P   F+L RPGI LYG 
Sbjct: 213 VPEFVDATDRQIQQFHEFTKRMKEASVAPKIRHLANTAATLNRPEIRFELVRPGIGLYGY 272

Query: 223 TDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
                    +++ +Q  +T +A++  ++    G  +SYG       ++  A+  +GYADG
Sbjct: 273 EPDPAMGNSQTYGLQPAMTLQAQLGTVKTVEEGHGISYGRTYLTPNNTSTAIVPLGYADG 332

Query: 279 YPLTLSGLDSEHSPSVFL-GGKGFI---KGYM-VPILGKITMDMTMFDITDS---LSIEV 330
              + SG D + +  V   GG   +    G   V + G++ MD  + D+      L +  
Sbjct: 333 ILRSASGFDMQGARHVNKPGGPVRVETKNGARIVNVSGRVCMDQFIVDLKGDASELGVLE 392

Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G+ + +FGP       +   DD A A+GT +Y+++  IG R  + Y
Sbjct: 393 GNTVTLFGPGRGLEFAEPTADDWAEAAGTISYEIMTGIGPRVPRLY 438


>gi|218886445|ref|YP_002435766.1| alanine racemase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|254802361|sp|B8DRL1|ALR_DESVM RecName: Full=Alanine racemase
 gi|218757399|gb|ACL08298.1| alanine racemase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 372

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 171/375 (45%), Gaps = 29/375 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +++ L AL+ N+ ++  +S  A    V+K +AYG G   +A  L  AG   F   +V E 
Sbjct: 10  VRVRLGALRRNFETLRRMSPAA--MPVIKSDAYGHGLLPVARTLEAAGADAFAAGTVGEC 67

Query: 69  VKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            +LR      RI  +L        +     +++P + S  QL   +   + G     AL+
Sbjct: 68  AQLRDGGIPGRIVALLGATDAADAECCVARSIVPAVYSADQLEMLAGRAAPGQQVDIALK 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLI 186
            DTG  RLG S  +          + + +  L++SHLA +DDPS S     Q E F  ++
Sbjct: 128 FDTGMARLGFSEADLPALLDRLHARPMLRPVLVMSHLAVSDDPSRSDFTRQQGEAFGRIL 187

Query: 187 SHYKGIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVVT 237
           +  +        SLA+S+ +L  P  HF + RPGI+LYG        + +    +Q  + 
Sbjct: 188 AGVRADWPAAQGSLANSAALLAHPELHFDVQRPGIALYGANPLRGTAQEHLGDGLQPAMD 247

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A I+ +    AG  +SYG      RD  +A+ A GYAD Y   LSG            
Sbjct: 248 VAAPILQVHPLPAGRSISYGRTFTAPRDMTVAIVATGYADAYSRGLSG-----------K 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF---GPDIKLDDVALASGTTN 354
           G   + G  VPILG++ M MT  D+TD   +  GD   +    G  +  D++A   GT +
Sbjct: 297 GAMTVHGRRVPILGRVCMQMTAVDVTDVPGVAAGDDAYLLGGPGEALTPDELADLWGTIS 356

Query: 355 YDLLVRIG--TRYAK 367
           Y++L  +G   R  +
Sbjct: 357 YEVLCLLGMNPRTHR 371


>gi|94986479|ref|YP_594412.1| alanine racemase, catabolic [Lawsonia intracellularis PHE/MN1-00]
 gi|166969415|sp|Q1MSD5|ALR_LAWIP RecName: Full=Alanine racemase
 gi|94730728|emb|CAJ54090.1| alanine racemase, catabolic [Lawsonia intracellularis PHE/MN1-00]
          Length = 380

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 176/382 (46%), Gaps = 33/382 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+S+  + +KI L  L+ N   + +   N     V+K NAYG G   +A  L + GVQ  
Sbjct: 1   MYSSS-VCIKIHLERLRYNLRILRSRYPN--VMPVIKANAYGHGIRVVANVLRDEGVQHM 57

Query: 61  FVTSVEEGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLT---FYSKLM 116
            V S+ EG  LR    QA +  +L        +I    N+ PVI ++  L     YS++ 
Sbjct: 58  AVGSITEGFLLRQEGHQAFLLALLGPFSEEDARIAVVHNITPVIHNIESLQSIVHYSRVH 117

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVN 175
             G + P A+++DTG  RLG S  + +       +       L++SHL   +  S  +V 
Sbjct: 118 QGGTAVPVAIKIDTGMGRLGFSSNDYISLIDLLRHTPEVNPILLLSHLVAPEISSLDNVT 177

Query: 176 SVQLERF----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH- 230
             Q+E+F    + +   +  I+ SL +S G+L  PNY    +RPGI+LYGG      S  
Sbjct: 178 HNQVEQFARAYKAIKEAFPTIKTSLTNSPGLLAWPNYIGDFSRPGIALYGGNPFYGTSRV 237

Query: 231 ----PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                   V+  EA ++ I    AG  + YG       D  +AV   GYADGY  + S  
Sbjct: 238 SLGKGFLPVMEVEAPVVAINTVSAGSSIGYGCTYYAKEDIRVAVIGAGYADGYSRSFSN- 296

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPD----I 341
                      G   IKG    I+G++ M M M DIT+S S I +GD   + G      I
Sbjct: 297 ----------KGWVVIKGKRYRIVGRVCMQMLMVDITNSHSKISIGDKAFLLGGGGSLAI 346

Query: 342 KLDDVALASGTTNYDLLVRIGT 363
           K +++A   GT  +++   +G+
Sbjct: 347 KPEELAEWWGTIPHEVCCSLGS 368


>gi|282934109|ref|ZP_06339388.1| alanine racemase [Lactobacillus jensenii 208-1]
 gi|281301856|gb|EFA94121.1| alanine racemase [Lactobacillus jensenii 208-1]
          Length = 337

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 82/349 (23%), Positives = 138/349 (39%), Gaps = 29/349 (8%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF 95
           +K NAYG G  K+A      G + F V  ++E  +LR  +    I VL      +  I  
Sbjct: 1   MKANAYGHGAVKVAKMAARNGAEGFCVAVLDEAFELRDSSIVDPILVLGVTPANEACIAA 60

Query: 96  DTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKK 153
             N+     S+  L      L    +     L +D+G  R+G S  QE +       N  
Sbjct: 61  AHNISLTAPSLEWLEAADKALAKKDMVLKIHLAIDSGMGRIGFSEDQEFIAANEFLRNST 120

Query: 154 LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEASLASSSGILLGPNYHFQ 211
              +  + +H A AD   SH    Q++RF  L +    K     +A+++  +   N H  
Sbjct: 121 HFIVEGMFTHFASADSRDSHYFDYQVKRFNHLKNILSIKPKWIHVANTASSIFDKNIHSD 180

Query: 212 LTRPGISLYGGTDKINKSHPM-------QTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
           + R GI LYG     N + P        +  ++  + +  ++K  +G  + YG       
Sbjct: 181 IVRFGIGLYGLNPSSNPASPDLESEINLKPALSLVSELSFVKKVHSGYGIGYGSTYVADS 240

Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324
           D  I    +GYADG    LSG   +            +  +  PI+G+I MD  M  + +
Sbjct: 241 DQWIGTVPVGYADGVIRKLSGFKIK------------VGAHYCPIVGRICMDQLMVLLPE 288

Query: 325 SLSIEVGDYIQIFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
            + +  G  + I+  + +    +   A    T +Y+L   +  R  + Y
Sbjct: 289 KMPV--GTKVVIYSNNPEDPNFIKKAADYVDTIHYELACLLSDRLPRIY 335


>gi|227497232|ref|ZP_03927472.1| alanine racemase [Actinomyces urogenitalis DSM 15434]
 gi|226833280|gb|EEH65663.1| alanine racemase [Actinomyces urogenitalis DSM 15434]
          Length = 441

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 97/413 (23%), Positives = 166/413 (40%), Gaps = 67/413 (16%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL AL +N   + + +G A   AVVK +AYG G E +A    +AG     V  ++E + 
Sbjct: 38  IDLEALAHNARVLASKAGRAW-MAVVKADAYGHGIEAVARTCLDAGASWLGVAQLDEALH 96

Query: 71  LR----LYTP------------QARIFVLYGIH---PGQEK-------IIFDTNLIPVIS 104
           LR                    QA   + + +    P Q              +L   +S
Sbjct: 97  LRGLLDAAGVARPRSADEPASSQAPRLLCWLVPVLSPQQAAREGSPLWEALAGDLDLSVS 156

Query: 105 SVPQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLI 160
           ++ QL        + GV     ++VDTG +R G  L++       +   +      +  +
Sbjct: 157 TLTQLQAVRVAARAQGVVARIHVKVDTGMSRAGAVLEDLPALAREARAAQDAGEVDVVGL 216

Query: 161 ISHLACADDPSSHVNSVQLERFR--TLISHYKGIEA---SLASSSGILLGPNYHFQLTRP 215
            SHL+ AD+P S      L RFR    I +  G+      L+++ G+   P+    L R 
Sbjct: 217 WSHLSRADEPDSGSTEDHLARFRRGEQILNQAGLHPGVRHLSATGGLEWHPHARLDLVRI 276

Query: 216 GISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
           GI LYG + +      +   ++ V+  +A ++ +++  AG+ VSYGG      D  + + 
Sbjct: 277 GIGLYGFSPEPAVATSQELGLRPVMRLQAPLVQVKRIPAGQAVSYGGTWSAPTDRWVGLV 336

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS------ 325
            +GY DG P   +             G  ++ G    ++GK+ MD  + D+  +      
Sbjct: 337 PLGYGDGIPRAAAST-----------GPVWVAGRRTTVVGKVCMDQVVIDLGPATDAAGS 385

Query: 326 ---LSIEVGDYIQIFGPD-------IKLDDVALASGTTNYDLLVRIGTRYAKF 368
                   GD   ++G            +D A    T +Y++L R+G R  + 
Sbjct: 386 PLPAPAAAGDRAIVWGDPDRDGEGVPTAEDWARVCSTISYEILTRLGPRVPRV 438


>gi|205354317|ref|YP_002228118.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274098|emb|CAR39107.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326629441|gb|EGE35784.1| alanine racemase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 358

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 106/362 (29%), Positives = 164/362 (45%), Gaps = 25/362 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           V LR      A + +L G+ P    +     + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRKILSADAMVVLLNGVMPQAMPLCCAQQITPLLNSVDQVMAWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +R                 +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSR----------LAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 183

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+G   +   S P++   T    I+ ++
Sbjct: 184 EAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLSILRVQ 242

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L                   +G  
Sbjct: 243 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNLRPPAG-----------VCWRGVR 291

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D    +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 292 LPVLGRVCMDSFMVDARAIMP-TPGDVVEFIGVSQTLEEVAAACDTIPYEIMTRLGGRFR 350

Query: 367 KF 368
           + 
Sbjct: 351 RI 352


>gi|148273757|ref|YP_001223318.1| putative alanine racemase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831687|emb|CAN02656.1| putative alanine racemase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 566

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 164/378 (43%), Gaps = 31/378 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DL A+++N  ++ AL+  ART   VK +AYG G  ++A A   AG +   V  V  
Sbjct: 17  RAVVDLDAIRHNVRTLAALAAPARTMVAVKADAYGHGALQVARAALEAGAESLAVLDVAS 76

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
            V+LR     AR+           ++  +  +   +S++ +L   +    + G+     L
Sbjct: 77  AVELRRSGITARLLAWLHGVDTDFRVAVENGIDLGVSALWELERIAAAGRATGIRARVHL 136

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQ---LSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG +R G + +   D    +          L  + SHLA A           L RF 
Sbjct: 137 KADTGLSRNGATPELWPDLVRAAVAADAAGELTLHALWSHLADASPEDDDAA---LARFH 193

Query: 184 TLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TV 235
             +        + +E  LA+SS  +  P   F + R GI++YG +   ++S         
Sbjct: 194 EAVRVAEELGARPVEKHLAASSAGIRLPAARFDMVRFGIAVYGISPFDDRSGRDLGLIPA 253

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T EA ++ +++  AG  VSYG   +    S + +  +GYADG P   +   S       
Sbjct: 254 MTLEADVVSVKRVEAGHGVSYGLDHRTAGPSTLVLVPLGYADGIPRIAAPRAS------- 306

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
                 + G   P+ G+I MD  + D+ D   +EVGD   I GP    +   ++ A  + 
Sbjct: 307 ----VLLNGRRFPVAGRIAMDQLVLDVGDLP-VEVGDTAVILGPGDRGEPTAEEWAGWAE 361

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T   +++ R+G R  + +
Sbjct: 362 TIGDEIVTRVGPRVDRVH 379


>gi|257468004|ref|ZP_05632100.1| alanine racemase, biosynthetic [Fusobacterium ulcerans ATCC 49185]
 gi|317062290|ref|ZP_07926775.1| alanine racemase [Fusobacterium ulcerans ATCC 49185]
 gi|313687966|gb|EFS24801.1| alanine racemase [Fusobacterium ulcerans ATCC 49185]
          Length = 364

 Score =  318 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 105/371 (28%), Positives = 163/371 (43%), Gaps = 26/371 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              L+ID+  LK N + +  L        V+K N+YG G  + A  L   GV+ F V S+
Sbjct: 2   RAWLEIDMDNLKYNLNKIKELVQGTNVLGVIKANSYGFGAIETAKELSKNGVEIFGVASL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++LR    +  I +L  +   + +I  + N    ISS+ Q+ F     S  ++    
Sbjct: 62  EEAMELREGGIEEEILILGSLFNDEIEIAAEKNFQITISSMRQIEFLE---SNKINAEIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERF 182
           +++DTG  RLG + ++          K +  +  I SHL+ AD  S         Q+ +F
Sbjct: 119 IKIDTGMGRLGFTPEKGKKAVDYCIEKGIKAV-GIYSHLSDADGMSDEAYNYTKEQINKF 177

Query: 183 RTLISHYKGIE-ASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           +     YK I+   + +S GIL     +   L R GI +YG           + V T + 
Sbjct: 178 KIF-EEYKNIKYIHILNSGGILRFNDGFKGNLVRAGICMYGMLGNERMP-GFKRVFTMKT 235

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RI+ IR       +SYG   KL      A  AIGYADG     S                
Sbjct: 236 RILFIRTLEEDSYISYGRTVKLKEGETFATLAIGYADGMKKEFSN-----------KTYA 284

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
            I+G   PI+G+I MDM M  I +S+   I +G    +   DI ++++  +   + +D+L
Sbjct: 285 LIEGEKCPIVGEICMDMCMVKIPESILKKINIGTEAIVIRDDI-IEEI-NSVHKSTWDIL 342

Query: 359 VRIGTRYAKFY 369
             IG R  + Y
Sbjct: 343 TGIGRRVYRVY 353


>gi|315091525|gb|EFT63501.1| alanine racemase [Propionibacterium acnes HL110PA4]
          Length = 352

 Score =  318 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 140/361 (38%), Gaps = 24/361 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIF 81
           M   +G+ +    VK +AYG G  +++  +          V +V EG +L        I 
Sbjct: 1   MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGIPLPIL 60

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQ 140
                 P        + +   +     L   SK     GV+    + VD+G  R+GL  +
Sbjct: 61  NPPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHIAVDSGMGRIGLCPE 120

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTLIS-----HYKGIEA 194
              + T  +   K  ++  + +HL  +D P        +++ F T +S            
Sbjct: 121 RLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVSLVETHRGPFPLV 180

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVTAEARIILIRKALAGEL 253
            LA+S  IL        + R GI  YG     +     +   ++  + +  ++    G+ 
Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWISHVTFVKTVSVGDT 240

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           + YG     +  + IA   +GYADG    LS             G   I+G + PI+G+I
Sbjct: 241 IGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGYVLIRGSVHPIVGRI 289

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            MD  M D+    ++ VGD + + G      +  DD+A   GT +Y++   I  R  + +
Sbjct: 290 CMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISYEITCAISKRVNRCW 349

Query: 370 T 370
            
Sbjct: 350 V 350


>gi|326560246|gb|EGE10634.1| alanine racemase [Moraxella catarrhalis 7169]
 gi|326566436|gb|EGE16586.1| alanine racemase [Moraxella catarrhalis BC1]
 gi|326570243|gb|EGE20288.1| alanine racemase [Moraxella catarrhalis BC8]
 gi|326570980|gb|EGE21004.1| alanine racemase [Moraxella catarrhalis BC7]
          Length = 380

 Score =  318 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 170/382 (44%), Gaps = 30/382 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M S     + I   AL +N   +   L    +  A+VK +AYG G +   PAL +     
Sbjct: 1   MRSTS---ITIHPNALTHNLQIIKSQLDRTTKVLAMVKADAYGHGIDATIPALIH--ADG 55

Query: 60  FFVTSVEEGVKLRLYTP----QARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQ--LTFY 112
           F V  + E + ++        +  I ++ G     + K+  D +   +I    Q      
Sbjct: 56  FGVACLSEAMAVKQVLDGMNHKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALS 115

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            +       H   L+ +TG +RLG +    +    +  +   G   ++ SH ACADD S 
Sbjct: 116 HRPKQDQFCHTIWLKYNTGMSRLGFNDDHIITAAKSLADA--GYRLILTSHFACADDKSH 173

Query: 173 HVNSVQLERFRTLISHYKGIEA----SLASSSGILLGPNYHFQLTRPGISLYGG---TDK 225
            +N+ Q+ +F   ++  +        SL +S+GI    + H    R GI+LYG    TD+
Sbjct: 174 PLNAQQISKFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQ 233

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             K+  +   +T  A+++ I    AG+ + Y       +   IAV +IGY DGYP  + G
Sbjct: 234 SAKALNLMPAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMG 293

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                + +           ++  I+G++ MDM M DI D L I +   + ++G    +D+
Sbjct: 294 AKVSVTDTSG-------NRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDE 345

Query: 346 VALASGTTNYDLLVRIGTRYAK 367
           VA+ +GT  Y+L+ R+ TR  +
Sbjct: 346 VAMCAGTIGYELMCRLTTRPKR 367


>gi|170780960|ref|YP_001709292.1| putative alanine racemase fusion protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155528|emb|CAQ00640.1| putative alanine racemase fusion protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 578

 Score =  318 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 97/378 (25%), Positives = 165/378 (43%), Gaps = 31/378 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL A+++N  ++ AL+  ART   VK +AYG G  ++A A   +G +   V  V  
Sbjct: 19  RAVIDLDAIRHNVRTLAALAAPARTMVAVKADAYGHGALQVARAALESGAESLAVLDVAS 78

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
            V+LR     AR+           ++  +  +   +S++ +L   +    + G+     L
Sbjct: 79  AVELRRAGIDARLLAWLHGVDTDFRVAVEEEIDLGVSALWELKRIAAAGRATGIRARVHL 138

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQ---LSLIISHLACADDPSSHVNSVQLERFR 183
           + DTG +R G + +   D    +          L  + SHLA A           L RFR
Sbjct: 139 KADTGLSRNGATPELWPDLVRAAVAADSAGELTLHALWSHLADASPEDDDAA---LARFR 195

Query: 184 TLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TV 235
             +        + +E  LA+SS  +  P   F + R GI++YG +   ++S         
Sbjct: 196 EAVRVAEELGARPVEKHLAASSAGIRLPAARFDMVRFGIAVYGISPFDDRSGRDLGLIPA 255

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T EA ++ +++  AG  VSYG   +    S + +  +GYADG P   +   S       
Sbjct: 256 MTLEADVVSVKRVEAGHGVSYGLDHRTAGPSTLVLVPLGYADGIPRIAAPRAS------- 308

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
                 + G   P+ G+I MD  + D+ D   +EVGD   I GP    +   ++ A  + 
Sbjct: 309 ----VLLNGRRFPVAGRIAMDQLVLDVGDLP-VEVGDTAVILGPGDRGEPTAEEWAGWAE 363

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T   +++ R+G R  + +
Sbjct: 364 TIGDEIVTRVGPRVDRVH 381


>gi|159044921|ref|YP_001533715.1| alanine racemase [Dinoroseobacter shibae DFL 12]
 gi|226711041|sp|A8LRT3|ALR_DINSH RecName: Full=Alanine racemase
 gi|157912681|gb|ABV94114.1| alanine racemase [Dinoroseobacter shibae DFL 12]
          Length = 349

 Score =  318 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 176/365 (48%), Gaps = 28/365 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L IDL A+  NW +++  + N R A  AVVK + YGL   ++A  L  AG + FFV   E
Sbjct: 6   LSIDLDAIAANWRALDR-ASNRRVATGAVVKADGYGLDAGRVARTLAQAGARQFFVAVAE 64

Query: 67  EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EGV LR    P   I V  G   G  + I    L P+I+S  Q    ++       HP+ 
Sbjct: 65  EGVTLRKALGPGPAINVFSGHMEGDTQAIAGARLTPMINSAEQ---LARHFEALPRHPFG 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +Q+DTG NRLG+   E       +  +      L++SHLACAD+P    N+ QL  F  L
Sbjct: 122 IQLDTGMNRLGMEADEWAAVAEFALGQG---PKLVMSHLACADEPGHAANAAQLAEFHRL 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                 +  SL+++ GILLG  YHF +TRPGI LYGG          + VV     ++ +
Sbjct: 179 TDGI-TVPRSLSATGGILLGEAYHFDMTRPGIGLYGGAPFGAA----EPVVRLSIPVVQV 233

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AGE V YG       D  IA  + GYADG    +S     ++  V           
Sbjct: 234 RAVTAGESVGYGCSWVAQSDGAIATLSAGYADGLIRAMSNRAMLYAGDVA---------- 283

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
             P+ G+++MD+   D++    +     + +  P   +D +A A+GT  Y++L  +G RY
Sbjct: 284 -CPLAGRVSMDLLTVDVSHLDEVPE--ALDLLCPAQGVDRLAEAAGTIGYEILTSLGPRY 340

Query: 366 AKFYT 370
           A+ Y 
Sbjct: 341 ARHYA 345


>gi|212696143|ref|ZP_03304271.1| hypothetical protein ANHYDRO_00679 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676772|gb|EEB36379.1| hypothetical protein ANHYDRO_00679 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 367

 Score =  318 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 156/378 (41%), Gaps = 33/378 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  N  L   +DL  + NN   +   S N++  AV+K + YGLG  +IA  + +  +   
Sbjct: 1   MQENYLL---VDLDKILNNIKLIKEKSINSKICAVLKADGYGLGALEIAKYINDQ-IDYI 56

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V   +E   LR       I +L  +   + K+    N+   I  +    +  K+    +
Sbjct: 57  AVAQFKEAKYLRENGIDKPILILGYLPIDKYKVCSSLNIDVGIYDLD---YARKINESIL 113

Query: 121 S-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 + +DTG  RLG    E ++        K        SH A AD+       +Q 
Sbjct: 114 DTINCHILLDTGHTRLGFRDFE-IEKIKELKKFKKLNFIGAFSHFATADEKDLTYTKIQY 172

Query: 180 ERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ-- 233
           ++F  +I   K         +++++  +   N+   L R GI +YG           +  
Sbjct: 173 QKFTYIIEKIKDDFDLKLVHISNTAASMEY-NFKSDLLRLGIGIYGIYPSDYIREISKIK 231

Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
              V   +A+I  I+    G  +SYG      +D  +A  +IGYADG+  + S +     
Sbjct: 232 LCQVFEFKAQISFIKDVRKGTSISYGRTYIAPKDIKVATVSIGYADGFKRSFSNI----- 286

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G+  + G +  ++G++ MD  M D++     ++GDYI ++ PDI  +  A    
Sbjct: 287 ------GEVLVNGKIAKVVGRVCMDQIMIDVSGI-DCKIGDYITLY-PDIYKE--ANKIH 336

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  Y+L+  I  R  + Y
Sbjct: 337 TIAYELMTSISNRVPRIY 354


>gi|332798388|ref|YP_004459887.1| alanine racemase [Tepidanaerobacter sp. Re1]
 gi|332696123|gb|AEE90580.1| Alanine racemase [Tepidanaerobacter sp. Re1]
          Length = 380

 Score =  318 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 77/342 (22%), Positives = 143/342 (41%), Gaps = 23/342 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+L  + +N +++  L GN    AVVK NAY     +++  +   G     V  +EEG
Sbjct: 10  LEINLDTIASNTNNIKRLIGNKELMAVVKGNAYTHDMIEVSKTVLKNGASRLGVGRLEEG 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127
           + LR     A I  +     GQE+ I   ++   +  +  +   S +      S    ++
Sbjct: 70  IYLRKAGITAPILNMCLNMEGQEREIVKYDIAQTVCDLDTVHRLSCEAAKMNKSAKIHVK 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG  R+G+  ++AL+F       +  ++  + +H A          S QL+ F +++ 
Sbjct: 130 IDTGMGRIGIFPEDALNFISEVSAMQNIEIEGVYTHFATPH--DKEFMSYQLKLFSSVLK 187

Query: 188 HYKGIEA-----SLASSSGILLGPNY--HFQLTRPGISLYGGTDKINKSHPMQT--VVTA 238
                         ASS   +  P+    F + R G  +YG  +   +   ++     T 
Sbjct: 188 RLNQEGYSIPLKHCASSEAFVAMPDTWEKFDMVRIGDLIYGVYNSEEEKDKIKVNFAQTF 247

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           +  I+ ++K      + Y       +D++IA    GY DGY    S             G
Sbjct: 248 KTTIVFLKKLGPNTSIGYDRTYITDKDTIIATLPAGYNDGYTKLYSN-----------NG 296

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
              ++G   P++G++  D  M D+T+    +VGD + ++G  
Sbjct: 297 IVLVRGKKAPVVGRVCADQMMIDVTNIQDAKVGDEVVLWGRQ 338


>gi|253583474|ref|ZP_04860672.1| alanine racemase [Fusobacterium varium ATCC 27725]
 gi|251834046|gb|EES62609.1| alanine racemase [Fusobacterium varium ATCC 27725]
          Length = 364

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 161/373 (43%), Gaps = 30/373 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              L+ID+  LK N + +  L        V+K N+YG G  +IA  L   G++ F V S+
Sbjct: 2   RAWLEIDMDNLKYNLNKIKELVHGTNVLGVIKANSYGFGAIEIAKELSKFGIEIFGVASL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++LR    +  I +L  +   + +I  +      +SS+ Q+ F     S  +     
Sbjct: 62  EEAMELREGGIEEEILILGSLFNDEIEIAAEKKFQITVSSMRQIEFLE---SNKIDAEIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERF 182
           +++DTG  RLG +  E         N+ L ++  I SHL+ AD  +         Q+ +F
Sbjct: 119 IKIDTGMGRLGFTPSEGRKAVDYCINRGL-KVVGIYSHLSDADGMNDEAYNYTKEQINKF 177

Query: 183 RTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           +    +       + +S GIL     +   L R GI +YG           + V T + R
Sbjct: 178 KIFEEYKTIKYIHILNSGGILRFNDGFKGNLVRAGICMYGMLGNERVP-GFKRVFTMKTR 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I+ IR       +SYG   KL +    A  AIGYADG     S                 
Sbjct: 237 ILFIRTLEEDSYISYGRTIKLKKGETFATLAIGYADGMKKEFSN-----------KTYAL 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTN---YD 356
           I+G   PI+G+I MDM M  I +S+   I +G    +   DI ++++     + +   +D
Sbjct: 286 IEGEKCPIVGEICMDMCMVKIPESILKKINIGTEAIVIRDDI-IEEI----NSIHKSTWD 340

Query: 357 LLVRIGTRYAKFY 369
           +L  IG R  + Y
Sbjct: 341 ILTGIGRRVYRVY 353


>gi|158423689|ref|YP_001524981.1| alanine racemase [Azorhizobium caulinodans ORS 571]
 gi|158330578|dbj|BAF88063.1| alanine racemase [Azorhizobium caulinodans ORS 571]
          Length = 393

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 190/374 (50%), Gaps = 33/374 (8%)

Query: 9   LKIDLTALKNNWHSMNA---------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           L IDL AL  N+  +           +              YGLG   ++  LY  G + 
Sbjct: 39  LTIDLGALARNYRKLKETAAPAAVAAVVKADA---------YGLGAGLVSERLYAEGCRH 89

Query: 60  FFVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117
           FFV    E V+LR   P +A + VL G+ PG+E+   D  + PVI+ + Q   ++ +   
Sbjct: 90  FFVAHFVEAVRLRPTLPVEATLLVLNGLMPGEEEHAADLGVTPVINCLEQAAAWATEAKV 149

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G     A+Q+DTG +RLGLS  +      +S   +  +  L++SHLACAD P++  ++ 
Sbjct: 150 RGTRLKAAIQIDTGMSRLGLSEADVASLRADSLFAEAVEPILLMSHLACADTPAAPASAG 209

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           QL   + + +H+ G+  SLA+S G+ LG  +HF L RPGI++YGG    + ++PM+ VV 
Sbjct: 210 QLAVMQRVAAHFPGLPVSLANSGGVFLGGAFHFALARPGIAVYGGAPVSDVANPMEPVVR 269

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  +I  R   AG  V YGG    T ++ +A  + GYADG P  LS             
Sbjct: 270 IDIPVIQARTVPAGTAVGYGGTFVTTGETRLATLSGGYADGIPRHLSSS----------- 318

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNY 355
           G  + +G  +PI G+++MD    D +      + +G  ++  GP   L+ VA  +GT +Y
Sbjct: 319 GALYYQGVRLPIAGRVSMDSLTVDASALPEGGLRLGTMVEFVGPSQSLEQVAADAGTISY 378

Query: 356 DLLVRIGTRYAKFY 369
           ++L R+G RY + Y
Sbjct: 379 EILTRLGRRYRRVY 392


>gi|118602666|ref|YP_903881.1| alanine racemase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567605|gb|ABL02410.1| alanine racemase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 350

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 106/359 (29%), Positives = 167/359 (46%), Gaps = 21/359 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             I  +ALK+N   +   S N R  ++VK NAYG   + I P + ++      V+ + E 
Sbjct: 5   ASISQSALKHNLSVVKKNSLNTRIVSMVKANAYGHHIDLIDPIINHS--DLLGVSEILEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            KLR  T    I +L G+   QE +     N   V+    Q    S + +   +    ++
Sbjct: 63  EKLRKTT-NQPILLLSGVIKDQELQQAIKLNCQIVVHDKTQ---LSVVNNTKQAIDIWIK 118

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NRLGLS  E         N  L  +  I+SH ACAD+ +  +N  QL  F+ L  
Sbjct: 119 INTGMNRLGLSTNEYNHCIKLLGNNPLINIQCIMSHFACADEINHPMNQSQLFEFKKLTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
                + S+A+S+ IL     HF   RPGI LYG +     +H ++ V+   A I+ I+ 
Sbjct: 179 PVVA-KRSMANSAAILSNSASHFDYVRPGIMLYGVSPFNIINHNLKPVMQLSAPIMSIKT 237

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             A + V YG      + + IA   IGY DGYP                G    I   + 
Sbjct: 238 IKADDSVGYGVTWTADKSTAIATIGIGYGDGYPRHAKN-----------GTPVLINNTLC 286

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++MD+   DI++  +  VGD   ++G   ++++ +A  S T  Y+LL  I +R 
Sbjct: 287 PLVGRVSMDLICVDISNI-NASVGDNAILWGNKQLRIETIAKHSATIAYELLAGISSRV 344


>gi|83952042|ref|ZP_00960774.1| alanine racemase [Roseovarius nubinhibens ISM]
 gi|83837048|gb|EAP76345.1| alanine racemase [Roseovarius nubinhibens ISM]
          Length = 345

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 131/362 (36%), Positives = 184/362 (50%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A   NW +++A + +  TAAVVK +AYGLG +K+A AL  AG + FFV   EEG
Sbjct: 6   LTIDLNAAVANWRALDAKT-DCETAAVVKADAYGLGADKLARALARAGARSFFVAVAEEG 64

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             LR    P   I V  G  PG   +I D  L P+I+S+ Q+    + +     H + LQ
Sbjct: 65  AALRQALGPGPNICVFSGHMPGDADMIGDLELTPMINSLDQM---IRHVEALPGHAFGLQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+   E       +  +      LI+SHLACAD+P   +N+ QL  FR +  
Sbjct: 122 LDTGMNRLGMEPSEWAAVRDVALAQN---PVLIMSHLACADEPDHPMNAQQLRTFREMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ G+LLG +YHF L RPGI  YGG       H    V T +  +I  R 
Sbjct: 179 GL-DVPRSLANTGGVLLGRDYHFDLCRPGIGTYGGAPFAEARH----VATLDIPVIQCRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG     +R + IA  + GYADG    +                 +  G  +
Sbjct: 234 VAPGETVGYGNSYVASRPTRIATISAGYADGILRAMG-----------PKTGLWCDGKRL 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI G+I+MD+   D+T          +Q+ GP+  +D +A A+GT  Y++L  +G RY +
Sbjct: 283 PIAGRISMDLIGVDVTALGQDPK--SLQLLGPNQGVDTLADAAGTIGYEILTSLGARYTR 340

Query: 368 FY 369
            Y
Sbjct: 341 RY 342


>gi|298252575|ref|ZP_06976369.1| alanine racemase [Gardnerella vaginalis 5-1]
 gi|297532939|gb|EFH71823.1| alanine racemase [Gardnerella vaginalis 5-1]
          Length = 442

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 96/406 (23%), Positives = 167/406 (41%), Gaps = 44/406 (10%)

Query: 8   RLKIDLTALKNNWHSMNALSGN--------ARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ++ +DL AL++N  ++ A                 VVK   YG G    A A    G   
Sbjct: 16  QVIVDLKALRDNMRTLVARVSQDLQPGQNAPEVMGVVKAGGYGHGLIPSALAALAGGATW 75

Query: 60  FFVTSVEEGVKLRLYTPQA-RIFVLYGIHPG---QEKIIFDTNLIPVISSVPQLTFYS-K 114
                  E ++LR     + R  +L  +      +   +   ++   + S+  L   +  
Sbjct: 76  LGTAQPYEALRLRAVGIDSSRCHILTWLTSAPTTRFADLITADIDISVGSIDSLDAVAFA 135

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171
               G      ++VDTGF R G + +    AL+      ++ + ++    SHLA AD P 
Sbjct: 136 ARKLGKPARVHVKVDTGFGRNGFTPEGFCAALEKLQQYSSEGVIEVIGQWSHLAVADSPD 195

Query: 172 SH----VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGG 222
                     Q+++F       K          LA+++  L  P   F+L RPGI LYG 
Sbjct: 196 VPEFVDATDRQIQQFHEFTKRMKEASVAPKIRHLANTAATLNRPEIRFELVRPGIGLYGY 255

Query: 223 TDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
                    +++ +Q  +T +A++  ++    G  +SYG       ++  A+  +GYADG
Sbjct: 256 EPDPAMGNSQTYGLQPAMTLQAQLGTVKTVEEGHGISYGRTYLTPNNTSTAIVPLGYADG 315

Query: 279 YPLTLSGLDSEHSPSVFL-GGKGFI---KGYM-VPILGKITMDMTMFDITDS---LSIEV 330
              + SG D + +  V   GG   +    G   V + G++ MD  + D+      L +  
Sbjct: 316 ILRSASGFDMQGARHVNKPGGPVRVETKNGARIVNVSGRVCMDQFIVDLKGDASELGVLE 375

Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G+ + +FGP       +   DD A A+GT +Y+++  IG R  + Y
Sbjct: 376 GNTVTLFGPGRGLEFAEPTADDWAEAAGTISYEIMTGIGARVPRLY 421


>gi|44805037|gb|AAS47779.1| racemase [Clostridium innocuum]
          Length = 383

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 155/395 (39%), Gaps = 43/395 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           + SN    L+IDLT + +N   +  L  +  +  A+VK N YG G  + +  +   G+  
Sbjct: 5   LKSNTPSWLEIDLTRISHNIKEVQKLIPSTSKIMAIVKANGYGHGDVECSRMMEQQGIDF 64

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           F V+SV+EGV+LR    Q+ I VL    P     + + +LI  + S       +      
Sbjct: 65  FGVSSVDEGVRLRENGIQSPILVLGYTPPVHFHYLNEASLIQTLVSKEYAEKLNAYAKEQ 124

Query: 119 GVSHPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-- 173
            V      +V+TG +R+G+S   +      +      K   +S I SH + +D       
Sbjct: 125 NVVVKAHAKVNTGMSRIGISHRIMHIISRISKALVRLKHLNVSGIFSHFSVSDCLDEENC 184

Query: 174 -VNSVQLERFRTLISHYKG--------IEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
              + Q+  F  +++  +         I   L +               RPG+   G   
Sbjct: 185 AFTNHQIALFERVLADLRPEGLTPVQRICRQLWN----FKLSEPALDYVRPGLLWMGVPA 240

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELV---SYGG---QKKLTRDSLIAVAAIGYADG 278
            ++         +      +  K   G+      YG      +    + +A  A+GYADG
Sbjct: 241 MMHWQFARHRSFSPHG---MEGKCFPGKGYSARCYGQLRPSFQAEVCTRVATLAVGYADG 297

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           +P ++S            G    + G  VPI+G I MD  M DIT    +  GD   + G
Sbjct: 298 FPRSVSNQ----------GACVLLHGRRVPIIGNICMDQMMVDITGLDGVSEGDVATLIG 347

Query: 339 PD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D    + +D+++  + T N + L  I  R  + Y
Sbjct: 348 CDGDEVLSVDELSRLAHTINNETLCWISQRVPRIY 382


>gi|223986552|ref|ZP_03636550.1| hypothetical protein HOLDEFILI_03866 [Holdemania filiformis DSM
           12042]
 gi|223961492|gb|EEF66006.1| hypothetical protein HOLDEFILI_03866 [Holdemania filiformis DSM
           12042]
          Length = 371

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 161/364 (44%), Gaps = 22/364 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +++DL  +K N   +   + + +  AV+K N YG G   +A A   AG     V+S++E
Sbjct: 7   WVEVDLDQIKENIRWLRRQT-DRQFIAVIKANGYGAGDGPVARAALEAGAAMLAVSSLDE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR     A + +L  + P Q +++   +L     S+  +    ++   G+     L+
Sbjct: 66  ALSLRYQGITAPVLILGVVDPSQAELLLRYDLAVPAVSLDWVKELVQIPVRGLR--VHLK 123

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG +R+G    + L        +    +  I +H AC+D+P + +   Q  RF  ++ 
Sbjct: 124 VDTGMHRIGTGNLDELQAMLTLLQENGALVEGIFTHFACSDNPDNGMTDDQAARFEHIVR 183

Query: 188 HY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                      ++S   +  P       R G++++G T        ++  V+  +R++ +
Sbjct: 184 ALDTPFRWVHSSNSDAAVHYPKAPGNAVRCGLAMFGVTSYATA---LKPCVSLYSRLVYV 240

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +   AG+ V YG      ++  I    IGYADG+     G             + +I+G 
Sbjct: 241 KALPAGQPVGYGATYTTQKEEWIGTLPIGYADGWIRKHQGR------------QCWIEGE 288

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
               +G+I MD  M  +  +  +  G  +++FGP + L+ VA   GT  Y++L  +  R 
Sbjct: 289 TGDFVGRICMDQAMIRLPHAFPV--GTKVELFGPHLPLEQVARELGTIPYEVLTLLSDRL 346

Query: 366 AKFY 369
           AK Y
Sbjct: 347 AKVY 350


>gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 836

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 162/375 (43%), Gaps = 28/375 (7%)

Query: 11  IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           I+L  +++N + +   L    R   +VK  AYG    +IA  L +  +    V+ V+EG+
Sbjct: 469 INLATIESNLNLIRQKLPSQTRLMVMVKALAYGTEDIQIAKFLASCQIDILGVSYVDEGI 528

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYALQV 128
            L+    +  IF L    P +   I    +   +     +   +K  S         L +
Sbjct: 529 ALKRAGVKQAIFALSAT-PAEITKILRWEIEVGVGDQAFIQALAKEASIQQKEIKVHLHI 587

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRTLIS 187
           DTG +R G   +EAL            +L  +++H ACA+D         Q+ +F   ++
Sbjct: 588 DTGMSRFGCRPEEALPLAQMIQEAPFLKLEGVMTHFACAEDLEQDPFTHQQINKFDAAVA 647

Query: 188 HYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEA 240
             + +  S+     A+SS         + + R G+++YG   +  +  S  ++  ++  +
Sbjct: 648 EIQALGISIPWKHAANSSAATRFHLPQYNMVRIGLAVYGLFSSPIVRDSLKLKLALSLLS 707

Query: 241 RIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           RI+ I     GE +SYG    + +    IAV  IGY DG     SG            G 
Sbjct: 708 RIVGINVCKQGETISYGRNYTVEKPLQRIAVLPIGYFDGLHRHYSG-----------KGW 756

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTN 354
             + G   P++G I MD  M DITD  + +VGD + IFG D     +  +D+A+   +  
Sbjct: 757 VLVHGQKAPMIGNICMDFMMIDITDIPTAQVGDTVLIFGEDEHRNFLSPEDLAMRGESIV 816

Query: 355 YDLLVRIGTRYAKFY 369
           ++L+  IG R  + +
Sbjct: 817 HELVTCIGPRIPRIF 831


>gi|330719007|ref|ZP_08313607.1| alanine racemase [Leuconostoc fallax KCTC 3537]
          Length = 370

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 154/375 (41%), Gaps = 25/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R++I  +A+++N   +   +G  +    VK N YGLG   ++ A    G     V  
Sbjct: 7   RPTRIEISKSAIQHNIEVVKQTAGATKLFLAVKSNGYGLGLVPVSQAAVAGGAYGLAVAL 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E + LR     A I +L      Q +++   N+I  + S+  L   ++ +S       
Sbjct: 67  MDEALALRDARITAPIIILGISPAEQAELMAVQNIITTVVSLDWLKSAAQNLSGEQRLAV 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLERF 182
           ++ VDTG  R+G   ++AL  T +   +   +     + +H + +D         QLER+
Sbjct: 127 SIGVDTGMGRIGFRDRDALAETIDYLQQHQDKFEYTGLFTHFSESDSSEVAYFHKQLERW 186

Query: 183 RTLISHYKGIE-ASLASSSGILLG-PNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
             L       +   +A+S   +         + R G  +YG      ++N    +Q V+T
Sbjct: 187 HALTDGLPAPKFYHVANSGAAMYHADEVPHDVVRVGTVVYGMEPSRGELNDGKDLQPVMT 246

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I  +++  AGE +SY  +   T D  I    IGY DG+   + G +          
Sbjct: 247 LRSEINFMKQLPAGEGISYSHKYTTTDDEWIGTVPIGYGDGWLRKMMGFN---------- 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G  VPI+G++ MD  M  +     +  G  +   G D      L+DVA  +   
Sbjct: 297 --VIVDGQYVPIVGQVAMDQLMIRLPREYPL--GTTVTFIGRDGALENTLEDVATHADLA 352

Query: 354 NYDLLVRIGTRYAKF 368
            ++++     R  + 
Sbjct: 353 PWEIVTGFQERLHRI 367


>gi|294785981|ref|ZP_06751268.1| alanine racemase [Fusobacterium sp. 3_1_27]
 gi|294486318|gb|EFG33681.1| alanine racemase [Fusobacterium sp. 3_1_27]
          Length = 356

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 105/375 (28%), Positives = 168/375 (44%), Gaps = 34/375 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  ++ N     VVK NAYGLG  +IA  L   GV+ F V ++
Sbjct: 2   RTWIEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    + +I +L      +        +   ISS+ QL F   L+   ++    
Sbjct: 62  EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQLQF---LVDKNLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + EA        N  L  L  I SHL+ +D     + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVNEAEKVIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKF 177

Query: 183 RTLISHYK-GIE-ASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           + +++     +E   +++S+GI     +    L R GI +Y  T      + ++ + T +
Sbjct: 178 KKIVNSLNLNLEYIHISNSAGITNFHNDILGNLVRLGIGMYSFTGNKKTPY-LKNIFTIK 236

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +R++ I+K      VSYG    L  DS  AV  IGYADG    LS            G  
Sbjct: 237 SRVLFIKKVNKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGSY 285

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN--- 354
             I  +   I+G I MDMTM  I   +   I++G+ + +   DI LD++           
Sbjct: 286 VLINNHRCEIIGNICMDMTMIRIPKEIENSIKIGNEVTVINADI-LDNLN-----IPELC 339

Query: 355 -YDLLVRIGTRYAKF 368
            ++ +  IG R  + 
Sbjct: 340 VWEFMTGIGKRVKRI 354


>gi|332704045|ref|ZP_08424133.1| Alanine racemase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554194|gb|EGJ51238.1| Alanine racemase [Desulfovibrio africanus str. Walvis Bay]
          Length = 379

 Score =  317 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 174/386 (45%), Gaps = 39/386 (10%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L +++DL  + +N+  M + +  AR   V+K +AYG G   +A AL  AG   F V SV
Sbjct: 7   MLEVQVDLKRIVDNYRFMRSRA--ARLMPVIKADAYGHGLLPVAKALAAAGADAFCVGSV 64

Query: 66  EEGVKLRLYTPQAR------IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
            E V LR    +        + +L  +            +  ++    QL        S 
Sbjct: 65  GEAVTLRRE--RKPDSGCRVVSLLGPMDREDYAEAVSHEVTLLVGRHEQLELLQVAASSA 122

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSV 177
           G   P AL+ DTG +RLG S  +              +L L+ SHLA AD+ S       
Sbjct: 123 GRMAPVALKFDTGMSRLGFSEADVPRLIQTLTTSPNLRLELVTSHLATADEDSGVDYVLA 182

Query: 178 QLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230
           Q ERFR + +         +A+LA+S+GIL  P  HF L RPGI+LYG    +  +H   
Sbjct: 183 QAERFRAITAKLSAAGLRFQANLANSAGILAYPELHFDLQRPGIALYGSNPFLGTNHEEL 242

Query: 231 --PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             P++  ++   RI+ +     G  +SYG      RD  +A+ A GYADGY   LS    
Sbjct: 243 GRPLKQAMSVTTRILDVHDLPRGGTISYGRTYTAPRDMRVAIMAAGYADGYSRGLSN--- 299

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                    G+  +KG   PILG++ M +T  DIT    +  GD + + G      I ++
Sbjct: 300 --------KGQVCLKGSRAPILGRVCMQLTAVDITGREDVHPGDTVHLLGGSGRGYISVE 351

Query: 345 DVALASGTTNYDLLVRIG-TRYAKFY 369
           ++A   GT +Y+    +G  R  + Y
Sbjct: 352 ELAGWWGTISYESFCILGLNR--RVY 375


>gi|326381872|ref|ZP_08203565.1| alanine racemase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199298|gb|EGD56479.1| alanine racemase [Gordonia neofelifaecis NRRL B-59395]
          Length = 386

 Score =  317 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 101/389 (25%), Positives = 159/389 (40%), Gaps = 31/389 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M S+  L   +DL A+ +N   +   SG A   AVVK + Y  G   +      AG    
Sbjct: 1   MDSHANLYATVDLGAIAHNVGVLRDRSG-ADVIAVVKADGYAHGAVPVGRTALRAGAIAL 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-YSKLMSCG 119
            V  + E   LR       +                  +   +SS  QL          G
Sbjct: 60  GVAQIREARALRAAGLDGHLIAWLHTTDADFAGAITDGIDIAVSSPRQLAAVVQAARGLG 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            +   ++++DTG  R G++  E     +    +  +    L   + HLA  D P   +NS
Sbjct: 120 RTATVSVKLDTGLARSGVAPDEWDATAEAIAAASAEGAISLHGAMCHLAFGDVPEHPLNS 179

Query: 177 VQLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSH 230
           +Q ER    ++    +G+      +A+S   L  P+      RPG+S+YG +        
Sbjct: 180 LQGERLDEAVADLTRRGVTPELVHIANSPAALTRPDLARDAVRPGLSVYGYSPVPEIGDF 239

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            +   +T E RI LI++  AG+ VSY       R++ + V   GYADG P  LSG    H
Sbjct: 240 GLIPAMTLETRISLIKRIPAGQGVSYNHTWVAPRNTFLGVVPAGYADGVPRGLSGRLGVH 299

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPD--------I 341
                      + G + P +G+I MD  + D+  D   +  GD   +FGP          
Sbjct: 300 -----------VNGRVFPSVGRICMDQLVIDLGPDGGGVAEGDRAILFGPACASAGEPVP 348

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370
              D A A+GT +Y+++ R+G+R  + Y 
Sbjct: 349 TATDWADATGTIDYEIISRVGSRAVRRYV 377


>gi|172040070|ref|YP_001799784.1| hypothetical protein cur_0390 [Corynebacterium urealyticum DSM
           7109]
 gi|171851374|emb|CAQ04350.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 488

 Score =  317 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/406 (25%), Positives = 163/406 (40%), Gaps = 53/406 (13%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           E ++L +DL AL NN          A+  AVVK + Y  G  +IA    + G     V +
Sbjct: 81  ELIQLVVDLGALANNTRFFADFVAPAQLMAVVKADGYNHGALRIAQTALDHGAAVVGVAT 140

Query: 65  VEEGVKLRLYTPQ-----ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY---SKLM 116
           V E + LR   P      A IF             FD  L   + S+         ++  
Sbjct: 141 VPEALLLRERGPVKDGEPATIFAWMWEPAMDLTPAFDAELTLGVPSLAHARSLIDQARSR 200

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDP-SS 172
                    +  DTG +R G+S  E    +     +  + L  +  + +HLA AD+    
Sbjct: 201 QAKPRPVVGVMSDTGMSRSGISPAEWQETIALLAAAEQEGLIAVDGVFTHLASADEDAQR 260

Query: 173 HVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
            V   Q +RF+  I+  +          +A++   L  P+ H +L RPG+ +YG      
Sbjct: 261 AVTDRQHQRFQQAIADCRAAGMAVPRNHIANTPATLTRPDMHHELVRPGLGVYGVDPVAG 320

Query: 228 KSH---------------PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAA 272
            +                P+Q  ++  A++I  R    GE VSYGG      D+  AV A
Sbjct: 321 GTPTGAAENAVPGLPDVLPLQRTMSMRAKVITTRVVPKGESVSYGGIWTAPEDTRTAVVA 380

Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS----- 327
            GYADG P + SG             +  I G     +G+I MD  +  +  + S     
Sbjct: 381 AGYADGVPRSASGKM-----------QVSINGESYQQVGRICMDQFVVALGPAESAAAEA 429

Query: 328 IEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRI-GTRYAKF 368
           ++ GD+  IFG     +  ++D+A A+GT  Y+++    G R  + 
Sbjct: 430 VQPGDWAVIFGDPAAGEPSVEDLAAAAGTIPYEVVTMPRGPRVQRV 475


>gi|212716821|ref|ZP_03324949.1| hypothetical protein BIFCAT_01760 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660106|gb|EEB20681.1| hypothetical protein BIFCAT_01760 [Bifidobacterium catenulatum DSM
           16992]
          Length = 524

 Score =  317 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/408 (25%), Positives = 165/408 (40%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +D+ AL+NN   + ++ G          VVK +AYG G    A A    G 
Sbjct: 96  QKQYPAQAIVDMAALRNNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGA 155

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FY 112
                    E + LR       R  +L  ++ G       + D ++   + S+P +    
Sbjct: 156 TWLGTAQSHEALLLRKAGIGPDRCHILTWVYNGMAVPFDELIDNDIDISVGSLPGIDGVA 215

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G +    ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 216 AAARRLGKTARVHVKVDSGFGRNGFTPATFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 275

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 276 PDVPEFVASTDRQVENFKDFTRRMEVAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLY 335

Query: 221 GGTDKINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P        +T +A++  ++   AG  +SYG       D+  A+  +GYA
Sbjct: 336 GYEADPAMGTPGTYDLTPAMTLQAQLGTVKDVEAGHGISYGRTYLTPTDTSTAIVPVGYA 395

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITDSLS---I 328
           DG   + SG D E +  V   GG   +       +  + G++ MD  M D+  S     +
Sbjct: 396 DGIHRSASGFDMEGAKHVIKPGGPVRVMTTEGPRLYRVSGRVCMDQFMLDLHGSAEKLGV 455

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +Q+FGP       +   DD   A+GT +Y++   +  R  + Y
Sbjct: 456 HEGDTVQLFGPGRGEDYAEPTADDWGRAAGTISYEIFTCLCNRIPRLY 503


>gi|94269682|ref|ZP_01291535.1| Alanine racemase region [delta proteobacterium MLMS-1]
 gi|93451122|gb|EAT02055.1| Alanine racemase region [delta proteobacterium MLMS-1]
          Length = 378

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 107/379 (28%), Positives = 160/379 (42%), Gaps = 28/379 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             ID  AL++N+  +  L S +    AVVK +AYG G    A A   AG   F V +VEE
Sbjct: 8   AVIDRGALRHNYRLLRRLLSPDVGIMAVVKADAYGHGLVPSATAFAVAGAACFGVATVEE 67

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126
           GV LR    +  I VL G+ P         NL PV+         S + ++        L
Sbjct: 68  GVALRQAGIEGEIVVLLGLGPEGVVEAVSRNLSPVVFDSAIPAALSRQAVAGNREVGVHL 127

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-SVQLERFRTL 185
           +VD G  RLGL+   AL            +L+ ++SH   AD   +      Q  +   +
Sbjct: 128 KVDLGMGRLGLAPAAALQLAAEIHRLPGLRLAGLLSHFPLADQREAAAACRRQWRQLAAI 187

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTV 235
                 +        LA+S+G+L        L RPG+SLYG +             ++  
Sbjct: 188 GEEVAALGGGRPRLHLANSAGLLRFAEARGDLVRPGLSLYGYSPLDFPVAGMDWAELRPA 247

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  ++RI+ I++  AG  +SYG +   T  + +AV  +GYADGYP  +SG          
Sbjct: 248 MALKSRIMQIKELPAGSGISYGHRFVTTGPTRLAVIPLGYADGYPRGVSGRAL------- 300

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 I G  VP+ G I M+  + +I    +  VGD +   G      I   ++A    
Sbjct: 301 ----VLIGGKRVPLRGTICMNACLAEIDAVPAARVGDEVVFMGRQGEEVIDAAEIAGWHQ 356

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L R G    + Y 
Sbjct: 357 TIPYEILCRFGAANKREYV 375


>gi|225350823|ref|ZP_03741846.1| hypothetical protein BIFPSEUDO_02397 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158279|gb|EEG71521.1| hypothetical protein BIFPSEUDO_02397 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 527

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 102/408 (25%), Positives = 164/408 (40%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +D+ AL+NN   + ++ G          VVK +AYG G    A A    G 
Sbjct: 99  QKQYPAQAIVDMAALRNNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGA 158

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FY 112
                    E + LR       R  +L  ++ G       + D ++   + S+P +    
Sbjct: 159 TWLGTAQSHEALLLRKAGIGPDRCHILTWVYNGMAVPFDELIDNDIDISVGSLPGIDGVA 218

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G +    ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 219 AAARRLGKTARVHVKVDSGFGRNGFTPATFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 278

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+E F+      +  GI      LA+++  L     HF+LTRPGI LY
Sbjct: 279 PDVPEFVASTDRQIENFKDFTRRMEQAGIAPEIRHLANTAATLSRSEIHFELTRPGIGLY 338

Query: 221 GGTDKINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P        +T +A++  ++   AG  +SYG       D+  A+  +GYA
Sbjct: 339 GYEADPAMGTPGTYGLTPAMTLQAQLGTVKDVEAGHGISYGRTYLTPSDTSTAIVPVGYA 398

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITDSLS---I 328
           DG   + SG D E +  V   GG   +       +  + G++ MD  M D+  S     +
Sbjct: 399 DGIHRSASGFDMEGAKHVVKPGGPVRVMTTEGPRLYRVSGRVCMDQFMLDLHGSAEKLGV 458

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +Q+FGP       +   DD   A+GT +Y++   +  R  + Y
Sbjct: 459 HEGDTVQLFGPGRGEDYAEPTADDWGRAAGTISYEIFTCLCNRIPRLY 506


>gi|213612760|ref|ZP_03370586.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 322

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 92/340 (27%), Positives = 145/340 (42%), Gaps = 28/340 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T  + II ++   AGE V YGG   +T++  I + A GYADGYP                
Sbjct: 234 TLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PT 282

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           G    + G     +G ++MDM   D+T      +G  +++
Sbjct: 283 GTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVEL 322


>gi|269218932|ref|ZP_06162786.1| alanine racemase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212043|gb|EEZ78383.1| alanine racemase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 382

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 101/380 (26%), Positives = 158/380 (41%), Gaps = 30/380 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
               +IDL+A+++N  S+   +G A   AVVK +AYG G  ++A AL  A         +
Sbjct: 15  PAEARIDLSAIRSNLSSVREAAGEAAVLAVVKADAYGHGRAEVARALAPA-ADYLGAAQL 73

Query: 66  EEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHP 123
            E + LR    P  RI                 ++     +   +   +      G +  
Sbjct: 74  GEALALREEVGPGPRILTWIFAPGAPLAQALRADVELSAGAFWAIDEIARAARETGTTAK 133

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLE 180
             L+VDTG  R G +L +  + +      +   L  +  + SHLA AD+P S     Q+E
Sbjct: 134 VHLKVDTGMARGGFNLADVAEASRRLRALQADGLFSVVGLWSHLARADEPESGATERQIE 193

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHP 231
           RF    +  +  GIE     LA+S G L  P   + + RPGI LYG +        +   
Sbjct: 194 RFEQARAAARSEGIEPEILHLAASGGALWHPAARYDMVRPGIVLYGLSPNPEVATARELG 253

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +   +   A +IL R   A   +SYG  +K    + + V  +GY DG P   SG+     
Sbjct: 254 LTPAMELSASLILERGVPAQTPISYGHTEKTEAPTRLGVVPLGYGDGIPRAASGVGPVSV 313

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALA 349
             V              I G++ MD  + D+ ++     GD   +FG       D+ A A
Sbjct: 314 GGV-----------RTRIRGRVCMDQFVVDVPEA--ATAGDTAFLFGAGDLPSADEWAQA 360

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
            GT  Y+++ R+G R  + Y
Sbjct: 361 CGTIGYEIVTRLGARVPRRY 380


>gi|293190212|ref|ZP_06608708.1| alanine racemase [Actinomyces odontolyticus F0309]
 gi|292821028|gb|EFF79981.1| alanine racemase [Actinomyces odontolyticus F0309]
          Length = 422

 Score =  316 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/399 (22%), Positives = 145/399 (36%), Gaps = 47/399 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   + A +  A   A VK NAYG G   +A A  + G     V  + E   
Sbjct: 19  VDLAAIRHNLGVLRAAAPGALQLATVKANAYGHGLLPVARAALDGGADWLGVAQLAEAFT 78

Query: 71  LR----LYTP---QARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
           LR            A I               + ++   +S         +     G   
Sbjct: 79  LRRGLDEAGVARADAPILAWISTSSSDFAAAIEADIDLSVSWTWVLADICAAAREAGRPA 138

Query: 123 PYALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPS---SHVNS 176
              +++DTG +R G +L +          + +  L  +    SH++ ADDPS   +   +
Sbjct: 139 RVHVKIDTGMSRAGSTLADLPALASALRMAADDGLVDVVGAWSHMSRADDPSEAGNASTA 198

Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
             +  F   ++             L+++SGIL     H+ + R GI LYG +     +  
Sbjct: 199 SHVRIFEEGLAILADAGVTPRIRHLSATSGILWHREAHYDMVRAGIGLYGLSPDPEVATS 258

Query: 232 MQ----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            Q      +   A +  ++    G   SYGG         I +  +GY DG     S   
Sbjct: 259 EQLGLTPALELRAPLTSVKVIEEGTPASYGGTWVAPTRRWIGLVPLGYGDGILRAASNQ- 317

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-------------LSIEVGDYI 334
              +  V     G       P++G++ MD  M D+  +                  GD  
Sbjct: 318 ---ARVVVHTASGPFN---APLIGRVCMDQFMVDLGPAEGSPGTPTARSGQAPAIPGDIA 371

Query: 335 QIFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
            +FG  I      DD A A+GT NY+++  +G    + Y
Sbjct: 372 TLFGSGISGEALADDWAQAAGTINYEIVTHLGAHIPRIY 410


>gi|299144129|ref|ZP_07037209.1| alanine racemase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518614|gb|EFI42353.1| alanine racemase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 387

 Score =  316 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 154/387 (39%), Gaps = 33/387 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+      L+I+L  L  N + +   +  +A   +VVK NAYG G  KI   L   G+  
Sbjct: 1   MNLTRPAWLEINLDYLIENINKIRNNVREDAEIISVVKSNAYGFGALKIVEILRENGINF 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
           F V ++ E + +R      ++ +L         +  + N+   I +       +++    
Sbjct: 61  FAVATMSEAIAIRKKFKDVKLLILGYTPDYLMNVAVENNITLAIYNYESARTLNEIAKSQ 120

Query: 119 GVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
             +    + +DTG NR+G   + ++++        K   +  + SH A A D ++     
Sbjct: 121 NKTATIHIALDTGMNRIGFKNIDDSIEDIKKISKFKNIYIEGVFSHFAAA-DTNAEYTKR 179

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q   F+ +    +  +       + +SS IL    Y     RPGI  YG T+ I   +  
Sbjct: 180 QFNIFKNVTDILEKNKINIPIKHINNSSAILNYNEYSLDAVRPGIIQYGSTEGIKTKYKE 239

Query: 233 ----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
               + +   +A++  ++    GE VSYG   + + ++ IA   +GY+DG    LSG   
Sbjct: 240 LNNVKYIGQIKAQVSNVKIVSKGEKVSYGLTYETSTETKIATIPLGYSDGILRQLSGKID 299

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        + G     +G+I MD  M D++      +GD + I G      I + 
Sbjct: 300 -----------VLVSGKRCRQIGRICMDQMMVDVSGV-DCNIGDEVVILGSQGNEYIDIL 347

Query: 345 DVALASGTT--NYDLLVRIGTRYAKFY 369
           ++A        +Y        R  K Y
Sbjct: 348 EIARKVDEIATSYS--CHFSPRLPKVY 372


>gi|169835830|ref|ZP_02869018.1| hypothetical protein cdivTM_01741 [candidate division TM7
           single-cell isolate TM7a]
          Length = 342

 Score =  316 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 147/350 (42%), Gaps = 21/350 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             +I++  L +N   +  +    +  AV+K +AYG G  KI  AL   G+++F V + +E
Sbjct: 4   WAEININNLYSNIDEIEKIVPKEKIIAVIKADAYGHGMLKICDALIKKGIKNFAVATSDE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
            +K++       + +L  +      +I D  +  +++   ++ F  K     G +    +
Sbjct: 64  ALKIKELHNDIMVLILGPVENEYMDLIADKKIYFMVTDFEEIEFLEKTGKENGKTVDVFI 123

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTG  R+G    E         N K      I SH + + D +     +Q  +F+ + 
Sbjct: 124 KIDTGMGRVGFQESEVEQLNKILKNVKHINPIGIFSHFSSS-DSNKEYTKLQERKFKAMC 182

Query: 187 SHY-KGIE----ASLASSSGILLGPNYHFQLTRPGISLYGG-TDKINKSHPMQTVVTAEA 240
                GI       L +S G L          R GI +YGG TDK    +  + V++  A
Sbjct: 183 EKISSGIPSIRYRHLHNSFGTLKFQESVQDFVRAGIIIYGGVTDKETAPYKFKPVMSLFA 242

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I  I+       +SYG           A  +IGYADG    LS             G  
Sbjct: 243 KISYIKTLKEDSFISYGNTYLGKAGETYATVSIGYADGVRRDLSN-----------KGYV 291

Query: 301 FIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVAL 348
           F KG+   I G++ MD  M  + D L    + GD ++ FG +I + +VA 
Sbjct: 292 FYKGHKCKIAGRVCMDQLMILLPDELKDEAKKGDVVEFFGENISVVEVAE 341


>gi|328954808|ref|YP_004372141.1| alanine racemase [Coriobacterium glomerans PW2]
 gi|328455132|gb|AEB06326.1| alanine racemase [Coriobacterium glomerans PW2]
          Length = 383

 Score =  316 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 157/386 (40%), Gaps = 30/386 (7%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +  +  ++ID  A+  N  +    L    R   V+K +AYG G  + +  + +AG   F 
Sbjct: 8   ATRWAWVEIDRGAMLRNTRAFKKMLKPRQRLCCVLKADAYGHGAVESSKIMRSAGADMFA 67

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
           V +V EG++LR     A + VL          + + +L+P + +      + +  +    
Sbjct: 68  VATVAEGIELRRGGCSAPVLVLGEPPCDAIPELLENDLMPAVYTSEFALAFGECAVQVDK 127

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              Y L ++TG NR+G+   + + F       +  Q   + +H A ADDP      +Q  
Sbjct: 128 VGKYHLAIETGMNRIGVHYTKVVSFRRGIEFHRGIQCDGVFTHFATADDPCGWDYKLQCT 187

Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ-- 233
           RF   +   +            ++   +L P  H  + R GI LYG          ++  
Sbjct: 188 RFDEAVQAMRDAGFECGIVHCDNTPASILDPESHHDMIRVGIGLYGLQPADATRERIRLD 247

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSP 292
            V++  AR++ +     GE V YG   ++ R ++ I    IGYADG   TLS        
Sbjct: 248 PVMSVRARVMRVAYPSMGEGVGYGFTYRVPRATVQICTLPIGYADGLARTLSNRMD---- 303

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDI-----TDSLSIEVGDYIQIFGPD----IKL 343
                     +G  +  +G I MD TM  I           E GD + I G D    + +
Sbjct: 304 -------VLYRGGRIRQVGNICMDQTMVAIQQTPAEPIPEAEYGDLMTIVGRDGDAEVSM 356

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369
           D++A    T NY++    G R  K Y
Sbjct: 357 DEMARLRNTINYEVACDFGMRLEKIY 382


>gi|329119158|ref|ZP_08247848.1| alanine racemase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464717|gb|EGF11012.1| alanine racemase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 351

 Score =  316 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 152/366 (41%), Gaps = 19/366 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             L  +I L  L+ N+ ++  + G  +  AV+K +AYG G  + A AL +     F V  
Sbjct: 2   RPLCAEIRLDRLRENYQTLKQIHGG-KMLAVLKADAYGHGALRCAHALADI-ADGFAVAF 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE  +LR       I +L G+    E   +   NL PV+ +  QL              
Sbjct: 60  LEEAAELRRGGIANPIVLLEGVFEAAEYAEVERLNLWPVVGNQWQLESLLAH-EWQKPVQ 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++D+G +R G    E                 +  SH ACAD+    +  +Q E F 
Sbjct: 119 VWLKMDSGMHRTGFFPHEYAPAYTALAQSGKVAAIVKTSHYACADEEERGMTEMQTEAFD 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
              +H  G E+    S+  L  P       R G++LYG    +      + V+     I 
Sbjct: 179 LACAHLAGEESLAN-SAAALAYPQARRDWGRAGLALYGIDPFLGHDPRFKPVMRLVTEIF 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             +     E + YG      R + + +AA GYADGYP   +            G    + 
Sbjct: 238 GEKVLQPHEPIGYGASFYTKRSTRVGLAAGGYADGYPRRAA-----------TGTPVAVA 286

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ILG+++MDM   ++ D     +G  ++++G  + +++VA A+GT  Y+LL  +  
Sbjct: 287 GRRSRILGRVSMDMLTLELADHEG--IGSEVELWGDTVDINEVAAAAGTIAYELLCNV-K 343

Query: 364 RYAKFY 369
           R    Y
Sbjct: 344 RAKFVY 349


>gi|261338093|ref|ZP_05965977.1| alanine racemase [Bifidobacterium gallicum DSM 20093]
 gi|270276712|gb|EFA22566.1| alanine racemase [Bifidobacterium gallicum DSM 20093]
          Length = 466

 Score =  316 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 163/417 (39%), Gaps = 55/417 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGN-------ARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
             +  +DL AL++N   +  +               VVK +AYG G    A A    G  
Sbjct: 31  PAQAIVDLAALRDNMRHLVEIVNADPAKPHRTEVMGVVKADAYGHGLVPAALAALAGGAT 90

Query: 59  DFFVTSVEEGVKLRLYTP---QARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFY 112
                   E ++LR       +ARI  L  ++   E     +   ++   + +   +   
Sbjct: 91  WLGTAQAHEALELRRAGIGPERARI--LTWVNDPYEVPYDELLRQHIDVSVGTPDAVEQL 148

Query: 113 SKLMSCGVS---------HPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLI 160
           +K                    ++VDTGF R G +L +            +  L +++  
Sbjct: 149 AKAAEAVQRFVRGADPIVAHVHVKVDTGFGRNGFTLNQLDLIAPRLKQLQDAGLFEITGQ 208

Query: 161 ISHLACADDPSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQ 211
            SHLA AD P           Q+ RF     H +  GIE     LA+++  L  P  H+ 
Sbjct: 209 WSHLAVADAPDVPEFVHETDEQVARFEEFTRHMQEAGIEPRIRHLANTAATLSRPEIHYD 268

Query: 212 LTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSL 267
           L RPG++LYG         P        +T +A++  ++    G  +SYG        + 
Sbjct: 269 LVRPGVALYGYEPDPAMGTPQDYGLTPAMTLQAQLSSVKHVPQGTGLSYGRVYVTDAPTS 328

Query: 268 IAVAAIGYADGYPLTLSGLDSEHSP-SVFLGGKGFI---KGYMVP-ILGKITMDMTMFDI 322
           +A+  +GYADG   + SG D   S      GG        G  V  + G++ MD  + D+
Sbjct: 329 VAIVPVGYADGIHRSASGFDRCGSRHEDRKGGPVAFMTRDGVQVRHVSGRVCMDQFIVDL 388

Query: 323 TDS---LSIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
                 L I++GD +Q+FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 389 HGDAKELGIDIGDTVQLFGPGRGEAYGEPTADDWAKAADTISYEIFTCLRNRVPRLY 445


>gi|326774015|ref|ZP_08233297.1| alanine racemase [Actinomyces viscosus C505]
 gi|326636154|gb|EGE37058.1| alanine racemase [Actinomyces viscosus C505]
          Length = 447

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 98/416 (23%), Positives = 168/416 (40%), Gaps = 65/416 (15%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  +DL A+ +N   +  ++G     AVVK +AYG G   +A    +AG     V  + E
Sbjct: 33  RAVVDLAAVAHNGRRLAQVAG-VPWMAVVKADAYGHGLGPVALTALSAGASWLGVAQLAE 91

Query: 68  GVKLR----LYTPQARIF--------VLYGIHPGQEK-----------IIFDTNLIPVIS 104
            + LR           +         +L  + P  E                 +L   +S
Sbjct: 92  ALTLRALLDEAGVSRPVGEPTSQAPRLLTWLLPVMEPDRAAAEDSPLRAALAADLDLSVS 151

Query: 105 SVPQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLI 160
           ++PQL   S    + G +    L+VDTG +R G +++E            ++    +  +
Sbjct: 152 TLPQLEALSAAARAQGRAARLHLKVDTGMSRGGATVEELPALAAALRRAEDEGTVDVVGL 211

Query: 161 ISHLACADDPSSHVNSVQLERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRP 215
            SHL+ AD+P+S      LER+R      L +        LA++ G+L  P     L R 
Sbjct: 212 WSHLSRADEPASGSTEEHLERYRQAEQVVLAAGLNPPTHHLAATGGLLWHPQARMDLVRA 271

Query: 216 GISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
           GI +YG +            ++  +  E+ ++ +++  AG+ VSYGG      D  + + 
Sbjct: 272 GIGMYGLSPDPSVATGAELGLRPAMRLESPLVQVKRIEAGQAVSYGGTWSAPTDRWVGLV 331

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---- 327
            +GY+DG P   S             G   +   M  ++G++ MD  + D+  ++     
Sbjct: 332 PLGYSDGIPRAAS-----------SAGPVGVGSLMTSVVGRVCMDQVVIDLGPAVDETGA 380

Query: 328 -----IEVGDYIQIFGPD--------IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
                  VGD   ++G             D+ A A GT NY+++ R+G R  + Y 
Sbjct: 381 PLPAAARVGDTAVLWGAPAVSDQEAVPTADEWAQACGTINYEIVTRLGARVPRCYV 436


>gi|298345414|ref|YP_003718101.1| alanine racemase [Mobiluncus curtisii ATCC 43063]
 gi|298235475|gb|ADI66607.1| alanine racemase [Mobiluncus curtisii ATCC 43063]
          Length = 442

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 98/441 (22%), Positives = 167/441 (37%), Gaps = 84/441 (19%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S   +R  ++L+A + N   M   + +++  A+VK NAYG G E++A A   AG +   V
Sbjct: 7   SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66

Query: 63  TSVEEGVKLRLYTPQ----------------------------------ARIFVLYGIHP 88
               E  +LR Y  +                                   RI     +  
Sbjct: 67  AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYVPH 126

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEAL---D 144
                +  + +   +S++ QL   S+   + G      L+VDTG  R G + ++      
Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSRACDAAGKRARLHLKVDTGLCRAGATDEDFPVLCK 186

Query: 145 FTHNSFNKKLGQLSLIISHLA---CADDPSSHVNSVQLERFRTL--ISHYKGIEA---SL 196
                    L ++S + SHLA        +      QL+ F     ++   G+      +
Sbjct: 187 LARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLRHI 246

Query: 197 ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALAGE 252
           A+++GI+  P  H+ L R GIS YG +     +   Q     V+  E  ++ +++   G 
Sbjct: 247 AATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVMRLETNVVQVKRVEKGA 306

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            VSYGG+        + +  +GYADG                   G+ +IKG   PI+G+
Sbjct: 307 AVSYGGEWVAPGPRWLGLLPVGYADGLHRLAKNR-----------GETWIKGRRAPIVGR 355

Query: 313 ITMDMTMFDITDSLS---------IEVGDYIQIFGPD--------------IKLDDVALA 349
           I MD  + D+  ++          +E G+   IFG                   DD A  
Sbjct: 356 IPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDRLLGGIPGVPALPTADDWAEW 415

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           + T NY+++  I     + Y 
Sbjct: 416 TDTINYEVITSISPNVPRVYV 436


>gi|315605945|ref|ZP_07880976.1| D-alanine racemase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312227|gb|EFU60313.1| D-alanine racemase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 426

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 90/402 (22%), Positives = 144/402 (35%), Gaps = 47/402 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             IDL A+ +N   + A +  A   A VK NAYG G   +A A   AG     V  + E 
Sbjct: 17  ASIDLAAIGHNLKVLRAAAPGALQLATVKANAYGHGLIPVARAALEAGADWLGVAQLAEA 76

Query: 69  VKLRL----YTP---QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120
             LR            + I                 ++   +S    L    +     G 
Sbjct: 77  FALREGLDAAGVAREDSPILAWISTSSSDFAAAIAADIDLSVSWTWVLAHICAAARQVGR 136

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNK---KLGQLSLIISHLACADDPSS---HV 174
                +++DTG +R G +L +               L  +    SH++ ADDPS      
Sbjct: 137 PARVHVKIDTGMSRAGSTLADLPTLAAALKAASDDGLIDVVGAWSHMSRADDPSDGGNAS 196

Query: 175 NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI--- 226
            +  +  F   +   +  G+      LA++SGIL  P  H+ + R GI LYG +      
Sbjct: 197 TASHVRIFEEGLRILREAGVRPRIRHLAATSGILWHPQTHYDMVRVGIGLYGLSPDPAVA 256

Query: 227 -NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 +   +T  A +  ++    G  VSYGG         I +  +GY DG     S 
Sbjct: 257 SAADLGLIPALTLCAPLTSVKVIEEGSPVSYGGTWAAPTRRWIGLVPLGYGDGILRAASN 316

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-------------LSIEVGD 332
                  +              P++G++ MD  M D+  +                 VGD
Sbjct: 317 RARVLVHTAS-------GPLSAPVVGRVCMDQFMIDLGKAAGDAGEATAHAGQPPARVGD 369

Query: 333 YIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            + + G     +   D+ A A+ T NY+++ R+G    + Y 
Sbjct: 370 EVILLGNGAGGEPLADEWADAADTINYEIVTRLGAHIPRTYV 411


>gi|294782996|ref|ZP_06748320.1| alanine racemase [Fusobacterium sp. 1_1_41FAA]
 gi|294479874|gb|EFG27651.1| alanine racemase [Fusobacterium sp. 1_1_41FAA]
          Length = 354

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 102/373 (27%), Positives = 163/373 (43%), Gaps = 32/373 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  L+ N     VVK NAYGLG  +IA  L   GV  F + ++
Sbjct: 2   RTWVEIDKENLKYNILKLKELADNREVLGVVKANAYGLGSVEIAKILQEVGVNFFGLANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    +A   +L      +       ++   ISS+ QL F   L+   ++    
Sbjct: 62  EEVIELQEAGIKANFLILGASFEDELIEATKRDIHVAISSMQQLKF---LVENNLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + EA +   N        L  I +HL+ +D     + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVYEAEEVI-NFCKTHNLNLVGIFTHLSDSDGNTIDTKNFTLEQIEKF 177

Query: 183 RTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + ++         +++S+GI     N    L R GI++Y  T        ++ V T +++
Sbjct: 178 KNIVKGLDLKYIHISNSAGITNFHENILGNLVRAGIAMYSFTGNKKTPC-LKNVFTIKSK 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +K      VSYG    L  DS  AV  IGYADG    L+            GG   
Sbjct: 237 VLFTKKVNKDSFVSYGRHYTLPADSTYAVIPIGYADGLKKYLT-----------KGGYVL 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355
           I  +   I+G I MDMTM  I   L   I++ D + +   DI +D++            +
Sbjct: 286 INNHRCEIIGNICMDMTMVRIPKELEKTIKISDEVTVINADI-IDNLN-----IPEFCVW 339

Query: 356 DLLVRIGTRYAKF 368
           + +  IG R  + 
Sbjct: 340 EFMTGIGRRVKRI 352


>gi|119386397|ref|YP_917452.1| alanine racemase [Paracoccus denitrificans PD1222]
 gi|119376992|gb|ABL71756.1| alanine racemase [Paracoccus denitrificans PD1222]
          Length = 365

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 134/362 (37%), Positives = 189/362 (52%), Gaps = 27/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L ID+ A+  NW ++ A +  AR AAVVK +AYGLG +++AP LY AG +DFFV    EG
Sbjct: 29  LVIDIPAIVANWKALAARAPGARAAAVVKADAYGLGADRVAPPLYAAGARDFFVALASEG 88

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R   P  ARIFVL G   G +       L+P+++S  Q      L   G   P+ +Q
Sbjct: 89  RAIRPLLPDDARIFVLSGHMEGADLA----GLVPLLNSPEQFFRDRALRPRG---PFGIQ 141

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D+G NRLG+   E              + +LI+SHLACAD+P    N+ QL  FR +  
Sbjct: 142 LDSGMNRLGIEPGEWA---AIRAEALAARPALIMSHLACADEPDHPANAQQLAAFRAMTE 198

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GILLGP+YHF L RPGI LYGG    +     + VVT    +I +R+
Sbjct: 199 GV-TVPRSLAATGGILLGPDYHFDLVRPGIGLYGGEPFADA----RPVVTLALPVIQVRE 253

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R S +A  A GYADG    L+        +   G         V
Sbjct: 254 VKPGESVGYGYAWTAARPSRVATVAAGYADGLARALARDGKLTLWAGERG---------V 304

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+I+MD+   D+TD   +     ++I      +DD+A  SGT  Y++L  +G RY +
Sbjct: 305 PVIGRISMDLITVDVTDLPDVPA--ALEILNARQGVDDLAALSGTIGYEILTSLGRRYER 362

Query: 368 FY 369
            +
Sbjct: 363 TW 364


>gi|227499508|ref|ZP_03929615.1| possible alanine racemase [Anaerococcus tetradius ATCC 35098]
 gi|227218387|gb|EEI83638.1| possible alanine racemase [Anaerococcus tetradius ATCC 35098]
          Length = 373

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 83/349 (23%), Positives = 142/349 (40%), Gaps = 28/349 (8%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
           ++   AV+K NAYGLG   IA  +    V  F V S  E   LR    +  I +L  + P
Sbjct: 26  DSPICAVIKANAYGLGAVPIANYIEEY-VSYFAVASFNEAKVLRASNIKKPILILGYVSP 84

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
            +  +    N+   I  +      +  +   +     + +DTG  RLG    E  D    
Sbjct: 85  EEAILSSKYNIEIPIYDLAYAKQINDKLDSKLD--VHIALDTGHGRLGFRPFEFEDILK- 141

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----RTLISHYKGIEASLASSSGILL 204
             + +   +    SH + AD+        Q + F    + L   +      +A+S+  + 
Sbjct: 142 LKDLQNLHIKGAFSHFSTADEEDIEFTQRQNKIFNGFKKDLGREFDIENFHIANSAATIF 201

Query: 205 GPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
             N    + R GISLYG          K   +    + ++ +  ++    G  +SYG   
Sbjct: 202 H-NIKGDMQRIGISLYGIYPSEYLLERKDVELSKAFSIKSVVSFVKNIEKGTSLSYGRSF 260

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
              +D  IA  +IGYADG+    S             G+  I G +  + G++ MD  M 
Sbjct: 261 IADKDMKIATISIGYADGFFRAFSN-----------KGEVLINGKIAKVCGRVCMDQIMV 309

Query: 321 DITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D+++   + +GD ++I+ PD+  +  A   GT  Y+L+  +  R  + Y
Sbjct: 310 DVSNI-DVNIGDEVEIY-PDLYKE--ANKIGTIPYELMTALSLRVIRVY 354


>gi|297192661|ref|ZP_06910059.1| alanine racemase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151457|gb|EFH31178.1| alanine racemase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 369

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 92/352 (26%), Positives = 153/352 (43%), Gaps = 29/352 (8%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           VVK +AYG G    A A   AG       +  E + LR    ++R+        G  +  
Sbjct: 16  VVKSDAYGHGMVPCARAALAAGATWLGTATPHEALALRAAGVESRVMCWLWTPGGPWREG 75

Query: 95  FDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
            + +L   +S +  L    +   + G      L+ DTG  R G    +  +    +   +
Sbjct: 76  IEADLDMSLSGMWALEEVTAAAKAAGRPARVQLKADTGLGRNGCQPADWPELVAAARTAE 135

Query: 154 ---LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK--GIEA---SLASSSGILLG 205
              L +++ + SH ACAD+P     + QL  FR ++ H +  GI+     +A+S   L  
Sbjct: 136 DDGLVRVTGLWSHFACADEPGHPSIAAQLAVFRDMVDHAEKAGIDPEVRHMANSPATLTV 195

Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKK 261
           P  HF L R GI++YG +       P     + V+T  A + L++   AG  VSYG    
Sbjct: 196 PESHFDLVRTGIAMYGISPAPELGTPADFGLRPVMTLAASVALVKHVPAGHGVSYGHHYV 255

Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321
              ++ + +  +GYADG P   SG            G   + G    + G++ MD  + D
Sbjct: 256 TDDETTLGLIPVGYADGIPRHASG-----------KGPVLVAGEWRRVAGRVAMDQFVVD 304

Query: 322 ITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  + ++  G    +FGP    +   +D A A+ T  Y+++ RIGTR  + +
Sbjct: 305 LGGT-TVPEGTEAILFGPGDRGEPTAEDWAQAADTIAYEIVTRIGTRVPRVH 355


>gi|226356276|ref|YP_002786016.1| alanine racemase [Deinococcus deserti VCD115]
 gi|259710064|sp|C1CVP5|ALR_DEIDV RecName: Full=Alanine racemase
 gi|226318266|gb|ACO46262.1| putative Alanine racemase [Deinococcus deserti VCD115]
          Length = 355

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 167/372 (44%), Gaps = 27/372 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP-ALYNAGVQD 59
           M S  +    I   AL +N   ++A +G  R    VK NAYG G E IA  A  +  V  
Sbjct: 4   MQSRAY--ALISEAALHHNLSGLSARAG-TRLLLPVKANAYGHGLELIARQAAAHPDVWG 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V +  E   + L      + +L    P +   + D  +   +SS+ +           
Sbjct: 61  LAVATPREAQAVALLNLGRPVVLLTPPTPDEVVPLADLGVRLPVSSLEEAEAL------P 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           V     L+VDTG NRLG    EA+        +  G L    +H A  D+        QL
Sbjct: 115 VHARAHLKVDTGMNRLGARPDEAIRIGQRLAER--GVLEGAYTHFATTDEEDLSFAHEQL 172

Query: 180 ERFRTLISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVT 237
            RFR++I+    + A  A+  GIL LG      L+RPG++ YG     + +  P+  V+T
Sbjct: 173 RRFRSVIAALPPVLAHCANGGGILSLGHLGDMGLSRPGLASYGFAPAHLQRVVPLTPVMT 232

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A +  + KA AGE VSYGG  +  RD+ +A    GYADGYP   +           L 
Sbjct: 233 LRATVTQVHKAFAGESVSYGGLWQAPRDTTLATIGFGYADGYPRNAT-----------LR 281

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYD 356
               ++G   P++G+I MD  M D+T  L +  GD ++ +G  D+ + +VA    T  Y+
Sbjct: 282 AHVLVRGERRPVVGRICMDQCMVDVTG-LEVRAGDQVECWGSGDLTVSEVAGWGDTIEYE 340

Query: 357 LLVRIGTRYAKF 368
           +L  +G R  + 
Sbjct: 341 VLTGLGERVERV 352


>gi|24217378|ref|NP_714861.1| alanine racemase [Leptospira interrogans serovar Lai str. 56601]
 gi|73921669|sp|Q8EX97|ALR_LEPIN RecName: Full=Alanine racemase
 gi|24202458|gb|AAN51876.1|AE011618_3 alanine racemase [Leptospira interrogans serovar Lai str. 56601]
          Length = 389

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/391 (26%), Positives = 167/391 (42%), Gaps = 38/391 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M       ++I   +L NN  +  + L  N+   A++K NAYG G E +      AG+  
Sbjct: 11  MKDTYSSWIEISKRSLSNNLDNFRSILRPNSTLTAILKSNAYGHGIEPMTRLCIEAGISR 70

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             V S+EE + +R    +  I ++  I     ++ ++ D N   V S        S  + 
Sbjct: 71  IGVNSIEEALLIRNIDSKIPILIMGEIQNPEKRKDVLSDPNFWIVFSRPETARILSSFLP 130

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNS 176
                   L++DTG  RLG S  E L  T +        L  I +H A  +D      + 
Sbjct: 131 A---PKLHLKIDTGMGRLG-SHGETLKQTLSELKNVGITLGGICTHFASTEDVLEHKYSL 186

Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----- 226
           +Q ++F   I       Y  +     +S+  +L PN HF + R GISLYG    I     
Sbjct: 187 MQTQKFEEAIFLAKSFGYNHLIRHACASASTMLFPNAHFDMVRIGISLYGLWPSIQTRLS 246

Query: 227 -----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                NK+  +  +++ ++RI+ I+   A   + YG   + +  + +A+  +GY +G   
Sbjct: 247 LNLTGNKNFQLNPILSWKSRIVHIQYHPADSYIGYGSTFQTSYPTKVAIVPVGYYEGLDR 306

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
            LS             G   + G    I+G+I M+MTM D+T     EVG  + I G D 
Sbjct: 307 KLS-----------SNGDMLVLGKKARIIGRICMNMTMLDVTHIPGAEVGSIVTIIGQDG 355

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKF 368
              I  DD+A  + T NY+++ RI     + 
Sbjct: 356 EESITADDLADRTHTINYEVMTRISESIPRI 386


>gi|291287316|ref|YP_003504132.1| alanine racemase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884476|gb|ADD68176.1| alanine racemase [Denitrovibrio acetiphilus DSM 12809]
          Length = 361

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 166/378 (43%), Gaps = 28/378 (7%)

Query: 1   MHSN----EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLG-CEKIAPALYNA 55
           M+S          +IDL A   N  +   LSG     A+VK +AY  G  E    A    
Sbjct: 1   MNSKLKALRPTYAEIDLRAFGKNIETARELSG-TDIIAIVKADAYSHGELEMCGYAYQKH 59

Query: 56  GVQDFFVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
               F V ++ E + LR +      IFVL  I     +  ++ N+I  I+     T Y++
Sbjct: 60  NCTKFAVATILEAIILREHLGEGVSIFVLGYIDETFYEEAYEHNIIFTINDNDTATKYNE 119

Query: 115 -LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
            L    +     ++++TG NRLG      + +   S      +   I+SHL+ A D    
Sbjct: 120 FLQRKNLHANVTVKINTGMNRLGFRTD--MSWYEFSSAYPALRPIHIMSHLSSA-DTDRE 176

Query: 174 VNSVQLERFRTLISHYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
               Q+E F   I+  K     SL +SSGI    N  F LTRPGI LYG  D       +
Sbjct: 177 YTYNQIEEFHNFIAKNKIRCHTSLLNSSGIAGYEN-KFSLTRPGIMLYGYLD-GGYDVKL 234

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V+   +RI+ I+    G+ VSY  +    R+  I V  IGYADGYP  LS        
Sbjct: 235 EKVMRIYSRIVQIQYLRKGDAVSYSRKFHADRNMAIGVVPIGYADGYPRCLSNKS----- 289

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD-YIQIFGPDIKLDDVALASG 351
                   F+ G   P++G + MDM M D+T       G   +++ G  I  D++A  +G
Sbjct: 290 ------HVFVDGIKCPVIGNVCMDMMMVDLTGVN--LNGSLKVEVLGDSIDADELAEMAG 341

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T +Y++L  I  R  + Y
Sbjct: 342 TISYEILTGIQNRIPRIY 359


>gi|171463622|ref|YP_001797735.1| alanine racemase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193160|gb|ACB44121.1| alanine racemase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 381

 Score =  315 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 154/376 (40%), Gaps = 31/376 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV--QDFF 61
           N  +   I   A ++N + +  ++  ++  +V+K  AYG        A     +    F 
Sbjct: 20  NRPILASIHTAAFQHNLNRVREMAPESKIWSVIKARAYGH----CFDAALKGLISTDGFA 75

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLM-SCG 119
           +  +++   LR +  + RI +L G     E     +     V+    Q+ +         
Sbjct: 76  LLDIQDAAWLREHGWKGRILLLEGFFHENELSRAEELACDLVVHCGAQVEWLESFKGKNR 135

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQ 178
                 L+++TG NRLG    +     H       G     ++H A AD  +       Q
Sbjct: 136 KPFNVFLKMNTGMNRLGFKPDDYRTVFHRLHAA--GYHMHHMTHFANADQVNRIPSVGSQ 193

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---- 234
            E F   I   +G   SLA+S+ IL   N      RPGI LYG +     +    +    
Sbjct: 194 QELFNQTIEGLEGA-TSLANSAAILWHRNALGDWVRPGIMLYGVSPTGLHADIEHSNLQV 252

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+   + II I+    G+ + YGG+ +      I + A GYADGYP              
Sbjct: 253 VMQLHSEIIDIQDLQKGDRIGYGGRYEAPEAMRIGIVACGYADGYPRHA----------- 301

Query: 295 FLGGKGFI----KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
             G   ++     G + P++G+++MDM   D+  + +  +G  +Q++G  + +DDVA  S
Sbjct: 302 KDGTPVWVANGDHGVICPLVGRVSMDMLAIDLRHAPNASIGTTVQLWGDKVPVDDVAQMS 361

Query: 351 GTTNYDLLVRIGTRYA 366
            TT Y+LL  +  R  
Sbjct: 362 DTTGYELLCAVAPRVP 377


>gi|300173959|ref|YP_003773125.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811]
 gi|299888338|emb|CBL92306.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811]
          Length = 376

 Score =  315 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 93/380 (24%), Positives = 156/380 (41%), Gaps = 27/380 (7%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                 + ID  A++ N   +   +G  R   VVK N YG G      ALY  GV+DF V
Sbjct: 10  RTRPSWIAIDSEAIQENARIIMQYTGAKRLIGVVKANGYGFGAVATVKALYEIGVRDFAV 69

Query: 63  TSVEEGVKLRLYT--PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            ++ E   LR        +I +L         I+   +L P +  +  L    KL+  G 
Sbjct: 70  ATIAEAAILRQEVTYDDFQILLLGVQDVAFVDIMVAYHLSPAVGDLSWLQQAVKLIPEGK 129

Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                L +DTG  R+G   Q +  +      +    QL    +H A ADD +      Q+
Sbjct: 130 VLEVQLAIDTGMGRMGAHSQSQVKEMYEFIQSSDKLQLMGAFTHFATADDNNQSYYDHQV 189

Query: 180 ERFRTLI--SHYKGIEASLASSSGILLGPN-YHFQLTRPGISLYGGT---DKINKSHPMQ 233
           E F   +  ++       LA+S   L      +    R G  LYG      + +    ++
Sbjct: 190 ENFYKWVHGANIPEKYWHLANSGSALWHKKEINIHTIRVGSVLYGYNPGAPERDMPIKLK 249

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           +V++ ++RI  + +  AGE VSYG      R   +A   IGYADGY   ++G+       
Sbjct: 250 SVLSLKSRIGFVHELQAGESVSYGATYTAERPQWVATLPIGYADGYLRRMTGM------- 302

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G++  ++G++TMD  +  +     +     + + G D    I L++ A  
Sbjct: 303 -----RVLIAGHVEHVIGRVTMDQIVISLDKKYPVN--TEVTLIGQDGDEEITLEEFAEY 355

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           + T  +++     +R  + Y
Sbjct: 356 AKTIPHEISTTFSSRLPRIY 375


>gi|149926132|ref|ZP_01914394.1| alanine racemase [Limnobacter sp. MED105]
 gi|149824950|gb|EDM84162.1| alanine racemase [Limnobacter sp. MED105]
          Length = 365

 Score =  315 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 164/372 (44%), Gaps = 23/372 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +R  +   A+  N + +  L GN     VVK N YG G E+I   L+        +  
Sbjct: 3   RPIRAVVKPAAISANINRIKELLGNVVMMPVVKANGYGHGLERIIDGLWQ--ADALAILE 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +E   +LR       I +L G     + +   +     V+ +  QL   + +     +H 
Sbjct: 61  IEGAARLRCMGWNKPIVLLEGCFDQTDLLKAMELRCDWVVHNQNQLNDLAAIAQWQPAHK 120

Query: 124 --YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ---LSLIISHLACADDPSSHVNSVQ 178
               L+++TG NRLG    +A           L       ++++H A AD+         
Sbjct: 121 PQIFLKLNTGMNRLGFQPAQAQAAIQWLDEFTLKHQWPTPVLMTHFANADEAEPRARLPF 180

Query: 179 LERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQT 234
            +R   ++   K     +SLA+S+G L  P     + RPGI++YG T   N +  + ++ 
Sbjct: 181 AQRQHQILMDLKPDHWRSSLANSAGSLNFPMLAGDIARPGIAIYGATPGPNAAANYGLKA 240

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + II I++   G+ V YG + + +    IAV A GYADGYP              
Sbjct: 241 AMIFSSEIIAIQEVKQGDRVGYGSRWEASDSGRIAVVACGYADGYPRHA----------- 289

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
             G   +++G++ P+ G+++MDM   D++   + +VG  ++++G  I +D VA   GT  
Sbjct: 290 PDGTPTYVEGHVAPVAGRVSMDMMTIDVSHIPNAKVGSTVELWGEHIPVDVVADRCGTIG 349

Query: 355 YDLLVRIGTRYA 366
           Y+LL  I  R  
Sbjct: 350 YELLCAIAPRVP 361


>gi|45655817|ref|YP_003626.1| alanine racemase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|73921668|sp|Q75FF2|ALR_LEPIC RecName: Full=Alanine racemase
 gi|45602788|gb|AAS72263.1| alanine racemase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 389

 Score =  315 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 103/391 (26%), Positives = 168/391 (42%), Gaps = 38/391 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M       ++I   +L NN  +  + L  N+   A++K NAYG G E +      AG+  
Sbjct: 11  MKDTYSSWIEISKRSLSNNLDNFRSILRPNSTLTAILKSNAYGHGIEPMTRLCIEAGISR 70

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK--IIFDTNLIPVISSVPQLTFYSKLMS 117
             V S+EE + +R    +  I ++  I   +++  ++ D N   V S        S  + 
Sbjct: 71  IGVNSIEEALLIRNIDSKIPILIMGEIQNPEKRKNVLSDPNFWIVFSRPETARILSSFLP 130

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNS 176
                   L++DTG  RLG S  E L  T +        L  I +H A  +D      + 
Sbjct: 131 A---PKLHLKIDTGMGRLG-SHGETLKQTLSELKNVGITLGGICTHFASTEDVLEHKYSL 186

Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----- 226
           +Q ++F   I       Y  +     +S+  +L PN HF + R GISLYG    I     
Sbjct: 187 MQTQKFEEAIFLAKSFGYNHLIRHACASASTMLFPNAHFDMVRIGISLYGLWPSIQTRLS 246

Query: 227 -----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                NK+  +  +++ ++RI+ I+   A   + YG   + +  + +A+  +GY +G   
Sbjct: 247 LNLTGNKNFQLNPILSWKSRIVHIQYHPADSYIGYGSTFQTSYPTKVAIVPVGYYEGLDR 306

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
            LS             G   + G    I+G+I M+MTM D+T     EVG  + I G D 
Sbjct: 307 KLS-----------SNGDMLVLGKKARIIGRICMNMTMLDVTHIPGAEVGSIVTIIGQDG 355

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKF 368
              I  DD+A  + T NY+++ RI     + 
Sbjct: 356 EESITADDLADRTHTINYEVMTRISESIPRI 386


>gi|315656254|ref|ZP_07909145.1| D-alanine racemase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315493256|gb|EFU82856.1| D-alanine racemase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 442

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 166/441 (37%), Gaps = 84/441 (19%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S   +R  ++L+A + N   M   + +++  A+VK NAYG G E++A A   AG +   V
Sbjct: 7   SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66

Query: 63  TSVEEGVKLRLYTPQ----------------------------------ARIFVLYGIHP 88
               E  +LR Y  +                                   RI        
Sbjct: 67  AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYAPH 126

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEAL---D 144
                +  + +   +S++ QL   S+   + G      L+VDTG  R G + ++      
Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSRACDAAGKRARLHLKVDTGLCRAGATDEDFPVLCK 186

Query: 145 FTHNSFNKKLGQLSLIISHLA---CADDPSSHVNSVQLERFRTL--ISHYKGIEA---SL 196
                    L ++S + SHLA        +      QL+ F     ++   G+      +
Sbjct: 187 LARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLRHI 246

Query: 197 ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALAGE 252
           A+++GI+  P  H+ L R GIS YG +     +   Q     V+  E  ++ +++   G 
Sbjct: 247 AATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVMRLETNVVQVKRVEKGA 306

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            VSYGG+        + +  +GYADG                   G+ +I+G   PI+G+
Sbjct: 307 AVSYGGEWVAPGPRWLGLLPVGYADGLHRLAKNR-----------GETWIRGRRAPIVGR 355

Query: 313 ITMDMTMFDITDSLS---------IEVGDYIQIFGPD--------------IKLDDVALA 349
           I MD  + D+  ++          +E G+   IFG                   DD A  
Sbjct: 356 IPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDRLLGGIPGVPTLPTADDWAKW 415

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           + T NY+++  I     + Y 
Sbjct: 416 TDTINYEVITSISPNVPRVYV 436


>gi|294054687|ref|YP_003548345.1| alanine racemase [Coraliomargarita akajimensis DSM 45221]
 gi|293614020|gb|ADE54175.1| alanine racemase [Coraliomargarita akajimensis DSM 45221]
          Length = 378

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 154/378 (40%), Gaps = 24/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++    +IDL A + N   + A L  + R  +VVK +AYG G   +   L  +GV  F V
Sbjct: 7   DQRCWAEIDLAAFERNVRRIQAELPSDVRYVSVVKADAYGHGMPHMVRRLMQSGVDCFAV 66

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVS 121
            +V E  ++R       I +L  + P ++  + + +L   IS+     T          +
Sbjct: 67  ANVAEAAEIRHMGSGWPILILSPVLPYEQAKLLEYDLSATISTETEAHTLNELAKRKNST 126

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L++DTG  RLG+  + A     +       +L  I +H + A D       +Q +R
Sbjct: 127 LKVHLKIDTGMGRLGVWYESARALFDSLQAYPHLKLEGIYTHFSSA-DSDPTFTQLQRQR 185

Query: 182 FRTLISHYK--GIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTV 235
               +       +     +S+ +  L     F   R G+   G          S  ++ V
Sbjct: 186 LLDFLEQVPIDDLLIHADNSASLESLSGQSPFNAVRVGLLQLGIPPYPQSLLGSIHVEPV 245

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +   RI LI++   G  +SY     L R + I +   GY DG PLTLS           
Sbjct: 246 FSFHTRIGLIKELPPGTDISYSRTYTLNRTTRIGILTAGYGDGIPLTLSNR--------- 296

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
             G+  I G   PILG++TMD T+ D++ +    VGD   + G      I   + +  + 
Sbjct: 297 --GEVLIHGRRCPILGRVTMDQTIVDLSGATDARVGDIATLIGQHGDETISAAEFSQTAE 354

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  ++ L  I  R  + Y
Sbjct: 355 TIPWETLCSITKRVTRTY 372


>gi|152964696|ref|YP_001360480.1| alanine racemase [Kineococcus radiotolerans SRS30216]
 gi|151359213|gb|ABS02216.1| alanine racemase [Kineococcus radiotolerans SRS30216]
          Length = 415

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 149/382 (39%), Gaps = 25/382 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
                +DL A+  N   +    G  +  AVVK +AYG G    A A    G     V  V
Sbjct: 8   PAEAVVDLDAIARNVAVVRERVGGPQVMAVVKADAYGHGLVPAARAALAGGATWLGVAHV 67

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
            E + LR    +A +                  +   +++V       +   +   +   
Sbjct: 68  HEALALRGAGVEADLLAWILTPGTDLVPALRRGVDVSVAAVWALEEVVAAARASATTARI 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L+VDTG +R G S +E                 ++    +H A AD P       QL  
Sbjct: 128 HLEVDTGMSRGGASPEEWPALLDAVAGHVADGTVRVRGTWAHFASADVPGDPSVPAQLAA 187

Query: 182 FRTLI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--- 233
           F   +  +   G+E      A+S+  L  P   + L R G++ YG +   + +       
Sbjct: 188 FEAALGTARRHGVEPGLRHHANSAAALFVPQARYDLVRVGLAAYGLSPAPDLATGADLGL 247

Query: 234 -TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              +T +AR+  +R+   G  VSYG      RD+ + +  +GY DG P   S        
Sbjct: 248 VPAMTLQARLAHVRRVPRGAGVSYGLTYTAERDTTLGLVPLGYGDGLPRHASWDGERS-- 305

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                G+  + G    I G++ MD  + D+ D   +  G+   + GP    +   DD A 
Sbjct: 306 -----GEVLVAGARRRIAGRVCMDQVVLDLGDDA-VAPGEVAVVLGPGTRGEATADDWAR 359

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
           A+GT +++++ R+G R  + YT
Sbjct: 360 AAGTISWEIVTRVGARVPRRYT 381


>gi|302337568|ref|YP_003802774.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
 gi|301634753|gb|ADK80180.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
          Length = 402

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 98/389 (25%), Positives = 160/389 (41%), Gaps = 32/389 (8%)

Query: 2   HSNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
            +N  LR    ++DL  L  N  ++   SG      ++K NAYG G    A      GV 
Sbjct: 5   ENNHPLRRTQAEVDLDLLSKNIRTLWNRSGCEGYLLLLKANAYGHGSIACAKMAEELGVT 64

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117
              V + +E   LR    +  + +L  +   +    FD ++   +SS+      +++   
Sbjct: 65  FGGVAAYQEVRFLRSAGVRLPLLLLEDLFDDEIAPAFDADVSFSVSSLAYAEKVARVAEK 124

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G      L VDTG  RLG    E +       + +   L  + SH   +D+    V + 
Sbjct: 125 AGKVGKVHLNVDTGMGRLGCFPDELMKVAGYVHHSRWLALEGLFSHFPSSDEGDLSVPTA 184

Query: 178 QLERFRTLISHYK--GIEA---SLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP 231
           Q+E F  L    +  GI       A+S  ++  P    F + RPG+S +G       +H 
Sbjct: 185 QIELFSRLDRELEAAGIRPKWRHFANSGAVIDFPAASSFDMIRPGVSSFGIYPSKEVTHD 244

Query: 232 MQ--TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           +    V++ ++ I+ IR    G  + YG      R+S IAV  IGY DGY    S     
Sbjct: 245 VGLFRVLSLKSAILSIRTFPKGAKIGYGSTFVTERESRIAVVPIGYGDGYVRAFSNNSD- 303

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGP--------D 340
                       + G  VP++G+I+MDM   D+TD    +  GD   + G         +
Sbjct: 304 ----------VLVHGRRVPVVGRISMDMITVDLTDLPESVATGDEAVLVGEQAWEDRSGE 353

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I  +D+A   GT +Y++   +  R  + +
Sbjct: 354 IDAEDLAARIGTISYEVTCLLTARVPRVF 382


>gi|161779848|gb|ABX79410.1| VanTc4 [Enterococcus casseliflavus]
          Length = 700

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 96/364 (26%), Positives = 158/364 (43%), Gaps = 31/364 (8%)

Query: 15  ALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  +     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRVIPSTTKVMAVVKADAYGCDAKTVAGTLERAGVDFFAVATIEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  + S         L   G+     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELNRYSLIQTVVSEAHGQ---ALARTGLPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190
           RLG++    L+     F     +++ I SHL  +D   +        Q+  F  L++   
Sbjct: 467 RLGVAPD--LETVRKLFALPSLKITGIFSHLGSSDQLDTASILRTQAQITCFDDLLAGLS 524

Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEAR 241
                     L SS GIL  P  H+   RPGI L G     N+    +     ++T +A 
Sbjct: 525 ARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 584

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +   AGE + YG      R + I + +IGY DG P  LS    + S          
Sbjct: 585 LVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQGFQLSY--------- 635

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            +G ++P +G + MDM + D+TD   + V   +++          A  + T   +L+ R+
Sbjct: 636 -QGVLLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTA---ADQAQTITNELISRL 691

Query: 362 GTRY 365
           G+R 
Sbjct: 692 GSRI 695


>gi|294791096|ref|ZP_06756254.1| alanine racemase [Scardovia inopinata F0304]
 gi|294458993|gb|EFG27346.1| alanine racemase [Scardovia inopinata F0304]
          Length = 460

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 104/413 (25%), Positives = 173/413 (41%), Gaps = 50/413 (12%)

Query: 6   FLRLKIDLTALKNNWHSMNALS------------GNARTAAVVKDNAYGLGCEKIAPALY 53
             +  +DL AL++N   +  L+            G A+   VVK +AYG G    A A  
Sbjct: 28  PAQAIVDLAALRDNMRHLTDLADEAAKSGKNPAQGPAQVMGVVKADAYGHGLIPTALAAL 87

Query: 54  NAGVQDFFVTSVEEGVKLRLYTP---QARIF--VLYGIHPGQEKIIFDTNLIPVISSVPQ 108
             G          E + LR       +ARI   +  G +   +K+I   ++   + SV  
Sbjct: 88  AGGATWLGTAQSREALLLRKLGIGPDRARILTWLYNGKYDPFDKLI-GHDIDIALGSVQG 146

Query: 109 LT-FYSKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHL 164
           +    +   + G      ++VDTGF R G +    +EAL+      ++ L  +  + SHL
Sbjct: 147 IEAVAAAARTAGKKARVHIKVDTGFGRNGFTPEEFEEALNLLKEKVHENLLDVVGVWSHL 206

Query: 165 ACADDPSSH----VNSVQLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRP 215
           A AD+P+          Q+  F   +      G+      LA+++  L  P  H++L RP
Sbjct: 207 AVADNPADPECRAATEEQIASFSRFVDRMDNAGLHPSLRHLANTAATLTRPQIHYELVRP 266

Query: 216 GISLYGGTDKINK----SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
           G+ LYG              ++  +T +A++  ++   AG  +SYG     T+ +  A  
Sbjct: 267 GVGLYGYEPDPAMGTASDWGLKPAMTVQAQLGTVKNLPAGHSISYGRTYMTTQATSTADL 326

Query: 272 AIGYADGYPLTLSGLDSEHSPSV-FLGGKGFIKGYMVP----ILGKITMDMTMFDITD-- 324
            +GYADG   + SG +   S  V   G    I     P    I G++ MD  + D+    
Sbjct: 327 PVGYADGIHRSASGFNRAGSLGVDHPGAPVRIMTSQGPKIVHISGRVCMDQCILDLQGFA 386

Query: 325 -SLSIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             L +  GD +++FGP       +   DD A A+GT +Y++   +  R  + Y
Sbjct: 387 SDLGVCEGDTVELFGPGRGEQFGEPTADDWARAAGTISYEIFTCLRNRIPRLY 439


>gi|283797687|ref|ZP_06346840.1| alanine racemase [Clostridium sp. M62/1]
 gi|291074583|gb|EFE11947.1| alanine racemase [Clostridium sp. M62/1]
          Length = 422

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 161/381 (42%), Gaps = 33/381 (8%)

Query: 8   RLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+IDL  +++N+ ++ +++    +    VK NAYG G  +   AL  AG     V +++
Sbjct: 11  WLEIDLDTIRSNFAALRSMAGPGIKIMPAVKANAYGHGIVESCRALEQAGADYLGVGNID 70

Query: 67  EGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E + LR    Q  I +  G +      +    +LIP I SV      S+L      HP  
Sbjct: 71  EAILLRENGIQTPILIFAGNLVEEVADLYIRYSLIPTIFSVKAAQAISRLSKA--EHPVF 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS--SHVNSVQLERFR 183
           L ++TG  RLG++ +E  DF   +      ++  I SH+A AD P         Q  RF 
Sbjct: 129 LGIETGRGRLGVNAEEFPDFVRQTAALPGIKIEGIYSHMAAADWPDKPHEYADWQYRRFL 188

Query: 184 TLISHYKGIEAS-----LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT- 237
                 K +  S     LA++ G +  PN       PG +++G +    +       ++ 
Sbjct: 189 DGTRVLKELGLSVPFMQLANTPGSIAYPNLRLSGICPGRAVWGYSPLEKRD--GHPALSF 246

Query: 238 ----AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
                ++R+++++  + G+        +L     I V A G +DG             P+
Sbjct: 247 PMKAWKSRLLMVKDVIGGKFGPGYQAVRLDVPKHIGVMAGGISDGIS-----------PN 295

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
              GG   ++G  VP+   I ++ T+ D+TD      GD + +FG     +I ++++  A
Sbjct: 296 FANGGSVLLRGKRVPVASSICLEHTILDLTDCPEAAEGDEVVLFGKQGDAEITMEELRAA 355

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
            G    +    I    ++ Y 
Sbjct: 356 FGRDLMEFWTGITPHVSRIYV 376


>gi|304390969|ref|ZP_07372921.1| alanine racemase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304325852|gb|EFL93098.1| alanine racemase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 442

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 98/441 (22%), Positives = 166/441 (37%), Gaps = 84/441 (19%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S   +R  ++L+A + N   M   + +++  A+VK NAYG G E++A A   AG +   V
Sbjct: 7   SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66

Query: 63  TSVEEGVKLRLYTPQ----------------------------------ARIFVLYGIHP 88
               E  +LR Y  +                                   RI        
Sbjct: 67  AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYAPH 126

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEAL---D 144
                +  + +   +S++ QL   S+   + G      L+VDTG  R G + ++      
Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSRACDAAGKRARLHLKVDTGLCRAGATDEDFPVLCK 186

Query: 145 FTHNSFNKKLGQLSLIISHLA---CADDPSSHVNSVQLERFRTL--ISHYKGIEA---SL 196
                    L ++S + SHLA        +      QL+ F     ++   G+      +
Sbjct: 187 LARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLRHI 246

Query: 197 ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALAGE 252
           A+++GI+  P  H+ L R GIS YG +     +   Q     V+  E  ++ +++   G 
Sbjct: 247 AATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVMRLETNVVQVKRVEKGA 306

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            VSYGG+        + +  +GYADG                   G+ +IKG   PI+G+
Sbjct: 307 AVSYGGEWVAPGPRWLGLLPVGYADGLHRLAKNR-----------GETWIKGRRAPIVGR 355

Query: 313 ITMDMTMFDITDSLS---------IEVGDYIQIFGPD--------------IKLDDVALA 349
           I MD  + D+  ++          +E G+   IFG                   DD A  
Sbjct: 356 IPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDRLLGGIPGVPALPTADDWAEW 415

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           + T NY+++  I     + Y 
Sbjct: 416 TDTINYEVITSISPNVPRVYV 436


>gi|192360177|ref|YP_001981190.1| alanine racemase [Cellvibrio japonicus Ueda107]
 gi|190686342|gb|ACE84020.1| alanine racemase [Cellvibrio japonicus Ueda107]
          Length = 379

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 117/378 (30%), Positives = 181/378 (47%), Gaps = 22/378 (5%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M ++  + L IDL A+  NWH +   ++ +   AAVVK NAYGLG   +  AL   G   
Sbjct: 13  MITSSGI-LTIDLHAICANWHFLKNQVAPHVDVAAVVKANAYGLGAVPVVRALRKEGCTT 71

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
           FF  + EE +   L        VL G+  G E    +  L PV+ S+  +  ++    +C
Sbjct: 72  FFFATKEEALASGLNGEHCLKIVLSGVRSGDEPFFVEGQLTPVLYSLADVQRWNAYAKNC 131

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               P  L+VDTG  R+G+S++E   F   +          ++SHLACAD PS   N  Q
Sbjct: 132 CKRLPCILKVDTGMTRMGMSIEELEAFC-EAHASIHIAPLFLMSHLACADTPSHPANQRQ 190

Query: 179 LERFRTLIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           L+ F+  +      +  I+ASLA+S+GILLG ++HF L RPG +LYG        + ++ 
Sbjct: 191 LQLFKQALDIAQVRFPEIKASLANSAGILLGADWHFDLVRPGAALYGINPVSGIPNLLKP 250

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T    ++ IR       V Y         S +AV A GYADG   TL           
Sbjct: 251 VITLSLPVLQIRSLQHDAYVGYSATHFAKAGSRLAVVAGGYADGIHRTLGFKPLAQ---- 306

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALASG 351
                    G     +G+++MD  +FDI+        +VGDY+++    + L+ +   + 
Sbjct: 307 -------FNGMAFEAVGRVSMDSCVFDISQCPENRLPQVGDYLEVVNESLSLNFLMERNA 359

Query: 352 TTNYDLLVRIGTRYAKFY 369
           +  Y++L  +GTR+ + Y
Sbjct: 360 SLGYEVLNSLGTRFHRIY 377


>gi|298529139|ref|ZP_07016542.1| alanine racemase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510575|gb|EFI34478.1| alanine racemase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 371

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 104/381 (27%), Positives = 172/381 (45%), Gaps = 29/381 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L++ I   ++++N+  ++  +  AR  AVVK +AYG G E+ A  L+ AG   F V SV
Sbjct: 1   MLKVHIQTRSIEDNFAFLSRRT-TARVMAVVKADAYGHGLEETARCLHQAGADRFGVGSV 59

Query: 66  EEGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
           +EG +LR       I+ +L  + P    ++    +IP I S  QL    +   S   + P
Sbjct: 60  QEGARLRDCLDAPEIYSLLGPVSPEDYHLLARHRIIPFIHSREQLKALQEASCSFRGTIP 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERF 182
            A++++TG NRLG    +  +        +  +L ++ SHL+ AD          QL+ F
Sbjct: 120 VAIKLETGMNRLGFRGGDLHELLETWEKCRGLKLHMLASHLSLADSVQGRQEVLRQLKTF 179

Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----- 233
               RT+ +     E SLA+S+ IL  P  H    RPGISLYG     +     +     
Sbjct: 180 EDYCRTMQARGHEFEKSLANSAAILAHPETHLDCVRPGISLYGDNPFEHTPWASKGEGLA 239

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +   A ++ +     G  VSYG      RD  IAV   GYAD Y   LS         
Sbjct: 240 QAMHVRAPVLAVHHLEKGAGVSYGLCFTAPRDMRIAVIGCGYADNYSRGLSNR------- 292

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
               G    +G  +P+LG++ M +++ D + +  I  G  + + G +    +   ++A  
Sbjct: 293 ----GWMLYQGRRMPVLGRVCMQLSVVDASHAGDIAPGCEVYVLGGEGRQLLSAREMAGW 348

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
             + +Y++   +G    + Y+
Sbjct: 349 LDSISYEIFCSLGK-NPRTYS 368


>gi|239906401|ref|YP_002953142.1| alanine racemase [Desulfovibrio magneticus RS-1]
 gi|239796267|dbj|BAH75256.1| alanine racemase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 110/385 (28%), Positives = 167/385 (43%), Gaps = 31/385 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            + +LR +I    +  N+  + A  G  +  +V+K +AYG G  + A AL  AG + F V
Sbjct: 4   EHNYLRTRIRTENIVANYTRLRAQGG--QVVSVIKADAYGHGLLETATALAGAGCESFAV 61

Query: 63  TSVEEGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGV 120
            S  EG  LR     A I  +L  + P  E +I + NL+P +    QL   +      G 
Sbjct: 62  GSAAEGAALRDAGCTAEILSLLGPVLPEDELLIIEKNLVPFMHDFDQLARLAVACTRLGR 121

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQL 179
               AL+ DTG  RLG    +A             ++ ++ SHLA ADDP +    + Q 
Sbjct: 122 VAKVALKFDTGMARLGFVEADAPKLAEMLCASPCIEVVMVSSHLATADDPGAFEFVAEQG 181

Query: 180 ERFRTLISHYKG----IEASLASSSGILLGPNY-HFQLTRPGISLYGGTD-----KINKS 229
            RF  +    +       ASL +S+GIL       F   R GI+LYG        +    
Sbjct: 182 ARFARICQALRHGGLTFRASLCNSAGILAHAGAIGFDARRAGIALYGVNPFAGSAREALG 241

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           H +   +    RI+ +     G  +SYG      RD  +A+ A GYAD Y   LS     
Sbjct: 242 HGLLPAMETVTRIVSVHDLPRGASISYGRTYVAERDMRVAIVAAGYADAYSRGLSN---- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   + G  VPILG++ M +T  D++   ++  GD I + G +    +  DD
Sbjct: 298 -------KGFMCLAGRRVPILGRVCMQLTAVDVSGLDAVRPGDAIHLLGGEGPGAVTADD 350

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +AL  GT  Y++   +G    + + 
Sbjct: 351 LALWWGTIPYEVFCLLGL-NPREHV 374


>gi|154486952|ref|ZP_02028359.1| hypothetical protein BIFADO_00785 [Bifidobacterium adolescentis
           L2-32]
 gi|154084815|gb|EDN83860.1| hypothetical protein BIFADO_00785 [Bifidobacterium adolescentis
           L2-32]
          Length = 455

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 100/408 (24%), Positives = 166/408 (40%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL AL++N   + ++ G          +VK +AYG G    A A    G 
Sbjct: 27  QRRYPAQAIVDLAALRDNMRHLVSVVGGPHSGTAVMGIVKADAYGHGLVPAALAALAGGA 86

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FY 112
                    E + LR       R  +L  ++ G E     + D ++   + S+  +    
Sbjct: 87  TWLGTAQSHEALLLRKAGIGPDRCHILTWVYSGAEVPFDELVDNDIDISVGSLAGIDGVA 146

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G +    ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 147 AAARRLGKTARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 206

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P          +Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 207 PDVPEFVASTDMQVETFKDFTRRMEAAGIPPEIRHLANTAATLSRPEIHFELTRPGIGLY 266

Query: 221 GGTDKINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P     +  +T +A++  ++   AG  +SYG       D+  A+  +GYA
Sbjct: 267 GYEADPAMGTPSTYSLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPSDTSTAIVPLGYA 326

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   +       +  + G++ MD  + D+      L I
Sbjct: 327 DGIHRSASGFDMEGAKHVTKPGGPVRVMTSEGPRLYRVSGRVCMDQFILDLHGSAAELGI 386

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD   A+ T +Y++   +  R  + Y
Sbjct: 387 HEGDNVELFGPGRGEDYAEPTADDWGRAADTISYEIFTCLRNRIPRLY 434


>gi|258543958|ref|ZP_05704192.1| alanine racemase, biosynthetic [Cardiobacterium hominis ATCC 15826]
 gi|258520804|gb|EEV89663.1| alanine racemase, biosynthetic [Cardiobacterium hominis ATCC 15826]
          Length = 365

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 89/359 (24%), Positives = 164/359 (45%), Gaps = 22/359 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ AL++N   +   +G A+  AVVK +AYG G   + PAL +  V  F V S++E ++
Sbjct: 18  IDVAALRHNVRVLRQQAGAAKLVAVVKADAYGHGVANVLPALTD--VDGFAVASMDEALQ 75

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           LR       + +L GI    E  +    + +P + S  QL +   +          ++VD
Sbjct: 76  LRQLGVGQPVLLLEGIFAADEAALCAQHDFVPCVHSPEQLAWLRGV----DGISAWVKVD 131

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
           +G +RLG +  +A  +     + +  +   + SH ACAD         QL R    ++  
Sbjct: 132 SGMHRLGFAAADAASWLPQVLSLQQVRWLGVASHFACADAEDLSDAQAQLAR-LDALALP 190

Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIR 246
            G +  LA+S+ +   P    ++ R G++LYG +   +       ++ V++ + +++ +R
Sbjct: 191 AGWQRCLANSAALFALPEARGEVVRAGLALYGMSPFADGDAARLGLRPVLSLQTQVLAVR 250

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +  AG+   Y    +      +A  A+GY DG+P  +          V    +  + G  
Sbjct: 251 RLQAGDFAGYSHGFQAQVAGNLATIALGYGDGFPRAI----------VSGAVQLLLNGKR 300

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            P++G++ MDM +  + +  +  VGD + +FG     + VA  + T  Y L   +  R 
Sbjct: 301 YPLVGRVAMDMALLWLGED-TAAVGDAVLVFGEGNPAERVAAQAATIPYTLTTMLTARV 358


>gi|308178091|ref|YP_003917497.1| alanine racemase [Arthrobacter arilaitensis Re117]
 gi|307745554|emb|CBT76526.1| alanine racemase [Arthrobacter arilaitensis Re117]
          Length = 399

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 156/390 (40%), Gaps = 54/390 (13%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNA--------------YGLGCEKIAPALY 53
           R  IDL+A++NN   +               +               YG G  ++A A  
Sbjct: 26  RAVIDLSAIRNNVKQI--------------SDVVAPAAVMAVVKADAYGHGAIQVAKAAL 71

Query: 54  NAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
             G +      V E + LR     A +           +   D  L   +S        +
Sbjct: 72  EGGARWIGCAHVTEALALREAGIDAPMLAWLHTEDTPFEAAIDAGLDLGVSGWELERVAA 131

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS---FNKKLGQLSLIISHLACADDP 170
              +        ++VDTG  R G +++   D  + +     + L +   I SHLA AD+P
Sbjct: 132 AARAVQTPARIHIKVDTGLGRNGSTMEALPDLLNRASDFQEEGLLRAVGIFSHLAVADEP 191

Query: 171 SSHVNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTD- 224
                  QL  F T I   +          +A++ GIL  P+ H+++ R G+ LYG +  
Sbjct: 192 ERPETDEQLAVFNTAIELIEAAGFDLEVRHIANTPGILSRPDSHYEMVRLGLGLYGLSPF 251

Query: 225 --KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
                +S  ++  +T + R+  ++K   G+ VSYG   K   ++ + +  +GYADG P  
Sbjct: 252 EEDTPQSFGLRPAMTVKTRVANVKKVRPGQGVSYGLNYKTEGETYLGLIPMGYADGLPR- 310

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE--VGDYIQIFGP- 339
                      +  G    + G   P+ G+I MD  + D+   ++ E  +G    IFG  
Sbjct: 311 -----------IATGAPVTVNGRTYPVRGRIAMDQCVIDLGADINPEDFLGAEAIIFGDG 359

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
              ++  A A+ T NY+++ RI  R  ++Y
Sbjct: 360 GQSVNTWAYAANTINYEVVTRISPRVPRYY 389


>gi|309810948|ref|ZP_07704748.1| alanine racemase [Dermacoccus sp. Ellin185]
 gi|308435102|gb|EFP58934.1| alanine racemase [Dermacoccus sp. Ellin185]
          Length = 400

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 156/392 (39%), Gaps = 37/392 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           N   R+ +DL A+ +N + M   +  A    VVK +AYG G    A A  + G     V 
Sbjct: 12  NAPARVVVDLDAIADNANEMTRRAEGASVLGVVKGDAYGHGLVPSARAAVSGGSTWLGVA 71

Query: 64  SVEEGVKLRLYT------PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLM 116
            + E + LR             +               +  +   + SV +L    +   
Sbjct: 72  QLAEAMTLRRAAAEGAGDLDVPVLSWLHAPGSPFAEAIEARIDLGVPSVGELDGIAAAAR 131

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSH 173
             G      L+VDTG  R G    +       +   +     ++  +++H   AD+P   
Sbjct: 132 RVGRRARVHLKVDTGLARNGAYGDDWPRLVEAAKAAQATGDVEVVGLMTHFVRADEPGHP 191

Query: 174 VNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227
            N+ Q+ERF +       + ++     +++S      P   F L RPG++LYG +   + 
Sbjct: 192 ENTAQIERFTSAATDCESAGFELEVRHMSNSPATFFLPEARFDLVRPGLALYGLSPAPDL 251

Query: 228 ---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
              +   ++  ++  A + + ++  AG+ VSYG      R + +A   +GYADG P   S
Sbjct: 252 ATSEELTLRPAMSITANVTVTKRVPAGQGVSYGHTYTTPRGTTLADIPVGYADGVPRAAS 311

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG------ 338
            +           G   + G    I G++ MD          ++  GD + +FG      
Sbjct: 312 NV-----------GPLLVAGARTTIAGRVCMDQI-VTDAGDAAVAAGDEVVLFGRASDGT 359

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
                 D A A+GT +Y+++ R+ TR  + YT
Sbjct: 360 QGPSAQDWADAAGTISYEIVTRMSTRLPRVYT 391


>gi|225420488|ref|ZP_03762791.1| hypothetical protein CLOSTASPAR_06833 [Clostridium asparagiforme
           DSM 15981]
 gi|225040871|gb|EEG51117.1| hypothetical protein CLOSTASPAR_06833 [Clostridium asparagiforme
           DSM 15981]
          Length = 331

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 94/319 (29%), Positives = 144/319 (45%), Gaps = 26/319 (8%)

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           EEGV LR +     I VL   HP Q   +    + P + ++ Q    S+L    GV    
Sbjct: 1   EEGVILRRHGIGKMILVLGVTHPDQYGELIRYQIRPTVFTLRQAERLSELACREGVRAKL 60

Query: 125 ALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L VDTG +R+G+   E + +   +       ++  + +H A AD+        QL  + 
Sbjct: 61  HLAVDTGMSRIGMEPDETSAEMVLSMSRLPGIEIEGMFTHFARADERDKESARAQLAAYL 120

Query: 184 TLISHYK--GIEA---SLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234
                 K  GIE      ++S+GI+ G P+    L R GIS+YG         ++  +  
Sbjct: 121 NFSELLKSRGIEIPLKHCSNSAGIVEGLPSNSLDLVRAGISIYGLYPSDEVDRETVHLTP 180

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+  ++RI  I+    G  VSYGG     R + IA   +GY DGYP +LS          
Sbjct: 181 VMELKSRISYIKTIRPGTPVSYGGTFVARRPTRIATIPVGYGDGYPRSLSSR-------- 232

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I+G   PILG++ MD  M D+TD    E  D + + G D    I ++++A   
Sbjct: 233 ---GSVLIRGRRAPILGRVCMDQFMVDVTDIPEAEEEDVVTLIGRDGGDQISVEELARLG 289

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           G  +Y+L+  +G R  + Y
Sbjct: 290 GGFHYELICDLGKRVPRVY 308


>gi|119963624|ref|YP_947004.1| alanine racemase [Arthrobacter aurescens TC1]
 gi|119950483|gb|ABM09394.1| alanine racemase [Arthrobacter aurescens TC1]
          Length = 390

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 158/379 (41%), Gaps = 31/379 (8%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71
           DL+A+ +N  ++   +      AVVK NAYG G  ++A     AG        + E + L
Sbjct: 2   DLSAISDNIQALKKRTEAPFFMAVVKGNAYGHGLVEVARTAVKAGADWLGTAQLSEAIAL 61

Query: 72  RLYTPQARIFVLYGI---HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127
           R       I     +        +   + ++   + SV QL   + +    G      L+
Sbjct: 62  RQAGITVPILSWLYLASQTSATIREALENDIDVSLGSVGQLEVLAGIAKRLGRPAVVHLE 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +D+G +R G   ++  +    +   +L    ++  I +HLA AD P+   N   +  F  
Sbjct: 122 LDSGLSRGGARKEDWAELVAQARQAELAGNLRVRGIWTHLAWADVPAHPGNITAVAEFED 181

Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236
            +              ++SS+ IL  P +HF + R G+++YG             ++  +
Sbjct: 182 AVREAHQAGLAPELRHVSSSANILDRPEFHFDMVRAGLAIYGLAPADHLDPADFGLRPAL 241

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  A +++++K  AG  VSY  Q        + +  +GYADG P  +SG           
Sbjct: 242 SVTAPLVMLKKVPAGTGVSYEHQAITYEPRYLGLIPLGYADGIPKGISGRSV-------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
                I G  VP++GK+ MD  M D+  D+  I+VGD   +FG         DD   A G
Sbjct: 294 ---VNIGGRTVPVIGKVCMDQFMVDLGPDASGIDVGDTAVLFGDPACGAASADDWGAAIG 350

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           +   +++ RI  R  + Y 
Sbjct: 351 SHGDEIINRIAPRLPRAYA 369


>gi|126735551|ref|ZP_01751296.1| alanine racemase [Roseobacter sp. CCS2]
 gi|126714738|gb|EBA11604.1| alanine racemase [Roseobacter sp. CCS2]
          Length = 345

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 132/360 (36%), Positives = 192/360 (53%), Gaps = 26/360 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL A+  NW +++A++ + +TAAVVK N YGLG   +A AL+ AGV+ FFV   EE 
Sbjct: 6   LIIDLDAVVANWRALDAMT-DCKTAAVVKANGYGLGAANVAKALFKAGVRQFFVAVAEEA 64

Query: 69  VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R    P+  I V  G   G   II +  L P+++SV QLT +   +     HP+ +Q
Sbjct: 65  AAIREELGPKPEISVFSGHMAGDTDIIRELGLTPMLNSVEQLTHH---LETLPGHPFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+ +QE       +  +K     L++SHLACAD+P   +N  QL +F+ +  
Sbjct: 122 LDTGMNRLGMEMQEWAAVAELALAQK---PRLVMSHLACADEPDHPMNPYQLAQFKKMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
                  SLA++ GILLGP YHF LTRPGI LYGG      S     V+  +  +I +R 
Sbjct: 179 GITA-PRSLAATGGILLGPEYHFDLTRPGIGLYGGLPFAQAS----PVIELDLPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE+V YG   + TR S IA  + GYADG    LS                +      
Sbjct: 234 VAEGEVVGYGNVWQATRASRIATVSAGYADGIARILS-----------DKATLYHGDTPC 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++ +++MD+   D+TD         + + GP   +DD+A A+ T  Y++L ++G RY +
Sbjct: 283 PLVSRVSMDLLTIDVTDLTETPK--KLTLIGPHQGVDDLAQAANTIGYEVLTQLGDRYNR 340


>gi|154507817|ref|ZP_02043459.1| hypothetical protein ACTODO_00299 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797451|gb|EDN79871.1| hypothetical protein ACTODO_00299 [Actinomyces odontolyticus ATCC
           17982]
          Length = 422

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 144/399 (36%), Gaps = 47/399 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   + A +  A   A VK NAYG G   +A A  + G     V  + E   
Sbjct: 19  VDLAAIRHNLGVLRAAAPGALQLATVKANAYGHGLLPVARAALDGGADWLGVAQLAEAFT 78

Query: 71  LRLYTP-------QARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
           LR            A I               + ++   +S         +     G   
Sbjct: 79  LRRGLDEAAVARADAPILAWISTSSSDFAAAIEADIDLSVSWTWVLADICAAAREAGRPA 138

Query: 123 PYALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPS---SHVNS 176
              +++DTG +R G +L +          + +  L  +    SH++ ADDPS   +   +
Sbjct: 139 RVHVKIDTGMSRAGSTLADLPALASALRMAADDGLVDVVGAWSHMSRADDPSEAGNASTA 198

Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
             +  F   ++             L+++SGIL     H+ + R GI LYG +     +  
Sbjct: 199 SHVRIFEEGLAILADAGVTPRIRHLSATSGILWHREAHYDMVRAGIGLYGLSPDPAVATS 258

Query: 232 MQ----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            Q      +   A +  ++    G   SYGG         I +  +GY DG     S   
Sbjct: 259 EQLGLTPALELSAPLTSVKVIEEGTPASYGGTWVAPTRRWIGLVPLGYGDGILRAASNQA 318

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-------------LSIEVGDYI 334
                + F         +  P++G++ MD  M D+  +                  GD  
Sbjct: 319 RVVVHTAF-------GPFNAPLIGRVCMDQFMVDLGPAEGSPGTPTARSGQAPAIPGDIA 371

Query: 335 QIFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369
            +FG  I      DD A A+ T NY+++  +G    + Y
Sbjct: 372 TLFGSGISGEALADDWAQAADTINYEIVTHLGAHIPRIY 410


>gi|119025514|ref|YP_909359.1| alanine racemase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765098|dbj|BAF39277.1| alanine racemase [Bifidobacterium adolescentis ATCC 15703]
          Length = 452

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 100/408 (24%), Positives = 166/408 (40%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL AL++N   + ++ G          +VK +AYG G    A A    G 
Sbjct: 24  QRRYPAQAIVDLAALRDNMRHLVSVVGGPHSGTAVMGIVKADAYGHGLVPAALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FY 112
                    E + LR       R  +L  ++ G E     + D ++   + S+  +    
Sbjct: 84  TWLGTAQSHEALLLRKAGIGPDRCHILTWVYSGAEVPFDELVDNDIDISVGSLAGIDGVA 143

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G +    ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 144 AAARRLGKTARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 203

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P          +Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVASTDMQVETFKDFTRRMEAAGIPPEIRHLANTAATLSRPEIHFELTRPGIGLY 263

Query: 221 GGTDKINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P     +  +T +A++  ++   AG  +SYG       D+  A+  +GYA
Sbjct: 264 GYEADPAMGTPSTYSLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPSDTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   +       +  + G++ MD  + D+      L I
Sbjct: 324 DGIHRSASGFDMEGAKHVTKPGGPVRVMTSEGPRLYRVSGRVCMDQFILDLHGSAAELGI 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD   A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDNVELFGPGRGEDYAEPTADDWGHAADTISYEIFTCLRNRIPRLY 431


>gi|110680421|ref|YP_683428.1| alanine racemase [Roseobacter denitrificans OCh 114]
 gi|123361723|sp|Q163V1|ALR_ROSDO RecName: Full=Alanine racemase
 gi|109456537|gb|ABG32742.1| alanine racemase [Roseobacter denitrificans OCh 114]
          Length = 344

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 135/363 (37%), Positives = 186/363 (51%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+AL  NW S+NALS +  TAAVVK NAYGLG    A AL  AG + FFV   EEG
Sbjct: 6   LTIDLSALAANWRSLNALS-DVETAAVVKANAYGLGVGTAASALAEAGARHFFVAVAEEG 64

Query: 69  VKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           V LR        I V  G   G   +I D  L P+I+S+ Q+    + +     H + +Q
Sbjct: 65  VALRQALGAGPQISVFSGHMAGDTALIRDAGLTPMINSIDQM---IRHVEALPEHDFGIQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+   E       +  +     SL++SHLACAD+PS  +N  QL+ F  +  
Sbjct: 122 LDTGMNRLGMEDGEWRAVREVATQRP---PSLVMSHLACADEPSHQMNRQQLDCFVEMTQ 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
                  SLA++ GIL+GP+YHF LTRPGI LYGG   ++       VV  +  +I +R 
Sbjct: 179 DITA-PRSLAATGGILMGPDYHFDLTRPGIGLYGGLPFVDA----LPVVQLDVPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V Y      T  + IA  + GYADG    +      H+    L           
Sbjct: 234 VHPGETVGYANTWTATAPARIATISAGYADGLIRAMGAKARLHAGDTAL----------- 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+++MD+   D+T   S    D +Q+ G    +D VA  + T  Y++L  +G RY +
Sbjct: 283 PVVGRVSMDLIGVDVTALGSDP--DSLQLIGRHQSVDTVAGFADTIGYEILTSLGDRYKR 340

Query: 368 FYT 370
            YT
Sbjct: 341 VYT 343


>gi|257462583|ref|ZP_05626993.1| alanine racemase, biosynthetic [Fusobacterium sp. D12]
 gi|317060235|ref|ZP_07924720.1| alanine racemase [Fusobacterium sp. D12]
 gi|313685911|gb|EFS22746.1| alanine racemase [Fusobacterium sp. D12]
          Length = 354

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 152/370 (41%), Gaps = 24/370 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   L++N   +   +       V+K NAYGLG   +   L   G+  F V S+
Sbjct: 2   RAWVEIDTEHLRHNIREIQKRAEGLEVCGVIKANAYGLGVLPVTKILEEEGIHFFAVASL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE  ++R       I +L  +   +     +      +SS  +L + S+           
Sbjct: 62  EEAKEVRSAGIAGEILILGSLFHEEILEAEEAGFHINVSSREELEWISQHA---PKVKIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERF 182
           +++DTG  RLG S QE  D    +    L Q+S I SH + AD  S         Q+ERF
Sbjct: 119 IKIDTGMTRLGFSYQEGRDILAFAKQLSL-QISGIFSHFSDADGFSQEAQKYTETQIERF 177

Query: 183 RTLISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
               +        + +S  ++   N     + R GI +YG           + VVT + +
Sbjct: 178 LPYANQKDIPYRHIFNSGALVQHRNQKIGNMVRAGICMYGILGSTPIP-DFKNVVTLKTK 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +K      VSYG    L +        IGYADG    L+            GGK  
Sbjct: 237 VLFKKKVEEDTYVSYGRLYCLKKGETYVTLPIGYADGVKKYLAN-----------GGKVE 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           I G + PI+G I MDM M  I ++L   I++G  + ++  +I   +      T  +D+  
Sbjct: 286 ILGELCPIIGAICMDMMMVKIPENLEDKIKIGTEVIVWNNEII--EKNNIPETCTWDMFT 343

Query: 360 RIGTRYAKFY 369
            +G R  + Y
Sbjct: 344 ALGRRVQRIY 353


>gi|294677111|ref|YP_003577726.1| alanine racemase [Rhodobacter capsulatus SB 1003]
 gi|294475931|gb|ADE85319.1| alanine racemase [Rhodobacter capsulatus SB 1003]
          Length = 349

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 123/364 (33%), Positives = 189/364 (51%), Gaps = 26/364 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL A+  NW +++A+ S    T AVVK ++YGLG  ++A  L  AG + FFV + EE
Sbjct: 6   LRIDLDAVLANWRALDAMTSAATETGAVVKADSYGLGAARVARVLARAGARKFFVAAAEE 65

Query: 68  GVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G  +R    +   IFV  G   G  ++I D  L P+++SV Q+    + +       + +
Sbjct: 66  GAAVRQALGEGPEIFVFSGHMAGDTEMIGDLGLTPMLNSVEQV---KRHVDALPGAAFGV 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLGL   +    +            L++SHLAC+D+P   +N++QL+ FR + 
Sbjct: 123 QLDTGMNRLGLEPADWAAVSAELIAAG---PKLVMSHLACSDEPEHPMNAMQLKNFRAMT 179

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
               G++ +L+++ GILLGP+YHF +TRPGI LYGG          + VV     ++ IR
Sbjct: 180 DGL-GLKRALSATGGILLGPDYHFDVTRPGIGLYGGLPFETA----RAVVRLSLPVVQIR 234

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               GE V Y       R+S IA  A GYADG     SG               +     
Sbjct: 235 TVAPGETVGYANSWTAARESRIATVAAGYADGLSRRFSG-----------KATLWAGDTP 283

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P++G+++MD+   D+TD   +     ++I GP   +D +A  +GT  Y++L  +G RY 
Sbjct: 284 CPLVGRVSMDLITVDVTDLPEVP--QSLEILGPHQGVDALAEVAGTIGYEILTALGQRYQ 341

Query: 367 KFYT 370
           + Y 
Sbjct: 342 RSYV 345


>gi|241896461|ref|ZP_04783757.1| alanine racemase [Weissella paramesenteroides ATCC 33313]
 gi|241870441|gb|EER74192.1| alanine racemase [Weissella paramesenteroides ATCC 33313]
          Length = 381

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 146/376 (38%), Gaps = 26/376 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R+KI   A+ +N       SG       VK NAYG G   +A A   AGV    V  
Sbjct: 17  RPTRIKISQAAVTHNVAVTRQASGAKFMFLAVKANAYGFGLIPMAQAAIKAGVDGLAVAV 76

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
           ++E + LR       I +L    P   K+I D +LI  +S +  L    + L     +  
Sbjct: 77  LDEALALRQAGITVPIIILGITLPQYAKLIADNDLIATVSDLDWLQAAQQNLAGSQSTLQ 136

Query: 124 YALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
             L VDTG  R+G   +E+L    T+ +      +   I++H + +D  ++     QL  
Sbjct: 137 VNLGVDTGMGRIGFRNRESLSEAITYLASQPIFFKYQSIMTHFSESDSLATDYFQKQLSN 196

Query: 182 FRTLISHYK-GIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSHPM---QTVV 236
           +  L           LA+S   +           R G  +YG      +  P    + V+
Sbjct: 197 WHRLTDGLPMPPMVHLANSGAAMYHADEIPTDYIRAGTVVYGIEPSRGEVLPDNYLKPVL 256

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E  +I +++  A   +SYG          +    IGYADG P  + G           
Sbjct: 257 TLETELIFVKQMPANVGISYGHTYYTHEGEWVGTVPIGYADGLPRPIQGF---------- 306

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352
             +  + G   PI+G+I MD  M  + + L +  G  + I G     +  L+DVA   G 
Sbjct: 307 --EVLVNGQKAPIIGQIAMDQLMISLPEKLPV--GTVVTIIGKQGQYENTLEDVAQHVGL 362

Query: 353 TNYDLLVRIGTRYAKF 368
             + +   +  R  + 
Sbjct: 363 APWVVATGLQDRLMRV 378


>gi|306823362|ref|ZP_07456737.1| alanine racemase [Bifidobacterium dentium ATCC 27679]
 gi|304553069|gb|EFM40981.1| alanine racemase [Bifidobacterium dentium ATCC 27679]
          Length = 452

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/404 (25%), Positives = 164/404 (40%), Gaps = 40/404 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             +  +DL AL++N   + ++ G          VVK +AYG G    A A    G     
Sbjct: 28  PAQAIVDLAALRDNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGATWLG 87

Query: 62  VTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FYSKLM 116
                E + LR       R  +L  ++ G       +   ++   + S+  +        
Sbjct: 88  TAQSHEALLLRKAGIGLDRCHILTWVYNGTAVPFDELVANDIDVSVGSLGGIDGVAEAAR 147

Query: 117 SCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             G +    ++VD+GF R G +      AL        + +  +    SHLA AD P   
Sbjct: 148 RLGKTARVHVKVDSGFGRNGFTPAGFDAALAKLVPLVKEGVLHVVGQWSHLAVADAPDVP 207

Query: 174 V----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD 224
                   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LYG   
Sbjct: 208 EFVASTDRQIENFKDFTRRMEAAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLYGYEA 267

Query: 225 KINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
                 P     +  +T +A++  ++   AG  +SYG       D+  A+  IGYADG  
Sbjct: 268 DPAMGTPGTYGLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPTDTSTAIVPIGYADGIH 327

Query: 281 LTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDI---TDSLSIEVGD 332
            + SG D E +  V   GG   +       +  + G++ MD  + D+    D+L I  GD
Sbjct: 328 RSASGFDMEGAKHVVKAGGPVRVMTVEGPRLYRVSGRVCMDQFILDLHGSADALGIHEGD 387

Query: 333 YIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +++FGP       +   DD   A+ T +Y++   +  R  + Y
Sbjct: 388 TVELFGPGRGEDYAEPTADDWGRAADTISYEIFTCLRNRIPRLY 431


>gi|171741011|ref|ZP_02916818.1| hypothetical protein BIFDEN_00077 [Bifidobacterium dentium ATCC
           27678]
 gi|283455601|ref|YP_003360165.1| alanine racemase [Bifidobacterium dentium Bd1]
 gi|171276625|gb|EDT44286.1| hypothetical protein BIFDEN_00077 [Bifidobacterium dentium ATCC
           27678]
 gi|283102235|gb|ADB09341.1| alr Alanine racemase [Bifidobacterium dentium Bd1]
          Length = 452

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/404 (25%), Positives = 164/404 (40%), Gaps = 40/404 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             +  +DL AL++N   + ++ G          VVK +AYG G    A A    G     
Sbjct: 28  PAQAIVDLAALRDNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGATWLG 87

Query: 62  VTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FYSKLM 116
                E + LR       R  +L  ++ G       +   ++   + S+  +        
Sbjct: 88  TAQSHEALLLRKAGIGLDRCHILTWVYNGTAVPFAELVANDIDVSVGSLGGIDGVAEAAR 147

Query: 117 SCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             G +    ++VD+GF R G +      AL        + +  +    SHLA AD P   
Sbjct: 148 RLGKTARVHVKVDSGFGRNGFTPAGFDAALAKLVPLVKEGVLHVVGQWSHLAVADAPDVP 207

Query: 174 V----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD 224
                   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LYG   
Sbjct: 208 EFVASTDRQIENFKDFTRRMEAAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLYGYEA 267

Query: 225 KINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
                 P     +  +T +A++  ++   AG  +SYG       D+  A+  IGYADG  
Sbjct: 268 DPAMGTPGTYGLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPTDTSTAIVPIGYADGIH 327

Query: 281 LTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDI---TDSLSIEVGD 332
            + SG D E +  V   GG   +       +  + G++ MD  + D+    D+L I  GD
Sbjct: 328 RSASGFDMEGAKHVVKAGGPVRVMTAEGPRLYRVSGRVCMDQFILDLHGSADALGIHEGD 387

Query: 333 YIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +++FGP       +   DD   A+ T +Y++   +  R  + Y
Sbjct: 388 TVELFGPGRGEDYAEPTADDWGRAADTISYEIFTCLRNRIPRLY 431


>gi|260906034|ref|ZP_05914356.1| alanine racemase [Brevibacterium linens BL2]
          Length = 407

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 93/398 (23%), Positives = 155/398 (38%), Gaps = 47/398 (11%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            +R +ID+ AL+ N   +      AR   VVK NAYG G + +APAL+ AG +DF V ++
Sbjct: 10  LVRAEIDVAALQANAAVLAKRLAPARLKCVVKANAYGHGIDIVAPALFAAGWRDFCVATI 69

Query: 66  EEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHP 123
            E + LR        I                  +   +S+V  L            +  
Sbjct: 70  NEALHLRELLGDDVTITAWLYGPTTDLDAAVAAGIELGVSTVDSLERLRDAARRTNTTAR 129

Query: 124 YALQVDTGFNRLGLSLQEALDF---------------THNSFNKKLGQLSLIISHLACAD 168
             L+VDTG  R GL+  +                      S      ++  I+SH A AD
Sbjct: 130 LHLKVDTGLGRNGLAPADWKRALVKLKTLDARTESDGADASATTPELEIVGIMSHYAVAD 189

Query: 169 DPSSHVNSVQLERFRTLISHY--------------KGIEASLASSSGILLGPNYHFQLTR 214
           +P     + Q + F +                   + +E  +A+S   L    +     R
Sbjct: 190 EPERVETAQQTQVFDSAHRELSAVLDGAQGRLGESERLEVHIANSPAALTLSPFPGTSAR 249

Query: 215 PGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
            G+SLYG +    + +K   +   +   +++I ++    G   SYG       D+  A+ 
Sbjct: 250 VGLSLYGLSPLGDQTSKDLGLVPAMRLVSQVINLKDIPTGHGASYGLTFTAAADTRFALV 309

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331
             GY DG   + S              +  I+G   P++G+I MD  + ++     + +G
Sbjct: 310 PGGYGDGIARSASN-----------KAEVSIRGTRYPVVGRIAMDQMIVEVGAG-EVAIG 357

Query: 332 DYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRYAKF 368
           D + IFGPD     +    + T NY+++ RI  R  + 
Sbjct: 358 DEVVIFGPDGPSAAEWGEWAETINYEIVTRISERVDRV 395


>gi|20137245|sp|Q9RER4|ALR_AQUPY RecName: Full=Alanine racemase
 gi|6665784|gb|AAF23014.1|AF212103_1 alanine racemase [Aquifex pyrophilus]
          Length = 341

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 95/364 (26%), Positives = 164/364 (45%), Gaps = 31/364 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVT 63
               L+I    + +N   ++  SG  R  AVVK NAYG+G  +++  L     V  F V 
Sbjct: 2   RRAVLEILEERIIHNVKEIHRFSGK-RIIAVVKANAYGIGVREVSRILEGLEEVDAFAVA 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
             +EGV+LR    + +I +L GI     K++ + +L PVIS    L           +  
Sbjct: 61  CTQEGVELRECGIKKKILILGGILEEDVKLLEEYDLTPVISDPEHLKVLK-----DRNIK 115

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + ++ DTG  RLG + +            K  ++  ++SH +   D +   + +Q++RF 
Sbjct: 116 FHVKYDTGMGRLGFTNE----------IIKDPRVEGVMSHFSSPADRN--FSKLQIKRFE 163

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            ++ +Y+ ++     SS  L+         R G+++YG     +    ++  +   AR+I
Sbjct: 164 EILKNYEKVKYIHLESSAGLIYRVPFTTHVRVGLAIYGEKPLKDYPLEVKPALRLRARLI 223

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +++      VSYG      R + + V A GYADG   TLS                  +
Sbjct: 224 SVKELPENYPVSYGRTYITKRKTKLGVVAFGYADGLMKTLSNRSFL-----------IFE 272

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G  VPI+G ITMDMTM D++ +     GD++ I   +     +A  +GT  Y+++  +  
Sbjct: 273 GRKVPIIGNITMDMTMVDLSGT-EARTGDWVYIVNEERSFTPLARDAGTIPYEIMCNLSR 331

Query: 364 RYAK 367
           R  +
Sbjct: 332 RVER 335


>gi|170016499|ref|YP_001727418.1| alanine racemase [Leuconostoc citreum KM20]
 gi|169803356|gb|ACA81974.1| Alanine racemase [Leuconostoc citreum KM20]
          Length = 370

 Score =  312 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 158/377 (41%), Gaps = 29/377 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +++I   ALKNN   +  +SG  +    VK NAYGLG    A A    GV    V  
Sbjct: 7   RPTQIEISQKALKNNVAVVKRVSGAEKIFLAVKSNAYGLGLIPTAKAAVAGGVYGLAVAI 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E + LR     A I +L        +++   +++  + S+  L   ++ ++       
Sbjct: 67  IDEALALRHERITAPILILGISPAEYAELMAVQHIMATVVSLDWLQEAAQYLTGEQRLHV 126

Query: 125 ALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +L VDTG  R+G     SL EA+D+     ++ +     + +H A +D   +   ++QL+
Sbjct: 127 SLGVDTGMGRIGFRDRQSLSEAIDYVQ--AHRDIFDYVGLATHFAESDSADTDYFNMQLQ 184

Query: 181 RFRTLISHYKGIE-ASLASSSGILLGPN-YHFQLTRPGISLYGGTDKINKSHPMQ---TV 235
           R+  L       E   +A+S   +   N    ++ R G  LYG      +    +    V
Sbjct: 185 RWHKLTDGLPEPEYYHVANSGAAMYHANEVPHEVIRVGTVLYGVEPSRGELWDGRELAPV 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   + +  +++  AGE +SY  +   + +  I    IGY DG+   ++G          
Sbjct: 245 MALRSEMNFVKELPAGEGISYSHKYTTSENEWIGTVPIGYGDGWLRKMTGF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 + G   PI+G++ MD  M  +     +  G  + + G D      ++DVA  + 
Sbjct: 296 ---HVIVDGQYAPIVGQVAMDQLMIRLPHEYPV--GTKVTLIGKDGGLENTIEDVAQHAD 350

Query: 352 TTNYDLLVRIGTRYAKF 368
              ++++  +  R  + 
Sbjct: 351 LAPWEIMTGMQDRLHRI 367


>gi|325479259|gb|EGC82355.1| alanine racemase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 373

 Score =  311 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 145/357 (40%), Gaps = 28/357 (7%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARI 80
             + +++      AVVK NAYGLG   IA  + +  +  F V    E   LRL      I
Sbjct: 18  EKVKSMNNQTPICAVVKANAYGLGAVPIATYIEDH-ISYFAVARYSEAKALRLSGIIKPI 76

Query: 81  FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ 140
            +L  +   +     + ++   I  +       K ++  ++    L +DTG  RLG    
Sbjct: 77  LILGYVSVEEAIECAEYDIDICIFDMDYTFEIDKALNKKLNG--HLAIDTGHTRLGFRNY 134

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI----EASL 196
           E      +  N K  ++    +H A AD+  +  + +Q + F   IS+ +         +
Sbjct: 135 ETQKIL-SLKNLKNIRIRGAFTHYATADEKDTSFSKLQTKLFEETISNVRDELNIENIHI 193

Query: 197 ASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGE 252
           A+S+  +        + R GIS+YG           S  ++      +RI  ++    G 
Sbjct: 194 ANSAAGISFDV-KSDMIRLGISMYGIYPSDYLKDTSSIDLEKTFRFMSRIAFVKDVKKGT 252

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SYG      +D  IA   IGYADGY    S +           G+  + G    + G+
Sbjct: 253 PISYGRTFYTKKDMKIATVPIGYADGYFRAFSNI-----------GEVLVNGENARVCGR 301

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + MD  M D+++    ++GD ++I+  DI  +  A    T  Y+L+     R  + Y
Sbjct: 302 VCMDQMMIDVSNI-KCKIGDEVEIY-YDIYKE--ANKIDTIAYELMTSFDMRLERVY 354


>gi|323699155|ref|ZP_08111067.1| alanine racemase [Desulfovibrio sp. ND132]
 gi|323459087|gb|EGB14952.1| alanine racemase [Desulfovibrio desulfuricans ND132]
          Length = 374

 Score =  311 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 104/391 (26%), Positives = 166/391 (42%), Gaps = 38/391 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M     LR++I L  L++N+     +    R   V+K +AYG G  ++A AL   G   F
Sbjct: 1   MIDYNKLRVRIHLDNLRHNYRLFTKIHD--RVIPVIKSDAYGHGLVEVASALEKDGADTF 58

Query: 61  FVTSVEEGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  V E  KLR      RI  +L  I     + ++   ++  IS   QL          
Sbjct: 59  AVGFVHEAAKLRRAGCDKRILALLGPISDEDIQSLWTDRILTPISHWAQLRRVLAASEQN 118

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII--SHLACADDPSSHVN-S 176
                 L+ DTG  RLG   +EA +        K G ++ ++  SHLA AD+P    + +
Sbjct: 119 GPLDIGLKFDTGMRRLGFLPEEAGEVA---ALLKGGNVTPVMATSHLARADEPGREKDVA 175

Query: 177 VQLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KIN 227
           +Q  RF+  +    G    +EA+LA+S+G ++  N      R GI LYG        +  
Sbjct: 176 LQARRFQAALDGLAGAGFVVEANLANSAGGMVHENCRMDSMRLGIGLYGCDPLEGAGEER 235

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               +   +   A ++ +     GE +SYG      RD+++A+  +GYAD Y   LS   
Sbjct: 236 LPGKLLPAMEVTAPVMQVHPLKRGESISYGWTFTAERDAMVAIVGVGYADNYSRALSNR- 294

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT----DSLSIEVGDYIQIFG----P 339
                     G+  + G  VPI G++ M MT  D+T    + + +  GD   + G     
Sbjct: 295 ----------GEMVLHGRRVPIRGRVCMQMTAVDVTELMGEGIEVLPGDEAWLLGGPGEH 344

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            +  +D+A    T  Y+    +G    + Y 
Sbjct: 345 PVTPEDLAEWGNTITYEAFCLLGQ-NRREYV 374


>gi|160936433|ref|ZP_02083802.1| hypothetical protein CLOBOL_01325 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440716|gb|EDP18454.1| hypothetical protein CLOBOL_01325 [Clostridium bolteae ATCC
           BAA-613]
          Length = 374

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 159/381 (41%), Gaps = 29/381 (7%)

Query: 6   FLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           + ++ IDL  +  N+  + + L       AVVK +AYGLG   IA  L  AG   F VT 
Sbjct: 3   YTQMDIDLDVIAENYKKVSDRLPEETGIIAVVKADAYGLGAVPIAKKLEKAGCPMFAVTF 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHP 123
           +EE VKLR    +A I V+      +  I     LI  I+        S +L+    S P
Sbjct: 63  MEEAVKLREAGIKAPILVMMPAESKELLIAGKHKLIITITDYEMAKQISDELVKQSYSLP 122

Query: 124 YALQVDTGFNRLGLSLQEAL----DFTHNSFNKKLGQLSLIISHLACADDPSSHVN---S 176
             L+VD G +R+G+ L++ L    +               + SHL  A    ++     +
Sbjct: 123 AHLKVDCGLSRMGIVLKDRLEEAAEEAAKIHALPNLNTEAVFSHLTAAGTEGAYAALDLA 182

Query: 177 VQLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
            Q +RF  LI   K     I+  L SS   +  P       R G  LYG   +      +
Sbjct: 183 EQ-QRFFELIKMLKKKNISIKTHLMSSDPYIWYPQTPGDYIRVGSILYGICPERYSCCGI 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++    I+ I+       VSYG   +  R + IAV  +G+ADG    LS        
Sbjct: 242 KNCMSMNTYIVQIKWIPRDTEVSYGPLYRTVRRTKIAVVPVGFADGIRRALSN------- 294

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                G+  I G  VPI+GKI  D T+ D+TD   ++VGD + IFG +        D A 
Sbjct: 295 ----KGEMLIHGKRVPIIGKICCDHTILDVTDIEEVKVGDEVTIFGRNGEESQTAGDYAE 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
               +  +  V    R  + Y
Sbjct: 351 LCNASAPETTVIFSARIPRNY 371


>gi|315655821|ref|ZP_07908719.1| D-alanine racemase [Mobiluncus curtisii ATCC 51333]
 gi|315489885|gb|EFU79512.1| D-alanine racemase [Mobiluncus curtisii ATCC 51333]
          Length = 442

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 98/441 (22%), Positives = 166/441 (37%), Gaps = 84/441 (19%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S   +R  ++L+A + N   M   + +++  A+VK NAYG G E++A A   AG +   V
Sbjct: 7   SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66

Query: 63  TSVEEGVKLRLYTPQ----------------------------------ARIFVLYGIHP 88
               E  +LR Y  +                                   RI        
Sbjct: 67  AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYAPH 126

Query: 89  GQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEAL---D 144
                +  + +   +S++ QL   S+   + G      L+VDTG  R G + ++      
Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSRACDAAGKRARLHLKVDTGLCRAGATDEDFPVLCK 186

Query: 145 FTHNSFNKKLGQLSLIISHLA---CADDPSSHVNSVQLERFRTL--ISHYKGIEA---SL 196
                    L ++S + SHLA        +      QL+ F     ++   G+      +
Sbjct: 187 LARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLRHI 246

Query: 197 ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALAGE 252
           A+++GI+  P  H+ L R GIS YG +     +   Q     V+  E  ++ +++   G 
Sbjct: 247 AATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVLRLETNVVQVKRVEKGA 306

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            VSYGG+        + +  +GYADG                   G+ +IKG   PI+G+
Sbjct: 307 AVSYGGEWVAPGPRWLVLLPVGYADGLHRLAKNR-----------GETWIKGRRAPIVGR 355

Query: 313 ITMDMTMFDITDSLS---------IEVGDYIQIFGPD--------------IKLDDVALA 349
           I MD  + D+  ++          +E G+   IFG                   DD A  
Sbjct: 356 IPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDCLLGGIPGAPALPTADDWAEW 415

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           + T NY+++  I     + Y 
Sbjct: 416 TDTINYEVITSISPNVPRVYV 436


>gi|325282969|ref|YP_004255510.1| Alanine racemase [Deinococcus proteolyticus MRP]
 gi|324314778|gb|ADY25893.1| Alanine racemase [Deinococcus proteolyticus MRP]
          Length = 370

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/374 (27%), Positives = 165/374 (44%), Gaps = 33/374 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTS 64
             R  I   AL+ N   ++  +G      + K NAYG G E +AP       V    V +
Sbjct: 16  RARALISARALRGNLKFLSGKAGVPLLWPM-KANAYGHGVEAVAPVAAESEAVWGMAVAT 74

Query: 65  VEEGVKL--RLYTPQ--ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
             E ++L   L+       + +     P +   +    +   +S+      Y++  +   
Sbjct: 75  PAEALELSSVLHGLNCPKPVVLFGASFPDEWPALVAAGVQLTVST------YAEAAALPS 128

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L+V+TG NRLG S  EA+        +  GQL+ + SH + A++    ++  Q  
Sbjct: 129 GARAHLKVNTGMNRLGASPAEAVAVGRRLQER--GQLAGVFSHFSEAEEADQTLSRQQFR 186

Query: 181 RFRTLISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            F+ +  H+      + +SS +L LGP     L RPG+S YG          +   +T +
Sbjct: 187 TFQEVARHFPEALHHMGNSSAVLNLGPLPGMDLARPGLSSYGVMPSPGTPE-LTPAMTLQ 245

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ARI  +  A AGE VSY G   L RD+LIA   IGYADGYP   +G             +
Sbjct: 246 ARITYLHTAAAGERVSYNGLTTLQRDTLIATLPIGYADGYPRRATGQ-----------AE 294

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTN 354
             + G   P+LG++ MD  M D T  L +  GD++ ++G D     + + +VA  S    
Sbjct: 295 VLLAGERRPVLGRVCMDQLMVDATG-LDVSTGDWVTLWGQDAGGRELHVSEVAQWSEMAE 353

Query: 355 YDLLVRIGTRYAKF 368
           Y++L R+  R  + 
Sbjct: 354 YEILTRLSVRVERV 367


>gi|149196848|ref|ZP_01873901.1| alanine racemase [Lentisphaera araneosa HTCC2155]
 gi|149139958|gb|EDM28358.1| alanine racemase [Lentisphaera araneosa HTCC2155]
          Length = 360

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 161/375 (42%), Gaps = 23/375 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M       L IDL ALK N+H +  LS  ++   V+K NAYGLG ++IA  L  +G    
Sbjct: 1   MAHQHRNTLSIDLRALKENFHKLEKLSSPSQVMPVLKANAYGLGAKEIAAELKESGATII 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V  + E +   L      I +L  I P +  +    N I  I S+      S       
Sbjct: 61  AVADLNEALD--LRDLDLDILILGDIIPEEIPLAIRNNFILPIGSLESAQLISAHAGE-R 117

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L +D+G  RLG+   +AL+        +      + +H   A       +  Q+E
Sbjct: 118 RVFCHLVIDSGMGRLGIPAAQALEEFAEIAKLEKLHFDGVYTHFPVAYS-DREFSLQQIE 176

Query: 181 RFRTLISHYKG--IEASLASSSGILLGP---NYHFQLTRPGISLYGGTD-KINKSHPMQT 234
            F+  ++          +A+S GI   P      F   R G++LYG  D +  +   ++ 
Sbjct: 177 AFKDFLNQCPHTFKRIHIANSDGIHNIPEACQAPFNFVRTGLNLYGCFDLEGAQRVQLEP 236

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           ++T  +R++ +R+  AG  + YG +  L + +L+   A+GYADG+P              
Sbjct: 237 ILTLASRLVRVRELNAGMSIGYGREWLLEKTTLVGTVALGYADGFPFN------------ 284

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
                   +G+  P++G+I+MD    D++   + + GD +   G  I +   A   GT  
Sbjct: 285 -TKAYVLYQGHKCPVIGRISMDYITIDLSQCPNAKSGDAVLCLGDAIPVAKWAKWKGTIT 343

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++  +G R  + Y
Sbjct: 344 YEIICSLGQRIKRIY 358


>gi|317152532|ref|YP_004120580.1| alanine racemase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942783|gb|ADU61834.1| alanine racemase [Desulfovibrio aespoeensis Aspo-2]
          Length = 384

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 101/396 (25%), Positives = 161/396 (40%), Gaps = 41/396 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M     ++++I L  L  N      + G      V+K +AYG G  ++   L   G    
Sbjct: 1   MIDYNKIQVEISLDNLAANVRRFQGVCGT--VIPVIKSDAYGHGLAEVTRTLAAEGATTL 58

Query: 61  FVTSVEEGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V  V E VKLR      RI  +L  +       +++ +++  I+++ QL+  +      
Sbjct: 59  AVGYVNEAVKLRCLGWTGRILALLGPVDEADAAALWEHDILAAIANMDQLSRVAGAARTR 118

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-SVQ 178
                 L+ DTG  RLG   +                  +  +HLA AD P    N ++Q
Sbjct: 119 GRLDICLKFDTGMRRLGFRPEGLAALVDALRANPALVPVMASTHLASADVPEHEANVTMQ 178

Query: 179 LERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ- 233
             RF++++   +     +EA++A+S+G +          R GI++YGG      S   + 
Sbjct: 179 AGRFQSVLDGLEQAGYQVEANIANSAGAMAHKACRMDSMRLGIAMYGGNPFHGTSWEERG 238

Query: 234 ----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
                 +   A ++ +     GE VSYG      RD  +AV  +GYAD Y  +LS     
Sbjct: 239 QGLLPTMQVSAPVLHVHTLRQGEGVSYGWTHVAGRDCEVAVVGVGYADNYSRSLSSR--- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT------------DSLSIEVGDYIQIF 337
                   G   IKGY VPILG++ M MT+ D+T            D   +  GD   + 
Sbjct: 296 --------GFMNIKGYRVPILGRVCMQMTVVDVTGLMGEGLAGELGDGPGVRPGDQAWLL 347

Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G      I  +D+A   GT  Y+    +G    + Y
Sbjct: 348 GGPAPGTITPEDLAGWWGTIPYEAFCLLGM-NPRSY 382


>gi|256824606|ref|YP_003148566.1| alanine racemase [Kytococcus sedentarius DSM 20547]
 gi|256687999|gb|ACV05801.1| alanine racemase [Kytococcus sedentarius DSM 20547]
          Length = 391

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 145/382 (37%), Gaps = 28/382 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            R  +D TA+++N       +G A    VVK   YG G    A A    G     V    
Sbjct: 11  YRAIVDATAIRDNLRRCVQWAGGADVMGVVKAGGYGHGALAAARAALAGGATLIGVAQPT 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYA 125
           E V LR     + +                 ++   +S+   L          G      
Sbjct: 71  EAVALRRAGIASEVLAWLLTPQADLDEAVAHDITLGVSAPWALDAVRDAARRAGRPVRVH 130

Query: 126 LQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L++DTG +R GL+  +  D       +  +    +  + SHLACADDP       Q + F
Sbjct: 131 LELDTGMSRGGLAPSDWPDLFARARQAEREGSLTVQGVFSHLACADDPGHPATDHQRDAF 190

Query: 183 RTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233
              ++             LA+S+  L  P+  + L RPG+  YG +   +    +   ++
Sbjct: 191 ERGLAAAVRAGLDPRWRHLANSAATLTRPDLAYDLVRPGLVSYGLSPIPDLRTSQDLGVR 250

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  AR+  +R+  AG  VSY        +  + V  +GY DG P  LSG        
Sbjct: 251 PAMTLVARLSAVRRVPAGTGVSYSHTHVTPTERWLGVVPLGYGDGVPRGLSGRGRVRVTG 310

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGP----DIKLDD 345
              GG         P  G++ MD  + D+     D    E GD + +FG          D
Sbjct: 311 --SGGAV-----DAPFAGRVCMDQFVVDLGPVEGDRPPAEAGDEVVLFGDGADGGPTAQD 363

Query: 346 VALASGTTNYDLLVRIGTRYAK 367
            A A  T +Y+++ R+G R  +
Sbjct: 364 WATAMDTISYEIVTRVGPRVPR 385


>gi|257877592|ref|ZP_05657245.1| serine/alanine racemase [Enterococcus casseliflavus EC20]
 gi|257811758|gb|EEV40578.1| serine/alanine racemase [Enterococcus casseliflavus EC20]
          Length = 700

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 96/364 (26%), Positives = 157/364 (43%), Gaps = 31/364 (8%)

Query: 15  ALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDFFAVATLEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  I S         L    +     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAHG---HALAQTSIPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D   +        Q+  F  L++   
Sbjct: 467 RLGVAPD--LETVTGLYALPSLKITGIFSHLGSSDQLDTASILRTQAQITCFDDLLAGLS 524

Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEAR 241
                     L SS GIL  P  H+   RPGI L G     N+    +     ++T +A 
Sbjct: 525 ARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 584

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +   AGE + YG      R + I + +IGY DG P  LS    + S          
Sbjct: 585 LVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGIPRALSNQGFQLSY--------- 635

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            +G ++P +G + MDM + D+TD   + V   +++          A  + T   +L+ R+
Sbjct: 636 -QGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTT---ADQAQTITNELISRL 691

Query: 362 GTRY 365
           G+R 
Sbjct: 692 GSRI 695


>gi|257867513|ref|ZP_05647166.1| serine/alanine racemase [Enterococcus casseliflavus EC30]
 gi|257801569|gb|EEV30499.1| serine/alanine racemase [Enterococcus casseliflavus EC30]
          Length = 700

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 96/364 (26%), Positives = 157/364 (43%), Gaps = 31/364 (8%)

Query: 15  ALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDFFAVATLEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  I S         L    +     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAHG---HALAQTSIPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D   +        Q+  F  L++   
Sbjct: 467 RLGVAPD--LETVTGLYALPSLKITGIFSHLGSSDQLDTASILRTQAQITCFDDLLAGLS 524

Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEAR 241
                     L SS GIL  P  H+   RPGI L G     N+    +     ++T +A 
Sbjct: 525 ARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 584

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +   AGE + YG      R + I + +IGY DG P  LS    + S          
Sbjct: 585 LVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQGFQLSY--------- 635

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            +G ++P +G + MDM + D+TD   + V   +++          A  + T   +L+ R+
Sbjct: 636 -QGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTT---ADQAQTITNELISRL 691

Query: 362 GTRY 365
           G+R 
Sbjct: 692 GSRI 695


>gi|116329770|ref|YP_799489.1| alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332652|ref|YP_802369.1| alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122663|gb|ABJ80556.1| Alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116127519|gb|ABJ77611.1| Alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 379

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 102/391 (26%), Positives = 173/391 (44%), Gaps = 38/391 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M       ++I   +L NN +S  + L   +   A++K NAYG G + +A      GV  
Sbjct: 1   MKETASSWIEISKRSLSNNLNSFRSILRPGSTLTAILKSNAYGHGTDLMAKLCIEEGVSH 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             V S+EE   +R   P+  I ++  I     +++ + D N   +I S P+      L S
Sbjct: 61  IGVNSIEEAQSIRQIDPKIPILIMGEIQNPEKRKEALSDPNFW-IIFSRPETARI--LSS 117

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNS 176
              +    L++DTG  RLG +  E L +T     K    L  I +H A  +D      + 
Sbjct: 118 LNPAPKLHLKIDTGMGRLG-NHGETLKYTLGELKKNGITLDGICTHFASTEDVLEHKYSL 176

Query: 177 VQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----- 226
           +Q+++F   +       YK +   + +S+  +L  + H+++ R GISLYG    I     
Sbjct: 177 MQIQKFEKAVLLAESLGYKNLIRHMCASASTMLFSSAHYEMVRVGISLYGLWPSIQTRLS 236

Query: 227 -----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                NK+  +  +++ + RI+ I+   A   + YG   + +  + +A+  IGY +G   
Sbjct: 237 LNLNGNKNFQLSPILSWKTRIVHIQNHPADSYIGYGSTFQTSYPTKVAIVPIGYYEGLDR 296

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340
            LS             G   + G    I+G+I M+MTM D+T     +VG  + + G D 
Sbjct: 297 KLS-----------SNGDMLVLGKRARIIGRICMNMTMLDVTHISGADVGSVVTVIGQDG 345

Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKF 368
              I  DD+A  + T NY++  RI     + 
Sbjct: 346 EELITADDIADRTHTINYEITTRISESVCRI 376


>gi|300172538|ref|YP_003771703.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811]
 gi|299886916|emb|CBL90884.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811]
          Length = 370

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 155/375 (41%), Gaps = 25/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +++I   ALK+N   +   SG  +    VK NAYGLG    + A    GV    V  
Sbjct: 7   RPTQIEISKKALKHNVAVVKQTSGADKIFLAVKSNAYGLGLVPTSKAAVAGGVYGLAVAV 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E + LR       I VL        +++   +++  + S+  L   ++ ++       
Sbjct: 67  IDEALALRHERITEPILVLGISQAKYAELMAVQHIMATVVSLSWLKEAAQSLTGEQRLQV 126

Query: 125 ALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +L VDTG  R+G   +E  A   T+   +K +     + +H A +D   +    +QL+R+
Sbjct: 127 SLGVDTGMGRIGFRTRESLAQAITYLQAHKDIFDYVGLATHFAESDSVQTDYFYMQLKRW 186

Query: 183 RTLISHYKGIE-ASLASSSGILLG-PNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
             +       +   +A+S   +        ++ R G  LYG      ++     +Q V++
Sbjct: 187 HDITDGLPEPKYYHVANSGAAMYHADEVPHEVIRVGTVLYGVEPSRGELADGKNLQPVMS 246

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  +++  AGE +SY  +   + D  I    IGY DG+   +SG            
Sbjct: 247 LRSEMNFVKQLPAGEGISYSHKYTTSSDEWIGTVPIGYGDGWLRKMSGFS---------- 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G   PI+G++ MD  M  +     +  G  + + G D      L+DVA  +   
Sbjct: 297 --VIVDGQYAPIVGQVAMDQLMIKLPHEYPV--GTKVTLIGKDGDLENTLEDVAQHANLA 352

Query: 354 NYDLLVRIGTRYAKF 368
            ++++  +  R  + 
Sbjct: 353 PWEIMTGMQDRVHRI 367


>gi|320109228|ref|YP_004184818.1| alanine racemase [Terriglobus saanensis SP1PR4]
 gi|319927749|gb|ADV84824.1| alanine racemase [Terriglobus saanensis SP1PR4]
          Length = 397

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 93/399 (23%), Positives = 166/399 (41%), Gaps = 43/399 (10%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++   +  ++  + L  N  ++ A +G     AVVK + YG G  + AP L  AG +   
Sbjct: 7   NAMRPVWAEVSASKLTRNLRAVQATAG-VDVLAVVKADGYGHGAVECAPVLAAAGAKWLG 65

Query: 62  VTSVEEGVKLRLY------TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           VTSVEEGV++R            R+ V+ G+  G+        L PV+     L      
Sbjct: 66  VTSVEEGVRVRQALGILPQGIAPRVLVMCGVWAGEAVAAIRYALTPVVWEPYHLDLMEAE 125

Query: 116 MSC--GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                       ++VDTG  R G+    +          +   +L  ++SHLA A+    
Sbjct: 126 AKKLGLRDVAVHVEVDTGMARQGVRPGAQMAALLQRFGPESRLKLEGVMSHLASAEIVHG 185

Query: 173 HVNSVQLERFRTLISH-----YKGIEASLASSSGILLG---PNYHFQ--------LTRPG 216
                Q+ RF   +        +     + ++S +  G   P             +TR G
Sbjct: 186 AQTESQMARFACALEQVRETGLRPALVHVGNTSAVDCGVVMPQLRVMAESLGAMPMTRAG 245

Query: 217 ISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI 273
           ++LYG    +    P    + V+T + R++ +R+  AG+ V YGG     +   +A+  +
Sbjct: 246 LALYGYALDLEGGAPELHPEPVMTWKTRVVSLREVQAGDHVGYGGTFTAVKTMRLALLPV 305

Query: 274 GYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
           GYADG    LS             G   + G    ++G+++MD+T+ D+T+   +E+G+ 
Sbjct: 306 GYADGLRRELS----------SPAGAVLLHGRRAAVVGRVSMDLTIVDVTEIPGVEIGEE 355

Query: 334 IQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368
             + G      I  ++ A  + T  Y+++  I  R ++ 
Sbjct: 356 AVLIGAQGAERIGAEEHARWAETIPYEIICGISERVSRV 394


>gi|296110973|ref|YP_003621354.1| alanine racemase [Leuconostoc kimchii IMSNU 11154]
 gi|295832504|gb|ADG40385.1| alanine racemase [Leuconostoc kimchii IMSNU 11154]
          Length = 370

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 157/375 (41%), Gaps = 25/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +++I   ALK+N   +   SG  +    VK NAYGLG    + A    GV    V  
Sbjct: 7   RPTQIEISKQALKHNTEVVKKTSGADKIFLAVKSNAYGLGLIPTSKAAVAGGVYGLAVAI 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E + LR     A I +L        +++   +++  + S+  L   ++ +S       
Sbjct: 67  IDEALALRHERVTAPILILGISPAKYAELMAVQHILTTVVSLSWLKEAAQYLSGEQRLHV 126

Query: 125 ALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +L VDTG  R+G   +E  A    +   NK+L     + +H A +D  ++    +QL+R+
Sbjct: 127 SLGVDTGMGRIGFRDRESLAEAIAYLQENKQLFDYVGLATHFAESDSSNNDYFYMQLKRW 186

Query: 183 RTLISHYKGIE-ASLASSSGILLG-PNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
             +       E   +A+S   +        ++ R G  LYG      ++     +Q V+ 
Sbjct: 187 HDMTDGLPEPEFYHVANSGAAMYHADEVPHEVVRVGTVLYGVEPSRGELADGKNLQPVMA 246

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  ++   AGE +SY  +   T D  I    IGY DG+   ++G            
Sbjct: 247 LRSEMNFVKLLPAGEGISYSHKYTTTGDEWIGTVPIGYGDGWLRKMTGF----------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            K  + G+  PI+G++ MD  M  +     +  G  +   G D      ++DVA  +G  
Sbjct: 296 -KVIVDGHYAPIVGQVAMDQLMIRLPRQYPV--GTKVTFIGKDGGLENTIEDVAQHAGLA 352

Query: 354 NYDLLVRIGTRYAKF 368
            ++++  +  R  + 
Sbjct: 353 PWEIMTGMQDRLHRV 367


>gi|257873842|ref|ZP_05653495.1| serine/alanine racemase [Enterococcus casseliflavus EC10]
 gi|257808006|gb|EEV36828.1| serine/alanine racemase [Enterococcus casseliflavus EC10]
          Length = 700

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 96/364 (26%), Positives = 157/364 (43%), Gaps = 31/364 (8%)

Query: 15  ALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDFFAVATLEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  I S         L    +     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAHG---HALAQTSIPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D   +        Q+  F  L++   
Sbjct: 467 RLGVAPD--LETVTGLYALPSLKITGIFSHLGSSDQLDTASILRTQAQITCFDDLLAGLS 524

Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEAR 241
                     L SS GIL  P  H+   RPGI L G     N+    +     ++T +A 
Sbjct: 525 ARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 584

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +   AGE + YG      R + I + +IGY DG P  LS    + S          
Sbjct: 585 LVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQGFQLSY--------- 635

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            +G ++P +G + MDM + D+TD   + V   +++          A  + T   +L+ R+
Sbjct: 636 -QGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTT---ADQAQTITNELISRL 691

Query: 362 GTRY 365
           G+R 
Sbjct: 692 GSRI 695


>gi|255264281|ref|ZP_05343623.1| alanine racemase [Thalassiobium sp. R2A62]
 gi|255106616|gb|EET49290.1| alanine racemase [Thalassiobium sp. R2A62]
          Length = 345

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 128/362 (35%), Positives = 196/362 (54%), Gaps = 26/362 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL+A+  NW +++ +S  + TAAVVK N YGLG  ++A AL  AG + FFV + EE 
Sbjct: 6   LTIDLSAVIANWKALDQIS-TSETAAVVKANGYGLGSRRVARALARAGARKFFVATAEEA 64

Query: 69  VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R     +  I++  G   G   +I D  LIP+++S+ Q+  +   +    +HP+ +Q
Sbjct: 65  ANVRNVLGDEHEIYIFAGHMSGDTDMISDLGLIPLLNSLDQMVMH---LEALPNHPFGVQ 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG+   E       + ++      LI+SHLACAD+P    N++QL  FR++  
Sbjct: 122 LDTGMNRLGMEPAEWGAVRDMALSQN---PKLIMSHLACADEPDHTQNAMQLTSFRSMTD 178

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
               +  SLA++ GILLG +YHF LTRPG+ LYGG    N     + VV  +  +I +R 
Sbjct: 179 GVS-VPRSLAATGGILLGSDYHFDLTRPGVGLYGGAPFANA----KPVVQLDIPVIQVRD 233

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R S IA  + GYADG    +SG  +            + +G   
Sbjct: 234 VAVGEAVGYGASWVAERPSKIATISAGYADGLIRAMSGQATL-----------WHEGIPC 282

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P+ G+++MD+   D+TD        Y+ I  P+  +DD+A  +GT  Y++L  +G RY++
Sbjct: 283 PLAGRVSMDLLTVDVTDLPIPPR--YLSILCPEQSVDDLAAVAGTIGYEILTSLGGRYSR 340

Query: 368 FY 369
            +
Sbjct: 341 RF 342


>gi|20140680|sp|Q93A44|VANTE_ENTFA RecName: Full=Amino-acid racemase; AltName: Full=Vancomycin E-type
           resistance protein VanT
 gi|16612081|gb|AAL27444.1|AF430807_9 VanTE [Enterococcus faecalis]
          Length = 702

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 158/369 (42%), Gaps = 31/369 (8%)

Query: 10  KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +I  +A+ +N + +  +   N     VVK NAYG G  ++A  L   G+  F V ++EE 
Sbjct: 347 EISASAIHHNINEIRKIIPKNTNIMGVVKANAYGCGMVEVAYELEKIGISFFCVATIEEA 406

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           + LR    Q  I +L   HP +   I   NLI  I S         L    +     LQV
Sbjct: 407 IALRKSGNQGDILILGYTHPNRINDIKKYNLIQSIVSEEHGKV---LNLKKIPIRCHLQV 463

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTL 185
           DTG +RLG++    +      +     ++  I SHL  +D          + Q+  F  +
Sbjct: 464 DTGMHRLGVTPN--VTIIQQMYLFSNLKIEGIYSHLGSSDSLEQESIARTNTQIFLFNNI 521

Query: 186 ISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVV 236
           +S  +  GI      + SS GIL  P   F   R GI  YG              +Q +V
Sbjct: 522 LSDLEQMGISYGYTHIQSSYGILNYPELSFDFVRIGILCYGFLSDYNSPTKIPIDLQPIV 581

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             +A +I  R   AGE V YG   K+ + + I V +IGYADG P  LS            
Sbjct: 582 KVKASLITERIVEAGEYVGYGLGAKVEKRTRIGVVSIGYADGIPRALSNAKLTLE----- 636

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                 KG  +  +G I MDM + D+++   I + D + +  P+I    +A    T   +
Sbjct: 637 -----FKGQSIKQIGNICMDMMLVDLSEVEDISLNDELIVL-PNIS--KIADEEQTITNE 688

Query: 357 LLVRIGTRY 365
           LL R+G+R 
Sbjct: 689 LLSRLGSRL 697


>gi|229818028|ref|ZP_04448310.1| hypothetical protein BIFANG_03316 [Bifidobacterium angulatum DSM
           20098]
 gi|229784632|gb|EEP20746.1| hypothetical protein BIFANG_03316 [Bifidobacterium angulatum DSM
           20098]
          Length = 452

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 100/408 (24%), Positives = 163/408 (39%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL A+++N   + A  G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVDLKAMRDNMRHLVATVGGPQSGTAVMGVVKADAYGHGLLPSALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSV-PQLTFY 112
                    E + LR       R  +L  ++ G       + D ++   + S+       
Sbjct: 84  TWLGTAQSHEALLLRQLGIGPDRCHILTWVYNGTAVPFDELIDNDIDVSVGSLAGIDAIA 143

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G +    ++VD+GF R G + +    AL        + + ++    SHLA AD 
Sbjct: 144 AAARKLGKAARVHVKVDSGFGRNGFTPEGFDAALAKLVQLAQEGVIEVIGQWSHLAVADS 203

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+  F       K  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVESTERQIANFNAFTDRMKQAGIAPSIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G         P     +  +  +A++  ++   AG  +SYG      +++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPNTYKLKPAMRLQAQLGTVKDVEAGHGISYGRTYLTPQNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   +     P    + G++ MD  + D+      L I
Sbjct: 324 DGIHRSASGFDMEGAKHVDKPGGPVRVMTKQGPHIYHVSGRVCMDQFILDLHGSAAELGI 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 AEGDTVELFGPGRGEEYGEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|223984929|ref|ZP_03635032.1| hypothetical protein HOLDEFILI_02334 [Holdemania filiformis DSM
           12042]
 gi|223963098|gb|EEF67507.1| hypothetical protein HOLDEFILI_02334 [Holdemania filiformis DSM
           12042]
          Length = 607

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 99/380 (26%), Positives = 161/380 (42%), Gaps = 30/380 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +   +++D  AL++N   +   ++      AV+K NAYG G E  A  L   GV+ F V
Sbjct: 241 RDRAWVELDGIALRHNLTVLRKAMTPYQEIMAVLKANAYGHGLEPTADFLSRQGVRHFAV 300

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            +VEE   +R   P A I +L  + P +   +    L   ++S  Q     +L   G + 
Sbjct: 301 ATVEEAKVIRAVNPTAEILILGYVPPQRAAEVSRLRLSLTLTSYDQ---ACQLDQTGFAI 357

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQL 179
              L VDTG +RLG    E LD     ++    +++ + SHL  AD+  +        Q+
Sbjct: 358 DAHLPVDTGMHRLG-EAAEDLDAIVRYYSLSHLRITGLYSHLYEADNLDAEAVAHTQAQI 416

Query: 180 ERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PM 232
           +RF  +    K  GI+     L  S G L  P     L R GI+L+G            +
Sbjct: 417 DRFFHVADALKERGIDPGRLHLQGSYGFLNYPELRCDLVRFGIALFGCVAPFRSRMELDL 476

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V +   RI  +R    GE   Y        D+ +A+ +IGY+DG   + S        
Sbjct: 477 RPVASVHTRIAALRSLRKGEGAGYNHAWTAPCDTTVAILSIGYSDGLFRSSS-------- 528

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
             F G +  I G   P++G + MD  + D+  +L   +G+ + + G      I   +VA 
Sbjct: 529 --FQGVEVLIHGQRRPLIGAMCMDQCLVDLG-TLPAAIGEEVVVIGIQGSESISALEVAE 585

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
            + T   + L  +  R  + 
Sbjct: 586 KNETIVPETLSMLRGRMPRI 605


>gi|322437297|ref|YP_004219509.1| alanine racemase [Acidobacterium sp. MP5ACTX9]
 gi|321165024|gb|ADW70729.1| alanine racemase [Acidobacterium sp. MP5ACTX9]
          Length = 375

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 161/384 (41%), Gaps = 46/384 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             +ID  AL  N+ ++  ++G A   AV+K  AYG G E+ AP L  AG +   VT   E
Sbjct: 4   WTEIDAAALTANYKAIQRVAG-AEVLAVIKARAYGHGAERCAPILVRAGARWLGVTCASE 62

Query: 68  GVKLRLY----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           G ++R        +A I V+ G  P     I   +LIPVI +   +   +     G+   
Sbjct: 63  GQQVRAALDHAGLEADILVMSGSLPKDVPAIVSAHLIPVIWTTDHIDLLA-----GIGCR 117

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VDTG  R G+   + L       +    +L  + +H   ++  +S++   Q   F 
Sbjct: 118 VHVEVDTGMGRQGVRPGQDLATLLARISAAGLRLDGLFTHFCSSEVANSNLTLRQRALFE 177

Query: 184 TLISH-----YKGIEASLASSSG---------------ILLGPNYHFQLTRPGISLYGGT 223
             +               A+SS                 L        + R G++LYG  
Sbjct: 178 AAVQQTVTAGLTPAWLHAANSSAVDNETPEPSSGDWLTTLAAAAGSQTMVRTGLALYGYC 237

Query: 224 DKINK------SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
             I        S  +Q V+T +ARI+ +R    G+ V Y           +A+  +GYAD
Sbjct: 238 LPIEGGALHHLSPALQPVLTWKARILAVRDLAPGDTVGYNATFIAGPAMKVALLPVGYAD 297

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           G    LS             G   ++G+  PILG+I+M++T+ D+T   +   GD   + 
Sbjct: 298 GLRRELS----------HPHGWVMVQGHPAPILGRISMNLTVVDVTAIPAASAGDEATLL 347

Query: 338 GPDIKLDDVALASGTTNYDLLVRI 361
           GP I  +D A  + T +Y++L  I
Sbjct: 348 GPGITAEDHARLARTISYEILCGI 371


>gi|118472399|ref|YP_885954.1| alanine racemase [Mycobacterium smegmatis str. MC2 155]
 gi|3913029|sp|P94967|ALR_MYCSM RecName: Full=Alanine racemase
 gi|166969419|sp|A0QSR6|ALR_MYCS2 RecName: Full=Alanine racemase
 gi|1813550|gb|AAC45589.1| D-alanine racemase [Mycobacterium smegmatis]
 gi|118173686|gb|ABK74582.1| alanine racemase [Mycobacterium smegmatis str. MC2 155]
          Length = 389

 Score =  308 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 101/374 (27%), Positives = 164/374 (43%), Gaps = 26/374 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A+ +N   +  L+G+A   AVVK +AYG G   +A     AG     V ++ E + 
Sbjct: 20  IDLGAIDHNVRVLRELAGSADVMAVVKADAYGHGALPVARTALAAGAAALGVATIPEALA 79

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVD 129
           LR     A +                 ++   +SS  QL    +     G +    ++VD
Sbjct: 80  LREGGITAPVLAWLHPPGTDFAPAIAADVEVAVSSRRQLEQVTAAAAEVGRTATVTVKVD 139

Query: 130 TGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG +R G+      E LD    +      ++  ++SHL   DDP +  N +Q +R   + 
Sbjct: 140 TGLSRNGVGAADYPEVLDVLRRAQADGAIRVRGLMSHLVHGDDPENPFNGLQGQRLADMR 199

Query: 187 --SHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEA 240
             +   G++   A L +S   +  P+  F++ RPGISLYG +    +    ++  +T + 
Sbjct: 200 VYAREHGVDYEVAHLCNSPAAMTRPDLAFEMVRPGISLYGLSPIPERGDMGLRPAMTLKC 259

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            + L+R   AG+ VSYG +    RD+ + +  IGYADG    LSG               
Sbjct: 260 PVALVRSVHAGDGVSYGHRWVADRDTTLGLLPIGYADGVYRALSGRID-----------V 308

Query: 301 FIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
            IKG     +G+I MD  + D+   +  + VGD   +FGP    +    D A    T +Y
Sbjct: 309 LIKGRRRRAVGRICMDQFVVDLGPDADDVAVGDDAILFGPGANGEPTAQDWAELLDTIHY 368

Query: 356 DLLVRIGTRYAKFY 369
           +++     R  + Y
Sbjct: 369 EVVTSPRGRVTRTY 382


>gi|225156581|ref|ZP_03724914.1| Alanine racemase [Opitutaceae bacterium TAV2]
 gi|224802813|gb|EEG21062.1| Alanine racemase [Opitutaceae bacterium TAV2]
          Length = 375

 Score =  308 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 99/378 (26%), Positives = 163/378 (43%), Gaps = 28/378 (7%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             +IDL AL+ N   + A L  + R  AVVK +AYG G  + A  L +AG   F V S+ 
Sbjct: 4   WAEIDLAALERNLRLIRASLPAHIRYVAVVKADAYGHGLPQTAARLMHAGADLFAVASIA 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125
           E   LR   P   +  L  + P +++ I D N+   +S+  +   F +   + G      
Sbjct: 64  EAAALREIGPDWPVLSLGPVLPEEDRHIADYNVAVTVSTTDEVARFSAAARAAGRPIAVH 123

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L++DTG  RLG+  ++A     N  +    +L  + +H +   D  +   + Q  RF   
Sbjct: 124 LKIDTGMGRLGVWHEQAETIYQNLRDAPGLRLEGVFTHFSS-PDEDAAFTAEQRRRFVAA 182

Query: 186 ISHYKGIEA-----SLASSSGILLGPNYH-FQLTRPGISLYGGTDKIN---KSHPMQTVV 236
           I   +G++         +S+G+        F   R G+  +G              + V 
Sbjct: 183 IGRCRGLDPAKIFVHADNSAGLETIETAGPFNAARIGLLQFGVLPHAGSLLAQVRTEPVF 242

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +   RI L++   AG  +SYG    L+RDS +A+   GY DG P   S            
Sbjct: 243 SFRTRIGLVKPLPAGTDISYGRTHTLSRDSRVAILTGGYGDGIPRHASNR---------- 292

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALASG 351
                ++G   P+LG++TMD T+ D+TD       G+ + + G     +I L + +    
Sbjct: 293 -ACVLVRGRRCPVLGRVTMDQTIIDVTDLPADTGPGEEVVLVGRQNGAEIALTEFSRWGD 351

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T  ++ L  +  R A+ Y
Sbjct: 352 TIPWETLCSVTKRVARIY 369


>gi|88803788|ref|ZP_01119311.1| alanine racemase [Polaribacter irgensii 23-P]
 gi|88780316|gb|EAR11498.1| alanine racemase [Polaribacter irgensii 23-P]
          Length = 366

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 102/376 (27%), Positives = 154/376 (40%), Gaps = 23/376 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M+++  + L+ID  AL +N       L    +  AVVK   YG    ++A  L    V  
Sbjct: 1   MNTHVTI-LEIDGKALVHNLDYFKEKLQTTTKILAVVKAFGYGSDGAQVAKFL-EHKVDY 58

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           F V    EGV LR    Q  I VL+  H    ++I D  L P + +      + K+    
Sbjct: 59  FAVAYTHEGVALREAGVQTPILVLHP-HLQNLEVIIDFKLEPGLYNFKIFNAFLKVAKEK 117

Query: 120 VSH--PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176
            S   P  L+ +TG NRLG S  E              ++  + SHLA ++D       +
Sbjct: 118 GSAQYPIHLKFNTGLNRLGFSATEIPTILTQLHASTAVKVQSLFSHLAASEDLEEKAFTT 177

Query: 177 VQLERFRTLISH-YKGIEA----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            Q+E+F  +    + G++      L ++SG++  P   F + R GI LYG  +   ++  
Sbjct: 178 GQIEQFTAIKEELFAGLKYTPMLHLLNTSGVVNYPKAQFDMVRIGIGLYGFGNDAKETVH 237

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++     ++ I  I    AGE V Y         +  A   IG+ADG    L        
Sbjct: 238 LKNTHNLKSIISQIHTIAAGETVGYNRAFAAKATTKTATIPIGHADGLSRRLGNT----- 292

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
                 G   I     PI+G + MDM M D+T       GD + +F     +  +A  SG
Sbjct: 293 -----KGFVRINQQNAPIIGNVCMDMIMVDVTHI-DCSEGDEVIVFNTQEMIQHIATTSG 346

Query: 352 TTNYDLLVRIGTRYAK 367
           T  Y+ L  I  R  K
Sbjct: 347 TIVYETLTAISPRVHK 362


>gi|225012399|ref|ZP_03702835.1| alanine racemase [Flavobacteria bacterium MS024-2A]
 gi|225003376|gb|EEG41350.1| alanine racemase [Flavobacteria bacterium MS024-2A]
          Length = 362

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 157/369 (42%), Gaps = 22/369 (5%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L + L+ + +N++ +   ++   +   VVK NAYG      A  L   GV    V   EE
Sbjct: 4   LTLSLSNIDHNYNCIREQINATTQIIGVVKANAYGSSSIHFASRLVELGVDYLAVAYTEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPYA 125
           G +LR    +  I V Y         + D  L P + +   L  + K  L      +P  
Sbjct: 64  GQQLRSQGVKIPIMVFYP-QLDALDTLLDACLEPCLYNETILEGFKKILLEKKISHYPVH 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERFRT 184
           ++ +TG NRLG +  ++ D+          QL  + SHLA ++          Q+E F  
Sbjct: 123 IKYNTGLNRLGFTPDQS-DWVLEQMKNNCFQLESVYSHLAASEAKRPSALCKSQIELFEI 181

Query: 185 LISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
           L   +  +     +  L +SSG+   P + + + R GI+L+G  +  +    ++ +   E
Sbjct: 182 LKIKHSSVSNQPPKFHLLNSSGVFNYPEHQYDMVRCGIALHGFANHPDWDAHLKPICVLE 241

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           + I  I +   G  V Y    +  +++ IA   +G+ADG                   G 
Sbjct: 242 SSITQIHQVKKGNFVGYDHGWQAPQNTQIATLPLGHADGIGRHFG----------HHKGS 291

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
             I G   PI+G + MD+ M D+T S+  E GD ++ FG        AL   + +Y+L+ 
Sbjct: 292 VMINGKKAPIVGNVCMDLLMVDVT-SIDCEEGDKVKFFGELNTASTFALQGNSISYELIT 350

Query: 360 RIGTRYAKF 368
            +G+R  + 
Sbjct: 351 GLGSRIKRI 359


>gi|300932943|ref|ZP_07148199.1| hypothetical protein CresD4_02686 [Corynebacterium resistens DSM
           45100]
          Length = 559

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 98/389 (25%), Positives = 163/389 (41%), Gaps = 35/389 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            +    + IDL+A+++N       + +A   AVVK +AY  G   +A A   +G     V
Sbjct: 10  EHALAEVIIDLSAVRSNVSLFADAAPSAEVMAVVKADAYNHGAFSVARACLESGATQLGV 69

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---- 118
            ++ E + LR     A I     I           ++   + S+       +L+      
Sbjct: 70  ATIGEALSLRTAGITAPITAWMWIPGEDLSRAIQQDITIGVPSLAHAEALVELVDTLEQS 129

Query: 119 ---GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHL-ACADDPSSH 173
                    +L  DTG +R G++  +                +  ++SHL +  D   + 
Sbjct: 130 DSNSTPIAISLMADTGLSRSGITPDQWATVVELIAKYSASFDVRGVMSHLASADDSARAA 189

Query: 174 VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
              VQ  RF+  I   +  GI+     +A++   L  P+ H Q+ RPG+ +YG    +  
Sbjct: 190 FTDVQNRRFQRAIEICREHGIDPRTNHIANTPAALTRPDLHHQMVRPGVGIYGIDPVVGG 249

Query: 229 SHPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
           S       +  +T  A++I  +   AGE VSYGG    TRD+  AV A GYADG P   S
Sbjct: 250 SGGNAGQLRPAITFRAKVITTKTIRAGESVSYGGTWTATRDTRTAVVAAGYADGVPRAAS 309

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL---SIEVGDYIQIFGP-D 340
           G                I G + P +G++ MD  + ++ DS     ++ GD+  IFG   
Sbjct: 310 GKF-----------HVGIGGKLYPQIGRVCMDQIVVNLGDSEEPTDVKPGDWATIFGEGG 358

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           I   ++A A+ T +Y++L     R  + +
Sbjct: 359 ISASELAAAAETIDYEILTM--PRGPRVW 385


>gi|163781726|ref|ZP_02176726.1| alanine racemase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882946|gb|EDP76450.1| alanine racemase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 348

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 100/361 (27%), Positives = 171/361 (47%), Gaps = 33/361 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67
           L+I  +A++ N   +    G  +  AV+K +AYG+G + +AP L     V+ F V  VEE
Sbjct: 16  LRIKRSAVEENVRELFRF-GGKKLIAVIKSDAYGIGVKYVAPILRELPEVESFAVACVEE 74

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           GV LR    +  + +L GI P + + + +  L PV+S +  L              + ++
Sbjct: 75  GVLLREMGIKREVLILGGILPEELEAVKEYGLTPVVSDIEHLKII-----GNEDIKFHVK 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  RLG   +   D           ++  I+SHL+         +  Q+ERF  ++ 
Sbjct: 130 YDTGMGRLGFVDEFVDD----------PRVVGIMSHLSTPA--DEEFSRKQIERFEAIVR 177

Query: 188 HY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            Y + I+  L SS+G++    Y     R G+++YG          ++  V+  AR++ ++
Sbjct: 178 RYSRKIKVHLESSAGVIYRVPYTTH-IRVGLAIYGEKPLKEYPLRLRPAVSIRARVLSLK 236

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AG  +SYG      R+  I V A GYADG   +LS             G    +G  
Sbjct: 237 TLPAGHPISYGRTFVTEREMRIGVIAFGYADGLMKSLSNR-----------GYLLYEGNK 285

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +PI+G ITMDMT+ D+  + ++ VGD++ +   +    ++A  +GT  Y+L+  + +R  
Sbjct: 286 LPIVGNITMDMTIVDVG-TANVRVGDWVTVVSEERTFGELAREAGTIPYELMCNVSSRVK 344

Query: 367 K 367
           +
Sbjct: 345 R 345


>gi|291456246|ref|ZP_06595636.1| alanine racemase [Bifidobacterium breve DSM 20213]
 gi|291381523|gb|EFE89041.1| alanine racemase [Bifidobacterium breve DSM 20213]
          Length = 452

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 96/408 (23%), Positives = 164/408 (40%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  ++L  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVNLKTMRDNMAHLVSVVGGPNSGTAVMGVVKADAYGHGLLPSALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF-Y 112
                    E + LR       R  +L  ++ G E     +   ++   + S+P +    
Sbjct: 84  TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G      ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFAAALAELVPLAKEGVLHIVGQWSHLAVADS 203

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+E F+   +  +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVASTDRQIETFKDFTARMEKAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G          +   +   +  +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEQFVEPTADDWARAADTISYEVFTCLRNRIPRLY 431


>gi|313609784|gb|EFR85237.1| alanine racemase [Listeria monocytogenes FSL F2-208]
          Length = 314

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 131/330 (39%), Gaps = 30/330 (9%)

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLT 110
              AG + F V  ++E + LR    Q   I VL         +    ++   +     L 
Sbjct: 1   AKEAGAKGFCVAILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLE 60

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
                 +        L+VD+G  RLG+ +++EA        +    QL  I +H A AD 
Sbjct: 61  EL----TLEAPLRIHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQ 116

Query: 170 PSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
             +     QL +F+T+++  K        A+S+  LL P   F   R GIS+YG T    
Sbjct: 117 LETSYFEQQLTKFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTE 176

Query: 228 ----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                   ++  ++    ++ +++   G+ VSYG     T    +A   IGYADG     
Sbjct: 177 IKTSLPFELKPALSLYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHY 236

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340
           SG                + G + PI+G++ MD T+  +      + G  + I G D   
Sbjct: 237 SGF------------HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGN 282

Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            I  DD A    T NY++   +  R  + Y
Sbjct: 283 TITADDAAQYLDTINYEVTCLLNERIPRKY 312


>gi|283851833|ref|ZP_06369110.1| alanine racemase [Desulfovibrio sp. FW1012B]
 gi|283572749|gb|EFC20732.1| alanine racemase [Desulfovibrio sp. FW1012B]
          Length = 373

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 172/385 (44%), Gaps = 32/385 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++ +LR ++ L  +  N+  +  L G  R  AV+K +AYG G  + A  L  AG   F V
Sbjct: 4   AHNYLRTRVRLDHIAANYKRLAGLGG--RVLAVIKADAYGHGLLETARVLTGAGCDGFAV 61

Query: 63  TSVEEGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGV 120
            SV EG  LR   P+A I  +L  + P  + +I   ++IP I    QL   + +     V
Sbjct: 62  GSVAEGAALRAAIPRAAIVSLLGPVLPEDDAMILGHSIIPFIHDFGQLERLAGRAARKRV 121

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQL 179
               AL+ DTG  RLG    +  +      +    +++++ SHLA ADDP++    + Q 
Sbjct: 122 KARVALKFDTGMARLGFVEADVPELLKRLEDMPAIEVAMVGSHLATADDPAAFAFVAEQG 181

Query: 180 ERFRTLISHYK----GIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKS----- 229
           E F  + +  +      E SL +S+GI+     + F+  R GI+LYG    +        
Sbjct: 182 EGFGRICAALRRAGLAFEGSLCNSAGIMAHADRFGFETRRAGIALYGVNPFLGTDRETLG 241

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +   +    RI+ +    AG  VSYG      RD  +AV A GYAD Y   LS     
Sbjct: 242 QGLVAAMETVTRIVSVHDVAAGRSVSYGRTFTAERDMRVAVVAAGYADAYSRGLSN---- 297

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   + G  VPI+G++ M +T  D+T       GD I + G      +  +D
Sbjct: 298 -------AGAMCLAGKRVPIVGRVCMQLTAVDVTGIA-CAPGDVIHLLGGQGPEAVTAND 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           VA   GT  Y++L   G    + Y 
Sbjct: 350 VAGWWGTIPYEVLCLFGL-NPREYV 373


>gi|18460981|gb|AAK53980.1| VanTc-2 [Enterococcus casseliflavus]
          Length = 706

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 96/364 (26%), Positives = 156/364 (42%), Gaps = 31/364 (8%)

Query: 15  ALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 356 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVAGTLERAGVDFFAVATLEEAIELRR 415

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L        K +   +LI  I S         L    +     L VDTG +
Sbjct: 416 AGIKSRLLILGYTSAQHAKEMKHYSLIQTIVSEAHG---HALAQTSIPIECHLAVDTGMH 472

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D   +        Q+  F  L++   
Sbjct: 473 RLGVAPD--LEAVTGLYALPSLKITRIFSHLGSSDQLDTASILRTQAQITCFDDLLAGLS 530

Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEAR 241
                     L SS GIL  P  H+   RPGI L G     N+    +     ++T +A 
Sbjct: 531 ARNIVYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 590

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +   AGE + YG      R + I + +IGY DG P  LS    + S          
Sbjct: 591 LVDKKTVAAGEAIGYGLGTIFDRPATIGIVSIGYCDGVPRALSNQGFQLSY--------- 641

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            +G ++P +G + MDM + D+TD   + V   +++          A  + T   +L+ R+
Sbjct: 642 -QGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTT---ADQAQTITNELISRL 697

Query: 362 GTRY 365
           G+R 
Sbjct: 698 GSRI 701


>gi|257452886|ref|ZP_05618185.1| alanine racemase, biosynthetic [Fusobacterium sp. 3_1_5R]
 gi|257466749|ref|ZP_05631060.1| alanine racemase, biosynthetic [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917898|ref|ZP_07914138.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059428|ref|ZP_07923913.1| alanine racemase [Fusobacterium sp. 3_1_5R]
 gi|313685104|gb|EFS21939.1| alanine racemase [Fusobacterium sp. 3_1_5R]
 gi|313691773|gb|EFS28608.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 354

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 154/371 (41%), Gaps = 26/371 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   L++N   +   +       V+K NAYGLG   +A  L   G+  F V S+
Sbjct: 2   RAWVEIDTENLRHNIREIQKRAEGFGVWGVIKANAYGLGVLPVAKILAEEGIHYFAVASL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE  ++R       I +L  +   +       +    +S   +L + +K           
Sbjct: 62  EEAKEVRNANITGEILILGSLFHDEILEAESLDFHINVSCREELEWIAK---NAPKTKIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNSVQLERF 182
           L++DTG  RLG S QE ++    +    L  ++ + SH + AD  S         Q+ERF
Sbjct: 119 LKIDTGMTRLGFSYQEGMEVIEFAKKLSL-NITGVFSHFSDADGNSQEAKEYTQKQIERF 177

Query: 183 RTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
               +        + +S  ++         + R GI LYG           + VVT + +
Sbjct: 178 LPYATREDIPYRHIFNSGALIQYTDQKIGNMVRAGICLYGILGSTPIPS-FKNVVTLKTK 236

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +       VSYG   KL +        IGYADG    L+            GGK  
Sbjct: 237 VLFKKTVTEETYVSYGRLCKLEKGETYVTLPIGYADGVKKYLAN-----------GGKVE 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPD-IKLDDVALASGTTNYDLL 358
           I G   PI+G I MDM M  I ++L   IE+G  + +F  D I+ ++++    T  +D+ 
Sbjct: 286 ILGEACPIIGAICMDMMMVKIPENLVNKIEIGTEVSVFNNDIIRRNNISE---TCTWDMF 342

Query: 359 VRIGTRYAKFY 369
             +G R  + Y
Sbjct: 343 TGLGRRVQRIY 353


>gi|304319746|ref|YP_003853389.1| alanine racemase region protein [Parvularcula bermudensis HTCC2503]
 gi|303298649|gb|ADM08248.1| alanine racemase region protein [Parvularcula bermudensis HTCC2503]
          Length = 382

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 178/374 (47%), Gaps = 30/374 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVE 66
           L +DL AL  N+  +   +G     A VVK NAYGLG   IA  LY   G + FF  +  
Sbjct: 10  LTVDLGALGRNYDELKRRTGGTSAVAPVVKANAYGLGMHAIARTLYREKGARLFFTATCR 69

Query: 67  EGVKL----RLYTPQAR--IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           E + L    + +   A   ++VL G   G   +      +P++S    +  +      G 
Sbjct: 70  EALALLVDGQRFFDDAPPRVYVLNG-FDGDRALQEKVGYLPILSDWQDVGDWVA----GG 124

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             P  + VD G NRLG+S Q+A     ++       + LI+ HL+ + DP++  N +Q E
Sbjct: 125 GGPCGISVDIGMNRLGMSFQDAGGLPQDTRLNP-DDVQLIMMHLSHSGDPTAPENELQAE 183

Query: 181 RF----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +F      L   Y   + SL++S GILLG     Q+ R G +LYGG         +  V 
Sbjct: 184 KFFTSGMMLARLYPKAQFSLSNSGGILLGLAPEQQIVRAGYALYGGAPNGLPGQGLDQVT 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T EA ++ +R   +GE V Y G  +  R + +AV   GYADG    LS            
Sbjct: 244 TFEASVLQVRDIGSGESVGYNGTWRAERPTRLAVLGAGYADGIQRALSNR---------- 293

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDIKLDDVALASGTTNY 355
            G  ++ G + PI G ++MD+   DITD+   +  GD  +I+G  I LD VA  +GT  Y
Sbjct: 294 -GAVWLGGGLCPIRGAVSMDLVTVDITDAPSPVTRGDKAEIWGAQIDLDLVARQAGTIGY 352

Query: 356 DLLVRIGTRYAKFY 369
           DLL  +G+R  + Y
Sbjct: 353 DLLTGVGSRVERIY 366


>gi|20140854|sp|Q9KHL7|VANTG_ENTFA RecName: Full=Amino-acid racemase; AltName: Full=Vancomycin G-type
           resistance protein VanT
 gi|7960293|gb|AAF71283.1|AF253562_7 racemase [Enterococcus faecalis]
          Length = 711

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 102/374 (27%), Positives = 169/374 (45%), Gaps = 32/374 (8%)

Query: 9   LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I+L  L++N +++  A+S      AVVK  AYG G  ++       GV    V +++E
Sbjct: 347 LEINLNNLEHNVNTLQKAMSPKCELMAVVKAEAYGHGMYEVTTYFEPIGVFYLAVATIDE 406

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G++LR Y   + I +L    P + K +    L   +       +   L   G      ++
Sbjct: 407 GIRLRKYGIFSEILILGYTSPSRAKELCKFELTQTLID---YRYLLLLNKQGYDIKAHIK 463

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLERFRT 184
           +DTG +RLG S ++  D    +F  K  +++ I +HL  AD   +      +  +  F  
Sbjct: 464 IDTGMHRLGFSTED-KDKILAAFFLKHIKVAGIFTHLCAADSLEEKEVAFTNKPIGSFYK 522

Query: 185 LISHYK--GIEASLAS---SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT-- 237
           ++   K  G+     +   S G+    +++  + + G++LYG     N    ++T +   
Sbjct: 523 VLDWPKSSGLNIPKVNIQTSYGLWNIQSWNV-IYQSGVALYGVLRSTNDKTKLETDLRAC 581

Query: 238 --AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
              +A+++LIRK   G  V Y      TRDSLIA+  IGYADG+P  LS           
Sbjct: 582 SFLKAKVVLIRKIKQGGSVGYSRAFTATRDSLIAILPIGYADGFPRNLS----------C 631

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
                 I G   PI+GKI MD    D+TD  +++ G    + G D    I    VA ++ 
Sbjct: 632 GNSYVLIGGRQAPIVGKICMDQLAVDVTDIPNVKTGSIATLIGKDGKEEITAPMVAESAE 691

Query: 352 TTNYDLLVRIGTRY 365
           +   +LL R+  R 
Sbjct: 692 SITNELLSRMEHRL 705


>gi|227431451|ref|ZP_03913500.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352817|gb|EEJ42994.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 370

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 150/375 (40%), Gaps = 25/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              RL++  +A+++N  ++  +SG  +    VK NAYG G   +A A    G+    V  
Sbjct: 7   RPTRLEVSKSAVEHNITTVKNVSGADKVFLTVKSNAYGFGLIPMAQAAVAGGIYGLGVAV 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E + LR     A I +L        +++   +++  + S+  L      ++     P 
Sbjct: 67  LDEAIALRHERITAPILILGISQVKYVELMAVQHIMATVVSLDWLEKAEHQLTGEQRLPV 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLERF 182
            L +DTG  R+G   +E L            +     + +H A +D   +    +QL R+
Sbjct: 127 TLGIDTGMGRIGFRDRETLAKAIQFVLDHADKFEYVGLSTHFAESDSSDTRYFQMQLTRW 186

Query: 183 RTLISHYKGIE-ASLASSSGILLG-PNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
             L       +   +A+S   +        ++ R G  LYG      ++     ++ V+ 
Sbjct: 187 HQLTDDLPKPKYYHVANSGAAMYHAEEIPHEVVRVGTVLYGIEPSRGELADGRNLKPVMA 246

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +  +++  AGE +SY  Q   T++  I    IGY DG+   L G            
Sbjct: 247 LRSEVNFVKRLPAGESISYSHQYTTTQNEWIGTVPIGYGDGWLRKLMGF----------- 295

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            K  I G   PI+G++ MD  M  +        G  +   G D      ++DVA  +G  
Sbjct: 296 -KVIIDGQYAPIVGQVAMDQLMIRLPREYP--EGTTVTFIGQDGDLENTIEDVAQFAGLA 352

Query: 354 NYDLLVRIGTRYAKF 368
            +++   +  R  + 
Sbjct: 353 PWEITTGLQDRIHRI 367


>gi|226365649|ref|YP_002783432.1| alanine racemase [Rhodococcus opacus B4]
 gi|226244139|dbj|BAH54487.1| alanine racemase [Rhodococcus opacus B4]
          Length = 400

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 157/375 (41%), Gaps = 26/375 (6%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+ +N   +   +  A   AVVK + Y  G   +A A   AG  +  VT+V E + 
Sbjct: 32  VDLDAIAHNVRILRDSARGAAMMAVVKADGYNHGAVAVARAALAAGASELGVTTVSEALT 91

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYALQVD 129
           LR     A +                 ++   +SS        +     G      ++VD
Sbjct: 92  LRRAGIDAPVLAWLHTVDADFAPAIAADVELGVSSPRHLAAVVAAARRVGTPAIVTMKVD 151

Query: 130 TGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG NR G++  E          +  +   +L  I SHLA AD+P       Q +R    I
Sbjct: 152 TGLNRNGVAPDELAQVLVDLARAQAEGSVRLRGIFSHLAHADEPHHAWIDSQRDRLVDAI 211

Query: 187 SHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEA 240
           +  K          L++S+  L  P+  F + RPGI++YG +         ++  +T  +
Sbjct: 212 ADAKRHGLVPEVVHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPELGQFGLRPAMTLRS 271

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+ L++K  AGE VSYG Q    RD+ +A+  +GYADG P +LSG             + 
Sbjct: 272 RVALVKKVAAGEGVSYGHQWVAPRDTTVALLPLGYADGLPRSLSGRF-----------EV 320

Query: 301 FIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
            +     P +G++ MD  + D+  D   +  GD    FG     +    + A    T +Y
Sbjct: 321 QLGAERRPGIGRVCMDQVVVDLGPDGGGVREGDTAVFFGNGDLGEPIAQEWADKLDTIHY 380

Query: 356 DLLVRIGTRYAKFYT 370
           +++  +  R  + Y 
Sbjct: 381 EVVTGVRGRTVRTYV 395


>gi|18476140|gb|AAK58491.1| serine racemase VanTc3 [Enterococcus casseliflavus]
          Length = 700

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 96/364 (26%), Positives = 157/364 (43%), Gaps = 31/364 (8%)

Query: 15  ALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           AL +N   +  L     +  AVVK +AYG   + +A  L  AGV  F V ++EE ++LR 
Sbjct: 350 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDFFAVATLEEAIELRR 409

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              ++R+ +L      + K +   +LI  I S         L    +     L VDTG +
Sbjct: 410 AGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAHG---HALAQTSIPIECHLAVDTGMH 466

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190
           RLG++    L+     +     +++ I SHL  +D   +        Q+  F  L++   
Sbjct: 467 RLGVAPD--LETVTGLYALPSLKITRIFSHLGSSDQLDTASILRTQAQITCFDDLLAGLS 524

Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEAR 241
                     L SS GIL  P  H+   RPGI L G     N+    +     ++T +A 
Sbjct: 525 ARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 584

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  +   AGE + YG      R + I + +IGY DG P  LS    + S          
Sbjct: 585 LVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQGFQLSY--------- 635

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
            +G ++P +G + MDM + D+TD   + V   +++          A  + T   +L+ R+
Sbjct: 636 -QGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTT---AYQAQTITNELISRL 691

Query: 362 GTRY 365
           G+R 
Sbjct: 692 GSRI 695


>gi|326692928|ref|ZP_08229933.1| alanine racemase [Leuconostoc argentinum KCTC 3773]
          Length = 370

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 154/375 (41%), Gaps = 25/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              +++I   ALKNN   +   SG  +    VK NAYGLG    + A    GV    V  
Sbjct: 7   RPTQIEISQKALKNNVAVVKQTSGADKIFLAVKSNAYGLGLIPTSKAAIAGGVYGLAVAI 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E + LR     A I +L        +++   +++ ++ S+  L   +  +S       
Sbjct: 67  IDEALALRHERLTAPILILGISPAQYAELMAVQHIMAMVVSLDWLKEAATYLSGEQRLHV 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTHN--SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           +L VDTG  R+G   + AL         +  L     + +H A +D  ++    +QL R+
Sbjct: 127 SLGVDTGMGRIGFRDRAALAEAIAYVQAHHDLFDYVGLATHFAESDSANTDYFEMQLARW 186

Query: 183 RTLISHYKGIE-ASLASSSGILLG-PNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237
             L       E   +A+S   +         + R G  LYG      ++   H +Q V+ 
Sbjct: 187 HELTDGLPEPEYYHVANSGAAMYHADEVPHDVIRVGTVLYGVEPSRGELADGHELQPVMA 246

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + I  +++  AGE +SY  +   T D  I    IGY DG+   L+G +          
Sbjct: 247 LRSEINFVKQLPAGEGISYSHKYTTTGDEWIGTVPIGYGDGWLRKLTGFN---------- 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
               + G   PI+G+I MD  M  +     +  G  + + G D      L+DVA  +G  
Sbjct: 297 --VIVDGQYAPIVGQIAMDQMMIRLPHEYPV--GTKVTLIGRDGGLENTLEDVAQYAGLA 352

Query: 354 NYDLLVRIGTRYAKF 368
            ++++  +  R  + 
Sbjct: 353 PWEIMTGMQDRLHRV 367


>gi|116619014|ref|YP_819385.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097861|gb|ABJ63012.1| Alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 370

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 154/377 (40%), Gaps = 29/377 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              RL++  +A+++N  ++  +SG  +    VK NAYG G   +A A    G+    V  
Sbjct: 7   RPTRLEVSKSAVEHNITTVKNVSGADKVFLTVKSNAYGFGLIPMAQAAVAGGIYGLGVAV 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E + LR     A I +L        +++   +++  + S+  L      ++     P 
Sbjct: 67  LDEAIALRHERITAPILILGISQVKYVELMAVQHIMATVVSLDWLEKAEHQLTGEQRLPV 126

Query: 125 ALQVDTGFNRLGLSLQE----ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            L +DTG  R+G   +E    A+ F  +  +K   +   + +H A +D   +     QL 
Sbjct: 127 TLGIDTGMGRIGFRDRETLSKAIQFVLDHADK--FEYVGLSTHFAESDSSDTRYFQKQLT 184

Query: 181 RFRTLISHYKGIE-ASLASSSGILLG-PNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235
           R+  L       +   +A+S   +        ++ R G  LYG      ++     ++ V
Sbjct: 185 RWHQLTDDLPKPKYYHVANSGAAMYHAEEVPHEVVRVGTVLYGIEPSRGELADGRNLKPV 244

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   + +  +++  AGE +SY  +   T++  I    IGY DG+   L G          
Sbjct: 245 MALRSEVNFVKRLPAGEGISYSHKYTTTQNEWIGTVPIGYGDGWLRKLMGF--------- 295

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              K  I G   PI+G++ MD  M  +        G  +   G D      ++DVA  +G
Sbjct: 296 ---KVIIDGQYAPIVGQVAMDQLMIRLPREYP--EGTTVTFIGQDGDLENTIEDVAQFAG 350

Query: 352 TTNYDLLVRIGTRYAKF 368
              +++   +  R  + 
Sbjct: 351 LAPWEITTGLQDRIHRI 367


>gi|90419483|ref|ZP_01227393.1| putative alanine racemase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336420|gb|EAS50161.1| putative alanine racemase [Aurantimonas manganoxydans SI85-9A1]
          Length = 384

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 143/382 (37%), Positives = 206/382 (53%), Gaps = 16/382 (4%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           HS     ++ID  AL  NW  + A +  ART A VK + YGLG  + A  L+ AG +DFF
Sbjct: 6   HSERMPVVEIDRAALAANWALLAARNPGARTGAAVKADGYGLGAAETARTLHAAGCRDFF 65

Query: 62  VTSVEEGVKLRLYTPQ----------ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF 111
           V   EEG  +R               ARIFVL G+ P    +  D  LIPV+S+   +  
Sbjct: 66  VAWAEEGRIVRAALDALTHPDDGTAPARIFVLQGLEPDSVSLHLDAGLIPVLSTPGDIAV 125

Query: 112 YSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
           +   L + G   P A+Q++TG +RLGL   +A      + + +L  L+L++SHLA AD+P
Sbjct: 126 WCNGLKAAGRRAPAAIQLETGMHRLGLDRADAEAAADLAASGEL-DLALVMSHLASADEP 184

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
            +  ++ Q  RF  L + + G+  SLA+S+ + LG  + F LTRPGI+LYGG        
Sbjct: 185 -TDQSARQQARFLELAALFPGVPRSLANSAAVFLGSEFGFDLTRPGIALYGGEAGPASRG 243

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++ V    A I+ IR A AGE   YG    LTRD+ IA   +GYADGY    SG     
Sbjct: 244 VLRPVARLTAAILQIRTANAGEAAGYGAAAPLTRDTRIATVGLGYADGYHRAASGAGVAV 303

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVAL 348
              V  G +  + G  VP+LG+++MD+T+ D+TD     +  GD  + FGP++ +D VA 
Sbjct: 304 R-DVRPGPQAVVAGQRVPVLGRVSMDLTLLDVTDVPDNALVPGDRAEFFGPNMSIDAVAN 362

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
           A+GT  Y+LL  +G R  + + 
Sbjct: 363 AAGTIAYELLTGLGPRVERRWV 384


>gi|257069444|ref|YP_003155699.1| alanine racemase [Brachybacterium faecium DSM 4810]
 gi|256560262|gb|ACU86109.1| alanine racemase [Brachybacterium faecium DSM 4810]
          Length = 390

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 145/377 (38%), Gaps = 29/377 (7%)

Query: 11  IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID +A+  N  +M  L        AVVK + YG G    A A    G     V      +
Sbjct: 19  IDPSAITENTRAMGTLLEEQTALMAVVKADGYGHGMLTAARAAIEGGATWLGVAHPASAL 78

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIF----DTNLIPVISSVPQLTFYSKLMSCGVSHP-Y 124
            L      A+I       P   +I+      + +   + S   L   S+           
Sbjct: 79  ALARADLDAQILTWL-FEPHTARIVLPEVLASGVDVSVGSPEMLALVSEAARQADRRARV 137

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++DTG  R G+   +  +           Q +   +HL  ADDPS      Q+E F +
Sbjct: 138 HLKIDTGMGRNGVLPWQIREMGATLREDDFLQATGAWTHLTSADDPSDPATDQQVELFDS 197

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
             + +           +A+S+  L  P+ H  L RPGI+LYG    +    P++  +T  
Sbjct: 198 ACAAFADEVGPIPLQHIANSAATLTRPDLHRDLVRPGIALYGY-PPVPTDVPLRPAMTLT 256

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           +RI L+++   G  + YG  +  TR + + +  IGYADG     S        +      
Sbjct: 257 SRIALVKEVPEGHSIGYGRMRTTTRPTRLGLVPIGYADGLHRAGSDRCDVLVRTAS---- 312

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI---------KLDDVALAS 350
                   P +G+I+MD  + D+        GD + +FG              DD A A+
Sbjct: 313 ---GDRRAPQVGRISMDQIVIDLGADSEARPGDEVFLFGDAGGDPGGPSASTADDWAAAA 369

Query: 351 GTTNYDLLVRIGTRYAK 367
           GT  Y++L  +  R  +
Sbjct: 370 GTIPYEVLTSVSGRVTR 386


>gi|269955481|ref|YP_003325270.1| alanine racemase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304162|gb|ACZ29712.1| alanine racemase [Xylanimonas cellulosilytica DSM 15894]
          Length = 441

 Score =  305 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 102/399 (25%), Positives = 167/399 (41%), Gaps = 34/399 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R  +DL A+++N  ++ A + ++   AVVK +AYG G    A A    G     V   
Sbjct: 12  PARAVVDLEAVRDNVRALRAHAPSSALMAVVKADAYGHGLVPTAWAALAGGATWLGVAQA 71

Query: 66  EEGVKLRLYTP---QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVS 121
            E V LR        ARI             +   ++   +++   L    +   + G  
Sbjct: 72  AEAVALRAAGIGPGDARILTWLHSPGVDFDPLVAADVDVSVAAPWALDGVAAAARATGRV 131

Query: 122 HPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L+VDTG  R G++   L  A         +    +  + +HLA AD+P     + Q
Sbjct: 132 ARVHLKVDTGLGRNGITPADLPAAAARAAALVAEGAIHVVGVWTHLAYADEPGHPTIAAQ 191

Query: 179 LERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKS 229
                  +      GIE      A+S+  L  P  H+ L RPGIS+YG +         S
Sbjct: 192 RVVLDDAVRTVEAAGIEVELRHAANSAATLTAPALHYDLVRPGISVYGFSPVPGVATASS 251

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++  +T +AR+  ++   AG+ VSY  +   T+ + + V  +GYADG P   SG D  
Sbjct: 252 FGLRPAMTLQARLATVKNVEAGQGVSYAHRYVTTQATQLGVVPLGYADGIPRHASGGDDG 311

Query: 290 HSPSVFLGGKGFI---------KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
               V++GG              G +V + G++ MD  + D+    + + GD + +FG  
Sbjct: 312 PGGPVYVGGPAGAGIGPAGDGDGGRVVRVAGRVCMDQVVLDLGPYATEQPGDVVTLFGST 371

Query: 341 ---------IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
                       +D A A+GT +Y+++ RI  R  + Y 
Sbjct: 372 DGLAHSASVPSAEDWAAAAGTISYEIVTRIAPRIPRVYV 410


>gi|114769303|ref|ZP_01446929.1| alanine racemase [alpha proteobacterium HTCC2255]
 gi|114550220|gb|EAU53101.1| alanine racemase [alpha proteobacterium HTCC2255]
          Length = 351

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 128/363 (35%), Positives = 182/363 (50%), Gaps = 27/363 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           LKID  A+ NNW S++   + N  TAAV+K +AYGL  + IA  L    V+ FFV   EE
Sbjct: 11  LKIDTNAIYNNWQSLDKKSAKNVETAAVIKADAYGLSTKNIASYLAFKNVKTFFVAIAEE 70

Query: 68  GVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G+  R      A IFV  G       II + NLIP+++S  Q   Y +      +  + +
Sbjct: 71  GIGARKAVGNDADIFVFSGQMENDAAIIKEYNLIPLLNSADQ---YHQFQINSPNQKFGI 127

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+DTG NRLG+   E ++F  +S ++ +    LI+SHLACAD+P+   N  QL  F  L 
Sbjct: 128 QLDTGMNRLGM---EGIEF--SSLDENMSNACLIMSHLACADEPNHSQNLKQLRTFHHLT 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
              K I  SL+++ GILLGP YHF L RPGI LYGG            V+     +I  R
Sbjct: 183 DDLK-IRKSLSATGGILLGPEYHFDLCRPGIGLYGGLPYDTA----LPVIKLSIPVIQSR 237

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE V YGGQ +   D+ +A  + GYADG    +                 +     
Sbjct: 238 TVFAGETVGYGGQWRAKTDTRVATISAGYADGLIRAIGNGQLLL----------YHGDVG 287

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
            P++G+++MD+   DIT          + +      +D +A A+ T  Y++L  +G RYA
Sbjct: 288 CPLIGRVSMDLITVDITQLEDTPR--SLDLINKIQTVDIIANAANTIGYEILTSLGARYA 345

Query: 367 KFY 369
           + Y
Sbjct: 346 REY 348


>gi|120603074|ref|YP_967474.1| alanine racemase [Desulfovibrio vulgaris DP4]
 gi|254802362|sp|A1VF31|ALR_DESVV RecName: Full=Alanine racemase
 gi|120563303|gb|ABM29047.1| alanine racemase [Desulfovibrio vulgaris DP4]
          Length = 376

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 98/376 (26%), Positives = 164/376 (43%), Gaps = 29/376 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + + L ++  N+  +  ++   R   V+K +AYG G E +  AL   G ++  V +V EG
Sbjct: 10  VVVSLQSIIANYRRIRTVAQ--RPMPVIKSDAYGHGLEAVGMALEAEGARECAVGTVGEG 67

Query: 69  VKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            KLR     A I  +L  +     ++   + +IP +  +  L   +   +       AL+
Sbjct: 68  AKLRKAGFGADIVALLGALDREDAQLAASSGIIPTVLDIAGLERLAAQGTTERPVRVALK 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLI 186
            DTG  RLG +  +              +  + +SHLA ADDP  S     Q   F  ++
Sbjct: 128 FDTGMARLGFTEHDVSALCERLRTLPSVRPVMAVSHLAVADDPTQSAFTMAQGAAFARIM 187

Query: 187 SH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ-----TVVT 237
           +     +  I  SL++S+  L  P  H+ + RPGI+LYG       +           ++
Sbjct: 188 AGLRSNFPDIMGSLSNSAATLAHPQLHWDVQRPGIALYGSNPLRGTALARHGEGLLPAMS 247

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               ++ +    AG  +SYG     T+D+ +A+ A GYAD Y   LSG            
Sbjct: 248 VSVPVLQVHPLPAGRSISYGRTYTATKDATVAIIAAGYADNYSRALSGR----------- 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
           G     G  VP+LG++ M  T  D+TD   I  GD + + G      +  D++A   GT 
Sbjct: 297 GVAVAGGRRVPVLGRVCMQTTAIDVTDVPGIATGDRVWLLGGPGPATVSADELADLWGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++L  +G    + +
Sbjct: 357 SYEVLCLLGM-NPRRH 371


>gi|46579368|ref|YP_010176.1| alanine racemase [Desulfovibrio vulgaris str. Hildenborough]
 gi|81830473|sp|Q72DH4|ALR_DESVH RecName: Full=Alanine racemase
 gi|46448782|gb|AAS95435.1| alanine racemase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233193|gb|ADP86047.1| alanine racemase [Desulfovibrio vulgaris RCH1]
          Length = 376

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/376 (26%), Positives = 164/376 (43%), Gaps = 29/376 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + + L ++  N+  +  ++   R   V+K +AYG G E +  AL   G ++  V +V EG
Sbjct: 10  VVVSLQSIIANYRRIRTVAQ--RPMPVIKSDAYGHGLEAVGMALEAEGARECAVGTVGEG 67

Query: 69  VKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            KLR     A I  +L  +     ++   + +IP +  +  L   +   +       AL+
Sbjct: 68  AKLRKAGFGADIVALLGALDREDAQLAASSGIIPTVLDIAGLERLAAQGTPERPVRVALK 127

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLI 186
            DTG  RLG +  +              +  + +SHLA ADDP  S     Q   F  ++
Sbjct: 128 FDTGMARLGFTEHDVSALCERLRTLPSVRPVMAVSHLAVADDPTQSAFTMAQGAAFARIM 187

Query: 187 SH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ-----TVVT 237
           +     +  I  SL++S+  L  P  H+ + RPGI+LYG       +           ++
Sbjct: 188 AGLRSNFPDIMGSLSNSAATLAHPQLHWDVQRPGIALYGSNPLRGTALARHGEGLLPAMS 247

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
               ++ +    AG  +SYG     T+D+ +A+ A GYAD Y   LSG            
Sbjct: 248 VSVPVLQVHPLPAGRSISYGRTYTATKDATVAIIAAGYADNYSRALSGR----------- 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
           G     G  VP+LG++ M  T  D+TD   I  GD + + G      +  D++A   GT 
Sbjct: 297 GVAVAGGRRVPVLGRVCMQTTAIDVTDVPGIATGDRVWLLGGPGPATVSADELADLWGTI 356

Query: 354 NYDLLVRIGTRYAKFY 369
           +Y++L  +G    + +
Sbjct: 357 SYEVLCLLGM-NPRRH 371


>gi|15896574|ref|NP_349923.1| alanine racemase [Clostridium acetobutylicum ATCC 824]
 gi|20137413|sp|Q97DY9|ALR2_CLOAB RecName: Full=Alanine racemase 2
 gi|15026412|gb|AAK81263.1|AE007830_4 Alanine racemase [Clostridium acetobutylicum ATCC 824]
 gi|325510735|gb|ADZ22371.1| Alanine racemase [Clostridium acetobutylicum EA 2018]
          Length = 395

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 96/383 (25%), Positives = 160/383 (41%), Gaps = 36/383 (9%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E  + +I+L+ LK N+  +   L  N +  AV+K +AYG G   IA  L N     F V 
Sbjct: 27  EVNKAEINLSQLKRNFDIIQGFLKPNTKFMAVLKGDAYGHGIRPIAKELINLKCDVFGVV 86

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH- 122
            + E   LR    +  I +L  I P Q   +   N+IP++ S   +    +  S   +  
Sbjct: 87  RLIEAFTLRKAGIKTPIMLLAPISPSQAAWVIRYNIIPMVDSEEIVEALDQSASQNDTIV 146

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLER 181
              ++++TG NR G++ + A+ F      K L  Q+  + +H     D +      Q+E 
Sbjct: 147 KLHVKINTGLNRYGVNPENAVKFIREIHEKYLHVQVDGVYTHFQD-PDYNPDFTHKQIEC 205

Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQ 233
           F  +I        +      A+S+GI+  P  H+ + R G  L+G   +    N    ++
Sbjct: 206 FNNIIFQLQKQKLRPRIIHAANSTGIIRYPEAHYDMVRCGTLLFGLEHEQGQRNMPKGIK 265

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           T++  + RI+ +R   AGE   YG      +DS +A+ A GY DG               
Sbjct: 266 TLMELKGRIMKVRTIRAGEAGGYGSTFVAKKDSKVAIIAFGYGDGISRGWK--------- 316

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPD----IKLDDVAL 348
                +  + G  VP++    MD  M DI++    ++  D   I G      I   +   
Sbjct: 317 -----EVLVAGKRVPVVNYF-MDGLMVDISNIDETVKELDEAVIVGNQGDESITWLEACK 370

Query: 349 ASGTTNY--DLLVRIGTRYAKFY 369
           + G  +Y  + +  I  R  K Y
Sbjct: 371 SLG--SYVDEQIQCITERVPKKY 391


>gi|296392787|ref|YP_003657671.1| alanine racemase [Segniliparus rotundus DSM 44985]
 gi|296179934|gb|ADG96840.1| alanine racemase [Segniliparus rotundus DSM 44985]
          Length = 397

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 164/384 (42%), Gaps = 36/384 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++  +D  A+ +N   +   S  A+  AV+K NAYG G   +A     AG     V ++ 
Sbjct: 5   VQATVDHHAIAHNVRLLAQASAPAQVIAVLKANAYGHGAVPVARTALAAGAAQIGVATLA 64

Query: 67  EGVKLRLYTPQARIFV-LYGIHPGQE----KIIFDTNLIPVISSVPQLTF-YSKLMSCGV 120
           E  +LR    +A I   L+   P +          + +   +S+  Q+       +    
Sbjct: 65  EAFELRQGGIEAPIIAWLHAFDPDEAVAVFAEAIASGIELGVSTSSQVRAVAEAALRADQ 124

Query: 121 SHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
               A++VDTG NR G      ++A     N+      Q+  + SHLA AD P    N+ 
Sbjct: 125 LAVVAVKVDTGLNRGGFARGEWRKAFADLANAEAAGAVQVRGVFSHLANADRPEYRTNAE 184

Query: 178 QLERFRTLI-----SHYKGIEASLASSSGILLGPNYH------FQLTRPGISLYGGTDKI 226
           Q    R  +     +        LA+S  +L  P         F  TRPG+++YG +  +
Sbjct: 185 QARSLREAVSFARAAGLAPELVHLANSPAVLTRPKALVNELPVFNATRPGVAVYGLSPIM 244

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            +   +   +T  AR+ L ++  AG+ VSYG       D+ +A+  IGYADG    L+G 
Sbjct: 245 GRDFGLIPAMTLTARVGLTKRIHAGDGVSYGHDFVAASDTTLALLPIGYADGLQRALAGK 304

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DI 341
                       +  I G   P +G++ MD  + D+      +  GD   +FGP    + 
Sbjct: 305 F-----------EVSIGGRRYPGVGRVCMDQVLVDLGPGEPKVREGDTAVLFGPGSDGEQ 353

Query: 342 KLDDVALASGTTNYDLLVRIGTRY 365
             DD A A+GT NY+++ ++  R 
Sbjct: 354 TADDWARAAGTINYEIVTQLRGRV 377


>gi|262201658|ref|YP_003272866.1| alanine racemase [Gordonia bronchialis DSM 43247]
 gi|262085005|gb|ACY20973.1| alanine racemase [Gordonia bronchialis DSM 43247]
          Length = 381

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 167/382 (43%), Gaps = 26/382 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++  L   +DL A+ +N   +   +      AVVK +AYG G   +A A   AG  +  V
Sbjct: 2   TSAALTATVDLDAIAHNISVLRE-TSRTDVLAVVKADAYGHGAVPVARAALAAGAAELGV 60

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVS 121
             + EG+ LR     A I      +          +L   +SS  Q     +   S G +
Sbjct: 61  AVIGEGLALRAAGIDAHITTWLHTNSADFAAAIAADLDLALSSRRQLAAVVAAARSAGTT 120

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQ 178
              ++++DTG  R G++  E  DF  +      +   Q+  ++ HLA  D+P   +NS Q
Sbjct: 121 ATASVKLDTGLGRSGVAPDEWADFADDLAKAVAEGAVQVRALMCHLARGDEPDHPLNSQQ 180

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
             R     +    + A      +A+S   L  P+    L RPGI++YGG     +   + 
Sbjct: 181 AARLDDARADLVRVGAAPEIMHIANSPAALTRPDLARDLVRPGIAIYGGAPIPGRDFGLI 240

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +T  A++ L+++  AG+ VSYG      RD+ IAV   GYADG P   SG        
Sbjct: 241 PAMTLRAQVALVKRIAAGQGVSYGHTWVADRDTTIAVIPAGYADGVPRPASGRL------ 294

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVAL 348
                +  I   +V  +G+I MD  + D+      I  GD+ ++FG       +  D A 
Sbjct: 295 -----RIRIGDRVVDQVGRICMDQFVIDLGPEAGGIAEGDWAELFGTGADGGQRAQDWAD 349

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
           A GT +Y+++  IG R  + Y 
Sbjct: 350 AVGTIDYEIVSGIGARAVREYV 371


>gi|254492138|ref|ZP_05105313.1| alanine racemase [Methylophaga thiooxidans DMS010]
 gi|224462690|gb|EEF78964.1| alanine racemase [Methylophaga thiooxydans DMS010]
          Length = 334

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 155/339 (45%), Gaps = 20/339 (5%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
            +V+K +AYG G    A AL  +    F V  ++EGV LR    +  I +L G++  Q+ 
Sbjct: 1   MSVIKADAYGHGAITAAEALKES--DAFAVARLKEGVFLRQKGVEHPIVLLEGVNTEQDF 58

Query: 93  I-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSF 150
           I   +  L PVI    Q+     L          L VD+G +RLG+  ++     T  + 
Sbjct: 59  ITASEYQLSPVIHLHSQIQLLQTLTLPKPLAFNWLMVDSGMHRLGIRPEQVEMALTLLAE 118

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF 210
           +  +     ++SH A +D      N  QL      + H   +   LA+S+ ++     H 
Sbjct: 119 SSNISGEVGLMSHFANSDLDGDPRNQKQLAHML-ALKHKTSLPLCLANSAAVICLAESHQ 177

Query: 211 QLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL 267
           Q  RPG+ LYG +   +KS     ++ V+T + ++I +     G+ V YGG+      + 
Sbjct: 178 QWVRPGLMLYGVSPFSDKSGTELGLKPVMTLKTQLIAVYDLEVGDQVGYGGEWTAEVPTR 237

Query: 268 IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327
           I VA+IGY DGY   LS              +  I+G   P++G+++MD    ++     
Sbjct: 238 IGVASIGYGDGYSRHLSN-----------KAEVIIRGIKAPVIGRVSMDTICINLNHVEQ 286

Query: 328 IEVGDYIQIFG-PDIKLDDVALASGTTNYDLLVRIGTRY 365
            E GD + ++G  ++ ++ +A  + T  Y+L+  +  R 
Sbjct: 287 AETGDDVIVWGTANLAVEQLATLAETIPYELVTVLCQRV 325


>gi|319779475|ref|YP_004130388.1| Alanine racemase, catabolic [Taylorella equigenitalis MCE9]
 gi|317109499|gb|ADU92245.1| Alanine racemase, catabolic [Taylorella equigenitalis MCE9]
          Length = 393

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/399 (22%), Positives = 151/399 (37%), Gaps = 51/399 (12%)

Query: 5   EFLRLKIDLTALKNNWHSM----NALSGNA----RTAAVVKDNAYGLGCEKIAPALYN-- 54
             ++  +    L +N H +         N     +T AVVK NAYG G      A     
Sbjct: 3   RPIKAILHTNNLASNLHQITSSVRNYPKNTNKTIKTLAVVKANAYGHGLG----AAIEGF 58

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYS 113
           A      +  + +   LR       I +L G    Q+  ++ +  +   + S  Q+ +  
Sbjct: 59  ADADGLGLIDLVDAEVLRKKGNTQEILLLEGFFHKQDIDVLLEGGISTALHSPYQIAYLK 118

Query: 114 K---------LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLII 161
           +         +          ++ +TG NRLG    EA +        K   L      +
Sbjct: 119 ERLSEMAKESIAKDLKKINLFIKFNTGMNRLGFKPSEAHEIYDQIKTLKSTGLIGTVGTM 178

Query: 162 SHLACADDPSSHVNSVQL-ERFRTLISHYKG--IEASLASSSGILLGP----NYHFQLTR 214
            H A AD     V    + + F+     ++G  +  S+ +S+  +  P           R
Sbjct: 179 MHFANADSDDHEVQVHTIVDDFKKNCLEFEGRKVPVSICNSAACMRFPELASISGTNWIR 238

Query: 215 PGISLYG-----GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
           PG  LYG       D       ++  ++  A +I I+    G+ V YG +   T+ S IA
Sbjct: 239 PGCVLYGSQYFDYRDSEFTKLDLKPGMSLVADVIAIQNLKVGDSVGYGSKFTATKPSKIA 298

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE 329
           + A GYADGYP +                +  + G    + G+++MDM   D+T    + 
Sbjct: 299 IIACGYADGYPRSADN-----------NTEVGVLGKRAKLAGRVSMDMIAIDVTHIPEVN 347

Query: 330 VGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIGTRYAK 367
           +G  + ++G     +D+VA  SG   Y+L+  I  R  K
Sbjct: 348 IGTPVVLWGEGGPSIDEVAKMSGRIAYELMCGIAPRVPK 386


>gi|116669669|ref|YP_830602.1| alanine racemase [Arthrobacter sp. FB24]
 gi|116609778|gb|ABK02502.1| alanine racemase [Arthrobacter sp. FB24]
          Length = 402

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 95/382 (24%), Positives = 160/382 (41%), Gaps = 31/382 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++ +DL+A+ +N  ++   S      AVVK NAYG G   +A    +AG        + E
Sbjct: 18  QVSVDLSAISDNIRTLRQRSAAPHFMAVVKGNAYGHGLVDVARTALSAGADWLGTAQLHE 77

Query: 68  GVKLRLYTPQARIFV---LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
            + LR     A +     L        +   + ++   + SV QL   +      G    
Sbjct: 78  AIALRRAGITAPVLSWLYLAAASSETIREALEYDVDVSLGSVAQLDVVAGIARRLGRPAV 137

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVN--SVQ 178
             L++DTG +R G   ++  +    +   +      +  + +HLA AD P+   N  +V 
Sbjct: 138 VHLELDTGLSRGGARAEDWAELVAAARTAERDGTLSVRGVWTHLAWADVPAHPANLAAVA 197

Query: 179 LERFRTLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232
                 L +   G+E     ++SS+ IL  P + F + R G++ YG             +
Sbjct: 198 AFEEAVLAARAAGLEPELRHVSSSANILDRPEFAFDMVRAGLAFYGLAPADHLAPADFGL 257

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T  A ++L++K  AG  VSY  Q        + +  +GYADG P  +SG       
Sbjct: 258 RPALTVTAPVVLVKKVPAGTGVSYEHQAITHEPRYLGLIPLGYADGIPKGISGRSL---- 313

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVA 347
                    + G  VP++GK+ MD  M D+  D+  + VGD   +FG         DD  
Sbjct: 314 -------ILLGGRRVPVIGKVCMDQFMVDLGPDANGVAVGDTAVLFGDPRTGAASADDWG 366

Query: 348 LASGTTNYDLLVRIGTRYAKFY 369
            A G+   +++ RI  R  + Y
Sbjct: 367 AAIGSHGDEIINRIAPRLPRAY 388


>gi|237755608|ref|ZP_04584223.1| alanine racemase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692235|gb|EEP61228.1| alanine racemase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 311

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 153/327 (46%), Gaps = 27/327 (8%)

Query: 48  IAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106
           ++  L     ++ F V +  EG +LR       I +L G+   + +I+   NLIPVIS  
Sbjct: 1   MSKYLQELDFIEYFCVATPLEGKELRENGIFKNILILGGVLKEETEILNQYNLIPVISDF 60

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
            QL    KL     +    L+ DTG  RLG  L+            K  ++  +++HL+ 
Sbjct: 61  NQLEVARKL----KNRKIHLKFDTGMRRLGFYLENVEKI---KPLLKEFEIEGVLTHLSS 113

Query: 167 ADDPSSHVNSVQLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
           A D        Q++ F+ +++    K     + +S+G++   ++   + R G+++YG   
Sbjct: 114 A-DTDREYTINQIKEFKEILNLLDVKPKYIHVQNSAGVVYECDF-CNVIRVGLAMYGEKP 171

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
             +    ++ V++ +++II I+    G+ VSY G     +   +A+   GYADG P +LS
Sbjct: 172 FEDYPIELKQVMSVKSKIISIKDVKTGDRVSYNGSFVAKKPMKVAIVPFGYADGLPRSLS 231

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
                            + G   PILGKITMDMT+ D+++  +I +GD + I G      
Sbjct: 232 NRWFF-----------LVNGKEAPILGKITMDMTIVDVSEIENINIGDEVVIIGESGDKR 280

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAK 367
           I   D+A   GT +Y+++  I  R  +
Sbjct: 281 ITFGDIANIVGTISYEIMCGISKRVVR 307


>gi|241762419|ref|ZP_04760497.1| alanine racemase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373013|gb|EER62671.1| alanine racemase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 349

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 186/365 (50%), Gaps = 23/365 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  +  LRL++D +AL  NW S+N ++      A +K N YGLG E++   L  AG +DF
Sbjct: 1   MQISSPLRLELDKSALMANWQSLNRITAG-HCGAAIKANGYGLGAERVRHYLAQAGCRDF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           FV+S +E   L        + VL+G+         ++++ PV+ S       ++  +   
Sbjct: 60  FVSSWDEARLLDSSEKDFSLSVLHGLREDDLGYALNSSVKPVLCS---PAMIARWKAHAP 116

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + P  + VDTG NRLGLS++EA      S       +  I+SHLACAD+    +N  QLE
Sbjct: 117 NRPCDVMVDTGMNRLGLSMEEAG-----SGLLDGLSIDNILSHLACADEADHPLNQKQLE 171

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           RFR L +  +    SLA+S+GI L  +YHF L RPG++LYGG         ++ VV   A
Sbjct: 172 RFRILAARKQAKRYSLANSAGIFLSKDYHFDLARPGLALYGGLPVPQSKDILKPVVAIAA 231

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           + I +R+  AGE + YG      +   +A+  +GYADGY               F  G  
Sbjct: 232 QAIQVREVSAGEAIGYGACFVTPKKMRVAILHVGYADGYWRAF-----------FEKGHA 280

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
              G + P+ G+++MDM    + D+L+ + GD+   F  D  L   +  +G + Y+LL  
Sbjct: 281 RKDGVICPLAGRVSMDMITVALPDALTAQEGDW---FSVDFDLPSASQQTGLSQYELLTG 337

Query: 361 IGTRY 365
           +G RY
Sbjct: 338 LGHRY 342


>gi|317482523|ref|ZP_07941538.1| alanine racemase domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316915945|gb|EFV37352.1| alanine racemase domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 452

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/408 (23%), Positives = 163/408 (39%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF-Y 112
                    E + LR       R  +L  ++ G E     +   ++   + S+P +    
Sbjct: 84  TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G      ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G          +   +   +  +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|56552488|ref|YP_163327.1| alanine racemase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260753846|ref|YP_003226739.1| alanine racemase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56544062|gb|AAV90216.1| alanine racemase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258553209|gb|ACV76155.1| alanine racemase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 349

 Score =  302 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 184/365 (50%), Gaps = 23/365 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  +  LRL++D +AL  NW S+N ++      A +K N YGLG E++   L  AG +DF
Sbjct: 1   MQISSPLRLELDKSALMANWQSLNRITAG-HCGAAIKANGYGLGAERVRHYLAQAGCRDF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           FV+S +E   L        + VL+G+         ++++ PV+ S       ++  +   
Sbjct: 60  FVSSWDEARLLDSSEKDFSLSVLHGLREDDLGYALNSSVKPVLCS---PAMIARWKAHAP 116

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           + P  + VDTG NRLGLS++EA      S       +  I+SHLACAD+    +N  QLE
Sbjct: 117 NRPCDVMVDTGMNRLGLSMEEAG-----SGLLDGLSIDNILSHLACADEADHPLNQKQLE 171

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           RFR L +  +    SLA+S+GI L  +YHF L RPG++LYGG         ++ VV   A
Sbjct: 172 RFRILAARKQAKRYSLANSAGIFLSKDYHFDLARPGLALYGGLPVPQSKDILKPVVAIAA 231

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           + I +R+  AGE + YG      +   +A+  +GYADGY               F  G  
Sbjct: 232 QAIQVREVSAGEAIGYGACFVTPKKMRVAILHVGYADGYWRAF-----------FEKGHA 280

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
              G + P+ G+++MDM    + D L+   GD+   F  D  L   +  +G + Y+LL  
Sbjct: 281 RKDGVICPLAGRVSMDMITVALPDVLTAHEGDW---FSVDFDLPSASQQTGLSQYELLTG 337

Query: 361 IGTRY 365
           +G RY
Sbjct: 338 LGHRY 342


>gi|323357274|ref|YP_004223670.1| alanine racemase [Microbacterium testaceum StLB037]
 gi|323273645|dbj|BAJ73790.1| alanine racemase [Microbacterium testaceum StLB037]
          Length = 373

 Score =  302 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 149/373 (39%), Gaps = 31/373 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID+ A+  N      L+G     AVVK + YG G  + A A    G     V+ ++E + 
Sbjct: 13  IDVDAITENVRHFRRLTG-VEVIAVVKADGYGHGAHRAAQAALRGGATRIGVSDIDEALA 71

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           LR     A +F                ++   IS + QL    +           L+++T
Sbjct: 72  LRRAGIHAPLFAWLHAPGASFVEAVRHDIELGISDIDQLLRAGESAQGDRPAAVHLKIET 131

Query: 131 GFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--L 185
           G +R G++  +                 ++  + SHL+ A +         L RF    +
Sbjct: 132 GLSRNGIAPADWRVVFAEAARLERIGRLRVVGLFSHLSNASEEDDRAA---LARFEEGVV 188

Query: 186 ISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239
           ++   G+   L   A++   +  P       R GI +YG +   ++      ++  +T  
Sbjct: 189 LAASVGLNPPLRHIAATHAAIALPEARLTGVRIGIGIYGISPFHDRTSADLGLRPAMTLR 248

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             +  +R+  AG  VSYG   +  RD+ +A+  +GYADG P   S             G 
Sbjct: 249 GAVSAVRRVPAGTGVSYGYVYRTERDTTLALVPLGYADGVPRQASDR-----------GP 297

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355
             I G   P+ G++ MD  + D+ D   + VGD + +FG          D   A+ T +Y
Sbjct: 298 VVIGGRRFPVAGRVAMDQFVVDVGDHP-VSVGDEVVLFGDPTLGVPAARDWGDAADTIDY 356

Query: 356 DLLVRIGTRYAKF 368
           +++ R+G R  + 
Sbjct: 357 EIVTRVGPRVPRR 369


>gi|23465715|ref|NP_696318.1| alanine racemase [Bifidobacterium longum NCC2705]
 gi|23326396|gb|AAN24954.1| alanine racemase [Bifidobacterium longum NCC2705]
          Length = 452

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 97/408 (23%), Positives = 163/408 (39%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF-Y 112
                    E + LR       R  +L  ++ G E     +   ++   + S+P +    
Sbjct: 84  TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G      ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 144 AAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G          +   +   +  +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|89897688|ref|YP_521175.1| hypothetical protein DSY4942 [Desulfitobacterium hafniense Y51]
 gi|89337136|dbj|BAE86731.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 394

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 153/353 (43%), Gaps = 24/353 (6%)

Query: 7   LRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             + I+L A+ NN+  +   LS  AR  AVVK +AYGLG   +A  L   G   F VT+V
Sbjct: 4   AWIDINLDAIANNYREVTQQLSPAARVMAVVKADAYGLGAVPVAQTLQKLGCPAFAVTTV 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124
           EEG+ LR +  +  I VL  +   Q      ++L   +S    L  +  + +  G+    
Sbjct: 64  EEGLMLRQHGVEGIILVLGPVSAEQMAEALASDLQLTLSDFHMLREWETVAAGLGMEAKV 123

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+++TG  R G   +E  +               + +HLA A          Q+E F+ 
Sbjct: 124 HLKLETGMGRTGFFEKEWGELAAQLKQSPHITPVGVYTHLARAAQRDRAYTRQQVESFQR 183

Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVT 237
            +       + G+   + +S+  L  P++H+   R G  L G            +Q    
Sbjct: 184 GVNLLEEQGFAGLWKHVCNSAAFLDYPDWHYDFIRTGTLLIGHFPAPAFAGKLTLQDPWV 243

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY-------PLTLSGLDSEH 290
           A+ARI+ +R+   G  V Y    +   ++ +AV  +GYADG+       P  +       
Sbjct: 244 AKARIVSLRRVPKGTFVGYQSIYRTKAETQLAVIPVGYADGFGVQPHFVPQGVWDFIKIV 303

Query: 291 SPSVFLGGKGFI-------KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
             +     + +I       +G+ VP+ GKI M +T+ D+ + LS E GD + +
Sbjct: 304 IKNFLALCRIYIGQETVILQGHRVPVAGKIGMQLTVLDVGN-LSCETGDEVIL 355


>gi|294787104|ref|ZP_06752358.1| alanine racemase [Parascardovia denticolens F0305]
 gi|315226756|ref|ZP_07868544.1| alanine racemase [Parascardovia denticolens DSM 10105]
 gi|294485937|gb|EFG33571.1| alanine racemase [Parascardovia denticolens F0305]
 gi|315120888|gb|EFT84020.1| alanine racemase [Parascardovia denticolens DSM 10105]
          Length = 451

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 98/405 (24%), Positives = 170/405 (41%), Gaps = 42/405 (10%)

Query: 6   FLRLKIDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             ++ +DL  L++N  +M    +A+S +     VVK +AYG G    A A    G     
Sbjct: 27  PAQVVVDLATLRDNMKAMVDRVHAVSPSTAVLGVVKADAYGHGLLPTALAALAGGATWLG 86

Query: 62  VTSVEEGVKLRLYTP---QARIF--VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-L 115
                E + LR       +ARI   +  G     +++I   ++   + S+  +    +  
Sbjct: 87  TAQSREALLLRQKGVGPDRARIITWLYNGRQDPFDRLISQ-DIDLAVGSLAGIDAIVRGA 145

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
              G      ++VDTGF R G + +E   AL       +    ++    SHL+ AD P  
Sbjct: 146 QKIGRPARVHVKVDTGFGRNGFTPEEFDQALTRLRQGVDAGQLEVVGQWSHLSVADAPED 205

Query: 173 HV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGT 223
                    Q+  F       K  G+      LA+++     P  +F+L RPG+ LYG  
Sbjct: 206 PASRRATDDQIALFNEFTDRMKVAGLPPSIRHLANTAATFTRPEIYFELVRPGVGLYGYE 265

Query: 224 DKI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
                   + + ++  +T +A++  ++   AG  +SYG       ++  A   +GYADG 
Sbjct: 266 PDPVMGTGEDYGLKPAMTLQAQLGTVKNLPAGHSISYGRTYLTEGETSTADLPLGYADGI 325

Query: 280 PLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDSLS---IEVG 331
           P + SG +   +  V   GG   I       +V + G++ MD  + D+  S     +  G
Sbjct: 326 PRSASGFNRAGALGVDHPGGPVRIMTNQGPRLVRVSGRVCMDQCILDLHGSAEDWGVSEG 385

Query: 332 DYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D +++FGP       +   DD A A+GT +Y++   +  R  + Y
Sbjct: 386 DTVELFGPGRGEAYAEPTADDWARAAGTISYEIFTCLRNRIPRLY 430


>gi|256785780|ref|ZP_05524211.1| alanine racemase [Streptomyces lividans TK24]
 gi|289769672|ref|ZP_06529050.1| alanine racemase [Streptomyces lividans TK24]
 gi|289699871|gb|EFD67300.1| alanine racemase [Streptomyces lividans TK24]
          Length = 338

 Score =  301 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 142/335 (42%), Gaps = 29/335 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R +IDL AL+ N  ++   +  A   AVVK +AYG G    A A   AG       + 
Sbjct: 15  RARAEIDLAALRANVRALRERAPGAALMAVVKADAYGHGAIPCARAAVAAGATWLGTATP 74

Query: 66  EEGVKLRLYTP----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120
           +E + LR   P      RI        G  +   +  L   +S++  +        + GV
Sbjct: 75  QEALALRAAEPGLPDDVRIMCWLWTPGGPWREAVEARLDVSVSAMWAMEEVTGAARAAGV 134

Query: 121 SHPYALQVDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                L+ DTG  R G       +  +     +  + L +++ + SH ACAD+P     +
Sbjct: 135 PARVQLKADTGLGRGGCQPGADWERLVGAALRAEEEGLLRVTGLWSHFACADEPGHPSIA 194

Query: 177 VQLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---- 227
            QL RFR + ++   +G+      +A+S   L  P+ HF L RPGI++YG +        
Sbjct: 195 AQLTRFREMTAYAEQRGLRPEVRHIANSPATLTLPDAHFDLVRPGIAMYGVSPSPEIGTP 254

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
               ++ V+T  A + L+++   G  VSYG       ++ + +  +GYADG P   S   
Sbjct: 255 ADFGLRPVMTLAASLALVKQVPGGHGVSYGHHYTTPGETTLGLVPLGYADGIPRHASSS- 313

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
                     G   + G    + G+I MD  + D+
Sbjct: 314 ----------GPVLVDGKWRTVAGRIAMDQFVVDL 338


>gi|225873754|ref|YP_002755213.1| alanine racemase [Acidobacterium capsulatum ATCC 51196]
 gi|225793021|gb|ACO33111.1| alanine racemase [Acidobacterium capsulatum ATCC 51196]
          Length = 428

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 107/425 (25%), Positives = 174/425 (40%), Gaps = 72/425 (16%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             +  +I    L +N+  +  L+  + R AAVVK NAYG G    AP L  AG +   VT
Sbjct: 12  RPVWAEISRARLLHNFSMLQQLASPDIRLAAVVKANAYGHGATLCAPWLAAAGAEWLGVT 71

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--- 120
           SVEEGV +R      RI V+ G+  G+ + + +  L PV+     L   ++         
Sbjct: 72  SVEEGVAVRAVCATQRILVMSGLWQGEAEAVLEHCLTPVVWEPFHLDLLARAARQAKLPP 131

Query: 121 -SHPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            + P  L++DTG +R G +   L E L             +  +++H    D+  S V +
Sbjct: 132 QALPVHLEIDTGMSRQGAAHGGLLEELLRRLREEPDSPLLIEGVLTHFHSPDELDSPVTA 191

Query: 177 VQLERFRTLISHYKGIEASLA-----SSSGILLGP-----------NYHFQLTRPGISLY 220
            Q+  F T +        + A     +S+ +L G            ++   + RPG++LY
Sbjct: 192 AQIAAFATAVDTIAAAGLAPALLHAGNSTSLLTGHGLDALRALAARHHAQLMLRPGLALY 251

Query: 221 GGTDKINKS---------------------------------HPMQTVVTAEARIILIRK 247
           G T +   S                                    Q V++ ++RI+ +R 
Sbjct: 252 GYTPQAGGSVSEREEQSPRLKAEGYGLQPAHSHSLRGGASALEGFQPVLSLKSRIVSLRT 311

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AG    Y G  +  R + +A+  IGYADG    LSG            G   ++G+  
Sbjct: 312 IAAGATAGYNGTFRAARSTRLALLPIGYADGLSRLLSGR-----------GHVLVRGHRA 360

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGT 363
           PI G+I+MD T+ D++      +GD   + G      I  +D+A    T  +++L  I  
Sbjct: 361 PIAGRISMDQTILDVSGIPEAAIGDEAVLLGEQGNDRITAEDLAALCQTIPWEILTSIAA 420

Query: 364 RYAKF 368
           R  + 
Sbjct: 421 RVPRV 425


>gi|239622329|ref|ZP_04665360.1| alanine racemase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514326|gb|EEQ54193.1| alanine racemase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 452

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/408 (23%), Positives = 163/408 (39%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF-Y 112
                    E + LR       R  +L  ++ G E     +   ++   + S+P +    
Sbjct: 84  TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G      ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G          +   +   +  +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|291517241|emb|CBK70857.1| alanine racemase [Bifidobacterium longum subsp. longum F8]
          Length = 452

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 98/410 (23%), Positives = 164/410 (40%), Gaps = 44/410 (10%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTP---QARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF 111
                    E + LR       + RI  L  ++ G E     +   ++   + S+P +  
Sbjct: 84  TWLGTAQSHEALLLRKLGIGPDRCRI--LTWVYNGTEVPFDELIAADIDVSVGSLPGIDA 141

Query: 112 -YSKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACA 167
             +     G      ++VD+GF R G +      AL        + +  +    SHLA A
Sbjct: 142 VAAAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVA 201

Query: 168 DDPSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGIS 218
           D P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI 
Sbjct: 202 DSPDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIG 261

Query: 219 LYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
           LYG          +   +   +  +A++  ++   AG  +SYG       ++  A+  +G
Sbjct: 262 LYGYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLG 321

Query: 275 YADGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SL 326
           YADG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L
Sbjct: 322 YADGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAEL 381

Query: 327 SIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +  GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 GVHEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|312133175|ref|YP_004000514.1| alr [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772373|gb|ADQ01861.1| Alr [Bifidobacterium longum subsp. longum BBMN68]
          Length = 450

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/408 (23%), Positives = 163/408 (39%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 22  RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 81

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF-Y 112
                    E + LR       R  +L  ++ G E     +   ++   + S+P +    
Sbjct: 82  TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 141

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G      ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 142 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 201

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 202 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 261

Query: 221 GGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G          +   +   +  +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 262 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 321

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L +
Sbjct: 322 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 381

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 429


>gi|322688667|ref|YP_004208401.1| alanine racemase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460003|dbj|BAJ70623.1| alanine racemase [Bifidobacterium longum subsp. infantis 157F]
          Length = 452

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/410 (23%), Positives = 164/410 (40%), Gaps = 44/410 (10%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  ++L  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVNLKTMRDNMAHLVSVVGGPNSGTAVMGVVKADAYGHGLLPAALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTP---QARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF 111
                    E + LR       + RI  L  ++ G E     +   ++   + S+P +  
Sbjct: 84  TWLGTAQSHEALLLRKLGIGPDRCRI--LTWVYNGTEVPFDELIAADIDVSVGSLPGIDA 141

Query: 112 -YSKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACA 167
             +     G      ++VD+GF R G +      AL        + +  +    SHLA A
Sbjct: 142 VAAAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVA 201

Query: 168 DDPSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGIS 218
           D P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI 
Sbjct: 202 DSPDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIG 261

Query: 219 LYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
           LYG          +   +   +  +A++  ++   AG  +SYG       ++  A+  +G
Sbjct: 262 LYGYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLG 321

Query: 275 YADGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SL 326
           YADG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L
Sbjct: 322 YADGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAEL 381

Query: 327 SIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +  GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 GVHEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|300813596|ref|ZP_07093927.1| alanine racemase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512344|gb|EFK39513.1| alanine racemase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 388

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 149/369 (40%), Gaps = 29/369 (7%)

Query: 1   MHSN--EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M+ N      ++++L    +N   + ++   N++   V+K + Y  G  ++  A    G+
Sbjct: 1   MYKNPTRSAWVEVNLDNYISNLKYIKSIINKNSKIMCVIKSDGYRAGALELTEASIKFGI 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V ++ EG+ LR +     I +L        + +   +++P I S      Y+++  
Sbjct: 61  NYFGVATLSEGISLRKHFKDINILILGYTPSYLLEDLCKYDIMPNIYSYDNCKDYNEICK 120

Query: 118 C-GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
             G      L +DTG NR+G    +EA             ++  + SH A A D      
Sbjct: 121 KYGKVGKIHLSIDTGMNRVGFIPGKEAFFDIIKISKLSNIKIDGVFSHFAKA-DVDEDFT 179

Query: 176 SVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NK 228
             Q + F +     +          +++S+ IL    Y   + RPG  ++G       ++
Sbjct: 180 KKQFDTFTSFTKEIENAGVNLGLKHISNSASILKHREYDLDMVRPGAIMHGLYKGFFKDE 239

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             P++  +   A I  I+    G+ VSYG +   T+D+ +    +GYADG+P  LSG  S
Sbjct: 240 KLPLKKDLQVFAMIANIKTIKKGQGVSYGHKYIATKDTKVVTIPLGYADGFPRILSGKFS 299

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        I G   P +G I MD  M D T     ++ D   + G D    I   
Sbjct: 300 -----------VLIGGKKCPQIGNICMDQFMVDATGI-DCKIDDVAVLLGKDGDEEISAF 347

Query: 345 DVALASGTT 353
           D+   +G  
Sbjct: 348 DLCQLTGDI 356


>gi|307701631|ref|ZP_07638647.1| alanine racemase [Mobiluncus mulieris FB024-16]
 gi|307613134|gb|EFN92387.1| alanine racemase [Mobiluncus mulieris FB024-16]
          Length = 457

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/453 (23%), Positives = 177/453 (39%), Gaps = 97/453 (21%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +R  +DL A + N   M   +  ++  A+VK +AYG G E+++ A   AG Q   V 
Sbjct: 9   SWPVRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVA 68

Query: 64  SVEEGVKLRLYTPQA----------------------------------RIFVLYGIHPG 89
            V E  +LR +  ++                                  RIF        
Sbjct: 69  KVAEAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTVQRPRIFAWLYTPST 128

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
             K      +   +S++ QL   S    + G+     L+VDTG  R G +L E  +    
Sbjct: 129 DLKSTIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKL 188

Query: 149 SFNKK---LGQLSLIISHLACADDPSSH---VNSVQLERFRT-----LISHYKGIEASLA 197
           +  ++   L ++S I SH A +D+PS+        QL  F       L+S  +     +A
Sbjct: 189 ARARERSGLVEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVSGLQPKLRHMA 248

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGEL 253
           ++  IL  P  HF L R GIS YG +        ++  ++ V+  E  +  ++K  AG  
Sbjct: 249 ATGAILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSA 308

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           VSYGG+      + +A+  IGYADG+   L G             K ++ G++ P++G+I
Sbjct: 309 VSYGGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRI 357

Query: 314 TMDMTMFDITDS---------LSIEVGDYIQIFG----------PDIKLDD--VALASG- 351
            MD  + ++  +           ++ GD   IFG          P     +  VA     
Sbjct: 358 PMDQIILNLGSAIDGAGDLIPPPLKPGDLAVIFGDPNRLPPGFPPGEPAGESTVADLWNH 417

Query: 352 --------------TTNYDLLVRIGTRYAKFYT 370
                         T +Y++L  +     + Y 
Sbjct: 418 DPVPSADALAAAADTISYEILTAVDKDTPRIYV 450


>gi|282883163|ref|ZP_06291762.1| alanine racemase [Peptoniphilus lacrimalis 315-B]
 gi|281296975|gb|EFA89472.1| alanine racemase [Peptoniphilus lacrimalis 315-B]
          Length = 388

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 149/369 (40%), Gaps = 29/369 (7%)

Query: 1   MHSN--EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M+ N      ++++L    +N   + ++   N++   V+K + Y  G  ++  A    G+
Sbjct: 1   MYKNPTRSAWVEVNLDNYISNLKYIKSIINKNSKIMCVIKSDGYRAGALELTEASVKFGI 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
             F V ++ EG+ LR +     I +L        + +   +++P I S      Y+++  
Sbjct: 61  NYFGVATLSEGISLRKHFKDINILILGYTPSYLLEDLCKYDIMPNIYSYDNCKDYNEICK 120

Query: 118 C-GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
             G      L +DTG NR+G    +EA             ++  + SH A A D      
Sbjct: 121 KYGKVGKIHLSIDTGMNRVGFIPGKEAFFDIIKISKLSNIKIDGVFSHFAKA-DVDEDFT 179

Query: 176 SVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NK 228
             Q + F +     +          +++S+ IL    Y   + RPG  ++G       ++
Sbjct: 180 KKQFDTFTSFTKEIENAGVNLGLKHISNSASILKHREYDLDMVRPGAIMHGLYKGFFKDE 239

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
             P++  +   A I  I+    G+ VSYG +   T+D+ +    +GYADG+P  LSG  S
Sbjct: 240 KLPLKKDLQVFAMIANIKTIKKGQGVSYGHKYIATKDTKVVTIPLGYADGFPRILSGKFS 299

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        I G   P +G I MD  M D T     ++ D   + G D    I   
Sbjct: 300 -----------VLIGGKKCPQIGNICMDQFMVDATGI-DCKINDVAVLLGKDGDEEISAF 347

Query: 345 DVALASGTT 353
           D+   +G  
Sbjct: 348 DLCQLTGDI 356


>gi|269977008|ref|ZP_06183982.1| alanine racemase [Mobiluncus mulieris 28-1]
 gi|269934839|gb|EEZ91399.1| alanine racemase [Mobiluncus mulieris 28-1]
          Length = 457

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/453 (23%), Positives = 177/453 (39%), Gaps = 97/453 (21%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +R  +DL A + N   M   +  ++  A+VK +AYG G E+++ A   AG Q   V 
Sbjct: 9   SWPVRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVA 68

Query: 64  SVEEGVKLRLYTPQA----------------------------------RIFVLYGIHPG 89
            V E  +LR +  ++                                  RIF        
Sbjct: 69  KVAEAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTVQRPRIFAWLYTPST 128

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
             K      +   +S++ QL   S    + G+     L+VDTG  R G +L E  +    
Sbjct: 129 DLKSTIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKL 188

Query: 149 SFNKK---LGQLSLIISHLACADDPSSH---VNSVQLERFRT-----LISHYKGIEASLA 197
           +  ++   L ++S I SH A +D+PS+        QL  F       L++  +     +A
Sbjct: 189 ARARERSGLVEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVNGLQPKLRHMA 248

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGEL 253
           ++  IL  P  HF L R GIS YG +        ++  ++ V+  E  +  ++K  AG  
Sbjct: 249 ATGAILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSA 308

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           VSYGG+      + +A+  IGYADG+   L G             K ++ G++ P++G+I
Sbjct: 309 VSYGGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRI 357

Query: 314 TMDMTMFDITDS---------LSIEVGDYIQIFG----------PDIKLDD--VALASG- 351
            MD  + ++  +           ++ GD   IFG          P     +  VA     
Sbjct: 358 PMDQIILNLGSAIDGAGDLIPPPLKPGDLAVIFGDPNRLPPGFPPGEPAGESTVADLWNH 417

Query: 352 --------------TTNYDLLVRIGTRYAKFYT 370
                         T +Y++L  +     + Y 
Sbjct: 418 DPVPSADALAAAADTISYEILTAVDKDTPRIYV 450


>gi|227546323|ref|ZP_03976372.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213304|gb|EEI81176.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 452

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 97/410 (23%), Positives = 164/410 (40%), Gaps = 44/410 (10%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  ++L  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVNLKTMRDNMAHLISVVGGPNSGTAVMGVVKADAYGHGLLPAALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTP---QARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF 111
                    E + LR       + RI  L  ++ G E     +   ++   + S+P +  
Sbjct: 84  TWLGTAQSHEALLLRKLGIGPDRCRI--LTWVYNGTEVPFDELIAADIDVSVGSLPGIDA 141

Query: 112 -YSKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACA 167
             +     G      ++VD+GF R G +      AL        + +  +    SHLA A
Sbjct: 142 VAAAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVA 201

Query: 168 DDPSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGIS 218
           D P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI 
Sbjct: 202 DSPDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIG 261

Query: 219 LYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
           LYG          +   +   +  +A++  ++   AG  +SYG       ++  A+  +G
Sbjct: 262 LYGYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLG 321

Query: 275 YADGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SL 326
           YADG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L
Sbjct: 322 YADGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAEL 381

Query: 327 SIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +  GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 GVHEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|295698664|ref|YP_003603319.1| alanine racemase [Candidatus Riesia pediculicola USDA]
 gi|291156967|gb|ADD79412.1| alanine racemase [Candidatus Riesia pediculicola USDA]
          Length = 362

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/371 (26%), Positives = 166/371 (44%), Gaps = 27/371 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           I   AL  N   +  L+ N+R  A+VK NAYG G + +   L +  V  F V+++EE  K
Sbjct: 6   IRKKALIYNIKKIQKLTNNSRIIAIVKSNAYGHGSKFVTRTLKDF-VDYFGVSNIEEAHK 64

Query: 71  LRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           +     +  I  L G  +  + K+     L  V+ +  Q+    K           ++++
Sbjct: 65  IVDDGIKNSIISLMGFINYEELKLASQLRLEVVVHNHEQINILEK-EKIKFPIAVWMKIN 123

Query: 130 TGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSS---HVNSVQLERFRTL 185
           TG NRLG    +A+   +     K + +    ISH + A+           +QL+RF+  
Sbjct: 124 TGMNRLGFLPDQAVKIYNRLKKCKNVRKPVNTISHFSSANIQEPYLFDFTQLQLDRFKKF 183

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242
           I    G + S+ASSSGIL  P+ H +  R GI +YG + K  +      +   +  ++++
Sbjct: 184 IIDKNG-KNSIASSSGILFWPSSHLRWVRAGIIMYGISPKFGRNGREFGLIPAMKLKSKL 242

Query: 243 ILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           I +R+   G+ + YG      R  + I + +IGY DGY    S                 
Sbjct: 243 ISVRQFKPGQTLGYGQNWINNRKKTYIGIVSIGYGDGYHSCDS-----------KNSWVL 291

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTN--YDLL 358
           I G  VP++G I MDM   D+ + L  +VGD + I+G     +++ A      +  Y  +
Sbjct: 292 INGRRVPVIGSILMDMIFVDLGEHLCDKVGDEVIIWGEKKFPIEE-AFKGHDVSCLYRSV 350

Query: 359 VRIGTRYAKFY 369
            ++ +R  + Y
Sbjct: 351 SQLTSRVKRKY 361


>gi|227876092|ref|ZP_03994211.1| alanine racemase [Mobiluncus mulieris ATCC 35243]
 gi|227843391|gb|EEJ53581.1| alanine racemase [Mobiluncus mulieris ATCC 35243]
          Length = 457

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/453 (23%), Positives = 177/453 (39%), Gaps = 97/453 (21%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +R  +DL A + N   M   +  ++  A+VK +AYG G E+++ A   AG Q   V 
Sbjct: 9   SWPVRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVA 68

Query: 64  SVEEGVKLRLYTPQA----------------------------------RIFVLYGIHPG 89
            V E  +LR +  ++                                  RIF        
Sbjct: 69  KVAEAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTVQRPRIFAWLYTPST 128

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
             K      +   +S++ QL   S    + G+     L+VDTG  R G +L E  +    
Sbjct: 129 DLKSTIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKL 188

Query: 149 SFNKK---LGQLSLIISHLACADDPSSH---VNSVQLERFRT-----LISHYKGIEASLA 197
           +  ++   L ++S I SH A +D+PS+        QL  F       L++  +     +A
Sbjct: 189 ARARERSGLAEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVNGLQPKLRHMA 248

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGEL 253
           ++  IL  P  HF L R GIS YG +        ++  ++ V+  E  +  ++K  AG  
Sbjct: 249 ATGAILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSA 308

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           VSYGG+      + +A+  IGYADG+   L G             K ++ G++ P++G+I
Sbjct: 309 VSYGGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRI 357

Query: 314 TMDMTMFDITDS---------LSIEVGDYIQIFG----------PDIKLDD--VALASG- 351
            MD  + ++  +           ++ GD   IFG          P     +  VA     
Sbjct: 358 PMDQIILNLGSAIDGAGDLIPPPLKPGDLAVIFGDPNRLPPGFPPGEPAGESTVADLWNH 417

Query: 352 --------------TTNYDLLVRIGTRYAKFYT 370
                         T +Y++L  +     + Y 
Sbjct: 418 DPVPSADALAAAADTISYEILTAVDKDTPRIYV 450


>gi|289706579|ref|ZP_06502929.1| alanine racemase [Micrococcus luteus SK58]
 gi|289556714|gb|EFD50055.1| alanine racemase [Micrococcus luteus SK58]
          Length = 401

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 160/389 (41%), Gaps = 39/389 (10%)

Query: 9   LKIDLTALKNNWHSMNAL---SGNAR--TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            +IDL A+++N   +         +R    AVVK +AYG G   +A A   AG     V 
Sbjct: 15  ARIDLAAVRHNVGVLQERIRCPDGSRPLLTAVVKADAYGHGAVAVARAAAAAGADRLGVA 74

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK---LMSCGV 120
            V E + LR    +  +               +  +   +S             L   G 
Sbjct: 75  HVREALALRAAGVRLPVLAWLHTGATDFAAAVEAEVTLGVSGWDLDAVADAVCGLRGRGG 134

Query: 121 SHP-----YALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSS 172
           + P       L+ DTG  R G   +    F   +   +   L ++  + SHL  AD+P  
Sbjct: 135 AGPEARAVLHLKADTGLGRHGCPPERWPAFVERAAELEAAGLVRVEGVFSHLGVADEPDR 194

Query: 173 HV-NSVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
               + QL RF  + +         +   LA++   L  P+ H  + R G+ LYG +   
Sbjct: 195 AAETTAQLLRFERMAAEAAETLGHPLLRHLANTPATLSRPDTHLDMVRVGLGLYGLSPFA 254

Query: 227 N---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
           +       ++  ++    +  ++   AG+ VSYG +      + + +  +GYADG P   
Sbjct: 255 DVTAAELGLRPAMSLVTVLANVKAVPAGQGVSYGFRHVTAEPTTLGLVPVGYADGVPR-- 312

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DI 341
                     V  G +  + G  VP++G+I MD  + D+    +   GD +++FGP   I
Sbjct: 313 ----------VVEGTRVHVGGRTVPVVGRIAMDQFVVDLGPDATDAPGDAVELFGPASGI 362

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            +++ A A+GT NY+L+ RIG R  + + 
Sbjct: 363 PVEEWAAAAGTINYELVTRIGGRVDRQHV 391


>gi|303246677|ref|ZP_07332955.1| alanine racemase [Desulfovibrio fructosovorans JJ]
 gi|302492017|gb|EFL51895.1| alanine racemase [Desulfovibrio fructosovorans JJ]
          Length = 373

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 105/385 (27%), Positives = 164/385 (42%), Gaps = 32/385 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++ +LR ++ L  +  N+  + +  G+    AV+K +AYG G  + A AL  AG   F +
Sbjct: 4   AHNYLRTRVRLDNIVANYKHLCSFGGH--VLAVIKADAYGHGLVETARALAGAGCDAFAI 61

Query: 63  TSVEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
            SV EG  LR       I  L   + P  + ++ D ++ P I    QL   + L +  G 
Sbjct: 62  GSVAEGAALRQSGCAGAIVSLVGPVLPEDDAMVLDFDVTPFIHDFDQLARLAALAAGQGK 121

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQL 179
               AL+ DTG  RLG    +              ++ +  SHLA ADDP++      Q 
Sbjct: 122 KARVALKFDTGMARLGFCECDVPHLLETLRGMPAIEVVMASSHLATADDPNAFDFVGEQG 181

Query: 180 ERFRTLISHYKG----IEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSHPMQ- 233
            +F  +    +     +EASL +S+GIL    ++ F+  R GI+LYG       +     
Sbjct: 182 SKFARVCQGLRDGGLTLEASLCNSAGILAHATDFGFEARRAGIALYGVNPFAGTAREPLG 241

Query: 234 ----TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
                 +    RI+ +    +G  +SYG      RD  +A+ A GYAD Y   LS     
Sbjct: 242 AGLVPAMETVTRIVSVHDLASGCSISYGRTYTAERDMRVAIVAAGYADAYSRGLSNR--- 298

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                   G   + G  V I+G++ M +T  DIT       GD I + G +    I  +D
Sbjct: 299 --------GYMCLAGKRVAIVGRVCMQLTAVDITGV-DAAPGDVIHLLGGEGLGAITAED 349

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +A    T  Y++    G    + Y 
Sbjct: 350 LATWWETIPYEVFCLFGL-NPREYC 373


>gi|306819368|ref|ZP_07453076.1| alanine racemase [Mobiluncus mulieris ATCC 35239]
 gi|304647855|gb|EFM45172.1| alanine racemase [Mobiluncus mulieris ATCC 35239]
          Length = 457

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 106/453 (23%), Positives = 177/453 (39%), Gaps = 97/453 (21%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  +R  +DL A + N   M   +  ++  A+VK +AYG G E+++ A   AG Q   V 
Sbjct: 9   SWPVRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVA 68

Query: 64  SVEEGVKLRLYTPQA----------------------------------RIFVLYGIHPG 89
            V E  +LR +  ++                                  RIF        
Sbjct: 69  KVAEAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTAQRPRIFAWLYTPST 128

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148
             K      +   +S++ QL   S    + G+     L+VDTG  R G +L E  +    
Sbjct: 129 DLKSTIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKL 188

Query: 149 SFNKK---LGQLSLIISHLACADDPSSH---VNSVQLERFRT-----LISHYKGIEASLA 197
           +  ++   L ++S I SH A +D+PS+        QL  F       L+S  +     +A
Sbjct: 189 ARARERSGLVEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVSGLQPKLRHMA 248

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGEL 253
           ++  IL  P  HF L R GIS YG +        ++  ++ V+  E  +  ++K  AG  
Sbjct: 249 ATGAILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSA 308

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           VSYGG+      + +A+  IGYADG+   L G             K ++ G++ P++G+I
Sbjct: 309 VSYGGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRI 357

Query: 314 TMDMTMFDITDS---------LSIEVGDYIQIFG----------PDIKLDD--VALASG- 351
            MD  + ++  +           ++ GD   IFG          P     +  VA     
Sbjct: 358 PMDQIILNLGSAIDGAGDLIPPPLKAGDLAVIFGDPNRLPPGFPPGEPAGESTVADLWNH 417

Query: 352 --------------TTNYDLLVRIGTRYAKFYT 370
                         T +Y++L  +     + Y 
Sbjct: 418 DPVPSADALAAAADTISYEILTAVDKDTPRIYV 450


>gi|322690655|ref|YP_004220225.1| alanine racemase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455511|dbj|BAJ66133.1| alanine racemase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 452

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/410 (23%), Positives = 163/410 (39%), Gaps = 44/410 (10%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTP---QARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF 111
                    E + LR       + RI  L  ++ G E     +   ++   + S+P +  
Sbjct: 84  TWLGTAQSHEALLLRKLGIGPDRCRI--LTWVYNGTEVPFDELIAADIDVSVGSLPGIDA 141

Query: 112 -YSKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACA 167
             +     G      ++VD+GF R G +      AL          +  +    SHLA A
Sbjct: 142 VAAAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKGGVLHIVGQWSHLAVA 201

Query: 168 DDPSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGIS 218
           D P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI 
Sbjct: 202 DSPDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIG 261

Query: 219 LYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
           LYG          +   +   +  +A++  ++   AG  +SYG       ++  A+  +G
Sbjct: 262 LYGYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLG 321

Query: 275 YADGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SL 326
           YADG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L
Sbjct: 322 YADGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAEL 381

Query: 327 SIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +  GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 GVHEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|329945781|ref|ZP_08293468.1| alanine racemase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528229|gb|EGF55207.1| alanine racemase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 446

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 95/416 (22%), Positives = 160/416 (38%), Gaps = 65/416 (15%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL A+ +N   +   +G     AVVK +AYG G   IA    +AG     V  + E
Sbjct: 32  RAVIDLEAVAHNGRLLAQTAG-VPWMAVVKADAYGHGLGPIALTALSAGASWLGVAQLAE 90

Query: 68  GVKLR----LYTPQARIF--------VLYGIHPGQEK-----------IIFDTNLIPVIS 104
            + LR           +         VL  + P  +                 +L   +S
Sbjct: 91  ALTLRALLDEAGVARPVEEPSGQAPRVLSWLLPVMDPARAACEDSPLRAALKADLDLSVS 150

Query: 105 SV-PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLI 160
           ++       +   +   +    L+VDTG +R G   ++            ++    +  +
Sbjct: 151 TLSQLEALAAAARAQATTARLHLKVDTGMSRGGAMAEDLPALAAALRRAVDEGAVDVVGL 210

Query: 161 ISHLACADDPSSHVNSVQLERFRTL-----ISHYKGIEASLASSSGILLGPNYHFQLTRP 215
            SHL+ AD+P+S      L R+R        +        LA++ G+L  P     L R 
Sbjct: 211 WSHLSRADEPTSGSTEEHLVRYRQAERIVCEAGLTPSIHHLAATGGLLWHPEARMDLVRA 270

Query: 216 GISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
           GI LYG +            ++  +  E+ ++ +++   G+ VSYGG      D  + + 
Sbjct: 271 GIGLYGLSPDPSVTTGAELGLRPAMRLESELVQVKRIDVGQAVSYGGTWSAPTDRWVGLV 330

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---- 327
            +GY+DG P   S             G   I G M  I+G++ MD  + D+  +      
Sbjct: 331 PLGYSDGVPRAASST-----------GPVGIGGMMTAIVGRVCMDQVVIDLGPAQDETGS 379

Query: 328 -----IEVGDYIQIFGPD--------IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
                 +VGD   ++G            +D+ A A GT NY+++ R+G R  + Y 
Sbjct: 380 SLPAPAQVGDTTVLWGAPDALGQEAVPTVDEWAQACGTINYEIVTRLGARIPRCYV 435


>gi|239918156|ref|YP_002957714.1| alanine racemase [Micrococcus luteus NCTC 2665]
 gi|281415657|ref|ZP_06247399.1| alanine racemase [Micrococcus luteus NCTC 2665]
 gi|239839363|gb|ACS31160.1| alanine racemase [Micrococcus luteus NCTC 2665]
          Length = 401

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 161/389 (41%), Gaps = 39/389 (10%)

Query: 9   LKIDLTALKNNWHSMN---ALSGNAR--TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           ++IDL A+++N   +         +R    AVVK +AYG G   +A A   AG     V 
Sbjct: 15  VRIDLAAVRHNVGVLRERIRRPDGSRPLLTAVVKADAYGHGAVAVARAAAAAGADRLGVA 74

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK---LMSCGV 120
            V E + LR       +               +  +   +S             L + G 
Sbjct: 75  HVREALALRAAGVPLPVLAWLHTGATDFAAAVEAEVTLGVSGWDLDAAADAVRGLRARGG 134

Query: 121 SHP-----YALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSS 172
           + P       L+ DTG  R G + +    F   +   +   L ++  + SHL  AD+P  
Sbjct: 135 AGPEARAVLHLKADTGLGRHGCTPERWPAFVARAAELEAAGLVRVEGVFSHLGVADEPDR 194

Query: 173 HV-NSVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
               + QL RF  + +         +   LA++   L  P+ H  + R G+ LYG +   
Sbjct: 195 AAETTAQLLRFERMAAEAAETLGHPLLRHLANTPATLARPDTHLDMVRVGLGLYGLSPFA 254

Query: 227 N---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                   ++  ++    +  ++   AG+ VSYG +      + + +  +GYADG P   
Sbjct: 255 EVTAAELGLRPAMSLVTVLANVKAVPAGQGVSYGFRHVTAEPTTLGLVPVGYADGVPR-- 312

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DI 341
                     V  G +  + G  VP++G+I MD  + D+    +   GD +++FGP   I
Sbjct: 313 ----------VVEGTRVHVGGRTVPVVGRIAMDQFVVDLGPDAADAPGDAVELFGPASGI 362

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            +++ A A+GT NY+L+ RIG R  + + 
Sbjct: 363 PVEEWAAAAGTINYELVTRIGGRVDRQHV 391


>gi|160947043|gb|ABX54690.1| serine racemase [Enterococcus faecalis]
          Length = 366

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 97/363 (26%), Positives = 157/363 (43%), Gaps = 31/363 (8%)

Query: 16  LKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           L +N   +   +  + +  AVVK NAYG+    +A  L   G+  F V +++E + LR  
Sbjct: 17  LLHNVQVIKKNIPKSTKIMAVVKANAYGINAVNVAIILEYIGIDFFAVATIDEAIALRKN 76

Query: 75  TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNR 134
              + I +L    P +   +    L   I S         L   G      L+VDTG +R
Sbjct: 77  GITSNILILGYTTPTKVDDLIHYELTQTIVS---KEHAYFLNKTGKKIMCHLKVDTGMHR 133

Query: 135 LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFRTLISHYKG 191
           LG+     L+     FN    ++  + SHL  ADD S         Q+ R+ T+I+  K 
Sbjct: 134 LGVEP--TLEEICPIFNYPFLKIKGVYSHLGSADDLSEEGKQRTIKQISRYNTIIAELKR 191

Query: 192 IEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARI 242
                    L SS GIL      +   RPGI LYG     + +      +Q VV  +A++
Sbjct: 192 KRVDVGLTHLQSSYGILNYSELAYDYVRPGIILYGLLSNNDHNVKLHLDLQPVVAVKAQL 251

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I  +K   GE + YG   +LT    I V +IGYADG P  LS  +               
Sbjct: 252 ISKKKIAPGEYIGYGTDTQLTSSKTIGVLSIGYADGIPRNLSNGEY----------CVVF 301

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           +   +P +G+I MDM + D+++   I +G  + +      +++++    T   +++  +G
Sbjct: 302 EDKQIPQIGRICMDMMLVDLSNCSDIPLGVMVDVL---PNIEEISQIQSTITNEIISCLG 358

Query: 363 TRY 365
           +R 
Sbjct: 359 SRL 361


>gi|310287816|ref|YP_003939074.1| Alanine racemase [Bifidobacterium bifidum S17]
 gi|309251752|gb|ADO53500.1| Alanine racemase [Bifidobacterium bifidum S17]
          Length = 452

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 99/406 (24%), Positives = 165/406 (40%), Gaps = 44/406 (10%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             +  +DL  L++N   +  + G          VVK +AYG G    A A    G     
Sbjct: 28  PAQAIVDLATLRDNMAHLVDVVGGPHSGTAVMGVVKADAYGHGLLPAALAALAGGATWLG 87

Query: 62  VTSVEEGVKLRLYTP---QARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYS-K 114
                E + LR       + RI  L  ++ G +     + D ++   + S+  +   +  
Sbjct: 88  TAQSHEALLLRKLGIGPDRCRI--LTWVYNGMDVPFDELIDNDIDISVGSLAGIDALADA 145

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
               G      ++VD+GF R G +      AL       ++ +  +    SHLA AD P 
Sbjct: 146 ARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAHEGVLHIVGQWSHLAVADSPD 205

Query: 172 SHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGG 222
                     Q+E F       +  GI      LA+++  L  P  HF+LTRPGI LYG 
Sbjct: 206 VPEFVASTDRQIESFTEFTRRMEAAGIAPEIRHLANTAATLNRPEIHFELTRPGIGLYGY 265

Query: 223 TDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
                    +   ++  +T +A++  ++   AG  VSYG       ++  A+  +GYADG
Sbjct: 266 EPDPAMGTPRDWHLKPAMTLQAQLGTVKDVEAGHGVSYGRTYLTPDNTSTAIVPLGYADG 325

Query: 279 YPLTLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITD---SLSIEV 330
              + SG D + +  V   GG   +     P    + G++ MD  + D+      L +  
Sbjct: 326 IHRSASGFDMQGAKHVEKAGGPVRVMTSAGPRLLHVCGRVCMDQFIVDLHGSAAELGVHE 385

Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 386 GDTVELFGPGRGEQYGEPTADDWARAADTISYEVFTCLRNRIPRLY 431


>gi|15806106|ref|NP_294810.1| alanine racemase [Deinococcus radiodurans R1]
 gi|6458816|gb|AAF10657.1|AE001958_11 alanine racemase [Deinococcus radiodurans R1]
          Length = 367

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 164/364 (45%), Gaps = 25/364 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67
             I   AL +N  ++   SG  R    VK +AYG G E +         V    V + +E
Sbjct: 23  AHISAAALDHNLSALAQRSG-TRLLLPVKADAYGHGMELVGRLAAAHPDVWGLAVATPQE 81

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              L        + +L    P +   + D  +   +S++ ++                L+
Sbjct: 82  AETLARLDLGKPLLLLTPPAPEELGALADLGVRLPVSTLAEVEALPAHAQA------HLK 135

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NRLG    +A+        +  GQL  + +H A AD+P       QL RFR+++ 
Sbjct: 136 VDTGMNRLGARPADAVAVGRALAER--GQLEGVYTHFATADEPDLSFALTQLVRFRSVLD 193

Query: 188 HYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTDK-INKSHPMQTVVTAEARIILI 245
               + A  A+  G+L  G      L RPG++ YG   + +     ++ V+T  AR+  +
Sbjct: 194 ALPPVLAHCANGGGVLSFGRIEGMSLARPGLAAYGYVPEHLRHVCALRPVMTVRARVNQL 253

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
             A  GE VSYG   +  R++ +AV  +GYADGYP   +G  +             I G 
Sbjct: 254 HTAYPGETVSYGALWRAERETGVAVVGMGYADGYPRNATGRAA-----------VLIGGE 302

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIGTR 364
             P+LG+I MD  M D+T  L + VGD+ +++G  D+ + DVA    T  Y++L  +G+R
Sbjct: 303 RRPVLGRICMDQMMVDVTG-LDVGVGDWAELWGEGDLSVTDVARWGDTIEYEVLTGLGSR 361

Query: 365 YAKF 368
             + 
Sbjct: 362 VERR 365


>gi|332295096|ref|YP_004437019.1| Alanine racemase [Thermodesulfobium narugense DSM 14796]
 gi|332178199|gb|AEE13888.1| Alanine racemase [Thermodesulfobium narugense DSM 14796]
          Length = 352

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 96/365 (26%), Positives = 158/365 (43%), Gaps = 18/365 (4%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            L+IDL A+ +N+  +      +    V+K NAYG+G   +A AL +       +  +EE
Sbjct: 4   WLEIDLDAILSNYKIIKEYV-KSDLIPVIKSNAYGMGLIPVANALKDV-ANLIAIGDIEE 61

Query: 68  GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
              LR    +  + ++  I    + ++  + N+   I S    +F S +    G +    
Sbjct: 62  AQTLRRSGFEGNLLLIVPIFSREEAELCVEYNVFTAIDSFDMASFLSDIAKKSGKTVGVH 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++VD G +R G+  +E  +F          QL  I SH     +    +   QL  F  +
Sbjct: 122 VKVDIGMHRFGVKPEELDNFIKQISYLPNIQLMGIFSHFPLGLNL---ITEEQLILFDRI 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
              YK +   L +S   +        + R G+ +YG      KS  ++ VV  +A I+ I
Sbjct: 179 SEKYKNLIVHLPNSQNTVENFESLKFIPRCGLLIYGAMPSDVKSFVLKNVVKLKANIVKI 238

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
               AG+  SYG      +DS IAV +IGYADG    LS   S             +KG 
Sbjct: 239 HDISAGQSWSYGYSYTAHKDSKIAVISIGYADGLKRALSNKWSAK-----------VKGS 287

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           + P+ G I M+ +  DIT   ++ VGD   +   D+K++D+A    T  +++LV      
Sbjct: 288 ICPLRGTINMNFSFVDITGVDNVRVGDEAILLDEDLKIEDMAKTIDTVPHEILVSFRESM 347

Query: 366 AKFYT 370
            + Y 
Sbjct: 348 KRIYV 352


>gi|319442957|ref|ZP_07992113.1| hypothetical protein CvarD4_14474 [Corynebacterium variabile DSM
           44702]
          Length = 362

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/364 (26%), Positives = 154/364 (42%), Gaps = 32/364 (8%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L   A   AVVK +AY  G   +A    +AG  +  V ++ E + LR     A +     
Sbjct: 4   LVAPAGVMAVVKADAYNHGMADVARTAVDAGAAELGVATLGEALALRDAGVSAPVTAWIW 63

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTF----YSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141
           I     +   + ++   I S+  L       +     G      L VDTG +R G+S  E
Sbjct: 64  IVGEDLRGAAEQDITLGIPSLAHLEAAVTTAAGSAEAGRPLKVGLMVDTGLSRSGISPTE 123

Query: 142 AL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI--SHYKGIEA-- 194
                D    + +  L  ++ + SH A ADDP S    +Q +RF   I     +GI+A  
Sbjct: 124 WPAALDAAEAAVDAGLIDVTGLFSHFASADDPMSPTTDLQEKRFSARIGECRARGIDAPV 183

Query: 195 -SLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEARIILIRKALAGE 252
             +A++   L   +   ++ RPG+ +YG     I     ++  +T  A+++  R    GE
Sbjct: 184 NHIANTPAALSRVDLRHEMVRPGVGIYGVDPCAIPSGVELRPAMTLRAKVVTTRIVEKGE 243

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            VSYG       D   AV A+GYADG P  +SG                I G   P +G+
Sbjct: 244 GVSYGHHWIAPEDHRTAVVAMGYADGLPRAMSGNFG-----------VAIDGTWYPQIGR 292

Query: 313 ITMDMTMFDITDSLS------IEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRI-GTR 364
           + MD  + D+           +  GD+  IFG     + ++A A+GT +Y++L    G R
Sbjct: 293 VCMDQIVVDLGPVADEGPGASVRPGDWAVIFGEGGRSVREIADAAGTIDYEILTMPRGGR 352

Query: 365 YAKF 368
            A+ 
Sbjct: 353 VARR 356


>gi|219670838|ref|YP_002461273.1| alanine racemase [Desulfitobacterium hafniense DCB-2]
 gi|219541098|gb|ACL22837.1| alanine racemase [Desulfitobacterium hafniense DCB-2]
          Length = 394

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/354 (25%), Positives = 151/354 (42%), Gaps = 26/354 (7%)

Query: 7   LRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             + I+L A+ NN+  +   LS  AR  AVVK +AYGLG   +A  L   G   F VT+V
Sbjct: 4   AWIDINLDAIANNYREVTQQLSPAARVMAVVKADAYGLGAVPVAQTLQKLGCPAFAVTTV 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124
           EEG+ LR +  +  I VL  +   Q       +L   +S    L  +  + +  G+    
Sbjct: 64  EEGLILRQHGVEGIILVLGPVSAEQMAEALTGDLQLTLSDFHMLREWETVAAGLGIEAKV 123

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+++TG  R G   +E  +               + +HLA A          Q+E F+ 
Sbjct: 124 HLKLETGMGRTGFFEKEWGELAAQLKKSPHITPVGVYTHLARAAQRDRAYTRQQVESFQR 183

Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVV 236
            +       + G+   + +S+  L  P++H+   R G  L G       +  ++     V
Sbjct: 184 GVNLLEEQGFAGLWKHVCNSAAFLDYPDWHYDFIRTGTLLIGHIPAPAFAGKLKLQDPWV 243

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY-------PLTLSGLDSE 289
             +ARI+ +R+   G  V Y    +   ++ +AV  +GYADG+       P  +      
Sbjct: 244 A-KARIVSLRRVPIGTFVGYQSIYRTKAETQLAVIPVGYADGFGVQPHFVPQGVWDFIKI 302

Query: 290 HSPSVFLGGKGFI-------KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
              +     + +I       +G+ VP+ GKI M +T+ D+ +    E GD + +
Sbjct: 303 VIKNFLALCRIYIGQESVILQGHRVPVAGKIGMQLTVLDVGNLP-CETGDEVIL 355


>gi|46190837|ref|ZP_00120988.2| COG0787: Alanine racemase [Bifidobacterium longum DJO10A]
          Length = 452

 Score =  298 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 97/408 (23%), Positives = 163/408 (39%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF-Y 112
                    E + LR       R  +L  ++ G E     +   ++   + S+P +    
Sbjct: 84  TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G      ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G          +   +   +  +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTLDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|296453703|ref|YP_003660846.1| alanine racemase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183134|gb|ADH00016.1| alanine racemase [Bifidobacterium longum subsp. longum JDM301]
          Length = 452

 Score =  298 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 97/410 (23%), Positives = 164/410 (40%), Gaps = 44/410 (10%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  ++L  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVNLETMRDNMAHLVSVVGGPNSGTAVMGVVKADAYGHGLLPAALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTP---QARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF 111
                    E + LR       + RI  L  ++ G E     +   ++   + S+P +  
Sbjct: 84  TWLGTAQSHEALLLRKLGIGPDRCRI--LTWVYNGTEVPFDELIAADIDVSVGSLPGIDA 141

Query: 112 -YSKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACA 167
             +     G      ++VD+GF R G +      AL        + +  +    SHLA A
Sbjct: 142 VAAAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVA 201

Query: 168 DDPSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGIS 218
           D P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI 
Sbjct: 202 DSPDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIG 261

Query: 219 LYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
           LYG          +   +   +  +A++  ++   AG  +SYG       ++  A+  +G
Sbjct: 262 LYGYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLG 321

Query: 275 YADGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SL 326
           YADG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L
Sbjct: 322 YADGIHRSASGFDMEGAKHVEKPGGPLRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAEL 381

Query: 327 SIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            +  GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 GVHEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|189439769|ref|YP_001954850.1| slanine racemase [Bifidobacterium longum DJO10A]
 gi|189428204|gb|ACD98352.1| Alanine racemase [Bifidobacterium longum DJO10A]
          Length = 450

 Score =  298 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 97/408 (23%), Positives = 163/408 (39%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  +DL  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 22  RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 81

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTF-Y 112
                    E + LR       R  +L  ++ G E     +   ++   + S+P +    
Sbjct: 82  TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 141

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G      ++VD+GF R G +      AL        + +  +    SHLA AD 
Sbjct: 142 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 201

Query: 170 PSSHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 202 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 261

Query: 221 GGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G          +   +   +  +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 262 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTLDNTSTAIVPLGYA 321

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L +
Sbjct: 322 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 381

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 429


>gi|299139893|ref|ZP_07033065.1| alanine racemase [Acidobacterium sp. MP5ACTX8]
 gi|298598247|gb|EFI54413.1| alanine racemase [Acidobacterium sp. MP5ACTX8]
          Length = 385

 Score =  298 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 162/385 (42%), Gaps = 37/385 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            ++I    L  N+ ++ A++G      AV+K NAYG G    AP L  AG Q   V+ V 
Sbjct: 4   WIEISSARLAENFRAIQAVAGQGVEALAVIKANAYGHGTTICAPVLAEAGAQWLGVSDVA 63

Query: 67  EGVKLRLYTPQA--RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHP 123
           EG  +R   P +  R+ V+ G+       +    L PV+ +   +        S G    
Sbjct: 64  EGEAVRTALPHSGIRVLVMCGMELADAPALVAHGLTPVVWTPEHIAALERAARSAGHRIQ 123

Query: 124 YALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L+VDTG  R G +  E L        + +      I++HL C++   + +   Q ERF
Sbjct: 124 VHLEVDTGMGRQGAAPGEDLARTLEALADSRWVSCEGIMTHLCCSESAEAKITEEQRERF 183

Query: 183 -----RTLISHYKGIEASLASSSGILLGPNYHF-----------QLTRPGISLYGGTDKI 226
                + L +  +     LA++S +  G    +            + R G ++YG   +I
Sbjct: 184 ASALDQALAAGMRPEFVHLANTSAVDEGSTMQWIRDTAKSLGARAMVRIGFAIYGHCLEI 243

Query: 227 NKSHPMQ--------TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
              H            V+  + RII +R   AG  V YG     T+   +A+  +GYADG
Sbjct: 244 EGEHAHAGALAPKVSPVLVWKTRIIGLRGVAAGATVGYGATFVATQPMRLALLPVGYADG 303

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           Y    S        S    G   I G   P++G+++M++T+ D++    ++ G    + G
Sbjct: 304 YRRAAS--------SGVGNGWVMIAGRRAPVVGRVSMNLTVVDVSGHADVQEGMEAVLLG 355

Query: 339 PDIKLDDVALASGTTNYDLLVRIGT 363
             +  +D A  SGT  YD+L  I  
Sbjct: 356 EGVTAEDQARWSGTIAYDILCGIRA 380


>gi|15606873|ref|NP_214253.1| alanine racemase [Aquifex aeolicus VF5]
 gi|3913028|sp|O67687|ALR_AQUAE RecName: Full=Alanine racemase
 gi|2984113|gb|AAC07650.1| alanine racemase [Aquifex aeolicus VF5]
          Length = 338

 Score =  298 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 168/362 (46%), Gaps = 33/362 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           L+I+   +++N   ++  SG  +  AV+K +AYG+G  ++A  L     V  F V  VEE
Sbjct: 6   LEINSERIRHNVKKLSEFSGK-KVIAVIKADAYGIGSIQMAKILEPIEEVDAFAVACVEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           GV+LR    +  I +L G+   +  ++ +  L PV+S +  L              + ++
Sbjct: 65  GVELRKMGIKKEILILGGVLKDEVPLVEEYFLTPVVSDIEHLRAI-----GNRDIKFHVK 119

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            DTG  RLG       +  H+       ++  I+SHL+         + +Q+++F  ++ 
Sbjct: 120 YDTGMGRLGF----LNEVIHD------PRVEGIMSHLSSPA--DEEFSKLQIKKFEEIVK 167

Query: 188 HYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
            Y  +E   + SS+G++    +     R G+++YG     N    ++  +T +A++I ++
Sbjct: 168 KYTKVEKIHMESSAGVVYRVPFTTH-IRVGLAMYGEKPLKNYPVDIKPALTLKAKLISVK 226

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
           +      VSY       + +   V A GYADG   TLS                  KG  
Sbjct: 227 ELPENYPVSYSRTYVTKKKTKTGVVAFGYADGLMKTLSNRS-----------YLLYKGEK 275

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +PI G ITMDMT+ D+ ++   +VGD++ +   +    ++A  +GT  Y+L+  +  R  
Sbjct: 276 LPIFGNITMDMTIVDLKNT-DAKVGDWVYVVNEERTFTELAREAGTIPYELMCNLSKRIK 334

Query: 367 KF 368
           + 
Sbjct: 335 RV 336


>gi|195953382|ref|YP_002121672.1| alanine racemase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932994|gb|ACG57694.1| alanine racemase [Hydrogenobaculum sp. Y04AAS1]
          Length = 343

 Score =  298 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 175/367 (47%), Gaps = 33/367 (8%)

Query: 9   LKIDLTALKNNW-HSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTS 64
           ++I L  LK N  ++++ +  S N    AVVK NAYG+G  +++  L +   V+ F V  
Sbjct: 1   MRIVLELLKENILNNISQIYNSVNKPIIAVVKANAYGMGSAEVSKVLDDNPYVKSFAVAC 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE V+LR    +  I VL G+      + +    L PVISS  Q               
Sbjct: 61  IEEAVELREVDVKKPILVLGGVLDLKDVEYLKHYKLTPVISSAYQFDMIKNA-----GID 115

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           + +++DTG  RLG        F           L  I++HLA   D     ++ Q+++F+
Sbjct: 116 FHVKLDTGMGRLGF-------FELQEDIIGHPNLKGIMTHLASPLDKD--YSAFQIQKFK 166

Query: 184 TLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
            ++   K   IE    SS+G++   ++     R G+++YG         P++ +   +A+
Sbjct: 167 NIVKSLKRNSIEIHYQSSAGLMYEKDF-TTAIRIGLAMYGEKPYEGFDIPIKPIYKVKAK 225

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I ++    G+ +SYGG   LT+D+ I V ++GYADG P +L+                 
Sbjct: 226 VISLKNFKKGDKISYGGTYTLTKDATIGVVSMGYADGIPKSLANKWYFD----------- 274

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
             G  +P++G +TMDMTMF++ + ++I++GDY+            +    T  Y+L+ R+
Sbjct: 275 FNGAKLPMVGAVTMDMTMFELPEGVNIKIGDYVDFVNEGQTFSMASKIVKTIPYELMCRM 334

Query: 362 GTRYAKF 368
           G R  + 
Sbjct: 335 GKRVKRV 341


>gi|13475189|ref|NP_106753.1| alanine racemase [Mesorhizobium loti MAFF303099]
 gi|20137424|sp|Q98A05|ALR1_RHILO RecName: Full=Alanine racemase, biosynthetic
 gi|14025940|dbj|BAB52539.1| alanine racemase [Mesorhizobium loti MAFF303099]
          Length = 397

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 111/364 (30%), Positives = 184/364 (50%), Gaps = 18/364 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL A++ N+  ++ L G+  + AAVVK +AYGLG   IA  L +AG    FV +++E
Sbjct: 13  LEIDLAAIRANFQKISTLVGDKVKVAAVVKSDAYGLGLVDIARTLIDAGCDLLFVANLDE 72

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR    +  I V                LIPV+++         + + G    Y L 
Sbjct: 73  ALLLRSSFSRVAIAVFRDEFDRFGTWYRSHGLIPVVNN---CKELHAVGTAGEPQSYFLN 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           V+TGF+R GLS+ + +   +     +  + S+++SHLAC +  S  +N +Q +RFRT+  
Sbjct: 130 VETGFSRFGLSVGD-IQREYLLRTFERYRPSIVLSHLACGECISDPMNQLQRDRFRTVYD 188

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             K    SL++S+G+ LG +YHF + R G +LYG  +   +++P++ VV   ARI+ +R 
Sbjct: 189 LLKPTRGSLSASAGVWLGKSYHFDMVRVGSALYGIHNAGVQTNPLKPVVKLRARILDVRS 248

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AGE V YG   +  R S +A+  IGY  G P + +                       
Sbjct: 249 VPAGEAVGYGATFRTDRASRVAIVGIGYKHGLPWSCANKIFVRLAEYS-----------A 297

Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P +G+I+M+  + DITD  +     G + ++   D  ++D+  A+G +  + L R+G   
Sbjct: 298 PSIGRISMEYMIIDITDVPARRCSPGTFAELLSEDFTVNDLGAAAGVSPQEALTRLGAGC 357

Query: 366 AKFY 369
            + Y
Sbjct: 358 TRKY 361


>gi|224283464|ref|ZP_03646786.1| alanine racemase [Bifidobacterium bifidum NCIMB 41171]
 gi|311064700|ref|YP_003971425.1| alanine racemase [Bifidobacterium bifidum PRL2010]
 gi|313140617|ref|ZP_07802810.1| alanine racemase [Bifidobacterium bifidum NCIMB 41171]
 gi|310867019|gb|ADP36388.1| Alr Alanine racemase [Bifidobacterium bifidum PRL2010]
 gi|313133127|gb|EFR50744.1| alanine racemase [Bifidobacterium bifidum NCIMB 41171]
          Length = 452

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/406 (24%), Positives = 164/406 (40%), Gaps = 44/406 (10%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             +  +DL  L++N   +  + G          VVK +AYG G    A A    G     
Sbjct: 28  PAQAIVDLATLRDNMAHLVDVVGGPHSGTAVMGVVKADAYGHGLLPAALAALAGGATWLG 87

Query: 62  VTSVEEGVKLRLYTP---QARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYS-K 114
                E + LR       + RI  L  ++ G +     + D ++   + S+  +   +  
Sbjct: 88  TAQSHEALLLRKLGIGPDRCRI--LTWVYNGMDVPFDELIDNDIDISVGSLAGIDALADA 145

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
               G      ++VD+GF R G +      AL       ++ +  +    SHLA AD P 
Sbjct: 146 ARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAHEGVLHIVGQWSHLAVADSPD 205

Query: 172 SHV----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGG 222
                     Q+E F       +  GI      LA+++  L  P  H +LTRPGI LYG 
Sbjct: 206 VPEFVASTDRQIESFTEFTRRMEAAGIAPEIRHLANTAATLNRPEIHLELTRPGIGLYGY 265

Query: 223 TDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
                    +   ++  +T +A++  ++   AG  VSYG       ++  A+  +GYADG
Sbjct: 266 EPDPAMGTPRDWHLKPAMTLQAQLGTVKDVEAGHGVSYGRTYLTPDNTSTAIVPLGYADG 325

Query: 279 YPLTLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITD---SLSIEV 330
              + SG D + +  V   GG   +     P    + G++ MD  + D+      L +  
Sbjct: 326 IHRSASGFDMQGAKHVEKAGGPVRVMTSAGPRLLHVCGRVCMDQFIVDLHGSAAELGVHE 385

Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 386 GDTVELFGPGRGEQYGEPTADDWARAADTISYEVFTCLRNRIPRLY 431


>gi|218288214|ref|ZP_03492513.1| alanine racemase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241573|gb|EED08746.1| alanine racemase [Alicyclobacillus acidocaldarius LAA1]
          Length = 400

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/401 (23%), Positives = 165/401 (41%), Gaps = 61/401 (15%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             L   IDL  L +N   +   L         VK +AYG G   +   L   GV+   V 
Sbjct: 3   RPLFAVIDLGHLSHNIRYLQSRLRPGTSLMVAVKADAYGHGVRAVVDRLAREGVRQVAVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           S+EE +++R +     I VL  + P       +  +   ++ +   +   ++        
Sbjct: 63  SIEEALEIRAFDRDVNILVLGAVTPDACMKAAEAEVEIALTDL---SPIDEIPRLPKRLR 119

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L +DTG NRLG+    EA+        ++  +L    +HLA AD       + Q+ER 
Sbjct: 120 VHLPLDTGMNRLGVKRTDEAVALARAIAAREDLELVGAGTHLAAADAEDPAHAAGQMERL 179

Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235
           +  +     +  +       +S+ +L  P++H  + R GI+ YG +   +   +  ++ V
Sbjct: 180 KAFVRALEAAGLRPPRIHAGNSAALLRDPDWHLDMVRVGIAAYGYSPDPSVLPAPSLRPV 239

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  A ++ + +A AGE V YG    +TR  +IA  A GYADGYP  LS           
Sbjct: 240 MSLYAGVLRVAQAEAGETVGYGATFVVTRPMVIATVAGGYADGYPRHLSNE--------- 290

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL------------ 343
             G+  ++G + P++G++ MD  M D+T  L +  GD + +FG D               
Sbjct: 291 --GEVLVRGELRPVIGRVCMDQLMVDVTG-LDVATGDVVALFGYDPPALWRAGWWNRLRP 347

Query: 344 DD-------------------------VALASGTTNYDLLV 359
           +D                         +A  + T  Y++L 
Sbjct: 348 EDRIARVQETYRMASNSEERRVLSLHRLAERAQTIPYEILC 388


>gi|218295810|ref|ZP_03496590.1| alanine racemase [Thermus aquaticus Y51MC23]
 gi|218243548|gb|EED10076.1| alanine racemase [Thermus aquaticus Y51MC23]
          Length = 361

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/369 (26%), Positives = 159/369 (43%), Gaps = 29/369 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              +++DL AL  N+  + A +       V+K +AYG G   IA  L   GV  F V ++
Sbjct: 5   RAWIEVDLGALWANYLLLKARAQG-EVIPVLKADAYGHGALPIARFLEERGVGRFAVATI 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
            EG  LR    +  + +L  +HP + +      L P +S++      ++   + G++   
Sbjct: 64  AEGRALREGGVRGEVLLLGSLHPLEAEAALRWGLTPTLSTLEAARALAERAWALGLTPRA 123

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG NR+G   +EAL          + ++  + SHLA A +       VQ  RF+ 
Sbjct: 124 HLKVDTGMNRVGFPWEEALAALRAVEALGV-RVEGVYSHLATAGE-DEAFVEVQRGRFQR 181

Query: 185 LISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
           +      G    L +S G+LL      +  R G++LYG          ++ V+   AR  
Sbjct: 182 VREALGPGYFYHLENSYGLLLH---GGENARVGLALYGLVP----GFGLRPVLRLLARPT 234

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           L+++  AG+ V YGG         +A   +GYADG P              F+ G G   
Sbjct: 235 LVKRLKAGDRVGYGGAFVAQGGEWLATLPVGYADGLPR---------GAVAFVRGPG--- 282

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD---DVALASGTTNYDLLVR 360
           G    + G+I+MD T   +     +++    ++  PD         A A GT  Y++ V 
Sbjct: 283 GERFRVAGRISMDQTTVLLPG--PVDLWAVFEVLSPDFGPTGLLAWAEARGTIPYEVAVH 340

Query: 361 IGTRYAKFY 369
           +  R  + Y
Sbjct: 341 LSRRLPRVY 349


>gi|258510371|ref|YP_003183805.1| alanine racemase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477097|gb|ACV57416.1| alanine racemase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 400

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 95/401 (23%), Positives = 160/401 (39%), Gaps = 61/401 (15%)

Query: 5   EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             L   IDL  L +N   +   L   A     VK +AYG G   +   L   GV    V 
Sbjct: 3   RPLFAVIDLAHLSHNIRYLKSRLRPGASLMVAVKADAYGHGVRAVVGRLVREGVHHVAVA 62

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           S+EE +++R +     I VL  + P       +  +   ++ +   +   ++        
Sbjct: 63  SLEEALEIRAFHRGVNILVLGAVTPDACMKAAEAEVEIALTDL---SPIDEIPRLPKRLR 119

Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             L +DTG NRLG+    EA+        ++  +L    +HLA AD       + Q+ER 
Sbjct: 120 VHLPLDTGMNRLGVKRTDEAVALARAIAKREDLELVGAGTHLAAADAEDPAHAAGQMERL 179

Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235
              +     +  +       +S+ +L  P +H  + R GI+ YG +   +   +  ++ V
Sbjct: 180 GAFVRALEQAGLRPPRIHAGNSAALLRNPAWHLDMVRVGIAAYGYSPDPSVLPAPSLRPV 239

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  A ++ + +A  GE V YG    +TR   IA  A GYADGYP  LS           
Sbjct: 240 MSLYAGVLRVAQAQPGETVGYGATFTVTRPMTIATVAGGYADGYPRHLSNE--------- 290

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL------------ 343
             G+  ++G   P++G++ MD  M D+T  L +  GD + +FG D               
Sbjct: 291 --GEVLVRGEFRPVIGRVCMDQLMVDVTG-LDVATGDVVALFGYDAPALWRAGWWSRLRP 347

Query: 344 DD-------------------------VALASGTTNYDLLV 359
           ++                         +A  + T  Y++L 
Sbjct: 348 EERVARVQETYRMASNLGERRVLSLHRLAERAQTIPYEILC 388


>gi|28189428|dbj|BAC56127.1| alanine racemase [Bifidobacterium bifidum]
          Length = 452

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/406 (23%), Positives = 162/406 (39%), Gaps = 44/406 (10%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             +  +DL  L++N   +  + G          VVK +AYG G    A A    G     
Sbjct: 28  PAQAIVDLATLRDNMAHLVDVVGGPHSGTAVMGVVKADAYGHGLLPAALAALAGGATWLG 87

Query: 62  VTSVEEGVKLRLYTP---QARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYS-K 114
                E + LR       + RI  L  ++ G +     + D ++   + S+  +   +  
Sbjct: 88  TAQSHEALLLRKLGIGPDRCRI--LTWVYNGMDVPFDELIDNDIDISVGSLAGIDALADA 145

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
               G      ++VD+GF R G +      AL       ++ +  +    SHLA A+ P 
Sbjct: 146 ARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAHEGVLHIVGQWSHLAVAELPD 205

Query: 172 SHV----NSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGG 222
                     Q+E F          GI      LA+++  L     HF++TRPGI LYG 
Sbjct: 206 VPEFVASTDRQIELFTEFTRCMEAAGIAPEISHLANTAATLNRSEIHFEMTRPGIGLYGY 265

Query: 223 TDKINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
                   P     +  +T +A++  ++   AG  VSYG       ++  A+  +GYADG
Sbjct: 266 EPDPAMGTPREWHLKPAMTLQAQLGTVKDVEAGHGVSYGRTYLTPDNTSTAIVPLGYADG 325

Query: 279 YPLTLSGLDSEHSPSVFL-GGKGFIKGYMVP----ILGKITMDMTMFDITD---SLSIEV 330
              + SG D + +  V   GG   +     P    + G++ MD  + D+      L +  
Sbjct: 326 IHRSASGFDMQGAKHVEKAGGPVRVMTSAGPRLLHVCGRVCMDQFIVDLHGSAAELGVHE 385

Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           GD +++FGP       +   DD A A+ T +Y++   +  R  + Y
Sbjct: 386 GDTVELFGPGRGEQYGEPTADDWARAADTISYEVFTCLRNRIPRLY 431


>gi|20137249|sp|Q9RVE3|ALR_DEIRA RecName: Full=Alanine racemase
          Length = 351

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 164/364 (45%), Gaps = 25/364 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67
             I   AL +N  ++   SG  R    VK +AYG G E +         V    V + +E
Sbjct: 7   AHISAAALDHNLSALAQRSG-TRLLLPVKADAYGHGMELVGRLAAAHPDVWGLAVATPQE 65

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              L        + +L    P +   + D  +   +S++ ++                L+
Sbjct: 66  AETLARLDLGKPLLLLTPPAPEELGALADLGVRLPVSTLAEVEALPAHAQA------HLK 119

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG NRLG    +A+        +  GQL  + +H A AD+P       QL RFR+++ 
Sbjct: 120 VDTGMNRLGARPADAVAVGRALAER--GQLEGVYTHFATADEPDLSFALTQLVRFRSVLD 177

Query: 188 HYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTDK-INKSHPMQTVVTAEARIILI 245
               + A  A+  G+L  G      L RPG++ YG   + +     ++ V+T  AR+  +
Sbjct: 178 ALPPVLAHCANGGGVLSFGRIEGMSLARPGLAAYGYVPEHLRHVCALRPVMTVRARVNQL 237

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
             A  GE VSYG   +  R++ +AV  +GYADGYP   +G  +             I G 
Sbjct: 238 HTAYPGETVSYGALWRAERETGVAVVGMGYADGYPRNATGRAA-----------VLIGGE 286

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIGTR 364
             P+LG+I MD  M D+T  L + VGD+ +++G  D+ + DVA    T  Y++L  +G+R
Sbjct: 287 RRPVLGRICMDQMMVDVTG-LDVGVGDWAELWGEGDLSVTDVARWGDTIEYEVLTGLGSR 345

Query: 365 YAKF 368
             + 
Sbjct: 346 VERR 349


>gi|320451536|ref|YP_004203632.1| alanine racemase [Thermus scotoductus SA-01]
 gi|320151705|gb|ADW23083.1| alanine racemase [Thermus scotoductus SA-01]
          Length = 366

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 95/369 (25%), Positives = 164/369 (44%), Gaps = 29/369 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              +++DL AL+ NW  + A +       V+K  AYG G   +A  L+  G +   V +V
Sbjct: 11  RAWIEVDLKALEANWLLLKAKARG-EVIPVLKAEAYGHGALPLARFLFQKGARWVAVATV 69

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPY 124
            EG  LR    +  I +L  +HP + + +   NL+P +S++      + +  + G++   
Sbjct: 70  SEGRTLREGGVEGEILLLGSLHPLEAEEVLRLNLLPTLSTLEAAQALAGRARALGLTPRA 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG NR+G   ++A D           ++  + +HLA A +       VQ  RF+ 
Sbjct: 130 HLKVDTGMNRVGFPWEKAKDALLAVEAL-GIRVEGVYTHLATASE-DEAFVEVQRSRFQR 187

Query: 185 LISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
           +     +G    L +S G+LL      +  R G++LYG          ++ ++   AR  
Sbjct: 188 VREALGEGYFYHLENSYGLLLH---GGENVRVGLALYGLIP----GFSLKPILRLLARPT 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           L+++   G+ V YGG+        +    +GYADG P              F+ G    +
Sbjct: 241 LVKQLGPGDRVGYGGEYVARGGEWLLTLPVGYADGLPR---------GAVRFVKGP---E 288

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD---DVALASGTTNYDLLVR 360
           G + P+ G+I+MD T       L +E    +++  PD         A A GT  Y++ V 
Sbjct: 289 GGLYPVAGRISMDQTTVLSPGPLPLEA--VLEVLSPDFGPTGLCAWAEARGTIPYEVAVH 346

Query: 361 IGTRYAKFY 369
           +  R+ + Y
Sbjct: 347 LSRRFPRVY 355


>gi|288919620|ref|ZP_06413949.1| alanine racemase [Frankia sp. EUN1f]
 gi|288349018|gb|EFC83266.1| alanine racemase [Frankia sp. EUN1f]
          Length = 393

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 141/381 (37%), Gaps = 37/381 (9%)

Query: 9   LKIDLTALKNNWH---SMNALSGNA---RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           L +D+ A+  N     ++   +G        AVVK + YG G   +A A    G   F V
Sbjct: 16  LTLDVAAVTANVRTISAIRRQAGACGAGEVMAVVKADGYGHGLADVARAALAGGATRFGV 75

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           TSV E   LR       +                  +   +   P       +       
Sbjct: 76  TSVAEAYTLRDLGFTEPVLSWLNPVDADFTQATRAGVELAV---PSHAHLRAVARQTPGA 132

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQL 179
              LQ+DTG  R G   ++     H +   +      +  ++ HLACA +P    N    
Sbjct: 133 GVHLQLDTGMARDGAPPEQWESLCHTARCAERAGFVHVVGVMGHLACAAEPGHPANRRGR 192

Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           E F   +     +  +  +  LA+++  L  P  H  L+R G  L G  +    S  ++ 
Sbjct: 193 ECFDWGVRVALGAGLRPRDRHLAATAATLSDPRTHHSLSRIGAGLVGIDES--GSVRLRP 250

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   A ++ +R   AG  V YG      R + + +  +GYADG P   +          
Sbjct: 251 ALRLTAPLVTVRAVPAGTAVGYGHTWTSPRATRLGLVPVGYADGLPRCAAARAQVQVA-- 308

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL---SIEVGDYIQIFGP----DIKLDDVA 347
                    G    ++G+++MDMT+ D+           GD + +FGP    +    D A
Sbjct: 309 ---------GVRRRVVGRLSMDMTVVDLGPDPAACPARAGDVVTLFGPGDGGEPTAADWA 359

Query: 348 LASGTTNYDLLVRIGTRYAKF 368
             + T  ++++  +G R  + 
Sbjct: 360 RWAATLEHEIVTGLGPRLRRV 380


>gi|284042496|ref|YP_003392836.1| alanine racemase [Conexibacter woesei DSM 14684]
 gi|283946717|gb|ADB49461.1| alanine racemase [Conexibacter woesei DSM 14684]
          Length = 368

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 158/378 (41%), Gaps = 25/378 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   R  +DL A++ N   +   +  +    AVVK + YG G   +A A    G +   V
Sbjct: 2   SRRARAHVDLGAVERNARRLRGCAAADVLLCAVVKADGYGHGAVAVARAALAGGARWLAV 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            + +E V LR   P+  I VL  +               V++  P+    ++ ++     
Sbjct: 62  ATADEAVALRRELPEPPILVLGALDEPDLARALGVG-ADVVAWTPEFVRCAEALAGNGGA 120

Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
              ++VDTG  RLG  S +EAL            +L  +++H A AD   +H  + QL  
Sbjct: 121 RLHVKVDTGMGRLGARSREEALALAELIDRVAGVRLCGVMTHFATADAGDAHF-AAQLAS 179

Query: 182 FRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TV 235
           F  +     + + G+    A+S+ +L  P  HF + R G++LYG           +    
Sbjct: 180 FSAIAGVVRARHPGVLVHAANSAAVLRAPAAHFDMVRCGVALYGLDPFQRDPAAARLEPA 239

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +   + +  + +   GE V YG + + +  + +A   IGYADG   T  G          
Sbjct: 240 LELRSYVARVARVEPGEAVGYGARFRPSAPTWVATVPIGYADGVRRTTGG---------- 289

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
            G    I G   P+ G ++MD    D      +  GD + + G      I  +++A   G
Sbjct: 290 -GVDVLIGGRRRPLAGTVSMDSLGVDAGSHGDVRAGDEVVLIGARGRERILAEELAARHG 348

Query: 352 TTNYDLLVRIGTRYAKFY 369
           T NY++L  +G+R  + Y
Sbjct: 349 TINYEVLCALGSRVERVY 366


>gi|149184540|ref|ZP_01862858.1| alanine racemase [Erythrobacter sp. SD-21]
 gi|148831860|gb|EDL50293.1| alanine racemase [Erythrobacter sp. SD-21]
          Length = 345

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 193/362 (53%), Gaps = 26/362 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL +D  AL  NW +++ +SG+AR  A VK + YGLG E   P L +AG  DFFV    
Sbjct: 9   LRLDLDREALAANWRALDRMSGSARAGAAVKADCYGLGVEHCVPVLRDAGCGDFFVAHWS 68

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   +  +   A++ VL+G   G E     +T  +PVI SV Q   +++        P  
Sbjct: 69  EVAAVVEHVDAAQVAVLHGPLDGNEVAYARETGALPVIDSVRQAKLWAE----SGGGPCH 124

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VD+G NRLG+S QE  +    + +     + +++SHLACAD+  S +N+ QLE FR  
Sbjct: 125 LMVDSGINRLGISPQEISNPVVQALD-----VQVLLSHLACADE-DSPMNARQLETFRDA 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
           I   +  E SLA+S+GI LG +YHF LTRPG++LYGG  +   +  +  VV  +A II  
Sbjct: 179 IQRVEHCETSLANSAGIALGSDYHFDLTRPGLALYGGVPRPELADHIGQVVFPKAAIIQT 238

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AG+ V Y        +  + V ++GYADG   +  G                    
Sbjct: 239 RQLSAGDGVGYNATFTAPVEMRVGVLSLGYADGILRSWGGAAFRSGE------------K 286

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            +PILGK++MDM + D++D+  +  GD++++      L D A  +  T Y+LL  +G R+
Sbjct: 287 RLPILGKVSMDMIVIDLSDAPELGEGDWVEL---PYHLPDAAQQTSLTQYELLTVLGNRF 343

Query: 366 AK 367
           A+
Sbjct: 344 AR 345


>gi|238927300|ref|ZP_04659060.1| possible alanine racemase [Selenomonas flueggei ATCC 43531]
 gi|238884887|gb|EEQ48525.1| possible alanine racemase [Selenomonas flueggei ATCC 43531]
          Length = 283

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 21/292 (7%)

Query: 87  HPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
            P   + + D ++   +  +  +   S + +  G +    L ++TG  R+G+  ++A + 
Sbjct: 2   EPESAREVVDGDITQTVCRMDLVEALSQEAVRQGKTVKVHLTIETGMGRIGVHPKDAAET 61

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK--GIEA---SLASSS 200
                     +L  I SH A AD P       Q++ F+      +  GI      +A S+
Sbjct: 62  AKKIAALPNVELEGIFSHFALADIPDKTFTKQQVKLFKDACDAIEAAGIHIPIKHIAESA 121

Query: 201 GILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
            IL  P+ HF + R GI  YG   +D++ +   ++  +   ARI+ I+    GE V YG 
Sbjct: 122 AILEIPDVHFDMVRAGIIQYGLWPSDEVTRPIDLRPCMKFCARIVYIKTIQPGESVGYGR 181

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
           +    R++ IA   +GYADGY               + GG   + G   PI G++ MD  
Sbjct: 182 KFIAERETRIATLPVGYADGYIRA------------YAGGSVEVCGKRAPIAGRVCMDQF 229

Query: 319 MFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           M D+TD    ++GD   +FG D +  D++A  + T NY+++  +  R  + Y
Sbjct: 230 MIDVTDIPEAKLGDVCTLFGSDSLTADEIAGWANTINYEVVCLVSERVPRVY 281


>gi|332638810|ref|ZP_08417673.1| alanine racemase [Weissella cibaria KACC 11862]
          Length = 371

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 144/375 (38%), Gaps = 26/375 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              RL I   A+ +N   +   S  +     VK NAYG G   ++ A    G+    V  
Sbjct: 7   RPTRLNISQAAVTHNIQEVRQASQASFMFLAVKANAYGFGLIPMSQAAVAGGIDGLAVAL 66

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHP 123
           ++EG+ LR         +L    P   ++I + NLI  + S+  L    + +   G    
Sbjct: 67  LDEGLALRQAGLTEPTLILGITLPQYARLIAENNLIATVGSLAWLEAALQYLPVNGQRLQ 126

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLER 181
             L VDTG  R+G   +  L+      ++     +   I++H A AD P       QL R
Sbjct: 127 VNLAVDTGMGRIGFRERTELEAAIAFMDEHREAFTYASIMTHFAEADAPEVDYFHQQLNR 186

Query: 182 FRTLISHYKGIE-ASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236
           +  L    +      LA+S   +         + R G  +YG      +      ++ V+
Sbjct: 187 WHALTDGIEMPPLVHLANSGAAMYHADEMPTDVIRAGTVVYGVEPSRGELRSDDYLEPVL 246

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T E  ++ ++K   GE VSYG          I    +GY DG P  L G           
Sbjct: 247 TLETELVFVKKCHEGEGVSYGHTYYAHEGEWIGTVPLGYGDGLPRKLQGF---------- 296

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
             +  + G   PI+GK+ MD  M  +     + +G  + I G     +  L+DV   +  
Sbjct: 297 --EVIVDGVKRPIVGKLAMDQMMISLP--YELPIGTTVTIIGRQGEQENTLEDVGQYTDL 352

Query: 353 TNYDLLVRIGTRYAK 367
             +++   +  R  +
Sbjct: 353 APWEISTNLQERIYR 367


>gi|319943626|ref|ZP_08017907.1| alanine racemase [Lautropia mirabilis ATCC 51599]
 gi|319742859|gb|EFV95265.1| alanine racemase [Lautropia mirabilis ATCC 51599]
          Length = 386

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 144/378 (38%), Gaps = 42/378 (11%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS----------GNARTAAVVKDNAYGLGCEKIAPALYN 54
             L   +  +A+ +N   +               + R  AVVK +AYG G          
Sbjct: 17  RTLTASVSPSAMAHNLALIRRQVQENRPDGHVQADTRLWAVVKADAYGHGLANALTGFAE 76

Query: 55  AGVQDFFVTSVE-EGVK-LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTF 111
           A      +  +E E    LR +     I +L G     +        L   I     L +
Sbjct: 77  AD----GMALLEFEAADWLRRHGWTKPILMLEGAFDATDVAQAAAQGLTLAIHQPRHLQW 132

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
            +     G      L+++TG NRLGL   +   +          +L  +++H A AD P 
Sbjct: 133 LAA--HDGPPVDVYLKLNTGLNRLGLKPDDVDAYLTQVLATPGVRLRGMMTHFANADTPG 190

Query: 172 SHVNSVQLERFRTLISHYKG-------IEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
             +    L  F  +    +        +E  +A+S+ +   P  +    RPGI+LYG + 
Sbjct: 191 GALQP--LATFDAVARAVQARLPAGQTLEHCVANSAALFTLPQAYRAWARPGIALYGASP 248

Query: 225 KINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
              +S     ++  +     ++ +++   GE   YGG     +   + +   GYADGYP 
Sbjct: 249 FAGQSAASLGLRPAMQLTGNVLGVQQLTPGEATGYGGIFVAEQPVRVGIVNCGYADGYPR 308

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341
                          G    + G     LG+++MDM   D+T       G  ++++G  +
Sbjct: 309 -----------VAPTGTPVVVDGVRTRTLGRVSMDMLAVDLTPIPDAGPGTPVELWGDAV 357

Query: 342 KLDDVALASGTTNYDLLV 359
            +D+VA ++GT  Y+L+ 
Sbjct: 358 SIDEVAESAGTLGYELMC 375


>gi|323486703|ref|ZP_08092024.1| alanine racemase [Clostridium symbiosum WAL-14163]
 gi|323400084|gb|EGA92461.1| alanine racemase [Clostridium symbiosum WAL-14163]
          Length = 375

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 152/385 (39%), Gaps = 28/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPAL-YNAGVQ 58
           M+      + IDL  +K+N   +      +     V+K NA G G  + +  L    G++
Sbjct: 1   MNETGNSFITIDLAKIKSNMEKIRNHVGPDVEIMPVLKANACGHGLIRTSDWLVKECGIK 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
              V  V E  +LR    QA I VL G+           NLI  +         S L   
Sbjct: 61  RLAVAQVREAEQLRRAGSQAEIMVLGGVPVNNLPYAVQENLILPVFRTQDAALLSALAQE 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +    +++DTG  R+G+   ++  +        K  ++  + +H   A+        
Sbjct: 121 NGRTARVHIKIDTGLGRIGVEKGEQLEELLDGILPLKGLEIEGVFTHFGEAEVTDPEFTK 180

Query: 177 VQLERFRTLISH--YKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH- 230
           +Q+ RF   +     +GI+       ++   +     H+ + R G+   G    +++ + 
Sbjct: 181 IQISRFEEALGQIRARGIQPRYIHATNTPSTVRFKKAHYNMIRTGLLWLGYDPCLDEDNR 240

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++TV+  +  +   +  L+G  + Y       RD+++ +A  GY DGY   L      
Sbjct: 241 LGLETVLEWKTFLTNKKYVLSGRSMGYWRSFTAKRDTVVGIACFGYGDGYLEDLG----- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                  GG   I G   PI+  + MD T  DITD    E+GD + + G D    I   D
Sbjct: 296 -----KKGGYVLIHGKRAPIIS-VCMDQTFLDITDIPEAEIGDTVTLIGHDGGEKIDAFD 349

Query: 346 VALASGTTNYDL-LVRIGTRYAKFY 369
           +   +   +Y + L  I  R  + Y
Sbjct: 350 MEKLTE-NSYVVYLCNISERPVRIY 373


>gi|254221103|pdb|3HUR|A Chain A, Crystal Structure Of Alanine Racemase From Oenococcus Oeni
          Length = 395

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 158/386 (40%), Gaps = 36/386 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFV 62
           +    + +DL A  +N   +   +   +  AV+K + YGLG   +A A    A      V
Sbjct: 7   HRPTWVSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIV 66

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I+VL        K+  D +++  I S+    +   L     + 
Sbjct: 67  SNLDEALELRQADLTLPIWVLGAWDYSDLKLFIDHDIVITIPSL---AWLQNLPDFEGTL 123

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACAD---DPSSHVNSVQ 178
             +L +DTG  R+G    + +       +K     L  + +H A AD   + S      Q
Sbjct: 124 KVSLAIDTGMTRIGFDKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQ 183

Query: 179 LERFRTLI--SHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYG-----GTDKINK 228
           L R++ L     +     S+A+S+  +     P   F   RPG  + G     G  K+  
Sbjct: 184 LRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPP 243

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++ + +  + I  +R     + +SYG  +++  D  +A    GY DG+   +     
Sbjct: 244 NLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQKSS- 302

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        I G  +PI+G+ITMD TM  +       +G  + + G D    I ++
Sbjct: 303 -----------VIINGKRMPIIGRITMDQTMVKLDRKYP--IGTRVTLIGKDGGEQITVE 349

Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370
           +VA  S T   ++   +  R  + YT
Sbjct: 350 EVANYSHTIVDEIQTTLAPRIKRIYT 375


>gi|284043349|ref|YP_003393689.1| alanine racemase [Conexibacter woesei DSM 14684]
 gi|283947570|gb|ADB50314.1| alanine racemase [Conexibacter woesei DSM 14684]
          Length = 392

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 148/379 (39%), Gaps = 30/379 (7%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +++L A++ N   +   +  +    A VK N YG G  + A A    G     V +  E
Sbjct: 19  ARVNLAAIERNCALIRREIGADVALCAAVKANGYGHGAVQSARAAVAGGATWLAVATGGE 78

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV------S 121
             +LR     AR+ VL  + P +     D +   V  +   +   +              
Sbjct: 79  AAELRAARLDARLIVLGALAPEELDEALDADADVVAWNERFVEQLATAAGARAAATAAPP 138

Query: 122 HPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               L++D G  RLG     E L            +L+  ++H  CAD+    +   QL 
Sbjct: 139 IRVHLKLDVGMGRLGTRDADELLRVADRVAAAPGLELAGAMTHFPCADE-DVALTRGQLA 197

Query: 181 RF----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQT 234
            F      L + + G+    A+S+  L  P     L R GI++YG +   +   +H ++ 
Sbjct: 198 AFTAFGERLRAAHPGVLLHAANSAAALALPESRLDLVRCGIAVYGLSPWEDDATAHGLEP 257

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +  ++   AGE V YG + +    + IA   IGY DG                
Sbjct: 258 ALELRSWVAALKPLAAGETVGYGARFRAQAPTWIATLPIGYGDGVRRG-----------W 306

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
              G   + G   P++G+++MD    D+     + +GD   + G      +  ++VA   
Sbjct: 307 ERDGVALLGGRRRPLVGRVSMDNVTVDVGPEPGVALGDPAILIGAAGEERLTAEEVARRL 366

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           GT NY+++  +  R  + Y
Sbjct: 367 GTINYEVVTALSARVVRAY 385


>gi|116491612|ref|YP_811156.1| alanine racemase [Oenococcus oeni PSU-1]
 gi|116092337|gb|ABJ57491.1| alanine racemase [Oenococcus oeni PSU-1]
          Length = 386

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 158/386 (40%), Gaps = 36/386 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFV 62
           +    + +DL A  +N   +   +   +  AV+K + YGLG   +A A    A      V
Sbjct: 6   HRPTWVSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I+VL        K+  D +++  I S+    +   L     + 
Sbjct: 66  SNLDEALELRQADLTLPIWVLGAWDYSDLKLFIDHDIVITIPSL---AWLQNLPDFEGTL 122

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACAD---DPSSHVNSVQ 178
             +L +DTG  R+G    + +       +K     L  + +H A AD   + S      Q
Sbjct: 123 KVSLAIDTGMTRIGFDKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQ 182

Query: 179 LERFRTLI--SHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYG-----GTDKINK 228
           L R++ L     +     S+A+S+  +     P   F   RPG  + G     G  K+  
Sbjct: 183 LRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPP 242

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++ + +  + I  +R     + +SYG  +++  D  +A    GY DG+   +     
Sbjct: 243 NLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQKSS- 301

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        I G  +PI+G+ITMD TM  +       +G  + + G D    I ++
Sbjct: 302 -----------VIINGKRMPIIGRITMDQTMVKLDRKYP--IGTRVTLIGKDGGEQITVE 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370
           +VA  S T   ++   +  R  + YT
Sbjct: 349 EVANYSHTIVDEIQTTLAPRIKRIYT 374


>gi|317471394|ref|ZP_07930748.1| alanine racemase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901145|gb|EFV23105.1| alanine racemase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 294

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 25/290 (8%)

Query: 94  IFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFN 151
           +    +   + S       SK   +        ++VDTG NR+G    +E++        
Sbjct: 1   MIQHEIEQTVFSYEMAEAISKFAVTMKKDARIHIKVDTGMNRIGFKPTEESVGQVQRIQK 60

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SLASSSGILLGP 206
               ++  I +H ACAD+        Q E F   +S    KGIE     +++S+ I+   
Sbjct: 61  LPNIKIQGIFTHFACADEKDKTSARHQKELFDQFVSKIEEKGIEIPVKHVSNSAAIMDLR 120

Query: 207 NYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
                + R GI  YG             ++  ++  + +I +++   GE VSYG      
Sbjct: 121 ECRMDMVRSGIITYGLYPSEEVDKSAIDLKPALSLISHVIHVKEVGPGEGVSYGSTFVTD 180

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
           R + IA   +GYADGYP  LS             G+  I+G   PI+G+I MD  M D+T
Sbjct: 181 RKTRIATIPVGYADGYPRALSSR-----------GRVIIRGQYAPIIGRICMDQFMVDVT 229

Query: 324 DSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D   + V D + + G     +I +++ A  +G+ NY+ +  IG R  + Y
Sbjct: 230 DIEGVSVMDRVTLVGTEGDKNISVEEAADLAGSFNYEFVCGIGKRVPRVY 279


>gi|332185497|ref|ZP_08387245.1| alanine racemase [Sphingomonas sp. S17]
 gi|332014475|gb|EGI56532.1| alanine racemase [Sphingomonas sp. S17]
          Length = 342

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 184/367 (50%), Gaps = 26/367 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M     LRL+ID  AL++NW +++ LSG A   A VK N YGLG   +A AL  AG +DF
Sbjct: 1   MEIPAPLRLRIDRDALQSNWQALDRLSGTAACGAAVKANGYGLGATLVAKALAEAGCRDF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           FV +  E + L        + VL+G+     ++       PV+S+  Q+  +        
Sbjct: 61  FVANWAEALALAPLGLT--VSVLHGLRADDVEVARAGFARPVLSTPEQIARW----RDSG 114

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                + VDTG NRLG+S++               Q+  ++SHLACAD+    +N+ Q  
Sbjct: 115 GGLCDVMVDTGMNRLGVSVE-----AVTGGLLDGLQIETLLSHLACADE-DVPMNARQQA 168

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
            F  L         SLA+S+GI LG +Y F LTRPG++LYGG  + + +  ++ V   EA
Sbjct: 169 AFAGLKGQTGARRMSLANSAGIGLGADYRFDLTRPGLALYGGVPRPDMAQHLRQVAWPEA 228

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +I+  R   AGE V Y        D+ +A+  +GYADGY   LSGL           G  
Sbjct: 229 QILQRRHVPAGETVGYNATWTAPADTEVAILNLGYADGYRRALSGL-----------GAA 277

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            + G  +P+LG+++MD+   ++T    +  GD+      D  L   + ASG + Y+LL  
Sbjct: 278 VVDGVKLPVLGRVSMDLLAINVTARADLAEGDW---LSMDYDLAAASAASGVSQYELLTG 334

Query: 361 IGTRYAK 367
           +  R+A+
Sbjct: 335 LAQRFAR 341


>gi|213692856|ref|YP_002323442.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524317|gb|ACJ53064.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 452

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 92/408 (22%), Positives = 159/408 (38%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  ++L  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 24  RRQYPAQAIVNLKTMRDNMAHLVSVVGGPTSGTAVMGVVKADAYGHGLLPTALAALAGGA 83

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQEK---IIFDTNLIPVISSVPQLT-FY 112
                    E + LR       R  +L  ++ G       +   ++   + S+  +    
Sbjct: 84  TWLGTAQSHEALLLRRLGIGPDRCHILTWVYNGAAAPFDDLIAADIDVSVGSLSGIEALA 143

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G      ++VD+GF R G +      AL        + + ++    SHLA AD 
Sbjct: 144 AAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAALVPLAKEGVLRIVGQWSHLAVADS 203

Query: 170 PSSHV----NSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+  F+         GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 204 PDVPEFVASTDQQIATFKDFTRRMELAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263

Query: 221 GGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G          +   +   +  +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L +
Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTAEGPRLYRVCGRVCMDQFIVDLHGSAAELGV 383

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FG        +   DD A A+ T +Y++   +  R  + Y
Sbjct: 384 HEGDTVELFGAGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431


>gi|229823671|ref|ZP_04449740.1| hypothetical protein GCWU000282_00972 [Catonella morbi ATCC 51271]
 gi|229786908|gb|EEP23022.1| hypothetical protein GCWU000282_00972 [Catonella morbi ATCC 51271]
          Length = 387

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 90/388 (23%), Positives = 157/388 (40%), Gaps = 35/388 (9%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +      I+L A+++N   M      +    AVVK NAYG G   +A A   AG Q   
Sbjct: 6   EHRPTVAIINLNAIQHNVREMKRHLEPDQALYAVVKANAYGHGAVAVAKAALAAGAQGLA 65

Query: 62  VTSVEEGVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMS-- 117
           V +V+EG++LR     A  I +L  + P     +    L  ++S +      +++L+S  
Sbjct: 66  VATVDEGIELRQAGLLAQPILILGLVDPRAIAELVYYRLTVIVSDLIWFQEAWAQLVSNH 125

Query: 118 -----CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                        L +DTG  R+GL +++E   F              + +H + A    
Sbjct: 126 QESLLDDAKLKVHLALDTGMGRIGLRTVEEVQAFAEGIQVFPWVNWEGVDTHFSTAGGGD 185

Query: 172 SHVNSVQLERFRTLISHYKG--IEASLASSS-GILLGPNYHFQLTRPGISLYGGTDKINK 228
                 Q  +++ L++           A+S+ G+         + R GIS+YG   K  +
Sbjct: 186 PAYVETQWAKWQELLTAVPDSVTVRHYANSAMGVWFKRQPVSSIERFGISMYGMHPKDER 245

Query: 229 ---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 +Q  +   + I+ +++   G  +SYG   +   D  +A   IGYADG+      
Sbjct: 246 SSLPIDLQPALQLISEIVYVKQVEKGSKISYGASYEAQEDEWVATIPIGYADGWFRHYKD 305

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD- 344
           +               ++G+  P+LG I MD  M  +     + VG  + + G D  L+ 
Sbjct: 306 I------------PVLVEGHACPVLGVINMDQLMIRLPH--QVPVGTTVTLIGQDHHLEN 351

Query: 345 ---DVALASGTTNYDLLVRIGTRYAKFY 369
              D+A   GT +Y++   +  R  + Y
Sbjct: 352 HAADLARLVGTISYEIFCGLSDRIPRIY 379


>gi|320459028|dbj|BAJ69649.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 450

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 92/408 (22%), Positives = 159/408 (38%), Gaps = 40/408 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
                 +  ++L  +++N   + ++ G          VVK +AYG G    A A    G 
Sbjct: 22  RRQYPAQAIVNLKTMRDNMAHLVSVVGGPTSGTAVMGVVKADAYGHGLLPTALAALAGGA 81

Query: 58  QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQEK---IIFDTNLIPVISSVPQLT-FY 112
                    E + LR       R  +L  ++ G       +   ++   + S+  +    
Sbjct: 82  TWLGTAQSHEALLLRRLGIGPDRCHILTWVYNGAAAPFDDLIAADIDVSVGSLSGIEALA 141

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169
           +     G      ++VD+GF R G +      AL        + + ++    SHLA AD 
Sbjct: 142 AAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAALVPLAKEGVLRIVGQWSHLAVADS 201

Query: 170 PSSHV----NSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLY 220
           P           Q+  F+         GI      LA+++  L  P  HF+LTRPGI LY
Sbjct: 202 PDVPEFVASTDQQIATFKDFTRRMELAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 261

Query: 221 GGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G          +   +   +  +A++  ++   AG  +SYG       ++  A+  +GYA
Sbjct: 262 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 321

Query: 277 DGYPLTLSGLDSEHSPSVFL-GGKGFI----KGYMVPILGKITMDMTMFDITD---SLSI 328
           DG   + SG D E +  V   GG   I       +  + G++ MD  + D+      L +
Sbjct: 322 DGIHRSASGFDMEGAKHVEKPGGPVRIMTAEGPRLYRVCGRVCMDQFIVDLHGSAAELGV 381

Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
             GD +++FG        +   DD A A+ T +Y++   +  R  + Y
Sbjct: 382 HEGDTVELFGAGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 429


>gi|218662157|ref|ZP_03518087.1| putative alanine racemase [Rhizobium etli IE4771]
          Length = 325

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 153/326 (46%), Positives = 196/326 (60%), Gaps = 31/326 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNA----------YGLGCEKIAPALYNAG 56
           LRL +DLTAL  NW  M   SG A                    YGLG E    ALY AG
Sbjct: 21  LRLTVDLTALTENWRDMARRSGAA----------RAAAVVKADAYGLGIEDAGEALYTAG 70

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            +DFFV +V+EGV LRLY P ARIFVL GI PG E+  FD +L+PVISS  QL F+  ++
Sbjct: 71  ARDFFVATVDEGVTLRLYAPDARIFVLSGIWPGTERRFFDNDLVPVISSDEQLAFWMAVL 130

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           +    +  AL VDTGF   G                      L++SHLAC DDP++ +N 
Sbjct: 131 ADYGDYSCALHVDTGFTGWGC-----------ISTMPSFAPVLVMSHLACGDDPTNAMNR 179

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
            QLE FR + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG      ++PM+ V 
Sbjct: 180 QQLESFRRVTAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGMANPMRPVA 239

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           TAEARII +R   AGE VSYG   +L RDS +A+ + GYADGY  + S        +V  
Sbjct: 240 TAEARIIQVRTVGAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQSSGGVPLRQAVPQ 299

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI 322
           GG+GFI G+ VP+ G+ITMD+T+FD+
Sbjct: 300 GGQGFIAGHKVPVAGRITMDLTIFDV 325


>gi|294011685|ref|YP_003545145.1| alanine racemase [Sphingobium japonicum UT26S]
 gi|292675015|dbj|BAI96533.1| alanine racemase [Sphingobium japonicum UT26S]
          Length = 348

 Score =  292 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 188/367 (51%), Gaps = 25/367 (6%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  LRL++D  AL +NW  +    G+A   A +K + YGLG  ++   L  AG +DFFV+
Sbjct: 5   SAPLRLRMDEGALLSNWRWLKRQGGDAACGAAIKADGYGLGAVEVMRRLLGAGCRDFFVS 64

Query: 64  SVEEGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           +  E   L     +     VL+G+      +   +   PV+ +  Q+  +          
Sbjct: 65  NWAEAAVLEPLVTEGVSLSVLHGVREEDLAVALASRARPVLCTEWQIARWRHA----GGG 120

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           P  + VDTG NRLGL  +  +            +++ ++SHLACAD+    ++  QLERF
Sbjct: 121 PCDVMVDTGMNRLGLDWRGDV-----PARLAGLEIATLMSHLACADE-DGPLSPAQLERF 174

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
             L    K    SLA+S+GI +G +Y F +TRPGI+LYGG  +   +  ++ VV  EA++
Sbjct: 175 SALRGQVKAARYSLANSAGICMGADYAFDMTRPGIALYGGVPRREAAGHIRQVVVPEAQV 234

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +  R+  AG+ + Y    +  +D  IAV  +GYADGY    SG  S  +           
Sbjct: 235 LQRRRVRAGDTIGYNATYRAPKDMQIAVLNLGYADGYLRCFSGRGSMSA----------- 283

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G  +P++G+I+MD+T  D++    I   D++++   D KL D A ASG + Y+LL  +G
Sbjct: 284 GGRHLPVVGRISMDLTAVDVSGLPDISEEDWLEV---DYKLVDAAAASGLSQYELLTGLG 340

Query: 363 TRYAKFY 369
            R+ + +
Sbjct: 341 ARFDRVW 347


>gi|46200246|ref|YP_005913.1| alanine racemase [Thermus thermophilus HB27]
 gi|46197874|gb|AAS82286.1| alanine racemase [Thermus thermophilus HB27]
          Length = 361

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 161/374 (43%), Gaps = 36/374 (9%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           E   +++DL AL  N+  +   +G      V+K +AYG G   +A  L   GV  F V +
Sbjct: 13  ERAWVEVDLAALWANYRLLAGRAGG-EVIPVLKADAYGHGALPLARFLEGKGVGRFAVAT 71

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHP 123
           +EEG +LR    +  + +L  +HP + +   +  L+P +S++      S +  + G+   
Sbjct: 72  LEEGRRLREGGIKGEVLLLGSLHPLEAEEALELGLVPTLSTLEAAEALSQRARALGLVPR 131

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L+VDTG NR+G   +EA           + ++  + +HLA A +  +     Q  RF+
Sbjct: 132 AHLKVDTGMNRVGFPWEEAASALRAVEALGV-RVEGVYTHLATAGE-DAAFVETQRRRFQ 189

Query: 184 TLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
            +     +G    L +S G+L          R G++LYG          ++ ++   AR 
Sbjct: 190 EVRRALGEGYFYHLENSLGLLRHGATAG--VRVGLALYGLVP----GFGLRPILRILARP 243

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
            L+++  AG+ V YGG         +A   +GYADG P              F+ G    
Sbjct: 244 TLVKRLKAGDRVGYGGVYVARGGEWLATLPVGYADGLPW---------GAVRFVKGP--- 291

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD-------DVALASGTTNY 355
            G ++ + G+I+MD T   +   + +E    +      +  D         A A GT  Y
Sbjct: 292 DGRLLEVAGRISMDQTTVLLPGPVGLEAVFEV------LSADFGPTGLLAWAEARGTLPY 345

Query: 356 DLLVRIGTRYAKFY 369
           ++ V +  R  + Y
Sbjct: 346 EVAVHLSRRLPRRY 359


>gi|309775769|ref|ZP_07670764.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916446|gb|EFP62191.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 379

 Score =  291 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 89/388 (22%), Positives = 163/388 (42%), Gaps = 33/388 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N    ++I    ++ N   +   LS   +  AVVK NAYG G E    A+ +     
Sbjct: 1   MMENSRTYVEIHTAYIRENVIHLKQNLSPKTKFMAVVKGNAYGHGIEPCVHAIDDL-CDW 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSC 118
           +   +++E +++R  + +  I V   +   + K      +     S   L   S + +  
Sbjct: 60  YATATMQEAIRVRAVSREKPILVFGYVTDEEIKQAAAYAITLSAVSTAFLQHISAVCVQQ 119

Query: 119 GVSHPYALQVDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACA---DDPS 171
            +     L++DTGF+RLG+S      E ++     +      ++ I +HL  A    +  
Sbjct: 120 RLQVAVHLKLDTGFHRLGISCCENSSECMEELLPLYALPNIHITGIYTHLVFAGSIQEQE 179

Query: 172 SHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG-GTDK 225
                +Q  RF+  I+  + +        + +S   +  P  H  + R G  ++G  + +
Sbjct: 180 QAFTQLQYRRFKNCIAALRKLGIDPGICHICNSKAAVHHPQLHMDMVRVGAYMFGLASAQ 239

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
             +  P++  +  +AR++L+R+  AGE V YG      + + IAV A G+ADGY   +  
Sbjct: 240 EQELIPLKEALLWKARVVLLREIKAGEGVGYGHDFIAEKPTRIAVLAAGFADGYRRCI-- 297

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
                  +        + G   P++GK+ MDM M D+T    +  G+Y  + G   + D 
Sbjct: 298 -------AQSPQSYVLLHGKRAPLVGKVCMDMFMVDVTAIQGLHTGEYAVLCGQADR-DA 349

Query: 346 VALAS------GTTNYDLLVRIGTRYAK 367
           V+         GT   ++ V I  R  +
Sbjct: 350 VSSYLLGKIIQGTAG-EITVGITERVNR 376


>gi|56697512|ref|YP_167880.1| alanine racemase [Ruegeria pomeroyi DSS-3]
 gi|56679249|gb|AAV95915.1| alanine racemase [Ruegeria pomeroyi DSS-3]
          Length = 377

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 183/363 (50%), Gaps = 26/363 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL +NW ++NA +  A TAAVVK + YGLG  ++A  L  AG + FFV + EEG
Sbjct: 10  LTIDLDALADNWQALNART-TAETAAVVKADGYGLGAARVAARLARAGARTFFVAAAEEG 68

Query: 69  VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +R    P   I V  G   G   I+    L P+I+SV Q+    + +     H + +Q
Sbjct: 69  AAVRKAVGPDPMIGVFSGHMEGDAGILRANRLTPMINSVDQML---RHVEQLPGHRFGVQ 125

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLGL  ++       +  +     +L++SHLACAD+P   +N  QL  F+ +  
Sbjct: 126 LDTGMNRLGLEPEDWAQLREIALRQN---PALVMSHLACADEPGHDMNRKQLRLFKEMTD 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             K    SLA++ GILLGP+YHF L RPG+ LYGG          + VVT +  +I +R 
Sbjct: 183 GIKA-PRSLAATGGILLGPDYHFDLCRPGVGLYGGEPFDEA----KAVVTLDLPVIQVRD 237

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
              GE V YG      R   IA  A GYADG    +    +  +                
Sbjct: 238 LAEGETVGYGNSWTAPRACRIATVAAGYADGLHRAMGRGITLFAGKTA-----------C 286

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           P++G+I+MD+   D++          +Q+      +DD+A A+GT  Y++L  +G RY +
Sbjct: 287 PVVGRISMDLITVDVSGLD--HEPASLQLLNRLQTVDDLAEAAGTIGYEILTSMGRRYRR 344

Query: 368 FYT 370
            Y 
Sbjct: 345 SYV 347


>gi|148552942|ref|YP_001260524.1| alanine racemase [Sphingomonas wittichii RW1]
 gi|148498132|gb|ABQ66386.1| alanine racemase [Sphingomonas wittichii RW1]
          Length = 348

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 182/375 (48%), Gaps = 38/375 (10%)

Query: 3   SNEFLRLKIDLT--ALKNNWHSMNALSGNARTAAVVKD------NAYGLGCEKIAPALYN 54
           + EFL L++DL   AL  NW  +   +                 +AYGLG  +++  L +
Sbjct: 2   TQEFLPLRLDLDPQALVANWRWLGERAAAPA-------GAAIKADAYGLGAVEVSRRLAD 54

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
           AG +DFFV +  E   L      A + VL+G+          +   PV++S       ++
Sbjct: 55  AGCRDFFVATWAETEALGSLPFGAGLSVLHGLREEDLAAALASRARPVLNS---PAMVAR 111

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
             +     P  + +DTG NRLGL+++EA      S      ++ L++SHLACAD+P S +
Sbjct: 112 WKAAAPGRPCDVMIDTGMNRLGLTVEEA-----CSGLLDGLEIDLLLSHLACADEPDSPM 166

Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           N  Q  RF  L         SLA+S+G  LGP Y F L RPGI+LYGG  +      +  
Sbjct: 167 NERQRARFVDLRGRVAAKRHSLANSAGACLGPAYGFDLIRPGIALYGGIPRPEARGHIVR 226

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           VV  EA+++ +R   AG+ + YG      R   +A+  +GYADGY    +G         
Sbjct: 227 VVRIEAQVLQVRDVPAGDTIGYGATFTAERPMRVAILNLGYADGYLRAFAG--------- 277

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
              G   + G   P+ G+++MD+   D+T +     GD+++I   D  L+  A  +G + 
Sbjct: 278 --NGAALVNGRRCPLAGRVSMDLIAVDLTGA-DAAEGDWLEI---DYALESAADRTGLSQ 331

Query: 355 YDLLVRIGTRYAKFY 369
           Y+LL  +G+RY + +
Sbjct: 332 YELLTGLGSRYQRRW 346


>gi|50955527|ref|YP_062815.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952009|gb|AAT89710.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 372

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/379 (24%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           S  F  L +DL A+  N   +   +G     AVVK +AYG G  + A A    G     V
Sbjct: 2   SAPFRELVVDLDAVSANVVRLRERAGTPHLMAVVKADAYGHGAVESACAALAGGADWLGV 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             + E  +LR    +A +                  +   +SS+  L   +       + 
Sbjct: 62  ADLSEASQLRAAGIEAPLLAWLHDPDEDFVAAIAAGVDIGVSSLAHLEAAAAAGGGSPAF 121

Query: 123 PYALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L+++TG +R GL  ++        H         +  + SHL+ A            
Sbjct: 122 -VQLKLETGLSRNGLPEEQWEAVFARAHELERSGRIVVRGVFSHLSNASPAEDRAAIAAY 180

Query: 180 ER--FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQT 234
           ER   R   +        +A+S+  +  P   F L R G+++YG +     S     ++ 
Sbjct: 181 ERGLARAEAAGLAPELRHIAASAAAISLPEARFTLVRLGLAIYGLSPFGAASATELGLRP 240

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +T  AR+  +R+  AG+ VSY    +  R++ +A+  +GY DG P   S L        
Sbjct: 241 ALTLRARVAAVRRVPAGKGVSYDYTYRTERETTLALVPVGYGDGLPRHASNL-------- 292

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   I G    + G+I MD  + D+ D+  + VGD + +FG         DD A A+
Sbjct: 293 ---GPVSIGGERFRVSGRIAMDQFVVDVGDAP-VAVGDEVVLFGDPARGVPGADDWAAAA 348

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T NY+++ R+G R  + +
Sbjct: 349 ETINYEIVTRLGGRLRRTF 367


>gi|302388874|ref|YP_003824695.1| alanine racemase [Thermosediminibacter oceani DSM 16646]
 gi|302199502|gb|ADL07072.1| alanine racemase [Thermosediminibacter oceani DSM 16646]
          Length = 384

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 153/346 (44%), Gaps = 20/346 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++++L AL+ N+ ++    G     AVVK +AYG G + +A AL  AGV+ F V  +EE 
Sbjct: 8   MEVNLRALRQNYETIRREVG-VPVMAVVKGDAYGHGAKDVALALQEAGVEWFGVEFLEEA 66

Query: 69  VKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           V+LR    + RI  L G +     +I  + ++IP I ++ +    +K     GVS    L
Sbjct: 67  VELREAGIKGRILCLTGPVTREDCEIFIEKDVIPTIYNLDRADLLNKTAARRGVSCRVHL 126

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           + DTG  R G   ++         +          +H A A          QL  F+ ++
Sbjct: 127 KFDTGLGRFGFLYEDLDRVIDGLRSFSHLIYEGAYTHFAEAFAKKPDYTLYQLSVFQRVL 186

Query: 187 SHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
              +  GI+      A+S   +  P     + R G +LYG T   N S  ++ V   + +
Sbjct: 187 DKLEQSGIKVAIRHAANSVAAMDFPEARLDMVRIGSALYGITMFKNTSVRLERVARLKVK 246

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT-----------LSGLDSEH 290
           II ++    G  + YG   K  RD++I +  +GY +G  +            L  +  E 
Sbjct: 247 IIDVKSLPRGSYIGYGRTYKTQRDTVIGIIPVGYFEGLKVQRRNYAFTLVGLLRNIYHEI 306

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
              +      F+ G  +PILG+I M +T  D+T +    +GD + +
Sbjct: 307 KDFLNPVPLVFMDGKPLPILGRIGMQLTAIDLTGT-GAGIGDEVTV 351


>gi|170780959|ref|YP_001709291.1| alanine racemase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155527|emb|CAQ00639.1| alanine racemase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 385

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 150/382 (39%), Gaps = 34/382 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +IDL A+  N  ++ A +G     AVVK + YG G    A A    G     V  + E 
Sbjct: 17  ARIDLGAISTNVRTLRAAAGAPLVMAVVKADGYGHGAVASARAALAGGADRLGVVDIREA 76

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127
           + LR    +A I               +  +   ++S+ Q           G +    L+
Sbjct: 77  LALRAAGIEAPILTWMHAPYADFATAIEAGIDLGLNSLRQVREAAEAARRVGRTAEVHLK 136

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VDTG  R G++  E                  L  + SHLA A +        Q+  F  
Sbjct: 137 VDTGLGRNGVTPAEWPGVVAEVAALVAEGRIHLGGVFSHLANAGEDED---RAQVRAFHE 193

Query: 185 LIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVV 236
            +      G+E     LA+++G L  P     + R GI +YG +      +    +   +
Sbjct: 194 AVDVVRAAGLEPGIRHLAATAGALRVPEARLDMVRLGIGIYGISPLDGVTSADLGLVPAM 253

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T    ++ +++  A   VSYG   + T  + +A+ ++G+ADG P   S            
Sbjct: 254 TLVGSVVAVKRVPADTGVSYGYTYRTTSATTLALVSLGFADGVPRLASNR---------- 303

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSL----SIEVGDYIQIFGP----DIKLDDVAL 348
                I G    + G+I MD  + D+ D +     + VGD   +FG        +++ A 
Sbjct: 304 -APVAIHGARFRVSGRIAMDQFVVDVGDGVVDGRPVAVGDDAVLFGDPATGAPSVEEWAE 362

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
           A+GT  Y+++ R+  R  + ++
Sbjct: 363 ATGTIGYEIVARVAGRVTRRHS 384


>gi|258651430|ref|YP_003200586.1| alanine racemase [Nakamurella multipartita DSM 44233]
 gi|258554655|gb|ACV77597.1| alanine racemase [Nakamurella multipartita DSM 44233]
          Length = 394

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 97/380 (25%), Positives = 158/380 (41%), Gaps = 30/380 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNAR----TAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           E +   +DL A+  N  ++ AL   +       AVVK + YG G    A A    G    
Sbjct: 22  ERVAAVVDLAAITANVRTLLALMRGSNPAGSVMAVVKADGYGHGAVAAAQAALAGGATWL 81

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V +  E ++LR       +         +        +   ++S  QL       + G 
Sbjct: 82  GVATPTEALQLRAAGVDVPVLAWLWPPGERVAPALAAGVQLAVASRAQLDRVLD-QAVGA 140

Query: 121 SHPYALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                ++VDTG  R G+   E    LD    +      +++ ++SHLA AD P       
Sbjct: 141 VPDIHVKVDTGLGRGGVGPAEIGAVLDAVAAAQRAGRVRVAGLMSHLASADVPDDPSVPE 200

Query: 178 QLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           Q   F  +++    +GI+     LA+++G++  P   F L R GI  YG    +    P+
Sbjct: 201 QTATFHRILAAAADRGIDPPLRHLANTAGLIDHPATRFDLVRVGIGGYGLNP-VATPVPL 259

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
              +T  A + L ++  AG  VSYG   +  R++ +A+  +GYADG P   S        
Sbjct: 260 TPAMTLRATVALTKRVPAGHGVSYGLTYRTDRETTLALIPLGYADGLPRAASNR------ 313

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                G+ ++ G    I G++ MD  + D  D   +  GD   +FGP    +    D A 
Sbjct: 314 -----GEIWLAGARRRIAGRVAMDQVVVDCGDDP-VAAGDPAIVFGPGEQGEPTARDWAD 367

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
             GT +Y+++ RIG R  + 
Sbjct: 368 YCGTIDYEIVTRIGPRVPRR 387


>gi|307292839|ref|ZP_07572685.1| alanine racemase [Sphingobium chlorophenolicum L-1]
 gi|306880905|gb|EFN12121.1| alanine racemase [Sphingobium chlorophenolicum L-1]
          Length = 348

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 114/368 (30%), Positives = 185/368 (50%), Gaps = 27/368 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +  LRL+++  AL +NW  +    G     A +K + YGLG  ++   L +AG +DFFV+
Sbjct: 5   SAPLRLRMEEGALLSNWRWLKRQGGGVACGAAIKADGYGLGAAEVMRRLLDAGCRDFFVS 64

Query: 64  SVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           +  E   L    T +  + VL+G       +   +   PV+ +  Q+  + +        
Sbjct: 65  NWAEAAVLESLVTEEVSLSVLHGAREEDMALALTSRARPVLCTEWQIARWKQA----GGG 120

Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           P  + VDTG NRLGL  + +              +++ ++SHLA AD+    +   QLER
Sbjct: 121 PCDVMVDTGMNRLGLDWRGDVPARVA------GLEVATLLSHLASADE-DGPLTPTQLER 173

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           F  L    K    SLA+S+GI +G +Y F +TRPGI+LYGG  +   +  ++ VV  E +
Sbjct: 174 FSALQGQVKAARYSLANSAGICMGSDYAFDMTRPGIALYGGVPRREAAGNIRQVVFPETQ 233

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  R+  AG+ + Y    +  +D  IAV  +GYADGY    SG  S  +          
Sbjct: 234 VLQRRRVRAGDTIGYNATYRAAKDMEIAVLNLGYADGYLRGFSGRGSMSA---------- 283

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
             G  +P++G+I+MD+T  D+     I  GD++++   D KL D A  SG + Y+LL  +
Sbjct: 284 -GGRHLPVVGRISMDLTAIDVGGLPDISEGDWLEV---DYKLADAAAVSGLSQYELLTGL 339

Query: 362 GTRYAKFY 369
           G R+ + +
Sbjct: 340 GGRFDRVW 347


>gi|55980031|ref|YP_143328.1| alanine racemase [Thermus thermophilus HB8]
 gi|55771444|dbj|BAD69885.1| alanine racemase [Thermus thermophilus HB8]
          Length = 360

 Score =  288 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 160/375 (42%), Gaps = 36/375 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +++DL AL  N+  +   +G      V+K +AYG G   +A  L   GV  F V 
Sbjct: 11  QARAWVEVDLAALWANYRLLAGRAGG-EVIPVLKADAYGHGALPLARFLEGKGVGRFAVA 69

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSH 122
           ++EEG +LR    +  + +L  +HP + +      L+P +S++      S +  + G+  
Sbjct: 70  TLEEGRRLREGGIKGEVLLLGSLHPLEAEEALRLGLVPTLSNLEAAEALSQRARALGLVP 129

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+VDTG NR+G   +EA+          + ++  + +HLA A +  +     Q  RF
Sbjct: 130 RAHLKVDTGMNRVGFPSEEAVSALRAVEALGV-RVEGVYTHLATAGE-DAAFVETQRRRF 187

Query: 183 RTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           + +     +G    L +S G+L          R G++LYG          ++ ++   AR
Sbjct: 188 QEVRRALGEGYFYHLENSLGLLRHGATAG--VRVGLALYGLVP----GFGLRPILRILAR 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
             L+++  AG+ V YGG         +A   +GYADG P              F+ G   
Sbjct: 242 PTLVKRLKAGDRVGYGGVYVARGGEWLATLPVGYADGLPW---------GAVRFVKGP-- 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD-------DVALASGTTN 354
             G ++ + G+I+MD T   +   + +E    +      +  D         A A GT  
Sbjct: 291 -DGRLLEVAGRISMDQTTVLLPGPVGLEAVFEV------LSADFGPTGLLAWAEARGTLP 343

Query: 355 YDLLVRIGTRYAKFY 369
           Y++ V +  R  + Y
Sbjct: 344 YEVAVHLSRRLPRRY 358


>gi|290891219|ref|ZP_06554281.1| hypothetical protein AWRIB429_1671 [Oenococcus oeni AWRIB429]
 gi|290479183|gb|EFD87845.1| hypothetical protein AWRIB429_1671 [Oenococcus oeni AWRIB429]
          Length = 386

 Score =  288 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 157/386 (40%), Gaps = 36/386 (9%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFV 62
           +    + +DL A  +N   +   +   +  AV+K + YGLG   +A A    A      V
Sbjct: 6   HRPTWVSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++++E ++LR       I+VL        K+  D +++  I S+    +   L     + 
Sbjct: 66  SNLDEALELRQADLTLPIWVLGAWDYSDLKLFIDHDIVITIPSL---AWLQNLPDFEGTL 122

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACAD---DPSSHVNSVQ 178
             +L +DTG  R+G    + +       +K     L  + +H A AD   + S      Q
Sbjct: 123 KVSLAIDTGMTRIGFDKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQ 182

Query: 179 LERFRTLI--SHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYG-----GTDKINK 228
           L R++ L     +     S+A+S+  +     P   F   RPG  + G     G  K+  
Sbjct: 183 LRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPP 242

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
           +  ++ + +  + I  +R     + +SYG  +++  D  +A    GY DG+   +     
Sbjct: 243 NLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQKSS- 301

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344
                        I G  + I+G+ITMD TM  +       +G  + + G D    I ++
Sbjct: 302 -----------VIINGKRMLIIGRITMDQTMVKLDRKYP--IGTRVTLIGKDGGEQITVE 348

Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370
           +VA  S T   ++   +  R  + YT
Sbjct: 349 EVANYSHTIVDEIQTTLAPRIKRIYT 374


>gi|118587123|ref|ZP_01544552.1| alanine racemase [Oenococcus oeni ATCC BAA-1163]
 gi|118432402|gb|EAV39139.1| alanine racemase [Oenococcus oeni ATCC BAA-1163]
          Length = 371

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 143/379 (37%), Gaps = 30/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   R++   ++L  N      +SG       VK NAYG G  +++      GV    V+
Sbjct: 6   HRSTRIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVS 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++EG+ +R       I +L  I      I    + +  +SS+  L    K++       
Sbjct: 66  VLDEGIAIRQAGINDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADKIL-GKEKLS 124

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLER 181
             L VDTG NR+G+  ++ L        +     S   I +H A +D+P  H    Q  R
Sbjct: 125 VNLAVDTGMNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNR 184

Query: 182 FRTLISHY-KGIEASLASSSGILLG----PNYHFQLTRPGISLYGGTDKINKSHPM---Q 233
           +  LI          + +S   +      P  +  + R G  +YG         P+   +
Sbjct: 185 WYELIDGLIMPRYVHVMNSGAAMYHSKELPGCN-SIARVGTVVYGVEPSEGVLGPIDKLK 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V   ++ +  ++K  AGE +SYG +   +RD+ I    IGY DG+              
Sbjct: 244 PVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDFQL----- 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                   I G     +G+I MD  M  +       +G  + + G     +  L D+   
Sbjct: 299 -------LIDGQKCRQVGQIAMDQMMVVLPHEYP--IGTEVTLIGKSGKYENTLYDLHKH 349

Query: 350 SGTTNYDLLVRIGTRYAKF 368
           SG   + + V    R  + 
Sbjct: 350 SGVPPWKITVAFSDRLKRV 368


>gi|332799232|ref|YP_004460731.1| alanine racemase [Tepidanaerobacter sp. Re1]
 gi|332696967|gb|AEE91424.1| Alanine racemase [Tepidanaerobacter sp. Re1]
          Length = 401

 Score =  286 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/357 (22%), Positives = 142/357 (39%), Gaps = 29/357 (8%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +N    L +DL  +  N  ++    G  R   VVK NAYG G   +A     +G     V
Sbjct: 2   ANPTSWLYVDLNTISENIKTIKNYIGATRLLVVVKANAYGHGMYPVAACAVESGADYLGV 61

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVS 121
           +S+EEG+ LR    +  + V   I P Q +   + +L   + S   +             
Sbjct: 62  SSLEEGIFLRKSGIKEPVLVFNTILPEQAEDALNYDLTVTVCSFDTVQALNDAAAKMNKK 121

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
               +++DTG  R G+  + A++  H    N K   +  I +H + A   +  +   Q  
Sbjct: 122 AFVHVKIDTGLGRFGVLPEHAVEMVHIITANFKNIYIEGIYTHFSLAT--NESITRKQFN 179

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQ 233
            F ++I   +          + +S+ +L     H  + R G  +YG     N   S+P +
Sbjct: 180 IFLSIIKELEHQGYKIPLKHVCNSTAMLNYAEMHLDMVRVGNLVYGLCPSKNLKISNPSK 239

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS----- 288
                 ++II ++    G  V YG + K  R + +A+   GY DG  L +S  +      
Sbjct: 240 ----IYSKIIFLKTLPKGHYVGYGNRFKTRRHTTVAIVPFGYYDGLELFISQPNGIWDSL 295

Query: 289 --------EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336
                        +       + G    ILGKI+M   + D+TD    + +GD +++
Sbjct: 296 KNLIKQILASFGVITANRTVKVNGIQCNILGKISMQSCIVDVTDIKDKVFIGDVVEL 352


>gi|69250348|ref|ZP_00605138.1| Alanine racemase [Enterococcus faecium DO]
 gi|68193971|gb|EAN08535.1| Alanine racemase [Enterococcus faecium DO]
          Length = 300

 Score =  286 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 120/311 (38%), Gaps = 27/311 (8%)

Query: 72  RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV---SHPYALQV 128
           R       I +L  +      +    +L     +   L   + ++            L+ 
Sbjct: 2   REAGFTQPILILNMVPYDALTVAVAHDLSVTAGTREWLQAAAAVLEKSKLETPLSIHLKA 61

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           DTG  R+G  + +E  +        ++ +   + +H + AD       ++Q ERF  ++ 
Sbjct: 62  DTGMGRIGFCTPEEVKEAAAFIKESRVLEWEGLFTHFSTADQADDTYWNLQKERFIEVLK 121

Query: 188 HYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEARI 242
               +     +++S+  L        + R G+++YG       + + +P+Q  +   + +
Sbjct: 122 KLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSEL 181

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           I ++K  AGE + YG          I    IGYADG+P  + G                +
Sbjct: 182 IQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWPRKMQGFSL------------LV 229

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358
           +G     +G++ MD  M  +     +  G  + + G     +I + D+A   GT +Y++ 
Sbjct: 230 EGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDIADQLGTIHYEVA 287

Query: 359 VRIGTRYAKFY 369
             +G R  + Y
Sbjct: 288 CGLGQRIPREY 298


>gi|116490276|ref|YP_809820.1| alanine racemase [Oenococcus oeni PSU-1]
 gi|290889662|ref|ZP_06552751.1| hypothetical protein AWRIB429_0141 [Oenococcus oeni AWRIB429]
 gi|116091001|gb|ABJ56155.1| alanine racemase [Oenococcus oeni PSU-1]
 gi|290480659|gb|EFD89294.1| hypothetical protein AWRIB429_0141 [Oenococcus oeni AWRIB429]
          Length = 371

 Score =  286 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 143/378 (37%), Gaps = 30/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   R++   ++L  N      +SG       VK NAYG G  +++      GV    V+
Sbjct: 6   HRSTRIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVS 65

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++EG+ +R       I +L  I      I    + +  +SS+  L    K++       
Sbjct: 66  VLDEGIAIRQAGIDDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADKIL-GKEKLS 124

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLER 181
             L VDTG NR+G+  ++ L        +     S   I +H A +D+P  H    Q  R
Sbjct: 125 VNLAVDTGMNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNR 184

Query: 182 FRTLISHY-KGIEASLASSSGILLG----PNYHFQLTRPGISLYGGTDKINKSHPM---Q 233
           +  LI          + +S   +      P  +  + R G  +YG         P+   +
Sbjct: 185 WYELIDGLIMPRYVHVMNSGAAMYHSKELPGCN-SIARVGTVVYGVEPSEGVLGPIDKLK 243

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V   ++ +  ++K  AGE +SYG +   +RD+ I    IGY DG+              
Sbjct: 244 PVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDFQL----- 298

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                   I G     +G+I MD  M  +       +G  + + G     +  L D+   
Sbjct: 299 -------LIDGQKCRQVGQIAMDQMMVALPHEYP--IGTEVTLIGKSGKYENTLYDLHKH 349

Query: 350 SGTTNYDLLVRIGTRYAK 367
           SG   + + V    R  +
Sbjct: 350 SGVPPWKITVAFSDRLKR 367


>gi|323692158|ref|ZP_08106401.1| hypothetical protein HMPREF9475_01264 [Clostridium symbiosum
           WAL-14673]
 gi|323503732|gb|EGB19551.1| hypothetical protein HMPREF9475_01264 [Clostridium symbiosum
           WAL-14673]
          Length = 369

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 145/367 (39%), Gaps = 26/367 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPAL-YNAGVQ 58
           M+      + IDL  +K+N   +      +     V+K NA G G  + +  L    G++
Sbjct: 1   MNETGNSFITIDLAKIKSNMEKIRNYVGPDVEIMPVLKANACGHGLIRTSDWLVKECGIK 60

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117
              V  V E  +LR    QA I VL G+           NLI  +         S L   
Sbjct: 61  RLAVAQVREAEQLRRAGSQAEIMVLGGVPVNNLPYAVQENLILPVFRTQDAALLSALAQE 120

Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G +    +++DTG  R+G+   ++  +        K  ++  + +H   A+        
Sbjct: 121 NGRTARVHIKIDTGLGRIGVEKGEQLEELLDGILPLKGLEIEGVFTHFGEAEVTDPEFTE 180

Query: 177 VQLERFRTLISH--YKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH- 230
           +Q+ RF   +     +GI+       ++   +     H+ + R G+   G    +++ + 
Sbjct: 181 IQISRFEEALGQIRARGIQPRYIHATNTPSTVRFKKAHYNMIRTGLLWLGYDPCLDEDNR 240

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++TV+  +  +   +  L+G  + Y       RD+++ +A  GY DGY   L      
Sbjct: 241 LGLETVLEWKTFLTNKKYVLSGRSMGYWRSFTAKRDTVVGIACFGYGDGYLEDLG----- 295

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                  GG   I G   PI+  + MD T  DITD    E+GD + + G D    I   D
Sbjct: 296 -----KKGGYVLIHGKRAPIIS-VCMDQTFLDITDIPDAEIGDTVTLIGHDGSEKIDAFD 349

Query: 346 VALASGT 352
           +   + T
Sbjct: 350 MEKLTKT 356


>gi|254388378|ref|ZP_05003613.1| alanine racemase [Streptomyces clavuligerus ATCC 27064]
 gi|197702100|gb|EDY47912.1| alanine racemase [Streptomyces clavuligerus ATCC 27064]
          Length = 367

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 146/373 (39%), Gaps = 38/373 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH +E   + +DL A+++N   +  +   A   AVVK NAYG G   +A A   AG +  
Sbjct: 16  MHRSE---ITLDLDAVRHNARQLIKMVDGAELWAVVKGNAYGHGAVPVAGAALEAGARAL 72

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V ++ EG+ LR   P+ARI VL  + PG         L  V      L   S  +    
Sbjct: 73  CVATLGEGLALRERFPRARIVVLGPVGPGSVPAASRAGLECVAHDDASLEALSGAVE--- 129

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              Y ++V+ G NR G       D   +   ++   +    SH          V ++QL 
Sbjct: 130 ---YHIKVNLGLNRYGF------DRIPDRLREQPVGVFGQFSH----AHVDLEVTALQLA 176

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVVTA 238
           RF             + +SS  L  P       R G +L G +   N S   P++  ++ 
Sbjct: 177 RFLEQCEAVPRATRHVCNSSAALSLPAARLDAVRSGSALLGVSLMTNPSSRLPLRPALSW 236

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +  +R   AG  V Y G  ++TR ++  V  +GY DG+             S  +G 
Sbjct: 237 ISCLAQVRNLPAGAAVGYEGAHRVTRPTVTGVVPVGYGDGF------------VSRLVGT 284

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              +      ++G ++MD     +       +G  + + G  + ++     +   N++L 
Sbjct: 285 TVLVGDEPATVIGSVSMDALTVALPRRFP--IGTPVTLIGDGLPMESHLRFASMANWELC 342

Query: 359 VRIGT---RYAKF 368
             +     R  + 
Sbjct: 343 TGLSNDPLRVHRR 355


>gi|148273758|ref|YP_001223319.1| putative alanine racemase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831688|emb|CAN02657.1| putative alanine racemase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 385

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 147/381 (38%), Gaps = 34/381 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
            +ID  A+  N  ++ A +G     AVVK + YG G    A A    G     V  V E 
Sbjct: 17  ARIDTGAISANVRALRAATGAPLVMAVVKADGYGHGAVASARAALAGGADRLGVVDVREA 76

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127
           + LR     A +               + ++   ++S+ Q           G +    L+
Sbjct: 77  LALRAAGIDAPVLTWMHAPGADFATAIEADVDLGLNSLRQVREVAEAARRVGRTAEVHLK 136

Query: 128 VDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VDTG  R G++  E             +    L  + SHLA A       +  Q+  F  
Sbjct: 137 VDTGLGRNGVTPAEWPAVVAEVQALVAEGRIHLGGVFSHLANA---GREEDRAQVRAFHQ 193

Query: 185 LIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVV 236
            +      G+E     LA+++G L  P     + R GI +YG +      +    +   +
Sbjct: 194 SVDVVRAAGLEPGIRHLAATAGALRVPEARLDMVRLGIGIYGISPLDGVTSADLGLVPAM 253

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T    ++ +++  A   VSYG   + +  + +A+ ++G+ADG P   S            
Sbjct: 254 TLVGSVVAVKRVPADTGVSYGYTYRTSSATTLALVSLGFADGVPRLASNR---------- 303

Query: 297 GGKGFIKGYMVPILGKITMDMT----MFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                I G    + G+I MD         + D + + VGD   +FG        +++ A 
Sbjct: 304 -APVAIHGARFRVSGRIAMDQFVVDVGDGVVDGIPVAVGDDAVLFGDPATGAPSVEEWAE 362

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
           A+GT  Y+++ R+  R  + +
Sbjct: 363 ATGTIGYEIVARVAGRVTRRF 383


>gi|284992829|ref|YP_003411383.1| alanine racemase [Geodermatophilus obscurus DSM 43160]
 gi|284066074|gb|ADB77012.1| alanine racemase [Geodermatophilus obscurus DSM 43160]
          Length = 378

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 147/385 (38%), Gaps = 28/385 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M       + +DL  +  N  ++    G     AVVK + YG G    A A    G    
Sbjct: 1   MTQRARAEVVVDLDTIAANTAALRERVGRP-LMAVVKADGYGHGLVPSARAALAGGADAL 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCG 119
            V  +EE + LR       +                 ++   +++        +   + G
Sbjct: 60  GVAVLEEALALRAAGVTVPLLSWLHTPGTDYAAALTADVEVSVNAEWALAEVVAAARATG 119

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNS 176
            +    L  DTG +R G +  +       +   +      +  + SH+A AD P+     
Sbjct: 120 RTAQLHLFADTGLSREGATEADWPGLVAAAARAQDDGEVAVVGLWSHMAYADAPTHPTIG 179

Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229
            Q+  F   +     +   G    LA+S+  +  P+  + + RPGI++YG          
Sbjct: 180 AQVRVFEEAVAIARAAGLTGARLHLANSAATVALPDTWYDMVRPGIAVYGLDPLGGDPAA 239

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           H ++  +T  AR  L ++  AG  VSYG       ++ + +  +GYADG P         
Sbjct: 240 HGLRPAMTVRARAALTKRVPAGAGVSYGHTYFPESETTLLLVPVGYADGVPRAAGNR--- 296

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345
                         G    I G++ MD  + D+ D+  +  GD + ++GP    +    D
Sbjct: 297 --------APVLAAGAHRTIAGRVCMDQFVLDVGDA-EVRAGDEVVLWGPGDRGEPTAQD 347

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
            A A  + +Y+L+ RIG R+ + Y 
Sbjct: 348 WADAVDSIHYELVTRIGGRFTRRYV 372


>gi|294814274|ref|ZP_06772917.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064]
 gi|294326873|gb|EFG08516.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064]
          Length = 352

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 146/373 (39%), Gaps = 38/373 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH +E   + +DL A+++N   +  +   A   AVVK NAYG G   +A A   AG +  
Sbjct: 1   MHRSE---ITLDLDAVRHNARQLIKMVDGAELWAVVKGNAYGHGAVPVAGAALEAGARAL 57

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V ++ EG+ LR   P+ARI VL  + PG         L  V      L   S  +    
Sbjct: 58  CVATLGEGLALRERFPRARIVVLGPVGPGSVPAASRAGLECVAHDDASLEALSGAVE--- 114

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              Y ++V+ G NR G       D   +   ++   +    SH          V ++QL 
Sbjct: 115 ---YHIKVNLGLNRYGF------DRIPDRLREQPVGVFGQFSH----AHVDLEVTALQLA 161

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVVTA 238
           RF             + +SS  L  P       R G +L G +   N S   P++  ++ 
Sbjct: 162 RFLEQCEAVPRATRHVCNSSAALSLPAARLDAVRSGSALLGVSLMTNPSSRLPLRPALSW 221

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +  +R   AG  V Y G  ++TR ++  V  +GY DG+             S  +G 
Sbjct: 222 ISCLAQVRNLPAGAAVGYEGAHRVTRPTVTGVVPVGYGDGF------------VSRLVGT 269

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              +      ++G ++MD     +       +G  + + G  + ++     +   N++L 
Sbjct: 270 TVLVGDEPATVIGSVSMDALTVALPRRFP--IGTPVTLIGDGLPMESHLRFASMANWELC 327

Query: 359 VRIGT---RYAKF 368
             +     R  + 
Sbjct: 328 TGLSNDPLRVHRR 340


>gi|256828239|ref|YP_003156967.1| alanine racemase [Desulfomicrobium baculatum DSM 4028]
 gi|256577415|gb|ACU88551.1| alanine racemase [Desulfomicrobium baculatum DSM 4028]
          Length = 374

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 170/380 (44%), Gaps = 30/380 (7%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +R +I L AL +N+  +   + N   A V+K +AYG G  + A AL+ AG +     +V 
Sbjct: 8   VRTRIRLKALVDNYRLIRTRATNP--APVIKSDAYGHGLPEAAAALFAAGARTMAAGTVG 65

Query: 67  EGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
           E   L+   P+   I +L  +       + + +++  + S  QL    +     G +   
Sbjct: 66  EAAVLKDTVPEVEVISLLGPLDTADYACVCERDIVAFVGSTEQLLLLEEAARLAGTTVRV 125

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183
           AL+ DTG  RLG ++ EA          +  + ++  SHLA ADDP  +     Q  RF 
Sbjct: 126 ALKFDTGMARLGFAVDEAAGVADTLDGLEHVRATMACSHLATADDPGQAEYAQEQGGRFA 185

Query: 184 TLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYG-----GTDKINKSHPMQT 234
            ++         + ASLA+S  I   P  H  L RPGI+LYG     GT    K H +Q 
Sbjct: 186 RILKALHARGLDVRASLANSGAIFGHPALHHDLQRPGIALYGANPFHGTPWEAKGHGLQP 245

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   +R++ IR   AG+ VSYG       +  I + A+GYAD Y   LS          
Sbjct: 246 AMQVSSRLVQIRTIPAGQSVSYGRTFTAPAEMRIGIVAVGYADNYSRGLS---------- 295

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350
               +  I G  VP+LG++ M +T  D++       GD I + G      I  +++A   
Sbjct: 296 -AKAQMLIHGKRVPVLGRVCMQLTAVDLSHVPEAAAGDEIFMLGGAGPAAISAEELAGWW 354

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           GT  Y++   +G    + Y 
Sbjct: 355 GTITYEVFCLLGQ-NPREYV 373


>gi|87199969|ref|YP_497226.1| alanine racemase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135650|gb|ABD26392.1| alanine racemase [Novosphingobium aromaticivorans DSM 12444]
          Length = 356

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/363 (33%), Positives = 179/363 (49%), Gaps = 25/363 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL+ID  AL +NW +++A+SG A   A VK +AYGLG  +++  L  AG +DFFV    
Sbjct: 17  LRLRIDADALASNWRALDAMSGTATAGAAVKADAYGLGAARVSRILVGAGCRDFFVAHWA 76

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   L  + P A I VL+G     E      T   PV++S+ Q   + +           
Sbjct: 77  EVPNLLPHVPAASIAVLHGPMNAAEAAFARATGARPVLNSLSQARLWQE----TGGGRCH 132

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           + VDTG +RLGL++ E  D            + L +SHLA AD+     N  Q  RF T+
Sbjct: 133 VMVDTGMSRLGLAMSEIAD-----PALADLDVDLCLSHLASADE-DVPQNEQQRLRFETV 186

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +       SLA+S+GI LG  +H  +TRPGI+LYGG  +   +  ++ V   EA +I +
Sbjct: 187 RAAIPARRYSLANSAGIALGAGFHADVTRPGIALYGGIARPEFAGTIRQVARPEAAVIQV 246

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ V Y       R   + V AIGYADGY    +G            G     G 
Sbjct: 247 RHLQPGDKVGYNAIFTADRPMRVGVLAIGYADGYLRCWTGR-----------GSFLFDGV 295

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            VP+LG+++MD+T+ D+    S   GD++        L   A  SG + Y+LL  +G R+
Sbjct: 296 EVPVLGRVSMDLTIVDLGGVPSCNEGDWLV---ASYDLPRAARESGLSQYELLTVLGRRF 352

Query: 366 AKF 368
           ++ 
Sbjct: 353 SRR 355


>gi|167629016|ref|YP_001679515.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1]
 gi|167591756|gb|ABZ83504.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1]
          Length = 394

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 143/353 (40%), Gaps = 24/353 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            +++D+ AL +N  S+    G+ +    VVK NAYG G  + A  L   GV    VT V 
Sbjct: 4   WVEVDMDALAHNARSIRQYLGDEKILYGVVKANAYGCGIVECARCLVENGVDRLAVTHVS 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVS-HPY 124
           EGV+LR     A I V+      +   +    L   +S V   +    +    G    P 
Sbjct: 64  EGVQLRRSGIDAPILVMAPFMAEETGDLVRFGLTASVSDVDRAVQIAQEARRQGRRGLPV 123

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF-- 182
            ++V+TG  R G+    A         +    L    +HLA A          Q+ RF  
Sbjct: 124 HIKVETGLGRTGVVAAAAPLLVAAIVGQDELYLEGAFTHLATAATGDVRQVHRQVARFLE 183

Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPMQTVVT 237
                   + +      +A+S+  L  P YHF   R G  LYG     +     ++ V  
Sbjct: 184 TVAAMEACAGFSIPVKHVANSAAALAFPQYHFDGVRIGTLLYGQPAGPVAAGLALRDVWR 243

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----------PLTLSGLD 287
            +AR+  +     G  V YG      R++ +AV  +GY DGY             L+ + 
Sbjct: 244 LKARVAHVATLPPGHGVGYGRAYVTRRETRVAVLPVGYVDGYQLEPVSVPVSLWDLAKVL 303

Query: 288 SEHSPSVFLGGK----GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
            + S + F  G       I     P+LGK+ M MTM D+TD   +++G  +Q+
Sbjct: 304 VKTSAAYFGLGPTARSVRIGERRAPVLGKVAMQMTMIDVTDIPDVQLGTVVQL 356


>gi|15594505|ref|NP_212294.1| alanine racemase (alr) [Borrelia burgdorferi B31]
 gi|218249176|ref|YP_002374687.1| alanine racemase [Borrelia burgdorferi ZS7]
 gi|223889148|ref|ZP_03623737.1| alanine racemase [Borrelia burgdorferi 64b]
 gi|225549335|ref|ZP_03770308.1| alanine racemase [Borrelia burgdorferi 94a]
 gi|226321930|ref|ZP_03797455.1| alanine racemase [Borrelia burgdorferi Bol26]
 gi|6647402|sp|O51182|ALR_BORBU RecName: Full=Alanine racemase
 gi|226711027|sp|B7J192|ALR_BORBZ RecName: Full=Alanine racemase
 gi|2688050|gb|AAC66549.1| alanine racemase (alr) [Borrelia burgdorferi B31]
 gi|146743642|gb|ABQ43052.1| alanine racemase [Borrelia burgdorferi JD1]
 gi|146743644|gb|ABQ43053.1| alanine racemase [Borrelia burgdorferi]
 gi|218164364|gb|ACK74425.1| alanine racemase [Borrelia burgdorferi ZS7]
 gi|223885397|gb|EEF56498.1| alanine racemase [Borrelia burgdorferi 64b]
 gi|225370193|gb|EEG99633.1| alanine racemase [Borrelia burgdorferi 94a]
 gi|226232520|gb|EEH31274.1| alanine racemase [Borrelia burgdorferi Bol26]
 gi|312148518|gb|ADQ31177.1| alanine racemase [Borrelia burgdorferi JD1]
          Length = 372

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 27  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 87  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 204

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE
Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 264

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG    + Y
Sbjct: 314 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 370


>gi|256371254|ref|YP_003109078.1| alanine racemase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007838|gb|ACU53405.1| alanine racemase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 363

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 163/370 (44%), Gaps = 15/370 (4%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  +     +IDL  L+ N   +   +  A  +AVVK +AYG G   +A AL +  V  F
Sbjct: 1   MIGHRPTEARIDLERLRANARLLAERAAPAALSAVVKADAYGHGASTVARALGDL-VDAF 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V +VEEG+ LR      R+ VL             ++L P +     +   +   S   
Sbjct: 60  CVATVEEGLALRAAGVTGRVLVLSEPPESAVSACAASSLEPFVEHERFVEALAGAASALG 119

Query: 121 S-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQ 178
                 + VDTG +R G+           S  +   ++  + SHL  AD+ P+      Q
Sbjct: 120 REASVHIDVDTGMHRSGVHPA-QAATLAASARRHGVRVVGVASHLVRADEAPTHPTTLEQ 178

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           L RFR + +     E  L ++ G+L  P   F+  R GI LYG   + +    ++ V+  
Sbjct: 179 LSRFREVAARIGAPERHLLATGGLLALPEGRFERVRVGIGLYGYGPRRDDVAGLRPVLRL 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + ++ +    AGE VSYG ++ L   + +A   IGYADG P            +   G 
Sbjct: 239 VSHVVRLEALGAGEAVSYGHRRPLDVPAEVATLPIGYADGVPRA----------AFDAGL 288

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             + KG  +PI G +TMD TM      L + +GD + + G ++   + A   GT  Y++L
Sbjct: 289 AFWAKGVRLPIAGTVTMDQTMVAAPRGL-LALGDEVSLIGDEVDAWEWADVLGTIPYEVL 347

Query: 359 VRIGTRYAKF 368
            R+G R  + 
Sbjct: 348 ARLGPRIPRV 357


>gi|329890838|ref|ZP_08269181.1| alanine racemase [Brevundimonas diminuta ATCC 11568]
 gi|328846139|gb|EGF95703.1| alanine racemase [Brevundimonas diminuta ATCC 11568]
          Length = 378

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 116/335 (34%), Positives = 179/335 (53%), Gaps = 17/335 (5%)

Query: 41  YGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNL 99
           YGLG  +IAPALY+AG + FFV  + E V LR   P  A +FVL G+ PG E        
Sbjct: 55  YGLGAARIAPALYDAGCRAFFVAHLFEAVDLRRVLPADAELFVLNGLAPGAEYAALAAGA 114

Query: 100 IPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
           IPV++S  Q+  +++L  + G     A+Q DTG +RLGL  ++A          +  +  
Sbjct: 115 IPVLNSREQVEGWARLGRAVGRPLAAAIQFDTGMSRLGLPPEDAAWAFAPEGPIRWIEPR 174

Query: 159 LIISHLACADDPSSHVNSVQLERFRTLISHYK-GIEASLASSSGILLGPNYHFQLTRPGI 217
           LI+SHLA AD P    N+ Q + F  +++H   G+  SLA+S+G  LG +YH+ L R G 
Sbjct: 175 LILSHLAVADTPGHAGNARQRQAFERILAHAPQGVARSLANSAGCWLGQDYHYDLCRVGA 234

Query: 218 SLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
           +L+G     + +  MQ VV    R+I  R   AG  V YG          +A   +GYAD
Sbjct: 235 ALFGLDAS-SSAKAMQPVVEVTGRVIQTRAVPAGAGVGYGWAVTAAEGMRLATIGVGYAD 293

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQ 335
           G+P  LS           +GG  F +G ++P +G+I+MD  + D++      ++ GD+++
Sbjct: 294 GWPRQLS----------AVGGAAF-EGRLLPFVGRISMDSLVVDVSALPPDALKPGDHVE 342

Query: 336 IFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           + GP+   + +AL   T +Y+++ R+G R  + Y 
Sbjct: 343 LLGPNRPPEQLALEGATIDYEVIARLGRRLCREYV 377


>gi|218459378|ref|ZP_03499469.1| alanine racemase protein [Rhizobium etli Kim 5]
          Length = 255

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 120/252 (47%), Positives = 168/252 (66%), Gaps = 2/252 (0%)

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
            +P AL VDTGFNRLGL + +A+    +          L++SHLAC DDP++ +N  QLE
Sbjct: 1   DYPCALHVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACGDDPTNAMNRQQLE 60

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
            FR + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG      ++PM+ V TAEA
Sbjct: 61  SFRRVTAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGMANPMRPVATAEA 120

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RII +R   AGE VSYG   +L RDS +A+ + GYADGY  + S        +V  GG+G
Sbjct: 121 RIIQVRTVGAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQSSGGVPLRQAVPQGGQG 180

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
           FI G+ VP+ G+ITMD+T+FD+TD     +  GDY+++FG ++ LDDVA A+GT  Y++L
Sbjct: 181 FIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKNMPLDDVARAAGTIGYEIL 240

Query: 359 VRIGTRYAKFYT 370
             +G R+ + Y 
Sbjct: 241 TSMGLRHERRYV 252


>gi|83591223|ref|YP_431232.1| alanine racemase [Moorella thermoacetica ATCC 39073]
 gi|83574137|gb|ABC20689.1| alanine racemase [Moorella thermoacetica ATCC 39073]
          Length = 409

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 154/387 (39%), Gaps = 44/387 (11%)

Query: 8   RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            + I+ TAL +N  ++ AL + + R  AV+K +AYG G  ++A    +AG     VT++ 
Sbjct: 14  WITIEATALAHNLKAVKALLAPSTRLLAVIKADAYGAGAVEVARIFLDAGADYLGVTTLA 73

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYA 125
           EG++LR     A + ++  + P +        L   +SS        +   + G      
Sbjct: 74  EGLELRRAGIAAPVLLMSPLLPEELPAAIAAGLTLTVSSRSGAEAIAAAAAATGHRARVH 133

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L+V+TG  R GL                  +L  + SHLA A  P++    +    F+ +
Sbjct: 134 LKVETGLQRTGLEAAAVAPLAREILTWPGVELEGVYSHLAEAARPAAARRQM--ACFQQV 191

Query: 186 ISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTA 238
           ++  +          + +S+G+L  P  H  + R G  LYG        +   ++     
Sbjct: 192 LAELEEEHIAIPLRHICNSTGLLTHPEMHLDMVRTGTLLYGQFPYQAPRRGLALKDPWQF 251

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY-------PLTLSGLDSEHS 291
           +ARI+ I    AG  V YGG   + + + +AV  +GYADG+       P  L+ L     
Sbjct: 252 KARILFIHDVAAGTPVGYGGDYVVKKATRLAVIPVGYADGFALTAVARPKNLNDLARYLV 311

Query: 292 PSVFL--------GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
            +           G    I G   P++G++ M ++M D+     +EVG  + +       
Sbjct: 312 KTFLAYLGRGGGEGTTVIIGGRTAPVVGRVGMQLSMVDVGHLPEVEVGQIVTLDIRRPTA 371

Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370
                              +R  + Y 
Sbjct: 372 ------------------SSRLPRVYC 380


>gi|224532829|ref|ZP_03673444.1| alanine racemase [Borrelia burgdorferi WI91-23]
 gi|224533969|ref|ZP_03674553.1| alanine racemase [Borrelia burgdorferi CA-11.2a]
 gi|224512218|gb|EEF82604.1| alanine racemase [Borrelia burgdorferi WI91-23]
 gi|224512805|gb|EEF83172.1| alanine racemase [Borrelia burgdorferi CA-11.2a]
          Length = 372

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 152/357 (42%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 27  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 87  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 204

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++  I+    GE
Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVTFIKNVKKGE 264

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG    + Y
Sbjct: 314 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 370


>gi|320334786|ref|YP_004171497.1| Alanine racemase [Deinococcus maricopensis DSM 21211]
 gi|319756075|gb|ADV67832.1| Alanine racemase [Deinococcus maricopensis DSM 21211]
          Length = 375

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 163/366 (44%), Gaps = 26/366 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTS 64
             R  I    L  N  ++  +SG     A VK +AYG G   +A AL +   V  F V  
Sbjct: 25  RARADIHAGHLVRNARALAQVSG-TPLIAPVKADAYGHGVNLVARALEDEPSVWGFAVAM 83

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
             E   L   T +  + ++    P +   + D  +   +SS  ++               
Sbjct: 84  PREAAALAPLT-RKPVLLMTPAAPEEVGPLADLGVRLSVSSAEEVAALPAHA------RV 136

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG NRLG    EAL        + L  L  + +HLACADDP   ++  Q+  F  
Sbjct: 137 HLKVDTGMNRLGAKPPEALRLGAALEARGL--LEGVYTHLACADDPDLRMSEAQIHAFAA 194

Query: 185 LISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTDK-INKSHPMQTVVTAEARI 242
           + + +    A   + +G+L LG      L RPG++LYG   + +     ++  +   AR+
Sbjct: 195 VRAAFPAALAHAQNGAGVLALGRVPGLDLARPGLALYGYPPEHLRARAELRPAMRVTARV 254

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
             +    AGE VSYG   +   D+ +A    GYADGYP   +G             +  +
Sbjct: 255 GFVHTVPAGESVSYGALWRAPEDTRVATVQFGYADGYPRGATGR-----------ARAVV 303

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRI 361
           +G +  +LG+I MD  M D+   L + VG+++++FG D +   D+A  S    Y++L  I
Sbjct: 304 RGEVRDVLGRICMDQFMLDV-QGLDVRVGEWVEVFGWDVLSASDLAAWSDGIEYEVLTGI 362

Query: 362 GTRYAK 367
           G R  +
Sbjct: 363 GARVER 368


>gi|167465430|ref|ZP_02330519.1| alanine racemase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 314

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 125/308 (40%), Gaps = 28/308 (9%)

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYS-KLMSCGVSHPYALQVDTGFNRL 135
           I VL    P   ++    N+   + +      +     +  +        ++VD+G +R+
Sbjct: 1   ILVLGYTAPDGLEMALKNNITLTVFNEEMLRGMELLQGQAEALDKRLRVHVKVDSGMHRI 60

Query: 136 GL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI-- 192
           GL   +EA+ +           L  + +H ACAD+       +Q E+F  ++   K +  
Sbjct: 61  GLYKEEEAVSYLKQIARMPHICLEGLFTHYACADEADKAYTRLQYEKFSRVVHEVKRLGI 120

Query: 193 ---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEARIILIR 246
                   +S+  +  P   + + R GI++YG        H +   + V++ + R+I  +
Sbjct: 121 DIPYIHAGNSAAAIDTPELVYNMARLGIAMYGLYPSEKVDHTIIKLEPVMSLKTRMIHDK 180

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  +SYG       +  I    IGYADG+   LS                 I+G  
Sbjct: 181 WLSEGSGISYGTIYHTKGEERIGTLPIGYADGFSRMLS-----------TKANALIRGKR 229

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIG 362
           VPI+G+I MD  M +IT     E GD + + G      I  +++A   GT NY++   + 
Sbjct: 230 VPIVGRICMDQCMLNITGVPEAEAGDEVVLIGRQGDEVIPAEEIAGHLGTINYEVTCMMA 289

Query: 363 TRYAKFYT 370
            R  + Y 
Sbjct: 290 HRIPRVYV 297


>gi|289674439|ref|ZP_06495329.1| alanine racemase [Pseudomonas syringae pv. syringae FF5]
          Length = 271

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 86/274 (31%), Positives = 126/274 (45%), Gaps = 8/274 (2%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL  A    F V  
Sbjct: 2   RPARAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQALQ-AQADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +EE ++LR    +A + +L G     E   I + +L  V+ +  QL    +    G    
Sbjct: 60  IEEALELRAAGIRAPVLLLEGFFEADELAQIVEHDLWTVVHATWQLEAIEQAR-LGKPIT 118

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++DTG +R+GL   E                 +++SH + AD+ +S  +  QL  F 
Sbjct: 119 VWLKLDTGMHRVGLHPHEYQAGYQRLLATGKVARIVLMSHFSRADELNSGCSDEQLAVFE 178

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240
           T        E SL +S  +L  P      +RPGI LYG T        +  +Q V+T E+
Sbjct: 179 TFRKGLAA-ETSLKNSPAVLGWPQIPSDWSRPGIMLYGATPFDQAHPLADRLQPVMTLES 237

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
           +II +R+   GE V YG      R S I V A+G
Sbjct: 238 KIISVRELPVGEPVGYGATFVCDRPSRIGVVAMG 271


>gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 829

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 182/384 (47%), Gaps = 28/384 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            S    RL +DL A+++N     AL        AV+K  AYG    ++A AL ++G+   
Sbjct: 455 ESMAPRRLLVDLDAIRDNITRFRALCGPEVAILAVLKAWAYGTELPRLAAALQDSGIDWI 514

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119
            V++ +EG  +R       + V+  + P +        + P+I S+P      + L S G
Sbjct: 515 GVSAADEGAVIRRAGVHRPVLVML-MDPDEVDKAVRWRVTPLIYSLPFAQALVRTLQSMG 573

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQ 178
                 L+++TG  RLG++ +EAL       +  +  ++ +++HLA ADDP++      Q
Sbjct: 574 AHLEVHLEIETGMGRLGVAPEEALAAARLLRDSGVVTVTGVMTHLAGADDPAADDETRAQ 633

Query: 179 LERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHP 231
           LERF  +++         +    A++SG +  P   + + R G+ L+G   +  + ++  
Sbjct: 634 LERFDAVMARLHQELGTPLLVHAAATSGAVRFPQSRYGMVRLGLGLFGLHPSPAVAEAIE 693

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEH 290
           ++  V   +R++ +R+   G+ + Y G   ++ +   I + A GY DG P   S      
Sbjct: 694 LELAVAFISRLVQVREYGRGQRIGYNGTYVVSAERQRIGIVAAGYNDGVPWRFSNR---- 749

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDV 346
                  G+  I+G  + +LG+++MD    D+       VGD + IF    G  ++ +  
Sbjct: 750 -------GEVMIQGRRLAVLGRVSMDSMAVDLDPLPEATVGDEVLIFGAYEGQVLRPEQA 802

Query: 347 ALASGTTNYDLLVRI-GTRYAKFY 369
           AL +GT  YDLLV++ G R  + +
Sbjct: 803 ALQAGTIPYDLLVQVDGRRVQRIF 826


>gi|221217500|ref|ZP_03588971.1| alanine racemase [Borrelia burgdorferi 72a]
 gi|225549860|ref|ZP_03770822.1| alanine racemase [Borrelia burgdorferi 118a]
 gi|221192778|gb|EEE18994.1| alanine racemase [Borrelia burgdorferi 72a]
 gi|225369551|gb|EEG99002.1| alanine racemase [Borrelia burgdorferi 118a]
          Length = 372

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 152/357 (42%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 27  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 87  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 204

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE
Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 264

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  I     + Y
Sbjct: 314 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIAKYEKRKY 370


>gi|216264434|ref|ZP_03436426.1| alanine racemase [Borrelia burgdorferi 156a]
 gi|215980907|gb|EEC21714.1| alanine racemase [Borrelia burgdorferi 156a]
          Length = 372

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 152/357 (42%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 27  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 87  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 204

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE
Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 264

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++ + +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG    + Y
Sbjct: 314 VCMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 370


>gi|313900105|ref|ZP_07833605.1| alanine racemase [Clostridium sp. HGF2]
 gi|312955157|gb|EFR36825.1| alanine racemase [Clostridium sp. HGF2]
          Length = 381

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 170/380 (44%), Gaps = 33/380 (8%)

Query: 9   LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            +I    ++ N   +   L+   R  AVVK NAYG G E    A+ +     +   +++E
Sbjct: 11  AEIHTERIRENVMQLKRHLTAGTRFMAVVKGNAYGHGIEPCVQAMDDL-CDWYGTATMQE 69

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
            +++R  + +  I V   +   +  +  + N+     S   L+  S+  +   +     L
Sbjct: 70  ALRVRSVSGEKPILVFGYVSDEEIHLAAENNITLSAFSATFLSHISECCAGMNLKAAVHL 129

Query: 127 QVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHL---ACADDPSSHVNSVQL 179
           ++DTGF+R+G+    S+ + ++     F+    +++ + +HL   A ++        +Q 
Sbjct: 130 KLDTGFHRMGIDCCSSIADCVEQLLPLFSLPNIEITGMYTHLVYGAGSNQRELAFTELQF 189

Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPMQ 233
           +RF++ I   +  +       + +S   +  P+ H  + R G  ++G  +    +  P++
Sbjct: 190 QRFQSCIRALQERKIDTGICHICNSKAAIHAPDMHMDMVRVGAYIFGLASASEQRLIPLR 249

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+  +ARI+L+R   AGE V YG      +   IAV A G+ADGY   +         +
Sbjct: 250 EVLVWKARIVLLRDIAAGEGVGYGHAFIAKQPVRIAVLAAGFADGYRRCI---------A 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS--- 350
                   I G   P++GK+ MDM M D+TD  +++VG+Y  + G D     V+      
Sbjct: 301 QSPQSYVSIHGRPAPLIGKVCMDMFMVDVTDIEAVQVGEYALLSGDDGT-GAVSSYLLGQ 359

Query: 351 ---GTTNYDLLVRIGTRYAK 367
              GT   ++ V +  R  +
Sbjct: 360 IIQGTAG-EIAVGMSDRVQR 378


>gi|332184182|gb|AEE26436.1| Alanine racemase [Francisella cf. novicida 3523]
          Length = 365

 Score =  281 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 147/372 (39%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I++  L+NN   +    GN R    VK NAYG G E I    ++  V  F V +V E 
Sbjct: 4   LEINIQTLRNNIKLIKEYVGNVRICFPVKANAYGHGLELIVQHSHDL-VDFFAVANVLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQ 127
            ++ L   Q  + +   I       I   N+   I     +    K        P   + 
Sbjct: 63  FRV-LDVVQKPVMIFGVIEYNYIDRILSKNIRVSIQDYNDIEKLEKFAKYYNKKPFVHVN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      +F      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQKAFESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVE 181

Query: 188 HYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             K     I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKELSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLIS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
            ++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 EVVKIITLQEGEGVGYSLIYRGYEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINENDVKVGDIVELISDIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRVIR 362


>gi|297618459|ref|YP_003703618.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680]
 gi|297146296|gb|ADI03053.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680]
          Length = 400

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/359 (23%), Positives = 137/359 (38%), Gaps = 25/359 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M +N ++  ++D+ AL +N  ++ +L   N R  AV+K NAYGLG    A  L   GV  
Sbjct: 4   MPNNRWI--EVDIDALVHNLEAVRSLLKENTRLIAVLKANAYGLGAVGTARVLARHGVDY 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
           F VT  EE  +LR       I V       + +   +  L   ++S       S+  S  
Sbjct: 62  FAVTFPEEAFELREGGISTDILVFAPAGEREIEKAVEQGLTLTVASYRDYRLASEAASRF 121

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                  L++DTG  R G++   AL+        +   L  + +H A A   S      Q
Sbjct: 122 NKKVRIHLKIDTGLGRFGVTADRALELARLIHYDQWLVLEGLYTHFAEAGARSPKFTQSQ 181

Query: 179 LERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231
            E+ +  +        +       +S+  L  P  H    R G  L G      +     
Sbjct: 182 FEQLQKTVDALTSNGIRPALIHCCNSAAALRFPEMHLDAVRIGTLLGGQHPAGHVPNKIK 241

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG-----YPLTLSGL 286
           ++     +AR+  +R+  AG  + Y    +    S IAV  +G+ADG          S  
Sbjct: 242 LKNPYRFKARVTAVREMPAGSYLGYYRTYRTRAASKIAVVPVGFADGLGLEALSRPGSWF 301

Query: 287 DSEHSPSVFLGG---------KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           D     +  +G          K  I     P+ GK+ M   + ++     +E G  +++
Sbjct: 302 DLFKIIAKLVGSYLNLSRFTVKVKIGKDEYPVRGKVFMQFCLVELPPDFPVEPGTVVEV 360


>gi|241668785|ref|ZP_04756363.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877316|ref|ZP_05250026.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843337|gb|EET21751.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 365

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 155/374 (41%), Gaps = 30/374 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E+I    ++  V  F V +  E 
Sbjct: 4   LKISKQTLRNNIKIIREYVGNAKICFPVKANAYGHGIEEIVENTHDL-VDFFAVANSLEA 62

Query: 69  VKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
              R+       + V   I+    + +   N+   I     +    ++           +
Sbjct: 63  F--RVTAITKKPVLVFGVIYYEYLERMVSENIRVSIQDYDDIEKLEQIAKELNKKIYVHI 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            V+TG NR+G+   +       ++N K   L  + SHLACAD+     N+ Q +RF  ++
Sbjct: 121 NVNTGMNRMGVCYNDVCRTIKRAYNSKWVVLEGVYSHLACADNRDHPTNTKQKKRFSEIV 180

Query: 187 SHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAE 239
            + K     I   L++S G L      + + RPGI +YG   +         ++ +    
Sbjct: 181 EYAKELSQDIICHLSNSYGFLGDKEICYDMVRPGILIYGFLPEFYVERSIREIKPIARLL 240

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++++ I +   G+ V Y    +      +AV  IGY DG+P  L              G 
Sbjct: 241 SKVVKIIELEEGDGVGYSMIYRGFDGEKVAVIPIGYGDGFPRELGDR-----------GF 289

Query: 300 GFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDIKLDD-----VALASGTT 353
             I   M P+ G+++MD     +  +  +++VGD +++   DI  +      +A    T 
Sbjct: 290 VNIDNVMYPMAGRMSMDGLTVSLGHNEHNVKVGDVVELI-SDIPRNRNSAFLMAKQVNTI 348

Query: 354 NYDLLVRIGTRYAK 367
            YD++  +  R  +
Sbjct: 349 EYDIMSTLNDRIIR 362


>gi|195941892|ref|ZP_03087274.1| alanine racemase (alr) [Borrelia burgdorferi 80a]
          Length = 372

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/357 (23%), Positives = 151/357 (42%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 27  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 87  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 204

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++  I+    GE
Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVTFIKNVKKGE 264

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++ + +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG    + Y
Sbjct: 314 VCMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 370


>gi|85708650|ref|ZP_01039716.1| alanine racemase [Erythrobacter sp. NAP1]
 gi|85690184|gb|EAQ30187.1| alanine racemase [Erythrobacter sp. NAP1]
          Length = 355

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 187/365 (51%), Gaps = 30/365 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L++D  ALK+NW  ++ +SG+A   A VK + YGLG     P L  AG ++FFV + +E 
Sbjct: 18  LRVDTEALKDNWRMLDRMSGDAGAGAAVKADCYGLGVSICVPTLVEAGCRNFFVANWDEA 77

Query: 69  VKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            +L  Y    +I VL G + P +      + ++PVI+S+ Q    +KL +        L 
Sbjct: 78  EELSHYVAPEQIAVLQGPVTPQEADFAKASGILPVINSIHQ----AKLWTKAGGGTCHLM 133

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG NRLG++  +  D    + +     + + +SHLA AD+    +N+ QL  +R  + 
Sbjct: 134 IDTGINRLGIAPSDISDPAIAALD-----IDVAMSHLASADE-DGPMNARQLALYRECLG 187

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             +    SLA+S+GI LG +Y F LTRPG++LYGG  +      ++ V   +A ++  R 
Sbjct: 188 SVRHKRESLANSAGIALGMDYAFDLTRPGLALYGGIARPELEGRIKQVAYIKACVLQTRS 247

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AG+ V Y G+   +    +   +IGYADG+                 G     +G  +
Sbjct: 248 LKAGDAVGYNGEFVASEPMRVGTISIGYADGFLRARG-----------PGEAFMFEGKRL 296

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD--DVALASGTTNYDLLVRIGTRY 365
           P+LGK++MDM + D+  +  ++ GD++     D+  D  + A  S  + Y+LL  +G R 
Sbjct: 297 PLLGKVSMDMVVVDLAHAPEVKEGDWL-----DVPFDLLNAARQSSVSQYELLTVLGRRL 351

Query: 366 AKFYT 370
            + ++
Sbjct: 352 -RHWS 355


>gi|91224603|ref|ZP_01259864.1| alanine racemase [Vibrio alginolyticus 12G01]
 gi|91190491|gb|EAS76759.1| alanine racemase [Vibrio alginolyticus 12G01]
          Length = 409

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 142/381 (37%), Gaps = 34/381 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I+L   ++N     +   G  +  AV+K +AYG G   + P +    +    V S 
Sbjct: 45  AWLEINLGQFRDNIEQFKSHMDGKTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAVASN 104

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124
            E   +R    + ++  +     G+ + + D N+  +I +  Q    SKL    G     
Sbjct: 105 AEAQTVRDSGFKGQLMRVRSADIGEIEAVIDLNVEELIGTAEQAKALSKLAEKAGKEIKV 164

Query: 125 ALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L + D G  R G  ++ +           +    +  I++H    +         +L  
Sbjct: 165 HLALNDGGMGRNGVDMTTEAGKKEALEIAQQAGVNIVGIMTHFPNYNADDV---RQKLAS 221

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F+   +            I   +A+S   L  P     + RPG  LYG     N  +P  
Sbjct: 222 FKDSSAWLIKEANLKRDNILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NPEYP-- 278

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y      +++SL+A   +GY+DGYP  +          
Sbjct: 279 SIVSFKTRVASVHHLPKNSTVGYDSSYTTSKESLMANIPVGYSDGYPRKMGNT------- 331

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    + G  +M+ TM D+T    +E G  + +FG      I   ++   
Sbjct: 332 ----AEVLINGQRAKVAGVASMNTTMVDVTGIKDVEPGSEVVLFGSQQGKTISAAEMEKH 387

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    G+   + Y 
Sbjct: 388 AEVIFPELYTVWGSANPRVYV 408


>gi|119717707|ref|YP_924672.1| alanine racemase [Nocardioides sp. JS614]
 gi|119538368|gb|ABL82985.1| alanine racemase [Nocardioides sp. JS614]
          Length = 380

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 144/373 (38%), Gaps = 31/373 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL A+ +N   +   +      AVVK + +G G  ++A      G     VT+++E
Sbjct: 16  RPDIDLAAVAHNTRLLAGRATG-ELMAVVKADDFGHGAVELARTALANGATWLGVTTIDE 74

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR     A +                  +   +  +P L       +        L 
Sbjct: 75  ALALRAAGLTAPLLSWLNPVDADLAAAVRAGVDLGVPGLPHLD----ATTAARGARVHLH 130

Query: 128 VDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           VD G  R G +             +  +   Q+  ++ HL CA+DP+   N++   RF  
Sbjct: 131 VDAGMARDGAAPATWGQLCRAARRAEQRGEIQVVGVMGHLGCAEDPTDECNALGRTRFAW 190

Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            +     +  +     LA+++  L  P  H  ++R G  L G       +  ++  +T  
Sbjct: 191 ALETARAAGLRPAHRHLAATAATLTDPRSHHTMSRVGAGLVGIDPS--HTTRLRPALTLI 248

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A ++ +R+   G  V YG   + +  + + +  +GYADG P   SG              
Sbjct: 249 APVVQVRRVRGGTPVGYGHAYRTSAATHLGLVPLGYADGLPRLASGRAEVLVRGRRRPVV 308

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
           G I           +MD  + D+ +   ++VG+ + +FGP    +  + + A  S T  +
Sbjct: 309 GRI-----------SMDQLVVDLGERP-VDVGEGVTVFGPGDAGEPTVAEWAAWSETIEH 356

Query: 356 DLLVRIGTRYAKF 368
           +++  IG R  + 
Sbjct: 357 EIVTGIGARVPRR 369


>gi|317402544|gb|EFV83110.1| alanine racemase [Achromobacter xylosoxidans C54]
          Length = 386

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 154/375 (41%), Gaps = 30/375 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA---RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             L  ++D +A+ +N   + A   ++   R  A VK +AYG G  ++ PAL +       
Sbjct: 21  RPLHARVDASAVAHNLVRLRAALPDSDAPRLWATVKADAYGHGLARVLPALRD--ADGLA 78

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGV 120
           V  ++E    R       + V  G++   + ++ DT +L  VI+   QL + ++      
Sbjct: 79  VLHLDEARACRQLGWNGPVLVYGGLYSPADTLLLDTPDLHLVITHAAQLQWLAQ-SPARE 137

Query: 121 SHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                L+     +  G    +   A +       + L      ++H A AD+      + 
Sbjct: 138 RPAIWLRFAGDIHHTGFCADDYRAAFEQARKLAARGLVSEIGHLNHYARADEADGVGQAD 197

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPN--YHFQLTRPGISLYGGTDKINKSHPM--- 232
               FR ++    G   S ++S+ +L         Q  RPG++LYG +   ++S      
Sbjct: 198 --ACFREVVRGLPG-PVSTSNSAAVLGHAGLAAGTQWVRPGLALYGASPFADRSAAQLAL 254

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  ++  ++++ I++  AG  V Y G         + +   GYADGYP            
Sbjct: 255 RPAMSLHSQVVGIQRVRAGAGVGYSGAFVAPATMDVGIVTCGYADGYPRHA--------- 305

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASG 351
               G    + G    +LG+++MDM   D+       +G  + ++G D   +++VA+A+G
Sbjct: 306 --PTGTPVMVAGVRTRLLGRVSMDMMAVDLDPIPQAAIGSPVTLWGADGPPVEEVAMAAG 363

Query: 352 TTNYDLLVRIGTRYA 366
           T    LL  +  R  
Sbjct: 364 TIAAQLLTGLSARVP 378


>gi|225552449|ref|ZP_03773389.1| alanine racemase [Borrelia sp. SV1]
 gi|225371447|gb|EEH00877.1| alanine racemase [Borrelia sp. SV1]
          Length = 372

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/357 (22%), Positives = 150/357 (42%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 27  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILM 86

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P ++    L    K  +         L++D G NR G+ + +
Sbjct: 87  YIKVDKKEIKNLIKFELVPFVADFEYLFSIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  + SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 147 ALEIATYIQNSKFLELEGVCSHLPSTENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 204

Query: 197 ASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+       F + RPG+ LYG         P    + V++  ++II I+    GE
Sbjct: 205 SNSGHIINYKLSPQFNMVRPGLILYGYCQSPKNKKPALNFKPVLSLFSKIIFIKNVKKGE 264

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++ + +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG    + Y
Sbjct: 314 VCMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 370


>gi|146743652|gb|ABQ43057.1| alanine racemase [Borrelia bissettii]
          Length = 366

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 150/357 (42%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    GN    A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 21  IKNKIGNKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILI 80

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P ++    L    K  +         L++D G NR G+ +  
Sbjct: 81  YIKVDKKEIKNLIKLELVPFVADFEYLFLIEKECALQKNKLKVHLKIDIGMNRYGIKIDS 140

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SL 196
           AL+      N K  +L  + SHL   +D  +     Q+E+F   +   K          +
Sbjct: 141 ALEIATYIQNSKFLELEGVCSHLPSTEDFKT--TQKQIEQFLFFLEKLKQKNINPKFVHI 198

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGE 252
           ++S  I+    +  F + RPG+ LYG              + V++  +++I I+    GE
Sbjct: 199 SNSGHIIDYKLSSQFNMIRPGLILYGYCPSSKNKKLALNFKPVLSLFSKVIFIKNVKKGE 258

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 259 KISYSGTFQAKEDIKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 307

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++T+ +I   L ++ G  ++I    + +D+++  S  +NY+LL  IG    K Y
Sbjct: 308 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSNYELLCNIGKYEKKKY 364


>gi|146743624|gb|ABQ43043.1| alanine racemase [Borrelia burgdorferi]
          Length = 358

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/351 (23%), Positives = 152/351 (43%), Gaps = 23/351 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 21  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 80

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 81  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 140

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 141 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 198

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE
Sbjct: 199 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 258

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 259 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 307

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           + M++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG+
Sbjct: 308 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGS 358


>gi|325291380|ref|YP_004267561.1| Alanine racemase [Syntrophobotulus glycolicus DSM 8271]
 gi|324966781|gb|ADY57560.1| Alanine racemase [Syntrophobotulus glycolicus DSM 8271]
          Length = 407

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 147/353 (41%), Gaps = 24/353 (6%)

Query: 7   LRLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L +++DL A+ +N W     LS   R  AVVK +AYGLG   +A AL   G ++F VT+V
Sbjct: 4   LWIEVDLDAVVHNYWEIQKKLSPGTRCLAVVKADAYGLGAVAVAQALQEEGCREFAVTTV 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPY 124
           EEG  LR    +  I VL    P   +      L   +     +    ++ +   +    
Sbjct: 64  EEGAILRENGIEGMILVLGPTRPADWESAIRKELSLSLPEASWVPLLEEICAKHHAEINV 123

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+++TG  R GL +             +  ++    +H A A    +     Q  +F +
Sbjct: 124 HLKIETGMGRTGLMVGILPQLAGFLQTARFVKVEGAFTHFARAAQRDNAYTKRQYGKFLS 183

Query: 185 LISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVT 237
                +G+        + +S+  L  P  H +  R G  L G         S  ++    
Sbjct: 184 ACERLEGLGINIPIKHVCNSAAFLDFPEMHHEFVRVGTLLLGHLPSQFFAGSIELKDPWK 243

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY-------PLTLSGLDSEH 290
           A+ARI+ IR+   G  V Y    +  +D+ +AV + GY DG+       P  L+ L    
Sbjct: 244 AKARILYIREVPKGTFVGYQSLYRCKKDTRLAVISAGYTDGFGVEPRLVPQGLADLMKII 303

Query: 291 SPSVFLGGKGF-------IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
             ++   G  +       + G  V + GKI M +T+ DI  +   + GD +++
Sbjct: 304 IKNIAAYGGIYLGREKLTLNGRPVKVAGKIGMQLTVLDIG-AAECQAGDIVEV 355


>gi|328676829|gb|AEB27699.1| Alanine racemase [Francisella cf. novicida Fx1]
          Length = 365

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 147/372 (39%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I    L+NN   +    G+A+    VK NAYG G E I    ++  V  F V +V E 
Sbjct: 4   LEISAQTLRNNIRIIKEYVGSAKICFPVKANAYGHGLELIVEHSHDL-VDFFAVANVLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQ 127
            ++ L   +  + +   I       I   N+   I     +    K        P   + 
Sbjct: 63  FRV-LDVVEKPVMIFGVIEYNYIDRILSKNIRVSIQDYNDIEKLEKFAKYYNKKPFVHVN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF  ++ 
Sbjct: 122 LNTGMNRMGVDYSDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDGIVE 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRAIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|311744950|ref|ZP_07718735.1| alanine racemase [Algoriphagus sp. PR1]
 gi|126577457|gb|EAZ81677.1| alanine racemase [Algoriphagus sp. PR1]
          Length = 384

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 165/386 (42%), Gaps = 37/386 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I   A + N   + +  G +    AVVK NAYG G +++      AG++ F   S +E
Sbjct: 7   LEISAKAYRQNIRYIRSEIGPSTVISAVVKGNAYGHGIQQMVEIAEKAGIRHFSTFSSDE 66

Query: 68  GVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
             ++ R    ++ I +L  ++P +   I    +   +    +L     +  S G+     
Sbjct: 67  AWEVFRCSKKKSEIMILGMLYPEEMSDIIKAGINFYVYDFRRLELAVTISKSLGIQAKIH 126

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVN-SVQLERFR 183
           ++++TGF+R G                    QL  + SH A A+  S+ V    Q+E + 
Sbjct: 127 IELETGFHRTGFEWSSREKLATYLKEQMDHIQLKGLCSHYAGAESVSNFVRVKNQIEVYN 186

Query: 184 TLISHY--KGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTD------------KI 226
              +++  KGI       A S+  L+ P     + R GI+ YG                 
Sbjct: 187 NFKTYFNQKGIHFEKYHTACSAATLIFPETIMDMVRIGIAGYGFWPTKETFFAKLNSLPK 246

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +P++ +V+ ++ ++ I+    GE V YG      ++  +A+  +GYA GY   LS  
Sbjct: 247 ANKNPLKRLVSWKSTVMSIKPVKMGEFVGYGNSFMALQNMRLAIVPVGYAHGYSRLLSNQ 306

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIK 342
                      G+  I+G    ++G +TM+    +IT+  +IEVGD + + G     +I 
Sbjct: 307 -----------GQVLIRGKFCNVVGTVTMNTIALNITNLKNIEVGDEVVLIGKQGNKEIT 355

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKF 368
           +   + ++   NY+LL R+     + 
Sbjct: 356 VASFSESTQQVNYELLTRLPKDIPRR 381


>gi|146743632|gb|ABQ43047.1| alanine racemase [Borrelia burgdorferi]
          Length = 361

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/351 (23%), Positives = 151/351 (43%), Gaps = 23/351 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 23  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 82

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 83  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 142

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 143 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 200

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE
Sbjct: 201 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 260

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 261 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 309

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           + M++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG 
Sbjct: 310 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGN 360


>gi|167626353|ref|YP_001676853.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|226711043|sp|B0TYB0|ALR_FRAP2 RecName: Full=Alanine racemase
 gi|167596354|gb|ABZ86352.1| Alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 365

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 154/374 (41%), Gaps = 30/374 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L NN   +    GNA+    VK NAYG G E+I    ++  V  F V +  E 
Sbjct: 4   LKISKQTLTNNIKIIREYVGNAKICFPVKANAYGHGIEEIVENTHDL-VDFFAVANSLEA 62

Query: 69  VKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
              R+       + V   I+    + +   N+   I     +    ++           +
Sbjct: 63  F--RVTAITKKPVLVFGVIYYEYLERMVSENIRVSIQDYDDIEKLEQIAKELNKKIYVHI 120

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            V+TG NR+G+   +       ++N K   L  + SHLACAD+     N+ Q +RF  ++
Sbjct: 121 NVNTGMNRMGVCYNDVCRTIKRAYNSKWIILEGVYSHLACADNRDHPTNAKQKKRFSEIV 180

Query: 187 SHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAE 239
            + K     I   L++S G L      + + RPGI +YG   +         ++ +    
Sbjct: 181 EYAKELSQDIICHLSNSYGFLGDKEICYDMVRPGILIYGFLPEFYVERSIREIKPIARLL 240

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           ++++ I +   G+ V Y    +      +AV  IGY DG+P  L              G 
Sbjct: 241 SKVVKIIELEEGDGVGYSMIYRGFDGEKVAVIPIGYGDGFPRELGDR-----------GF 289

Query: 300 GFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDIKLDD-----VALASGTT 353
             I   M P+ G+++MD     +  +  +++VGD +++   DI  +      +A    T 
Sbjct: 290 VNIDNVMYPMAGRMSMDGLTVSLGHNEHNVKVGDVVELI-SDIPRNRNSAFLMAKQVNTI 348

Query: 354 NYDLLVRIGTRYAK 367
            YD++  +  R  +
Sbjct: 349 EYDIMSTLNDRIIR 362


>gi|229529606|ref|ZP_04418996.1| alanine racemase [Vibrio cholerae 12129(1)]
 gi|229333380|gb|EEN98866.1| alanine racemase [Vibrio cholerae 12129(1)]
          Length = 428

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 146/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  S N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|146743634|gb|ABQ43048.1| alanine racemase [Borrelia burgdorferi]
 gi|146743636|gb|ABQ43049.1| alanine racemase [Borrelia burgdorferi]
 gi|146743638|gb|ABQ43050.1| alanine racemase [Borrelia burgdorferi]
          Length = 359

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/350 (24%), Positives = 151/350 (43%), Gaps = 23/350 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 23  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 82

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 83  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 142

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 143 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 200

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE
Sbjct: 201 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 260

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 261 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 309

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           + M++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG
Sbjct: 310 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 359


>gi|146743626|gb|ABQ43044.1| alanine racemase [Borrelia burgdorferi]
          Length = 355

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/350 (24%), Positives = 151/350 (43%), Gaps = 23/350 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 18  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 77

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 78  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 137

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 138 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 195

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE
Sbjct: 196 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 255

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 256 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 304

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           + M++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG
Sbjct: 305 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 354


>gi|146743628|gb|ABQ43045.1| alanine racemase [Borrelia burgdorferi]
 gi|146743630|gb|ABQ43046.1| alanine racemase [Borrelia burgdorferi]
          Length = 358

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/350 (24%), Positives = 151/350 (43%), Gaps = 23/350 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 22  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 81

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 82  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 141

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 142 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 199

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE
Sbjct: 200 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 259

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 260 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 308

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           + M++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG
Sbjct: 309 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 358


>gi|54113967|gb|AAV29617.1| NT02FT0827 [synthetic construct]
          Length = 365

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 149/372 (40%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  V  F V +  E 
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
            ++     +  + V   I+    + +   N+   I     +    ++           + 
Sbjct: 63  FRV-TAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHIN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +   D  +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEDEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIVR 362


>gi|260772889|ref|ZP_05881805.1| alanine racemase [Vibrio metschnikovii CIP 69.14]
 gi|260612028|gb|EEX37231.1| alanine racemase [Vibrio metschnikovii CIP 69.14]
          Length = 407

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 147/382 (38%), Gaps = 28/382 (7%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +     L+I+L   K N     +    +++  AV+K +AYG G   + P +   G+    
Sbjct: 39  AQSNAWLEINLGQFKTNIEQFKSHINPSSKICAVMKADAYGNGIRGLMPTVIEQGIPCVA 98

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGV 120
           +TS  E   +R    Q ++  +      +   + + N+  +I +  Q    ++L    G 
Sbjct: 99  ITSNAEARAVRESGFQGQLMRVRSATINEIAAVAELNIEELIGTKQQAMDLAQLGQRLGT 158

Query: 121 SHPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                L + D G  R G  +S ++      +   +K  Q+  I++H    +         
Sbjct: 159 PIKAHLALNDGGMGRNGVDMSHEKGKQEALSITQQKGLQIVGIMTHFPNYNPDDIRAKLA 218

Query: 178 QLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
              +    +        + ++  +A+S   L  P     + RPG  LYG      +    
Sbjct: 219 TFNQHANWLVEQGPLKREEVQFHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---Y 275

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
             +V+ + RI  +     G+ V Y        D+++A   +GY+DGYP  +         
Sbjct: 276 LPIVSFKTRIASLHHLPTGKTVGYDSTHITDSDTVLANLPVGYSDGYPRKMGN------- 328

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                 +  I G    ++G  +M+ TM D++    ++ G  + +FG      I +DD+  
Sbjct: 329 ----KAQVLINGQWANVVGVTSMNTTMVDVSTIKGVKPGQEVVLFGAQGKKQISVDDIET 384

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
            S     +L    GT   +FY 
Sbjct: 385 HSDIIFPELYTIWGTANPRFYV 406


>gi|323190084|gb|EFZ75362.1| alanine racemase [Escherichia coli RN587/1]
          Length = 261

 Score =  278 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 129/273 (47%), Gaps = 18/273 (6%)

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLII 161
           + +  QL    +  S        +++DTG +RLG+  ++A  F H     K + Q   I+
Sbjct: 1   MHNEEQLAALEEA-SLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIV 59

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
           SH A AD+P       QL  F T      G + S+A+S GILL P  HF   RPGI LYG
Sbjct: 60  SHFARADEPKCGATEKQLAIFNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYG 118

Query: 222 GTD----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
            +             Q V++  + +I +R+  AGE V YGG     RD+ + V A+GY D
Sbjct: 119 VSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGD 178

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           GYP                G    + G  VPI+G++ MDM   D+      + GD + ++
Sbjct: 179 GYPRAA-----------PSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILW 227

Query: 338 GPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           G  + ++ +A  +  + Y+L+ R+ +R A  Y 
Sbjct: 228 GEGLPVERIAEMTKVSAYELITRLTSRVAMKYV 260


>gi|56707702|ref|YP_169598.1| alanine racemase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670173|ref|YP_666730.1| alanine racemase [Francisella tularensis subsp. tularensis FSC198]
 gi|254370208|ref|ZP_04986214.1| alanine racemase [Francisella tularensis subsp. tularensis FSC033]
 gi|81820797|sp|Q5NH94|ALR_FRATT RecName: Full=Alanine racemase
 gi|123359566|sp|Q14IP6|ALR_FRAT1 RecName: Full=Alanine racemase
 gi|56604194|emb|CAG45206.1| alanine racemase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320506|emb|CAL08589.1| alanine racemase [Francisella tularensis subsp. tularensis FSC198]
 gi|151568452|gb|EDN34106.1| alanine racemase [Francisella tularensis subsp. tularensis FSC033]
 gi|282158869|gb|ADA78260.1| alanine racemase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 365

 Score =  278 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 149/372 (40%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  V  F V +  E 
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
            ++     +  + V   I+    + +   N+   I     +    ++           + 
Sbjct: 63  FRV-TAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHIN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +   D  +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEDEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|32265965|ref|NP_859997.1| alanine racemase [Helicobacter hepaticus ATCC 51449]
 gi|32262014|gb|AAP77063.1| alanine racemase [Helicobacter hepaticus ATCC 51449]
          Length = 413

 Score =  278 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 165/370 (44%), Gaps = 27/370 (7%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++N F  +++D+ A KNN      ++GNA+  AV+K NAYG G  K+ P +    +    
Sbjct: 37  NTNSF--MEVDIKAFKNNIKVAKKIAGNAKVCAVLKANAYGAGISKVLPTIIEEKIPCVA 94

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120
           +TS EE   +R       I  +     G+ K     N+  V+ ++ Q      L    G 
Sbjct: 95  ITSNEEARVIRKMKYTGEILRIRTATMGEIKDGLKYNITEVLGNLDQAKKVDSLAKTIGK 154

Query: 121 SHPYALQVDT-GFNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
             P  +++++ G +R G+  S  +  +           ++  +++H    D      N  
Sbjct: 155 KLPIHIKLNSGGMDRNGIDLSTDKGKESAVKLATLPHLKIKGLMTHFPYDDTSKVKENLK 214

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
             E     +     ++        A+S   +  P     + RPG  +YG     +++ P+
Sbjct: 215 HFEEDTDFLISKAKLDRNKLVLHAAASYAAVQVPQSRLDMIRPGKLIYGYGG-GDENLPI 273

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q +++ ++++ +I +   G  VSY G   LTRDS +A   +GY DGY  +LS        
Sbjct: 274 QQIMSLKSQVAVINEYPKGSKVSYDGTHTLTRDSKLANIPVGYYDGYAKSLSNQ------ 327

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348
                GK  I+G+ VP++G++T +  M D+TD   I+ GD + +FG     +I   +   
Sbjct: 328 -----GKVLIRGHKVPVVGRVTKNTFMVDVTDYPDIKAGDEVVLFGKQCGNEITQAEFEK 382

Query: 349 ASGTTNYDLL 358
            +GT   + L
Sbjct: 383 GTGTILSETL 392


>gi|153830040|ref|ZP_01982707.1| putative alanine racemase [Vibrio cholerae 623-39]
 gi|148874480|gb|EDL72615.1| putative alanine racemase [Vibrio cholerae 623-39]
          Length = 428

 Score =  278 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 146/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  S N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANMPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|323341783|ref|ZP_08082016.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464208|gb|EFY09401.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 375

 Score =  278 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 157/375 (41%), Gaps = 31/375 (8%)

Query: 11  IDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +D   + NN   +  +     +  AV+K N YG G  ++A       +    V ++E+  
Sbjct: 9   VDEQRILNNTLKLREIIKPETKIIAVIKANGYGCGLVEVAHTCEKMKIDVLAVLNIEQAR 68

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128
            LR +     I +L        K + + +L+ VI +       ++  +  GV     ++V
Sbjct: 69  DLRKHGITTPILLLGATLESNFKYLIEYDLMQVIINHDYALKLNQFGLDHGVKVKTHVKV 128

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFRTL 185
           DTG +RLG+   E  D   + +  +  ++  I SH   A          + +QL+R++ +
Sbjct: 129 DTGLHRLGM---EDYDEIKSCYGLEGLEVCGIYSHFVEAQSYEGDAVAFSMLQLDRYKAV 185

Query: 186 ISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVV 236
           I   +  GI+     + +S  IL   +  F   R G+ ++G               + V+
Sbjct: 186 IDKLRHDGIDPKMTHIQNSPSILNFGDLGFDAVRCGMIMFGLYHPSQLEMSLNDGYEPVL 245

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + E+R+ ++R+   GE V YG   +   D ++A  + GY DG   +LS            
Sbjct: 246 SFESRVCMVRELKKGEFVGYGRTFQAEDDMMLATVSAGYCDGVMKSLS----------LN 295

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASG-TTN 354
           GG   I   + PI+G I M   M D+T      + D + +FG +   + D    +G + N
Sbjct: 296 GGHVVINDTLCPIVGDIAMSQFMVDVTGVP-CNLEDRVILFGHEKQTIYDYIGITGQSIN 354

Query: 355 YDLLVRIGTRYAKFY 369
            +L+  I     + Y
Sbjct: 355 -ELISHILYDIPRIY 368


>gi|262190944|ref|ZP_06049158.1| alanine racemase [Vibrio cholerae CT 5369-93]
 gi|262033181|gb|EEY51705.1| alanine racemase [Vibrio cholerae CT 5369-93]
          Length = 407

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 146/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  S N +  A++K +AYG G   + P +   G+    V
Sbjct: 40  QSNSWLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 99

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 100 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQAFDLAELAKQSGKT 159

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 160 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 219

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 220 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 276

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 277 SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 328

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 329 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 385

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 386 AELIFPELYTLWGTSNPRFYV 406


>gi|254374164|ref|ZP_04989646.1| alanine racemase [Francisella novicida GA99-3548]
 gi|151571884|gb|EDN37538.1| alanine racemase [Francisella novicida GA99-3548]
          Length = 365

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 149/372 (40%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I +  L+NN   +    G+A+    VK NAYG G E I    ++  V  F V +V E 
Sbjct: 4   LEISVQTLRNNITIIKEYVGSAKICFPVKANAYGHGLELIVEHSHDL-VDFFAVANVLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQ 127
            ++ L   +  + +   I       I   N+   I     +    K        P   + 
Sbjct: 63  FRV-LDVVEKPVMIFGVIEYNYIDRILSKNIRISIQDYNDIEKLEKFAKYYNKKPFVHVN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQQAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240
             K    GI   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQGIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRAIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|153827222|ref|ZP_01979889.1| alanine racemase, putative [Vibrio cholerae MZO-2]
 gi|149738872|gb|EDM53204.1| alanine racemase, putative [Vibrio cholerae MZO-2]
          Length = 428

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 146/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L++ L   ++N     +  S N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEVSLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|153802661|ref|ZP_01957247.1| alanine racemase, putative [Vibrio cholerae MZO-3]
 gi|124121789|gb|EAY40532.1| alanine racemase, putative [Vibrio cholerae MZO-3]
          Length = 428

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 146/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  S N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRLSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVIPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|94496351|ref|ZP_01302928.1| alanine racemase [Sphingomonas sp. SKA58]
 gi|94424097|gb|EAT09121.1| alanine racemase [Sphingomonas sp. SKA58]
          Length = 348

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 183/366 (50%), Gaps = 25/366 (6%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            LRL++D  AL +NW  +  +SG A   A +K N YGLG E++   L  AG +DFFV++ 
Sbjct: 7   PLRLRLDGDALVSNWRWLARMSGPAACGAAIKANGYGLGAEEVMRRLTRAGCRDFFVSNW 66

Query: 66  EEGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            E + L  L     R+ VL+G+      I   +   PV+ +  Q+  +            
Sbjct: 67  GEALALEPLMADGVRLSVLHGVRDEDMAIAVASRAKPVLCAPAQVARW----RDAGQKSC 122

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            + +DTG NRLGL  +        +       +  ++SHLA AD+    +N+VQ +RF  
Sbjct: 123 DVMMDTGMNRLGLDWR-----GDAAGMLAGLTIETVMSHLASADE-EVALNAVQRDRFVQ 176

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           +         SLA+S+GI L  +Y F LTRPGI+LYGG      +  ++ VV  +A+I+ 
Sbjct: 177 IALGVPAERYSLANSAGICLNADYRFDLTRPGIALYGGVPHAKAAGHIRQVVQPQAQILQ 236

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R+ +AG+ + Y       RD  +A+  +GYADGY    SG            G   + G
Sbjct: 237 RRRLIAGDSIGYNATFTAERDHEVAILNLGYADGYLRGFSGT-----------GAASVAG 285

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
             +P+LG+++MD+   D++    +  GD++ I   D  L   + ASG + Y+LL  +G R
Sbjct: 286 VRLPVLGRVSMDLAAIDVSAVPGLSEGDWVDI---DYDLPRASAASGLSQYELLTGLGAR 342

Query: 365 YAKFYT 370
           Y + + 
Sbjct: 343 YDRLWA 348


>gi|134302328|ref|YP_001122297.1| alanine racemase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|172044165|sp|A4IZ25|ALR_FRATW RecName: Full=Alanine racemase
 gi|134050105|gb|ABO47176.1| alanine racemase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 365

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 148/372 (39%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  V  F V +  E 
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
            ++     +  + V   I+    + +   N+   I     +    ++           + 
Sbjct: 63  FRV-TAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHIN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDSLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|208779130|ref|ZP_03246476.1| alanine racemase [Francisella novicida FTG]
 gi|208744930|gb|EDZ91228.1| alanine racemase [Francisella novicida FTG]
          Length = 365

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 149/372 (40%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I +  L+NN   +    G+A+    VK NAYG G E I    ++  V  F V +V E 
Sbjct: 4   LEISVQTLRNNITIIKEYVGSAKICFPVKANAYGHGLELIVEHSHDL-VDFFAVANVLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQ 127
            ++ L   +  + +   I       I   N+   I     +    K        P   + 
Sbjct: 63  FRV-LDVVEKPVMIFGVIEYNYIDRILSKNIRISIQDYNDIEKLEKFAKYYNKKPFVHVN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|229525903|ref|ZP_04415308.1| alanine racemase [Vibrio cholerae bv. albensis VL426]
 gi|229339484|gb|EEO04501.1| alanine racemase [Vibrio cholerae bv. albensis VL426]
          Length = 428

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 146/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  S N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARVVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|254372706|ref|ZP_04988195.1| alanine racemase [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570433|gb|EDN36087.1| alanine racemase [Francisella novicida GA99-3549]
          Length = 365

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 149/372 (40%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I +  L+NN   +    G+A+    VK NAYG G E I    ++  V  F V +V E 
Sbjct: 4   LEISVQTLRNNITIIKEYVGSAKICFPVKANAYGHGLELIVEHSHDL-VDFFAVANVLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQ 127
            ++ L   +  + +   I       I   N+   I     +    K        P   + 
Sbjct: 63  FRV-LDVVEKPVMIFGVIEYNYIDRILSKNIRISIQDYNDIEKLEKFAKYYNKKPFVHVN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             K    GI   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQGIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|229521424|ref|ZP_04410843.1| alanine racemase [Vibrio cholerae TM 11079-80]
 gi|229341522|gb|EEO06525.1| alanine racemase [Vibrio cholerae TM 11079-80]
          Length = 428

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 147/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  S N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRVSSLHHMPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G  V ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRVKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|296128394|ref|YP_003635644.1| alanine racemase [Cellulomonas flavigena DSM 20109]
 gi|296020209|gb|ADG73445.1| alanine racemase [Cellulomonas flavigena DSM 20109]
          Length = 394

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/380 (21%), Positives = 146/380 (38%), Gaps = 28/380 (7%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M +     L + L A+ +N   +   +   R  AVVK + +GLG   +A      G    
Sbjct: 15  MLAATRPVLTVRLDAVAHNARVLA--ASARRLMAVVKADGFGLGAADVARTALAHGADAL 72

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119
            V ++ E V+LR     A +                  +   + S+  L    S     G
Sbjct: 73  GVATLAEAVELRTARIGAPLLSWLDAPGADLSDAVLHGIDVAVPSLAHLEAAVSAGRRTG 132

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNS 176
                 L +D G  R G   +        ++  +L    ++  ++ HLACA       N+
Sbjct: 133 RGVDVHLYLDCGTARDGCPPETWPALCAAAWRAELAGAVRVVGVMGHLACAASLDPEANT 192

Query: 177 VQLERF-----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               RF     R   +  +     L +++ +L  P   F L+R G  L G          
Sbjct: 193 DATARFAHGVARARAAGLRPRVRHLGATAAVLGLPTTRFDLSRVGAGLVGIDPTGRYPV- 251

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++      A ++ +R   A   V Y    + +  + +A+  +GYADG P+T SG      
Sbjct: 252 LRAAAQVTAPVVQVRDVGADVGVGYDHTYRTSAPTRLALLPLGYADGLPVTASGR----- 306

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347
                  +  + G   P+ G+++MD  + D+ D L++  GD + + G        L + A
Sbjct: 307 ------AEVLVHGRRRPLAGRVSMDQVVVDVGD-LAVRTGDVVTVIGTGEDLAPTLTEWA 359

Query: 348 LASGTTNYDLLVRIGTRYAK 367
             +GT  ++LL  +G R  +
Sbjct: 360 GWAGTLPHELLTGLGRRLVR 379


>gi|188501472|gb|ACD54604.1| alanine racemase-like protein [Adineta vaga]
          Length = 379

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/380 (25%), Positives = 159/380 (41%), Gaps = 30/380 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVE 66
           ++IDL A++ N     ++ +   +   +VK +AYG+G +KI         +    V    
Sbjct: 1   MRIDLNAMRCNLEQFCSIVASTTKMMMMVKASAYGVGIKKIGKWAEKTRLIDYLAVVYTA 60

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV----PQLTFYSKLMSCGVSH 122
           EGV+LR       I V+  I     KI  + NL  VI S+      + +  K        
Sbjct: 61  EGVELRKANIHLPIMVIN-IDKEDFKICQEYNLELVIYSISLLQQLMIWLEKNTQICSFP 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDP-SSHVNSVQL 179
              ++++TG NRLGL + E   F +  F   +    +  I +H+A +DDP      + Q 
Sbjct: 120 SIHVKINTGMNRLGLDIDEIPAFLNILFEYTRCRLMVKSIYTHVAASDDPQEDQYTAEQT 179

Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ- 233
             + + +   +      +   + +S GIL  PN HF + R G  LYG  +          
Sbjct: 180 RAYLSSVHILETGLGYTVLKHMCNSMGILRHPNLHFDMVRVGGGLYGAAECFLPYMSTLL 239

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++  + +  +R       + Y  + ++ RDS I +  +GYADG    L          
Sbjct: 240 PAISMMSTVTQVRHVKKDSTIGYNRRGRVNRDSFIGIIRLGYADGLRRQLGNGH------ 293

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE----VGDYIQIFGPDIKLDDVALA 349
               G  +I    VP +G I MD  M D+TD           + ++IFG    ++++A  
Sbjct: 294 ----GHVWIHDCQVPFIGSICMDFAMIDLTDVPVDNKYELENESVEIFGSHNNIEEIARC 349

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           S T  +D +  IG R  + Y
Sbjct: 350 SDTIVFDFISTIGKRVKRVY 369


>gi|313674767|ref|YP_004052763.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312941465|gb|ADR20655.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 385

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 156/386 (40%), Gaps = 37/386 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAA-VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+++  +ALK N + +    G     + VVK NAYG G E   P    AGV  F V S  
Sbjct: 7   RIELKQSALKANINFIKKKIGKNAILSSVVKANAYGHGIESFVPMAEKAGVHHFSVASSF 66

Query: 67  EGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-YSKLMSCGVSHPY 124
           E  + L     ++ I ++  I+        + N+   + +  +L          G S   
Sbjct: 67  EAEEVLNACHEKSEIMIMGIIYEEDIPWAIENNIEFFVYNYDRLPITLEAAKKVGKSAKV 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTH-NSFNKKLGQLSLIISHLACADDPSSHVN-SVQLERF 182
            ++V+TG NR G+  +E          NK+      + +H   A+  S+      Q  ++
Sbjct: 127 HIEVETGANRTGMPAEEFPKAISFLKKNKEHVVFQGLCTHFGGAESLSNQFKIDKQKAKY 186

Query: 183 RTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---------- 227
           +  +       Y+     +A S+  L  P+  + L R G++ YG     +          
Sbjct: 187 KEFLKICRDKKYEPKIRHIACSAAALAMPDTVYDLVRVGVAQYGFWPSPDIYYHHLQETD 246

Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 ++ + + +  I+ IR    G+ + YG   + +    IAV  +GY++GYP  LS 
Sbjct: 247 KKSDGALKRIFSWKTDIMDIRDVPEGDFIGYGTAFQASHKMKIAVMPLGYSNGYPRALSN 306

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
                       G   I G   PI+G I M++ M DIT     +VGD + + G      I
Sbjct: 307 R-----------GYVLIAGKKAPIVGLINMNLFMVDITHIPQAKVGDEVVLIGRQKNNVI 355

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367
            +     ++   N ++L R+ +   +
Sbjct: 356 NVSSFTNSTQLLNNEMLSRLPSAIPR 381


>gi|297578895|ref|ZP_06940823.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536489|gb|EFH75322.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 428

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 145/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  + N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +     D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARAVRESGFKGELIRVRSASLSEMSAALDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRLSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|73763191|gb|AAZ83975.1| alanine racemase [Pseudomonas putida]
          Length = 409

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 141/350 (40%), Gaps = 29/350 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    ++I   AL++N  ++ A L G ++  AV+K +AYG G   + P++   GV    V
Sbjct: 41  NSNAWVEISAGALQHNIRTLQAELGGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAV 100

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            S EE   +R      ++  +     G+ +     ++  ++ S         +    G +
Sbjct: 101 ASNEEARVVRASGFTGQLVRVRLASLGEVEDALQYDMEELVGSAEFARQLDAIAERHGKT 160

Query: 122 HPYALQVD-TGFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + ++ +G +R G+ +             ++K  QL  +++H A             
Sbjct: 161 LRIHMALNSSGMSRNGVEMTTWSGRGEALQITDQKHLQLVALMTHFAV---EDKDDVRKG 217

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           L  F                 +    A+S   L  P  H  + R G +L+G  D +    
Sbjct: 218 LAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEAHLDMVRTGGALFG--DTVPTRT 275

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             Q V+  ++ +  +    AG  V Y     L RDS +A   +GY+DGY    +      
Sbjct: 276 EYQRVMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN----- 330

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                  G   I G+ VP++GK++M+  M D+TD   ++ G+ + +FG  
Sbjct: 331 ------KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQ 374


>gi|117619060|ref|YP_857116.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560467|gb|ABK37415.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 408

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 146/354 (41%), Gaps = 24/354 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
            +     L++DL A ++N  ++    G+   +  A++K +AYG G + + P++  AG+  
Sbjct: 37  QTASNAWLEVDLGAFEHNIQTLKDRLGDKGPKICAIMKADAYGHGIDLLVPSVVKAGIPC 96

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
             + S EE    R      R+  +    P + +      +  +I S+      + +    
Sbjct: 97  IGIASNEEARVAREKGFTGRLMRVRAATPAEVEQALPYKMEELIGSLVSAQGIADIAQRH 156

Query: 119 GVSHPYALQVDT-GFNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
             + P  + +++ G +R G+   L ++ +        K      I++H    +     + 
Sbjct: 157 HTNIPVHIALNSAGMSRNGIDLRLADSKEDALAMLKLKGITPVGIMTHFPVEEKEDVKMG 216

Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q +     +          I    A+S   L  P+ +F + RPG  LYG  D I    
Sbjct: 217 LAQFKLDSQWLLEAGKLDRSKITIHAANSFATLEVPDAYFDMVRPGGLLYG--DSIPSYT 274

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             + V+  + ++  +    AG  V Y     L RDS +A   +GY+DGY   LS      
Sbjct: 275 EYKRVMAFKTQVASVNHYPAGNTVGYDRTFTLKRDSWLANLPLGYSDGYRRALSN----- 329

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344
                      I+G  VP++GK +M+  M D+TD   ++ GD + +FG   + +
Sbjct: 330 ------KAYVLIQGQKVPVVGKTSMNTIMVDVTDLKGVKPGDEVVLFGRQGEAE 377


>gi|254286591|ref|ZP_04961547.1| alanine racemase, putative [Vibrio cholerae AM-19226]
 gi|150423349|gb|EDN15294.1| alanine racemase, putative [Vibrio cholerae AM-19226]
          Length = 428

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 146/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  + N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRVSSLHHVPKGSTVGYDSTFTSSRDSVLANLPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|146743646|gb|ABQ43054.1| alanine racemase [Borrelia burgdorferi N40]
 gi|312149466|gb|ADQ29537.1| alanine racemase [Borrelia burgdorferi N40]
          Length = 372

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/357 (22%), Positives = 150/357 (42%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 27  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILM 86

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 87  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL----- 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +   K           
Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHT 204

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++  I+    GE
Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVTFIKNVKKGE 264

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++T+ +I   L ++ G  ++I    + +++++  S  ++Y+LL  IG    + Y
Sbjct: 314 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSINEMSKFSKRSHYELLCNIGKYEKRKY 370


>gi|315181783|gb|ADT88696.1| alanine racemase [Vibrio furnissii NCTC 11218]
          Length = 409

 Score =  276 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 143/381 (37%), Gaps = 34/381 (8%)

Query: 7   LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I+LT  ++N       ++ + +  AV+K NAYG G + + P +    +    + S 
Sbjct: 45  AWLEINLTQFRDNIEQFKSKMNNHTKICAVMKANAYGNGIQGLMPTILEQQIPCVAIASN 104

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
            E   +R    +  +  +     G+ K     N+  +I S  Q    S L    G     
Sbjct: 105 AEAQAVRDSGFKGELMRVRSASLGEIKDAMHLNVEELIGSAEQAKALSALAKKAGHDIKV 164

Query: 125 ALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L + D G  R G  ++       +      K  ++  I++H        +     +L  
Sbjct: 165 HLALNDGGMGRNGIDMTTDAGKKESLQIAAAKGVRIVGIMTHFPS---YDADEVRQKLAS 221

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F T  +          + I   +A+S   L  P     + RPG  LYG     N  +P  
Sbjct: 222 FNTHSAWLIKEAKLNREDILLHVANSFTALNVPEAQLDMVRPGGVLYGDQPT-NPEYP-- 278

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y       +DSL+A   +GY+DGYP  +          
Sbjct: 279 SIVSFKTRVASLHHLPKNSTVGYDSTFTTQQDSLMANIPVGYSDGYPRKMGN-------- 330

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALA 349
                +  I G    ++G  +M+ TM D+T    ++ G  + +F    G  I   ++   
Sbjct: 331 ---KAQVLINGQRANVVGVASMNTTMVDVTHIKGVKAGSEVVLFGHSQGETISASEMENN 387

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    G+   + Y 
Sbjct: 388 ADVIFPELYTLWGSANPRVYV 408


>gi|13488309|ref|NP_085891.1| alanine racemase [Mesorhizobium loti MAFF303099]
 gi|20137422|sp|Q981H7|ALR3_RHILO RecName: Full=Alanine racemase 3
 gi|14028426|dbj|BAB54978.1| alanine racemase [Mesorhizobium loti MAFF303099]
          Length = 388

 Score =  276 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 111/364 (30%), Positives = 177/364 (48%), Gaps = 18/364 (4%)

Query: 9   LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL+A++ N+ +++AL     R AAVVK +AYGLG  K+A AL +AG    FV ++ E
Sbjct: 12  LEIDLSAIQANFQTISALVGPQVRVAAVVKSDAYGLGLVKVAGALIDAGCDLLFVGNLHE 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR     A + V         +      LIPV+++         +        Y L 
Sbjct: 72  ALLLRSSHISAAVAVFCDEFARYGEHYRSNGLIPVVNN---SVELDAICGAREPQAYFLN 128

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           V+TG +RLGL+  +          K+    S+++SHLAC++     +N +Q  RFR    
Sbjct: 129 VETGLSRLGLAFDDVRRRYLGGIFKRRP-PSVVLSHLACSERAGDAMNLLQWNRFRATSD 187

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247
             K    SLA+S+G+ LG  YHF + R G +LYG      + +P++ VV  +A+ +  R 
Sbjct: 188 LLKPTLLSLAASAGVWLGKRYHFDMVRVGSALYGLNSAGIRPNPLKPVVGVKAKTLDARN 247

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
               E V YG   +  R S +A+A IGY  G P   +   S               GY  
Sbjct: 248 VARSEAVGYGATFRTGRASRLAIAGIGYKHGLPWACANKIS-----------VRFAGYSA 296

Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
           P++G+++M+    D+TD        G  +++   D  +DD+A ++G    ++L R+G   
Sbjct: 297 PLVGRVSMEYITIDVTDVPEALCGPGTNVELLSDDFTVDDLAASAGVHPQEVLTRLGVGC 356

Query: 366 AKFY 369
           A+ Y
Sbjct: 357 ARQY 360


>gi|187931921|ref|YP_001891906.1| alanine racemase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|226711044|sp|B2SHB9|ALR_FRATM RecName: Full=Alanine racemase
 gi|187712830|gb|ACD31127.1| alanine racemase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 365

 Score =  276 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 149/372 (40%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  V  F V +  E 
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
            ++     +  + V   I+    + +   N+   I     +    ++           + 
Sbjct: 63  FRV-TAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHIN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G++  +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVNYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|262171654|ref|ZP_06039332.1| alanine racemase [Vibrio mimicus MB-451]
 gi|261892730|gb|EEY38716.1| alanine racemase [Vibrio mimicus MB-451]
          Length = 407

 Score =  276 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 147/380 (38%), Gaps = 34/380 (8%)

Query: 8   RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+I L   ++N     +  + + +  A++K +AYG G   + P +   G+    V S  
Sbjct: 44  WLEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E   +R    +  +  +     G+   + D N+  +I +  Q    ++L    G +    
Sbjct: 104 EARAVRENGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAMELAELAKKNGKTVKVH 163

Query: 126 LQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           + + D G  R G  ++ +       +   +    +  I++H     D         L  F
Sbjct: 164 MALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSIVGIMTHFPN-YDADEVRTK--LANF 220

Query: 183 RTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +   +          + I   +A+S   L  P     + RPG  LYG     N  +P  +
Sbjct: 221 KQHSAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NPEYP--S 277

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +V+ + R+  + +   G  V Y      +RDS++A   +GY+DGYP  +           
Sbjct: 278 IVSFKTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN--------- 328

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
               +  I G    ++G  +M+ TM D+TD   +  G  + +FG      I + ++   +
Sbjct: 329 --KAEVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQKNQSIAVSEMENNA 386

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
                +L    G    +FY 
Sbjct: 387 ELIFPELYTVWGNSNPRFYV 406


>gi|118497341|ref|YP_898391.1| alanine racemase [Francisella tularensis subsp. novicida U112]
 gi|195536029|ref|ZP_03079036.1| alanine racemase [Francisella tularensis subsp. novicida FTE]
 gi|226711045|sp|A0Q5X2|ALR_FRATN RecName: Full=Alanine racemase
 gi|118423247|gb|ABK89637.1| alanine racemase [Francisella novicida U112]
 gi|194372506|gb|EDX27217.1| alanine racemase [Francisella tularensis subsp. novicida FTE]
          Length = 365

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 147/372 (39%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I    L+NN   +    G+A+    VK NAYG G E I    ++  V  F V +V E 
Sbjct: 4   LEISAQTLRNNIRIIKEYVGSAKICFPVKANAYGHGLELIVEHSHDL-VDFFAVANVLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQ 127
            ++ L   +  + +   I       I   N+   I     +    K        P   + 
Sbjct: 63  FRV-LDVVEKPVMIFGVIEYNYIDRILSKNIRVSIQDYNDIEKLEKFAKYYNKKPFVHVN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 LNTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVE 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++V D +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVSDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|254369512|ref|ZP_04985523.1| hypothetical protein FTAG_01386 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122466|gb|EDO66601.1| hypothetical protein FTAG_01386 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 365

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 147/372 (39%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  V  F V +  E 
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
            ++     +  + V   I+    + +   N+   I     +    ++           + 
Sbjct: 63  FRV-TAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHIN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I     P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVTYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|229515688|ref|ZP_04405147.1| alanine racemase [Vibrio cholerae TMA 21]
 gi|229347457|gb|EEO12417.1| alanine racemase [Vibrio cholerae TMA 21]
          Length = 428

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 145/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  + N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRVSSLHHVPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|153216974|ref|ZP_01950738.1| alanine racemase, putative [Vibrio cholerae 1587]
 gi|124114006|gb|EAY32826.1| alanine racemase, putative [Vibrio cholerae 1587]
          Length = 428

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 145/381 (38%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  + N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRVSSLHHVPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|258621589|ref|ZP_05716622.1| Alanine racemase [Vibrio mimicus VM573]
 gi|258586207|gb|EEW10923.1| Alanine racemase [Vibrio mimicus VM573]
          Length = 407

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 146/377 (38%), Gaps = 28/377 (7%)

Query: 8   RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+I L   ++N     +  + + +  A++K +AYG G   + P +   G+    V S  
Sbjct: 44  WLEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E   +R    +  +  +     G+   + D N+  +I +  Q    ++L    G +    
Sbjct: 104 EARAVRESGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAMELAELAKKNGKTVKVH 163

Query: 126 LQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           + + D G  R G  ++ +       +   +    +  I++H    D           ++ 
Sbjct: 164 MALNDGGMGRNGIDMTTEAGKKEAISIATQPSLSIVGIMTHFPNYDADEVRTKLASFKQH 223

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
              +     ++       +A+S   L  P     + RPG  LYG     N  +P  ++V+
Sbjct: 224 SAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NPEYP--SIVS 280

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + R+  + +   G  V Y      +RDS++A   +GY+DGYP  +              
Sbjct: 281 FKTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 329

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            +  I G    ++G  +M+ TM D+TD   +  G  + +FG      I + ++   +   
Sbjct: 330 AEVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQKNQSIAVSEMENNAELI 389

Query: 354 NYDLLVRIGTRYAKFYT 370
             +L    G    +FY 
Sbjct: 390 FPELYTVWGNSNPRFYV 406


>gi|258627600|ref|ZP_05722377.1| Alanine racemase [Vibrio mimicus VM603]
 gi|258580182|gb|EEW05154.1| Alanine racemase [Vibrio mimicus VM603]
          Length = 407

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 146/377 (38%), Gaps = 28/377 (7%)

Query: 8   RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+I L   ++N     +  + + +  A++K +AYG G   + P +   G+    V S  
Sbjct: 44  WLEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E   +R    +  +  +     G+   + D N+  +I +  Q    ++L    G +    
Sbjct: 104 EARAVRESGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAMELAELAKKNGKTVKVH 163

Query: 126 LQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           + + D G  R G  ++ +       +   +    +  I++H    D           ++ 
Sbjct: 164 MALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSIVGIMTHFPNYDADEVRTKLASFKQH 223

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
              +     ++       +A+S   L  P     + RPG  LYG     N  +P  ++V+
Sbjct: 224 SAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NPEYP--SIVS 280

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + R+  + +   G  V Y      +RDS++A   +GY+DGYP  +              
Sbjct: 281 FKTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 329

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
            +  I G    ++G  +M+ TM D+TD   +  G  + +FG      I + ++   +   
Sbjct: 330 AEVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQKNQSIAVSEMENNAELI 389

Query: 354 NYDLLVRIGTRYAKFYT 370
             +L    G    +FY 
Sbjct: 390 FPELYTVWGNSNPRFYV 406


>gi|169656659|ref|YP_001428845.2| alanine racemase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290953541|ref|ZP_06558162.1| alanine racemase [Francisella tularensis subsp. holarctica URFT1]
 gi|295313145|ref|ZP_06803827.1| alanine racemase [Francisella tularensis subsp. holarctica URFT1]
 gi|189027647|sp|A7ND36|ALR_FRATF RecName: Full=Alanine racemase
 gi|164551727|gb|ABU61889.2| alanine racemase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 365

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 148/372 (39%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  V  F V +  E 
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
            ++     +  + V   I+    + +   N+   I     +    ++           + 
Sbjct: 63  FRV-TAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEYIEKLEQIAKELDKKVYAHIN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNNRIIR 362


>gi|114567922|ref|YP_755076.1| alanine racemase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338857|gb|ABI69705.1| Alanine racemase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 399

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 83/354 (23%), Positives = 147/354 (41%), Gaps = 25/354 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+ID+ A+K N   + +L  ++     V+K NAYG G   +A  LY  GV  F V+ + 
Sbjct: 9   WLEIDIDAVKQNLEGVKSLLDSSVHLLVVLKANAYGHGAVNMARFLYQNGVDFFAVSFLS 68

Query: 67  EGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPY 124
           E ++LR    ++ I V    +   Q K     ++   ISS+      +++          
Sbjct: 69  EALELRKAGIRSSILVFSPVVDEEQVKEAIKNHITLSISSLFDSQLLNQVSERLNQPLRV 128

Query: 125 ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+VD+G  R G + ++E      +        +  I +H+A A   +      Q  RF 
Sbjct: 129 HLKVDSGLGRFGFTNIEEISTACQSLKENSCIYIEGIYTHMADAASGNPAYTEEQFRRFM 188

Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV--V 236
            ++     + YK      A+S+  L  P+ H    R G  + G     +   P++ +   
Sbjct: 189 EIVNKLVKAGYKIPLRHCANSAVFLKYPHMHLDAVRIGTLISGQYPVGDLPRPVELIDPF 248

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             + +II ++   AG+ + Y     L  D+ IAV  +GY DG  L +          + +
Sbjct: 249 RFKCKIISLKSLKAGDYLGYSRSYCLKEDAQIAVIPVGYMDGLGLNVGNKAEGFIDLLKI 308

Query: 297 --------------GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
                           +  I+  + P+ GK+ M M M +I   L + +GD ++I
Sbjct: 309 LLKNIFFYYDLGRFKLQVKIRDSLYPVRGKVFMQMAMIEIPAGLDLSIGDEVEI 362


>gi|149910818|ref|ZP_01899452.1| alanine racemase [Moritella sp. PE36]
 gi|149806152|gb|EDM66132.1| alanine racemase [Moritella sp. PE36]
          Length = 408

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 142/384 (36%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I+L   + N       +    +  AV+K +AYG G   + P +   G+    +
Sbjct: 41  QSNSWLEINLGQFEQNIQQFKKHIKPGTKICAVMKADAYGNGIRGLMPTVIAQGIPCIAI 100

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
           TS  E   +R      ++  +      + K   + N+  +I S  Q    + L    G S
Sbjct: 101 TSNAEARLVRSSGFDGQLMRVRSASIDEIKQSLELNIEELIGSESQAEQLAALYEKTGKS 160

Query: 122 HPYALQV-DTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G+ +  A            K  ++  I++H        +     +
Sbjct: 161 IKVHIALNDGGMGRNGIDMSSAAGKQEAVAIATSKGIEVVGIMTHFPN---YDAEYIRDK 217

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           L  F+   +            I    A+S   L        + RPG   YG     N  +
Sbjct: 218 LVGFKQHSAWLMQNASLNRDDILLHAANSYTALNVKEAQLDMVRPGGVFYGDLPT-NLEY 276

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P  ++V+ + RI  I     G+ V Y     + R S++A   +GY+DGYP  +       
Sbjct: 277 P--SIVSFKTRIASIHHLPEGQTVGYDSTYTVKRASILANLPVGYSDGYPRKMGNKS--- 331

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   +  I G    ++G  +M+ TM D+TD   +  G  + +FG +    I + ++
Sbjct: 332 --------EVIINGQRAKVVGMTSMNTTMVDVTDIQGVFPGQEVTLFGAENKERITISEM 383

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
              +     +L    G+   +FY 
Sbjct: 384 EKNADLIFPELYTLWGSANPRFYV 407


>gi|89256641|ref|YP_514003.1| alanine racemase [Francisella tularensis subsp. holarctica LVS]
 gi|167011039|ref|ZP_02275970.1| alanine racemase [Francisella tularensis subsp. holarctica FSC200]
 gi|254367956|ref|ZP_04983976.1| alanine racemase [Francisella tularensis subsp. holarctica 257]
 gi|122500527|sp|Q2A2P9|ALR_FRATH RecName: Full=Alanine racemase
 gi|89144472|emb|CAJ79777.1| alanine racemase [Francisella tularensis subsp. holarctica LVS]
 gi|134253766|gb|EBA52860.1| alanine racemase [Francisella tularensis subsp. holarctica 257]
          Length = 365

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 148/372 (39%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  V  F V +  E 
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
            ++     +  + V   I+    + +   N+   I     +    ++           + 
Sbjct: 63  FRV-TAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEYIEKLEQIAKELDKKVYAHIN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A  + T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|146743640|gb|ABQ43051.1| alanine racemase [Borrelia burgdorferi ZS7]
          Length = 356

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 23/348 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 22  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 81

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 82  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 141

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 142 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 199

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++I I+    GE
Sbjct: 200 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 259

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 260 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 308

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           + M++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  
Sbjct: 309 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCN 356


>gi|167033190|ref|YP_001668421.1| alanine racemase [Pseudomonas putida GB-1]
 gi|166859678|gb|ABY98085.1| alanine racemase [Pseudomonas putida GB-1]
          Length = 409

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 143/350 (40%), Gaps = 29/350 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    +++  +AL++N  ++ A L+G ++  AV+K +AYG G   + P++   GV    V
Sbjct: 41  NSNAWVEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAV 100

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            S EE   +R      ++  +      + +     ++  ++ S         + +  G +
Sbjct: 101 ASNEEARVVRASGFTGQLVRVRLASLSELEDALQYDMEELVGSAEFARQVDAIAARHGKT 160

Query: 122 HPYALQVD-TGFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + ++ +G +R G+ +             ++K  +L  +++H A             
Sbjct: 161 LRIHMALNSSGMSRNGVEMGSWSGRGEALQITDQKHLELVALMTHFAV---EDKDDVRKG 217

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           L  F                 +    A+S   L  P     + R G +L+G  D + +  
Sbjct: 218 LAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPERT 275

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             +  +  ++ +  +    AG  V Y     LTRDS +A   +GY+DGY    +      
Sbjct: 276 EYKRAMQFKSHVAAVHSYPAGNTVGYDRTFTLTRDSRLANITVGYSDGYRRVFTN----- 330

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                  G   I G+ VP++GK++M+  M D+TD   ++ G+ + +FG  
Sbjct: 331 ------KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQ 374


>gi|291165697|gb|EFE27745.1| alanine racemase [Filifactor alocis ATCC 35896]
          Length = 383

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 150/379 (39%), Gaps = 31/379 (8%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             ID    + N   +   +  +     V+KDNAYGLG  ++A      GV  + V ++ E
Sbjct: 17  AVIDREIYRKNIRLIQHQIGKDTGLILVLKDNAYGLGATELARVGMQEGVSCYAVANLYE 76

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
            ++LR      RI VL  I+     I    ++  V+ +      Y +L  S G      +
Sbjct: 77  ALELRKLDSDIRIIVLGYINEDARTIALQYDIDVVVWTKELALSYQQLGFSSGKQARIHI 136

Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +VDTG +RLG    +E+L         +   +    SH AC +      +  QL  F T 
Sbjct: 137 KVDTGLSRLGFLPNEESLAVLEEISKMEHLTIVSTFSHFACTETDDDDFSRGQLSTFLTF 196

Query: 186 ISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYG---GTDKIN--KSHPMQTV 235
           +   K  GI+     +A S+GI+  P  H    R G    G   GTD +   + +P + +
Sbjct: 197 VDSMKKRGIQPGFIHMADSAGIVKFPESHLDFVRCGALAMGSMTGTDVVKSSEQYPTEEI 256

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           ++  +++  ++    G  + Y G      D  +    +GY DG    LS           
Sbjct: 257 ISLYSQVARVQDFPKGTSIGYDGTYFADHDIRVVTVPMGYGDGLSGELSNSM-------- 308

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
              +  I G     +G   MDM MFD T     + GD + I G D    + L D      
Sbjct: 309 ---QVIINGKKAKSVGAFCMDMAMFDATGI-DCKEGDTVTILGQDGNEKVSLHDWTKLC- 363

Query: 352 TTNYDLL-VRIGTRYAKFY 369
           T++   L   +  +  K Y
Sbjct: 364 TSSSTFLQSMLRNKIPKEY 382


>gi|260769245|ref|ZP_05878178.1| alanine racemase [Vibrio furnissii CIP 102972]
 gi|260614583|gb|EEX39769.1| alanine racemase [Vibrio furnissii CIP 102972]
          Length = 409

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 143/381 (37%), Gaps = 34/381 (8%)

Query: 7   LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I+LT  ++N       ++ + +  AV+K NAYG G + + P +    +    + S 
Sbjct: 45  AWLEINLTQFRDNIEQFKSKMNNHTKICAVMKANAYGNGIQGLMPTILEQQIPCVAIASN 104

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
            E   +R    +  +  +     G+ K     N+  +I S  Q    S L    G     
Sbjct: 105 AEAQAVRDSGFKGELMRVRSASLGEIKDAMHLNVEELIGSAEQAKALSALAKKAGHDIKV 164

Query: 125 ALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L + D G  R G  ++       +      K  ++  I++H        +     +L  
Sbjct: 165 HLALNDGGMGRNGIDMTTDAGKKESLQIAAAKGVRIVGIMTHFPS---YDADEVRQKLAS 221

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F T  +          + I   +A+S   L  P     + RPG  LYG     N  +P  
Sbjct: 222 FNTHSAWLIKEAKLNREDILLHVANSFTALNVPEAQLDMVRPGGVLYGDQPT-NPEYP-- 278

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y       +DSL+A   +GY+DGYP  +          
Sbjct: 279 SIVSFKTRVASLHHLPKNSTVGYDSTFTTQQDSLMANIPVGYSDGYPRKMGN-------- 330

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALA 349
                +  I G    ++G  +M+ TM D+T    ++ G  + +F    G  I   ++   
Sbjct: 331 ---KAQVIINGQRANVVGVASMNTTMVDVTHIKGVKAGSEVVLFGHSQGETISASEMENN 387

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    G+   + Y 
Sbjct: 388 ADVIFPELYTLWGSANPRVYV 408


>gi|115315060|ref|YP_763783.1| alanine racemase [Francisella tularensis subsp. holarctica OSU18]
 gi|122324934|sp|Q0BL88|ALR_FRATO RecName: Full=Alanine racemase
 gi|115129959|gb|ABI83146.1| alanine racemase [Francisella tularensis subsp. holarctica OSU18]
          Length = 365

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 147/372 (39%), Gaps = 26/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           LKI    L+NN   +    GNA+    VK NAYG G E I    ++  V  F V +  E 
Sbjct: 4   LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127
            ++     +  + V   I+    + +   N+   I     +    ++           + 
Sbjct: 63  FRV-TAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEYIEKLEQIAKELDKKVYAHIN 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           ++TG NR+G+   +A      ++      L  + SHLACAD+     N  Q  RF +++ 
Sbjct: 122 INTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVK 181

Query: 188 HYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240
             KG    I   L++S G L      + + RPGI  YG   +         ++ +    +
Sbjct: 182 FTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLS 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           +++ I     GE V Y    +      +AV  IGY DG+P  L              G  
Sbjct: 242 KVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFV 290

Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355
            I   M P+ G+++MD     +  +   ++VGD +++             +A    T  Y
Sbjct: 291 NINDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQINTIEY 350

Query: 356 DLLVRIGTRYAK 367
           D++  +  R  +
Sbjct: 351 DIMSTLNDRIIR 362


>gi|312882516|ref|ZP_07742257.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369916|gb|EFP97427.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 407

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 141/378 (37%), Gaps = 30/378 (7%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+++L+  + N       L+   R  AV+K +AYG G   + P +    +    + S  
Sbjct: 44  WLEVNLSQFRANIEQFETHLAQGTRICAVMKADAYGNGIYGLMPIIIEKKIPCIAIASNS 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           E   +R    +  +  +   +  + K     N+  ++ +V Q+  + +L           
Sbjct: 104 EAKAVREAGFKGELIRVRSANLKEVKEGLGLNIEELVGTVDQIKEFEELSREQATPIKIH 163

Query: 126 LQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS------SHVNS 176
           L + D G  R G  ++  E              ++  I++H    D         S   +
Sbjct: 164 LALNDGGMGRNGLDMTTDEGQAHAVRIIESPNIEIVGIMTHFPNYDADEVKQKLASFKTN 223

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
            Q   F       K +   +A+S   +  P     + RPG  LYG     N  +P  ++V
Sbjct: 224 TQW-IFDNTTLERKDVILHVANSYASVNVPESQLDMVRPGGVLYGDLPT-NPEYP--SIV 279

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           + + RI  +    A   V Y       + S++A   +GY+DGYP  +             
Sbjct: 280 SFKTRIASLHNLPANSTVGYDSTYTTEKKSVLANLPVGYSDGYPRKMGNR---------- 329

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352
             +  + G    ++G  +M+ TM D+++   +  G  + +FG      I + ++   +  
Sbjct: 330 -AQVLVNGQRAKVVGVTSMNTTMVDVSNVKGVLPGQEVTLFGQQKQEAISIGEMEEHADV 388

Query: 353 TNYDLLVRIGTRYAKFYT 370
              +L    G    ++Y 
Sbjct: 389 IFPELYTVWGNANPRYYV 406


>gi|187918034|ref|YP_001883597.1| alanine racemase [Borrelia hermsii DAH]
 gi|119860882|gb|AAX16677.1| alanine racemase [Borrelia hermsii DAH]
          Length = 366

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 154/371 (41%), Gaps = 23/371 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+L  L +N  S+          A +K +AYG G  +    L   GV  F +  +++ 
Sbjct: 7   IIINLQNLNHNLTSIKNHIQKRELVATLKSDAYGHGLIQTFKFLKEKGVNYFGLFWIDDA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
           +KL+       I +         K +   N+ P ++    L+   +            L+
Sbjct: 67  LKLKKIDKNVNILLYINTDKNAIKNLVKFNITPFVADSQYLSLIEQECRKQNKKIKAHLK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VD G NR G+ +++AL+      N K  +   I +HL   +  ++ +   Q+E+F   I+
Sbjct: 127 VDVGMNRYGIKIEDALNLAIQIQNSKSIEFEGICTHLPTTE--NTKITQTQIEKFVYFIN 184

Query: 188 HYKGIE-----ASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPM---QTVVTA 238
             K           ++S  I        F + RPG+ LYG     N S+     + V+  
Sbjct: 185 KLKSKNINPKFIHASNSEHIANYKISEKFNMVRPGLILYGYHPNPNISNNNLQLKPVLNL 244

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ++II ++    GE +SY G      D  I +  +GY DG P   S              
Sbjct: 245 YSKIIFLKNIKKGEQISYSGLFTAKEDMQIGLIPVGYFDGIPQNTSN-----------NF 293

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              I+     I GKI M++++ +I   L I +G+ ++I    + LD ++  SG + Y++L
Sbjct: 294 YCIIRDRKCFIKGKICMNISIIEIPKDLKINIGEKVEIISERLSLDILSKESGISKYEIL 353

Query: 359 VRIGTRYAKFY 369
             IG    K Y
Sbjct: 354 CSIGKHEKKKY 364


>gi|261322850|ref|ZP_05962047.1| alanine racemase [Brucella neotomae 5K33]
 gi|261298830|gb|EEY02327.1| alanine racemase [Brucella neotomae 5K33]
          Length = 314

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 102/281 (36%), Positives = 145/281 (51%), Gaps = 15/281 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ------------- 233
           +    + A+LA+S G  LG  Y+F L RPGI+LYG   +       +             
Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
            V+T  AR+I +R    G  V YGG         IA  A+G
Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVG 301


>gi|332669025|ref|YP_004452033.1| alanine racemase [Cellulomonas fimi ATCC 484]
 gi|332338063|gb|AEE44646.1| alanine racemase [Cellulomonas fimi ATCC 484]
          Length = 382

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/372 (21%), Positives = 139/372 (37%), Gaps = 30/372 (8%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL +D  A+  N   +   +      AVVK + +G G   +A      G     VT+V E
Sbjct: 18  RLLVDPAAVAANTRLLAGRARG-DLMAVVKADGFGHGAVTVARTALAHGATSLGVTTVAE 76

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + LR    +A +                  +   +   P       ++         L 
Sbjct: 77  ALALRDAGLRAPVLSWLNPVDADFASAVAAGVELAV---PDAAHLRAVLDTAPGARVHLH 133

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +DTG  R G            + + +     ++  ++ HLACAD P    N+    RF  
Sbjct: 134 LDTGLARDGAEPAAWPSLCRLARSAERTGRVRVVGVMGHLACADRPRHPANAEGRSRFAW 193

Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            +     +  +     LA+++  L  P  H    R G  L G              ++  
Sbjct: 194 GVRTARAAGLRPSVRHLAATAATLTDPRSHHTTVRVGAGLVGIDPSGTTRLAW--AMSLT 251

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A ++ +R+  AG  V YG      R + +A+  +GYADG P  + G             +
Sbjct: 252 APVVSVRRVRAGTPVGYGHTWTAPRATTLALLPVGYADGLPRAVPGR-----------AE 300

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
             ++G   P++G+++MD T+ D+ D   +  G+   + GP    +   +D A       +
Sbjct: 301 VLLRGRRRPVVGRVSMDQTVVDVGDEP-VRPGEVAVLLGPGTGGEPTPEDWADWFDVLPH 359

Query: 356 DLLVRIGTRYAK 367
           ++L   G R A+
Sbjct: 360 EVLTGFGPRVAR 371


>gi|262402336|ref|ZP_06078897.1| alanine racemase [Vibrio sp. RC586]
 gi|262351118|gb|EEZ00251.1| alanine racemase [Vibrio sp. RC586]
          Length = 407

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 146/384 (38%), Gaps = 34/384 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  + + +  A++K +AYG G   + P +   G+    V
Sbjct: 40  QSNSWLEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGILCVGV 99

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 100 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQAMELAELAKKNGKT 159

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +          
Sbjct: 160 VKVHMALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLNIVGIMTHFPNYNADEVRAK--- 216

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           L +F+   +          + I   +A+S   L  P     + RPG  LYG     N  +
Sbjct: 217 LAKFKESSAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NPEY 275

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P  ++V+ + R+  +     G  V Y       RDS++A   +GY+DGYP  +       
Sbjct: 276 P--SIVSFKTRVASLHHVPKGTTVGYDSTFTTNRDSVLANLPVGYSDGYPRKMGN----- 328

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   +  I G    ++G  +M+ TM D+TD   +  G  + +FG      I + ++
Sbjct: 329 ------KAEVLINGQRAKVIGVTSMNTTMVDVTDIKGVLPGQEVALFGQQQKQSIAVSEM 382

Query: 347 ALASGTTNYDLLVRIGTRYAKFYT 370
              +     +L    GT   +FY 
Sbjct: 383 ENNAELIFPELYTLWGTSNPRFYV 406


>gi|20137517|sp|Q9KSE5|ALR2_VIBCH RecName: Full=Alanine racemase 2
          Length = 392

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 144/381 (37%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  + N +  A++K +AYG G   + P +   G+    V
Sbjct: 25  QSNSWLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 84

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +     D N+  +I +  Q    ++L    G +
Sbjct: 85  ASNAEARAVRESGFKGELIRVRSASLSEMSSALDLNIEELIGTHQQALDLAELAKQSGKT 144

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 145 LKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 204

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 205 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 261

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 262 SIVSFKTRVSSLHHLPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 313

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 314 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 370

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 371 AELIFPELYTLWGTSNPRFYV 391


>gi|121586566|ref|ZP_01676352.1| alanine racemase, putative [Vibrio cholerae 2740-80]
 gi|121726850|ref|ZP_01680062.1| alanine racemase, putative [Vibrio cholerae V52]
 gi|147673980|ref|YP_001216876.1| alanine racemase [Vibrio cholerae O395]
 gi|153819283|ref|ZP_01971950.1| alanine racemase, putative [Vibrio cholerae NCTC 8457]
 gi|153822911|ref|ZP_01975578.1| alanine racemase, putative [Vibrio cholerae B33]
 gi|227081483|ref|YP_002810034.1| alanine racemase, putative [Vibrio cholerae M66-2]
 gi|229505102|ref|ZP_04394612.1| alanine racemase [Vibrio cholerae BX 330286]
 gi|229511228|ref|ZP_04400707.1| alanine racemase [Vibrio cholerae B33]
 gi|229518346|ref|ZP_04407790.1| alanine racemase [Vibrio cholerae RC9]
 gi|229608106|ref|YP_002878754.1| alanine racemase [Vibrio cholerae MJ-1236]
 gi|254848434|ref|ZP_05237784.1| alanine racemase [Vibrio cholerae MO10]
 gi|298498598|ref|ZP_07008405.1| alanine racemase [Vibrio cholerae MAK 757]
 gi|9655801|gb|AAF94470.1| alanine racemase, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549245|gb|EAX59277.1| alanine racemase, putative [Vibrio cholerae 2740-80]
 gi|121630754|gb|EAX63139.1| alanine racemase, putative [Vibrio cholerae V52]
 gi|126510186|gb|EAZ72780.1| alanine racemase, putative [Vibrio cholerae NCTC 8457]
 gi|126519563|gb|EAZ76786.1| alanine racemase, putative [Vibrio cholerae B33]
 gi|146315863|gb|ABQ20402.1| putative alanine racemase [Vibrio cholerae O395]
 gi|227009371|gb|ACP05583.1| alanine racemase, putative [Vibrio cholerae M66-2]
 gi|227013229|gb|ACP09439.1| alanine racemase, putative [Vibrio cholerae O395]
 gi|229345061|gb|EEO10035.1| alanine racemase [Vibrio cholerae RC9]
 gi|229351193|gb|EEO16134.1| alanine racemase [Vibrio cholerae B33]
 gi|229357325|gb|EEO22242.1| alanine racemase [Vibrio cholerae BX 330286]
 gi|229370761|gb|ACQ61184.1| alanine racemase [Vibrio cholerae MJ-1236]
 gi|254844139|gb|EET22553.1| alanine racemase [Vibrio cholerae MO10]
 gi|297542931|gb|EFH78981.1| alanine racemase [Vibrio cholerae MAK 757]
          Length = 428

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 144/381 (37%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  + N +  A++K +AYG G   + P +   G+    V
Sbjct: 61  QSNSWLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 120

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +     D N+  +I +  Q    ++L    G +
Sbjct: 121 ASNAEARAVRESGFKGELIRVRSASLSEMSSALDLNIEELIGTHQQALDLAELAKQSGKT 180

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 181 LKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 240

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 241 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 297

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 298 SIVSFKTRVSSLHHLPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 349

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 350 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 406

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 407 AELIFPELYTLWGTSNPRFYV 427


>gi|161582006|ref|NP_230956.2| alanine racemase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|255745708|ref|ZP_05419656.1| alanine racemase [Vibrio cholera CIRS 101]
 gi|262159017|ref|ZP_06030129.1| alanine racemase [Vibrio cholerae INDRE 91/1]
 gi|262169374|ref|ZP_06037066.1| alanine racemase [Vibrio cholerae RC27]
 gi|255736783|gb|EET92180.1| alanine racemase [Vibrio cholera CIRS 101]
 gi|262022187|gb|EEY40896.1| alanine racemase [Vibrio cholerae RC27]
 gi|262029202|gb|EEY47854.1| alanine racemase [Vibrio cholerae INDRE 91/1]
          Length = 407

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 144/381 (37%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  + N +  A++K +AYG G   + P +   G+    V
Sbjct: 40  QSNSWLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 99

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +     D N+  +I +  Q    ++L    G +
Sbjct: 100 ASNAEARAVRESGFKGELIRVRSASLSEMSSALDLNIEELIGTHQQALDLAELAKQSGKT 159

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 160 LKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 219

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 220 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 276

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 277 SIVSFKTRVSSLHHLPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 328

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 329 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENN 385

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   +FY 
Sbjct: 386 AELIFPELYTLWGTSNPRFYV 406


>gi|223939404|ref|ZP_03631282.1| alanine racemase [bacterium Ellin514]
 gi|223891896|gb|EEF58379.1| alanine racemase [bacterium Ellin514]
          Length = 400

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 150/374 (40%), Gaps = 27/374 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    L+I   A ++N   M  L   N +  AV+K +AYG G   + PA+  A +    V
Sbjct: 32  NAHAWLEISQPAFEHNLAEMKKLVGPNTQVCAVMKADAYGHGIAMLIPAISRAAIPYVGV 91

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
           TS EE  K R    + ++  L    P + +     ++  ++ S+      S L     + 
Sbjct: 92  TSNEEAAKARAAGYKGKLMRLRTATPAEIEAALPYDIEELLGSLTLAEDVSVLAHRHHII 151

Query: 122 HPYALQVDT-GFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
             Y L +++ G +R G+ L+                 ++  I++H    +          
Sbjct: 152 LRYHLALNSAGMSRNGIELKADAGKADALALLRLPNLRIVGIMTHFPVEEVADVRAGLAA 211

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
                  + H   ++        A+S   L  P     L RPG +LYG  D +      Q
Sbjct: 212 FNTESAWVIHEGHLDRSKLLLHTANSFATLEVPEARLDLVRPGGALYG--DTVPSHTEYQ 269

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++ ++R+  I     G  + Y     LTRDS +A   +GY+DGY    S         
Sbjct: 270 RVLSFKSRVAAINAYPKGNTICYDRTFTLTRDSRLANIPVGYSDGYRRVFSN-------- 321

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                   I G+  PI+G++TM+  M D+TD   ++ GD + +FG     +I   ++   
Sbjct: 322 ---KANVLIHGHRCPIVGRVTMNTVMVDVTDLADVQKGDEVVLFGKQGAAEITQTELEDI 378

Query: 350 SGTTNYDLLVRIGT 363
           SGT   +L    G 
Sbjct: 379 SGTILVELYAVWGR 392


>gi|262395354|ref|YP_003287207.1| alanine racemase [Vibrio sp. Ex25]
 gi|262338948|gb|ACY52742.1| alanine racemase [Vibrio sp. Ex25]
          Length = 409

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 144/385 (37%), Gaps = 42/385 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I+L   ++N     +   G  +  AV+K +AYG G   + P +    +    V S 
Sbjct: 45  AWLEINLGQFRDNIEQFKSHMDGKTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAVASN 104

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPY 124
            E   +R    + ++  +     G+ +   D N+  +I +  Q    SKL          
Sbjct: 105 AEAQTVRDSGFKGQLMRVRSADIGEIEAAIDLNIEELIGTAEQAKALSKLAEKADKEIKV 164

Query: 125 ALQV-DTGFNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            L + D G  R G+ +      +EAL+            +  I++H       ++     
Sbjct: 165 HLALNDGGMGRNGVDMTTKAGKKEALEIAQQ----DGVNIVGIMTHFPN---YNADEVRQ 217

Query: 178 QLERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           +L  F+   +          + I   +A+S   L        + RPG  LYG     N  
Sbjct: 218 KLSSFKDSSAWLIKEAGLKREDILLHVANSYTALNVSEAQLDMVRPGGVLYGDLPT-NPE 276

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           +P  ++V+ + R+  +        V Y    K +++SL+A   +GY+DGYP  +      
Sbjct: 277 YP--SIVSFKTRVASVHHLPKNSTVGYDSSYKTSKESLMANIPVGYSDGYPRKMGNT--- 331

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345
                    +  I G    + G  +M+ TM DIT    +E G  + +FG      I   +
Sbjct: 332 --------AEVLINGQRAKVAGVASMNTTMVDITGIKDVEPGSEVVLFGSQQGKTISAAE 383

Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370
           +   +     +L    G    + Y 
Sbjct: 384 MEKHAEVIFPELYTVWGAANPRVYV 408


>gi|330829095|ref|YP_004392047.1| alanine racemase [Aeromonas veronii B565]
 gi|328804231|gb|AEB49430.1| Alanine racemase [Aeromonas veronii B565]
          Length = 408

 Score =  273 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 144/354 (40%), Gaps = 24/354 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
            +     L++DL A ++N  ++    G+   +  A++K +AYG G + + P++  A +  
Sbjct: 37  QTASNAWLEVDLGAFEHNIQTLKDRLGDKGPQICAIMKADAYGHGIDLLVPSVVKANIPC 96

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118
             + S EE    R      R+  +    P + +      +  +I S+      + +    
Sbjct: 97  IGIASNEEARVAREKGFTGRLMRVRAATPDEVEQALPYKMEELIGSLVSAQGIADIAQRH 156

Query: 119 GVSHPYALQVDT-GFNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
             + P  + +++ G +R G+   L +A          K      I++H    +     + 
Sbjct: 157 HTTIPVHIALNSAGMSRNGIDLRLADAKQDALAMLKLKGITPVGIMTHFPVEEKEDVKMG 216

Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q +     +          I    A+S   L  P+ +F + RPG  LYG  D I    
Sbjct: 217 LAQFKLDSQWLLEAGKLDRSKITIHAANSFATLAVPDAYFDMVRPGGLLYG--DSIPSHT 274

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             + V+  + ++  +    AG  V Y     L RDS +A   +GY+DGY  +LS      
Sbjct: 275 EYKRVMAFKTQVASVNHYAAGNTVGYDRTFTLKRDSWLANLPLGYSDGYRRSLSN----- 329

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344
                      I+G  VP++GK +M+  M D+TD   ++ GD + +FG     +
Sbjct: 330 ------KAYVLIQGQKVPVVGKTSMNTIMVDVTDLKGVKPGDEVVLFGRQGDAE 377


>gi|153836908|ref|ZP_01989575.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
 gi|149749866|gb|EDM60611.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
          Length = 409

 Score =  273 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 140/381 (36%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    L+IDL   K N     +  S   +  AV+K +AYG G   + P +    +    +
Sbjct: 42  SSNTWLEIDLGQFKQNIEQFKSHMSDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAI 101

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
            S  E   +R    + ++  +     G+ +   D N+  +I ++ Q    + L      +
Sbjct: 102 ASNAEAQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKANKT 161

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SH 173
               L + D G  R G  ++ +           +   ++  I++H    +          
Sbjct: 162 VKVHLALNDGGMGRNGIDMTTENGKKEALAIAKQSGVEIVGIMTHFPNYNAEEVRAKLGS 221

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
                    +      + I   +A+S   L  P     + RPG  LYG     N  +P  
Sbjct: 222 FKESSAWLIKEANLKREDILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NLEYP-- 278

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y      T++S++A   +GY+DGYP  +          
Sbjct: 279 SIVSFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNT------- 331

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I G    ++G  +M+ TM D++D   ++ G  + +FG      I   ++   
Sbjct: 332 ----ADVLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFGNQKSQTINAAEIEKN 387

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   + Y 
Sbjct: 388 ADVIFPELYTIWGTSNPRVYV 408


>gi|260901465|ref|ZP_05909860.1| alanine racemase [Vibrio parahaemolyticus AQ4037]
 gi|308107691|gb|EFO45231.1| alanine racemase [Vibrio parahaemolyticus AQ4037]
          Length = 409

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 140/381 (36%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    L+IDL   K N     +   +  +  AV+K +AYG G   + P +    +    +
Sbjct: 42  SSNTWLEIDLGQFKQNIEQFKSHMNDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAI 101

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
            S  E   +R    + ++  +     G+ +   D N+  +I ++ Q    + L      +
Sbjct: 102 ASNAEAQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKTNKT 161

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SH 173
               L + D G  R G  ++ +           +   ++  I++H    +          
Sbjct: 162 VKVHLALNDGGMGRNGIDMTTENGKKEALAIAKQSGVEIVGIMTHFPNYNAEEVRAKLGS 221

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
                    +      + I   +A+S   L  P     + RPG  LYG     N  +P  
Sbjct: 222 FKESSAWLIKEADLKRENILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NLEYP-- 278

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y      T++S++A   +GY+DGYP  +          
Sbjct: 279 SIVSFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNT------- 331

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I G    ++G  +M+ TM D++D   ++ G  + +FG      I   ++   
Sbjct: 332 ----ADVLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFGNQKSQTINAAEIEKN 387

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   + Y 
Sbjct: 388 ADVIFPELYTIWGTSNPRVYV 408


>gi|262165566|ref|ZP_06033303.1| alanine racemase [Vibrio mimicus VM223]
 gi|262025282|gb|EEY43950.1| alanine racemase [Vibrio mimicus VM223]
          Length = 363

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 146/376 (38%), Gaps = 28/376 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++I L   ++N     +  + + +  A++K +AYG G   + P +   G+    V S  E
Sbjct: 1   MEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNAE 60

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
              +R    +  +  +     G+   + D N+  +I +  Q    ++L    G +    +
Sbjct: 61  ARAVRESGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAMELAELAKKNGKTVKVHM 120

Query: 127 QV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            + D G  R G  ++ +       +   +    +  I++H    D           ++  
Sbjct: 121 ALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLNIVGIMTHFPNYDADEVRTKLASFKQHS 180

Query: 184 TLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
             +     ++       +A+S   L  P     + RPG  LYG     N  +P  ++V+ 
Sbjct: 181 AWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NPEYP--SIVSF 237

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           + R+  + +   G  V Y      +RDS++A   +GY+DGYP  +               
Sbjct: 238 KTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------KA 286

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +  I G    ++G  +M+ TM D+TD   +  G  + +FG      I + ++   +    
Sbjct: 287 EVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQKNQSIAVSEMENNAELIF 346

Query: 355 YDLLVRIGTRYAKFYT 370
            +L    G    +FY 
Sbjct: 347 PELYTVWGNSNPRFYV 362


>gi|313498322|gb|ADR59688.1| Alr [Pseudomonas putida BIRD-1]
          Length = 380

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 141/350 (40%), Gaps = 29/350 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    +++  +AL++N  ++ A L+G ++  AV+K +AYG G   + P++   GV    V
Sbjct: 12  NSNAWVEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAV 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            S EE   +R      ++  +      + +     ++  ++ S         + +  G +
Sbjct: 72  ASNEEARVVRASGFTGQLVRVRLASLSELEDGLQYDMEELVGSAEFARQADAIAARHGKT 131

Query: 122 HPYALQVD-TGFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + ++ +G +R G+ +             ++K  +L  +++H A             
Sbjct: 132 LRIHMALNSSGMSRNGVEMATWSGRGEALQITDQKHLKLVALMTHFAV---EDKDDVRKG 188

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           L  F                 +    A+S   L  P     + R G +L+G  D +    
Sbjct: 189 LAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPGRT 246

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             +  +  ++ +  +    AG  V Y     L RDS +A   +GY+DGY    +      
Sbjct: 247 EYKRAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN----- 301

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                  G   I G+ VP++GK++M+  M D+TD   ++ G+ + +FG  
Sbjct: 302 ------KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQ 345


>gi|26990430|ref|NP_745855.1| alanine racemase [Pseudomonas putida KT2440]
 gi|24985399|gb|AAN69319.1|AE016569_3 alanine racemase, putative [Pseudomonas putida KT2440]
          Length = 409

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 141/350 (40%), Gaps = 29/350 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    +++  +AL++N  ++ A L+G ++  AV+K +AYG G   + P++   GV    V
Sbjct: 41  NSNAWVEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAV 100

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            S EE   +R      ++  +      + +     ++  ++ S         + +  G +
Sbjct: 101 ASNEEARVVRASGFTGQLVRVRLASLSELEDGLQYDMEELVGSAEFARQADAIAARHGKT 160

Query: 122 HPYALQVD-TGFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + ++ +G +R G+ +             ++K  +L  +++H A             
Sbjct: 161 LRIHMALNSSGMSRNGVEMATWSGRGEALQITDQKHLKLVALMTHFAV---EDKDDVRKG 217

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           L  F                 +    A+S   L  P     + R G +L+G  D +    
Sbjct: 218 LAAFNEQTDWLIKHARLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPART 275

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             +  +  ++ +  +    AG  V Y     L RDS +A   +GY+DGY    +      
Sbjct: 276 EYKRAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN----- 330

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                  G   I G+ VP++GK++M+  M D+TD   ++ G+ + +FG  
Sbjct: 331 ------KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQ 374


>gi|146743648|gb|ABQ43055.1| alanine racemase [Borrelia burgdorferi]
          Length = 357

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 148/350 (42%), Gaps = 23/350 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 21  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILM 80

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P ++    L    K  +         L++D G NR G+ + +
Sbjct: 81  YIKVDKKEIKNLIKFELVPFVADFEYLFSIEKECTLQKNKIKVHLKIDIGMNRYGIKIDD 140

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  + SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 141 ALEIATYIQNSKFLELEGVCSHLPSTENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 198

Query: 197 ASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+       F + RPG+ LYG         P    + V++  +++I I+    GE
Sbjct: 199 SNSGHIINYKLSPQFNMVRPGLILYGYCQSQKNKKPALNFKPVLSLFSKVIFIKNVKKGE 258

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 259 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 307

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
           + M++ + +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG
Sbjct: 308 VCMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 357


>gi|328470761|gb|EGF41672.1| alanine racemase [Vibrio parahaemolyticus 10329]
          Length = 409

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 141/381 (37%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    L++DL   K N     +  S   +  AV+K +AYG G   + P +    +    +
Sbjct: 42  SSNTWLEVDLGQFKQNIEQFKSHMSDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAI 101

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
            S  E   +R    + ++  +     G+ +   D N+  +I ++ Q    + L      +
Sbjct: 102 ASNAEAQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKANKT 161

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L + D G  R G  ++ +           +   ++  I++H    +          
Sbjct: 162 VKVHLALNDGGMGRNGIDMTTENGKKEALAIAKQSGVEIVGIMTHFPNYNAEEVRAKLGS 221

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +     +     ++       +A+S   L  P     + RPG  LYG     N  +P  
Sbjct: 222 FKESSAWLIEKANLKREDILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NLEYP-- 278

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y      T++S++A   +GY+DGYP  +          
Sbjct: 279 SIVSFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNT------- 331

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I G    ++G  +M+ TM D++D   ++ G  + +FG      I   ++   
Sbjct: 332 ----ADVLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFGNQKSQTINAAEIEKN 387

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   + Y 
Sbjct: 388 ADVIFPELYTIWGTSNPRVYV 408


>gi|148547263|ref|YP_001267365.1| alanine racemase [Pseudomonas putida F1]
 gi|148511321|gb|ABQ78181.1| alanine racemase [Pseudomonas putida F1]
          Length = 409

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 141/350 (40%), Gaps = 29/350 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           N    +++  +AL++N  ++ A L+G ++  AV+K +AYG G   + P++   GV    V
Sbjct: 41  NSNAWVEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAV 100

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
            S EE   +R      ++  +      + +     ++  ++ S         + +  G +
Sbjct: 101 ASNEEARVVRASGFTGQLVRVRLASLSELEDGLQYDMEELVGSAEFARQADAIAARHGKT 160

Query: 122 HPYALQVD-TGFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + ++ +G +R G+ +             ++K  +L  +++H A             
Sbjct: 161 LRIHMALNSSGMSRNGVEMATWSGRGEALQITDQKHLKLVALMTHFAV---EDKDDVRKG 217

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           L  F                 +    A+S   L  P     + R G +L+G  D +    
Sbjct: 218 LAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPART 275

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             +  +  ++ +  +    AG  V Y     L RDS +A   +GY+DGY    +      
Sbjct: 276 EYKRAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN----- 330

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                  G   I G+ VP++GK++M+  M D+TD   ++ G+ + +FG  
Sbjct: 331 ------KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQ 374


>gi|28900856|ref|NP_800511.1| alanine racemase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362532|ref|ZP_05775452.1| alanine racemase [Vibrio parahaemolyticus K5030]
 gi|260879223|ref|ZP_05891578.1| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|260896758|ref|ZP_05905254.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|34098472|sp|Q87HG4|ALR2_VIBPA RecName: Full=Alanine racemase 2
 gi|28809302|dbj|BAC62344.1| putative alanine racemase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087318|gb|EFO37013.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|308094088|gb|EFO43783.1| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|308115278|gb|EFO52818.1| alanine racemase [Vibrio parahaemolyticus K5030]
          Length = 409

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 140/381 (36%), Gaps = 28/381 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    L+IDL   K N     +   +  +  AV+K +AYG G   + P +    +    +
Sbjct: 42  SSNTWLEIDLGQFKQNIEQFKSHMNDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAI 101

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
            S  E   +R    + ++  +     G+ +   D N+  +I ++ Q    + L      +
Sbjct: 102 ASNAEAQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKANKT 161

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SH 173
               L + D G  R G  ++ +           +   ++  I++H    +          
Sbjct: 162 VKVHLALNDGGMGRNGIDMTTENGKKEALAIAKQSGVEIVGIMTHFPNYNAEEVRAKLGS 221

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
                    +      + I   +A+S   L  P     + RPG  LYG     N  +P  
Sbjct: 222 FKESSAWLIKEANLKREDILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NLEYP-- 278

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +        V Y      T++S++A   +GY+DGYP  +          
Sbjct: 279 SIVSFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNT------- 331

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I G    ++G  +M+ TM D++D   ++ G  + +FG      I   ++   
Sbjct: 332 ----ADVLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFGNQKSQTINAAEIEKN 387

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +     +L    GT   + Y 
Sbjct: 388 ADVIFPELYTIWGTSNPRVYV 408


>gi|178847612|pdb|3CO8|A Chain A, Crystal Structure Of Alanine Racemase From Oenococcus Oeni
 gi|178847613|pdb|3CO8|B Chain B, Crystal Structure Of Alanine Racemase From Oenococcus Oeni
          Length = 380

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 140/378 (37%), Gaps = 30/378 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   R++   ++L  N      +SG       VK NAYG G  +++      GV    V+
Sbjct: 7   HRSTRIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVS 66

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            ++EG+ +R       I +L  I      I    + +  +SS+  L    K++       
Sbjct: 67  VLDEGIAIRQAGIDDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADKIL-GKEKLS 125

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLER 181
             L VDTG NR+G+  ++ L        +     S   I +H A +D+P  H    Q  R
Sbjct: 126 VNLAVDTGXNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNR 185

Query: 182 FRTLISHYKGIEA-SLASSSGILLG----PNYHFQLTRPGISLYGGTDKINKSHPM---Q 233
           +  LI          + +S          P  +  + R G  +YG         P+   +
Sbjct: 186 WYELIDGLIXPRYVHVXNSGAAXYHSKELPGCN-SIARVGTVVYGVEPSEGVLGPIDKLK 244

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V   ++ +  ++K  AGE +SYG +   +RD+ I    IGY DG+              
Sbjct: 245 PVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDFQL----- 299

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                   I G     +G+I  D     +       +G  + + G     +  L D+   
Sbjct: 300 -------LIDGQKCRQVGQIAXDQXXVALPHEYP--IGTEVTLIGKSGKYENTLYDLHKH 350

Query: 350 SGTTNYDLLVRIGTRYAK 367
           SG   + + V    R  +
Sbjct: 351 SGVPPWKITVAFSDRLKR 368


>gi|27366912|ref|NP_762439.1| alanine racemase [Vibrio vulnificus CMCP6]
 gi|34098524|sp|Q8D6Q0|ALR2_VIBVU RecName: Full=Alanine racemase 2
 gi|27358479|gb|AAO07429.1| alanine racemase [Vibrio vulnificus CMCP6]
          Length = 408

 Score =  271 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 138/378 (36%), Gaps = 28/378 (7%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I L   K+N     + ++   +  AV+K +AYG G   + P +    +    + S 
Sbjct: 44  AWLEISLGQFKSNIEQFKSHIAPQTKICAVMKADAYGNGIRGLMPTILEQQIPCVAIASN 103

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
            E   +R    +  +  +      + +     ++  +I S  Q    + L      +   
Sbjct: 104 AEAKLVRESGFEGELIRVRSASTSEIEQALSLDIEELIGSEQQARELASLAEKYSKTIKV 163

Query: 125 ALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L + D G  R G  +S +                +  I++H    +            +
Sbjct: 164 HLALNDGGMGRNGIDMSTERGPKEAVAIATHPSVAVVGIMTHFPNYNAEDVRTKLKSFNQ 223

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
               +    G++       +A+S   L  P     + RPG  LYG     N  +P  ++V
Sbjct: 224 HAQWLMESAGLKREEITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NPEYP--SIV 280

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             + R+  +    AG  V Y        D+++A   +GY+DGYP  +             
Sbjct: 281 AFKTRVASLHSLPAGSTVGYDSTFTTANDAVMANLTVGYSDGYPRKMGN----------- 329

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
             +  I G    ++G  +M+ TM D+++   +  GD + +FG      I + ++   +  
Sbjct: 330 KAQVLINGQRANVVGVASMNTTMVDVSNIKGVLPGDEVTLFGAQKNQHISVGEMEENAEV 389

Query: 353 TNYDLLVRIGTRYAKFYT 370
              +L    GT   +FY 
Sbjct: 390 IFPELYTIWGTSNPRFYV 407


>gi|310817895|ref|YP_003950253.1| alanine racemase [Stigmatella aurantiaca DW4/3-1]
 gi|309390967|gb|ADO68426.1| Alanine racemase [Stigmatella aurantiaca DW4/3-1]
          Length = 414

 Score =  271 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 164/395 (41%), Gaps = 46/395 (11%)

Query: 8   RLKIDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            L++   +L++N     AL    +      AV+K NAYG G E++ P L +  V   +  
Sbjct: 29  WLELSAASLRHNVEVFRALEATGAPARALGAVLKGNAYGHGLEQVLP-LVHPLVDILYFI 87

Query: 64  SVEEGVKLRLYTPQ---AR--IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           + ++ + +R +  +   A   + V+  I P +   +    +  V++         +L + 
Sbjct: 88  TPQDALAVRAFERERKLAPRQVLVIGAISPEEAVALAREGVDAVVADSAWAEAGPRLRAA 147

Query: 119 GVSHP--YALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADD-PSSHV 174
            + HP    + +DTG  R G +L++    T      + + +++ ++SH A  +D      
Sbjct: 148 RLQHPLRVHVHIDTGLGREGFTLEQLPRDTGFLTEYRDVFEVTGVLSHFANTEDVTEQAY 207

Query: 175 NSVQLERFRTLISHY-------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
              QLE F    +           ++  +A+S+  L  P   ++  R GISLYG      
Sbjct: 208 ALAQLEAFEAGTARLVEQLSLKGPLQRHIAASAASLSLPRARYEALRVGISLYGFWPSPE 267

Query: 228 KS----------HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
                         ++ V++   R  +++    G  V YG   +    + IAV  +GY D
Sbjct: 268 TRLSTRLVLGGLPTLKPVLSWRCRSQVVKWLPEGSYVGYGCTYRCPEPTRIAVLPVGYFD 327

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           GYP   SG                + G   P+LG++ M+  + D+T + + E      + 
Sbjct: 328 GYPRLASG-----------KAHVLVNGRRCPVLGRVMMNHLIVDVTRATADERPLTATLL 376

Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368
           G D    +  + +A  + T +Y+++ R+G+   + 
Sbjct: 377 GHDGGETLPAETLAGWAQTIHYEVVTRLGSHLRRV 411


>gi|115373926|ref|ZP_01461217.1| alanine racemase [Stigmatella aurantiaca DW4/3-1]
 gi|115369054|gb|EAU67998.1| alanine racemase [Stigmatella aurantiaca DW4/3-1]
          Length = 403

 Score =  271 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 164/395 (41%), Gaps = 46/395 (11%)

Query: 8   RLKIDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
            L++   +L++N     AL    +      AV+K NAYG G E++ P L +  V   +  
Sbjct: 18  WLELSAASLRHNVEVFRALEATGAPARALGAVLKGNAYGHGLEQVLP-LVHPLVDILYFI 76

Query: 64  SVEEGVKLRLYTPQ---AR--IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
           + ++ + +R +  +   A   + V+  I P +   +    +  V++         +L + 
Sbjct: 77  TPQDALAVRAFERERKLAPRQVLVIGAISPEEAVALAREGVDAVVADSAWAEAGPRLRAA 136

Query: 119 GVSHP--YALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADD-PSSHV 174
            + HP    + +DTG  R G +L++    T      + + +++ ++SH A  +D      
Sbjct: 137 RLQHPLRVHVHIDTGLGREGFTLEQLPRDTGFLTEYRDVFEVTGVLSHFANTEDVTEQAY 196

Query: 175 NSVQLERFRTLISHY-------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
              QLE F    +           ++  +A+S+  L  P   ++  R GISLYG      
Sbjct: 197 ALAQLEAFEAGTARLVEQLSLKGPLQRHIAASAASLSLPRARYEALRVGISLYGFWPSPE 256

Query: 228 KS----------HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
                         ++ V++   R  +++    G  V YG   +    + IAV  +GY D
Sbjct: 257 TRLSTRLVLGGLPTLKPVLSWRCRSQVVKWLPEGSYVGYGCTYRCPEPTRIAVLPVGYFD 316

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           GYP   SG                + G   P+LG++ M+  + D+T + + E      + 
Sbjct: 317 GYPRLASG-----------KAHVLVNGRRCPVLGRVMMNHLIVDVTRATADERPLTATLL 365

Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368
           G D    +  + +A  + T +Y+++ R+G+   + 
Sbjct: 366 GHDGGETLPAETLAGWAQTIHYEVVTRLGSHLRRV 400


>gi|224531812|ref|ZP_03672444.1| alanine racemase [Borrelia valaisiana VS116]
 gi|224511277|gb|EEF81683.1| alanine racemase [Borrelia valaisiana VS116]
          Length = 366

 Score =  271 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 148/351 (42%), Gaps = 23/351 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+  KL+      +I +
Sbjct: 21  IKNKIGEKEIVATLKADAYGHGLINIFKFLKSKKINYFGLSNIEDAKKLKKIDKSIKILM 80

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P ++    L    K  +         L++D G NR G+ +  
Sbjct: 81  YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECALQKKKIKVHLKIDIGMNRYGIKIDS 140

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SL 196
           AL+      N K  +L  + SHL   ++  +     Q+E+F   +   K          +
Sbjct: 141 ALEIATYIQNSKFLELEGVCSHLPTTENFKT--TQKQIEQFLFFLETLKQKNINPKFVHI 198

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGE 252
           ++S  IL    N  F + RPG+ LYG +            + V+   +++I I+    GE
Sbjct: 199 SNSGHILNYKLNPQFNMVRPGLILYGYSPFPKNKKTILNFKPVLNLFSKVIFIQNVKKGE 258

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +  +D  + +  IGY DG P  ++                 I      I GK
Sbjct: 259 KISYSGIFQAKKDMKVGIIPIGYFDGIPQNINN-----------NFYFLINNKKCKIRGK 307

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           + M++T+ +I   L ++ G  ++I    + +D ++  S  +NY+LL  IG 
Sbjct: 308 VCMNITIVEIPKDLKVKTGSKVEIVSEKLSIDKMSKFSKRSNYELLCNIGK 358


>gi|37676689|ref|NP_937085.1| alanine racemase [Vibrio vulnificus YJ016]
 gi|37201232|dbj|BAC97055.1| alanine racemase [Vibrio vulnificus YJ016]
          Length = 408

 Score =  271 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 138/378 (36%), Gaps = 28/378 (7%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I L   K+N     + ++   +  AV+K +AYG G   + P +    +    + S 
Sbjct: 44  AWLEISLGQFKSNIEQFKSHIAPQTKICAVMKADAYGNGIRGLMPTILEQQIPCVAIASN 103

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
            E   +R    +  +  +      + +     ++  +I S  Q    + L      +   
Sbjct: 104 AEAKLVRESGFEGELIRVRSASTSEIEQALSLDIEELIGSEQQARELASLAEKYSKTIKV 163

Query: 125 ALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L + D G  R G  +S +                +  I++H    +            +
Sbjct: 164 HLALNDGGMGRNGIDMSTERGQKEAVAIATHPSVAVVGIMTHFPNYNAEDVRTKLKSFNQ 223

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
               +    G++       +A+S   L  P     + RPG  LYG     N  +P  ++V
Sbjct: 224 HAQWLMESAGLKREEITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NPEYP--SIV 280

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             + R+  +    AG  V Y        D+++A   +GY+DGYP  +             
Sbjct: 281 AFKTRVASLHSLPAGSTVGYDSTFTTANDAVMANLTVGYSDGYPRKMGN----------- 329

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
             +  I G    ++G  +M+ TM D+++   +  GD + +FG      I + ++   +  
Sbjct: 330 KAQVLINGQRANVVGVASMNTTMVDVSNIKGVLPGDEVTLFGAQKNQHISVGEMEENAEV 389

Query: 353 TNYDLLVRIGTRYAKFYT 370
              +L    GT   +FY 
Sbjct: 390 IFPELYTIWGTSNPRFYV 407


>gi|146743650|gb|ABQ43056.1| alanine racemase [Borrelia burgdorferi]
          Length = 352

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 146/347 (42%), Gaps = 23/347 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 19  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILM 78

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P ++    L    K  +         L++D G NR G+ + +
Sbjct: 79  YIKVDKKEIKNLIKFELVPFVADFEYLFSIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 138

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  + SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 139 ALEIATYIQNSKFLELEGVCSHLPSTENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 196

Query: 197 ASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252
           ++S  I+       F + RPG+ LYG         P    + V++  ++II I+    GE
Sbjct: 197 SNSGHIINYKLSPQFNMVRPGLILYGYCQSPKNKKPALNFKPVLSLFSKIIFIKNVKKGE 256

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  +S                 I      I GK
Sbjct: 257 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 305

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359
           + M++ + +I   L ++ G  ++I    + +D+++  S  ++Y+LL 
Sbjct: 306 VCMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLC 352


>gi|262037799|ref|ZP_06011241.1| alanine racemase [Leptotrichia goodfellowii F0264]
 gi|261748271|gb|EEY35668.1| alanine racemase [Leptotrichia goodfellowii F0264]
          Length = 374

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/380 (23%), Positives = 160/380 (42%), Gaps = 33/380 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            ++L+I+   ++ N   + +++ N     V+KDNAYGL  + I P L       F V  +
Sbjct: 2   LIKLEINRKNIEKNLEKIKSINKN--IICVLKDNAYGLEIKNILPILIENDCFYFAVAYI 59

Query: 66  EEGVKLRLY--------TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
            E ++++            + +I  L  I   + K     ++   I +  QL  Y    +
Sbjct: 60  GEALEIKKIIQKKYPDKADKIKIMTLNYIEEKEIKKTVKNDIELTIFNFEQLESYINASA 119

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G      ++++TG NRLG +  E    T         ++  + SH++ A+  +      
Sbjct: 120 KGKKLKIHIKLNTGMNRLGFNENEIDKLTEILRGNPNLEIISVFSHISHAE--NKKETEE 177

Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP 231
           Q+ ++  ++S +           + +S  +      Y++   R G+++YG    + +   
Sbjct: 178 QIIKYDKMMSVFDKNSIKYKFKHIQASPLLFKYKEKYNYDFVRTGMAIYGMEP-LKEKVG 236

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           +   V   ++II IRK   GE VSYG  + L +D  IA+  +GYA G    +        
Sbjct: 237 LYNTVKLSSKIINIRKVKKGESVSYGNGEPLEKDGKIAIIPVGYAHGLQKQIEN------ 290

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347
                     IKG    ILG+I MDM + DITD     +G    I G     +I L  +A
Sbjct: 291 ----KNAYVLIKGKRSYILGEICMDMIITDITDIEDAVIGSEAVIIGKQGSEEISLSKMA 346

Query: 348 LASGTTNYDLLVRIGTRYAK 367
             +GT   D+L +   +  +
Sbjct: 347 EWTGTIQDDVLTKWERKIKR 366


>gi|296284109|ref|ZP_06862107.1| alanine racemase [Citromicrobium bathyomarinum JL354]
          Length = 365

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 118/362 (32%), Positives = 185/362 (51%), Gaps = 25/362 (6%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           LRL ID  AL +NW +++ LSG AR  A VK + YGLG +   PAL  AG +DFFV    
Sbjct: 13  LRLAIDTAALAHNWRALDRLSGTARAGAAVKADCYGLGTQNCVPALVEAGARDFFVAHWS 72

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E   +  +    ++ VL+G+  G+E      T + PVI+S+ Q   +             
Sbjct: 73  EVAPVLDHVAPQQVAVLHGVMTGEEARYAIATGVRPVINSLHQAKVWL----DAGGGTCN 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L VDTG NRLGL+  E  D      +     + +++SHL+ A++ S   N  QL  FR  
Sbjct: 129 LMVDTGINRLGLAPTELSDPLLARLD-----VQVLMSHLSSAEEHS-AANGHQLAAFRAA 182

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +     E S+A+S+GI LG +Y   LTRPG++LYGG    + +  ++ V   +A II +
Sbjct: 183 QALLPHRETSIANSAGIALGRDYSCDLTRPGLALYGGVPTPDLAGHIRQVAFPQAAIIHV 242

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R+  AG+ V Y  +   +    +   ++GYADG+  +               G    +G 
Sbjct: 243 RRIEAGDAVGYNREFTASGPMRVGTVSLGYADGFLRSWG-----------AKGFLRHQGR 291

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365
            + +LGK++MDM + D+  +  ++VGD++ +      L D A  SG + Y+LL  +G R+
Sbjct: 292 TLRLLGKVSMDMVVVDLAQAPDLDVGDWLDV---PYHLPDAAQHSGLSQYELLTTLGHRF 348

Query: 366 AK 367
            +
Sbjct: 349 ER 350


>gi|219684698|ref|ZP_03539641.1| alanine racemase [Borrelia garinii PBr]
 gi|219672060|gb|EED29114.1| alanine racemase [Borrelia garinii PBr]
          Length = 366

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 145/357 (40%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I        +  F ++++E+   L+      +I +
Sbjct: 21  IKNKIGEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILM 80

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P ++    L    K  +         L++D G NR G+ +  
Sbjct: 81  YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECALQKKKIKVHLKIDIGMNRYGIRIDS 140

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SL 196
           AL+      N +  +L  + SHL   +  +      Q+E+F  ++   K          +
Sbjct: 141 ALEIATYIQNSQFLELEGVCSHLPATE--NFETTQKQIEKFLLVLETLKQKNINPKFVHI 198

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +         + V+   +++I I+    GE
Sbjct: 199 SNSGHIINYKINPQFNMVRPGLILYGYCQSLKNKKTTLNFKPVLNLFSKVIFIKNVKKGE 258

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  ++                 I      I GK
Sbjct: 259 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNINN-----------NFYFLINNQKCKIRGK 307

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++T+ +I   L +  G  ++I    + +D ++  S  ++Y+LL  IG    + Y
Sbjct: 308 VCMNLTIVEIPKDLKVRTGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYEKRKY 364


>gi|320158793|ref|YP_004191171.1| alanine racemase [Vibrio vulnificus MO6-24/O]
 gi|319934105|gb|ADV88968.1| alanine racemase [Vibrio vulnificus MO6-24/O]
          Length = 408

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 138/378 (36%), Gaps = 28/378 (7%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I L   K+N     + ++   +  AV+K +AYG G   + P +    +    + S 
Sbjct: 44  AWLEISLGQFKSNIEQFKSHIAPQTKICAVMKADAYGNGIRGLMPTILEQQIPCVAIASN 103

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
            E   +R      ++  +      + +   D  +  +I S  Q    + L      +   
Sbjct: 104 AEAKLVRESGFTGQLIRVRSASYSEIEQGLDLQIEELIGSEQQARELANLAEKYSKTIKV 163

Query: 125 ALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L + D G  R G  +S +                +  I++H    +            +
Sbjct: 164 HLALNDGGMGRNGIDMSTERGQKEAVAIATHPSVAVVGIMTHFPNYNAEDVRTKLKSFNQ 223

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
               +    G++       +A+S   L  P     + RPG  LYG     N  +P  ++V
Sbjct: 224 HAQWLMESAGLKREEITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT-NPEYP--SIV 280

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
             + R+  +    AG  V Y        D+++A   +GY+DGYP  +             
Sbjct: 281 AFKTRVASLHSLPAGSTVGYDSTFTTANDAVMANLTVGYSDGYPRKMGN----------- 329

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352
             +  I G    ++G  +M+ TM D+++   +  GD + +FG      I + ++   +  
Sbjct: 330 KAQVLINGQRANVVGVASMNTTMVDVSNIKGVLPGDEVTLFGAQKNQHISVGEMEENAEV 389

Query: 353 TNYDLLVRIGTRYAKFYT 370
              +L    GT   +FY 
Sbjct: 390 IFPELYTIWGTSNPRFYV 407


>gi|124009567|ref|ZP_01694241.1| alanine racemase [Microscilla marina ATCC 23134]
 gi|123984806|gb|EAY24781.1| alanine racemase [Microscilla marina ATCC 23134]
          Length = 383

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 164/386 (42%), Gaps = 40/386 (10%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++  +AL+ N + +  L+G   R ++V+K NAYG G +   P    AGV+ F V S +E
Sbjct: 7   IELSQSALQKNINFIKTLAGDGVRMSSVIKGNAYGHGIDLFVPMAEKAGVRHFSVFSADE 66

Query: 68  GVKL---RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHP 123
            +++   + +  +  + ++  IH  +     + N+   I  + +L    +L +       
Sbjct: 67  ALQVVQSQQHGSK--VMIMGHIHNEELLWAIENNVELFIFDLGRLETSLQLAAKNKAQVR 124

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVN-SVQLER 181
             L ++TG NRLGL   E L              L  + +H A A+  +++     Q+  
Sbjct: 125 IHLHLETGMNRLGLEEDELLKAIDLLKKYPDCFHLEGVCTHYAGAESIANYARVKSQIHE 184

Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD-----------K 225
           ++         E        A S+ ++  P     + R GI  YG              K
Sbjct: 185 YKRRTRLLSRHEISPKYQHTACSAALVSYPQTRMDMVRVGILQYGFFPTQETLIQYLKNK 244

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
            +K+ P+  V+  ++RI+  ++   GE V YG       DS IAV  +GYA GY   LS 
Sbjct: 245 EDKTDPLARVLNWKSRIMSTKEVSTGEFVGYGTTYMAAADSRIAVVPVGYAQGYSRLLSN 304

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
                       G+  I G  + ++G + M++ + D+T++   + GD + + G      I
Sbjct: 305 Q-----------GRVLICGKQLSVIGTVNMNLILVDLTEAPEAQPGDEVVLIGSQGDLSI 353

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367
            +      +   NY+LL R+     +
Sbjct: 354 SVASFGEFTNQLNYELLTRLPMSIPR 379


>gi|51598420|ref|YP_072608.1| alanine racemase [Borrelia garinii PBi]
 gi|51572991|gb|AAU07016.1| alanine racemase [Borrelia garinii PBi]
 gi|146743654|gb|ABQ43058.1| alanine racemase [Borrelia garinii PBi]
          Length = 366

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/357 (22%), Positives = 148/357 (41%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I        +  F ++++E+   L+      +I +
Sbjct: 21  IKNKIGEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILM 80

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P ++    L    K  +         L++D G NR G+ +  
Sbjct: 81  YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECAFQKKKIKVHLKIDIGMNRYGIRIDS 140

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE-----ASL 196
           AL+      N +  +L  I SHL   ++  +     Q+E+F  ++   K          +
Sbjct: 141 ALEIATYIQNSQFLELEGICSHLPATENFKT--TQKQIEKFLLVLETLKQKNINPKFIHI 198

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +         + V+   +++I I+    GE
Sbjct: 199 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKTTLNFKPVLNLFSKVIFIKNVKKGE 258

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  ++                 I      I GK
Sbjct: 259 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNINN-----------NFYFLINNQKCKIKGK 307

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++T+ +I  +L + +G  ++I    + +D ++  S  ++Y+LL  IG    + Y
Sbjct: 308 VCMNLTIVEIPKNLKVRIGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYEKRKY 364


>gi|188501452|gb|ACD54585.1| alanine racemase-like protein [Adineta vaga]
          Length = 404

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/380 (24%), Positives = 158/380 (41%), Gaps = 30/380 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVE 66
           ++IDL A++ N     ++ +   +   +VK +AYG+G +KI         +    V    
Sbjct: 26  MRIDLNAMRCNLEQFCSVVASTTKMMMIVKASAYGVGIKKIGKWAEKTRLIDYLAVVYTA 85

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV----PQLTFYSKLMSCGVSH 122
           EGV+LR       I ++  I     KI  + NL  VI S+      + +  K        
Sbjct: 86  EGVELRKANIHLPIMIIN-IDKEDFKICQEYNLELVIYSISLLQQLMIWLEKNTQICSFP 144

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFN--KKLGQLSLIISHLACADDP-SSHVNSVQL 179
              ++++TG NRLGL + E   F +  F   +    +  I +H+A +DDP      + Q 
Sbjct: 145 SIHVKINTGMNRLGLDIDEIPVFLNILFKYTRCRLMVKSIYTHVAASDDPQEDQYTADQT 204

Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ- 233
             + + +   +      +   + +S GIL  PN HF + R G  LYG  +          
Sbjct: 205 RAYLSSVHILETGLGYTVLKHMCNSMGILRHPNLHFDMVRVGGGLYGAAECFLPYMSTLL 264

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             ++  + +  +R       + Y  + ++ RDS I +  +GYADG    L          
Sbjct: 265 PAISMISTVTQVRHVKKDSTIGYNRRGRVNRDSFIGILRLGYADGLRRQLGNGH------ 318

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE----VGDYIQIFGPDIKLDDVALA 349
               G  +I    V  +G I MD  M D+TD           + ++IFG    ++++A  
Sbjct: 319 ----GHVWIHDCRVSFIGSICMDFAMIDLTDVPIDNKYELENESVEIFGSHNNIEEIARC 374

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           S T  +D +  IG R  + Y
Sbjct: 375 SDTIVFDFISTIGKRVKRVY 394


>gi|54303604|ref|YP_133597.1| alanine racemase [Photobacterium profundum SS9]
 gi|46917035|emb|CAG23797.1| putative alanine racemase [Photobacterium profundum SS9]
          Length = 405

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 146/380 (38%), Gaps = 28/380 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L++ L   K+N     + +  + +  AV+K +AYG G   + P +    +    +
Sbjct: 38  QSNSWLEVSLGQFKSNIEQFKSHIKADTKICAVMKADAYGNGIFGLMPTILEQQIPCVAI 97

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
            S  E   +R    + ++  +     G+ K   D N+  +I S  Q  F ++L +     
Sbjct: 98  ASNAEARAVRESGFKGQLLRVRSASLGEIKQSLDLNIEELIGSHQQAKFIAELGVERNQK 157

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L + D G  R G  +S ++      +   +    +  I++H    +     V    
Sbjct: 158 INVHLALNDGGMGRNGIDMSTEQGKAEALDIATQANLNIVGIMTHFPNYNADKVRVKLKD 217

Query: 179 LE-----RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +       +        +   +A+S   +  P     + RPG  LYG     N  +P  
Sbjct: 218 FQTNSSWLIKQADLKRDELTLHVANSYVSINVPEAQLDMVRPGGVLYGDLPT-NPEYP-- 274

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + RI  I +  A + V Y       RDS++A   +GY+DGYP  +          
Sbjct: 275 SIVSFKTRIASIHQLPASQTVGYDSTYITKRDSVLANLPVGYSDGYPRRMGNQ------- 327

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                   I G    ++G  +M+ ++ DITD   ++ G  + +FG      I + ++   
Sbjct: 328 ----ADVIINGQRAKVVGVTSMNTSIVDITDIKGVKQGQEVTLFGKQKNVQISVAEMEDY 383

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           S     +L    G    ++Y
Sbjct: 384 SKLIFPELYTMWGQANPRYY 403


>gi|111114981|ref|YP_709599.1| alanine racemase [Borrelia afzelii PKo]
 gi|216263804|ref|ZP_03435798.1| alanine racemase [Borrelia afzelii ACA-1]
 gi|110890255|gb|ABH01423.1| alanine racemase [Borrelia afzelii PKo]
 gi|146743656|gb|ABQ43059.1| alanine racemase [Borrelia afzelii PKo]
 gi|215979848|gb|EEC20670.1| alanine racemase [Borrelia afzelii ACA-1]
          Length = 366

 Score =  269 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 147/357 (41%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I        +  F ++++E+   L+      +I +
Sbjct: 21  IKNKIGEKEIVATLKGDAYGHGLINIFKFFKAKKINYFGLSNIEDAKTLKKIDKSTKILM 80

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P ++    L    K  +         L++D G NR G+ +  
Sbjct: 81  YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECALQKKKIKVHLKIDVGMNRYGIKIDS 140

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SL 196
           AL+      N K  +L  + SHL   ++    +   Q+E+F   +   K          +
Sbjct: 141 ALEIATYIQNSKFLELEGVCSHLPTTENFK--ITQKQIEQFLFFLETLKQKNINPKFVHI 198

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +         + V+   ++++ I+    GE
Sbjct: 199 SNSGHIINYKLNPQFNMVRPGLILYGYCPTLKNKKTTLNFKPVLNLFSKVVFIKNVKKGE 258

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  ++                 I      I GK
Sbjct: 259 KISYSGTFQAKEDMKIGIIPIGYFDGIPQNINN-----------NFYFLINNKKCKIRGK 307

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++T+ +I   L +E G  ++I    + +++++  S  ++Y+LL  IG    + Y
Sbjct: 308 VCMNLTIVEIPKDLKVETGSKVEIVSEKLSINEMSKFSKRSHYELLCNIGKYENRKY 364


>gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
          Length = 835

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 166/375 (44%), Gaps = 27/375 (7%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL +N  S  AL     R   + K   YG+G  ++A AL    +    V   +E
Sbjct: 471 LEIDLEALVSNLKSYKALLPSETRIIVMAKAQGYGIGAYELAKALEQQDLAALAVALADE 530

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPYA 125
           G +LR       I V+        +++  + L P I +   L  +++ +       +P  
Sbjct: 531 GKELRSKGILLPIIVMNP-EVEAFEVMTQSRLEPEIYNERILREFARHVERQGLSHYPVH 589

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFN--KKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           +++DTG +R G +   E L+    + +  + L ++  I +HLA AD+P+ S     Q   
Sbjct: 590 IELDTGMHRTGFTPDRETLEHLAQTLHEVEPLIRVQSIFTHLAAADEPTMSDFTEQQFAL 649

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +     +            + +++GI    ++H+ + R G+ LYG +     S  ++ V 
Sbjct: 650 YDEGADYLTSQLSYRPLRHVQNTAGIERYNHHHYDMARLGVGLYGISAT--GSLTLEPVA 707

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ I+    GE + YG + ++     I +  IGYADGY    S            
Sbjct: 708 KLRTTLLQIKTIPDGETIGYGRRGQVAPGGQIGIIPIGYADGYDRRFS----------CG 757

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFG-PDIKLDDVALASGTTN 354
            G   I   + PI+G + MD  M D++     +  GD + IFG P +++ D+A   GT  
Sbjct: 758 VGSVMIHDTLCPIVGNVCMDTCMVDLSPLQGKVAEGDEVIIFGVPGLQVSDLAERIGTIP 817

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++ ++  R  + Y
Sbjct: 818 YEVISKLSPRIKRTY 832


>gi|254226880|ref|ZP_04920449.1| alanine racemase [Vibrio cholerae V51]
 gi|125620597|gb|EAZ48962.1| alanine racemase [Vibrio cholerae V51]
          Length = 411

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 142/373 (38%), Gaps = 28/373 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   ++N     +  S N +  A++K +AYG G   + P +   G+    V
Sbjct: 47  QSNSWLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGV 106

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121
            S  E   +R    +  +  +      +   + D N+  +I +  Q    ++L    G +
Sbjct: 107 ASNAEARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKT 166

Query: 122 HPYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + + D G  R G  ++ +       +   +    +  I++H    +         Q
Sbjct: 167 IKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQ 226

Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            +   T +     ++       +A+S   L  P     + RPG  L+G     N  +P  
Sbjct: 227 FKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPT-NPEYP-- 283

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
           ++V+ + R+  +     G  V Y      +RDS++A   +GY+DGYP  +          
Sbjct: 284 SIVSFKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-------- 335

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                +  I G    ++G  +M+ T+ D+T+   +  G  + +FG      I + ++   
Sbjct: 336 ---KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVIPGQEVVLFGQQQKQSIAVSEMENN 392

Query: 350 SGTTNYDLLVRIG 362
           +     +L    G
Sbjct: 393 AELIFPELYTLWG 405


>gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 835

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 166/375 (44%), Gaps = 27/375 (7%)

Query: 9   LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL +N  S  AL     R   + K   YG+G  ++A AL    +    V   +E
Sbjct: 471 LEIDLEALVSNLKSYKALLPSETRIIVMAKAQGYGIGAYELAKALEQQDLAALAVALADE 530

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPYA 125
           G +LR       I V+        +++  + L P I +   L  +++ +       +P  
Sbjct: 531 GKELRSKGILLPIIVMNP-EVEAFEVMTQSRLEPEIYNERILREFARHVERQGLSHYPVH 589

Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFN--KKLGQLSLIISHLACADDPS-SHVNSVQLER 181
           +++DTG +R G +   E L+    + +  + L ++  I +HLA AD+P+ S     Q   
Sbjct: 590 IELDTGMHRTGFTPDRETLEHLAQTLHEVEPLIRVQSIFTHLAAADEPTMSDFTEQQFAL 649

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +     +            + +++GI    ++H+ + R G+ LYG +     S  ++ V 
Sbjct: 650 YDEGADYLTSQLSYRPLRHVQNTAGIERYNHHHYDMARLGVGLYGISAT--GSLTLEPVA 707

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ I+    GE + YG + ++     I +  IGYADGY    S            
Sbjct: 708 KLRTTLLQIKTIPDGETIGYGRRGQVAPGGQIGIIPIGYADGYDRRFS----------CG 757

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFG-PDIKLDDVALASGTTN 354
            G   I   + PI+G + MD  M D++     +  GD + IFG P +++ D+A   GT  
Sbjct: 758 VGSVMIHDTLCPIVGNVCMDTCMVDLSPLQGKVAEGDEVIIFGVPGLQVSDLAERIGTIP 817

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++ ++  R  + Y
Sbjct: 818 YEVISKLSPRIKRTY 832


>gi|269120416|ref|YP_003308593.1| alanine racemase [Sebaldella termitidis ATCC 33386]
 gi|268614294|gb|ACZ08662.1| alanine racemase [Sebaldella termitidis ATCC 33386]
          Length = 367

 Score =  268 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 161/356 (45%), Gaps = 28/356 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +KI+   +  N   +  ++       VVKD+AYGLG E I P LYN G + + V   EE 
Sbjct: 5   VKINRENIIKNLKRIRNMTP---LICVVKDDAYGLGIENILPVLYNEGERYYAVAFFEEA 61

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127
            ++R       I +L      +        +   + S+ Q   +   L          ++
Sbjct: 62  SEIRKMYEDVNIIILNYTEEEKLHEAVKDKIEVSVFSMLQLHRYIEILGDKIPELGIHIK 121

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
            +TG NRLG  ++E  +      ++   Q+  + SH++ +++  +     QLE+F  + +
Sbjct: 122 FNTGMNRLGFDIEETPELCR-IISENNLQVKSVFSHISNSENIEN--TEKQLEKFENITN 178

Query: 188 HYKGIE-----ASLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
             K  E       +++S  +      Y+F  +R G+++YG    ++K   ++  ++ E++
Sbjct: 179 LLKKHEINYGFRHISASPALFQYTGKYNFDFSRVGMAIYGLEP-LSKDTGLEKCISIESK 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           II I+    GE +SYG   +L +D+ + +  +GYA G  + +             G    
Sbjct: 238 IINIKNVKKGEYISYGENNRLEKDTAVGIIPMGYAQGIQMQIEN----------KGAYAL 287

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
           I G   P++G++ MDM + DI+   ++ + D + + G     +I L D++  + T 
Sbjct: 288 INGKKAPVIGEVCMDMLLLDISGIENVNLLDSVVLLGKSGNEEITLRDISKWTSTI 343


>gi|160941188|ref|ZP_02088525.1| hypothetical protein CLOBOL_06081 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435749|gb|EDP13516.1| hypothetical protein CLOBOL_06081 [Clostridium bolteae ATCC
           BAA-613]
          Length = 392

 Score =  268 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 138/360 (38%), Gaps = 30/360 (8%)

Query: 8   RLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+I L  +++N+ +   +   + +    VK NAYG G       L   G     + S+ 
Sbjct: 11  WLEISLDNVRDNFFAFKKMVGPDVKVMPAVKANAYGHGIVPCGKELEACGADYLGMGSIS 70

Query: 67  EGVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E +KLR    +  + V          ++    +LIP I S  +    S   S     P  
Sbjct: 71  EAIKLRENGVKMPLLVFASNTIEEVAELYIQYHLIPTILSEREAKAISDAASS--PVPVF 128

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS--SHVNSVQLERFR 183
           +++DTG  RLG++ +E  DF           +  + SH+A  + P   +     Q ERF 
Sbjct: 129 VKIDTGRGRLGVNAEEFPDFYRKITALPNLYVEGVYSHMAAVNWPDVSAEYGLWQYERFS 188

Query: 184 TLI----SHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TV 235
             I       K I    LA++ G +  P        PG +++G +    +    Q    +
Sbjct: 189 AAIEVLGEEGKKIPFCQLANTPGGIALPEIRMTGVCPGRAIWGYSPLDRREGHPQLKHPI 248

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
              ++R+I I +   G+        KL     I + A G  DG    L+G          
Sbjct: 249 TAWKSRLIHINQVCGGKFGENYKAVKLDSPKRIGIMAGGLGDGISPKLAG---------- 298

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351
             G   + G    +   I+++ T+ D+ D    +VGD I I G     +I ++      G
Sbjct: 299 --GYVLLHGRKAKVASTISLEHTIIDLADFPDAKVGDEIVILGRQGDEEITMEQRMEEWG 356


>gi|85374046|ref|YP_458108.1| alanine racemase [Erythrobacter litoralis HTCC2594]
 gi|84787129|gb|ABC63311.1| alanine racemase [Erythrobacter litoralis HTCC2594]
          Length = 348

 Score =  268 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 184/366 (50%), Gaps = 28/366 (7%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             LRL ID  AL+ NW +++ LSG AR  A VK + YGLG +   P L +AG +DFFV  
Sbjct: 8   RTLRLDIDREALEANWRALDRLSGKARAGAAVKADCYGLGVDTCVPVLRDAGARDFFVAH 67

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP 123
             E   +  +    +I VL+G +  +E          PV++S+ Q   +          P
Sbjct: 68  WSEVADVARHVLPEQIAVLHGANTAEEAEYARSIGARPVVNSLHQANVWI----DSGGGP 123

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             + VDTG +RLG++  E         +     + +++SHL+ AD+  + VN+ QLE FR
Sbjct: 124 CHMMVDTGIHRLGIAPSEVAANVIRQLD-----VQVLMSHLSSADE-DTPVNAAQLEAFR 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
            L       E SLA+S+GI L  ++ F LTRPG+SLYGG  +   +  ++ V   +A II
Sbjct: 178 ALKGQLGAQELSLANSAGIGLNDDFAFDLTRPGLSLYGGVQRPELAEHIRQVAYPKAAII 237

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            + +  AG+ V Y G+        +   ++GYADG+     G               + +
Sbjct: 238 QVAELRAGDHVGYNGEFTAPDAMRVGTVSLGYADGFLRAWGGKGLAL----------YHE 287

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD--DVALASGTTNYDLLVRI 361
           G  +P+LGK++MDM + D+     + VG ++     D+  D    + A+G + Y+LL  +
Sbjct: 288 GRSLPLLGKVSMDMVVVDLAAEPDLSVGTWL-----DVPYDLPRASEATGLSQYELLTIL 342

Query: 362 GTRYAK 367
           G R+A+
Sbjct: 343 GQRFAR 348


>gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
 gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
          Length = 843

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 166/375 (44%), Gaps = 27/375 (7%)

Query: 9   LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+IDL AL NN  S  AL S   R   + K   YG+G  ++A AL    +    V   +E
Sbjct: 479 LEIDLEALVNNLKSYKALLSPETRIIVMAKAQGYGIGAYELAKALEQQDLAALAVALADE 538

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPYA 125
           G +LR       I V+        +++  + L P I +   L  +++ +       +P  
Sbjct: 539 GKELRSKGILLPIIVMNP-EVEAFEVMTQSRLEPEIYNERILREFARHVERQGLSHYPVH 597

Query: 126 LQVDTGFNRLGLSLQEA-LDFTHNSFN--KKLGQLSLIISHLACADDP-SSHVNSVQLER 181
           +++DTG +R G +   A L+    + +  + L ++  I +HLA AD+P  S     Q   
Sbjct: 598 IELDTGMHRTGFTPDRATLEHLAQTLHEVEPLIRVQSIFTHLAAADEPMMSDFTEQQFAL 657

Query: 182 FRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           +     +            + +++G+    ++H+ + R G+ LYG +     S  ++ V 
Sbjct: 658 YDEGADYLTSQLSYRPLRHVQNTAGMERYNHHHYDMARLGVGLYGISAT--GSLTLEPVA 715

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
                ++ I+    GE + YG + ++     I +  IGYADGY    S            
Sbjct: 716 KLRTTLLQIKTIPDGETIGYGRRGQVAPGGQIGIIPIGYADGYDRRFS----------CG 765

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFG-PDIKLDDVALASGTTN 354
            G   I   + PI+G + MD  M D+T     +  GD + IFG P +++ D+A   GT  
Sbjct: 766 VGSVMIHDTLCPIVGNVCMDTCMVDLTALQGKVAEGDEVIIFGVPGLQVSDLAERIGTIP 825

Query: 355 YDLLVRIGTRYAKFY 369
           Y+++ ++  R  + Y
Sbjct: 826 YEVISKLSPRIKRTY 840


>gi|289828987|ref|ZP_06546687.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
          Length = 279

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 82  VLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ 140
           +L G    Q+   +D   L   I S  QL                ++V++G NRLG   +
Sbjct: 1   MLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPLDIYVKVNSGMNRLGFQPE 59

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA--SLAS 198
            A          +      ++SH A AD P         E  R +    +G++   SL++
Sbjct: 60  RAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAMRRIALATEGLQCAYSLSN 114

Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELV 254
           S+  L  P  H+   RPGI LYG +            ++ V+T  + II ++   AGE V
Sbjct: 115 SAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLSSEIIGVQTLSAGERV 174

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            YGG   +T++  I + A GYADGYP                G    + G     +G ++
Sbjct: 175 GYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTPVLVDGIRTRTVGTVS 223

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y LL  +  R  
Sbjct: 224 MDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLLCAVAPRVP 275


>gi|224534199|ref|ZP_03674777.1| alanine racemase [Borrelia spielmanii A14S]
 gi|224514301|gb|EEF84617.1| alanine racemase [Borrelia spielmanii A14S]
          Length = 372

 Score =  266 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/351 (22%), Positives = 144/351 (41%), Gaps = 23/351 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I        +  F ++++E+   L+      +I +
Sbjct: 27  IKNKIGEKEIVATLKGDAYGHGLINIFKFFKAKKINYFGLSNIEDAKTLKKIDKSTKILM 86

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P ++    L    K  +         L++D G NR G+ +  
Sbjct: 87  YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECALQKKKIKVHLKIDVGMNRYGIKIGS 146

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE-----ASL 196
           AL+      N K  +L  + SHL   ++    +   Q+E+F   +   K          +
Sbjct: 147 ALEIAKYIQNSKFLELEGVCSHLPTTENFK--ITQKQIEQFLFFLETLKQKNINPKFIHI 204

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +         + V+   ++++ I+    GE
Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYYPSLKNKKTTLNFKPVLNLFSKVVFIKNVKKGE 264

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  ++                 I      I GK
Sbjct: 265 KISYSGTFQAKEDMQIGIIPIGYFDGIPQNINN-----------NFYFLINNKKCKIRGK 313

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           + M++T+ +I   L +E G  ++I    + +D+++  S  + Y+LL  IG 
Sbjct: 314 VCMNLTIVEIPKDLKVETGLKVEIVSEKLSIDEMSKFSKRSPYELLCNIGK 364


>gi|145298692|ref|YP_001141533.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851464|gb|ABO89785.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 408

 Score =  266 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 142/350 (40%), Gaps = 24/350 (6%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
            +     L++DLTA + N  ++    G+   +  A++K +AYG G + + P++  A +  
Sbjct: 37  QTASNAWLEVDLTAFEQNLQTLKTRLGDKGPQICAIMKADAYGHGIDLLVPSVVKANIPC 96

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118
             + S EE    R      R+  +    P + +      L  ++ S+      S +    
Sbjct: 97  IGIASNEEARVAREKGFSGRLMRVRAATPIEVEQALPYKLEELVGSLVSAQGISDIALRH 156

Query: 119 GVSHPYALQVDT-GFNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
             + P  + +++ G +R G+   L +A          K      I++H    +     + 
Sbjct: 157 HTTIPVHVALNSAGMSRNGIDLRLADAKQDALAMLKLKGITPVGIMTHFPVEEKEDVKLG 216

Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             Q +     +          I    A+S   L  P+ +F + RPG  LYG  D I    
Sbjct: 217 LAQFKLDSQWLLEAGKLDRSKITIHAANSFATLAVPDAYFDMVRPGGLLYG--DSIPSYT 274

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             + V+  + ++  +    AG  V Y     L RDS +A   +GY+DGY   LS      
Sbjct: 275 EYKRVMAFKTQVASVNHYAAGNTVGYDRTFTLKRDSWLANLPLGYSDGYRRALSN----- 329

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                      I+G  VP++GK +M+  M D+TD   ++ GD + +FG  
Sbjct: 330 ------KAYVLIQGQKVPVVGKTSMNTIMVDVTDLKGVKPGDEVVLFGRQ 373


>gi|219685888|ref|ZP_03540693.1| alanine racemase [Borrelia garinii Far04]
 gi|219672556|gb|EED29590.1| alanine racemase [Borrelia garinii Far04]
          Length = 366

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 77/357 (21%), Positives = 144/357 (40%), Gaps = 23/357 (6%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G       +K +AYG G   I        +  F ++++E+   L+      +I +
Sbjct: 21  IKNKIGEKEIVVTLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILM 80

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P ++    L    K  +         L++D G NR G+ +  
Sbjct: 81  YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECALQKKKIKVHLKIDIGMNRYGIRIDS 140

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SL 196
           AL+      N +  +L  I SHL   ++  +     Q+E+F  ++   K          +
Sbjct: 141 ALEIATYIQNSQFLELEGICSHLPATENFKT--TQKQIEKFLLVLETLKQKNINPKFVHI 198

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGE 252
           ++S  I+    N  F + RPG+ LYG    +         + V+   +++I I+    GE
Sbjct: 199 SNSGHIINYKINPQFNMVRPGLILYGYCQSLKNKKTTLNFKPVLNLFSKVIFIKNVKKGE 258

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            +SY G  +   D  I +  IGY DG P  ++                 I      I GK
Sbjct: 259 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNINN-----------NFYFLINNQKCKIRGK 307

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + M++ + +I   L +  G  ++I    + +D ++  S  ++Y+LL  IG    + Y
Sbjct: 308 VCMNLAIVEIPKDLKVRTGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYEKRKY 364


>gi|308234831|ref|ZP_07665568.1| alanine racemase [Gardnerella vaginalis ATCC 14018]
          Length = 356

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/335 (25%), Positives = 142/335 (42%), Gaps = 36/335 (10%)

Query: 71  LRLYTPQ---ARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYA 125
           LR         RI   L          + + ++   + S+  +   +    S G +    
Sbjct: 1   LRACGIDSSRCRILTWLTSAPTSLFADLINADIDISVGSLDSIDAVALAAKSVGAAARIH 60

Query: 126 LQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV----NSVQ 178
           ++VDTGF R G +     +AL+      ++ L ++    SHLA AD P           Q
Sbjct: 61  VKVDTGFGRNGFTPAGFSDALEKLSEYSSQGLIEVIGQWSHLAVADCPDVPEFVSSTDRQ 120

Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM- 232
           +E+F         +  +     LA+++  L  P   F+L RPGI LYG         P  
Sbjct: 121 IEQFHDFTRRMCEAGLEPKIRHLANTAATLNRPEIRFELVRPGIGLYGYEPDPVMGVPQT 180

Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
              +  +T +A++  ++   AG  +SYG       ++  A+  +GYADG     SG D +
Sbjct: 181 YDLRPAMTLQAQLGTVKSVEAGHGISYGRTYLTPDNTSTAIVPLGYADGILRAASGYDMQ 240

Query: 290 HSPSVFL-GGKGFI---KGYMV-PILGKITMDMTMFDI---TDSLSIEVGDYIQIFGP-- 339
            S  V   GG   +    G  +  + G++ MD  + D+      L ++ GD +++FGP  
Sbjct: 241 GSRHVNKPGGPVRVETNNGARILHVSGRVCMDQFIVDLKGSAKELGVKEGDTVRLFGPGR 300

Query: 340 -----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
                +   DD A A+GT +Y+++  IG R  + Y
Sbjct: 301 GIEYAEPTADDWAAAAGTISYEIMTGIGPRVPRLY 335


>gi|226226855|ref|YP_002760961.1| alanine racemase [Gemmatimonas aurantiaca T-27]
 gi|226090046|dbj|BAH38491.1| alanine racemase [Gemmatimonas aurantiaca T-27]
          Length = 403

 Score =  265 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 100/407 (24%), Positives = 156/407 (38%), Gaps = 60/407 (14%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPAL----YN-- 54
           M   +   L +D +AL++N   +   +       +VK ++YGLG   +  AL        
Sbjct: 1   MTRQDRAWLDVDGSALRHNLAVLRQHA-RVPLLPMVKADSYGLGAIGVCRALGVPFAEGS 59

Query: 55  ---------AGVQ---DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102
                    AG        + S++E   LR    + RI     +   +       ++ P 
Sbjct: 60  VHAPTSTGTAGADAPWGVGIASLDEAEALRDAGCEGRILCATPLLARELPRALALSVRPA 119

Query: 103 ISSVPQLTFYSKL-------------MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS 149
           +     L  +  L             ++C    PY L +DTG  R G             
Sbjct: 120 LHRAEDLVAWQALSAARGVAHGVAHGVACDAVAPYHLSIDTGMARAGARWDTVARLRDAV 179

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK-----GIEASLASSSGIL- 203
                     + +H   AD+ S      Q  RF   ++  +     GI     +S GI  
Sbjct: 180 LAVP---PEGVFTHFHSADE-SLPSRDEQDARFADALTVLRDVLPAGILEHRDNSGGIAS 235

Query: 204 LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
                  QL RPGI+LY G    +    ++ V    AR++ +R  L GE VSYG      
Sbjct: 236 RTTGSPGQLARPGIALYAGM--FSAELGLRQVAHLRARVVDVRDVLPGESVSYGATWTAE 293

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
               IA  + GYADGY   LS +           G+  I G   P++G++TMDMTM D++
Sbjct: 294 GTHRIATLSAGYADGYRRHLSNV-----------GEVLIHGTRCPVVGRVTMDMTMVDVS 342

Query: 324 DSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYA 366
            ++    GD   + G D    +  + VA  +G + Y+LLV +  R  
Sbjct: 343 -AVRCAPGDVATMLGADGSQVLTAEAVAGRAGVSPYELLVGLCLRVP 388


>gi|320532158|ref|ZP_08033029.1| alanine racemase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135625|gb|EFW27702.1| alanine racemase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 386

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 146/370 (39%), Gaps = 57/370 (15%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL A+ +N   +  ++G     AVVK +AYG G   IA    +AG     V  + E
Sbjct: 28  RAVIDLEAVAHNGRRLAQVAG-VPWMAVVKADAYGHGLGPIALTALSAGASWLGVAQLAE 86

Query: 68  GVKLR----LYTPQAR----------IF-----VLYGIHPGQEK----IIFDTNLIPVIS 104
            + LR                     +      V+       E          +L   +S
Sbjct: 87  ALTLRSLLDEAGVSRPAGEPSAQAPRVLTWLLPVMEPARAAAEDSPLRAALAADLDLSVS 146

Query: 105 SVPQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLI 160
           ++PQL   S    + G +    L+VDTG +R G + +E          + ++    +  +
Sbjct: 147 TLPQLEALSAAARAQGRAARLHLKVDTGMSRGGAAPEELPALAVALRRAVDEGTVDVVGL 206

Query: 161 ISHLACADDPSSHVNSVQLERFRTL-----ISHYKGIEASLASSSGILLGPNYHFQLTRP 215
            SHL+ AD+P+S      LER+R        +        LA++ G+L  P     L R 
Sbjct: 207 WSHLSRADEPASGSTEEHLERYRQAEHVVRAAGLNPPIRHLAATGGLLWHPQARMDLVRA 266

Query: 216 GISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
           GI LYG +            ++  +  E+ ++ +++  AG+ VSYGG      D  + + 
Sbjct: 267 GIGLYGLSPDPSVATGAELGLRPAMRLESPLVQVKRIEAGQAVSYGGTWSAPTDRWVGLV 326

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---- 327
            +GY+DG P   S             G   + G M  I+G++ MD  + D+  ++     
Sbjct: 327 PLGYSDGIPRAAS-----------SAGPVGVGGIMTSIVGRVCMDQVVVDLGPAVDETGA 375

Query: 328 -----IEVGD 332
                  VGD
Sbjct: 376 PLPAPARVGD 385


>gi|158425840|ref|YP_001527132.1| alanine racemase [Azorhizobium caulinodans ORS 571]
 gi|158332729|dbj|BAF90214.1| alanine racemase [Azorhizobium caulinodans ORS 571]
          Length = 374

 Score =  264 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 161/369 (43%), Gaps = 13/369 (3%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           + +   L+IDL A++ NW ++ A        AVVK NAYG G  +I P L + G +DF+V
Sbjct: 5   TADLATLEIDLGAVRQNWRTVRAQYRGPTLGAVVKQNAYGFGLSRIVPLLSSLGCRDFWV 64

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             +EE + +R   P AR+FVL+G+            +IPV+    +L       +     
Sbjct: 65  VCIEEALAVRTLAPDARVFVLHGLAGAAPADFRAHRIIPVLMDASELPRVQAEAAARGPL 124

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
             A+Q DTG +RLGLS  +      +       +++  ++HLA   +P +  N  Q  RF
Sbjct: 125 DVAIQFDTGLSRLGLSRTDVKRLRDDPSPLAGLRIAAYVTHLAHFSNPVARHNDWQWRRF 184

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           R           S  +S+G+   P  H    R G +LYG     +   P+       A I
Sbjct: 185 RAWTQALPPAPLSFCASAGVFGPPERHAHHARVGSALYGVETTPSSRQPILPAARLTAPI 244

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + +    AG  V YGG  +  + + +A   +GY  G P +                 G++
Sbjct: 245 LRVMDVPAGTEVGYGGVYRTPQPARLAHVGVGYGGGLPFSFQ-----------RQAYGYV 293

Query: 303 KGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            G   PI+  + M +   D++         G  +++FGP   +D +A A+G     ++V 
Sbjct: 294 GGLPAPIVSGLAMSLMTLDVSGLPEGLAVPGAQVELFGPAQPVDILAAAAGVAPNVVMVS 353

Query: 361 IGTRYAKFY 369
            G R  + Y
Sbjct: 354 AGARTRRVY 362


>gi|193077032|gb|ABO11785.2| alanine racemase [Acinetobacter baumannii ATCC 17978]
          Length = 430

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 144/364 (39%), Gaps = 34/364 (9%)

Query: 7   LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             +++D  A ++N    N L +G  +   V+K NAYG   + + P++    V    +TS 
Sbjct: 47  AWIEVDTQAFEDNIKRTNQLLNGKTQLCVVMKANAYGHSIDLLMPSVMKLNVSCIGITSN 106

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPY 124
            E   +R +  + +I  L      +       N+  ++ +  Q T  SK       +  Y
Sbjct: 107 AEAAMVRKHGYKGKITRLRTATDSEIINAHALNIEELLGNYDQATRISKWAEANNTTVHY 166

Query: 125 ALQVDTG-FNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           +L +++G  +R G  +S  +  +           ++  I++H A            +L +
Sbjct: 167 SLALNSGGMDRNGLEMSTAQGKEQAVAITKLPNLKIDGIMTHYAV---EDEKYVRERLAQ 223

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F    +          K +    A+S   +  P  H  + R G  +YG      +    +
Sbjct: 224 FNEQTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFPNHPE---YK 280

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            ++  + +I  +   L G  V Y     LTRDS +A   +GY+DGY  + S         
Sbjct: 281 RMMAFKTQIAAVNNYLKGSTVGYDQTYTLTRDSKLANLPVGYSDGYRRSFSN-------- 332

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVALA 349
                   + G   P++G+++M+  M D+TD    + GD + +FG     +    D+   
Sbjct: 333 ---KAFVLVNGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGRQGNAEVQSSDLTSL 389

Query: 350 SGTT 353
           +G  
Sbjct: 390 TGHI 393


>gi|257126443|ref|YP_003164557.1| alanine racemase [Leptotrichia buccalis C-1013-b]
 gi|257050382|gb|ACV39566.1| alanine racemase [Leptotrichia buccalis C-1013-b]
          Length = 390

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/393 (23%), Positives = 162/393 (41%), Gaps = 53/393 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+I+   L+ N   +  ++ N     V+KDNAYGLG   I P L       F V  ++E 
Sbjct: 5   LEINKENLEKNLEKIRFINKN--IICVIKDNAYGLGIGNILPILIENNCNYFAVAYIDEA 62

Query: 69  VKLRLYTP--------------QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
           +K+R                  + +I  L  I P + +   + ++   I +  QL+ Y K
Sbjct: 63  IKIREILKNFEKEKKLKFLENRKIKIMALNYIKPKKLEYAIENDVELTIFNFSQLSDYLK 122

Query: 115 LMS---CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF------NKKLGQLSLIISHLA 165
           ++            ++V++G NRLG +  E L+                 ++  I SH++
Sbjct: 123 ILEESFENTVLKIHIKVNSGMNRLGFNESEILELIEKIKKYEINSKNNKLEIISIFSHIS 182

Query: 166 CADDPSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLG-PNYHFQLTRPGISL 219
            A+  +      Q+E++  ++  +           L +S  +      Y++   R G++L
Sbjct: 183 DAE--NQLETEKQVEKYENILKIFDKNNVKYQYKHLQASPLLFKYEEKYNYDFARVGMAL 240

Query: 220 YGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
           YG    +     +  V+T +++II IR     + +SYG +  + RDS I + +IGYA G 
Sbjct: 241 YGMEP-LFYDVGLLDVITVKSQIINIRNVKKNDKISYGSKGVVKRDSKIGIVSIGYAHGL 299

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339
              +                  + G    I+G+I MDM   D+TD   +E+ D + I G 
Sbjct: 300 QKQIENSQE---------AYVLVNGKKAKIVGEICMDMIFVDLTDINDVEINDKVVIVGS 350

Query: 340 D----------IKLDDVALASGTTNYDLLVRIG 362
                      I L  VA  +GT   D+L +  
Sbjct: 351 QRNVENGVNERITLRQVARWAGTIQDDVLTKFS 383


>gi|260778604|ref|ZP_05887496.1| alanine racemase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604768|gb|EEX31063.1| alanine racemase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 405

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 141/379 (37%), Gaps = 28/379 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                L+I L   K N     + LS   +   V+K +AYG G   + P +    V    +
Sbjct: 40  QSNAWLEISLGQFKQNMALFRSHLSSQTKLCVVMKADAYGNGIRGLMPTILELNVPCIAI 99

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
            S  E   +R    + ++  +      + +   D ++  +I S+ Q      L S   + 
Sbjct: 100 ASNAEARTVRDSGFEGQLVRVRSADIQEIEQAMDLDIEELIGSLEQANQIKSL-STDKTI 158

Query: 123 PYALQV-DTGFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L + D G +R G  +S ++      +    +   +  I++H    D           
Sbjct: 159 KVHLALNDGGMSRNGIDMSTEKGKQEALDIAKHQGIDIVGIMTHFPNYDADEVRSKLADF 218

Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
            +    +     +        +++S   L  P     + RPG  LYG     N  +P  +
Sbjct: 219 NQSSAWLIENANLNRDDVLLHVSNSYTALNVPEAQLDMVRPGGVLYGDLPT-NPEYP--S 275

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +V+ + R+  +    A   V Y       RDS++A   +GY+DGYP  +           
Sbjct: 276 IVSFKTRVASLHNVPANSTVGYDSSYVTKRDSVLANLPVGYSDGYPRKMGNR-------- 327

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
                  + G   P++GK +M+ TM D+TD   +  G  + +FG      I + ++   +
Sbjct: 328 ---AHVIVNGQRAPVVGKTSMNTTMVDVTDVKGVITGQEVTLFGQQANAQISVGEMEEHA 384

Query: 351 GTTNYDLLVRIGTRYAKFY 369
                +L    GT   + Y
Sbjct: 385 ELIFPELYTVWGTANPRLY 403


>gi|119952958|ref|YP_945167.1| alanine racemase [Borrelia turicatae 91E135]
 gi|119861729|gb|AAX17497.1| alanine racemase [Borrelia turicatae 91E135]
          Length = 366

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 159/379 (41%), Gaps = 25/379 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  N+   + I+L  L+ N  ++          A +K +AYG G  +    L   G+  F
Sbjct: 1   MIKNK--EIIINLKNLEYNLTAIKNHIQKRELVATLKADAYGHGLIQTFKFLKEKGINYF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCG 119
            +  ++E +K++    +A + +         K +   ++ P ++    L+   +      
Sbjct: 59  GIFWIDEALKIKKIDKRANVLLYINTDKSAIKNLVKFDITPFVADSQYLSLIEQECRKQN 118

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 L+VD G NR G+ ++ AL+      N KL +   + +HL   +  +  +   Q+
Sbjct: 119 KKIKVHLKVDVGMNRYGIKIENALNLAMQIQNSKLVEFEGVCTHLPTTE--NRKITQAQI 176

Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPM- 232
           E+F   I+  K           ++S  I   P    F + RPG+ LYG     N  +   
Sbjct: 177 EKFVHFINELKTKNIKPKFIHASNSEHITNYPISEKFNMVRPGLILYGYHPNSNSLNNNL 236

Query: 233 --QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             + V++  ++II ++K    E +SY G      D  I +  +GY DG P   S      
Sbjct: 237 QLKPVLSLYSKIIFLKKIKKDEQISYSGLFTAKEDMQIGLLPVGYFDGIPQNTSN----- 291

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                      I+     I GKI M++++ +I   L I +G+ ++I    + LD ++  S
Sbjct: 292 ------NFYCIIRDKKCFIRGKICMNISIIEIPKDLKINIGEKVEITSERLSLDILSKES 345

Query: 351 GTTNYDLLVRIGTRYAKFY 369
           G + Y++L  IG    K Y
Sbjct: 346 GMSKYEILCSIGKHEKKKY 364


>gi|254552529|ref|ZP_05142976.1| alanine racemase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 277

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/276 (26%), Positives = 128/276 (46%), Gaps = 10/276 (3%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E + 
Sbjct: 2   VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 61

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVD 129
           LR     A +                 ++   +SS+ Q       +   G +    ++VD
Sbjct: 62  LRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVD 121

Query: 130 TGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG NR G+   +          +  +   +L  ++SH+  AD P   +N VQ +RF   +
Sbjct: 122 TGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFL 181

Query: 187 SHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEA 240
           +  +  G+    A L++SS  +  P+  F L RPGI++YG +         +   +T + 
Sbjct: 182 AQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKC 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
            + L++   AGE VSYG      RD+ +A+  IGYA
Sbjct: 242 AVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYA 277


>gi|206895841|ref|YP_002247535.1| alanine racemase [Coprothermobacter proteolyticus DSM 5265]
 gi|226711035|sp|B5Y9T8|ALR_COPPD RecName: Full=Alanine racemase
 gi|206738458|gb|ACI17536.1| alanine racemase [Coprothermobacter proteolyticus DSM 5265]
          Length = 348

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/366 (24%), Positives = 150/366 (40%), Gaps = 29/366 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
             ++    LKNN   +     +    AVVKD+AYG     + P L   G+  F V   ++
Sbjct: 5   WAEVSRMNLKNNVELIRQKLPDLEPIAVVKDDAYGHDAAVVVPELLKNGITKFAVVYAKD 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            + L  +  +  I VL    P    +  +     +   +    + S  +   +   + L 
Sbjct: 65  ALMLSEFGAE-WILVLD--DPPLSNMCSEYEKRGIRFCITDSKWLSDGL-LELPIKFHLF 120

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VD G +R G+   E  +           +L  I SHL+     S  + + + ERFR ++S
Sbjct: 121 VDVGMHREGVPWYE-TNTIREICKVVGNRLEGICSHLSNGLSDSQALATEE-ERFREVLS 178

Query: 188 HYK-GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
               G+   L++S+ +      +    RPGISLYG          ++ V++ +AR+I   
Sbjct: 179 IAPEGLMVHLSNSASLYNAKFPYATHFRPGISLYGY-----GYPGLKPVLSLKARVIHEH 233

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               GE +SYG   + T  + +    +GY DGY   LS      S +  L          
Sbjct: 234 ILEPGEGLSYGWTWRATEPTHVVTVPVGYGDGYNRKLSNKAIAGSKAGNLQ--------- 284

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIG 362
              +G +TMD TMF+     ++ VGD I + G         D++A   GT  Y++L  I 
Sbjct: 285 --QIGTVTMDFTMFEAPK--NVTVGDEIVLMGEWEGGHFWADEMAQLVGTIPYEVLTSIN 340

Query: 363 TRYAKF 368
            R  + 
Sbjct: 341 PRVPRV 346


>gi|126641403|ref|YP_001084387.1| alanine racemase [Acinetobacter baumannii ATCC 17978]
          Length = 409

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 144/364 (39%), Gaps = 34/364 (9%)

Query: 7   LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             +++D  A ++N    N L +G  +   V+K NAYG   + + P++    V    +TS 
Sbjct: 26  AWIEVDTQAFEDNIKRTNQLLNGKTQLCVVMKANAYGHSIDLLMPSVMKLNVSCIGITSN 85

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPY 124
            E   +R +  + +I  L      +       N+  ++ +  Q T  SK       +  Y
Sbjct: 86  AEAAMVRKHGYKGKITRLRTATDSEIINAHALNIEELLGNYDQATRISKWAEANNTTVHY 145

Query: 125 ALQVDTG-FNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           +L +++G  +R G  +S  +  +           ++  I++H A            +L +
Sbjct: 146 SLALNSGGMDRNGLEMSTAQGKEQAVAITKLPNLKIDGIMTHYAV---EDEKYVRERLAQ 202

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F    +          K +    A+S   +  P  H  + R G  +YG      +    +
Sbjct: 203 FNEQTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFPNHPE---YK 259

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            ++  + +I  +   L G  V Y     LTRDS +A   +GY+DGY  + S         
Sbjct: 260 RMMAFKTQIAAVNNYLKGSTVGYDQTYTLTRDSKLANLPVGYSDGYRRSFSN-------- 311

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVALA 349
                   + G   P++G+++M+  M D+TD    + GD + +FG     +    D+   
Sbjct: 312 ---KAFVLVNGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGRQGNAEVQSSDLTSL 368

Query: 350 SGTT 353
           +G  
Sbjct: 369 TGHI 372


>gi|237731612|ref|ZP_04562093.1| alanine racemase [Citrobacter sp. 30_2]
 gi|226907151|gb|EEH93069.1| alanine racemase [Citrobacter sp. 30_2]
          Length = 408

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/360 (24%), Positives = 148/360 (41%), Gaps = 34/360 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L+I  +AL+ N H +  L G+  R  A++K +AYG     + P +   GVQ   + S EE
Sbjct: 46  LEISRSALEYNIHKVQQLLGDKTRMCAILKGDAYGHDLSLVTPVMMQNGVQCIGIASNEE 105

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
              +R     +++  +      + +   D +   +I ++      S +    G +    L
Sbjct: 106 ISTVRQSGYTSQLMRVRNATEKEMRQAADFDTEELIGNLDMAKRLSAIAQEKGKTIRIHL 165

Query: 127 QVDTG-FNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            +++G  +R GL +  A  L+           ++  I+SH     +  + V    L RF 
Sbjct: 166 ALNSGGMSRNGLEVSTAAGLEEARAISALPGLKIVGIMSHFP---EEDAAVVKRDLARFN 222

Query: 184 TLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
           T  +          + +   +A++   L  P     + R G   YG T     S   + V
Sbjct: 223 TQSAQVLKITGLKREDVTLHVANTFATLTVPESWLDMVRVGGIFYGDTI---GSTEYKRV 279

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T ++ I  +     G  V Y     L RDS++A    GYADGY    S           
Sbjct: 280 MTFKSAIASVNHYPKGNTVGYDRTYTLKRDSVLANIPTGYADGYRRVFSN---------- 329

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
             G   I+G  VP+LGK +M+  + D+TD   +  GD + +FG      +  ++V   SG
Sbjct: 330 -AGHVLIRGQRVPVLGKTSMNTVIVDVTDLPQVASGDEVVLFGKQGNAQVSAEEVEEISG 388


>gi|291562623|emb|CBL41439.1| alanine racemase [butyrate-producing bacterium SS3/4]
          Length = 403

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/390 (22%), Positives = 145/390 (37%), Gaps = 43/390 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPAL-YNAGVQDFFVTSVE 66
           RL+I+L+ +  N   + A +G      VVK NAYG G   +A  L    G++   V  + 
Sbjct: 9   RLEINLSRIGRNIDKIRAYTGGLGLIPVVKSNAYGYGTAAVANFLVRRCGIRFLAVARLF 68

Query: 67  EGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123
           E  +++    P   I +L  +   Q   I    +   +  V      S+        S  
Sbjct: 69  EACQIQDSGCPDCGILILGPVPAFQIPTIVKRKIEIPLFRVEDAKRLSEEAKKQGLASVK 128

Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSVQ 178
             ++++TG NR+G    +E  D           ++  + +H A AD  +    +     Q
Sbjct: 129 AHIKIETGMNRIGARPGKELSDLLSCIKGLGNIEIDGVFTHFATADQANEGKGNDFTREQ 188

Query: 179 LERFRTLISHYK--GIEA---SLASSSGILLGPN-YHFQLTRPGISLYGGTDKINKSH-- 230
             RF   +S  +  GI        ++         Y         SLY G   I      
Sbjct: 189 FSRFLEGLSQIREAGITPRYVHCCNTGATAWLKEAYSVCTHVRTGSLYLGYSSIQNDWNP 248

Query: 231 -PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             ++   + +  I+ IR+ + GE V YG        + +AV  IGY DGY  +       
Sbjct: 249 IGVEESGSWKTMIVNIREIVPGESVGYGRTFMPDHPAKVAVIGIGYGDGYTRSF------ 302

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLD 344
                  G    I G     +G   MDM+  D+TD    ++GD + +FG D     I   
Sbjct: 303 ----AVSGAPALINGVRCRFVGT-CMDMSFLDVTDV-DCKIGDEVTLFGEDGKGNRISGL 356

Query: 345 DVALASGTTNYD----LLVRIGTRYAKFYT 370
           ++    G    +    +   I  R A+ Y+
Sbjct: 357 EIGHLMG----ETRLAMFSHITERAARTYS 382


>gi|108763995|ref|YP_635273.1| alanine racemase [Myxococcus xanthus DK 1622]
 gi|108467875|gb|ABF93060.1| alanine racemase [Myxococcus xanthus DK 1622]
          Length = 409

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 169/394 (42%), Gaps = 47/394 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGN--ARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            L++  +AL++N     AL G    R   VV K NAYG G  ++ P   +  V   +V +
Sbjct: 25  WLELSASALRHNVAVFRALEGQGAPRALGVVLKGNAYGHGLAQVLPV-VHGEVDLLYVIA 83

Query: 65  VEEGVKLRL------YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
            ++ +K+R         P+  + VL  + P +  ++    +  V++        + L + 
Sbjct: 84  PQDALKVREYERAQGLGPRQ-VLVLGAVAPDEAVVLAREGVDAVVADRGWADAAAVLRAA 142

Query: 119 GVSHP--YALQVDTGFNRLGLSLQEALDFTH-NSFNKKLGQLSLIISHLACADD-PSSHV 174
            +  P    + +DTG  R G +L+     +   S ++ + ++  ++SH A  +D      
Sbjct: 143 KLERPLRVHVHLDTGLGREGFTLEGLPTESRFLSESRDVLEVVGVLSHFANTEDVTEQGY 202

Query: 175 NSVQLERFRTLISHY-------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
              Q++ F   ++         + ++  +A+S+  L+ P   ++  R GISLYG      
Sbjct: 203 ALAQVDAFEKGLAFLSEQLAPARPLQRHIAASAATLVLPRARYEALRVGISLYGLWPSPE 262

Query: 228 ----------KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
                     +   ++ V++   R  +++   AG  V YG   +    + IAV  +GY D
Sbjct: 263 TRLSARLVLGEVPVLKPVLSWRCRSQVVKWLSAGSYVGYGCTYRCPEPTRIAVLPVGYYD 322

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           GYP  +SG                + G   P+LG++ M+  + D+T + S E      + 
Sbjct: 323 GYPRLVSG-----------KAHVLVNGRRCPVLGRVMMNHLIVDVTRATSDERPVTATLM 371

Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAK 367
           G D    +  + +A  + T +Y+L+ R+G    +
Sbjct: 372 GRDGEESVPAESLAGWAQTIHYELVTRLGAHLKR 405


>gi|319779710|ref|YP_004130623.1| Alanine racemase [Taylorella equigenitalis MCE9]
 gi|317109734|gb|ADU92480.1| Alanine racemase [Taylorella equigenitalis MCE9]
          Length = 412

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 43/387 (11%)

Query: 4   NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    +++D+ A +NN   +  L +G ++  A++K +AYG G   + P++    V    +
Sbjct: 40  SANAWIEVDVQAFENNIAELQKLLNGKSKVCAILKADAYGHGINLLMPSIIKMNVPCIGI 99

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121
            S EE    R +  +  I  +      + K     ++  ++  V Q    + L    G  
Sbjct: 100 ASNEEARIARAHNYEGTIMRVRAASINEIKDGLKYDMEELVGDVTQAQTINALAKEAGKD 159

Query: 122 HPYALQVDT-GFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               + +++ G +R G  +S                 ++  I++H     + +  +    
Sbjct: 160 VRIHISLNSAGMDRNGIDMSTDNGRAEALELTKFSNLKVVGIMTHYP---EENEEIIRKD 216

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           L RF                 I    A+S   L  P  HF + RPG  LYG  D I    
Sbjct: 217 LVRFNEDSKWLIENAGLNRNQIVIHTANSYTTLTVPEAHFDMVRPGGLLYG--DSIPTRT 274

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             + +++ ++R+  I     G  V Y    KL RDS++A    GY+DGY    S      
Sbjct: 275 EYKRILSFKSRVANINHYPKGSTVGYDRTFKLERDSMLANLPFGYSDGYRRIFSN----- 329

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-------PDIKL 343
                  G   I G+ VP++G+++M+ TM D+TD   I  G  + IFG           +
Sbjct: 330 ------KGYVLINGHKVPVVGRVSMNTTMVDVTDFPDILEGAEVVIFGTQGDAKVEQADI 383

Query: 344 DDV--ALASGTTNYDLLVRIGTRYAKF 368
           +++  AL +      L    G    + 
Sbjct: 384 EEINGALLAD-----LYTVWGNSNPRI 405


>gi|226327902|ref|ZP_03803420.1| hypothetical protein PROPEN_01783 [Proteus penneri ATCC 35198]
 gi|225203606|gb|EEG85960.1| hypothetical protein PROPEN_01783 [Proteus penneri ATCC 35198]
          Length = 407

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/361 (23%), Positives = 145/361 (40%), Gaps = 34/361 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            ++I  +AL  N   + +L G+ +   AV+K +AYG     +AP +    VQ   VT+ +
Sbjct: 44  WIEISRSALDFNVKKVQSLLGDKSSLCAVLKGDAYGHDLSLVAPVMIENNVQCIGVTNNQ 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125
           E  ++R    Q R+  +      +       N+  +I ++        +        P  
Sbjct: 104 ELKEVRDLGFQGRLMRVRNATEQEMAQATSYNVEELIGNLDMAKKLDAIAKQQNKVIPIH 163

Query: 126 LQVDTG-FNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L +++G  +R GL +     L+           ++  I+SH     +  +      L RF
Sbjct: 164 LALNSGGMSRNGLEVNNKAGLEEAKQIAQLANLKVVGIMSHYP---EEDADKVREDLARF 220

Query: 183 RTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +              K +   +A++   +  P     + R G   YG T     S   + 
Sbjct: 221 KQQSQKVLDVTGLNPKEVTLHMANTFATITVPGSWLDMVRVGGIFYGDTI---ASTDYKR 277

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  I     G  V Y     L RDS++A   +GYADGY    S          
Sbjct: 278 VMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN--------- 328

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   I G  VP+LGK +M+  + DITD  +I+ GD +  FG     +I  +++   S
Sbjct: 329 --AGHALIGGQRVPVLGKTSMNTVIVDITDLKNIKSGDEVVFFGKQGNAEITAEEIEDIS 386

Query: 351 G 351
           G
Sbjct: 387 G 387


>gi|326442666|ref|ZP_08217400.1| alanine racemase [Streptomyces clavuligerus ATCC 27064]
          Length = 330

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 132/348 (37%), Gaps = 35/348 (10%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +   A   AVVK NAYG G   +A A   AG +   V ++ EG+ LR   P+ARI VL  
Sbjct: 1   MVDGAELWAVVKGNAYGHGAVPVAGAALEAGARALCVATLGEGLALRERFPRARIVVLGP 60

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
           + PG         L  V      L   S  +       Y ++V+ G NR G       D 
Sbjct: 61  VGPGSVPAASRAGLECVAHDDASLEALSGAVE------YHIKVNLGLNRYGF------DR 108

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG 205
             +   ++   +    SH          V ++QL RF             + +SS  L  
Sbjct: 109 IPDRLREQPVGVFGQFSH----AHVDLEVTALQLARFLEQCEAVPRATRHVCNSSAALSL 164

Query: 206 PNYHFQLTRPGISLYGGTDKINKSH--PMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
           P       R G +L G +   N S   P++  ++  + +  +R   AG  V Y G  ++T
Sbjct: 165 PAARLDAVRSGSALLGVSLMTNPSSRLPLRPALSWISCLAQVRNLPAGAAVGYEGAHRVT 224

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
           R ++  V  +GY DG+             S  +G    +      ++G ++MD     + 
Sbjct: 225 RPTVTGVVPVGYGDGF------------VSRLVGTTVLVGDEPATVIGSVSMDALTVALP 272

Query: 324 DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT---RYAKF 368
                 +G  + + G  + ++     +   N++L   +     R  + 
Sbjct: 273 RRFP--IGTPVTLIGDGLPMESHLRFASMANWELCTGLSNDPLRVHRR 318


>gi|325121779|gb|ADY81302.1| alanine racemase [Acinetobacter calcoaceticus PHEA-2]
          Length = 430

 Score =  259 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 142/364 (39%), Gaps = 34/364 (9%)

Query: 7   LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             ++ID  A ++N    N L +G  +   V+K NAYG   + + P++    V    +TS 
Sbjct: 47  AWIEIDTQAFEDNIKRTNQLLNGKTQLCIVMKANAYGHSIDLLMPSVMKLNVSCIGITSN 106

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPY 124
            E   +R +  + +I  L      +       N+  ++ +  Q    SK       +  Y
Sbjct: 107 AEAAMVRKHGYKGKITRLRTATDSEIINAQALNIEELLGNYDQAARMSKWAEANNTTVHY 166

Query: 125 ALQVDTG-FNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           +L +++G  +R GL +  AL  +           ++  I++H A            +L +
Sbjct: 167 SLALNSGGMDRNGLEMSTALGKEQAVAITKLPHLKIDGIMTHYAV---EDEKFVRERLAQ 223

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F    +          K +    A+S   +  P  H  + R G  +YG      +    +
Sbjct: 224 FNEQTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFPNHPE---FK 280

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            ++  + +I  +   L    V Y     L RDS +A   +GY+DGY  + S         
Sbjct: 281 GMMAFKTQIAAVNNYLKDSTVGYDQTYTLKRDSKLANLPVGYSDGYRRSFSN-------- 332

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVALA 349
                   I G   P++G+++M+  M D+TD    + GD + +FG     +    D+   
Sbjct: 333 ---KAFVLINGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGRQGNAEVKTSDLTSL 389

Query: 350 SGTT 353
           +G  
Sbjct: 390 TGHI 393


>gi|197285632|ref|YP_002151504.1| alanine racemase [Proteus mirabilis HI4320]
 gi|194683119|emb|CAR43692.1| putative alanine racemase [Proteus mirabilis HI4320]
          Length = 407

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/361 (23%), Positives = 144/361 (39%), Gaps = 34/361 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            ++I  +AL  N   + +L G  +   AV+K +AYG     +AP +    VQ   VT+ +
Sbjct: 44  WIEISRSALDFNVKKVQSLLGKQSSLCAVLKGDAYGHDLSLVAPIMIENNVQCIGVTNNQ 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           E  ++R    + R+  +      +     + N+  +I  +        +        P  
Sbjct: 104 ELKEVRDLGFKGRLMRVRNATEQEMAQATNYNVEELIGDLDMAKRLDAIAKQQNKVIPIH 163

Query: 126 LQVDT-GFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L +++ G +R GL +     L+           ++  I+SH     +   +     L RF
Sbjct: 164 LALNSGGMSRNGLEVDNKSGLEKAKQISQLANLKVVGIMSHYP---EEDVNKVREDLARF 220

Query: 183 RTLIS---HYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +          G+E       +A++   +  P     + R G   YG T     S   + 
Sbjct: 221 KQQSQKVLEVMGLERNNVTLHMANTFATITVPESWLDMVRVGGIFYGDTI---ASTDYKR 277

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  I     G  V Y     L RDS++A   +GYADGY    S          
Sbjct: 278 VMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN--------- 328

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   I G  VP+LGK +M+  M DIT   +I+ GD +  FG     +I  +++   S
Sbjct: 329 --AGHALIAGQRVPVLGKTSMNTVMVDITSLNNIKPGDEVVFFGKQGNSEITAEEIEDIS 386

Query: 351 G 351
           G
Sbjct: 387 G 387


>gi|227356137|ref|ZP_03840526.1| alanine racemase [Proteus mirabilis ATCC 29906]
 gi|227163601|gb|EEI48517.1| alanine racemase [Proteus mirabilis ATCC 29906]
          Length = 407

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/361 (22%), Positives = 143/361 (39%), Gaps = 34/361 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            ++I  +AL  N   + +L G  +   AV+K +AYG     +AP +    V+   VT+ +
Sbjct: 44  WIEISRSALDFNVKKVQSLLGKQSSLCAVLKGDAYGHDLSLVAPIMIENNVKCIGVTNNQ 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125
           E  ++R    + R+  +      +     + N+  +I  +        +        P  
Sbjct: 104 ELKEVRDLGFKGRLMRVRNATEQEMAQATNYNVEELIGDLDMAKRLDAIAKQQNKVIPIH 163

Query: 126 LQVDT-GFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L +++ G +R GL +     L+           ++  I+SH     +  ++     L RF
Sbjct: 164 LALNSGGMSRNGLEVDNKSGLEKAKQISQLANLKVVGIMSHYP---EEDANKVREDLARF 220

Query: 183 RTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +                +   +A++   +  P     + R G   YG T     S   + 
Sbjct: 221 KQQSQQVLEVMGLERNNVTLHMANTFATITVPESWLDMVRVGGIFYGDTI---ASTDYKR 277

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  I     G  V Y     L RDS++A   +GYADGY    S          
Sbjct: 278 VMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN--------- 328

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   I G  VP+LGK +M+  + DIT   +I+ GD +  FG     +I  +++   S
Sbjct: 329 --AGHALIAGQRVPVLGKTSMNTVIVDITSLNNIKPGDEVVFFGKQGNSEITAEEIEDIS 386

Query: 351 G 351
           G
Sbjct: 387 G 387


>gi|293608485|ref|ZP_06690788.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829058|gb|EFF87420.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 430

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 142/364 (39%), Gaps = 34/364 (9%)

Query: 7   LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             ++ID  A ++N    N L +G  +   V+K NAYG   + + P++    V    +TS 
Sbjct: 47  AWIEIDTQAFEDNIKRTNQLLNGKTQLCIVMKANAYGHSIDLLMPSVMKLNVSCIGITSN 106

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPY 124
            E   +R +  + +I  L      +       N+  ++ +  Q    SK       +  Y
Sbjct: 107 AEAAMVRKHGYKGKITRLRTATDSEIINAQALNIEELLGNYDQAARMSKWAEANNTTVHY 166

Query: 125 ALQVDTG-FNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           +L +++G  +R GL +  AL  +           ++  I++H A            +L +
Sbjct: 167 SLALNSGGMDRNGLEMATALGKEQAVAITKLPHLKIDGIMTHYAV---EDEKFVRERLAQ 223

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F    +          K +    A+S   +  P  H  + R G  +YG      +    +
Sbjct: 224 FNEQTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFPNHPE---FK 280

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            ++  + +I  +   L    V Y     L RDS +A   +GY+DGY  + S         
Sbjct: 281 GMMAFKTQIAAVNNYLKDSTVGYDQTYTLKRDSRLANLPVGYSDGYRRSFSN-------- 332

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVALA 349
                   I G   P++G+++M+  M D+TD    + GD + +FG     +    D+   
Sbjct: 333 ---KAFVLINGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGHQGNAEVKTSDLTSL 389

Query: 350 SGTT 353
           +G  
Sbjct: 390 TGHI 393


>gi|311745246|ref|ZP_07719031.1| alanine racemase [Algoriphagus sp. PR1]
 gi|126577772|gb|EAZ81992.1| alanine racemase [Algoriphagus sp. PR1]
          Length = 385

 Score =  258 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 158/386 (40%), Gaps = 37/386 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           R+++  ++L  N + +    G   R ++VVK NAYG G  +       AGV  F   S  
Sbjct: 7   RIELSQSSLTTNINFIKKKIGKGVRISSVVKANAYGHGITEFVKMAEKAGVSHFATASAF 66

Query: 67  EGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           E  ++     + + + ++  ++        +  +   + +  +           G     
Sbjct: 67  EAEEVMDAKSENSEVMIMGILYDEDIDWAVENGIEFYVFNYARLPLVLKSAQKLGKKAKV 126

Query: 125 ALQVDTGFNRLGLSLQEALDFTH-NSFNKKLGQLSLIISHLACADDPSSHVN-SVQLERF 182
            ++V+TG NR GL+ +E L   +    + +      + +H   A++ S+    + Q +R+
Sbjct: 127 HIEVETGANRTGLTDKEFLPTLNFLKKHSEDIIFKGLCTHFGGAENISNQFKINKQHDRY 186

Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---------- 227
           +  +   K          +A S+  L   +  + + R G++ YG     +          
Sbjct: 187 KNFLKKCKQKGMMPEVRHIACSAAALAYKDTVYDMVRIGVAQYGFWPSPDIYYMHLQEIG 246

Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                 ++ + T +  ++ IR    GE + YG   +  +D  +AV  +GY++GYP   S 
Sbjct: 247 KQSDGALKRIFTWKTDVMDIRDVDEGEFIGYGTSFQAVQDMKVAVMPLGYSNGYPRAQSN 306

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341
                       G   IKG  VPI+G I M++ M D+T+   +E+G+ + + G      I
Sbjct: 307 R-----------GHVLIKGKKVPIVGLINMNLFMVDVTNIPGVELGEEVVLVGRQKNNTI 355

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367
            +      +   N ++L R+ +   +
Sbjct: 356 NISSFTQVTQLLNNEMLSRLPSAIPR 381


>gi|323342193|ref|ZP_08082425.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463305|gb|EFY08499.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 356

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 158/372 (42%), Gaps = 30/372 (8%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   E +   I+L  L  N + +  ++G +    VVK NAYG G  + +  +    +   
Sbjct: 1   MDGRETI-ATINLDNLSYNINKIQEVTGKS-LFGVVKANAYGHGDVECSRIMIEENLPFI 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V+S++E  +L        I +   + P   KII +      I ++P + ++ ++ +  +
Sbjct: 59  CVSSIDEAQRLVHKGINYDILIFSYVDP---KIIAEQGKEHFIYTIPSIQWFREVTALNL 115

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +    L+++ G NR+G+   + ++            L  I +HL   ++        QL 
Sbjct: 116 NLRMHLEINVGMNRIGIKNDKEIEEI----LSSDVPLEGIYTHLPSPENLEKG--KEQLT 169

Query: 181 RFRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
           RF  +I+  +       + ++   L+  N      R G+++YG    I     ++ V++ 
Sbjct: 170 RFENIINASERNFKWIHVGNAPVSLIKDNTLINGFRMGLAVYGYRVDIPS---LKPVLSL 226

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ++I  I +   GE + Y     + +        IGYAD +       D  ++       
Sbjct: 227 HSKICHIDRVNPGESIGYDYTYLVEKKEYFGTMPIGYADCF-------DVRNNLV----- 274

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
             +IKG    I+GKI MD TM  I +  S+ +GD +++ GP     ++   +G + Y  L
Sbjct: 275 PVYIKGKPYSIVGKICMDQTMIRIDE--SVYLGDEVELIGPHRTCVEIESITGISKYIQL 332

Query: 359 VRIGTRYAKFYT 370
             +  R  + YT
Sbjct: 333 STLSERITRHYT 344


>gi|262368964|ref|ZP_06062293.1| alanine racemase [Acinetobacter johnsonii SH046]
 gi|262316642|gb|EEY97680.1| alanine racemase [Acinetobacter johnsonii SH046]
          Length = 408

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/350 (23%), Positives = 139/350 (39%), Gaps = 29/350 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
                ++I++   + N  ++   L   ++  AV+K +AYG G E + P++    V    +
Sbjct: 40  QANAWVEINVQTFEQNIQTLQQQLQDKSQFCAVMKADAYGHGIELLMPSIIKLNVPCVGI 99

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
           TS  E   +R    Q R+  L      + +     N+  ++ +  Q    S+     G+ 
Sbjct: 100 TSNAEAALVRKSGYQGRLLRLRAATDQEIQNAASLNMEELLGNYEQAQRLSEWAKQQGLI 159

Query: 122 HPYALQVDT-GFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQ 178
             Y L ++  G +R GL L  AL              +L  I++H A            +
Sbjct: 160 LEYHLGLNAGGMDRNGLELNSALGKQQALRMTKLPNLKLVGIMTHYAV---EDEKYVRER 216

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           L  F               + +    A+S   L  P  H  + R G  +YG  D +    
Sbjct: 217 LAVFNQQTDWIIKKAKLKREALTLHTANSFATLTVPESHLDMVRAGGVIYG--DSLPDRV 274

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             + ++T + ++  +   L G  V Y     L RDSL+A   +GY+DGY    S      
Sbjct: 275 EYKKLMTFKTQVATVNAYLKGTTVGYDQTYTLKRDSLLANLPLGYSDGYRRAFSN----- 329

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340
                      I+G+ VP++G+ +M+ TM DITD   I   D + +FG  
Sbjct: 330 ------KAYVLIRGHKVPVVGRTSMNTTMVDITDFPDIRANDEVVLFGEQ 373


>gi|86138387|ref|ZP_01056961.1| alanine racemase [Roseobacter sp. MED193]
 gi|85824912|gb|EAQ45113.1| alanine racemase [Roseobacter sp. MED193]
          Length = 382

 Score =  256 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 147/380 (38%), Gaps = 33/380 (8%)

Query: 4   NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           NE    +I    +  N   +++ L    R  AV+K +AYG G E + PAL   GV+   +
Sbjct: 6   NESAWCEISPAQISQNLRHTLDRLPAQTRLCAVIKADAYGHGIENVVPALLAQGVRHIGI 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++  E   +R       I  L    P + +     N+  +I SV  +      +      
Sbjct: 66  SANSEARAVRAAGFTGAILRLRTATPEEVEDALSYNVQELIGSVGGMQAILNQLGARGLP 125

Query: 123 PYALQVDT-GFNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           P  L ++  G +R G+ L  Q+              ++  + +H           N   +
Sbjct: 126 PVHLSLNAGGMSRDGVELSTQQGRTDCGRILELGAERIVGLCTHFPSNSFDELADN---I 182

Query: 180 ERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            RF+  ++          + I     S+  +  G +    + R G  L+G          
Sbjct: 183 ARFQQDLAWVFANSSLRREDILTHAGSTLTLAAGQDPKVDMMRCGAILFGI---AGAGPE 239

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            +  +  ++R+I +     G  V Y     L  D L+A  A+GYA+GY   +S       
Sbjct: 240 FRPAMQLKSRVISLGTYPKGSTVGYDRTCVLPDDRLLASVAMGYANGYSRQMS------- 292

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA-- 349
                G +  I+G + P++G I+M+  + D+T+   + +GD +  FG     +  A A  
Sbjct: 293 ----KGAQVLIRGQICPVMGAISMNTLVVDVTEVPGVAIGDEVVAFGSQGGCEIGAAAIE 348

Query: 350 --SGTTNYDLLVRIGTRYAK 367
             SGT   DL    G R  +
Sbjct: 349 GGSGTILADLFSDWGQRNPR 368


>gi|153837983|ref|ZP_01990650.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
 gi|149748591|gb|EDM59450.1| alanine racemase [Vibrio parahaemolyticus AQ3810]
          Length = 404

 Score =  256 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 152/380 (40%), Gaps = 34/380 (8%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+ID  A  NN   +   L GN +  A++K +AYG G   + P++    V    +TS 
Sbjct: 41  AWLEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSN 100

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           EE   +R +  + +I  +      + +      +  +I +  Q     ++  +     P 
Sbjct: 101 EEARVVREHGFKGKIMRVRAASRNEIENGVQYEIEELIGTKMQADQIIEIAYNYNTVIPV 160

Query: 125 ALQVDT-GFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L ++T G  R GL L             +    ++  +++H              +++R
Sbjct: 161 HLALNTSGMGRNGLDLTTYEGQVEGVEIASDPNLKIVGMMTHFPN---EGLDEIRRKVDR 217

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F+              K I   +A+S   L  P  H  + RPG  LYG       + P +
Sbjct: 218 FKVETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYGDYP---ATLPYE 274

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +V+ + R+  +    AG  + YG  K L RDS++A   IGY+DG+  +LS         
Sbjct: 275 RIVSFKTRVASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN-------- 326

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I G    ++GK +M+ TM D+TD + ++  D + +FG      I  ++    
Sbjct: 327 ---KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFGRQGFEEITAEETEEK 383

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           SG    +     G    + Y
Sbjct: 384 SGRILPEHYTIWGATNPRVY 403


>gi|203287620|ref|YP_002222635.1| alanine racemase [Borrelia recurrentis A1]
 gi|201084840|gb|ACH94414.1| alanine racemase [Borrelia recurrentis A1]
          Length = 370

 Score =  256 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 158/372 (42%), Gaps = 24/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+   L++N  ++ +        A +K +AYG G  +         +  F + S+ + 
Sbjct: 10  IIINFKNLEHNLITIKSHVHKKELVATLKADAYGHGLIQTFKFFKEKNINYFGLFSIYDA 69

Query: 69  VKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           +KLR    ++ I +    I+    K + +  + P ++    L+   +            L
Sbjct: 70  LKLRKIDKKSNILLYINNINKNAIKNLVNFEITPFVADSQYLSLIEEECKRQNKKIKVHL 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VD G NR G+  + AL+      + KL +   I +HL   +  ++ +   Q ++F  LI
Sbjct: 130 KVDVGMNRYGIKTENALNLATKIQDSKLVEFEGICTHLPTTE--NTKITQTQSKKFDYLI 187

Query: 187 SHYKGIE-----ASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           +  K          +++S  I       +F + RPG+ LYG     N  +     + V+ 
Sbjct: 188 NELKNKNINPKFIHISNSGHITNYKISENFNMIRPGLILYGYHPNPNNQNNNLKLKPVLN 247

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +++I ++    G+ +SY G  K   D  I +  +GY DG P   S             
Sbjct: 248 LYSKVIFVKNIKKGDQISYSGLFKAKEDMQIGLIPVGYFDGIPQNTS-----------KN 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               IK     I GKI M++++ +I   L I +GD ++I    + LD ++  SG + Y+L
Sbjct: 297 FYCIIKDKKCFIRGKICMNISIIEIPQDLKINIGDKVEIVSERLSLDILSKESGRSTYEL 356

Query: 358 LVRIGTRYAKFY 369
           L  IG    K Y
Sbjct: 357 LCSIGKNEKKKY 368


>gi|223670745|dbj|BAH22617.1| alanine racemase [Marsupenaeus japonicus]
          Length = 421

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 149/380 (39%), Gaps = 31/380 (8%)

Query: 9   LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + ++L A+  N   +  LS        VVK  AYG G   +   L   GV++  V +V E
Sbjct: 39  IHVNLDAVALNVDILKGLSSPKTEIMGVVKGGAYGSGLLPVVEVLLEKGVRELAVATVAE 98

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSK--LMSCGVSHPY 124
           G+ LR +     I +L  + P +   +   NLIP +S S   ++   +  +   G     
Sbjct: 99  GLYLRRHGINVPITILGNLVPCEVSDVTQHNLIPSLSWSQALMSVPRESLVYPDGSRLKV 158

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           A+ +DTG +R G+  ++      +  + ++  LS + +H   A       N  QL+ F +
Sbjct: 159 AINIDTGMSRYGVQPEDLPALVQDLDDLEVTILS-MYTHFQSAI-TEREKNQKQLDLFLS 216

Query: 185 LISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------HPMQTV 235
               YK  GI   +A+++G + G        RPG ++ G     +K           Q  
Sbjct: 217 ASEPYKCRGITRHVAATTGCVQGLGTDLDFIRPGGAITGLCSGSDKEGTNQFAKKRFQPA 276

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
            +  AR    +   AG  V Y G    + D  IA  + G++DG    LS           
Sbjct: 277 FSVIARPTFYKLLGAGRHVGYDGTYTTSEDEWIANFSTGWSDGLSRRLSNGVGAVRRIST 336

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI--QI---FGPDIKLDDVALAS 350
                   G   PI+G+++MD     + +     + D +   +   +        +A   
Sbjct: 337 --------GERCPIVGRVSMDSITVRLPEQP---LPDEVFQVLTDDYDEVTSAVGMARNL 385

Query: 351 GTTNYDLLVRIGTRYAKFYT 370
           G   Y++     TR  + YT
Sbjct: 386 GGATYEIPGNWSTRLPRLYT 405


>gi|260364032|ref|ZP_05776760.1| alanine racemase [Vibrio parahaemolyticus K5030]
 gi|260876638|ref|ZP_05888993.1| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|260898078|ref|ZP_05906574.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|260902333|ref|ZP_05910728.1| alanine racemase [Vibrio parahaemolyticus AQ4037]
 gi|308085806|gb|EFO35501.1| alanine racemase [Vibrio parahaemolyticus Peru-466]
 gi|308093954|gb|EFO43649.1| alanine racemase [Vibrio parahaemolyticus AN-5034]
 gi|308110937|gb|EFO48477.1| alanine racemase [Vibrio parahaemolyticus AQ4037]
 gi|308114571|gb|EFO52111.1| alanine racemase [Vibrio parahaemolyticus K5030]
          Length = 404

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 152/380 (40%), Gaps = 34/380 (8%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+ID  A  NN   +   L GN +  A++K +AYG G   + P++    V    +TS 
Sbjct: 41  AWLEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSN 100

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           EE   +R +  + +I  +      + +      +  +I +  Q     ++  +     P 
Sbjct: 101 EEARVVREHGFEGKIMRVRAASRNEIENGVQYEIEELIGTKMQADQIIEIAYNYNTVIPV 160

Query: 125 ALQVDT-GFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L ++T G  R GL L             +    ++  +++H              +++R
Sbjct: 161 HLALNTSGMGRNGLDLTTYEGQVEGVEIASDPNLKIVGMMTHFPN---EGLDEIRRKVDR 217

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F+              K I   +A+S   L  P  H  + RPG  LYG       + P +
Sbjct: 218 FKVETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYGDYP---ATLPYE 274

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +V+ + RI  +    AG  + YG  K L RDS++A   IGY+DG+  +LS         
Sbjct: 275 RIVSFKTRIASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN-------- 326

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I G    ++GK +M+ TM D+TD + ++  D + +FG      I  ++    
Sbjct: 327 ---KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFGRQGFEEITAEETEEK 383

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           SG    +     G    + Y
Sbjct: 384 SGRILPEHYTIWGATNPRVY 403


>gi|28899622|ref|NP_799227.1| alanine racemase [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807874|dbj|BAC61111.1| putative alanine racemase [Vibrio parahaemolyticus RIMD 2210633]
          Length = 392

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 152/380 (40%), Gaps = 34/380 (8%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+ID  A  NN   +   L GN +  A++K +AYG G   + P++    V    +TS 
Sbjct: 29  AWLEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSN 88

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           EE   +R +  + +I  +      + +      +  +I +  Q     ++  +     P 
Sbjct: 89  EEARVVREHGFEGKIMRVRAASRNEIENGVQYEIEELIGTKMQADQIIEIAYNYNTVIPV 148

Query: 125 ALQVDT-GFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L ++T G  R GL L             +    ++  +++H              +++R
Sbjct: 149 HLALNTSGMGRNGLDLTTYEGQVEGVEIASDPNLKIVGMMTHFPN---EGLDEIRRKVDR 205

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F+              K I   +A+S   L  P  H  + RPG  LYG       + P +
Sbjct: 206 FKVETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYGDYP---ATLPYE 262

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +V+ + RI  +    AG  + YG  K L RDS++A   IGY+DG+  +LS         
Sbjct: 263 RIVSFKTRIASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN-------- 314

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I G    ++GK +M+ TM D+TD + ++  D + +FG      I  ++    
Sbjct: 315 ---KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFGRQGFEEITAEETEEK 371

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           SG    +     G    + Y
Sbjct: 372 SGRILPEHYTIWGATNPRVY 391


>gi|183599355|ref|ZP_02960848.1| hypothetical protein PROSTU_02822 [Providencia stuartii ATCC 25827]
 gi|188021591|gb|EDU59631.1| hypothetical protein PROSTU_02822 [Providencia stuartii ATCC 25827]
          Length = 407

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/361 (21%), Positives = 143/361 (39%), Gaps = 34/361 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            ++I  +AL  N   + AL G+ +   AV+K +AYG     + P +    VQ   +T+ +
Sbjct: 44  WIEISRSALDFNIKKVQALLGDKSSLCAVLKGDAYGHDLTLVTPLMIENNVQCIGLTNNQ 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           E  ++R    + R+  +      +       ++  +I ++      + +        P  
Sbjct: 104 EFKQVRELGFKGRLMRVRNATEQEMAQATAYDVEELIGNLDMAQRLNDIGKKQNKVIPIH 163

Query: 126 LQVDT-GFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L +++ G +R G  +S  + L+           ++  I+SH     +         L +F
Sbjct: 164 LALNSAGMSRNGLEVSHAQGLNDAKMIAQLPQLKVVGIMSHYP---EEDEAQIRKDLAKF 220

Query: 183 RTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +              + +   +A++   +  P     + R G   YG       +   + 
Sbjct: 221 KKQSQQVLDVTGLKREDVILHVANTYATITVPESWLDMVRVGGIFYG---DTVATKDYKR 277

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  +     G  V Y     L RDS++A   +GYADGY    S          
Sbjct: 278 VMTLKSNIASVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN--------- 328

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   I G  VP+LGK +M+  M D+TD   ++ GD +  FG     +I  ++V   S
Sbjct: 329 --AGHALINGQTVPVLGKTSMNTVMVDVTDLKQVQPGDEVVFFGKQGNGEITAEEVEDIS 386

Query: 351 G 351
           G
Sbjct: 387 G 387


>gi|203284081|ref|YP_002221821.1| alanine racemase [Borrelia duttonii Ly]
 gi|201083524|gb|ACH93115.1| alanine racemase [Borrelia duttonii Ly]
          Length = 370

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 157/372 (42%), Gaps = 24/372 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+   L++N  ++ +        A +K +AYG G  +         +  F + S+ + 
Sbjct: 10  IIINFKNLEHNLITIKSHVHKKELVATLKADAYGHGLIQTFKFFKEKNINYFGLFSIYDA 69

Query: 69  VKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           +KLR    ++ I +    I+    K + +  + P ++    L+   +            L
Sbjct: 70  LKLRKIDKKSNILLYINNINKNAIKNLVNFEITPFVADSQYLSLIEEECKRQNKKIKVHL 129

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +VD G NR G+  + AL+      + KL +   I +HL   +  ++ +   Q ++F  LI
Sbjct: 130 KVDVGMNRYGIKTENALNLATKIQDSKLVEFEGICTHLPTTE--NTKITQTQSKKFDYLI 187

Query: 187 SHYKGIE-----ASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPM---QTVVT 237
           +  K          +++S  I        F + RPG+ LYG     N  +     + V+ 
Sbjct: 188 NELKNKNINPKFIHISNSGHITNYKISEKFNMIRPGLILYGYHPNPNNQNNNLKLKPVLN 247

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             +++I I+    G+ +SY G  K   D  I +  +GY DG P   S             
Sbjct: 248 LYSKVIFIKNIKKGDQISYSGLFKAKEDMQIGLIPVGYFDGIPQNTS-----------KN 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               IK     I GKI M++++ +I   L I +GD ++I    + LD ++  SG + Y+L
Sbjct: 297 FYCIIKNKKCFIRGKICMNISIIEIPQDLKINIGDKVEIVSERLSLDILSKESGRSTYEL 356

Query: 358 LVRIGTRYAKFY 369
           L  IG    K Y
Sbjct: 357 LCSIGKNEKKKY 368


>gi|328472253|gb|EGF43123.1| alanine racemase [Vibrio parahaemolyticus 10329]
          Length = 404

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 152/380 (40%), Gaps = 34/380 (8%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+ID  A  NN   +   L GN +  A++K +AYG G   + P++    V    +TS 
Sbjct: 41  AWLEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSN 100

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           EE   +R +  + +I  +      + +      +  +I +  Q     ++  +     P 
Sbjct: 101 EEARVVREHGFEGKIMRVRAASRNEIENGVQYEIEELIGTKMQADQIIEIAYNYNTVIPV 160

Query: 125 ALQVDT-GFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L ++T G  R GL L             +    ++  +++H              +++R
Sbjct: 161 HLALNTSGMGRNGLDLTTYEGQVEGVEIASDPNLKIVGMMTHFPN---EGLDEIRRKVDR 217

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F+              K I   +A+S   L  P  H  + RPG  LYG       + P +
Sbjct: 218 FKVETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYGDYP---ATLPYE 274

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +V+ + R+  +    AG  + YG  K L RDS++A   IGY+DG+  +LS         
Sbjct: 275 RIVSFKTRVASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN-------- 326

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   I G    ++GK +M+ TM D+TD + ++  D + +FG      I  ++    
Sbjct: 327 ---KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFGRQGFEEITAEETEEK 383

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           SG    +     G    + Y
Sbjct: 384 SGRILPEHYTIWGATNPRVY 403


>gi|212710795|ref|ZP_03318923.1| hypothetical protein PROVALCAL_01863 [Providencia alcalifaciens DSM
           30120]
 gi|212686492|gb|EEB46020.1| hypothetical protein PROVALCAL_01863 [Providencia alcalifaciens DSM
           30120]
          Length = 413

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 141/361 (39%), Gaps = 34/361 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            ++I  +AL  N   +  L G+ A   AV+K ++YG     + P +    VQ   +TS  
Sbjct: 50  WIEISHSALDYNIKKVQTLLGDKAGLCAVLKGDSYGHDLTLVTPVMIENNVQCIGLTSNT 109

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
           E  ++R    + R+  +      +     + ++  +I ++      + +        P  
Sbjct: 110 EFKQVRDLGFKGRLMRVRNATEKEMAQATEFHVEELIGNLDMAQRLNAIGAKQNTIIPIH 169

Query: 126 LQVDT-GFNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L +++ G +R GL +   E L            ++  I+SH     +         L +F
Sbjct: 170 LALNSAGMSRNGLEVSNAEGLQQAKLISQLPNLKIVGIMSHYP---EEDEAQIRQDLAKF 226

Query: 183 RTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           +              + +   +A++   L  P     + R G   YG T         + 
Sbjct: 227 KKQSQQVLKMTGLKREDVTLHVANTYATLTVPESWLDMVRVGGIFYGDTIATKD---YKR 283

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           V+T ++ I  +     G  V Y     L RDS++A   +GYADGY    S          
Sbjct: 284 VMTFKSNIAAVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN--------- 334

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350
              G   I G  VP+ GK +M+  M DITD  +++ GD +  FG     +I  ++V   S
Sbjct: 335 --AGHVLINGQRVPVFGKTSMNTVMVDITDLKNVQPGDEVVFFGKQGNGEITAEEVEEIS 392

Query: 351 G 351
           G
Sbjct: 393 G 393


>gi|261345933|ref|ZP_05973577.1| alanine racemase [Providencia rustigianii DSM 4541]
 gi|282566018|gb|EFB71553.1| alanine racemase [Providencia rustigianii DSM 4541]
          Length = 407

 Score =  255 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 144/358 (40%), Gaps = 28/358 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            ++I  +AL  N   + AL G+     AV+K +AYG     + P +    VQ   +TS  
Sbjct: 44  WIEISHSALDYNIKKVQALLGDKTGMCAVLKGDAYGHDLTLVTPVMIENNVQCIGLTSNS 103

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125
           E  ++R      R+  +      +     + N+  +I ++      + +    G   P  
Sbjct: 104 ELKQVRDLGFNGRLMRVRNATEKEMAQATEFNVEELIGNLEMAQRLNAIAVKQGKIIPIH 163

Query: 126 LQVDT-GFNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L +++ G +R GL +     L            ++  I+SH    D      + V+ ++ 
Sbjct: 164 LALNSAGMSRNGLEVGTSTGLQQAKLISELPNLKIVGIMSHYPEEDAAQIRKDLVKFKKQ 223

Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
              +    G++       +A++   L  P     + R G   YG       +   + V+T
Sbjct: 224 SQQVLDITGLKREDVTLHVANTYATLTVPESWLDMVRVGGIFYG---DTVATKDYKRVMT 280

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++ I  +     G  V Y     L RDS++A   +GYADGY    S             
Sbjct: 281 FKSNIAAVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN-----------A 329

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351
           G   I G  VP+LGK +M+  + D+TD  +++ GD +  FG     +I  ++V   SG
Sbjct: 330 GHVLINGQRVPVLGKTSMNTVVIDVTDIKNVQPGDEVVFFGKQGVGEITAEEVEDISG 387


>gi|268589404|ref|ZP_06123625.1| alanine racemase [Providencia rettgeri DSM 1131]
 gi|291315242|gb|EFE55695.1| alanine racemase [Providencia rettgeri DSM 1131]
          Length = 409

 Score =  255 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/362 (22%), Positives = 138/362 (38%), Gaps = 34/362 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             ++I   AL  N   +  L G+ +   AV+K +AYG     + P +    VQ   VT+ 
Sbjct: 45  AWIEISRGALDFNIKKVQNLLGDKSSLCAVLKGDAYGHDLSLVTPIMIENNVQCIGVTNN 104

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
           +E   +R    + R+  +      +           +I ++      + +        P 
Sbjct: 105 QELKTVRDLGFKGRLMRVRSATEQEMAQATQYETEELIGNLAMAQRLNAIAKKQNKVIPI 164

Query: 125 ALQVDT-GFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L +++ G +R GL +  A  LD           ++  I+SH     +         L +
Sbjct: 165 HLALNSAGMSRNGLDVSSASGLDEAKQIAELSQLKIVGIMSHYP---EEDEAQIRKDLAK 221

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F+              + I   +A++   +  P     + R G   YG T   N     +
Sbjct: 222 FKKESQQVLNVTGLKREDITLHVANTYATITVPESWLDMVRVGGIFYGDTVATND---YK 278

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T ++ I  +     G  V Y     L RDS++A   +GYADGY    S         
Sbjct: 279 RVMTLKSNIASVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN-------- 330

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
               G   I G  VP+LGK +M+  M D+TD   +  GD +  FG     +I  ++V   
Sbjct: 331 ---AGHALINGQTVPVLGKTSMNTVMVDVTDLKYVSPGDEVVFFGKQGHAEITAEEVEDI 387

Query: 350 SG 351
           SG
Sbjct: 388 SG 389


>gi|59711342|ref|YP_204118.1| alanine racemase [Vibrio fischeri ES114]
 gi|59479443|gb|AAW85230.1| alanine racemase [Vibrio fischeri ES114]
          Length = 403

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 148/380 (38%), Gaps = 34/380 (8%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+ID  A +NN  ++ A L  + +  A++K +AYG G E +  ++    V+   +TS 
Sbjct: 40  AWLEIDTQAFQNNIDTLRASLEQDTKVCAIMKADAYGNGIEGLMASVIERNVECIGITSN 99

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPY 124
           EE   +R       +  +    P + +      +  +I S  Q    +KL     +  P 
Sbjct: 100 EEARIVRAKGFVGELMRVRAASPNEIESGLQYKIEELIGSSEQANIIAKLAKQNNTIIPV 159

Query: 125 ALQVDT-GFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L ++  G  R GL L   +      N        +  I++H    +          L  
Sbjct: 160 HLALNAGGMGRNGLDLSQPQGKKEALNIAFNGHVNIVGIMTHFPN-ESVDEIRTK--LNL 216

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F+                I   +A+S   +  P  H  + RPG  LYG      +    +
Sbjct: 217 FKQESQWLIDEAQLNRDDITLHVANSYTTINLPEAHLDMVRPGGLLYGDMPNNPE---YK 273

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +V  +  +  +     G  + Y     L RDS++A   +GY+DGY  ++          
Sbjct: 274 RIVQFKTSVASLNYLPKGSTIGYSSTYVLGRDSILANLPLGYSDGYVRSIGN-------- 325

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
               G   I G    ++G  +M+ TM DITD  +++ GD + +FG      I+  ++   
Sbjct: 326 ---NGYVLINGQKANVVGVTSMNTTMVDITDIKNVQPGDEVVLFGKQNEFTIEAKEMEAF 382

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           S  +  +L V  G+   K Y
Sbjct: 383 SSRSMPELYVIWGSTNPKIY 402


>gi|213423375|ref|ZP_03356363.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 299

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 88/277 (31%), Positives = 133/277 (48%), Gaps = 3/277 (1%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           V LR      A + +L G+ P          + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 193

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+G   +   S P++   T    I+ ++
Sbjct: 194 KAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLTILRVQ 252

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
               G  + YG     TR   IA  + GYADG P  L
Sbjct: 253 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL 289


>gi|116617542|ref|YP_817913.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096389|gb|ABJ61540.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 373

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 155/383 (40%), Gaps = 28/383 (7%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M+ N   R   +++  +A+ +N   +   +      AV+K NA+  G  ++A     AG 
Sbjct: 1   MNYNAPHRHAVIELSQSAVVHNLKVIKENTHAKEIMAVLKANAFSHGLPEMASLSITAGA 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLM 116
             F +  ++E + LR       I VL    P   ++  + N+    S+   +     +L 
Sbjct: 61  TRFGMAMLDEALILRDLGYIQPIDVLGLTDPRYARLAAERNITLAFSTKESIKAAAEQLA 120

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
             G++   +L VDTG NR+G   +E L         +       + +H A AD P+    
Sbjct: 121 GTGLTLKVSLPVDTGLNRIGFKSREDLVAAIQEVSAQDTLIFQSMWTHFATADTPNVDYV 180

Query: 176 SVQLERFRTLISHYK--GIEASLASSSGILLGP-NYHFQLTRPGISLYGGT---DKINKS 229
             Q+  ++ L         E   A++      P   +  + R GI L+G       ++  
Sbjct: 181 DFQISEWQRLTHDLPVEPNEKHFANTGIATWYPEKINTDIVRLGIGLFGINGSVPIMSMP 240

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
             +   ++ +A+++  +    G+ V YG +     D  +    IG++DGYP   SG+ + 
Sbjct: 241 FELIPALSLKAKVVNSKPLKKGDAVGYGAEYHAPNDGYLITIPIGHSDGYPFNGSGMRAL 300

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345
            +            G +  I+G + MD +M  +T+   + VG  + + G      I + D
Sbjct: 301 VA-----------DGQIGHIVGGVAMDQSMILVTN--PVAVGTTVTLIGRVGDQSITMQD 347

Query: 346 VALASGTTNYDLLVRIGTRYAKF 368
           +A  + ++   L+     R  + 
Sbjct: 348 LAEHTQSSIVALMNDFAPRLQRI 370


>gi|197334487|ref|YP_002155497.1| alanine racemase [Vibrio fischeri MJ11]
 gi|197315977|gb|ACH65424.1| alanine racemase [Vibrio fischeri MJ11]
          Length = 403

 Score =  254 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 146/380 (38%), Gaps = 34/380 (8%)

Query: 7   LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+ID  A +NN  ++ A L    +  A++K +AYG G E +  ++    V+   +TS 
Sbjct: 40  AWLEIDTQAFQNNIDTLRASLEQGTKVCAIMKADAYGNGIEGLMASVIERNVECIGITSN 99

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPY 124
           EE   +R       +  +    P + +      +  +I S  Q    +KL     +  P 
Sbjct: 100 EEARIVRAKGFVGELMRVRAASPNEIESGLQYKIEELIGSSEQANIIAKLAKQNDTIIPV 159

Query: 125 ALQVDT-GFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L ++  G  R GL L   +      N        +  I++H    +          L  
Sbjct: 160 HLALNAGGMGRNGLDLSQPQGKKEALNIAFNGHVNIVGIMTHFPN-ESVDEIRTK--LNL 216

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F+                I   +A+S   +  P  H  + RPG  LYG      +    +
Sbjct: 217 FKQESQWLIDEAQLNRDDITLHVANSYTTINLPEAHLDMVRPGGLLYGDMPNNPE---YK 273

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +V  +  +  +     G  + Y     L RDS++A   +GY+DGY  ++          
Sbjct: 274 RIVQFKTSVASLNYLPKGSTIGYSSTYVLGRDSILANLPLGYSDGYVRSIGN-------- 325

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
               G   I G    ++G  +M+ TM D+TD  +++ GD + +FG      I+  ++   
Sbjct: 326 ---NGYVLINGQKANVVGVTSMNTTMVDVTDIKNVQPGDEVVLFGKQNEFTIEAKEMEAF 382

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
           S  +  +L V  G    K Y
Sbjct: 383 SSRSMPELYVIWGATNPKIY 402


>gi|33593228|ref|NP_880872.1| alanine racemase, catabolic [Bordetella pertussis Tohama I]
 gi|33563603|emb|CAE42504.1| alanine racemase, catabolic [Bordetella pertussis Tohama I]
 gi|332382637|gb|AEE67484.1| alanine racemase, catabolic [Bordetella pertussis CS]
          Length = 387

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 137/377 (36%), Gaps = 36/377 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           L   ID  A+ +N   +    G      R  A VK +AYG G   + P L         V
Sbjct: 15  LHACIDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRA--ADGIAV 72

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFY--SKLMSCG 119
             + E  + R       I V  G+   +E  +     L  VI+ + QL +     L SC 
Sbjct: 73  RHLHEAHQCRRVGWSGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYSCA 132

Query: 120 VSHPYALQVDTGFNRLG----LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
              P+      G  RLG       + A             +    ++H A A        
Sbjct: 133 ---PWIWLRYIGATRLGGLDASEYRRAYARCRELQQHGALRGVGHLNHYANAASVGDL-- 187

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPN--YHFQLTRPGISLYGGTD---KINKSH 230
             +   F   I    G   S  +S+   + P         RPG++LYG +    +  +  
Sbjct: 188 EREHADFEACIRGLPG-PVSTCNSAAACVLPTMAARTDWVRPGLALYGVSPIPGRAGRDL 246

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +T  + +   +   AG  V YG      +   + +   GY DGYP         H
Sbjct: 247 GLRPAMTLRSTLCATQNLPAGASVGYGCTFVADQPMALGLVRCGYGDGYP---------H 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALA 349
           +P         + G +   +G+I+MD+   D+    +   G  + ++G P + ++ +A A
Sbjct: 298 NPRASF--PVQVDGVLTRTVGRISMDLMAVDLRPIPAAARGAPVVLWGSPQLPVEHIAHA 355

Query: 350 SGTTNYDLLVRIGTRYA 366
           +GT   +LL  +  R  
Sbjct: 356 AGTIAAELLTGLTARVP 372


>gi|33596854|ref|NP_884497.1| alanine racemase, catabolic [Bordetella parapertussis 12822]
 gi|33573555|emb|CAE37547.1| alanine racemase, catabolic [Bordetella parapertussis]
          Length = 387

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 139/377 (36%), Gaps = 36/377 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           L   ID  A+ +N   +    G      R  A VK +AYG G   + P L         V
Sbjct: 15  LHACIDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRA--ADGIAV 72

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFY--SKLMSCG 119
             + E  + R    +  I V  G+   +E  +     L  VI+ + QL +     L +C 
Sbjct: 73  RHLHEAHQCRRVGWRGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYACA 132

Query: 120 VSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
              P+      G  RLG       + A             +    ++H A A        
Sbjct: 133 ---PWVWLRYIGATRLGGLDAGEYRRAYARCRELQQHGALRGVGHLNHYANAASVGDL-- 187

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPN--YHFQLTRPGISLYGGTD---KINKSH 230
             +   F   I    G   S  +S+   + P         RPG++LYG +    ++ +  
Sbjct: 188 EREHADFEACIRGLPG-PVSTCNSAASCVMPTMAARTDWVRPGLALYGVSPIPGRVGRDL 246

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +T  + +   +   AG  V YG      +   + +   GY DGYP         H
Sbjct: 247 GLRPAMTLRSTLCATQNLPAGASVGYGCAFVADQPMALGLVRCGYGDGYP---------H 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALA 349
           +P         + G +   +G+I+MD+   D+    +   G  + ++G P + ++ +A A
Sbjct: 298 NPRASF--PVQVDGVLTRTVGRISMDLMAVDLRPIPAAARGAPVVLWGSPQLPVEHIAHA 355

Query: 350 SGTTNYDLLVRIGTRYA 366
           +GT   +LL  +  R  
Sbjct: 356 AGTIAAELLTGLTARVP 372


>gi|322805978|emb|CBZ03545.1| alanine racemase [Clostridium botulinum H04402 065]
          Length = 256

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 26/253 (10%)

Query: 132 FNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
             RLG     E+L+      +    ++  + SH + +D+     +  Q + F+       
Sbjct: 1   MGRLGFDPTVESLEEIKRIQDLSNIKIEGLSSHFSSSDENDKSYSEYQFKIFQNFRKKLI 60

Query: 191 GIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARI 242
           GI        +++S+ I+  P+ +    R GI LYG    +    ++  ++ V+T +A I
Sbjct: 61  GINMKIPIYHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVNKENLHIKQVMTLKANI 120

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           + I+   +G+ V Y  + K  R S IA+  +GY DGY   LS             GK  I
Sbjct: 121 VHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR-----------GKVII 169

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALASGTTNYD 356
            G   PI+G I MD  M D+TD   ++VGD + I G D         +D+A   G T+ +
Sbjct: 170 NGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAEDIASKVGMTSGE 229

Query: 357 LLVRIGTRYAKFY 369
           ++  I  R  + Y
Sbjct: 230 IMSIISKRVPRVY 242


>gi|213648187|ref|ZP_03378240.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
          Length = 295

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 15/302 (4%)

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           + LR      A + +L G+ P          + P+++SV Q+  +  L        P  +
Sbjct: 1   MALRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLI 60

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q+D+G +RLG++ ++          +       IISHLA AD P   +N  Q    +   
Sbjct: 61  QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 120

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
             +     SLA+S G+ L P +   L RPG++L+G   +   S P++   T    I+ ++
Sbjct: 121 KAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLTILRVQ 179

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
               G  + YG     TR   IA  + GYADG P  L                   +G  
Sbjct: 180 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNLRPPAG-----------VCWRGVR 228

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +P+LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 229 LPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFR 287

Query: 367 KF 368
           + 
Sbjct: 288 RI 289


>gi|291541767|emb|CBL14877.1| alanine racemase [Ruminococcus bromii L2-63]
          Length = 394

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 89/399 (22%), Positives = 154/399 (38%), Gaps = 56/399 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++IDL  +  N  ++     + +   AV+K + YG G  ++A  +Y  G+  F V+S+EE
Sbjct: 6   VEIDLDKIGANARAITQKYSDYKYFIAVLKGDGYGHGM-EVANEMYKNGINYFAVSSLEE 64

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--HPYA 125
               R     A +  L+ +H  + +     NL   ++ +    +  +L+   +       
Sbjct: 65  AQSFRKVNKDAPLLCLHPVHLSRIEEAKRLNLTIAVNELD---YLKRLLDLNIDCNFKVH 121

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           LQ+DTGFNRLG   +  +    +  N     L  I  H A A          Q+  F+ L
Sbjct: 122 LQIDTGFNRLGFKDKNEVKTAVDMINGSNFVLEGIYQHFATAGIFD-PHWDEQVRNFKEL 180

Query: 186 IS--HYKGIEA-SLASSSGILLGPNYHFQL-TRPGISLYGGTDKINK------------- 228
            S    K I    + SS  +L  P   F    R GI++YG     +              
Sbjct: 181 TSLIDLKKIPIVHMGSSVSMLTHPKQPFTTGVRMGIAIYGYNVAPDSLSNSPKDKLRKMR 240

Query: 229 -----------------SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
                               +Q  +  + RI+ ++K   GE   Y        D ++A+ 
Sbjct: 241 NNYFIKKYNISETYFDVKIDLQPAMKMKTRILQLKKVNKGEWFGYNASYTADEDIILAIL 300

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331
            +GY +G                    +  I G   P++G++ M+MT   +    S+++ 
Sbjct: 301 PVGYNNGI------------GHANHNRQVVINGKKYPVVGEMCMNMTAVKV--DSSVKID 346

Query: 332 DYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           D + + G  I +     +SG  N + LV IG    +FY 
Sbjct: 347 DEVTLLGDGITVGMFGRSSGMGNAEALVNIGKNNPRFYV 385


>gi|260461729|ref|ZP_05809975.1| alanine racemase [Mesorhizobium opportunistum WSM2075]
 gi|319785281|ref|YP_004144757.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|259032370|gb|EEW33635.1| alanine racemase [Mesorhizobium opportunistum WSM2075]
 gi|317171169|gb|ADV14707.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 381

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 143/381 (37%), Gaps = 28/381 (7%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++     +IDL A+++N+  +        +  A +K NAYG G   +A  L   G   F 
Sbjct: 16  ASREAWYEIDLGAIRHNYRQLRRHLPRTVKIFACLKRNAYGCGAGPVARTLATEGADGFA 75

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V ++ + + +R       + +  G  P   K I    L   +SS+ +L  +   MS    
Sbjct: 76  VATLPDAMAIREMGIDLPVLLYPGPLPTSAKTIEALGLTVTVSSLDELESWRAAMS---V 132

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               ++ D GF R G + QE       +      ++  + +HL+      +   S Q  R
Sbjct: 133 TRIFVKADLGFFRAGATPQEIGRLLAAAHVCSDVEVQGLYAHLSELPTSVTSDASEQFSR 192

Query: 182 FRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQT 234
            + ++        +     ++S++G+L  P        PG    G   TD+  ++  ++ 
Sbjct: 193 LQRILQDAEASGTRPPIIMMSSTAGVLRHPAMDLDAVDPGALFIGLPETDRPMRAVTLRP 252

Query: 235 VVTAEAR-IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            + A +  ++ +++  A  L              I V  +G+ DG P             
Sbjct: 253 ALKAISTCLVSVKRIDA-SLGPIPDIPGFRSGMTIGVLGMGWGDGLPRH----------- 300

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
           V    +  ++G    +L    ++    D+TD      GD + + G      I  ++VA  
Sbjct: 301 VPAQAEALVRGQRARLLPPAHLEHLRIDLTDVPDARFGDQVLLLGQQAHQTISHEEVAAQ 360

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
            GT    L  ++     + Y 
Sbjct: 361 WGTDLIGLYAQLRDHIPRVYV 381


>gi|289805711|ref|ZP_06536340.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 245

 Score =  251 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 115/257 (44%), Gaps = 18/257 (7%)

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-F 150
             I    L   + +  QL     +          +++DTG +RLG+  +EA  F      
Sbjct: 2   PTISAQCLHTAVHNQEQLAALEAV-ELAEPVTVWMKLDTGMHRLGVRPEEAEAFYQRLTH 60

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF 210
            K + Q   I+SH A AD+P       QL+ F        G + S+A+S GILL P  HF
Sbjct: 61  CKNVRQPVNIVSHFARADEPECGATEHQLDIFNAFCQGKPG-QRSIAASGGILLWPQSHF 119

Query: 211 QLTRPGISLYGGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDS 266
              RPGI LYG +   +K        Q V++  + +I +R   AGE V YGG     RD+
Sbjct: 120 DWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSLIAVRDHKAGEPVGYGGTWVSERDT 179

Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
            + V A+GY DGYP                G    + G  VPI+G++ MDM   D+  + 
Sbjct: 180 RLGVVAMGYGDGYPRAA-----------PSGTPVLVNGREVPIVGRVAMDMICVDLGPNA 228

Query: 327 SIEVGDYIQIFGPDIKL 343
               GD + ++G  + +
Sbjct: 229 QDNAGDPVVLWGEGLPV 245


>gi|171315773|ref|ZP_02905005.1| alanine racemase [Burkholderia ambifaria MEX-5]
 gi|171099072|gb|EDT43852.1| alanine racemase [Burkholderia ambifaria MEX-5]
          Length = 378

 Score =  251 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 144/377 (38%), Gaps = 35/377 (9%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +I+  A+  N     +L     +   V K + +G G   +A    +AGV  F V 
Sbjct: 15  RPAWAEINRGAIAENLAVARSLVRDGVKVYFVCKGDGFGFGAATVARLAADAGVDGFCVG 74

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           S EEG  +R       + +     P     +    L   I S+         +  G++  
Sbjct: 75  SPEEGAAIRAAGINHEVLLFASTLPEDAARVASLGLTVTIQSMES---LHAFVRAGIAVD 131

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             +++D GF R G    +  +       + + +L  I +HL+        V   Q   F 
Sbjct: 132 AFVEIDPGFGRFGFLPSQWQEAFRALAAQSVVRLKGIYTHLSSPG--DDTVTGRQAGVFD 189

Query: 184 TLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVT 237
             ++      +  +   LASS  ++  P   ++   PG  LYG  D+      P++ ++ 
Sbjct: 190 AALADARASGFDDVTTMLASSRVMISHPELSYRAVDPGRLLYGALDREWMERVPLRPMLR 249

Query: 238 -AEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
              ARII +++  AG ++  G     +L R   + V  IG+ DG               V
Sbjct: 250 AVRARIIHVQQHPAGSMLGIGYAAPIRLERAMRVGVVPIGFGDGL------------NHV 297

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   ++G    +LG+ ++  T+ D+TD     +G  + + G D    I +D++A   
Sbjct: 298 PPLGHVLVRGVQARVLGRRSLQHTVIDLTDLPDAGIGSVVTLVGEDGAERITIDELADTL 357

Query: 351 GTTNYDLLVRIGTRYAK 367
                +LL     R  +
Sbjct: 358 KLPVMELL----PRLVR 370


>gi|33600629|ref|NP_888189.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50]
 gi|33568229|emb|CAE32141.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50]
          Length = 387

 Score =  251 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 138/377 (36%), Gaps = 36/377 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           L   ID  A+ +N   +    G      R  A VK +AYG G   + P L         V
Sbjct: 15  LHACIDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRA--ADGIAV 72

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFY--SKLMSCG 119
             + E  + R    +  I V  G+   +E  +     L  VI+ + QL +     L +C 
Sbjct: 73  RHLHEAHQCRRVGWRGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYACA 132

Query: 120 VSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
              P+      G  RLG       + A             +    ++H A A        
Sbjct: 133 ---PWIWLRYIGATRLGGLDAGEYRRAYARCRELQQHGALRGVGHLNHYANAASVGDL-- 187

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPN--YHFQLTRPGISLYGGTD---KINKSH 230
             +   F   I    G   S  +S+   + P         RPG++LYG +    ++ +  
Sbjct: 188 EREHADFEACIRGLPG-PVSTCNSAASCVMPTMAARTDWVRPGLALYGVSPIPGRVGRDL 246

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
            ++  +T  + +   +   AG  V YG      +   + +   GY DGYP         H
Sbjct: 247 GLRPAMTLRSTLCATQNLPAGASVGYGCAFVADQPMALGLVRCGYGDGYP---------H 297

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALA 349
           +P         + G +   +G+I+MD+   D+    +   G  + ++G P + ++ +A A
Sbjct: 298 NPRASF--PVQVDGVLTRTVGRISMDLMAVDLRPIPAAARGAPVVLWGSPQLPVEHIAHA 355

Query: 350 SGTTNYDLLVRIGTRYA 366
           + T   +LL  +  R  
Sbjct: 356 ADTIAAELLTGLTARVP 372


>gi|54310452|ref|YP_131472.1| alanine racemase [Photobacterium profundum SS9]
 gi|46914893|emb|CAG21670.1| putative alanine racemase [Photobacterium profundum SS9]
          Length = 404

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 146/383 (38%), Gaps = 34/383 (8%)

Query: 4   NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    L+ID  A   N   +   L  + +  A++K +AYG G   + P++    V    +
Sbjct: 38  SSNAWLEIDTQAFSGNIQLLQNQLKADTKICAIMKADAYGNGIAGLMPSIIANQVPCVGI 97

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121
           TS EE   +R +    +I  +      + +      +  +I +  Q     ++    G +
Sbjct: 98  TSNEEARVVRKHGFIGKIMRVRAASKNEIEGGLQYQMEELIGTKAQADQIIEIARANGTT 157

Query: 122 HPYALQVDT-GFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            P  L ++T G  R GL L                  ++  +++H              +
Sbjct: 158 IPVHLALNTSGMGRNGLDLTTYEGQVEGVEIAGDPNLEIVGMMTHFPN---EGLDEIKRK 214

Query: 179 LERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
           ++RF+              K +   +A+S   L  P  H  + RPG  LYG         
Sbjct: 215 VKRFKVETKWLMDSTDLKRKDVTLHVANSYITLNLPEAHLDMVRPGGMLYGDYPATA--- 271

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
           P Q +V+ +  +  +    AG  + YG    L RDS++A   IGY+DG+  +L       
Sbjct: 272 PYQRIVSFKTHVASLHHFPAGSTIGYGSTAVLERDSVLANLPIGYSDGFARSLGN----- 326

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346
                   +  I G    ++G ++M+ TM D+TD + ++  + + IFG      I  ++ 
Sbjct: 327 ------KAEVLINGQRARVMGMVSMNTTMVDVTDIVDVQTNEEVVIFGRQGFEEITGEET 380

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
              S     +     G    + Y
Sbjct: 381 EEKSNRILPEHYTVWGATNPRIY 403


>gi|222080194|ref|YP_002540057.1| alanine racemase [Agrobacterium vitis S4]
 gi|221738839|gb|ACM39618.1| alanine racemase [Agrobacterium vitis S4]
          Length = 294

 Score =  249 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 102/271 (37%), Positives = 141/271 (52%), Gaps = 3/271 (1%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL  N+  +  ++    TAAVVK +AYGLG E++A  LY  G + FFV    E 
Sbjct: 24  LTIDLGALSRNYELLAGMAAPGNTAAVVKADAYGLGAERVARTLYAKGCRHFFVAQFIEA 83

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            +LR      ARIFVL G+ PG E +    N++PVI+S+ Q    ++     G   P  +
Sbjct: 84  TRLRPALSYDARIFVLNGLQPGNEDVCAYENIVPVINSMDQWRNRNRTARRLGRRLPIVV 143

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGL  +E               +  ++SHLA ADD  S  N  QLE  R + 
Sbjct: 144 QFDTGMSRLGLPPEERPLLAEAVAQGSDVDILFLMSHLASADDEKSAQNGEQLEELRKIA 203

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246
           + + G + S A+S GI LG +Y   L RPGI+LYGG     ++ PM+ VV  +  ++  R
Sbjct: 204 AEFPGYDLSFANSGGIFLGDDYRGLLARPGIALYGGAPSAARN-PMEAVVRLDVAVVQTR 262

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
                  V YGG    TR++ +A  A G  D
Sbjct: 263 TVPGSTKVGYGGAHVTTRETRLATIAAGECD 293


>gi|290476786|ref|YP_003469697.1| Alanine racemase 2 [Xenorhabdus bovienii SS-2004]
 gi|289176130|emb|CBJ82935.1| Alanine racemase 2 [Xenorhabdus bovienii SS-2004]
          Length = 410

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 150/379 (39%), Gaps = 33/379 (8%)

Query: 7   LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             ++I+ T  +NN H++   L+ + +   V+K +AYG G + + P++   G+    +TS 
Sbjct: 43  AWVEINTTTFENNIHTLQSKLTKDTKVCVVLKGDAYGHGIDLLMPSVIKTGMPCVGITSN 102

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
           EE   +R    + ++  +      + +     ++  ++  +        L    G +   
Sbjct: 103 EEARIVRESGFKGQLMRIRAAAVTEIESTLGYDMEEMVGDLEHAKTIDALAKKHGKAIRV 162

Query: 125 ALQVDTG-FNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L ++TG  +R GL +  ++              +L  ++SH A             +  
Sbjct: 163 HLVLNTGRMSRNGLEMKTEQGKQEALKIAQLPNLKLVGMMSHYAL---KDLDAIREGVND 219

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           F+   +            I    +SS   +  P   F + R G +LYG  +   +    +
Sbjct: 220 FKEQTAWLIKTANLKRNEIILHASSSYASIRVPEAQFDMVRVGSALYGILNP--EYPEFK 277

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            ++  + R+  ++    G  VSY     L RDS +A   IG++DG+  +LS         
Sbjct: 278 PLIQVKTRVASVKPYPKGNGVSYDNTYILKRDSKLANLPIGFSDGFSSSLSN-------- 329

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349
                   I G+  P++G ++M+  M D+TD   ++ GD + IFG     +I   D+   
Sbjct: 330 ---KAFVLINGHRAPVVGLVSMNTVMVDVTDLPDVKSGDEVVIFGKQGKEEITQSDIQKW 386

Query: 350 SGTTNYDLLVRIGTRYAKF 368
            G    +     G    + 
Sbjct: 387 GGMHIVEFSSIWGETNPRI 405


>gi|332982771|ref|YP_004464212.1| alanine racemase [Mahella australiensis 50-1 BON]
 gi|332700449|gb|AEE97390.1| alanine racemase [Mahella australiensis 50-1 BON]
          Length = 366

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 144/379 (37%), Gaps = 38/379 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L++D  A+ +N  ++    G     AVVK NAYG G  +++  L +AGV+ F V  ++EG
Sbjct: 6   LEVDKRAIIDNLETVRKEVG-VSVMAVVKGNAYGHGAVEVSATLADAGVEWFGVEFLDEG 64

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
           V+LR    + RI    G     + +   + ++ P + ++      +       +     L
Sbjct: 65  VRLRESGIEGRILCFTGPVDKDDCRAFIEYDITPAMYNLDAAAMLNDVAEEEDIMFKVHL 124

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           + DTG  R G +  E           +  +     +H A A         +QLERF   +
Sbjct: 125 KFDTGMGRFGFTYDELDGVIDRLKAFEHLEYEGAFTHFAAAFAKKPDYTLLQLERFNKCM 184

Query: 187 SHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
              +  GI+      A+S   +  P     + R G +L+G     N+S  ++     +A 
Sbjct: 185 DKLETGGIKVQIRHAANSVAAMDFPQARLDMVRVGGALFGTAMFKNRSVKLKKTALLKAI 244

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK-- 299
           ++ +R    G  + YG   + ++   I V   GY +G  +            + +     
Sbjct: 245 LMDVRDMPKGAYIGYGCTYRTSKPMRIGVIPFGYFEGLKVQRRNYAFHFLDLLRILYHDI 304

Query: 300 ---------GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                     F  G  + ILG+I + + + D++       GD + +    I LDD     
Sbjct: 305 MDYLRPVPIVFKDGRPLRILGRIGLQLAVVDLSGV-DAHPGDEVSVAIDPIYLDD----- 358

Query: 351 GTTNYDLLVRIGTRYAKFY 369
            T              + Y
Sbjct: 359 -T------------VPRVY 364


>gi|318081809|ref|ZP_07989118.1| alanine racemase [Streptomyces sp. SA3_actF]
          Length = 285

 Score =  248 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 29/294 (9%)

Query: 93  IIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
              + ++   +S         +   + G +    L+ DTG  R G    +      N+  
Sbjct: 1   AAIEADIDVSVSGQWALDEVAAAARAAGATARVHLKADTGLGRNGCQPADWPALVGNALA 60

Query: 152 KK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL--ISHYKGIEA---SLASSSGIL 203
            +   L ++  + SH ACAD+P     + QL  F  +  ++   G+ A    +A+S   L
Sbjct: 61  LQAEGLVRVVGLWSHFACADEPGHPSIAAQLTLFEEMTGLAARLGVRAEVRHIANSPATL 120

Query: 204 LGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
             P  H+ L RPGI++YG +       +    ++ V+   A + L+++   G  VSYG  
Sbjct: 121 SLPESHYDLVRPGIAMYGLSPSPTMGTHTDFGLRPVMRLVAPLALVKRVPGGHGVSYGHL 180

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
                D+ + +  +GY DG P   SG            G   + G    + G+I MD  +
Sbjct: 181 YVTPGDTTLGLVPLGYGDGIPRHASGS-----------GPVLVNGKWHTVAGRIAMDQFV 229

Query: 320 FDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D+        G    +FGP    +   +D A A+ +  Y+++ RIG R  + +
Sbjct: 230 VDLGGDTPA-PGSEAVLFGPGDRGEPSAEDWARAADSIVYEIVTRIGARVPRVH 282


>gi|255017730|ref|ZP_05289856.1| hypothetical protein LmonF_08290 [Listeria monocytogenes FSL
           F2-515]
          Length = 255

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 108/260 (41%), Gaps = 25/260 (9%)

Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           +    L+VD+G  RLG+   +EA      S N    QL  I +H A AD   +     QL
Sbjct: 8   TLRIHLKVDSGMGRLGIRTAEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQL 67

Query: 180 ERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233
            +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++
Sbjct: 68  AKFQTILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELK 127

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +     ++ +++   G+ VSYG     T    +A   IGYADG     SG        
Sbjct: 128 PALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF------- 180

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349
                   + G   PI+G++ MD T+  +      + G  + I G D    +  DD A  
Sbjct: 181 -----HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTVTADDAAQY 233

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
             T NY++   +  R  + Y
Sbjct: 234 LDTINYEVTCLLNERIPRKY 253


>gi|332286614|ref|YP_004418525.1| alanine racemase, catabolic [Pusillimonas sp. T7-7]
 gi|330430567|gb|AEC21901.1| alanine racemase, catabolic [Pusillimonas sp. T7-7]
          Length = 388

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 133/373 (35%), Gaps = 33/373 (8%)

Query: 11  IDLTALKNNWHSMNALS------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           ID TA+++N + +  L             AV K +AYG   E     L         V +
Sbjct: 29  IDHTAIRHNLNRLRQLLAYPKTLPTPLIWAVAKADAYGHTLEHAYAGLCE--ADGLAVLT 86

Query: 65  VEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E    R       I  +   I     +      L  +I    QL     L     S  
Sbjct: 87  LDEARHCRSLGWTGPILAMSAQITQAALEDPILYPLHLIIDHQEQLAAIQSLRP-PFSPH 145

Query: 124 YALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L+     N  G      + A     +            + H A A++    +   Q  
Sbjct: 146 VWLRYRGRLNHAGFDQAGYKSAYASLQSGLRDGRLAELGHLQHYATAEEAEPMLAERQ-- 203

Query: 181 RFRTLISHYKGIEASLASSSGILLGPN--YHFQLTRPGISLYGGTDKIN---KSHPMQTV 235
            F+ LI    G      +S+ +L   +        R GI+LYG +       K   ++  
Sbjct: 204 AFQLLIEGLPG-PVCTDNSAALLSDHSGAALTSWVRSGIALYGISPLAGLNGKDLGLRPA 262

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +  +A +   +   AG+ + YG     +R + + +   GYA GYP ++            
Sbjct: 263 MVLQAPLYGFQTLQAGDSLGYGSTFLASRKTRVGLVRCGYAHGYPRSI-----------P 311

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTN 354
            G +  + G M  I+G+++MD    D+TD      G  + ++G P++ ++ VA  + T  
Sbjct: 312 EGCEVMVTGRMATIIGRVSMDTLTIDLTDHPDAGYGTVVTLWGTPELPIEVVAAQANTIP 371

Query: 355 YDLLVRIGTRYAK 367
             L   +  R  +
Sbjct: 372 AQLCTALTERVPR 384


>gi|172056530|ref|YP_001812990.1| alanine racemase [Exiguobacterium sibiricum 255-15]
 gi|171989051|gb|ACB59973.1| alanine racemase [Exiguobacterium sibiricum 255-15]
          Length = 352

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 96/369 (26%), Positives = 163/369 (44%), Gaps = 32/369 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + ID  A+++N  S+ A S N +  AVVK+NAY LG  ++   L  AGV+ F V  V E 
Sbjct: 7   VTIDREAVRHNVASVFARS-NKQIFAVVKNNAYNLGMIEMVATLMEAGVRHFAVAEVYEA 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++++   P + +  +      +E       L  V   +P L + ++  +        L++
Sbjct: 66  IEIKTNFPDSYVLAMNPASDFKE-----VRLHGVALGIPSLDWLTRHQADLSGIELHLKI 120

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           + G NR G+ SL+EAL        ++L  L+ + +H   AD+P +  +  Q+ERF  + +
Sbjct: 121 NVGMNRFGVSSLEEALAVLETVREQEL-TLTGLYTHFPLADEPGAD-HDGQVERFLEIGN 178

Query: 188 HYKGIE----ASLASSSGILLGPN--YHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
             +           +S+ I+            RPGI L+G +  I K   +   +     
Sbjct: 179 PLQAKHSFTYIHAENSATIVKHDPRLACCNYVRPGIFLFGYSP-IEKMDWLVPSLRMTTE 237

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ IR+  AGE V YG          +AV  +GY DG     S L               
Sbjct: 238 VVEIRQVEAGEHVGYGTSYTAPTAIRVAVLPVGYGDGVVRGRSSL------------PVI 285

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY-DLLVR 360
           I G   PI+ K+ M  T   +    ++E+GD + ++G  I++DD+   +GT N  + +  
Sbjct: 286 INGKRYPIISKLFMSHTFIAV--DSTVEIGDKVVLYGDGIEIDDITR-TGTANNSEQMCA 342

Query: 361 IGTRYAKFY 369
              R    Y
Sbjct: 343 RSWRLTHRY 351


>gi|167624749|ref|YP_001675043.1| alanine racemase [Shewanella halifaxensis HAW-EB4]
 gi|167354771|gb|ABZ77384.1| alanine racemase [Shewanella halifaxensis HAW-EB4]
          Length = 406

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 136/377 (36%), Gaps = 28/377 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+++LT   +N   +      N +  A++K +AYG G   + P +    +    VTS E
Sbjct: 43  WLEVNLTQFDSNIKELKNHIQSNVKVCAIMKADAYGNGIAGLMPTVLANNIPCIGVTSNE 102

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125
           E   +R    +  +  +      +       ++   +    Q T  S             
Sbjct: 103 EIRIVRDAGFRGSLIRVRSASIAEISDTLQYDVEEFVGDANQATLLSAMAAKLDKPLKVH 162

Query: 126 LQVDT-GFNRLG--LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNSV 177
           L +++ G  R G  +S Q  L+            +  I++H    D            + 
Sbjct: 163 LVLNSGGMGRNGVDVSTQSGLNEAVQIATTADLDVVGIMTHFPSYDRDDVLVKSKSFYNS 222

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
            L            +     +S   L  P  HF + RPG  LYG     N   P  ++VT
Sbjct: 223 ALNIIEESGLKRDSVTIHSGNSYVALNVPEAHFDMVRPGGVLYGDQPT-NPEFP--SIVT 279

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            + RI  +     G  V Y    KL R+SL+A   +GY+D +P  +              
Sbjct: 280 FKTRIASLVDLPKGATVGYDSTIKLERESLLANLPVGYSDSFPRKMGNT----------- 328

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353
               + G    ++G I+M+ +M D+TD   ++ GD + +FG      I   +    +   
Sbjct: 329 ADVLVNGQRAKVMGVISMNTSMIDVTDLSGVKEGDEVVLFGYQGKESILAPEFEKNADVI 388

Query: 354 NYDLLVRIGTRYAKFYT 370
             ++  + G    + Y 
Sbjct: 389 FPEIYTQWGQTNPRIYV 405


>gi|297517360|ref|ZP_06935746.1| alanine racemase [Escherichia coli OP50]
          Length = 255

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 112/260 (43%), Gaps = 13/260 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L+V++G NRLG      L                ++SH A A+ P     ++   R 
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAM--ARI 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238
                  +    SL++S+  L  P  HF   RPGI LYG +         +  ++ V+T 
Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235

Query: 239 EARIILIRKALAGELVSYGG 258
            + II ++   AGE V YGG
Sbjct: 236 SSEIIGVQTLKAGERVGYGG 255


>gi|229917987|ref|YP_002886633.1| alanine racemase [Exiguobacterium sp. AT1b]
 gi|229469416|gb|ACQ71188.1| alanine racemase [Exiguobacterium sp. AT1b]
          Length = 362

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/365 (24%), Positives = 148/365 (40%), Gaps = 29/365 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + IDL A++ N   + AL       AVVK+NAY LG E +   LY+ GV+ F VT++EE 
Sbjct: 3   VTIDLNAIRENKRRIEAL--GRPVFAVVKNNAYNLGMEPVVTTLYDEGVRHFMVTTLEEA 60

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           +++R +   AR+ ++  ++  +   +   +    I S   L    + +         L++
Sbjct: 61  LEVRTHAESARVLIMNPVYTWEH--VHAHDFDVAIGSYEWLVSQREHLD---GVRLHLKL 115

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERFRTLIS 187
           D G NR G    E           +   L  + +H   AD  ++ V +SVQ+ERF    +
Sbjct: 116 DVGMNRFGAKTFEEALRIVAFCQNEGLNLVGLCTHFPLADADNAEVEHSVQVERFADWST 175

Query: 188 HYKGIE----ASLASSSGILLGPN--YHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
                        A+S+  L   +  +H    R GI LYG +  +     +      E  
Sbjct: 176 RLMERHTFELIHAANSAATLQDDSRLHHCTHVRVGIFLYGYS-SVEPVEWLVPAFYWETE 234

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++ +    AG  V YG          IAV  +GY DG       L               
Sbjct: 235 VVAVHDIEAGAHVGYGTGYTAESKERIAVLPVGYGDGLMRARRHL------------PVH 282

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           I+G   P +  I M  +   + +   +++GD + ++G + K+DDV       N + L   
Sbjct: 283 IEGRAYPFVSNIFMSHSFIKVDE--DVQIGDRVALYGIETKIDDVTRVGYANNSEQLCAR 340

Query: 362 GTRYA 366
             R  
Sbjct: 341 SWRVP 345


>gi|213419244|ref|ZP_03352310.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 234

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 104/233 (44%), Gaps = 10/233 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I    L   + +  QL     +          ++
Sbjct: 64  LRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAV-ELAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   I+SH A AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAFC 182

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTV 235
               G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V
Sbjct: 183 QGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPV 234


>gi|332654258|ref|ZP_08420002.1| alanine racemase [Ruminococcaceae bacterium D16]
 gi|332517344|gb|EGJ46949.1| alanine racemase [Ruminococcaceae bacterium D16]
          Length = 400

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 143/377 (37%), Gaps = 30/377 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67
           L +D+  ++ N  ++      A+   V+KDNAYGLG E +   +     +    V  V E
Sbjct: 38  LSVDMKRVRRNVATVLEELQGAQLIPVLKDNAYGLGLEAMGHVMEEFPQITTLAVAQVGE 97

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
           G  LR       I +L G+     +   + +L   +  +  L   + L  S G      +
Sbjct: 98  GAALRQAGITREILILGGVPAHLLRAAVELDLTLSVGRLELLPVLALLGQSAGRRVKIQI 157

Query: 127 QVDTGFNRLGLSLQEALD--FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           +++TG NR G+     L          +   Q+    SH A  +   +     Q E F  
Sbjct: 158 KIETGLNRTGVMPGAELAHLLEEWRSARNHFQIMGAFSHFADLE--DTERTRQQYELFLE 215

Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239
            +   +          +++S+     P Y     R G  LY            +T  T  
Sbjct: 216 GVEQLQAGGMEIPLRHISASAAHEQFPQYRLDGVRIGRRLYMDHPTQPTGRVSETA-TWR 274

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
             I  +R   AG  + YGG+  L RDS +A  A+GY DG    L          V + G 
Sbjct: 275 TWITGLRTLQAGSPLGYGGKVFLERDSTVATIAVGYGDGLSEEL----------VRVHGP 324

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTT- 353
             + G     L    MD T+ D+T      VGD + +FG D     +   +VAL  G   
Sbjct: 325 VLVGGERAR-LMACCMDQTLVDVTGIP-CRVGDPVTLFGWDEQGNLLASQEVALLVGEDE 382

Query: 354 NYDLLVRIGTRYAKFYT 370
              L  ++  R A+ Y+
Sbjct: 383 GCGLTAQLSPRVARIYS 399


>gi|296161155|ref|ZP_06843965.1| alanine racemase [Burkholderia sp. Ch1-1]
 gi|295888678|gb|EFG68486.1| alanine racemase [Burkholderia sp. Ch1-1]
          Length = 390

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 141/376 (37%), Gaps = 31/376 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                ++D  A+  N        G+A +   V K + +G G  K+A     AGV  F V 
Sbjct: 19  RPSWAELDYGAIAANLAVAREQVGHATKIYFVCKGDGFGFGAAKVARLAAQAGVDGFCVG 78

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           S EEGV +R       I +     P     +    L   I S          +  GV+  
Sbjct: 79  SPEEGVAIRRAGIDRDILLFASTLPEDAAQVAALGLTVTIQSQES---LHAFIDAGVAVD 135

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182
             L++D GF R G    +         ++   +L  + +HL+  ++    V   Q   F 
Sbjct: 136 AFLEIDPGFGRFGFLPSQWQAAFAALRDQSTVRLKGVYTHLSSPENDD--VTRQQAGVFD 193

Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVT 237
                   + +  I   LASS  +L  P+  +Q   PG  LYG  D       P++ ++ 
Sbjct: 194 AALADARAAGFDNITTMLASSRVMLAHPHLAYQAVDPGRLLYGALDAEWMVRAPLRPMLR 253

Query: 238 -AEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
               RII +++  AG  +  G     +L R   I V  IG+ DG               V
Sbjct: 254 AVRGRIIHVQEHPAGSTLGIGYAEPIRLERGVRIGVVPIGFWDGL------------NHV 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G+  + G    ILG+ +   T+ DIT+      G  + + G D    I +D++A   
Sbjct: 302 PPLGRVLVHGQAARILGRRSFQHTVIDITEIAQARTGSVVTLLGQDGDQSITIDEMAETL 361

Query: 351 GTTNYDLLVRIGTRYA 366
                +L+ R+     
Sbjct: 362 RLPVMELVPRLARSLP 377


>gi|300724984|ref|YP_003714309.1| putative alanine racemase [Xenorhabdus nematophila ATCC 19061]
 gi|297631526|emb|CBJ92233.1| putative alanine racemase [Xenorhabdus nematophila ATCC 19061]
          Length = 410

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 150/380 (39%), Gaps = 27/380 (7%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           ++    ++I+ T  +NN H +   L+ N +  AV+K +AYG G   + P++   GV    
Sbjct: 39  AHNNAWVEINTTTFENNIHILQQKLNRNTKMCAVLKGDAYGHGIGLLMPSVIKTGVLCVG 98

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120
           +TS EE   +R    + ++  +      + +     ++  +I  +      + L    G 
Sbjct: 99  ITSNEEARIVRESGFKGQLIRIRTADVSEIESTLGYDMEEIIGDLAHAKTVADLAKKHGK 158

Query: 121 SHPYALQVDTG-FNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACAD-----DPSS 172
                L ++TG  +R GL +  ++              +L  I+SH A  D     D   
Sbjct: 159 EIRVHLALNTGLMSRNGLEMKTEQGKQEALKMTQLPNLKLVGIMSHHALTDLDAIRDSIK 218

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
           + N       +        I    +SS   +  P   F + R G +LYG     N     
Sbjct: 219 NFNEQTAWLIKAANLKRDEITLHASSSFASVSIPEAQFDMVRVGSALYGIL--TNTHPEF 276

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + ++  +  +  ++    G  VSY     L RDS +A   +G++DG+  +LS        
Sbjct: 277 KPLIQVKTHVASVKSYPKGNGVSYNNTYILKRDSKLANLPVGFSDGFSSSLSN------- 329

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348
                    I G+  P++G ++M+  M D+TD   ++ GD + IFG     +I   D+  
Sbjct: 330 ----KAYVLINGHRAPVVGSVSMNTVMADVTDLPEVKSGDEVVIFGKQGNEEITQSDIQK 385

Query: 349 ASGTTNYDLLVRIGTRYAKF 368
             G    +     G    + 
Sbjct: 386 WGGMHVVEFSSIWGETNPRI 405


>gi|238022778|ref|ZP_04603204.1| hypothetical protein GCWU000324_02689 [Kingella oralis ATCC 51147]
 gi|237865981|gb|EEP67117.1| hypothetical protein GCWU000324_02689 [Kingella oralis ATCC 51147]
          Length = 410

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 147/375 (39%), Gaps = 28/375 (7%)

Query: 8   RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+ID  A   N  ++   L G  +  AV+K +AYG   E + P +    +    +TS +
Sbjct: 47  WLEIDAAAFGRNLEAVKKMLGGKQKICAVIKGDAYGNSIELLMPQIIKHKIPCVGITSND 106

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYA 125
           E   +R    +  +  L     G+ +  F  N+  +  ++       +     G      
Sbjct: 107 EARVVRASGYKGTVARLRTTTLGEIEDGFQYNIEELFGNLKAAQLADAAAAKRGKKLNIH 166

Query: 126 LQVDTG-FNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL-ER 181
           L ++ G  +R GL+L  +                +  I++H    D         +  E+
Sbjct: 167 LALNAGGMDRNGLALDTESGKADALAIAKLPHLNIVGIMTHFPVEDVADVKKGVQRFDEQ 226

Query: 182 FRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
            + LI   K     +    A+S   +  P   F + RPG  LYG   +      ++ V+ 
Sbjct: 227 SKWLIQAAKLDRSKLTLHTANSFTTVSVPEGRFDMVRPGALLYG---EPIGGKQLEYVMA 283

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            ++R+  + +   G  V Y     L RDS +A    GY+DGY    +             
Sbjct: 284 FKSRVGSVNRYPKGSTVGYDRTFTLKRDSRLANLPFGYSDGYRRAFTN-----------K 332

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVALASGTT 353
           G   I+G+ VP++GKI+M+ TM D+TD   I+  D + IFG   K +    ++   +   
Sbjct: 333 GHVLIRGHKVPVVGKISMNTTMVDVTDFPDIQANDEVVIFGKQGKAEIKQSEIEEIADVL 392

Query: 354 NYDLLVRIGTRYAKF 368
             D+    G    K 
Sbjct: 393 FADIYTVWGNSNPKI 407


>gi|261210961|ref|ZP_05925251.1| alanine racemase [Vibrio sp. RC341]
 gi|260839936|gb|EEX66536.1| alanine racemase [Vibrio sp. RC341]
          Length = 335

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 131/351 (37%), Gaps = 33/351 (9%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF 95
           +K +AYG G   + P +   G+    V S  E   +R    +  +  +      +   + 
Sbjct: 1   MKADAYGNGIRGLMPTIIAQGIPCVGVASNAEARAVRESGFKGELMRVRSASLSEMSAVL 60

Query: 96  DTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQV-DTGFNRLG--LSLQEALDFTHNSFN 151
           D N+  +I +  Q    + L    G +    + + D G  R G  ++ +       +   
Sbjct: 61  DLNIEELIGTHQQAMELADLAKKTGKTIKVHMALNDGGMGRNGIDMTTEAGKKEALSIAT 120

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--------KGIEASLASSSGIL 203
           +    +  +++H    +          L +F+   +          + I   +A+S   L
Sbjct: 121 QPSLNIVGMMTHFPNYNADEVRTK---LAKFKESSAWLIEQSNLKREDITLHVANSYTAL 177

Query: 204 LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
             P     + RPG  LYG     N  +P  ++V+ + R+  +     G  V Y      +
Sbjct: 178 NVPEAQLDMVRPGGVLYGDLPT-NPEYP--SIVSFKTRVASLHHVPKGSTVGYDSTFTTS 234

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
           RDS++A   +GY+DGYP  +                  + G    ++G  +M+ T+ D+T
Sbjct: 235 RDSVLANLPVGYSDGYPRKMGN-----------KADVLVNGQRAKVVGVTSMNTTVVDVT 283

Query: 324 DSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           D   +  G  + ++G      I + ++   +     +L    G    +FY 
Sbjct: 284 DIKGVLPGQEVALYGQQQKQSIAVSEMENNAELIFPELYTLWGNSNPRFYV 334


>gi|313677342|ref|YP_004055338.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312944040|gb|ADR23230.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 395

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 159/403 (39%), Gaps = 46/403 (11%)

Query: 1   MHSNEFLRLKIDLT--ALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M+ + F    I L+  A++ N   +   L+ N   +AV+K NAYG G + + P   +A V
Sbjct: 1   MNQSIFSTSTITLSKSAVRQNVRFVRKRLAENVLLSAVLKGNAYGHGIKGMVPLFESANV 60

Query: 58  QDFFVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKL 115
           +   V S  E  ++         + ++  +   + +   +  +   +  +          
Sbjct: 61  KHLSVFSTHEAEQVCQVKKKTTEVMIMGWMEDEETEWAIENEVEFYVFEMGRLKAALHYA 120

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHV 174
            +        ++V+TG NR G   +   +       N +      + +H A A+  ++++
Sbjct: 121 KTLNKIAKIHVEVETGMNRTGFEEEHLEELMQMMKENHEYISFVGLCTHYAGAESITNYL 180

Query: 175 NSV-QLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
             V Q+++++ +                A S+  +  P     + R GI LYG       
Sbjct: 181 RVVDQIKKYKKIYDLFVENDLVPKRRHTACSAAAMSYPETQMDMVRIGILLYGFWPSQET 240

Query: 229 -------------------SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
                               HP++ V++  ++I+ +++   GE + YG   + T+   IA
Sbjct: 241 FIAYQRSNGHGQDGLDRKVRHPLKRVISWRSKIMSVKEVPVGEFIGYGTSYQATKKMKIA 300

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE 329
              +GYA G+  +LS             G+  + G  V ++  + M++ + ++T+  ++ 
Sbjct: 301 TVPVGYAYGFARSLSNQ-----------GRVIVNGKRVAVISTVNMNLMIINVTECKNVG 349

Query: 330 VGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKF 368
            GD + + G     ++ +      S   NY+LL R+     + 
Sbjct: 350 KGDEVIMIGSNGKVNVTVASFGELSNQLNYELLSRLPMDIPRR 392


>gi|239943637|ref|ZP_04695574.1| putative alanine racemase [Streptomyces roseosporus NRRL 15998]
          Length = 284

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 28/263 (10%)

Query: 124 YALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L+ DTG  R G    +  +      ++      +++ + SH ACAD+P     + QL 
Sbjct: 21  VQLKADTGLGRGGCQPADWPELVGAARDAERAGHLRITGLWSHFACADEPGHPSIAAQLA 80

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHP 231
            +R L+++ +  G++     LA+S   L  P  HF L R GI++YG +            
Sbjct: 81  VYRDLVAYAEKEGVDPEVRHLANSPATLTIPEAHFDLVRTGIAMYGISPAPELGTSAELG 140

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T  A + L++ A AG  VSYG       ++ + +  +GYADG P   SG      
Sbjct: 141 LRPVMTLAAAVALVKDAPAGHGVSYGHHYTTPAETTLGLIPVGYADGVPRHASGS----- 195

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   + G +  + G++ MD  + D+      E G    +FGP    +    D A
Sbjct: 196 ------GPVLVGGKVRTVAGRVAMDQFVVDLEGDRP-EAGAEAVLFGPGDRGEPTAQDWA 248

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
            A+ T  Y+++ RIG R  + Y 
Sbjct: 249 EAADTIAYEIVTRIGARVPRVYV 271


>gi|291447101|ref|ZP_06586491.1| alanine racemase [Streptomyces roseosporus NRRL 15998]
 gi|291350048|gb|EFE76952.1| alanine racemase [Streptomyces roseosporus NRRL 15998]
          Length = 283

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 28/263 (10%)

Query: 124 YALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
             L+ DTG  R G    +  +      ++      +++ + SH ACAD+P     + QL 
Sbjct: 20  VQLKADTGLGRGGCQPADWPELVGAARDAERAGHLRITGLWSHFACADEPGHPSIAAQLA 79

Query: 181 RFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHP 231
            +R L+++ +  G++     LA+S   L  P  HF L R GI++YG +            
Sbjct: 80  VYRDLVAYAEKEGVDPEVRHLANSPATLTIPEAHFDLVRTGIAMYGISPAPELGTSAELG 139

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+T  A + L++ A AG  VSYG       ++ + +  +GYADG P   SG      
Sbjct: 140 LRPVMTLAAAVALVKDAPAGHGVSYGHHYTTPAETTLGLIPVGYADGVPRHASGS----- 194

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   + G +  + G++ MD  + D+      E G    +FGP    +    D A
Sbjct: 195 ------GPVLVGGKVRTVAGRVAMDQFVVDLEGDRP-EAGAEAVLFGPGDRGEPTAQDWA 247

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
            A+ T  Y+++ RIG R  + Y 
Sbjct: 248 EAADTIAYEIVTRIGARVPRVYV 270


>gi|103486714|ref|YP_616275.1| alanine racemase [Sphingopyxis alaskensis RB2256]
 gi|98976791|gb|ABF52942.1| alanine racemase [Sphingopyxis alaskensis RB2256]
          Length = 348

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 182/373 (48%), Gaps = 37/373 (9%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKD-------NAYGLGCEKIAPALYNAGV 57
             LRL++D  AL  NW  +    G A               + YGLG   +   L  AG 
Sbjct: 6   PPLRLRLDSDALIANWRWLAGQGGAAA-------CGAAIKADGYGLGARWVMERLAAAGC 58

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           +DFFV +  E   L        + VL+G+              PV++SV Q+  +     
Sbjct: 59  RDFFVATWAEAAALMPLPQGISVSVLHGVGAADMVAARLLPARPVLNSVEQVQRW---RD 115

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G   P  + VDTG NRLGL ++E +             + +++SHLA AD+     N+ 
Sbjct: 116 SGEGRPCDVMVDTGMNRLGLRVEEVM-----GGALDGLAIDILLSHLASADE-DCGQNAA 169

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           QL  FR+L    +    SLA+S+GI LG +Y F LTRPGI+LYGGT +      ++ VV 
Sbjct: 170 QLASFRSLRETIRARRYSLANSAGICLGADYAFDLTRPGIALYGGTPRREAQGHIRQVVY 229

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            E R++ +R+  AGE V YG     + D+ +AV  +GYADGY    +G            
Sbjct: 230 PETRVLQLREVRAGESVGYGATWTASTDTRVAVTNMGYADGYLRCHAGS----------- 278

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           G    +G  +P++G+++MD+T FD + +  +   D++ I   +  L   A ASG + Y+L
Sbjct: 279 GGATWRGQSLPLIGRVSMDLTAFDASSTEGLREDDWLAI---EYDLPTRAAASGLSQYEL 335

Query: 358 LVRIGTRYAKFYT 370
           L  +G+R+ + +T
Sbjct: 336 LTGLGSRFGRGWT 348


>gi|115361255|ref|YP_778392.1| alanine racemase [Burkholderia ambifaria AMMD]
 gi|115286583|gb|ABI92058.1| alanine racemase [Burkholderia ambifaria AMMD]
          Length = 401

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 143/377 (37%), Gaps = 35/377 (9%)

Query: 5   EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E    +I+  A+  N     +L     +   V K + +G G   +A    +A V  F V 
Sbjct: 38  ESAWAEINRGAIAENLAVARSLVRDGVKIYFVCKGDGFGFGAATVARLAADARVDGFCVG 97

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           S EEG  +R       + +     P     +    L   I S+         +  G++  
Sbjct: 98  SPEEGAAIRAAGINHEVLLFASTLPEDAARVASLGLTVTIQSMES---LHAFVYAGIAVD 154

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182
             +++D GF R G    +  +       + + +L  I +HL+        V   Q   F 
Sbjct: 155 AFVEIDPGFGRFGFLPSQWQEAFRALAAQSVVRLKGIYTHLSSPGV--DTVTGRQAGVFD 212

Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVT 237
                   + +  +   LASS  ++  P   ++   PG  LYG  D+      P+Q ++ 
Sbjct: 213 AALADARAAGFDDLTTMLASSRVMIAHPELSYRAVDPGRLLYGALDREWMERVPLQPMLR 272

Query: 238 -AEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
              ARII +++  AG ++  G     +L R   + V  IG+ DG               V
Sbjct: 273 AVRARIIHVQQHPAGSMLGIGYAAPIRLERAMRVGVVPIGFGDGL------------NHV 320

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G   ++G    +LG+ ++  T+ D+TD     +G  + + G D    I +D++A   
Sbjct: 321 PPLGHVLVRGVQARVLGRRSLQHTVIDLTDLPDAGIGSVVTLVGEDGGKRITIDELADTL 380

Query: 351 GTTNYDLLVRIGTRYAK 367
                +LL     R  +
Sbjct: 381 KLPVMELL----PRLVR 393


>gi|320094525|ref|ZP_08026295.1| alanine racemase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978541|gb|EFW10114.1| alanine racemase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 360

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 124/341 (36%), Gaps = 30/341 (8%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID  A+  N   + A +  A+  AVVK NAYG G   +A     +G     V  + E V+
Sbjct: 18  IDHGAIARNLRVLRAAAPAAKQMAVVKANAYGHGLLPVALTALASGSDWLGVAQLPEAVE 77

Query: 71  LRL----YTPQ---ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122
           LR            A +                  +   +S    L   S      G   
Sbjct: 78  LREGLDRAGVDRASAPVLAWITTPGSDFAGAVRAGIDLSVSWTWVLDAISAAARAVGRPA 137

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK---KLGQLSLIISHLACADDPSS---HVNS 176
              +++DTG +R G +L +               L ++    SHL+  DDPS       +
Sbjct: 138 RVHVKIDTGMSRAGSTLADLPALASALAAAQADGLVEVVGAWSHLSRGDDPSEGGLASTA 197

Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---- 227
             +  F   +     +  +     LA+++GIL  P  H+ + R GI LYG +        
Sbjct: 198 SHVGIFERGLRVLGEAGVRPAIRHLAATAGILWHPETHYDMVRAGIGLYGLSPDPAVADS 257

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
           +   ++  +T  A +  ++    G  VSYGG  +        +  +GY DG   + S   
Sbjct: 258 RELGLRPAMTLRAPLTSVKVIERGAPVSYGGTWRAPTRRWAGLVPLGYGDGILRSASN-- 315

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
              +  V + G G          G++ MD  + D+  +   
Sbjct: 316 ---AAPVVVRGPGGDVPARC--AGRVCMDQFVIDLGPAGGA 351


>gi|46202740|ref|ZP_00052682.2| COG0787: Alanine racemase [Magnetospirillum magnetotacticum MS-1]
          Length = 228

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 12/237 (5%)

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191
            NRLGL ++EAL  + +    + G + L++SHL  A+ P   + + Q E F  + + +  
Sbjct: 1   MNRLGLRVEEALALSGDPVIARAG-IDLVMSHLVSAEQPDDPLTAHQAEAFARVRAAFPH 59

Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAG 251
           + ASLA+SSG  L  +    L RPG  L+GG  +  +++PM+ VV  EA I+ +R+  AG
Sbjct: 60  LRASLANSSGTCLADDARHDLLRPGYCLFGGNPEPGRANPMRPVVRLEATILQVRQVEAG 119

Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311
           E   Y  + +      +A  ++GYADGYP + S             G   + G + P+LG
Sbjct: 120 ETCGYNARWRAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGVLCPMLG 168

Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
            I+MD+ + D+T +     G    + G  + +D V  A+GT  Y++L  +G+RY + 
Sbjct: 169 LISMDLIILDVTHAPEARRGGTATLIGDSLDIDTVGQAAGTIGYEILTGLGSRYVRI 225


>gi|301167975|emb|CBW27561.1| alanine racemase [Bacteriovorax marinus SJ]
          Length = 375

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 89/383 (23%), Positives = 154/383 (40%), Gaps = 39/383 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPA-LYNAGVQDFFVTSVEEGV 69
           I    L+NN+  +  +  + +   +VK NAYG G   I    +   G+ +F   S+ E +
Sbjct: 9   ISFEKLENNYKKLKEICVDNKIIFMVKANAYGHGVIPIVRHSVEKLGITEFGCASLGEAL 68

Query: 70  KLRLYTPQA--RIFVLYGIH---PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            LR         I+V   +        +I  +  +IPVIS+   L F         + P 
Sbjct: 69  LLREELYDLEFEIYVFSDVQVELRECAEIYLNRRIIPVISNRDDLDFILNSREF-ENFPL 127

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP--SSHVNSVQLERF 182
            ++ +TG NRLGL + +  +   +        +  +++HL+ +  P   +  N +Q E F
Sbjct: 128 FIKFNTGMNRLGLEMDKVDEVIRSIRVSGRKSIYHLMTHLSSSSLPIKKNKRNIIQFENF 187

Query: 183 RTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-----SHPM 232
             +   +   GIE    S+A+S  I  G        RPG+ +YG +  + +         
Sbjct: 188 EKIKKAFSDAGIEVERTSIANSGAIEQGAGLGETHVRPGLMMYGPSSMLPQYSDLSLWSG 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + +   E  +I I     G+ V YG          +A+ A+GY DG+     G    H  
Sbjct: 248 EIISKLETYVISIFDVEKGQPVGYGAT-PCPSKGKVAIVALGYGDGFTTRYIGTHLYHKD 306

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMF--DITDSLSIEVGDYIQIFGPDIKLDDVAL-- 348
                    IKG    ++G++ MDM     D      ++VGD   ++  D   +  A   
Sbjct: 307 ---------IKGK---VVGRVNMDMAQVFFDENSLPDLKVGDSFTLW--DHSAERFAEFC 352

Query: 349 -ASGTTNYDLLVRIGTRYAKFYT 370
             +    Y++ + I  R  K Y+
Sbjct: 353 KEAKIIPYEVFIGITQRVPKIYS 375


>gi|325273199|ref|ZP_08139485.1| alanine racemase [Pseudomonas sp. TJI-51]
 gi|324101664|gb|EGB99224.1| alanine racemase [Pseudomonas sp. TJI-51]
          Length = 225

 Score =  238 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 16/235 (6%)

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198
            ++  +              +++SH A AD+  +   + Q+  F          E SL +
Sbjct: 2   PKDYHEAYQRLLASGKVARIVLMSHFARADELDADATAQQIAVFEAARQGLAA-ECSLRN 60

Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEARIILIRKALAGELVS 255
           S G+L  P       RPG+ LYG T       ++  +Q V+T ++R+I +R+  AG+ V 
Sbjct: 61  SPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPVMTLQSRVISVRELPAGQPVG 120

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
           YG +    R + + V A+GYADGYP                G    + G   P++G+++M
Sbjct: 121 YGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPVLVAGKRAPLIGRVSM 169

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           DM   D+TD     VG  ++++G  +   +VA  +GT  Y +   +  R    Y 
Sbjct: 170 DMLSIDLTDVPDATVGSPVELWGKQVLASEVAAQAGTIPYQIFCNL-KRVPLDYV 223


>gi|91779715|ref|YP_554923.1| alanine racemase [Burkholderia xenovorans LB400]
 gi|91692375|gb|ABE35573.1| Alanine racemase [Burkholderia xenovorans LB400]
          Length = 390

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 141/376 (37%), Gaps = 31/376 (8%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                ++D  A+  N        G   +   V K + +G G  K+A     AGV  F V 
Sbjct: 19  RPSWAELDYGAVAANLAVAREQVGRATKIYFVCKGDGFGFGAAKVARLAAQAGVDGFCVG 78

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           S EEGV +R       I +     P     +    L   I S          ++ GV+  
Sbjct: 79  SPEEGVTIRRAGIDRDILLFASTLPEDAAQVAALGLTVTIQSRES---LHAFINAGVAVD 135

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182
             L++D GF R G    +         ++   +L  + +HL+  +     V   Q   F 
Sbjct: 136 AFLEIDPGFGRFGFLPSQWQAAFAALRDQSTVRLKGVYTHLSSPESED--VTRQQAGVFD 193

Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTVVT 237
                   + +  +   LASS  +L  P+  +Q   PG  LYG  D    +  P++ ++ 
Sbjct: 194 AALADARAAGFDNLTTMLASSRVMLAHPHLAYQAVDPGRLLYGALDADWMARAPLRPMLR 253

Query: 238 -AEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
               RII +++  AG  +  G     +L R   I V  IG+ DG               V
Sbjct: 254 AVRGRIIHVQEHPAGATLGIGYAEPIRLERGVRIGVVPIGFWDGL------------NHV 301

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350
              G+  + G    ILG+ +   T+ DIT+  +   G  + + G D    I +D++A   
Sbjct: 302 PPLGRVLVHGQPARILGRRSFQHTVIDITEIAAARTGSVVTLLGQDGDQSITIDEMAETL 361

Query: 351 GTTNYDLLVRIGTRYA 366
                +L+ R+     
Sbjct: 362 RLPVMELIPRLARSLP 377


>gi|186895776|ref|YP_001872888.1| alanine racemase [Yersinia pseudotuberculosis PB1/+]
 gi|186698802|gb|ACC89431.1| alanine racemase [Yersinia pseudotuberculosis PB1/+]
          Length = 409

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 146/364 (40%), Gaps = 38/364 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I   AL  N   M  L  N +   A++K +AYG     + P +    VQ   V S 
Sbjct: 45  AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 104

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSH 122
           +E   +R      ++  +      + +     ++  +I       QL   +KL   G   
Sbjct: 105 QELKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLN--GKVL 162

Query: 123 PYALQVDT-GFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L +++ G +R GL + +A  L+        K   +  I+SH        +      L
Sbjct: 163 RIHLALNSAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPV---EDASEIKADL 219

Query: 180 ERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            RF+              + I+  +A++   L  P+    + R G   YG T     S  
Sbjct: 220 ARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTI---ASTE 276

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S       
Sbjct: 277 YKRVMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN------ 330

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   I+G  +P+LGK +M+  M D+TD   + +GD + +FG     +I+ +++ 
Sbjct: 331 -----AGHVIIQGQRLPVLGKTSMNTVMVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIE 385

Query: 348 LASG 351
             SG
Sbjct: 386 DLSG 389


>gi|293395857|ref|ZP_06640139.1| alanine racemase [Serratia odorifera DSM 4582]
 gi|291421794|gb|EFE95041.1| alanine racemase [Serratia odorifera DSM 4582]
          Length = 257

 Score =  236 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 19/268 (7%)

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
           + S  QL   ++           L++++G NRLG +          +   +      ++S
Sbjct: 1   MHSDWQLAAIAEAQ-LSAPLAVYLKINSGMNRLGFAPARLPQVWQQAQQIRNIAAITLMS 59

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
           H A AD P       Q+       +        LA+S+  L  P  H    RPGI LYG 
Sbjct: 60  HFATADGPQGVT--QQMATIDAAAAALPLPRC-LANSAATLWHPATHGSWVRPGIVLYGA 116

Query: 223 TDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
           +            +Q  ++  + II ++    G+ V YG +   +    I + A GYADG
Sbjct: 117 SPSGQWRDIAETGLQPTMSLRSEIIALQTLQPGDRVGYGWRYAASAVQRIGIVACGYADG 176

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
           YP                G   ++ G +   +G ++MDM   D+T      +G  ++++G
Sbjct: 177 YPRHA-----------PSGTPVWVDGVLTRTVGTVSMDMLAVDLTSCPQASIGTPVELWG 225

Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYA 366
             + +D+VA A+GT  Y+LL  +  R  
Sbjct: 226 RHLPVDEVAAAAGTLGYELLTALAQRVP 253


>gi|170024003|ref|YP_001720508.1| alanine racemase [Yersinia pseudotuberculosis YPIII]
 gi|169750537|gb|ACA68055.1| alanine racemase [Yersinia pseudotuberculosis YPIII]
          Length = 409

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 146/364 (40%), Gaps = 38/364 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I   AL  N   M  L  N +   A++K +AYG     + P +    VQ   V S 
Sbjct: 45  AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 104

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSH 122
           +E   +R      ++  +      + +     ++  +I       QL   +KL   G   
Sbjct: 105 QELKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLN--GKVL 162

Query: 123 PYALQVDT-GFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L +++ G +R GL + +A  L+        K   +  I+SH        +      L
Sbjct: 163 RIHLALNSAGMSRNGLEVSKARGLNDAKTIVGLKNLTIVGIMSHYPV---EDASEIKADL 219

Query: 180 ERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            RF+              + I+  +A++   L  P+    + R G   YG T     S  
Sbjct: 220 ARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTI---ASTE 276

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S       
Sbjct: 277 YKRVMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN------ 330

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   I+G  +P+LGK +M+  M D+TD   + +GD + +FG     +I+ +++ 
Sbjct: 331 -----AGHVIIQGQRLPVLGKTSMNTVMVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIE 385

Query: 348 LASG 351
             SG
Sbjct: 386 DLSG 389


>gi|20137378|sp|Q8ZFL4|ALR2_YERPE RecName: Full=Alanine racemase 2
          Length = 394

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 146/364 (40%), Gaps = 38/364 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I   AL  N   M  L  N +   A++K +AYG     + P +    VQ   V S 
Sbjct: 30  AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 89

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSH 122
           +E   +R      ++  +      + +     ++  +I       QL   +KL   G   
Sbjct: 90  QELKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLN--GKVL 147

Query: 123 PYALQVDT-GFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L +++ G +R GL + +A  L+        K   +  I+SH        +      L
Sbjct: 148 RIHLALNSAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPV---EDASEIKADL 204

Query: 180 ERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            RF+              + I+  +A++   L  P+    + R G   YG T     S  
Sbjct: 205 ARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTI---ASTE 261

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S       
Sbjct: 262 YKRVMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN------ 315

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   I+G  +P+LGK +M+  + D+TD   + +GD + +FG     +I+ +++ 
Sbjct: 316 -----AGHVIIQGQRLPVLGKTSMNTVIVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIE 370

Query: 348 LASG 351
             SG
Sbjct: 371 DLSG 374


>gi|22125742|ref|NP_669165.1| alanine racemase [Yersinia pestis KIM 10]
 gi|108812106|ref|YP_647873.1| alanine racemase [Yersinia pestis Nepal516]
 gi|145599043|ref|YP_001163119.1| alanine racemase [Yersinia pestis Pestoides F]
 gi|149366357|ref|ZP_01888391.1| putative alanine racemase [Yersinia pestis CA88-4125]
 gi|153950742|ref|YP_001400629.1| alanine racemase [Yersinia pseudotuberculosis IP 31758]
 gi|165925439|ref|ZP_02221271.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938444|ref|ZP_02227001.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008560|ref|ZP_02229458.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166210808|ref|ZP_02236843.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167422631|ref|ZP_02314384.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426368|ref|ZP_02318121.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468736|ref|ZP_02333440.1| alanine racemase [Yersinia pestis FV-1]
 gi|218928815|ref|YP_002346690.1| alanine racemase [Yersinia pestis CO92]
 gi|229841680|ref|ZP_04461838.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843797|ref|ZP_04463940.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229894540|ref|ZP_04509722.1| putative alanine racemase [Yersinia pestis Pestoides A]
 gi|229902427|ref|ZP_04517546.1| putative alanine racemase [Yersinia pestis Nepal516]
 gi|270490394|ref|ZP_06207468.1| alanine racemase [Yersinia pestis KIM D27]
 gi|294504124|ref|YP_003568186.1| alanine racemase [Yersinia pestis Z176003]
 gi|21958663|gb|AAM85416.1|AE013788_2 putative alanine racemase [Yersinia pestis KIM 10]
 gi|108775754|gb|ABG18273.1| alanine racemase [Yersinia pestis Nepal516]
 gi|115347426|emb|CAL20330.1| putative alanine racemase [Yersinia pestis CO92]
 gi|145210739|gb|ABP40146.1| alanine racemase [Yersinia pestis Pestoides F]
 gi|149290731|gb|EDM40806.1| putative alanine racemase [Yersinia pestis CA88-4125]
 gi|152962237|gb|ABS49698.1| alanine racemase [Yersinia pseudotuberculosis IP 31758]
 gi|165913559|gb|EDR32179.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922548|gb|EDR39699.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992942|gb|EDR45243.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207988|gb|EDR52468.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166958478|gb|EDR55499.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167054723|gb|EDR64527.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229680473|gb|EEO76570.1| putative alanine racemase [Yersinia pestis Nepal516]
 gi|229689405|gb|EEO81468.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694143|gb|EEO84191.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229703559|gb|EEO90576.1| putative alanine racemase [Yersinia pestis Pestoides A]
 gi|262362240|gb|ACY58961.1| alanine racemase [Yersinia pestis D106004]
 gi|262366174|gb|ACY62731.1| alanine racemase [Yersinia pestis D182038]
 gi|270338898|gb|EFA49675.1| alanine racemase [Yersinia pestis KIM D27]
 gi|294354583|gb|ADE64924.1| alanine racemase [Yersinia pestis Z176003]
 gi|320014832|gb|ADV98403.1| putative alanine racemase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 409

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 146/364 (40%), Gaps = 38/364 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I   AL  N   M  L  N +   A++K +AYG     + P +    VQ   V S 
Sbjct: 45  AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 104

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSH 122
           +E   +R      ++  +      + +     ++  +I       QL   +KL   G   
Sbjct: 105 QELKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLN--GKVL 162

Query: 123 PYALQVDT-GFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L +++ G +R GL + +A  L+        K   +  I+SH        +      L
Sbjct: 163 RIHLALNSAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPV---EDASEIKADL 219

Query: 180 ERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            RF+              + I+  +A++   L  P+    + R G   YG T     S  
Sbjct: 220 ARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTI---ASTE 276

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S       
Sbjct: 277 YKRVMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN------ 330

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   I+G  +P+LGK +M+  + D+TD   + +GD + +FG     +I+ +++ 
Sbjct: 331 -----AGHVIIQGQRLPVLGKTSMNTVIVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIE 385

Query: 348 LASG 351
             SG
Sbjct: 386 DLSG 389


>gi|108807830|ref|YP_651746.1| alanine racemase [Yersinia pestis Antiqua]
 gi|167401740|ref|ZP_02307231.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|108779743|gb|ABG13801.1| putative alanine racemase [Yersinia pestis Antiqua]
 gi|167048845|gb|EDR60253.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 409

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 146/364 (40%), Gaps = 38/364 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I   AL  N   M  L  N +   A++K +AYG     + P +    VQ   V S 
Sbjct: 45  AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 104

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSH 122
           +E   +R      ++  +      + +     ++  +I       QL   +KL   G   
Sbjct: 105 QELKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLN--GKVL 162

Query: 123 PYALQVDT-GFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L +++ G +R GL + +A  L+        K   +  I+SH        +      L
Sbjct: 163 RIHLALNSAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPV---EDASEIKADL 219

Query: 180 ERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            RF+              + I+  +A++   L  P+    + R G   YG T     S  
Sbjct: 220 ARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTI---ASTE 276

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S       
Sbjct: 277 YKRVMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN------ 330

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   I+G  +P+LGK +M+  + D+TD   + +GD + +FG     +I+ +++ 
Sbjct: 331 -----AGHVIIQGQRLPVLGKTSMNTVIVDVTDMKKVSLGDEVVLFGKQGNAEIQAEEIE 385

Query: 348 LASG 351
             SG
Sbjct: 386 DLSG 389


>gi|51596715|ref|YP_070906.1| alanine racemase [Yersinia pseudotuberculosis IP 32953]
 gi|51589997|emb|CAH21630.1| putative alanine racemase [Yersinia pseudotuberculosis IP 32953]
          Length = 409

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 146/364 (40%), Gaps = 38/364 (10%)

Query: 7   LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             L+I   AL  N   M  L  N +   A++K +AYG     + P +    VQ   V S 
Sbjct: 45  AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 104

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSH 122
           +E   +R      ++  +      + +     ++  +I       QL   +KL   G   
Sbjct: 105 QELKMVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLN--GKVL 162

Query: 123 PYALQVDT-GFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L +++ G +R GL + +A  L+        K   +  I+SH        +      L
Sbjct: 163 RIHLALNSAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPV---EDASEIKADL 219

Query: 180 ERFRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
            RF+              + I+  +A++   L  P+    + R G   YG T     S  
Sbjct: 220 ARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYGDTI---ASTE 276

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
            + V+T ++ I  +     G  V Y     L RDSL+A   +GYADGY    S       
Sbjct: 277 YKRVMTFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN------ 330

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                 G   I+G  +P+LGK +M+  + D+TD   + +GD + +FG     +I+ +++ 
Sbjct: 331 -----AGHVIIQGQRLPVLGKTSMNTVIVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIE 385

Query: 348 LASG 351
             SG
Sbjct: 386 DLSG 389


>gi|50954713|ref|YP_062001.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951195|gb|AAT88896.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 370

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 141/383 (36%), Gaps = 48/383 (12%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    R  +DL AL+ N  ++  L   A T   VK +AYG G   IA A   AG     V
Sbjct: 8   AEPLPRAVVDLAALRRNVATLTRLIAPAETMLAVKADAYGHGLLPIAEAGVQAGATSLAV 67

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
             +  G+ LR       +           +   + ++   IS+  QL   +   +   + 
Sbjct: 68  LEISAGLVLRRAGVTVPLLAWLHGTGTDWRAGIENDIQLGISARWQLEAIA-AAAADRAA 126

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQL 179
              L+VDTG +R G + +E       +   +   + +L    SHLA A           L
Sbjct: 127 IVHLKVDTGLSRNGATREEWPALVDAALALQETGVVRLRAAWSHLADASIADDEAA---L 183

Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231
             FR  ++  +   A      LA+SS  +  P   F L R GI+ YG +   +       
Sbjct: 184 AEFREAVAEAEARGARFEMLHLAASSAGIRMPEARFALVRFGIAAYGLSPFDDTTGAELG 243

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+  EA +I +        V      +           IG+ADG P           
Sbjct: 244 LRPVMRLEAPVIAVH-------VDGTTHVR---------LGIGFADGVP----------- 276

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347
                     + G   P++  +  D  + D   +  +E GD   +FGP    +   ++ A
Sbjct: 277 TLGLARTSVLLGGRRCPVI-AVEADAMLVD-AGAQRVERGDTAVLFGPGDSGEATAEEYA 334

Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370
             +GT   +++  +  R  + Y 
Sbjct: 335 EWAGTIADEMVTGVAARVPRVYV 357


>gi|288960918|ref|YP_003451257.1| alanine racemase [Azospirillum sp. B510]
 gi|288913226|dbj|BAI74713.1| alanine racemase [Azospirillum sp. B510]
          Length = 389

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 132/360 (36%), Gaps = 29/360 (8%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L+   R   VVK NAYG G   ++ AL  AG+  F V S +EG  LR     A I V+  
Sbjct: 33  LAPTTRILGVVKANAYGHGAVAVSRALERAGIDGFAVDSPDEGTALRDAGIAAPILVMNP 92

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDT-----GFNRLGLSL 139
           + PG    +    L   +S               G      ++V       G + LG   
Sbjct: 93  LCPGDAPALVAAGLTAAVSDGEAAQALDDAARRAGGVAGLHVRVRADADGMGGDGLGTGG 152

Query: 140 QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK-----GIEA 194
                           ++  + +H+             ++  FR L+             
Sbjct: 153 DGVAPLLRALHRFANLRVEGLFTHMIGPYRDDPVQIGREIAGFRGLLGRLPADVPRPPLI 212

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGE 252
             A+S G+   P   F + R G  LYG    +      P + V+   +RI  + +   G+
Sbjct: 213 HAATSPGLFNAPGARFDMVRLGAVLYGIRMVEAGGAPFPFRPVMELVSRIAHLGRLEPGD 272

Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312
            + YG   +       A+  +GYAD  P  L+          F      I+G   P++G+
Sbjct: 273 DIGYGPAARRRTGGRAAMIPMGYAD-LPFLLN----------FRDTAVLIRGRRAPLIGE 321

Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368
             M   + D+TD    E+GD +   G      I ++D+  A+G     +L  +G R A+ 
Sbjct: 322 AFMGKVLADVTDIPEAELGDEVVFVGAQGMESITVEDIGKANGIRPSAIL-MLGPRVARR 380


>gi|317133108|ref|YP_004092422.1| alanine racemase [Ethanoligenens harbinense YUAN-3]
 gi|315471087|gb|ADU27691.1| alanine racemase [Ethanoligenens harbinense YUAN-3]
          Length = 364

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 130/346 (37%), Gaps = 23/346 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           L +    +  N  +M   + N     V+K NAYGLG  ++A  L   A V  F V+ +EE
Sbjct: 4   LVVQTGHILANLEAMRKHT-NVPVIPVLKGNAYGLGDVEVARLLREKADVHLFAVSRLEE 62

Query: 68  GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125
             +L+   P   IF+L       + + I    L   + S       + L    G      
Sbjct: 63  AKRLKEALPDEEIFLLSPYGTEKEAEEIVRLGLTATVGSYGSAVLLNGLSEKAGTRCRVH 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L+ DTG  R G   +EA      +   K  +++   SH + +          QL+R +  
Sbjct: 123 LKFDTGLGRSGFLPEEAEKAVQAAKYLKNLEIAGCFSHFSNSFGKDEKGVRTQLDRLQHC 182

Query: 186 ISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           ++  K  G+E     +A+S+  +L P+      R G +L G     NK   +  V   E 
Sbjct: 183 VAALKNAGVEPGMLHIAASNAAILYPSARLDAVRCGSALLGRVGVRNK-LGLHKVGRLEC 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT------------LSGLDS 288
            I  +R   AG  V YG      + + IA    GYADG  L               G   
Sbjct: 242 PISDVRWLPAGHNVGYGNTYTTKKPARIATIQAGYADGLFLQKMRDAFRTRDILRDGWHD 301

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
             +          I G    +LG++ M   + D+++      GD  
Sbjct: 302 FRALFRRPSLHCTINGQPARLLGRVGMCTVVADVSNI-QCGAGDMA 346


>gi|241767429|ref|ZP_04765128.1| alanine racemase [Acidovorax delafieldii 2AN]
 gi|241361801|gb|EER58070.1| alanine racemase [Acidovorax delafieldii 2AN]
          Length = 270

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 103/266 (38%), Gaps = 14/266 (5%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I  +AL +N   +     +A+T AVVK NAYG G E++   L       F +  
Sbjct: 11  RPIHATIHASALHHNLERVRQAVPDAKTWAVVKANAYGHGIERVFEGLRA--ADGFALLD 68

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++E  ++R    +  I +L G+  P   ++     L   +    Q+   +      V H 
Sbjct: 69  LDEAERVRHLGWRGPILLLEGVFEPRDLELCSRLGLWHAVHCDEQIDMLAAH-KTQVPHR 127

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L++++G NRLG + Q                    ++H + AD P     + Q++ F 
Sbjct: 128 VFLKLNSGMNRLGFTPQRYRSAWARLNALPQVDEISFMTHFSDADGPRGI--AHQVQTFN 185

Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTD----KINKSHPMQTVV 236
                  G E S+ +S+  L             R GI LYG              +Q  +
Sbjct: 186 AATQDLPG-ERSICNSAATLRHAGDAQVRGDWVRAGIVLYGSAPDHPEHTAAQWDLQPSM 244

Query: 237 TAEARIILIRKALAGELVSYGGQKKL 262
           T   RII  ++  AG+ V YG +   
Sbjct: 245 TLATRIIGTQQLQAGDTVGYGSRFTA 270


>gi|160894017|ref|ZP_02074796.1| hypothetical protein CLOL250_01572 [Clostridium sp. L2-50]
 gi|156864395|gb|EDO57826.1| hypothetical protein CLOL250_01572 [Clostridium sp. L2-50]
          Length = 381

 Score =  228 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 84/359 (23%), Positives = 146/359 (40%), Gaps = 25/359 (6%)

Query: 1   MHSNE---FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           M   E      L I   AL NN   +  L+  A+  AV+K NAYGLG  K A  L + G+
Sbjct: 9   MKPEELEDMTTLTIKTNALDNNIRIIKRLANGAKVIAVLKGNAYGLGLTKFASFLQSKGI 68

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLM 116
            ++ VT + + V LR       I ++  ++  ++     D ++   I+S        +  
Sbjct: 69  DNYGVTELSDAVTLRRNGITGNILLMTPLYNSEDITTAIDHDITLSITSTDCAHVIDETA 128

Query: 117 SCGVS--HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           +          L +DTGF R G    +     +   + +  +++ I SH   A   + + 
Sbjct: 129 AYMNHPTVHAHLCIDTGFGRYGFLCSDEKQIANTIQSLRHIKITGIFSHFHAAACRNEYY 188

Query: 175 NSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
              Q + F  L    +  G+      ++SS+ ++  P+ +    R G +  G     N  
Sbjct: 189 VKKQFQDFTHLCDALRKDGVPVGIRHISSSTSMIKYPSMNLDAIRIGSAFLGRLAVPN-D 247

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL-----TLS 284
           +  + V    A +  I +  AG  + YG   KL+ ++  AV + GY  G  +     + +
Sbjct: 248 YGFREVCNLSAYVDDIYELPAGHNIGYGHSFKLSHNAKTAVISAGYYHGLGMERHTDSRT 307

Query: 285 GLDSEHSPSVFLGG-------KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
              S       L G           K Y +P+LG+I+M+  + D T   +I VGD +  
Sbjct: 308 NFFSPIRIYYKLKGTFHKKTPAASFKDYRLPVLGQISMNSVIVDTTGC-NISVGDTVTF 365


>gi|309806961|ref|ZP_07700943.1| alanine racemase [Lactobacillus iners LactinV 03V1-b]
 gi|308166581|gb|EFO68778.1| alanine racemase [Lactobacillus iners LactinV 03V1-b]
          Length = 265

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 101/265 (38%), Gaps = 28/265 (10%)

Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           G      L +D+G  R+G +  +A L       +     +  + +H + AD         
Sbjct: 11  GTKLKIHLAIDSGMGRIGFNEDDAFLKANDYLLSHPEYDVEGMFTHFSTADCHDLEYFDS 70

Query: 178 QLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KINK 228
           Q+++F         K       +S+  +        L R GI++YG          +I  
Sbjct: 71  QVKKFDHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQP 130

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288
              +Q  +   + ++ +++  A   V YG   K   D  I    +GYADG+  ++ G   
Sbjct: 131 KFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF-- 188

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD--- 345
                     K  +     PI+G++ MD  M  + + + +  G  +++   D K  +   
Sbjct: 189 ----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNIK 236

Query: 346 -VALASGTTNYDLLVRIGTRYAKFY 369
            VA  + T +Y++   +  R  + Y
Sbjct: 237 AVADYANTIHYEIACLLSDRVPREY 261


>gi|58039646|ref|YP_191610.1| alanine racemase [Gluconobacter oxydans 621H]
 gi|58002060|gb|AAW60954.1| Alanine racemase [Gluconobacter oxydans 621H]
          Length = 257

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 88/230 (38%), Positives = 126/230 (54%), Gaps = 2/230 (0%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            RL +DL A+ +N+  +  L+  A  AAVVK +AYGLG E++AP L NAG  DFFV  V+
Sbjct: 17  ARLTVDLDAIASNYRYLQTLASGASCAAVVKADAYGLGIERVAPVLENAGATDFFVAHVD 76

Query: 67  EGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-Y 124
           EG++LR     +ARI VL+G  PG         L PV++S+ Q+  +    S   + P  
Sbjct: 77  EGIRLRSVVSEKARITVLHGPRPGASADCVRYGLRPVLNSLEQIALWRDEGSRTDALPEA 136

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
           ALQVD+G +R GLS  +      +       ++ L++SHLACAD P    N  Q +R   
Sbjct: 137 ALQVDSGMSRFGLSDADLETLQADKGLVDGLKVGLVMSHLACADTPDHPANQAQKDRLLQ 196

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
           + +       SL++SSGI LG +YH  + RPG +LYG        +P+  
Sbjct: 197 MSARLPPAPLSLSASSGIFLGTDYHLDVVRPGAALYGIAPNRTGPNPLSP 246


>gi|149194319|ref|ZP_01871416.1| alanine racemase [Caminibacter mediatlanticus TB-2]
 gi|149135494|gb|EDM23973.1| alanine racemase [Caminibacter mediatlanticus TB-2]
          Length = 331

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 146/372 (39%), Gaps = 66/372 (17%)

Query: 9   LKIDLT--ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
             I L    L  N   +++++ N    AV+KDNAYG G   I+  L   G++   V +++
Sbjct: 2   ATIYLNKTNLFYNLQKISSINPN--IIAVIKDNAYGHGIISISKLLKEYGIKKVCVRNID 59

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E   +R       I +     P     I   N    I+S+ Q       +         L
Sbjct: 60  EANLVR--GFFEEILIFN--SPTNRGAI---NFSYTINSLTQ-------LKKNRHPYIHL 105

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++DTGF R G+ L+  LD   +   KK  +L  + SH  CAD+       +Q ++F  + 
Sbjct: 106 KIDTGFRRNGI-LENELDEALDLIKKKEFELRGVFSHFCCADEFGCDTF-IQYDKFLKIK 163

Query: 187 SH---------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
                       K     +A+S+ +   P+      RPGI++YGG D        + V++
Sbjct: 164 EKIVKFCKESKLKIPYFHIANSAALNKLPHT-LDYVRPGIAIYGGID------GYKPVMS 216

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            EA ++ +R     E   Y           I+   +GYADG P   +G   + + +    
Sbjct: 217 LEADVVSVRVLDEKEGCGYNKTFMSDDKIKISTVDVGYADGIPYFRNGCKLKDTIA---- 272

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD--YIQIFGPDIKLDDVALASGTTNY 355
                       LGKI+MD  +           G+   + IF     + +      T  Y
Sbjct: 273 ------------LGKISMDYMIVK---------GEFKKVIIFDD---VKEFVKNFDTITY 308

Query: 356 DLLVRIGTRYAK 367
           D+LV++  R  +
Sbjct: 309 DILVKMSPRIKR 320


>gi|50254060|gb|AAT72154.1| alanine racemase [Borrelia hermsii]
          Length = 326

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 133/333 (39%), Gaps = 23/333 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I L  L +N  S      +    A +K +AYG G  +    L   GV  F +  +++ 
Sbjct: 7   IIITLQNLNHNLTSNKNPYSSRELVATLKSDAYGHGLIQTFKFLKEKGVNYFGLFWIDDA 66

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127
           +KL+       I +         K +   N+ P ++    L+   +            L+
Sbjct: 67  LKLKKIDKNVNILLYINTDKNAIKNLVKFNITPFVADSQYLSLIEQECRKQNKKIKAHLK 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VD G NR G+ +++AL+      N K  +   I +HL   +  ++ +   Q+E+F   I+
Sbjct: 127 VDVGMNRYGIKIEDALNLAIQIQNSKSIEFEGICTHLPTTE--NTKITQTQIEKFVYFIN 184

Query: 188 HYKGIEA-----SLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPM---QTVVTA 238
             K           ++S  I        F + RPG+ LYG     N S+     + V+  
Sbjct: 185 KLKSKNINPKFIHASNSEHIANYKISEKFNMVRPGLILYGYHPNPNISNNNLQLKPVLNL 244

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            ++II ++    GE +SY G      D  I +  +GY DG P   S              
Sbjct: 245 YSKIIFLKNIKKGEQISYSGLFTAKEDMQIGLIPVGYFDGIPQNTSN-----------NF 293

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331
              I+     I GKI M++++ +I   L I +G
Sbjct: 294 YCIIRDRKCFIKGKICMNISIIEIPKDLKINIG 326


>gi|152993699|ref|YP_001359420.1| alanine racemase [Sulfurovum sp. NBC37-1]
 gi|226711065|sp|A6QC54|ALR_SULNB RecName: Full=Alanine racemase
 gi|151425560|dbj|BAF73063.1| alanine racemase [Sulfurovum sp. NBC37-1]
          Length = 336

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 148/370 (40%), Gaps = 47/370 (12%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              + I+     +N + +   +G+    A+V KDNAYG G + +A      G++   V S
Sbjct: 1   MATIIINKENFYHNLNQIALKTGSVEKIAIVLKDNAYGHGLQLMASLSAEFGIRHAVVRS 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +EE   ++       + VL       +  + D      ++ +  +       +  +    
Sbjct: 61  MEEAKNIKELFRT--VLVLG------DHAVKDDICSFALNCLNDIE------NAELGARV 106

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG +R G++ +E L+       KK  +L  +++H   AD+  S +   Q ++F +
Sbjct: 107 ELKVDTGMHRNGIAPEE-LERALQMIQKKDLELVGVMTHFRSADEMGSELFWQQ-KQFAS 164

Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVT 237
           +    K      +     +S+  L    +   L R GI  YG      +    P++ V++
Sbjct: 165 VKERVKEAGFMNVRFHSHNSAATLRSKTFDEDLVRVGIGAYGYNELPDVFDDIPLKPVLS 224

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A+ I  R+   GE V YGG      +  ++   +GY DG+    S             
Sbjct: 225 LSAKKIATRRLKKGERVGYGGDFTAPEEMTVSTYDLGYGDGWCRGDS------------- 271

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
              +I    +PILG+++MD  + +     S +    + I     K    A   GT +Y++
Sbjct: 272 AHPYITAEGLPILGRVSMDFIILE-----SAKE--ELVIMNDAQKA---ARQFGTISYEM 321

Query: 358 LVRIGTRYAK 367
              +     +
Sbjct: 322 TTALSINIER 331


>gi|213581079|ref|ZP_03362905.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 240

 Score =  222 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 104/247 (42%), Gaps = 17/247 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              ++V++G NRLG   + A          +      ++SH A AD P         E  
Sbjct: 119 DIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIG-----EAM 173

Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236
           R +    +G++   SL++S+  L  P  H+   RPGI LYG +            ++ V+
Sbjct: 174 RRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVM 233

Query: 237 TAEARII 243
           T  + II
Sbjct: 234 TLSSEII 240


>gi|10802761|gb|AAG23602.1|AF244653_1 alanine racemase [Carboxydothermus hydrogenoformans]
          Length = 232

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 105/234 (44%), Gaps = 20/234 (8%)

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
            +  +L     +  Y L++DTG  R+G   +E L+        K  +   + +H A AD+
Sbjct: 11  AYQERLERLKKTLFYHLKIDTGMGRIGFWYEE-LEKIEEVLKLKNLEAEGVYTHFARADE 69

Query: 170 PSSHVNSVQLERFRTLISHYK--GIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
                + +Q+ERF  ++ H K  GIE      A+S+ I+  P  H+ L RPGI LYG   
Sbjct: 70  QDLSFSKLQIERFNIVLKHLKAKGIEVKYRHAANSAAIMRLPEAHYDLVRPGIMLYGEYP 129

Query: 225 K---INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                 +   ++  +T +AR+  ++K  AG  VSYG     ++ +LI    +GYADGY  
Sbjct: 130 SRDVPRELAHLKPALTLKARVSQVKKVPAGFTVSYGSTYVTSKATLIVSLPLGYADGYFR 189

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335
            LS             G   I G    I G++ MD  M    ++  +  GD   
Sbjct: 190 RLSNR-----------GVVLINGKRWSITGRVCMDQLMVRWDETERVLPGDEAV 232


>gi|154174920|ref|YP_001408670.1| alanine racemase [Campylobacter curvus 525.92]
 gi|226711031|sp|A7GZM8|ALR_CAMC5 RecName: Full=Alanine racemase
 gi|112802113|gb|EAT99457.1| alanine racemase [Campylobacter curvus 525.92]
          Length = 337

 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 149/372 (40%), Gaps = 48/372 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ++++  A  +N   ++  +G   R   V+KDNAYG G + IA A    G++   V S  E
Sbjct: 4   IRLNKKAYIHNLMQISNKAGGKERVMLVLKDNAYGHGAKLIAAAASEFGIKFCAVKSQSE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            ++++    +  I +L  I  G E    D N I  I+ +        L          L 
Sbjct: 64  ALEIQRNFEK--ILILSHIANGDE----DQNFIYAINDM------KGLNRIKRGTRIHLV 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DT  +R GL   E L+       ++   L    +H   +D+ ++    VQ + F+   +
Sbjct: 112 IDTNMHRNGLKFSE-LEAAFGPIKERGLALEGAYTHFRASDEMNADYF-VQRQNFKEAKA 169

Query: 188 HYKGIEASLA---------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
               +    A         +S+ +     +   + R GI+ +G   + + S  ++ V++ 
Sbjct: 170 EILRLCEKFAMPHPIFHSHNSAALERFGEFDDDMVRVGIAQHGYA-QFDDSLNLKPVLSL 228

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A+ +  R   AG+ V YG +    +D  IA   +GY DG        +           
Sbjct: 229 WAQKVSERVLKAGQCVGYGAKFCADKDINIATYDLGYGDGLLRYAGDGELP--------- 279

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
                G    +LGK++MD    +       + G+++ +F      +  A    T NYD+L
Sbjct: 280 --LANGK--AMLGKMSMDSFSCE-------DAGEWVCVFDD---ANVWARYFDTINYDIL 325

Query: 359 VRIGTRYAKFYT 370
           V++     + + 
Sbjct: 326 VKLSPNIKRKFV 337


>gi|296272673|ref|YP_003655304.1| alanine racemase [Arcobacter nitrofigilis DSM 7299]
 gi|296096847|gb|ADG92797.1| alanine racemase [Arcobacter nitrofigilis DSM 7299]
          Length = 340

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 144/374 (38%), Gaps = 49/374 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++ I+     +N   ++  +G+    AVV KDNAYG G  +I+      G++   V +
Sbjct: 1   MSKIIINKRNYIHNLDIISKQAGSKEKIAVVLKDNAYGHGIIEISKIAKEFGIKKAVVKN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           ++E +K+  +     I      H       +      VI+S+ Q      +     +   
Sbjct: 61  LKEALKIEDFFEDIIILSEINFHT------YSHTFHIVINSIEQ------IHKIPKNTNV 108

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG +R G+S +  L    +   ++   L+ I++H   AD  +S     Q   FR 
Sbjct: 109 HLKVDTGMHRNGIS-KNQLKEAIDGICRQNLNLTGIMTHHRGADGLNSEFF-WQKRNFRL 166

Query: 185 LISHYKGI---------EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQ 233
           +    K I         +    +S+ +    N+     R GI+ YG  +         ++
Sbjct: 167 VKEEVKRICEQLFLPLPKFHSCNSAALFRTANFDDDFARVGIASYGYFENHPSFDKIDLK 226

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++  A+ +  R     + V YGG  K  ++ +++   IGY DG+         +    
Sbjct: 227 PVLSLWAQKVTTRVLKKNQSVGYGGTYKTDKNIIVSTYDIGYGDGFLRINENQSYKTP-- 284

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
                          +LG+I+MD    D  D         + +F        +A    T 
Sbjct: 285 -----------KGYKVLGRISMDNLSLDSQDE-------EVCMFDD---ARALAKIHNTI 323

Query: 354 NYDLLVRIGTRYAK 367
           +Y+++  + +   +
Sbjct: 324 SYEIVTTLSSELKR 337


>gi|224373382|ref|YP_002607754.1| alanine racemase [Nautilia profundicola AmH]
 gi|223589034|gb|ACM92770.1| alanine racemase [Nautilia profundicola AmH]
          Length = 324

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 141/363 (38%), Gaps = 59/363 (16%)

Query: 14  TALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
             L +N + ++ ++ N    AV+KDNAYG G    +  L   G+    V + +E   ++ 
Sbjct: 9   QNLFDNLNKISKINPN--ILAVIKDNAYGHGIISFSKMLKEWGINKVCVKNNDEAEVIKS 66

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
              +  I       P   +     N    I+S+ Q       +         L++DTG +
Sbjct: 67  LFEEIII-----FFPHTGRSA--KNFSYCINSLKQ-------LKKNRHPYIHLKIDTGMH 112

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS------ 187
           R G+ + E  +      +K+  ++  + +H  C+D+ ++ +  +Q ERF+ + +      
Sbjct: 113 RNGILMDELEEALKIIKDKEF-EVRGVFTHFCCSDETANDMF-IQYERFKKIKNRVEVFC 170

Query: 188 ---HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
                K     +A+S  +   P+  F   RPGI+LYGG +        + V+   A ++ 
Sbjct: 171 KENEIKIPYFHIANSYALDKLPDT-FDYVRPGIALYGGIE------GYKPVMELRADVLS 223

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R    G    Y        D  +    +GY DG P   +G   + + +           
Sbjct: 224 SRILKKGWGCGYNKIYMSDEDIEVTTIDVGYGDGLPYFKNGCKLKDAEA----------- 272

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
                LGKI+MD  +        + V D ++         +      T  YD+LV+I  R
Sbjct: 273 -----LGKISMDSMIIKGCFEKEVVVFDDVK---------EFVKNFDTITYDILVKISPR 318

Query: 365 YAK 367
             +
Sbjct: 319 IKR 321


>gi|283954466|ref|ZP_06371986.1| alanine racemase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794083|gb|EFC32832.1| alanine racemase [Campylobacter jejuni subsp. jejuni 414]
          Length = 328

 Score =  216 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 87/365 (23%), Positives = 145/365 (39%), Gaps = 47/365 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A ++N   +    GN  R   V KDNAYG G + +AP   N GV    V S E 
Sbjct: 4   IKIDQKAYEHNLRYIARKIGNFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEE- 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E   F   L             S++          L+
Sbjct: 63  -EAQEIEEFFENILILSHRPHGNENSKFIYAL----------NDISQIKDYKQGAKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-- 185
           +DTG +R G+  ++ L++          +L+ + +H A AD+ +     VQ E F+    
Sbjct: 112 IDTGMHRNGVCTED-LEYAIGLIQSSNLKLTGMFTHFASADEMNGSFF-VQKENFQKAKK 169

Query: 186 --ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
               ++  +     +S+ +L G     +  R G+  +G  D       ++ V++  A  +
Sbjct: 170 IVKKYFSNLLFHSHNSAALLRGNIPEDEYCRIGLVQFGYGD-----LNLKKVLSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R    G+ + YGG    T+D  +A   +GYADG                + G K  I 
Sbjct: 225 SQRVLRKGQSIGYGGIFTATKDLEVATYDLGYADGLFR-------------YSGKKELIL 271

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    +LGK++MD    + +       G+ I +F      D  A    T +Y++LV++  
Sbjct: 272 GNGKIMLGKMSMDSFSCENS-------GEEICVFND---ADVWADFFHTISYEILVKLNP 321

Query: 364 RYAKF 368
              + 
Sbjct: 322 NIQRV 326


>gi|309789197|ref|ZP_07683790.1| alanine racemase [Shigella dysenteriae 1617]
 gi|308922951|gb|EFP68465.1| alanine racemase [Shigella dysenteriae 1617]
          Length = 200

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 18/210 (8%)

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY 220
           +SH A A+ P     ++   R        +    SL++S+  L  P  HF   R GI LY
Sbjct: 1   MSHFAEAEHPDGISGAM--ARIEQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRLGIILY 57

Query: 221 GGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
           G +         +  ++ V+T  + II ++   AGE V YGG+     +  I + A GYA
Sbjct: 58  GASPSGQWRDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYA 117

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           DGY                 G    + G     +G ++MDM   D+T      +G  +++
Sbjct: 118 DGYSRHA-----------PTGTPVLVDGVRTMTVGTVSMDMMAVDLTPCPQAGIGTPVEL 166

Query: 337 FGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +G +IK+DDVA A+GT  Y+L+  +  R  
Sbjct: 167 WGKEIKIDDVAAAAGTVGYELMCALALRVP 196


>gi|223999109|ref|XP_002289227.1| alanine racemase [Thalassiosira pseudonana CCMP1335]
 gi|220974435|gb|EED92764.1| alanine racemase [Thalassiosira pseudonana CCMP1335]
          Length = 388

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 86/423 (20%), Positives = 147/423 (34%), Gaps = 98/423 (23%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVV---------------KDNAYGLGCEKIAPALYN- 54
           I L+++++N++             VV               K + YG G    A  L   
Sbjct: 1   IHLSSIRHNYN-------------VVQSSAAQQQCQVIVVVKADGYGHGAVMTACHLVER 47

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP----------GQEKIIFDTNLIPVIS 104
            G + F V ++EEGV LR          L    P           + + + +     ++ 
Sbjct: 48  CGAEAFAVATLEEGVALRRA--------LEERFPPSSLAPRRKRAEVERVAERRKEELMG 99

Query: 105 SVPQL----TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-- 158
              ++      Y           +   VD+G  RLG    +     +   +     L   
Sbjct: 100 DQRKIHILLRSYHHSAESTWKCWWHSLVDSGMGRLGFKTDQISADGNTPLSSPTPSLEMP 159

Query: 159 --LIISHLACADDPSSHVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQ 211
              + +H+A A+  S      Q++RFR+L+   +         S  +S+ +L     HF 
Sbjct: 160 FYGMCTHMADANSTS-TYTHSQMDRFRSLLHRVRSAGVAVPTISTDNSAALLTTSLTHFD 218

Query: 212 ------LTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
                   R G ++YG      +   ++ V T  A +  +     GE V Y        D
Sbjct: 219 PNAILGFVRCGGAIYGQRPAFKE---LRAVSTLTATVKHVAVISEGESVGYDRAYVAPMD 275

Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
             IA   +G+ADGYP  L              G+  I+G   P+ G + MDM M ++  +
Sbjct: 276 VRIATLTVGFADGYPRELGNGV----------GRVSIRGSTFPVAGNVCMDMLMVELGPA 325

Query: 326 LS------IEVGDYIQIFGPD-----------IKLDDVALASGTTNYDLLVRIGT-RYAK 367
                   + VGD   ++GP+           + L D+A    TT   L   +   R  +
Sbjct: 326 EDEGAGAHVTVGDIAVLWGPEGMDVENCGNGLVTLADLAATLKTTQSALTCGLDKLRVQR 385

Query: 368 FYT 370
            + 
Sbjct: 386 QFV 388


>gi|330813901|ref|YP_004358140.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486996|gb|AEA81401.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 198

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 14/210 (6%)

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY 220
           +SHLACAD+ +++ N++Q  RF  +   +   + SLA+S GI LG  YH+ + RPGISLY
Sbjct: 1   MSHLACADEKNNNYNNIQKARFEKIKKEFSNCKYSLAASGGIFLGKQYHYDMVRPGISLY 60

Query: 221 GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           GG    +K   ++  V+ +  +  I +   GE + Y       +++  A   IGYADG  
Sbjct: 61  GGKRTFHK--GIKHAVSLKVPVTQINQIKKGESIGYSRTFYTKKNTTTATIPIGYADGLN 118

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGP 339
           + LS             G    KG  +PI+G+++MD+ + D+T   + ++VGD I I+  
Sbjct: 119 IRLSN-----------KGFFLFKGKKIPIIGRVSMDLIILDVTKFKNKVKVGDMIDIYNS 167

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           D  +DD A  +GT  Y ++  +  RY K Y
Sbjct: 168 DYTIDDFAKQTGTIPYRIITCMSQRYDKKY 197


>gi|289422485|ref|ZP_06424328.1| alanine racemase 2 [Peptostreptococcus anaerobius 653-L]
 gi|289157057|gb|EFD05679.1| alanine racemase 2 [Peptostreptococcus anaerobius 653-L]
          Length = 372

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 140/350 (40%), Gaps = 34/350 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           RL IDL AL  N   +  ++G     AVVK++AY  G E+     Y AGV+ F  TS+ +
Sbjct: 13  RLTIDLDALHKNARHLIGMTGGG-LIAVVKNDAYHFGLERAVETFYQAGVRFFATTSLRD 71

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            +++R       IF+L          + D ++   ++S+    F  +         Y L+
Sbjct: 72  SIRIRDLYDDVDIFMLNPCR--DFDSLRDYSITATLASLD---FLRENKDSMHDISYHLE 126

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER--FRTL 185
                 R G   ++ +  T     +   +L  I +H + AD+     NS + E+  +  +
Sbjct: 127 WAGQMRRSGCRSKKEVLETIRLAKESNIKLDGIWTHFSWADEFDQE-NSYEKEKSDWLDI 185

Query: 186 ISHYKGIE----ASLASSSGI----LLGPNYHFQLTRPGISLYGGTDKINKS-HPMQTVV 236
           +   + I         +S+ +    LL  + H    R GISLYG               +
Sbjct: 186 LESAQKIHKFKVVQAQNSASLQRDGLLDNHSH---ARVGISLYGCPPYKGADLTNNHHAL 242

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           T    II I+    GE + Y    K  + S + V  IGY DG                 +
Sbjct: 243 TLSGSIISIKDLEIGESIGYCSSFKADKKSRVGVINIGYGDGLLRK-----------RVM 291

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIKLDD 345
           G    I G   P++  + M  T+  +  D  S++VGD    +G DI + +
Sbjct: 292 GHDVLINGRRYPLVS-MMMSHTIVLLNEDDNSVKVGDQAIFYGQDIPVYE 340


>gi|213617521|ref|ZP_03372347.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 186

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 16/192 (8%)

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVT 237
           F        G + S+A+S GILL P  HF   RPGI LYG +   +K        Q V++
Sbjct: 5   FNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMS 63

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             + +I +R   AGE V YGG     RD+ + V A+GY DGYP                G
Sbjct: 64  LTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSG 112

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               + G  VPI+G++ MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L
Sbjct: 113 TPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYEL 172

Query: 358 LVRIGTRYAKFY 369
           + R+ +R A  Y
Sbjct: 173 ITRLTSRVAMKY 184


>gi|157164787|ref|YP_001466519.1| alanine racemase [Campylobacter concisus 13826]
 gi|226711030|sp|A7ZCL1|ALR_CAMC1 RecName: Full=Alanine racemase
 gi|112800684|gb|EAT98028.1| alanine racemase [Campylobacter concisus 13826]
          Length = 337

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 143/372 (38%), Gaps = 50/372 (13%)

Query: 10  KIDL--TALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +I L   A  +N   +   +G       V+KDNAYG G   IA      G+++  V S  
Sbjct: 3   EIHLNKAAYIHNLTKICDKAGGKENVIVVLKDNAYGHGARLIASEAKKFGIKNCAVKSEC 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E  ++        I +L  +  G E   F   +               L+    +    L
Sbjct: 63  EANEI--ADIFENILILSHVPTGDESAKFTYAI----------NDIDALLKIKENTKINL 110

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            +DTG +R GL + E LD+      ++  +L    +H   +D+ ++    VQ E F    
Sbjct: 111 AIDTGMHRNGLDISE-LDYAFEILARRNLELLGAYTHFRASDELNADYF-VQRENFSAAK 168

Query: 187 SHY---------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237
           +           K       +S+ +        ++ R GI+ YG   + N S  ++ V++
Sbjct: 169 AKILALCDEFGIKKPIFHSHNSAALERASEIKDEMVRVGIAQYGYA-QFNGSLNLKPVLS 227

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A+ +  R   +G+ V YG +     D  +A   +GY DG                 LG
Sbjct: 228 LWAKRVSRRVLKSGQSVGYGAKFIAKDDINVATYDLGYGDGLLR-----------YNGLG 276

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
                 G +  ILGKI+MD            + G+++ +F      +  A   GT NYD+
Sbjct: 277 ELRLANGEL--ILGKISMDSFSCK-------DSGEWVCVF---EDANVWAEFFGTINYDI 324

Query: 358 LVRIGTRYAKFY 369
           LV++     + +
Sbjct: 325 LVKLSPNITRKF 336


>gi|57504964|ref|ZP_00370916.1| alanine racemase, putative [Campylobacter coli RM2228]
 gi|305432037|ref|ZP_07401204.1| alanine racemase [Campylobacter coli JV20]
 gi|57019236|gb|EAL55942.1| alanine racemase, putative [Campylobacter coli RM2228]
 gi|304445121|gb|EFM37767.1| alanine racemase [Campylobacter coli JV20]
          Length = 329

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/366 (23%), Positives = 142/366 (38%), Gaps = 48/366 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KI+  A ++N   +    G+ +R   V KDNAYG G + +AP     GV    V + +E
Sbjct: 4   IKINQKAYESNLKIIAEKIGSFSRLICVFKDNAYGHGAKILAPIASTLGVNFVAVKNEKE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +L  +     I +L     G+E   F   L              K+ +        L+
Sbjct: 64  AYELEDFFDN--ILILSHHPHGKENSKFIYAL----------NDIDKINAYQNDTRIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +R G+ +++  +         L +L  I +H A AD+  +    +Q E+F     
Sbjct: 112 IDTGMHRNGVCVEDLNEALLKIKCSAL-KLEGIFTHFAGADEMDASFF-IQREKFSKAKD 169

Query: 188 H----YKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
                YK +     +S  +         +L R G++ +G  D+      ++ V++  A  
Sbjct: 170 IAKQIYKNLIFHSHNSPALFRAVKIPEDELCRTGLAQFGYGDE-----SLKKVLSLYAHR 224

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +  R+   G+ V YGG    T    IA   +GYADG                   G   +
Sbjct: 225 LSHRELQIGQSVGYGGAFSATEKIKIATYDLGYADGLFR------------YDGKGDLLL 272

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
                 ILGKI+MD            + G  I +F      D  A    T NY++LV++ 
Sbjct: 273 ANKQ-KILGKISMDSF-------SCQDFGKEICVFDN---ADVWADFFNTINYEILVKLH 321

Query: 363 TRYAKF 368
               + 
Sbjct: 322 PDIPRV 327


>gi|297519923|ref|ZP_06938309.1| alanine racemase [Escherichia coli OP50]
          Length = 202

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       + +L G    ++   I   +    + +  QL    +  S        ++
Sbjct: 64  LRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-SLDEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  ++A  F H     K + Q   I+SH A AD+P       QL  F T  
Sbjct: 123 LDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC 182

Query: 187 SHYKGIEASLASSSGILLGPN 207
               G + S+A+S GILL P 
Sbjct: 183 EGKPG-QRSIAASGGILLWPQ 202


>gi|152990104|ref|YP_001355826.1| alanine racemase [Nitratiruptor sp. SB155-2]
 gi|226711055|sp|A6Q1W0|ALR_NITSB RecName: Full=Alanine racemase
 gi|151421965|dbj|BAF69469.1| alanine racemase [Nitratiruptor sp. SB155-2]
          Length = 332

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 158/373 (42%), Gaps = 58/373 (15%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +K+   ALK+N  +++  +G + + AAV+KDNAYG G E  A  +   G++   V + EE
Sbjct: 4   VKLSEKALKHNLETVSKKAGGSDKIAAVLKDNAYGHGIEGFAKKISRLGIKKAVVRTYEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            +K+  + P   I +L    P  +   +  N +  +  +                   L+
Sbjct: 64  ALKIADFFPY--ILILSDT-PRHDSFHYAINDLDTLQVLE------------PGTKVHLK 108

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +R G++L+E ++       K    L+ + +H   AD+ SS +   Q E+++T+  
Sbjct: 109 IDTGMHRNGIALEE-IEKAFELLQKNRAHLTGVFTHFRSADELSSELF-WQNEQWQTVKQ 166

Query: 188 H---------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVV 236
           H          +      A+S+ +           R GI+LYG T  D + +   ++ V 
Sbjct: 167 HVIELIKKYNLQKPLFHAANSAALFRLGC-EDDFARIGIALYGYTELDDLYEPPALEPVA 225

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  A+ I  R+   G  V YGG  +   D +I+    GYADG       ++         
Sbjct: 226 SLWAQKIASRELKKGSRVGYGGVFEAREDMIISTYDAGYADGIFRFQKEIEDG------- 278

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                       ILG+++MD  + +            I IF        +A   GT +Y+
Sbjct: 279 -----------KILGRVSMDSILLEGEKK-------EICIFSD---AKKMARKLGTISYE 317

Query: 357 LLVRIGTRYAKFY 369
           LLV++    ++ +
Sbjct: 318 LLVKMPAHLSRTW 330


>gi|308454191|ref|XP_003089746.1| hypothetical protein CRE_10733 [Caenorhabditis remanei]
 gi|308269018|gb|EFP12971.1| hypothetical protein CRE_10733 [Caenorhabditis remanei]
          Length = 769

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 141/379 (37%), Gaps = 33/379 (8%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            R++ID +AL++N   + A  G+A     AV+K +AYG G E + P +  AGV    + S
Sbjct: 402 ARVEIDRSALESNLRYLLAEMGSASPEVCAVLKSDAYGHGIEHVLPVVLAAGVTAVGIVS 461

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123
             E   +R      RI  +      + +      +   +  +      + +     VS P
Sbjct: 462 NPEARLVRELGFGGRILRVRAATSAEARGALPMAVEEWLGGLAHARALAAIAEAVDVSIP 521

Query: 124 YALQVD-TGFN--RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----HVNS 176
             L ++ TG +   L L    A          +   +  I +H    D            
Sbjct: 522 VHLALNSTGLSKESLDLGASGADAELAGIVASRRLDVRGIAAHFPREDAHDVREGLSAFR 581

Query: 177 VQLERFRTLI--SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
              +R    +      G++   A+S   L  P     L R G +LYG  D    +   + 
Sbjct: 582 ADADRVLEALGPDRAAGVQRHCATSFAALEVPESRLDLVRIGAALYG--DSSAAAPWQRR 639

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +   + +  + +  AG  V Y    +L  ++ IA   +GY DG P +L G         
Sbjct: 640 AMRIVSEVSTVCRYPAGRTVGYERHHRLDAETRIATVPLGYGDGVPRSLGGR-------- 691

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD------DVAL 348
              G   + G  VPI+  + M+    D+T+   +  GD + ++G   + +      ++A 
Sbjct: 692 ---GWALVGGRSVPIVDHLAMNTLAIDVTEIPEVGPGDEVVLYGRQGEAELDGGALELA- 747

Query: 349 ASGTTNYDLLVRIGTRYAK 367
            SG         +G    +
Sbjct: 748 -SGQIAAAAYTGMGRILPR 765


>gi|57237734|ref|YP_178982.1| alanine racemase [Campylobacter jejuni RM1221]
 gi|81819521|sp|Q5HUQ3|ALR_CAMJR RecName: Full=Alanine racemase
 gi|57166538|gb|AAW35317.1| alanine racemase [Campylobacter jejuni RM1221]
 gi|315058345|gb|ADT72674.1| Alanine racemase [Campylobacter jejuni subsp. jejuni S3]
          Length = 328

 Score =  212 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 139/365 (38%), Gaps = 47/365 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   +    G+  R   V KDNAYG G + +AP   N GV    V S E 
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEE- 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E   F   L             S+           L+
Sbjct: 63  -EAQEIEEFFENILILSHRPHGNENSRFIYAL----------NDISQAKKYKQDIKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-- 185
           +DTG +R G+ ++  L+   +       +L+ + +H A AD+       VQ E F+    
Sbjct: 112 IDTGMHRNGICVEN-LEHAIDLIQSSDLKLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169

Query: 186 --ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
               ++  +     +S+ +  G     +  R G+  +G  D       ++ V++  A  +
Sbjct: 170 IVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R    G+ + YGG     +D  +A   +GYADG         +     V   GK    
Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKV--- 276

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                +LGK++MD    + +       G+ I +F      D  A    T NY++LV++  
Sbjct: 277 -----MLGKMSMDSFSCENS-------GEEICVFKD---ADIWADFFHTINYEILVKLNP 321

Query: 364 RYAKF 368
              + 
Sbjct: 322 NIQRV 326


>gi|255024672|ref|ZP_05296658.1| alanine racemase [Listeria monocytogenes FSL J1-208]
          Length = 204

 Score =  212 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 24/216 (11%)

Query: 164 LACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYG 221
            A AD   +     QL +F+T+++  K       +A+S+  LL P   F   R GIS+YG
Sbjct: 1   FATADQLETSYFEQQLAKFQTILTSLKNRPTYVHVANSAASLLQPQIGFDAIRFGISMYG 60

Query: 222 GTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277
            T            ++  +     ++ +++   G+ VSYG     T    +A   IGYAD
Sbjct: 61  LTPSTEIKTSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYAD 120

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           G     SG                + G   PI+G++ MD T+  +      + G  + I 
Sbjct: 121 GLIRHYSGF------------HVLVDGEFAPIIGRVCMDQTIIKLPREF--QTGSKVTII 166

Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G D    I  DD A    T NY++   +  R  + Y
Sbjct: 167 GEDHGNVITADDAAHYLDTINYEVTCLLNERIPRKY 202


>gi|283956250|ref|ZP_06373730.1| alanine racemase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791970|gb|EFC30759.1| alanine racemase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 328

 Score =  212 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 145/365 (39%), Gaps = 47/365 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   +    G+  R   V KDNAYG G + +AP   N GV    V S E 
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEE- 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y +           L+
Sbjct: 63  -EAQEIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKKYKQ------DIKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DTG +R G+ ++  L+   N       +L+ + +H A AD+       VQ E F+    
Sbjct: 112 IDTGMHRNGICVEN-LEHAINLIRSSDLKLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169

Query: 188 ----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
               ++  +     +S+ +  G     +  R G+  +G  +       ++ V++  A  +
Sbjct: 170 IVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGES-----NLKRVLSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R    G+ + YGG     +D  +A   +GYADG         +     V   GK    
Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKV--- 276

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                ILGK++MD    + +       G+ I +F      D  A    T NY++LV++  
Sbjct: 277 -----ILGKMSMDSFSCENS-------GEEICVFKD---ADIWADFFHTINYEILVKLNP 321

Query: 364 RYAKF 368
              + 
Sbjct: 322 NIQRV 326


>gi|148926587|ref|ZP_01810269.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205356390|ref|ZP_03223155.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|145845281|gb|EDK22375.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205345775|gb|EDZ32413.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 328

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 86/366 (23%), Positives = 142/366 (38%), Gaps = 49/366 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   +    G+  R   V KDNAYG G + +AP   N GV    V S E 
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEE- 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E   F   L             S++ +        L+
Sbjct: 63  -EAREIEEFFENILILSHRPHGNENSRFIYAL----------NDISQVKNYKQDIKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-- 185
           +DTG +R G+ ++  L+   N       +L+ + +H A AD+       VQ E F+    
Sbjct: 112 IDTGMHRNGICVEN-LEHAINLIQGSDLKLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169

Query: 186 --ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
               ++  +     +S+ +  G     +  R G+  +G  D       ++ V++  A  +
Sbjct: 170 IVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG-FI 302
             R    G+ + YGG     +D  +A   +GYADG                   GKG  +
Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR--------------YNGKGELV 270

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    +LGK++MD    + +       G+ I +F      D  A    T NY++LV++ 
Sbjct: 271 LGNGKTMLGKMSMDSFSCENS-------GEEICVFKD---ADIWADFFHTINYEILVKLN 320

Query: 363 TRYAKF 368
               + 
Sbjct: 321 PNIQRV 326


>gi|86150261|ref|ZP_01068488.1| alanine racemase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597602|ref|ZP_01100836.1| alanine racemase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562525|ref|YP_002344304.1| alanine racemase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|20137244|sp|Q9PP26|ALR_CAMJE RecName: Full=Alanine racemase
 gi|85839377|gb|EAQ56639.1| alanine racemase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190194|gb|EAQ94169.1| alanine racemase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360231|emb|CAL35026.1| alanine racemase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926139|gb|ADC28491.1| alanine racemase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927545|gb|EFV06878.1| alanine racemase [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 328

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 141/365 (38%), Gaps = 47/365 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   +    G+  R   V KDNAYG G + +AP   N GV    V S E 
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEE- 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E   F   L             S++ +        L+
Sbjct: 63  -EAREIEEFFENILILSHRPHGNENSRFIYAL----------NDISQVKNYKQDIKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-- 185
           +DTG +R G+ ++  L+   N       +L+ + +H A AD+       VQ E F+    
Sbjct: 112 IDTGMHRNGICVEN-LEHAINLIQGSDLKLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169

Query: 186 --ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
               ++  +     +S+ +  G     +  R G+  +G  D       ++ V++  A  +
Sbjct: 170 IVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R    G+ + YGG     +D  +A   +GYADG                + G    + 
Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-------------YNGRGELVL 271

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    +LGK++MD    + +       G+ I +F      D  A    T NY++LV++  
Sbjct: 272 GNGKAMLGKMSMDSFSCENS-------GEEICVFKD---ADIWADFFHTINYEILVKLNP 321

Query: 364 RYAKF 368
              + 
Sbjct: 322 NIQRV 326


>gi|157415162|ref|YP_001482418.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81116]
 gi|226711032|sp|A8FLV4|ALR_CAMJ8 RecName: Full=Alanine racemase
 gi|157386126|gb|ABV52441.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747805|gb|ADN91075.1| Alanine racemase [Campylobacter jejuni subsp. jejuni M1]
 gi|315932613|gb|EFV11544.1| alanine racemase [Campylobacter jejuni subsp. jejuni 327]
          Length = 328

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 145/365 (39%), Gaps = 47/365 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   +    G+  R   V KDNAYG G + +AP   N GV    V S E 
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEE- 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y +           L+
Sbjct: 63  -EAQEIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKKYKQ------DIKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-- 185
           +DTG +R G+ ++  L+   +       +L+ + +H A AD+       VQ E F+    
Sbjct: 112 IDTGMHRNGICVEN-LEHAIDLIRSSDLKLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169

Query: 186 --ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
               ++  +     +S+ +  G     +  R G+  +G  D       ++ V++  A  +
Sbjct: 170 IVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R    G+ + YGG     +D  +A   +GYADG         +     V   GK    
Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKV--- 276

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                +LGK++MD    + +       G+ I +F      D  A    T NY++LV++  
Sbjct: 277 -----MLGKMSMDSFSCENS-------GEEICVFKD---ADIWADFFHTINYEILVKLNP 321

Query: 364 RYAKF 368
              + 
Sbjct: 322 NIQRV 326


>gi|154267917|gb|ABS72053.1| VanTG-like protein [Ruminococcus gauvreauii]
          Length = 570

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 13/231 (5%)

Query: 5   EFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +   +++DL  LK+N  ++  A+    R  AVVK NAYG G  + A  L   GV  F V 
Sbjct: 344 DRAWIEVDLNNLKHNARTLSKAMPPGCRLMAVVKANAYGHGAFETAVCLEQIGVTSFAVA 403

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +++EG+ LR +  +  I +L    P + K +    LI  +   P   +  +L   G    
Sbjct: 404 TIDEGIALRRWGIRGDILILGFTDPSRAKELHRYRLIQTLIDAP---YAKRLARQGYIIR 460

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQLE 180
             +++DTG +RLG  + E  +      ++ L  +  I +HL  AD   +        Q E
Sbjct: 461 SHIKIDTGMHRLGFGVNERSEILRTVRSRNL-NVCGIYTHLCAADSLLEDDVKFTRRQTE 519

Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
            F  L+   K       +  + SS G+L  P       R GISLYG     
Sbjct: 520 VFFELLEWLKEQEVTIPDIHIQSSYGLLNYPELGCSYVRAGISLYGVLSAP 570


>gi|315929851|gb|EFV09014.1| alanine racemase [Campylobacter jejuni subsp. jejuni 305]
          Length = 328

 Score =  211 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 141/365 (38%), Gaps = 47/365 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   +    G+  R   V KDNAYG G + +AP   N GV    V S E 
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEE- 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E   F   L             S++ +        L+
Sbjct: 63  -EAREIEEFFENILILSHRPHGNENSRFIYAL----------NDISQVKNYKQDIKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-- 185
           +DTG +R G+ ++  L+   N       +L+ + +H A AD+       VQ E F+    
Sbjct: 112 IDTGMHRNGICVEN-LEHAINLIQGSDLKLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169

Query: 186 --ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
               ++  +     +S+ +  G     +  R G+  +G  D       ++ V++  A  +
Sbjct: 170 IVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R    G+ + YGG     +D  +A   +GYADG         +     V   GK    
Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKV--- 276

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                +LGK++MD    + +       G+ I +F      D  A    T NY++LV++  
Sbjct: 277 -----MLGKMSMDSFSCENS-------GEEICVFKD---ADIWADFFHTINYEILVKLNP 321

Query: 364 RYAKF 368
              + 
Sbjct: 322 NIQRV 326


>gi|86152054|ref|ZP_01070266.1| alanine racemase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315124401|ref|YP_004066405.1| alanine racemase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|85840839|gb|EAQ58089.1| alanine racemase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018123|gb|ADT66216.1| alanine racemase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 328

 Score =  211 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 145/365 (39%), Gaps = 47/365 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   +    G+  R   V KDNAYG G + +AP   N GV    V S E 
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEE- 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y +           L+
Sbjct: 63  -EAQEIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKKYKQ------DIKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-- 185
           +DTG +R G+ ++  L+   +       +L+ + +H A AD+       VQ E F+    
Sbjct: 112 IDTGMHRNGICVEN-LEHAIDLIQSSDLKLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169

Query: 186 --ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
               ++  +     +S+ +  G     +  R G+  +G  D       ++ V++  A  +
Sbjct: 170 IVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKKVLSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R    G+ + YGG     +D  +A   +GYADG         +     V   GK    
Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKV--- 276

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                +LGK++MD    + +       G+ I +F      D  A    T NY++LV++  
Sbjct: 277 -----MLGKMSMDSFSCENS-------GEEICVFKD---ADIWADFFHTINYEILVKLNP 321

Query: 364 RYAKF 368
              + 
Sbjct: 322 NIQRV 326


>gi|86153256|ref|ZP_01071460.1| alanine racemase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|121613298|ref|YP_001000580.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005511|ref|ZP_02271269.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|226711034|sp|A1VZN9|ALR_CAMJJ RecName: Full=Alanine racemase
 gi|85842982|gb|EAQ60193.1| alanine racemase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87249470|gb|EAQ72430.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 328

 Score =  211 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 145/365 (39%), Gaps = 47/365 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   +    G+  R   V KDNAYG G + +AP   N GV    V S E 
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEE- 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E    ++  I  ++ + Q+  Y +           L+
Sbjct: 63  -EAQEIEEFFENILILSHRPHGNE----NSRFIYALNDISQVKKYKQ------DIKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-- 185
           +DTG +R G+ ++  L+   +       +L+ + +H A AD+       VQ E F+    
Sbjct: 112 IDTGMHRNGICVEN-LEHAIDLIRSSDLKLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169

Query: 186 --ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
               ++  +     +S+ +  G     +  R G+  +G  D       ++ V++  A  +
Sbjct: 170 IVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKKVLSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
             R    G+ + YGG     +D  +A   +GYADG         +     V   GK    
Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKV--- 276

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                +LGK++MD    + +       G+ I +F      D  A    T NY++LV++  
Sbjct: 277 -----MLGKMSMDSFSCENS-------GEEICVFKD---ADIWADFFHTINYEILVKLNP 321

Query: 364 RYAKF 368
              + 
Sbjct: 322 NIQRV 326


>gi|270159739|ref|ZP_06188395.1| alanine racemase [Legionella longbeachae D-4968]
 gi|269988078|gb|EEZ94333.1| alanine racemase [Legionella longbeachae D-4968]
          Length = 861

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 152/405 (37%), Gaps = 52/405 (12%)

Query: 11  IDLTALKNNWHSM---NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           I+  A+K N  ++        +++   V+K N YGLG + ++     AG+    V  ++E
Sbjct: 458 INTKAIKENIKNIISFGKQCSHSKIIGVIKSNGYGLGSKLVSDLAIEAGIDFLAVAKLQE 517

Query: 68  GVKLRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVS- 121
            + LR        R+                  +  +I S      +   +K +      
Sbjct: 518 AIALRNSGIPSTVRLMTFEAPMIYDLSTYAANQIEVIIPSSKNAASINMIAKWLQNKHRV 577

Query: 122 ---HPYALQVDTGFNRLGLSLQEALDFTHNSFNK------KLGQLSLIISHLACADDPSS 172
                  + VDTG  R G       D    + +K         + + + +HLAC      
Sbjct: 578 LGKLKVHIMVDTGLRRDGGYESNIPDSVMETISKLQLLDPNQVEFAGLSTHLACYRCTDY 637

Query: 173 ------HVNSVQLERFRTLISHY--KGIEASLASSSGILLG----PNYHFQ--------- 211
                 +  ++Q  RF  +I     +G++  L    G L          F+         
Sbjct: 638 NGDEIINFRALQFHRFEKVIKFLFSQGVQIPLIHIGGGLALLAEKWPLQFEKFLKEFNVG 697

Query: 212 -LTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDS- 266
             TR G  LYG   + +    S  ++ VV  + ++  +     GE VSYGG  +  +D  
Sbjct: 698 FYTRVGHGLYGMELEKDLHLDSPRLRQVVKMDLQVRNVFYVEEGEPVSYGGYWRAPKDGA 757

Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
            IA  A G+A+G P T   L          G    I  +  PI+GKI M+  M ++    
Sbjct: 758 WIATLAGGWAEGVPRTAQTLG-----EWQHGMMVCINNHQYPIVGKINMNAMMVNLGSLT 812

Query: 327 SIEVGDYIQIFGP---DIKLDDVALASGTTNYDLLVRIGTRYAKF 368
            ++ GD   IFG    + KL+D+A  SG     ++V + T   + 
Sbjct: 813 KVKPGDRAIIFGWSDHEPKLNDLAQLSGQIAPSIMVNVPTSMPRV 857


>gi|118474927|ref|YP_892713.1| alanine racemase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414153|gb|ABK82573.1| alanine racemase [Campylobacter fetus subsp. fetus 82-40]
          Length = 337

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/364 (22%), Positives = 144/364 (39%), Gaps = 48/364 (13%)

Query: 15  ALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73
           A  +N   +++  G+  R  AV+KD+AYG G   +A      G++   V S++E +++  
Sbjct: 10  AYIHNLTQISSKIGSKDRIIAVLKDDAYGHGAVLMAGIASGFGIKWACVKSIDEAIEI-- 67

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
                 I +L  I  G+E   F   +             S L          L +DT  +
Sbjct: 68  SPFFKNIIILSHIPNGKENDEFIYAI----------NDLSGLDVIKSGISVHLAIDTMMH 117

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI- 192
           R G+ + E ++   N    +  ++    +H   +D+ S     VQ   F       K + 
Sbjct: 118 RNGIGIDE-IETAFNIAKNRSIRICGAYTHFRSSDEISGDYY-VQKANFLKAKIKLKSLF 175

Query: 193 --------EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
                        +S+ I     +  +  R GI  +G + + ++S  ++ V++  A  I 
Sbjct: 176 KKNGVDKPMFHSHNSAAIERTNGFDDEFVRAGIVQFGYS-QFDESLNLKKVLSLWADRIS 234

Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
            R   AG+ V YGG     +D  IA   +GY DG     +G    H             G
Sbjct: 235 KRVLKAGQSVGYGGAFTAKKDINIATYDLGYGDGLLR-YNGKGDLH----------LANG 283

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
               ILGK++MD            + GD I +F  D ++   A    T +YD+LV++ ++
Sbjct: 284 EK--ILGKMSMDSF-------SCADSGDQICVF-DDARV--WAKFFDTISYDILVKLSSK 331

Query: 365 YAKF 368
             + 
Sbjct: 332 IKRV 335


>gi|153951186|ref|YP_001398023.1| alanine racemase [Campylobacter jejuni subsp. doylei 269.97]
 gi|226711033|sp|A7H3E3|ALR_CAMJD RecName: Full=Alanine racemase
 gi|152938632|gb|ABS43373.1| alanine racemase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 328

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 142/366 (38%), Gaps = 49/366 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   +    G+  R   V KDNAYG G + +AP   N GV    V S E 
Sbjct: 4   IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEE- 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
                +      I +L     G E   F   L             S++ +        L+
Sbjct: 63  -EAREIEEFFENILILSHRPHGNENSRFIYAL----------NDISQVKNYKQDIKIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-- 185
           +DTG +R G+ ++  L+   +       +L+ + +H A AD+       VQ E F+    
Sbjct: 112 IDTGMHRNGICVEN-LEHAIDLIRSSNLKLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169

Query: 186 --ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243
               ++  +     +S+ +  G     +  R G+  +G  D       ++ +++  A  +
Sbjct: 170 MVKKYFSNLLFHSHNSAALFRGKIPEDEYCRIGLVQFGYGDS-----NLKRILSLYAHRL 224

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG-FI 302
             R    G+ + YGG     +D  +A   +GYADG                   GKG  +
Sbjct: 225 SQRILQKGQSIGYGGIFTAVKDMEVATYDLGYADGLFR--------------YNGKGELV 270

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    +LGK++MD    + +       G+ I +F      D  A    T NY++LV++ 
Sbjct: 271 LGNGKAMLGKMSMDSFSCENS-------GEEICVFKD---ADIWADFFHTINYEILVKLN 320

Query: 363 TRYAKF 368
               + 
Sbjct: 321 PNIQRV 326


>gi|319938192|ref|ZP_08012590.1| alanine racemase [Coprobacillus sp. 29_1]
 gi|319806713|gb|EFW03362.1| alanine racemase [Coprobacillus sp. 29_1]
          Length = 260

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 111/242 (45%), Gaps = 3/242 (1%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEEGV 69
           I L  L++N +++          A++K NAYG G +++A  L +   +  F V +++E +
Sbjct: 17  IRLDYLQDNVNTLYQRVQKP-MMAIIKANAYGHGYQEVANVLKDHEHISMFGVATLKEAI 75

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
            LR    +  I VL  I       + D ++   + S   +    +L          +++D
Sbjct: 76  DLRKLGIEQDILVLGAIPLKDLDFVIDYDITLTLFSKEYMEEIVELYHHEKPVKVHIKID 135

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLISH 188
           TG NR+GL  +   +    ++ K + Q+  + +H A ADDP  +     QL  F  ++  
Sbjct: 136 TGMNRIGLKTKTEFEDVLRNYPKDIFQIDGVFTHFATADDPLQNDAYENQLNMFYDIVGD 195

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
           ++       +S+ ++        L R GI++YG      +S  ++ V++  +R+++I+K 
Sbjct: 196 HQFRYIHCQNSASMMYHHEEKSNLARIGIAMYGVDPAGEESVHLKQVMSLYSRVVMIKKI 255

Query: 249 LA 250
             
Sbjct: 256 KK 257


>gi|322819666|gb|EFZ26693.1| alanine racemase 2, putative [Trypanosoma cruzi]
          Length = 388

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/393 (24%), Positives = 158/393 (40%), Gaps = 44/393 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67
           +++ L  +  N   +  ++G A    +VK NAYG G  K++  L+NA GV  F V S+ E
Sbjct: 7   VEVCLRNIAYNVECIRRIAGKAELIPMVKGNAYGHGMGKVSEYLHNACGVHTFGVASLGE 66

Query: 68  GVKLRLYTP------QARIFVLYGIHPGQEKIIFDT--------NLIPVISSVPQLTFYS 113
            ++L    P      Q  IFV        E               L P++ ++PQL  + 
Sbjct: 67  ALELIESQPSIAEKAQNEIFVFSDTEVLNEGCQSYYQPCGRWAVRLTPILGTLPQLKAFC 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS- 172
              +   S    L+++TG NRLGL   E  +       K+ G + L++ H   A      
Sbjct: 127 ASNAFNNS-KLCLKLETGMNRLGLRFDELEEAV--PILKQRGGVDLLLQHFGIAGSVERL 183

Query: 173 HVNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                  E F+         G+E    S+++S  +           RPGI LYG     +
Sbjct: 184 AETLNHYEAFKNAKKFLHDSGVEVRATSVSNSGAVEQRIGLEETYIRPGIMLYGPRSVTS 243

Query: 228 KSHPMQTVVT-AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           K+       +    +++       GE V Y        DS+I +  IGYADG+  T  G+
Sbjct: 244 KNLWNGKFASCFYTKVLHHFPLRKGEGVGYDLTPV-KADSVIVMLPIGYADGFLCTYKGM 302

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVG---------DYIQI 336
             + +P      +  I      + G+I MDM    +  + +   +G           I++
Sbjct: 303 PIKVTPE--DAAEPIIG----TVHGRINMDMAAVVVYPEEVGKNIGNIMTAVKKESRIRV 356

Query: 337 FGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +G DI  ++ A++ GT  + L   +  R  + Y
Sbjct: 357 WGDDI--EEKAVSVGTIPHQLTCGLSIRVPRIY 387


>gi|241667310|ref|ZP_04754888.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 351

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 82/366 (22%), Positives = 151/366 (41%), Gaps = 29/366 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+   +K+N   +   + +++   +VK NAYG+G E I     +  V  + +  ++E 
Sbjct: 7   VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGIGIENIYKVTNDL-VDAYGIARIDEY 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             L+       I  L GI+          N+IP++S+V  +  Y K      S    L  
Sbjct: 66  YVLKNLGCTKDIVFLSGIYAECFDFKIPKNVIPILSNVLLIKDYIKYEDD-KSKQVMLDF 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA---CADDPSSHVNSVQLERFRTL 185
           D G  R G    + +             + ++ SH+       D S       L     L
Sbjct: 125 DCGMGRFGFYRDDFIKHLDMLKISGFSNI-ILFSHIPTGYNGYDRSKKYIDKIL-----L 178

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
           ++    ++ + ++S   L   ++  +  R   ++ G   +  +   ++  ++ +A II I
Sbjct: 179 LAEETKLKYTFSNSPVSLFDTDFLQEYIRSSSAVLGYDQEPKE---IKFSLSLKACIISI 235

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    GE +SYG +    +D+ +A+  IGYADG      G +  H   +       I   
Sbjct: 236 RDIPKGEYISYGNEYFCNKDTTVAILNIGYADGL-----GCEIHHDSYL------LINAT 284

Query: 306 MVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT 363
             PIL  I MD    DI+     +++ D I++FGP+ + L+  A     T  + L ++  
Sbjct: 285 KCPILS-INMDYLYVDISAIKHQLKMLDMIELFGPNSLSLEQHANMYNITKDEALTKLNA 343

Query: 364 -RYAKF 368
            R  K 
Sbjct: 344 LRVRKI 349


>gi|315636229|ref|ZP_07891483.1| alanine racemase [Arcobacter butzleri JV22]
 gi|315479590|gb|EFU70269.1| alanine racemase [Arcobacter butzleri JV22]
          Length = 340

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 145/371 (39%), Gaps = 51/371 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++ +    L  N   ++  +G+    AVV KDNAYG G  +IA      G++   V +
Sbjct: 1   MAKILLSKENLFYNLDVISKKAGSKEKVAVVLKDNAYGHGLVEIATLAKEFGIKKAVVRT 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHP 123
           +++ +K+        I VL            + +      +    L     +     +  
Sbjct: 61  IDDALKIEKLFDF--ILVL-----------AEKSFHTYSHTFHIALNSLEDIDKLPNNSN 107

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VDTG +R G+  ++ L+      ++K  +++ + +H   AD+ S+     Q E F 
Sbjct: 108 VHIKVDTGMHRNGIYPED-LEKAFLGLSEKNIKVTGVFTHHRGADELSTDFF-WQKENFS 165

Query: 184 TLISHYKGIE---------ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPM 232
            +    K I              +S+ +    N+    TR GI+ YG  D  +      +
Sbjct: 166 LVKKSVKNICEKLFLPIPLFHSCNSAALFRTENFDEDFTRVGIATYGYLDDSDVFNFPKL 225

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++  A  +  R    G+ V YGG    T D L++   +GY DG+   L+   S  +P
Sbjct: 226 KPVMSLWASRLSTRILKKGQSVGYGGTFTTTEDMLVSTYDVGYGDGFLR-LNERKSYTTP 284

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                           +LG+++MD    + TD   + + D +          ++A    T
Sbjct: 285 ------------KGYKVLGRVSMDNLSLN-TDDEKVCIFDDV---------RELAKIHDT 322

Query: 353 TNYDLLVRIGT 363
             Y++   +  
Sbjct: 323 ITYEITTTLNP 333


>gi|88800370|ref|ZP_01115936.1| alanine racemase [Reinekea sp. MED297]
 gi|88776947|gb|EAR08156.1| alanine racemase [Reinekea sp. MED297]
          Length = 369

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 133/355 (37%), Gaps = 28/355 (7%)

Query: 27  SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI 86
             +A   AV+K +AYG G  ++A  +    ++   +TS  E   +R    +  I  L   
Sbjct: 30  PEHAEFCAVLKADAYGHGIAEVAAIVCEHRIKTVGITSNAEARLVREAGFEGTILRLRTA 89

Query: 87  HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT-GFNRLGLSLQE--AL 143
            P +        +   +SS+        L     S    L ++  G +R GL L E    
Sbjct: 90  TPSEIAGAVADRVQEQVSSLYTAEVIDSLTE--HSEGVHLAINAGGMSRDGLELNERDGH 147

Query: 144 DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE-----RFRTLISHYKGIEASLAS 198
           D      +    ++  I +H     +    ++           F       + +     S
Sbjct: 148 DTCQRIVDLLGDRIVGICTHHPSGSEQDLQLSDQHFRSDLNWIFSNTALKREQVNVHAGS 207

Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           S  ++          R G  LYG    +      +  +  +A+I  I     G  + Y  
Sbjct: 208 SLSLISSTPIETDFYRCGAILYGI---LKPELGFEHTMQLKAQITNITTYPQGSTIGYDR 264

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
              LTRDS +A  A+GYA+G+     G                I+G +VP+LGK++M+  
Sbjct: 265 TTTLTRDSRVANIALGYANGFRRNYFGRS-----------HVLIRGQLVPVLGKVSMNTI 313

Query: 319 MFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + D+TD   +EV D + IFG      I +  + + + T   D+    G R  + Y
Sbjct: 314 VADVTDIPVVEVEDEVVIFGHQGTGKIDIKRIEMQADTIMADIYAEWGQRNPRVY 368


>gi|313619768|gb|EFR91373.1| alanine racemase [Listeria innocua FSL S4-378]
          Length = 199

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 24/209 (11%)

Query: 171 SSHVNSVQLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227
            +     QL +F+ ++S    +      A+S+  LL P   F   R GIS+YG T     
Sbjct: 3   ETSYFEQQLAKFQAILSSLTTRPTFVHTANSAASLLQPQIDFDAIRFGISMYGLTPSTEI 62

Query: 228 ---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
                  ++  +     ++ +++   G+ VSYG     T    +A   IGYADG     S
Sbjct: 63  KNSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYS 122

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340
           G                ++G   PI+G+I MD T+  +      + G  + I G D    
Sbjct: 123 GF------------HVLVEGERAPIIGRICMDQTIIKLPREF--QTGTKVTIIGSDHGNK 168

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +  DD A   GT NY++   +  R  + Y
Sbjct: 169 VTADDAAEYLGTINYEVTCLLTERIPRKY 197


>gi|157737037|ref|YP_001489720.1| alanine racemase [Arcobacter butzleri RM4018]
 gi|226711026|sp|A8ESX7|ALR_ARCB4 RecName: Full=Alanine racemase
 gi|157698891|gb|ABV67051.1| alanine racemase [Arcobacter butzleri RM4018]
          Length = 340

 Score =  208 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 144/371 (38%), Gaps = 51/371 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++ +    L  N   ++  +G+    AVV KDNAYG G  +IA      G++   V +
Sbjct: 1   MAKILLSKENLFYNLDVISKKAGSKEKVAVVLKDNAYGHGLVEIATLAKEFGIKKAVVRT 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHP 123
           +++ +K+        I VL            + +      +    L     +     +  
Sbjct: 61  IDDALKIEKLFDF--ILVL-----------AEKSFHTYSHTFHIALNSLEDIDKLPNNSN 107

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             ++VDTG +R G+  ++ L+       ++  +++ + +H   AD+ S+     Q E F 
Sbjct: 108 VHIKVDTGMHRNGIYPED-LEKAFLGLLERNIKVTGVFTHHRGADELSTDFF-WQKENFS 165

Query: 184 TLISHYKGIE---------ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPM 232
            +    K I              +S+ +    N+    TR GI+ YG  D  +      +
Sbjct: 166 LVKKSVKNICEKLFLPIPLFHSCNSAALFRTENFDEDFTRVGIATYGYLDDSDVFNFPKL 225

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V++  A  +  R    G+ V YGG    T D L++   +GY DG+   L+   S  +P
Sbjct: 226 KPVMSLWASRLSTRILKKGQSVGYGGTFTTTEDMLVSTYDVGYGDGFLR-LNERKSYTTP 284

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                           +LG+++MD    + TD   + + D +          ++A    T
Sbjct: 285 ------------KGYKVLGRVSMDNLSLN-TDDEKVCIFDDV---------RELAKIHDT 322

Query: 353 TNYDLLVRIGT 363
             Y++   +  
Sbjct: 323 ITYEITTTLNP 333


>gi|118496926|ref|YP_897976.1| alanine racemase [Francisella tularensis subsp. novicida U112]
 gi|194324153|ref|ZP_03057927.1| alanine racemase, C- domain family [Francisella tularensis subsp.
           novicida FTE]
 gi|118422832|gb|ABK89222.1| alanine racemase [Francisella novicida U112]
 gi|194321600|gb|EDX19084.1| alanine racemase, C- domain family [Francisella tularensis subsp.
           novicida FTE]
          Length = 351

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 150/363 (41%), Gaps = 23/363 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+   +K+N   +   + +++   +VK NAYG+G E I     N  V  + +  +EE 
Sbjct: 7   VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGVGIENIYKV-TNNLVDAYGIARIEEY 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             L+       I  L GI+          N+IP++ +   +  Y K      S    L  
Sbjct: 66  YVLKSLGCTKDIIFLSGIYAECFDFKIPKNVIPILGNELLIKDYIKYEDD-KSKQVMLDF 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D G  R G    + +   +   N     ++ + SH+    +         +++  +L + 
Sbjct: 125 DCGMGRFGFYKDDFIKHLYKLKNAGFSNIT-LFSHIPTGYNGFDKSKKY-IDKILSLATQ 182

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
            K ++ + ++S   L   ++  +  RP  ++ G   +  +   ++  +  +A II IR  
Sbjct: 183 TK-LKYTFSNSPVSLFSYDFQQEYIRPCSAILGYDQEPQE---IKFSLALKACIISIRDI 238

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
             G+ +SY  +    RD+ +A+  IGYADG               +       IK    P
Sbjct: 239 PKGQYISYANEYFCDRDTTVAILNIGYADGL-----------GCKIHKDSYLIIKDTKCP 287

Query: 309 ILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RY 365
           IL  I MD    DI+     +++ D I++FGP+ + L+  A     T  + L ++   R 
Sbjct: 288 IL-AINMDYLYIDISAIKHQLKILDMIELFGPNSLSLEQHASMYNITKDEALTKLNALRV 346

Query: 366 AKF 368
            K 
Sbjct: 347 KKI 349


>gi|289165490|ref|YP_003455628.1| alanine racemase [Legionella longbeachae NSW150]
 gi|288858663|emb|CBJ12558.1| putative alanine racemase [Legionella longbeachae NSW150]
          Length = 861

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 152/405 (37%), Gaps = 52/405 (12%)

Query: 11  IDLTALKNNWHSM---NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           I+  A+K N  ++        +++   V+K N YGLG + ++     AG+    V  ++E
Sbjct: 458 INTKAIKENIKNIISFGKQCSHSKIIGVIKSNGYGLGSKLVSDLAIEAGIDFLAVAKLQE 517

Query: 68  GVKLRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVS- 121
            + LR        R+                  +  +I S      +   +K +      
Sbjct: 518 AIALRNSGIPSTVRLMTFEAPMIYDLSTYAANQIEVIIPSSKNAASINMIAKWLQNKHRV 577

Query: 122 ---HPYALQVDTGFNRLGLSLQEALDFTHNSFNK------KLGQLSLIISHLACADDPSS 172
                  + VDTG  R G       D    + +K         + + + +HLAC      
Sbjct: 578 LGKLKVHIMVDTGLRRDGGYESNIPDSVMETISKLQLLDPNQVEFAGLSTHLACYRCTDY 637

Query: 173 ------HVNSVQLERFRTLISHY--KGIEASLASSSGILLG----PNYHFQ--------- 211
                 +  ++Q  RF  +I     +G++  L    G L          F+         
Sbjct: 638 NGDEIINFRALQFHRFEKVIKFLFSQGVQIPLIHIGGGLALLAEKWPLQFEKFLKEFNVG 697

Query: 212 -LTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDS- 266
             TR G  LYG   + +    S  ++ VV  + ++  +     GE VSYGG  +  +D  
Sbjct: 698 FYTRVGHGLYGMELEKDLHLDSPRLRQVVKMDLQVRNVFYVEEGEPVSYGGYCRAPKDGA 757

Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
            IA  A G+A+G P T   L          G    I  +  PI+GKI M+  M ++    
Sbjct: 758 WIATLAGGWAEGVPRTAQTLG-----EWQHGMMVCINNHQYPIVGKINMNAMMVNLGSLT 812

Query: 327 SIEVGDYIQIFGP---DIKLDDVALASGTTNYDLLVRIGTRYAKF 368
            ++ GD   IFG    + KL+D+A  SG     ++V + T   + 
Sbjct: 813 KVKPGDRAIIFGWSDHEPKLNDLAQLSGQIAPSIMVNVPTSMPRV 857


>gi|289811326|ref|ZP_06541955.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 174

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 15/177 (8%)

Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKAL 249
            SL++S+  L  P  H+   RPGI LYG +            ++ V+T  + II ++   
Sbjct: 5   YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLSSEIIGVQTLS 64

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
           AGE V YGG   +T++  I + A GYADGYP                G    + G     
Sbjct: 65  AGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTPVLVDGIRTRT 113

Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y LL  +  R  
Sbjct: 114 VGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLLCAVAPRVP 170


>gi|34557112|ref|NP_906927.1| alanine racemase [Wolinella succinogenes DSM 1740]
 gi|34482827|emb|CAE09827.1| ALANINE RACEMASE [Wolinella succinogenes]
          Length = 342

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 142/377 (37%), Gaps = 51/377 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              L+I+  A  +N   +    G+    AVV KDNAYG G  ++A     AG+   FV +
Sbjct: 1   MAELRINSQAFFHNLKLLANHVGSKEKVAVVLKDNAYGHGLLEMALLCKEAGIASAFVKN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
             E   +R+      +  LYG    +       N+   + S+ Q      +         
Sbjct: 61  --EAEAIRIAPYFESVTALYGDVESKSPA----NVWVALHSLEQ------IRRIPKGRSV 108

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+VDTG NR G+  +E          + L  L  +++H    D+  S   S Q  RF  
Sbjct: 109 ELKVDTGMNRNGIMEEELFVALEAIRAQGLI-LCGVMAHNGYGDELGSEFFSQQ-RRFEG 166

Query: 185 LISH---------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPM 232
           + +                   SSSG L   N    L R GI++YG       +     +
Sbjct: 167 VRARVEEYAREHGLPRPRFHALSSSGALRSRNIQDDLVRFGIAIYGYLCAHPLVVSEIGL 226

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHS 291
           + V++  AR I  +    G  + YGG+ +L  ++  ++   +GY DG+        +EH 
Sbjct: 227 RPVLSLWARRITTKSLPKGARIGYGGKSELEEEAKKVSTYDVGYGDGFYRL-----NEHH 281

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
             +   G+         IL +++MD           +   + + +        ++A    
Sbjct: 282 KLLTAQGE--------RILPRVSMDCLSV-------VGEREEVCLM---EDASELARLFD 323

Query: 352 TTNYDLLVRIGTRYAKF 368
           T  Y++L R      + 
Sbjct: 324 TIPYEVLTRFSPFLKRV 340


>gi|208780376|ref|ZP_03247717.1| alanine racemase, C- domain family [Francisella novicida FTG]
 gi|208743744|gb|EDZ90047.1| alanine racemase, C- domain family [Francisella novicida FTG]
          Length = 351

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 150/362 (41%), Gaps = 23/362 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+   +K+N   +   + +++   +VK NAYG+G E I     N  V  + +  +EE 
Sbjct: 7   VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGVGIENIYKV-TNNLVDAYGIARIEEY 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             L+       I  L GI+          N+IP++ +   +  Y K      S    L  
Sbjct: 66  YVLKSLGCTKDIIFLSGIYAECFDFKIPKNVIPILGNELLIKDYIKYEDD-KSKQVMLDF 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D G  R G    + +   +   N     + ++ SH+    +         +++  +L + 
Sbjct: 125 DCGMGRFGFYKDDFIKHLYKLKNAGFSNI-ILFSHIPTGYNGFDKSKKY-IDKILSLATQ 182

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
            K ++ + ++S   L   ++  +  RP  ++ G   +  +   ++  +  +A II IR  
Sbjct: 183 TK-LKYTFSNSPVSLFSYDFQQEYIRPCSAILGYDQEPQE---IKFSLALKACIISIRDI 238

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
             G+ +SY  +    RD+ +A+  IGYADG               +       IK    P
Sbjct: 239 PKGQYISYANEYFCDRDTTVAILNIGYADGL-----------GCKIHKDSYLIIKDTKCP 287

Query: 309 ILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RY 365
           IL  I MD    DI+     +++ D I++FGP+ + L+  A     T  + L ++   R 
Sbjct: 288 IL-AINMDYLYIDISAIKHQLKILDMIELFGPNSLSLEQHASMYNITKDEALTKLNALRV 346

Query: 366 AK 367
            K
Sbjct: 347 KK 348


>gi|57242224|ref|ZP_00370163.1| alanine racemase, putative [Campylobacter upsaliensis RM3195]
 gi|57016904|gb|EAL53686.1| alanine racemase, putative [Campylobacter upsaliensis RM3195]
          Length = 327

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 132/366 (36%), Gaps = 50/366 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + +D  A K+N   +   +G   +   V KDNAYG G   +AP     GV    V    E
Sbjct: 4   ITLDSNAYKHNLSYIATRAGGYDKLICVFKDNAYGHGICLLAPVAKACGVNFVAVKDENE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              L  Y     I +L     G E + F       I ++ + + ++K      +    L+
Sbjct: 64  AYLLEKYFDN--ILILSHRPTGNENLNF-------IYALNEPSSFAKF---KKNTRIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DT  +R G+ +     F     +     L    +H   AD+  +   + Q   F+    
Sbjct: 112 IDTNMHRNGIDVNGLEKFLKELCHLN---LEGAFTHFMSADELDASYFT-QKYNFQKAKK 167

Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
             K      +     +SS +  G     ++ R G+  +G  DK      ++ V+   A  
Sbjct: 168 IIKNFTQNTLTFHSFNSSALFRGKMPQDEMCRVGLVQFGYGDK-----GLKKVLRLYAHK 222

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +  R    G+ V YGG         IA   +GYADG                  G     
Sbjct: 223 LSSRVLEKGQSVGYGGAYVANEPLQIATYDLGYADGLFR-----------YDGKGQLKLA 271

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    +LGK++MD    +       + G+ I +       +  A    T NY++LV++ 
Sbjct: 272 NGKE--MLGKMSMDSFSCE-------DSGEEICVLDD---ANLWADFFHTINYEILVKLN 319

Query: 363 TRYAKF 368
               + 
Sbjct: 320 ANIKRV 325


>gi|268679013|ref|YP_003303444.1| alanine racemase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617044|gb|ACZ11409.1| alanine racemase [Sulfurospirillum deleyianum DSM 6946]
          Length = 342

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 132/379 (34%), Gaps = 61/379 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + ++   L +N   ++  +G   R  AV+KDNAYG G  ++A      G++   V +VEE
Sbjct: 4   ITLNKANLFHNLALLSTKAGGKERVMAVLKDNAYGHGLREMAQLCCEFGIKKAAVKNVEE 63

Query: 68  GVKLRLYTPQARIFV----LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
              +     +  I V    L  + P         NL     S         L        
Sbjct: 64  AGVIADLFEEVLILVDQVPLEPLAP---------NLSFAAHS---CEMLEALRE---GSS 108

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             L +DTG +R G+   E +D       KK      + +H   AD+ S+     Q   F 
Sbjct: 109 IHLSIDTGMHRNGIKEHE-IDRAMALILKKRLVFKGVFTHFRSADELSTAFF-WQRSLFE 166

Query: 184 TLIS---------HYKGIEASLASSSGILLGPNYHFQ-LTRPGISLYGGT--DKINKSHP 231
                        H   +     +S+G+L   +       R GI++YG        K++ 
Sbjct: 167 RAKQRIKAFVLAHHLPEVAFHSCNSAGLLRTNSLGDDAYARVGIAMYGYNTLHPSFKAYE 226

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V+   A  +  R    GE V YGG  +   D LI+   IGY DG+           +
Sbjct: 227 LKPVLALWAEKLSTRILKRGERVGYGGVYEAPCDELISTYDIGYGDGFFRFDGIASLAMA 286

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD--YIQIFGPDIKLDDVALA 349
                              G+++MD              GD   + +F  +     +A  
Sbjct: 287 DGRLSK-------------GRMSMDSFCL---------EGDAPKVCMF-ENATA--LAER 321

Query: 350 SGTTNYDLLVRIGTRYAKF 368
             T  Y++  ++     + 
Sbjct: 322 FQTICYEIPTKLSPSLKRI 340


>gi|315638691|ref|ZP_07893865.1| alanine racemase [Campylobacter upsaliensis JV21]
 gi|315481315|gb|EFU71945.1| alanine racemase [Campylobacter upsaliensis JV21]
          Length = 327

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 131/366 (35%), Gaps = 50/366 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + +D  A K+N   +   +G   +   V KDNAYG G   +AP     GV    V    E
Sbjct: 4   ITLDSNAYKHNLSYIATRAGGYDKLICVFKDNAYGHGICLLAPVAKACGVNFVAVKDENE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              L  Y     I +L     G E + F       I ++ + + ++K      +    L+
Sbjct: 64  AYLLEKYFDN--ILILSHRPTGNENLNF-------IYALNEPSSFAKF---KKNTRIHLK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DT  +R G+ +     F     +     L    +H   AD+  +   + Q   F+    
Sbjct: 112 IDTNMHRNGIDVNGLEKFLKELCHLN---LEGAFTHFMSADELDASYFT-QKYNFQKAKK 167

Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
             K      +     +SS +  G     ++ R G+  +G  DK      ++ V+   A  
Sbjct: 168 IIKNFTQNTLTFHSFNSSALFRGKMPQDEMCRVGLVQFGYGDK-----GLKKVLRLYAHK 222

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +  R    G+ V YGG         IA   +GYADG                  G     
Sbjct: 223 LSSRVLEKGQSVGYGGAYVANEPLQIATYDLGYADGLFR-----------YDGKGQLKLA 271

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    +LGK++MD        S     G+   +   ++     A    T NY++LV++ 
Sbjct: 272 NGKE--MLGKMSMDSF------SCEDSGGEICVLDDANL----WADFFHTINYEILVKLN 319

Query: 363 TRYAKF 368
               + 
Sbjct: 320 ANIKRV 325


>gi|255322065|ref|ZP_05363213.1| alanine racemase [Campylobacter showae RM3277]
 gi|255300878|gb|EET80147.1| alanine racemase [Campylobacter showae RM3277]
          Length = 333

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 145/367 (39%), Gaps = 44/367 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L ++ +A  +N   + A +G   R   V+KDNAYG G   +     + G++   V +  E
Sbjct: 4   LVLNRSAYIHNLTKICAKAGGKDRVILVLKDNAYGHGAALVGREAASYGIKFCAVKNEVE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +L  +     I +L  I  G E   F       I SV  ++  +K           + 
Sbjct: 64  ARELEPFFEH--ILILSHIPNGGESERF-------IYSVNDISLIAKF---KKGARVHIA 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDT  +R G+S+ E      ++    L Q+    +H   A++ SS    VQ   F    +
Sbjct: 112 VDTLMHRNGVSVGEVRAACESALAHGL-QICGAFTHFRSAEELSSDYF-VQRRNFAAAKA 169

Query: 188 HYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
             + I          +S+          +  R GI+ YG   + + S  ++ V +  A  
Sbjct: 170 VVREICGDGLVFHSHNSAATERFGELADEYVRVGIAAYGYA-QFDDSLGLKRVASLWAHK 228

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
           +  R    G+   YG +   + D  IAV  +GY DG        + + +           
Sbjct: 229 VSGRVLKKGQCAGYGAKFCASEDMQIAVYDLGYGDGLLRYTGEGELKTA----------- 277

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G    +LGK++MD    +       + GD I +F  D ++   A   GT +YD+L ++ 
Sbjct: 278 GGQR--LLGKMSMDSFCCE-------DAGDRICVF-DDARV--WADFFGTISYDVLTKLS 325

Query: 363 TRYAKFY 369
              ++ +
Sbjct: 326 PSISRRF 332


>gi|253583923|ref|ZP_04861121.1| alanine racemase [Fusobacterium varium ATCC 27725]
 gi|251834495|gb|EES63058.1| alanine racemase [Fusobacterium varium ATCC 27725]
          Length = 351

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 146/377 (38%), Gaps = 36/377 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  N  +++ I+   L +N   +  L G      VVK NAYG G E I  ALY+ G ++ 
Sbjct: 1   MVINS-IKMIINQKNLLSNIDYLKKLKGK-NILPVVKANAYGHGVELIIKALYDGGQREV 58

Query: 61  FVTSVEEGVKLRL--YTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMS 117
            V    E   +         +I V   I  G  ++I +  NL   I+   +L     + +
Sbjct: 59  AVARYVEAENILKMNLGSDLKILVFESI--GDIELIKNNPNLEIAINDFNELKDL--IKA 114

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
              S+   L++D GF R G+SL E  +      N+   +   + SHL   +         
Sbjct: 115 GIPSNRMQLKIDLGFGRNGISLSEIPEL-EKFTNENNLKFKGVFSHLFAVNYEDG---LE 170

Query: 178 QLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
            ++ F  +++     K     L +S+ ++          R G+  YG  +       ++ 
Sbjct: 171 LIDLFSDVVNSIGKDKFEMIHLQNSAAVMNYNCDIATHIRVGMLTYGLQEVGYFDPNLKQ 230

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLT--RDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           V + E ++  +R     + V+Y  +  L       +A   IGY DG+             
Sbjct: 231 VFSLEGQVAGVRDIEDHKYVAYELKDDLDIENCKYLAKIKIGYGDGFLKR---------- 280

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
                 K  I      I  ++TMD T  ++    S++ GD + ++     +  V   +G 
Sbjct: 281 --NEKSKCIINNKEFKIA-QVTMDNTFIEV--DASVKEGDRVLLYND---ITKVVNFTGM 332

Query: 353 TNYDLLVRIGTRYAKFY 369
             Y+LL  +  R  + Y
Sbjct: 333 NIYELLTILSPRIPRVY 349


>gi|324999413|ref|ZP_08120525.1| alanine racemase [Pseudonocardia sp. P1]
          Length = 253

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 23/253 (9%)

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           DTG +R G    E      +          ++  + SHLA AD+P       Q  R R  
Sbjct: 2   DTGLSRNGCPPDEWPGLVDDVAAAAAEGTCEVDAVWSHLARADEPGDPSIDAQAARLRAA 61

Query: 186 ISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEA 240
            SH +         LA+S+ ++  P+ H  L RPGI+ YG          P++  +T   
Sbjct: 62  ASHVRDRGFAPLVHLANSAALMTRPDLHLDLVRPGIAAYGLDPIAQPADSPLRPAMTVRG 121

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           R+ L++   AGE VSYG +        +A+  +GYADG P  ++              + 
Sbjct: 122 RVALVKTVAAGEGVSYGHEWTAPGPRTLALVPLGYADGVPRRMNDGRRM---------RV 172

Query: 301 FIKGYMVPILGKITMDMTMFDI--TDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354
            I   + P+ G++ MD  + D      L + VGD +++FG          + A   GT +
Sbjct: 173 RIGDTVRPVAGRVCMDQFVVDCGAPGELGVVVGDRVELFGTGDGGGPTAREWADELGTIH 232

Query: 355 YDLLVRIGTRYAK 367
           Y+++  I  R  +
Sbjct: 233 YEIVTGIKGRVRR 245


>gi|307720266|ref|YP_003891406.1| Alanine racemase [Sulfurimonas autotrophica DSM 16294]
 gi|306978359|gb|ADN08394.1| Alanine racemase [Sulfurimonas autotrophica DSM 16294]
          Length = 339

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 145/371 (39%), Gaps = 51/371 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + ++     NN   +  L+    + A V+KDNAYG G  +IA      G+    V S EE
Sbjct: 4   ITLNKNHFFNNLTIIAKLTKAKDKIALVLKDNAYGHGLFEIATLAKEYGITKAVVRSNEE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             ++        I VL               +   I+ + Q+  ++K      +    L+
Sbjct: 64  AKEIENLFEY--ILVLADTPKE-----ASQKIRYTINDIRQIQKFAK------NTKVELK 110

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDTG  R G+ + E L+       ++  QL  + +H + AD+  +    +Q E F+ +  
Sbjct: 111 VDTGMCRNGIMMDE-LEEAFILCAQQGLQLEAVFTHHSSADE-DNRYFDLQNENFKRVKQ 168

Query: 188 H---------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTVV 236
                     +  +     +S+ +    ++   + R GI+ YG            +Q V+
Sbjct: 169 DSQVLAKKYSFIPLRFHSFNSAALFRSNDFDEDMARVGIAAYGCLELPSSLHVKNLQPVL 228

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +  A+ +  R+   GE V YG   +      ++    GY DG+  + S            
Sbjct: 229 SVYAQRLSSRRLQKGECVGYGAAFETAVTCNVSNYDFGYGDGFLRSCS------------ 276

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
               +I    + I G+I+MD + F +T+   + + D  ++          A  + T +Y+
Sbjct: 277 --HHYITPEGIKIAGRISMDNSSF-LTNKEKLLIFDDARVI---------AKFADTISYE 324

Query: 357 LLVRIGTRYAK 367
           +L  +  +  +
Sbjct: 325 ILTALKEKIKR 335


>gi|71425229|ref|XP_813053.1| alanine racemase [Trypanosoma cruzi strain CL Brener]
 gi|70877902|gb|EAN91202.1| alanine racemase, putative [Trypanosoma cruzi]
          Length = 388

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 93/393 (23%), Positives = 156/393 (39%), Gaps = 44/393 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67
           +++ L  +  N   +  ++G A    +VK NAYG G  +++  L+NA GV  F V S+ E
Sbjct: 7   VEVFLRNIAYNVECIRRIAGKAELIPMVKGNAYGHGMGRVSEYLHNACGVHKFGVASLGE 66

Query: 68  GVKLRLYTP------QARIFVLYGIHPGQEKIIFDT--------NLIPVISSVPQLTFYS 113
            ++L    P      Q  IFV        E               L P++ ++PQL  + 
Sbjct: 67  ALELIESQPSIAEKAQNEIFVFSDTEVLNEGCQSYYQPCGRWAVRLTPILGTLPQLKAFC 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS- 172
              +   S    L+++TG NRLGL   E  +       K+ G + L++ H   A      
Sbjct: 127 ASNAFNNS-KLCLKLETGMNRLGLRFDELEEAV--PILKQRGGVDLLLQHFGIAGSVERL 183

Query: 173 HVNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                  E F+         G+E    S+++S  +           RPGI LYG     +
Sbjct: 184 AETLNHYEAFKKAKKFLHDSGVEVRATSVSNSGAVEQRIGLEETYIRPGIMLYGPRSVTS 243

Query: 228 KSHPMQTVVT-AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           K+       +    +++       GE V Y        DS+I +  IGYADG+  T  G+
Sbjct: 244 KNLWNGKFASCFYTKVLHHFPLRKGEGVGYDLTPV-KADSVIVMLPIGYADGFLCTYKGM 302

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVG---------DYIQI 336
               +P      +  I      + G+I MDM    +  + +   +G           I++
Sbjct: 303 PINVTPE--DAAEPIIG----TVHGRINMDMAAVVVYPEEVGKNIGNIMAAVKKESRIRV 356

Query: 337 FGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +G DI  ++ A++ G   + L   +  R  + Y
Sbjct: 357 WGDDI--EEKAVSVGAIPHQLTCGLSIRVPRIY 387


>gi|71423858|ref|XP_812596.1| alanine racemase 2 [Trypanosoma cruzi strain CL Brener]
 gi|70877396|gb|EAN90745.1| alanine racemase 2, putative [Trypanosoma cruzi]
          Length = 388

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/393 (23%), Positives = 155/393 (39%), Gaps = 44/393 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67
           +++ L  +  N   +  ++G A    +VK NAYG G  K++  L+N  GV  F V S+ E
Sbjct: 7   VEVCLRNIAYNVECIRRIAGKAELIPMVKGNAYGHGMGKVSEYLHNVCGVHTFGVASLGE 66

Query: 68  GVKLRLYTP------QARIFVLYGIHPGQEKIIFDT--------NLIPVISSVPQLTFYS 113
            ++L    P      Q  IFV        E               L P++ ++PQL  + 
Sbjct: 67  ALELIESQPSIAEKAQNEIFVFSDTEVLNEGCQSYYQPCGRWAVRLTPILGTLPQLKAFC 126

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS- 172
              +   +    L+++TG NRLGL   E  +       K+ G + L++ H   A      
Sbjct: 127 ASNAFN-NTKLCLKLETGMNRLGLRFDELEEAV--PILKQRGGVDLLLQHFGIAGSVERL 183

Query: 173 HVNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                  E F+         G+E    S+++S  +           RPGI LYG     +
Sbjct: 184 AETLNHYEAFKNAKKFLHDSGVEVRATSVSNSGAVEQRIGLEETYIRPGIMLYGPRSVTS 243

Query: 228 KSHPMQTVVT-AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
           K+       +    +++       GE V Y        DS+I +  IGYADG+  T  G+
Sbjct: 244 KNLWNGKFASCFYTKVLHHFPLRKGEGVGYDLTPV-KADSVIVMLPIGYADGFLCTYKGM 302

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVG---------DYIQI 336
             + +P      +  I      + G+I MDM    +  + +   +G           I +
Sbjct: 303 PIKVTPE--DAAEPIIG----TVHGRINMDMAAVVVYPEEVGKNIGNIMAAVKKESRIHV 356

Query: 337 FGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           +G DI  ++ A++ G   + L   +  R  + Y
Sbjct: 357 WGDDI--EEKAVSVGAIPHQLTCGLSIRVPRIY 387


>gi|167626729|ref|YP_001677229.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167596730|gb|ABZ86728.1| Alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 351

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/363 (21%), Positives = 150/363 (41%), Gaps = 23/363 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           ++I+   +K+N   +   + +++   +VK NAYG+G E I     N  V  + +  +EE 
Sbjct: 7   VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGVGIENIYKV-TNNLVDAYGIARIEEY 65

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             L+       I  L GI+          N+IP++ +   +  Y K      S    L  
Sbjct: 66  YVLKNLGCTKDIVFLSGIYAECFNFKIPKNVIPILGNELLIKDYIKYEDD-KSKQVMLDF 124

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D G  R G    + +       +     + ++ SH+    +         + +  +L   
Sbjct: 125 DCGMGRFGFYRDDFIKHLDTLKSSGFSNI-ILFSHIPTGYNGYDKAKKY-INKILSLAEE 182

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248
            K ++ + ++S   L   ++  +  R   ++ G   +  +   ++  ++ +A II IR  
Sbjct: 183 TK-LKYTFSNSPVSLFDTDFQQEYIRSSSAILGYDQEPKE---IKFSLSLKACIISIRDI 238

Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
             GE +SYG +    +++ +A+  IGYADG      G +  H   +       IK    P
Sbjct: 239 PKGEYISYGNEYFCNKNTTVAILNIGYADGL-----GCEIHHDSYL------LIKATKCP 287

Query: 309 ILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RY 365
           IL  I MD    DI+     +++ D I++F P+ + L+  A     T  + L ++   R 
Sbjct: 288 ILS-INMDYLYVDISAIKQQLKMLDMIELFSPNSLSLEQHASMYNITKDEALTKLNALRV 346

Query: 366 AKF 368
            K 
Sbjct: 347 RKI 349


>gi|313683296|ref|YP_004061034.1| alanine racemase [Sulfuricurvum kujiense DSM 16994]
 gi|313156156|gb|ADR34834.1| alanine racemase [Sulfuricurvum kujiense DSM 16994]
          Length = 338

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 143/373 (38%), Gaps = 52/373 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTSVE- 66
           +K+   AL +N   +    G     AVV KDNAYG G   IA      GV+   V  +E 
Sbjct: 4   IKLSRKALIHNLDIIAHQVGGKDKIAVVLKDNAYGHGAVLIAQTASEYGVKQ-AVVRLER 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E  ++  Y     I        GQ+      +    I+S+ ++  Y             L
Sbjct: 63  EAEEIVRYFDNVLIL-------GQKPTQVHPHFSYAINSLEEIAQY------PSGARVEL 109

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT-- 184
           ++DTG +R G+  ++  +       + L  +  ++SH   AD  SS     Q + F    
Sbjct: 110 KIDTGMHRNGVFPEQLEEAFEKIAQRGLICV-GLMSHFRAADTLSSEWF-WQRKIFDATK 167

Query: 185 ------LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTVV 236
                    +   +   +++S+G          + R GI+LYG    DK  +   +Q+V+
Sbjct: 168 IRASALAKKYGWSLRFHISNSAGAFRSAECSDDMVRVGIALYGCLEMDKTLEQPELQSVL 227

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
           +     I  R   AGE V Y G  +   D +I+   +GYA+G     S            
Sbjct: 228 SLWGDKIATRVLKAGERVGYNGIYEAQSDEVISTYDLGYANGLDRLASNR---------- 277

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
               ++    + + G+I+MD   F   D+  + + D           +D A   GT  Y+
Sbjct: 278 ----YVTPEGIELRGRISMDSASF-AGDAEQLMIFD---------NANDYARIVGTIGYE 323

Query: 357 LLVRIGTRYAKFY 369
           +L  +     + +
Sbjct: 324 ILACLDKDLKREW 336


>gi|256027408|ref|ZP_05441242.1| alanine racemase, biosynthetic [Fusobacterium sp. D11]
 gi|289765372|ref|ZP_06524750.1| alanine racemase [Fusobacterium sp. D11]
 gi|289716927|gb|EFD80939.1| alanine racemase [Fusobacterium sp. D11]
          Length = 226

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 8/222 (3%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++ID   LK N   +  ++ N     VVK NAYGLG  +I   L   G+  F V ++
Sbjct: 2   RTWVEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSVEITKILQEIGINFFGVANL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           EE ++L+    + +I +L      +        +   ISS+ QL F   L++  ++    
Sbjct: 62  EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQLQF---LVNNKLNPNIH 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERF 182
           L+ DTG  RLG  + EA        N  L  L  I SHL+ +D     + +    Q+E+F
Sbjct: 119 LKFDTGMTRLGFEVDEAKKIIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKF 177

Query: 183 RTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGT 223
           + +++        +++S+GI     +    L R GI +Y  T
Sbjct: 178 KKIVNSLNLKYIHISNSAGITNFHNDIVGNLVRMGIGMYSFT 219


>gi|222824133|ref|YP_002575707.1| alanine racemase [Campylobacter lari RM2100]
 gi|222539355|gb|ACM64456.1| alanine racemase [Campylobacter lari RM2100]
          Length = 335

 Score =  199 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 131/370 (35%), Gaps = 50/370 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +KID  A + N   + + +G   +   V KDNAYG G + +AP     GV    V +  E
Sbjct: 4   IKIDRLAYEYNLDLIASKAGGYEKVICVFKDNAYGHGAKLLAPIARAKGVNFVAVKNEVE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +L        I +L     G E   F       I ++       KL     +    L 
Sbjct: 64  AKELEN--IFDNILILSHHPHGNESEKF-------IYALNDKNDIKKL---KKNTKIHLV 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +DT  +R G+ L+E  +      +  L  L  ++ H A +D+  +    VQ + F+    
Sbjct: 112 IDTNMHRNGILLEEIQEVLQGLKSNNLI-LHGVMMHFAGSDEVDASYF-VQKQNFQHAKK 169

Query: 188 --------HYKGIEASLASSSGILLGPNYHFQ-LTRPGISLYGGTDKINKSHPMQTVVTA 238
                     K +     +S  +            R G+  +G       S  ++ V++ 
Sbjct: 170 IIYNLLQKEAKSLVFHSHNSEALFRANTLEDDEYCRVGLVQFGYAYF---SKDLRKVLSL 226

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A  +  R    G+ V YGG      D  IA   +GYADG                    
Sbjct: 227 WAEKLSQRVLKKGQSVGYGGMYSAKEDIEIATYDLGYADGLLR-----------YDGKKD 275

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
                G    ILGK++MD          S E    +     D   + +A    T NY++L
Sbjct: 276 FFLPNGKK--ILGKMSMDSF--------SCENDSEVICVLND--ANVMASFFNTINYEIL 323

Query: 359 VRIGTRYAKF 368
           V++     + 
Sbjct: 324 VKLSPNLKRI 333


>gi|213621090|ref|ZP_03373873.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 200

 Score =  199 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
           SHLA AD P   +N  Q    +     +     SLA+S G+ L P +   L RPG++L+G
Sbjct: 1   SHLANADRPDHALNVYQHTLLQQAKKAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFG 60

Query: 222 GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
              +   S P++   T    I+ ++    G  + YG     TR   IA  + GYADG P 
Sbjct: 61  VA-QPWFSTPLKPAFTLTLTILRVQDVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPR 119

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341
            L                   +G  +P+LG++ MD  M D +  +    GD ++  G   
Sbjct: 120 NLRPPAG-----------VCWRGVRLPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQ 167

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKF 368
            L++VA A  T  Y+++ R+G R+ + 
Sbjct: 168 TLEEVAAACDTIPYEIMARLGARFRRI 194


>gi|302558949|ref|ZP_07311291.1| alanine racemase [Streptomyces griseoflavus Tu4000]
 gi|302476567|gb|EFL39660.1| alanine racemase [Streptomyces griseoflavus Tu4000]
          Length = 193

 Score =  199 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 23/195 (11%)

Query: 187 SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAE 239
           +  +G+      +A+S   L  P  HF L RPGI++YG +            ++  +T  
Sbjct: 5   AEAQGVRPEVRHIANSPATLTLPESHFDLVRPGIAMYGISPSPEIGTSADFGLRPAMTLS 64

Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299
           A + L++    G  VSYG        + + +  +GYADG P   S             G 
Sbjct: 65  ASLALVKHVPGGHGVSYGHHYVTPGATTLGLVPLGYADGIPRHAS-----------SAGP 113

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355
             ++G    + G++ MD  + D+      E G    +FGP    +   +D A A+GT  Y
Sbjct: 114 VLVEGKWRTVAGRVAMDQFVVDLGGDEP-EPGAEAVLFGPGDRGEPTAEDWAQAAGTIAY 172

Query: 356 DLLVRIGTRYAKFYT 370
           +++ RIG R  + + 
Sbjct: 173 EIVTRIGARVPRVHV 187


>gi|213615581|ref|ZP_03371407.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 187

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 5/185 (2%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +     F V  +EE 
Sbjct: 6   VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEA 63

Query: 69  VKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           ++LR       I +L G     +   I    L   + +  QL     +          ++
Sbjct: 64  LRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAV-ELAEPVTVWMK 122

Query: 128 VDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +DTG +RLG+  +EA  F       K + Q   I+SH A AD+P       QL+ F    
Sbjct: 123 LDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAFC 182

Query: 187 SHYKG 191
               G
Sbjct: 183 QGKPG 187


>gi|297521078|ref|ZP_06939464.1| alanine racemase [Escherichia coli OP50]
          Length = 163

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 15/172 (8%)

Query: 203 LLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
           LL P  HF   RPGI LYG +             Q V++  + +I +R+  AGE V YGG
Sbjct: 2   LLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGG 61

Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
                RD+ + V A+GY DGYP                G    + G  VPI+G++ MDM 
Sbjct: 62  TWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLVNGREVPIVGRVAMDMI 110

Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
             D+      + GD + ++G  + ++ +A  +  + Y+L+ R+ +R A  Y 
Sbjct: 111 CVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLTSRVAMKYV 162


>gi|223038883|ref|ZP_03609175.1| alanine racemase [Campylobacter rectus RM3267]
 gi|222879856|gb|EEF14945.1| alanine racemase [Campylobacter rectus RM3267]
          Length = 334

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 143/368 (38%), Gaps = 45/368 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L ++  A  NN   + A +G   R   V+KDNAYG G   +     N G++   V +  E
Sbjct: 4   LVLNRAAYINNLTKICAKAGGKDRVILVLKDNAYGHGATIVGREAANYGIKFCAVKNETE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +L  +     I VL  I  G E        I  ++S       S +          + 
Sbjct: 64  ARELEPFFEH--ILVLSHIPDGGESE----RFIYAVNS------LSLIAKFKKGARVHIA 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           VDT  +R G+++ EA      +    L Q+    +H   A++ SS    VQ   F T  +
Sbjct: 112 VDTLMHRNGVAVGEAKAACEAALVHGL-QICGAFTHFRSAEELSSDYF-VQRRNFDTAKA 169

Query: 188 HYKGIE------ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
             + I           +S+          +  R GI+ YG   + ++S  ++ V +  A 
Sbjct: 170 VVREICGERDLVFHSHNSAATERFGELADECVRVGIAAYGYA-QFDESLELKRVASLWAH 228

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
            +  R    G+   YG +   + D  +A+  +GY DG    +   +   +          
Sbjct: 229 KVSDRVLKKGQCAGYGAKFCASEDMRVAIYDLGYGDGLLRYVGEGELRTAS--------- 279

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
             G    +LGK++MD    +       + G+ I +F  D ++   A   GT +YD+L ++
Sbjct: 280 --GQR--LLGKMSMDSFCCE-------DAGEKICVF-DDARV--WAKFFGTISYDVLTKL 325

Query: 362 GTRYAKFY 369
                + +
Sbjct: 326 SPSINRRW 333


>gi|222151301|ref|YP_002560457.1| alanine racemase 2 [Macrococcus caseolyticus JCSC5402]
 gi|222120426|dbj|BAH17761.1| alanine racemase 2 [Macrococcus caseolyticus JCSC5402]
          Length = 360

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 140/368 (38%), Gaps = 35/368 (9%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            R  +D T    N     ++  N    AVVK+NAY  G E    A   AG+  F  T++ 
Sbjct: 3   ARWTVDRTKFIENV---KSVIDNTPVMAVVKNNAYHYGLEFAIDAFLQAGITTFSTTNLN 59

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E + +R   P+A IF++  +    +  +   N+   + S+    FY +  S        L
Sbjct: 60  EAILIRKIAPEATIFLMNPVTRFND--LRQYNIQMTLPSL---AFYHRYQSELDGISVHL 114

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQ----LSLIISHLACADDPSSHVNSVQLERF 182
           + +   +R G    E +    +  N+        ++ I +H   AD+       ++ E +
Sbjct: 115 EYENLLHRSGFKTFEEMKTVIDDNNQLPVHLQMNINGIWTHFGYADEFDVIEYEIEKESW 174

Query: 183 RTLISHYKGIE----ASLASSSGILLGPNYH-FQLTRPGISLYGGTD--KINKSHPMQTV 235
              +               +S+  +    +      R GI LYG      +++S   Q+ 
Sbjct: 175 LKGLKWISRYHTFEMIHSQNSASFIRDKIFDEHTHVRIGIILYGSRPYASLDESVTHQS- 233

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295
           +T  A +I +R    GE   Y       +++ +AV  IGY DG   T S           
Sbjct: 234 LTVSANVIQVRNISKGESAGYSFAFTAEKETKLAVVDIGYGDGILRTRS----------- 282

Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355
                 IKG   PI   + M     ++ +++  E  D + ++  +I++D+        N 
Sbjct: 283 -KHDCIIKGRRYPIR-ALMMSHMFVEVDNTVEAE--DEVILYSDEIRIDEFTFKGIGANS 338

Query: 356 DLLVRIGT 363
           + L  +  
Sbjct: 339 EQLSALNH 346


>gi|241667406|ref|ZP_04754984.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254875955|ref|ZP_05248665.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254841976|gb|EET20390.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 427

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 139/365 (38%), Gaps = 51/365 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNA-----GVQDFFV 62
           ++ID++A K+N   + ++ G+  +  AV+K +AYG G +     L +A      V     
Sbjct: 42  VEIDVSAYKHNLKVVKSIIGDDVKLCAVMKSDAYGHGLDN----LIDATVSSSAVDCIAA 97

Query: 63  TSVEE-GV---KLRLYTPQARIFVLYGIHPGQEKIIFD--TNLIPVISSVPQLTFYS--- 113
              +E  +   K++          +  +   +     +   ++  +I S  Q    S   
Sbjct: 98  VDNKEFAIISPKIQQSGRDITALRIAPVTKSELIQAINNGWDIEEIIGSYEQAKIISDTA 157

Query: 114 ----KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
               +++   V    ++ ++T   R+       ++    +      ++  +++H A   +
Sbjct: 158 QQMSEILGKKVIIKVSINIETAMGRMAFR---KVEDIKKAMKLPNIKVVGVMTHFAKDYE 214

Query: 170 PS---SHVNSVQLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYG-- 221
                      QL +F  ++S     +G    +A+S      P     + R G  +YG  
Sbjct: 215 SESVAEPATKQQLAKFDEIVSQLDLPEGTIQHVANSGAAAKYPWARRDMVRAGSLIYGED 274

Query: 222 GTDKINKSHPMQTVV-TAEARIILI-RKALAGELVSYG--GQKKLTRDSLIAVAAIGYAD 277
             D  +  H ++ V+ +  + + +I R       ++Y      +  R S  A    GY  
Sbjct: 275 LDDLQDPKHELRPVMKSFRSEVAIIERDIPPHSPINYDAEQYTRSDRKSTTATLRTGYNY 334

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---IEVGDYI 334
           G+P            +     +  I G   P++GK +M+M + DITD      ++VGD  
Sbjct: 335 GFP----------QRAYKSKMQVIIDGVKYPVIGKTSMNMLVVDITDEPKDKRVKVGDQA 384

Query: 335 QIFGP 339
            + G 
Sbjct: 385 LLVGK 389


>gi|257458910|ref|ZP_05624031.1| alanine racemase [Campylobacter gracilis RM3268]
 gi|257443707|gb|EEV18829.1| alanine racemase [Campylobacter gracilis RM3268]
          Length = 337

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 136/373 (36%), Gaps = 52/373 (13%)

Query: 10  KI--DLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVT-S 64
           +I  D  A  +N   + A  G A R   V KDN+YG GC          G V+   VT S
Sbjct: 3   EIILDRAAYAHNLAQIAAKVGGAERVFLVAKDNSYGHGCRLCCEEAAKLGFVR--AVTRS 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
             E  ++     +  I VL  I  G E   F             +   S           
Sbjct: 61  ATEAAQIADLFDE--ILVLSHIPGGDEDERFCY----------AVNDLSYFARLKRGLKI 108

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-Q----- 178
            +  DT  +R G++  E LD       +   +L    +H   +D+ S    +  Q     
Sbjct: 109 YIAADTAMHRNGIAASE-LDEALRLCKQGGFKLCGFFTHFRASDELSGDFFAQRQNFIEF 167

Query: 179 --LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
             L R +   + +  ++   ++S+ I     +  +  R G++ +G   + ++S  ++ V+
Sbjct: 168 KRLARQKAAAAGFGNLKFHSSNSAAIERSAGFEDEYVRVGMAQFGY-PQFDESLNLRPVL 226

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
              A +I  R    GE V YG + +   D  I    +GYADG                  
Sbjct: 227 KLYADLISSRVLKKGERVGYGAKFEAPHDMRIGTYDLGYADGLFR-----------YDGE 275

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
           G      G    +LGK++MD    +         G+ + +          A   GT  Y+
Sbjct: 276 GELALASGQK--MLGKMSMDSFCAEFG-------GEQVCVLDD---ARAWAKHFGTIEYE 323

Query: 357 LLVRIGTRYAKFY 369
           +LV++ +   + +
Sbjct: 324 ILVKLNSNIPRRF 336


>gi|257464238|ref|ZP_05628617.1| alanine racemase [Fusobacterium sp. D12]
 gi|317061757|ref|ZP_07926242.1| alanine racemase [Fusobacterium sp. D12]
 gi|313687433|gb|EFS24268.1| alanine racemase [Fusobacterium sp. D12]
          Length = 360

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 136/383 (35%), Gaps = 42/383 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  N F  L+++  A+ +N   +           V+K NAYG G  ++A     AG+   
Sbjct: 1   MIKNSFY-LEVNRDAILHNIEVLRKWKKK-DIIPVIKANAYGHGAVEMAKTCLQAGITQV 58

Query: 61  FVTSVEEGVKL------RLYTPQAR--IFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTF 111
            V   EE   +      +  +      I V      G + +I     +   I+S+  L  
Sbjct: 59  AVARYEEARHILEDSYFQRLSETVPFQILVFE--TMGDDSVIKAFPRIDMAINSLEDLK- 115

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
              L          +++D  F R G+  ++          K +  L  I SHL  +    
Sbjct: 116 -EALEHGISPKRMHVKIDLSFGRNGIEEKDFKYLIREIQEKNIF-LKGIFSHLFASSYED 173

Query: 172 SHVNSVQLERFRTLISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
                + +E F TL+S           L +S+             R G+  YG  +    
Sbjct: 174 G---LLCIELFSTLLSQIGREHFERIHLQNSASAYNYDCDIVTDIRVGMLNYGLQEPGYF 230

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKL--TRDSLIAVAAIGYADGYPLTLSGL 286
              +Q   + + R+  IR     + ++Y  +++L       IA   IGYADG+       
Sbjct: 231 HEDLQQAFSLKGRVDSIRAGKDMKYLAYERKEELGVEEAKWIAKIKIGYADGF------- 283

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346
                          I      I+ +ITMD +  ++ +   ++VGD + +F        V
Sbjct: 284 -----GKQNENTNCLIHRKEYRIV-EITMDNSFLEVDE--RVKVGDEVILF---YNAAKV 332

Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369
              +G   Y+ L  +  R  + +
Sbjct: 333 KQETGKQVYEHLTGLTERLPRKW 355


>gi|317121371|ref|YP_004101374.1| alanine racemase [Thermaerobacter marianensis DSM 12885]
 gi|315591351|gb|ADU50647.1| alanine racemase [Thermaerobacter marianensis DSM 12885]
          Length = 514

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 120/375 (32%), Gaps = 45/375 (12%)

Query: 9   LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +++DL  L  N  ++        R  AVVK + YGLG E  A  L  AG       ++E 
Sbjct: 16  IEVDLDVLAANLAAVRRFVRPGTRILAVVKGDGYGLGAEMAARTLVAAGADGLGTDTLEA 75

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP---- 123
            ++LR     A I V   + P          L   +     L   ++      +      
Sbjct: 76  ALRLRRAGITAPILVFQPVDPALAHHWVREGLTATVHDETTLRRLAQAAESARAGQAART 135

Query: 124 --------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---- 171
                     L+VD GF R G            + +    ++  + +H   A  P     
Sbjct: 136 GSPPGPCAVHLEVDMGFGRGGFHPDRVAAALAEAQSLPGIRVEGLYAHFPTAARPGLALR 195

Query: 172 -SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
                   ++R        +      A S  ++L  +    + R G  LYG   +  +  
Sbjct: 196 LLDRFLRLVQRLEQ--QGLRPPLVHCAESHLLVLASHAQLDMVRVGNLLYGYAPRAARRA 253

Query: 231 P--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL------- 281
              ++       R+  +R+  A  L            + +AV  +G ADG          
Sbjct: 254 GLAVRPPSRLVVRVGAVRR--AASLDPGYRGGWARPGAPVAVLPVGLADGLRPVREARFW 311

Query: 282 -------------TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
                         L       +  +  G +  + G  VP+ G+  M+  + D T  L +
Sbjct: 312 SDRLVILARRLLGALGASRVLGAAGLPPGPRLRVGGREVPLRGEFMMNHCLLDATG-LDL 370

Query: 329 EVGDYIQIFGPDIKL 343
           E G  +++    +  
Sbjct: 371 EPGQEVELVVGRLTA 385


>gi|224438031|ref|ZP_03658970.1| alanine racemase [Helicobacter cinaedi CCUG 18818]
 gi|313144476|ref|ZP_07806669.1| alanine racemase [Helicobacter cinaedi CCUG 18818]
 gi|313129507|gb|EFR47124.1| alanine racemase [Helicobacter cinaedi CCUG 18818]
          Length = 348

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 92/383 (24%), Positives = 145/383 (37%), Gaps = 63/383 (16%)

Query: 9   LKI--DLTALKNNWHSMNAL-----SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            +I  D  A K+N + +++        N   AAV+KDNAYG G +++A      G++  F
Sbjct: 2   AEIILDSKAYKHNLNLIHSHINSHNKSNVEIAAVLKDNAYGHGLKEMATIAAEYGIKSVF 61

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V +  E +++  + PQ      YG+  G     F  N+  VI           + +    
Sbjct: 62  VKNYNEAIQIYKFFPQVT--AFYGMPQGD----FAKNIAFVIHDE------KHISALPQG 109

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ--L 179
               L+V+ G NR G+   E   F      KKL +L  + SH    DD  S     Q   
Sbjct: 110 TKVELKVNVGMNRNGIEPSELESFIQAILQKKL-ELIGVFSHNGYGDDLDSVFFHTQSNF 168

Query: 180 ERFRTLISHY-------KGIEASLASSSGILLGPN--YHFQLTRPGISLYGGTD---KIN 227
            + +  + H             SL++S  I +         L R GI  YG  D   +  
Sbjct: 169 AKLKQEVLHLSQKYGFAPPRFHSLSTSGAIRVASEGGITDDLVRIGIGAYGYLDVSFENP 228

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            S  +Q V +  A  +  R    GE + Y G   L    +++   IGY DG+        
Sbjct: 229 ISDKLQKVASLYADRVSTRFLDKGERIGYSGCTTLNSPQVVSTYDIGYGDGFFR------ 282

Query: 288 SEHSPSVFLGGKGFI-KGYMVPILGKITMD--MTMFDITDSLSIEVGDYIQIFGPDIKLD 344
                 V    K +I  G  + IL + +MD      D            I +F     + 
Sbjct: 283 ------VNENHKVYIANG--LQILPRSSMDCFSCFCDEP---------RICVFND---VT 322

Query: 345 DVALASGTTNYDLLVRIGTRYAK 367
            +A A GT +Y++L  +     +
Sbjct: 323 HLAKAFGTISYEILTHLSPSIKR 345


>gi|314936455|ref|ZP_07843802.1| alanine racemase family protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655074|gb|EFS18819.1| alanine racemase family protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 357

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 135/359 (37%), Gaps = 37/359 (10%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
             +   +  N    AVVK+NAY  G E        AG+  F  TS++E V++R   P A 
Sbjct: 13  LRNATKVKNNQSIMAVVKNNAYHYGLEFAVRTFLEAGIHTFSTTSLKEAVRVRKLAPHAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS- 138
           IF++  ++      + + N+   + S+    +Y +  S        L+ +   +R G   
Sbjct: 73  IFLMNAVY--DFDTVRNNNIQMTLPSLE---YYYQYKSELKDINVHLEFENLLHRSGFKN 127

Query: 139 LQEALDFTHNSFNKKLG--QLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKG 191
           L E  +  H+  N       +  + +H   AD+       ++ E +  ++       Y+ 
Sbjct: 128 LDEIKEVLHHHENDNGSKMNIVGLWTHFGYADEFDVPEYGIEREAWLNVVNTLLNEGYQF 187

Query: 192 IEASLASSS-----GILLGPNYHFQLTRPGISLYGGTDKINKS-HPMQTVVTAEARIILI 245
                 +S+     G  L P       R GI+LYG         H ++  +T +  +I +
Sbjct: 188 ELIHAQNSASYYREGQQLLPY--HTHARVGIALYGSRPYSKLDEHEIEQALTVKGNVIQV 245

Query: 246 RKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           R+   G+   Y    +   D + +AV  IGY DG                    +  I G
Sbjct: 246 REVNKGDYCGYSFAFEAMHDHTHLAVVDIGYGDGILKK------------RATHEALING 293

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              PI   + M     ++ D   +   D + ++  DI++D+        N + L  +  
Sbjct: 294 KRYPIR-ALMMSHMFVEVDD--DVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|224476530|ref|YP_002634136.1| putative alanine racemase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421137|emb|CAL27951.1| putative alanine racemase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 358

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 146/370 (39%), Gaps = 43/370 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D     +N   + A   N    AVVK+NAY  G E    A   AG+  F  TS++E V+
Sbjct: 7   VDRKKFIDNAKQVKA---NQNLMAVVKNNAYNYGLEFSVKAFQEAGINTFSTTSLKEAVR 63

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +R   P+A IF++  ++    + + +  +   + S+    +Y +           L+ + 
Sbjct: 64  IRKIAPEATIFLMNAVY--DFETVRENEIHMTLPSL---AYYYEHKEDLEGVHVHLEFEN 118

Query: 131 GFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +R GL      +E L     + + K   +S I +H   AD+       ++ E +  ++
Sbjct: 119 LLHRSGLRSLDEFKEVLKDHEQNKSDKKMIISGIWTHFGYADEFDVPEYEIEKEAWLNIV 178

Query: 187 -----SHYKGIEASLASSSG------ILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QT 234
                  YK       +S+        LL  + H    R GI+LYG       S    Q 
Sbjct: 179 HSLLEEGYKFELIHAQNSAAFYRENQQLLPEHTHG---RVGIALYGSRPYSKLSEKQIQQ 235

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            +T +  +I +R    GE   Y    ++ ++ + +AV  +GY DG   T           
Sbjct: 236 SLTVKGNVIQVRDVQKGEYCGYSFAYEVEQNHTKLAVVDVGYGDGVLRT----------- 284

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353
                +  I G   PI   + M      + DS++ E  D + ++  D+++D+        
Sbjct: 285 -RAKHEATINGKRYPI-KALMMSHMFVAVDDSVTAE--DEVILYNEDMRIDEYTFKGVGA 340

Query: 354 NYDLLVRIGT 363
           N + L  +  
Sbjct: 341 NSEQLSALNH 350


>gi|260890257|ref|ZP_05901520.1| alanine racemase [Leptotrichia hofstadii F0254]
 gi|260859877|gb|EEX74377.1| alanine racemase [Leptotrichia hofstadii F0254]
          Length = 300

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 132/307 (42%), Gaps = 37/307 (12%)

Query: 81  FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVSHPYALQVDTGFNRLGL 137
             L  I P   K + + N+   I +  QL+ Y K++            ++V++G NRLG 
Sbjct: 1   MALNYIEPKNLKYVIENNVEFTIFNFSQLSDYLKILDKSFENRVLKIHIKVNSGMNRLGF 60

Query: 138 SLQEALDFTHNSFNKKL------GQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191
           +  E L+        ++       ++  I SH++ A+  +      Q+E++  ++  +  
Sbjct: 61  NENEILELIEKIKKHEINSKNNKLEIISIFSHISDAE--NQIETEKQVEKYENILKIFDK 118

Query: 192 IEA-----SLASSSGIL-LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
                    L +S  +   G  Y++   R G++LYG    ++    +  V+T +++II I
Sbjct: 119 NNVKYQYKHLQASPLLFKYGQKYNYDFARVGMALYGMEP-LSYDVGLLDVITVKSQIINI 177

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R     + +SYG +  + RDS I + +IGYA G+   +   +              I   
Sbjct: 178 RNVKKNDKISYGSKGIVNRDSKIGIVSIGYAHGFQKQIENSEE---------AYVLINEK 228

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----------IKLDDVALASGTTNY 355
              I+G+I MDM   D+TD  ++EV D + I G            I L  VA  +GT   
Sbjct: 229 KAKIVGEICMDMIFIDLTDIENVEVNDEVVIIGSQKNVENEITEKITLRQVAKWAGTIQD 288

Query: 356 DLLVRIG 362
           D+L +  
Sbjct: 289 DVLTKFS 295


>gi|228476139|ref|ZP_04060847.1| alanine racemase 2 [Staphylococcus hominis SK119]
 gi|228269962|gb|EEK11442.1| alanine racemase 2 [Staphylococcus hominis SK119]
          Length = 357

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 135/359 (37%), Gaps = 37/359 (10%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
             +   +  N    AVVK+NAY  G E        AG+  F  TS++E V++R   P A 
Sbjct: 13  LRNATKVKNNQSIMAVVKNNAYHYGLEFAVRTFLEAGIHTFSTTSLKEAVRIRKLAPHAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS- 138
           IF++  ++      + + N+   + S+    +Y +  S        L+ +   +R G   
Sbjct: 73  IFLMNAVY--DFDTVRNNNIQMTLPSLE---YYYQYKSELKDINVHLEFENLLHRSGFKN 127

Query: 139 LQEALDFTHNSFNKKLG--QLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKG 191
           L E  +  H+  N       +  + +H   AD+       ++ E +  ++       Y+ 
Sbjct: 128 LDEIKEVLHHHENDNGSKMNIVGLWTHFGYADEFDVPEYGIEREAWLNVVNTLLNEGYQF 187

Query: 192 IEASLASSS-----GILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEARIILI 245
                 +S+     G  L P       R GI+LYG         H ++  +T +  +I +
Sbjct: 188 ELIHAQNSASYYREGQQLLPY--HTHARVGIALYGSRPYSKLGEHEIEQALTVKGNVIQV 245

Query: 246 RKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304
           R+   G+   Y    +   D + +AV  IGY DG                    +  I G
Sbjct: 246 REVNKGDYCGYSFAFEAMHDHTHLAVVDIGYGDGILKK------------RATHEALING 293

Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              PI   + M     ++ D   +   D + ++  DI++D+        N + L  +  
Sbjct: 294 KRYPIR-ALMMSHMFVEVDD--DVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|213028189|ref|ZP_03342636.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 185

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 83/188 (44%), Gaps = 6/188 (3%)

Query: 39  NAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDT 97
           NAYG G  + A  L +     F V  +EE ++LR       I +L G     +   I   
Sbjct: 1   NAYGHGLLETARTLPD--ADAFGVARLEEALRLRAGGITQPILLLEGFFDAADLPTISAQ 58

Query: 98  NLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQ 156
            L   + +  QL     +          +++DTG +RLG+  +EA  F       K + Q
Sbjct: 59  CLHTAVHNQEQLAALEAV-ELAEPVTVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQ 117

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPG 216
              I+SH A AD+P       QL+ F        G + S+A+S GILL P  HF   RPG
Sbjct: 118 PVNIVSHFARADEPECGATEHQLDIFNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPG 176

Query: 217 ISLYGGTD 224
           I LYG + 
Sbjct: 177 IILYGVSP 184


>gi|330684704|gb|EGG96402.1| putative alanine racemase [Staphylococcus epidermidis VCU121]
          Length = 358

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 141/369 (38%), Gaps = 41/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D  A  +N   +          AVVK+NAY  G E        AG+  F  TS++E V+
Sbjct: 7   VDTEAFYSNAKKVKNQQP---IMAVVKNNAYHYGLEFAVKQFLRAGINTFSTTSLKEAVR 63

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +R   P A +F++  ++      + D ++   + S+    +Y +  +        L+ + 
Sbjct: 64  VRELAPDATVFLMNAVY--DFDTVRDYHIHMTLPSL---NYYYEHKADLRDIHVHLEFEN 118

Query: 131 GFNRLGL-SLQEALDFTHNSFNKKLGQ---LSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +R G  +L+E      +    K  +   +S + +H   AD+        +   +  ++
Sbjct: 119 LLHRSGFKTLEEIQQVLQDHQQNKNSERMIISGLWTHFGYADEFGVPEYDEERSAWLNVL 178

Query: 187 -----SHYKGIEASLASSS-----GILLGPNYHFQLTRPGISLYGGTDKINKSH-PMQTV 235
                  Y+       +S+     G ++ P  H    R GI+LYG     +     +Q  
Sbjct: 179 HTLLNEGYQFDYIHSQNSASYYREGQVVLP--HHTHARVGIALYGSRPYSDLDESTIQQA 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +T +A +I IR+   G+   Y    +   D + +AV  +GY DG   T            
Sbjct: 237 LTVKANVIQIREVQNGDYCGYSWAFETQHDNTKLAVVDVGYGDGILRT------------ 284

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
               +  I G   PI   + M     ++ +   +   D + ++   +++D+        N
Sbjct: 285 RAQHEALINGKRYPIR-ALMMSHMFVEVDEH--VHAQDQVVLYNESMRIDEYTFKGVGAN 341

Query: 355 YDLLVRIGT 363
            + L  +  
Sbjct: 342 SEQLSAMNH 350


>gi|309802669|ref|ZP_07696773.1| putative alanine racemase [Bifidobacterium dentium JCVIHMP022]
 gi|308220733|gb|EFO77041.1| putative alanine racemase [Bifidobacterium dentium JCVIHMP022]
          Length = 353

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 108/283 (38%), Gaps = 25/283 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
             +  +DL AL++N   + ++ G          VVK +AYG G    A A    G     
Sbjct: 28  PAQAIVDLAALRDNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGATWLG 87

Query: 62  VTSVEEGVKLRLYTPQA-RIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLT-FYSKLM 116
                E + LR       R  +L  ++ G       +   ++   + S+  +        
Sbjct: 88  TAQSHEALLLRKAGIGLDRCHILTWVYNGTAVPFDELVANDIDVSVGSLGGIDGVAEAAR 147

Query: 117 SCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             G +    ++VD+GF R G +      AL        + +  +    SHLA AD P   
Sbjct: 148 RLGKTARVHVKVDSGFGRNGFTPAGFDAALAKLVPLVKEGVLHVVGQWSHLAVADAPDVP 207

Query: 174 V----NSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD 224
                   Q+E F+      +  GI      LA+++  L  P  HF+LTRPGI LYG   
Sbjct: 208 EFVASTDRQIENFKDFTRRMEAAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLYGYEA 267

Query: 225 KINKSHPM----QTVVTAEARIILIRKALAGELVSYGGQKKLT 263
                 P     +  +T +A++  ++   AG  +SYG      
Sbjct: 268 DPAMGTPGTYGLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTP 310


>gi|319955971|ref|YP_004167234.1| alanine racemase [Nitratifractor salsuginis DSM 16511]
 gi|319418375|gb|ADV45485.1| alanine racemase [Nitratifractor salsuginis DSM 16511]
          Length = 335

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/366 (21%), Positives = 141/366 (38%), Gaps = 47/366 (12%)

Query: 11  IDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ID     +N + +   +G+  R A V+KDNAYG G   +     + G+++  V + +E  
Sbjct: 6   IDRGNFYHNLNQLALKAGSKDRLAVVLKDNAYGHGLRLMGELSRDYGIREAVVVTNDEAD 65

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129
           ++        I VL             +     +S +  L +              L+VD
Sbjct: 66  QISDLFDH--ILVLGDSPRPS------SRCSYAVSEIGLLRWIE------PGVLIELKVD 111

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT----- 184
           TG +R G+   E L+       K+  +L  +I+H   AD+ +S     Q +RF       
Sbjct: 112 TGMHRNGIEP-ERLEEALEIIRKRKLRLFGVITHYRSADELTSEYF-WQKKRFDEVKKRV 169

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARI 242
           + + +        +S+ +L   N+   + R GI++YG     K  +   ++ V++  AR 
Sbjct: 170 IDAGFSETRFHSHNSAALLRCRNFDEDIARVGIAIYGYNTLPKGFEGVELKPVLSLWARR 229

Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
              R+   G  + YGG+    R+  ++   +GY DG+P           P     GK   
Sbjct: 230 ASTRRLQEGARIGYGGEFTADREMPVSTYDLGYGDGWPRG-----RASEPYRTAEGKA-- 282

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
                 ILG+++MD    +          D I +     +    A   GT  Y++   + 
Sbjct: 283 ------ILGRVSMDFISVE-------GEADRICVMEDARRA---ARHFGTICYEMTTALM 326

Query: 363 TRYAKF 368
               + 
Sbjct: 327 PTIPRR 332


>gi|261883963|ref|ZP_06008002.1| alanine racemase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 235

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 104/238 (43%), Gaps = 24/238 (10%)

Query: 104 SSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
             V      + L    G   P  LQ DTG +RLGLS +E      N        +   IS
Sbjct: 3   HQVLACLQVAALATRLGKKLPALLQFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAIS 62

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
           HLA  D+P + VN+ QL +   L++    + A+LA+S G  LG  Y+F L RPGI+LYG 
Sbjct: 63  HLANGDEPGNAVNARQLAKMTALLARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGI 122

Query: 223 TDKINKSHPMQ-------------TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
             +       +              V+T  AR+I +R    G  V YGG         IA
Sbjct: 123 DPERQHDFSDKVAHENKKPKHSILPVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIA 182

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327
             A+GYADG   +LS            G + F     +PI+G++++D    D+T    
Sbjct: 183 TIAVGYADGLVRSLSN----------KGRRPFSANTRLPIIGRVSIDSITLDVTSLPE 230


>gi|255030944|ref|ZP_05302895.1| hypothetical protein LmonL_20763 [Listeria monocytogenes LO28]
          Length = 199

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 19/209 (9%)

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           +    L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL
Sbjct: 3   TLRIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQL 62

Query: 180 ERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233
            +F+T+++  K        A+S+  LL P   F   R GIS+YG T            ++
Sbjct: 63  AKFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELK 122

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
             +     ++ +++   G+ VSYG     T    +A   IGYADG     SG        
Sbjct: 123 PALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF------- 175

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDI 322
                   + G + PI+G++ MD T+  +
Sbjct: 176 -----HVLVGGELAPIIGRVCMDQTIIKL 199


>gi|239637087|ref|ZP_04678081.1| alanine racemase 2 [Staphylococcus warneri L37603]
 gi|239597437|gb|EEQ79940.1| alanine racemase 2 [Staphylococcus warneri L37603]
          Length = 358

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 141/369 (38%), Gaps = 41/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D  A  NN   +          AVVK+NAY  G E        AG+  F  TS++E V+
Sbjct: 7   VDTEAFYNNAKKVKNQQP---IMAVVKNNAYHYGLEFAVRQFLRAGINTFSTTSLKEAVR 63

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +R   P A +F++  ++      + D ++   + S+    +Y +           L+ + 
Sbjct: 64  VRELAPDATVFLMNAVY--DFDTVRDYHIHMTLPSL---KYYYEHKEDLRDIHVHLEFEN 118

Query: 131 GFNRLGL-SLQEALDFTHNSFNKKLGQ---LSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +R G  +L+E  +   +  + K  +   +S + +H   AD+       V+   +  ++
Sbjct: 119 LLHRSGFKTLEEIQEVLQDHQHNKNPKRMIISGLWTHFGYADEFGVTEYDVERSAWLNVL 178

Query: 187 -----SHYKGIEASLASSS-----GILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTV 235
                  Y+       +S+     G ++ P  H    R GI+LYG           +Q  
Sbjct: 179 HTLLNEGYQFDYIHSQNSASYYREGQVVLP--HHTHARVGIALYGSRPYSGLNESAIQQA 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +T +A +I IR+   G+   Y    +   D + +AV  +GY DG                
Sbjct: 237 LTVKANVIQIREVQNGDYCGYSWAFETQHDNTKLAVVDVGYGDGILRA------------ 284

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
               +  I G   PI   + M     ++ +   +   D + ++   +++D+        N
Sbjct: 285 RAQHEALINGKRYPIR-ALMMSHMFVEVDEH--VHAQDQVVLYNESMRIDEYTFKGVGAN 341

Query: 355 YDLLVRIGT 363
            + L  +  
Sbjct: 342 SEQLSAMNH 350


>gi|57651899|ref|YP_186286.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161172|ref|YP_493989.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195126|ref|YP_499927.1| alanine racemase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221522|ref|YP_001332344.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509565|ref|YP_001575224.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140626|ref|ZP_03565119.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452194|ref|ZP_05700209.1| alanine racemase 2 [Staphylococcus aureus A5948]
 gi|262050354|ref|ZP_06023197.1| hypothetical protein SAD30_2197 [Staphylococcus aureus D30]
 gi|262053091|ref|ZP_06025262.1| hypothetical protein SA930_1088 [Staphylococcus aureus 930918-3]
 gi|282927786|ref|ZP_06335399.1| alanine racemase [Staphylococcus aureus A9765]
 gi|284024399|ref|ZP_06378797.1| alanine racemase [Staphylococcus aureus subsp. aureus 132]
 gi|294850734|ref|ZP_06791453.1| alanine racemase [Staphylococcus aureus A9754]
 gi|304381024|ref|ZP_07363679.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|20137472|sp|Q9EZ08|ALR2_STAA8 RecName: Full=Alanine racemase 2
 gi|81694524|sp|Q5HG21|ALR2_STAAC RecName: Full=Alanine racemase 2
 gi|57286085|gb|AAW38179.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127146|gb|ABD21660.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202684|gb|ABD30494.1| alanine racemase, putative [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374322|dbj|BAF67582.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368374|gb|ABX29345.1| alanine racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860131|gb|EEV82964.1| alanine racemase 2 [Staphylococcus aureus A5948]
 gi|259159014|gb|EEW44087.1| hypothetical protein SA930_1088 [Staphylococcus aureus 930918-3]
 gi|259161553|gb|EEW46152.1| hypothetical protein SAD30_2197 [Staphylococcus aureus D30]
 gi|269940894|emb|CBI49277.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282592040|gb|EFB97068.1| alanine racemase [Staphylococcus aureus A9765]
 gi|294822410|gb|EFG38860.1| alanine racemase [Staphylococcus aureus A9754]
 gi|302751228|gb|ADL65405.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340440|gb|EFM06379.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315195911|gb|EFU26276.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140793|gb|EFW32642.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142185|gb|EFW34003.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314075|gb|AEB88488.1| Alanine racemase 2 [Staphylococcus aureus subsp. aureus T0131]
 gi|329725317|gb|EGG61801.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 361

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 148/355 (41%), Gaps = 41/355 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASL 196
            L   H++ N K+  +S + +H   AD+      +V+  ++  ++     +G +      
Sbjct: 134 VLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKAL 249
            +S+     G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHDIVQS-LTLKAHVIQVREVQ 249

Query: 250 AGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
           AG+   Y         ++ +AV  IGY DG   T                +  I G   P
Sbjct: 250 AGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYP 297

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           I   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 298 IR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|323444052|gb|EGB01663.1| alanine racemase [Staphylococcus aureus O46]
          Length = 363

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 144/356 (40%), Gaps = 41/356 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVLEHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASL 196
            L   H + N K+  +S + +H   AD+      +++  ++  ++     +G +      
Sbjct: 134 VLKDHHQNQNAKMI-ISGLWTHFGYADEFDVSDYNIERSQWMEIVEALLTEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV---VTAEARIILIRKA 248
            +S+     G +L P  H    R GI+LYG     + +     +   +T +A +I +R+ 
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHQHDIVQSLTVKAHVIQVREV 250

Query: 249 LAGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
            AG+   Y         ++ +AV  IGY DG   T                +  I G   
Sbjct: 251 QAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRY 298

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           PI   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 299 PIR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 351


>gi|82750990|ref|YP_416731.1| alanine racemase [Staphylococcus aureus RF122]
 gi|82656521|emb|CAI80943.1| probable alanine racemase [Staphylococcus aureus RF122]
          Length = 361

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 151/355 (42%), Gaps = 41/355 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASL 196
            L   H + N K+  +S + +H   AD+      +V+  ++  ++     +G +      
Sbjct: 134 VLKDHHQNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKAL 249
            +S+     G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHDIVQS-LTVKAHVIQVREVQ 249

Query: 250 AGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
           AG+   Y    ++T+D + +AV  IGY DG   T                +  I G   P
Sbjct: 250 AGDYCGYSFAFEVTKDNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYP 297

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           I   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 298 IR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|323464498|gb|ADX76651.1| alanine racemase 2 [Staphylococcus pseudintermedius ED99]
          Length = 359

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 139/358 (38%), Gaps = 35/358 (9%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
             ++  ++ N    AVVK+NAY  G +        AG+  F  TS+ E V++R   P+A 
Sbjct: 13  LQNVKQVTQNQSVMAVVKNNAYNYGLDFAVQMFQQAGIDTFSTTSLVEAVRIRELAPEAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL 139
           IF++      +     D ++      +P LTFY +  +        L+ +   +R G   
Sbjct: 73  IFLMNATDEFERLRANDIHMT-----LPSLTFYRENKAALAGVKVHLEYENLLHRSGFKT 127

Query: 140 -QEALDFTHNSFNKKLG--QLSLIISHLACADDPSSHVNSVQLERFRTLISHY---KGIE 193
             E L    +         +++ + +H   AD+    ++  + E + T++      +G  
Sbjct: 128 KDELLAVLADHEQNPAPKMEITGLWTHFGYADEFDVDMHEKEREAWLTIVETLVKQRGYH 187

Query: 194 ---ASLASSSGILL---GPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAEARIILIR 246
                  +S+           H    R GI+LYG     + S       +T +A +I +R
Sbjct: 188 FDLIHAQNSASYYREGQRVFDHHTHARIGIALYGSRPYASLSPGCITQALTVKANVIQVR 247

Query: 247 KALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
               G+   Y     + +  + +AV  +GY DG   T +  D              I G 
Sbjct: 248 NVQQGDHCGYSFAYTVEQPHTRLAVVDVGYGDGILRTRAQHD------------VSINGK 295

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIG 362
             PI   + M     ++ D++S +  D + ++   D+++DD        N + L  + 
Sbjct: 296 RYPIR-ALMMSHMFVEVDDTVSAK--DSVILYNNSDLRIDDYTFKGVGANSEQLSALN 350


>gi|57866855|ref|YP_188547.1| alanine racemase [Staphylococcus epidermidis RP62A]
 gi|242242676|ref|ZP_04797121.1| alanine racemase [Staphylococcus epidermidis W23144]
 gi|57637513|gb|AAW54301.1| alanine racemase family protein [Staphylococcus epidermidis RP62A]
 gi|242233812|gb|EES36124.1| alanine racemase [Staphylococcus epidermidis W23144]
          Length = 357

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 137/358 (38%), Gaps = 35/358 (9%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
           + +   +  N    AVVK+NAY  G E        A +  F  TS+ E +++R   P+A 
Sbjct: 13  YQNAVKVKNNEPIMAVVKNNAYHYGLEFAVKTFLKADINTFSTTSLNEAIRVRKIAPEAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS- 138
           IF++  ++     ++   ++   + S+    +Y K           L+ +   +R G   
Sbjct: 73  IFLMNPVY--DFDLVKRYDIHMTLPSL---NYYYKYKQDLKGIHVHLEYENLLHRSGFRN 127

Query: 139 LQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           ++E  +    H+  N+    +S I +H   AD+       ++ + +  LI+         
Sbjct: 128 IEEIREVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINTLLNENYHF 187

Query: 197 -----ASSSGILLGPNY---HFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARIILIR 246
                 +S+           H    R GI+LYG      IN+    Q+ +T +  +I +R
Sbjct: 188 DMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQS-LTVKGNVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
               G+   Y    ++  D + +AV  IGY DG   +                +  I G 
Sbjct: 247 DVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKS------------RAKHEAIINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             PI   + M     ++ D   +   D + ++  DI++D+        N + L  +  
Sbjct: 295 RYPIR-ALMMSHMFIEVDD--EVHAQDEVILYNKDIRIDEFTFKGVGANSEQLSAMNH 349


>gi|70726513|ref|YP_253427.1| alanine racemase 2 [Staphylococcus haemolyticus JCSC1435]
 gi|68447237|dbj|BAE04821.1| alanine racemase 2 [Staphylococcus haemolyticus JCSC1435]
          Length = 358

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 154/369 (41%), Gaps = 41/369 (11%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D  A   N  ++   +GN+   AVVK+NAY  G E    +   AG+  F  TS++E +K
Sbjct: 7   VDKEAFLQN--AIKVKNGNS-IMAVVKNNAYHYGLEFAVTSFLKAGINTFSTTSLKEAIK 63

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +R   P A IF++  ++    + +    +   + S+    +Y K  +        L+ + 
Sbjct: 64  VREIAPDATIFLMNAVY--DFEKVRHYQIQMTLPSL---AYYYKYKNDLSGIKVHLEFEN 118

Query: 131 GFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +R G      ++E L+  H + N+    +S + +H   AD+      S++ E +  ++
Sbjct: 119 LLHRSGFRTLEEIREVLNDHHINSNEDKMIISGLWTHFGYADEFDVPEYSIEREAWLNIV 178

Query: 187 SHY--KGIE---ASLASSS-----GILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTV 235
                +G         +S+     G  L P  H    R GI+LYG         + ++  
Sbjct: 179 DTLLDEGYHFDLIHAQNSASYYREGQKLLP--HHTHARVGIALYGSRPYSALNEYSIKQS 236

Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           +T +  +I +R+  AG+   Y    + TRD + +AV  +GY DG   +            
Sbjct: 237 LTVKGNVIQVREVNAGDNCGYSFAFEATRDHTRLAVVDVGYGDGILKS------------ 284

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354
               +  IKG   PI   + M     ++ + +  +  D + ++  DI++D+        N
Sbjct: 285 RAKHEALIKGKRYPIR-ALMMSHMFVEVDEEVDAQ--DEVILYNNDIRIDEYTFKGVGAN 341

Query: 355 YDLLVRIGT 363
            + L  +  
Sbjct: 342 SEQLSAMNH 350


>gi|329733446|gb|EGG69778.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 361

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 146/355 (41%), Gaps = 41/355 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196
            L   H + N K+  +S + +H   AD+      +V+  ++  ++       Y+      
Sbjct: 134 VLKDHHQNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVESLLSEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKAL 249
            +S+     G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHDIVQS-LTVKAHVIQVREVQ 249

Query: 250 AGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
           AG+   Y         ++ +AV  IGY DG   T                +  I G   P
Sbjct: 250 AGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYP 297

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           I   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 298 IR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|323441183|gb|EGA98890.1| alanine racemase [Staphylococcus aureus O11]
          Length = 363

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 144/356 (40%), Gaps = 41/356 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASL 196
            L   H + N K+  +S + +H   AD+      +++  ++  ++     +G +      
Sbjct: 134 VLKDHHQNQNAKMI-ISGLWTHFGYADEFDVSDYNIERSQWMEIVEALLTEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV---VTAEARIILIRKA 248
            +S+     G +L P  H    R GI+LYG     + +     +   +T +A +I +R+ 
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHQHDIVQSLTVKAHVIQVREV 250

Query: 249 LAGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
            AG+   Y         ++ +AV  IGY DG   T                +  I G   
Sbjct: 251 QAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRY 298

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           PI   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 299 PIR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 351


>gi|27467997|ref|NP_764634.1| putative alanine racemase [Staphylococcus epidermidis ATCC 12228]
 gi|293366638|ref|ZP_06613315.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315542|gb|AAO04676.1|AE016747_173 putative alanine racemase [Staphylococcus epidermidis ATCC 12228]
 gi|291319407|gb|EFE59776.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736963|gb|EGG73220.1| putative alanine racemase [Staphylococcus epidermidis VCU045]
          Length = 357

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 137/358 (38%), Gaps = 35/358 (9%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
           + +   +  N    AVVK+NAY  G E        A +  F  TS+ E +++R   P+A 
Sbjct: 13  YQNAVKVKNNEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIRVRKIAPEAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS- 138
           IF++  ++     ++   ++   + S+    +Y K           L+ +   +R G   
Sbjct: 73  IFLMNPVY--DFDLVKRYDIHMTLPSL---NYYYKYKQDLKGIHVHLEYENLLHRSGFRN 127

Query: 139 LQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           ++E  +    H+  N+    +S I +H   AD+       ++ + +  LI+         
Sbjct: 128 IEEIREVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINTLLNENYHF 187

Query: 197 -----ASSSGILLGPNY---HFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARIILIR 246
                 +S+           H    R GI+LYG      IN+    Q+ +T +  +I +R
Sbjct: 188 DMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQS-LTVKGNVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
               G+   Y    ++  D + +AV  IGY DG   +                +  I G 
Sbjct: 247 DVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKS------------RAKHEAIINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             PI   + M     ++ D   +   D + ++  DI++D+        N + L  +  
Sbjct: 295 RYPIR-ALMMSHMFIEVDD--EVHAQDEVILYNKDIRIDEFTFKGVGANSEQLSAMNH 349


>gi|15924389|ref|NP_371923.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926979|ref|NP_374512.1| hypothetical protein SA1231 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267887|ref|YP_001246830.1| alanine racemase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393950|ref|YP_001316625.1| alanine racemase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979718|ref|YP_001441977.1| hypothetical protein SAHV_1387 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315276|ref|ZP_04838489.1| hypothetical protein SauraC_03777 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253733354|ref|ZP_04867519.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006188|ref|ZP_05144789.2| hypothetical protein SauraM_06955 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795546|ref|ZP_05644525.1| alanine racemase [Staphylococcus aureus A9781]
 gi|258413354|ref|ZP_05681630.1| alanine racemase [Staphylococcus aureus A9763]
 gi|258420539|ref|ZP_05683481.1| alanine racemase [Staphylococcus aureus A9719]
 gi|258434689|ref|ZP_05688763.1| alanine racemase 2 [Staphylococcus aureus A9299]
 gi|258444735|ref|ZP_05693064.1| alanine racemase 2 [Staphylococcus aureus A8115]
 gi|258447430|ref|ZP_05695574.1| alanine racemase [Staphylococcus aureus A6300]
 gi|258449271|ref|ZP_05697374.1| alanine racemase 2 [Staphylococcus aureus A6224]
 gi|258454651|ref|ZP_05702615.1| alanine racemase 2 [Staphylococcus aureus A5937]
 gi|269203021|ref|YP_003282290.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892892|ref|ZP_06301127.1| alanine racemase 2 [Staphylococcus aureus A8117]
 gi|282929363|ref|ZP_06336928.1| diaminopimelate epimerase [Staphylococcus aureus A10102]
 gi|295406346|ref|ZP_06816153.1| alanine racemase [Staphylococcus aureus A8819]
 gi|296275259|ref|ZP_06857766.1| alanine racemase [Staphylococcus aureus subsp. aureus MR1]
 gi|297244575|ref|ZP_06928458.1| diaminopimelate epimerase alternative form [Staphylococcus aureus
           A8796]
 gi|54036716|sp|P63483|ALR2_STAAN RecName: Full=Alanine racemase 2
 gi|54040681|sp|P63482|ALR2_STAAM RecName: Full=Alanine racemase 2
 gi|13701196|dbj|BAB42491.1| SA1231 [Staphylococcus aureus subsp. aureus N315]
 gi|14247170|dbj|BAB57561.1| Alanine racemase 2 [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740956|gb|ABQ49254.1| Alanine racemase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946402|gb|ABR52338.1| Alanine racemase [Staphylococcus aureus subsp. aureus JH1]
 gi|156721853|dbj|BAF78270.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253728622|gb|EES97351.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789518|gb|EEV27858.1| alanine racemase [Staphylococcus aureus A9781]
 gi|257839918|gb|EEV64386.1| alanine racemase [Staphylococcus aureus A9763]
 gi|257843487|gb|EEV67894.1| alanine racemase [Staphylococcus aureus A9719]
 gi|257849050|gb|EEV73032.1| alanine racemase 2 [Staphylococcus aureus A9299]
 gi|257850228|gb|EEV74181.1| alanine racemase 2 [Staphylococcus aureus A8115]
 gi|257853621|gb|EEV76580.1| alanine racemase [Staphylococcus aureus A6300]
 gi|257857259|gb|EEV80157.1| alanine racemase 2 [Staphylococcus aureus A6224]
 gi|257863034|gb|EEV85798.1| alanine racemase 2 [Staphylococcus aureus A5937]
 gi|262075311|gb|ACY11284.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282589063|gb|EFB94165.1| diaminopimelate epimerase [Staphylococcus aureus A10102]
 gi|282764889|gb|EFC05014.1| alanine racemase 2 [Staphylococcus aureus A8117]
 gi|285817077|gb|ADC37564.1| Diaminopimelate epimerase [Staphylococcus aureus 04-02981]
 gi|294968934|gb|EFG44956.1| alanine racemase [Staphylococcus aureus A8819]
 gi|297178605|gb|EFH37851.1| diaminopimelate epimerase alternative form [Staphylococcus aureus
           A8796]
 gi|312829794|emb|CBX34636.1| alanine racemase, C-terminal domain protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315131207|gb|EFT87191.1| hypothetical protein CGSSa03_06679 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727451|gb|EGG63907.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 361

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 148/355 (41%), Gaps = 41/355 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASL 196
            L   H++ N K+  +S + +H   AD+      +V+  ++  ++     +G +      
Sbjct: 134 VLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKAL 249
            +S+     G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHDIVQS-LTVKAHVIQVREVQ 249

Query: 250 AGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
           AG+   Y         ++ +AV  IGY DG   T                +  I G   P
Sbjct: 250 AGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYP 297

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           I   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 298 IR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|49483589|ref|YP_040813.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425463|ref|ZP_05601888.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428123|ref|ZP_05604521.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430754|ref|ZP_05607136.1| alanine racemase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433514|ref|ZP_05609872.1| alanine racemase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436355|ref|ZP_05612402.1| alanine racemase [Staphylococcus aureus subsp. aureus M876]
 gi|282903979|ref|ZP_06311867.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C160]
 gi|282905744|ref|ZP_06313599.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908715|ref|ZP_06316533.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910979|ref|ZP_06318781.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914187|ref|ZP_06321974.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M899]
 gi|282919109|ref|ZP_06326844.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C427]
 gi|282924292|ref|ZP_06331966.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C101]
 gi|283958161|ref|ZP_06375612.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293501214|ref|ZP_06667065.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510175|ref|ZP_06668883.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M809]
 gi|293526767|ref|ZP_06671452.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M1015]
 gi|295427912|ref|ZP_06820544.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591127|ref|ZP_06949765.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8]
 gi|49241718|emb|CAG40408.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271920|gb|EEV04058.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274964|gb|EEV06451.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278882|gb|EEV09501.1| alanine racemase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281607|gb|EEV11744.1| alanine racemase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284637|gb|EEV14757.1| alanine racemase [Staphylococcus aureus subsp. aureus M876]
 gi|282313679|gb|EFB44072.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C101]
 gi|282316919|gb|EFB47293.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C427]
 gi|282322255|gb|EFB52579.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M899]
 gi|282324674|gb|EFB54984.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326979|gb|EFB57274.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331036|gb|EFB60550.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595597|gb|EFC00561.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C160]
 gi|283790310|gb|EFC29127.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920839|gb|EFD97902.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M1015]
 gi|291096219|gb|EFE26480.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467119|gb|EFF09637.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M809]
 gi|295128270|gb|EFG57904.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576013|gb|EFH94729.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8]
 gi|312438201|gb|ADQ77272.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195291|gb|EFU25678.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 361

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 148/355 (41%), Gaps = 41/355 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASL 196
            L   H++ N K+  +S + +H   AD+      +V+  ++  ++     +G +      
Sbjct: 134 VLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKAL 249
            +S+     G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHEIVQS-LTVKAHVIQVREVQ 249

Query: 250 AGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
           AG+   Y         ++ +AV  IGY DG   T                +  I G   P
Sbjct: 250 AGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYP 297

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           I   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 298 IR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|319892398|ref|YP_004149273.1| Putative diaminopimelate epimerase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162094|gb|ADV05637.1| Putative diaminopimelate epimerase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 359

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 138/358 (38%), Gaps = 35/358 (9%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
             ++  ++ N    AVVK+NAY  G +        AG+  F  TS+ E V++R   P+A 
Sbjct: 13  LQNVKQVTQNQSVMAVVKNNAYNYGLDFAVQMFQQAGIDTFSTTSLVEAVRIRELAPEAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL 139
           IF++      +     D ++      +P LTFY +  +        L+ +   +R G   
Sbjct: 73  IFLMNATDEFERLRANDIHMT-----LPSLTFYRENKAALAGVKVHLEYENLLHRSGFKT 127

Query: 140 -QEALDFTHNSFNKKLG--QLSLIISHLACADDPSSHVNSVQLERFRTLISHY---KGIE 193
             E L    +         +++ + +H   AD+    +   + E + T++      +G  
Sbjct: 128 KDELLAVLADHEQNPAPKMEITGLWTHFGYADEFDVDMYEKEREAWLTIVETLVKQRGYH 187

Query: 194 ---ASLASSSGILL---GPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAEARIILIR 246
                  +S+           H    R GI+LYG     + S       +T +A +I +R
Sbjct: 188 FDLIHAQNSASYYREGQRVFDHHTHARIGIALYGSRPYASLSPGCITQALTVKANVIQLR 247

Query: 247 KALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
               G+   Y     + +  + +AV  +GY DG   T +  D              I G 
Sbjct: 248 NVQQGDHCGYSFAYTVEQPHTRLAVVDVGYGDGILRTRAQHD------------VSINGK 295

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIG 362
             PI   + M     ++ D++S +  D + ++   D+++DD        N + L  + 
Sbjct: 296 RYPIR-ALMMSHMFVEVDDTVSAK--DSVILYNNSDLRIDDYTFKGVGANSEQLSALN 350


>gi|251810827|ref|ZP_04825300.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876165|ref|ZP_06285032.1| putative alanine racemase [Staphylococcus epidermidis SK135]
 gi|251805662|gb|EES58319.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295190|gb|EFA87717.1| putative alanine racemase [Staphylococcus epidermidis SK135]
 gi|329732928|gb|EGG69273.1| putative alanine racemase [Staphylococcus epidermidis VCU028]
          Length = 357

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 137/358 (38%), Gaps = 35/358 (9%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
           + +   +  N    AVVK+NAY  G E        A +  F  TS+ E +++R   P+A 
Sbjct: 13  YQNAVKVKNNEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIRVRKIAPEAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS- 138
           IF++  ++     ++   ++   + S+    +Y K           L+ +   +R G   
Sbjct: 73  IFLMNPVY--DFDLVKRYDIHMTLPSL---NYYYKYKQNLKGIHVHLEYENLLHRSGFRN 127

Query: 139 LQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           ++E  +    H+  N+    +S I +H   AD+       ++ + +  LI+         
Sbjct: 128 IEEIREVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINTLLNENYHF 187

Query: 197 -----ASSSGILLGPNY---HFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARIILIR 246
                 +S+           H    R GI+LYG      IN+    Q+ +T +  +I +R
Sbjct: 188 DMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQS-LTVKGNVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
               G+   Y    ++  D + +AV  IGY DG   +                +  I G 
Sbjct: 247 DVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKS------------RAKHEAIINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             PI   + M     ++ D   +   D + ++  DI++D+        N + L  +  
Sbjct: 295 RYPIR-ALMMSHMFIEVDD--EVHAQDEVILYNKDIRIDEFTFKGVGANSEQLSAMNH 349


>gi|21283016|ref|NP_646104.1| hypothetical protein MW1287 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486240|ref|YP_043461.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297207946|ref|ZP_06924378.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912030|ref|ZP_07129473.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204455|dbj|BAB95152.1| MW1287 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244683|emb|CAG43116.1| putative alanine racemase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887414|gb|EFH26315.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886276|gb|EFK81478.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 361

 Score =  191 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 148/355 (41%), Gaps = 41/355 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLVPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASL 196
            L   H++ N K+  +S + +H   AD+      +V+  ++  ++     +G +      
Sbjct: 134 VLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKAL 249
            +S+     G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHDIVQS-LTVKAHVIQVREVQ 249

Query: 250 AGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
           AG+   Y         ++ +AV  IGY DG   T                +  I G   P
Sbjct: 250 AGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYP 297

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           I   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 298 IR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|319401318|gb|EFV89529.1| putative alanine racemase [Staphylococcus epidermidis FRI909]
          Length = 357

 Score =  191 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 136/358 (37%), Gaps = 35/358 (9%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
           + +   +  N    AVVK+NAY  G E        A +  F  TS+ E +++R   P+A 
Sbjct: 13  YQNAVKVKNNEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIQVRKIAPEAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS- 138
           IF++  ++     ++   ++   + S+    +Y K           L+ +   +R G   
Sbjct: 73  IFLMNPVY--DFDLVKRYDIHMTLPSL---NYYYKYKQDLKGIHVHLEYENLLHRSGFRN 127

Query: 139 LQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           ++E       H+  N+    +S I +H   AD+       ++ + +  LI+         
Sbjct: 128 IEEIRKVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINTLLNENYHF 187

Query: 197 -----ASSSGILLGPNY---HFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARIILIR 246
                 +S+           H    R GI+LYG      IN+    Q+ +T +  +I +R
Sbjct: 188 DMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQS-LTVKGNVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
               G+   Y    ++  D + +AV  IGY DG   +                +  I G 
Sbjct: 247 DVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKS------------RAKHEAIINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             PI   + M     ++ D   +   D + ++  DI++D+        N + L  +  
Sbjct: 295 RYPIR-ALMMSHMFIEVDD--EVHAQDEVILYNKDIRIDEFTFKGVGANSEQLSAMNH 349


>gi|258423662|ref|ZP_05686550.1| alanine racemase 2 [Staphylococcus aureus A9635]
 gi|257846160|gb|EEV70186.1| alanine racemase 2 [Staphylococcus aureus A9635]
          Length = 361

 Score =  191 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 149/355 (41%), Gaps = 41/355 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASL 196
            L   H++ N K+  +S + +H   AD+      +V+  ++  ++     +G +      
Sbjct: 134 VLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMDIVEALLSEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKAL 249
            +S+     G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHDIVQS-LTVKAHVIQVREVQ 249

Query: 250 AGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
           AG+   Y         ++ +AV  IGY DG   T                +  I G   P
Sbjct: 250 AGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYP 297

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           I   + M     ++ D  ++   D + ++  DI++D+        N + L  +  
Sbjct: 298 IR-ALMMSHMFVEVDD--NVHAQDDVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|314933577|ref|ZP_07840942.1| alanine racemase family protein [Staphylococcus caprae C87]
 gi|313653727|gb|EFS17484.1| alanine racemase family protein [Staphylococcus caprae C87]
          Length = 358

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 140/358 (39%), Gaps = 34/358 (9%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
           + +   +       AVVK+NAY  G E        AG+Q F  TS++E +++R   P A 
Sbjct: 13  YQNAVKVRNEQSIMAVVKNNAYHYGLEFSVKEFLKAGIQTFSTTSLKEAIRVREIAPHAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-- 137
           IF++  ++  +   + +  +   + S+   T+Y +      +    L+ +   +R G   
Sbjct: 73  IFLMNAVY--EFDTVREYEIHMTLPSL---TYYYEHKEDLRNIHVHLEFENLLHRSGFKD 127

Query: 138 --SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI--- 192
              L E L+    + +     +S I +H   AD+       ++ + +  +++   G    
Sbjct: 128 LEELHEVLEDHAQNKSDNKMIISGIWTHFGYADEFDVPEYDIERQAWLNVLNTLLGEGYS 187

Query: 193 --EASLASSSGILLGPN---YHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEARIILIR 246
                  +S+           H    R GI+LYG       K   +Q  +T +  +I +R
Sbjct: 188 FDMIHAQNSASFYREGQVVLPHHTHARVGIALYGSRPYSKLKESEIQQSLTVKGNVIQVR 247

Query: 247 KALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +  AG+   Y    + T++ + +AV  IGY DG   +                +  I G 
Sbjct: 248 EVNAGDYCGYSFAYEATKNQTQLAVVDIGYGDGILKS------------RAQHEAIINGK 295

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             PI   + M     ++ D   +   D + ++  DI++D+        N + L  +  
Sbjct: 296 RYPIR-ALMMSHMFVEVDD--EVHAQDEVVLYNNDIRIDEFTFKGVGANSEQLSAMNH 350


>gi|329729391|gb|EGG65797.1| putative alanine racemase [Staphylococcus epidermidis VCU144]
          Length = 357

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 137/358 (38%), Gaps = 35/358 (9%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
           + +   +  N    AVVK+NAY  G E        A +  F  TS+ E +++R   P+A 
Sbjct: 13  YQNAVKVKNNEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIRVRKIAPEAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS- 138
           IF++  ++     ++   ++   + S+    +Y K           L+ +   +R G   
Sbjct: 73  IFLMNPVY--DFDLVKRYDIHMTLPSL---NYYYKYKQDLKGIHVHLEYENLLHRSGFRN 127

Query: 139 LQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           ++E  +    H+  N+    +S I +H   AD+       ++ + +  LI+         
Sbjct: 128 IEEIREVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINTLLNENYHF 187

Query: 197 -----ASSSGILLGPNY---HFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARIILIR 246
                 +S+           H    R GI+LYG      IN+    Q+ +T +  +I +R
Sbjct: 188 DMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQS-LTVKGNVIQVR 246

Query: 247 KALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
               G+   Y    ++  D + +AV  IGY DG   +                +  I G 
Sbjct: 247 YVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKS------------RAKHEAIINGK 294

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             PI   + M     ++ D   +   D + ++  DI++D+        N + L  +  
Sbjct: 295 RYPIR-ALMMSHMFIEVDD--EVHAQDEVILYNKDIRIDEFTFKGVGANSEQLSAMNH 349


>gi|283470613|emb|CAQ49824.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus ST398]
          Length = 361

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 147/355 (41%), Gaps = 41/355 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLSGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196
            L   H++ N K+  +S + +H   AD+      +V+  ++  ++       Y+      
Sbjct: 134 VLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVESLLSEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKAL 249
            +S+     G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHAIVQS-LTVKANVIQVREVQ 249

Query: 250 AGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
           AG+   Y         ++ +AV  IGY DG   T                +  I G   P
Sbjct: 250 AGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYP 297

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           I   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 298 IR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|253732036|ref|ZP_04866201.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724227|gb|EES92956.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 361

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 148/355 (41%), Gaps = 41/355 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASL 196
            L   H++ N K+  +S + +H   AD+      +V+  ++  ++     +G +      
Sbjct: 134 VLKDHHHNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKAL 249
            +S+     G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHDIVQS-LTVKAHVIQVREVH 249

Query: 250 AGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
           AG+   Y         ++ +AV  IGY DG   T                +  I G   P
Sbjct: 250 AGDYCGYSFAFEVTKNNTKLAVIDIGYGDGILRT------------RAKHEALINGKRYP 297

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           I   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 298 IR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|168210753|ref|ZP_02636378.1| alanine racemase family protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711187|gb|EDT23369.1| alanine racemase family protein [Clostridium perfringens B str.
           ATCC 3626]
          Length = 350

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 131/341 (38%), Gaps = 26/341 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + +    ++L  ++NN + +  L  N +  AV+K +AYGLG ++IA  + +  V    V 
Sbjct: 2   SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKEIAEFIEDK-VDIIAVG 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +++E + L        I +L  +    +      NLI  + +   L    K         
Sbjct: 61  NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKE----TKKR 114

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG NR+G+   +   F     N+    ++  I +HL  A D +      Q+E F
Sbjct: 115 VHIYVDTGMNRMGIKPNKLDSFIERIKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172

Query: 183 RTLISHYKG--IEASLASSSGI----LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           ++ +  YK         +SS I    L          R G  LYG    I  +  ++   
Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGY---IGFNKGIKKTY 229

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG--YADGYPLTLSG---LDSEHS 291
              A+ +   K   G+ V YG   K  +D  I +   G  +  G    +      D    
Sbjct: 230 EYYAKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRM 289

Query: 292 PSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEV 330
                  +  I      V ILGK+ M++T+  + +     V
Sbjct: 290 IYRRFKERSVIFNNNVPVKILGKVNMNITIISMENCSKDSV 330


>gi|11991216|gb|AAG42250.1|AF306669_7 alanine racemase [Staphylococcus aureus]
          Length = 336

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 146/348 (41%), Gaps = 41/348 (11%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
            AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  ++  +  
Sbjct: 1   MAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAVY--EFD 58

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQEALDFTHN 148
           ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E L   H+
Sbjct: 59  LVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKEVLKDHHH 115

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASLASSS--- 200
           + N K+  +S + +H   AD+      +V+  ++  ++     +G +       +S+   
Sbjct: 116 NQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIHAQNSASFY 174

Query: 201 --GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKALAGELVSY 256
             G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  AG+   Y
Sbjct: 175 REGQILLP--HHTHARVGIALYGSRPYSSLNQHDIVQS-LTLKAHVIQVREVQAGDYCGY 231

Query: 257 GGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
                    ++ +AV  IGY DG   T                +  I G   PI   + M
Sbjct: 232 SFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYPIR-ALMM 278

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 279 SHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 324


>gi|289550806|ref|YP_003471710.1| Putative alternative form of diaminopimelate epimerase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180338|gb|ADC87583.1| Putative alternative form of diaminopimelate epimerase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 358

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 139/367 (37%), Gaps = 37/367 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++     NN  ++     N    AVVK+NAY  G E        AG+  F  TS++E V+
Sbjct: 7   VNSDIFFNNVVTVK---NNQPIMAVVKNNAYHYGLEYAVNMFLKAGINTFSTTSLKEAVR 63

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +R   P+A IF++  ++      I   N I +  ++P L +Y    S        L+ + 
Sbjct: 64  IRKLAPKATIFLMNAVYDFD---IVRHNRIHM--TLPSLQYYYANKSNLYDINVHLEYEN 118

Query: 131 GFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSVQLERF 182
             +R G      L+E L     +       ++ + +H   AD+             L+  
Sbjct: 119 LLHRSGFKNLSELREVLKDHEQNNQPHKMHITGLWTHFGYADEFDVPEYDTEKRAWLKVL 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHF----QLTRPGISLYGGTD-KINKSHPMQTVVT 237
            TL++     +   A +S       +         R GI+LYG       K   ++  +T
Sbjct: 179 NTLLAEGYTFDMIHAQNSASFYREQHQVLSNHTHARVGIALYGSRPYSSLKPSEIKQALT 238

Query: 238 AEARIILIRKALAGELVSYGGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
            +A +I +R+   G+   Y    +     + +AV  IGY DG   + +  D         
Sbjct: 239 VKANVIQVREVNKGDYCGYSFAYECKNHHTRLAVVDIGYGDGILKSRAQHD--------- 289

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                I G   PI   + M     ++ + +     D + ++  DI++D+        N +
Sbjct: 290 ---VIINGKRYPIR-ALMMSHMFVEVDELVHAR--DEVVLYNNDIRIDEFTFKGVGANSE 343

Query: 357 LLVRIGT 363
            L  +  
Sbjct: 344 QLSAMNH 350


>gi|302333011|gb|ADL23204.1| alanine racemase family protein [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 361

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 146/361 (40%), Gaps = 41/361 (11%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
             +  A+  N    AVVK+NAY    E       +AG+  F  TS+ E +K+R   P A 
Sbjct: 13  LQNAIAVKNNQPIMAVVKNNAYHYDLEFAVSQFIHAGIDTFSTTSLREAIKVRQLAPDAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-- 137
           IF++  ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G   
Sbjct: 73  IFLMNAVY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKD 127

Query: 138 --SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYK 190
              ++E L   H + N K+  +S + +H   AD+      +V+  ++  ++       Y+
Sbjct: 128 LNEIKEVLKDHHQNQNAKMI-ISGLWTHFGYADEFDVPDYNVERSQWMEIVETLLFEGYQ 186

Query: 191 GIEASLASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARII 243
                  +S+     G  L P  H    R GI+LYG      +N+   +Q+ +T +A +I
Sbjct: 187 FDLIHAQNSASFYREGQELLP--HHTHARVGIALYGSRPYSSLNQHDIVQS-LTVKANVI 243

Query: 244 LIRKALAGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302
            + +  AG+   Y         ++ +AV  IGY DG   T                +  I
Sbjct: 244 QVHEVQAGDYCGYSFAFEVTKTNTKLAVVDIGYGDGILRT------------RAKHEALI 291

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362
            G   PI   + M     ++    ++   D + ++  DI++D+        N + L  + 
Sbjct: 292 NGKRYPIR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMN 348

Query: 363 T 363
            
Sbjct: 349 H 349


>gi|223043272|ref|ZP_03613319.1| alanine racemase 2 [Staphylococcus capitis SK14]
 gi|222443483|gb|EEE49581.1| alanine racemase 2 [Staphylococcus capitis SK14]
          Length = 358

 Score =  189 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 140/358 (39%), Gaps = 34/358 (9%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79
           + +   +       AVVK+NAY  G E        AG+Q F  TS++E +++R   P A 
Sbjct: 13  YQNAVKVRNEQSIMAVVKNNAYHYGLEFSVKEFLKAGIQTFSTTSLKEAIRVREIAPHAT 72

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-- 137
           IF++  ++  +   + +  +   + S+   T+Y +      +    L+ +   +R G   
Sbjct: 73  IFLMNAVY--EFDTVREYEIHMTLPSL---TYYYEHKEDLRNIHVHLEFENLLHRSGFKD 127

Query: 138 --SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEAS 195
              L E L+    + +     +S I +H   AD+       ++ + +  +++       S
Sbjct: 128 LEELHEVLEDHAQNKSDNKMIISGIWTHFGYADEFDVPEYDIERQAWLNVLNTLLDEGYS 187

Query: 196 ----LASSSGILLGPN----YHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEARIILIR 246
                A +S            H    R GI+LYG       K   +Q  +T +  +I +R
Sbjct: 188 FDLIHAQNSASFYREGQVVLPHHTHARVGIALYGSRPYSKLKESEIQQSLTVKGNVIQVR 247

Query: 247 KALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +  AG+   Y    + T++ + +AV  IGY DG   +                +  I G 
Sbjct: 248 EVNAGDYCGYSFAYEATKNQTQLAVVDIGYGDGILKS------------RAQHEAIINGK 295

Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
             PI   + M     ++ D   +   D + ++  DI++D+        N + L  +  
Sbjct: 296 RYPIR-ALMMSHMFVEVDD--EVHAQDEVVLYNNDIRIDEFTFKGVGANSEQLSAMNH 350


>gi|315658301|ref|ZP_07911173.1| alanine racemase [Staphylococcus lugdunensis M23590]
 gi|315496630|gb|EFU84953.1| alanine racemase [Staphylococcus lugdunensis M23590]
          Length = 358

 Score =  189 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 139/367 (37%), Gaps = 37/367 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++     NN  ++     N    AVVK+NAY  G E        AG+  F  TS++E V+
Sbjct: 7   VNSDIFFNNVVTVK---NNQPIMAVVKNNAYHYGLEYAVNMFLKAGINTFSTTSLKEAVR 63

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +R   P+A IF++  ++      I   N I +  ++P L +Y    S        L+ + 
Sbjct: 64  IRKLAPKATIFLMNAVYDFD---IVRHNRIHM--TLPSLQYYYANKSNLYDINVHLEYEN 118

Query: 131 GFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSVQLERF 182
             +R G      L+E L     +       ++ + +H   AD+             L+  
Sbjct: 119 LLHRSGFKNLSELREVLKDHAQNNQPHKMHITGLWTHFGYADEFDVPEYDTEKRAWLKVL 178

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHF----QLTRPGISLYGGTD-KINKSHPMQTVVT 237
            TL++     +   A +S       +         R GI+LYG       K   ++  +T
Sbjct: 179 NTLLAEGYTFDMIHAQNSASFYREQHQVLSNHTHARVGIALYGSRPYSSLKPSEIKQALT 238

Query: 238 AEARIILIRKALAGELVSYGGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
            +A +I +R+   G+   Y    +     + +AV  IGY DG   + +  D         
Sbjct: 239 VKANVIQVREVNKGDYCGYSFAYECKNHHTRLAVVDIGYGDGILKSRAQHD--------- 289

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
                I G   PI   + M     ++ + +     D + ++  DI++D+        N +
Sbjct: 290 ---VIINGKRYPIR-ALMMSHMFVEVDELVHAR--DEVVLYNNDIRIDEFTFKGVGANSE 343

Query: 357 LLVRIGT 363
            L  +  
Sbjct: 344 QLSAMNH 350


>gi|307243449|ref|ZP_07525605.1| putative alanine racemase [Peptostreptococcus stomatis DSM 17678]
 gi|306493173|gb|EFM65170.1| putative alanine racemase [Peptostreptococcus stomatis DSM 17678]
          Length = 358

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 72/351 (20%), Positives = 128/351 (36%), Gaps = 34/351 (9%)

Query: 5   EFLRLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           E  +L+IDL A+  N    +    G     AVVK+NAY  G E+     Y AGV+ F  T
Sbjct: 2   ENAKLRIDLGAIYKNATRVLKETDGG--LIAVVKNNAYNFGLERAVETFYKAGVRVFATT 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           S++E +K+R       I  L      +  ++    +   I+++    F    +       
Sbjct: 60  SLKECIKMRDLYEDITIISLN--PAKEFDLLRKYRISTAIANLD---FVKNNLEDMKGIS 114

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-SVQLERF 182
           + L+      R G   +E +    +        +  + +H + AD+         + E +
Sbjct: 115 WQLEWAGSMRRSGCRSKEEMSEILSLARDNNIDIEGVWTHFSWADEFDQDKTYEREREIW 174

Query: 183 RTLISHYKGIE----ASLASSSGI----LLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234
              ++  K +         +S+      LL  + H    R GI LYG          +  
Sbjct: 175 LDALAAAKRVHKFKFIHAQNSASFARDGLLEDHSH---VRLGIYLYGCLPYRECPKKIDH 231

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            ++  AR++ I     G+ + Y         + +AV  +GY DG   +            
Sbjct: 232 AISLSARVLSIIHLDPGQSIGYCSSFVAKEPTDLAVINMGYGDGLLRS-----------R 280

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345
             G    I     P++    M      I D   + +GD +  +G DI + +
Sbjct: 281 IRGHDLEINKRRYPLVS--LMMSHSVAIIDEA-VTLGDEVYFYGHDIPVHE 328


>gi|110799046|ref|YP_695763.1| alanine racemase family protein [Clostridium perfringens ATCC
           13124]
 gi|182626219|ref|ZP_02953977.1| alanine racemase family protein [Clostridium perfringens D str.
           JGS1721]
 gi|110673693|gb|ABG82680.1| alanine racemase family protein [Clostridium perfringens ATCC
           13124]
 gi|177908483|gb|EDT71016.1| alanine racemase family protein [Clostridium perfringens D str.
           JGS1721]
          Length = 350

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 131/341 (38%), Gaps = 26/341 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + +    ++L  ++NN + +  L  N +  AV+K +AYGLG +KIA  + +  V    V 
Sbjct: 2   SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKKIAEFIEDK-VDIIAVG 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +++E + L        I +L  +    +      NLI  + +   L    K         
Sbjct: 61  NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKE----TKKR 114

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG NR+G+   +   F     N+    ++  I +HL  A D +      Q+E F
Sbjct: 115 VHIYVDTGMNRMGIKPNKLDSFIERIKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172

Query: 183 RTLISHYKG--IEASLASSSGI----LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           ++ +  YK         +SS I    L          R G  LYG    I  +  ++   
Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGY---IGFNKGIKKTY 229

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG--YADGYPLTLSG---LDSEHS 291
              A+ +   K   G+ V YG   K  +D  I +   G  +  G    +      D    
Sbjct: 230 EYYAKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRM 289

Query: 292 PSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEV 330
                  +  I      V ILGK+ M++T+  + +     V
Sbjct: 290 IYRRFKERSVIFNNNVPVKILGKVNMNITIISMENCSKDSV 330


>gi|218671884|ref|ZP_03521553.1| alanine racemase protein [Rhizobium etli GR56]
          Length = 160

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 103/157 (65%), Gaps = 2/157 (1%)

Query: 216 GISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275
           GI+LYGG      ++PM+ V TAEARII +R   AGE VSYG   +L RDS +A+ + GY
Sbjct: 1   GIALYGGEAVCGMANPMRPVATAEARIIQVRTVGAGETVSYGRALQLPRDSRLAIVSAGY 60

Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDY 333
           ADGY  + S        +V  GG+GFI G+ VP+ G+ITMD+T+FD+TD     +  GDY
Sbjct: 61  ADGYMRSQSSGGVPLRQAVPQGGQGFIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDY 120

Query: 334 IQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +++FG ++ LDDVA A+GT  Y++L  +G R+ + Y 
Sbjct: 121 VELFGKNMPLDDVARAAGTIGYEILTSMGLRHERRYV 157


>gi|73662660|ref|YP_301441.1| alanine racemase 2 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495175|dbj|BAE18496.1| alanine racemase 2 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 357

 Score =  188 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 149/366 (40%), Gaps = 36/366 (9%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ++    K N  ++     + +  AVVK+NAY  G E       + G+  F  TS++E ++
Sbjct: 7   VNRQLFKENAKNVKQ---DNQIMAVVKNNAYHYGLEFAVEQFLDIGINTFSTTSLKEAIR 63

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +R   P A IF++  ++  +   I +  +   + S+   +FY + ++        L+ + 
Sbjct: 64  IRKLAPNATIFLMNAVY--EFDKIRENQIQMTLPSL---SFYYENINDLYDIQVHLEYEN 118

Query: 131 GFNRLGL-SLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +R GL +L E  +  H+    K      +S + +H   AD+      +++   +  ++
Sbjct: 119 LLHRSGLKTLDEIKEVIHHHNQNKNEHKMHISGLWTHFGYADEFDVPDYNIERAAWLEIV 178

Query: 187 S-------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTA 238
                    ++ I A  ++S     G   +    R GI+LYG           +Q  +T 
Sbjct: 179 DTLLDEGYEFEMIHAQNSASYYREQGVLPNHTHARIGIALYGSRPYSTINESDIQQSLTV 238

Query: 239 EARIILIRKALAGELVSYGGQKKLTR-DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
           +  +I +R+  AGE   Y    + T+ ++ +AV  +GY DG                   
Sbjct: 239 KGNVIQVREVNAGEFCGYSFAFEATKNNTKLAVVDVGYGDGILKA------------RAQ 286

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
            +  I     PI   + M     ++ DS++ +  D + ++   I++D+        N + 
Sbjct: 287 HEALINHKRYPIR-ALMMSHMFVEVDDSVNAQ--DEVILYNNHIRVDEFTFKGVGANSEQ 343

Query: 358 LVRIGT 363
           L  +  
Sbjct: 344 LSAMNH 349


>gi|18310043|ref|NP_561977.1| alanine racemase [Clostridium perfringens str. 13]
 gi|18144722|dbj|BAB80767.1| probable alanine racemase [Clostridium perfringens str. 13]
          Length = 350

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 131/341 (38%), Gaps = 26/341 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + +    ++L  ++NN + +  L  N +  AV+K +AYGLG ++IA  + +  V    V 
Sbjct: 2   SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKEIAEFIEDK-VDIIAVG 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +++E + L        I +L  +    +      NLI  + +   L    K         
Sbjct: 61  NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKE----TKKR 114

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG NR+G+   +   F     N+    ++  I +HL  A D +      Q+E F
Sbjct: 115 VHIYVDTGMNRMGIKPNKLDSFIERVKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172

Query: 183 RTLISHYKG--IEASLASSSGI----LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           ++ +  YK         +SS +    L          R G  LYG    I  +  ++   
Sbjct: 173 KSTVEKYKDKVRIIHCMASSAVVNDQLRKACDFTTGARAGNVLYGY---IGFNKGIKKTY 229

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG--YADGYPLTLSG---LDSEHS 291
              A+ +   K   G+ V YG   K  +D  I +   G  +  G    +      D    
Sbjct: 230 EYYAKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRM 289

Query: 292 PSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEV 330
                  +  I      V ILGK+ M++T+  + +     V
Sbjct: 290 IYRRFKERSVIFNNNVPVKILGKVNMNITIISMENCSKDSV 330


>gi|20137235|sp|Q9F9L1|ALR_PISSA RecName: Full=Alanine racemase
 gi|10441347|gb|AAG17001.1|AF184152_4 alanine racemase [Piscirickettsia salmonis]
          Length = 166

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 14/175 (8%)

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIILIRKALAGELV 254
           +S+ I       +   RPGI LYG +   +K      +Q V+   +R+I +++   GE V
Sbjct: 1   NSAAIFNFSYERYDWVRPGIMLYGISPFADKNGVDLELQPVMHVVSRLISVKQLRQGESV 60

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            YG   +   D  + + ++GY DGYP   +            G    ++G    ++G+++
Sbjct: 61  GYGATWQCPEDMQVGILSLGYGDGYPRLAA-----------SGTPFLVRGQRCALIGRVS 109

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           MDM   D+       VG+ + ++G D+ ++++A   GT  Y+L+  +  R    +
Sbjct: 110 MDMIAIDLRRCPDAGVGEAVTVWGQDLPVEEIARHVGTIAYELVCNMPLRAPYIW 164


>gi|282916665|ref|ZP_06324423.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus D139]
 gi|282319152|gb|EFB49504.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus D139]
          Length = 361

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 145/355 (40%), Gaps = 41/355 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           +  N    AVVK+NAY    E       +AG+  F  TS+ E +++R     A IF++  
Sbjct: 19  VKNNQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAQDATIFLMNA 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQE 141
           ++  +  ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E
Sbjct: 79  VY--EFDLVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKE 133

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASL 196
            L   H + N K+  +S + +H   AD+      +V+  ++  ++     +G +      
Sbjct: 134 VLKDHHQNQNAKMI-ISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIHA 192

Query: 197 ASSS-----GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKAL 249
            +S+     G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  
Sbjct: 193 QNSASFYREGQILLP--HHTHARVGIALYGSRPYSSLNQHDIVQS-LTVKAHVIQVREVQ 249

Query: 250 AGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            G+   Y         ++ +AV  IGY DG   T                +  I G   P
Sbjct: 250 VGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYP 297

Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           I   + M     ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 298 IR-ALMMSHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 349


>gi|298694693|gb|ADI97915.1| probable alanine racemase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 336

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 145/348 (41%), Gaps = 41/348 (11%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
            AVVK+NAY    E       +AG+  F  TS+ E +++R   P A IF++  ++  +  
Sbjct: 1   MAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPNATIFLMNAVY--EFD 58

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL----SLQEALDFTHN 148
           ++ +  +   + S+   T+Y    +        L+ +   +R G      ++E L   H 
Sbjct: 59  LVREHQIHMTLPSL---TYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKEVLKDHHQ 115

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASLASSS--- 200
           + N K+  +S + +H   AD+      +++  ++  ++     +G +       +S+   
Sbjct: 116 NQNAKMI-ISGLWTHFGYADEFDVSDYNIERSQWMEIVEALLSEGYQFDLIHAQNSASFY 174

Query: 201 --GILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKALAGELVSY 256
             G +L P  H    R GI+LYG      +N+   +Q+ +T +A +I +R+  AG+   Y
Sbjct: 175 REGQILLP--HHTHARVGIALYGSRPYSSLNQHEIVQS-LTVKAHVIQVREVQAGDYCGY 231

Query: 257 GGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315
                    ++ +AV  IGY DG   T                +  I G   PI   + M
Sbjct: 232 SFAFEVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYPIR-ALMM 278

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                ++    ++   D + ++  DI++D+        N + L  +  
Sbjct: 279 SHMFVEVDG--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 324


>gi|294853873|ref|ZP_06794545.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
 gi|294819528|gb|EFG36528.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
          Length = 309

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 103/186 (55%), Gaps = 2/186 (1%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL AL++N+ ++       RTAAVVK +AYGLG  ++APA Y AG +DFFV  + E 
Sbjct: 21  LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
           V L+ +  P A ++VL G+ PG E       ++PV++S+ Q+  ++ L    G   P  L
Sbjct: 81  VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           Q DTG +RLGLS +E      N        +   ISHLA  D+P +  N+ QL +   L+
Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200

Query: 187 SHYKGI 192
           +    +
Sbjct: 201 ARLPKL 206


>gi|154148940|ref|YP_001406018.1| alanine racemase [Campylobacter hominis ATCC BAA-381]
 gi|153804949|gb|ABS51956.1| alanine racemase [Campylobacter hominis ATCC BAA-381]
          Length = 336

 Score =  187 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 139/370 (37%), Gaps = 51/370 (13%)

Query: 10  KI--DLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +I  D +A  +N   +   L G  +   + KDN+YG G  +IA      G++   V S  
Sbjct: 3   EILLDKSAFLSNLTKISQKLGGKEKIMLIAKDNSYGHGSAQIAGIAREFGIKKAVVKSEM 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E  ++        I +L  I  G EK  F   +             S            +
Sbjct: 63  EAEQI--AEFYDEILILSHIPTGCEKPDFSYAI----------NDMSHFSKIKNGSKVHI 110

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            VDT  +R G+  ++ LD       +    L    +H   +D+  S    VQ E +R   
Sbjct: 111 SVDTLMHRNGILPEQ-LDDALRLVRENHLNLGGFYTHFRASDEIGSDFF-VQRENWRNFK 168

Query: 187 SHYK--------GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238
              +         +     +S+ I     +     R G++ +G   + ++   ++ V++ 
Sbjct: 169 ISAQKKCKNLGFNVVFHSCNSAAIERSEEFSDDFARVGMAQFGYF-QFSEILGLKPVLSL 227

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            A  I  R    GE V YGG  +   D LI+   +GY DG                   G
Sbjct: 228 YADRISSRLLKKGERVGYGGVFEAPCDILISTYDLGYGDGLLR--------------YNG 273

Query: 299 KGFIK-GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
           KG ++ G    ILGK++MD          S + G+ + +F  D ++   A    T  Y++
Sbjct: 274 KGDLRLGNNEKILGKMSMDSFA-------SKDAGERVCVF-DDARV--WARFFNTIEYEI 323

Query: 358 LVRIGTRYAK 367
           LV++     +
Sbjct: 324 LVKLSANIKR 333


>gi|168217469|ref|ZP_02643094.1| alanine racemase family protein [Clostridium perfringens NCTC 8239]
 gi|182380489|gb|EDT77968.1| alanine racemase family protein [Clostridium perfringens NCTC 8239]
          Length = 350

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 131/341 (38%), Gaps = 26/341 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + +    ++L  ++NN + +  L  N +  AV+K +AYGLG +KIA  + +  V    V 
Sbjct: 2   SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKKIAEFIEDK-VDIIAVG 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +++E + L        I +L  +    +      NLI  + +   L    K         
Sbjct: 61  NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKE----TKKR 114

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG NR+G+   +   F     N+    ++  I +HL  A D +      Q+E F
Sbjct: 115 VHIYVDTGMNRMGIKPNKLDSFIERVKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172

Query: 183 RTLISHYKG--IEASLASSSGILLGP----NYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           ++ +  YK         +SS I+              R G  LYG    I  +  ++   
Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLKKACDFTTGARAGNVLYGY---IGFNKGIKKTY 229

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG--YADGYPLTLSG---LDSEHS 291
              A+ +   K   G+ V YG   K  +D  I +   G  +  G    +      D    
Sbjct: 230 EYYAKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRM 289

Query: 292 PSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEV 330
                  +  I      V ILGK+ M++T+  + +     V
Sbjct: 290 IYRRFKERSVIFNNNVPVKILGKVNMNITIISMENCSKDSV 330


>gi|242373698|ref|ZP_04819272.1| alanine racemase 2 [Staphylococcus epidermidis M23864:W1]
 gi|242348666|gb|EES40268.1| alanine racemase 2 [Staphylococcus epidermidis M23864:W1]
          Length = 358

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 138/367 (37%), Gaps = 37/367 (10%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D  A   N  ++          AVVK+NAY  G E        AG+  F  TS++E V+
Sbjct: 7   VDTEAFYQNAVNVR---NEQPIMAVVKNNAYHYGLEFAVKQFLKAGINTFSTTSLKEAVR 63

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +R   P A IF++  ++      + +  +   + S+    +Y +           L+ + 
Sbjct: 64  VREIAPHATIFLMNAVY--DFDTVREYQIHMTLPSL---VYYYEYKEDLKGIHVHLEFEN 118

Query: 131 GFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
             +R G      L E L+    + N +   +S + +H   AD+       ++ E +  ++
Sbjct: 119 LLHRSGFKNLDELHEVLEDHAQNDNSEKMIISGLWTHFGYADEFDVPEYGIEREAWLNVL 178

Query: 187 -----SHYKGIEASLASSSGILLGPN---YHFQLTRPGISLYGGTDKINKSH-PMQTVVT 237
                  Y        +S+           +    R GI+LYG           +Q  +T
Sbjct: 179 NTLLEEGYTFEMIHAQNSASYYREGQQVLPYHTHARVGIALYGSRPYRKLDTSRIQQSLT 238

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296
            +  +I  R+  AG+   Y    + T+D + +AV  +GY DG   + +            
Sbjct: 239 VKGNVIQTREVNAGDYCGYSFAFEATKDHTRLAVVDVGYGDGILKSRARH---------- 288

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356
             +  I G   PI   + M     ++ D   +   D + ++  DI++D+        N +
Sbjct: 289 --EAMINGKRYPIR-ALMMSHMFVEVDD--EVHAQDEVVLYNNDIRIDEFTFKGVGANSE 343

Query: 357 LLVRIGT 363
            L  +  
Sbjct: 344 QLSAMNH 350


>gi|168207987|ref|ZP_02633992.1| alanine racemase family protein [Clostridium perfringens E str.
           JGS1987]
 gi|170660702|gb|EDT13385.1| alanine racemase family protein [Clostridium perfringens E str.
           JGS1987]
          Length = 350

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 130/336 (38%), Gaps = 26/336 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + +    ++L  ++NN + +  L  N +  AV+K +AYGLG ++IA  + +  V    V 
Sbjct: 2   SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKEIAEFIEDK-VDIIAVG 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +++E + L        I +L  +    +      NLI  + +   L    K         
Sbjct: 61  NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKE----TKKR 114

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG NR+G+   +   F     N+    ++  I +HL  A D +      Q+E F
Sbjct: 115 VHIYVDTGMNRMGIKSNKLDSFIERVKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172

Query: 183 RTLISHYKG--IEASLASSSGI----LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           ++ +  Y+         +SS I    L          R G  LYG    I  +  ++   
Sbjct: 173 KSTVEKYRDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGY---IGFNKGIKKTY 229

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG--YADGYPLTLSG---LDSEHS 291
              A+ +   K   G+ V YG   K  +D  I +   G  +  G    +      D    
Sbjct: 230 EYYAKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRM 289

Query: 292 PSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDS 325
                  +  I      V ILGK+ M++T+  + + 
Sbjct: 290 IYRRFKERSVIFNNNVPVKILGKVNMNITIISMENC 325


>gi|237736823|ref|ZP_04567304.1| LOW QUALITY PROTEIN: alanine racemase [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420685|gb|EEO35732.1| LOW QUALITY PROTEIN: alanine racemase [Fusobacterium mortiferum
           ATCC 9817]
          Length = 256

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 22/260 (8%)

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSH 173
              +     +++DTG  RLG   +E          +    +  I SHL+ AD     S  
Sbjct: 1   KNNLKVGIHIKIDTGMGRLGFLPEEGERVVDYCL-ENGINIMGIYSHLSDADGFNRESDD 59

Query: 174 VNSVQLERFRTLISHYKGIEA-SLASSSGILLGPN-YHFQLTRPGISLYGGTDKINKSHP 231
               Q+++F+    +   ++   + +S GIL         + R GI +YG          
Sbjct: 60  YTETQIKKFQIFEKYKDKVKYLHILNSGGILRFNEEISGNIVRAGICMYGMIANYRVE-D 118

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           ++ V   + +I+ IR       +SYG +  L +    A   +GYADG     S       
Sbjct: 119 LKRVFCVKTKILSIRTVEDDSFISYGRKYVLHKGETFATIGMGYADGIKKEFSNKS---- 174

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALA 349
                     I+G   PI+G+I MDM M  I +S+  ++  G  + +   DI ++++ + 
Sbjct: 175 -------YVIIEGEKCPIIGEICMDMCMVKIPESIKDKISLGTEVIVVRDDI-IEEINIE 226

Query: 350 SGTTNYDLLVRIGTRYAKFY 369
               ++D+L  IG R  + Y
Sbjct: 227 HK-CSWDILTGIGRRVYRVY 245


>gi|254875861|ref|ZP_05248571.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254841882|gb|EET20296.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 321

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 29/342 (8%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
             +VK NAYG+G E I     +  V  + +  ++E   L+       I  L GI+     
Sbjct: 1   MFIVKANAYGIGIENIYKVTNDL-VDAYGIARIDEYYVLKNLGCTKDIVFLSGIYAECFD 59

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
                N+IP++S+V  +  Y K      S    L  D G  R G    + +         
Sbjct: 60  FKIPKNVIPILSNVLLIKDYIKYEDD-KSKQVMLDFDCGMGRFGFYRDDFIKHLDMLKIS 118

Query: 153 KLGQLSLIISHLA---CADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
               + ++ SH+       D S       L     L++    ++ + ++S   L   ++ 
Sbjct: 119 GFSNI-ILFSHIPTGYNGYDRSKKYIDKIL-----LLAEETKLKYTFSNSPVSLFDTDFL 172

Query: 210 FQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
            +  R   ++ G   +  +   ++  ++ +A II IR    GE +SYG +    +D+ +A
Sbjct: 173 QEYIRSSSAVLGYDQEPKE---IKFSLSLKACIISIRDIPKGEYISYGNEYFCNKDTTVA 229

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSI 328
           +  IGYADG      G +  H   +       I     PIL  I MD    DI+     +
Sbjct: 230 ILNIGYADGL-----GCEIHHDSYL------LINATKCPILS-INMDYLYVDISAIKHQL 277

Query: 329 EVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RYAKF 368
           ++ D I++FGP+ + L+  A     T  + L ++   R  K 
Sbjct: 278 KMLDMIELFGPNSLSLEQHANMYNITKDEALTKLNALRVRKI 319


>gi|242309198|ref|ZP_04808353.1| alanine racemase [Helicobacter pullorum MIT 98-5489]
 gi|239524239|gb|EEQ64105.1| alanine racemase [Helicobacter pullorum MIT 98-5489]
          Length = 359

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 149/387 (38%), Gaps = 63/387 (16%)

Query: 9   LKIDLTALKNNWHSMNALSG---NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L+I+     +N   + ++ G     + A V+KDNAYG G  ++A     AG+   FV + 
Sbjct: 4   LQINPHYFIDNLQVIKSIIGEDEGHKIAIVLKDNAYGHGLVELAKISSEAGITSCFVKNT 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKI----IFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           +E +++        I +LY      E +    I   N+   ++++  L  Y         
Sbjct: 64  QEAIEV--AKWFEHISILYPQSLESETLLKSCIQRENIYFCVANIESLDLY------PPK 115

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ--- 178
               L++++G NR G+ + +  +    S   KL ++  + SH    D+  S   +     
Sbjct: 116 SKIELKINSGMNRNGIQINKLQEALKKSLENKL-EIVGVFSHNGFGDNIGSEFYAQNDSN 174

Query: 179 ------LERFRTLISHYKGIEASLASSSGILLGPNYHF--------QLTRPGISLYGG-- 222
                 + +F    +  K       SSSG L    Y+          L R GI+LYG   
Sbjct: 175 LHIKREVLQFCKA-NSLKKPRFHFLSSSGALRAAKYNVSLPIELQDDLYRIGIALYGYLC 233

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
            D +     ++ + +  A+ I  +    G  + YGG  K+  D L++   IGY DG    
Sbjct: 234 QDSMLYEVQLKPIASLWAKKISTQLLKKGSRIGYGGISKVDEDMLVSTYDIGYGDGLFRV 293

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD--YIQIFGPD 340
             G++      +              I  + +MD              GD   + IF  D
Sbjct: 294 REGMELFTKEGL-------------KIFPRASMDCISI---------QGDCEEVCIF-DD 330

Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAK 367
           ++    A A GT  Y++L  + +   K
Sbjct: 331 VRP--WAEAFGTIPYEILSHLHSYIPK 355


>gi|254372286|ref|ZP_04987777.1| hypothetical protein FTCG_01352 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254373765|ref|ZP_04989248.1| hypothetical protein FTDG_01549 [Francisella novicida GA99-3548]
 gi|151570015|gb|EDN35669.1| hypothetical protein FTCG_01352 [Francisella novicida GA99-3549]
 gi|151571486|gb|EDN37140.1| hypothetical protein FTDG_01549 [Francisella novicida GA99-3548]
          Length = 321

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 29/339 (8%)

Query: 33  AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
             +VK NAYG+G E I     +  V  + +  +EE   L+       I  L GI+     
Sbjct: 1   MFIVKANAYGIGIENIYKVTNDL-VDAYGIARIEEYYVLKSLGCTKDIVFLSGIYAECFD 59

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
                N+IP++ +   +  Y K      S    L  D G  R G    + +       + 
Sbjct: 60  FKIPKNVIPILGNELLIKDYIKYEDD-KSKQVMLDFDCGMGRFGFYRDDFIKHLDTIKSS 118

Query: 153 KLGQLSLIISHLA---CADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
               + ++ SH+       D S       L     L++    ++ + ++S   L   ++ 
Sbjct: 119 GFSNI-ILFSHIPTGYNGYDRSKRYIDKIL-----LLAEETKLKYTFSNSPVSLFDTDFQ 172

Query: 210 FQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
            +  R   ++ G   +  +   ++  ++ +A II IR    GE +SYG +    +D+ +A
Sbjct: 173 QEYIRSSSAVLGYDQEPKE---IKFSLSLKACIISIRDIPKGEYISYGNEYFCNKDTTVA 229

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSI 328
           +  IGYADG      G +  H   +       I     PIL  I MD    DI+     +
Sbjct: 230 ILNIGYADGL-----GCEIHHDSYL------LINATKCPILS-INMDYLYVDISAIKHQL 277

Query: 329 EVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RY 365
           ++ D I++FGP+ + L+  A     T  + L ++   R 
Sbjct: 278 KMLDMIELFGPNSLSLEQHASMYNITKDEALTKLNALRV 316


>gi|254458882|ref|ZP_05072306.1| alanine racemase [Campylobacterales bacterium GD 1]
 gi|207084648|gb|EDZ61936.1| alanine racemase [Campylobacterales bacterium GD 1]
          Length = 333

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/347 (23%), Positives = 139/347 (40%), Gaps = 53/347 (15%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG- 89
           + A V+KDNAYG G  ++A      GV+   V S +E   +  +     I VL  I    
Sbjct: 27  KIAIVLKDNAYGHGISEMASLAKEYGVKKAVVRSNDEAKSIEEFFEY--ILVLGDIPKEP 84

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS 149
             K+ +  N I  IS  P+ T               L+VDTG +R G+S+ E  D     
Sbjct: 85  SSKMRYTINDIKSISKFPKETL------------VELKVDTGMHRNGISMSELHDAFMQI 132

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH---------YKGIEASLASSS 200
               L  L  + +H   +D+ +S     Q + F+ +            +  +    A+S+
Sbjct: 133 KEAGLI-LEAVFTHHRSSDELTSEWF-WQNDNFKKVKQEAAYLAEEFGFGSLRFHSANSA 190

Query: 201 GILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
            +    ++   + R GI+ YG    +        V++  A  I  R+   G+ V YGG  
Sbjct: 191 SLFRTDSFDEDMARVGIASYGC---LEGYEGFAPVLSLYADKISSREVKRGQRVGYGGTF 247

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
               + +++    GY DG+    S                F+    V  +G+I+MD + F
Sbjct: 248 VAKDNCVVSNYDFGYGDGFLRNSSNE--------------FVTSNGVEQVGRISMDNSSF 293

Query: 321 DITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
            IT+  ++       IF   I   D A ++GT +Y++L  +     +
Sbjct: 294 -ITNEENL------LIFNNAI---DAAKSAGTISYEILTSLKASLKR 330


>gi|110803655|ref|YP_698455.1| alanine racemase [Clostridium perfringens SM101]
 gi|110684156|gb|ABG87526.1| putative alanine racemase [Clostridium perfringens SM101]
          Length = 350

 Score =  182 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 129/341 (37%), Gaps = 26/341 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + +    ++L  ++NN + +  L  N +  AV+K +AYGLG +KIA  + +  V    V 
Sbjct: 2   SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKKIAEFIEDK-VDIIAVG 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           ++ E + L        I +L  +    +      NLI  + +   L    K         
Sbjct: 61  NIYESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKE----TKKR 114

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG NR+G+   +   F     N+    ++  I +HL  A   +      Q+E F
Sbjct: 115 VHIYVDTGMNRMGIKPNKLDSFIERVKNEFPNLEIDGIYTHLHNAKYVN--YTLKQIELF 172

Query: 183 RTLISHYKG--IEASLASSSGILLGPNYHFQ----LTRPGISLYGGTDKINKSHPMQTVV 236
           ++ +  Y+         +SS I+              R G  LYG    I  +  ++   
Sbjct: 173 KSTVEKYRDKVRIIHCMASSAIINDQLRKACDFTTGARAGNVLYGY---IGFNKGIKKTY 229

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG--YADGYPLTLSG---LDSEHS 291
              A+ +   K   G+ V YG   K  +D  I +   G  +  G    +      D    
Sbjct: 230 EYYAKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRM 289

Query: 292 PSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEV 330
                  +  I      V ILGK+ M++T+  + +     V
Sbjct: 290 IYRRFKERSVIFNNNVPVKILGKVNMNITIISMENCSKDSV 330


>gi|169342418|ref|ZP_02863482.1| alanine racemase family protein [Clostridium perfringens C str.
           JGS1495]
 gi|169299538|gb|EDS81602.1| alanine racemase family protein [Clostridium perfringens C str.
           JGS1495]
          Length = 350

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 130/341 (38%), Gaps = 26/341 (7%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + +    ++L  ++NN + +  L  N +  AV+K  AYGLG ++IA  + +  V    V 
Sbjct: 2   SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGEAYGLGSKEIAEFIEDK-VDIIAVG 60

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
           +++E + L        I +L  +    +      NLI  + +   L    K         
Sbjct: 61  NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNELDKE----TKKR 114

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERF 182
             + VDTG NR+G+   +   F     N+    ++  I +HL  A D +      Q+E F
Sbjct: 115 VHIYVDTGMNRMGIKSNKLDSFIERVKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172

Query: 183 RTLISHYKG--IEASLASSSGI----LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           ++ +  YK         +SS I    L          R G  LYG    I  +  ++   
Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGY---IGFNKGIKKTY 229

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG--YADGYPLTLSG---LDSEHS 291
              A+ +   K   G+ V YG   K  +D  I +   G  +  G    +      D    
Sbjct: 230 EYYAKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRM 289

Query: 292 PSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIEV 330
                  +  I      V ILGK+ M++T+  + +     V
Sbjct: 290 IYRRFKERSVIFNNNVPVKILGKVNMNITIISMENCSKDSV 330


>gi|218677912|ref|ZP_03525809.1| putative alanine racemase [Rhizobium etli CIAT 894]
          Length = 165

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/160 (50%), Positives = 110/160 (68%)

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
           D+PS  +N  QLE FR + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG     
Sbjct: 1   DEPSHAMNRRQLESFRRVSAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCG 60

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            ++PM+ V TA+ARII +R   AGE VSYG   +L RDS +A+ ++GYADGY  + S   
Sbjct: 61  MANPMRPVATAQARIIQVRNVEAGETVSYGRALQLRRDSRLAIVSVGYADGYMRSQSSGG 120

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327
                 V  GG+GFI G+ VP+ G+ITMD+T+FD+TD   
Sbjct: 121 VPLRQVVPQGGEGFIAGHKVPVAGRITMDLTIFDVTDLPE 160


>gi|32267015|ref|NP_861047.1| alanine racemase [Helicobacter hepaticus ATCC 51449]
 gi|32263067|gb|AAP78113.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 344

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 147/377 (38%), Gaps = 57/377 (15%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           + ID  + K+N + +++  G     A V+KDNAYG G E+I+      G++  FV +  E
Sbjct: 4   IIIDSQSYKHNLNLISSHIGTSTELAIVLKDNAYGHGLEQISTLAREYGIKSVFVKNYAE 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
            ++++   P   I  LYG+  G        ++  VI+    ++               L+
Sbjct: 64  AMQIKDDFP--CITALYGMPQGTFPP----HIAFVINHKEHISIL------PKGTNVELK 111

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           V+ G NR G+   E  +F     ++ L  L  + SH    DD        Q ERF  +  
Sbjct: 112 VNAGMNRNGIQASEISEFVELILHRGL-NLIGVFSHNGYGDDIDEEFERTQ-ERFALIKQ 169

Query: 188 HYKGIE----------ASLASSSGI--LLGPNYHFQLTRPGISLYGGTDKINK---SHPM 232
             K +            SL+SS  I   +  N +  L R GI+ YG  D   +   S  +
Sbjct: 170 EIKELAQKYGFPLPRFHSLSSSGAIREAMNNNINDDLVRIGIAAYGYLDVAFENPISAKL 229

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + V    A  I  R       + Y G  K+   ++++   IGY DG+      +   H  
Sbjct: 230 RKVAALYADRISTRVLPQNARIGYSGCTKMDSKNIVSTYDIGYGDGFFR----VSERHKV 285

Query: 293 SVFLGGKGFIKGYMVPILGKITMD--MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
               G           IL +++MD    M D +          I +F      + +A A 
Sbjct: 286 YTAKG---------YQILPRLSMDCFSCMCDES---------RICVFDD---ANTIAQAF 324

Query: 351 GTTNYDLLVRIGTRYAK 367
           GT  Y++L  +     +
Sbjct: 325 GTITYEILTHLSPFIKR 341


>gi|291277443|ref|YP_003517215.1| alanine racemase [Helicobacter mustelae 12198]
 gi|290964637|emb|CBG40491.1| alanine racemase [Helicobacter mustelae 12198]
          Length = 342

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 139/376 (36%), Gaps = 49/376 (13%)

Query: 6   FLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             ++ ID    KNN   + + L    + A V+KDNAYG G E++A   +N G++  FV +
Sbjct: 1   MAQILIDSQKYKNNLDLITSHLHDKTKLAIVLKDNAYGHGLEEMAHLSHNYGIKSVFVKN 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
             E  K+  +  +  I + YGI           NL PVI S   L   +           
Sbjct: 61  ESEARKI-EHLFEH-ITIFYGIPSSPLPP----NLHPVIHSNQNLDLLA------SPCSV 108

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L+++ G NR G++ +E          K LG L  + +H    DD      + Q + F+ 
Sbjct: 109 ELKINIGMNRNGIAPRELESMITKILQKDLG-LFGVFAHNGYGDDLMEDFQNGQ-QIFQE 166

Query: 185 LISH---------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPM 232
           +            +        +SSG L    +   L R G++ YG       +  +  +
Sbjct: 167 IKEQTLYLSQKLGFPRPRFHSLNSSGTLRSREFPDDLVRIGMAAYGYCGANFPLEIADRL 226

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q + +  A  I       G  + Y G   L  DS ++   IGY DG            S 
Sbjct: 227 QPIASLWADKICTHYLPKGAKIGYSGMSVLQEDSFVSTYDIGYGDGLFRFDGTQPPYFSA 286

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352
             FL            IL K +MD     ++    I V D             +A    T
Sbjct: 287 DGFL------------ILPKTSMD-CFSALSTKERICVFD---------DARTLAQIFHT 324

Query: 353 TNYDLLVRIGTRYAKF 368
             Y++LVRI     + 
Sbjct: 325 IPYEILVRISPFIQRI 340


>gi|294783099|ref|ZP_06748423.1| alanine racemase [Fusobacterium sp. 1_1_41FAA]
 gi|294479977|gb|EFG27754.1| alanine racemase [Fusobacterium sp. 1_1_41FAA]
          Length = 358

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 143/380 (37%), Gaps = 38/380 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ F+ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFFVSL--DKKALYHNIEYLREYK-QKELLPVIKANAYGHDILLIAKALYDYDIKVW 57

Query: 61  FVTSVEEGVKLRLYTPQA-----RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
            V    E V +  Y         +I +   +      +     + P ++S+      + L
Sbjct: 58  AVARYSEAVSICEYFKTLSIDDFKILIFESLIDDYSLLEKYPQICPTLNSI--KDLKNAL 115

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
            +       +L++D GF R G+  +E  D   N       +   I SHL  A        
Sbjct: 116 ANNISIDRLSLKIDFGFGRNGIKYEEV-DELKNLIKYNSLKFLSIFSHLFSASYTDG--- 171

Query: 176 SVQLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232
              +++F  L++           L +++GI           R G+  YG  +       M
Sbjct: 172 LEVIKKFTDLVNKLGRNNFEMIHLQNAAGIYNYDVDIVTHIRTGMLTYGLQEAGFYDLDM 231

Query: 233 QTVVT-AEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEH 290
           + V T     +  +R     + V+Y     +   +  IA   IGY DG+           
Sbjct: 232 KPVFTGLIGYVDSVRYVNELDYVAYQELSSIDLGTKKIAKIKIGYGDGFSKA-------- 283

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                      IK     ++ ++TMD T  ++ D   + VGD + ++    + +++   +
Sbjct: 284 ----NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDEVHLY---HRPNEIKTKT 333

Query: 351 GTTNYDLLVRIGT-RYAKFY 369
           G +  +LL+ I   R  + +
Sbjct: 334 GFSMLELLIAISPLRVKRIF 353


>gi|313902556|ref|ZP_07835956.1| alanine racemase [Thermaerobacter subterraneus DSM 13965]
 gi|313467122|gb|EFR62636.1| alanine racemase [Thermaerobacter subterraneus DSM 13965]
          Length = 511

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 123/367 (33%), Gaps = 32/367 (8%)

Query: 6   FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             R+++DL  L  N  ++   L    R  AVVK + YG+G E  A     AG       +
Sbjct: 50  RARIEVDLDVLAANLAAVRRFLRPGTRLLAVVKGDGYGVGAEMAARTFAAAGADALGTAT 109

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK---LMSCGVS 121
           +E  ++LR     A I V     P          L   +     L   S+    +  G  
Sbjct: 110 LESALRLRRSGITAPILVFQPPEPPLLDFWLREGLQATVHDAATLHALSQRAVALGVGRP 169

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               L+VD G  R GL+  +       + +    ++  + +HL  A  P   +  +    
Sbjct: 170 LAVHLEVDMGLGRGGLAPGQVAPLVAGAASLPGVRIEGLYTHLPTAARPRLALRLLDRFL 229

Query: 182 FRTLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVV 236
                   +G+       A S  ++L P     + R G  LYG   +  +     ++   
Sbjct: 230 RLVRDLEERGLRPPLVHCAESHLLVLAPYAQLDMVRVGNLLYGYAPRAARRAGLAVRPPS 289

Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL--------------- 281
               R+  + +  AG++            + +AV  +G ADG                  
Sbjct: 290 RLVVRVWAVHR--AGDMTPGYRGGWARPGTPVAVLPVGLADGLRPAREARHWGDRMVILG 347

Query: 282 -----TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
                 L       + +   G +       VP+ G+  M+  +FD T    +  G  +++
Sbjct: 348 RRLLGALGARQVLGASTAPPGPRVRAGHREVPLRGEFMMNHCLFDATGLP-LAPGQEVEL 406

Query: 337 FGPDIKL 343
               +  
Sbjct: 407 LVSRLTA 413


>gi|213026955|ref|ZP_03341402.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 174

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 13/187 (6%)

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
           P   +N  Q    +     +     SLA+S G+ L P +   L RPG++L+G   +   S
Sbjct: 1   PDHALNVYQHTLLQQAKKAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFS 59

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
            P++   T    I+ ++    G  + YG     TR   IA  + GYADG P  L      
Sbjct: 60  TPLKPAFTLTLTILRVQDVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNLRPPAG- 118

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                        +G  +P+LG++ MD  M D +  +    GD ++  G    L++VA A
Sbjct: 119 ----------VCWRGVRLPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAA 167

Query: 350 SGTTNYD 356
             T  Y+
Sbjct: 168 CDTIPYE 174


>gi|302543291|ref|ZP_07295633.1| alanine racemase [Streptomyces hygroscopicus ATCC 53653]
 gi|302460909|gb|EFL24002.1| alanine racemase [Streptomyces himastatinicus ATCC 53653]
          Length = 252

 Score =  176 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 90/221 (40%), Gaps = 12/221 (5%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R  +DLTAL++N  ++ A +  A   AVVK + YG G    A A   AG       + 
Sbjct: 10  RARAVVDLTALRDNVRALRAAAPTAELMAVVKSDGYGHGAIPCARAARAAGAGWLGTATP 69

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124
           EE + LR    Q R+        G  +   + ++    S V       +   +CG +   
Sbjct: 70  EEALALRAAGDQGRLMCWLWTPGGPWRQAIEADIDVSASGVWALREAVAAARACGRTARV 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLER 181
            L+ DTG  R G    +  +    +   +     +++ + SH ACAD+P     + QL  
Sbjct: 130 QLKADTGLGRNGCPPADWPELVAEALAAEAEGTVKVTGLWSHFACADEPGHPSIAAQLTV 189

Query: 182 FRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGI 217
           FR L+   +  G+      LA+S   L     H    RPG 
Sbjct: 190 FRELLDQAERAGLRPEVRHLANSPATL---TIHRVALRPGT 227


>gi|262066393|ref|ZP_06026005.1| alanine racemase [Fusobacterium periodonticum ATCC 33693]
 gi|291379960|gb|EFE87478.1| alanine racemase [Fusobacterium periodonticum ATCC 33693]
          Length = 358

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 146/381 (38%), Gaps = 40/381 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ F+ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFFVSL--DKKALYHNIEYLREYK-QKELLPVLKANAYGHNILLIAKALYDYDIKVW 57

Query: 61  FVTSVEEGVKLRLYTPQA-----RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
            V    E V +  Y         +I +   +      +   + + P ++S+         
Sbjct: 58  AVARYSEAVSICEYFKTLSIDDFKILIFESLIDDYSVLEKYSQICPTLNSI---KDLKNA 114

Query: 116 MSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           ++  VS    +L++D GF R G+  +E +D   N       +   I SHL  A       
Sbjct: 115 LANNVSIDRLSLKIDFGFGRNGIKYEE-IDELKNLIKYNSLKFLSIFSHLFSASYTDG-- 171

Query: 175 NSVQLERFRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               +++F  L++           L +++GI           R G+  YG  +       
Sbjct: 172 -LEVIKKFTDLVNKLGKNNFEMIHLQNAAGIYNYDVEIVTHIRTGMLTYGLQEAGFYDLD 230

Query: 232 MQTVVT-AEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSE 289
           ++ V T     +  +R     + V+Y     +   +  IA   IGY DG+          
Sbjct: 231 LKPVFTGLIGYVDSVRYVNELDYVAYQELSSIDPGTKKIAKIKIGYGDGFSKA------- 283

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       IK     ++ ++TMD T  ++ D   + VGD + ++    + +++   
Sbjct: 284 -----NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDEVHLY---HRPNEIKTK 332

Query: 350 SGTTNYDLLVRIGT-RYAKFY 369
           +G +  +LL+ I   R  + +
Sbjct: 333 TGFSMLELLIAISPLRVKRIF 353


>gi|257452771|ref|ZP_05618070.1| alanine racemase [Fusobacterium sp. 3_1_5R]
          Length = 360

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 139/384 (36%), Gaps = 44/384 (11%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  + F  L+++  A+ +N + +           V+K NAYG G  ++A     AGV   
Sbjct: 1   MVEHSFY-LEVNREAILHNINVLRKWK-RKDIIPVIKANAYGHGMLEMAKTCVQAGVTQV 58

Query: 61  FVTSVEEGVK-LRLYTPQA-------RIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTF 111
            V   EE  K L     Q+       +I +   I  G   ++ D   +   I+S+ +L  
Sbjct: 59  AVARYEEAKKILEDSYFQSLSKECSFQILIFESI--GDFSLLDDFPRMDISINSLEELE- 115

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
              L          +++D  F R G+  ++   F      + L     I SHL  +    
Sbjct: 116 -KALEYHISPKKMQVKIDFSFGRNGIQEKDLPFFIKKVKEENL-TFKGIFSHLFSSSYED 173

Query: 172 SHVNSVQLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
                + +++F +L+      +     L +S+             R G+  YG  +    
Sbjct: 174 G---LLCIKKFSSLVQEMGKERFDRIHLQNSAASYNYDCDIVTDIRVGMLTYGLQEPGYF 230

Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSGL 286
              +Q     + +I  IR     + ++Y G+    +      A   IGYADG+       
Sbjct: 231 HEELQRAFCLKGKIDSIRCVENMKYLAYEGKEDVGMKFAKWAAKIKIGYADGF------- 283

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDD 345
                      G   I+     I  ++TMD T  ++ +   ++VGD + +F  P     +
Sbjct: 284 -----GKENENGSCIIQRKEYRIA-EVTMDNTFLEVDE--RVKVGDEVLLFYNPTKTKQE 335

Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369
                    ++ L  +  R  + +
Sbjct: 336 TGKEI----HEHLTGLTNRLPRKW 355


>gi|325846728|ref|ZP_08169643.1| putative alanine racemase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481486|gb|EGC84527.1| putative alanine racemase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 177

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 20/179 (11%)

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TVVTAEARIILIRKALA 250
            +++++  +   N+   L R GI +YG           +         +A+I  I+    
Sbjct: 2   HISNTAASMEY-NFKSDLLRLGIGIYGIYPSDYIREISKIKLCQAFEFKAQISFIKDVRK 60

Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           G  +SYG      +D  +A  ++GYADG+  + S             G+  + G +  ++
Sbjct: 61  GTSISYGRTYIAPKDIKVATVSVGYADGFKRSFSNT-----------GEVLVNGKIAKVV 109

Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           G++ MD  M D++     ++GDYI ++ PDI  +  A    T  Y+L+  I  R  + Y
Sbjct: 110 GRVCMDQIMVDVSGI-DCKIGDYITLY-PDIYKE--ANKIHTIAYELMTSISNRVPRIY 164


>gi|257466861|ref|ZP_05631172.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 360

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 140/385 (36%), Gaps = 46/385 (11%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  + F  L+++  A+ +N + +           V+K NAYG G  ++A     AGV   
Sbjct: 1   MVEHSFY-LEVNREAILHNINVLRKWK-RKDIIPVIKANAYGHGMLEMAKTCVQAGVTQV 58

Query: 61  FVTSVEEGVK-LRLYTPQA-------RIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTF 111
            V   EE  K L     Q+       +I +   I  G   ++     +   I+S+ +L  
Sbjct: 59  AVARYEEAKKILEDSYFQSLSKECSFQILIFESI--GDFSLLDHFPRMDISINSLEELE- 115

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH-LACADDP 170
              L          +++D  F R G+  ++   F      + L     I SH  +C+ + 
Sbjct: 116 -KALEYHISPKKMQVKIDFSFGRNGIQEKDLPFFIKKVKEENL-TFKGIFSHLFSCSYED 173

Query: 171 SSHVNSVQLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                 + +++F +L+      +     L +S+             R G+  YG  +   
Sbjct: 174 G----LLCIKKFSSLVQEMGKERFDRIHLQNSAASYNYDCDIVTDIRVGMLTYGLQEPGY 229

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSG 285
               +Q     + +I  IR     + ++Y G+    +      A   IGYADG+      
Sbjct: 230 FHEELQRAFCLKGKIDSIRCLENMKYLAYEGKEDVGMKSAKWAAKIKIGYADGF------ 283

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLD 344
                       G   I+     I  ++TMD T  ++ +   ++VGD + +F  P     
Sbjct: 284 ------GKENENGSCIIQRKEYRIA-EVTMDNTFLEVDE--RVKVGDEVLLFYNPTKTKQ 334

Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369
           +         ++ L  +  R  + +
Sbjct: 335 ETGKEI----HEHLTGLTNRLPRKW 355


>gi|317059312|ref|ZP_07923797.1| alanine racemase [Fusobacterium sp. 3_1_5R]
 gi|313684988|gb|EFS21823.1| alanine racemase [Fusobacterium sp. 3_1_5R]
          Length = 359

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 136/376 (36%), Gaps = 43/376 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+++  A+ +N + +           V+K NAYG G  ++A     AGV    V   EE 
Sbjct: 7   LEVNREAILHNINVLRKWK-RKDIIPVIKANAYGHGMLEMAKTCVQAGVTQVAVARYEEA 65

Query: 69  VK-LRLYTPQA-------RIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCG 119
            K L     Q+       +I +   I  G   ++ D   +   I+S+ +L     L    
Sbjct: 66  KKILEDSYFQSLSKECSFQILIFESI--GDFSLLDDFPRMDISINSLEELE--KALEYHI 121

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                 +++D  F R G+  ++   F      + L     I SHL  +         + +
Sbjct: 122 SPKKMQVKIDFSFGRNGIQEKDLPFFIKKVKEENL-TFKGIFSHLFSSSYEDG---LLCI 177

Query: 180 ERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236
           ++F +L+      +     L +S+             R G+  YG  +       +Q   
Sbjct: 178 KKFSSLVQEMGKERFDRIHLQNSAASYNYDCDIVTDIRVGMLTYGLQEPGYFHEELQRAF 237

Query: 237 TAEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
             + +I  IR     + ++Y G+    +      A   IGYADG+               
Sbjct: 238 CLKGKIDSIRCVENMKYLAYEGKEDVGMKFAKWAAKIKIGYADGF------------GKE 285

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALASGTT 353
              G   I+     I  ++TMD T  ++ +   ++VGD + +F  P     +        
Sbjct: 286 NENGSCIIQRKEYRIA-EVTMDNTFLEVDE--RVKVGDEVLLFYNPTKTKQETGKEI--- 339

Query: 354 NYDLLVRIGTRYAKFY 369
            ++ L  +  R  + +
Sbjct: 340 -HEHLTGLTNRLPRKW 354


>gi|315918009|ref|ZP_07914249.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691884|gb|EFS28719.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 359

 Score =  172 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 137/377 (36%), Gaps = 45/377 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L+++  A+ +N + +           V+K NAYG G  ++A     AGV    V   EE 
Sbjct: 7   LEVNREAILHNINVLRKWK-RKDIIPVIKANAYGHGMLEMAKTCVQAGVTQVAVARYEEA 65

Query: 69  VK-LRLYTPQA-------RIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCG 119
            K L     Q+       +I +   I  G   ++     +   I+S+ +L     L    
Sbjct: 66  KKILEDSYFQSLSKECSFQILIFESI--GDFSLLDHFPRMDISINSLEELE--KALEYHI 121

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH-LACADDPSSHVNSVQ 178
                 +++D  F R G+  ++   F      + L     I SH  +C+ +       + 
Sbjct: 122 SPKKMQVKIDFSFGRNGIQEKDLPFFIKKVKEENL-TFKGIFSHLFSCSYEDG----LLC 176

Query: 179 LERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
           +++F +L+      +     L +S+             R G+  YG  +       +Q  
Sbjct: 177 IKKFSSLVQEMGKERFDRIHLQNSAASYNYDCDIVTDIRVGMLTYGLQEPGYFHEELQRA 236

Query: 236 VTAEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
              + +I  IR     + ++Y G+    +      A   IGYADG+              
Sbjct: 237 FCLKGKIDSIRCLENMKYLAYEGKEDVGMKSAKWAAKIKIGYADGF------------GK 284

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALASGT 352
               G   I+     I  ++TMD T  ++ +   ++VGD + +F  P     +       
Sbjct: 285 ENENGSCIIQRKEYRIA-EVTMDNTFLEVDE--RVKVGDEVLLFYNPTKTKQETGKEI-- 339

Query: 353 TNYDLLVRIGTRYAKFY 369
             ++ L  +  R  + +
Sbjct: 340 --HEHLTGLTNRLPRKW 354


>gi|303242258|ref|ZP_07328745.1| Alanine racemase [Acetivibrio cellulolyticus CD2]
 gi|302590168|gb|EFL59929.1| Alanine racemase [Acetivibrio cellulolyticus CD2]
          Length = 132

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 16/129 (12%)

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           +       +SYG   K  R+S IA   IGYADGY   L+             G+  + G 
Sbjct: 1   KDVETDTCISYGRIFKTQRESRIATLPIGYADGYTRLLTN-----------KGRVLVNGQ 49

Query: 306 MVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVR 360
            VPI+GKI MD  M D+TD    + VGD + +FG     +I ++D+A   GT NY++   
Sbjct: 50  SVPIVGKICMDQCMIDVTDVQGEVNVGDEVVLFGSQNGSEISIEDLASKIGTINYEIACI 109

Query: 361 IGTRYAKFY 369
           IG R  + Y
Sbjct: 110 IGKRIPRVY 118


>gi|294853874|ref|ZP_06794546.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
 gi|294819529|gb|EFG36529.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
          Length = 152

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 13/139 (9%)

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V+T  AR+I +R    G  V YGG         IA  A+GYADG   +LS         
Sbjct: 14  PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 65

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351
               G  F     +PI+G+++MD    D+T      +++G  +++ GP  +L+DVA    
Sbjct: 66  ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 122

Query: 352 TTNYDLLVRIGTRYAKFYT 370
           T  Y++L  +G RYA+ Y 
Sbjct: 123 TIPYEILTALGNRYARVYV 141


>gi|224419174|ref|ZP_03657180.1| alanine racemase [Helicobacter canadensis MIT 98-5491]
 gi|253828107|ref|ZP_04870992.1| alanine racemase [Helicobacter canadensis MIT 98-5491]
 gi|313142680|ref|ZP_07804873.1| alanine racemase [Helicobacter canadensis MIT 98-5491]
 gi|253511513|gb|EES90172.1| alanine racemase [Helicobacter canadensis MIT 98-5491]
 gi|313131711|gb|EFR49328.1| alanine racemase [Helicobacter canadensis MIT 98-5491]
          Length = 358

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 142/386 (36%), Gaps = 61/386 (15%)

Query: 9   LKIDLTALKNNWHSMNALSGNA---RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L+I+     +N+H +    G     + A V+KDNAYG G +++A     A +   FV + 
Sbjct: 4   LQINSQHFFSNYHQIAQFIGQENIHKIAIVLKDNAYGHGLKEMAQLAKEAKITTCFVKNT 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKLMSCGV 120
           +E +++        I         ++K          N+   ++S+  L  Y        
Sbjct: 64  KEALEIAAMFRHITIL---YPQSLEDKEALQQCLKQDNIYFCVASLEALKLY------PK 114

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
                L++++G NR G+  Q+ L       NK+  +L  + SH    DD  S   +   E
Sbjct: 115 QTKIELEINSGMNRNGIQAQQ-LQEAFEIINKRELELIGVFSHNGFGDDFGSEFYTQNNE 173

Query: 181 ------RFRTLISH--YKGIEASLASSSGILLGPNY--------HFQLTRPGISLYGGTD 224
                 +   L +   +K       SSSG L    Y           L R GI+ YG   
Sbjct: 174 FLMVKKKVLELCNQYSFKKPRFHFFSSSGALRAVRYNESLPLELQDDLFRIGIAFYGYLC 233

Query: 225 KINKSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
           +  +     ++ + +  AR I       G  + YGG  +   D+L++   +GY DG    
Sbjct: 234 QDIRFCGLNVKPIASLWARKISTYFLKKGSRIGYGGVSETKEDTLVSSYDVGYGDGLFRL 293

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI-FGPDI 341
             G++ +                   I  + +MD              GD  ++    D 
Sbjct: 294 REGMELKTKEGF-------------KIYPRSSMDCLSI---------QGDREELCIIED- 330

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367
             +  A A GT  Y++LV +     K
Sbjct: 331 -ANPWAEAFGTIPYEILVHLQPTIPK 355


>gi|317064205|ref|ZP_07928690.1| alanine racemase [Fusobacterium ulcerans ATCC 49185]
 gi|313689881|gb|EFS26716.1| alanine racemase [Fusobacterium ulcerans ATCC 49185]
          Length = 353

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 150/377 (39%), Gaps = 37/377 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N  +++ I    L  N   +    +   +   V+K NAYG   E ++  LY+ G ++
Sbjct: 1   MAVNS-IKMLISEENLIQNIKYLEKKYAK--KILPVLKANAYGHSIEMVSEILYDNGYRE 57

Query: 60  FFVTSVEEGVKLRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           F V  + E  K+        +RI V   I      ++   N I +  S   L    + + 
Sbjct: 58  FAVARLNEAEKILQNKKVTDSRILVFESIGREFFDVVKSNNTIEI--SANTLAELKEFIE 115

Query: 118 CGVS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G+S     L++D GF R G+ +QE ++       KK      I SHL   +       +
Sbjct: 116 NGISPDRIQLKIDFGFGRNGI-IQEDIENLKKYIEKKNLSFKGIYSHLYAVEYDEG---A 171

Query: 177 VQLERFRTLISHYKGIE---ASLASSSGILLGPNYHFQLT-RPGISLYGGTDKINKSHPM 232
             +E+F   + +          + +S GILL  N       RPGI +YG  ++      +
Sbjct: 172 ELIEKFTETVKYLGKERFQMIHIQNSVGILLYGNCDMMTHLRPGIYIYGLQEEGFFQEGL 231

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDS--LIAVAAIGYADGYPLTLSGLDSEH 290
           + V   E +I  +R     + ++Y  +  L+ +     A   IGY +G+           
Sbjct: 232 KQVFKLEGKIAGVRDVSKSKYLAYNLKTTLSENDFNYAAKIKIGYGEGFSKA-------- 283

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                      I G    IL  +TMD T  ++ +  SI+ GD++ ++     +  V   +
Sbjct: 284 ----NEKSCCLINGKSYKIL-LVTMDNTFIEVDE--SIKEGDHVALYSD---VSKVREDT 333

Query: 351 GTTNYDLLVRIGTRYAK 367
           G    ++L  I +R  +
Sbjct: 334 GLHICEVLPVISSRIVR 350


>gi|257469979|ref|ZP_05634071.1| alanine racemase [Fusobacterium ulcerans ATCC 49185]
          Length = 357

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 150/377 (39%), Gaps = 37/377 (9%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           M  N  +++ I    L  N   +    +   +   V+K NAYG   E ++  LY+ G ++
Sbjct: 5   MAVNS-IKMLISEENLIQNIKYLEKKYAK--KILPVLKANAYGHSIEMVSEILYDNGYRE 61

Query: 60  FFVTSVEEGVKLRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           F V  + E  K+        +RI V   I      ++   N I +  S   L    + + 
Sbjct: 62  FAVARLNEAEKILQNKKVTDSRILVFESIGREFFDVVKSNNTIEI--SANTLAELKEFIE 119

Query: 118 CGVS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
            G+S     L++D GF R G+ +QE ++       KK      I SHL   +       +
Sbjct: 120 NGISPDRIQLKIDFGFGRNGI-IQEDIENLKKYIEKKNLSFKGIYSHLYAVEYDEG---A 175

Query: 177 VQLERFRTLISHYKGIE---ASLASSSGILLGPNYHFQLT-RPGISLYGGTDKINKSHPM 232
             +E+F   + +          + +S GILL  N       RPGI +YG  ++      +
Sbjct: 176 ELIEKFTETVKYLGKERFQMIHIQNSVGILLYGNCDMMTHLRPGIYIYGLQEEGFFQEGL 235

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDS--LIAVAAIGYADGYPLTLSGLDSEH 290
           + V   E +I  +R     + ++Y  +  L+ +     A   IGY +G+           
Sbjct: 236 KQVFKLEGKIAGVRDVSKSKYLAYNLKTTLSENDFNYAAKIKIGYGEGFSKA-------- 287

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350
                      I G    IL  +TMD T  ++ +  SI+ GD++ ++     +  V   +
Sbjct: 288 ----NEKSCCLINGKSYKIL-LVTMDNTFIEVDE--SIKEGDHVALYSD---VSKVREDT 337

Query: 351 GTTNYDLLVRIGTRYAK 367
           G    ++L  I +R  +
Sbjct: 338 GLHICEVLPVISSRIVR 354


>gi|226320650|ref|ZP_03796208.1| alanine racemase [Borrelia burgdorferi 29805]
 gi|226233866|gb|EEH32589.1| alanine racemase [Borrelia burgdorferi 29805]
          Length = 287

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 12/234 (5%)

Query: 23  MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82
           +    G     A +K +AYG G   I   L +  +  F ++++E+   L+      +I +
Sbjct: 27  IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141
              +   + K +    L+P +S    L    K  +         L++D G NR G+ + +
Sbjct: 87  YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SL 196
           AL+      N K  +L  I SHL   ++  +     Q+E+F   +     K I      +
Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENFKT--TQKQIEQFLFFLETLKQKNIHPKFVHI 204

Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIR 246
           ++S  I+    N  F + RPG+ LYG    +    P    + V++  +++I I+
Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIK 258


>gi|78776580|ref|YP_392895.1| alanine racemase [Sulfurimonas denitrificans DSM 1251]
 gi|78497120|gb|ABB43660.1| Alanine racemase [Sulfurimonas denitrificans DSM 1251]
          Length = 338

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 132/352 (37%), Gaps = 58/352 (16%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90
           + A V+KDNAYG G  +++      G++   V +  E  ++        I VL       
Sbjct: 27  KIALVLKDNAYGHGLVEMSSMAKEYGIKRAVVRTHREA-EIAESFFSY-ILVLG-----D 79

Query: 91  EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150
              +    +   I+ +  +  +             L++D+G +R G+++ E  +      
Sbjct: 80  IPTMVSKTIRYTINDLESIDKF------PKETRVELKIDSGMHRNGIAIDEIEEAFIKIK 133

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS---------HYKGIEASLASSSG 201
            + L  L  + +H   AD+ +S     Q + F               +  +    ++S+ 
Sbjct: 134 ARGLL-LEGLFTHHRSADELTSEWF-WQKKNFEDAKRIAKELAIKYGFAPLRFHSSNSAA 191

Query: 202 ILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
           +    ++   + R GI+ YG     K       + V++  A+ +  RK  + + V YGG 
Sbjct: 192 LFRNASFDEDMARVGIAAYGCMTLPKPLHVDGFKPVLSLWAKKLSSRKLKSHQRVGYGGD 251

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP----ILGKITM 315
            ++  D +++    GY +G+                        GY  P    ++G+I+M
Sbjct: 252 GEILSDGVVSNYDFGYGEGFLR------------------VCANGYKTPEGIELIGRISM 293

Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           D + F  +        D + IF        VA  + T +Y++L  +     +
Sbjct: 294 DNSSFLSSK-------DKLLIFD---SALHVATYASTISYEVLTSLKPEIKR 335


>gi|237753177|ref|ZP_04583657.1| alanine racemase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375444|gb|EEO25535.1| alanine racemase [Helicobacter winghamensis ATCC BAA-430]
          Length = 360

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 141/387 (36%), Gaps = 59/387 (15%)

Query: 9   LKIDLTALKNNWHSM-NALSGNAR------TAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           L+I      +N   +  A++   +       A V+KDNAYG G  +IA      G++  F
Sbjct: 4   LEISKKNFFHNHQMIAQAITPKEKKGIKGEIAIVLKDNAYGHGIMEIASLAKEVGIKTAF 63

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           V +++E + ++ +     I     + P +  +     +  +    P L    +  S    
Sbjct: 64  VKNLQEALSIKTFFDNIAILYPNSL-PNKNALESALKIPSISFCTPSLESLQEYPS---K 119

Query: 122 HPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
               L+VD+G +R G+    L++A +        +   L  + +H    DD +S      
Sbjct: 120 TNIELKVDSGMHRNGIDKTKLRDAFELITT----RNLNLKGVFTHNGYGDDLNSAFYVQD 175

Query: 179 LERFRTLISHYKGIEASLA---------SSSGILLGPNY--------HFQLTRPGISLYG 221
           +E F  +      +              SSSG L   N+           L R GI+ YG
Sbjct: 176 ME-FLEIKKEALKLCEHFKIPRPKFHSLSSSGALRASNFNASLPKELQDDLFRIGIAFYG 234

Query: 222 GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281
                  +  ++ + +  A  I   K   G  + Y G   L  D +++   IGY DG   
Sbjct: 235 YNCSSPNTLKLKPIASLFANKISTLKLKKGTSIGYSGVSMLETDGIVSTYDIGYGDGLFR 294

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341
              G++   +                 IL + +MD    + +D+        + IF    
Sbjct: 295 VREGMELYTTEG-------------YRILPRASMDCISIE-SDT------SSVCIFND-- 332

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKF 368
            +   A +  T  Y++LV +     +F
Sbjct: 333 -VSAFAKSFNTIPYEILVHLHAYIPRF 358


>gi|332654849|ref|ZP_08420591.1| putative alanine racemase [Ruminococcaceae bacterium D16]
 gi|332516192|gb|EGJ45800.1| putative alanine racemase [Ruminococcaceae bacterium D16]
          Length = 355

 Score =  166 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 128/351 (36%), Gaps = 39/351 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAY------------GLGCEKIAPALYNA 55
           RL I+ +A++NN   +   +  A          Y                 ++A  L +A
Sbjct: 3   RLIIERSAIRNNMAVIKERAQGAAL--------YGVVSGQGGGVGA----VRLARLLRDA 50

Query: 56  GVQDFFVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYS 113
           GV  F V SVEE   LR        I +L      +E   + D +++  +SSV      +
Sbjct: 51  GVTRFGVNSVEEAQLLRESGFETEEILMLRSTVDREELEQLVDLSVVCTVSSVDTGLALN 110

Query: 114 KLMS-CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            +           +QVDTG    G  + E         +     LS I + L      S 
Sbjct: 111 AVAENRSTVAEAHIQVDTGLGFGGFLISEPEKILLAYRSLPNVALSGIYTQLHAVTGKSQ 170

Query: 173 HVNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
            V   QL++F+ ++     + ++      A S  ++   +      R G ++ G   +  
Sbjct: 171 EV-DGQLKQFQQVLEAIHQAGFETGTVHAAGSFALMHFDDARLDAVRAGSAILGRCRRTK 229

Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTL 283
               + TV   EA I  +R    G  V       + + + +AV  +GY +G+    P + 
Sbjct: 230 GD-GLTTVGYGEASITEVRWLPKGHTVGADKLITMKKPTRVAVLPVGYQNGFGVERPRSQ 288

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
           S L+   +          + G  V ++G I    T+ ++TD      GD  
Sbjct: 289 SLLELWRAWRRSRNRTVRLNGQRVRVIGSIGASETILNVTDV-KCSAGDVA 338


>gi|148557035|ref|YP_001264617.1| alanine racemase domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148502225|gb|ABQ70479.1| alanine racemase domain protein [Sphingomonas wittichii RW1]
          Length = 384

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 134/371 (36%), Gaps = 34/371 (9%)

Query: 12  DLTALKNNWHSMNAL-SGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           D  A   N   +  L     +    A  K + YG+G E+I      AGV  F + + EE 
Sbjct: 26  DERAFHANVEQVRRLLPPGTKIYQCA--KGDGYGVGVERIVCLGVRAGVDGFCLGTPEEA 83

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++ +       + +  G  P     + +  +I  ISSV        L+  G +     ++
Sbjct: 84  LRAKCVAAGRPVLLFAGCDPAALGEMVEAGIIVSISSVEGCE---ALLRSGATGDVFFKL 140

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D GF R GL+  +          +   +     SH     D          +R   LI  
Sbjct: 141 DCGFRRYGLNEPDLRTVLARVRRQSSVRCIGAYSHFGSRADEIVDGGLPLFDRLTRLIED 200

Query: 189 Y--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT-VVTAEARIILI 245
              + IE  +ASS+ IL  P        PG  LYG      +  P Q  V    +R++ +
Sbjct: 201 AVQRPIETMVASSTLILQRPGLGHSAVDPGRLLYGMMAAGPEMPPFQPIVPRISSRLLQV 260

Query: 246 RKALAGELVSYGGQKKL--TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
                  L++ G   K          V  +G+ DG              +    G+  I+
Sbjct: 261 TPFDEARLLTVGYADKTAIPAGGATGVFPLGWIDGLS------------AHRGFGEVLIR 308

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD--- 356
           G  + ++ + T+  ++ +++    + VGD + + G      I L+ +A A G +  +   
Sbjct: 309 GTRLSVVAR-TLQHSIVNLSGLSDVRVGDEVVLVGAQGDEQIGLEAMASAQGMSVTEAHF 367

Query: 357 -LLVRIGTRYA 366
            LL  I     
Sbjct: 368 RLLAAIAAGVP 378


>gi|241888732|ref|ZP_04776039.1| alanine racemase 2 [Gemella haemolysans ATCC 10379]
 gi|241864755|gb|EER69130.1| alanine racemase 2 [Gemella haemolysans ATCC 10379]
          Length = 357

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 125/359 (34%), Gaps = 35/359 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++++   ++ N  ++   + +    AVVK+NAY L   +        G+  F  T  
Sbjct: 1   MATIELNYNNIRQNAINLKEQAQD--IIAVVKNNAYNLDLRECVKLYSEVGINYFATTKE 58

Query: 66  EEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE   +R     +A IF+L   +     +  + N+   I+S+    +  + +        
Sbjct: 59  EECKVIRETLGKEANIFLLNPTY--DFALAREYNIEINIASLE---YLKENIEKLKDLTL 113

Query: 125 ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ---LE 180
            L+      R G   L+E L+       +   +L    SH + AD+        +   L 
Sbjct: 114 QLEFAGSMRRAGAKNLEEVLEII-AFCKENDLKLKGFWSHFSFADEFDGFYEKEKELVLN 172

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLT-RPGISLYGGTD-------KINKSHPM 232
                + +Y      L +S+  L    +      R GI LYG             ++  +
Sbjct: 173 VLDEALKNYDFEVVHLQNSASFLRDGVFEKTTHQRLGIILYGAMPYDVNVNLVALENLVI 232

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T    II I K   GE + Y        D  + +  IGY DG              
Sbjct: 233 KNPITVYGEIINIVKLNKGECIGYSNSYIADVDKKVGIVNIGYGDGILR----------- 281

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
               G    I G    I   + M   + +I +    ++GD + ++    +L D     G
Sbjct: 282 DRLKGKTCIINGKNRNIYSTM-MSHLVVEIGEEE--QIGDRVYVYDDKQQLHDYTKYFG 337


>gi|329767985|ref|ZP_08259496.1| hypothetical protein HMPREF0428_01193 [Gemella haemolysans M341]
 gi|328838470|gb|EGF88078.1| hypothetical protein HMPREF0428_01193 [Gemella haemolysans M341]
          Length = 357

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 125/359 (34%), Gaps = 35/359 (9%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
              ++++   ++ N  ++   S +    AVVK+NAY L   +        G+  F  T  
Sbjct: 1   MATIELNYNNIRQNAINLKERSQD--IIAVVKNNAYNLNLRECVKLYSEVGINYFATTKE 58

Query: 66  EEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           EE   +R      A IF+L   +     ++ + N+   I+S+    +  + +        
Sbjct: 59  EECKVIRETLGEDANIFLLNPTY--NFDLVREYNVEINIASLE---YLKENLENVRDLTL 113

Query: 125 ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ---LE 180
            L+      R G   L+E L+   N   +   +L    SH + AD+        +   L+
Sbjct: 114 QLEFAGSMRRAGARNLEEVLEII-NFCKENTLKLKGFWSHFSFADEFDGFYEKEKELVLK 172

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLT-RPGISLYGGTDKINKSHP-------M 232
                  H+      L +S+  L    +      R GI LYG      K +P       +
Sbjct: 173 VLDEAQKHHDFEVIHLQNSASFLRDGVFEKTTHQRLGIILYGAMPYNVKENPVALKDLII 232

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  +T    II I     GE + Y           + V  IGY DG              
Sbjct: 233 KNPITVYGEIINIVTLNKGECIGYSNSYIADAKKKVGVVNIGYGDGILR----------- 281

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351
               G    I G    I   + M   + +I +  S  +GD + I+    +L D     G
Sbjct: 282 DRLKGQTCIINGKERNIYSTM-MSHLVVEIGEEES--IGDRVYIYDDKQQLHDYTKYFG 337


>gi|309789198|ref|ZP_07683791.1| alanine racemase, catabolic domain protein [Shigella dysenteriae
           1617]
 gi|308922952|gb|EFP68466.1| alanine racemase, catabolic domain protein [Shigella dysenteriae
           1617]
          Length = 165

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 6/151 (3%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL ALK N   +   + +AR  +VVK NAYG G E+I  AL   G    F + 
Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+  I+D   L   + S  QL             
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR-LKAPL 118

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
              L+V++G NRLG      L         +
Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRASE 149


>gi|254304083|ref|ZP_04971441.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324275|gb|EDK89525.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 359

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 145/381 (38%), Gaps = 39/381 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ ++ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFYVSL--DKDALYHNIEYLREYK-QKELLPVIKANAYGHNSLLIAKALYDFNIKTW 57

Query: 61  FVTSVEEGVKLRL-----YTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
            V    E + +       ++    +I V   +      +     + P I+S+      + 
Sbjct: 58  AVARFSEAITIIEYMMDNFSINDFKILVFESLGDDYSFLEKYPEICPTINSI--KDLKNA 115

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L +       +L++D GF R G+  +E  D   N       +   I SHL  A       
Sbjct: 116 LANNISIDRLSLKIDFGFGRNGIKAEEV-DELKNLIKFNSLKFLGIFSHLFSATYTDG-- 172

Query: 175 NSVQLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               +++F  ++S           L +++GI           R G+  YG  +     H 
Sbjct: 173 -LEVIKKFTEVVSKLGRDNFEMVHLQNAAGIYNYDVDVVTHIRTGMLTYGLQEAGFYDHD 231

Query: 232 MQTVVT-AEARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++ V T     +  +R     + V+Y        +   IA   IGY DG+P         
Sbjct: 232 LKPVFTGLIGFVDSVRYVSELDYVAYEDLSSISPKTKKIAKIKIGYGDGFPKA------- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       IK     ++ ++TMD T  ++ D   + VGD + ++    + +++ + 
Sbjct: 285 -----NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKMR 333

Query: 350 SGTTNYDLLVRIGT-RYAKFY 369
           +G +  + L+ I   R  + +
Sbjct: 334 TGLSMLEALIAISPLRIKRIF 354


>gi|58039648|ref|YP_191612.1| alanine racemase, C-terminus [Gluconobacter oxydans 621H]
 gi|58002062|gb|AAW60956.1| Alanine racemase, C-terminus [Gluconobacter oxydans 621H]
          Length = 166

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 13/149 (8%)

Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
                +     VV  +A ++ IR+ L GE V YG   +  R   IA  A+GYADG+    
Sbjct: 19  PITKSAEEPSPVVRLQAHVLQIREILPGEGVGYGLTYRPERVRRIATVAVGYADGFSRHG 78

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG-D-YIQIFGPDI 341
           +G            G  + +   +PILG+++MD  + DI+D    ++G D  + + GP  
Sbjct: 79  AGQ-----------GCAWFEDIRLPILGRVSMDSLIVDISDVPEGKLGPDMMVDLIGPRR 127

Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            +DDVA A+GT  Y++L  +G R+ + Y 
Sbjct: 128 SVDDVAEAAGTIGYEVLTSLGHRFHREYV 156


>gi|109290351|gb|ABG29384.1| alanine racemase [Mitsuokella multacida]
          Length = 150

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 5   EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
                +IDL AL++N+  +   + G A+  AVVK +AYG G   +A     AG     V 
Sbjct: 22  RAAWAEIDLRALRHNYEEIKKNIRGGAKLCAVVKADAYGHGALAVARVAVEAGASYLAVA 81

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSH 122
           ++ E ++LR       I +L  + P + + I D ++  V+  +P     S + +      
Sbjct: 82  TLGEAIELREAGFTTPILLLGLVLPDEARDIVDYDVTQVVCELPLAEAISREAVRQHKVA 141

Query: 123 PYALQVDTG 131
              L+V+TG
Sbjct: 142 KVHLKVETG 150


>gi|256844858|ref|ZP_05550316.1| alanine racemase [Fusobacterium sp. 3_1_36A2]
 gi|256718417|gb|EEU31972.1| alanine racemase [Fusobacterium sp. 3_1_36A2]
          Length = 359

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 141/381 (37%), Gaps = 39/381 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ ++ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFYVSL--DKNALYHNIEYLREYK-QKELLPVIKANAYGHNYLLIAKALYDFNIKTW 57

Query: 61  FVTSVEEGVKLRLYTP------QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
                 E + +  Y          +I V   +      +     + P I+S+      + 
Sbjct: 58  ATARFSEAITITEYMINNFSINDFKILVFESLDDDYSFLEKYPQICPTINSI--KDLKNA 115

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L +       +L++D GF R G+  +E  D   N       +   I SHL  A       
Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGIKAEEV-DELKNLIKFNSLKFLGIFSHLFSATYTDG-- 172

Query: 175 NSVQLERFRTLISHYKG---IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               + +F  +++           L +++GI           R G+  YG  +     H 
Sbjct: 173 -LEVIRKFTEVVNKLGKDNFEMIHLQNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHD 231

Query: 232 MQTVVT-AEARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++ V T     ++ +R     + V+Y        +   IA   IGY DG+          
Sbjct: 232 LKPVFTGLIGYVVSVRYVNELDYVAYEDLSSINPKTKKIAKIKIGYGDGFLKA------- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       IK     ++ ++TMD T  ++ D   + VGD + ++    + +++   
Sbjct: 285 -----NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKTR 333

Query: 350 SGTTNYDLLVRIGT-RYAKFY 369
           +G +  + L+ +   R  + +
Sbjct: 334 TGLSMLEALIALSPLRVKRIF 354


>gi|237741523|ref|ZP_04572004.1| alanine racemase [Fusobacterium sp. 4_1_13]
 gi|229429171|gb|EEO39383.1| alanine racemase [Fusobacterium sp. 4_1_13]
          Length = 359

 Score =  159 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 141/381 (37%), Gaps = 39/381 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ ++ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFYVSL--DKNALYHNIEYLREYK-QKELLPVIKANAYGHNYLLIAKALYDFNIKTW 57

Query: 61  FVTSVEEGVKLRLYTP------QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
                 E + +  Y          +I V   +      +     + P I+S+      + 
Sbjct: 58  ATARFSEAITITEYMINNFSINDFKILVFESLDDDYSFLEKYPQICPTINSI--KDLKNA 115

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L +       +L++D GF R G+  +E  D   N       +   I SHL  A       
Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGIKAEEV-DELKNLIKFNSLKFLGIFSHLFSATYTDG-- 172

Query: 175 NSVQLERFRTLISHYKG---IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               + +F  +++           L +++GI           R G+  YG  +     H 
Sbjct: 173 -LEVIRKFTEVVNKLGKDNFEMIHLQNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHD 231

Query: 232 MQTVVT-AEARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++ V T     ++ +R     + V+Y        +   IA   IGY DG+          
Sbjct: 232 LKPVFTGLIGYVVSVRYVNELDYVAYEDLSSINPKTKKIAKIKIGYGDGFLKA------- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       IK     ++ ++TMD T  ++ D   + VGD + ++    K +++   
Sbjct: 285 -----NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HKPNEMKTR 333

Query: 350 SGTTNYDLLVRIGT-RYAKFY 369
           +G +  + L+ +   R  + +
Sbjct: 334 TGLSMLEALIALSPLRVKRIF 354


>gi|237745050|ref|ZP_04575531.1| alanine racemase [Fusobacterium sp. 7_1]
 gi|229432279|gb|EEO42491.1| alanine racemase [Fusobacterium sp. 7_1]
          Length = 359

 Score =  159 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 143/381 (37%), Gaps = 39/381 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ ++ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFYVSL--DKDALYHNIEYLREYK-QKELLPVIKANAYGHNSLLIAKALYDFNLKTW 57

Query: 61  FVTSVEEGVKLRL-----YTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
            V    E + +       ++    +I V   ++     +     + P I+S+      + 
Sbjct: 58  AVARFSEAISITEYMMNNFSINDFKILVFESLNDDYSFLEKYPQICPTINSI--KDLKNA 115

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L +       +L++D GF R G+  +E  D   N       +   I SHL  A       
Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGVKEEEV-DELKNLIKFNSLKFLSIFSHLFSASYTDG-- 172

Query: 175 NSVQLERFRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               + +F  +++           L +++GI           R G+  YG  +       
Sbjct: 173 -LEVIRKFTEVVNKLGRNNFQMIHLQNAAGIYNYDVEVVTHVRTGMLTYGLQEAGFYDLD 231

Query: 232 MQTVVT-AEARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++ V T     +  +R     + V+Y        +   IA   IGY DG+          
Sbjct: 232 LKPVFTGLIGYVDSVRYVNELDYVAYEDLSSISPKTKKIAKIKIGYGDGFLKA------- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       IK     ++ ++TMD T  ++ D   + VGD + ++    + +++ L 
Sbjct: 285 -----NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKLR 333

Query: 350 SGTTNYDLLVRIGT-RYAKFY 369
           +G +  + L+ I   R  + +
Sbjct: 334 TGISMLEFLIAISPLRVKRIF 354


>gi|260494827|ref|ZP_05814957.1| alanine racemase [Fusobacterium sp. 3_1_33]
 gi|260197989|gb|EEW95506.1| alanine racemase [Fusobacterium sp. 3_1_33]
          Length = 359

 Score =  159 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 144/381 (37%), Gaps = 39/381 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ ++ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFYVSL--DKDALYHNIEYLREYK-QKELLPVIKANAYGHNSLLIAKALYDFNLKTW 57

Query: 61  FVTSVEEGVKLRL-----YTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
            V    E + +       ++    +I V   ++     +   + + P I+S+      + 
Sbjct: 58  AVARFSEAISITEYMMNNFSINDFKILVFESLNDDYSFLEKYSQICPTINSI--KDLKNA 115

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L +       +L++D GF R G+  +E  D   N       +   I SHL  A       
Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGVKEEEV-DELKNLIKFNSLKFLSIFSHLFSASYTDG-- 172

Query: 175 NSVQLERFRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               + +F  +++           L +++GI           R G+  YG  +       
Sbjct: 173 -LEVIRKFTEVVNKLGRNNFQMIHLQNAAGIYNYDVEVVTHIRTGMLTYGLQEAGFYDLD 231

Query: 232 MQTVVT-AEARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++ V T     +  +R     + V+Y        +   IA   IGY DG+          
Sbjct: 232 LKPVFTGLIGYVDSVRYVNELDYVAYEDLSSISPKTKKIAKIKIGYGDGFLKA------- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       IK     I+ ++TMD T  ++ D   + VGD + ++    + +++ L 
Sbjct: 285 -----NNKTTCLIKKKEY-IISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKLR 333

Query: 350 SGTTNYDLLVRIGT-RYAKFY 369
           +G +  + L+ I   R  + +
Sbjct: 334 TGISMLEFLIAISPLRVKRIF 354


>gi|154497027|ref|ZP_02035723.1| hypothetical protein BACCAP_01320 [Bacteroides capillosus ATCC
           29799]
 gi|150273426|gb|EDN00554.1| hypothetical protein BACCAP_01320 [Bacteroides capillosus ATCC
           29799]
          Length = 355

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 119/338 (35%), Gaps = 15/338 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L I+  A+K N   +   +G A   A +  +A G G   +A  L + G+  F V+   + 
Sbjct: 4   LIIERQAVKQNIAVVRERAGRAAIYAALTGDAGGAGLVDMARLLRDEGIGRFAVSEAADA 63

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYA 125
             LR        I +L      +E   + D N +  I S+      + L     +     
Sbjct: 64  AALRKAGFVDEEILMLRSTADREELEQLVDVNAVCTIGSIDAGLALNGLAESRSTVAEAH 123

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +QVDTG    G    E         N     +S I + L           + Q++ F+TL
Sbjct: 124 IQVDTGLGFGGFLCTEPEKVLSAYRNLPNVAISGIYTQLHSVKADGKDA-AAQIQSFQTL 182

Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           +   +           A S  +L   +      R G  L G   +      +Q V   EA
Sbjct: 183 LEAIRSAGFETGTVHAAGSFALLHYDDALLDAVRAGSVLLGRCRRTKGD-GLQRVGYGEA 241

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP----LTLSGLDSEHSPSVFL 296
            +  +R   AG  V       L R + + V  +GY +G+            +        
Sbjct: 242 SLEEVRWLPAGHTVGSEQPVTLKRPTRVGVLPVGYQNGFGVARVRDPGFWAAIRRWLRGR 301

Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
                I G  V ++G+I    T+ D+TD +    GD +
Sbjct: 302 RISVRIDGQKVKVIGRIGAMETLLDVTD-MKCSSGDLV 338


>gi|256026743|ref|ZP_05440577.1| alanine racemase [Fusobacterium sp. D11]
 gi|289764740|ref|ZP_06524118.1| alanine racemase [Fusobacterium sp. D11]
 gi|289716295|gb|EFD80307.1| alanine racemase [Fusobacterium sp. D11]
          Length = 359

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 143/381 (37%), Gaps = 39/381 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ ++ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFYVSL--DKDALYHNIEYLREYK-QKELLPVIKANAYGHNSLLIAKALYDFNLKTW 57

Query: 61  FVTSVEEGVKLRL-----YTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
            V    E + +       ++    +I V   ++     +     + P I+S+      + 
Sbjct: 58  AVARFSEAISITEYMMNNFSINDFKILVFESLNDDYSFLEKYPQICPTINSI--KDLKNA 115

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L +       +L++D GF R G+  +E  D   N       +   I SHL  A       
Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGVKEEEV-DELKNLIKFNSLKFLSIFSHLFSASYTDG-- 172

Query: 175 NSVQLERFRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               + +F  +++           L +++GI           R G+  YG  +       
Sbjct: 173 -LEVIRKFTEVVNKLGRNNFQMIHLQNAAGIYNYDVEVVTHIRTGMLTYGLQEAGFYDLD 231

Query: 232 MQTVVT-AEARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++ V T     +  +R     + V+Y        +   IA   IGY DG+          
Sbjct: 232 LKPVFTGLIGYVDSVRYVNELDYVAYEDLSSISPKTKKIAKIKIGYGDGFLKA------- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       IK     I+ ++TMD T  ++ D   + VGD + ++    + +++ L 
Sbjct: 285 -----NNKTTCLIKKKEY-IISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKLR 333

Query: 350 SGTTNYDLLVRIGT-RYAKFY 369
           +G +  + L+ I   R  + +
Sbjct: 334 TGISMLEFLIAISPLRVKRIF 354


>gi|218516484|ref|ZP_03513324.1| alanine racemase protein [Rhizobium etli 8C-3]
          Length = 189

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 15/175 (8%)

Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPG-ISLYGG-TDKINKSHPMQTVVTAEAR 241
            +   + G   S A+S G+ LG  YH  L RP    LYGG T     ++PM+ VV  +  
Sbjct: 2   RIADEFPGFNISFANSGGVFLGDAYHGVLARPRHTPLYGGRTITPAGTNPMEPVVRLDVA 61

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           ++  R   +G  + YGG     R++ +A  A GYADG P +L    +            +
Sbjct: 62  VVQTRTVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDCSA-----------VY 110

Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN 354
            KG  +PI+G+++MD    DIT      + +G  +++ GP+  L+DVA A+GT +
Sbjct: 111 HKGIRLPIIGRVSMDSATVDITALPEGALRLGSLVEVLGPNQTLEDVAGAAGTIS 165


>gi|294785861|ref|ZP_06751149.1| alanine racemase [Fusobacterium sp. 3_1_27]
 gi|294487575|gb|EFG34937.1| alanine racemase [Fusobacterium sp. 3_1_27]
          Length = 359

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 141/381 (37%), Gaps = 39/381 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ ++ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFYVSL--DKNALYHNIEYLREYK-QKELLPVIKANAYGHNYLLIAKALYDFNIKTW 57

Query: 61  FVTSVEEGVKLRLYTP------QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
                 E + +  Y          +I V   +      +     + P I+S+      + 
Sbjct: 58  ATARFSEAITITEYMINNFSINDFKILVFESLDDDYSFLEKYPQICPTINSI--KDLKNA 115

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L +       +L++D GF R G+  +E  D   N       +   I SHL  A       
Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGIKAEEV-DELKNLIKFNSLKFLGIFSHLFSATYTDG-- 172

Query: 175 NSVQLERFRTLISHYKG---IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               + +F  +++           L +++GI           R G+  YG  +     H 
Sbjct: 173 -LEVIRKFTGVVNKLGKDNFEMIHLQNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHD 231

Query: 232 MQTVVT-AEARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++ V T     ++ +R     + V+Y        +   IA   IGY DG+          
Sbjct: 232 LKPVFTGLIGYVVSVRYVNELDYVAYEDLSSINPKTKKIAKIKIGYGDGFLKA------- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       IK     ++ ++TMD T  ++ D   + VGD + ++    + +++   
Sbjct: 285 -----NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKTR 333

Query: 350 SGTTNYDLLVRIGT-RYAKFY 369
           +G +  + L+ +   R  + +
Sbjct: 334 TGLSMLEALIALSPLRVKRIF 354


>gi|323359913|ref|YP_004226309.1| alanine racemase [Microbacterium testaceum StLB037]
 gi|323276284|dbj|BAJ76429.1| alanine racemase [Microbacterium testaceum StLB037]
          Length = 347

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 128/378 (33%), Gaps = 57/378 (15%)

Query: 10  KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF---VTSVE 66
           ++DL A   N H +      A    VVKD+AY  G E +     + GV+ F    V +  
Sbjct: 6   RVDLDAFARNLHRVRDAVAPAEPMFVVKDDAYAHGLEVLVRRARSEGVRWFGAFDVVT-- 63

Query: 67  EGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
            G  +R    P ARIFV               +L   +     L   + L + G S    
Sbjct: 64  -GAAVRAIAGPDARIFVWLIGGADDLAAGIAADLDLGVGDQSLLDDLAALTADG-SARVH 121

Query: 126 LQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
           L++DTG +R G+  ++    L  T     +   +   I SH++ A D            F
Sbjct: 122 LKIDTGLHRNGIRPEDWDAALARTATLVEQGRVRFEGIWSHISEASDADDDDARA---LF 178

Query: 183 RTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQT 234
                  +  G+E     LA+S+       +   L R G   YG             ++ 
Sbjct: 179 LAARDAARAVGLEPRFSHLAASAAGFARGEFREDLVRVGAFSYGIRPAGGPGEAELGIEP 238

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
           + +  A +  +                   DS      +G A G P  L+G     + + 
Sbjct: 239 IASLTATVASV-------------------DSQGVHVDVGSAHGLPSALAGRFDVATSAG 279

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASGT 352
                       V  +G      T   +    + EVG+ + IFG        D+A    T
Sbjct: 280 P---------RRVEAIG-----FTSLTVAPWETAEVGEPLTIFGRGALCSATDLAELIDT 325

Query: 353 TNYDLLVRIGTRYAKFYT 370
              ++ +R+     + YT
Sbjct: 326 IGEEIALRVSPVLPRVYT 343


>gi|19703826|ref|NP_603388.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713976|gb|AAL94687.1| Alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 359

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 142/381 (37%), Gaps = 39/381 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ ++ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFYVSL--DKNALYHNIEYLREYK-QKELLPVIKANAYGHNYLLIAKALYDFNIKTW 57

Query: 61  FVTSVEEGVKLRL-----YTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
                 E + +       ++    +I V   +      +     + P I+S+      + 
Sbjct: 58  AAARFSEAITITEYMMNNFSINDFKILVFESLDDDYSFLEKYPQICPTINSI--KDLKNA 115

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L +       +L++D GF R G+  +E  D   N       +   I SHL  +       
Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGIKTEEV-DELKNLIKFNSLKFLGIFSHLFSSTYTDG-- 172

Query: 175 NSVQLERFRTLISHYKG---IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               + +F  +++           L +++GI           R G+  YG  +     H 
Sbjct: 173 -LEVIRKFTEVVNKLGKDNFEMVHLQNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHD 231

Query: 232 MQTVVT-AEARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++ V T     +  +R     + V+Y        +   IA   IGY DG+P         
Sbjct: 232 LKPVFTGLIGYVDSVRYVNELDYVAYEDLTSISPKTKKIAKIKIGYGDGFPKA------- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       IK     ++ ++TMD T  ++ D   + VGD + ++    + +++   
Sbjct: 285 -----NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKTR 333

Query: 350 SGTTNYDLLVRIGT-RYAKFY 369
           +G +  + L+ +   R  + +
Sbjct: 334 TGLSMLEALIALSPLRVKRIF 354


>gi|16417160|gb|AAL18607.1|AF384669_1 alanine racemase [Francisella novicida]
          Length = 210

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 23/219 (10%)

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG----IEASLASSSGI 202
             ++      L  + SHLACAD+     N  Q  RF +++   KG    I   L++S G 
Sbjct: 2   QRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVEFTKGLSQDIICHLSNSYGF 61

Query: 203 LLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQ 259
           L      + + RPGI  YG   +         ++ +    ++++ I     GE V Y   
Sbjct: 62  LGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSKVVKIITLQEGEGVGYSLI 121

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
            +      +AV  IGY DG+P  L              G   I   M P+ G+++MD   
Sbjct: 122 YRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVNINDVMYPMAGRMSMDGLT 170

Query: 320 FDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTT 353
             +  +   ++V D +++             +A  + T 
Sbjct: 171 VSLGINEYDVKVSDTVELISAIPRNRNSAFSIANQTNTI 209


>gi|296328819|ref|ZP_06871332.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154050|gb|EFG94855.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 359

 Score =  156 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 142/381 (37%), Gaps = 39/381 (10%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M+++ ++ L  D  AL +N   +           V+K NAYG     IA ALY+  ++ +
Sbjct: 1   MNTSFYVSL--DKNALYHNIEYLREYK-QKELLPVIKANAYGHNYLLIAKALYDFNIKTW 57

Query: 61  FVTSVEEGVKLRL-----YTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
                 E + +       ++    +I V   +      +     + P I+S+      + 
Sbjct: 58  AAARFSEAITITEYMMNNFSINDFKILVFESLDDYYSFLEKYPQICPTINSI--KDLKNA 115

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
           L +       +L++D GF R G+  +E  D   N       +   I SHL  +       
Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGIKAEEV-DELKNLIKFNSLKFLGIFSHLFSSTYTDG-- 172

Query: 175 NSVQLERFRTLISHYKG---IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
               + +F  +++           L +++GI           R G+  YG  +     H 
Sbjct: 173 -LEVIRKFTEVVNKLGKDNFEMVHLQNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHD 231

Query: 232 MQTVVT-AEARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           ++ V T     +  +R     + V+Y        +   IA   IGY DG+P         
Sbjct: 232 LKPVFTGLIGYVDSVRYVNELDYVAYEDLTSISPKTKKIAKIKIGYGDGFPKA------- 284

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349
                       IK     ++ ++TMD T  ++ D   + VGD + ++    + +++   
Sbjct: 285 -----NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKTK 333

Query: 350 SGTTNYDLLVRIGT-RYAKFY 369
           +G +  + L+ +   R  + +
Sbjct: 334 TGLSMLEALIALSPLRVKRIF 354


>gi|254507449|ref|ZP_05119584.1| alanine racemase 1 [Vibrio parahaemolyticus 16]
 gi|219549705|gb|EED26695.1| alanine racemase 1 [Vibrio parahaemolyticus 16]
          Length = 113

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 11/123 (8%)

Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307
             AGE V YGG+    RD+ + V AIGY DGYP T              G    + G  V
Sbjct: 1   MKAGESVGYGGKWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVRVNGREV 49

Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367
           PI G+++MDM   D+    +  VGD   ++G D+  + VA   GT  Y+L+ ++ +R   
Sbjct: 50  PIAGRVSMDMLTVDLGPEATDHVGDEAILWGKDLPAEQVAAHIGTIAYELVTKLTSRVEM 109

Query: 368 FYT 370
            Y+
Sbjct: 110 EYS 112


>gi|219121969|ref|XP_002181328.1| alanine racemase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407314|gb|EEC47251.1| alanine racemase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 710

 Score =  155 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 111/305 (36%), Gaps = 65/305 (21%)

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ------------EALDFTHNSFNKKL-----GQLSL 159
           +      +   VD+G  RLG   +            + ++   +  + ++      +   
Sbjct: 420 ATRKRLRWHALVDSGMGRLGFKTEPVKKEDALAGRRDTVEILQDMLDAEINGNAPIEFYG 479

Query: 160 IISHLACADDPSSHVNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQ--- 211
           + +H+A A   S      Q+ +F  L+   +  GI     S  +S+ +L     HF    
Sbjct: 480 MCTHMAEATATSD-FTKSQIAKFINLLKRVRSAGIYIPTVSTDNSAALLTTNLTHFNPSE 538

Query: 212 -----------LTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
                        R G ++YG     ++   +Q V T  A +  +     GE V Y    
Sbjct: 539 ILSQKDSDTRGFVRTGGAIYGQRPAFDE---LQAVSTLLASVRHVAILKQGESVGYDRAY 595

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
               +  IA   IG+ADGYP  L              GK  I+G + P+ G + MDM M 
Sbjct: 596 IAPYNVRIATLTIGFADGYPRELGNGV----------GKVQIRGSVFPVAGNVCMDMLMI 645

Query: 321 DITDSLS------IEVGDYIQIFGP--------DIKLDDVALASGTTNYDLLVRIGT-RY 365
           ++  +        + VGD   ++GP         ++L D+A    TT   L   +   R 
Sbjct: 646 ELGPAEDTDIGSTVAVGDTAVLWGPLDENDDYGMVRLQDLATTLKTTQSALTCGLDKIRV 705

Query: 366 AKFYT 370
            + + 
Sbjct: 706 LRQFV 710



 Score = 93.2 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 10  KIDLTALKNNWHSMNALSGNAR--TAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVE 66
           +I L+AL++N+  + + +   R    AVVK + YG G    A  L +  G   F V ++E
Sbjct: 39  RIRLSALQHNFAFVESTAARQRCSVIAVVKADGYGHGAIATALHLADRCGADAFAVATLE 98

Query: 67  EGVKLRLYTPQAR 79
           E + LR    +  
Sbjct: 99  EAISLRRAFERNP 111


>gi|320546814|ref|ZP_08041121.1| alanine racemase [Streptococcus equinus ATCC 9812]
 gi|320448531|gb|EFW89267.1| alanine racemase [Streptococcus equinus ATCC 9812]
          Length = 192

 Score =  155 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 81/227 (35%), Gaps = 42/227 (18%)

Query: 148 NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLASSSGILLG 205
              N++   +  I +H A AD+        Q   F  L+    YK      ++S+  +  
Sbjct: 3   AKLNEQGCHVEGIFTHFATADEADLDKFEQQFSFFSELVDNLAYKPDLVHASNSATSIWH 62

Query: 206 PNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262
               F   R GI +YG      ++    P++  ++ E+ ++ ++K  AG  + Y      
Sbjct: 63  SETIFNAVRLGIVIYGLNSSGRELELPFPLKPALSLESSLVHVKKLEAGADIGYRATYTT 122

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
           + +  I    I YADG+ L L               K +  G  V ++G           
Sbjct: 123 SGEEYIGTVPIIYADGWTLHLP--------------KKYTLGIKVTLIG----------- 157

Query: 323 TDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
                   GD        +   ++A    T NY++L  +  R  + Y
Sbjct: 158 ------GSGD------NSVSATNLAQYKQTINYEVLCLLSDRIPRIY 192


>gi|218661516|ref|ZP_03517446.1| alanine racemase protein [Rhizobium etli IE4771]
          Length = 130

 Score =  152 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 13/141 (9%)

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291
           M+ VV  +  ++  R   +G  + YGG     R + +A  A GYADG P +L        
Sbjct: 1   MEPVVRLDVAVVQTRTVPSGAKIGYGGAHVTRRQTRLATIAAGYADGLPRSLGDR----- 55

Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALA 349
                 G  + KG  +PI+G+++MD T  DIT      + +G  +++ GP+  LDDVA  
Sbjct: 56  ------GAVYHKGIRLPIVGRVSMDSTTVDITALPEGALSLGSLVEVLGPNQTLDDVAGD 109

Query: 350 SGTTNYDLLVRIGTRYAKFYT 370
           +GT +Y++L  +G RY + Y 
Sbjct: 110 AGTISYEILTGLGDRYDRQYC 130


>gi|213622235|ref|ZP_03375018.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 178

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L +DL A+ +N+ ++      A+  AV+K N YGLG E IAPALY A  + FFV  + EG
Sbjct: 14  LCVDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEG 73

Query: 69  VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126
           V LR      A + +L G+ P          + P+++SV Q+  +  L        P  +
Sbjct: 74  VALRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLI 133

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
           Q+D+G +RLG++ ++          +       IISHLA AD P 
Sbjct: 134 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPD 178


>gi|313619775|gb|EFR91379.1| alanine racemase [Listeria innocua FSL S4-378]
          Length = 161

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 6/146 (4%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +  N L       AVVK NAYG G  + A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQNKLPDKVALWAVVKANAYGHGIIETAKIAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
             ++E + LR    +   I VL         +    N+   +     L       +    
Sbjct: 66  AILDEALALREAGFRNESILVLGATRKEDANLAAKNNISVTVFREDWLDDL----TLEAP 121

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTH 147
               L+VD+G  RLG+  +E      
Sbjct: 122 LRIHLKVDSGMGRLGIRSREEAQRIE 147


>gi|1373382|gb|AAB17466.1| alanine racemase [Treponema pallidum]
          Length = 178

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 7/173 (4%)

Query: 30  ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89
           AR    VK +AYG G   +A A  + GV  F V  V+E  +LR    +A I  L      
Sbjct: 6   ARVCLPVKADAYGHGACDVAQAALSCGVHSFAVACVQEASQLRAAGVRAPILCLSTPTAE 65

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKL----MSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
           +   + +  +  VIS    +   ++        G +    +++DTG  R+G +  EA   
Sbjct: 66  EISSLIEHRVHTVISERAHIALIARALRQSADTGATCGVHVKIDTGMGRIGCAPDEACAL 125

Query: 146 THNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERFRTLISHYKGIEAS 195
                      L  + +H + AD           +Q   F   + + +    S
Sbjct: 126 VQMVCATPGLHLEGVCTHFSVADSVRAEDLQYTEMQRAHFMHCVQYIRKSGIS 178


>gi|325273197|ref|ZP_08139484.1| alanine racemase [Pseudomonas sp. TJI-51]
 gi|324101674|gb|EGB99233.1| alanine racemase [Pseudomonas sp. TJI-51]
          Length = 113

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
              R  IDL AL++N+     L+G A+  AV+K +AYG G  + A AL  A    F V  
Sbjct: 2   RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALAL-EAEADGFAVAC 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLM 116
           +EE ++LR    +A + +L G     E  +I + +L  V+ S+ QL    K  
Sbjct: 60  IEEALELRGAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEKAQ 112


>gi|322805977|emb|CBZ03544.1| alanine racemase [Clostridium botulinum H04402 065]
          Length = 121

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 45/119 (37%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
            ++  +  +++L  L  N  ++          AVVK N YG G   IA  L   G     
Sbjct: 3   RNHRPVWEEVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLS 62

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           V  + E  +LR       I +L    P   + I D N+ PV+ S       SK  S   
Sbjct: 63  VACLSEATELREGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDYANQLSKAASLKK 121


>gi|153841826|ref|ZP_01993440.1| alanine racemase 1 [Vibrio parahaemolyticus AQ3810]
 gi|149745444|gb|EDM56695.1| alanine racemase 1 [Vibrio parahaemolyticus AQ3810]
          Length = 129

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M   +  +  IDL+AL++N   + A +  ++  AVVK N YG G   +A          F
Sbjct: 1   MSYMKAAKACIDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHA--NHADAF 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKL 115
            V  +EE ++LR       I +L G + PG   ++   N+  V+    QL    + 
Sbjct: 59  GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQA 114


>gi|28493463|ref|NP_787624.1| alanine racemase [Tropheryma whipplei str. Twist]
 gi|28572425|ref|NP_789205.1| alanine racemase I [Tropheryma whipplei TW08/27]
 gi|28410556|emb|CAD66942.1| alanine racemase I [Tropheryma whipplei TW08/27]
 gi|28476504|gb|AAO44593.1| alanine racemase [Tropheryma whipplei str. Twist]
          Length = 386

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 146/401 (36%), Gaps = 72/401 (17%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           SN   +  I L  LK N   +      A+   V+K NA G G  ++A     +G+++F V
Sbjct: 8   SNSHAQAFISLGTLKKNLLWLQNEVAPAKVFMVIKANANGHGTMRVAEVAKMSGIRNFAV 67

Query: 63  TSVEEGVKL-RLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYS------- 113
              +E + + R  +P  R+F  +          + + N+   I +  QL + +       
Sbjct: 68  LLPKEALLIKRALSPGVRVFTWHITPDCEDLPSLIENNIEIGIGAEWQLRYIASCVKKTM 127

Query: 114 --KLMSCGVSHPYALQVDTGFNRLGLSLQEALD---FTHNSFNKKLGQLSLIISHLACAD 168
             +++S        L++DTG +R G  +++  +      +     L +++   SHL+   
Sbjct: 128 TCEVLSGYKPALIHLKLDTGLSRGGCGVKDWQNLVCLAQDFQEMGLIKITGFWSHLSNT- 186

Query: 169 DPSSHVNSVQLERFRTLI--------SHYKGIEASLASSSGILLGPNYHFQLTRPGISLY 220
             S   +   L+ F   +           + I   +A+S   L  P       R G+S +
Sbjct: 187 --SPEEDRRSLKIFTENVTPYLASYSRRARPIM-HIAASVAALGLPESRLDYVRLGLSCF 243

Query: 221 GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           G  +K       + V+T  A II                K L      A+ A G+ADG  
Sbjct: 244 GYYEKEEL----KGVMTLVAPII----------------KFLPEQGR-AIIACGFADGIS 282

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD-----ITDSLSIEVGDY-- 333
             L+  ++          +    G    ++ +I  D    D     + +S      D   
Sbjct: 283 -PLAVRNNVPLTGRSNRARLIEVGPETSVI-EICQD---IDRRQDNLQNSYDHVPQDPFL 337

Query: 334 ---------IQIFG----PDIKLDDVALASGTTNYDLLVRI 361
                    + +FG     ++     A + GTT  D+L R+
Sbjct: 338 NALRVSQNHVILFGSGGLSELTARQWAESCGTTIDDVLSRV 378


>gi|227432609|ref|ZP_03914587.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351645|gb|EEJ41893.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 226

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 90/236 (38%), Gaps = 23/236 (9%)

Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSS 200
           +        +       + +H A AD P+      Q+  ++ L         E   A++ 
Sbjct: 1   MAAIQEVSAQDTLIFQSMWTHFATADTPNVDYVDFQISEWQRLTHDLPVEPNENHFANTG 60

Query: 201 GILLGP-NYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSY 256
                P   +  + R GI L+G       ++    +   ++ +A+++  +    G  V Y
Sbjct: 61  IATWYPEKINTDIVRLGIGLFGINGSVPIMSMPFELIPALSLKAKVVNSKPLKKGNAVGY 120

Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316
           G +     D  +    IG++DGYP   SG+ +  +            G +  I+G + MD
Sbjct: 121 GAEYHAPNDGYLITIPIGHSDGYPFNGSGMRALVA-----------DGQIGHIVGGVAMD 169

Query: 317 MTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
            +M  +T+   + VG  + + G      I + D+A  + ++   L+     R  + 
Sbjct: 170 QSMIFVTN--PVAVGTTVTLIGRVGDQSITMQDLAEHTQSSIVALMNDFAPRLQRI 223


>gi|213582016|ref|ZP_03363842.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 113

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306
              AGE V YGG   +T++  I + A GYADGYP                G    + G  
Sbjct: 1   TLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTPVLVDGIR 49

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
              +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y LL  +  R  
Sbjct: 50  TRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLLCAVAPRVP 109


>gi|325526091|gb|EGD03753.1| alanine racemase [Burkholderia sp. TJI49]
          Length = 117

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 11/106 (10%)

Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320
              R   I V A GYADGYP                G    + G M  ++G+++MDM   
Sbjct: 1   TADRPMRIGVVACGYADGYPRHA-----------PTGTPIAVDGVMTRVVGRVSMDMLTV 49

Query: 321 DITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           D+T   +  +G  ++++G  +K+DDVA ASGT  Y+L+  +  R  
Sbjct: 50  DLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCALARRVP 95


>gi|167949693|ref|ZP_02536767.1| alanine racemase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 182

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 4/180 (2%)

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           ++LR       + VL G+   +       + + V     Q     +           L+V
Sbjct: 1   MRLRAAGIDKPLLVLEGVFDAEALRAAAAHQVAVTVHQTQQLELLEQTLLAHPIEVWLKV 60

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
           D+G +RLG   +                +  +++HLA ADDP    N  Q  RF   I  
Sbjct: 61  DSGMHRLGFRPEAVAAVAQRLQQTPALGVLHLMTHLANADDPQDPANQDQCVRFD-AIDT 119

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILI 245
               + S+A+S+G+L  P       RPGI LYG +       +   ++ V+   A +I +
Sbjct: 120 TPFAQLSIANSAGLLAFPECQRDWVRPGIMLYGVSPFSEGSGEPLGLKPVMRFSAPVIAV 179


>gi|309806954|ref|ZP_07700936.1| alanine racemase, N-terminal domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166574|gb|EFO68771.1| alanine racemase, N-terminal domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 123

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 1/111 (0%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +   ++ +DL A+K+N  + +  L    +  AVVK N YG G   I+     AG Q   V
Sbjct: 6   HRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGAQGLCV 65

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
             ++E ++LR    +  I VL    P    +  + ++   +  +  L   +
Sbjct: 66  AILDEAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKKLA 116


>gi|213417243|ref|ZP_03350387.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 108

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 11/116 (9%)

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           V YGG     RD+ + V A+GY DGYP                G    + G  VPI+G++
Sbjct: 2   VGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLVNGREVPIVGRV 50

Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
            MDM   D+  +     GD + ++G  + ++ +A  +  + Y+L+ R+ +R A  Y
Sbjct: 51  AMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRLTSRVAMKY 106


>gi|1150619|emb|CAA90279.1| AlaR [Streptococcus pneumoniae]
          Length = 111

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 18/124 (14%)

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
           AG  + YG   +   + +IA   IGYADG+   +                  + G   PI
Sbjct: 1   AGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS------------VLVDGQACPI 48

Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRY 365
           +G+++MD     +     +  G  + + G     +I    VA    T NY+ +  +  R 
Sbjct: 49  VGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTINYEEVCLLSDRI 106

Query: 366 AKFY 369
            + Y
Sbjct: 107 PREY 110


>gi|255024620|ref|ZP_05296606.1| hypothetical protein LmonocyFSL_16286 [Listeria monocytogenes FSL
           J1-208]
          Length = 118

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 4   NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +    ++ID  A++ N  +    L  N    AVVK NAYG G  ++A     AG + F V
Sbjct: 6   HRPTWIEIDRAAIRENIKNEQRKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65

Query: 63  TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112
             ++E + LR    Q   I VL         +    ++   +     L   
Sbjct: 66  AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLENL 116


>gi|295115115|emb|CBL35962.1| Alanine racemase [butyrate-producing bacterium SM4/1]
          Length = 155

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 8   RLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            L+IDL  +++N+ ++ +++    +    VK NAYG G  +   AL  A      V +++
Sbjct: 11  WLEIDLDTIRSNFAALRSMAGPGIKIMPAVKANAYGHGIVESCRALEEAEADYLGVGNID 70

Query: 67  EGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E + LR    Q  I +  G +      +    +LIP I SV      S+L      HP  
Sbjct: 71  EAILLREIGIQTPILIFAGNLVEEVADLYIRYSLIPTIFSVKAAQAISRLSKA--EHPVF 128

Query: 126 LQV 128
           L +
Sbjct: 129 LGI 131


>gi|237739789|ref|ZP_04570270.1| alanine racemase [Fusobacterium sp. 2_1_31]
 gi|229423397|gb|EEO38444.1| alanine racemase [Fusobacterium sp. 2_1_31]
          Length = 315

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 35/333 (10%)

Query: 48  IAPALYNAGVQDFFVTSVEEGVKLRLYTPQA-----RIFVLYGIHPGQEKIIFDTNLIPV 102
           IA ALY+  V+ + V    E V +  Y         +I +   +      +     + P 
Sbjct: 2   IAKALYDYDVKVWAVARYSEAVSICEYFKTLSIDDFKILIFESLIDDYSLLEKYPQICPT 61

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
           ++S+      + L +       +L++D GF R G+  +E  D   N       +   I S
Sbjct: 62  LNSI--KDLKNALANNISIDRLSLKIDFGFGRNGIKAEEV-DELKNLIKYNSLKFLSIFS 118

Query: 163 HLACADDPSSHVNSVQLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISL 219
           HL  A           +++F  L++           L +++GI           R G+  
Sbjct: 119 HLFSASYTDG---LEVIKKFTDLVNMLGRNNFEMVHLQNAAGIYNYDVDIVTHIRTGMLT 175

Query: 220 YGGTDKINKSHPMQTVVT-AEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYAD 277
           YG  +       M+ V T     +  +R     + V+Y     +   +  IA   IGY D
Sbjct: 176 YGLQEAGFYDLDMKPVFTGLIGYVDSVRYVNELDYVAYQELSSIDPGTKKIAKIKIGYGD 235

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
           G+                      IK     ++ ++TMD T  ++ D   + VGD + ++
Sbjct: 236 GFSKA------------NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDEVHLY 280

Query: 338 GPDIKLDDVALASGTTNYDLLVRIGT-RYAKFY 369
               + +++   +G +  +LL+ I   R  + +
Sbjct: 281 ---HRPNEIKTKTGFSMLELLIAISPLRVKRIF 310


>gi|213859640|ref|ZP_03385344.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 125

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
             ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3   RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSH 122
           ++EE + LR    +  I +L G    Q+   +D   L   I S  Q      L +  ++ 
Sbjct: 60  NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQ---LKALQNARLNA 116

Query: 123 PYALQV 128
           P  + V
Sbjct: 117 PLDIYV 122


>gi|213023501|ref|ZP_03337948.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 110

 Score =  129 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 15/119 (12%)

Query: 213 TRPGISLYGGTDKINKSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
            RPGI LYG +   +K        Q V++  + +I +R   AGE V YGG     RD+ +
Sbjct: 1   ARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRL 60

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327
            V A+GY DGYP                G    + G  VPI+G++ MDM   D+  +  
Sbjct: 61  GVVAMGYGDGYPRAA-----------PSGTPVLVNGREVPIVGRVAMDMICVDLGPNAQ 108


>gi|329769055|ref|ZP_08260477.1| hypothetical protein HMPREF0433_00241 [Gemella sanguinis M325]
 gi|328839546|gb|EGF89122.1| hypothetical protein HMPREF0433_00241 [Gemella sanguinis M325]
          Length = 317

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 100/304 (32%), Gaps = 35/304 (11%)

Query: 48  IAPALYNAGVQDFFVTSVEEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106
           ++     AG+  F  T  EE   +R     +  IF+L        +++   N+   I+++
Sbjct: 1   MSKFFSEAGINYFATTKEEECKIIRETLGEEVSIFLLNPTR--DFELVRKYNIEVNIANL 58

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLA 165
               +  + +         L+      R G  +L E L+   N   +    L    SH +
Sbjct: 59  D---YLKENIDELRDLTLQLEFAGSMRRAGAKTLDEVLEII-NFCKENNLNLKGFWSHFS 114

Query: 166 CADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSSGILLGPNYHFQLT-RPGISLY 220
            AD+          E    +      I       L +S+  L    +      R GI LY
Sbjct: 115 FADEFDGFYEKE-KELVLKVSEEALKIHDFEVVHLQNSASFLRDGAFEKTTHQRLGIILY 173

Query: 221 GGTDKINKSHP-------MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI 273
           G      K +        ++  +T    I+ I     GE + Y       +D  + V  I
Sbjct: 174 GALPYDVKQYSVALPNLVIKNPITVYGEIVNIVDLKEGECIGYSNAYIAEKDKKVGVVNI 233

Query: 274 GYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
           GY DG                  G    I      I   + M   + +I++    ++GD 
Sbjct: 234 GYGDGILR-----------DRLRGNTCIINNKEKDIYATM-MSHLVVEISEKE--KIGDK 279

Query: 334 IQIF 337
           + ++
Sbjct: 280 VFLY 283


>gi|328676397|gb|AEB27267.1| alanine racemase [Francisella cf. novicida Fx1]
          Length = 231

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 21/245 (8%)

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           L  D G  R G    + +   +   N     ++ + SH+    +         +++  +L
Sbjct: 2   LDFDCGMGRFGFYKDDFIKHLYKLKNAGFSNIT-LFSHIPTGYNGFDKSKKY-IDKILSL 59

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
            +  K ++ + ++S   L   ++  +  RP  ++ G   +  +   ++  +  +A II I
Sbjct: 60  ATQTK-LKYTFSNSPVSLFSYDFQQEYIRPCSAILGYDQEPQE---IKFSLALKACIISI 115

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R    G+ +SY  +    RD+ +A+  IGYADG               +       IK  
Sbjct: 116 RDIPKGQYISYANEYFCDRDTTVAILNIGYADGL-----------GCKIHKDSYLIIKDT 164

Query: 306 MVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT 363
             PIL  I MD    DI+     +++ D I++FGP+ + L+  A     T  + L ++  
Sbjct: 165 KCPIL-AINMDYLYIDISAIKHQLKILDMIELFGPNSLSLEQHASMYNITKDEALTKLNA 223

Query: 364 -RYAK 367
            R  K
Sbjct: 224 LRVKK 228


>gi|46206247|ref|ZP_00210260.1| COG0787: Alanine racemase [Magnetospirillum magnetotacticum MS-1]
          Length = 281

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
             R  +DL A+++N  ++  L+ ++   AVVK +AYG G    A      G         
Sbjct: 54  PARAVVDLAAVRDNVRALADLAPSSEVMAVVKADAYGHGLVASALGALAGGATWLGTAQP 113

Query: 66  EEGVKLRLYTP---QARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVS 121
            E + LR       +AR+           + + + ++   +++        +   + G +
Sbjct: 114 GEALALRAAGVGPDRARVLTWLYPPGAPLRDLVEAHVDVSLAARWAVDEVVAAARAAGRT 173

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
               L VDTG  R G+   +  D        +
Sbjct: 174 ARVHLAVDTGLGRNGIMPADLPDVLDAVARAE 205


>gi|325846634|ref|ZP_08169549.1| alanine racemase, N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481392|gb|EGC84433.1| alanine racemase, N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 141

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 6/145 (4%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           M  N  L   +DL  + NN   +   S N++  AV+K + YGLG  +IA  + +  +   
Sbjct: 1   MQENYLL---VDLDKILNNIKLIKEKSINSKICAVLKADGYGLGALEIAKYINDQ-IDYI 56

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
            V   +E   LR       I +L  +   + K     N+   I  +      ++  S   
Sbjct: 57  AVAQFKEAKYLRDNGIDKPILILGYLPLDKYKECSSLNIDVGIYDLDYARKINE--SITG 114

Query: 121 SHPYALQVDTGFNRLGLSLQEALDF 145
           S    + +DTG  RLG    E    
Sbjct: 115 SINCHILLDTGHTRLGFRDFEIEKI 139


>gi|219820871|gb|ACL37556.1| alanine racemase-like protein [Listeria monocytogenes]
          Length = 153

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 8/157 (5%)

Query: 66  EEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +E + LR    Q   I VL         +    ++   +     L       +       
Sbjct: 1   DEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEDL----TLEAPLRI 56

Query: 125 ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+VD+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+
Sbjct: 57  HLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQ 116

Query: 184 TLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGIS 218
           T+++  K        A+S+  LL P   F   R GIS
Sbjct: 117 TILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGIS 153


>gi|219820857|gb|ACL37549.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820865|gb|ACL37553.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820875|gb|ACL37558.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820877|gb|ACL37559.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820879|gb|ACL37560.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820881|gb|ACL37561.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820893|gb|ACL37567.1| alanine racemase-like protein [Listeria monocytogenes]
          Length = 153

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 66  EEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +E + LR    Q   I VL         +    ++   +        + + ++   +   
Sbjct: 1   DEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEATLRI 56

Query: 125 ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+
Sbjct: 57  HLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQ 116

Query: 184 TLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGIS 218
           T+++  K        A+S+  LL P   F   R GIS
Sbjct: 117 TILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGIS 153


>gi|219820855|gb|ACL37548.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820859|gb|ACL37550.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820861|gb|ACL37551.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820863|gb|ACL37552.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820867|gb|ACL37554.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820869|gb|ACL37555.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820873|gb|ACL37557.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820883|gb|ACL37562.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820885|gb|ACL37563.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820887|gb|ACL37564.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820889|gb|ACL37565.1| alanine racemase-like protein [Listeria monocytogenes]
 gi|219820891|gb|ACL37566.1| alanine racemase-like protein [Listeria monocytogenes]
          Length = 153

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 66  EEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           +E + LR    Q   I VL         +    ++   +        + + ++   +   
Sbjct: 1   DEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEATLRI 56

Query: 125 ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+VD+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+
Sbjct: 57  HLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQ 116

Query: 184 TLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGIS 218
           T+++  K        A+S+  LL P   F   R GIS
Sbjct: 117 TILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGIS 153


>gi|30171573|gb|AAP20320.1| Dal [Listeria monocytogenes]
          Length = 151

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +  V     L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEDL----TLEVPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTVEEARQIETTITSDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|30171571|gb|AAP20319.1| Dal [Listeria monocytogenes]
 gi|30171575|gb|AAP20321.1| Dal [Listeria monocytogenes]
 gi|150372150|dbj|BAF65864.1| alanine racemase [Listeria monocytogenes]
 gi|150372160|dbj|BAF65869.1| alanine racemase [Listeria monocytogenes]
 gi|150372176|dbj|BAF65877.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEDL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|30171549|gb|AAP20308.1| Dal [Listeria monocytogenes]
          Length = 151

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEHL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|150372232|dbj|BAF65905.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEDL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +  EA        N    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTDEARRIETTIANDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|30171597|gb|AAP20332.1| Dal [Listeria monocytogenes]
          Length = 151

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +        + + ++        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTVEEARQIETTIASDSQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K       +A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKNRPTYVHVANSAASLLQPQIGFDAIRFGISMY 151


>gi|283770470|ref|ZP_06343362.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus H19]
 gi|283460617|gb|EFC07707.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus H19]
          Length = 219

 Score =  118 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 31/220 (14%)

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIE---ASLASSS-----GILLGP 206
           +S + +H   AD+      +V+  ++  ++     +G +       +S+     G +L P
Sbjct: 6   ISGLWTHFGYADEFDVSDYNVERLQWMEIVEALLSEGYQFDLIHAQNSASFYREGQILLP 65

Query: 207 NYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQK-KLT 263
             H    R GI+LYG      +N+   +Q+ +T +A +I +R+   G+   Y        
Sbjct: 66  --HHTHARVGIALYGSRPYSSLNQHDIVQS-LTVKAHVIQVREVQVGDYCGYSFAFEVTK 122

Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323
            ++ +AV  IGY DG   T                +  I G   PI   + M     ++ 
Sbjct: 123 NNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYPIR-ALMMSHMFVEVD 169

Query: 324 DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
              ++   D + ++  DI++D+        N + L  +  
Sbjct: 170 G--NVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNH 207


>gi|30171595|gb|AAP20331.1| Dal [Listeria monocytogenes]
          Length = 151

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEEL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLTKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|218673972|ref|ZP_03523641.1| putative alanine racemase [Rhizobium etli GR56]
          Length = 174

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 79/152 (51%), Gaps = 34/152 (22%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNA-----------------YGLGC 45
           ++  LRL +DLTAL  NW  M                                  YGLG 
Sbjct: 17  TSAGLRLTVDLTALTENWRDM-----------------ARRSGAARAAAVVKADAYGLGI 59

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS 105
           E    ALY AG +DFFV +V+EGV LRLY P ARIFVL GI PG E+  FD +L+PVISS
Sbjct: 60  EDAGEALYLAGARDFFVATVDEGVTLRLYAPDARIFVLSGIWPGTERRFFDNDLVPVISS 119

Query: 106 VPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137
             QL F+  +++    +P AL VDTGF   G 
Sbjct: 120 DEQLAFWMAVLADYGDYPCALHVDTGFTGWGC 151


>gi|30171577|gb|AAP20322.1| Dal [Listeria monocytogenes]
 gi|30171579|gb|AAP20323.1| Dal [Listeria monocytogenes]
 gi|30171581|gb|AAP20324.1| Dal [Listeria monocytogenes]
 gi|30171589|gb|AAP20328.1| Dal [Listeria monocytogenes]
 gi|30171591|gb|AAP20329.1| Dal [Listeria monocytogenes]
 gi|150372242|dbj|BAF65910.1| alanine racemase [Listeria monocytogenes]
 gi|150372244|dbj|BAF65911.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEEL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +  EA             QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|30171555|gb|AAP20311.1| Dal [Listeria monocytogenes]
 gi|30171557|gb|AAP20312.1| Dal [Listeria monocytogenes]
 gi|30171559|gb|AAP20313.1| Dal [Listeria monocytogenes]
 gi|30171567|gb|AAP20317.1| Dal [Listeria monocytogenes]
 gi|30171569|gb|AAP20318.1| Dal [Listeria monocytogenes]
 gi|30171583|gb|AAP20325.1| Dal [Listeria monocytogenes]
 gi|30171585|gb|AAP20326.1| Dal [Listeria monocytogenes]
 gi|30171587|gb|AAP20327.1| Dal [Listeria monocytogenes]
 gi|150372226|dbj|BAF65902.1| alanine racemase [Listeria monocytogenes]
 gi|150372228|dbj|BAF65903.1| alanine racemase [Listeria monocytogenes]
 gi|150372230|dbj|BAF65904.1| alanine racemase [Listeria monocytogenes]
 gi|150372234|dbj|BAF65906.1| alanine racemase [Listeria monocytogenes]
 gi|150372236|dbj|BAF65907.1| alanine racemase [Listeria monocytogenes]
 gi|150372238|dbj|BAF65908.1| alanine racemase [Listeria monocytogenes]
 gi|150372240|dbj|BAF65909.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEDL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +  EA             QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|50954714|ref|YP_062002.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951196|gb|AAT88897.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 236

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 31/175 (17%)

Query: 200 SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259
           +G LLGP            L+G   +    HP +  +     I+ +++  A   VSYG  
Sbjct: 89  AGALLGPE-----------LFGLDPR----HPSRLALRLVGEIVAVKRVAARRGVSYGYT 133

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319
            +  R S + + A+GYADG     S             G   +      + G+I MD  +
Sbjct: 134 YRTERPSTLVLVALGYADGLLRVASNR-----------GPVQVGTVRGRVSGRIAMDQFV 182

Query: 320 FDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
            DI D+ ++  GD + +FG     +  + D A A G     +  R+G R  + Y 
Sbjct: 183 VDIGDADTL-PGDPVVVFGDPGRGEPTVLDWADALGVAAPVITSRLGRRIERRYA 236



 Score = 57.0 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 9  LKIDLTALKNNW----HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            IDL A+  N       +   + + R       +AYG G   +A  L +AG   F V+ 
Sbjct: 11 AHIDLDAIVANAISSGRPLTDSTADLRV------DAYGHGLIPVARVLSSAGTGGFLVSR 64

Query: 65 VEEGVKLRLYTPQARIFV 82
          VE+   L       RI V
Sbjct: 65 VEDAATLADDGVPGRILV 82


>gi|30171543|gb|AAP20305.1| Dal [Listeria monocytogenes]
 gi|30171547|gb|AAP20307.1| Dal [Listeria monocytogenes]
 gi|30171561|gb|AAP20314.1| Dal [Listeria monocytogenes]
 gi|30171563|gb|AAP20315.1| Dal [Listeria monocytogenes]
 gi|30171565|gb|AAP20316.1| Dal [Listeria monocytogenes]
 gi|150372134|dbj|BAF65856.1| alanine racemase [Listeria monocytogenes]
 gi|150372136|dbj|BAF65857.1| alanine racemase [Listeria monocytogenes]
 gi|150372138|dbj|BAF65858.1| alanine racemase [Listeria monocytogenes]
 gi|150372142|dbj|BAF65860.1| alanine racemase [Listeria monocytogenes]
 gi|150372144|dbj|BAF65861.1| alanine racemase [Listeria monocytogenes]
 gi|150372146|dbj|BAF65862.1| alanine racemase [Listeria monocytogenes]
 gi|150372148|dbj|BAF65863.1| alanine racemase [Listeria monocytogenes]
 gi|150372152|dbj|BAF65865.1| alanine racemase [Listeria monocytogenes]
 gi|150372156|dbj|BAF65867.1| alanine racemase [Listeria monocytogenes]
 gi|150372158|dbj|BAF65868.1| alanine racemase [Listeria monocytogenes]
 gi|150372162|dbj|BAF65870.1| alanine racemase [Listeria monocytogenes]
 gi|150372168|dbj|BAF65873.1| alanine racemase [Listeria monocytogenes]
 gi|150372172|dbj|BAF65875.1| alanine racemase [Listeria monocytogenes]
 gi|150372174|dbj|BAF65876.1| alanine racemase [Listeria monocytogenes]
 gi|150372178|dbj|BAF65878.1| alanine racemase [Listeria monocytogenes]
 gi|150372182|dbj|BAF65880.1| alanine racemase [Listeria monocytogenes]
 gi|150372184|dbj|BAF65881.1| alanine racemase [Listeria monocytogenes]
 gi|150372186|dbj|BAF65882.1| alanine racemase [Listeria monocytogenes]
 gi|150372188|dbj|BAF65883.1| alanine racemase [Listeria monocytogenes]
 gi|150372190|dbj|BAF65884.1| alanine racemase [Listeria monocytogenes]
 gi|150372198|dbj|BAF65888.1| alanine racemase [Listeria monocytogenes]
 gi|150372200|dbj|BAF65889.1| alanine racemase [Listeria monocytogenes]
 gi|150372202|dbj|BAF65890.1| alanine racemase [Listeria monocytogenes]
 gi|150372204|dbj|BAF65891.1| alanine racemase [Listeria monocytogenes]
 gi|150372206|dbj|BAF65892.1| alanine racemase [Listeria monocytogenes]
 gi|150372208|dbj|BAF65893.1| alanine racemase [Listeria monocytogenes]
 gi|150372214|dbj|BAF65896.1| alanine racemase [Listeria monocytogenes]
 gi|150372218|dbj|BAF65898.1| alanine racemase [Listeria monocytogenes]
 gi|150372222|dbj|BAF65900.1| alanine racemase [Listeria monocytogenes]
 gi|150372224|dbj|BAF65901.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score =  117 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +        + + ++   +    L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEATLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|30171545|gb|AAP20306.1| Dal [Listeria monocytogenes]
 gi|30171551|gb|AAP20309.1| Dal [Listeria monocytogenes]
 gi|30171553|gb|AAP20310.1| Dal [Listeria monocytogenes]
 gi|150372132|dbj|BAF65855.1| alanine racemase [Listeria monocytogenes]
 gi|150372140|dbj|BAF65859.1| alanine racemase [Listeria monocytogenes]
 gi|150372154|dbj|BAF65866.1| alanine racemase [Listeria monocytogenes]
 gi|150372164|dbj|BAF65871.1| alanine racemase [Listeria monocytogenes]
 gi|150372166|dbj|BAF65872.1| alanine racemase [Listeria monocytogenes]
 gi|150372170|dbj|BAF65874.1| alanine racemase [Listeria monocytogenes]
 gi|150372180|dbj|BAF65879.1| alanine racemase [Listeria monocytogenes]
 gi|150372192|dbj|BAF65885.1| alanine racemase [Listeria monocytogenes]
 gi|150372194|dbj|BAF65886.1| alanine racemase [Listeria monocytogenes]
 gi|150372196|dbj|BAF65887.1| alanine racemase [Listeria monocytogenes]
 gi|150372212|dbj|BAF65895.1| alanine racemase [Listeria monocytogenes]
 gi|150372216|dbj|BAF65897.1| alanine racemase [Listeria monocytogenes]
 gi|150372220|dbj|BAF65899.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score =  117 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +        + + ++   +    L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEATLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMY 151


>gi|150372130|dbj|BAF65854.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +        + + ++   +    L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEATLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GI +Y
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIRFGILMY 151


>gi|33322502|gb|AAQ06978.1|AF496305_1 alanine racemase [Lactobacillus delbrueckii subsp. lactis]
          Length = 99

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 4  NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
          N    L I+L A+K N       L    +   VVK NAYG G  ++AP +  AG   F V
Sbjct: 5  NRPAALHINLAAIKENTRQAKDHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGADGFCV 64

Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN 98
            ++EG++LR       I V  G+ P +   +   N
Sbjct: 65 AMLDEGLELRRAQIVKPILV-XGLQPXEXAALAAVN 99


>gi|150372210|dbj|BAF65894.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score =  115 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +        + + ++   +    L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEATLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDANRFGISMY 151


>gi|150372128|dbj|BAF65853.1| alanine racemase [Listeria monocytogenes]
          Length = 151

 Score =  115 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +        + + ++   +    L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEATLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K        A+S+  LL P   F   R GIS+Y
Sbjct: 117 SLKKRPTYVHTANSAASLLQPQIGFDANRFGISMY 151


>gi|325526100|gb|EGD03760.1| alanine racemase [Burkholderia sp. TJI49]
          Length = 115

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 3/113 (2%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
             +   I   A+++N   +   +  +R  AV+K +AYG G E+I   L  A      +  
Sbjct: 3   RPIVAHIRPDAIRHNLDFIRRTAAQSRVWAVIKADAYGHGIERIYSGL--AAADGIALLD 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           + E V++R       + +L GI  P   +++    L   +    QL       
Sbjct: 61  LAEAVRVRELGWDKPVLLLEGIFEPTDVELVERHRLTVSVHCDEQLDMLIAAK 113


>gi|325526094|gb|EGD03755.1| alanine racemase [Burkholderia sp. TJI49]
          Length = 133

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            L++++G NRLG            + +        ++ H A A          QL+ F  
Sbjct: 1   QLKMNSGMNRLGYRPDAFRAAWERAASAPSIGRITLMMHFANA---DDGEVDWQLDTFDA 57

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240
             +   G E S+++S+ +L  P  H    RPG  LYG +           P+   +T  +
Sbjct: 58  ATAGIPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMPAMTLTS 116

Query: 241 RIILIRKALAGELVSYG 257
           +II ++     E V YG
Sbjct: 117 KIIGVQTLAPEETVGYG 133


>gi|118162176|gb|ABK64261.1| Dal [Listeria monocytogenes]
 gi|118162178|gb|ABK64262.1| Dal [Listeria monocytogenes]
          Length = 146

 Score =  112 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 8/149 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEDL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTR 214
             K        A+S+  LL P   F   R
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIR 145


>gi|30171593|gb|AAP20330.1| Dal [Listeria monocytogenes]
          Length = 151

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 8/155 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFRADWLENL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTVEEARQIETMIASDSQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTRPGISLY 220
             K       +A+ +  LL P   F  TR GIS+Y
Sbjct: 117 SLKNRPTYVHVANPAASLLQPQIGFDATRFGISMY 151


>gi|118162172|gb|ABK64259.1| Dal [Listeria monocytogenes]
          Length = 146

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 8/149 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFRADWLEDL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +++EA        +    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTR 214
             K        A+S+  LL P   F   R
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIR 145


>gi|71480600|gb|AAZ32225.1| Dal [Listeria monocytogenes]
 gi|118162118|gb|ABK64232.1| Dal [Listeria monocytogenes]
 gi|118162120|gb|ABK64233.1| Dal [Listeria monocytogenes]
 gi|118162130|gb|ABK64238.1| Dal [Listeria monocytogenes]
          Length = 146

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 8/149 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEEL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +  EA             QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTR 214
             K        A+S+  LL P   F   R
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIR 145


>gi|118162124|gb|ABK64235.1| Dal [Listeria monocytogenes]
 gi|118162126|gb|ABK64236.1| Dal [Listeria monocytogenes]
 gi|118162128|gb|ABK64237.1| Dal [Listeria monocytogenes]
 gi|118162132|gb|ABK64239.1| Dal [Listeria monocytogenes]
 gi|118162138|gb|ABK64242.1| Dal [Listeria monocytogenes]
 gi|118162140|gb|ABK64243.1| Dal [Listeria monocytogenes]
 gi|118162142|gb|ABK64244.1| Dal [Listeria monocytogenes]
 gi|118162146|gb|ABK64246.1| Dal [Listeria monocytogenes]
 gi|118162148|gb|ABK64247.1| Dal [Listeria monocytogenes]
 gi|118162152|gb|ABK64249.1| Dal [Listeria monocytogenes]
 gi|118162154|gb|ABK64250.1| Dal [Listeria monocytogenes]
 gi|118162166|gb|ABK64256.1| Dal [Listeria monocytogenes]
          Length = 146

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 8/149 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +     L       +        L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLEDL----TLEAPLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ +  EA             QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTR 214
             K        A+S+  LL P   F   R
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIR 145


>gi|293395856|ref|ZP_06640138.1| alanine racemase [Serratia odorifera DSM 4582]
 gi|291421793|gb|EFE95040.1| alanine racemase [Serratia odorifera DSM 4582]
          Length = 89

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 5  EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
            +   + L A  NN   +   +  A+  +VVK NAYG G +++  +L  A    F +  
Sbjct: 3  RPISATLHLAAFDNNLQVIRRFAPTAKIWSVVKANAYGHGIDRVWQSL--ANTDGFALLD 60

Query: 65 VEEGVKLRLYTPQARIFVLYGIH 87
          + E V LR    Q  I +L G  
Sbjct: 61 LAEAVMLRDAGWQGPILLLEGFS 83


>gi|118162122|gb|ABK64234.1| Dal [Listeria monocytogenes]
 gi|118162144|gb|ABK64245.1| Dal [Listeria monocytogenes]
 gi|118162158|gb|ABK64252.1| Dal [Listeria monocytogenes]
 gi|118162162|gb|ABK64254.1| Dal [Listeria monocytogenes]
 gi|118162182|gb|ABK64264.1| Dal [Listeria monocytogenes]
 gi|118162184|gb|ABK64265.1| Dal [Listeria monocytogenes]
          Length = 146

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +        + + ++   +    L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEATLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTR 214
             K        A+S+  LL P   F   R
Sbjct: 117 SLKNRPTYVHTANSAASLLQPQIGFDAIR 145


>gi|118162134|gb|ABK64240.1| Dal [Listeria monocytogenes]
 gi|118162136|gb|ABK64241.1| Dal [Listeria monocytogenes]
 gi|118162150|gb|ABK64248.1| Dal [Listeria monocytogenes]
 gi|118162156|gb|ABK64251.1| Dal [Listeria monocytogenes]
 gi|118162160|gb|ABK64253.1| Dal [Listeria monocytogenes]
 gi|118162164|gb|ABK64255.1| Dal [Listeria monocytogenes]
 gi|118162168|gb|ABK64257.1| Dal [Listeria monocytogenes]
 gi|118162170|gb|ABK64258.1| Dal [Listeria monocytogenes]
 gi|118162174|gb|ABK64260.1| Dal [Listeria monocytogenes]
 gi|118162180|gb|ABK64263.1| Dal [Listeria monocytogenes]
          Length = 146

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 70  KLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            LR    Q   I VL         +    ++   +        + + ++   +    L+V
Sbjct: 1   ALREAGFQDDFILVLGATRKEDANLAAKNHISLTVF----REDWLENLTLEATLRIHLKV 56

Query: 129 DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           D+G  RLG+ + +EA      S N    QL  I +H A AD   +     QL +F+T+++
Sbjct: 57  DSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQTILT 116

Query: 188 HYKGIE--ASLASSSGILLGPNYHFQLTR 214
             K        A+S+  LL P   F   R
Sbjct: 117 SLKKRPTYVHTANSAASLLQPQIGFDAIR 145


>gi|330813902|ref|YP_004358141.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486997|gb|AEA81402.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 154

 Score =  110 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLG-CEKIAPALYNAGVQDFFVTSVE 66
           ++ I+LT++KNN+  +      +  +A VK ++YGLG   KI  +L     ++FFV +V+
Sbjct: 7   QVSINLTSIKNNYLFLKRFCKPSVVSATVKASSYGLGEANKIVASLVKLKCKNFFVANVK 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E +K+R       IFVL G+   +E + F   L PV+++  Q   +++ +         +
Sbjct: 67  EALKIRKKFKSINIFVLNGLGIKEESVFFKNKLTPVLNTYSQFEKWTRYLKKNYQRNIMI 126

Query: 127 QVDTGFNRLGLSL 139
            VDTG NRLG   
Sbjct: 127 HVDTGMNRLGFQE 139


>gi|239943636|ref|ZP_04695573.1| putative alanine racemase [Streptomyces roseosporus NRRL 15998]
          Length = 92

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 32/82 (39%)

Query: 6  FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            R +IDL AL+ N   +   +  A+  AVVK + YG G    A A   AG       + 
Sbjct: 8  RARAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAARAAGATWLGTATP 67

Query: 66 EEGVKLRLYTPQARIFVLYGIH 87
           E + LR      RI       
Sbjct: 68 HEALALRAAGLDGRILCWLWTP 89


>gi|3288711|dbj|BAA31255.1| alanine racemase [Bacillus psychrosaccharolyticus]
          Length = 119

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 44  GCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103
           G  ++A     AG     V  ++E + LR     A I VL    P   +I    ++   +
Sbjct: 1   GDVEVAETAIQAGAGYLAVAFLDEALALRKKGITAPILVLGASRPEDAQIAARESITLTV 60

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIIS 162
                L      +  G      L+ D+G  R+G+  QE ++       K K   L  I +
Sbjct: 61  FQAGWLEAAQSFLE-GTVLTIHLKCDSGMGRIGIRKQEEMNEIERFLQKTKCFVLEGIFT 119


>gi|167463178|ref|ZP_02328267.1| alanine racemase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 81

 Score =  108 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 5  EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
              +++ L AL  N  +      ++ R  AVVK +AYG G   IA     +G     V 
Sbjct: 6  RPTWVEVSLDALSGNLQAFRQALPDSIRIMAVVKADAYGHGAASIAREAIASGADHLAVA 65

Query: 64 SVEEGVKLRLYTPQAR 79
           ++E ++LR     A 
Sbjct: 66 FLDEALQLREAGISAP 81


>gi|289674440|ref|ZP_06495330.1| alanine racemase [Pseudomonas syringae pv. syringae FF5]
          Length = 74

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
               I G    +LG+++MDM   D+TD     +G  ++++G  +   +VA  + T  Y++
Sbjct: 1   TPVQIDGQPSRLLGRVSMDMLCVDLTDVPQAGLGSRVELWGKQVLASEVAQRAETIPYEI 60

Query: 358 LVRIGTRYAKFYT 370
              +  R  + Y+
Sbjct: 61  FCNL-RRVPRIYS 72


>gi|323359912|ref|YP_004226308.1| alanine racemase [Microbacterium testaceum StLB037]
 gi|323276283|dbj|BAJ76428.1| alanine racemase [Microbacterium testaceum StLB037]
          Length = 211

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 16/139 (11%)

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
            V++   R +  +  L GE VSYG   +   D+ +A+   GYA G   +L    +     
Sbjct: 82  PVLSLRGRALGTKALLRGEGVSYGYTHRAPHDTRVALVTGGYAQGVVRSLGNAVT----- 136

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349
                   I G    I+G++ MD+ + D+ D+  I  G  +  FG        L++   A
Sbjct: 137 ------VAIDGRRHRIVGRVAMDVCVVDVGDA-DIARGAEVVFFGDPAEGHPSLEEWTDA 189

Query: 350 SGTTNYDLLVRIGTRYAKF 368
           +G +  +++  +G R  + 
Sbjct: 190 TGWSAAEIVAAVGVRAERR 208


>gi|297518400|ref|ZP_06936786.1| alanine racemase [Escherichia coli OP50]
          Length = 72

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358
              + G     +G ++MDM   D+T      +G  ++++G +IK+DDVA A+GT  Y+L+
Sbjct: 1   PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 60

Query: 359 VRIGTRYA 366
             +  R  
Sbjct: 61  CALALRVP 68


>gi|261885821|ref|ZP_06009860.1| alanine racemase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 154

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 24/174 (13%)

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELV 254
              +S+ I     +  +  R GI  +G + + ++S  ++ V++  A  I  R   AG+ V
Sbjct: 3   HSHNSAAIERTNGFDDEFVRAGIVQFGYS-QFDESLNLKKVLSLWADRISKRVLKAGQSV 61

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
            YGG     +D  IA   + Y DG     +G    H             G    ILGK++
Sbjct: 62  CYGGAFTAKKDINIATYDLRYGDGLLR-YNGKGDLH----------LANGEK--ILGKMS 108

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368
           MD            + GD I +F  D ++   A    T +YD+LV++ ++  + 
Sbjct: 109 MDSF-------SCADSGDQICVF-DDARV--WAKFFDTRSYDILVKLSSKIKRV 152


>gi|325128702|gb|EGC51567.1| alanine racemase, catabolic [Neisseria meningitidis N1568]
          Length = 89

 Score =  100 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 271 AAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV 330
            A GYADGYP                     + G +  ++G+++MDM   ++ D+    +
Sbjct: 2   IACGYADGYPRRA-----------PSNSPVAVDGKLTRVIGRVSMDMMTIEL-DASQEGL 49

Query: 331 GDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           G  ++++G  + ++ VA A+GT  Y+L+  I
Sbjct: 50  GHEVELWGDTVNINTVAEAAGTIPYELMCNI 80


>gi|242241683|ref|ZP_04796128.1| conserved hypothetical protein [Staphylococcus epidermidis W23144]
 gi|242234865|gb|EES37176.1| conserved hypothetical protein [Staphylococcus epidermidis W23144]
          Length = 80

 Score =  100 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVTSVEEGVKLRLYTPQARIFV 82
              + +AR  +VVK NAYG G E+I  A+   G    F + ++EE + LR    +  I +
Sbjct: 1   RQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALLNLEEAITLRERGWKGPILM 57

Query: 83  LYGIHPGQEKIIFD-TNLIPVIS 104
           L G    Q+  I+D   L   + 
Sbjct: 58  LEGFFHAQDLEIYDQHRLTTCVH 80


>gi|34764840|ref|ZP_00145214.1| Alanine racemase [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27885819|gb|EAA23187.1| Alanine racemase [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 288

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 107/296 (36%), Gaps = 30/296 (10%)

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL 139
           I V   +      +     + P I+S+  L   + L +       +L++D GF R G+  
Sbjct: 12  ILVFESLDDDYSFLEKYPQICPTINSIKDLK--NALANNIPIDRLSLKIDFGFGRNGIKA 69

Query: 140 QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG---IEASL 196
           +E  D   N       +   I SHL  A           + +F  +++           L
Sbjct: 70  EEV-DELKNLIKFNSLKFLGIFSHLFSATYTDG---LEVIRKFTEVVNKLGKDNFEMIHL 125

Query: 197 ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT-AEARIILIRKALAGELVS 255
            +++GI           R G+  YG  +     H ++ V T     +  +R     + V+
Sbjct: 126 QNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHDLKPVFTGLIGYVDSVRYVNELDYVA 185

Query: 256 YGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
           Y        +   IA   IGY DG+                      IK     ++ ++T
Sbjct: 186 YEDLDSISPKTKKIAKIKIGYGDGFLKA------------NNKTTCLIKKKEY-VISQVT 232

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT-RYAKFY 369
           MD T  ++ D   + VGD + ++    + +++   +G +  + L+ +   R  + +
Sbjct: 233 MDNTFIEVDD--RVNVGDKVHLY---HRPNEMKTRTGLSMLEALIALSPLRVKRIF 283


>gi|256027409|ref|ZP_05441243.1| alanine racemase, biosynthetic [Fusobacterium sp. D11]
          Length = 98

 Score = 99.0 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 23/112 (20%)

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
             DS  AV  IGYADG    LS            GG   I  +   I+G I MDMTM  I
Sbjct: 2   PADSTYAVLPIGYADGLKKYLS-----------KGGYVLINNHRCEIIGNICMDMTMIRI 50

Query: 323 TDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----YDLLVRIGTRYAKF 368
              +   +++GD + +   DI LD++            ++ +  IG R  + 
Sbjct: 51  PKEIENSVKIGDEVTVINADI-LDNLN-----IPELCVWEFMTGIGKRVKRI 96


>gi|218458070|ref|ZP_03498161.1| alanine racemase protein [Rhizobium etli Kim 5]
          Length = 73

 Score = 99.0 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDL 357
            + KG  +PI+G+++MD T  DIT      + +G  +++ GP+  LDDVA  +GT +Y++
Sbjct: 1   VYHKGIRLPIVGRVSMDSTTVDITALPEGALSLGSLVEVLGPNQTLDDVAGDAGTISYEI 60

Query: 358 LVRIGTRYAKFYT 370
           L  +G RY + Y 
Sbjct: 61  LTGLGDRYDRQYC 73


>gi|318081155|ref|ZP_07988487.1| hypothetical protein SSA3_31755 [Streptomyces sp. SA3_actF]
          Length = 67

 Score = 98.6 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 8  RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
          R +IDL AL+ N   +   +  A   AVVK +AYG G    A A   AG     V +  
Sbjct: 9  RAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPA 67


>gi|50843786|ref|YP_057013.1| putative alanine racemase [Propionibacterium acnes KPA171202]
 gi|50841388|gb|AAT84055.1| putative alanine racemase [Propionibacterium acnes KPA171202]
          Length = 342

 Score = 98.6 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 99/354 (27%), Gaps = 54/354 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+L ID    +N+  +            V K N YG G E +       G+    V   
Sbjct: 1   MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   +R Y     + VL    PG E      N   VI+++ +    + L     S    
Sbjct: 59  QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAALRDLAPSASIL 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++V+T  +R G+   E         +     L     HL                     
Sbjct: 119 VEVETSMHRHGVPADEVAAL-----DLDGFDLRGWTIHLPSGASLD------------EG 161

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHPMQTVVTA 238
               + ++    +S GI              I+L    D                     
Sbjct: 162 REMARIVKQHPLASRGIWFSHLSCDDY----IALSKELDVPVRMRVGTRLWLGDANAYRV 217

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              ++ +R       V Y    K   D  I V + G A G  L+           +  G 
Sbjct: 218 TGTVLDVRWLPKRTPVGYHR-VKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGA 276

Query: 299 KGFIKGYMVPILGKI-----------------TMDMTMFDI-TDSLSIEVGDYI 334
           +   +     ++G++                  M  ++  +        VGD +
Sbjct: 277 EALQQ-----MVGRVISPFTIAGKKAVFAEPPHMHSSLVFVGGPGEPTHVGDEV 325


>gi|289424666|ref|ZP_06426449.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|295131874|ref|YP_003582537.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|289155363|gb|EFD04045.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|291377092|gb|ADE00947.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|313765034|gb|EFS36398.1| alanine racemase protein [Propionibacterium acnes HL013PA1]
 gi|313771074|gb|EFS37040.1| alanine racemase protein [Propionibacterium acnes HL074PA1]
 gi|313792575|gb|EFS40661.1| alanine racemase protein [Propionibacterium acnes HL110PA1]
 gi|313803576|gb|EFS44758.1| alanine racemase protein [Propionibacterium acnes HL110PA2]
 gi|313811761|gb|EFS49475.1| alanine racemase protein [Propionibacterium acnes HL083PA1]
 gi|313815716|gb|EFS53430.1| alanine racemase protein [Propionibacterium acnes HL059PA1]
 gi|313829181|gb|EFS66895.1| alanine racemase protein [Propionibacterium acnes HL063PA2]
 gi|313832295|gb|EFS70009.1| alanine racemase protein [Propionibacterium acnes HL007PA1]
 gi|313832755|gb|EFS70469.1| alanine racemase protein [Propionibacterium acnes HL056PA1]
 gi|313839614|gb|EFS77328.1| alanine racemase protein [Propionibacterium acnes HL086PA1]
 gi|314916206|gb|EFS80037.1| alanine racemase protein [Propionibacterium acnes HL005PA4]
 gi|314917473|gb|EFS81304.1| alanine racemase protein [Propionibacterium acnes HL050PA1]
 gi|314921808|gb|EFS85639.1| alanine racemase protein [Propionibacterium acnes HL050PA3]
 gi|314930926|gb|EFS94757.1| alanine racemase protein [Propionibacterium acnes HL067PA1]
 gi|314955405|gb|EFS99810.1| alanine racemase protein [Propionibacterium acnes HL027PA1]
 gi|314959150|gb|EFT03252.1| alanine racemase protein [Propionibacterium acnes HL002PA1]
 gi|314963881|gb|EFT07981.1| alanine racemase protein [Propionibacterium acnes HL082PA1]
 gi|314969091|gb|EFT13189.1| alanine racemase protein [Propionibacterium acnes HL037PA1]
 gi|314975191|gb|EFT19286.1| alanine racemase protein [Propionibacterium acnes HL053PA1]
 gi|314977603|gb|EFT21698.1| alanine racemase protein [Propionibacterium acnes HL045PA1]
 gi|314985051|gb|EFT29143.1| alanine racemase protein [Propionibacterium acnes HL005PA1]
 gi|315078985|gb|EFT50997.1| alanine racemase protein [Propionibacterium acnes HL053PA2]
 gi|315081505|gb|EFT53481.1| alanine racemase protein [Propionibacterium acnes HL078PA1]
 gi|315097170|gb|EFT69146.1| alanine racemase protein [Propionibacterium acnes HL038PA1]
 gi|315099350|gb|EFT71326.1| alanine racemase protein [Propionibacterium acnes HL059PA2]
 gi|315102309|gb|EFT74285.1| alanine racemase protein [Propionibacterium acnes HL046PA1]
 gi|315109690|gb|EFT81666.1| alanine racemase protein [Propionibacterium acnes HL030PA2]
 gi|327332492|gb|EGE74227.1| putative alanine racemase [Propionibacterium acnes HL096PA2]
 gi|327446730|gb|EGE93384.1| alanine racemase protein [Propionibacterium acnes HL043PA2]
 gi|327448828|gb|EGE95482.1| alanine racemase protein [Propionibacterium acnes HL043PA1]
 gi|327454245|gb|EGF00900.1| alanine racemase protein [Propionibacterium acnes HL087PA3]
 gi|327456305|gb|EGF02960.1| alanine racemase protein [Propionibacterium acnes HL083PA2]
 gi|327457422|gb|EGF04077.1| alanine racemase protein [Propionibacterium acnes HL092PA1]
 gi|328756003|gb|EGF69619.1| alanine racemase protein [Propionibacterium acnes HL087PA1]
 gi|328759890|gb|EGF73480.1| putative alanine racemase [Propionibacterium acnes HL099PA1]
          Length = 342

 Score = 98.2 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 99/354 (27%), Gaps = 54/354 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+L ID    +N+  +            V K N YG G E +       G+    V   
Sbjct: 1   MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   +R Y     + VL    PG E      N   VI+++ +    + L     S    
Sbjct: 59  QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAALRDLAPSASIL 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++V+T  +R G+   E         +     L     HL                     
Sbjct: 119 VEVETSMHRHGVPADEVAAL-----DLDGFDLRGWTIHLPSGASLD------------EG 161

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHPMQTVVTA 238
               + ++    +S GI              I+L    D                     
Sbjct: 162 REMARIVKQHPLASRGIWFSHLSCDDY----IALSKKLDVPVRMRVGTRLWLGDANAYRV 217

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              ++ +R       V Y    K   D  I V + G A G  L+           +  G 
Sbjct: 218 TGTVLDVRWLPKRTPVGYHR-VKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGA 276

Query: 299 KGFIKGYMVPILGKI-----------------TMDMTMFDI-TDSLSIEVGDYI 334
           +   +     ++G++                  M  ++  +        VGD +
Sbjct: 277 EALQQ-----MVGRVISPFTIAGKKAVFAEPPHMHSSLVFVGGPGEPTHVGDEV 325


>gi|313814229|gb|EFS51943.1| alanine racemase protein [Propionibacterium acnes HL025PA1]
          Length = 342

 Score = 98.2 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 99/354 (27%), Gaps = 54/354 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+L ID    +N+  +            V K N YG G E +       G+    V   
Sbjct: 1   MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   +R Y     + VL    PG E      N   VI+++ +    + L     S    
Sbjct: 59  QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAALRDLAPSASIL 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++V+T  +R G+   E         +     L     HL                     
Sbjct: 119 VEVETSMHRHGVPADEVAAL-----DLDGFDLRGWTIHLPSGASLD------------EG 161

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHPMQTVVTA 238
               + ++    +S GI              I+L    D                     
Sbjct: 162 REMARIVKQHPLASRGIWFSHLSCDDY----IALSKKLDVPVRMRVGTRLWLGDANAYRV 217

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              ++ +R       V Y    K   D  I V + G A G  L+           +  G 
Sbjct: 218 TGTVLDVRWLPKRTPVGYHR-VKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGA 276

Query: 299 KGFIKGYMVPILGKI-----------------TMDMTMFDI-TDSLSIEVGDYI 334
           +   +     ++G++                  M  ++  +        VGD +
Sbjct: 277 EALQQ-----MVGRVISPFTIAGKKAVFAEPPHMHSSLIFVGGPGEPTHVGDEV 325


>gi|315107396|gb|EFT79372.1| alanine racemase protein [Propionibacterium acnes HL030PA1]
          Length = 342

 Score = 97.8 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 99/354 (27%), Gaps = 54/354 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+L ID    +N+  +            V K N YG G E +       G+    V   
Sbjct: 1   MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   +R Y     + VL    PG E      N   VI+++ +    + L     S    
Sbjct: 59  QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDVAALRDLAPSASIL 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++V+T  +R G+   E         +     L     HL                     
Sbjct: 119 VEVETSMHRHGVPADEVAAL-----DLDGFDLRGWTIHLPSGASLD------------EG 161

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHPMQTVVTA 238
               + ++    +S GI              I+L    D                     
Sbjct: 162 REMARIVKQHPLASRGIWFSHLSCDDY----IALSKELDVPVRMRVGTRLWLGDANAYRV 217

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              ++ +R       V Y    K   D  I V + G A G  L+           +  G 
Sbjct: 218 TGTVLDVRWLPKRTPVGYHR-VKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGA 276

Query: 299 KGFIKGYMVPILGKI-----------------TMDMTMFDI-TDSLSIEVGDYI 334
           +   +     ++G++                  M  ++  +        VGD +
Sbjct: 277 EALQQ-----MVGRVISPFTIAGKKAVFAEPPHMHSSLVFVGGPGEPTHVGDEV 325


>gi|328758968|gb|EGF72584.1| alanine racemase protein [Propionibacterium acnes HL025PA2]
          Length = 342

 Score = 97.8 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 99/354 (27%), Gaps = 54/354 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+L ID    +N+  +            V K N YG G E +       G+    V   
Sbjct: 1   MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   +R Y     + VL    PG E      N   VI+++ +    + L     S    
Sbjct: 59  QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAALRDLAPSASIL 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++V+T  +R G+   E         +     L     HL                     
Sbjct: 119 VEVETSMHRHGVPADEVAAL-----DLDGFDLRGWTIHLPSGASLD------------EG 161

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHPMQTVVTA 238
               + ++    +S GI              I+L    D                     
Sbjct: 162 REMARIVKQHPLASRGIWFSHLSCDDY----IALSKKLDVPVRMRVGTRLWLGDANAYRV 217

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              ++ +R       V Y    K   D  I V + G A G  L+           +  G 
Sbjct: 218 TGTVLDVRWLPKRTPVGYHR-VKTHADGYIVVVSGGTAHGVALSALISARSLRQWLIPGA 276

Query: 299 KGFIKGYMVPILGKI-----------------TMDMTMFDI-TDSLSIEVGDYI 334
           +   +     ++G++                  M  ++  +        VGD +
Sbjct: 277 EALQQ-----MVGRVISPFTIAGKKAVFAEPPHMHSSLVFVGGPGEPTHVGDEV 325


>gi|327334549|gb|EGE76260.1| putative alanine racemase [Propionibacterium acnes HL097PA1]
          Length = 342

 Score = 97.0 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 99/354 (27%), Gaps = 54/354 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+L ID    +N+  +            V K N YG G E +       G+    V   
Sbjct: 1   MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   +R Y     + VL    PG E      N   VI+++ +    + +     S    
Sbjct: 59  QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAAVRDLAPSASIL 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++V+T  +R G+   E         +     L     HL                     
Sbjct: 119 VEVETSMHRHGVPADEVAAL-----DLDGFDLRGWTIHLPSGASLD------------EG 161

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHPMQTVVTA 238
               + ++    +S GI              I+L    D                     
Sbjct: 162 REMARIVKQHPLASRGIWFSHLSCDDY----IALSKELDVPVRMRVGTRLWLGDANAYRV 217

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              ++ +R       V Y    K   D  I V + G A G  L+           +  G 
Sbjct: 218 TGTVLDVRWLPKRTPVGYHR-VKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGA 276

Query: 299 KGFIKGYMVPILGKI-----------------TMDMTMFDI-TDSLSIEVGDYI 334
           +   +     ++G++                  M  ++  +        VGD +
Sbjct: 277 EALQQ-----MVGRVISPFTIAGKKAVFAEPPHMHSSLVFVGGPGEPTHVGDEV 325


>gi|289427479|ref|ZP_06429192.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|289159409|gb|EFD07600.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|313806848|gb|EFS45346.1| alanine racemase protein [Propionibacterium acnes HL087PA2]
 gi|313817636|gb|EFS55350.1| alanine racemase protein [Propionibacterium acnes HL046PA2]
 gi|313821539|gb|EFS59253.1| alanine racemase protein [Propionibacterium acnes HL036PA1]
 gi|313824517|gb|EFS62231.1| alanine racemase protein [Propionibacterium acnes HL036PA2]
 gi|313826862|gb|EFS64576.1| alanine racemase protein [Propionibacterium acnes HL063PA1]
 gi|314926263|gb|EFS90094.1| alanine racemase protein [Propionibacterium acnes HL036PA3]
 gi|314961655|gb|EFT05756.1| alanine racemase protein [Propionibacterium acnes HL002PA2]
 gi|314979928|gb|EFT24022.1| alanine racemase protein [Propionibacterium acnes HL072PA2]
 gi|314987120|gb|EFT31212.1| alanine racemase protein [Propionibacterium acnes HL005PA2]
 gi|314990678|gb|EFT34769.1| alanine racemase protein [Propionibacterium acnes HL005PA3]
 gi|315083072|gb|EFT55048.1| alanine racemase protein [Propionibacterium acnes HL027PA2]
 gi|315086606|gb|EFT58582.1| alanine racemase protein [Propionibacterium acnes HL002PA3]
 gi|315088007|gb|EFT59983.1| alanine racemase protein [Propionibacterium acnes HL072PA1]
 gi|327334117|gb|EGE75832.1| putative alanine racemase [Propionibacterium acnes HL096PA3]
 gi|327444477|gb|EGE91131.1| alanine racemase protein [Propionibacterium acnes HL013PA2]
 gi|328757984|gb|EGF71600.1| alanine racemase protein [Propionibacterium acnes HL020PA1]
 gi|332676740|gb|AEE73556.1| putative alanine racemase [Propionibacterium acnes 266]
          Length = 342

 Score = 96.7 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 99/354 (27%), Gaps = 54/354 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+L ID    +N+  +            V K N YG G E +       G+    V   
Sbjct: 1   MLKLIIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   +R Y     + VL    PG E      N   VI+++ +    + L     S    
Sbjct: 59  QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAALRDLAPSASIL 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++V+T  +R G+   E         +     L     HL                     
Sbjct: 119 VEVETSMHRHGVPADEVAAL-----DLDGFDLRGWTIHLPSGASLD------------EG 161

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHPMQTVVTA 238
               + ++    +S GI              I+L    D                     
Sbjct: 162 REMARIVKQHPLASRGIWFSHLSCDDY----IALSKKLDVPVRMRVGTRLWLGDANAYRV 217

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              ++ +R       V Y    K   D  I V + G A G  L+           +  G 
Sbjct: 218 TGTVLDVRWLPKRTPVGYHR-VKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGA 276

Query: 299 KGFIKGYMVPILGKI-----------------TMDMTMFDI-TDSLSIEVGDYI 334
           +   +     ++G++                  M  ++  +        VGD +
Sbjct: 277 EALQQ-----MVGRVISPFTIAGKKAVFAEPPHMHSSLVFVGGPGEPTHVGDEV 325


>gi|317471393|ref|ZP_07930747.1| serine/alanine racemase [Anaerostipes sp. 3_2_56FAA]
 gi|316901144|gb|EFV23104.1| serine/alanine racemase [Anaerostipes sp. 3_2_56FAA]
          Length = 72

 Score = 95.5 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 26 LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78
          +  + +   V+K + YG G   +A AL   GV  F V  +EEG+ LR      
Sbjct: 1  MGPDTKIMPVIKADGYGHGAVPVAKALNKIGVDGFAVAIIEEGIALRKQGITK 53


>gi|282853032|ref|ZP_06262369.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|282582485|gb|EFB87865.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|314922669|gb|EFS86500.1| alanine racemase protein [Propionibacterium acnes HL001PA1]
 gi|314965753|gb|EFT09852.1| alanine racemase protein [Propionibacterium acnes HL082PA2]
 gi|314982895|gb|EFT26987.1| alanine racemase protein [Propionibacterium acnes HL110PA3]
 gi|315091202|gb|EFT63178.1| alanine racemase protein [Propionibacterium acnes HL110PA4]
 gi|315094435|gb|EFT66411.1| alanine racemase protein [Propionibacterium acnes HL060PA1]
 gi|315105155|gb|EFT77131.1| alanine racemase protein [Propionibacterium acnes HL050PA2]
 gi|327328930|gb|EGE70690.1| putative alanine racemase [Propionibacterium acnes HL103PA1]
          Length = 342

 Score = 94.3 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 99/354 (27%), Gaps = 54/354 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L+L ID    +N+  +            V K N YG G E +       G+    V   
Sbjct: 1   MLKLTIDAQRWRNHLTTFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +E   +R Y     + VL    PG E      N   VI+++ +    + +     S    
Sbjct: 59  QEVASVRQYGWDKDVIVLNPWRPGDEVATGLLNDPKVITTISRREDVAAVRDLAPSASIL 118

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++V+T  +R G+   E         +     L     HL                     
Sbjct: 119 VEVETSMHRHGVPADEVAAL-----DLDGFDLRGWTIHLPSGASLD------------EG 161

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NKSHPMQTVVTA 238
               + ++    +S GI              I+L    D                     
Sbjct: 162 REMARIVKQHPLASRGIWFSHLSCDDY----IALSKELDVPVRMRVGTRLWLGDANAYRV 217

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
              ++ +R       V Y    K   D  I V + G A G  L+           +  G 
Sbjct: 218 TGTVLDVRWLPKRTPVGYHR-VKTHTDGYIVVVSGGTAHGVALSAPISARSLRQWLIPGA 276

Query: 299 KGFIKGYMVPILGKI-----------------TMDMTMFDI-TDSLSIEVGDYI 334
           +   +     ++G++                  M  ++  +        VGD +
Sbjct: 277 EALQQ-----MVGRVISPFTIAGKKAVFAEPPHMHSSLVFVGGPGEPTHVGDEV 325


>gi|148999066|ref|ZP_01826497.1| alanine racemase [Streptococcus pneumoniae SP11-BS70]
 gi|147755105|gb|EDK62161.1| alanine racemase [Streptococcus pneumoniae SP11-BS70]
          Length = 70

 Score = 92.0 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358
            G   PI+G+++MD     +     +  G  + + G     +I    VA    T NY+++
Sbjct: 1   DGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTINYEVV 58

Query: 359 VRIGTRYAKFY 369
             +  R  + Y
Sbjct: 59  CLLSDRIPREY 69


>gi|229542368|ref|ZP_04431428.1| alanine racemase domain protein [Bacillus coagulans 36D1]
 gi|229326788|gb|EEN92463.1| alanine racemase domain protein [Bacillus coagulans 36D1]
          Length = 386

 Score = 91.6 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 117/348 (33%), Gaps = 44/348 (12%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTA--AVVK---DNAYGLGCEKIAPALYNAGVQDFF- 61
           R++I+L  +++N  ++  L G    +   VVK    +        IA AL  AG+     
Sbjct: 6   RVEINLEKIRHNAKTLKQLFGRKGISITGVVKGVTAD------LNIAGALVEAGITSLAD 59

Query: 62  --VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118
             + ++E   K+R    +A + +L      + +       I + + +  +    ++ +  
Sbjct: 60  SKIANIE---KMRKAGIKADLILLRSPGISEVEKTVRYADISMNTELDTIRALSAEAVRQ 116

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
             +H   L V+ G  R G+ L++A       F     +L+ I ++ AC          +Q
Sbjct: 117 QKTHKIILMVEMGDLREGILLKDAPAMIREIFTCPGIELAGIGTNFACFGGVLPTEQKMQ 176

Query: 179 -LERFRTLISHYKGIE---ASLASSS----GILLGPNYHFQLTRPGISLYGGTDKINK-- 228
              RF   +     ++    S  +S+     +           R G S+  G +      
Sbjct: 177 TFSRFVQAMQELFSLKLPYVSGGNSANYNWAVKTKDAEAVNNVRLGESILLGRETSGGHI 236

Query: 229 -SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD-GYPLTLSGL 286
                Q      A +I  +   +    + G      + + I        D G        
Sbjct: 237 IPSLYQDAFCFVAEVIESKIKPSVPYGTIGKNAFGEQVTFI--------DRGNRRRTIIS 288

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
              H   V              I+G  + D  + D  D++ +  GD +
Sbjct: 289 AGRHDVLVSGLTPV----RPFHIIGS-SSDHIILDTKDAVLV-PGDEV 330


>gi|309802733|ref|ZP_07696837.1| conserved domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|308220797|gb|EFO77105.1| conserved domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 105

 Score = 91.6 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 305 YMVPILGKITMDMTMFDI---TDSLSIEVGDYIQIFGP-------DIKLDDVALASGTTN 354
            +  + G++ MD  + D+    D+L I  GD +++FGP       +   DD   A+ T +
Sbjct: 10  RLYRVSGRVCMDQFILDLHGSADALGIHEGDTVELFGPGRGEDYAEPTADDWGRAADTIS 69

Query: 355 YDLLVRIGTRYAKFY 369
           Y++   +  R  + Y
Sbjct: 70  YEIFTCLRNRIPRLY 84


>gi|320546815|ref|ZP_08041122.1| hypothetical protein HMPREF0819_0528 [Streptococcus equinus ATCC
           9812]
 gi|320448532|gb|EFW89268.1| hypothetical protein HMPREF0819_0528 [Streptococcus equinus ATCC
           9812]
          Length = 80

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 35  VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           +VK NAYG G  ++A  + +  V  F V++++E ++L+       I +L  I P +  + 
Sbjct: 1   MVKANAYGHGAVQVAQHIRSL-VDGFCVSNIDEAIELQESDITEVILILGIIMPEEIVLA 59

Query: 95  FDTNLIPVISSVPQLTFYSK 114
               +   + S+  +     
Sbjct: 60  KKYQITVTVDSMEWVNLAIA 79


>gi|28493462|ref|NP_787623.1| alanine racemase-like protein [Tropheryma whipplei str. Twist]
 gi|28476503|gb|AAO44592.1| alanine racemase-like protein [Tropheryma whipplei str. Twist]
          Length = 224

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 25/154 (16%)

Query: 219 LYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
           +YG    +  +   +  +  E+ ++  +K  AG  VSY    +   +  +A+  IGYADG
Sbjct: 91  IYG----LGDNTECKAALHLESCVVTCKKLPAGAGVSYCHTYRTQSEENVALIGIGYADG 146

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            P                 G   IK    PI+G+I MD  +  +T   S + G  + ++G
Sbjct: 147 LPFQAQ-------------GSVEIKKRKYPIIGRIAMDYMVAKVTPD-SYKHGTRVTVWG 192

Query: 339 PDIKLDDVALASGTTNYDLLV---RIGTRYAKFY 369
                    L++G      L     +  R  K +
Sbjct: 193 ES-GAKTWGLSAGIDP---LCLTAGLAYRVEKRW 222



 Score = 40.4 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 38 DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARI 80
           +A+G G  KIA  LY+ GV+  FV    E + L        +
Sbjct: 37 ADAFGHGLVKIAYTLYSTGVRKCFVRKAHEKIFLEEIGFTVDV 79


>gi|307265382|ref|ZP_07546939.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919666|gb|EFN49883.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 373

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 118/354 (33%), Gaps = 62/354 (17%)

Query: 11  IDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +DL  L++N   M             +VK          IA    N G + F V +++E 
Sbjct: 14  VDLDKLESNIKEMADTCRKNGKELWPMVKT----HKSTAIAKMQQNYGSKGFLVGTIDEA 69

Query: 69  VKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMS----CGVSH 122
            KL     +  I + Y +   +  E+I+       VI S   +   +K+       G+S 
Sbjct: 70  EKLTENGFK-EIMIAYPVASKENIERILTLAQKAHVILSFDGVEAAAKVEETCNRIGLSM 128

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            Y + +D+G +R G+  ++ L+      +    +   I +H      P        +E  
Sbjct: 129 DYLIIIDSGLHRFGVVPEKVLELAEKLKSFTHLKFKGIATH------PGHTYAKRNIEEI 182

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242
           + +         + A+   IL    Y   +        G T                ++I
Sbjct: 183 KAVAQEEVEALTTAAN---ILKKEGYSVDIVAT-----GSTPTA--------AFVVSSKI 226

Query: 243 ILIRKALAGELVSYGGQKKLTR------------DSLIA-------VAAIGYADGYPLTL 283
           I I     G  V Y   +                 ++IA       +   G         
Sbjct: 227 INI--LRPGNYVFYDAIQVALGVSPLEKCALTVLATVIAHPKEDLFIIDAG------SKC 278

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337
            GLD        + G G +KGY   ++  ++ ++    +T    I+VGD I+I 
Sbjct: 279 FGLDKGAHGVSLINGYGIVKGYPELVVESLSEEVGKVKVTAPTDIKVGDKIEII 332


>gi|28572426|ref|NP_789206.1| alanine racemase II [Tropheryma whipplei TW08/27]
 gi|28410557|emb|CAD66943.1| alanine racemase II [Tropheryma whipplei TW08/27]
          Length = 220

 Score = 90.9 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 25/154 (16%)

Query: 219 LYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
           +YG    +  +   +  +  E+ ++  +K  AG  VSY    +   +  +A+  IGYADG
Sbjct: 87  IYG----LGDNTECKAALHLESCVVTCKKLPAGAGVSYCHTYRTQSEENVALIGIGYADG 142

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
            P                 G   IK    PI+G+I MD  +  +T   S + G  + ++G
Sbjct: 143 LPFQAQ-------------GSVEIKKRKYPIIGRIAMDYMVAKVTPD-SYKHGTRVTVWG 188

Query: 339 PDIKLDDVALASGTTNYDLLV---RIGTRYAKFY 369
                    L++G      L     +  R  K +
Sbjct: 189 ES-GAKTWGLSAGIDP---LCLTAGLAYRVEKRW 218



 Score = 40.0 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 38 DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARI 80
           +A+G G  KIA  LY+ GV+  FV    E + L        +
Sbjct: 33 ADAFGHGLVKIAYTLYSTGVRKCFVRKAHEKIFLEEIGFTVDV 75


>gi|260890258|ref|ZP_05901521.1| alanine racemase [Leptotrichia hofstadii F0254]
 gi|260859878|gb|EEX74378.1| alanine racemase [Leptotrichia hofstadii F0254]
          Length = 77

 Score = 90.1 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 9  LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
          L+I+   LK N   + +++ N     V+KDNAYGLG E + P L       F V  +EE 
Sbjct: 5  LEINRENLKRNLEKIRSINKN--IVCVIKDNAYGLGIENVFPILLENNCNYFAVAYIEEA 62

Query: 69 VKLRL 73
          +K+R 
Sbjct: 63 IKIRK 67


>gi|289828986|ref|ZP_06546686.1| D-amino acid dehydrogenase-Alanine racemase fusion protein
          [Salmonella enterica subsp. enterica serovar Typhi str.
          E98-3139]
          Length = 71

 Score = 87.4 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 5  EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63
            ++  +DL  +K N   +   +  AR  +VVK NAYG G E++  AL   G    F + 
Sbjct: 3  RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59

Query: 64 SVEEGVKLRLYT 75
          ++EE + LR   
Sbjct: 60 NLEEAITLRERG 71


>gi|212639867|ref|YP_002316387.1| putative amino acid racemase [Anoxybacillus flavithermus WK1]
 gi|212561347|gb|ACJ34402.1| Predicted amino acid racemase [Anoxybacillus flavithermus WK1]
          Length = 366

 Score = 86.3 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 118/357 (33%), Gaps = 62/357 (17%)

Query: 8   RLKIDLTALKNNWHSMNALSGNA--RTAAVVKD-NAYGLGCEKIAPALYNAGVQDFFVTS 64
           R++IDL  +++N  ++         +  AVVK  N    G  +IA  L ++GV     T 
Sbjct: 4   RVEIDLRKIRHNAKTLKKWCEEKGIQMTAVVKGVN----GDVEIARTLVDSGVTSLADTK 59

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123
           +E   KL+     A   ++      +   +     +   S +  +    ++ +    +H 
Sbjct: 60  IERIAKLKSTHIPATYMLIRTPALSEVSEVVRHVDVSAQSEIDVVRAISAEAVKQNKTHA 119

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
             + V+ G  R G+  ++   F          QL+ I ++ AC       + + Q  + R
Sbjct: 120 IIVMVEMGDLREGVMPEDVPAFIEQVRQLPNIQLAGIGANFAC---FGGIIPTEQ--KMR 174

Query: 184 TLISHYKGIE---------ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSH 230
            L S  K I+          S  +S+                 R G +++ G + I  + 
Sbjct: 175 ELSSLAKHIQKEYTLFLPYVSGGNSANYYWLKQTADVGCINHLRLGEAIFLGRETIRGAA 234

Query: 231 P---MQTVVTAEARIILIRKALAGELVSYGG----------QKKLTRDSLIAVAAIGYAD 277
                Q      A +I ++       V YG                     A+  IG   
Sbjct: 235 IPGLYQDAFCLVAEVIEVKTKP---SVPYGVQSRNAFGEAPTFPERGMMKRAIVGIG--- 288

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
                       +   +       I G         + D  + D T +  I+VGDYI
Sbjct: 289 --------RQDVNVNGLTPLAPVDIIGS--------SSDHMIIDATRT-DIQVGDYI 328


>gi|54303507|ref|YP_133500.1| amino acid racemase [Photobacterium profundum SS9]
 gi|46916937|emb|CAG23700.1| hypothetical amino acid racemase [Photobacterium profundum SS9]
          Length = 361

 Score = 85.9 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 114/358 (31%), Gaps = 46/358 (12%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58
           M +    RL+IDL  + +N H++             V+K +   LG  +IA  L +AGV 
Sbjct: 1   MRTISMPRLEIDLDKIYHNAHTLVDRLACRGISVTGVMKAS---LGSPEIARVLLSAGVN 57

Query: 59  DFFVTSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
               + +E    +R     A  I +   +    ++I+   +L             S   +
Sbjct: 58  MIGDSRIENIETMRRAGVAAPMILIRSPMLSQVDRIVTHADLSLNTELDVISKLSSAAKA 117

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVN 175
            G  H   L V+ G  R G+   +  D            L  I ++LAC     P +   
Sbjct: 118 AGRKHGVVLMVELGDLREGIMPADLEDTVRQVLRLPNIALRGIGANLACHSGVSPDTRNM 177

Query: 176 SVQLERFRTLISHYKGIEASLAS--SSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPM 232
           S  L      I    G+   + S  +S  L          R      G +  +  +    
Sbjct: 178 SE-LSALVDSIEAVFGLTLDIVSGGNSANLDWALGGADAGRINNLRLGESVLLGCEPLHR 236

Query: 233 QT-------VVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-------AVAAIGYADG 278
           Q         +T  A +I  +   +             +  +        A+ AIGY D 
Sbjct: 237 QPIDGLYTDAITLIAEVIESKVKPSRPWGEIAQTAFGEKPLVTDRGNISQAILAIGYQDV 296

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
            P  L G                     + I+G  + D  + D T    + VG  IQ 
Sbjct: 297 DPSGLQGPPG------------------IEIIGA-SSDHLITD-TGHCHLSVGAEIQF 334


>gi|291084576|ref|ZP_06539348.2| D-amino acid dehydrogenase-Alanine racemase fusion protein
          [Salmonella enterica subsp. enterica serovar Typhi str.
          AG3]
          Length = 61

 Score = 85.1 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 20 WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVTSVEEGVKLRLYTPQA 78
             +   +  AR  +VVK NAYG G E++  AL   G    F + ++EE + LR    + 
Sbjct: 1  MAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNLEEAITLRERGWKG 57

Query: 79 RIFV 82
           I +
Sbjct: 58 PILM 61


>gi|242399549|ref|YP_002994974.1| Alanine racemase, N-terminal [Thermococcus sibiricus MM 739]
 gi|242265943|gb|ACS90625.1| Alanine racemase, N-terminal [Thermococcus sibiricus MM 739]
          Length = 354

 Score = 84.3 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 133/356 (37%), Gaps = 59/356 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYG----------LGCEKIAPALYNAGVQ 58
           L+I+L+A+++N   +     +           YG           G  K+A A+   GVQ
Sbjct: 5   LEINLSAIEDNVRRVVEFCTS-----------YGINVVGITKGACGEPKVAKAILRGGVQ 53

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MS 117
               + ++  +K++    +A   ++      + + +       + S +  L   SK  + 
Sbjct: 54  ILGDSRIQNIIKMKESNVKAEFMLIRSPMISEVESVVKYAEYSLNSELKVLEQLSKASLE 113

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNS 176
            G  H   + VD G  R G+   E + F   +   K  ++  + ++L C      +  N 
Sbjct: 114 YGRRHKAIIMVDVGDRREGIMPNEFVPFLKEAKKLKGVEIVGVGTNLGCFGGVLPTPRNH 173

Query: 177 VQLERFRTLISHYKGIEASLASSSGI-----LLGPNYHFQLTRPGIS---LYGGTDKINK 228
             L++    + +  GIE  + SS G      L      + + +  I    L G     N+
Sbjct: 174 EMLKKLTEKVKYILGIENPIISSGGTVVLNLLEREQSSYGINQLRIGEGILLGTDSTGNR 233

Query: 229 SHPM--QTVVTAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGY 279
           + P   Q   T +A I+ ++       G    +        +       A+ A+G  D  
Sbjct: 234 TIPWLRQDTFTLKAEIVEVKWKPSLPEGPVGKDAFGNTPIFEDLGIRKRAILALGKQD-- 291

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYI 334
              +SGL   +S    LGG               + D T+ DIT+S + ++VGD +
Sbjct: 292 -TEISGLFPLYSGVKVLGG---------------SSDHTIIDITESKVPLDVGDIV 331


>gi|224824431|ref|ZP_03697538.1| alanine racemase domain protein [Lutiella nitroferrum 2002]
 gi|224602924|gb|EEG09100.1| alanine racemase domain protein [Lutiella nitroferrum 2002]
          Length = 628

 Score = 83.6 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 110/342 (32%), Gaps = 28/342 (8%)

Query: 8   RLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           R+ IDL  ++ N   +     +   + A V K  A   G  ++A A+   GV     + +
Sbjct: 5   RIIIDLDRIEENTRVLVEACRTQGIQVAGVTKS-A--CGSPRVARAMVRGGVAQIADSRL 61

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
           +  V+LR       + ++    P + + +     I + S +  L   S+     GV H  
Sbjct: 62  DNIVRLRRDGISVPLMLIRAPAPAEAEQVVRHADISLNSELQTLQALSRAAVQLGVVHDV 121

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFR 183
            L +D G  R G+   E +D+          +L  + ++LAC       V+++  L    
Sbjct: 122 VLMIDLGDLREGILPHETMDYVEQILALAGVRLIGVGTNLACVGGIQPTVDNLSNLAYLA 181

Query: 184 TLISHYKGIEASLASSSGILLGPNYHF-------QLTRPGISLYGGTDKINKSHPMQT-- 234
             I     IE  + S       P              R G S+             +   
Sbjct: 182 DEIRRRHAIELPIVSGGNTFSLPLLEQGQLPAGINHLRLGASIMLAESPTPPGLYGKLHK 241

Query: 235 -VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293
              T  A +I  +   +           L+ +       +   DG       L       
Sbjct: 242 DAYTLTADVIEAKTKPS-------RPYGLSGEDAFGRRPV--FDGEDRPARRLILAMGRE 292

Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI-EVGDYI 334
                        + +LG  + D  + D + + +   +GD +
Sbjct: 293 DIAPEGLRPTDERLQVLGA-SSDHLIVDASAAEAAYRLGDSV 333


>gi|330952100|gb|EGH52360.1| alanine racemase [Pseudomonas syringae Cit 7]
          Length = 58

 Score = 83.2 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 5  EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             R  IDL AL++N+      SG  +  AVVK +AYG G  ++A AL +     F V 
Sbjct: 2  RPARAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQALESQ-ADGFAVA 58


>gi|169836938|ref|ZP_02870126.1| alanine racemase [candidate division TM7 single-cell isolate TM7a]
          Length = 56

 Score = 82.8 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 319 MFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           M  + D L    + GD ++ FG +I + +VA   GT +Y++L  I  R  + Y 
Sbjct: 1   MILLPDELKDEAKKGDVVEFFGENISVVEVAELCGTISYEILCGISQRVPRIYV 54


>gi|50059382|gb|AAT69419.1| alanine racemase [Borrelia turicatae]
          Length = 95

 Score = 82.8 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 1  MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
          M  N+   + I+L  L+ N  ++          A +K +AYG G  +    L   G+  F
Sbjct: 1  MIKNK--EIIINLKNLEYNLTAIKNHIQKRELVATLKADAYGHGLIQTFKFLKEKGINYF 58

Query: 61 FVTSVEEGVKLRLYTPQARIFV 82
           +  ++E +K++    +A + +
Sbjct: 59 GIFWIDEALKIKKIDKRANVLL 80


>gi|254976416|ref|ZP_05272888.1| putative amino acid racemase [Clostridium difficile QCD-66c26]
 gi|255093801|ref|ZP_05323279.1| putative amino acid racemase [Clostridium difficile CIP 107932]
 gi|255315553|ref|ZP_05357136.1| putative amino acid racemase [Clostridium difficile QCD-76w55]
 gi|255518216|ref|ZP_05385892.1| putative amino acid racemase [Clostridium difficile QCD-97b34]
 gi|255651332|ref|ZP_05398234.1| putative amino acid racemase [Clostridium difficile QCD-37x79]
 gi|260684394|ref|YP_003215679.1| putative amino acid racemase [Clostridium difficile CD196]
 gi|260688053|ref|YP_003219187.1| putative amino acid racemase [Clostridium difficile R20291]
 gi|306521163|ref|ZP_07407510.1| putative amino acid racemase [Clostridium difficile QCD-32g58]
 gi|260210557|emb|CBA65100.1| putative amino acid racemase [Clostridium difficile CD196]
 gi|260214070|emb|CBE06245.1| putative amino acid racemase [Clostridium difficile R20291]
          Length = 370

 Score = 82.0 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 83/254 (32%), Gaps = 26/254 (10%)

Query: 12  DLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           DL  L+ N   +  +    N +   ++K          IA    NAG   F V +++EG 
Sbjct: 14  DLDQLEKNIDKIQQICTNNNKQLWPMLKT----HKSTYIARLQKNAGASGFLVGTLDEGE 69

Query: 70  KLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHP 123
            L     +  I + Y             +    NLI    ++     YS+      +   
Sbjct: 70  ALIKAGFE-DIMLAYPYMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKIECK 128

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH----LACADDPSSHVNSVQL 179
             + VD G +R G+  ++ ++        +  ++  I SH      C+         VQ 
Sbjct: 129 LLIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPEGVPDVCVQE 188

Query: 180 E-----RFRTLISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINKSH-- 230
           +      ++ L  +   IE   + S+  +            RPG  +Y    +I      
Sbjct: 189 DSSMEKAYKALTDNGFNIEIVASGSTPTVEAEAASKTITAVRPGNYVYYDAIQIGLGCAT 248

Query: 231 PMQTVVTAEARIIL 244
                +T    +I 
Sbjct: 249 EDMCALTVVCTVIS 262


>gi|213416540|ref|ZP_03349684.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 68

 Score = 81.6 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
              LG++ MD  M D +  +    GD ++  G    L++VA A  T  Y+++ R+G R+ 
Sbjct: 2   CRSLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFR 60

Query: 367 KF 368
           + 
Sbjct: 61  RI 62


>gi|238927301|ref|ZP_04659061.1| possible alanine racemase [Selenomonas flueggei ATCC 43531]
 gi|238884888|gb|EEQ48526.1| possible alanine racemase [Selenomonas flueggei ATCC 43531]
          Length = 61

 Score = 81.6 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 4  NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAG 56
          N     +IDL AL +N+  + +     A+  AVVK +AYG G    A    + G
Sbjct: 3  NRAAWAEIDLGALAHNYREIRSRIQKRAKLCAVVKADAYGHGAIAAARVALDEG 56


>gi|255656805|ref|ZP_05402214.1| putative amino acid racemase [Clostridium difficile QCD-23m63]
 gi|296452364|ref|ZP_06894066.1| serine racemase [Clostridium difficile NAP08]
 gi|296877713|ref|ZP_06901741.1| serine racemase [Clostridium difficile NAP07]
 gi|296258793|gb|EFH05686.1| serine racemase [Clostridium difficile NAP08]
 gi|296431335|gb|EFH17154.1| serine racemase [Clostridium difficile NAP07]
          Length = 370

 Score = 81.2 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 83/254 (32%), Gaps = 26/254 (10%)

Query: 12  DLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           DL  L+ N   +  +    N +   ++K          IA    NAG   F V +++EG 
Sbjct: 14  DLDQLEKNIDKIQQICTNNNKQLWPMLKT----HKSTYIARLQKNAGASGFLVGTLDEGE 69

Query: 70  KLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHP 123
            L     +  I + Y             +    NLI    ++     YS+      +   
Sbjct: 70  ALIKAGFE-DIMLAYPYMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKLECK 128

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH----LACADDPSSHVNSVQL 179
             + VD G +R G+  ++ ++        +  ++  I SH      C+         VQ 
Sbjct: 129 LLIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPEGVPDVCVQE 188

Query: 180 E-----RFRTLISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINKSH-- 230
           +      ++ L  +   IE   + S+  +            RPG  +Y    +I      
Sbjct: 189 DSSMEKAYKALTDNGFNIEIVASGSTPTVEAEAVSKTITAVRPGNYVYYDAIQIGLGCAT 248

Query: 231 PMQTVVTAEARIIL 244
                +T    +I 
Sbjct: 249 EDMCALTVVCTVIS 262


>gi|315079986|gb|EFT51962.1| hypothetical protein HMPREF9569_02523 [Propionibacterium acnes
           HL078PA1]
          Length = 60

 Score = 81.2 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 317 MTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
             M D+    ++ VGD + + G      +  DD+A   GT +Y++   I  R  +++ 
Sbjct: 1   QFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISYEITCAISKRVDRYWV 58


>gi|126700435|ref|YP_001089332.1| putative amino acid racemase [Clostridium difficile 630]
 gi|115251872|emb|CAJ69707.1| putative amino acid racemase [Clostridium difficile]
          Length = 370

 Score = 80.9 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 83/254 (32%), Gaps = 26/254 (10%)

Query: 12  DLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           DL  L+ N   +  +    N +   ++K          IA    NAG   F V +++EG 
Sbjct: 14  DLDQLEKNIDKIQQICTNNNKQLWPMLKT----HKSTYIARLQKNAGASGFLVGTLDEGE 69

Query: 70  KLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHP 123
            L     +  I + Y             +    NLI    ++     YS+      +   
Sbjct: 70  ALIKAGFE-DIMLAYPYMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKIECK 128

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH----LACADDPSSHVNSVQL 179
             + VD G +R G+  ++ ++        +  ++  I SH      C+         VQ 
Sbjct: 129 LLIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPEGVPDVCVQE 188

Query: 180 E-----RFRTLISHYKGIEASLASSSGILLGPNY--HFQLTRPGISLYGGTDKINKSH-- 230
           +      ++ L  +   IE   + S+  +            RPG  +Y    +I      
Sbjct: 189 DSSMEKAYKALTDNGFNIEIVASGSTPTVESEAACKTITAVRPGNYVYYDAIQIGLGCAT 248

Query: 231 PMQTVVTAEARIIL 244
                +T    +I 
Sbjct: 249 EDMCALTVVCTVIS 262


>gi|223042373|ref|ZP_03612422.1| alanine racemase, N- domain family [Staphylococcus capitis SK14]
 gi|222444036|gb|EEE50132.1| alanine racemase, N- domain family [Staphylococcus capitis SK14]
          Length = 351

 Score = 80.9 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 127/348 (36%), Gaps = 55/348 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
             R+K++L+ ++ N   +  L    +     VVK        G E+I   + + G+  F 
Sbjct: 1   MARIKVNLSKIQYNAKVLQTLLERRQIHFTPVVKCVA-----GDERIVSTIKSLGITHFA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII--FDTNLIPVISSVPQLTFYSKLMSCG 119
            + ++   +LR        F L       E +I     ++   + ++ QL   +K M   
Sbjct: 56  ESRIDNIERLRDLNIT---FTLLRPTTEFETMISTVKLSIQTELDTIKQLNVIAKRM--N 110

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ- 178
           V H   L VD    R G+   + LD+     +    QL  +  +  C    +   N V  
Sbjct: 111 VKHQIMLMVDWKDGREGVLTYDVLDYIKEIMSMSHIQLVGLAFNFMCFKSKAPEENDVFM 170

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHF------QLTRPGISLY-GGTDKINKSHP 231
           + +F + +    G +  + S     + P   +         R G +L+ G     N+   
Sbjct: 171 INKFISAVEKEIGYKFKIISGGNSSMLPQTMYNDLGKINELRIGEALFRGIDTTTNEPIA 230

Query: 232 --MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLTLSGLDS 288
              Q  +  EA II I+              ++T  S + A+  IGY D +   +  + +
Sbjct: 231 SLYQDAIVLEAEIIEIK----------PRINQVTHQSYLQAIVDIGYLDTFTDGIKPIAN 280

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           +                 + ++G  + D  M D+ +    ++GD IQ 
Sbjct: 281 D-----------------LKMVGA-SSDHLMIDLNNQDHYQIGDRIQF 310


>gi|314934244|ref|ZP_07841603.1| putative amino acid racemase [Staphylococcus caprae C87]
 gi|313652174|gb|EFS15937.1| putative amino acid racemase [Staphylococcus caprae C87]
          Length = 351

 Score = 80.5 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 127/348 (36%), Gaps = 55/348 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
             R+K++L+ ++ N   +  L    +     VVK        G E+I   + + G+  F 
Sbjct: 1   MARIKVNLSKIQYNAKVLQTLLERRQIHLTPVVKCVA-----GDERIVSTIKSLGITHFA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII--FDTNLIPVISSVPQLTFYSKLMSCG 119
            + ++   +LR        F L       E +I     ++   + ++ QL   +K M   
Sbjct: 56  ESRIDNIERLRDLNIT---FTLLRPTTEFETMISTVKLSIQTELETIKQLNVIAKRM--N 110

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ- 178
           V H   L VD    R G+   + LD+     +    QL  +  +  C    +   N V  
Sbjct: 111 VKHQIMLMVDWKDGREGVLTYDVLDYIKEIMSMSHIQLVGLAFNFMCFKSKAPEENDVFM 170

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHF------QLTRPGISLY-GGTDKINKSHP 231
           + +F + +    G +  + S     + P   +         R G +L+ G     N+   
Sbjct: 171 INKFISAVEKEIGYKFKIISGGNSSMLPQTMYNDLGKINELRIGEALFRGIDTTTNEPIA 230

Query: 232 --MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLTLSGLDS 288
              Q  +  EA II I+              ++T  S + A+  IGY D +   +  + +
Sbjct: 231 SLYQDAIVLEAEIIEIK----------PRINQVTHQSYLQAIVDIGYLDTFTDGIKPIAN 280

Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           +                 + ++G  + D  M D+ +    ++GD IQ 
Sbjct: 281 D-----------------LKMIGA-SSDHLMIDLNNQDHYQIGDRIQF 310


>gi|242371844|ref|ZP_04817418.1| amino acid racemase [Staphylococcus epidermidis M23864:W1]
 gi|242350351|gb|EES41952.1| amino acid racemase [Staphylococcus epidermidis M23864:W1]
          Length = 353

 Score = 79.3 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 122/349 (34%), Gaps = 55/349 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
             R+ ++L+ +K N   +  +    +     VVK        G E+I   + + G+  F 
Sbjct: 1   MARINVNLSKIKYNAKVLQTILERKQIHFTPVVKCVA-----GDERIVSTIQSLGITHFA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF---DTNLIPVISSVPQLTFYSKLMSC 118
            + ++   +L+         +L      + + +      ++   + ++ +L   +K    
Sbjct: 56  ESRLDNIERLKDL--DVTFTLLRPTTESEFEAMVSKVKMSIQTELHTIKKLNTIAK--KL 111

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            V H   L +D    R G+   + LDF     N    QL  +  +  C    +   N V 
Sbjct: 112 NVKHQIMLMIDWKDGREGVLTYDTLDFIKEIMNLNHIQLVGVAFNFMCFKSAAPEENDVF 171

Query: 179 -LERFRTLISHYKGIEASLASSSGILLGPNYHF------QLTRPGISLY-GGTDKINKSH 230
            + +F + +    G +  + S     + P   +         R G +L+ G     N+  
Sbjct: 172 MINKFVSAVEKEMGYKFKIISGGNSSMLPQTMYNDLGKINELRIGEALFRGVDTTTNEPI 231

Query: 231 P--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLTLSGLD 287
               Q  +  EA II I+              +LT  S + A+  IGY D          
Sbjct: 232 ASLYQDAIVLEAEIIEIK----------PRINQLTHQSYLQAIFDIGYLD---------- 271

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
                +   G K         I+G  + D  M D+ +    ++GD IQ 
Sbjct: 272 -----TFIEGIKPIANDIK--IIGA-SSDHLMIDLNNQDHYQIGDRIQF 312


>gi|302390371|ref|YP_003826192.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
           16646]
 gi|302200999|gb|ADL08569.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
           16646]
          Length = 372

 Score = 78.2 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 14/191 (7%)

Query: 11  IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +DL  L+ N      +      R   +VK         +IA     AG + F V ++ E 
Sbjct: 13  VDLDVLEQNIKETADIVKTYGKRLWPMVKT----HKSTEIAAMQKAAGAEGFLVGTLLEA 68

Query: 69  VKLRLYTPQARIFVLYGIHPGQ-----EKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122
            +L        I + Y +   Q      ++     +I  I  V       S L   GV  
Sbjct: 69  ERLVEKGFN-DIMLAYPVAGRQNLKRVIRLAQKARIILSIDCVEVAREINSALEENGVEL 127

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
            Y + +D+G  R G+  ++A          K  +L  I +H       S      ++ R 
Sbjct: 128 EYLIIIDSGLRRFGVLPEDAAGLARELAALKTLKLVGIATHPGHVYGASGPEKVDEIARQ 187

Query: 183 R-TLISHYKGI 192
               +    GI
Sbjct: 188 EVDALRTAAGI 198


>gi|213581123|ref|ZP_03362949.1| alanine racemase [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-0664]
          Length = 53

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 9  LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
          + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A 
Sbjct: 6  VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDAD 53


>gi|311742136|ref|ZP_07715946.1| alanine racemase domain protein [Aeromicrobium marinum DSM 15272]
 gi|311314629|gb|EFQ84536.1| alanine racemase domain protein [Aeromicrobium marinum DSM 15272]
          Length = 342

 Score = 77.4 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/327 (16%), Positives = 101/327 (30%), Gaps = 43/327 (13%)

Query: 28  GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE---GVKLRLYTPQARIFVLY 84
             A    VVK N YG G +++A      G     V +  E    ++         + VL 
Sbjct: 22  ATAGLVPVVKGNGYGFGRDRLAAEASAFGADTIAVGTYAEVPGALE----AFDGDVMVLT 77

Query: 85  GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALD 144
              P    ++ D  ++  +  V  +   +            ++ +T  +R G    E   
Sbjct: 78  PWRPFTTDVVLDPRVVHTVGRVADVAALA----DHPGTRVVVEGETSMSRHGFDRHELAA 133

Query: 145 FTHNSFNKKLGQLSLII----SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSS 200
                 + ++   ++ +     HL  AD  ++ +++ +LE     +SH   +E +     
Sbjct: 134 AVAALGDLQVDGFAVHLPLTGGHLGEADRWAAALDASRLETTTFFVSHLTPVELT----- 188

Query: 201 GILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
             L     H    RP I         +        +     ++ +     GE V Y  Q 
Sbjct: 189 -ELRERRPHL-TVRPRIG-------TSLWLGDLAALEVRGTVLDVHAVARGEQVGY-RQG 238

Query: 261 KLTRDSLIAVAAIGYADGY------------PLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308
            + RD  + V A G + G                 S        +        + G    
Sbjct: 239 AVHRDGHLLVIAGGTSHGVGLEAPKAAAGAVARGKSLARGGLEAAGRSRSPFTVDGRQRW 298

Query: 309 ILGKITMDMTMFDITDSLSI-EVGDYI 334
            +    M  +M  +     +  VGD +
Sbjct: 299 FVEPPHMQASMVFLPAGARVPAVGDTV 325


>gi|255101991|ref|ZP_05330968.1| putative amino acid racemase [Clostridium difficile QCD-63q42]
 gi|255307859|ref|ZP_05352030.1| putative amino acid racemase [Clostridium difficile ATCC 43255]
          Length = 370

 Score = 77.4 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 82/254 (32%), Gaps = 26/254 (10%)

Query: 12  DLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           DL  L+ N   +  +    N +   ++K          IA    NAG   F   +++EG 
Sbjct: 14  DLDQLEKNIDKIQQICTNNNKQLWPMLKT----HKSTYIARLQKNAGASGFLAGTLDEGE 69

Query: 70  KLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHP 123
            L     +  I + Y             +    NLI    ++     YS+      +   
Sbjct: 70  ALIKAGFE-DIMLAYPYMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKIECK 128

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH----LACADDPSSHVNSVQL 179
             + VD G +R G+  ++ ++        +  ++  I SH      C+         VQ 
Sbjct: 129 LLIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPEGVPDVCVQE 188

Query: 180 E-----RFRTLISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINKSH-- 230
           +      ++ L  +   IE   + S+  +            RPG  +Y    +I      
Sbjct: 189 DSSMEKAYKALTDNGFNIEIVASGSTPTVESEAASKTITAVRPGNYVYYDAIQIGLGCAT 248

Query: 231 PMQTVVTAEARIIL 244
                +T    +I 
Sbjct: 249 EDMCALTVVCTVIS 262


>gi|167949694|ref|ZP_02536768.1| alanine racemase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 62

 Score = 77.0 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
           V YGG  +      +AV  +GY DGYP  + G           G    ++G  +P++G++
Sbjct: 4   VGYGGSYRCPEPMPVAVIGVGYGDGYPRHVPG-----------GTPVLLRGRRLPLVGRV 52

Query: 314 TMDMT 318
           +MDM 
Sbjct: 53  SMDMI 57


>gi|220932749|ref|YP_002509657.1| alanine racemase domain protein [Halothermothrix orenii H 168]
 gi|219994059|gb|ACL70662.1| alanine racemase domain protein [Halothermothrix orenii H 168]
          Length = 357

 Score = 77.0 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 119/358 (33%), Gaps = 57/358 (15%)

Query: 8   RLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           R+ I+L  ++ N    N         L+G  +  A         G  K+      AG+  
Sbjct: 5   RVNINLPRIRENASIFNRKCQQQGISLTGVVKVMA---------GDLKVIKTFVQAGLTS 55

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
              + +    K+R       + +L      +   +   + I + S V  +   S + +  
Sbjct: 56  LGDSRLYNLKKIREAGIGVELMLLRLPRLDEVSDVIKYSDISLNSEVTVIEALSREAIKV 115

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNS 176
             SH   + VD G  R G+  ++  +F     +     +  + +++ C     P+    +
Sbjct: 116 NRSHDIIVMVDVGDLREGVLPEDISEFFGKIIDLPGINIKGLGTNVGCYGGVLPTYKNTN 175

Query: 177 VQLERFRTLISHYKGIE---ASLASSSGILL-----GPNYHFQLTRPGISLYGGTDKINK 228
           + +E    +   Y G+     S  +S+   L      P+    L      L G     N+
Sbjct: 176 LLIELKEKMEVKY-GVHLPVISGGNSATTYLLDRNELPSGVNNLRVGEGILRGVYPTFNE 234

Query: 229 --SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGY 279
                 Q  +T  A II ++       G +         + +       A+ A+G     
Sbjct: 235 IIEGVNQNCITLTASIIEVKDKPSVPRGRIGRDAFGNKPRFEDRGIRRRAILAVG----- 289

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI 336
                 +       V  G         V ++G  + D  + DIT++   + VGD ++ 
Sbjct: 290 ---RQDVKISGLDPVLDG---------VEVIGA-SSDHLIVDITEARYDLSVGDELEF 334


>gi|332654124|ref|ZP_08419868.1| amino acid racemase [Ruminococcaceae bacterium D16]
 gi|332517210|gb|EGJ46815.1| amino acid racemase [Ruminococcaceae bacterium D16]
          Length = 364

 Score = 76.6 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 113/355 (31%), Gaps = 40/355 (11%)

Query: 3   SNEFLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           S ++  ++IDL  LK N  ++      +    + VVK           A      GV   
Sbjct: 5   SYQYPHVEIDLGKLKENLAALQERCQASSIEISGVVKGF---HALPAAAKVYEEVGVSSI 61

Query: 61  FVTSVEEGVKLR---LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKL 115
             + ++   +LR       +  + ++    P + + +   + I  ++S   +        
Sbjct: 62  ASSRMD---QLRGLKEAGIRTPLMLIRIPMPSEVEDVVTWSDI-SLNSERSVLRLLDEAA 117

Query: 116 MSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHN-SFNKKLGQLSLIISHLAC------- 166
            + G +H   L VD G  R G     E +        +    +L  + ++L C       
Sbjct: 118 RNQGKTHKVILMVDLGDLREGFWDWDELVAAALEVEHDLPNLELLGMGTNLGCYGSIQAT 177

Query: 167 -ADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGG 222
                     + Q+E+   +    + I    +SS  ++L    P     L      L G 
Sbjct: 178 PEKMHDLVAAAEQVEK--AIGRKLEVISGGASSSLHMVLDGTMPPRINHLRVGEGILLGS 235

Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
               N     + ++   A++I  +       V           +        Y D     
Sbjct: 236 IWGCNMDFMHKDIMVLRAQVIESK-VKPSHPVG-ELSVDAFGRTRT------YVDRGHR- 286

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI 336
           L  L +              +   + +LG  + D T+ D+  +   ++ GD ++ 
Sbjct: 287 LRCLLAMGRVDYGESDDLIPREPGIKVLGA-SSDHTILDVEGATRRLKTGDVLEF 340


>gi|315079988|gb|EFT51964.1| conserved domain protein [Propionibacterium acnes HL078PA1]
          Length = 65

 Score = 76.6 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 9  LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVT 63
            IDL+A+  N   +   +G+ +    VK +AYG G  +++  +          V 
Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVA 65


>gi|13474743|ref|NP_106312.1| hypothetical protein mlr5700 [Mesorhizobium loti MAFF303099]
 gi|14025498|dbj|BAB52098.1| mlr5700 [Mesorhizobium loti MAFF303099]
          Length = 608

 Score = 76.6 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 120/356 (33%), Gaps = 56/356 (15%)

Query: 8   RLKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYG-LGCEKIAPALYNAGVQDFFVTS 64
           ++ IDL  ++ N  ++         +   V K    G  G  ++A A+   GV     + 
Sbjct: 5   QVAIDLGRIERNARTIVDRCALSGIKVFGVTK----GMCGMPQVARAMLRGGVAGIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVS 121
            E   +LR     A I +L      + + +    D +L   ++++ +++  ++ M  G  
Sbjct: 61  FENIRRLRDSGINAPIMLLRSPPMARIEEVVRTVDISLQSELATIREISRIAERM--GRV 118

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQL 179
           H   L +D G  R G+   + +         K  +++ I ++L C  A  P +  N  QL
Sbjct: 119 HDIMLMIDLGDLREGIWPNDLIPTVEQILQFKGVRIAGIGTNLGCFGAIMP-TPENLGQL 177

Query: 180 ERFRTLISHYKGIEASL------ASSSGIL----LGPNYHFQLTRPGISLYGGTDKINKS 229
                      G   SL      ASSS  L      P     L      L GG +     
Sbjct: 178 VAHAYKTERLSG--KSLDWISGGASSSLTLLLEGRLPAGINNLRVGEAILQGGVETFRDV 235

Query: 230 HPMQT---VVTAEARIILIR---KALAGELV----SYGGQKKLTRDSLIAVAAIGYADGY 279
              +         + II ++       GE                D L A+A IG  D  
Sbjct: 236 PWAELEPDACRLTSDIIEVKLKPSRPIGESGYDAFGNQPVFPDEGDRLRAIANIGREDVL 295

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYI 334
              L+ +                    + +LG  + D  + D+ D      VGD +
Sbjct: 296 VEGLTPIA-----------------KGIRVLGA-SSDHLLLDVQDADPRPAVGDRV 333


>gi|319785530|ref|YP_004145006.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171418|gb|ADV14956.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 608

 Score = 76.6 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 119/355 (33%), Gaps = 54/355 (15%)

Query: 8   RLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYG-LGCEKIAPALYNAGVQDFFVTS 64
           ++ IDL  ++ N  ++         +   V K    G  G  ++A A+   GV     + 
Sbjct: 5   QVAIDLGRIERNARTIVERCALSGIKVFGVTK----GTCGMPQVARAMLRGGVAGIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVS 121
            E   +LR     A I +L      + + +    D +L   ++++ +++  ++ M  G  
Sbjct: 61  FENIRRLRDSGINAPIMLLRSPPMARVEEVVRTVDISLQSELATIREISRIAERM--GRV 118

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQL 179
           H   L +D G  R G+   + +         K  +++ I ++L C  A  P +  N  QL
Sbjct: 119 HDIMLMIDLGDLREGIWPNDLIPTVEQILQFKGVRIAGIGTNLGCFGAIMP-TPENLGQL 177

Query: 180 ERFRTLISHYKG-----IEASLASSSGIL---LGPNYHFQLTRPGISLYGGTDKINKSHP 231
                      G     I    +SS  +L     P     L      L GG +       
Sbjct: 178 VAHAYKTERLSGKSLDVISGGASSSLPLLLEGRLPAGINNLRVGEAILQGGVETFRDVPW 237

Query: 232 MQT---VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY---PLTLSG 285
            +         + II ++       +                   GY D +   P+    
Sbjct: 238 AELEPDACRLTSDIIEVK-LKPSRPIGQS----------------GY-DAFGNQPVFPDE 279

Query: 286 LDSEHSPSVFLGGKGFIKG-----YMVPILGKITMDMTMFDITD-SLSIEVGDYI 334
            D   + +        ++G       + +LG  + D  + D+ D      VGD +
Sbjct: 280 GDRLRAIANIGREDVLVEGLTPIAKGIRVLGA-SSDHLLLDVADADPRPSVGDRV 333


>gi|239980811|ref|ZP_04703335.1| hypothetical protein SalbJ_15302 [Streptomyces albus J1074]
 gi|291452670|ref|ZP_06592060.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291355619|gb|EFE82521.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 343

 Score = 75.9 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 113/336 (33%), Gaps = 46/336 (13%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARI 80
           H +           V K N YG G E++A      G     V +  E  +++ +     +
Sbjct: 17  HQVREQFPG--IVPVCKGNGYGFGHERLAEEAIRFGSDILAVGTTYEAARIKDW-FSGDL 73

Query: 81  FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ 140
            VL     G+E +     +I  +SSV         +   V     ++V +   R G+S +
Sbjct: 74  LVLTPFRRGEEPVPLPDRVIRSVSSVDG-------VHGLVGARVVIEVMSSMKRHGVSEE 126

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA----SL 196
           +         +    +L     HL       +      +     L +H   +       L
Sbjct: 127 DLPKLHAAIED---VRLEGFAIHLPLDRTDGTDAVEEVIAWMDRLRAHRLPLHTMFVSHL 183

Query: 197 ASSSGILL---GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGEL 253
            SS    L    P   F+  R G  L+ G ++  +             ++ + +   G+ 
Sbjct: 184 KSSELARLQQQFPQTRFR-ARIGTRLWLGDEEATEYRGA---------VLDVTQVSKGDR 233

Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
             Y  Q K   D  + V A G + G     P  L G+    +  V   G   +   + P 
Sbjct: 234 FGYRQQ-KAAGDGYLVVVAGGTSHGVGLESPKALHGVMPR-AKGVARAGLATVNRNLSPF 291

Query: 310 L--GKI-------TMDMTMFDIT-DSLSIEVGDYIQ 335
           +  GK         M +++  +  D+ + +VGD + 
Sbjct: 292 VWAGKQRWFAEPPHMQVSILFVPADAPAPQVGDELV 327


>gi|302390042|ref|YP_003825863.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
           16646]
 gi|302200670|gb|ADL08240.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
           16646]
          Length = 355

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 119/358 (33%), Gaps = 53/358 (14%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFV 62
           + R++I+L+ ++ N   +  L   +      + K   A       +   + + GV+    
Sbjct: 3   YPRIEINLSLIRENARYIVDLCKRSGIEVMGITKGFCA----LLPVVRTMVDGGVKKLGD 58

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKLMS 117
           + ++    ++    +  I+++    P + + +        N  P +  +       K  +
Sbjct: 59  SRIKNIKNMKCSGLEIPIYLIRIPMPSEVEEVVRWADGSFNSEPEVIDL----LSEKARA 114

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVN 175
            G  H   L VD G  R G+  ++  +           +   + +++ C     PS    
Sbjct: 115 LGKIHRVILMVDVGDLREGVMPEDVPEVVGRILEMPGVEFEGLGTNVGCYGGVLPSYENT 174

Query: 176 SVQLERFRTLISHY--KGIEASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINK- 228
            + ++  R +   Y  +    S  +++ + L  N          R G  +  GTD  N  
Sbjct: 175 KILVDLARDIEKRYGVRVKTISGGNTATLKLVENGRIAPGVNQLRIGEGILLGTDPTNGR 234

Query: 229 --SHPMQTVVTAEARIILIRKALAGELVSYGG-------QKKLTRDSLIAVAAIGYADGY 279
                 Q  +  +A II ++   +  +   G          +       A+ A+G  D  
Sbjct: 235 NVPGTSQATMVLKAEIIEVKVKPSKPIGEIGRDAFGNIPVFEDRGPMKRAIVALGKQD-- 292

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
              + GL         LG                + D  + D+T +   I VG  ++ 
Sbjct: 293 -CRIEGLIPLDESIEILGA---------------SSDHLLLDVTRAKRDIRVGSVVEF 334


>gi|302392467|ref|YP_003828287.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204544|gb|ADL13222.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 360

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 121/363 (33%), Gaps = 67/363 (18%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG--NARTAAVVK---DNAYGLGCEKIAPALYNAGVQD 59
            + RL++DL  +  N   +  L+   +     V K    +       KIA A+   GV  
Sbjct: 2   SYPRLEVDLDKVTANAERIVNLADSEDIEIIGVTKSVCAD------IKIAEAMLAGGVDG 55

Query: 60  FFVTSVEEGVKLR-----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
              + +     L+     L +P   + +L      +   + +   I + S +  +    +
Sbjct: 56  LADSRI---KNLKYMQENLVSPDIPLMLLRIPMISEVDRVVEYADISLNSELEVIKALDQ 112

Query: 115 LMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           +       H   L VD G  R G+  ++ +D      + +  +L+ + ++LAC       
Sbjct: 113 VAKEMNQKHRIILMVDVGDRREGVMPEDVIDIAAEILDLENIELTGLGTNLACFGGVLPS 172

Query: 174 VNSVQL---------ERFRTLISHYKGIEASLASSSGI--LLGPNYHFQLTRPGIS---L 219
            N++QL          +F   I    G      +SS +  L       ++T+  +    L
Sbjct: 173 ENNMQLLIDLKNEINNKFGVNIQQISG-----GNSSSLPRLRNKGLPDEITQLRVGETIL 227

Query: 220 YGGT--DKINKSHPMQTVVTAEARIILIRKAL------AGELVSYGGQKKLTRD-SLIAV 270
            G    D+       Q      A +I ++K         G+      +K         A+
Sbjct: 228 LGSNVIDRSPFPDTYQETFLLAAEVIEVKKKPVQPEGRRGQNAFGERRKITKTGVRRRAI 287

Query: 271 AAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIE 329
             IG  D     L+ L  +                        + D  + D+TD    IE
Sbjct: 288 LGIGRQDIKMKGLTPLAEDIEIEEA------------------SSDHLIIDVTDYEAGIE 329

Query: 330 VGD 332
           VGD
Sbjct: 330 VGD 332


>gi|312880008|ref|ZP_07739808.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783299|gb|EFQ23697.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260]
          Length = 354

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 114/349 (32%), Gaps = 52/349 (14%)

Query: 11  IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGL-GCEKIAPALYNAGVQDFFVTSVEE 67
           +    + +N   +     +       V K    GL G  ++       G      + V  
Sbjct: 8   VHGDRILHNVREVVRRCGAAGVDLWGVTK----GLCGNPQVGRLFLEGGCTALADSRVRN 63

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126
              LR    +A ++++      + + + +     ++S    L    +L  S G +    +
Sbjct: 64  LRGLREAGIRAPLYLIRIPMEQELEELVEVADGALVSMGETLEALEELCRSRGRTFRAVV 123

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA----DDPSSHVNSVQ-LER 181
            VD G  R G+  +E           +   +  + ++L C       P +    +Q  ER
Sbjct: 124 MVDVGDLREGVLPEELESLGRRCAALRHVVVEGLGTNLGCFGGILATPENLTELLQGAER 183

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYH-------FQLTRPGISLYGGTDKINK---SHP 231
           FR       G+EA L S    L                 R G +L  GTD        + 
Sbjct: 184 FREA----SGLEAPLVSGGATLSLKLLEEGTLPRGINHLRVGEALLLGTDSTGMRTIPYL 239

Query: 232 MQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
            Q  +   A+++ +R+      G +           +   +   A+ A+G  D     L 
Sbjct: 240 NQETMEIRAQVVELRRKPSVPRGTVGVDAFGAVPSFEDRGNRRRAILALGKQDV---RLE 296

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
           GL    S    LGG               + D  + D+ +  ++++GD 
Sbjct: 297 GLTPLESGVEILGG---------------SSDHLVCDVEEVPALQLGDV 330


>gi|242399214|ref|YP_002994638.1| putative amino acid racemase [Thermococcus sibiricus MM 739]
 gi|242265607|gb|ACS90289.1| putative amino acid racemase [Thermococcus sibiricus MM 739]
          Length = 375

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 13/164 (7%)

Query: 9   LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           + +DL  L+ N   +   +   N +   +VK          +A     AG   F   +++
Sbjct: 12  VVVDLDKLEFNIKEVAKEAKKHNKQLFPMVKT----HKSVYVANLQKKAGAGGFLCGTID 67

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQ----EKIIFDTNLIPV--ISSVPQLTFY-SKLMSCG 119
           E   L        + + Y I   +       + +  L  +  I SV    F  ++L   G
Sbjct: 68  EAEALAEAGLGETLMLAYPIMDKENFSRVARLIEDGLRVIFRIDSVDAAEFLDAELKKRG 127

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
           +   + + VDTG  R G+  ++  +F          +   I +H
Sbjct: 128 LRAEFTIIVDTGGVRYGIEPEKVGNFAKRVKEYSNLEFVGITTH 171


>gi|228474827|ref|ZP_04059558.1| alanine racemase domain protein [Staphylococcus hominis SK119]
 gi|228271490|gb|EEK12858.1| alanine racemase domain protein [Staphylococcus hominis SK119]
          Length = 353

 Score = 73.9 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 132/343 (38%), Gaps = 52/343 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             R+ I+L+ ++ N H +  L  S N     V+K  A   G E I   L   G   F  +
Sbjct: 1   MSRIVINLSKIEYNAHVLKMLFDSKNIAIIPVIKSIA---GDEHIIKRLMKVGFNYFAES 57

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN---LIPVISSVPQLTFYSKLMSCGV 120
            +E   +   +T   +  +L      Q + +   +   +   + ++ QL   +  MS   
Sbjct: 58  RLENIPQ--QFTKDCQFLLLRSPLKRQYEDLIKESYVSIQTEMVTIRQLNHIATEMS--H 113

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QL 179
            H   L VD    R G+   + +++ +        +L  +  +  C    +  +N + ++
Sbjct: 114 QHQVILMVDWKDQREGVLPYDIVEYINEIKLMNNIKLLGLAFNFMCFKSKAPTLNDIDEI 173

Query: 180 ERFRTLISHYKGIE---ASLASSSGILLGPNYHFQLT---RPGISLY-GGTDKINKSHP- 231
            +F   + +  G+     S  +SS + L   Y        R G +L+ G     N++ P 
Sbjct: 174 NQFVHHVQYETGVSFEVISGGNSSMLPLLKQYDLGCINELRIGETLFRGVDTTTNENIPE 233

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLTLSGLDSE 289
             Q  +  EA II I+            +   T++S + A+  +GY D            
Sbjct: 234 LFQNAILLEAEIIEIKP-----------RYTKTKESYLQAIVDVGYID------------ 270

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
              +V    K     + + I+G  + D  M D+ + ++ +VGD
Sbjct: 271 ---TVIEKIKPL--NHRIEIMGA-SSDHLMIDLKEEINYKVGD 307


>gi|332798070|ref|YP_004459569.1| alanine racemase domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332695805|gb|AEE90262.1| alanine racemase domain protein [Tepidanaerobacter sp. Re1]
          Length = 371

 Score = 73.5 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 13/170 (7%)

Query: 11  IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +DL  L+NN     AL  + +     ++K         +I      AG   F   +++E 
Sbjct: 13  VDLDILENNIKKAQALCDAHDKELWPMIKT----HKSTEIVKMQQEAGAAGFLCGTLDEC 68

Query: 69  VKLRLYTPQARIFVLYGI-HPGQEKIIFDT----NLIPVISSVPQLTFY-SKLMSCGVSH 122
             L     +  I   Y +  P   + + +     N I  I +            + GV  
Sbjct: 69  EGLAKAGIK-NIMYAYPVASPVNIQRVIELSKKCNFIIRIDNYDGAKMLNDAAEAAGVKV 127

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            Y + +D+G +R G+  ++ LDF ++  + K      I +H       S 
Sbjct: 128 NYTIIIDSGLHRFGILPEKVLDFANSLKDFKALNFLGISTHPGHVYSASK 177


>gi|34764268|ref|ZP_00145113.1| Alanine racemase, biosynthetic [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27885956|gb|EAA23287.1| Alanine racemase, biosynthetic [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 79

 Score = 72.8 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 212 LTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271
           L R GI +Y  T    K+  ++ + T ++R++ I+K      VSYG    L  DS  AV 
Sbjct: 8   LVRLGIGMYSFTGN-KKTSYLKNIFTIKSRVLFIKKVNKDSFVSYGRHYTLPADSTYAVL 66

Query: 272 AIGYADGYPLTL 283
            IGYADG    L
Sbjct: 67  PIGYADGLNKYL 78


>gi|119718891|ref|YP_925856.1| alanine racemase domain-containing protein [Nocardioides sp. JS614]
 gi|119539552|gb|ABL84169.1| alanine racemase domain protein [Nocardioides sp. JS614]
          Length = 351

 Score = 71.6 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 106/338 (31%), Gaps = 36/338 (10%)

Query: 17  KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE--GVKLRLY 74
           + +  ++   +       V K N YG    ++A      GV    V + +E   V  R  
Sbjct: 13  RAHLRTVADATPG--LVPVAKGNGYGFTLGRLARKAQWLGVDVLAVGTYDELPEVASRYA 70

Query: 75  TPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133
                + VL    P    +  D  L   V+ +V +      L++        L+  T   
Sbjct: 71  G---DLLVLTPWRPFGPAVELDAALAARVVHTVSRPGDLGDLLARQPDARVVLERATSML 127

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE 193
           R G++ +E         +    ++  +  HL  A    +H++ VQ      +++    ++
Sbjct: 128 RHGMTARELWSTPRILADHPKARVRGVALHLPLAH--GAHLSEVQ-RLMNDVVATELPLD 184

Query: 194 A----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249
                 L++     L  +Y     RP +         +     +  +   A ++ +    
Sbjct: 185 TVWVSHLSADDLAALRASYPDFTFRPRVG-------TDLWLGDRGALRVTATVLDVHPVE 237

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGY------------PLTLSGLDSEHSPSVFLG 297
            G+   Y   +   +   I V + G A G                 +        + F+ 
Sbjct: 238 RGDAFGY-RHRTAPKAGHILVVSGGTAHGIGLEAPTGDAGLRARAATLARGGLDAAGFVR 296

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSI-EVGDYI 334
               I G +        M  +M  +     +  VGD +
Sbjct: 297 SPFSIDGKLRLFAEPPHMQASMLFLPHGARVPSVGDQV 334


>gi|225389192|ref|ZP_03758916.1| hypothetical protein CLOSTASPAR_02938 [Clostridium asparagiforme
          DSM 15981]
 gi|225044741|gb|EEG54987.1| hypothetical protein CLOSTASPAR_02938 [Clostridium asparagiforme
          DSM 15981]
          Length = 65

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 1  MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
          M     +   ++L A+ +N   M   L        VVK + YG G   +A    +  V+ 
Sbjct: 1  MRPYNRVYATVNLDAVADNMKEMAGNLPSGTGMIGVVKADGYGHGSVPVA-MAVDPYVRG 59

Query: 60 FFVTSV 65
          F V +V
Sbjct: 60 FAVATV 65


>gi|309389791|gb|ADO77671.1| alanine racemase domain protein [Halanaerobium praevalens DSM 2228]
          Length = 360

 Score = 71.2 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 124/351 (35%), Gaps = 43/351 (12%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNART-AAVV-KDNAYGLGCEKIAPALYNAGVQDFFV 62
           ++ R+ IDL+ LK+N+  +N      +    VV K  A   G +KI     N+GV+    
Sbjct: 2   KYPRIDIDLSKLKSNFTKLNTKCLEKKINLTVVTKGIA---GDQKIIETFINSGVKSIAD 58

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121
           + ++   K+R    Q  I +L      +     D     +++ +      +K  +     
Sbjct: 59  SRLDNIKKIRKLNYQGEIILLRIPKKTEINEAVDYIDYSLVTELESCKLLAKAANKKNKK 118

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQL 179
               + VD G  R G+  Q+  DF           L  I ++L C     P        +
Sbjct: 119 IGVIVMVDIGDRREGVMPQDLTDFIQKIIKLPGLYLEGIGTNLGCYGCVIPDQANTKRII 178

Query: 180 ERFRTLISHY--KGIEASLASSSGILLGPNYHFQL----TRPGISLYGGTDKINK---SH 230
                +      K    S  +++   L      +      R G ++    D  N+    +
Sbjct: 179 ALKNKVEKELAIKINRLSGGNTATTNLFGTGLLEAEINNLRIGEAILLANDVTNQRQIDY 238

Query: 231 PMQTVVTAEARIILIRK---ALAGELVSY--GGQKKLTRDSLI--AVAAIGYADGYPLTL 283
             Q V T +A I+ +++      G       G Q K     ++  A+ AIG         
Sbjct: 239 LEQDVFTIKAEIVELKEKPSLPKGSQGCNFSGDQIKFKDKGIVKRAILAIG--------- 289

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDY 333
           S      S    L G        + ILG  + D  + D+++   +++ GD 
Sbjct: 290 SQDIDHSSLYPELKG--------IEILGS-SSDHLLLDLSNCKENLKYGDV 331


>gi|328883726|emb|CCA56965.1| hypothetical protein SVEN_3679 [Streptomyces venezuelae ATCC 10712]
          Length = 343

 Score = 71.2 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 103/325 (31%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  K++ +     + VL     G+E
Sbjct: 26  VIPVCKGNGYGFGHERLADEAARFGADMLAVGTTYEAAKIKDW-FSGDLLVLTPFRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SSV  +          V     ++  +   R G+  +E         +
Sbjct: 85  PVPLPDRVIRSVSSVDGVHAL-------VGARVVIECMSSMKRHGVREEELPQLHSAIED 137

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-----SGIL--L 204
               +L     HL       +      +     L +    +     S         L   
Sbjct: 138 ---VRLEGFALHLPLDRPDGTDAVEEVIGWMDRLRAARLPLHTMFVSHLRAEEQARLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+  R G  L+ G  +  +             ++ + +   G+   Y  Q K   
Sbjct: 195 FPQTRFR-ARIGTRLWLGDHEATEYRGA---------VLDVTRVAKGDRFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  + G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGWLVVVAGGTSHGVGLEAPKAMHGVMPR-AKGVARAGLATVNRNLSPFVWAGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  +  D+    VGD + 
Sbjct: 303 PPHMQVSILFVPSDAQEPRVGDELV 327


>gi|288573583|ref|ZP_06391940.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569324|gb|EFC90881.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 353

 Score = 70.8 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 119/357 (33%), Gaps = 51/357 (14%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--LSGNARTAAV--VKDNAYGLGCEKIAPALYNAGVQDF 60
            +  L +D   LK N   +         + AAV  V    Y  G  +IA     +GV   
Sbjct: 2   RYPALIVDREKLKENTSKLAKECHDRGIKVAAVSKV----Y-CGMPEIASVQAESGVDWI 56

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
             + +E   K+R         +L      Q +   +   +  +S V      SK      
Sbjct: 57  ADSRLENLAKMRD--IDIPKILLRLPMISQARETVELADMSFVSEVDTCRALSKAAVAMK 114

Query: 121 S-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSV 177
             H   L VD G  R G+    A+D      +     L  I ++L+C  A  PS   N  
Sbjct: 115 KEHQVLLMVDVGDLREGVWPDRAVDTAREIASMPGLILKGIGTNLSCYGAVLPS-PENLG 173

Query: 178 QLERFRTLISHYKGIE---ASLASSSGILL----GPNYHFQLTRPGISLYGGTDKINKSH 230
           QL      I    GI     S  +SS I L    G      + R G S+  G +  + + 
Sbjct: 174 QLVSVADSIESECGIHLDIVSGGNSSSIRLLLSGGIPERINMLRLGESMTIGKETADCTV 233

Query: 231 PMQT---VVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGYP 280
                  V T  A +I ++       G+       +    +       A+ A+G  D   
Sbjct: 234 IPGLHSDVFTFAAEVIELKTKPSIPIGKKGLDAFGHEPVFEDRGLRKRAIVAVGQQD--- 290

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
           + L  +      +  LG                + D  + D+TD    +++GD I+ 
Sbjct: 291 MRLDAISPRDKKTDILGA---------------SSDHMILDVTDGERDLKIGDVIEF 332


>gi|50059385|gb|AAT69421.1| alanine racemase [Borrelia miyamotoi]
          Length = 72

 Score = 70.8 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 1  MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
          M  N+   + I+   L++N  S+          A +K +AYG G  +    L   G+  F
Sbjct: 1  MIKNK--EIIINFKNLEHNVISIKNHVQKRELVATLKADAYGHGLIQTFKFLKKRGINYF 58

Query: 61 FVTSVEEGVKLRL 73
           +  +++ +KL+ 
Sbjct: 59 GLFWIDDALKLKK 71


>gi|319400063|gb|EFV88301.1| alanine racemase, N-terminal domain protein [Staphylococcus
           epidermidis FRI909]
          Length = 353

 Score = 70.8 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 122/344 (35%), Gaps = 57/344 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           ++++L+ +K N   + +L    +     V+K        G + I  ++ + G+  F  + 
Sbjct: 4   VRVNLSKIKYNAKVLQSLLECKQIHFTPVIKCVA-----GDKHIVSSIKSLGITHFAESR 58

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF---DTNLIPVISSVPQLTFYSKLMSCGVS 121
           ++   +L+         +L        + +    + ++   ++++ +L   +K  S  + 
Sbjct: 59  LDNIEQLKDLGITFT--LLRPTVEADLEKMISRVEMSIQTELTTIKKLNTLAK--SLDIK 114

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQL 179
           H   L VD    R G+   + + +          QL  +  +  C  ++ P+     + +
Sbjct: 115 HQIMLMVDWKDGREGVLTYDVVRYVQEILKLSHIQLVGLAFNFMCFKSEAPNEKDVRM-I 173

Query: 180 ERFRTLIS---HYKGIEASLASSS---GILLGPNYHFQLTRPGISLY-GGTDKINKSHP- 231
            +F   +    H+K    S  +SS     L          R G +L  G     N S   
Sbjct: 174 NKFIHDVESETHFKFRIISGGNSSMLPQTLYNHLDKINDLRIGEALLRGIDTTTNHSINS 233

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLTLSGLDSE 289
             Q  +  EA II I+              +    S + A+  IGY D            
Sbjct: 234 LYQNAIVLEAEIIEIK----------PRLYQKNNQSYLQAIVDIGYLD------------ 271

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
              +   G K    G  + ILG  + D  M D+ +    ++GD 
Sbjct: 272 ---TFIEGIKPL--GDDIRILGA-SSDHLMIDLNNQDHYQIGDK 309


>gi|314935883|ref|ZP_07843235.1| putative amino acid racemase [Staphylococcus hominis subsp. hominis
           C80]
 gi|313656448|gb|EFS20188.1| putative amino acid racemase [Staphylococcus hominis subsp. hominis
           C80]
          Length = 353

 Score = 70.5 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 131/343 (38%), Gaps = 52/343 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             R+ I+L+ ++ N H +  L  S N     V+K  A   G E I   L   G   F  +
Sbjct: 1   MSRIVINLSKIEYNGHVLKMLFDSKNIAIIPVIKSIA---GDEHIIKRLMKVGFNYFAES 57

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN---LIPVISSVPQLTFYSKLMSCGV 120
            +E   +   +T   +  +L      Q + +   +   +   + ++ QL   +  MS   
Sbjct: 58  RLENIPQ--QFTKDCQFLLLRSPLKRQYEDLIKESYVSIQTEMVTIRQLNHIATEMSN-- 113

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QL 179
            H   L VD    R G+     +++ +        +L  +  +  C    +  +N + ++
Sbjct: 114 QHQVILMVDWKDQREGVLPYHIVEYINEIKRMNNIKLLGLAFNFMCFKSKAPTLNDIDEI 173

Query: 180 ERFRTLISHYKGIE---ASLASSSGILLGPNYHFQLT---RPGISLY-GGTDKINKSHP- 231
            +F   + +  G+     S  +SS + L   Y        R G +L+ G     N++ P 
Sbjct: 174 NQFVHHVQYETGVSFEVISGGNSSMLPLLKQYDLGCINELRIGETLFRGVDTTTNENIPE 233

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLTLSGLDSE 289
             Q  +  EA II I+            +   T++S + A+  +GY D            
Sbjct: 234 LFQNAILLEAEIIEIKP-----------RYTKTKESYLQAIVDVGYID------------ 270

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
              +V    K     + + I+G  + D  M D+ + ++ +VGD
Sbjct: 271 ---TVIEKIKPL--NHRIEIMGA-SSDHLMIDLKEEINYKVGD 307


>gi|242244000|ref|ZP_04798443.1| amino acid racemase [Staphylococcus epidermidis W23144]
 gi|242232633|gb|EES34945.1| amino acid racemase [Staphylococcus epidermidis W23144]
          Length = 353

 Score = 69.7 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 122/344 (35%), Gaps = 57/344 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           ++++L+ +K N   + +L    +     V+K        G + I  ++ + G+  F  + 
Sbjct: 4   VRVNLSKIKYNAKVLQSLLECKQIHFTPVIKCVA-----GDKHIVSSIKSLGITHFAESR 58

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF---DTNLIPVISSVPQLTFYSKLMSCGVS 121
           ++   +L+         +L        + +    + ++   ++++ +L   +K  S  + 
Sbjct: 59  LDNIEQLKDLGITFT--LLRPTVKADLEKMISRVEMSIQTELTTIKKLNTLAK--SLDIK 114

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQL 179
           H   L VD    R G+   + + +          QL  +  +  C  ++ P+     + +
Sbjct: 115 HQIMLMVDWKDGREGVLTYDVVRYVQEILKLSHIQLVGLAFNFMCFKSEAPNEKDVRM-I 173

Query: 180 ERFRTLIS---HYKGIEASLASSS---GILLGPNYHFQLTRPGISLY-GGTDKINKSHP- 231
            +F   +    H+K    S  +SS     L          R G +L  G     N S   
Sbjct: 174 NKFIHDVESETHFKFRIISGGNSSMLPQTLYNHLDKINDLRIGEALLRGIDTTTNHSINS 233

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLTLSGLDSE 289
             Q  +  EA II I+              +    S + A+  IGY D            
Sbjct: 234 LYQNAIVLEAEIIEIK----------PRIYQKNNQSYLQAIVDIGYLD------------ 271

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
              +   G K    G  + ILG  + D  M D+ +    ++GD 
Sbjct: 272 ---TFIEGIKPL--GDDIRILGA-SSDHLMIDLNNQDHYQIGDK 309


>gi|158320722|ref|YP_001513229.1| alanine racemase domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140921|gb|ABW19233.1| alanine racemase domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 354

 Score = 68.5 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 111/350 (31%), Gaps = 46/350 (13%)

Query: 8   RLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           R+ I L+ LK+N   +  L        AAV K  +   G  +IA A  + G +    + +
Sbjct: 4   RIDIHLSKLKHNTKIITDLCKEKGIEVAAVTKGFS---GISEIAQAYVDGGARYLADSRI 60

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
           E   KL+  + +  +  L      +E +   D +L   + ++  +   +     G  H  
Sbjct: 61  ENLKKLKDISIEKIMLRLPMTSQVEETVAYADISLNSELETI--VALNNAAEKLGKIHKI 118

Query: 125 ALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL---- 179
            + VD G  R G   + E  D        +  ++  + ++L C         ++      
Sbjct: 119 IIMVDLGDLREGFFDEVELEDALLKMKKLQNIKVIGVGTNLTCYGGVIPDETNLGKLVEY 178

Query: 180 -ERFRTLIS-HYKGIEASLASSSGIL---LGPNYHFQLTRPGISLYGGTDKINK--SHPM 232
            E+   ++    + I    +SS  +L     P     L      L G      +   +  
Sbjct: 179 GEKIEKVLDTKLEIISGGNSSSFHLLEQDRIPKKINNLRLGETLLLGREAAYGELIENTH 238

Query: 233 QTVVTAEARIILIRKALAGELVSYGG-------QKKLTRDSLIAVAAIGYADGYPLTLSG 285
             V    A II I+   +  + + G          +       A+ A+G           
Sbjct: 239 HDVFQLVAEIIEIKDKPSHPIGTIGRDAFWNIPVFEDKGIMKRAILAVG--------RQD 290

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYI 334
                   V                   + D  + DIT      +VGD I
Sbjct: 291 TAGASIEPVDKNIDVL----------GASSDHLIIDITHCDREYKVGDEI 330


>gi|320009727|gb|ADW04577.1| alanine racemase domain protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 343

 Score = 68.1 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 105/328 (32%), Gaps = 50/328 (15%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLADEAIRFGSDILAVGTTYEAARIKDW-FSGDLLVLTPFRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SSV  +          V     ++  +   R G+  +E         +
Sbjct: 85  PVPLPDRVIRSVSSVDGVHAL-------VGARVVIECMSSMKRHGVKEEELGQLHAAIED 137

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL------- 204
               +L     HL       S      +     L +    +     S    L        
Sbjct: 138 ---VRLEGFALHLPLDRTDGSDAVEEVIAWMDRLRAARLPLHTMFVSH---LRAEELARL 191

Query: 205 ---GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
               P   F+  R G  L+ G  +  +             ++ + + + G+   Y  Q K
Sbjct: 192 QQQFPQTRFR-ARIGTRLWLGDHEATEYRGA---------VLDVTRVVKGDRFGYRQQ-K 240

Query: 262 LTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI-- 313
              D  + V A G + G     P  L G+    +  V   G   +   + P +  GK   
Sbjct: 241 AASDGWLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWAGKQRW 299

Query: 314 -----TMDMTMFDIT-DSLSIEVGDYIQ 335
                 M +++  +  D+   +VGD + 
Sbjct: 300 FAEPPHMQVSILFVPSDAQEPKVGDELV 327


>gi|27468687|ref|NP_765324.1| hypothetical protein SE1769 [Staphylococcus epidermidis ATCC 12228]
 gi|57867700|ref|YP_189342.1| hypothetical protein SERP1778 [Staphylococcus epidermidis RP62A]
 gi|251812100|ref|ZP_04826573.1| amino acid racemase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875395|ref|ZP_06284268.1| alanine racemase, N-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|293368486|ref|ZP_06615110.1| amino acid racemase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316235|gb|AAO05410.1|AE016750_15 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57638358|gb|AAW55146.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|251804434|gb|EES57091.1| amino acid racemase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296160|gb|EFA88681.1| alanine racemase, N-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|291317444|gb|EFE57866.1| amino acid racemase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329731271|gb|EGG67641.1| alanine racemase, N-terminal domain protein [Staphylococcus
           epidermidis VCU144]
 gi|329736454|gb|EGG72722.1| alanine racemase, N-terminal domain protein [Staphylococcus
           epidermidis VCU028]
 gi|329737053|gb|EGG73308.1| alanine racemase, N-terminal domain protein [Staphylococcus
           epidermidis VCU045]
          Length = 353

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 122/344 (35%), Gaps = 57/344 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           ++++L+ +K N   + +L          V+K        G ++I  ++ + G+  F  + 
Sbjct: 4   VRVNLSKIKYNAKVLQSLLERRHIHFTPVIKCVA-----GDKRIVSSIKSLGITHFAESR 58

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF---DTNLIPVISSVPQLTFYSKLMSCGVS 121
           ++   +L+         +L        + +    + ++   ++++ +L   +K  S  + 
Sbjct: 59  LDNIEQLKDLDITFT--LLRPTVEADLEKMISRVEMSIQTELTTIKKLNTLAK--SLDIK 114

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQL 179
           H   L VD    R G+   + + +          QL  +  +  C  ++ P+     + +
Sbjct: 115 HQIMLMVDWKDGREGVLTYDVVRYVQEVLRLSHIQLVGLAFNFMCFKSEAPNEKDVRM-I 173

Query: 180 ERFRTLIS---HYKGIEASLASSS---GILLGPNYHFQLTRPGISLY-GGTDKINKSHP- 231
            +F   +    H+K    S  +SS     L          R G +L  G     N S   
Sbjct: 174 NKFIHNVENETHFKFRIISGGNSSMLPQTLYNHLDKINDLRIGEALLRGIDTTTNHSINS 233

Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLTLSGLDSE 289
             Q  +  EA II I+              +    S + A+  IGY D            
Sbjct: 234 LYQNAIVLEAEIIEIK----------PRLYQKNNQSYLQAIVDIGYLD------------ 271

Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
              +   G K    G  + ILG  + D  M D+ +    ++GD 
Sbjct: 272 ---TFIEGIKPL--GNDIRILGA-SSDHLMIDLNNQDHYQIGDK 309


>gi|254429781|ref|ZP_05043488.1| Alanine racemase, N-terminal domain family [Alcanivorax sp. DG881]
 gi|196195950|gb|EDX90909.1| Alanine racemase, N-terminal domain family [Alcanivorax sp. DG881]
          Length = 362

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 120/356 (33%), Gaps = 60/356 (16%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           RL I+L  + +N   +    G+   A   V K  A  LG   IA A+  AG+     + +
Sbjct: 5   RLDINLDKISHNARMLVEDLGDRGIAVTGVTKA-A--LGSLDIAKAMLRAGMSGLGDSRI 61

Query: 66  E--EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSH 122
           E  E +  R     A I ++      Q + +     I   + +  +   S        SH
Sbjct: 62  ENIEAM--RQQRISAPIMLIRSPMLSQVERVVRNADISFNTELSVVRRLSAAAEEAERSH 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS------ 172
              L V+ G  R G+  ++ +            +L+ I ++LAC    A D  +      
Sbjct: 120 GIMLMVELGDLREGILPEDLVSAAREVMRLPNLELTGIGTNLACHSGMAPDADNMGALSA 179

Query: 173 --HVNSVQLERFRTLISHY--KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
                  +L+    LIS      ++ +L++S+             R G +++ G + +++
Sbjct: 180 LADRVEAELDVKLALISGGNSANLDWALSNSA------TGRINHLRLGEAIFLGCEPLHR 233

Query: 229 SHPMQT---VVTAEARIILIRKAL-------AGELVSYGGQKKLTRDSLIAVAAIGYADG 278
                     +T  A +I  +          A            +     A+ A+G  D 
Sbjct: 234 EPVDGLHTDAITLVAEVIESKTKPSLPWGTLAETAFGGDVISTDSGAMARAILAVGEQD- 292

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
                            L   G +    + ILG  + D  + D      + VGD +
Sbjct: 293 -----------------LDPDGLLAPEGLTILGA-SGDHLLLDCGKQH-LRVGDEV 329


>gi|302543988|ref|ZP_07296330.1| alanine racemase domain-containing protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461606|gb|EFL24699.1| alanine racemase domain-containing protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 343

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 109/335 (32%), Gaps = 47/335 (14%)

Query: 22  SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF 81
            +    G      V K N YG G E++A      G     V +  E  +++ Y     + 
Sbjct: 19  VIQQFPG---IVPVCKGNGYGFGHERLAEEAARIGADVLAVGTTYEAARMKDY-FSGDLL 74

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141
           VL     G+E +     +I  +SSV  +          V+    ++V +   R G++ ++
Sbjct: 75  VLTPFRRGEEPVPLPDRVIRSVSSVDGVYGL-------VNARVVIEVMSSMKRHGVTEED 127

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-- 199
                      +  +L     HL              +     L +    +     S   
Sbjct: 128 LPKLHAAI---ENVRLEGFAIHLPLDRTDGIDAVEEVIGWMDRLRAARLPLHTMFVSHLK 184

Query: 200 SGILL-----GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELV 254
           +  L       P   F+  R G  L+ G  +  +             ++ + +   GE  
Sbjct: 185 ADELARLQQQFPQTRFR-ARIGTRLWLGDHESTEYRGA---------VLDVTRVAKGERF 234

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
            Y  Q K   D  + V A G + G     P  L G+    +  V   G   +   + P +
Sbjct: 235 GYRQQ-KAASDGFLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFV 292

Query: 311 --GKI-------TMDMTMFDIT-DSLSIEVGDYIQ 335
             GK         M +++  +  D  + +VGD + 
Sbjct: 293 WAGKQRWFAEPPHMQVSILFVPGDVTAPQVGDELV 327


>gi|311032754|ref|ZP_07710844.1| alanine racemase domain protein [Bacillus sp. m3-13]
          Length = 390

 Score = 67.4 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 43  LGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIF-----D 96
               +IA      G        +EE   +     +  I V Y +  P + + I      +
Sbjct: 45  HKSVEIAKLQLEHGAIGITTAKLEEAEVMAASGIK-DILVAYPVSSPAKIERIIALLDQE 103

Query: 97  TNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKL 154
            +L   + S+ Q+    K +     S    ++V++G NR G+   + A++          
Sbjct: 104 VDLKITVDSLEQVKLLQKALEKTSHSLEVWIKVNSGLNRCGVEPGERAVELAKAIILLSR 163

Query: 155 GQLSLIISH 163
            ++  I +H
Sbjct: 164 LRIGGIFTH 172


>gi|314965673|gb|EFT09772.1| alanine racemase protein [Propionibacterium acnes HL082PA2]
 gi|315094623|gb|EFT66599.1| alanine racemase protein [Propionibacterium acnes HL060PA1]
 gi|315105342|gb|EFT77318.1| alanine racemase protein [Propionibacterium acnes HL050PA2]
 gi|327328854|gb|EGE70614.1| amino acid racemase [Propionibacterium acnes HL103PA1]
          Length = 362

 Score = 67.4 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 126/362 (34%), Gaps = 50/362 (13%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM--NALSGNARTAAV--VKDNAYGLGCEKIA-PALYNA 55
           M+ +   RL+I    +++N  ++         + AAV  V      L    +   AL + 
Sbjct: 1   MNRSTP-RLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV------LHAHPVLLQALEDT 53

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           GV     + ++   ++          +L                I + SS+  +T  S+ 
Sbjct: 54  GVTMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEA 113

Query: 116 M-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDP 170
               G  H   + VD G  R G+     +D   ++       +  + ++LAC        
Sbjct: 114 AVRAGTHHGVIVMVDVGDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGGVQPSI 173

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLYGGTDKI 226
            +    VQL       +  +    S  +S+ + L             R G ++  G + +
Sbjct: 174 ENMTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTL 233

Query: 227 NKSHPMQT---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI-AVAAIGYA 276
           ++S   QT    V   A II + +      G      +G       R   + A+  +G  
Sbjct: 234 DRSPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQ 293

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQ 335
           D  P  L+ +D  H                  +LG  + D  + D+TD S S+E+G  ++
Sbjct: 294 DVNPSDLAPVDPGHI-----------------VLGA-SSDHLIVDMTDSSESVEIGTEVR 335

Query: 336 IF 337
            +
Sbjct: 336 FW 337


>gi|297193319|ref|ZP_06910717.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718363|gb|EDY62271.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 343

 Score = 67.0 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 105/325 (32%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E+++      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLSEEASRFGADMLAVGTTYEAARIKDW-FSGDLLVLTPFRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     ++  +SSV  +          V     ++  +   R G+S Q+         +
Sbjct: 85  PVPLPDRVVRSVSSVDGVHAL-------VGARVVIECMSSMKRHGISEQDLGQLHAAIED 137

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-----SGIL--L 204
               +L     HL       S      +     L +    +     S         L   
Sbjct: 138 ---VRLEGFALHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLRAQEQARLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+  R G  L+ G  +  +             ++ + +   G+   Y  Q K   
Sbjct: 195 FPQTRFR-ARIGTRLWLGDHESTEYRGA---------VLDVTRVSRGDRFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGWLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWAGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  +  D+   +VGD + 
Sbjct: 303 PPHMQVSILFVPADAQEPKVGDELV 327


>gi|213024361|ref|ZP_03338808.1| alanine racemase [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 42

 Score = 67.0 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 9  LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC 45
          + I+  AL++N   +  L+  ++  AVVK NAYG G 
Sbjct: 6  VVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGS 42


>gi|307329994|ref|ZP_07609146.1| alanine racemase domain protein [Streptomyces violaceusniger Tu
           4113]
 gi|306884370|gb|EFN15404.1| alanine racemase domain protein [Streptomyces violaceusniger Tu
           4113]
          Length = 343

 Score = 67.0 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 101/335 (30%), Gaps = 47/335 (14%)

Query: 22  SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF 81
            +    G      V K N YG G E++A      G     V +  E  +++       + 
Sbjct: 19  VIQQFPG---IVPVCKGNGYGFGHERLAEEAARMGSDVLAVGTTYEAARMKD-FFSGDLL 74

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141
           VL     G+E +     +I  +SSV  +          V+    ++V +   R G++ Q+
Sbjct: 75  VLTPFRRGEEPVPLPDRVIRSVSSVDGVYGL-------VNARVVIEVMSSMKRHGITEQD 127

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSG 201
                      +  +L     HL              +     L +    +     S   
Sbjct: 128 LPKLHAAI---ENVRLEGFAIHLPLDRTDGLDAVEEVIAWMDRLRAARLPLHTMFVSHLK 184

Query: 202 ILL-------GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELV 254
                      P   F+         G  D                 ++ + +   G+  
Sbjct: 185 AEELARLQQQFPQTRFRARIGTRLWLGDHDSTEY----------RGSVLDVTRVAKGDRF 234

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
            Y  QK  + D  + V A G + G     P  L G+    +  V   G   +   + P +
Sbjct: 235 GYRQQKSAS-DGHLVVVAGGTSHGVGLEAPKALHGMMPR-AKGVARAGLATVNRNLSPFV 292

Query: 311 --GKI-------TMDMTMFDITDSLSI-EVGDYIQ 335
             GK         M +++  +   +   +VGD + 
Sbjct: 293 WAGKQRWFAEPPHMQVSILFVPGDVQAPQVGDELV 327


>gi|314922754|gb|EFS86585.1| alanine racemase protein [Propionibacterium acnes HL001PA1]
          Length = 362

 Score = 67.0 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 126/362 (34%), Gaps = 50/362 (13%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM--NALSGNARTAAV--VKDNAYGLGCEKIA-PALYNA 55
           M+ +   RL+I    +++N  ++         + AAV  V      L    +   AL + 
Sbjct: 1   MNRSTP-RLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV------LHAHPVLLQALEDT 53

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           GV     + ++   ++          +L                I + SS+  +T  S+ 
Sbjct: 54  GVTMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVHLADISLNSSLTTMTALSEA 113

Query: 116 M-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDP 170
               G  H   + VD G  R G+     +D   ++       +  + ++LAC        
Sbjct: 114 AVRAGTHHGVIVMVDVGDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGGVQPSI 173

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLYGGTDKI 226
            +    VQL       +  +    S  +S+ + L             R G ++  G + +
Sbjct: 174 ENMTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTL 233

Query: 227 NKSHPMQT---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI-AVAAIGYA 276
           ++S   QT    V   A II + +      G      +G       R   + A+  +G  
Sbjct: 234 DRSPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQ 293

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQ 335
           D  P  L+ +D  H                  +LG  + D  + D+TD S S+E+G  ++
Sbjct: 294 DVNPSDLAPVDPGHI-----------------VLGA-SSDHLIVDMTDSSESVEIGTEVR 335

Query: 336 IF 337
            +
Sbjct: 336 FW 337


>gi|290959027|ref|YP_003490209.1| hypothetical protein SCAB_46061 [Streptomyces scabiei 87.22]
 gi|260648553|emb|CBG71664.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 343

 Score = 67.0 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 107/325 (32%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G EK+A      G     V +  E  +++ +     + VL      +E
Sbjct: 26  LVPVCKGNGYGFGHEKLAEEATRLGSDILAVGTTYEAARIKDW-FSGDLLVLTPYRRAEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SSV  +          V     ++V +   R G+S QE          
Sbjct: 85  PVPLPDRVIRSVSSVDGVYGL-------VGARVVIEVMSSMKRHGVSEQELPQLHAAI-- 135

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS---SSGILL---- 204
            +  +L     HL       S      +     L +    +     S   S  ++     
Sbjct: 136 -ENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKSEDLIRLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+  R G  L+ G  +  +             ++ + +   G+   Y  Q K   
Sbjct: 195 FPQTRFR-ARIGTRLWLGDHEATEYRGA---------VLDVTRVAKGDRFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGFLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWAGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  +  D+   +VG+ + 
Sbjct: 303 PPHMQVSILFVPSDAPEPKVGEELV 327


>gi|289550210|ref|YP_003471114.1| hypothetical protein SLGD_00839 [Staphylococcus lugdunensis
           HKU09-01]
 gi|289179742|gb|ADC86987.1| Hypothetical protein SLGD_00839 [Staphylococcus lugdunensis
           HKU09-01]
          Length = 362

 Score = 66.6 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 114/350 (32%), Gaps = 57/350 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFF-- 61
             +L I+L  +K N   + +   +       VV   A   G  +I   L   G+ +    
Sbjct: 1   MPKLNINLAKIKYNAQVLQSFLASKDINFTPVVTAIA---GDREILKVLKQVGLTEIADS 57

Query: 62  -VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMS 117
            + +++     R   P     +L       +K I      ++   ++S+          +
Sbjct: 58  RLANIQ-----RFGDPDVNFILLKSHAEDCDKEIIQHVKISVQTELTSI--YRLNEVAQT 110

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL----ACADDPSSH 173
            G +H   L VD    R G+   + L + H   + K  ++  +  +     + A      
Sbjct: 111 LGTTHQIVLMVDWKDGREGVLTYDVLQYLHEIMSLKHIKVIGLAFNFMSFKSEAPSDDDI 170

Query: 174 VNSVQLERFRTLISHYKGIEASLASSS---GILLGPNYHFQLTRPGISLY-GGTDKINKS 229
               Q          Y+    S  +SS    ++          R G +L+ G      + 
Sbjct: 171 FTMNQFICAVEKELGYRLKLISGGNSSMLPQLMYNDLGKINDLRIGDTLFRGENTTSGQP 230

Query: 230 HP--MQTVVTAEARIILIR-KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
            P   Q  +T EA+II I+ +       SY            A+  IGY D     +  +
Sbjct: 231 MPNLYQHAITLEAQIIEIKPRVNMETKQSYLQ----------AIVNIGYIDTVTNNIQPM 280

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           D                   + I+G  + D  M D+ +    ++GD I  
Sbjct: 281 D-----------------KELKIIGA-SSDYLMIDLNNQDGYQLGDTITF 312


>gi|254391453|ref|ZP_05006655.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294813716|ref|ZP_06772359.1| Alanine racemase domain protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326442138|ref|ZP_08216872.1| hypothetical protein SclaA2_13789 [Streptomyces clavuligerus ATCC
           27064]
 gi|197705142|gb|EDY50954.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294326315|gb|EFG07958.1| Alanine racemase domain protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 343

 Score = 66.6 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 100/325 (30%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E+++  +   G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLSEEVNRFGTDMLAVGTTYEAARIKDW-FGGDLLVLTPFRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     ++  +SSV  +          V     ++  +   R G+   E    T    N
Sbjct: 85  PVPLPDRVVRSVSSVDGVHAL-------VGARVVIECMSSMKRHGVLEHELPQLTAAIDN 137

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS--SGILL----- 204
               +L     HL       S      +     L +    +     S   +  L      
Sbjct: 138 ---VRLEGFALHLPLDRTDGSDAVEEVIAWMDRLRAARLPLHTMFVSHLRADELARLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+         G  D                 ++ + +   G+   Y  Q K   
Sbjct: 195 FPQTRFRARIGTRLWLGDHDSTQY----------RGAVLDVTRVAKGDRFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGWLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWAGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  I  D+    VGD + 
Sbjct: 303 PPHMQVSILFIPSDAQEPRVGDELV 327


>gi|315659158|ref|ZP_07912022.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
 gi|315495583|gb|EFU83914.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
          Length = 362

 Score = 66.6 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 114/349 (32%), Gaps = 55/349 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFF-- 61
             +L I+L  +K N   + +   +       VV   A   G  +I   L   G+ +    
Sbjct: 1   MPKLNINLAKIKYNAQVLQSFLASKDINFTPVVTAIA---GDREILKVLKQVGLTEIADS 57

Query: 62  -VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT---NLIPVISSVPQLTFYSKLMS 117
            + +++     R   P     +L       +K I      ++   ++S+          +
Sbjct: 58  RLANIQ-----RFGDPDVNFILLKSHAEDCDKEIIQHVKISVQTELTSI--YRLNEVAQT 110

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL----ACADDPSSH 173
            G +H   L VD    R G+   + L + H   + K  ++  +  +     + A      
Sbjct: 111 LGTTHQIVLMVDWKDGREGVLTYDVLQYLHEIMSLKHIKVIGLAFNFMSFKSEAPSDDDI 170

Query: 174 VNSVQLERFRTLISHYKGIEASLASSS---GILLGPNYHFQLTRPGISLY-GGTDKINKS 229
               Q          Y+    S  +SS    ++          R G +L+ G      + 
Sbjct: 171 FTMNQFICAVEKELGYRLKLISGGNSSMLPQLMYNDLGKINDLRIGDTLFRGENTTSGQP 230

Query: 230 HP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P   Q  +T EA+II I+              K  +  L A+  IGY D     +  +D
Sbjct: 231 MPNLYQHAITLEAQIIEIKP---------RVNMKTKQSYLQAIVNIGYIDTVTNNIQPMD 281

Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
                              + I+G  + D  M D+ +    ++GD I  
Sbjct: 282 -----------------KELKIIGA-SSDYLMIDLNNQDGYQLGDTITF 312


>gi|317127511|ref|YP_004093793.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315472459|gb|ADU29062.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 367

 Score = 66.6 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 19/224 (8%)

Query: 43  LGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT----N 98
                IA      G     V +  E   L        +       P + K +        
Sbjct: 43  HKSVWIAKRQIEKGASGITVATASEAELLFENGLTDILLAFPLADPVRLKKLLKWSKRAR 102

Query: 99  LIPVISSVPQLTFYSKLMSCGVSHP-YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQ 156
           LI  + S  Q+     +    +  P   ++V++G NR G+    EA +      N +   
Sbjct: 103 LILTVDSEEQVKIIEAIAKELIVTPEVWIKVNSGLNRCGVEPGVEAFNLAECINNTETLD 162

Query: 157 LSLIISH--LACADDPSSHVNSVQLERFRTLISHYK-----GI---EASLASSSGILLGP 206
           L+ + +H   + A      VN +  +   +++   +     GI     S+ S+     G 
Sbjct: 163 LTGMYTHAGHSYAAKCEEEVNRIAKQEAESILRSVELCEKNGIIIPNRSIGSTPTFERGA 222

Query: 207 NYHF-QLTRPGISLYGGTDKINKSHPMQT--VVTAEARIILIRK 247
            Y      RPG +++    ++      +    +T  A I  ++ 
Sbjct: 223 KYAGITEVRPGNAVFFDNIQVALGIASEEEVALTVLASIASVKN 266


>gi|256389571|ref|YP_003111135.1| alanine racemase domain-containing protein [Catenulispora
           acidiphila DSM 44928]
 gi|256355797|gb|ACU69294.1| alanine racemase domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 352

 Score = 66.6 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 84/262 (32%), Gaps = 26/262 (9%)

Query: 26  LSGNARTAAVVKD-NAYGLGC---EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF 81
           L+ +     V K  N YG+G     + A  L  AGV+   V +  E  + + +    R+ 
Sbjct: 20  LARHPDLVPVAKGVNGYGIGIPNLMQAASKLAAAGVEITAVGTAAEAEQAKDH-YSGRLL 78

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141
           VL     G++       +I  ++SV  +          +     + + T   R GL  Q+
Sbjct: 79  VLTPYLIGEDVRDLPDRVIRTVASVEAVEAL-------LGRRVVIDLMTSMRRFGLEKQD 131

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA----SLA 197
                H +      ++     H+   D  +        +    L++    +       L+
Sbjct: 132 IPRL-HAALESDQARVEGFSVHMPL-DRVAGDYLREVSDWVDALVAAGIPVRTLFVSHLS 189

Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
                 L   +     RP I               +  + A   +  ++K   G+   Y 
Sbjct: 190 PDEISTLAKRHQGTTVRPRIG-------TQLWLGDRKALQARGTVHSVQKVSKGDRFGYR 242

Query: 258 GQKKLTRDSLIAVAAIGYADGY 279
              K   D  + V + G A G 
Sbjct: 243 QH-KARGDGHLLVVSGGTAHGV 263


>gi|329938663|ref|ZP_08288059.1| hypothetical protein SGM_3551 [Streptomyces griseoaurantiacus M045]
 gi|329302154|gb|EGG46046.1| hypothetical protein SGM_3551 [Streptomyces griseoaurantiacus M045]
          Length = 343

 Score = 66.2 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 107/325 (32%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLAEEATRMGSDILAVGTTYEAARIKDW-FGGDLLVLTPFRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SS+  +          V     ++V +   R G+S Q+          
Sbjct: 85  PVPLPDRVIRSVSSIDGVYGL-------VGARVVIEVMSSMKRHGVSEQDLPQLHSAI-- 135

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS--SGILL----- 204
            +  +L     HL       S      +     L +    +     S   +  L      
Sbjct: 136 -ENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKADELARLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+  R G  L+ G  +  +             ++ + +   GE   Y  Q K   
Sbjct: 195 FPQTRFR-ARIGTRLWLGDHEATEYRGA---------VLDVTRVAKGERFGYRQQ-KAAT 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGYLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLAPFVWAGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  +  D+   +VGD + 
Sbjct: 303 PPHMQVSILFVPSDTTEPKVGDELV 327


>gi|254430666|ref|ZP_05044369.1| amino acid racemase [Cyanobium sp. PCC 7001]
 gi|197625119|gb|EDY37678.1| amino acid racemase [Cyanobium sp. PCC 7001]
          Length = 369

 Score = 66.2 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 106/357 (29%), Gaps = 41/357 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTA------AVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           RL+I+L+ L +N  ++         A      AV       LG  +I      AG+    
Sbjct: 5   RLEINLSHLHHNARTLVRRLARQGIAVTGVSKAV-------LGMPEIVRTWLAAGLGSIG 57

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM----S 117
            + ++    L     QA + ++      Q   +        IS   +      L      
Sbjct: 58  ESRLDTAEALARGGLQAPLLMIRTPMLSQVARVVAH---AAISCNTEPRVLEALAVAARK 114

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVN 175
            G  H   L V+ G  R G+   +       +      QL  I S+L C     P +   
Sbjct: 115 QGRRHGVLLMVELGDLREGILPGDLERIAQLTLALPSLQLVGIGSNLGCQHGVAPDAANM 174

Query: 176 SVQLERFRTLISHYKGI--EASLASSSGILL----GPNYHFQLTRPGISLYGGTDKINKS 229
           +   E   TL +         S  +S+ +      G        R G +L  G + + +S
Sbjct: 175 AELSELAETLEARLSTRLQLISGGNSANLPWLAQGGAPGRINHLRLGEALLLGREPLGRS 234

Query: 230 HP---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                          +I ++    G      G          A       D  P     L
Sbjct: 235 AIPGLHTNAFRLVGEVIEVKT-KPGLAWGSRGLTSFMAPGGPAGLPC--HDRDPRQRGLL 291

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343
                 S   G +       V I+G  + D  +  +     + VG+ +  FGP    
Sbjct: 292 ALGVQDSDPAGLEPPPG---VAIVGA-SSDHLV--LESLHPLTVGEEVG-FGPSYSA 341


>gi|295837780|ref|ZP_06824713.1| alanine racemase [Streptomyces sp. SPB74]
 gi|197698937|gb|EDY45870.1| alanine racemase [Streptomyces sp. SPB74]
          Length = 343

 Score = 66.2 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 94/305 (30%), Gaps = 37/305 (12%)

Query: 17  KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76
            ++ H +    G      V K N YG G E++A      G     V +  E  +++ +  
Sbjct: 14  AHHKHVLEQFPG---IVPVCKGNGYGFGHERLAEEATRFGSDMLAVGTTYEAARIKDW-F 69

Query: 77  QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLG 136
              + VL     G+E +     +I  +SSV  +          V     ++V +   R G
Sbjct: 70  SGDLLVLTPFRRGEEPVPLPDRVIRSVSSVDGVQAL-------VGARVMIEVMSSMKRHG 122

Query: 137 LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           +S  +              +L     HL       +      +     L      +    
Sbjct: 123 VSRSDLQALGSAI---DGVRLEGFAIHLPLDRTDGTDAVEEVIAWMDALRGARLPLHTMY 179

Query: 197 ASS--SGILL-----GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249
            S   +  L       P   F+  R G  L+ G  +                ++ + +  
Sbjct: 180 VSHVKADELARLSQQFPQTRFR-ARIGTLLWLGDHE---------ATQYRGTVLDVTRVA 229

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGY 305
            GE   Y  Q K   D  + V A G + G     P  L G+    +  V   G   +   
Sbjct: 230 KGERFGYRQQ-KAASDGWLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRN 287

Query: 306 MVPIL 310
           + P +
Sbjct: 288 LSPFV 292


>gi|46206246|ref|ZP_00210259.1| COG0787: Alanine racemase [Magnetospirillum magnetotacticum MS-1]
          Length = 80

 Score = 66.2 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 156 QLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHF 210
           ++  + SHLA AD+P       Q + F   +              LA+S+  L  P  H+
Sbjct: 2   RVVGMWSHLAFADEPGHPTVIAQADVFDEAVRKAARAGVVPELRHLANSAATLTAPRTHY 61

Query: 211 QLTRPGISLYGGTDKIN 227
            L RPG++ YG T    
Sbjct: 62  DLVRPGLAAYGMTPVPQ 78


>gi|254410610|ref|ZP_05024389.1| Alanine racemase, N-terminal domain family [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182816|gb|EDX77801.1| Alanine racemase, N-terminal domain family [Microcoleus
           chthonoplastes PCC 7420]
          Length = 373

 Score = 66.2 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 117/356 (32%), Gaps = 57/356 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEK----IAPALYNAGVQD 59
             R++I L+ +++N   +  L G+       V K              I  A+   GV+ 
Sbjct: 5   MPRIEISLSQIRDNARMLCELYGHRGISLMGVSKA-------VLGEPSIVEAMIQGGVKF 57

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII--FDTNLIPVISSVPQLTFYSKLMS 117
              + +E   K++      +  +L       E ++   D +L   I ++ QL++Y+K+  
Sbjct: 58  IADSRIENIQKMKNAGISTQFVLLRTPFSQAEAVVTSVDISLNTEIETIKQLSYYAKIH- 116

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
              +H   + V+ G  R G+   +   F     +    ++  I  +LAC         ++
Sbjct: 117 -NRNHQIIVMVELGDLREGVLPGDLSQFIRKILSLSRIKIVGIGCNLACYGGVKPDKKNM 175

Query: 178 QLERFRTLISHYKGIE---------ASLASSSGILLGPNYHF----QLTRPGISLYGGTD 224
                  L     GI+          S  +S+      +  +       R G S+  G +
Sbjct: 176 -----HKLSELVNGIQKEFQINLEIISGGNSANYEWYKSAQYIGNINNLRLGESILLGRE 230

Query: 225 KINKSHPMQT---VVTAEARIILIRK---ALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
            +N+              A +I  +       GE+                     ++D 
Sbjct: 231 TVNRKAIPGLHTEAFKLVAEVIESKTKPSLPFGEI--CQDAF--------GNVPS-FSD- 278

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
               +S           +          + ILG  + D  + D   + +++VGD +
Sbjct: 279 --RGISQRVIIALGRQDVLVSSLKSKKKLEILGA-SSDHIILD-GKNHNLQVGDEV 330


>gi|322806269|emb|CBZ03837.1| putative cytoplasmic protein [Clostridium botulinum H04402 065]
          Length = 353

 Score = 66.2 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 123/366 (33%), Gaps = 52/366 (14%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            + R+++D   ++ N   +         +  AV K      G  KIA A+    V     
Sbjct: 2   SYPRVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEKVDILAD 58

Query: 63  TSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGV 120
           + +E    L+          +L      Q + +     I ++S +  +   S + +    
Sbjct: 59  SRIE---NLKKLVHISLPKMLLRLPMISQVEEVVKYTDISLVSDIITIRELSREAIKQNK 115

Query: 121 SHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQ 178
            H   L +D G  R G  + +E         N K  +L  I ++L+C         N  Q
Sbjct: 116 IHSIILMIDLGDLREGIFNEEEIYIAVKEILNFKNVKLMGIGTNLSCYGGVIPTYENLSQ 175

Query: 179 LERFRTLISHYKGIE---ASLASSSGILLGPNYHF----QLTRPGISL---YGGTDKINK 228
           L   +  I +   I+    S  +S  I L  +          R G S+    G  D+  +
Sbjct: 176 LVNIKKNIENKFNIKIEVISGGNSGSISLFKDNKMPQEINQLRLGASISLGIGLNDEHIE 235

Query: 229 SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGYPL 281
              ++      A I+ ++       G +           +       A+ AIG  D  P 
Sbjct: 236 PL-LKDAFKLVAEIVEVKNKPSVPIGTIGLDAFGNKPFFEDKGIMKRAICAIGRQDISPD 294

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---F 337
            L  +D   S                 +LG  + D  + DIT+     ++GD I+    F
Sbjct: 295 NLIPIDDNIS-----------------VLGA-SSDHLLLDITNCNKDYKIGDKIEFNVTF 336

Query: 338 GPDIKL 343
           G  + +
Sbjct: 337 GGCLSV 342


>gi|314969166|gb|EFT13264.1| alanine racemase protein [Propionibacterium acnes HL037PA1]
          Length = 362

 Score = 65.8 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 126/362 (34%), Gaps = 50/362 (13%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM--NALSGNARTAAV--VKDNAYGLGCEKIA-PALYNA 55
           M+ +   RL+I    +++N  ++         + AAV  V      L    +   AL + 
Sbjct: 1   MNRSTP-RLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV------LHAHPVLLQALEDT 53

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           G+     + ++   ++          +L                I + SS+  +T  S+ 
Sbjct: 54  GITMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEA 113

Query: 116 M-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDP 170
               G  H   + VD G  R G+     +D   ++       +  + ++LAC        
Sbjct: 114 AVRAGTRHGVIVMVDVGDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGGVQPSV 173

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLYGGTDKI 226
            +    VQL       +  +    S  +S+ + L             R G ++  G + +
Sbjct: 174 ENMTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTL 233

Query: 227 NKSHPMQT---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI-AVAAIGYA 276
           ++S   QT    V   A II + +      G      +G       R   + A+  +G  
Sbjct: 234 DRSPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQ 293

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQ 335
           D  P  L+ +D  +                  +LG  + D  + D+TD S S+E+G  ++
Sbjct: 294 DVNPSDLAPVDPGNI-----------------VLGA-SSDHIIVDMTDSSESVEIGTEVR 335

Query: 336 IF 337
            +
Sbjct: 336 FW 337


>gi|168179710|ref|ZP_02614374.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           NCTC 2916]
 gi|182669204|gb|EDT81180.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           NCTC 2916]
          Length = 353

 Score = 65.8 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 124/366 (33%), Gaps = 52/366 (14%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            + R+++D   ++ N   +         +  AV K      G  KIA A+    V     
Sbjct: 2   SYPRVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEKVDILAD 58

Query: 63  TSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGV 120
           + +E    L+          +L      Q + +     I ++S +  +   S + +    
Sbjct: 59  SRIE---NLKKLVHINLPKMLLRLPMISQVEEVVKYTDISLVSDIITIRELSREAIKQNK 115

Query: 121 SHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQ 178
            H   L +D G  R G+  +E +        N K  +L  I ++L+C         N  Q
Sbjct: 116 IHSIILMIDLGDLREGIFNEEEIYITVKEILNFKNVKLMGIGTNLSCYGGVIPTYENLSQ 175

Query: 179 LERFRTLISHYKGIE---ASLASSSGILLGPNYHF----QLTRPGISL---YGGTDKINK 228
           L   +  I +   I+    S  +S  I L  +          R G S+    G  D+  +
Sbjct: 176 LVNIKKNIENKFNIKIEVISGGNSGSISLFKDNKMPQEINQLRLGASISLGIGLNDEHIE 235

Query: 229 SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGYPL 281
              ++      A I+ ++       G +           +       A+ AIG  D  P 
Sbjct: 236 PL-LKDAFKLVAEIVEVKNKPSVPIGTIGLDAFGNKPFFEDKGIMKRAICAIGRQDISPD 294

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---F 337
            L  +D   S                 +LG  + D  + DIT+     ++GD I+    F
Sbjct: 295 NLIPIDDNIS-----------------VLGA-SSDHLLLDITNCNKDYKIGDKIEFNVTF 336

Query: 338 GPDIKL 343
           G  + +
Sbjct: 337 GGCLSV 342


>gi|50843719|ref|YP_056946.1| amino acid racemase [Propionibacterium acnes KPA171202]
 gi|289424481|ref|ZP_06426264.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289427473|ref|ZP_06429186.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|295131808|ref|YP_003582471.1| alanine racemase [Propionibacterium acnes SK137]
 gi|50841321|gb|AAT83988.1| amino acid racemase [Propionibacterium acnes KPA171202]
 gi|289155178|gb|EFD03860.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289159403|gb|EFD07594.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|291377238|gb|ADE01093.1| alanine racemase [Propionibacterium acnes SK137]
 gi|313765110|gb|EFS36474.1| alanine racemase protein [Propionibacterium acnes HL013PA1]
 gi|313771045|gb|EFS37011.1| alanine racemase protein [Propionibacterium acnes HL074PA1]
 gi|313806767|gb|EFS45265.1| alanine racemase protein [Propionibacterium acnes HL087PA2]
 gi|313812017|gb|EFS49731.1| alanine racemase protein [Propionibacterium acnes HL083PA1]
 gi|313815642|gb|EFS53356.1| alanine racemase protein [Propionibacterium acnes HL059PA1]
 gi|313817559|gb|EFS55273.1| alanine racemase protein [Propionibacterium acnes HL046PA2]
 gi|313821614|gb|EFS59328.1| alanine racemase protein [Propionibacterium acnes HL036PA1]
 gi|313824440|gb|EFS62154.1| alanine racemase protein [Propionibacterium acnes HL036PA2]
 gi|313826787|gb|EFS64501.1| alanine racemase protein [Propionibacterium acnes HL063PA1]
 gi|313832451|gb|EFS70165.1| alanine racemase protein [Propionibacterium acnes HL007PA1]
 gi|313833426|gb|EFS71140.1| alanine racemase protein [Propionibacterium acnes HL056PA1]
 gi|314916131|gb|EFS79962.1| alanine racemase protein [Propionibacterium acnes HL005PA4]
 gi|314917393|gb|EFS81224.1| alanine racemase protein [Propionibacterium acnes HL050PA1]
 gi|314921734|gb|EFS85565.1| alanine racemase protein [Propionibacterium acnes HL050PA3]
 gi|314926090|gb|EFS89921.1| alanine racemase protein [Propionibacterium acnes HL036PA3]
 gi|314930664|gb|EFS94495.1| alanine racemase protein [Propionibacterium acnes HL067PA1]
 gi|314955412|gb|EFS99817.1| alanine racemase protein [Propionibacterium acnes HL027PA1]
 gi|314959411|gb|EFT03513.1| alanine racemase protein [Propionibacterium acnes HL002PA1]
 gi|314961737|gb|EFT05838.1| alanine racemase protein [Propionibacterium acnes HL002PA2]
 gi|314975116|gb|EFT19211.1| alanine racemase protein [Propionibacterium acnes HL053PA1]
 gi|314977526|gb|EFT21621.1| alanine racemase protein [Propionibacterium acnes HL045PA1]
 gi|314979916|gb|EFT24010.1| alanine racemase protein [Propionibacterium acnes HL072PA2]
 gi|314985127|gb|EFT29219.1| alanine racemase protein [Propionibacterium acnes HL005PA1]
 gi|314986878|gb|EFT30970.1| alanine racemase protein [Propionibacterium acnes HL005PA2]
 gi|314990741|gb|EFT34832.1| alanine racemase protein [Propionibacterium acnes HL005PA3]
 gi|315082993|gb|EFT54969.1| alanine racemase protein [Propionibacterium acnes HL027PA2]
 gi|315086526|gb|EFT58502.1| alanine racemase protein [Propionibacterium acnes HL002PA3]
 gi|315087930|gb|EFT59906.1| alanine racemase protein [Propionibacterium acnes HL072PA1]
 gi|315096843|gb|EFT68819.1| alanine racemase protein [Propionibacterium acnes HL038PA1]
 gi|315099426|gb|EFT71402.1| alanine racemase protein [Propionibacterium acnes HL059PA2]
 gi|315102402|gb|EFT74378.1| alanine racemase protein [Propionibacterium acnes HL046PA1]
 gi|315109679|gb|EFT81655.1| alanine racemase protein [Propionibacterium acnes HL030PA2]
 gi|327333045|gb|EGE74777.1| amino acid racemase [Propionibacterium acnes HL096PA2]
 gi|327334038|gb|EGE75753.1| amino acid racemase [Propionibacterium acnes HL096PA3]
 gi|327444334|gb|EGE90988.1| alanine racemase protein [Propionibacterium acnes HL013PA2]
 gi|327446807|gb|EGE93461.1| alanine racemase protein [Propionibacterium acnes HL043PA2]
 gi|327448753|gb|EGE95407.1| alanine racemase protein [Propionibacterium acnes HL043PA1]
 gi|327455094|gb|EGF01749.1| alanine racemase protein [Propionibacterium acnes HL087PA3]
 gi|327456230|gb|EGF02885.1| alanine racemase protein [Propionibacterium acnes HL083PA2]
 gi|328755929|gb|EGF69545.1| alanine racemase protein [Propionibacterium acnes HL087PA1]
 gi|328757655|gb|EGF71271.1| alanine racemase protein [Propionibacterium acnes HL020PA1]
 gi|328759000|gb|EGF72616.1| alanine racemase protein [Propionibacterium acnes HL025PA2]
 gi|328759900|gb|EGF73489.1| amino acid racemase [Propionibacterium acnes HL099PA1]
 gi|332676673|gb|AEE73489.1| putative amino acid racemase [Propionibacterium acnes 266]
          Length = 362

 Score = 65.8 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 126/362 (34%), Gaps = 50/362 (13%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM--NALSGNARTAAV--VKDNAYGLGCEKIA-PALYNA 55
           M+ +   RL+I    +++N  ++         + AAV  V      L    +   AL + 
Sbjct: 1   MNRSTP-RLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV------LHAHPVLLQALEDT 53

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           G+     + ++   ++          +L                I + SS+  +T  S+ 
Sbjct: 54  GITMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEA 113

Query: 116 M-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDP 170
               G  H   + VD G  R G+     +D   ++       +  + ++LAC        
Sbjct: 114 AVRAGTRHGVIVMVDVGDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGGVQPSV 173

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLYGGTDKI 226
            +    VQL       +  +    S  +S+ + L             R G ++  G + +
Sbjct: 174 ENMTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTL 233

Query: 227 NKSHPMQT---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI-AVAAIGYA 276
           ++S   QT    V   A II + +      G      +G       R   + A+  +G  
Sbjct: 234 DRSPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQ 293

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQ 335
           D  P  L+ +D  +                  +LG  + D  + D+TD S S+E+G  ++
Sbjct: 294 DVNPSDLAPVDPGNI-----------------VLGA-SSDHLIVDMTDSSESVEIGTEVR 335

Query: 336 IF 337
            +
Sbjct: 336 FW 337


>gi|315107296|gb|EFT79272.1| alanine racemase protein [Propionibacterium acnes HL030PA1]
          Length = 362

 Score = 65.8 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 126/362 (34%), Gaps = 50/362 (13%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM--NALSGNARTAAV--VKDNAYGLGCEKIA-PALYNA 55
           M+ +   RL+I    +++N  ++         + AAV  V      L    +   AL + 
Sbjct: 1   MNRSTP-RLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV------LHAHPVLLQALEDT 53

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           G+     + ++   ++          +L                I + SS+  +T  S+ 
Sbjct: 54  GITMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEA 113

Query: 116 M-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDP 170
               G  H   + VD G  R G+     +D   ++       +  + ++LAC        
Sbjct: 114 AVRAGTRHGVIVMVDVGDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGRVQPSV 173

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLYGGTDKI 226
            +    VQL       +  +    S  +S+ + L             R G ++  G + +
Sbjct: 174 ENMTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTL 233

Query: 227 NKSHPMQT---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI-AVAAIGYA 276
           ++S   QT    V   A II + +      G      +G       R   + A+  +G  
Sbjct: 234 DRSPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQ 293

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQ 335
           D  P  L+ +D  +                  +LG  + D  + D+TD S S+E+G  ++
Sbjct: 294 DVNPSDLAPVDPGNI-----------------VLGA-SSDHLIVDMTDSSESVEIGTEVR 335

Query: 336 IF 337
            +
Sbjct: 336 FW 337


>gi|218515609|ref|ZP_03512449.1| alanine racemase protein [Rhizobium etli 8C-3]
          Length = 68

 Score = 65.8 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 9  LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN 54
          L IDL AL  N+  + ++    R  AVVK +AYGLG E++A  LY+
Sbjct: 23 LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYD 68


>gi|294630313|ref|ZP_06708873.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292833646|gb|EFF91995.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 343

 Score = 65.8 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 104/325 (32%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAARIKDW-FGGDLLVLTPYRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SS+  +          V     ++V +   R G++ QE          
Sbjct: 85  PVPLPDRVIRSVSSIDGVYGL-------VGARVVIEVMSSMKRHGVTEQELPQLQSAI-- 135

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL------- 204
            +  +L     HL       S      +     L +    +     S             
Sbjct: 136 -ENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKAEELVRLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+  R G  L+ G     +             ++ + +   G+   Y  Q K   
Sbjct: 195 FPQTRFR-ARIGTRLWLGDHDATEYRGA---------VLDVTRVAKGDRFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGFLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWGGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  +  D+   +VGD + 
Sbjct: 303 PPHMQVSILFVPSDAPEPKVGDELV 327


>gi|239930199|ref|ZP_04687152.1| hypothetical protein SghaA1_18362 [Streptomyces ghanaensis ATCC
           14672]
 gi|291438542|ref|ZP_06577932.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341437|gb|EFE68393.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 343

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 108/325 (33%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAARIKDW-FSGDLLVLTPYRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SSV  +          V     ++V +   R G+S Q+          
Sbjct: 85  PVPLPDRVIRSVSSVDGVYGL-------VGARVVIEVMSSMKRHGISEQDLPQLHAAI-- 135

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS--SGILL----- 204
            +  +L     HL       S      +     L +    +     S   +  L      
Sbjct: 136 -ENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKADELARLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+  R G  L+ G  +  +             ++ + +   G+   Y  Q K   
Sbjct: 195 FPQTRFR-ARIGTRLWLGDHEATEYRGA---------VLDVTRVAKGDRFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGFLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWGGKQRWFAE 302

Query: 314 --TMDMTMFDI-TDSLSIEVGDYIQ 335
              M +++  + TD+   +VG+ + 
Sbjct: 303 PPHMQVSILFVPTDAPEPKVGEELV 327


>gi|313813900|gb|EFS51614.1| alanine racemase protein [Propionibacterium acnes HL025PA1]
          Length = 362

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 126/362 (34%), Gaps = 50/362 (13%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM--NALSGNARTAAV--VKDNAYGLGCEKIA-PALYNA 55
           M+ +   RL+I    +++N  ++         + AAV  V      L    +   AL + 
Sbjct: 1   MNRSTP-RLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV------LHAHPVLLQALEDT 53

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           G+     + ++   ++          +L                I + SS+  +T  S+ 
Sbjct: 54  GITMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEA 113

Query: 116 M-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDP 170
               G  H   + VD G  R G+     +D   ++       +  + ++LAC        
Sbjct: 114 AVRAGTRHGVIVMVDVGDLREGVWPDHLVDVVSSATALPGIDVKGVGTNLACYGGVQPSV 173

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLYGGTDKI 226
            +    VQL       +  +    S  +S+ + L             R G ++  G + +
Sbjct: 174 ENMTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSKINNLRIGEAIILGRNTL 233

Query: 227 NKSHPMQT---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI-AVAAIGYA 276
           ++S   QT    V   A II + +      G      +G       R   + A+  +G  
Sbjct: 234 DRSPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQ 293

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQ 335
           D  P  L+ +D  +                  +LG  + D  + D+TD S S+E+G  ++
Sbjct: 294 DVNPSDLAPVDPGNI-----------------VLGA-SSDHLIVDMTDSSESVEIGTEVR 335

Query: 336 IF 337
            +
Sbjct: 336 FW 337


>gi|297200915|ref|ZP_06918312.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197716413|gb|EDY60447.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 343

 Score = 65.1 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 100/325 (30%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAARIKDW-FGGDLLVLTPYRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SS+  +          V     ++V +   R G+S QE          
Sbjct: 85  PVPLPDRVIRSVSSIDGVYGL-------VGARVVIEVMSSMKRHGISEQELPQLHAAI-- 135

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL------- 204
            +  +L     HL       S      +     L +    +     S             
Sbjct: 136 -ENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKAEDLARLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+         G  D                 ++ + +   G+   Y  Q K   
Sbjct: 195 FPQTRFRARIGTRLWLGDHDSTEY----------RGAVLDVTRVSKGDRFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGFLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWGGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  +  D+   +VG+ + 
Sbjct: 303 PPHMQVSILFVPSDAPEPKVGEELV 327


>gi|21222310|ref|NP_628089.1| hypothetical protein SCO3903 [Streptomyces coelicolor A3(2)]
 gi|256786589|ref|ZP_05525020.1| hypothetical protein SlivT_19041 [Streptomyces lividans TK24]
 gi|289770481|ref|ZP_06529859.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|4808399|emb|CAB42731.1| hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289700680|gb|EFD68109.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 343

 Score = 64.7 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 106/325 (32%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++       + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAARIKD-FFGGDLLVLTPYRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     ++  +SS+  +          V     ++V +   R G+S Q+          
Sbjct: 85  PVPLPDRVVRSVSSIDGVYGL-------VGARVVIEVMSSMKRHGISEQDLPQLHAAI-- 135

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS--SGILL----- 204
            +  +L     HL       S      +     L +    +     S   +  L      
Sbjct: 136 -ENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKADELARLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+  R G  L+ G  +  +             ++ + +   GE   Y  Q K   
Sbjct: 195 FPQTRFR-ARIGTRLWLGDHEATEYRGA---------VLDVTRVAKGERFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGFLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWSGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  +  D+   +VGD + 
Sbjct: 303 PPHMQVSILFVPSDASEPQVGDELV 327


>gi|330685135|gb|EGG96799.1| alanine racemase, N-terminal domain protein [Staphylococcus
           epidermidis VCU121]
          Length = 359

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 123/344 (35%), Gaps = 51/344 (14%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +KI+L+ ++ N   +  +  + + +   V+K  A   G  +I   L   G+  F  + +E
Sbjct: 4   IKINLSKIQYNAKVLQTILDAKHIQFTPVIKSIA---GDLQIVQKLIELGITHFADSRLE 60

Query: 67  EGVKLRLYT-PQARIFVLYGIHPGQEKIIF---DTNLIPVISSVPQLTFYSKLMSCGVSH 122
               +R  T       +L      Q   +      ++   ++++ +L   ++ +   + H
Sbjct: 61  ---NIRQLTNFDCSFTILRSTQLSQLDNMIKDTQISIQTELNTIIELNRIAQHL--NIKH 115

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-LER 181
              L VD    R G+   + + +     N    QL  +  +  C    S   + V  + +
Sbjct: 116 QVILMVDWKDGREGVLTYDVVKYIETILNLSHIQLVGVSFNFMCFKSSSPIEDDVFMINK 175

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHF------QLTRPGISLYGGTDKINK---SHPM 232
           F + I    G    + S     + P   +         R G +L+ G D       SH  
Sbjct: 176 FVSAIEREIGYRMKIVSGGNSSMLPLTMYNDLGKINELRIGETLFRGVDTTTDKPVSHLY 235

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           Q  +  EA I+ I+  +              +  L A+  IGY D         D+ H  
Sbjct: 236 QDAIVLEAEILEIKPRMNSH---------TKQSYLQAIVDIGYID--------TDTTHIS 278

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
            +            + I+G  + D  M D+ +    ++G+ IQ 
Sbjct: 279 PIA---------NDIQIIGA-SSDHLMIDLNNQDHYQIGNKIQF 312


>gi|282852965|ref|ZP_06262302.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|282582418|gb|EFB87798.1| alanine racemase, N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|314983015|gb|EFT27107.1| alanine racemase protein [Propionibacterium acnes HL110PA3]
 gi|315091522|gb|EFT63498.1| alanine racemase protein [Propionibacterium acnes HL110PA4]
          Length = 362

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 125/362 (34%), Gaps = 50/362 (13%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSM--NALSGNARTAAV--VKDNAYGLGCEKIA-PALYNA 55
           M+ +   RL+I    +++N  ++         + AAV  V      L    +   AL + 
Sbjct: 1   MNRSTP-RLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV------LHAHPVLLQALEDT 53

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           GV     + ++   ++          +L                I + SS+  +T  S+ 
Sbjct: 54  GVTMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEA 113

Query: 116 M-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDP 170
               G  H   + VD    R G+     +D   ++       +  + ++LAC        
Sbjct: 114 AVRAGTHHGVIVMVDVSDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGGVQPSI 173

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLYGGTDKI 226
            +    VQL       +  +    S  +S+ + L             R G ++  G + +
Sbjct: 174 ENMTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTL 233

Query: 227 NKSHPMQT---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI-AVAAIGYA 276
           ++S   QT    V   A II + +      G      +G       R   + A+  +G  
Sbjct: 234 DRSPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQ 293

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQ 335
           D  P  L+ +D  H                  +LG  + D  + D+TD S S+E+G  ++
Sbjct: 294 DVNPSDLAPVDPGHI-----------------VLGA-SSDHLIVDMTDSSESVEIGTEVR 335

Query: 336 IF 337
            +
Sbjct: 336 FW 337


>gi|150390137|ref|YP_001320186.1| alanine racemase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949999|gb|ABR48527.1| alanine racemase domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 364

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 128/373 (34%), Gaps = 73/373 (19%)

Query: 1   MHSNEF-LRLKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPA 51
           M S++   ++ IDL  L++N   M         A++G  +            G  +IA A
Sbjct: 1   MESDKMNPKVTIDLAKLRHNARVMTEKCNEYGIAIAGVTKVFG---------GRPEIAQA 51

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF 111
           + + G+Q    + VE   K++  +    +  L  I    +  +     I + S V  +  
Sbjct: 52  MIDGGIQYLADSRVENLKKMKDLSLPKILLRLPMISRVDD--VVKYCDISLNSEVETIIA 109

Query: 112 YSKLMSCG-VSHPYALQVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSLIISHLAC--A 167
            S+       +H   L VD G  R G+   +AL        N K  ++  I ++L C   
Sbjct: 110 LSQAAEKQHKTHKIILMVDLGDLREGIFDSQALKLALDEIKNLKGIKVVGIGTNLTCYGG 169

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASL---------ASSSGILLGPNYHF----QLTR 214
             P         E    LI++   IEA L          +SS I +           L R
Sbjct: 170 VIPDE-------ENLGRLIAYASEIEAVLGTKLEIISGGNSSSIYMVQEGRMLEEVNLLR 222

Query: 215 PGISLYGGTDKINK---SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTR 264
            G ++  GT+           Q +   EA II I++      G++           +   
Sbjct: 223 LGEAIVLGTESAYGNVIPGTHQDIFQLEAEIIEIKEKPSIPIGKIGMDAFGNKPSFEDKG 282

Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324
               A+ A+G              +            +    V ILG  + D  + DITD
Sbjct: 283 VRKRAILAVG--------------KQDIGTHAIRPVNVN---VIILGG-SSDHLIVDITD 324

Query: 325 S-LSIEVGDYIQI 336
             +  ++G  +  
Sbjct: 325 CDMQHQIGSTLTF 337


>gi|119715651|ref|YP_922616.1| alanine racemase domain-containing protein [Nocardioides sp. JS614]
 gi|119536312|gb|ABL80929.1| alanine racemase domain protein [Nocardioides sp. JS614]
          Length = 386

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 42/263 (15%)

Query: 11  IDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +DL  ++ N  SM +L+         +A++               IA    +AG     +
Sbjct: 38  VDLDQVERNIASMASLAKRRGMTLRPHAKS----------HKSTFIADLQLDAGATGLCL 87

Query: 63  TSVEEGVKLRLYTPQARIF---VLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLM-S 117
            +  E   +  +     +    VL      +   I +   L  V  SV   + YS L   
Sbjct: 88  ATAGEAEVMWRHGVADLLLAYPVLGRAKLDRLAPIVEAGSLTMVADSVEVASGYSDLACR 147

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-------- 169
            G      +++D+G  R G+  ++A             ++  I++H   +          
Sbjct: 148 TGREIAVLIEIDSGMRRAGVPPEQAGAVAVEVDRLPGLRVRGILTHAGHSHAALDQRGIE 207

Query: 170 --PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ----LTRPGISLYGGT 223
                 V ++Q  R         G+   + S+   +  P           RPG  +Y   
Sbjct: 208 EVARDEVRAMQQAR---ETVERAGVTVEVVSAGSTITTPYLSSDDGITEVRPGTYVYNDL 264

Query: 224 DKINK--SHPMQTVVTAEARIIL 244
             +++    P Q  VT  A ++ 
Sbjct: 265 RTLSRYACTPDQLAVTMLATVVS 287


>gi|332978060|gb|EGK14798.1| hypothetical protein HMPREF9374_0084 [Desmospora sp. 8437]
          Length = 391

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 97/290 (33%), Gaps = 45/290 (15%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL-Y 74
            ++    M  L        V+K N YG G E +A A   +G ++  V +VEE  +L   +
Sbjct: 13  FRH-MEHMEELYPG--CVPVIKGNGYGFGNEVLADAARKSGKREIAVGTVEEARQLEATH 69

Query: 75  TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL----------MSCGVSHPY 124
                I VL  +     +    +  +  + S   L F              M        
Sbjct: 70  RFDQMI-VLTPVMSELMEADLVSERVYTVGSRDHLQFLVTAVDGLLSRGTGMEEPFRLKL 128

Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLE 180
            L+  +   R G SL++A    ++   +   ++  ++  +  H           +  + +
Sbjct: 129 LLKCQSPMKRYGFSLEDAGLLPEWIQRAETDRVKIEIKGLSIHFP----KERTTSQAKEK 184

Query: 181 RFRTLISHYKGIEA--------SLASSSGILL---GPNYHFQLTRPGISLYGGTDKINKS 229
                +   K +           L+S     L    P   F + R G  L+         
Sbjct: 185 CIGDWLETMKRVGLPSGRMYVSHLSSEQYHQLTEKWPEVRFAM-RLGTDLWLAD------ 237

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
              ++ V  ++ ++ ++    GE   Y  Q +  R+  +   A G A+G 
Sbjct: 238 ---KSFVETKSTVLDVQPIRRGERFGYKQQ-RACRNGHLVFLAGGTANGV 283


>gi|187779380|ref|ZP_02995853.1| hypothetical protein CLOSPO_02976 [Clostridium sporogenes ATCC
           15579]
 gi|187773005|gb|EDU36807.1| hypothetical protein CLOSPO_02976 [Clostridium sporogenes ATCC
           15579]
          Length = 353

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 115/365 (31%), Gaps = 50/365 (13%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            + R+++D   ++ N   +         +  AV K      G  KIA  +    V     
Sbjct: 2   SYPRVEVDTKKIRYNTKVLVEECKKRGIKVTAVTKTF---CGNPKIAKVIAEEKVDILAD 58

Query: 63  TSVEEGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
           + +E    L+  T       +L      Q K +     I ++S +  +   SK  +    
Sbjct: 59  SRIE---NLKKLTHINLPKMLLRLPMISQVKEVIKYADISLVSDIITIRELSKEAIEQNK 115

Query: 121 SHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQ 178
            H   L +D G  R G  + +E         N K  +L  I ++L+C         N  Q
Sbjct: 116 IHNIILMIDLGDLREGIFNEEEIYTTVEEILNLKGIKLMGIGTNLSCYGGVIPTYENLSQ 175

Query: 179 LERFRTLISHYKGIE---ASLASSSGILLGPNYHF----QLTRPGISLYG--GTDKINKS 229
           L   +  I     I+    S  +S  I L             R G S+    G +  +  
Sbjct: 176 LVNIKKNIESKFNIKIEVISGGNSGCISLFKENKVPKEINQLRLGASISLGIGLNDGHIE 235

Query: 230 HPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             ++        I+ ++       G +           +       A+ AIG        
Sbjct: 236 PLLKDAFKLVVEIVEVKNKPSVPIGSIGLDAFGNKPFFEDKGIMKRAICAIG-------- 287

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---FG 338
              +  ++   +                 + + D  + DIT+     ++GD ++    FG
Sbjct: 288 RQDISPDNLIPIDDKIAVL----------EASSDHLLLDITNCNKDYKIGDKVEFNVTFG 337

Query: 339 PDIKL 343
             + +
Sbjct: 338 GCLSI 342


>gi|182437470|ref|YP_001825189.1| hypothetical protein SGR_3677 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|239942694|ref|ZP_04694631.1| hypothetical protein SrosN15_17004 [Streptomyces roseosporus NRRL
           15998]
 gi|239989153|ref|ZP_04709817.1| hypothetical protein SrosN1_17757 [Streptomyces roseosporus NRRL
           11379]
 gi|291446158|ref|ZP_06585548.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|326778125|ref|ZP_08237390.1| alanine racemase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465986|dbj|BAG20506.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|291349105|gb|EFE76009.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|326658458|gb|EGE43304.1| alanine racemase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 343

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 103/328 (31%), Gaps = 50/328 (15%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLADETIRFGSDTLAVGTTYEAARIKDW-FSGDLLVLTPFRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SSV  +          V     ++  +   R G+  +E         +
Sbjct: 85  PVPLPDRVIRSVSSVDGVHAL-------VGARVVIECMSSMKRHGVKEEELGQLHAAIED 137

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL------- 204
               +L     HL       S      +     L +    +     S    L        
Sbjct: 138 ---VRLEGFALHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSH---LRAEELARL 191

Query: 205 ---GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
               P   F+  R G  L+ G  +  +             ++ +   + G+   Y  Q K
Sbjct: 192 QQQFPQTRFR-ARIGTRLWLGDHEATEYRGA---------VLDVTPVVKGDRFGYRQQ-K 240

Query: 262 LTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI-- 313
              D  + V A G + G     P  L G+    +  V   G   +   + P +  GK   
Sbjct: 241 AASDGWLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWAGKQRW 299

Query: 314 -----TMDMTMFDIT-DSLSIEVGDYIQ 335
                 M +++  +  D+    VGD + 
Sbjct: 300 FAEPPHMQVSILFVPSDAQEPRVGDELV 327


>gi|297158767|gb|ADI08479.1| hypothetical protein SBI_05359 [Streptomyces bingchenggensis BCW-1]
          Length = 343

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 101/335 (30%), Gaps = 47/335 (14%)

Query: 22  SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF 81
            +    G      V K N YG G E++A      G     V +  E  +++ Y     + 
Sbjct: 19  VIQQFPG---IVPVCKGNGYGFGHERLAEEASRIGSDILAVGTTYEAARMKDY-FSGDLL 74

Query: 82  VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141
           VL     G+E +     +I  +SSV  +          V+    ++V +   R G++  +
Sbjct: 75  VLTPFRRGEEPVPLPDRVIRSVSSVDGVYGL-------VNARVVIEVMSSMKRHGIAEAD 127

Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSG 201
                      +  +L     HL              +     L +    +     S   
Sbjct: 128 LPKLHAAI---ENVRLEGFAIHLPLDRTDGLDAVEEVIAWMDRLRAARLPLHTMFVSHLK 184

Query: 202 ILL-------GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELV 254
                      P   F+         G  D                 ++ + +   G+  
Sbjct: 185 SEELARLQQQFPQTRFRARIGTRLWLGDHDSTQY----------RGAVLDVTRVAKGDRF 234

Query: 255 SYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
            Y  QK  + D  + V A G + G     P  + G+    +  V   G   +   + P +
Sbjct: 235 GYRQQKTAS-DGYLVVVAGGTSHGVGLEAPKAVHGVMPR-AKGVARAGLATVNRNLSPFV 292

Query: 311 --GKI-------TMDMTMFDIT-DSLSIEVGDYIQ 335
             GK         M +++  +  D    +VGD + 
Sbjct: 293 WAGKQRWFAEPPHMQVSILFVPGDVAPPQVGDELV 327


>gi|302520490|ref|ZP_07272832.1| alanine racemase domain-containing protein [Streptomyces sp. SPB78]
 gi|318058993|ref|ZP_07977716.1| hypothetical protein SSA3_13681 [Streptomyces sp. SA3_actG]
 gi|318075519|ref|ZP_07982851.1| hypothetical protein SSA3_02062 [Streptomyces sp. SA3_actF]
 gi|333025743|ref|ZP_08453807.1| hypothetical protein STTU_3247 [Streptomyces sp. Tu6071]
 gi|302429385|gb|EFL01201.1| alanine racemase domain-containing protein [Streptomyces sp. SPB78]
 gi|332745595|gb|EGJ76036.1| hypothetical protein STTU_3247 [Streptomyces sp. Tu6071]
          Length = 343

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 111/340 (32%), Gaps = 47/340 (13%)

Query: 17  KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76
            ++ H +    G      V K N YG G E++A      G     V +  E  +++ +  
Sbjct: 14  AHHKHVLEQFPG---IVPVCKGNGYGFGHERLAEEATRFGSDMLAVGTTYEAARIKDW-F 69

Query: 77  QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLG 136
              + VL     G+E +     +I  +SSV  +          V     ++V +   R G
Sbjct: 70  SGDLLVLTPFRRGEEPVPLPDRVIRSVSSVDGVRAL-------VGARVMIEVMSSMKRHG 122

Query: 137 LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           ++  +         +    +L     HL       +      +     L      +    
Sbjct: 123 VTRSDLQALGSAIDD---VRLEGFAIHLPLDRTDGTDAVEEVIAWMDALRGARLPLHTMY 179

Query: 197 ASS--SGILL-----GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249
            S   +  L       P   F+  R G  L+ G  +                I+ + +  
Sbjct: 180 VSHVKADELARLSQQFPQTKFR-ARIGTLLWLGDHE---------ATQYRGTILDVTRVA 229

Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGY 305
            GE   Y  Q K T D  + VAA G + G     P  L G+    +  V   G   +   
Sbjct: 230 KGERFGYRQQ-KATSDGWLVVAAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRN 287

Query: 306 MVPIL--GKI-------TMDMTMFDIT-DSLSIEVGDYIQ 335
           + P +  GK         M +++  +  D+   +VG+ + 
Sbjct: 288 LSPFVHGGKQRWFAEPPHMQVSILFVPADAPEPQVGEELV 327


>gi|310657359|ref|YP_003935080.1| alanine racemase domain-containing protein [Clostridium sticklandii
           DSM 519]
 gi|308824137|emb|CBH20175.1| Alanine racemase domain protein [Clostridium sticklandii]
          Length = 364

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 122/369 (33%), Gaps = 60/369 (16%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKD-NAYGLGCEKIAPALYNAGV 57
           M +  +  L+IDL  +  N  ++ + +         VVK  ++     +++A     AG 
Sbjct: 1   MENTAYPNLQIDLKKIYQNAKNLVSFANTNGINITGVVKGSDS----SKEVAKEFIKAGC 56

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLM 116
                + +E+  KL+    +  + +L      + + +   + I + S +  L   + +  
Sbjct: 57  MGIADSRIEKLAKLKEEGIKEDMMLLRVPMLCEVEQVVRYSEISLNSEIVVLEALNIEAN 116

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLAC--ADDPSS 172
           +    H   L  D G  R G   +E L     H         +  + ++L C  A  P  
Sbjct: 117 NQNKIHKVILMADLGDLREGYIDEEELIKTALHIETKLDNLHMYGVGTNLGCFGAICPDE 176

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY-------HFQLTRPGISLYGGTDK 225
             N  +L +    IS   G +  + S       P              R G ++    D 
Sbjct: 177 S-NLGKLVQISEKISALIGRKLEIVSGGATTSLPLLFDSKMPKGINHLRVGEAMLLARDL 235

Query: 226 INKSHPMQT-----VVTAEARIILIRKALAG-------ELVSYGGQKKLTRDSLIAVAA- 272
           I+                EA++I +++  +        +      + +       A+ A 
Sbjct: 236 IDLWGYSMEGYHTDTFVLEAQVIEVKEKPSHPIGRIFVDAFGNTPEYEDKGIRKRALIAL 295

Query: 273 ----IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LS 327
               IG+ D     L G+  E S                      + D  + D+TD+   
Sbjct: 296 GKKDIGHHDSLIPKLKGITVEGS----------------------SSDHVILDVTDAVEE 333

Query: 328 IEVGDYIQI 336
           I VGD I+ 
Sbjct: 334 IHVGDIIEF 342


>gi|312144490|ref|YP_003995936.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311905141|gb|ADQ15582.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 357

 Score = 63.9 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 111/352 (31%), Gaps = 39/352 (11%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +F  + I L  ++ N   M A+    N    AVVK  A   G  K+      A +     
Sbjct: 2   DFPVIDIYLNKIEENALQMKAMLNDNNINLTAVVKGFA---GDLKVFNCFQKAAINSIAD 58

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVS 121
           + ++   K R    Q  I +L      + +         +IS +          +     
Sbjct: 59  SRLQNIKKYRAAGYQGEIMMLRIPMCSELEEAVKYIDTTLISEIETARAAAKAAVKLNKE 118

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQL 179
               + VD G  R G+  +   +           +L  I ++L C     P        +
Sbjct: 119 IKVIIMVDLGDRREGVLAENLKELAAEIIKLDGLKLDGIGTNLGCFAGVLPDEKNTKELI 178

Query: 180 ERFRTLISHY--KGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINK---SH 230
           +  + L   +  K    S  +++  +L  N          R G  +  GTD IN+   ++
Sbjct: 179 KYKKELEKEFSIKINRISAGNTATTILLNNNELSSSINNLRIGEGILLGTDIINERLFNN 238

Query: 231 PMQTVVTAEARIILIR---KALAGE--LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
                    A II ++       GE      G  + L    L                + 
Sbjct: 239 LNHYNFRLRAEIIELKAKPSNPEGEMAFGGKGRNQILKDQGL-------------RQRAI 285

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
                    + G     KG  + +LG  + D  + D+TD    I VGD +  
Sbjct: 286 AAVGKQDIDYHGLYPLDKG--IEVLGA-SSDHLIMDVTDLKRKIAVGDILTF 334


>gi|302552670|ref|ZP_07305012.1| alanine racemase domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470288|gb|EFL33381.1| alanine racemase domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 343

 Score = 63.9 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 105/325 (32%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAARIKDW-FGGDLLVLTPYRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SS+  +          V     ++V +   R G+S Q+          
Sbjct: 85  PVPLPDRVIRSVSSIDGVYGL-------VGARVVIEVMSSMKRHGISEQDLPQLHAAI-- 135

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL------- 204
            +  +L     HL       S      +     L +    +     S             
Sbjct: 136 -ENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKAEELVRLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+  R G  L+ G  +  +             ++ + +   GE   Y  Q K   
Sbjct: 195 FPQTRFR-ARIGTRLWLGDHEATEYRGA---------VLDVSRVTKGERFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGFLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWGGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  +  D+   +VG+ + 
Sbjct: 303 PPHMQVSILFVPSDAPEPKVGEELV 327


>gi|302559690|ref|ZP_07312032.1| alanine racemase domain-containing protein [Streptomyces
           griseoflavus Tu4000]
 gi|302477308|gb|EFL40401.1| alanine racemase domain-containing protein [Streptomyces
           griseoflavus Tu4000]
          Length = 343

 Score = 63.9 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 105/325 (32%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAARIKDW-FGGDLLVLTPYRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SSV  +          V     ++V +   R G+  Q+          
Sbjct: 85  PVPLPDRVIRSVSSVDGVYGL-------VGARVVIEVMSSMKRHGIGEQDLAQLHAAI-- 135

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS--SGILL----- 204
            +  +L     HL       S      +     L +    +     S   +  L      
Sbjct: 136 -ENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKADELARLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+  R G  L+ G     +             ++ + +   G+   Y  Q K   
Sbjct: 195 FPQTRFR-ARIGTRLWLGDHDATEYRGA---------VLDVTRVAKGDRFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGYLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWGGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  +  D+   +VGD + 
Sbjct: 303 PPHMQVSILFVPSDAPEPQVGDELV 327


>gi|282863342|ref|ZP_06272401.1| alanine racemase domain protein [Streptomyces sp. ACTE]
 gi|282561677|gb|EFB67220.1| alanine racemase domain protein [Streptomyces sp. ACTE]
          Length = 343

 Score = 63.5 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 106/328 (32%), Gaps = 50/328 (15%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLADETIRFGSDILAVGTTYEAARIKDW-FSGDLLVLTPFRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     ++  +SSV  +          V     ++  +   R G+  +E L   H +  
Sbjct: 85  PVPLPDRVVRSVSSVDGVHAL-------VGARVVIECMSSMKRHGVKEEE-LGLLHAAIE 136

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL------- 204
               +L     HL       S      +     L +    +     S    L        
Sbjct: 137 D--VRLEGFALHLPLDRTDGSDAVEEVIAWMDRLRAARLPLHTMFVSH---LRAEELARL 191

Query: 205 ---GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
               P   F+  R G  L+ G  +  +             ++ +   + G+   Y  Q K
Sbjct: 192 QQQFPQTRFR-ARIGTRLWLGDHEATEYRGA---------VLDVTPVVKGDRFGYRQQ-K 240

Query: 262 LTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI-- 313
              D  + V A G + G     P  L G+    +  V   G   +   + P +  GK   
Sbjct: 241 AASDGWLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWAGKQRW 299

Query: 314 -----TMDMTMFDIT-DSLSIEVGDYIQ 335
                 M +++  +  D+   +VGD + 
Sbjct: 300 FAEPPHMQVSILFVPSDAEEPKVGDELV 327


>gi|327334457|gb|EGE76168.1| amino acid racemase [Propionibacterium acnes HL097PA1]
          Length = 321

 Score = 63.1 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 104/308 (33%), Gaps = 38/308 (12%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106
           + + AL + G+     + ++   ++          +L                I + SS+
Sbjct: 4   RCSQALEDTGITMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSL 63

Query: 107 PQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA 165
             +T  S   +     H   + VD G  R G+     +D    +       +  + ++LA
Sbjct: 64  TTMTALSDAAVRARTRHGVIVMVDVGDLREGVWPDHLVDVVSAAAALPGIDIKGVGTNLA 123

Query: 166 CADDPSSHVNSV----QLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGI 217
           C       V ++    QL       +  +    S  +S+ + L             R G 
Sbjct: 124 CYGGVQPSVKNMTSLVQLRDMARAATGLELDLISGGNSANLPLMMSGTMPSEINNLRIGE 183

Query: 218 SLYGGTDKINKSHPMQT---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI 268
           ++  G + +++S   QT    V     II + +      G      +G       R + +
Sbjct: 184 AIILGRNTLDRSPWPQTRQDTVEVVTEIIELERKPSIPLGRTGEDAFGQHVTFTDRGTRL 243

Query: 269 -AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327
            A+  +G  D  P  L+ +D  H                  +LG  + D  + D+TDS  
Sbjct: 244 RAICNLGRQDVNPSDLTPVDPGHI-----------------VLGA-SSDHLIVDMTDSAE 285

Query: 328 -IEVGDYI 334
            +E+G  +
Sbjct: 286 SVEIGTEV 293


>gi|294616334|ref|ZP_06696127.1| alanine racemase [Enterococcus faecium E1636]
 gi|291590848|gb|EFF22564.1| alanine racemase [Enterococcus faecium E1636]
          Length = 48

 Score = 63.1 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           AVVK NAYG G   +A  L   GV +F V 
Sbjct: 1  MAVVKANAYGHGAIPVAKTLQKIGVMNFAVA 31


>gi|188585830|ref|YP_001917375.1| alanine racemase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350517|gb|ACB84787.1| alanine racemase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 360

 Score = 63.1 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 109/365 (29%), Gaps = 59/365 (16%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKD--------NAYGLGCEKIAP 50
           M      R++I    +  N   +   +   N     V K         +AY         
Sbjct: 1   MEIRSP-RVEIYADRIAYNVEYLQKQAAKNNISLVGVTKGVLADHQILDAY--------- 50

Query: 51  ALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT 110
                G+       ++   ++R Y    +  +L      +   + +   + + S +  L 
Sbjct: 51  --LKGGLDYLGDARIQNLKRVRDYGFSGKTLLLRAPMYSEISQVINFANVSLNSELDTLK 108

Query: 111 FY-SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
               +    G +H Y + VD G  R G+  ++   F   +   +  +   +  ++ C   
Sbjct: 109 LLDEESKKQGKTHGYIIMVDVGDRREGVLPEDVKSFVKEAIKLENVKFEGLGLNVGCFGG 168

Query: 170 PSSHVNSVQLERFRTLISHYKGIE---ASLASSSG--ILLGPNY--HFQLTRPGISLYGG 222
                 + Q+          +GIE    S  S+ G  I+            R G +   G
Sbjct: 169 VLPTTENAQILIDLKSELEQEGIEVPTISGGSTCGLNIMFHNQLPEGINQLRVGEAFLIG 228

Query: 223 TDKINK---SHPMQTVVTAEARIILIRKALAGELVSYGG-------QKKLTRDSLIAVAA 272
            D + +       Q        II I+   +      G        +         A+AA
Sbjct: 229 NDSVRETPIPGTYQDTFRLVTEIIEIKDRPSQPEGEIGKDPFGNVPEFPDRGIRKRAIAA 288

Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVG 331
           IG            D      +    +  I+G         + D  + DITD   + ++G
Sbjct: 289 IG----------KQDVAIGSLLPEDEQVTIEG--------ASSDHLILDITDSDHNYKIG 330

Query: 332 DYIQI 336
           D I  
Sbjct: 331 DEITF 335


>gi|313803214|gb|EFS44410.1| alanine racemase protein [Propionibacterium acnes HL110PA2]
 gi|313839514|gb|EFS77228.1| alanine racemase protein [Propionibacterium acnes HL086PA1]
 gi|314963986|gb|EFT08086.1| alanine racemase protein [Propionibacterium acnes HL082PA1]
 gi|315079047|gb|EFT51054.1| alanine racemase protein [Propionibacterium acnes HL053PA2]
 gi|315081463|gb|EFT53439.1| alanine racemase protein [Propionibacterium acnes HL078PA1]
 gi|327457523|gb|EGF04178.1| alanine racemase protein [Propionibacterium acnes HL092PA1]
          Length = 321

 Score = 63.1 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 104/308 (33%), Gaps = 38/308 (12%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106
           + + AL + G+     + ++   ++          +L                I + SS+
Sbjct: 4   RCSQALEDTGITMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSL 63

Query: 107 PQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA 165
             +T  S   +     H   + VD G  R G+     +D    +       +  + ++LA
Sbjct: 64  TTMTALSDAAVRARTRHGVIVMVDVGDLREGVWPDHLVDVVSAAAALPGIDIKGVGTNLA 123

Query: 166 CADDPSSHVNSV----QLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGI 217
           C       V ++    QL       +  +    S  +S+ + L             R G 
Sbjct: 124 CYGGVQPSVKNMTRLVQLRDMARAATGLELDLISGGNSANLPLMMSGTMPSEINNLRIGE 183

Query: 218 SLYGGTDKINKSHPMQT---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI 268
           ++  G + +++S   QT    V     II + +      G      +G       R + +
Sbjct: 184 AIILGRNTLDRSPWPQTRQDTVEVVTEIIELERKPSIPLGRTGEDAFGQHVTFTDRGTRL 243

Query: 269 -AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327
            A+  +G  D  P  L+ +D  H                  +LG  + D  + D+TDS  
Sbjct: 244 RAICNLGRQDVNPSDLTPVDPGHI-----------------VLGA-SSDHLIVDMTDSAE 285

Query: 328 -IEVGDYI 334
            +E+G  +
Sbjct: 286 SVEIGTEV 293


>gi|313792680|gb|EFS40766.1| alanine racemase protein [Propionibacterium acnes HL110PA1]
          Length = 321

 Score = 63.1 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 104/308 (33%), Gaps = 38/308 (12%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106
           + + AL + G+     + ++   ++          +L                I + SS+
Sbjct: 4   RCSQALEDTGITMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSL 63

Query: 107 PQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA 165
             +T  S   +     H   + VD G  R G+     +D    +       +  + ++LA
Sbjct: 64  TTMTALSDAAVRARTRHGVIVMVDVGDLREGVWPDHLVDVVSAAAALPGIDIKGVGTNLA 123

Query: 166 CADDPSSHVNSV----QLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGI 217
           C       V ++    QL       +  +    S  +S+ + L             R G 
Sbjct: 124 CYGGVQPSVKNMTRLVQLRDMARAATGLELDLISGGNSANLPLMMSGTMPSEINNLRIGE 183

Query: 218 SLYGGTDKINKSHPMQT---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI 268
           ++  G + +++S   QT    V     II + +      G      +G       R + +
Sbjct: 184 AIILGRNTLDRSPWPQTRQDTVEVVTEIIELERKPSIPLGRTGEDAFGQHVTFTDRGTRL 243

Query: 269 -AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327
            A+  +G  D  P  L+ +D  H                  +LG  + D  + D+TDS  
Sbjct: 244 RAICNLGRQDVNPSDLTPVDPGHI-----------------VLGA-SSDHLIVDMTDSAE 285

Query: 328 -IEVGDYI 334
            +E+G  +
Sbjct: 286 SVEIGTEV 293


>gi|313835054|gb|EFS72768.1| alanine racemase protein [Propionibacterium acnes HL037PA2]
 gi|314929024|gb|EFS92855.1| alanine racemase protein [Propionibacterium acnes HL044PA1]
 gi|314970966|gb|EFT15064.1| alanine racemase protein [Propionibacterium acnes HL037PA3]
 gi|328905713|gb|EGG25489.1| amino acid racemase [Propionibacterium sp. P08]
          Length = 362

 Score = 63.1 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 122/355 (34%), Gaps = 49/355 (13%)

Query: 8   RLKIDLTALKNNWHSMNALSG--NARTAAV--VKDNAYGLGCEKIA-PALYNAGVQDFFV 62
           RL+I    + +N  ++         + AAV  V      L    +   AL + G+     
Sbjct: 7   RLEIFADRIHDNAQTIVNQCAEHGVQVAAVTKV------LHAHPVLLRALDDTGITMLAD 60

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVS 121
           + ++   ++          +L                I + SS+  +T  S   +  G  
Sbjct: 61  SRLQNLRQIAACGTPLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSDAAVRAGTR 120

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSSHVNSV 177
           H   + VD G  R G+     +D   ++   +   +  + ++LAC         +    V
Sbjct: 121 HGVIVMVDVGDLREGVWPDHLVDVVSSAAALRGIDVKGVGTNLACYGGVQPSVENMTRLV 180

Query: 178 QLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLYGGTDKINKSHPMQ 233
           QL       +  +    S  +S+ + L             R G ++  G + +++S   Q
Sbjct: 181 QLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTLDRSPWPQ 240

Query: 234 T---VVTAEARIILIRK---ALAGELVS--YGGQKK-LTRDSLI-AVAAIGYADGYPLTL 283
           T    V   A II + +      G      +G       R   + A+  +G  D  P  L
Sbjct: 241 TRQDAVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQDVNPSDL 300

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIF 337
           + +D  H                  +LG  + D  + D+TDS   +E+G  ++ +
Sbjct: 301 TPVDPGHI-----------------VLGA-SSDHLIVDVTDSAESVEIGTEVRFW 337


>gi|320096312|ref|ZP_08027876.1| hypothetical protein HMPREF9005_2488 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319976762|gb|EFW08536.1| hypothetical protein HMPREF9005_2488 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 67

 Score = 62.8 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 323 TDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           + +    VGD   +FG         D  A A+GT NY+++ R+G    + +
Sbjct: 10  SGAPPARVGDGAVLFGDPATGAPTADQWAAAAGTINYEVVTRLGDHIPRIH 60


>gi|254552528|ref|ZP_05142975.1| alanine racemase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 63

 Score = 62.4 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 320 FDITDSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYDLLVRIGTRYAKFY 369
            D   +L +  GD   +FGP I       D A   GT +Y+++     R  + Y
Sbjct: 4   VDWARALDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRITRTY 57


>gi|168185009|ref|ZP_02619673.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           Bf]
 gi|237795433|ref|YP_002862985.1| alanine racemase, N-terminal domain-containing protein [Clostridium
           botulinum Ba4 str. 657]
 gi|182671931|gb|EDT83892.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           Bf]
 gi|229263648|gb|ACQ54681.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           Ba4 str. 657]
          Length = 353

 Score = 62.4 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 122/366 (33%), Gaps = 52/366 (14%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            + R+++D   ++ N   +         +  AV K      G  KIA A+    V     
Sbjct: 2   SYPRVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEEVDILAD 58

Query: 63  TSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
           + +E    L+          +L      Q + +     I ++S +  +   SK  +    
Sbjct: 59  SRIE---NLKKLVHINLPKMLLRLPMISQVEEVVKYADISLVSDIITIRELSKEAIKQNK 115

Query: 121 SHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQ 178
            H   L +D G  R G+  +E +        + K  +L  I ++L+C         N  Q
Sbjct: 116 IHSIILMIDLGDLREGIFNEEEIYITVKEILDFKSIKLMGIGTNLSCYGGVIPTYENLSQ 175

Query: 179 LERFRTLISHYKGIE---ASLASSSGILLGPNYHF----QLTRPGISL---YGGTDKINK 228
           L      I +   I+    S  +S  I L  +          R G S+    G  D+  +
Sbjct: 176 LVNIEKNIENKFNIKIEVISGGNSGSISLFKDNKMPQEINQLRLGASISLGIGLNDEHIE 235

Query: 229 SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGYPL 281
              ++        I+ ++       G +           +       A+ AIG  D  P 
Sbjct: 236 PL-LKDAFKLVVEIVEVKNKPSVPIGTIGLDAFGNKPFFEDKGIMKRAICAIGRQDISPD 294

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---F 337
            L  +D   S                 +LG  + D  + DIT+     ++GD I+    F
Sbjct: 295 NLIPIDDNIS-----------------VLGA-SSDHLLLDITNCNKDYKIGDKIEFNVTF 336

Query: 338 GPDIKL 343
           G  + +
Sbjct: 337 GGCLSV 342


>gi|302535596|ref|ZP_07287938.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302444491|gb|EFL16307.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 343

 Score = 62.4 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 98/328 (29%), Gaps = 50/328 (15%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++       G     V +  E   ++ +     + VL     G++
Sbjct: 26  LIPVCKGNGYGFGHERLCEEATRMGADILAVGTTYEAASIKDH-FGGDLLVLTPFRRGED 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  ++SV  +          V     ++  +   R G+S Q+         +
Sbjct: 85  PVPLPDRVIRSVASVDGVRGL-------VGARVVIECMSSMRRHGISEQDLGLLQSAIED 137

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL------- 204
               +L     HL       S      +     L +    +     S    L        
Sbjct: 138 ---VRLEGFALHLPLDRPDGSDAVEEVIGWMDRLRAARLPLHTMFVSH---LRAEELARL 191

Query: 205 ---GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261
               P   F+         G  D                 ++ + +   G+   Y  Q K
Sbjct: 192 QQQFPQTRFRARIGTRLWLGDHDATQY----------RGSVLDVTRVAKGDRFGYRQQ-K 240

Query: 262 LTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI-- 313
              D  + V A G + G     P  L G+    +  V   G   +   + P +  GK   
Sbjct: 241 AASDGWLVVVAGGTSHGVGLEAPKALHGMMPR-AKGVARAGLATVNRNLSPFVWAGKQRW 299

Query: 314 -----TMDMTMFDIT-DSLSIEVGDYIQ 335
                 M +++  +  D+   +VGD + 
Sbjct: 300 FAEPPHMQVSILFVPSDATEPKVGDELV 327


>gi|170761414|ref|YP_001787394.1| alanine racemase domain-containing protein [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169408403|gb|ACA56814.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 353

 Score = 62.4 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 124/366 (33%), Gaps = 52/366 (14%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            + R+++D   ++ N   +         +  AV K      G  KIA A+    V     
Sbjct: 2   SYPRVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEKVDILAD 58

Query: 63  TSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGV 120
           + +E    L+          +L      Q + +     I ++S +  +   SK  +    
Sbjct: 59  SRIE---NLKKLVHINLPKMLLRLPMISQVEEVVKYADISLVSDIITIRELSKETIKQNK 115

Query: 121 SHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSV-Q 178
            H   L +D G  R G+  +E +        N K  +L  I ++L+C         ++ Q
Sbjct: 116 IHSIILMIDLGDLREGIFNEEEIYITVEEILNFKSVKLMGIGTNLSCYGGVIPTYKNLSQ 175

Query: 179 LERFRTLISHYKGIE---ASLASSSGILLGPNYHF----QLTRPGISL---YGGTDKINK 228
           L   +  I +   I+    S  +S  I L  +          R G S+    G  D+  +
Sbjct: 176 LVNIKKNIENKFNIKIEVISGGNSGSISLFKDNKMPQEINQLRLGASISLGIGLNDEHIE 235

Query: 229 SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGYPL 281
              ++        I+ ++       G +           +       A+ AIG  D  P 
Sbjct: 236 PL-LKDAFKLVVEIVEVKNKPSVPIGTIGLDAFGNKPFFEDKGIMKRAICAIGRQDISPD 294

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---F 337
            L  +D   S                 +LG  + D  + DIT+     ++GD I+    F
Sbjct: 295 NLIPIDDNIS-----------------VLGA-SSDHLLLDITNCNKDYKIGDKIEFNVTF 336

Query: 338 GPDIKL 343
           G  + +
Sbjct: 337 GGCLSV 342


>gi|289805169|ref|ZP_06535798.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 105

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 89  GQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH 147
            Q+   +D   L   I S  QL                ++V++G NRLG   + A     
Sbjct: 1   AQDLEAYDTYRLTTCIHSNWQLKALQNAR-LNAPLDIYVKVNSGMNRLGFQPERAQTVWQ 59

Query: 148 NSFNKKLGQLSLIISHLACADDPSS 172
                +      ++SH A AD P  
Sbjct: 60  QLRAMRNVGEMTLMSHFAQADHPEG 84


>gi|170289049|ref|YP_001739287.1| alanine racemase domain-containing protein [Thermotoga sp. RQ2]
 gi|170176552|gb|ACB09604.1| alanine racemase domain protein [Thermotoga sp. RQ2]
          Length = 353

 Score = 62.0 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 112/356 (31%), Gaps = 59/356 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG--NARTAAV--VKDNAYGLGCEKIAPALYNAGVQDFF 61
           + RL I+L  ++ N   +  ++         V  V      LG  + A  L  AG++   
Sbjct: 2   YPRLLINLKEIEENAKKVVEMASRRGIEIVGVTKV-----TLGDPRFAETLRKAGIRILG 56

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGV 120
            + ++  ++++    +    +L      +           ++S         +L      
Sbjct: 57  ESRIKNVLRMKKAGIEGPFMLLRLPMMSELVEDVRHFDYIMVSDPDVAKKVDELSREIKR 116

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +      +D G  R G+  ++A++        K   +  I ++  C             E
Sbjct: 117 NVKIIYMIDVGDLREGVWFEKAVEEIAQC---KGANVVGIGTNFGCYGGIIPT-----RE 168

Query: 181 RFRTLISHYKGIE---------ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKIN 227
           +F  L+   + +E          S  ++  +    N          R G ++  G D  N
Sbjct: 169 KFEILLDIKEKLEKNYGFNIEIVSGGNTPALYALENDEIPEGINQLRIGEAIVLGRDITN 228

Query: 228 K---SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYAD 277
                   Q     EA +I +++      G+          +         A+ A+G  D
Sbjct: 229 NRVIDWLSQDTFLIEAEVIEVKEKQSVPLGKRGLDVFGRKIEFVDRGIRKRAICALGEQD 288

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
                   +DS     V  G +              + D  + D+TD   ++VGD 
Sbjct: 289 --------IDSRGLIPVDKGVEVL----------HASSDHIVLDVTDFGDVKVGDV 326


>gi|29830835|ref|NP_825469.1| hypothetical protein SAV_4292 [Streptomyces avermitilis MA-4680]
 gi|29607948|dbj|BAC72004.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 343

 Score = 62.0 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 105/325 (32%), Gaps = 44/325 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++A      G     V +  E  +++ +     + VL     G+E
Sbjct: 26  LVPVCKGNGYGFGHERLADEATRLGSDVLAVGTTYEAARIKDW-FGGDLLVLTPFRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SS+  +          V     ++V +   R G+S Q+          
Sbjct: 85  PVPLPDRVIRSVSSIDGVYGL-------VGARVVIEVMSSMKRHGVSEQDLPHLHSAI-- 135

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL------- 204
            +  +L     HL       S      +     L +    +     S             
Sbjct: 136 -ENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKAEELARLQQQ 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+  R G  L+ G  +  +             ++ + +   G+   Y  Q K   
Sbjct: 195 FPQTRFR-ARIGTRLWLGDHEATEYRGA---------VLDVTRVSKGDRFGYRQQ-KAAS 243

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI----- 313
           D  + V A G + G     P  L G+    +  V   G   +   + P +  GK      
Sbjct: 244 DGYLVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWAGKQRWFAE 302

Query: 314 --TMDMTMFDIT-DSLSIEVGDYIQ 335
              M +++  +  D+   +VGD + 
Sbjct: 303 PPHMQVSILFVPSDATEPKVGDELV 327


>gi|254384799|ref|ZP_05000136.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194343681|gb|EDX24647.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 343

 Score = 62.0 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 100/322 (31%), Gaps = 38/322 (11%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G E++       G     V +  E   ++ +     + VL     G+E
Sbjct: 26  LIPVCKGNGYGFGHERLCEEATRMGADILAVGTTYEAASIKDW-FGGDLLVLTPFRRGEE 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +     +I  +SSV  +          V     ++  +   R G+S Q+ L   H++  
Sbjct: 85  PVPLPDRVIRSVSSVDGVRGL-------VGARVVIECMSSMRRHGISEQD-LGLLHSAIE 136

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA----SLASSSGILLGPN 207
               +L     HL       S      +     L +    +       L +     L   
Sbjct: 137 D--VRLEGFALHLPLDRPDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKAQELTRLQQQ 194

Query: 208 YHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL 267
           +     R  I                        ++ + +   G+   Y  Q K   D  
Sbjct: 195 FPQTRFRARIG-------TRLWLGDHEATQYRGAVLDVTRVSKGDRFGYRQQ-KAASDGW 246

Query: 268 IAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GKI-------T 314
           + V A G + G     P  L G+    +  V   G   +   + P +  GK         
Sbjct: 247 LVVVAGGTSHGVGLEAPKALHGVMPR-AKGVARAGLATVNRNLSPFVWAGKQRWFAEPPH 305

Query: 315 MDMTMFDIT-DSLSIEVGDYIQ 335
           M +++  +  D+   +VGD + 
Sbjct: 306 MQVSILFVPSDATEPKVGDELV 327


>gi|226949300|ref|YP_002804391.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           A2 str. Kyoto]
 gi|226842782|gb|ACO85448.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           A2 str. Kyoto]
          Length = 353

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 122/366 (33%), Gaps = 52/366 (14%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            + R+++D   ++ N   +         +  AV K      G  KIA A+    V     
Sbjct: 2   SYPRVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEEVDILAD 58

Query: 63  TSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
           + +E    L+          +L      Q + +     I ++S +  +   SK  +    
Sbjct: 59  SRIE---NLKKLVHINLPKMLLRLPMVSQVEEVVKYADISLVSDIITIRELSKEAIKQNK 115

Query: 121 SHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQ 178
            H   L +D G  R G+  +E +        + K  +L  I ++L+C         N  Q
Sbjct: 116 IHSIILMIDLGDLREGIFNEEEIYITVKEILDFKSIKLMGIGTNLSCYGGVIPTYENLSQ 175

Query: 179 LERFRTLISHYKGIE---ASLASSSGILLGPNYHF----QLTRPGISL---YGGTDKINK 228
           L      I +   I+    S  +S  I L  +          R G S+    G  DK  +
Sbjct: 176 LVNIEKNIENKFNIKIEVISGGNSGSISLFKDNKMPQEINQLRLGASISLGIGLNDKHIE 235

Query: 229 SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGYPL 281
              ++        I+ ++       G +           +       A+ AIG  D  P 
Sbjct: 236 PL-LKDAFKLVIEIVEVKNKPSVPIGTIGLDAFGNKPFFEDKGIMKRAICAIGRQDISPD 294

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---F 337
            L  +D   S                 +LG  + D  + DIT+     ++GD I+    F
Sbjct: 295 NLIPIDDNIS-----------------VLGA-SSDHLLLDITNCNKDYKIGDKIEFNVTF 336

Query: 338 GPDIKL 343
           G  + +
Sbjct: 337 GGCLSV 342


>gi|166362859|ref|YP_001655132.1| putative amino acid racemase [Microcystis aeruginosa NIES-843]
 gi|166085232|dbj|BAF99939.1| putative amino acid racemase [Microcystis aeruginosa NIES-843]
          Length = 361

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 120/348 (34%), Gaps = 45/348 (12%)

Query: 8   RLKIDLTALKNNWHSMNALSGNAR--TAAVVKD-NAYGLGCEKIAPALYNAGVQDFFVTS 64
           R++I L  +++N   +    G+       V K      LG   IA A+   GV     + 
Sbjct: 7   RIEISLPKIRHNARLLCQFYGSKGLSVMGVSKAI----LGDPSIALAMIQGGVNFIADSR 62

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           +E  +K++         +L       E +  I D +L   ++++ +L++Y++       H
Sbjct: 63  IENILKMKQAGIVTTFVLLRTALSQAESVVNIADISLNTELATIQELSYYAQ--EKQKIH 120

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSV--- 177
              +  + G  R G+  ++ + F   +      ++  +  +LAC     P SH  S    
Sbjct: 121 RIIIMTELGDLREGVLPKDLVKFIKKTLAFPFIKIIGLGCNLACYGGIKPDSHNMSKLSV 180

Query: 178 ---QLERFRTLISHYKGIEASLASSSGILLGPNY----HFQLTRPGISLYGGTDKINKSH 230
               +E+    +     I  S  +S+                 R G S+  G + +N+  
Sbjct: 181 LTDTIEQ--EFLIKLPII--SGGNSANYQWYQKSSEVGRINNLRLGESILLGCETVNRQV 236

Query: 231 PMQT---VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD-GYPLTLSGL 286
                       A +I  +   +      G        S I        D G    +  +
Sbjct: 237 IPGLYTDAFRLIAEVIESKDKPSLPSGEIGRDAFGNVPSFI--------DQGIHRRV--I 286

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334
            +     + + G        + ILG  + D  + D + +  ++VG  +
Sbjct: 287 IALGRQDILISG--LQTSQEIKILGS-SSDHLVLD-SHNKRLKVGSEV 330


>gi|257469535|ref|ZP_05633627.1| Serine racemase [Fusobacterium ulcerans ATCC 49185]
 gi|317063779|ref|ZP_07928264.1| serine racemase [Fusobacterium ulcerans ATCC 49185]
 gi|313689455|gb|EFS26290.1| serine racemase [Fusobacterium ulcerans ATCC 49185]
          Length = 369

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 12  DLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +  AL+NN  +   +          ++K         ++      AG       +++E  
Sbjct: 14  NFDALENNIKTYQKMCDDNGKELWPMIKT----HKSMELLKLQIEAGATGALCGTLDEAE 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV--------ISSVPQLTFYSK-LMSCGV 120
                  +  I      +P   K   +  +           + ++      +   ++ GV
Sbjct: 70  ACCRIGLKK-IM---YAYPAASKESIERIIELTKKSDFIVRLDNLEAAKMINDMAIAAGV 125

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
              Y + VD+G +R GL + + ++F     + K  +L  + +H
Sbjct: 126 VVSYTIIVDSGLHRFGLPVDKIVEFADKLKDMKGLKLRGLSTH 168


>gi|320533685|ref|ZP_08034304.1| hypothetical protein HMPREF9057_02194 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134080|gb|EFW26409.1| hypothetical protein HMPREF9057_02194 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 61

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 11/50 (22%)

Query: 332 DYIQIFGPD-----------IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           D   ++G                D+ A   GT NY+++ R+G R  + Y 
Sbjct: 1   DAAVLWGAPEHGGVSDPEAVPTADEWAQVCGTINYEIVTRLGARVPRCYV 50


>gi|159044841|ref|YP_001533635.1| putative amino acid racemase [Dinoroseobacter shibae DFL 12]
 gi|157912601|gb|ABV94034.1| putative amino acid racemase [Dinoroseobacter shibae DFL 12]
          Length = 373

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 24/171 (14%)

Query: 8   RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKI----------APALYNAG 56
           RL++DL  +++N  ++   L+              GLG   +          A A+   G
Sbjct: 5   RLEVDLCKIRHNAQTLAGRLTPR------------GLGITAVTKAVCGNPAIARAMLEGG 52

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                   +    +LR       + ++      +   +         S +  ++  S   
Sbjct: 53  AVGLAEARLRNVRRLREAGLTCAVTLIRTPMLSEAAEVVRLCETSFNSDLRVISALSAES 112

Query: 117 -SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
                +H   L V+ G  R G+  +E               L  I ++ AC
Sbjct: 113 CPRRAAHGIILMVEMGDLREGILPEELGALALRVRALPGVVLQGIGANFAC 163


>gi|227432610|ref|ZP_03914588.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351646|gb|EEJ41894.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 82

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVS 121
             ++E + LR       I VL    P   ++  + N+    S+   +     +L   G++
Sbjct: 2   AMLDEALTLRDLGYIQPIDVLGLTDPRYARLAAERNITLAFSTKESIKAAAEQLAGTGLT 61

Query: 122 HPYALQVDTGFNRLGLSL 139
              +L VDTG NR+ L +
Sbjct: 62  LKVSLPVDTGLNRIVLKV 79


>gi|70725863|ref|YP_252777.1| hypothetical protein SH0862 [Staphylococcus haemolyticus JCSC1435]
 gi|68446587|dbj|BAE04171.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 355

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 123/351 (35%), Gaps = 60/351 (17%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
             ++ I+L+ ++ N  ++  L  + +     V+K        G  +I   L  +G   F 
Sbjct: 1   MAQININLSKIEYNADALRTLLENNDIHLTPVIKCIA-----GDSRIIETLIQSGFTHFA 55

Query: 62  VTSVE---EGVKLRLYTPQARIFVLYGIHPGQEKIIFD---TNLIPVISSVPQLTFYSKL 115
            + +E   E      +  Q    +L      +   +      ++   I S+ ++   +K 
Sbjct: 56  ESRLENINE-----DFKGQCNYLLLRPTSKNRYTQLIKSVKMSMQTEIESIREINDIAK- 109

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHV 174
                 H   L +D    R G+   + L++          QL  I  +  C    + +  
Sbjct: 110 -QLNQKHQIMLMIDWKDRREGVITYDVLNYIEEIIKMTHIQLIGIAFNFMCFKSSAPTEE 168

Query: 175 NSVQLERFRTLISHYKGIE---ASLASSS---GILLGPNYHFQLTRPGISLY-GGTDKIN 227
           + +++ +F   I +  G      S  +SS    ++          R G +L+ G     N
Sbjct: 169 DILKINQFVDAIEYNLGFRLKVVSGGNSSMIPQLMYNDLGRINELRIGEALFRGIDTTTN 228

Query: 228 KSHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +S PM  Q  +T EA I+ I+  L+     Y            A+  IGY D        
Sbjct: 229 QSIPMLFQNAITVEAEILEIKPRLSDNNQCYLQ----------AIVDIGYVD-------- 270

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
             ++ +    +     I G         + D  M ++ +    +VGD I+ 
Sbjct: 271 --TDVNKIKPIKNDVSIVG--------ASSDHLMINLNNQDYYKVGDIIEF 311


>gi|226307544|ref|YP_002767504.1| hypothetical protein RER_40570 [Rhodococcus erythropolis PR4]
 gi|226186661|dbj|BAH34765.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 597

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 6/161 (3%)

Query: 9   LKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           + +DL  ++ N   +   + +     A V K      G  K+A A+   GV     + ++
Sbjct: 6   ITVDLRRIEQNARVLVEASNAKGIEVAGVSKST---CGSPKVARAMVRGGVAQIADSRLD 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125
              ++R       + ++      +         I + S +  +       ++ GV H   
Sbjct: 63  NLARIRRDGITVPLMLIRAPSLNEIDDTIRYADISLNSELTTIVALGRAALTRGVIHDIV 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
           L +D G  R G+   EALD        +  +L  I ++LAC
Sbjct: 123 LMIDLGDLREGILPAEALDVVAEILPIEGIRLIGIGANLAC 163


>gi|187779411|ref|ZP_02995884.1| hypothetical protein CLOSPO_03007 [Clostridium sporogenes ATCC
           15579]
 gi|187773036|gb|EDU36838.1| hypothetical protein CLOSPO_03007 [Clostridium sporogenes ATCC
           15579]
          Length = 355

 Score = 60.4 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 112/357 (31%), Gaps = 59/357 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVV-------KDNAYGLGCEKIAPALYNAGVQDF 60
           ++I+L  +  N   +  L   A    A+V       K          +   +   G++  
Sbjct: 8   VEINLKNITYNIGRLIDLCNGAGIELAIVTKSFCAEKA---------VVETIIKEGIKTI 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119
               ++  +K++    +    +L      +   + +   I + S +  +   SK  M   
Sbjct: 59  ADARMKNLMKIQDLNCEK--LLLRIPMKSEVSKVIEYADISLNSELEIIKELSKEAMKVN 116

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSV 177
             H   L +D G  R G+  ++ L            +   + ++L C     P  +    
Sbjct: 117 KIHKIILMIDLGDLREGILPKDVLPTVKEIIKLPNLEFVGVGTNLTCYGGVIPDENNLGK 176

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGI--------SLYGGTDKINK- 228
            LE    + +  K I+ S+ S                 GI        ++ G      + 
Sbjct: 177 LLEIKNQIENELK-IKVSIVSGGNSSSLHMIVNDSIPQGINQLRIGEAAILGRETAFGQK 235

Query: 229 -SHPMQTVVTAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
             +  +  VT    I+ +++      G    +                A+ A+G  D   
Sbjct: 236 LDNFYEDCVTLVGEIVELKEKPSMPEGNIGLDAFGNKPSFIDKGIMKRAILALGQQD--- 292

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
           + L GL  ++S    LG                + D  + D+T      ++GD ++ 
Sbjct: 293 IKLDGLIPKNSEIEILGA---------------SSDHLLLDLTKCKNQYKIGDTVEF 334


>gi|326329098|ref|ZP_08195427.1| putative alanine racemase [Nocardioidaceae bacterium Broad-1]
 gi|325953180|gb|EGD45191.1| putative alanine racemase [Nocardioidaceae bacterium Broad-1]
          Length = 350

 Score = 60.4 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 88/286 (30%), Gaps = 35/286 (12%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP-----ALYNAGVQDF 60
            L+L +D    + +  +    +       V K N YGL   K+A           GV   
Sbjct: 2   PLKLTVDADRWRKHVQTFAEATPG--LVPVAKGNGYGLTLRKLAHQTEWLTSLGTGVDTL 59

Query: 61  FVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
            V +  E  ++        I+VL       P     I D     +I ++ +      L+ 
Sbjct: 60  AVGTYNEVWEV-ATRFSGSIYVLTPWRPYSPEINPEIADR----IIHTISRPEDLPLLLE 114

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
              +    L++ T   R G++  +       S  ++  +   +  H            + 
Sbjct: 115 RQPNARVILELVTSMRRHGMTPSDLWPTA--SIAREHARFEGVTMHFGL----DGGSLAE 168

Query: 178 QLERFRTLI-SHYKGIEASL--ASSSGILLGPNYHFQLT-RPGISLYGGTDKINKSHPMQ 233
              +   ++ +  K +  S   A+    L     +  +  RP +               +
Sbjct: 169 VRAQMDAVVGAEAKTVWVSHLSANELAQLR--ASYGDIIFRPRVG-------TALWLGDR 219

Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279
             +   A +  +     G    Y G+    R   + VA+ G A G 
Sbjct: 220 GALHVTATVEDVHPLERGYSYGYRGR-TAMRAGHLVVASGGTAHGI 264


>gi|237739119|ref|ZP_04569600.1| serine racemase [Fusobacterium sp. 2_1_31]
 gi|229423719|gb|EEO38766.1| serine racemase [Fusobacterium sp. 2_1_31]
          Length = 369

 Score = 60.1 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 23/189 (12%)

Query: 1   MHSNEFLRLKI--DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M   E     I  ++ ALKNN  +   L          ++K         +I       G
Sbjct: 1   MKKKELKTPTILLNIEALKNNIKNYQKLCTEYKKELWPMIKT----HKSMEIVGMQIKEG 56

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-------NLIPVISSVPQL 109
                  +++E         Q    ++Y      E+ I          + I  + S+   
Sbjct: 57  ATGVLCGTLDEAEACCEKGIQK---IMYAYPVASEENIKRIIEITKKTDFIIRLDSLEAA 113

Query: 110 TFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH----L 164
              +K+     V   Y + VD+G +R GLSL+  L F       K  +L  I SH     
Sbjct: 114 IKINKIAEAENVIISYTIIVDSGLHRFGLSLKNLLTFAEELKKLKNLKLRGISSHPGHVY 173

Query: 165 ACADDPSSH 173
           +   +   H
Sbjct: 174 SSTCEADIH 182


>gi|229489294|ref|ZP_04383158.1| arginase family protein [Rhodococcus erythropolis SK121]
 gi|229323787|gb|EEN89544.1| arginase family protein [Rhodococcus erythropolis SK121]
          Length = 597

 Score = 60.1 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 6/161 (3%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           + +DL  ++ N   +     +     A V K      G  K+A A+   GV     + ++
Sbjct: 6   ITVDLRRIEQNARVLVEASSAHGISVAGVSKST---CGSPKVARAMVRGGVTQIADSRLD 62

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125
              ++R       + ++      +         I + S +  +        + GV H   
Sbjct: 63  NLARIRRDGITVPLMLIRAPSLNEIDDTIRYADISLNSELTTIAALGRAARTRGVVHDIV 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
           L +D G  R G+   EALD        +  +L  I ++LAC
Sbjct: 123 LMIDLGDLREGILPAEALDVVAEILPIEGIRLIGIGANLAC 163


>gi|325001373|ref|ZP_08122485.1| alanine racemase [Pseudonocardia sp. P1]
          Length = 47

 Score = 60.1 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 11 IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALY 53
          +DL A+++N   ++ L+    A T  VVK + YG G   +A A  
Sbjct: 2  VDLDAVRHNVAYLSGLAARSGAATMVVVKADGYGHGAAGVARAAL 46


>gi|307297660|ref|ZP_07577466.1| alanine racemase domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916920|gb|EFN47302.1| alanine racemase domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 353

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 125/357 (35%), Gaps = 55/357 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALS--GNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDF 60
             ++ ++  ++  N   +  L+       AAV   V       G   IA  L N+GV++ 
Sbjct: 1   MAKVVVNTVSIGANAKRVRELAEVNGVEIAAVTKVV------CGDPTIASILLNSGVKEI 54

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119
             + +E   ++      +   +L      + + + D     +I  +  L+   +L    G
Sbjct: 55  GESRLENISRITNAGIDSDFLLLRLPERSKFREVLDNVDTVLIGDLDSLSKLYELSSETG 114

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD----DPSSHVN 175
               +   +DTG  R G+   EA      +F      L  I ++L C       P     
Sbjct: 115 QEVNFIYMIDTGDLREGVMYYEAESVLEKAFEIAGENLEGIGTNLGCFGGVIATPKKFEI 174

Query: 176 SVQLERFRTLISHYKGIEASLASSS-------GILLGPNYHFQLTRPGISLYGGTDKINK 228
            + L  F    + Y     S  +++       GI+     HF   R G S+  GTD  N 
Sbjct: 175 LLSLGEFLRKKTGYSLRRYSAGNTASLPLLEKGIVPKGINHF---RLGESILCGTDVTNN 231

Query: 229 ---SHPMQTVVTAEARIILIRK---ALAGELV--SYGGQKKL-TRDSLI-AVAAIGYADG 278
                 +Q   T    +I I +      GE+   ++G       +   I A+  +G  D 
Sbjct: 232 REVPGTLQDTFTLYGEVIEIAEKPSVPIGEIGRDAFGRIPHFEDKGKRIKAILDLGEQDV 291

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYI 334
            P  L+                 + G    +L   + D  + D+T+S  S  VGD I
Sbjct: 292 LPSGLT---------------PLVGG--CEVL-HASSDHLIVDVTESEKSFSVGDSI 330


>gi|239636176|ref|ZP_04677180.1| alanine racemase domain protein [Staphylococcus warneri L37603]
 gi|239598192|gb|EEQ80685.1| alanine racemase domain protein [Staphylococcus warneri L37603]
          Length = 359

 Score = 59.7 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 121/342 (35%), Gaps = 51/342 (14%)

Query: 11  IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           I+L+ ++ N   +  +  + + +   V+K  A   G  ++   L + G+  F  + +E  
Sbjct: 6   INLSKIQYNAKVLQTILDAKHIQFTPVIKSIA---GDRQVVQKLIDLGITHFADSRLE-- 60

Query: 69  VKLRLYT-PQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
             +R  T       +L      Q   +      ++   ++++ +L   ++     + H  
Sbjct: 61  -NIRQLTDFDCSFTILRSTQLSQLDNMIKNAQISIQTELNTILELNRIAE--QLNLKHQV 117

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-LERFR 183
            L VD    R G+   + + +     N    QL  +  +  C    +   + V  + +F 
Sbjct: 118 ILMVDWKDGREGVLTYDVVKYIETILNLSHIQLIGLSFNFMCFKSGTPIEDDVFMINKFV 177

Query: 184 TLISHYKGIEASLASSSGILLGPNYHF------QLTRPGISLYGGTDKINK---SHPMQT 234
           + I    G    + S     + P   +         R G +L+ G D       SH  Q 
Sbjct: 178 SAIEREIGYRMKIVSGGNSSMLPLTMYNDLGKINELRIGETLFRGVDTTTDKPVSHLYQD 237

Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294
            +  EA I+ I+  +              +  L A+  IGY D         D+ H   +
Sbjct: 238 AIVLEAEILEIKPRMNSH---------TKQSYLQAIVDIGYID--------TDTTHINPI 280

Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
                       + I+G  + D  M D+ +    ++G+ IQ 
Sbjct: 281 A---------NDIQIIGA-SSDHLMIDLNNQDHYQIGNKIQF 312


>gi|222099835|ref|YP_002534403.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359]
 gi|221572226|gb|ACM23038.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359]
          Length = 375

 Score = 59.7 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 114/356 (32%), Gaps = 59/356 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNA--RTAAV--VKDNAYGLGCEKIAPALYNAGVQDFF 61
           + R+ I+L  ++ N   +  ++         V  V      LG  + A AL  AG++   
Sbjct: 24  YPRVLINLKEIEENARKVVQMAEKRGIEIVGVTKV-----TLGDPRFAEALKRAGIKILG 78

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGV 120
            + ++  ++++    +    +L      +           ++S         +L    G 
Sbjct: 79  ESRLKNVLRMKKAGIEGPFMLLRLPMMSELVEDVKHFDYIMVSDPKVARMVEELSKETGR 138

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +      +D G  R G+  ++A++            +S I ++  C             E
Sbjct: 139 NVKIIYMIDVGDLREGVWYEKAVEEISQC---NPSSISGIGTNFGCYGGIIPT-----KE 190

Query: 181 RFRTLISHYKGIE---------ASLASSSGILLGP----NYHFQLTRPGISLYGGTDKIN 227
           +F  L+S  + +E          S  ++  +L              R G ++  G D  N
Sbjct: 191 KFEMLLSIKEKLEKEHGFNIEIVSGGNTPTLLALESGEIPEGVNQLRIGEAIALGRDITN 250

Query: 228 K---SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYAD 277
                   Q     EA +I +++      G           +         A+ A+G  D
Sbjct: 251 NRVIDWLSQDTFIVEAEVIEVKEKPSIPVGRRGLDVFGRKVEFVDRGIRRRAICALGEQD 310

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
                   +DS     V  G +              + D  + D+T+   ++VGD 
Sbjct: 311 --------IDSRGLIPVDKGVEVL----------HASSDHIVLDVTEYGDVKVGDV 348


>gi|213620646|ref|ZP_03373429.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 40

 Score = 59.7 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 331 GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           G  ++++G +IK+DDVA A+GT  Y LL  +  R  
Sbjct: 1   GTPVELWGKEIKVDDVASAAGTLGYGLLCAVAPRVP 36


>gi|167646643|ref|YP_001684306.1| alanine racemase domain-containing protein [Caulobacter sp. K31]
 gi|167349073|gb|ABZ71808.1| alanine racemase domain protein [Caulobacter sp. K31]
          Length = 383

 Score = 59.3 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 26/168 (15%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L ID  AL+ N   M   +         +A+T               IA     AG    
Sbjct: 25  LVIDRPALERNIARMARFAADKGVKLRPHAKT----------HKSVDIAKLQVAAGAVGL 74

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGI--HPGQEKII----FDTNLIPVISSVPQLTFYSK 114
               + E   L        + +   +   P   ++I      ++L+ V+     +    +
Sbjct: 75  CCAKIGEAEALAEGGVATGLLITSPVVSAPAIARLIKLNAATSDLMTVVDHPANVAALGE 134

Query: 115 LMSC-GVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI 160
             S  G +    + +D G +R G+ S + A+        +     + +
Sbjct: 135 AASGVGKALKVVIDLDPGIHRTGVASPEAAVALLRAIQAQPGLIYAGL 182


>gi|149923112|ref|ZP_01911527.1| amino acid aldolase or racemase-like protein [Plesiocystis pacifica
           SIR-1]
 gi|149816020|gb|EDM75534.1| amino acid aldolase or racemase-like protein [Plesiocystis pacifica
           SIR-1]
          Length = 408

 Score = 59.3 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 61/208 (29%), Gaps = 31/208 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYNAGVQD 59
           L IDL A+++N  +M   +G+ +           AVV              AL  AG++ 
Sbjct: 33  LVIDLDAVEHNIAAMVQRAGSPQRWRPHLKTTKQAVV------------ISALIRAGLRH 80

Query: 60  FFVTSVEE-GVKLR---LYTPQARIFVLYGIHP----GQEKIIFDT--NLIPVISSVPQL 109
             V +++E  + LR          + V Y +      G   +        I V++  P  
Sbjct: 81  LKVATLDELELVLRTGAAEDVALDVLVAYPLQRAACRGALALAARWPEAQIHVLADSPAH 140

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
                  S        L VD G  R G +               L  L     H      
Sbjct: 141 LEALAAWSGSDPLSVLLDVDLGMGRTGSAPDRWRALEATPEGLSLAGLHGYDGHHRWTHR 200

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLA 197
            ++H    QL            +    A
Sbjct: 201 EAAHAGYGQLCALAQAFLERPALRIQGA 228


>gi|237741584|ref|ZP_04572065.1| serine racemase [Fusobacterium sp. 4_1_13]
 gi|229429232|gb|EEO39444.1| serine racemase [Fusobacterium sp. 4_1_13]
          Length = 369

 Score = 59.3 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 21/180 (11%)

Query: 12  DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++ ALKNN      L          ++K         +I       G       +++E  
Sbjct: 14  NIEALKNNIKKYQNLCTEYKKELWPMIKT----HKSMEIVEMQIKEGATGVLCGTLDEAE 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV------ISSVPQLTFYSKLMSCGVS-- 121
                  +    ++Y      E+ I    +I +      I  +  L    K+     +  
Sbjct: 70  ACCQKGVKK---IMYAYPVASEENI--NRIIEMSKKTEFIIRLDSLEAAIKINKIAETEN 124

Query: 122 --HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
               Y + VD+G +R G+SL+  L F       K  +L  I SH       +   +  Q 
Sbjct: 125 IIINYTIIVDSGLHRFGVSLKNLLAFAEKLKKLKYLKLRGISSHPGHVYSSTCEADIHQY 184


>gi|298695444|gb|ADI98666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 356

 Score = 59.3 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 115/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++ Q+   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S I A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTETHESFIQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|282917526|ref|ZP_06325278.1| hypothetical protein SATG_02098 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283767276|ref|ZP_06340191.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|282318488|gb|EFB48846.1| hypothetical protein SATG_02098 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283461155|gb|EFC08239.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
          Length = 356

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 115/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++ Q+   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S I A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFIQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|15644345|ref|NP_229397.1| hypothetical protein TM1597 [Thermotoga maritima MSB8]
 gi|281412630|ref|YP_003346709.1| alanine racemase domain protein [Thermotoga naphthophila RKU-10]
 gi|4982168|gb|AAD36664.1|AE001804_8 hypothetical protein TM_1597 [Thermotoga maritima MSB8]
 gi|281373733|gb|ADA67295.1| alanine racemase domain protein [Thermotoga naphthophila RKU-10]
          Length = 354

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 109/356 (30%), Gaps = 59/356 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG--NARTAAV--VKDNAYGLGCEKIAPALYNAGVQDFF 61
           + RL I+L  ++ N   +  ++         V  V      LG  + A  L  AG+    
Sbjct: 3   YPRLLINLKEIEENARKVVEMASRRGIEIVGVTKV-----TLGDPRFAETLRKAGIGILG 57

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGV 120
            + +   ++++    +    +L      +           ++S         +L      
Sbjct: 58  ESRIRNVLRMKKAGIEGPFMLLRLPMMSELVEDVKHFDYIMVSDPDVAKKVDELSREMKR 117

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +      +D G  R G+  ++A++        +   +  I ++  C             E
Sbjct: 118 NVKIIYMIDVGDLREGVWFEKAVEEIAQC---RGANIVGIGTNFGCYGGIIPT-----RE 169

Query: 181 RFRTLISHYKGIE---------ASLASSSGILLGPNYHF----QLTRPGISLYGGTDKIN 227
           +F  L+   + +E          S  ++  +    N          R G ++  G D  N
Sbjct: 170 KFEILLDIKEKLEKNHGFNIEIVSGGNTPALYALENGEIPEGINQLRIGEAIVLGRDITN 229

Query: 228 K---SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYAD 277
                   Q     EA +I +++      G+                    A+ A+G  D
Sbjct: 230 NRVIDWLSQNTFLIEAEVIEVKEKPSVPLGKRGLDVFGRKVDFVDRGIRKRAICALGEQD 289

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
                   +DS     V  G +              + D  + D+TD   ++VGD 
Sbjct: 290 --------IDSRGLIPVDKGVEVL----------HASSDHIVLDVTDFGDVKVGDV 327


>gi|268315648|ref|YP_003289367.1| alanine racemase domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262333182|gb|ACY46979.1| alanine racemase domain protein [Rhodothermus marinus DSM 4252]
          Length = 396

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 34/179 (18%)

Query: 11  IDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ID   L  N   M   +         +A+T              ++A      G     V
Sbjct: 14  IDRQRLLGNLREMQQRATQEGVALRPHAKT----------HKTPELARLQQELGATGITV 63

Query: 63  TSVEEGVK--------LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
            +V+E           +R+  P   I      +     ++    +   + +   +   S 
Sbjct: 64  ATVDEAEAFVAAGLTDVRVAYPTVGI----DRYERLLALMAQARISFCLDTPEAIRAASD 119

Query: 115 L-MSCGVSHPYALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADD 169
              + G      L+VDTGF R G+   +A   +D           +L  +++H   A  
Sbjct: 120 FFAARGRQAEVLLEVDTGFGRTGVRWDDARRLVDCARLIQESPGLRLIGLLTHAGQAYH 178


>gi|302333818|gb|ADL24011.1| alanine racemase [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 356

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 115/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++ Q+   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVQTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S + A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFLQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|150389494|ref|YP_001319543.1| alanine racemase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949356|gb|ABR47884.1| alanine racemase domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 367

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 11/162 (6%)

Query: 9   LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L +DL  L+ N   M  L+         +VK        E I       G +      + 
Sbjct: 11  LVVDLDQLEKNIEEMGVLAKDHGVALWPMVKT----HKSEYIVKKQLENGAEGVLAAKLG 66

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQLTFY-SKLMSCGVS 121
           E  K+     +  +     I  G+ K +        +   I S+        K ++ G+ 
Sbjct: 67  EAEKMVEAGAKKVMMAYPIIGEGKLKRLVALTEKAEVFCSIDSLEVAEILNEKAITEGIV 126

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
               + +D+G  RLG++  E   F ++    +  ++  + +H
Sbjct: 127 FQCIILIDSGLKRLGIAPHEVKKFYNSLARLQGIKIVGVGTH 168


>gi|168179682|ref|ZP_02614346.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           NCTC 2916]
 gi|182669231|gb|EDT81207.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           NCTC 2916]
          Length = 355

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 114/352 (32%), Gaps = 49/352 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFFVTSV 65
           ++I+L  + +N   +  L        V+  K        EK +   +   G++      +
Sbjct: 8   VEINLKNIAHNIRQLIDLCNIKEIKPVIVTKSFC----AEKLVVETIIKEGIKTIADARM 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPY 124
           +  +K++    +    +L      +   + + + I + S +  +   SK        H  
Sbjct: 64  KNLMKIQDLKCEK--LLLRIPMKSEVTKVIEYSDISLNSELEIIKELSKEARKVNKIHKI 121

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQLERF 182
            L VD G  R G+  ++AL            +   + ++L C     P  +     LE  
Sbjct: 122 ILMVDLGDLREGVLPKDALATVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLEIK 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGI--------SLYGGTDKINK--SHPM 232
             +    K I+ S+ S                 GI        ++ G  +   +  +   
Sbjct: 182 NQIEKELK-IKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRENAYGQKLNDFY 240

Query: 233 QTVVTAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +  +T    II +++      G    +        +       A+ A+G  D   + L G
Sbjct: 241 EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQD---IKLDG 297

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
           L  + +    LG                + D  + D+T      ++GD ++ 
Sbjct: 298 LIPKDNEIEILGA---------------SSDHLLLDLTKCKNQYKIGDTVEF 334


>gi|82751776|ref|YP_417517.1| hypothetical protein SAB2059c [Staphylococcus aureus RF122]
 gi|82657307|emb|CAI81748.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 356

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 115/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++ Q+   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDVLDYIKKIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S I A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFIQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|148270325|ref|YP_001244785.1| alanine racemase domain-containing protein [Thermotoga petrophila
           RKU-1]
 gi|147735869|gb|ABQ47209.1| alanine racemase domain protein [Thermotoga petrophila RKU-1]
          Length = 353

 Score = 58.5 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 112/356 (31%), Gaps = 59/356 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG--NARTAAV--VKDNAYGLGCEKIAPALYNAGVQDFF 61
           + RL I+L  ++ N   +  ++         V  V      LG  + A  L  AG++   
Sbjct: 2   YPRLLINLKEIEENAKKVVEMASRRGIEIVGVTKV-----TLGDPRFAETLRKAGIKILG 56

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGV 120
            + ++  ++++    +    +L      +           ++S         +L      
Sbjct: 57  ESRIKNVLRMKKAGIEGPFMLLRLPMMSELVEDVRHFDYIMVSDPDVAKKVDELSREIKR 116

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           +      +D G  R G+  ++A++        K   +  I ++  C             E
Sbjct: 117 NVKIIYMIDVGDLREGVWFEKAVEEIAQC---KGTNVVGIGANFGCYGGIIPT-----RE 168

Query: 181 RFRTLISHYKGIE---------ASLASSSGILLGPNYHF----QLTRPGISLYGGTDKIN 227
           +F  L+   + +E          S  ++  +    N          R G ++  G D  N
Sbjct: 169 KFEILLDIKEKLEKNHGFNIEIVSGGNTPALYALENDEIPEGINQLRIGEAIVLGRDITN 228

Query: 228 K---SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYAD 277
                   Q     EA +I +++      G+          +         A+ A+G  D
Sbjct: 229 NRVIDWLSQDTFLIEAEVIEVKEKQSVPLGKKGLDVFGRKIEFVDRGIRKRAICALGEQD 288

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333
                   +DS     V  G +              + D  + D+TD   ++VGD 
Sbjct: 289 --------IDSRGLIPVDKGVEVL----------HASSDHIVLDVTDFGDVKVGDV 326


>gi|322806239|emb|CBZ03807.1| putative cytoplasmic protein [Clostridium botulinum H04402 065]
          Length = 355

 Score = 58.5 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 118/352 (33%), Gaps = 49/352 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFFVTSV 65
           ++I+L  + +N   +  L        V+  K        EK +   +   G++      +
Sbjct: 8   VEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFC----AEKSVVETIIKEGIKTIADARM 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPY 124
           +  +K++    +    +L      +   + + + I + S +  +   SK        H  
Sbjct: 64  KNLMKIQDLKCEK--LLLRIPMKSEVTKVIEYSDISLNSELEIIKELSKEARKVNKIHKI 121

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQLERF 182
            L VD G  R G+  ++AL            +   + ++L C     P  +     LE  
Sbjct: 122 ILMVDLGDLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLEIK 181

Query: 183 RTLISHYKGIEASLA---SSSG---ILLGPNYHF-QLTRPGISLYGGTDKI---NKSHPM 232
             +    K I+ S+    +SS    I+           R G ++  GT+       +   
Sbjct: 182 NQIEKELK-IKVSIVSGGNSSNLHMIVNDSIPKGINQLRIGEAVILGTETAYGQKLNDFY 240

Query: 233 QTVVTAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +  +T    II +++      G    +        K       A+ A+G  D   + L G
Sbjct: 241 EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFKDKGIMKRAILALGQQD---IKLDG 297

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
           L  + +    LG                + D  + D+T      ++GD ++ 
Sbjct: 298 LIPKDNEIEILGA---------------SSDHLLLDLTKCKNQYKIGDTVEF 334


>gi|226320649|ref|ZP_03796207.1| Alanine racemase [Borrelia burgdorferi 29805]
 gi|226233865|gb|EEH32588.1| Alanine racemase [Borrelia burgdorferi 29805]
          Length = 57

 Score = 58.5 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 31/55 (56%)

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369
           M++T+ +I   L ++ G  ++I    + +D+++  S  ++Y+LL  IG    + Y
Sbjct: 1   MNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 55


>gi|19703887|ref|NP_603449.1| Serine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714049|gb|AAL94748.1| Serine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 369

 Score = 58.5 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 19/191 (9%)

Query: 1   MHSNEFLRLKI--DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M   E     I  ++ ALKNN      L          ++K         +I       G
Sbjct: 1   MKKKELKTPTILLNIEALKNNIKKYQKLCTEYKKELWPMIKT----HKSMEIVEMQIKEG 56

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI----PVISSVPQLTFY 112
                  +++E         +    ++Y      E+ I     I      I  +  L   
Sbjct: 57  ATGVLCGTLDEVEACCQIGIKK---IMYAYPVASEENIKRIIEISKKTEFIIRLDSLEAA 113

Query: 113 SKLMSCGVSHPYALQ----VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
            K+     +    +     VD+G +R G+SL+  L F       K  +L  I SH     
Sbjct: 114 IKINKMAETENVIINYNIIVDSGLHRFGVSLKNLLTFAEELKKLKYLKLKGISSHPGHVY 173

Query: 169 DPSSHVNSVQL 179
             +   +  Q 
Sbjct: 174 SSTCEADIQQY 184


>gi|256026803|ref|ZP_05440637.1| Serine racemase [Fusobacterium sp. D11]
 gi|289764799|ref|ZP_06524177.1| serine racemase [Fusobacterium sp. D11]
 gi|289716354|gb|EFD80366.1| serine racemase [Fusobacterium sp. D11]
          Length = 369

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 55/178 (30%), Gaps = 17/178 (9%)

Query: 12  DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++ ALKNN      L          ++K         +I       G       +++E  
Sbjct: 14  NIEALKNNIKKYQNLCTEYKKELWPMIKT----HKSMEIVEMQIKEGATGVLCGTLDEAE 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNL----IPVISSVPQLTFYSKLMSCGVS---- 121
                  +    ++Y      E+ I            I  +  L    K+     +    
Sbjct: 70  ACCQKGVKK---IMYAYPVASEENIKRIIEMSKKTEFIIRLDSLEAAIKINKIAETENII 126

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             Y + VD+G +R G+SL+  L F       K  +L  I SH       +   +  Q 
Sbjct: 127 INYTIIVDSGLHRFGVSLKNLLTFAEELKKLKYLKLRGISSHPGHVYSSTCEADIHQY 184


>gi|163736631|ref|ZP_02144050.1| hypothetical amino acid racemase [Phaeobacter gallaeciensis BS107]
 gi|161390501|gb|EDQ14851.1| hypothetical amino acid racemase [Phaeobacter gallaeciensis BS107]
          Length = 373

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 84/263 (31%), Gaps = 37/263 (14%)

Query: 8   RLKIDLTALKNNWHSMNAL--------SGNARTAAVVKDNAYGL-GCEKIAPALYNAGVQ 58
           R+KIDL  +++N   +           +G  +          G  G   +A A+ + G  
Sbjct: 5   RIKIDLHKIRDNTRCLVERLKPLGITVTGVTKGVC-------GHPG---VARAMLDGGAI 54

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLM 116
                 +    ++R       I ++      Q   I +T      ++         +  +
Sbjct: 55  GLADARLANVRRMRKAGLTCPILMIRTPMLSQAGQIVET-CEASCNTETSVIAKLAAAAL 113

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             G+SH   L V+ G  R G+  ++  +   +        L  I ++  C     +   S
Sbjct: 114 RRGISHEIILMVEMGDGREGIMPEDLTNAALHVTRTPGVLLKGIGANFGCLA--DAAPTS 171

Query: 177 VQLERFRTLISHYKGIEASL---------AS-SSGILLGPNYHFQLTRPGISLYGGTDKI 226
             +    +L    +G              A+ S  +  GP       R G ++  GTD +
Sbjct: 172 QAMAVLSSLADETEGACGPFVETVSGGSSANLSWALDGGPADRINNLRIGEAILLGTDPV 231

Query: 227 NKSHPMQT---VVTAEARIILIR 246
           +            T  A +I  +
Sbjct: 232 SGHPISGLYTDAFTLLAEVIETK 254


>gi|256824351|ref|YP_003148311.1| amino acid aldolase or racemase [Kytococcus sedentarius DSM 20547]
 gi|256687744|gb|ACV05546.1| predicted amino acid aldolase or racemase [Kytococcus sedentarius
           DSM 20547]
          Length = 371

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 94/317 (29%), Gaps = 59/317 (18%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
             +D   L+ N   +  L+         +A+T            C +IA     AG    
Sbjct: 14  AVVDRDRLQANIDRVARLAADRGQALRPHAKT----------HKCPQIAALQLEAGASGL 63

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK------IIFDTNLIPVISSVPQLTFYSK 114
            V ++ E            + + Y +    ++      +     L   + SV  +   + 
Sbjct: 64  TVATLGEAEVFADAGCT-DLLIAYPVWWDADRAGRVAQLAARVRLAVGVDSVEAVQHLAS 122

Query: 115 LMSCGVSHPYA------------LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
           L+      P A            ++VD G +R G + Q+A              +  + +
Sbjct: 123 LLGTAPGRPLAAPISPPTLPELVVEVDCGHHRSGCAPQDAGAVARAGLEAGFV-VRGVFA 181

Query: 163 HLACADDP-SSHVNSVQLERFRTLIS---HYKGIEASLAS--SSGILLGPNYHFQLTRPG 216
               +  P      + Q  R   + +      GI     S  S+  +      F   RPG
Sbjct: 182 FPGHSYTPTGREEVAEQEARDLAVAADSLRGAGILEPWVSGGSTPTVEHEGDGFDEVRPG 241

Query: 217 ISLYG--GTDKINKSHPMQTVVTAEARIILIRKALAGELV--SYGGQKKLTRDSLIAVAA 272
           + + G     ++         +T  A ++       G LV  +        R        
Sbjct: 242 VYVVGDAQQWELGTCSSADVALTVHATVVS---HAGGRLVLDAGSKALGADR-------- 290

Query: 273 IGYADGYPLTLSGLDSE 289
            G+A G+   L   ++ 
Sbjct: 291 AGWATGFGRLLDHPEAR 307


>gi|21283833|ref|NP_646921.1| hypothetical protein MW2104 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486967|ref|YP_044188.1| hypothetical protein SAS2079 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297210001|ref|ZP_06926397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911012|ref|ZP_07128462.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21205275|dbj|BAB95969.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245410|emb|CAG43887.1| hypothetical protein SAS2079 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296885674|gb|EFH24611.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887992|gb|EFK83187.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 356

 Score = 57.7 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 115/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++ Q+   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S + A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFLQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|253729849|ref|ZP_04864014.1| amino acid racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726296|gb|EES95025.1| amino acid racemase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 356

 Score = 57.7 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 115/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++ Q+   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDILDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S + A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFLQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|57652195|ref|YP_186980.1| hypothetical protein SACOL2168 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161431|ref|YP_494774.1| hypothetical protein SAUSA300_2137 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88196087|ref|YP_500902.1| hypothetical protein SAOUHSC_02433 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222291|ref|YP_001333113.1| hypothetical protein NWMN_2079 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510385|ref|YP_001576044.1| hypothetical protein USA300HOU_2170 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142602|ref|ZP_03567095.1| hypothetical protein SauraJ_13337 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258450860|ref|ZP_05698917.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262050295|ref|ZP_06023142.1| hypothetical protein SAD30_1178 [Staphylococcus aureus D30]
 gi|262053059|ref|ZP_06025233.1| hypothetical protein SA930_1982 [Staphylococcus aureus 930918-3]
 gi|282926948|ref|ZP_06334574.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|284025208|ref|ZP_06379606.1| hypothetical protein Saura13_11502 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850640|ref|ZP_06791364.1| hypothetical protein SKAG_02737 [Staphylococcus aureus A9754]
 gi|304379362|ref|ZP_07362098.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|57286381|gb|AAW38475.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|87127405|gb|ABD21919.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203645|gb|ABD31455.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150375091|dbj|BAF68351.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369194|gb|ABX30165.1| hypothetical protein USA300HOU_2170 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257861454|gb|EEV84258.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259159055|gb|EEW44125.1| hypothetical protein SA930_1982 [Staphylococcus aureus 930918-3]
 gi|259161619|gb|EEW46214.1| hypothetical protein SAD30_1178 [Staphylococcus aureus D30]
 gi|269941773|emb|CBI50181.1| hypothetical protein SATW20_23130 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282592128|gb|EFB97151.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|294822511|gb|EFG38956.1| hypothetical protein SKAG_02737 [Staphylococcus aureus A9754]
 gi|302752053|gb|ADL66230.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342068|gb|EFM07971.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315195970|gb|EFU26332.1| hypothetical protein CGSSa01_06929 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139439|gb|EFW31316.1| alanine racemase protein [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142482|gb|EFW34292.1| alanine racemase protein [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314861|gb|AEB89274.1| Alanine racemase [Staphylococcus aureus subsp. aureus T0131]
 gi|329731370|gb|EGG67735.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 356

 Score = 57.7 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 115/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++ Q+   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S + A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFLQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|170758708|ref|YP_001787366.1| alanine racemase domain-containing protein [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169405697|gb|ACA54108.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 355

 Score = 57.7 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 119/352 (33%), Gaps = 49/352 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFFVTSV 65
           ++I+L  + +N   +  L        V+  K        EK +   +   G++      +
Sbjct: 8   VEINLKNIAHNIRQLIDLCNMKEIKPVIVTKSFC----AEKLVVETIIKEGIKTIADARM 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPY 124
           +  +K++    +    +L      +   + + + + + S +  +   SK        H  
Sbjct: 64  KNLMKIQDLKCEK--LLLRIPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNKIHKI 121

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQLERF 182
            L VD G  R G+  ++AL            +   + ++L C     P  +     LE  
Sbjct: 122 ILMVDLGDLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLEIK 181

Query: 183 RTLISHYKGIEASLA---SSS--GILLGPNY--HFQLTRPGISLYGGTDKI---NKSHPM 232
             +    K I+ S+    +SS   I++  +        R G +   G +       ++  
Sbjct: 182 NQIEKELK-IKVSIVSGGNSSSLHIIVNDSMPKGVNQLRIGEAAILGRETAYGQKLNNFY 240

Query: 233 QTVVTAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +  +T    II +++      G    +        +       A+ A+G  D   + L G
Sbjct: 241 EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQD---IKLDG 297

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
           L  + +    LG                + D  + D+T      ++GD ++ 
Sbjct: 298 LIPKDNEIEILGA---------------SSDHLLLDLTKCENQYKIGDTVEF 334


>gi|168184952|ref|ZP_02619616.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           Bf]
 gi|237795407|ref|YP_002862959.1| alanine racemase, N-terminal domain-containing protein [Clostridium
           botulinum Ba4 str. 657]
 gi|182671997|gb|EDT83958.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           Bf]
 gi|229262464|gb|ACQ53497.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           Ba4 str. 657]
          Length = 355

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 111/352 (31%), Gaps = 49/352 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFFVTSV 65
           ++I+L  + +N   +  L        V+  K        EK +   +   G++      +
Sbjct: 8   VEINLKNIAHNIRQLIDLCNIKEIKPVIVTKSFC----AEKLVVETIIKEGIKTIADARM 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPY 124
           +  +K++    +    +L      +   + + + I + S +  +   SK        H  
Sbjct: 64  KNLMKIQDLKCEK--LLLRIPMKSEVTKVIEYSDISLNSELEIIKELSKEARKVNKIHKI 121

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQLERF 182
            L VD G  R G+  ++AL            +   + ++L C     P  +     LE  
Sbjct: 122 ILMVDLGDLREGVLPKDALATVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLEIK 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY--GGTDKINKSHPMQTVV---- 236
             +    K I+ S+ S                 GI+    G    + +       +    
Sbjct: 182 NQIEKELK-IKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLNDFY 240

Query: 237 ----TAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
               T    II +++      G    +        +       A+ A+G  D   + L G
Sbjct: 241 EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQD---IKLDG 297

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
           L  + +    LG                + D  + D+T      ++GD ++ 
Sbjct: 298 LIPKDNEIEILGA---------------SSDHLLLDLTKCKNQYKIGDTVEF 334


>gi|157364143|ref|YP_001470910.1| alanine racemase domain-containing protein [Thermotoga lettingae
           TMO]
 gi|157314747|gb|ABV33846.1| alanine racemase domain protein [Thermotoga lettingae TMO]
          Length = 356

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 116/358 (32%), Gaps = 58/358 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG--NARTAAV--VKDNAYGLGCEKIAPALYNAGVQDFF 61
             RL I+L  L+ N   + +L    N     V  V      LG  ++A  + NAGV    
Sbjct: 1   MPRLYINLRLLEKNTKEVLSLCSKHNVELIGVTKVS-----LGDPQVAQCIRNAGVNIIG 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGV 120
            + VE   ++          +L      Q + I D     ++S +  +    ++  + G 
Sbjct: 56  ESRVENIKRMVKSGINRPFMMLRIPAISQLEEIVDLCDYILVSELKTVEAIEEICKNAGK 115

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
           S      VD G  R G+  ++A +         K  ++  + ++L C        N    
Sbjct: 116 SVNLIYMVDVGDLREGVWYKQAEEEICKAVKICKTSRIIGVGTNLGCYGGI-LPTN---- 170

Query: 180 ERFRTLISHYKGIE---------ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKI 226
           E    L+     IE          S  +++ + L  +          R G ++  GTD  
Sbjct: 171 ENMAKLVYIRDKIEQRTNTHLPIVSGGNTAALRLLEHSDLPEGVNQYRVGEAIMLGTDVT 230

Query: 227 NK---SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYA 276
           N        Q  V  EA +I ++       G+                    A+ A+G  
Sbjct: 231 NNRKIDWLEQKTVVLEAEVIEMKTKPSVPEGQSGLDAFGRQPVFVDKGLRKRAILALGEQ 290

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDY 333
           D  P  L          +    +              + D T+ DIT+    I VGD 
Sbjct: 291 DTVPKHL--------KPLDKNAEVI----------HASSDHTIVDITEVQRQINVGDT 330


>gi|153939293|ref|YP_001391327.1| alanine racemase domain-containing protein [Clostridium botulinum F
           str. Langeland]
 gi|170755259|ref|YP_001781566.1| alanine racemase domain-containing protein [Clostridium botulinum
           B1 str. Okra]
 gi|152935189|gb|ABS40687.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           F str. Langeland]
 gi|169120471|gb|ACA44307.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           B1 str. Okra]
 gi|295319356|gb|ADF99733.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           F str. 230613]
          Length = 353

 Score = 57.4 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 124/366 (33%), Gaps = 52/366 (14%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            + R+++D   ++ N   +         + AAV K      G  KIA A+    V     
Sbjct: 2   SYPRVEVDTKKIRYNTKILVEECKKRGIKVAAVTKTF---CGNPKIAKAIAEEEVDILAD 58

Query: 63  TSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGV 120
           + +E    L+          +L      Q + +     I ++S +  +   SK  +    
Sbjct: 59  SRIE---NLKKLVHINLPKMLLRLPMISQVEEVVKYTDISLVSDIITIRELSKEAIKQNK 115

Query: 121 SHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQ 178
            H   L +D G  R G+  +E +        N K  +L  I ++L+C         N  Q
Sbjct: 116 IHSVILMIDLGDLREGIFNEEEIYITVEEILNFKNVKLMGIGTNLSCYGGVIPTYENLSQ 175

Query: 179 LERFRTLISHYKGIE---ASLASSSGILLGPNYHF----QLTRPGISL---YGGTDKINK 228
           L   +  I +   I+    S  +S  I L  +          R G S+    G  D+  +
Sbjct: 176 LVNIKKNIENKFNIKIEVISGGNSGSISLFKDNKMPQEINQLRLGASISLGIGLNDEHIE 235

Query: 229 SHPMQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGYPL 281
              ++        ++ ++       G +           +       A+ AIG  D  P 
Sbjct: 236 PL-LKDAFKLVVEVVEVKNKPSVPIGTIGLDAFGNKPFFEDKGIMKRAICAIGRQDISPD 294

Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---F 337
            L  +D   S                 +LG  + D  + DIT+     ++GD I+    F
Sbjct: 295 NLIPIDDNIS-----------------VLGA-SSDHLLLDITNCNKDYKIGDKIEFNVTF 336

Query: 338 GPDIKL 343
           G  + +
Sbjct: 337 GGCLSV 342


>gi|329730285|gb|EGG66675.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 356

 Score = 57.4 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 115/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++ Q+   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S + A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFLQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      ++GD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQIGD 308


>gi|163740750|ref|ZP_02148143.1| hypothetical amino acid racemase [Phaeobacter gallaeciensis 2.10]
 gi|161385741|gb|EDQ10117.1| hypothetical amino acid racemase [Phaeobacter gallaeciensis 2.10]
          Length = 373

 Score = 57.4 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 79/240 (32%), Gaps = 34/240 (14%)

Query: 8   RLKIDLTALKNNWHSMNAL--------SGNARTAAVVKDNAYGL-GCEKIAPALYNAGVQ 58
           R+KIDL  +++N   +           +G  +          G  G   +A A+ + G  
Sbjct: 5   RIKIDLHKIRDNTRCLVERLKPLGITVTGVTKGVC-------GHPG---VARAMLDGGAI 54

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLM 116
                 +    ++R       I ++      Q   I +T      ++         +  +
Sbjct: 55  GLADARLANVRRMRKAGLTCPILMIRTPMLSQAGQIVET-CEASCNTETSVIAKLAAAAL 113

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             G+SH   L V+ G  R G+  ++  +   +        L  I ++ AC     +   S
Sbjct: 114 RRGISHEIILMVEMGDGREGIMPEDLTNAALHVTRTPGVLLKGIGANFACLA--DAAPTS 171

Query: 177 VQLERFRTLISHYKGIEASL---------AS-SSGILLGPNYHFQLTRPGISLYGGTDKI 226
             +    +L    +G              A+ S  +  GP       R G ++  GTD +
Sbjct: 172 QAMAVLSSLADETEGACGPFVETVSGGSSANLSWALDGGPADRINNLRIGEAILLGTDPV 231


>gi|153933907|ref|YP_001384263.1| alanine racemase domain-containing protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935732|ref|YP_001387802.1| alanine racemase domain-containing protein [Clostridium botulinum A
           str. Hall]
 gi|152929951|gb|ABS35451.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           A str. ATCC 19397]
 gi|152931646|gb|ABS37145.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           A str. Hall]
          Length = 353

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 122/365 (33%), Gaps = 50/365 (13%)

Query: 5   EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
            + ++++D   ++ N   +         +  AV K      G  KIA A+    V     
Sbjct: 2   SYPKVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEKVDILAD 58

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121
           + +E   KL          +L      Q + +     I ++S +  +   SK  +     
Sbjct: 59  SRIENLKKL--AHINLPKMLLRLPMISQVEEVVKYADISLVSDIITIRELSKEAIKQNKI 116

Query: 122 HPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHVNSV-QL 179
           H   L +D G  R G+  +E +        N K  +L  I ++L+C         ++ QL
Sbjct: 117 HSIILMIDLGDLREGIFNEEEIYITVKEILNFKNVKLMGIGTNLSCYGGVIPTYKNLSQL 176

Query: 180 ERFRTLISHYKGIE---ASLASSSGILLGP----NYHFQLTRPGISL---YGGTDKINKS 229
              +  I +   I+    S  +S  I L             R G S+    G  D+  + 
Sbjct: 177 VNIKKNIENKFNIKIEVISGGNSGSISLFKDNKIPQEINQLRLGASISLGIGLNDEHIEP 236

Query: 230 HPMQTVVTAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             ++        ++ ++       G    +        +       A+ AIG        
Sbjct: 237 L-LKDAFKLVVEVVEVKNKPSVPIGIIGLDAFGNKPFFEDKGIMKRAICAIG-------- 287

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---FG 338
              +  E+   +            + ILG  + D  + DIT+     ++GD I+    FG
Sbjct: 288 RQNISPENLIPIDDN---------ISILGA-SSDHLLLDITNCNKDYKIGDKIEFNVTFG 337

Query: 339 PDIKL 343
             + +
Sbjct: 338 GCLSV 342


>gi|15925168|ref|NP_372702.1| hypothetical protein SAV2178 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927758|ref|NP_375291.1| hypothetical protein SA1980 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268623|ref|YP_001247566.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394688|ref|YP_001317363.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980493|ref|YP_001442752.1| hypothetical protein SAHV_2162 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253734405|ref|ZP_04868570.1| amino acid racemase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006961|ref|ZP_05145562.2| hypothetical protein SauraM_10850 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257793382|ref|ZP_05642361.1| alanine racemase [Staphylococcus aureus A9781]
 gi|258406992|ref|ZP_05680144.1| alanine racemase [Staphylococcus aureus A9763]
 gi|258419926|ref|ZP_05682886.1| alanine racemase domain-containing protein [Staphylococcus aureus
           A9719]
 gi|258439259|ref|ZP_05690237.1| alanine racemase domain-containing protein [Staphylococcus aureus
           A9299]
 gi|258442161|ref|ZP_05691064.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446720|ref|ZP_05694875.1| alanine racemase domain-containing protein [Staphylococcus aureus
           A6300]
 gi|258449221|ref|ZP_05697326.1| alanine racemase domain-containing protein [Staphylococcus aureus
           A6224]
 gi|258455466|ref|ZP_05703426.1| alanine racemase domain-containing protein [Staphylococcus aureus
           A5937]
 gi|269203811|ref|YP_003283080.1| hypothetical protein SAAV_2239 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895244|ref|ZP_06303459.1| hypothetical protein SGAG_02579 [Staphylococcus aureus A8117]
 gi|282929326|ref|ZP_06336895.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|295407642|ref|ZP_06817432.1| hypothetical protein SMAG_02813 [Staphylococcus aureus A8819]
 gi|296275834|ref|ZP_06858341.1| hypothetical protein SauraMR_05782 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297246640|ref|ZP_06930469.1| hypothetical protein SLAG_02704 [Staphylococcus aureus A8796]
 gi|13701978|dbj|BAB43270.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247951|dbj|BAB58340.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741692|gb|ABQ49990.1| alanine racemase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947140|gb|ABR53076.1| alanine racemase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722628|dbj|BAF79045.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253727635|gb|EES96364.1| amino acid racemase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257787354|gb|EEV25694.1| alanine racemase [Staphylococcus aureus A9781]
 gi|257841402|gb|EEV65844.1| alanine racemase [Staphylococcus aureus A9763]
 gi|257844078|gb|EEV68467.1| alanine racemase domain-containing protein [Staphylococcus aureus
           A9719]
 gi|257847697|gb|EEV71695.1| alanine racemase domain-containing protein [Staphylococcus aureus
           A9299]
 gi|257852091|gb|EEV76022.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854788|gb|EEV77736.1| alanine racemase domain-containing protein [Staphylococcus aureus
           A6300]
 gi|257857524|gb|EEV80420.1| alanine racemase domain-containing protein [Staphylococcus aureus
           A6224]
 gi|257862677|gb|EEV85445.1| alanine racemase domain-containing protein [Staphylococcus aureus
           A5937]
 gi|262076101|gb|ACY12074.1| hypothetical protein SAAV_2239 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589094|gb|EFB94194.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282762395|gb|EFC02540.1| hypothetical protein SGAG_02579 [Staphylococcus aureus A8117]
 gi|285817840|gb|ADC38327.1| Hypothetical protein SA2981_2116 [Staphylococcus aureus 04-02981]
 gi|294967501|gb|EFG43540.1| hypothetical protein SMAG_02813 [Staphylococcus aureus A8819]
 gi|297176500|gb|EFH35767.1| hypothetical protein SLAG_02704 [Staphylococcus aureus A8796]
 gi|312830526|emb|CBX35368.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129747|gb|EFT85738.1| hypothetical protein CGSSa03_09560 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329728008|gb|EGG64454.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 356

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 115/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNIQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++ Q+   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S + A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFLQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|258424783|ref|ZP_05687658.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257845016|gb|EEV69055.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 356

 Score = 57.0 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 115/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  ++   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESIKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++ Q+   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S I A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFIQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|269792447|ref|YP_003317351.1| alanine racemase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100082|gb|ACZ19069.1| alanine racemase domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 364

 Score = 57.0 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 115/341 (33%), Gaps = 44/341 (12%)

Query: 13  LTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEK-IAPALYNAGVQDFFVTSVEEGV 69
           L  ++ N   + +L+G        V K    GL  E  +A A+ + G +    + V    
Sbjct: 11  LETVRFNASQVASLAGRVGVSIWGVTK----GLCGEPSLARAMVDGGCEAIGDSRVRNLA 66

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYALQV 128
            ++     A ++++      +   + +     ++SS+  L       +         L  
Sbjct: 67  HMKAAGVDAPMYLIRIPMLSEIPWMLEVADGCLVSSLETLEVIEGHCAAQRRVFQVVLMF 126

Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLIS 187
           D G  R G   Q A D      +    ++  + ++L C     ++ VN ++L    +++ 
Sbjct: 127 DLGDLREGFMPQMAEDVGRFCSSLSWVRVIGVGTNLGCFGGVLATRVNQLELLDVASVVR 186

Query: 188 HYKGIEASLASSSGILLGPNYH-------FQLTRPGISLYGGTDKINK---SHPMQTVVT 237
              G +  L S  G L  P              R G  +  GTD  N     +  Q  V 
Sbjct: 187 RESGFDVPLVSGGGTLALPLLETGQMPQGVNNLRVGEGIILGTDSTNGRDVPYLRQDGVE 246

Query: 238 AEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290
             A+++ +R+      GEL               + L A+ A+G            D+  
Sbjct: 247 LAAQVVELRRKPSVPRGELGRDAFGQVPSFVDRGERLRAILALG----------RQDTRP 296

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331
                L     I G         + D  + D+ D+  + +G
Sbjct: 297 EGLTPLNDGVLILG--------ASSDHMICDVEDASHVSLG 329


>gi|46117817|ref|XP_384835.1| hypothetical protein FG04659.1 [Gibberella zeae PH-1]
          Length = 366

 Score = 57.0 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 12/157 (7%)

Query: 48  IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPV 102
           IA  L  AG +   V  + E   +        +     + P + + + +      +L  V
Sbjct: 55  IAKKLVAAGAKGGCVAKLSEAEAITAAGFTDLLITCEIVGPAKVRRLVELFKKHQDLRIV 114

Query: 103 ISSVPQLTFY-SKLMSCGVSHPYALQVDT--GFNRLGLSLQEALDFTHNS---FNKKLGQ 156
           +      T   + L + G   P  + +D   G +R G+  + AL    +       +L  
Sbjct: 115 VDDADAATAINNALANSGSQDPINVLIDLDVGLHRTGVKPEGALPLARHIDTLKQMRLIG 174

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE 193
           +     HL    D         LE  R L    + ++
Sbjct: 175 VQGYEGHLQHLHDFQDR-KEQCLESMRILTETAQELK 210


>gi|301309990|ref|ZP_07215929.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides
           sp. 20_3]
 gi|300831564|gb|EFK62195.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides
           sp. 20_3]
          Length = 367

 Score = 56.6 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 81/268 (30%), Gaps = 42/268 (15%)

Query: 10  KIDLTALKN-------NWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +ID  AL         N      + G+  R    VK N       +++  L +AG++ F 
Sbjct: 12  RIDSPALAFYPDRISGNIELAKRIIGDTNRLRPHVKTN----KAAEVSRMLLDAGIRKFK 67

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI---------PVISSVPQLTFY 112
             ++ E   L      A   VL    P   KI    +LI          ++         
Sbjct: 68  CATIAEAEML--GHINAP-DVLLAYQPVGPKISRLLDLIKAYPATHYSCLVDQAENARAI 124

Query: 113 SKLMSCG-VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACA- 167
           S L   G ++    + ++ G NR G+  + A          K  Q+  +     H+  A 
Sbjct: 125 SALCEAGNITLDVFIDLNVGMNRTGVLPERAEALVDAILPLKSLQIIGLHGYDGHIHDAE 184

Query: 168 ----DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL---- 219
                  +    ++    FR +   +      +    G    P Y  +            
Sbjct: 185 LSVRCQGADAAYALTERVFREISRKFAYPLVKVM--GGTPTFPMYAKRKDCECSPGTFVF 242

Query: 220 --YGGTDKINKSHPMQTVVTAEARIILI 245
             +G  +      P +       R+I +
Sbjct: 243 WDWGYGNAY-PDMPFKVAALLITRVISV 269


>gi|262381465|ref|ZP_06074603.1| D-threonine aldolase [Bacteroides sp. 2_1_33B]
 gi|262296642|gb|EEY84572.1| D-threonine aldolase [Bacteroides sp. 2_1_33B]
          Length = 367

 Score = 56.6 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 81/268 (30%), Gaps = 42/268 (15%)

Query: 10  KIDLTALKN-------NWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +ID  AL         N      + G+  R    VK N       +++  L +AG++ F 
Sbjct: 12  RIDSPALAFYPDRISGNIELAKRIIGDTNRLRPHVKTN----KAAEVSRMLLDAGIRKFK 67

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI---------PVISSVPQLTFY 112
             ++ E   L      A   VL    P   KI    +LI          ++         
Sbjct: 68  CATIAEAEML--GHINAP-DVLLAYQPVGPKISRLLDLIKAYPATHYSCLVDQAENARAI 124

Query: 113 SKLMSCG-VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACA- 167
           S L   G ++    + ++ G NR G+  + A          K  Q+  +     H+  A 
Sbjct: 125 SALCEAGNITLDVFIDLNVGMNRTGVLPERAEALVDAILPLKSLQIIGLHGYDGHIHDAE 184

Query: 168 ----DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL---- 219
                  +    ++    FR +   +      +    G    P Y  +            
Sbjct: 185 LSVRCQGADAAYALTERVFREISRKFAYPLVKVM--GGTPTFPMYAKRKDCECSPGTFVF 242

Query: 220 --YGGTDKINKSHPMQTVVTAEARIILI 245
             +G  +      P +       R+I +
Sbjct: 243 WDWGYGNAY-PDMPFKVAALLITRVISV 269


>gi|239617968|ref|YP_002941290.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506799|gb|ACR80286.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 355

 Score = 56.6 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 117/358 (32%), Gaps = 63/358 (17%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYG----------LGCEKIAPALYNAGVQ 58
           ++I    +K N   +  L              YG           G EKIA A+  AGV+
Sbjct: 4   VEIYPNRVKMNTSYLRNLCA-----------GYGVEVVGVTKVTCGDEKIASAIVEAGVK 52

Query: 59  DFFVTSVEEGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
               + +E  +++R      A   +L      +     D   + +IS +  L  + +  +
Sbjct: 53  TIGESRIENIIRIRNSGMDNANFMLLRPPQRSRVSAALDVADVFLISDLDMLGCFMEAPN 112

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
               H     +DTG  R G+  +EA+     +       L+ I ++L C           
Sbjct: 113 LRKYHRMIYMIDTGDLREGVWYKEAIPELEEAVKIAGRYLAGIGTNLGCYG--GVLATPE 170

Query: 178 QLERFRTLISHY---KGIEASLASSSGILLGPNYHFQLTRPGISLY--GGTDKINKSHPM 232
           + E    L        G++  + S+      P         GI+ +  G +         
Sbjct: 171 KFEILLDLGEKLYKRTGVKLEIYSAGNTASLPLIENNTCPEGINQFRLGESIVCGTDVTN 230

Query: 233 QTVVT--------AEARIILIRK---ALAGELV--SYGGQKKLT--RDSLIAVAAIGYAD 277
             VV             II ++       GE+   ++G           L A+  +G  D
Sbjct: 231 NRVVPGTRQDTFILYGEIIELKTKPSVPEGEIGRDAFGRIPVFEDKGPRLRAILDMGELD 290

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYI 334
             P  L+ LDS+ S                      + D  + D+T+ S+  + GD I
Sbjct: 291 VIPSGLTPLDSKISILHA------------------SSDHLIVDLTESSVDYKTGDII 330


>gi|291166503|gb|EFE28549.1| amino acid racemase [Filifactor alocis ATCC 35896]
          Length = 370

 Score = 56.6 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 120/361 (33%), Gaps = 60/361 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKD-NAYGLGCEKIAPALYNAGVQDFFVTSV 65
           ++I+L  L  N  ++         +   VVK  ++Y      I+  L +AG      + +
Sbjct: 10  MEINLNHLYENAKNIVEQCKKHGISVTGVVKGTDSYEHSYNTISNTLLDAGCTSIADSRM 69

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
              +++R Y  + R+ +L      +   +       + SS+  L   ++  S   + H  
Sbjct: 70  NTIIQMRNYGFEGRLLLLRVPMISELDDVVHYADCSLQSSLTVLEKTNETASKHNIIHDV 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK--KLGQLSLIISHLACADDPSSHVNSVQLERF 182
            L +D G  R G   +  L    +   K  K   L  I ++L C        +++     
Sbjct: 130 ILMMDLGDLREGFFDENELIHVASIVEKKMKHLHLKGIGTNLGCYGSIRPDTSNL----- 184

Query: 183 RTLISHYKGIEASL----------ASSS--GILLGPNY-HFQLTRPGISLYGGTDKINKS 229
             L+S  + IE  +          A+SS   +L G         R G  +    D I+  
Sbjct: 185 GRLVSIAEKIEFHIGRKLEIISGGATSSLPLVLNGSIPKRINHLRVGEGIVLSRDLIDIW 244

Query: 230 HPMQTVV-----TAEARIILIRKALAGELVSYGGQKK---LTRDSLI-------AVAAIG 274
           +     +     T  A +I +R+         G         +   I       A+ AIG
Sbjct: 245 NIDMPFMHKDVYTISAEVIEVREKP---SYPIGTIFVDAFGNKPEYIDKGIRKKALLAIG 301

Query: 275 YADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDY 333
                              V       +K     I+G  + D  + DI D    I+ GD 
Sbjct: 302 ----------------KRDVGSVDSLIVKLENAEIIGG-SSDHLILDIEDVKEDIKEGDI 344

Query: 334 I 334
           I
Sbjct: 345 I 345


>gi|258646332|ref|ZP_05733801.1| amino acid racemase [Dialister invisus DSM 15470]
 gi|260403726|gb|EEW97273.1| amino acid racemase [Dialister invisus DSM 15470]
          Length = 356

 Score = 56.6 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 120/365 (32%), Gaps = 67/365 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF-- 61
           + RLKI L  ++ N   +  L      R   V K      G  ++A A    G+      
Sbjct: 2   YPRLKIYLKRIEENTRVVKQLCAGHGIRVMGVTKAC---CGAPELAEAYLAGGLAMIGDS 58

Query: 62  -VTSVE--EGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMS 117
            V +++  E ++   +  +  +         ++ +   D +L   + +V  +    +   
Sbjct: 59  RVANLKKLENIEAEKWLIRPPML-----SEIEDLVCYADVSLQSEMETVRAIN--KECEK 111

Query: 118 CGVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVN 175
            G  H   L +D G  R G +  +E +     +       L  I ++L C +   +    
Sbjct: 112 QGKCHKIILMMDLGDIREGYVDEEELIAAAVETEKLSRVDLYGIGTNLTCFSFIQADEEK 171

Query: 176 SVQLERFRTLISHYKGIEASLA---SSSGILL----GPNYHFQLTRPGISL--------Y 220
             +L   R  + +  G    +    +S+ + L    G        R G SL        Y
Sbjct: 172 MERLAEMRKKVENAAGHTLEIVSGGNSAALDLMMRGGICEGVDNFRLGESLLFGKERSRY 231

Query: 221 GGTDKINKSHPMQTVVTAEARIILIR---KALAGELV--SYGGQ--KKLTRDSLIAVA-A 272
                      +      E  ++  +       G     SYG +       +    V  A
Sbjct: 232 TFLPGTRNDGFI-----LECEVVEAKVKPSLPWGTAGVDSYGRKPVFTNRGEKRKKVICA 286

Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVG 331
           IG            D+E +  V  G    I G         + D  M D+TDS+   +VG
Sbjct: 287 IG--------RQDFDAETATPVDEG--ILILG--------ASSDHLMLDVTDSVKEYKVG 328

Query: 332 DYIQI 336
           D +++
Sbjct: 329 DIVEL 333


>gi|194335990|ref|YP_002017784.1| Orn/DAP/Arg decarboxylase 2 [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308467|gb|ACF43167.1| Orn/DAP/Arg decarboxylase 2 [Pelodictyon phaeoclathratiforme BU-1]
          Length = 379

 Score = 56.2 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 78/252 (30%), Gaps = 56/252 (22%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +D   L+ N+          +    VK N+     ++I    Y+AG   F V S+ E + 
Sbjct: 20  VDHEVLRANYREFKRHLPRVQAYFAVKANS----AKEIVKTFYDAGAS-FDVASMPEFLA 74

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNL-------IPVISSVPQL---------TFYSK 114
           +          +       Q+  I+D  +       IP +  + Q             +K
Sbjct: 75  VYEN-------IKSLTPEEQQDFIWDKIIYANPIKPIPTLKELDQYKPLVTFDNEDEIAK 127

Query: 115 LMSCGVSHPYALQV---DTGF-----NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
           + +   +    L++   +TG      ++ G    EA+D    +F   L  +  +  H+  
Sbjct: 128 IATYAPNTGLVLRIKVPNTGAMVELSSKFGADPGEAVDLIEKAFRSGLV-VEGLSFHVGS 186

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
                      Q   F+  I           + +  +   ++    T+  I   GG    
Sbjct: 187 -----------QCTNFQNYIQAL--------NLAANIFKESWERGYTQVKILDIGGGFPA 227

Query: 227 NKSHPMQTVVTA 238
                ++     
Sbjct: 228 PYDKNVRPFAEL 239


>gi|138895645|ref|YP_001126098.1| hypothetical protein GTNG_2001 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249582|ref|ZP_03148279.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
 gi|134267158|gb|ABO67353.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210876|gb|EDY05638.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
          Length = 370

 Score = 56.2 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 119/357 (33%), Gaps = 56/357 (15%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVK---DNAYGLGCEKIAPALYNAGVQD 59
           + + R+  D   L +N   +NA+  +      V K    N       +I  +LY  G + 
Sbjct: 2   DRYPRVTWDEKKLIHNARVLNAICKHHVEWIPVTKSVGAN------IEIVDSLYKQGYRK 55

Query: 60  FFVTSVEEGVKLRLYT--PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLM 116
           F  + ++    ++ Y       +  + GIH  + K +       ++S    +     + +
Sbjct: 56  FADSRLQNLKAIKEYDSSINTCLLRIPGIH--EIKDVITWADCSLVSEYKVIEALNQEAL 113

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           S G  H   L ++ G  R G+  +E +D   +           I ++L C        + 
Sbjct: 114 SQGKIHHIILMIELGDLREGIMPEELMDIGKHILKFPAIHWLGIGTNLTCFGGVLPTSDK 173

Query: 177 -VQLERFRTLISHYKGIEASLA---SSSGILLGPNYHFQLTRP-------GISLYGGTDK 225
             QL + +  +    G   S+    +SS   L      ++ R            +G    
Sbjct: 174 LAQLVQLKESVEKKLGYHLSVISGGNSSS--LHLLMSGEMPREINHLRLGESLFFGRETA 231

Query: 226 INKSHPMQT--VVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAAIGYA 276
            +K  P     +   EA +I I+       G +V                  A+ A+G  
Sbjct: 232 FSKQIPGMHHDIFLLEAEVIEIKDKPSYPQGIIVKNAFGETPHFTDKGIRRRAILALGEQ 291

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGD 332
           D     LS L    +    +GG               + D  + D+T+    I+VG 
Sbjct: 292 DV---PLSELTPVKNGIEIIGG---------------SSDHAILDVTEHHDQIQVGS 330


>gi|283471407|emb|CAQ50618.1| alanine racemase, N-domain family [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 356

 Score = 55.8 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 114/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++  +   ++++
Sbjct: 56  ESRLDNIISIADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHHINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S I A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFIQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|269837390|ref|YP_003319618.1| alanine racemase domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786653|gb|ACZ38796.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 366

 Score = 55.8 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 51/173 (29%), Gaps = 31/173 (17%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCE-----------KIAPALYNAGV 57
           L +  + L+ N   M A +                G             +I      AG 
Sbjct: 12  LVVHESILRRNVEEMAAFARE-------------HGVAMRPHLKTHKTAEITRMQREAGA 58

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ-----EKIIFDTNLIPVISSVPQLTFY 112
             F    + E   L        + + Y I   Q       ++    +   +  V      
Sbjct: 59  IGFTCAKLGEAEALADAGVLDDVLLAYQIVGEQKIRRLLALMDRIKVTVAVDGVEGAAAL 118

Query: 113 SKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISH 163
           S      G +    L+++TG +R G+   E AL            +L+ I++H
Sbjct: 119 SAACRDAGKTLDVRLEINTGLDRAGVLPGEPALALAREVMQMPGLRLAGIMTH 171


>gi|160902435|ref|YP_001568016.1| alanine racemase domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360079|gb|ABX31693.1| alanine racemase domain protein [Petrotoga mobilis SJ95]
          Length = 354

 Score = 55.8 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 12/160 (7%)

Query: 13  LTALKNNWHSMNALSGNART-AA----VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L  ++ N   + +L  ++         VV       G   IA AL   G+     + ++ 
Sbjct: 9   LERIQENAKYLKSLCADSGVEMVGVTKVV------CGEPTIARALKECGINILGDSRIQN 62

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126
             K+R    +    +L      +   + +     +IS +        + S          
Sbjct: 63  IKKMRNSGIKGPFMLLRIPMFSELDDVANYVDYTLISDLEITKKLGTVSSKFNKRSKIIY 122

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
            VD G  R G+  ++A+     + + +  ++  I ++L C
Sbjct: 123 MVDVGDLREGVWFEKAVSEISKALDIEGIEIVGIGTNLGC 162


>gi|323438672|gb|EGA96415.1| hypothetical protein SAO11_2500 [Staphylococcus aureus O11]
 gi|323441747|gb|EGA99390.1| hypothetical protein SAO46_2302 [Staphylococcus aureus O46]
          Length = 356

 Score = 55.8 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 117/355 (32%), Gaps = 75/355 (21%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIF-------VLYGIHPGQEKIIF---DTNLIPVISSVPQLTF 111
            + ++           + I        +L      +   +    D ++   +S++ Q+  
Sbjct: 56  ESRLD--------NITS-IADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINE 106

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----A 167
            ++++  G  H   L VD    R G+   + LD+     + K      +  +  C    A
Sbjct: 107 VAEVL--GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDA 164

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYG 221
                      + RF + +    G    + S     + P   +         R G +L+ 
Sbjct: 165 PSDDDIFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFR 221

Query: 222 GTDKINK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYAD 277
           G D       +   Q  +T EA I+ I+                T +S I A+  IGY D
Sbjct: 222 GVDTTTNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFIQAIVDIGYLD 271

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
                +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 272 TKVDNISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|317124840|ref|YP_004098952.1| alanine racemase domain protein [Intrasporangium calvum DSM 43043]
 gi|315588928|gb|ADU48225.1| alanine racemase domain protein [Intrasporangium calvum DSM 43043]
          Length = 346

 Score = 55.4 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 88/330 (26%), Gaps = 53/330 (16%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE---GVKLRLYTPQARIFVLYGIHP 88
              VVK N YG G E +        V    V +  E    +          + V+     
Sbjct: 26  LVPVVKGNGYGFGREVLYAEANRLRVTMIAVGTYAEVPGAL----AGFSGDVLVMEPFRA 81

Query: 89  GQEKIIF---DTNLIPV-----ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ 140
                I       L  V     + ++        L++   +    ++  T   R G    
Sbjct: 82  AIHAAIHAATQAGLPSVDDGRLVHTITTRVDLDGLLAANPAARTVVEGLTSMGRFGAPAA 141

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS- 199
              D          G+   +  HL              + RF   +   +    S  ++ 
Sbjct: 142 RVGDLVAA------GRGEGVTLHLPLGSGHVDE-----ISRFVEAVGGIRPFFVSHTTAD 190

Query: 200 --SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257
             + +      H    R G  L+            +      + ++ +R    G+ V Y 
Sbjct: 191 EVAALRRRFPEHRFAARVGTDLWLAD---------RAAYEMRSHVLDVRPLAKGDRVGYR 241

Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF---IKGYMVP-ILGKI 313
            + +      + V + G + G  +      +          +G    +     P  +G  
Sbjct: 242 QRPQAAG--HLVVVSGGTSHGVAMESPASAATARSRAIAVAEGMLEAVHRVRSPFTVGGT 299

Query: 314 T--------MDMTMFDITDS-LSIEVGDYI 334
                    M  ++  + D      VGD +
Sbjct: 300 MPRFAEPPHMQCSLLALPDGVAPPSVGDTV 329


>gi|149180769|ref|ZP_01859272.1| Serine racemase [Bacillus sp. SG-1]
 gi|148851559|gb|EDL65706.1| Serine racemase [Bacillus sp. SG-1]
          Length = 365

 Score = 55.4 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 9/129 (6%)

Query: 43  LGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIF-----D 96
               +IA     AG       ++ E   +        I + Y I  P + K +      D
Sbjct: 44  HKSVEIAKLQLQAGAIGITTATIPEAEAMAAGGIN-DILIAYPIASPQKIKRLIALLEQD 102

Query: 97  TNLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKL 154
             L   + +  QLT    +L     +    ++V++G NR G+   ++A+    N      
Sbjct: 103 VKLKISVDNPVQLTHLQNELEHTPFTLEVWIKVNSGLNRCGVEPGKDAVALAKNIMGCTK 162

Query: 155 GQLSLIISH 163
            +L  I++H
Sbjct: 163 LKLGGILTH 171


>gi|226949272|ref|YP_002804363.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           A2 str. Kyoto]
 gi|226843119|gb|ACO85785.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           A2 str. Kyoto]
          Length = 355

 Score = 55.4 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 118/352 (33%), Gaps = 49/352 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFFVTSV 65
           ++I+L  + +N   +  L        V+  K        EK +   +   G++      +
Sbjct: 8   VEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFC----AEKSVVETIIKEGIKTIADARM 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPY 124
           +  +K++    +    +L      +   + + + I + S +  +   SK        H  
Sbjct: 64  KNLMKIQDLKCEK--LLLRIPMKSEVTKVIEYSDISLNSELEIIKELSKEARKVNKIHKI 121

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQLERF 182
            L VD G  R G+  ++AL            +   + ++L C     P  +     LE  
Sbjct: 122 ILMVDLGDLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLEIK 181

Query: 183 RTLISHYKGIEASLA---SSSG---ILLGPNYHF-QLTRPGISLYGGTDKI---NKSHPM 232
             +    K I+ S+    +SS    I+           R G ++  GT+       +   
Sbjct: 182 NQIEKELK-IKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAVILGTETAYGQKLNDFY 240

Query: 233 QTVVTAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +  +T    II +++      G    +        +       A+ A+G  D   + L G
Sbjct: 241 EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQD---IKLDG 297

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
           L  + +    LG                + D  + D+T      ++GD ++ 
Sbjct: 298 LIPKDNEIEILGA---------------SSDHLLLDLTKCKNQYKIGDAVEF 334


>gi|254505511|ref|ZP_05117658.1| Alanine racemase, N-terminal domain family [Vibrio parahaemolyticus
           16]
 gi|219551628|gb|EED28606.1| Alanine racemase, N-terminal domain family [Vibrio parahaemolyticus
           16]
          Length = 354

 Score = 55.4 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 114/354 (32%), Gaps = 57/354 (16%)

Query: 11  IDLTALKNNWHSMNAL--------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           I L  + +N H++ +         +G  + A      AY     ++  A+   G+     
Sbjct: 9   IHLDTITHNAHNLVSACERFGVKPAGVTKLAC-----AY----PEVGEAILAGGIGILAD 59

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVS 121
           + ++   KLR         +L      Q + +     I + S +  L   + + +     
Sbjct: 60  SRIQNLKKLRHL--DGETMLLRIPAISQAREVVQYADISLNSELETLQALAIEAVKQHKI 117

Query: 122 HPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179
           H   +  D G  R G    +E L         +  QL  + ++LAC       + N  QL
Sbjct: 118 HQVIIMHDMGDLREGSFYQEETLQLAREVMKLEGLQLVGLGTNLACYGGVEPSIDNQTQL 177

Query: 180 ERFRTLISHYKGIEASL---ASSSGILLG-----PNYHFQLTRPGISLYG-GTDKINKSH 230
                 I     I  S    ASS+G+ L      P    QL      L G G +     +
Sbjct: 178 IALAQQIETEHNIRLSYLSGASSAGLPLMLRGELPKGINQLRLGASVLMGIGLNDDPVPN 237

Query: 231 PMQTVVTAEARIILIR---KALAGEL----VSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283
             Q      A I+ I+      A         +            A+ AIG  D   + +
Sbjct: 238 TRQDTFDLTAEIVEIKVKPSVPAESTALDAFGHKPTFTDRGLRKRAICAIGKQD---IDI 294

Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQI 336
           S +  +    + +GG               + D  + DI D  +   VG  I+ 
Sbjct: 295 SQMTPKDRNIIVIGG---------------SSDHLILDINDSDMPYHVGSLIEF 333


>gi|134097855|ref|YP_001103516.1| Orn/DAP/Arg decarboxylase 2 [Saccharopolyspora erythraea NRRL 2338]
 gi|291005509|ref|ZP_06563482.1| Orn/DAP/Arg decarboxylase 2 [Saccharopolyspora erythraea NRRL 2338]
 gi|133910478|emb|CAM00591.1| Orn/DAP/Arg decarboxylase 2 [Saccharopolyspora erythraea NRRL 2338]
          Length = 402

 Score = 55.1 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL A++ N+ ++ +   +AR    VK N A      ++   L   G   F V S  E
Sbjct: 40  LVVDLAAVRRNYQALRSALPDARICYAVKANPA-----PEVVATLAALG-SSFDVASPGE 93

Query: 68  GVKLRLYTPQARIFVLYGIH---PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
            + L L    +   + YG     P          +   ++            + G     
Sbjct: 94  -IDLCLAQGASPESISYGNTIKKPRDIARAHRLGVRLFVTDSEADLLNIAESAPGSQVFC 152

Query: 125 ALQVD-----TGFNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVN-- 175
            + VD     T F R  G + Q A+     +    L     +  H+     DPS+  +  
Sbjct: 153 RVLVDNKGSRTPFGRKFGCTPQTAVRLLRRAAELGL-DPYGVSFHIGSQQLDPSAWEHGI 211

Query: 176 SVQLERFRTLISHYKGIEASLASSSGIL 203
               E F  L  H  G+   + +  G L
Sbjct: 212 RAAREVFDGLAEH--GVTPRMVNLGGGL 237


>gi|170755191|ref|YP_001781537.1| alanine racemase domain-containing protein [Clostridium botulinum
           B1 str. Okra]
 gi|169120403|gb|ACA44239.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           B1 str. Okra]
          Length = 355

 Score = 55.1 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 108/353 (30%), Gaps = 51/353 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFFVTSV 65
           ++I+L  + +N   +  L        V+  K        EK +   +   G++      +
Sbjct: 8   VEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFC----AEKSVVETIIKEGIKTIADARM 63

Query: 66  EEGVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123
                L ++        +L      +   + + + + + S +  +   SK        H 
Sbjct: 64  ---KNLMKIQGLNCEKLLLRIPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNKIHK 120

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181
             L VD G  R G+  ++AL            +   + ++L C     P  +     LE 
Sbjct: 121 IILMVDLGDLREGVLPKDALSAVKEIIKLPNLKFIGLGTNLTCYGGVLPDENNLGKLLEI 180

Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY--GGTDKINKSHPMQTVV--- 236
              +    K I+ S+ S                 GI+    G    + +       +   
Sbjct: 181 KNQIEKELK-IKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLNDF 239

Query: 237 -----TAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284
                T    II +++      G    +        +       A+ A+G  D   + L 
Sbjct: 240 YEDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQD---IKLD 296

Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
           GL  + +    LG                + D  + D+T      ++GD ++ 
Sbjct: 297 GLIPKDNEIEILGA---------------SSDHLLLDLTKCKNQYKIGDTVEF 334


>gi|206901254|ref|YP_002251767.1| amino acid racemase [Dictyoglomus thermophilum H-6-12]
 gi|206740357|gb|ACI19415.1| amino acid racemase [Dictyoglomus thermophilum H-6-12]
          Length = 362

 Score = 55.1 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 116/362 (32%), Gaps = 71/362 (19%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYG----------LGCEKIAPALYNAGVQ 58
           L+I+L A+ +N   +     +           YG          LG  KIA  L  AGV 
Sbjct: 9   LEINLPAIYHNAKIIVEKGRD-----------YGILIDGVTKVSLGDPKIAEVLVEAGV- 56

Query: 59  DFFV--TSVEEGVKLRLYTPQA--RIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYS 113
            F +  + +E   +++         +  L  +   +E+I   D +L   +S++       
Sbjct: 57  -FGISDSRIESIKRMKESNLNTNFTLIRLPCLSQVEEEIKYADISLNSELSTLR--ALNE 113

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSS 172
                   H   + V+ G  R G+  +E L F        K  +L  + ++  C      
Sbjct: 114 AGEKLKKKHRVVIMVEMGDIREGIWNREELYFVVREVLKMKNLELFGVGTNFTCFG--GV 171

Query: 173 HVNSVQLERFRTLISHYK-GIEASLA-----SSSGI-LLGP---NYHFQLTRPGISLYGG 222
                +   F  ++   K     S A     +SS I LL            R G  +  G
Sbjct: 172 IPTEEKYMDFIEIVDDLKRKFNISFAIVSGGNSSTIPLLFKGKIPLGVNHLRIGEGIMLG 231

Query: 223 TDKINK---SHPMQTVVTAEARIILIRK-------ALAGELVSYGGQKKLTRDSLIAVAA 272
            +   +                I+ +++        +  +   +    K       A+  
Sbjct: 232 RETAYRKVIPGARTDTFRFIGEILEVKEKPSVPWGVIGEDAFGHKPSFKARGVRKRAILN 291

Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
            G                      G K  I G  V +LG  + D T+ DI++   ++VGD
Sbjct: 292 FG---------------RQDIDPEGIKPEILG--VEVLGATS-DYTVVDISERDDLKVGD 333

Query: 333 YI 334
            I
Sbjct: 334 SI 335


>gi|239929460|ref|ZP_04686413.1| alanine racemase [Streptomyces ghanaensis ATCC 14672]
          Length = 37

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370
           +   +D A A+GT  Y+++ RIG R  + + 
Sbjct: 3   EPTAEDWAQAAGTIAYEIVTRIGGRVPRVHV 33


>gi|153938559|ref|YP_001391298.1| alanine racemase domain-containing protein [Clostridium botulinum F
           str. Langeland]
 gi|152934455|gb|ABS39953.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           F str. Langeland]
 gi|295319329|gb|ADF99706.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           F str. 230613]
          Length = 355

 Score = 54.7 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 108/352 (30%), Gaps = 49/352 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFFVTSV 65
           ++I+L  + +N   +  L        V+  K        EK +   +   G++      +
Sbjct: 8   VEINLKNIAHNIKQLIDLCNMKEIKPVIVTKSFC----AEKSVVETIIKEGIKTIADARM 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPY 124
           +  +K++    +    +L      +   + + + + + S +  +   SK        H  
Sbjct: 64  KNLMKIQDLNCEK--LLLRIPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNKIHKI 121

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQLERF 182
            L VD G  R G+   +AL            +   + ++L C     P  +     LE  
Sbjct: 122 ILMVDLGDLREGVLPNDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLEIK 181

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY--GGTDKINKSHPMQTVV---- 236
             +    K I+AS+ S                 GI+    G    + +       +    
Sbjct: 182 NQIEKELK-IKASIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLNDFY 240

Query: 237 ----TAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
               T    II +++      G    +        +       A+ A+G           
Sbjct: 241 EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALG----------Q 290

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
            D +    +    +  I G         + D  + D+T      ++GD ++ 
Sbjct: 291 QDIKLDDLIPKDNEIEILG--------ASSDHLLLDLTKCKNQYKIGDTVEF 334


>gi|145485664|ref|XP_001428840.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395928|emb|CAK61442.1| unnamed protein product [Paramecium tetraurelia]
          Length = 138

 Score = 54.7 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 9   LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L++D     +N   +   +G+  +  AV+K +AYG G E +      + V+        E
Sbjct: 13  LEMDSEVYIHNIKELRVSTGDKVKICAVMKADAYGHGIEVMMDTFVKSIVEYISAIDNYE 72

Query: 68  GVKLRLYTPQARI--FVLYGIHPGQEKIIFD-----TNLIPVISSVPQLTFYSKLMS 117
              L+ +  +  +    L  I P  ++ + +      ++  V  S+ +  ++SK+ S
Sbjct: 73  FRILQKWFKEHNVQHVRLLRIAPDTKEELIEFIINNWDVEEVFGSLEKGQYFSKISS 129


>gi|148379935|ref|YP_001254476.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|153933254|ref|YP_001384234.1| alanine racemase domain-containing protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153937081|ref|YP_001387774.1| alanine racemase domain-containing protein [Clostridium botulinum A
           str. Hall]
 gi|148289419|emb|CAL83515.1| putative alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|152929298|gb|ABS34798.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           A str. ATCC 19397]
 gi|152932995|gb|ABS38494.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
           A str. Hall]
          Length = 355

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 109/357 (30%), Gaps = 59/357 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVV--------KDNAYGLGCEKIAPALYNAGVQDF 60
           ++I+L  + +N   +  L        V+        K          +   +   G++  
Sbjct: 8   VEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFCSEKS---------VVETIIKEGIKTI 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119
               ++  +K++    +    +L      +   + + + I + S +  +   SK      
Sbjct: 59  ADARMKNLMKIQDLKCEK--LLLRIPMKSEVSKVIEYSDISLNSELEIIKELSKEARKVN 116

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSV 177
             H   L VD G  R G+  ++AL            +   + ++L C     P  +    
Sbjct: 117 KIHKIILMVDLGDLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGK 176

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY--GGTDKINKSHPMQTV 235
            LE    +    K I+ S+ S                 GI+    G    + +       
Sbjct: 177 LLEIKNQIEKELK-IKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQK 235

Query: 236 V--------TAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLIAVAAIGYADGYP 280
           +        T    II +++      G    +        +       A+ A+G  D   
Sbjct: 236 LNDFYEDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQD--- 292

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336
           + L GL  + +    LG                + D  + D+T      ++GD ++ 
Sbjct: 293 IKLDGLIPKDNEIEILGA---------------SSDHLLLDLTKCKNQYKIGDTVEF 334


>gi|157363014|ref|YP_001469781.1| ornithine decarboxylase [Thermotoga lettingae TMO]
 gi|157313618|gb|ABV32717.1| Ornithine decarboxylase [Thermotoga lettingae TMO]
          Length = 376

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           L IDL  ++ N+  + A   + +    +K N+      +I   L + G  +F V S+ E 
Sbjct: 19  LIIDLDIIEENYRKLAAAIPDCKIFYAIKANS--H--PRILERLRDLG-SNFDVASIGEI 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
            KL      A   +       ++ I    +L   + +        K+          ++V
Sbjct: 74  KKLMNLGVTADRMIFANPIKREKDIAEAYDLGVYLFAADSTMELDKIAENAPGSQVVIRV 133


>gi|296327458|ref|ZP_06870004.1| serine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155284|gb|EFG96055.1| serine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 369

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 59/191 (30%), Gaps = 19/191 (9%)

Query: 1   MHSNEFLRLKI--DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M   E     I  ++ ALKNN      L          ++K         +I       G
Sbjct: 1   MKKKELKTPTILLNIEALKNNIKKYQKLCTEYKKELWPMIKT----HKSMEIVEMQIKEG 56

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI----PVISSVPQLTFY 112
                  +++E         +    ++Y      E+ I     I      I  +  L   
Sbjct: 57  ATGALCGTLDEVEACCQIGIKK---IMYAYPVASEENIKRIIEISKKTEFIIRLDSLEAA 113

Query: 113 SKLMSCGVS----HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
            K+     +      Y + VD+G +R G+SL+  L F       K  +L  I SH     
Sbjct: 114 IKINKMAETENIIINYNIIVDSGLHRFGVSLKNLLTFAEELKKLKYLKLKGISSHPGHVY 173

Query: 169 DPSSHVNSVQL 179
             +   +  Q 
Sbjct: 174 SSTCEADIQQY 184


>gi|89902638|ref|YP_525109.1| hypothetical protein Rfer_3879 [Rhodoferax ferrireducens T118]
 gi|89347375|gb|ABD71578.1| Protein of unknown function UPF0001 [Rhodoferax ferrireducens T118]
          Length = 239

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 69/199 (34%), Gaps = 23/199 (11%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDT-NL 99
             +I    + AG + F    ++E V+    LR    +     +  I   + +++ +  + 
Sbjct: 43  APEIVTQAFEAGQRAFGENYIQEAVEKISHLRHLPLE--WHCIGPIQSNKTRLVAEHFDW 100

Query: 100 IPVISSVPQLTFYSKLMSCGVS---HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ 156
           +  +  +      S     G         + VD G ++ G+S  EAL            +
Sbjct: 101 VQTLDRLKIAQRLSDQRPAGRPPLQVCIQVNVDGGASKSGVSPSEALALAQRVAELPNLR 160

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA--------SLASSSGILLGPNY 208
           L  I+S      +P+    +     F  + + +  + A        S+  S+ +      
Sbjct: 161 LRGIMS----IPEPTPDFVAA-CALFARVKAVFDALNAEGLALDTLSMGMSADMEAAIQS 215

Query: 209 HFQLTRPGISLYGGTDKIN 227
              + R G +++GG   I 
Sbjct: 216 GSTMVRVGTAIFGGRPPIK 234


>gi|331694412|ref|YP_004330651.1| alanine racemase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949101|gb|AEA22798.1| alanine racemase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 374

 Score = 53.9 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 48/165 (29%), Gaps = 25/165 (15%)

Query: 11  IDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +DL  L  N       +         + +T              +IA     AG     V
Sbjct: 31  VDLDVLTRNLDRAAEHARAAGLRLRPHVKT----------HKSPEIARRQVEAGAVGLTV 80

Query: 63  TSVEEGVKLRLYTPQA-----RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
            +V E                 ++           +    +L   + S         L  
Sbjct: 81  ATVSEAEIFCRAGATDLFVAYPVWAAGPRGARLRALAQRVDLRVGVDSPEAARHLG-LAL 139

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
            G      +++D+G  R G++ + A +    + ++   +++ + +
Sbjct: 140 AGTGASVLVEIDSGMRRSGVAPERAPEVAR-AADRAGLRVAGVFT 183


>gi|145485666|ref|XP_001428841.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395929|emb|CAK61443.1| unnamed protein product [Paramecium tetraurelia]
          Length = 185

 Score = 53.5 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQL 179
              + V+T   R+G         T    N K+     I++HLA   +           Q+
Sbjct: 3   KTHINVETAMGRMGFRKVGDFKLTQQITNLKVV---GIMTHLAREYEAPPNDEIATRAQV 59

Query: 180 ERFRTLISHY---KGIEASLASSSG 201
           + F+T IS       +   +A+S+G
Sbjct: 60  DLFKTFISQLNLEPTVIKHVANSAG 84


>gi|49484398|ref|YP_041622.1| hypothetical protein SAR2269 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257423669|ref|ZP_05600098.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257426346|ref|ZP_05602748.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257428988|ref|ZP_05605375.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257431634|ref|ZP_05607997.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257434593|ref|ZP_05610644.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|282902084|ref|ZP_06309977.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906526|ref|ZP_06314374.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909492|ref|ZP_06317305.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282915031|ref|ZP_06322808.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282920758|ref|ZP_06328476.1| hypothetical protein SASG_00939 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925663|ref|ZP_06333311.1| hypothetical protein SARG_00990 [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958956|ref|ZP_06376399.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497440|ref|ZP_06665294.1| hypothetical protein SCAG_00013 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293511011|ref|ZP_06669708.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus M809]
 gi|293549617|ref|ZP_06672289.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428766|ref|ZP_06821390.1| hypothetical protein SIAG_02004 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589749|ref|ZP_06948390.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|49242527|emb|CAG41247.1| hypothetical protein SAR2269 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272687|gb|EEV04789.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275977|gb|EEV07428.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279469|gb|EEV10056.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282513|gb|EEV12645.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285189|gb|EEV15305.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|282312492|gb|EFB42896.1| hypothetical protein SARG_00990 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282315173|gb|EFB45557.1| hypothetical protein SASG_00939 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282320752|gb|EFB51086.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282326602|gb|EFB56902.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282329425|gb|EFB58946.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282596543|gb|EFC01502.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus
           C160]
 gi|283789515|gb|EFC28340.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290918664|gb|EFD95740.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096371|gb|EFE26629.1| hypothetical protein SCAG_00013 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291465998|gb|EFF08527.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127115|gb|EFG56757.1| hypothetical protein SIAG_02004 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297578260|gb|EFH96973.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|315193109|gb|EFU23509.1| hypothetical protein CGSSa00_09322 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 356

 Score = 53.5 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 114/350 (32%), Gaps = 65/350 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNIQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + ++  + +        +       P            D ++   +S++  +   ++++
Sbjct: 56  ESRLDNIISMADQDLTYTLLR----TPAKKEISDMIEKVDMSIQTELSTIHHINEVAEVL 111

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSS 172
             G  H   L VD    R G+   + LD+     + K      +  +  C    A     
Sbjct: 112 --GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDKI 226
                 + RF + +    G    + S     + P   +         R G +L+ G D  
Sbjct: 170 IFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTT 226

Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADGYPLT 282
                +   Q  +T EA I+ I+                T +S I A+  IGY D     
Sbjct: 227 TNQAIAMLYQDAITLEAEILEIK----------PRVNTQTHESFIQAIVDIGYLDTKVDN 276

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
           +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 277 ISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|308178610|ref|YP_003918016.1| alanine racemase-like protein [Arthrobacter arilaitensis Re117]
 gi|307746073|emb|CBT77045.1| alanine racemase-like protein [Arthrobacter arilaitensis Re117]
          Length = 366

 Score = 53.5 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 36/264 (13%)

Query: 8   RLKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ++ +D+  L+ N   +          L  +A+T             ++IA    NAG   
Sbjct: 12  QILVDVAKLEKNIDRVAHRVASQGLKLRPHAKT----------HKMQEIAERQMNAGAAG 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE------KIIFDTNLIPVISSVPQLTFYS 113
             V +V E +   L+   A+IF+ Y +   Q       +++    L     SV  +   +
Sbjct: 62  LTVATVGEALSFALHGV-AKIFIAYPLWVDQAQATRILELMRRAKLSIGTDSVEAVEQMA 120

Query: 114 KLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS---HLACADD 169
           K++   VS     +++D+G +R G+S Q A++    +    + ++  + +   H    + 
Sbjct: 121 KMLGEKVSKVKLIIEIDSGHHRSGVSPQGAVEIAEAARAVGM-RVHGVFTFPGHSYAPEG 179

Query: 170 PSSHVNSVQLERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD- 224
             + +N               + +     S  S+    L  N      RPG+ ++G    
Sbjct: 180 IDAALNDEHKALAEAACLLRDAGHTIKRISGGSTPTAELSDNAVLTEVRPGVYVFGDAQQ 239

Query: 225 -KINKSHPMQTVVTAEARIILIRK 247
            ++ +       +T  + +I   +
Sbjct: 240 FELGRVRWEDISLTVASTVISRHE 263


>gi|298242855|ref|ZP_06966662.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297555909|gb|EFH89773.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 370

 Score = 53.5 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 20/182 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           L +DL  L+ N       +  AR   V     +K         +IA     AG       
Sbjct: 16  LLVDLARLEKNIRRYADSAAKAR---VRLRPHIKT----HKTLEIAKMQLQAGAGGITAA 68

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQ-----EKIIFDTNLIPVISSVPQLTFYSKLMS- 117
            + E         +  IFV Y I   +      ++     LI  + S   +   S+  S 
Sbjct: 69  KLGEAEVFAEAGIE-DIFVAYPIIGPEKALRAARLAQHCRLIVGVESEKGVQQLSEAASQ 127

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            G +    +++D+G  R G+  + A        +     L  I +    A  P +     
Sbjct: 128 IGSTLLVRVEIDSGLGRTGVGQEAAGKLCRQVLDAPGLSLDGIFT-FRGASFPEASSRDP 186

Query: 178 QL 179
           Q+
Sbjct: 187 QI 188


>gi|309779212|ref|ZP_07673975.1| alanine racemase, N- domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308922016|gb|EFP67650.1| alanine racemase, N- domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 382

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 55/181 (30%), Gaps = 32/181 (17%)

Query: 11  IDLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           IDL  +++N   M                  +                +  A   AG Q 
Sbjct: 18  IDLPRMQHNIARMQHRMNALGVKFRPHVKTTKCL-------------DVVRAQVAAGAQG 64

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVP-QLTFYS 113
             V++++E         +  I    GI   +            +L  V+ +         
Sbjct: 65  ITVSTLKEAEAFFAAGIK-DILYAVGIVATKLPRAMALRKRGCDLKLVVDNAEAAHAVVD 123

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
              + G      ++VDT  +R G++ + +AL             +S +++H   + D + 
Sbjct: 124 YARAHGERCEVWIEVDTDGHRSGITPEQDALLEVGRILKNGGIDVSGVMTHAGSSYDLND 183

Query: 173 H 173
            
Sbjct: 184 R 184


>gi|310658592|ref|YP_003936313.1| ornithine racemase [Clostridium sticklandii DSM 519]
 gi|226885219|emb|CAQ42981.1| ornithine racemase [Clostridium sticklandii DSM 519]
 gi|308825370|emb|CBH21408.1| ornithine racemase [Clostridium sticklandii]
          Length = 353

 Score = 53.1 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 117/371 (31%), Gaps = 80/371 (21%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60
           + ++ ID+  L++N   +  L   G  +TA VVK    N            L +  V  F
Sbjct: 2   YPKITIDINKLRDNATFIKNLCEKGGCKTALVVKSMCAN---HDIV---KELDSVEVDYF 55

Query: 61  FVTSVEEGVKLRLY----------TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT 110
             + +                       RI +L      + + +     I + S +  L 
Sbjct: 56  ADSRI-------QNLKKLKDLKTKKMLLRIPMLC-----EVEDVVKYADISMNSELDTLK 103

Query: 111 FYSKLMSC-GVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLAC-- 166
             +K        H   + VD G  R G    ++  +        +  ++  I  +L C  
Sbjct: 104 ALNKAAKTLNKVHSVIIMVDLGDLREGYFEAEDLKENIKEIIKLENIEIKGIGVNLTCYG 163

Query: 167 ADDPSSHVNSVQLERFRTLISHYK---GIEASLA---SSSGILL-----GPNYHFQLTRP 215
           A  P +      L R   +    +    +E  +    +SS I L      P     L   
Sbjct: 164 AVIPKND----NLSRLCDIADELRTEFNLELPIVSGGNSSSIYLIDKGELPEGITNLRVG 219

Query: 216 GISLYGGTDKINKSHPMQT--VVTAEARIILIRK---ALAGELV----SYGGQKKLTRDS 266
              L G      +        V   + +I+ +++      GE+           +     
Sbjct: 220 ESMLLGRETAYGEDIIGMNNDVFELKCQIVELKEKPSLPIGEIGVDAFGNKPYYEDKGIR 279

Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
             A+ AIG            D++ S  + +  K  I G         + D  + D++DS 
Sbjct: 280 KRAILAIG----------QQDTDISSLMPIDDKLEILG--------ASSDHLIVDVSDSN 321

Query: 327 -SIEVGDYIQI 336
            S +VGD I  
Sbjct: 322 TSYKVGDIITF 332


>gi|282864522|ref|ZP_06273577.1| alanine racemase domain protein [Streptomyces sp. ACTE]
 gi|282560461|gb|EFB66008.1| alanine racemase domain protein [Streptomyces sp. ACTE]
          Length = 362

 Score = 53.1 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 104/323 (32%), Gaps = 42/323 (13%)

Query: 32  TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91
              V K N YG G  ++       G     V +V+E  + + + P   + VL     G+ 
Sbjct: 26  LVPVCKGNGYGFGHHRLMRETTRLGTGLAAVGTVQEAARAQDFYP-GDLLVLTPYRNGEA 84

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
                   I V+SS       +        H   +++ +   R G++  +          
Sbjct: 85  SPALSDRTIRVVSSPGHCDGLA-------GHRVVVELRSSMRRHGITEADLPAL---RPV 134

Query: 152 KKLGQLSLIISHLA---CADDPSSHVNSVQLERFRTLISHYKGIEASLASS---SGI-LL 204
               +      HL          +   +  + R R      + +  S  S+   +G+   
Sbjct: 135 MSGWEFEGFSIHLPLNRVGGAGGAEEVASWVRRLREERMPLRQVFVSHLSAEEMAGLHAE 194

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
            P   F+L R G  L+ G  K              +R++ + +   G  +  G ++  + 
Sbjct: 195 FPGTRFRL-RTGTKLWLGAPK---------ATRYTSRVLDVTRPERGRGLGAGRRRPASG 244

Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIK--------GYMVPILGK 312
             L+ V + G + G     P TLSGL       V +G              G        
Sbjct: 245 PHLV-VVSGGVSHGVGLRAPRTLSGLRDRARHLVGIGHACLDHHLSPFVWDGVRCRFAAP 303

Query: 313 ITMDMTMFDI-TDSLSIEVGDYI 334
             +  ++  +  D    +VGD +
Sbjct: 304 PRLQESVLLVRGDGPPPKVGDEV 326


>gi|282911745|ref|ZP_06319541.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282323441|gb|EFB53757.1| alanine racemase domain-containing protein [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|312437404|gb|ADQ76475.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 356

 Score = 53.1 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 114/355 (32%), Gaps = 75/355 (21%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFF 61
              + I+++ +K N   +  +  S N +   V+K        G   I  +L   G+    
Sbjct: 1   MAHVNINISKIKYNAKVLQTVFQSKNIQFTPVIKCIA-----GDRTIVESLKALGINHVA 55

Query: 62  VTSVEEGVK----------LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF 111
            + ++  +           LR    +  I               D ++   +S++  +  
Sbjct: 56  ESRLDNIISMADQYLTYTLLRTPA-KKEI--------SDMIEKVDMSIQTELSTIHHINE 106

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----A 167
            ++++  G  H   L VD    R G+   + LD+     + K      +  +  C    A
Sbjct: 107 VAEVL--GKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDA 164

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYG 221
                      + RF + +    G    + S     + P   +         R G +L+ 
Sbjct: 165 PSDDDIFM---INRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFR 221

Query: 222 GTDKINK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYAD 277
           G D       +   Q  +T E  I+ I+                T +S I A+  IGY D
Sbjct: 222 GVDTTTNQAIAMLYQDAITLETEILEIK----------PRVNTQTHESFIQAIVDIGYLD 271

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332
                +S +D   +                 ILG  + D  M D+      +VGD
Sbjct: 272 TKVDNISPMDQHIN-----------------ILGA-SSDHLMLDLNGQGHYQVGD 308


>gi|150007967|ref|YP_001302710.1| D-threonine aldolase [Parabacteroides distasonis ATCC 8503]
 gi|256840860|ref|ZP_05546368.1| D-threonine aldolase [Parabacteroides sp. D13]
 gi|298376682|ref|ZP_06986637.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides
           sp. 3_1_19]
 gi|149936391|gb|ABR43088.1| D-threonine aldolase, metal-activated pyridoxal enzyme
           [Parabacteroides distasonis ATCC 8503]
 gi|256738132|gb|EEU51458.1| D-threonine aldolase [Parabacteroides sp. D13]
 gi|298266560|gb|EFI08218.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides
           sp. 3_1_19]
          Length = 367

 Score = 53.1 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 81/268 (30%), Gaps = 42/268 (15%)

Query: 10  KIDLTALKN-------NWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +ID  AL         N      + G+  R    VK N       +++  L +AG++ F 
Sbjct: 12  RIDSPALAFYPDRISGNIELAKRIIGDTNRLRPHVKTN----KAAEVSRMLLDAGIRKFK 67

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI---------PVISSVPQLTFY 112
             ++ E   L      A   VL    P   KI    +LI          ++         
Sbjct: 68  CATIAEAEML--GHMNAP-DVLLAYQPVGPKISRLLDLIKAYPATHYSCLVDQAENARAI 124

Query: 113 SKLMSCG-VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACA- 167
           S L   G ++    + ++ G NR G+  + A          K  Q+  +     H+  A 
Sbjct: 125 SALCEAGNITLDVFIDLNVGMNRTGVLPERAEALVDAILPLKSLQIIGLHGYDGHIHDAE 184

Query: 168 ----DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL---- 219
                  +    ++    FR +   +      +    G    P Y  +            
Sbjct: 185 LSVRCQGADAAYALTERVFREISRKFAYPLVKVM--GGTPTFPMYAKRKDCECSPGTFVF 242

Query: 220 --YGGTDKINKSHPMQTVVTAEARIILI 245
             +G  +      P +       R+I +
Sbjct: 243 WDWGYGNAY-PDMPFKVAALLITRVISV 269


>gi|148360017|ref|YP_001251224.1| metal-activated pyridoxal enzyme [Legionella pneumophila str.
           Corby]
 gi|296108162|ref|YP_003619863.1| metal-activated pyridoxal enzyme [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281790|gb|ABQ55878.1| metal-activated pyridoxal enzyme [Legionella pneumophila str.
           Corby]
 gi|295650064|gb|ADG25911.1| metal-activated pyridoxal enzyme [Legionella pneumophila 2300/99
           Alcoy]
          Length = 397

 Score = 52.7 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 24/166 (14%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L ID   LK+N   M             + +T            C +IA      G    
Sbjct: 39  LVIDYEKLKHNLEIMQQHGFTWGIGIRPHCKT----------HKCTQIARLQLEYGAIGI 88

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKL 115
               + E   L        +     +   +   +F+      +L+ V+     +   +KL
Sbjct: 89  SAAKLSEAAALVSKRITNVLITSLIVSEAKYSRLFNCLKSAPDLMLVVDDKDNIRMLNKL 148

Query: 116 -MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
             S        L +D+G  R G++ + AL++ H        +L  I
Sbjct: 149 GKSLNQPVHVLLDIDSGIGRTGINPEAALEYGHFINGMNWLKLKGI 194


>gi|295111090|emb|CBL27840.1| Predicted amino acid racemase [Synergistetes bacterium SGP1]
          Length = 371

 Score = 52.7 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 117/360 (32%), Gaps = 65/360 (18%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGN--------ARTAAVVKDNAYGLGC-EKIAPALYNA 55
            + ++++DL  L  N   ++ L            +               E +  AL +A
Sbjct: 2   RYPQIRVDLDKLLENARVLSGLLSAHKLKFHYVTKCFC----------AWEPMVDALADA 51

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSK 114
           G+++F    +E    L+ +   A +  +  I    + +   D +L   ++ +        
Sbjct: 52  GIRNFADARLENIEVLKRWARSAMLLRVPMISEADDVVCLCDVSLNSELAVIE--ALSDA 109

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA----DDP 170
            ++ G +H   L V+ G  R G   ++ +         +  +L+ +  +  C       P
Sbjct: 110 ALTLGRTHEVILMVELGDLREGALPEDVMPMVEQILTMRGVKLAGLGVNFNCYGGVIPTP 169

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGIS--------LYGG 222
           +       L +       Y+    S  +S  +   P         GI+        L G 
Sbjct: 170 AKLKELADLAKEAQNRCGYEFEYVSGGNSGSL---PLVFDDRIPSGINHLRIGEAFLLGH 226

Query: 223 TDKINKSHPMQT--VVTAEARIILIR---KALAGELV----SYGGQKKLTRDSLI-AVAA 272
                 S P     V T    +I  +      +GE           +   R  +  A+ A
Sbjct: 227 ETSYGSSIPGMLHDVFTLRCEVIEKKLKHSVPSGERGLNAFGEPPAEMEDRGMIQRAIIA 286

Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVG 331
           +G  D +P +L+                   G     LG  + D T+FD+T +   + VG
Sbjct: 287 VGGQDTFPFSLTPRME---------------GLRY--LGHYSSDHTIFDVTHAKGDVHVG 329


>gi|73662017|ref|YP_300798.1| amino acid racemase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494532|dbj|BAE17853.1| putative amino acid racemase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 353

 Score = 52.7 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 121/358 (33%), Gaps = 73/358 (20%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK----DNAYGLGCEKIAPALYNAGVQD 59
             ++KI+L+ +K N   ++++    + R  AV+K    DN       +I   L   G+  
Sbjct: 1   MAQVKINLSKIKYNAQVLSSIFNQNHIRFTAVIKCVGGDN-------RIVETLKEIGLTH 53

Query: 60  FFVTSVEEGVKLRLYTPQA------RIFVLYGIHPGQEKIIF---DTNLIPVISSVPQLT 110
           F    +E                     ++      +   +    D ++   I+++ +L 
Sbjct: 54  FADARIE--------NITKSKNEDLSFMMIRTPSRSELNDVVQQTDISIQTEITTIRRLN 105

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD- 169
             ++    G  H   L VD    R G+   + +D+ +         +  +  +  C    
Sbjct: 106 DIAR--EKGTKHKILLMVDWKDGREGILTYDIIDYINEILYMHHVSIVGLAFNFMCFQSV 163

Query: 170 -PSSHVNSVQLERFRTLISHYKGIEASLA---SSSGI---LLGPNYHFQLTRPGISLY-G 221
            P+    ++ + +F   +     ++ S+    +SS I   L          R G +L+ G
Sbjct: 164 IPTEEDVAL-INQFVDSVERETNMKFSIISGGNSSMIPQMLYRDFGRINELRIGETLFRG 222

Query: 222 GTDKINKSHP--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI-AVAAIGYADG 278
                N+S     Q  +T EA I+ I+                T    + A+  IG    
Sbjct: 223 VETTTNQSIASLYQNAITLEAEIVEIK----------PRMNIATGHQYLQAIVDIG---- 268

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
                  LD+       L     I G         T D  M D+ +    +VGD IQ 
Sbjct: 269 ------NLDTAVEDIQPLHHHISIAG--------ATSDHVMLDLLNQDYYQVGDKIQF 312


>gi|10952530|gb|AAG24954.1|AF242414_1 unknown [Paenibacillus alginolyticus]
          Length = 226

 Score = 52.7 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIF----DTNLIPVISSVPQL 109
           AG     V  V E  ++        IF+ Y  + PG+ +          LI  + S+   
Sbjct: 56  AGAVGVTVAKVSEA-EVMAAGGVGSIFIAYPLVTPGKIERAVRLSQQIELIVGMDSLAGA 114

Query: 110 TFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
               +     G +    L++DTG  R G+  + AL+           +L+ I +
Sbjct: 115 QLLEETAARLGATLQVRLEIDTGLRRTGVGFESALEVADEIARLPHLRLTGIYT 168


>gi|254496840|ref|ZP_05109691.1| metal-activated pyridoxal enzyme [Legionella drancourtii LLAP12]
 gi|254353967|gb|EET12651.1| metal-activated pyridoxal enzyme [Legionella drancourtii LLAP12]
          Length = 375

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 102/357 (28%), Gaps = 90/357 (25%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALY---NAGV 57
           L +D   L++N   M             + +T              K +       + G 
Sbjct: 18  LVLDKDILRSNLDVMRQHVITNKINLRPHCKT----------H---KCSKLAQLQIDYGA 64

Query: 58  QDFFVTSVEEGVKL---RL--YTPQARIF-------VLYGIHPGQEKIIFDTNLIPVISS 105
                  + E   L   R+      + I        ++  I      ++       V+ +
Sbjct: 65  IGVCAAKISEAEVLIQNRIPNVLITSPIVTKNKITRLMACIETAPATLV-------VVDN 117

Query: 106 VPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---- 160
              +   +    SC       + VD+G  R G+  + AL+F          +L  I    
Sbjct: 118 EENILALNHAGESCQKMIHVLVDVDSGIGRTGVKPEHALNFAMKISALPWLKLMGIQCYA 177

Query: 161 --ISHLACADD-PSSHVNSVQLERFRTLISHYKGIEASLASSSGI----LLGPNYHFQLT 213
             + H+A  ++     ++++Q+          +G+   + + +G     +          
Sbjct: 178 GNLQHIASFNERRQKSLSTMQMASELVSCFKAQGLNCPILTGTGTGTYDIDIEATGVTEI 237

Query: 214 RPGI--------SLYGGTDKINKSHPMQTVVTAEARIILIR-----KALAGELVSY-GGQ 259
           +PG         +  G  + + +    +  +T    +I           AG    Y    
Sbjct: 238 QPGSYAVMDVEYAAIGAKESMKQFDVFKPAMTLLTTVISTHRAEHVTVDAGTKAIYVDQT 297

Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG---FIKGYMVPILGKI 313
            K                  P  +S    E+    F    G    + G  +P+ G++
Sbjct: 298 YK------------------PRIISHQGLEYDWGGFGDEHGKITAVAGTKLPLCGEV 336


>gi|58040029|ref|YP_191993.1| hypothetical protein GOX1596 [Gluconobacter oxydans 621H]
 gi|58002443|gb|AAW61337.1| Hypothetical protein GOX1596 [Gluconobacter oxydans 621H]
          Length = 231

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 28/231 (12%)

Query: 12  DLTALKNNWHSMNALSGNAR----TAAVVKDNAYGLGCEKI--APALYNAGVQDFFVTSV 65
           +L A+++        +G A       AV K          I    A  NAG   F    V
Sbjct: 13  NLAAIRHRIAQACEKAGRAEADVSLVAVSK-------FHPIESVEAALNAGQHLFGENRV 65

Query: 66  EEGV----KLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSK-LMSCG 119
           +E      +LR   P  R+ ++ G+   +        ++I  +          K     G
Sbjct: 66  QEAASKFPELRQRWPDLRLHIIGGLQTNKAAEACQIADMIESLDRPSLSDSIEKGAQKAG 125

Query: 120 VSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                 +QV+TG      G+  +EA  F   S  +   ++  ++      +DP+ H    
Sbjct: 126 RLPELLVQVNTGDEPQKSGVPREEADAFIEASLERFGPKIRGLMCIPPEGEDPTPHF--- 182

Query: 178 QLERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
              R    + H  G+   S+  S+        +  L R G +++G      
Sbjct: 183 ---RLLRQMGHRHGLPVLSMGMSADFEKAIAENATLVRVGTAIFGSRPAPQ 230


>gi|209885817|ref|YP_002289674.1| metal-activated pyridoxal enzyme [Oligotropha carboxidovorans OM5]
 gi|209874013|gb|ACI93809.1| metal-activated pyridoxal enzyme [Oligotropha carboxidovorans OM5]
          Length = 366

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 27/181 (14%)

Query: 9   LKIDLTALKNNWHSMN---------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           L +DL A++ N  ++            + +A      K       C +IA     AG   
Sbjct: 21  LIVDLDAMQANIKALATRVSAFPSVRATPHA------KA----HKCLEIARLQMAAGASR 70

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ-----EKIIFDTNLIPVISSVPQLTFYSK 114
               +V E   L        I +   I          +      +   +    Q+   +K
Sbjct: 71  ICCQNVAEVETLATGGIT-NILLSNEIIGADKARRLAEAARTAKVAVCVDHADQVAVLAK 129

Query: 115 LM-SCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                GV+    +++D G  R G+ S + A+         K  + + + ++   A     
Sbjct: 130 AADEAGVTLDILVEIDVGMGRCGVPSTESAVALAREVAKHKGLRFTGLQAYHGTAQHLRK 189

Query: 173 H 173
            
Sbjct: 190 P 190


>gi|90409431|ref|ZP_01217499.1| hypothetical protein PCNPT3_06863 [Psychromonas sp. CNPT3]
 gi|90309464|gb|EAS37681.1| hypothetical protein PCNPT3_06863 [Psychromonas sp. CNPT3]
          Length = 354

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 117/373 (31%), Gaps = 81/373 (21%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MH +  +   IDL  +K+N     +L    +     K      G           G+   
Sbjct: 1   MHKSPCI--NIDLGIIKSNTQ---SLIKECK-----K-----HGVIPC-------GIAKL 38

Query: 61  FVTS--VEEGVKLRLYTP----QARI-------------FVLYGIHPGQEKIIFDTNLIP 101
                 VE+ +             RI              +L      + + +   + I 
Sbjct: 39  ACAEPKVEQALI--DAGIHLIADPRIVNLKKIKHLNCIKMLLRMPSLSEIEDVITYSDIS 96

Query: 102 VISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSL 159
           + + +  L   S   +     H   +  D G  R G    QE L         K  +L  
Sbjct: 97  LNTEIVTLKALSVAAIKQHKIHKIIIMHDLGDLREGAFYEQETLTLAEQCMQLKGLELVG 156

Query: 160 IISHLACADDPSSHV-NSVQLERFRTLISHYKGIE---ASLASSSGILLG-----PNYHF 210
           + S+LAC         N  QL +    I +   I+    S ASS+ + L      P    
Sbjct: 157 LGSNLACYGGVEPTFENQTQLLQIAKKIENKNAIKLTYISGASSAALPLMLSGKLPKGIN 216

Query: 211 QLTRPGISLYG-GTDKINKSHPMQTVVTAEARIILIR---KAL----AGELVSYGGQKKL 262
           QL      L G G +     +  Q   T  A II I+          A +   +      
Sbjct: 217 QLRLGASLLMGIGLNDDVIPNTQQDAFTLSAEIIEIKIKPSVPLNSTAKDAFGHKPVFVD 276

Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322
             +   A+ A+G  D   +  S L  +    + +GG               + D  + DI
Sbjct: 277 RGNRKRAICALGKQD---IDFSQLFLKDKNIMLIGG---------------SSDHLILDI 318

Query: 323 TD-SLSIEVGDYI 334
           TD   ++++GD +
Sbjct: 319 TDVEPALQIGDSV 331


>gi|313674835|ref|YP_004052831.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
 gi|312941533|gb|ADR20723.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
          Length = 365

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 68/243 (27%), Gaps = 23/243 (9%)

Query: 43  LGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA-----RIFVLYGIHPGQEKIIFDT 97
                +A      G+    V+S+E                  + +L              
Sbjct: 40  HQSIVVANWFRELGITQCAVSSLEMAKYFFNAGWTDITVAFPLNILEHTSVNDLAGKIKL 99

Query: 98  NLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKL 154
           NL   + S+  +   +  +         L++D G++R GL  +   E         +  L
Sbjct: 100 NL--CVESLETVKVLNDFLE--HPVGVFLKIDAGYHRTGLDAENFAEIEAILKALESNHL 155

Query: 155 GQLSLIISHLACAD--------DPSSHVNSVQ-LERFRTLISHYKGIEASLASSS-GILL 204
             +   + H             D      S Q +         Y  +  S   +    + 
Sbjct: 156 ITIKGFLQHAGHTYQAKGKQEIDEIHAYTSKQMINLKEHFNQQYPDLMISNGDTPTCSVS 215

Query: 205 GPNYHFQLTRPG-ISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
               H    RPG    Y        S   + V  A    ++ + A   E++ YGG    +
Sbjct: 216 DDFEHLDEMRPGNFVFYDIMQAEIGSCQYEDVAVAMTCPVVAKHADRNEVIVYGGAVHFS 275

Query: 264 RDS 266
           +D 
Sbjct: 276 KDR 278


>gi|84386391|ref|ZP_00989419.1| Predicted amino acid racemase [Vibrio splendidus 12B01]
 gi|84378815|gb|EAP95670.1| Predicted amino acid racemase [Vibrio splendidus 12B01]
          Length = 378

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 87/261 (33%), Gaps = 27/261 (10%)

Query: 6   FLRLKIDLTALKNNWH-SMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           + RL ID   + +N    ++ LS  N     V K     LG   IA  L +AG      +
Sbjct: 3   YPRLDIDCGKVHHNAQFLISQLSLKNISVTPVTKAF---LGHPIIAQVLIDAGATMLADS 59

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSH 122
            +E   K+          ++      Q   +   + + + S V  +   S         H
Sbjct: 60  RIENLQKMTESGIAIPKMLIRTPMLSQVASVIKYSDMSLNSEVEVIQRLSHAAEQQNCCH 119

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              + V+ G  R G+     +DF     +     +  I ++LAC    +    ++ +   
Sbjct: 120 GIIIMVELGDLREGVMPNRVIDFIREIISLPNITIKGIGTNLACRYGVAPDDQNMSI--- 176

Query: 183 RTLISHYKGIEASL---------ASSS----GILLGPNYHFQLTRPGISLYGGTDKINKS 229
             L     GIEA+           +S+     +           R G +++ G + +   
Sbjct: 177 --LSELADGIEATFGVSLEIISGGNSASVNWALQRTGLTRVNNLRIGEAIFLGCEPLEHE 234

Query: 230 HP---MQTVVTAEARIILIRK 247
           +        V+  A +I  + 
Sbjct: 235 NIKGLHTDAVSLTAEVIESKT 255


>gi|269837824|ref|YP_003320052.1| alanine racemase domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787087|gb|ACZ39230.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 370

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 105/362 (29%), Gaps = 59/362 (16%)

Query: 9   LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L ID  A++ N   M          L  +A+T               IA     AG    
Sbjct: 21  LVIDADAMERNIARMAAFFAERPAKLRPHAKT----------HKSPIIAHKQLEAGAVGI 70

Query: 61  FVTSVEEGVKLRLYTPQARIFV----LYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKL 115
               + E   L     +  I +    +  +   +  ++    NL   +  +      S+ 
Sbjct: 71  TCAKLGEAEALVEGGIK-DILIANQIVGPVKIARLVRLARHANLAVAVDDLDNARQISEA 129

Query: 116 M-SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQ---LSLIISHLACADDP 170
             + G +    ++V+ G NR G+     A++      +        L     HL    D 
Sbjct: 130 AVAAGSTVRVLVEVNVGMNRCGVEPGAPAVELAQRVASLPGLHFFGLQGYEGHLVGVPDR 189

Query: 171 SSHVNSVQ------LERFRTLISHYKGIEASLASSSGILLGPNYH----FQLTRPGISLY 220
           +     V+      +E  R +I    GI   + S  G            F   + G  ++
Sbjct: 190 AERERRVREAMAPLIET-RRMIEAA-GIPVEVVSGGGTGTFDITSTIEGFDEVQAGSYVF 247

Query: 221 G---GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR---DSLIAVAAIG 274
                          +  +   + I+  R A    +   G +    +    +   +  + 
Sbjct: 248 MDAWYRQVEGPDTAFEPALFLWSTIVS-RPAPDRAVGDIGLKTATPKHGLPTAFGIEGV- 305

Query: 275 YADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL-GKITMDMTMFDITDSLSIEVGDY 333
                  TLS  +      V    +    G  +  + G +    T  ++ D   +  G  
Sbjct: 306 ------ETLSLSEEHVKLRVEGEARSLRPGDKIRFVPGHVC---TTVNLHDCYVVVRGGI 356

Query: 334 IQ 335
           ++
Sbjct: 357 VE 358


>gi|239624944|ref|ZP_04667975.1| D-threonine aldolase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521330|gb|EEQ61196.1| D-threonine aldolase [Clostridiales bacterium 1_7_47FAA]
          Length = 374

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 55/195 (28%), Gaps = 19/195 (9%)

Query: 13  LTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71
           L  +K N      L+G        VK         ++      AG+  F   ++ E    
Sbjct: 22  LDIIKENIKKAVDLAGGPGYLWPHVKT----HKMAQMVRLQMEAGITRFKCATIAEAEM- 76

Query: 72  RLYTPQA-RIFVLYGIHPGQEKIIFDTN-------LIPVISSVPQLTFYSKL-MSCGVSH 122
                 A  + V Y +                      V  +  Q+    +L    G+  
Sbjct: 77  -AAGCGAGHVLVAYPLVGPNISRFIQLMQAYPKVCFWTVGDNEDQIRALGQLCSEAGLRA 135

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              + V+ G +R G+ +++   F  +        +  +  H              + E  
Sbjct: 136 NVLVDVNLGMDRTGVPVKDTEAFFMDCALMDGVSMMGL--HCYDGHRTEHDFTQRKKEA- 192

Query: 183 RTLISHYKGIEASLA 197
            T  +  K I + L 
Sbjct: 193 DTSAAQIKTICSHLC 207


>gi|326317869|ref|YP_004235541.1| alanine racemase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374705|gb|ADX46974.1| alanine racemase domain protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 377

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 32/181 (17%)

Query: 11  IDLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ID   ++ N   M              +   +   VV              A   AG Q 
Sbjct: 14  IDTQRMERNIRRMQDRMQAMGVRFRPHAKTTKCLPVV-------------QAQIAAGAQG 60

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----LIPVISSVPQLTFYSK 114
             V++++E  +      Q  I    G+ PG+             L  +  SV       +
Sbjct: 61  ITVSTLKEAEQFFEAGIQ-DILYAVGMVPGKLGQALALRQRGCQLKIITDSVAAAREIGR 119

Query: 115 L-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
              + G      +++DT  +R G+  +E AL    N        +  +++H   + D   
Sbjct: 120 FGAAHGAVFEVWIEIDTDGHRSGIKPEEDALLQVANVLRDAGMVVGGVLAHAGSSYDHDD 179

Query: 173 H 173
            
Sbjct: 180 P 180


>gi|332827252|gb|EGK00022.1| hypothetical protein HMPREF9455_03611 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 367

 Score = 52.0 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 80/221 (36%), Gaps = 22/221 (9%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG--IHPGQEKIIF------D 96
             ++   +  +G+  +   ++ E   L      A   +L    + P  E++I       D
Sbjct: 51  MREVCAIMLKSGITKYKCATIAEAEML--ALVNAPDVLLAYQPVGPKIERLIELIKAYPD 108

Query: 97  TNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155
           T    ++ +       S L     ++    + ++ G +R G+  ++A+D      +    
Sbjct: 109 TRFSCLVDNEENAKAISDLCRENNITLNIFIDLNIGMDRTGIKPEKAIDLVQAIIDLPRI 168

Query: 156 QLSLIISHLACADDPSSHVNSVQLER-FRTLISHYKGIEASLASSSGILLG--PNYHFQL 212
            ++ +  +     D  + +   + +  F      YK I+  L     +++G  P +   +
Sbjct: 169 HIAGLHGYDGHIHDEDTEIRCKKSDISFALAEKAYKEIKPLLPHPIALVMGGTPTFPIHI 228

Query: 213 TR------PGISLY--GGTDKINKSHPMQTVVTAEARIILI 245
            R      PG  ++   G   + +  P +      +R+I I
Sbjct: 229 HRENCECSPGTFVFWDWGYKHMLEDLPFKYAAVVISRVISI 269


>gi|187920497|ref|YP_001889529.1| alanine racemase domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187718935|gb|ACD20158.1| alanine racemase domain protein [Burkholderia phytofirmans PsJN]
          Length = 355

 Score = 52.0 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 50/149 (33%), Gaps = 12/149 (8%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH--PGQEKIIFDT-----N 98
             +  A   AG +   V++++E              +LY +   P +            N
Sbjct: 22  IDVVRAQIAAGARGITVSTLKEAEAFFAAGVDD---ILYAVSMVPSKLPRALALRRQGCN 78

Query: 99  LIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQ 156
           L  V+ +    +  +      G +    ++VDT  +R G++ ++  L       +    +
Sbjct: 79  LKLVVDNPTAASAIAAFGDQHGETFEVWIEVDTDGHRSGITPEQDTLLEVGRILHDNGVE 138

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTL 185
           +  +++H   + +  +      L      
Sbjct: 139 VGGVMTHAGSSYELDTPEALAALAEQERA 167


>gi|170692411|ref|ZP_02883574.1| alanine racemase domain protein [Burkholderia graminis C4D1M]
 gi|170142841|gb|EDT11006.1| alanine racemase domain protein [Burkholderia graminis C4D1M]
          Length = 380

 Score = 52.0 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLI 100
            ++A A   AG +   V++++E            I     I P +   +        +L 
Sbjct: 46  VEVAQAQIAAGARGITVSTLKEAESFFAAGI-VDILYAVSIVPSKLPRVMALRKRGCDLK 104

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLS 158
            V+ +        +   + G S    ++VDT  +R GL  +E AL       +    ++ 
Sbjct: 105 IVVDNASAALAIVEFCKTAGESLEVWIEVDTDGHRSGLKPEEDALLEIGRILHAGAIKVG 164

Query: 159 LIISHLACADDPSSH 173
            +++H   + + ++ 
Sbjct: 165 GVLTHAGSSYELNTP 179


>gi|269129052|ref|YP_003302422.1| Orn/DAP/Arg decarboxylase 2 [Thermomonospora curvata DSM 43183]
 gi|268314010|gb|ACZ00385.1| Orn/DAP/Arg decarboxylase 2 [Thermomonospora curvata DSM 43183]
          Length = 373

 Score = 52.0 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVKDN--AYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           DL AL+ +  ++   L+G        K N  A      +I        V    V S  E 
Sbjct: 19  DLGALREHVAAIRKALTGGPELFYAAKANPDA------EILKT-VAPYVDGIEVASGGEL 71

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             +R   P+AR     G     E++         +  V      S+L   G      L+V
Sbjct: 72  KHVRAVLPKAR-LAFGGPGKTDEELALAVREAERVH-VESPHELSRLARIGRDVDVLLRV 129

Query: 129 DTGFNRLGLSLQ---------EALDFTHNSFN-KKLGQLSLIISHLACADDPS 171
           +    R G++L          EA++  H         +L  I +HLA   +  
Sbjct: 130 NLAGERKGVALAMSGPFGMDPEAIEACHEILAGAPWVRLRGIHAHLASGLEAE 182


>gi|270159139|ref|ZP_06187795.1| putative metal-activated pyridoxal enzyme [Legionella longbeachae
           D-4968]
 gi|289166027|ref|YP_003456165.1| alanine racemase [Legionella longbeachae NSW150]
 gi|269987478|gb|EEZ93733.1| putative metal-activated pyridoxal enzyme [Legionella longbeachae
           D-4968]
 gi|288859200|emb|CBJ13132.1| putative alanine racemase [Legionella longbeachae NSW150]
          Length = 374

 Score = 52.0 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 44/173 (25%), Gaps = 38/173 (21%)

Query: 9   LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPAL---YNAGV 57
           L ID   LK N   M          +  + +T              K +         G 
Sbjct: 18  LVIDKNILKTNLEKMKKHGIENEINIKPHCKT----------H---KCSKLAGLQIEYGA 64

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---------IPVISSVPQ 108
               V  + E   L        I +     P   K      +         + V+ S   
Sbjct: 65  IGVCVAKISEAEVLIKEEI-PNILI---TSPVITKNKISRLIACLEKAPSTMVVVDSKEN 120

Query: 109 LTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
           +   ++            L +D G  R G+  + AL+F           L  +
Sbjct: 121 ILALNEAGARHNKRIHVLLDIDPGIGRTGIKPEHALNFARELQRLPWLHLMGV 173


>gi|187477177|ref|YP_785201.1| pyridoxal phosphate binding aldolase [Bordetella avium 197N]
 gi|115421763|emb|CAJ48274.1| putative pyridoxal phosphate binding aldolase [Bordetella avium
           197N]
          Length = 382

 Score = 51.6 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 13/129 (10%)

Query: 45  CEKIAPALYN--AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT----- 97
             ++A        G     V++++E  +      +  I    G+ P +   +        
Sbjct: 51  SVEVARRAMQTPQGPA--AVSTLQEAEQFARAGVR-DILYAVGLSPAKIDRVLALRAQGV 107

Query: 98  NLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH--NSFNKKL 154
           NL  V+ SV      + +  + G   P  +++D   +R G+  ++         + ++  
Sbjct: 108 NLTVVVDSVEAAQALASRSRAAGAPIPALIEIDADGHRAGVRPEQQALLCAIGRALHEGG 167

Query: 155 GQLSLIISH 163
            +L  +++H
Sbjct: 168 AELRGVMTH 176


>gi|255013342|ref|ZP_05285468.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides
           sp. 2_1_7]
          Length = 367

 Score = 51.6 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 81/268 (30%), Gaps = 42/268 (15%)

Query: 10  KIDLTALKN-------NWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61
           +ID  AL         N      + G+  R    VK N       +++  L +AG++ F 
Sbjct: 12  RIDSPALAFYPDRISGNIELAKRIIGDTNRLRPHVKTN----KAAEVSRMLLDAGIRKFK 67

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI---------PVISSVPQLTFY 112
             ++ E   L      A   VL    P   KI    +LI          ++         
Sbjct: 68  CATIAEAEML--GHMNAP-DVLLAYQPVGPKISRLLDLIKAYPATHYSCLVDQAENARAI 124

Query: 113 SKLMSCG-VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACA- 167
           S L   G ++    + ++ G NR G+  + A          +  ++  +     H+  A 
Sbjct: 125 SALCEAGNITLDVFIDLNVGMNRTGVLPERAEALVDAILPLRSLRIIGLHGYDGHIHDAE 184

Query: 168 ----DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL---- 219
                  +    ++    FR +   +      +    G    P Y  +            
Sbjct: 185 LSVRCQGADAAYALTERVFREISRKFAYPLVKVM--GGTPTFPMYAKRKDCECSPGTFVF 242

Query: 220 --YGGTDKINKSHPMQTVVTAEARIILI 245
             +G  +      P +       R+I +
Sbjct: 243 WDWGYGNAY-PDMPFKVAALLITRVISV 269


>gi|240172617|ref|ZP_04751276.1| putative S-adenosylmethionine decarboxylase [Mycobacterium kansasii
           ATCC 12478]
          Length = 647

 Score = 51.6 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 21/173 (12%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQD 59
           M    +  L IDL  +++N  ++ A    A     VK N       E +   L   G + 
Sbjct: 1   MRETPY--LTIDLARVRDNLQALRAALPEASIRYAVKANPG-----EPVLRLLAGEGAE- 52

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIH--PGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           F V SV E    RL                P      + + +   +    +    + +  
Sbjct: 53  FDVASVGEIDACRLAGIDGSRLAFGNTIKKPAAVGHAYASGVRRFVFDTHEG--LAAIAE 110

Query: 118 CGVSHPYALQVDTGF--------NRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                    ++   F        ++ G +   A      +    L  +++   
Sbjct: 111 HAPGASVECRIAPAFPSSVTPFGHKFGCAPDAAAGLLTRARRLGLRPVAIAFH 163


>gi|146309164|ref|YP_001189629.1| alanine racemase domain-containing protein [Pseudomonas mendocina
           ymp]
 gi|145577365|gb|ABP86897.1| alanine racemase domain protein [Pseudomonas mendocina ymp]
          Length = 230

 Score = 51.6 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 73/247 (29%), Gaps = 52/247 (21%)

Query: 16  LKNNWH----SMNALSGNAR-------TAAVVK---DNAYGLGCEKIAPALYNAGVQDFF 61
           +  N       +   +  ++         AV K    +A            + AG++DF 
Sbjct: 4   IAENIAKVGARIREAAQASQRNFADIGLLAVSKTKPADA--------IREAHAAGLRDFG 55

Query: 62  VTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              ++E ++ +         +      I   + + I +      + SV +L    +L   
Sbjct: 56  ENYLQEALEKQAALSDLP-LIWHFIGPIQSNKTRPIAEHFDW--VHSVDRLKIAQRLSDQ 112

Query: 119 GVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
             +H   L +    N      + G S +E  +           +L  ++       +P+ 
Sbjct: 113 RPAHLAPLNICLQVNVSGEDSKSGCSPEELPELAQAIAALPNLKLRGLM----AIPEPTD 168

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQLTRPGISLYGGT 223
            + + Q   F  L      +   L      L     H             R G +L+G  
Sbjct: 169 DI-AAQHAAFARLRQLRDDLGLQLD----TLSMGMSHDLEAAIAEGATWVRIGTALFGAR 223

Query: 224 DKINKSH 230
           D    SH
Sbjct: 224 DYGQPSH 230


>gi|284041650|ref|YP_003391990.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
 gi|283945871|gb|ADB48615.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
          Length = 372

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 35/178 (19%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +D   L+ N  +M AL+         +A+T              ++A    +AG    
Sbjct: 11  LVVDRDVLRANVEAMAALARDAGVALRPHAKT----------HKLPQVARMQLDAGAAGL 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI------------PVISSVPQ 108
            V  + E              ++     G+ K+     L               + +V  
Sbjct: 61  TVAKLGEAEVFADAGVTD--LLIAYPLVGELKLARLVALARRLASEPGGCIAVAVDAVET 118

Query: 109 LTFYS-KLMSCGVSHPYALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISH 163
            T  S  + + GV     ++VDTG +RLGL    A   +           +   +++H
Sbjct: 119 ATGISDAVAAAGVEVGVRVEVDTGMHRLGLEPASAALVELARAVAALPGLRFEGVMTH 176


>gi|54309885|ref|YP_130905.1| hypothetical protein PBPRA2731 [Photobacterium profundum SS9]
 gi|46914324|emb|CAG21103.1| hypothetical protein PBPRA2731 [Photobacterium profundum SS9]
          Length = 355

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 17/180 (9%)

Query: 5   EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGL-----GCEKIAPALYNAGVQD 59
           ++  L I+L  ++NN   +  L  N     V      G+     G E I  A+   G+Q 
Sbjct: 2   QYPSLSINLRIIENNTRELVQLCCNKGIIPV------GITKLVEGSEPIVRAMIFGGIQT 55

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMS 117
              T ++  +KL+    +  +     +    E +++  ++   + S   +        + 
Sbjct: 56  IGDTQIQNLMKLKDLPIRKMLLR-RPLLSEVEGVVYHADI--SLHSERSVLEALSQAAVK 112

Query: 118 CGVSHPYALQVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
               H   +  D G  +       +  +               I SHL C  +  S  +S
Sbjct: 113 ANKRHEVIIMHDLGELHEKTFDDSKTEELAELVLMLPGLTFVGIGSHLKCYHEVESTTDS 172


>gi|262201693|ref|YP_003272901.1| alanine racemase domain-containing protein [Gordonia bronchialis
           DSM 43247]
 gi|262085040|gb|ACY21008.1| alanine racemase domain protein [Gordonia bronchialis DSM 43247]
          Length = 360

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 37/208 (17%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +D   L+ N   +   +         +A+T            C +IA      G    
Sbjct: 10  LVVDDERLEANLARVADRARDAGVLVRPHAKT----------HKCVEIARRQIAHGAAGL 59

Query: 61  FVTSVEEGV------KLRLYTPQARIFVLYGIHPGQEKIIFDT----NLIPVISSVPQLT 110
            V +V E        ++R       +     + P     +       +L   I S     
Sbjct: 60  TVATVGEAEVFAAVDEVREIFIAYPL----WVTPAMAGRLISIARIVSLRVGIDSAEGAR 115

Query: 111 FYS----KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
             +    +    G      +++D+G +R G S + A +    + +  L  +  + +    
Sbjct: 116 HLADSLHEAGDGGAPLEVVVEIDSGQHRTGTSPRVAGEVARAAVDAGL-DVVGVFTFPGH 174

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIEA 194
           +  P         +    L    +G+ A
Sbjct: 175 SYGPGDTRARAADQEITALAEAAQGLRA 202


>gi|268590616|ref|ZP_06124837.1| putative amino acid processing protein [Providencia rettgeri DSM
           1131]
 gi|291314008|gb|EFE54461.1| putative amino acid processing protein [Providencia rettgeri DSM
           1131]
          Length = 355

 Score = 51.2 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 43  LGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ-----EKIIFDT 97
               ++A      G +     +++E   +        I + Y +   Q      ++    
Sbjct: 39  HKSVELAKFEIACGAKGITCATLQEATVMAKGGIDH-ILLAYPMIGEQKCQQFIELAKKI 97

Query: 98  NLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ 156
            L  +I S+      S             + VD G +R G+ L +   F          +
Sbjct: 98  KLRTIIDSLQGAEQLSAAAKQENQIIEVYIAVDYGAHREGIQLDDLEPFALAIQKLPNLK 157

Query: 157 LSLIIS 162
           +  + +
Sbjct: 158 IIGVFT 163


>gi|264680409|ref|YP_003280319.1| alanine racemase [Comamonas testosteroni CNB-2]
 gi|262210925|gb|ACY35023.1| alanine racemase-like protein [Comamonas testosteroni CNB-2]
          Length = 394

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 40/190 (21%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L IDL A+  N   M   +         +A+                IA  L +AG    
Sbjct: 24  LVIDLDAMDRNIERMARFAQQHGVLWRPHAKL----------HKSAHIAHLLEHAGACGH 73

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHP----GQEKIIFDT------NLIPVISSVPQLT 110
            V  V E   L        IF+   +       +   +          L   +     +T
Sbjct: 74  CVQKVSEAEALAQGGIT-NIFISNEVISQTKLARVATLARALNAQGGRLALAVDCEEGIT 132

Query: 111 FYSKLMSCGVSH----PYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLI----- 160
             ++ +    +        ++++ G NR G    E AL        + + + + +     
Sbjct: 133 RLARALQDAQAGDAAMDVLVEINVGQNRCGAEPGEAALVLAQAIAAQPVLRFAGLQAYHG 192

Query: 161 -ISHLACADD 169
              HL  A++
Sbjct: 193 GAQHLRSAEE 202


>gi|299533035|ref|ZP_07046422.1| alanine racemase-like protein [Comamonas testosteroni S44]
 gi|298719259|gb|EFI60229.1| alanine racemase-like protein [Comamonas testosteroni S44]
          Length = 394

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 40/190 (21%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L IDL A+  N   M   +         +A+                IA  L +AG    
Sbjct: 24  LVIDLDAMDRNIERMARFAQQHGVLWRPHAKL----------HKSAHIAHLLEHAGACGH 73

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT----------NLIPVISSVPQLT 110
            V  V E   L        IF+   +    + +               L   +     +T
Sbjct: 74  CVQKVSEAEALAQGGIT-NIFISNEVISQTKLVRVAALAKALNAQGGRLALAVDCEEGIT 132

Query: 111 FYSKLMSCGVSH----PYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLI----- 160
             ++ +    +        ++++ G NR G    E AL        + + + + +     
Sbjct: 133 RLARALQDAQAGDAAMDVLVEINVGQNRCGAEPGEAALVLAQAIAAQPVLRFAGLQAYHG 192

Query: 161 -ISHLACADD 169
              HL  A++
Sbjct: 193 GAQHLRSAEE 202


>gi|156740573|ref|YP_001430702.1| alanine racemase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156231901|gb|ABU56684.1| alanine racemase domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 349

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 77/278 (27%), Gaps = 43/278 (15%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCE-----------KIAPALYNAGV 57
           + IDL  L+ N     A                  G             +IA     AG 
Sbjct: 11  VVIDLDRLEANIARFQAHLDR-------------HGIANRPHIKTHKIPQIAQMQIAAGA 57

Query: 58  QDFFVTS--VEEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFY- 112
               +T   + E   +        IF+ Y I      E+++     + V  +        
Sbjct: 58  --VGITCQKLGEAEVMADAGIT-DIFLPYNILGAAKLERLVALARRVQVSVTADSPDVVT 114

Query: 113 ---SKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
              + +   G+  P  ++ DTG  R G+ +  EA +           +   ++++ +   
Sbjct: 115 GLGAAMSGAGLELPVLVECDTGMGRCGVQTPAEAAELAFQIARTAGLRFGGLMTYPSSPA 174

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYG--GTDK 225
                     +   R           S   ++G+     +      R G+ +YG   T +
Sbjct: 175 I--GPFMREAVRLLRE--RGLPVERVSGGGTAGMWHAHEHPEVTEYRAGMYVYGDRYTLR 230

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
                  +  ++    ++       G +          
Sbjct: 231 AGALRLEECAMSVLTTVVSRPTPDRGVIDGGSKTFSSD 268


>gi|304399031|ref|ZP_07380900.1| alanine racemase domain protein [Pantoea sp. aB]
 gi|304353491|gb|EFM17869.1| alanine racemase domain protein [Pantoea sp. aB]
          Length = 380

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 90/277 (32%), Gaps = 38/277 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +++D   L+ N   M      AR A V     +K          IA     +G Q   V+
Sbjct: 22  IEVDAARLECNLQHMQR---KARAAGVALRPHIKT----HKSVWIARRQIESGAQGITVS 74

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF------DTNLIPVISSVPQLTFYSKL-- 115
              EG+       +  +     +HP     +          L  +  S+  +   ++   
Sbjct: 75  KPSEGISFIQGGIRDLLLAYPVVHPQSVAELLRLAVLHQVRLTLIADSLQGVAAIAEACQ 134

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
              G     A++VD G +R+G++   +       +   K  + + ++SH   A       
Sbjct: 135 HQPGCELAVAIKVDVGLHRIGVNPDTDDAVLIAQALQDKGLRFAGLVSHAGHAYGAGHAA 194

Query: 175 NSVQLERFRTLI----------SHYKGIEASLASSSGILLGPNYHF-QLTRPG--ISLYG 221
              ++ R  T +          + +     S+ S+   L           RPG    L  
Sbjct: 195 AIAEVARQETALMQRVQAKLQAAGFTDCPLSVGSTPTALAAEIAPCINEIRPGNYALLDL 254

Query: 222 GTDKINKSHPMQTVVTAEARIILIRK----ALAGELV 254
              ++  SH  Q  ++   R++ +        AG  +
Sbjct: 255 TACRLGLSHVDQLAMSVITRVVAVNDHFAIVDAGSKM 291


>gi|237744998|ref|ZP_04575479.1| serine racemase [Fusobacterium sp. 7_1]
 gi|260494775|ref|ZP_05814905.1| serine racemase [Fusobacterium sp. 3_1_33]
 gi|229432227|gb|EEO42439.1| serine racemase [Fusobacterium sp. 7_1]
 gi|260197937|gb|EEW95454.1| serine racemase [Fusobacterium sp. 3_1_33]
          Length = 369

 Score = 50.4 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 17/178 (9%)

Query: 12  DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           ++ ALKNN      L          ++K         +I       G       +++E  
Sbjct: 14  NIEALKNNIKKYQNLCTEYKKELWPMIKT----HKSMEIVEMQIKEGATGVLCGTLDEAE 69

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNL----IPVISSVPQLTFYSKLMSCGVS---- 121
                  +    ++Y      E+ I            I  +  L    K+     +    
Sbjct: 70  ACCQKDVKK---IMYAYPVASEENIKRIIEMSKKTEFIIRLDSLEAAIKINKIAETENII 126

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             Y + +D+G +R G+SL+  L F       K  +L  I SH       +   +  Q 
Sbjct: 127 INYTIIIDSGLHRFGVSLKNLLTFAEELKKLKYLKLRGISSHPGHVYSSTCEADIHQY 184


>gi|260772717|ref|ZP_05881633.1| predicted amino acid racemase [Vibrio metschnikovii CIP 69.14]
 gi|260611856|gb|EEX37059.1| predicted amino acid racemase [Vibrio metschnikovii CIP 69.14]
          Length = 356

 Score = 50.4 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 14/168 (8%)

Query: 6   FLRLKIDLTALKNNWHSM------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           + RL+I+ T + +N   +       A+S       V K ++ G     +A    NAG   
Sbjct: 3   YPRLEINCTKIIHNTQYLMAELHLKAIS----VTPVTKASS-GH--PLLAQLFINAGATM 55

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
              + VE   ++R       + ++      Q   +     I + + +  +   S +    
Sbjct: 56  LADSRVENMQRMRCSGISIPLMLIRTPMLSQIAGVISDCSISLNTEIEVIQALSDEAQRT 115

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
              H   + V+ G  R G+  ++ +DF           +  I ++LAC
Sbjct: 116 NSDHSVIIMVELGDLREGVMAKDLVDFIRRIVLLPNIIIKGIGANLAC 163


>gi|255530336|ref|YP_003090708.1| alanine racemase domain-containing protein [Pedobacter heparinus
           DSM 2366]
 gi|255343320|gb|ACU02646.1| alanine racemase domain protein [Pedobacter heparinus DSM 2366]
          Length = 375

 Score = 50.4 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 13/162 (8%)

Query: 9   LKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L + L  +K N  H+++ ++  AR    VK        ++++  L +AGV  F   ++ E
Sbjct: 24  LVVYLDRVKTNIQHAIDIIADPARLRPHVKT----HKTKEVSRLLMDAGVNKFKCATIAE 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIF------DTNLIPVISSVPQLTFYSKLMSC-GV 120
              L +   +  +       P   ++I       DT    +I ++      S L S   +
Sbjct: 80  AEMLGMLAAKDVLLAYQPFGPKLARLISLIRKYPDTRFSCLIDNLETAKNISALASSEQL 139

Query: 121 SHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLII 161
             P  + ++ G NR G+     A+    ++      QL  + 
Sbjct: 140 ELPVYIDLNVGMNRTGIQPDHCAIQLFEDAVKLNGIQLLGLH 181


>gi|294102773|ref|YP_003554631.1| alanine racemase domain protein [Aminobacterium colombiense DSM
           12261]
 gi|293617753|gb|ADE57907.1| alanine racemase domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 377

 Score = 50.0 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 52/172 (30%), Gaps = 30/172 (17%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEK---------IAPALYNAGVQD 59
           L +DL  ++ N   M   +  A           G+             IA     AG + 
Sbjct: 22  LLVDLDVMERNISWMQQKAQRA-----------GVNLRPHIKTHRTPDIAKKQLAAGAKG 70

Query: 60  FFVTSVEEGVKLRLYTPQARIFV---LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
             V  + EG  +        IF+   L G       +         +  V        L 
Sbjct: 71  ITVAKLGEGEVMAAEGID-DIFIANELAGDIKMDRLLALARKTTLAVG-VDHPDHVKMLA 128

Query: 117 SC----GVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISH 163
                        + VDTG++R G+ S +E L+       +   +L  I +H
Sbjct: 129 ETFDGESRPMEIMIDVDTGYHRTGVGSKEEILELAKLIRYRDSLKLRGIFTH 180


>gi|254472752|ref|ZP_05086151.1| alanine racemase domain protein [Pseudovibrio sp. JE062]
 gi|211958216|gb|EEA93417.1| alanine racemase domain protein [Pseudovibrio sp. JE062]
          Length = 383

 Score = 50.0 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 49/172 (28%), Gaps = 30/172 (17%)

Query: 9   LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +DL A  +N   M             + +               +IA      G    
Sbjct: 30  LIVDLDAFDHNLFKMRDEIARYGVRHRAHCKM----------HKSAEIAKLQMEQG-HAC 78

Query: 61  FVTS--VEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFD-----TNLIPVISSVPQLTFY 112
            V    V E   L        I V      P +   +         ++    ++P +   
Sbjct: 79  GVCCQKVSEAEALARAGIT-DIMVSNEVCDPYKIDRLAQLPKLGARILVCTDNLPNIAAL 137

Query: 113 SKLM-SCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIIS 162
           S+     G      +++D G +R G++   A L+      N      + I S
Sbjct: 138 SEAAVKHGTELEVLVELDCGGSRCGVADSAAVLELATEIINAPNLHFAGIQS 189


>gi|289523186|ref|ZP_06440040.1| amino acid racemase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503729|gb|EFD24893.1| amino acid racemase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 368

 Score = 50.0 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 10/161 (6%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGL-GCEKIAPALYNAGV 57
           M SN   +L+I L  +++N   +  L      R   V K    GL G  K+A A+ + G 
Sbjct: 9   MGSNP--KLRIGLEKIRDNASKVVELCKKTGIRAGGVTK----GLCGNLKVAEAMVDGGC 62

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
                + V+    L+         +L    P +   +     + ++S    +    +   
Sbjct: 63  SFLADSRVKNIANLKREGMNVPCMLLRLPMPSETDAVVTWADVSLVSMGETILLLDEACK 122

Query: 118 CGVS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL 157
                H   + VD G  R G+   +    T  S  KK  ++
Sbjct: 123 IKNKFHEVVVMVDVGDLREGIWPSDVEIETIASALKKCKRV 163


>gi|326318901|ref|YP_004236573.1| alanine racemase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375737|gb|ADX48006.1| alanine racemase domain protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 393

 Score = 50.0 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 81/278 (29%), Gaps = 50/278 (17%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
             +DL A++ N   M   +         +A+             C ++A  L  AG    
Sbjct: 27  AVVDLDAMERNIQRMADFARKHQVRWRPHAKM----------HKCAELALRLQQAGAGGA 76

Query: 61  FVTSVEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDT---------NLIPVISSVPQLT 110
            V  V E   L        I++    I P + + +             L   + S   + 
Sbjct: 77  CVQKVSEAEALAAGGVT-DIYISNEVIAPAKLQRVARLARQLAGLGGRLAIAVDSPEGIA 135

Query: 111 FYSKLMSC----GVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIIS--- 162
             ++ M      G      +++D G  R G+   EA              + + + +   
Sbjct: 136 RLAEAMDAAGPDGAGIDVFVEIDVGQGRCGVPPGEAAVPLAQAVAGHARLRFAGLHAYHG 195

Query: 163 ---HLACADD-PSSHVNSVQLERFRTLISHYKGIEASLASSS--GILLGPNYHFQLTRPG 216
              HL  A +   +   +V+  R         G+   L + +  G L+            
Sbjct: 196 RAQHLRGAAERRDAIATAVEAARTTRDAIQAAGLPVPLVTGAGTGTLVHEAASGVYGELQ 255

Query: 217 ISLYGGTD---KINKSHPMQTVVT----AEARIILIRK 247
              +   D     N+  P Q         + ++I  R 
Sbjct: 256 AGSFLFMDADYAANEREPAQPAFEHALFIKTQVISSRD 293


>gi|229494232|ref|ZP_04387995.1| D-amino acid deaminase [Rhodococcus erythropolis SK121]
 gi|229318594|gb|EEN84452.1| D-amino acid deaminase [Rhodococcus erythropolis SK121]
          Length = 436

 Score = 50.0 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 9   LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPAL----YNAG 56
           + ++  A+ +N   M          L+ +A+T               ++P L     +AG
Sbjct: 58  MTLNRAAIAHNVALMAQFCSDHDVDLAPHAKT--------------TMSPELVRRQLDAG 103

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-------LIPVISSVPQL 109
                  +V +   LR +     I     + P   + I D         +  ++ SV  +
Sbjct: 104 AWAMTAATVAQARILREFGVDTIIIASQVLDPAGIRWICDAQATDPDFFVTTLVDSVESV 163

Query: 110 TFYSKLMSC-GVSHPYALQVDTGF--NRLGL-SLQEALDFTHNSFNKKLGQLSLI 160
               +L++    +    + V+ G+   R G  ++++ALD    +       L+ +
Sbjct: 164 RLMEQLIAKVSPASRIRVLVELGYDSGRAGARTVEQALDVARAASQAPSLILTGV 218


>gi|226304478|ref|YP_002764436.1| hypothetical protein RER_09890 [Rhodococcus erythropolis PR4]
 gi|226183593|dbj|BAH31697.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 436

 Score = 50.0 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 9   LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPAL----YNAG 56
           + +D  A+ +N   M          L+ +A+T               ++P L     +AG
Sbjct: 58  MTLDRAAIAHNVDLMAQFCSDHDVDLAPHAKT--------------TMSPELVRRQLDAG 103

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-------LIPVISSVPQL 109
                  +V +   LR +     I     + P   + I D         +  ++ SV  +
Sbjct: 104 AWAMTAATVAQARILREFGVDTIIIASQVLDPAGIRWICDAQATDRDFFVTTLVDSVESV 163

Query: 110 TFYSKLMSC-GVSHPYALQVDTGF--NRLGL-SLQEALDFTHNSFNKKLGQLSLI 160
               +L++    +    + V+ G+   R G  ++++ALD    +       L+ +
Sbjct: 164 RLMEQLIAKVSPASRIRVLVELGYDSGRAGARTVEQALDVARAASQAPSLILTGV 218


>gi|118444569|ref|YP_878187.1| amino acid racemase [Clostridium novyi NT]
 gi|118135025|gb|ABK62069.1| amino acid racemase [Clostridium novyi NT]
          Length = 368

 Score = 50.0 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 62/170 (36%), Gaps = 15/170 (8%)

Query: 5   EFLRLKIDLTALKNN----WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            + RL+I+++ LK+N      ++  +        V K      G  + A A+ + G++  
Sbjct: 2   SYPRLEINISKLKHNAKVEVETLKKI--GVEVMGVNKVF---NGSVETAKAIVDGGIKVV 56

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119
             + ++   K++    +    +L      +   +     I + S +  +   SK      
Sbjct: 57  AESRIDNLKKIQNLKCEKA--LLRSPALSEIGDVVKYADISLNSEIEIIRELSKEAVIQN 114

Query: 120 VSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLAC 166
             H   L +D G  R G+  +   E  +  +        ++  + ++  C
Sbjct: 115 KIHKVLLMIDFGDIREGIWFENKGEIEEVLNKVKLLPNIEIYGLGTNFNC 164


>gi|312888040|ref|ZP_07747624.1| alanine racemase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311299521|gb|EFQ76606.1| alanine racemase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 367

 Score = 50.0 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 100/356 (28%), Gaps = 75/356 (21%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R+K ++  L ++  ++N L  + +T              +       AG+  F   ++ E
Sbjct: 24  RVKYNIGLLVSSIDNVNRLRPHVKT----------HKSSQAVELCLEAGISKFKCATIAE 73

Query: 68  GVKLRLYTPQARIFVLYG--IHPGQEKIIF---DTNLIPVISSVPQLTFYSK----LMSC 118
              L      A   +L    + P  ++ I          +   V   T   +     ++ 
Sbjct: 74  AEML--ALCNAPDVLLAYQPVGPKIDRFIALIKHYTATQLACLVDDYTVAERMNELALAN 131

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
            ++    + ++ G NR G+ LQ AL            Q+  +  H          +    
Sbjct: 132 QLTIQVYIDLNVGMNRSGIVLQHALALYQRCAALPAIQVKGL--HAYDGHIHDEDL---- 185

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVT 237
                        I A   +++                +   G     +    P   V  
Sbjct: 186 ------------AIRAERVNTA------FAPVDSLVVQLRSLGFEPVVVAGGTPTFPVHA 227

Query: 238 AEARIILIRKALAGEL----VSYGGQKKLTRDSLIAVAAIGYADGYPLTLS--------- 284
           A++ I    +   G        Y            A+            +S         
Sbjct: 228 AKSDI----ECSPGTFIYWDGGYQQAFTEQAFLTAALV-------ITRVVSLPDETKICV 276

Query: 285 --GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338
             G  S  S +V      F+    +  +G  + +  + D   +   ++GD   ++G
Sbjct: 277 DLGHKSIASENVLDKRVTFLNTPELKFVGH-SEEHLVLDAGPNHQYQIGD--VLYG 329


>gi|229002622|ref|ZP_04160659.1| Alanine racemase domain protein [Bacillus mycoides Rock3-17]
 gi|229008034|ref|ZP_04165588.1| Alanine racemase domain protein [Bacillus mycoides Rock1-4]
 gi|228753216|gb|EEM02700.1| Alanine racemase domain protein [Bacillus mycoides Rock1-4]
 gi|228758502|gb|EEM07643.1| Alanine racemase domain protein [Bacillus mycoides Rock3-17]
          Length = 361

 Score = 49.7 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 122/361 (33%), Gaps = 63/361 (17%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAV---VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +KI+L+ LK+N   +  L  +A      V   V          ++   L  AG   F  +
Sbjct: 1   MKINLSKLKHNAIMIKRLCEHANVSCFPVTKGVSA------ATEVIEILKEAGFTKFADS 54

Query: 64  SVEEGVKLRLY-TPQARIFVLY--GIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCG 119
            ++   K+R        + ++    +   +E ++  D +L   +  +            G
Sbjct: 55  RLQHLHKIRKMMGNSVELLLIRTPALSEVEETVLTADISLNSELCVIE--ALGRAATKYG 112

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVN- 175
             H   L +D G  R G+  Q+ ++ +      +  +L  I    +  +      S +  
Sbjct: 113 KIHRVILMIDLGDLREGMLPQQMVEVSQRVVGIQGIELVGIGANFTCFSGVIPTESSLLE 172

Query: 176 --------SVQLERFRTLISHYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKI 226
                     ++ +  ++IS        L     IL           R G +++ G +  
Sbjct: 173 LTQLTELVEEKIGQPLSIISGGNSSSLPL-----ILQRKEIGRVNSLRIGEAIFLGKETA 227

Query: 227 ---NKSHPMQTVVTAEARIILIRKALAGELVSYGGQ-------KKLTRDSLIAVAAIGYA 276
              N     Q +   EA II +++  +      G          +   + L A+ AIG  
Sbjct: 228 YGKNIPFMYQDIFLVEAEIIEVKRKPSMPRGVIGKNAFGQVPCFEEKGERLRAIVAIGRQ 287

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336
           D   L +SGL         LGG               + D  + DITDS +  VGD I  
Sbjct: 288 D---LDISGLYPLDGHIEILGG---------------SSDHLIVDITDSKTYRVGDIITF 329

Query: 337 F 337
            
Sbjct: 330 L 330


>gi|302893735|ref|XP_003045748.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726675|gb|EEU40035.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 343

 Score = 49.7 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARIF----VLYGIHPGQEKIIFDTN--LIPV 102
           A  L  AG +   V  V E   +        I     ++  +   +   +F  +  +  V
Sbjct: 32  ARKLVAAGAKGCCVAKVSEAEAITAAGFD-DILITCEIIGPVKVKRLVELFRKHKTIRIV 90

Query: 103 ISS-VPQLTFYSKLMSCGVSHPYALQVDT--GFNRLGLSL-QEALDFTHNSFNKKLGQLS 158
           + S V        L   G++ P ++ VD   G  R G++  Q A+    +  + K  +L 
Sbjct: 91  VDSEVGASAINDALEKSGITEPISVLVDLDVGLRRTGVAAGQPAVALAKHISSLKHLRLI 150

Query: 159 LI------ISHLACADDPSS 172
            I      + HL   +D   
Sbjct: 151 GIQGYEGHLQHLHSREDRKK 170


>gi|255994841|ref|ZP_05427976.1| putative cytoplasmic protein [Eubacterium saphenum ATCC 49989]
 gi|255993554|gb|EEU03643.1| putative cytoplasmic protein [Eubacterium saphenum ATCC 49989]
          Length = 359

 Score = 49.7 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 106/365 (29%), Gaps = 67/365 (18%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSGNARTA-AVV-KDNAYGLG----------CEKIAPA 51
           N + RL I+  A+++N   +  L  +     +VV K      G            KI P 
Sbjct: 2   NRYPRLVINAEAIEHNTRLVQQLCRDNGIMLSVVTK------GFSSMPKLVSSISKINPI 55

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQARI-FVLYGIHPGQEKIIFDTNLIPVISSVPQLT 110
             ++ ++           ++R       I  +   +    E +I + N+   +       
Sbjct: 56  FSDSRIETI--------KQMREAGINGHITLIRSPMMSEAEDVINNCNMSFHVDKAVLKH 107

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFN-KKLGQLSLIISHLACAD 168
           F          H   L  D G  R G    +E ++      N      L+ + +  AC  
Sbjct: 108 FDEVAGRLSKKHDVLLMCDVGDLREGPFYDEEVIELAEYIENDLSNLYLAGLGTEFACYG 167

Query: 169 DPSSH------VNSVQLERFRTLISHYKGIEASLASSSGILLGPNY--HFQLTRPGISL- 219
                      ++         +    K I     SS  +++           R G  + 
Sbjct: 168 SIRPTPKNLGVLSDRATAIEEKIGRKLKYISGGGTSSLALVVQGKMPEKINHLRVGEGIN 227

Query: 220 ----YGGTDKINKSHPMQTVVTAEARIILIR---KALAGEL----VSYGGQKKLTRDSLI 268
                G             V T EA +   R       GE          +     D   
Sbjct: 228 IGREMGEIWNAPLEGIRHDVFTLEAEVTETRKKPTYPIGEFAVDAFGQEPEYVDRGDRTR 287

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LS 327
           A+ A+G  D +          H     + G  F+ G         + D+T+ DI D    
Sbjct: 288 AIVALGKKDVF--------DPHQLIPTVEGIDFLGG---------SSDITIIDIEDCKEE 330

Query: 328 IEVGD 332
           I+ GD
Sbjct: 331 IKAGD 335


>gi|221064978|ref|ZP_03541083.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
 gi|220710001|gb|EED65369.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
          Length = 394

 Score = 49.7 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 34/175 (19%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L IDL A+  N   M   +         +A+                IA  L +AG    
Sbjct: 24  LVIDLDAMDRNIERMARFAQQHGVLWRPHAKL----------HKSAHIAHLLEHAGACGH 73

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHP----GQEKIIFDT------NLIPVISSVPQLT 110
            V  V E   L        IF+   +       +   +          L   +     +T
Sbjct: 74  CVQKVSEAEALAQGGIT-NIFISNEVIAQTKLARVAALAKALNAQGGRLALAVDCEEGVT 132

Query: 111 FYSKLMSCGVSH----PYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLI 160
             ++ +    +        ++++ G NR G    EA          + + + + +
Sbjct: 133 RLARALQDAQAGDAAMDVLVEINVGQNRCGAEPGEAAVVLAQAIAAQPVLRFAGL 187


>gi|161502497|ref|YP_001569609.1| hypothetical protein SARI_00541 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863844|gb|ABX20467.1| hypothetical protein SARI_00541 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 367

 Score = 49.7 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 115/364 (31%), Gaps = 64/364 (17%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N  +  AL  ++     AV K  D     GC + A A++N G+     + 
Sbjct: 6   LEINLRKLEENARTEKALLASSGIEVMAVNKVFD-----GCVETAQAVFNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G +H  
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSHEAQRQGKTHQV 119

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L VD G  R G+   E    L+      +    +L  + ++  C       V +   E 
Sbjct: 120 LLMVDMGDLREGIWFSEYQRILETITLIADLPALELYGLGTNFNCYGTVLPTVKNG--ED 177

Query: 182 FRTLISHY--------KGIEASLASSSGIL---LGPNYHFQLTRPGISLYGG-------- 222
           F  L +          + + A   +S  +L   + P+    L   G+  +G         
Sbjct: 178 FLALAARLEADSGIPVRRLSAGNCTSYHLLDKGIWPHGLNHLRIGGLHEFGIEYVDMKYL 237

Query: 223 TDKINKSHPMQTVVT----AEARIILIR---KALAGELVS----YGGQKKLTRDSLIAVA 271
            +  + + P+    +     EA II +        GEL                   A+ 
Sbjct: 238 NEFHHSAKPVDKACSDMYILEAEIIELNSKPTVPVGELGVDAFLQSKTFVDRGIRRRALL 297

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEV 330
           A G            D      V       I G         T D T+ DI D    ++V
Sbjct: 298 AFG----------RQDVPSDNCVPCDDAITILGQ--------TSDHTLVDIEDCRQPLKV 339

Query: 331 GDYI 334
           GD +
Sbjct: 340 GDVV 343


>gi|257453160|ref|ZP_05618459.1| Serine racemase [Fusobacterium sp. 3_1_5R]
 gi|317059695|ref|ZP_07924180.1| serine racemase [Fusobacterium sp. 3_1_5R]
 gi|313685371|gb|EFS22206.1| serine racemase [Fusobacterium sp. 3_1_5R]
          Length = 369

 Score = 49.3 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 48/162 (29%), Gaps = 25/162 (15%)

Query: 16  LKNNWHSMNALSG--NARTAAVVKDNAYGL---GCEKIAPALYNAGVQDFFVTSVEEGVK 70
           LK+N H    L          ++K         G  +I       G       ++EE   
Sbjct: 18  LKDNIHRYQKLCNQYGKELWPMIKT----HKSKGILEI-Q--IEEGASGALCGTLEEAEM 70

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-----ISSVPQLTFYSKLMSCGVS---- 121
            +    +  I      +P   K      +        I  +       K+    +     
Sbjct: 71  CQKMGVKK-IM---YAYPVSTKENIQRVIELASKSYFIIRLDNEEGAKKINEMAIKEDVI 126

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
             Y + VD+G +R G+S+   L F       +  +   I SH
Sbjct: 127 INYTIIVDSGLHRFGVSVDNILGFAEKLKQFQNLKFVGISSH 168


>gi|48427873|sp|P83944|ALR_PENMO RecName: Full=Alanine racemase
          Length = 120

 Score = 49.3 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 19/57 (33%)

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289
           Q   +   R    +   AG  + Y G    + D  IA    G++D     LS     
Sbjct: 1   QPAFSVVTRPTFYKLLKAGRDIGYDGTYTTSEDEWIANFTTGWSDQLSRRLSTRLPR 57


>gi|304392701|ref|ZP_07374641.1| pyridoxal phosphate enzyme, YggS family [Ahrensia sp. R2A130]
 gi|303295331|gb|EFL89691.1| pyridoxal phosphate enzyme, YggS family [Ahrensia sp. R2A130]
          Length = 233

 Score = 49.3 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 28/220 (12%)

Query: 21  HSMNALSGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV----KLRL 73
             +     +    AV K    +A       I PAL  AG + F    V+E      +LR 
Sbjct: 29  RKVERRGEDVTLIAVSKTFDADA-------ICPAL-EAGHRVFGENRVQESQGKWPELRA 80

Query: 74  YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM----SCGVSHPYALQVD 129
                 + ++  +   +     +  L  VI +V +      L       G +    +QV+
Sbjct: 81  EFSDVELHLIGPLQSNKSADAVE--LFDVIHTVDREKIAKALAGEMKKQGKTPKLFVQVN 138

Query: 130 TGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           TG      G++ +EA+ F     ++   ++  ++      ++P  H      E  R L  
Sbjct: 139 TGEEPQKAGIAPKEAVAFVQRCRDEHGLEIEGLMCIPPADENPGPHF-----ELLRKLAD 193

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
                  S+  S    +   +     R G +++G  D   
Sbjct: 194 EADVNGLSMGMSGDYQVAVQFGATHVRVGSAIFGVRDYPA 233


>gi|115401094|ref|XP_001216135.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190076|gb|EAU31776.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 367

 Score = 49.3 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 12/137 (8%)

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISS- 105
           L  AG +   V  + E   +        +     + P + + + +       +  V+ S 
Sbjct: 59  LAKAGAKGGCVAKISEAEAIAAQGFDDLLITCEIVGPAKVQRLVELYRKHRKIRIVVDSE 118

Query: 106 VPQLTFYSKLMSCGVSHPYA--LQVDTGFNRLGLSLQE-ALDFTHN---SFNKKLGQLSL 159
           V        L   G+  P A  + +D G +R G+   E AL    +     + KL  +  
Sbjct: 119 VAASAINDALARSGIDEPIATLIDLDVGLHRTGVKPGEPALALARHVGGLKHLKLIGVQG 178

Query: 160 IISHLACADDPSSHVNS 176
              HL    D +     
Sbjct: 179 YEGHLQHLHDYNDRKTQ 195


>gi|308188666|ref|YP_003932797.1| hypothetical protein Pvag_3206 [Pantoea vagans C9-1]
 gi|308059176|gb|ADO11348.1| Uncharacterized protein [Pantoea vagans C9-1]
          Length = 393

 Score = 49.3 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 52/284 (18%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           +++D   L+ N   M   +       V     +K          IA      G Q   V+
Sbjct: 35  IEVDAERLEQNLQHMQRKASAT---GVALRPHIKT----HKSVWIAQRQLEYGAQGVTVS 87

Query: 64  SVEEGVK-----LRLYTPQARI---------FVLYGIHPGQEKIIFD-TNLIPVISSVPQ 108
              EG+      +R       +           L  +H  +  +I D    +  I+   Q
Sbjct: 88  KPSEGISFIQGGVRDLLLAYPVVQPQSVAELLRLAVLHQAKLTLIADRLQGVAAIADAWQ 147

Query: 109 LTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACA 167
                 L         A++VD G +R+G++   +       +   +  + + ++SH   A
Sbjct: 148 QQPDCALA-------VAIKVDVGLHRIGVNPDSDEAVLIAQALRDRGLRFAGLVSHAGHA 200

Query: 168 DDPSSHVNSVQLERFRTLI----------SHYKGIEASLASSSGILLGPNYHF-QLTRPG 216
               +    V + R  T++          + +     S+ S+   L           RPG
Sbjct: 201 YGAGNAAAIVDVARQETVLMQQLQAKLQAAGFTDCPLSVGSTPTALAAEVAPGISEIRPG 260

Query: 217 --ISLYGGTDKINKSHPMQTVVTAEARIILIRK----ALAGELV 254
               L     ++  SH  Q  ++   R++ +        AG  +
Sbjct: 261 NYALLDLTACRLGLSHVDQLAMSVITRVVAVNDHFAIVDAGSKM 304


>gi|163858331|ref|YP_001632629.1| hypothetical protein Bpet4013 [Bordetella petrii DSM 12804]
 gi|163262059|emb|CAP44361.1| conserved hypothetical protein [Bordetella petrii]
          Length = 379

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 8/135 (5%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIP 101
            +A A   AG +   V++++E  +       A I    G+ P +            +L  
Sbjct: 52  PVAQAQLAAGARGITVSTLKEAEQFFEAGI-ADILYAVGMVPQRLPAALALRRRGCDLKI 110

Query: 102 VISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSL 159
           +  +       +      G      +++DT  +R G+   EA       + ++    L  
Sbjct: 111 ITDNAAAARAIAAFGREHGEVFEVWIEIDTDGHRSGIKPGEAALLEVGAALHEGGMTLGG 170

Query: 160 IISHLACADDPSSHV 174
           +++H   + D  +  
Sbjct: 171 VMTHAGSSYDLDTPA 185


>gi|289522792|ref|ZP_06439646.1| amidohydrolase family protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504628|gb|EFD25792.1| amidohydrolase family protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 86

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351
           MD  M DITD  + ++GD +   G      I  +++AL   
Sbjct: 1   MDQFMIDITDINNPKIGDEVVFLGRQGKELIAAEEIALLLN 41


>gi|307686808|ref|ZP_07629254.1| alanine racemase [Clostridium cellulovorans 743B]
          Length = 94

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104
              IA  L N       V  + E + LR    +  I ++  I P Q   I   ++ P++ 
Sbjct: 1   MIPIANELINYNSDALGVVRLSEALTLRKAGIKIPIMIISPIMPSQTSWIITHDITPMVD 60

Query: 105 SVPQLTFYSKLMSCGVSHPYALQVDTG---FNR 134
           +   +    K  +       +L+   G    NR
Sbjct: 61  NEEIIKALDKCAAEKNEI-VSLKGFPGDIFMNR 92


>gi|170078522|ref|YP_001735160.1| hypothetical protein SYNPCC7002_A1917 [Synechococcus sp. PCC 7002]
 gi|169886191|gb|ACA99904.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC
           7002]
          Length = 222

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 69/227 (30%), Gaps = 29/227 (12%)

Query: 14  TALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG---- 68
            A+  N   +   +    R  AV K         KI    Y AG++DF     +E     
Sbjct: 3   DAIAENIARLREEIPPEVRLIAVSKT----HSAAKI-RLAYAAGIRDFGENRFQEAQQKQ 57

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
            +L    P  R   +  +   + K      + I  + S+       +            L
Sbjct: 58  AELEDL-PDIRWHFIGHLQKNKAKKAITHFDWIHTVDSLALAQKLDQYAADLENPARCCL 116

Query: 127 QV----DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS------ 176
           Q+    D   N+ G  + + L         +  +L  +++ L      +    +      
Sbjct: 117 QIKPLPDP--NKFGWEIPQLLSELPQLATCQHLKLQGLMTILPLGLSRTETRTAFKQIFS 174

Query: 177 --VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
              QL +  +L      +  S+  S    L       + R G  ++G
Sbjct: 175 LKEQLNQMASLPEQLTEL--SMGMSGDYPLAIEAGATMIRVGQGIFG 219


>gi|119716914|ref|YP_923879.1| alanine racemase domain-containing protein [Nocardioides sp. JS614]
 gi|119537575|gb|ABL82192.1| alanine racemase domain protein [Nocardioides sp. JS614]
          Length = 360

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 104/326 (31%), Gaps = 45/326 (13%)

Query: 9   LKIDLTALKNNW-HSMN-------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L++D+  L+ N   +         +L  +A+T               IA     AG    
Sbjct: 13  LRVDVARLRANIERTTRWAAAGGVSLRPHAKT----------HKSPDIARLQLAAGAIGL 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQ------EKIIFDTNLIPVISSVPQLTFYSK 114
            V ++ E      +  +  +FV Y +   +        +    +L   + S       ++
Sbjct: 63  TVATIGEAEVFVEHGAE-DVFVAYPLWLTENGARRLRDLADRADLAIGVDSAEGARLAAR 121

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS--S 172
           L+  G      ++VD+G +R G+  ++A      +    L  +  + +    +  P    
Sbjct: 122 LLE-GSGVVALVEVDSGQHRSGVDAEDAGTVAAAAVEAGLP-VRGVFTFPGHSYSPDALR 179

Query: 173 HVNSVQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQ---LTRPGISLYG--GTDK 225
                +    R      +  G+E  + S        + H       RPG+  +G     +
Sbjct: 180 SAADDEARVLRAATESLRSFGLEPDVVSGGSTPSLAHTHTDELTELRPGVYAFGDAQQWE 239

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285
           +  + P    +T  A ++      AG  +      K       A     YA G+    + 
Sbjct: 240 LGSAAPDDLALTCRATVVS----HAGGRLVLDAGSKALGADRAA-----YATGWGRLPAY 290

Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILG 311
            D+             + G  +P LG
Sbjct: 291 PDARVVQLSEHHAVVDLTGAPLPRLG 316


>gi|167037459|ref|YP_001665037.1| alanine racemase domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115873|ref|YP_004186032.1| alanine racemase domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166856293|gb|ABY94701.1| alanine racemase domain protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928964|gb|ADV79649.1| alanine racemase domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 354

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 113/364 (31%), Gaps = 77/364 (21%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVT 63
           L+I+L  L+ N  ++  L    N +   V K            ++A  +   GV+    +
Sbjct: 5   LRINLVKLRENTQTIVNLCEKKNIKVVGVTKVFCA------IPEVAQTMVKGGVEILGDS 58

Query: 64  SVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121
            +     L+          +L      + + +     I + S +  +   S+        
Sbjct: 59  RI---KNLKKLQHIPVPKMLLRIPMKSEVEEVIKYADISLNSEIDTIKSLSEEAKKQRKI 115

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           H   L VD G  R G+  ++ +         +  +L  I ++L C        +      
Sbjct: 116 HEIILMVDLGDLREGVLKEDVIPIVEQIVKLEGIRLRGIGTNLTCYGSVIPTPD------ 169

Query: 182 FRTLISHYKGIEASLA-------------SSS-------GILLGPNYHFQLTRPGISLYG 221
              ++     I+ S+              +SS       G++          R G ++  
Sbjct: 170 ---ILEELVEIKNSINKKFNLNLDIVSGGNSSSLYLVQNGLIPREITQL---RIGEAIVL 223

Query: 222 GTDKINKSHPMQT---VVTAEARIILIRK-------ALAGELVSYGGQKKLTRDSLIAVA 271
           G +         T   V T EA+I+ +++        L  +                A+ 
Sbjct: 224 GRETAFGDRIPHTYDDVFTLEAQIVELKEKPSYPRGILGMDAFGERQVYVDRGIMKRAIL 283

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEV 330
           AIG           ++        +            ++G  + D  + ++T+S    +V
Sbjct: 284 AIG------RQDVNMNDLIPIDSSI-----------ELIGS-SSDHLIVNVTNSTYPYKV 325

Query: 331 GDYI 334
           GD I
Sbjct: 326 GDII 329


>gi|218246529|ref|YP_002371900.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
           8801]
 gi|218167007|gb|ACK65744.1| alanine racemase domain protein [Cyanothece sp. PCC 8801]
          Length = 224

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 42/235 (17%)

Query: 13  LTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFFVTSVEEG 68
           L  ++ N         + R  AV K         +++       Y AGV+DF  + ++E 
Sbjct: 7   LDQIRQNI------PPHVRLIAVTK---------QVSIDAIKEAYQAGVRDFAESRLQEA 51

Query: 69  V-------KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           +        LR  +       +  +   + K I +      I SV  L    +L      
Sbjct: 52  LPKQAQLQDLRDISWH----FIGHLQANKAKKILEHFHW--IHSVDNLKIAQRLNRLAAE 105

Query: 122 HPY------ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                     +++    N+ G  + E +         +  ++  +++ L         + 
Sbjct: 106 ESIDPNICLQVKILPDPNKYGWQVSELIADLPQLEQCQQLKIQGLMTILPLGLSDKEILA 165

Query: 176 SVQ----LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
           + Q    LE      S     E S+  S   LL       + R G  ++G  + I
Sbjct: 166 AFQQTKVLETQINNQSTLSLNELSMGMSGDYLLAIQAGATMIRLGTIIFGERNSI 220


>gi|209519839|ref|ZP_03268623.1| alanine racemase domain protein [Burkholderia sp. H160]
 gi|209499715|gb|EDZ99786.1| alanine racemase domain protein [Burkholderia sp. H160]
          Length = 378

 Score = 48.5 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 50/149 (33%), Gaps = 12/149 (8%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH--PGQEKIIFDT-----N 98
            ++  A   AG +   V++++E              +LY +   P +            +
Sbjct: 46  IEVVRAQIAAGARGITVSTLKEAEAFFAAGIDD---ILYAVSMVPSKLPRALALRRRGCD 102

Query: 99  LIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQ 156
           L  V+ +       +      G +    ++VDT  +R G+  ++          ++   +
Sbjct: 103 LKLVVDNPTAAAAIAAFGDQHGETFEVWIEVDTDGHRSGIQPEQQTLLDVGRILHENGVK 162

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTL 185
           +  +++H   + + ++      L      
Sbjct: 163 VGGVMTHAGSSYELNTPEALAALAEQERA 191


>gi|209527933|ref|ZP_03276419.1| alanine racemase domain protein [Arthrospira maxima CS-328]
 gi|209491623|gb|EDZ91992.1| alanine racemase domain protein [Arthrospira maxima CS-328]
          Length = 223

 Score = 48.5 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 68/232 (29%), Gaps = 37/232 (15%)

Query: 14  TALKNNWHSMNA-LSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
            ++      + A +    R  AV   V          +     Y AGV+DF    V+E  
Sbjct: 3   DSIAERIAQIRAAIPPEVRLVAVTKTV--------SVEAIRLAYEAGVRDFGENRVQEAE 54

Query: 70  K-------LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
                   LR  T      ++  +   +            + SV       +L       
Sbjct: 55  AKQLQLQDLRDITWH----LIGHLQSNKAATAIAHFDW--LHSVDSWKLAQRLDRLAREQ 108

Query: 121 ----SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS----HLACADDPSS 172
                    +++    N+ G ++ E L         +   +  +++     L      S 
Sbjct: 109 SRCPRICLQVKILPDPNKYGWTVPELLADLPQLNACESLNIQGLMTIPPQGLTETQTRSV 168

Query: 173 HVNSVQL--ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
              + QL  E      SH K  E S+      LL       + RPG  ++G 
Sbjct: 169 FEKTRQLAAEIGAQNWSHIKMAELSMVCQGTYLLAVEAGATMIRPGQIIFGP 220


>gi|254469935|ref|ZP_05083340.1| alanine racemase, N-terminal domain protein [Pseudovibrio sp.
           JE062]
 gi|211961770|gb|EEA96965.1| alanine racemase, N-terminal domain protein [Pseudovibrio sp.
           JE062]
          Length = 375

 Score = 48.5 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII----FDTNLI 100
              +A  L + G   + V++++E      +  +  ++ +  +    E+I+        + 
Sbjct: 44  SIDVARILQDHGADRWTVSTLKEAEYFSSFGLKDILYAVSIVPQKMERIMQLNRAGAQMS 103

Query: 101 PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLS 158
             + S    T  S +   G      L+VD   +R G+   +  A+D      N    + +
Sbjct: 104 ICLDSTEMATHLSTMTLDGPKPRVYLEVDVDGHRTGVKADQQRAVDVARILANASNLEFA 163

Query: 159 LIISH 163
            +++H
Sbjct: 164 GVMAH 168


>gi|257059562|ref|YP_003137450.1| alanine racemase [Cyanothece sp. PCC 8802]
 gi|256589728|gb|ACV00615.1| alanine racemase domain protein [Cyanothece sp. PCC 8802]
          Length = 224

 Score = 48.5 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 42/235 (17%)

Query: 13  LTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFFVTSVEEG 68
           L  ++ N         + R  AV K         +++       Y AGV+DF  + ++E 
Sbjct: 7   LDQIRQNI------PPHVRLIAVTK---------QVSIDAIKEAYQAGVRDFAESRLQEA 51

Query: 69  V-------KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           +        LR  +       +  +   + K I +      I SV  L    +L      
Sbjct: 52  LPKQAQLQDLRDISWH----FIGHLQANKAKKILEHFHW--IHSVDNLKIAQRLNRLAAE 105

Query: 122 HPY------ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                     +++    N+ G  + E +         +  ++  +++ L         + 
Sbjct: 106 ESIDPNICLQVKILPDPNKYGWQVSELIADLPQLEQCQQLKIQGLMTILPLGLSDKEILA 165

Query: 176 S-VQLERFRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
           +  Q +   T I++   +   E S+  S   LL       + R G  ++G  + I
Sbjct: 166 AFQQTKALETQINNQSTLSLNELSMGMSGDYLLAIRAGATMIRLGTIIFGERNSI 220


>gi|254719796|ref|ZP_05181607.1| hypothetical protein Bru83_09663 [Brucella sp. 83/13]
 gi|265984815|ref|ZP_06097550.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
 gi|306839492|ref|ZP_07472300.1| conserved hypothetical protein [Brucella sp. NF 2653]
 gi|264663407|gb|EEZ33668.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
 gi|306405437|gb|EFM61708.1| conserved hypothetical protein [Brucella sp. NF 2653]
          Length = 226

 Score = 48.5 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 24/224 (10%)

Query: 12  DLTALKNNW----HSMNALSGNARTAAVVKD-NAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           +L A+K             +G+    AV K  +A      +      +AG + F    V+
Sbjct: 7   NLNAVKAVIARAEKEARRKNGSVTLVAVSKTFDA------QAIRPALDAGQRVFGENRVQ 60

Query: 67  EGV----KLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVP-QLTFYSKLMSCGV 120
           E       LR       + ++  +   +        ++I  +          S++   G 
Sbjct: 61  EAQGKWPALREAWAGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120

Query: 121 SHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           S    +QV+TG      G+  QEA+ F      +    +  ++      ++P  H     
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHF---- 176

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
                 L       + S+  S        +     R G +++GG
Sbjct: 177 -ALLEKLAREAHVEKLSMGMSGDYETAIGFGATSVRVGSAIFGG 219


>gi|239817773|ref|YP_002946683.1| alanine racemase domain protein [Variovorax paradoxus S110]
 gi|239804350|gb|ACS21417.1| alanine racemase domain protein [Variovorax paradoxus S110]
          Length = 232

 Score = 48.5 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 38/240 (15%)

Query: 12  DLTALKNNWHSMNALS------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           DL  +KN      A +         R  AV K         +     + AG + F    V
Sbjct: 7   DLQQVKN--RIAKACAEHGRNPAEVRLLAVSKTFG-----PEAVREAHAAGQRAFGENYV 59

Query: 66  EEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
           +EG+     L     +     +  +   + + + +      +  + +L    +L +   +
Sbjct: 60  QEGLDKIAALSDLRAELEWHCIGPLQSNKTRPVAEHFDW--VHGIDRLKIAERLSAQRPA 117

Query: 122 HP------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           H         + VD G N+ G+  +EAL            +L  ++     A    +   
Sbjct: 118 HLPPLQVCLQVNVDGGANKSGVPPEEALPLARAVAALPHLRLRGLM-----AIPEPAPDF 172

Query: 176 SVQLERFRTLISHYKGIE--------ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
           + Q E      + Y  I          SL  S+ +    +    + R G +++GG  K  
Sbjct: 173 AAQRELCLRARAVYDAIRDAGVELDTLSLGMSADLEAAVSAGSTMVRIGTAIFGGRPKAA 232


>gi|282855759|ref|ZP_06265065.1| alanine racemase domain protein [Pyramidobacter piscolens W5455]
 gi|282586391|gb|EFB91653.1| alanine racemase domain protein [Pyramidobacter piscolens W5455]
          Length = 369

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 48/188 (25%), Gaps = 27/188 (14%)

Query: 9   LKIDLTALKNNWHSM--------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L ID   +++N   M          L  + +T               +A      G +  
Sbjct: 11  LLIDREIMRDNMRFMLDYAARHGAKLRPHTKT----------HKMPAVARLQVEMGARGI 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLY---GIHPGQEKIIFDTNLIPVISSVPQLTFY----S 113
            V  V E   +        IF+     G+   +         + V   V           
Sbjct: 61  AVAKVGEAEAMAADGLD-DIFIANEIVGVQKWERIRALAQRGVTVSFGVDSPETLPGIQK 119

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                       ++++ G  R G+  + +              +   I SH   +     
Sbjct: 120 VFSGADRPAEVMIEIEVGEGRSGVVEENDFAALLAAIRRCPAVRFKGIFSHDGNSYSAKD 179

Query: 173 HVNSVQLE 180
             + +++ 
Sbjct: 180 REDLIRIA 187


>gi|219853015|ref|YP_002467447.1| Orn/DAP/Arg decarboxylase 2 [Methanosphaerula palustris E1-9c]
 gi|219547274|gb|ACL17724.1| Orn/DAP/Arg decarboxylase 2 [Methanosphaerula palustris E1-9c]
          Length = 404

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 27/186 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           ID   ++ N+        + +    VK N+      +I   L++ G   F V S+ E + 
Sbjct: 46  IDHEKIRQNYREFREHLPDVQVYFAVKANS----NPEIVKTLFDMGCS-FDVASMPEFMV 100

Query: 71  L-----------RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
           +           R      +I     I P   + I   N    + +        K+ +  
Sbjct: 101 VYENIKDLPDKERQEWIWDKIIYANTIKP--IETIEALNQYKPLVTFDNSEELKKIRTYA 158

Query: 120 VSHPYALQV---DTG-----FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                 L++   +TG      ++ G    EA+D    +F   L     +  H+       
Sbjct: 159 PHAGLVLRIRVPNTGSMVELSSKFGAEPGEAVDLISEAFAMGLV-TEGLSFHVGSQCTNF 217

Query: 172 SHVNSV 177
            +    
Sbjct: 218 DNYVQA 223


>gi|239815227|ref|YP_002944137.1| alanine racemase domain protein [Variovorax paradoxus S110]
 gi|239801804|gb|ACS18871.1| alanine racemase domain protein [Variovorax paradoxus S110]
          Length = 381

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 40/221 (18%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +DL AL  N   M A +         + +T              +IA     AG    
Sbjct: 26  LLLDLGALTRNIERMAAFAKARGVGLRPHVKT----------HKSVEIARRQVAAGAIGV 75

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNL-----IPVISSVPQLTFYSK 114
              ++ E   +        +     + P +   +     L     + V+   P+      
Sbjct: 76  SCVTLGEAEVMVKAGIPDVLITSPAVTPSKIARVVKLARLAGPGGMMVVVDDPRNAADLA 135

Query: 115 LMSCGVSHPYALQVD--TGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
             + G+ HP  + VD   G+NR G  S  + L+       +   +L  +    A A +  
Sbjct: 136 AATLGLPHPLEVLVDYGAGYNRTGAASEAQVLELARRIAAEPRLKLRGLQ---AYAGNLQ 192

Query: 172 SHVNSVQ--------LERFRTLISHYK--GIEASLASSSGI 202
             V+  Q         E    +++  +  GI   + + +G 
Sbjct: 193 HIVDREQRSAAAASLRETIARIVAEAERNGIHFEIVTGAGT 233


>gi|163929821|dbj|BAF95910.1| chicken D-serine dehydratase [Gallus gallus]
          Length = 376

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 37/195 (18%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGV------ 57
           L ID T  + N   M       R   V     VK              L   G+      
Sbjct: 15  LTIDRTTARRNAERMRER---CRALGVRLRPHVKT----H------KTL-EGGLLATGGT 60

Query: 58  -QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF--DTNLIPVISSVPQLTFYSK 114
            +   V+++ E            I + Y +   + +        L      + +    + 
Sbjct: 61  RRGIAVSTLAEARFFADGGFD-DILLAYPVPTARLEECAGLARRLDAFHVLLDRPEALAS 119

Query: 115 LMSC----GVSHPYALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLS--LIISHLAC 166
           L       G      L++D G  R G+   +  AL+      N    +++   + +H   
Sbjct: 120 LRQRPLGHGKRWLVWLKLDCGNGRAGVRPTDPAALELAQAIANDAPEEVTLVGVYAHCGN 179

Query: 167 ADDPSSHVNSVQLER 181
               S       + R
Sbjct: 180 TYGCSGADTIQAIAR 194


>gi|254467580|ref|ZP_05080989.1| threonine aldolase, low-specificity [Rhodobacterales bacterium Y4I]
 gi|206684328|gb|EDZ44812.1| threonine aldolase, low-specificity [Rhodobacterales bacterium Y4I]
          Length = 387

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 65/225 (28%), Gaps = 49/225 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYNA-- 55
           L +DL AL+ N   M   +         K      G              +A  L     
Sbjct: 32  LVLDLDALERNIKKMGDYA---------KA----HGMRHRVHGKMHKSVDVAK-LQEELG 77

Query: 56  GVQDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVP 107
           G     V    V E         +  I V   +  P +   +          I  +  + 
Sbjct: 78  GA--VGVCCQKVSEAEVFARGGIK-DILVSNQVRDPQKIDRLARLPKLGARTIVCVDDID 134

Query: 108 QLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI----- 160
            +   S      G      +++D G  R G++  EA ++        +  + S I     
Sbjct: 135 NVADLSAAAQKHGTELEVFVEIDCGAGRCGVTTTEAVVEIAKAVNAAENLKFSGIQAYQG 194

Query: 161 -ISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            + H+  + +       + + +    +   K  GIE  L S  G 
Sbjct: 195 AMQHM-DSYEDRKAKLDIAIAQVADAVEGLKAEGIECELVSGGGT 238


>gi|313677340|ref|YP_004055336.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
 gi|312944038|gb|ADR23228.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
          Length = 356

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 28/236 (11%)

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            + +    +H   + V+TG  R G+     +DF    F     Q+  I ++L C      
Sbjct: 108 DEAVRQNKTHKVIIMVETGDLREGVMGDHLIDFYAKVFELPNIQIEGIGTNLNCLHGVMP 167

Query: 173 HVNSV-QLERFRTLISHYKGIEASLASSSGILLGP-------NYHFQLTRPGISLYGGTD 224
             + + QL  ++ +I      +  L S    +  P              R G +LY G +
Sbjct: 168 SQDKLIQLSLYKQIIELKFNRKLPLVSGGTSVTIPLIMNKQIPAGVNHFRIGETLYFGAN 227

Query: 225 KINKSH---PMQTVVTAEARIILIRK---ALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278
              ++         +     II I +      GE+ +    +    D  +      Y   
Sbjct: 228 LFEETTIEGMHDDCLELFTEIIEITEKPKVPMGEMAANPQGETTEIDESL------YG-- 279

Query: 279 YPLTLSGLDSEHSPSVFLGGKGFI-KGYMVPILGKITMDMTMFDITDSLSI-EVGD 332
                S         + +  K  I +GY   I+G  + DM + D+ D+    +VGD
Sbjct: 280 ---ETSYRAILDIGVLDIDPKYLILEGYNFEIVGS-SSDMIVIDLGDNPEKRKVGD 331


>gi|167040121|ref|YP_001663106.1| alanine racemase domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|300914206|ref|ZP_07131522.1| alanine racemase domain protein [Thermoanaerobacter sp. X561]
 gi|307724559|ref|YP_003904310.1| alanine racemase domain-containing protein [Thermoanaerobacter sp.
           X513]
 gi|166854361|gb|ABY92770.1| alanine racemase domain protein [Thermoanaerobacter sp. X514]
 gi|300889141|gb|EFK84287.1| alanine racemase domain protein [Thermoanaerobacter sp. X561]
 gi|307581620|gb|ADN55019.1| alanine racemase domain protein [Thermoanaerobacter sp. X513]
          Length = 354

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 113/364 (31%), Gaps = 77/364 (21%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVT 63
           L+I+L  L+ N  ++  L    N +   V K            ++A  +   GV+    +
Sbjct: 5   LRINLVKLRENTQTIVNLCEKKNIKVVGVTKVFCA------IPEVAQTMVKGGVEILGDS 58

Query: 64  SVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121
            +     L+          +L      + + +     I + S +  +   S+        
Sbjct: 59  RI---KNLKKLQHIPVPKMLLRIPMKSEVEEVIKYADISLNSEIDTIKSLSEEAKKQRKI 115

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           H   L VD G  R G+  ++ +         +  +L  I ++L C        +      
Sbjct: 116 HEIILMVDLGDLREGVLKEDVIPIVEQIVKLEGIRLRGIGTNLTCYGSVIPTPD------ 169

Query: 182 FRTLISHYKGIEASLA-------------SSS-------GILLGPNYHFQLTRPGISLYG 221
              ++     I+ S+              +SS       G++          R G ++  
Sbjct: 170 ---ILEELVEIKNSINKKFNLNLDIVSGGNSSSLYLVQNGLIPRGITQL---RIGEAIVL 223

Query: 222 GTDKINKSHPMQT---VVTAEARIILIRK-------ALAGELVSYGGQKKLTRDSLIAVA 271
           G +         T   V T EA+I+ +++        L  +                A+ 
Sbjct: 224 GRETAFGDRIPHTYDDVFTLEAQIVELKEKPSYPRGILGMDAFGERQVYVDRGIMKRAIL 283

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEV 330
           AIG           ++        +            ++G  + D  + ++T+S    +V
Sbjct: 284 AIG------RQDVNMNDLIPIDSSI-----------ELIGS-SSDHLIVNVTNSTYPYKV 325

Query: 331 GDYI 334
           GD I
Sbjct: 326 GDII 329


>gi|225012998|ref|ZP_03703415.1| alanine racemase domain protein [Flavobacteria bacterium MS024-2A]
 gi|225002897|gb|EEG40876.1| alanine racemase domain protein [Flavobacteria bacterium MS024-2A]
          Length = 369

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 20/158 (12%)

Query: 16  LKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           +K N  +M +++G   R    +K         ++     + G++ F   ++ E V+L   
Sbjct: 27  VKKNISAMISIAGGTERLWPHIKT----HKMGEVVKLQMDQGIKRFKCATLGE-VEL--- 78

Query: 75  TPQARI-FVLYGIHPGQEKIIF---------DTNLIPVISSVPQLTFYSKLM-SCGVSHP 123
                +  +L    P  EK+++         +     ++ +   L  YS L         
Sbjct: 79  LISCNVSHILLAHQPTHEKVMYFLSLQAKNPNIRFSTLVDNYDSLELYSDLATQENQKLS 138

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
             + ++ G NR G+  + AL        K   +   + 
Sbjct: 139 LWIDINNGMNRTGILPELALSLYQRLIKKNALKFQGLH 176


>gi|85712848|ref|ZP_01043890.1| Predicted enzyme with a TIM-barrel fold [Idiomarina baltica OS145]
 gi|85693312|gb|EAQ31268.1| Predicted enzyme with a TIM-barrel fold [Idiomarina baltica OS145]
          Length = 231

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 37/232 (15%)

Query: 12  DLTALKNNWHSMNALS---GNARTAAV-VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            L  ++ N ++M   +    + R  AV  K        E I    Y AG ++F    V+E
Sbjct: 12  SLGQIRQNINAMAEQTTYRESVRLLAVSKK-----HSAEAI-RVAYEAGQREFAENYVQE 65

Query: 68  GVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---- 119
           GV     L+             +   + K++ +      + S+ +     +L        
Sbjct: 66  GVAKVQQLQALDITWHFI--GPLQSNKTKLVAEHFDW--VQSIDREKIARRLNDQRSGAL 121

Query: 120 --VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
             ++    + +D   N+ G+   +              +L  I++ L    D        
Sbjct: 122 PPLNVLLQVNIDNDPNKSGVKKSDINALAKFVSKCPHLKLRGIMTILEADTDE-----KQ 176

Query: 178 QLERF---RTLISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYG 221
           QL+ F   R L    + +  S+ + S  + G           + R G +++G
Sbjct: 177 QLDSFTSMRELYQQLQQLHPSVDTLSMGMSGDMRQAIHAGANMVRIGSAIFG 228


>gi|330895722|gb|EGH28012.1| alanine racemase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 31

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFYT 370
             +VA  + T  Y++   +  R  + Y+
Sbjct: 3   ASEVAQRAETIPYEIFCNL-RRVPRIYS 29


>gi|330505390|ref|YP_004382259.1| alanine racemase domain-containing protein [Pseudomonas mendocina
           NK-01]
 gi|328919676|gb|AEB60507.1| alanine racemase domain-containing protein [Pseudomonas mendocina
           NK-01]
          Length = 230

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 38/213 (17%)

Query: 44  GCEKIAPA--------LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEK 92
           G   ++           + AG++DF    ++E ++ +         +      I   + +
Sbjct: 30  GLLAVSKTKPAEAIREAHAAGLRDFGENYLQEALE-KQTQLTDLPLIWHFIGPIQSNKTR 88

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFT 146
            I +      + SV +L    +L     +H   L +    N      + G S +E  +  
Sbjct: 89  PIAEHFDW--VHSVDRLKIAQRLSDQRPAHLPPLNICLQVNVSGEDSKSGCSPEELPELA 146

Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-----HYKGIEASLASS-- 199
                    QL  +++      +P+  V + Q   F  L              S+  S  
Sbjct: 147 KAIAALPNLQLRGLMT----IPEPTEDVTA-QHAAFARLRQLRDDLALDLDTLSMGMSHD 201

Query: 200 --SGILLGPNYHFQLTRPGISLYGGTDKINKSH 230
             + I  G        R G +L+G  D    +H
Sbjct: 202 LEAAIAEGAT----WVRIGTALFGARDYGQPTH 230


>gi|262066081|ref|ZP_06025693.1| amino acid racemase [Fusobacterium periodonticum ATCC 33693]
 gi|291380175|gb|EFE87693.1| amino acid racemase [Fusobacterium periodonticum ATCC 33693]
          Length = 355

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 106/365 (29%), Gaps = 66/365 (18%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNART-AAVV-K---DNAYGLGCEKIAPALYNAG--VQ 58
           + RL+I++  LK N   ++ L        A+V K    N        I   L      V 
Sbjct: 2   YPRLEININKLKTNLQVISNLLKKNNLSLAMVTKAYCAN------VNIVTELVKDNNLVD 55

Query: 59  DFFVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
               + +E    L+          +L      + + +     I   S    L   +++  
Sbjct: 56  YLADSRIE---NLKKMKDINIPKILLRIPMKSEVEEVVKYADISFNSEYETLEKLNEVAK 112

Query: 118 CGVS-HPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                H   + VD G  R G  ++ + L+      +     +  + ++L C         
Sbjct: 113 KNNKIHKVVIMVDLGDLREGYFVEKDLLENIKKIHDLHNISIIGLATNLTCYGSVLPSE- 171

Query: 176 SVQLERFRTLISHYKGIE---------ASLASSSGIL-----LGPNYHFQLTRPGISLYG 221
               E    L++  + IE          S  +SS +        P+    L      L G
Sbjct: 172 ----ENLSKLVNLAEKIEKNFHIKMQIISGGNSSSLFLLNENRLPSKINNLRVGEAILLG 227

Query: 222 GTDKINKSHP--MQTVVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIAVAA 272
                 +        V      +I  ++      GE          + +        +  
Sbjct: 228 RETAYGEDIDGTYNDVFKLVCEVIENKEKPSVPIGERGLDAFGNQVEYEDKGIMQRVIIG 287

Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVG 331
           IG                       G  F     + ++G  + D T+ D+T  +   +VG
Sbjct: 288 IG-----------------RQDISIGHFFPIDKKIEVVGA-SSDHTILDVTHCVKKYQVG 329

Query: 332 DYIQI 336
           D I+ 
Sbjct: 330 DLIEF 334


>gi|239617209|ref|YP_002940531.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506040|gb|ACR79527.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 218

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 61/184 (33%), Gaps = 15/184 (8%)

Query: 52  LYNAGVQDFFVTSVEEG-VKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVP-Q 108
              AG++      V+E          +A+  ++  +   + K      ++I  + SV   
Sbjct: 35  AIEAGIEIIGENYVQEAQKAFEAVGKKAQWHMIGHLQKNKVKKAVQIFDMIQTVDSVKIA 94

Query: 109 LTFYSKLMSCGVSHPYALQVDTGFN--RLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
                +    G   P  ++V++G    + G+  ++           +  ++  +++    
Sbjct: 95  NEINKRAAQFGKVMPVLIEVNSGREEQKAGVLPEDVFRLVEEISKLENIRIEGLMTMGPV 154

Query: 167 ADDPSS--HVNSVQLERFRTLIS------HYKGIEASLASSSGILLGPNYHFQLTRPGIS 218
            D P       S+  E F  L          K +   ++ S  I +       + R G  
Sbjct: 155 VDAPEELRPYFSLTRELFENLSREKLPGVEMKWLSMGMSDSYKIAIKEGA--NMIRLGTI 212

Query: 219 LYGG 222
           L+G 
Sbjct: 213 LFGP 216


>gi|33599435|ref|NP_886995.1| putative metal-activated pyridoxal enzyme [Bordetella
           bronchiseptica RB50]
 gi|33567031|emb|CAE30944.1| putative metal-activated pyridoxal enzyme [Bordetella
           bronchiseptica RB50]
          Length = 381

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 26/180 (14%)

Query: 9   LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
             +D+  +++N   M         +L  + +T+   K       C  +A A   AG +  
Sbjct: 17  AIVDVARMQHNIARMQDRMNGLGVSLRPHVKTS---K-------CTPVALAQLAAGARGV 66

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKL 115
            V++++E  +       A I    G+   +            +L  +  +       +  
Sbjct: 67  TVSTLKEAEQFFAAGI-ADILYAVGMAEHRLPAALALRRRGCDLKIITDNAESARTIADF 125

Query: 116 -MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSH 173
             +        +++DT  +R G+  +EA      +   + G +L  +++H   + D  + 
Sbjct: 126 GRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDTP 185


>gi|260576176|ref|ZP_05844169.1| alanine racemase domain protein [Rhodobacter sp. SW2]
 gi|259021656|gb|EEW24959.1| alanine racemase domain protein [Rhodobacter sp. SW2]
          Length = 372

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 20/181 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLG----CEKIAPALYNAGVQDFFVT 63
           L +DL AL+ N  SM + +  A     V        G      +IA     AG       
Sbjct: 26  LILDLDALEANIASMQSQADAAGVRLRV-------HGKMHKSAEIAQMQIAAGACGICCQ 78

Query: 64  SVEEGVKLRLYTPQARIFV---LYGIHPGQEKI---IFDTNLIPVISSVPQLTFYSKLMS 117
            V E         +  I +   + G           +    ++  +     +   S    
Sbjct: 79  KVSEAEAFARAGLR-DILITNQVRGAVKTDRLARLPLLGARILTCVDDPANVAELSAAAQ 137

Query: 118 C-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
             G      +++D G  R G++  +A             + + + ++   A   +  V  
Sbjct: 138 RHGTEIEVLVEIDCGAGRCGVAPDQAPGLAQAIVAAPGLRFAGLQAYQGSAQHQADPVAR 197

Query: 177 V 177
            
Sbjct: 198 R 198


>gi|326390148|ref|ZP_08211709.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993796|gb|EGD52227.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 354

 Score = 47.7 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 114/364 (31%), Gaps = 77/364 (21%)

Query: 9   LKIDLTALKNNWHSMNALSG--NARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVT 63
           L+I+L  L+ N  ++  L    N +   V K            ++A  +   GV+    +
Sbjct: 5   LRINLEKLRENTQTIVNLCEKRNIKVVGVTKVFCA------IPEVAQTMVKGGVEILGDS 58

Query: 64  SVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121
            +     L+          +L      + + +     I + S +  +   S+        
Sbjct: 59  RI---KNLKKLQHIPVPKMLLRIPMKSEVEEVIKYADISLNSEIDTIKSLSEEAKKQRKI 115

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
           H   L VD G  R G+  ++ +         +  +L  I ++L C        +      
Sbjct: 116 HEIILMVDLGDLREGVLKEDVIPIVEQIVKLEGIRLRGIGTNLTCYGSVIPTPD------ 169

Query: 182 FRTLISHYKGIEASLA-------------SSS-------GILLGPNYHFQLTRPGISLYG 221
              ++     I+ S+              +SS       G++          R G ++  
Sbjct: 170 ---ILEELVEIKNSINKKFNLNLDIVSGGNSSSLYLVQNGLIPRGITQL---RIGEAIVL 223

Query: 222 GTDKINKSHPMQT---VVTAEARIILIRK-------ALAGELVSYGGQKKLTRDSLIAVA 271
           G +         T   V T EA+I+ +++        L  +                A+ 
Sbjct: 224 GRETAFGDRIPHTYDDVFTLEAQIVELKEKPSYPRGILGMDAFGERQVYVDRGIMKRAIL 283

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEV 330
           A+G  D     ++ L    S    +G                + D  + ++T+S    +V
Sbjct: 284 AVGKQDV---NMNDLIPMDSSIELIGS---------------SSDHLIVNVTNSQYPYKV 325

Query: 331 GDYI 334
           GD I
Sbjct: 326 GDII 329


>gi|323452296|gb|EGB08170.1| hypothetical protein AURANDRAFT_26439 [Aureococcus anophagefferens]
          Length = 385

 Score = 47.7 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 28/185 (15%)

Query: 16  LKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVE 66
           LK N   M + +         + +T   VK     LG   IA      G +    V+++ 
Sbjct: 34  LKANAARMRSRAERLGCELRPHFKT---VKT----LGAATIAT----GGTKRKLTVSTLA 82

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKLMSCGVS 121
           E   L        I     + P +   + D          ++  + Q+T   + M     
Sbjct: 83  EAFFLEAGGFD-DIVYAVPLTPDKIDDVEDLSCRLEKFYVMVDHMDQVTPLLERMEGEPV 141

Query: 122 HPYALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
               + VD G++R G+     E+L         +  + + + +H   + D +S  +   +
Sbjct: 142 VKVLVGVDCGYHRDGVDPDDPESLKLVEAIVACEDLEFAGLYTHGGHSYDCASVEDVRAI 201

Query: 180 ERFRT 184
            R   
Sbjct: 202 ARAER 206


>gi|264680539|ref|YP_003280449.1| hypothetical protein CtCNB1_4407 [Comamonas testosteroni CNB-2]
 gi|262211055|gb|ACY35153.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 240

 Score = 47.7 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 30  ARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRLY----TPQA 78
            +  AV K    +A              AG + F    ++E V+    LR          
Sbjct: 29  VQLLAVSKTFGADA--------VREAVLAGQRSFGENYIQEAVEKIAALRAMQLAGGEAL 80

Query: 79  RIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCG---VSHPYALQVDTGFNR 134
           +   +  I   + +++ +  +    +  +      S     G   ++    + VD G  +
Sbjct: 81  QWHCIGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQGMARLNVCIQVNVDGGATK 140

Query: 135 LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA 194
            G+  ++AL+           QL  I+S         +     Q    +   + ++ I+A
Sbjct: 141 SGVMAEQALELAEAMVKLPNLQLRGIMS-----IPDDAPDFEAQCAVHKKAKAVFESIKA 195

Query: 195 S 195
           S
Sbjct: 196 S 196


>gi|254513241|ref|ZP_05125306.1| threonine aldolase family protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221532245|gb|EEE35241.1| threonine aldolase family protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 382

 Score = 47.7 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 71/263 (26%), Gaps = 35/263 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV--VKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L +DL   K N      +  +   A    +K          IA     A    F V S+ 
Sbjct: 32  LLVDLPVFKQNIERAAQMVADTGKAFTPHLKA----HKTPDIAEMQCAASAAGFCVASIG 87

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKLMSCGVS 121
           E      Y           +   Q   I         L  V+ + P +   + L +   +
Sbjct: 88  EAEVFAKYGDTPLTITSATVTGRQMARIAALSKQVSELTVVVDTPPNIRALANLDA---T 144

Query: 122 HPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLI------ISHLACADDPSS-- 172
               + +D G  R   + + +A+             L+ +      +SH+    D     
Sbjct: 145 VSVLIDIDMGRGRSACTEEAQAVHLAREIMGAPNLNLAGLQCYAGQLSHMNDFHDREEQA 204

Query: 173 HVNSVQLERFRTLISHYKGIEASLA-----------SSSGILLGPNYHFQLTRPGISLYG 221
             +  +   F   +          +           +SS +       + L      L  
Sbjct: 205 AASDRRAGAFLAAVGSIADGPLRCSGGSTGASMFDLASSALTDLQWGSYALMDVEYGLVQ 264

Query: 222 GTDKINKSHPMQTVVTAEARIIL 244
            T   N   P +  +    R+I 
Sbjct: 265 ATPDGN-PLPFEPALRVATRVIS 286


>gi|297622385|ref|YP_003703819.1| diaminopimelate decarboxylase [Truepera radiovictrix DSM 17093]
 gi|297163565|gb|ADI13276.1| diaminopimelate decarboxylase [Truepera radiovictrix DSM 17093]
          Length = 385

 Score = 47.7 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 12/127 (9%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF--VTSVEE-G 68
           DL A+ +    + A    A     VK N            L +         V SV E  
Sbjct: 24  DLDAIGDRVARLRAALPTAELLYAVKAN-------PCGAVLRHLAAAGLGAEVISVGELA 76

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYALQ 127
              R   P+ RI  L G       +     +    + +  Q   + +  +   +  + L+
Sbjct: 77  RARRAGFPEGRIL-LGGPRQDPPLVAAAWGVGWVSLDNPSQWRGWQRFAAREGAPRFLLR 135

Query: 128 VDTGFNR 134
           ++ G + 
Sbjct: 136 LNPGLDP 142


>gi|85858964|ref|YP_461166.1| alanine racemase domain-containing protein [Syntrophus
           aciditrophicus SB]
 gi|85722055|gb|ABC76998.1| alanine racemase, N-terminal domain protein [Syntrophus
           aciditrophicus SB]
          Length = 232

 Score = 47.7 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 62/182 (34%), Gaps = 33/182 (18%)

Query: 14  TALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKI--APA--LYNAGVQ 58
            A++NN   +      A           R  AV K         K+  +       AG+ 
Sbjct: 4   EAIRNNIAEIRERIAGAATRAGRQVSEIRLMAVTK---------KVQESRIGQALEAGID 54

Query: 59  DFFVTSVEEGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY----S 113
                 ++EG   +       +  ++  +   + K      L  ++ SV +L        
Sbjct: 55  LCGENYIQEGKTKIEAIGHPPQWHMIGHLQTNKAKYAV--RLFDMVQSVDRLELAIELER 112

Query: 114 KLMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
           +  + G   P  ++V++G    + G++ +EA     +    +   +  +++     ++P 
Sbjct: 113 RARAAGRVLPVLIEVNSGGELTKSGVAPEEAESLIRSIALLENIAIEGLMTMPPWFENPE 172

Query: 172 SH 173
           + 
Sbjct: 173 TA 174


>gi|300718462|ref|YP_003743265.1| alanine racemase [Erwinia billingiae Eb661]
 gi|299064298|emb|CAX61418.1| Alanine racemase [Erwinia billingiae Eb661]
          Length = 386

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 83/266 (31%), Gaps = 34/266 (12%)

Query: 9   LKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           ++ID   L  N   M   +  GN R    VK          IA      G     V+   
Sbjct: 27  IEIDAQRLTRNLQQMQQRAATGNVRLRPHVKT----HKSVAIAQQQIALGAVGITVSKPS 82

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFD--------TNLIPVISSVPQLTFYSKLMSC 118
           EGV       +  +     +       +F           +I    +       +     
Sbjct: 83  EGVVFINGGVRDVLLAYPVVQAESVSALFAVAASSGCKLGVIVASQAGVAAIAQAAAAVT 142

Query: 119 GVSHPYALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACADDPSSH--- 173
            +     ++VD G  R+G++ +  EAL   H      L   + ++SH   A    +    
Sbjct: 143 SLDLSVWIKVDVGLGRVGVNPEGDEALQLAHAVQAAGL-HFAGLVSHAGHAYGAQNPQQM 201

Query: 174 -------VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTD- 224
                     +Q  R R   + +     S+ ++  IL  P    +   RPG   Y   D 
Sbjct: 202 AAIVQAEAQCMQGLRQRLHQAGFAQCALSVGATPSILGAPLPDGYDEIRPGN--YALCDL 259

Query: 225 ---KINKSHPMQTVVTAEARIILIRK 247
              ++      +  ++  AR++ +  
Sbjct: 260 TGLRLQLCTLDEVAISVVARVVSVND 285


>gi|239834636|ref|ZP_04682964.1| Serine racemase [Ochrobactrum intermedium LMG 3301]
 gi|239822699|gb|EEQ94268.1| Serine racemase [Ochrobactrum intermedium LMG 3301]
          Length = 418

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 50/176 (28%), Gaps = 25/176 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFV- 62
           ++ID   L  N   M   +  A    V     +K          IA      G     V 
Sbjct: 57  VEIDEDRLIRNLKEMQQKADKA---GVRLRPHIKT----HKSLMIANRQLQLGA--IGVT 107

Query: 63  TS-VEEGVKLRLYTPQARIFVLYGIHPGQE------KIIFDTNLIPVISSVPQLTFYSKL 115
            S  +E +        +       + P           I DT L+ + +    +      
Sbjct: 108 ASKPDEALVFVEGGIPSVTLAYPIVRPDSIGRLIRSAQIRDTELMFIAAHEIGIQAIGAA 167

Query: 116 MSC-GVSHPYALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACAD 168
                V     L+VD G  R+G+  Q+  A+              + + SH   A 
Sbjct: 168 AEAHDVKLGVFLKVDVGLGRVGVKPQDPAAVVLAQKIAQHPYLAFAGLFSHAGHAY 223


>gi|33595153|ref|NP_882796.1| putative metal-activated pyridoxal enzyme [Bordetella parapertussis
           12822]
 gi|33565230|emb|CAE36028.1| putative metal-activated pyridoxal enzyme [Bordetella
           parapertussis]
          Length = 361

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIP 101
            +A A   AG +   V++++E  +       A I    G+   +            +L  
Sbjct: 33  PVALAQLAAGARGVTVSTLKEAEQFFAAGI-ADILYAVGMAEHRLPAALALRRRGCDLKI 91

Query: 102 VISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSL 159
           +  +       +    +        +++DT  +R G+  +EA      +   + G +L  
Sbjct: 92  ITDNAESARTIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGG 151

Query: 160 IISHLACADDPSSH 173
           +++H   + D  + 
Sbjct: 152 VMTHAGSSYDLDTP 165


>gi|159901911|gb|ABX10644.1| alanine racemase [uncultured planctomycete 3FN]
          Length = 363

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 39/191 (20%)

Query: 9   LKIDLTALKNNWHSM--------NALSGNART-----AAVVKDNAYGLGCEKIAPALYNA 55
           L IDL  L  N  +M             + +       A           ++IA      
Sbjct: 15  LCIDLNQLDANIKTMADFIISRGKQWRPHEKCHKTPAIA----------LKQIAAGAI-- 62

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLY---GIHPGQ--EKIIFDTNLIPVISSVPQLT 110
           GV       V E   +        I +     G    +    +   T++I       Q+ 
Sbjct: 63  GVTC---AKVSEAEVMAAAGIH-DILIANMIVGTPKWERVAALCRTTDVIIACDHFAQVE 118

Query: 111 FYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLII---SHLA 165
             + +    GV+    ++VD G NR+G     +  +   +       QL+ I+    HL 
Sbjct: 119 PLAAICRRNGVTCRVIVEVDIGLNRVGTRPGVDTTELARSIHALDGLQLAGIMGYEGHLL 178

Query: 166 CADDPSSHVNS 176
              D       
Sbjct: 179 TIADRDEKRTK 189


>gi|330819823|ref|YP_004348685.1| hypothetical protein bgla_2g07000 [Burkholderia gladioli BSR3]
 gi|327371818|gb|AEA63173.1| hypothetical protein bgla_2g07000 [Burkholderia gladioli BSR3]
          Length = 376

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH---PGQEKIIFD-TNLIP 101
           E +  A   AG +   V++++E  +         ++ +  +    P    +I    +L  
Sbjct: 46  EPVVRAQLAAGARGITVSTLKEAEQFFAQGIDDIVYAVGMVPGKLPQALALIRRGCDLKL 105

Query: 102 VISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSL 159
           V  S+      +      G+S    +++D   +R GL+   E L     +  +   +L  
Sbjct: 106 VADSLVSAKAIAAFGREQGLSFEVWVEIDVDGHRSGLAPADERLIEVGRALVEGGMKLGG 165

Query: 160 IISHLACADDPSSHVNSVQLERFRTL 185
           +++H   + D   H + V++      
Sbjct: 166 VLAHAGSSYDYHRHEDLVRIAEQERA 191


>gi|253582195|ref|ZP_04859418.1| serine racemase [Fusobacterium varium ATCC 27725]
 gi|251835734|gb|EES64272.1| serine racemase [Fusobacterium varium ATCC 27725]
          Length = 369

 Score = 47.3 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 17/144 (11%)

Query: 29  NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88
                 ++K         ++      AG       +++E         +  I      +P
Sbjct: 33  GKELWPMIKT----HKSMELLKMQIEAGATGALCGTLDEAEACCKIGLKK-IM---YAYP 84

Query: 89  GQEKIIFDTNLIPV--------ISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSL 139
              K   +  +           I ++      +   ++      Y + VD+G +R GL +
Sbjct: 85  VASKESIERVIELTKKSDFIIRIDNLEAAKMINDMAVAADTVVSYTIIVDSGLHRFGLPV 144

Query: 140 QEALDFTHNSFNKKLGQLSLIISH 163
            + ++F       K  +L  I +H
Sbjct: 145 NKIVEFADKLKTMKGLKLRGISTH 168


>gi|306844788|ref|ZP_07477373.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|306274960|gb|EFM56730.1| conserved hypothetical protein [Brucella sp. BO1]
          Length = 226

 Score = 47.3 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 21/194 (10%)

Query: 45  CEKIAPA--------LYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEK 92
              ++            +AG + F    V+E       LR       + ++  +   +  
Sbjct: 31  LVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWPALREAWAGIELHLIGPLQSNKAA 90

Query: 93  IIFDT-NLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
                 ++I  +         + ++   G S    +QV+TG      G+  QEA+ F   
Sbjct: 91  DAIALFDVIETVDREKIAAALATEIRKQGKSPKLYVQVNTGLEPQKAGIPPQEAVAFVER 150

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY 208
              +    +  ++      ++P  H           L       + S+  S        +
Sbjct: 151 CRKEHGLVIEGLMCIPPAGENPGPHF-----ALLEKLAREAHVEKLSMGMSGDYETAIGF 205

Query: 209 HFQLTRPGISLYGG 222
                R G +++GG
Sbjct: 206 GATSVRVGSAIFGG 219


>gi|266619447|ref|ZP_06112382.1| alanine racemase domain protein [Clostridium hathewayi DSM 13479]
 gi|288869010|gb|EFD01309.1| alanine racemase domain protein [Clostridium hathewayi DSM 13479]
          Length = 371

 Score = 47.3 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 26/130 (20%)

Query: 43  LGCEKI-------APALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF 95
            G   I       A  + + G  D F+                   ++ G    +   + 
Sbjct: 58  HGAAGITCAKVSEAEVMADGGADDIFIAYP----------------MVGGFRIKRAVALA 101

Query: 96  D--TNLIPVISSVP-QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
                LI  + S+   +       + G++    L+VDTG  R G+   +A +        
Sbjct: 102 RRLKRLILAVDSMECAVPLNEAAKAAGITLEVRLEVDTGAKRTGVQRTKAAELAKEVHQL 161

Query: 153 KLGQLSLIIS 162
               L+ I +
Sbjct: 162 SNLNLTGIYT 171


>gi|124009568|ref|ZP_01694242.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123984807|gb|EAY24782.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 303

 Score = 47.3 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 83/246 (33%), Gaps = 44/246 (17%)

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
            +      +H   + ++ G  R G+  +E +DF    F     ++  + ++L C      
Sbjct: 55  EEAQRQNKTHRVVIMLELGDLREGVMREEIIDFYEKIFQLPNIKVVGLGTNLNCLHGVMP 114

Query: 173 HVNSV-QLERFRTLISHYKGIEASLASSSGI------LLGPNY--HFQLTRPGISLYGGT 223
             + + QL  ++ +I      +     S+G       LL           R G +L+ G 
Sbjct: 115 SEDKLIQLSLYKQIIELKFKRKIPFI-SAGTTVTLPLLLHKQLPDGVNHFRLGEALFWGN 173

Query: 224 DKINKSHPMQT---VVTAEARIILIRK---ALAGELVSYGGQKKLT-------RDSLIAV 270
           +  + S        V+   A II + +     AG L      +          R +   +
Sbjct: 174 NLFDSSIIEGMETDVLELFAEIIEVNEKPVVPAGVLAENPSGEVFDVSEEDFGRTTFRGI 233

Query: 271 AAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI-KGYMVPILGKITMDMTMFDITD-SLSI 328
             +G  D                  +     I +   + ++G  + DM + D+ D   + 
Sbjct: 234 LDVGLLD------------------INPDFLIPQDKDLEVVGA-SSDMLILDLKDNGKNY 274

Query: 329 EVGDYI 334
           +VGD +
Sbjct: 275 KVGDLV 280


>gi|167381023|ref|XP_001735540.1| proline synthetase associated protein [Entamoeba dispar SAW760]
 gi|165902419|gb|EDR28257.1| proline synthetase associated protein, putative [Entamoeba dispar
           SAW760]
          Length = 228

 Score = 47.0 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 3/128 (2%)

Query: 100 IPVISSVPQLTFYSKL-MSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQ 156
           I  I S+      +K  ++        +Q+++     + G+S++EAL+            
Sbjct: 97  IQTIHSLEIAEKLNKACINANKVIDVMVQINSSGEEQKGGVSVEEALNVVKEVMKYSNLH 156

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPG 216
              I++     D   +     QL        H + IE S+  SS   L       + R G
Sbjct: 157 FIGIMTIGMVGDSKKNFTTMKQLADIICSQEHLESIEISMGMSSDYELAIELGATMVRVG 216

Query: 217 ISLYGGTD 224
            +L+G  D
Sbjct: 217 TALFGARD 224


>gi|227432611|ref|ZP_03914589.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
          cremoris ATCC 19254]
 gi|227351647|gb|EEJ41895.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
          cremoris ATCC 19254]
          Length = 50

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 1  MHSNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLG 44
          M+ N   R   +++  +A+ +N   +   +      AV+K NA+  G
Sbjct: 1  MNYNAPHRHAVIELSQSAVVHNLKVIKENTHAKEIMAVLKANAFSHG 47


>gi|315426064|dbj|BAJ47711.1| alanine racemase domain protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 366

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 25/167 (14%)

Query: 9   LKIDLTALKNNWHSM--------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +D+  LK N   M          L  + +T              +IA     AG    
Sbjct: 17  LIVDVKVLKRNITEMADFARSLGKKLRPHVKT----------HKTPEIAWMQMEAGADGI 66

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGI-----HPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
            V  + E   +        I V   +          K+     L   +  V  ++   + 
Sbjct: 67  CVQKLGEAEVMAEAGLD-DILVSNEVVGVQKMHRLVKLAEKVKLSVAVDDVENVSELGRF 125

Query: 116 -MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
               GV     + VD G +R G+  ++A          +   L  ++
Sbjct: 126 CRENGVEVGVYVDVDCGMHRTGVPPEKAWLLAEKVTRTEGVYLVGLM 172


>gi|256061832|ref|ZP_05451967.1| hypothetical protein Bneo5_15933 [Brucella neotomae 5K33]
 gi|261325836|ref|ZP_05965033.1| alanine racemase domain-containing protein [Brucella neotomae 5K33]
 gi|261301816|gb|EEY05313.1| alanine racemase domain-containing protein [Brucella neotomae 5K33]
          Length = 226

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 21/194 (10%)

Query: 45  CEKIAPA--------LYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEK 92
              ++            +AG + F    V+E       LR       + ++  +   +  
Sbjct: 31  LVAVSKTFDTHAIRPALDAGQRVFGENRVQEAQGKWPALREAWASIELHLIGPLQSNKAA 90

Query: 93  IIFDT-NLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
                 ++I  +         + ++   G S    +QV+TG      G+  QEA+ F   
Sbjct: 91  DAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQVNTGLEPQKAGIPPQEAVAFVER 150

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY 208
              +    +  ++      ++P  H           L       + S+  S        +
Sbjct: 151 CRKEHGLVIEGLMCIPPAGENPGPHF-----ALLEKLAREAHVEKLSMGMSGDYETAIGF 205

Query: 209 HFQLTRPGISLYGG 222
                R G +++GG
Sbjct: 206 GATSVRVGAAIFGG 219


>gi|225628362|ref|ZP_03786396.1| conserved hypothetical protein [Brucella ceti str. Cudo]
 gi|254700452|ref|ZP_05162280.1| hypothetical protein Bsuib55_06309 [Brucella suis bv. 5 str. 513]
 gi|254708339|ref|ZP_05170167.1| hypothetical protein BpinM_15650 [Brucella pinnipedialis
           M163/99/10]
 gi|254708808|ref|ZP_05170619.1| hypothetical protein BpinB_00826 [Brucella pinnipedialis B2/94]
 gi|254714650|ref|ZP_05176461.1| hypothetical protein BcetM6_15197 [Brucella ceti M644/93/1]
 gi|254717548|ref|ZP_05179359.1| hypothetical protein BcetM_14326 [Brucella ceti M13/05/1]
 gi|256030334|ref|ZP_05443948.1| hypothetical protein BpinM2_06746 [Brucella pinnipedialis
           M292/94/1]
 gi|256160505|ref|ZP_05458194.1| hypothetical protein BcetM4_16004 [Brucella ceti M490/95/1]
 gi|256255711|ref|ZP_05461247.1| hypothetical protein BcetB_15833 [Brucella ceti B1/94]
 gi|256370212|ref|YP_003107723.1| alanine racemase [Brucella microti CCM 4915]
 gi|260168008|ref|ZP_05754819.1| alanine racemase [Brucella sp. F5/99]
 gi|261219382|ref|ZP_05933663.1| alanine racemase domain-containing protein [Brucella ceti M13/05/1]
 gi|261222922|ref|ZP_05937203.1| alanine racemase domain-containing protein [Brucella ceti B1/94]
 gi|261315839|ref|ZP_05955036.1| alanine racemase domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261316301|ref|ZP_05955498.1| alanine racemase domain-containing protein [Brucella pinnipedialis
           B2/94]
 gi|261322444|ref|ZP_05961641.1| alanine racemase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261750953|ref|ZP_05994662.1| alanine racemase domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|261757453|ref|ZP_06001162.1| alanine racemase domain-containing protein [Brucella sp. F5/99]
 gi|265987368|ref|ZP_06099925.1| alanine racemase domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|265998881|ref|ZP_06111438.1| alanine racemase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|294851047|ref|ZP_06791723.1| YggS family pyridoxal phosphate enzyme [Brucella sp. NVSL 07-0026]
 gi|225616208|gb|EEH13256.1| conserved hypothetical protein [Brucella ceti str. Cudo]
 gi|256000375|gb|ACU48774.1| alanine racemase [Brucella microti CCM 4915]
 gi|260921506|gb|EEX88159.1| alanine racemase domain-containing protein [Brucella ceti B1/94]
 gi|260924471|gb|EEX91039.1| alanine racemase domain-containing protein [Brucella ceti M13/05/1]
 gi|261295134|gb|EEX98630.1| alanine racemase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261295524|gb|EEX99020.1| alanine racemase domain-containing protein [Brucella pinnipedialis
           B2/94]
 gi|261304865|gb|EEY08362.1| alanine racemase domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261737437|gb|EEY25433.1| alanine racemase domain-containing protein [Brucella sp. F5/99]
 gi|261740706|gb|EEY28632.1| alanine racemase domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|262553570|gb|EEZ09339.1| alanine racemase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|264659565|gb|EEZ29826.1| alanine racemase domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|294821690|gb|EFG38686.1| YggS family pyridoxal phosphate enzyme [Brucella sp. NVSL 07-0026]
          Length = 226

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 21/194 (10%)

Query: 45  CEKIAPA--------LYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEK 92
              ++            +AG + F    V+E       LR       + ++  +   +  
Sbjct: 31  LVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWPALREAWASIELHLIGPLQSNKAA 90

Query: 93  IIFDT-NLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
                 ++I  +         + ++   G S    +QV+TG      G+  QEA+ F   
Sbjct: 91  DAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQVNTGLEPQKAGIPPQEAVAFVER 150

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY 208
              +    +  ++      ++P  H           L       + S+  S        +
Sbjct: 151 CRKEHGLVIEGLMCIPPAGENPGPHF-----ALLEKLAREAHVEKLSMGMSGDYETAIGF 205

Query: 209 HFQLTRPGISLYGG 222
                R G +++GG
Sbjct: 206 GATSVRVGAAIFGG 219


>gi|91778101|ref|YP_553309.1| metal-activated pyridoxal protein [Burkholderia xenovorans LB400]
 gi|91690761|gb|ABE33959.1| Metal-activated pyridoxal enzyme [Burkholderia xenovorans LB400]
          Length = 379

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 51/149 (34%), Gaps = 12/149 (8%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH--PGQEKIIFDT-----N 98
             +  A   AG +   V++++E         +    +LY +   P +            +
Sbjct: 46  IDVVRAQIAAGARGITVSTLKEAEAFFAAGVED---ILYAVSMAPSKLPRALALRRQGCD 102

Query: 99  LIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQ 156
           L  V+ +       +      G +    ++VDT  +R G++ ++  L       ++   +
Sbjct: 103 LKLVVDNPNAAAAIAAFSDQHGQTFEVCIEVDTDGHRSGITPEQDTLLEVGRILHENGVK 162

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTL 185
           +  +++H   + +  +      L      
Sbjct: 163 VGGVMTHAGSSYELDTPEALAALAEQERA 191


>gi|304317133|ref|YP_003852278.1| alanine racemase domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778635|gb|ADL69194.1| alanine racemase domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 393

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 99/335 (29%), Gaps = 58/335 (17%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEK------------IAPALYNAGVQD 59
           DL ++  N   +   +         K+N                    +A  +  AG++ 
Sbjct: 34  DLDSIYENAKLLKEAAN--------KNN-----IILYYMTKQFGRNPIVAKIIEEAGIEK 80

Query: 60  FFVTS-VEEGVKLRLYTPQ-ARI--FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
             V   ++E   L     +   I   V    +     +    ++I   S           
Sbjct: 81  -AVAVDIDEAKILYKNGLKIGHIGHLVQIPKNDIMASLKMHPDVITCFSYDKAAELSDIA 139

Query: 116 MSCGVSHPYALQVDTGFNRL------GLSLQEALDFTHNSFNKKLGQLSLIISHLAC--- 166
              G+     L+V    + +      G+ L++      N    K   +  I +   C   
Sbjct: 140 EKLGIRQNILLRVIDDKDDIYPGQYGGIKLKDLRKIASNILRLKNIDIVGI-TSFPCFLY 198

Query: 167 ---ADDPSSHVNSVQLERFRTLIS-------HYKGIEASLASSSGILLGPNYHFQLTRPG 216
              +    +  N+  L R + ++S          G   +  SS  IL    Y      PG
Sbjct: 199 DYNSRKIKATHNAETLLRAKNILSEMGINVLQVNGPSVTCCSSMPIL--KKYGITHGEPG 256

Query: 217 ISLYGGTD--KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
            +L G T     N + P +  +   + I  I      +   +GG          A+ + G
Sbjct: 257 HALTGTTPIHAYNNNQPEKPALVYVSEISHI---SGNKAYCFGGGFYARSKMKHALVS-G 312

Query: 275 YADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309
             D        ++   + S+   G   + G  V +
Sbjct: 313 NIDDILEKRYDVEELPAESIDYYGTILLNGGKVNV 347


>gi|306841587|ref|ZP_07474284.1| conserved hypothetical protein [Brucella sp. BO2]
 gi|306288333|gb|EFM59696.1| conserved hypothetical protein [Brucella sp. BO2]
          Length = 226

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 60/194 (30%), Gaps = 21/194 (10%)

Query: 45  CEKIAPA--------LYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEK 92
              ++            +AG + F    V+E       LR       + ++  +   +  
Sbjct: 31  LVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWPALREAWAGIELHLIGPLQSNKAA 90

Query: 93  IIFDT-NLIPVISSVP-QLTFYSKLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
                 ++I  +          S++   G S    +QV+TG      G+  QEA+ F   
Sbjct: 91  DAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQVNTGLEPQKAGIPPQEAVAFVER 150

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY 208
              +    +  ++      ++P  H           L       + S+  S        +
Sbjct: 151 CRKEHGLVIEGLMCIPPAGENPGPHF-----ALLEKLAREAHVEKLSMGMSGDYETAIGF 205

Query: 209 HFQLTRPGISLYGG 222
                R G +++GG
Sbjct: 206 GATSVRVGSAIFGG 219


>gi|315425297|dbj|BAJ46964.1| alanine racemase domain protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 360

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 25/167 (14%)

Query: 9   LKIDLTALKNNWHSM--------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +D+  LK N   M          L  + +T              +IA     AG    
Sbjct: 11  LIVDVKVLKRNITEMADFARSLGKKLRPHVKT----------HKTPEIAWMQMEAGADGI 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGI-----HPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
            V  + E   +        I V   +          K+     L   +  V  ++   + 
Sbjct: 61  CVQKLGEAEVMAEAGLD-DILVSNEVVGVQKMHRLVKLAEKVKLSVAVDDVENVSELGRF 119

Query: 116 -MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
               GV     + VD G +R G+  ++A          +   L  ++
Sbjct: 120 CRENGVEVGVYVDVDCGMHRTGVPPEKAWLLAEKVTRTEGVYLVGLM 166


>gi|52842730|ref|YP_096529.1| metal-activated pyridoxal enzyme [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629841|gb|AAU28582.1| metal-activated pyridoxal enzyme [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 384

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 34/171 (19%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L ID   LK N   M             + +T            C +IA      G    
Sbjct: 26  LVIDYEKLKYNLKVMQQHGFEWGIGIRPHCKT----------HKCTQIARLQLEYGAIGI 75

Query: 61  FVTSVEEGVKLR-----LYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLT 110
               + E   L           + I     +   +   +F+      +L+ V+     + 
Sbjct: 76  SAAKLSEAEVLVSKQITNVLITSPI-----VSEAKYSRLFNCLKSAPDLMLVVDGKDNIR 130

Query: 111 FYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
             ++L  S        L +D+G  R G++ + AL++ H   +    +L  I
Sbjct: 131 MLNELGKSLNQPVYVLLDIDSGIGRTGINPEVALEYGHFINSMNWLKLKGI 181


>gi|62180930|ref|YP_217347.1| hypothetical protein SC2360 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128563|gb|AAX66266.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715409|gb|EFZ06980.1| Putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 367

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 114/364 (31%), Gaps = 64/364 (17%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N  +  AL  ++     AV K  D     GC + A A++N G+     + 
Sbjct: 6   LEINLRKLEENARTEKALLASSGIDVMAVNKVFD-----GCVETAQAVFNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G +H  
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQV 119

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L VD G  R G+   E    L+           +L  + ++  C       V +   E 
Sbjct: 120 LLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNCYGTVLPTVKNG--ED 177

Query: 182 FRTLISHY--------KGIEASLASSSGIL---LGPNYHFQLTRPGISLYGG-------- 222
           F  L +          + + A   +S  +L   + P     L   G+  +G         
Sbjct: 178 FLALAARLEADSGIPVRRLSAGNCTSYHLLDKGIWPQGLNHLRIGGLHEFGIEYVDMKYL 237

Query: 223 TDKINKSHPMQTVVT----AEARIILIR---KALAGELVS----YGGQKKLTRDSLIAVA 271
            +  + + P+    +     EA II +        GEL                   A+ 
Sbjct: 238 NEFHHSAKPVDKACSDMYILEAEIIELNSKPTVPVGELGVDAFLQSKTFVDRGIRRRALL 297

Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEV 330
           A G+ D                V       I G         T D T+ DI D    ++V
Sbjct: 298 AFGHQD----------VPSDNCVPCDDAITILGQ--------TSDHTLVDIEDCRQSLKV 339

Query: 331 GDYI 334
           GD +
Sbjct: 340 GDVV 343


>gi|323137154|ref|ZP_08072233.1| alanine racemase domain protein [Methylocystis sp. ATCC 49242]
 gi|322397512|gb|EFY00035.1| alanine racemase domain protein [Methylocystis sp. ATCC 49242]
          Length = 223

 Score = 46.6 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 18/190 (9%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLI 100
            E + P L +AG + F    V+E +     LR   P   + ++  +   + +   +T   
Sbjct: 39  AEDVVP-LLDAGHRVFGENRVQEAMGKWPALREKYPDIELHLIGPLQSNKTQEAVET--F 95

Query: 101 PVISSVPQLTFYSKL----MSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKL 154
            VI SV +      L       G      +QV+TG      G+  +EA  F      K  
Sbjct: 96  DVIQSVDREKIAKALSEEMAKTGRRPRLFVQVNTGAEPQKAGVLPEEADAFIAACREKYG 155

Query: 155 GQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTR 214
            +++ ++      +  S H           + +     E S+  SS   L         R
Sbjct: 156 LEIAGLMCVPPVGEQASPHF-----ALLADIAARNGLRELSMGMSSDYELAIQLGATYVR 210

Query: 215 PGISLYGGTD 224
            G ++ G  D
Sbjct: 211 VGSAIMGARD 220


>gi|160896517|ref|YP_001562099.1| alanine racemase domain-containing protein [Delftia acidovorans
           SPH-1]
 gi|160362101|gb|ABX33714.1| alanine racemase domain protein [Delftia acidovorans SPH-1]
          Length = 241

 Score = 46.6 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 28/186 (15%)

Query: 25  ALSGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV----KLRLYTP- 76
             SG+ +  +V K    +A              AG + F    ++EGV     +R     
Sbjct: 24  RASGSVQLLSVSKTFGADA--------VREAVLAGERSFGENYIQEGVDKIAAVRAMGLP 75

Query: 77  ---QARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGV---SHPYALQVD 129
                +   +  I   + +++ +  +    +  +      S     G+        L VD
Sbjct: 76  GGETLQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAERLSAQRPEGLAPLQVCIQLNVD 135

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
            G  + G++ Q+AL+            L  ++S         +     Q E      + +
Sbjct: 136 GGETKAGVAPQQALELAAAIVQLPRLALRGVMS-----IPDDAPGFEAQREVHARATTVF 190

Query: 190 KGIEAS 195
           + I AS
Sbjct: 191 EQIRAS 196


>gi|256752935|ref|ZP_05493765.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748180|gb|EEU61254.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 167

 Score = 46.6 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 16/165 (9%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVT 63
           L+I+L  L+ N  ++  L    N +   V K            ++A  +   GV+    +
Sbjct: 5   LRINLVKLRENTQTIVNLCEKKNIKVVGVTKVFCA------IPEVAQTMVKGGVEILGDS 58

Query: 64  SVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121
            +     L+          +L      + + +     I + S +  +   S+        
Sbjct: 59  RI---KNLKKLQHIPVPKMLLRIPMKSEVEEVIKYADISLNSEIDTIKSLSEEAKKQRKI 115

Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
           H   L VD G  R G+  ++ +         +  +L  I ++L C
Sbjct: 116 HEIILMVDLGDLREGVLKEDVIPIVEQIVKLEGIRLRGIGTNLTC 160


>gi|229591485|ref|YP_002873604.1| putative metal-activated pyridoxal enzyme [Pseudomonas fluorescens
           SBW25]
 gi|229363351|emb|CAY50481.1| putative metal-activated pyridoxal enzyme [Pseudomonas fluorescens
           SBW25]
          Length = 378

 Score = 46.6 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 58/197 (29%), Gaps = 38/197 (19%)

Query: 11  IDLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ID+  +++N   M                 ++   V+              A   AG   
Sbjct: 15  IDIPRMQHNIQRMQQRMNTLGVRLRPHIKTSKCLPVI-------------QAQLAAGASG 61

Query: 60  FFVTSVEEGVKLRLYTPQARIF-VLYGIH--PGQEKIIFDT-----NLIPVISSVPQLTF 111
             V++++E      +     I  V Y +   PG+            NL  +  SV     
Sbjct: 62  VTVSTLKEA----QHCFSQGILDVFYAVAVAPGKLPQALALRRQGCNLSLLTDSVAGAQA 117

Query: 112 YSKLMSC-GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADD 169
                          +++D   +R GL+ + EAL       +     L  +++H   + +
Sbjct: 118 LVAFAQQHDERLDVWIEIDCDGHRSGLAAEDEALLDVARILSDGGMHLRGVMTHAGSSYE 177

Query: 170 PSSHVNSVQLERFRTLI 186
             +      L      +
Sbjct: 178 LDTPEALQVLAEQERAL 194


>gi|282881806|ref|ZP_06290462.1| alanine racemase domain-containing protein [Peptoniphilus
           lacrimalis 315-B]
 gi|281298342|gb|EFA90782.1| alanine racemase domain-containing protein [Peptoniphilus
           lacrimalis 315-B]
          Length = 370

 Score = 46.6 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 116/356 (32%), Gaps = 63/356 (17%)

Query: 12  DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +L  L++N  ++       N     V+K      G  +IA   Y+  V     + +E+  
Sbjct: 21  NLNKLRDNLAALTERCQIYNVSIVGVIKGF---NGIAEIAKV-YDGKVDYIASSRLEQLN 76

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQ 127
            ++    Q  +  +    P +   +     I  + S P +           G+ H   L 
Sbjct: 77  VIKELNLQTPLMCIRISMPSEVDELVRICQI-SLQSDPSVIKLINEAAKKQGIIHKIILM 135

Query: 128 VDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            D G  R G   ++    +            L+ + ++L C     +    +Q      L
Sbjct: 136 ADIGDLREGFWNKDHIFEEALKIENEYDNLYLAGVGTNLGCYGSIVATPEKLQ-----EL 190

Query: 186 ISHYKGIEASL-----------ASSSGILLG---PNYHFQLTRPGISLYG-GTDKINKSH 230
           +     IE  +           +SS   LL    P    +L      L G GT  ++  +
Sbjct: 191 VDIKDEIEKRINRKIDIVSGGGSSSLLTLLDKKIPKGINELRLGESVLMGLGTWGLDLDY 250

Query: 231 PMQTVVTAEARIILIRKALA-----------GELVSYGGQKKLTRDSLIAVAAIGYADGY 279
               V     +++ +    +           G +V Y      TR    A+ +IG     
Sbjct: 251 LHDDVFELWTQVVEVETKPSFPVGQRGVDAFGNVVEYEDIGIHTR----AIVSIG----- 301

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYI 334
              L   +   +   F           + +LG  + D T+ D+T++    +VGD I
Sbjct: 302 --KLDYGNDPFALKTFDKN--------IKVLGA-SSDHTILDVTNAKEPTKVGDII 346


>gi|169628346|ref|YP_001701995.1| hypothetical protein MAB_1253c [Mycobacterium abscessus ATCC 19977]
 gi|169240313|emb|CAM61341.1| Conserved hypothetical protein (alanine racemase?) [Mycobacterium
           abscessus]
          Length = 360

 Score = 46.6 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 25/177 (14%)

Query: 11  IDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +DL  +  N   +          L  +A++            C +IA    ++G     V
Sbjct: 20  VDLAVMDRNIERLAGRLRGTGIRLRPHAKS----------HKCIEIARRQIDSGAIGLTV 69

Query: 63  TSVEEGVKLRLYT-PQARIFVLYGIHPGQEK----IIFDTNLIPVISSVPQLTFYSKLMS 117
            +V E             I     +   + +    +     L   + S       ++ + 
Sbjct: 70  ATVGEAEVFAEAGFIDLFIAYPLWVTAQKARRLRQVASRAALRVAVDSAAGAQQLAEHLG 129

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
             +     ++VD+G +R G++  +A      + +  L  +  I +       P    
Sbjct: 130 D-LPITVVIEVDSGHHRTGVAPDQAGPVAAAARSAGL-NVVGIFTFPGHGYTPGHRA 184


>gi|242239592|ref|YP_002987773.1| alanine racemase domain protein [Dickeya dadantii Ech703]
 gi|242131649|gb|ACS85951.1| alanine racemase domain protein [Dickeya dadantii Ech703]
          Length = 219

 Score = 46.6 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 69/180 (38%), Gaps = 17/180 (9%)

Query: 52  LYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
           L +AG + F  + V+E +     LR       +  + G+   +   I +     VI SV 
Sbjct: 44  LIHAGHRCFGESRVDEAINKWDALRNQYEDLELHFIGGLQSRKVAKIVE--FFDVIQSVD 101

Query: 108 QLTFYSKLMSC----GVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLII 161
           + +   K+ SC    G +    +Q++ G      G+S+ +  D   +        +  ++
Sbjct: 102 RASLADKISSCAKSLGKTQKIFIQINIGDEPQKSGVSVNDFDDVFAHVSRLDNICIEGVM 161

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
                  D S + + +       +   Y   + S+  S+   L   Y+  + R G +++G
Sbjct: 162 CIPPNEKDVSVYFSQM-----SAITEKYHFPQLSMGMSNDYKLALCYNSTMVRVGSAIFG 216


>gi|94985418|ref|YP_604782.1| carboxynorspermidine decarboxylase [Deinococcus geothermalis DSM
           11300]
 gi|94555699|gb|ABF45613.1| carboxynorspermidine decarboxylase [Deinococcus geothermalis DSM
           11300]
          Length = 408

 Score = 46.6 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 21/197 (10%)

Query: 12  DLTALKNNWHSMN--ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           D + L+ N   ++    +  A+     K  A       + P L   G+     +S+ E +
Sbjct: 30  DESRLRRNLALISAVQRASGAQIIVAFKGFA----MWSVFPLLREYGITGATASSLNEAI 85

Query: 70  KLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             R    Q  + V    +  ++   I D     V +S  Q   +   +    +   AL V
Sbjct: 86  LAREE-LQGEVHVYAPAYSEEDFPRILDLADHIVFNSFAQWERFRPQVEAARAAGKALHV 144

Query: 129 DTGFNRLGLSLQEA----------LDFTHNSFNKKLGQ-LSLIISHLACADDPSS-HVNS 176
               N     ++            L  T   F  +L   +  +  H  C  D  +     
Sbjct: 145 GLRINPEYAEVETDLYNPAGPFSRLGVTRREFRPELLDGIDGLHFHTLCEKDSDTLERTL 204

Query: 177 VQLER-FRTLISHYKGI 192
             +ER F   +   + +
Sbjct: 205 EVVERNFGEFLPRMRWV 221


>gi|289810431|ref|ZP_06541060.1| hypothetical protein Salmonellaentericaenterica_41087 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 169

 Score = 46.6 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 13/165 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N  +  AL  ++     AV K  D     GC + A A+ N G+     + 
Sbjct: 6   LEINLRKLEENARTEKALLASSGIDVMAVNKVFD-----GCVETAQAVLNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G +H  
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQV 119

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLAC 166
            L VD G  R G+   E    L+           +L  + ++  C
Sbjct: 120 LLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNC 164


>gi|16761283|ref|NP_456900.1| hypothetical protein STY2588 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141021|ref|NP_804363.1| hypothetical protein t0506 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161246|ref|ZP_03346956.1| hypothetical protein Salmoneentericaenterica_14910 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213417159|ref|ZP_03350303.1| hypothetical protein Salmonentericaenterica_04172 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213426986|ref|ZP_03359736.1| hypothetical protein SentesTyphi_16055 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649624|ref|ZP_03379677.1| hypothetical protein SentesTy_21405 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289827478|ref|ZP_06546090.1| hypothetical protein Salmonellentericaenterica_17177 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25380535|pir||AD0801 conserved hypothetical protein STY2588 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503582|emb|CAD07590.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136646|gb|AAO68212.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 367

 Score = 46.6 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 13/165 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N  +  AL  ++     AV K  D     GC + A A+ N G+     + 
Sbjct: 6   LEINLRKLEENARTEKALLASSGIDVMAVNKVFD-----GCVETAQAVLNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G +H  
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQV 119

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLAC 166
            L VD G  R G+   E    L+           +L  + ++  C
Sbjct: 120 LLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNC 164


>gi|309388498|gb|ADO76378.1| alanine racemase domain protein [Halanaerobium praevalens DSM 2228]
          Length = 356

 Score = 46.6 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 119/332 (35%), Gaps = 59/332 (17%)

Query: 34  AVVKDNAYGL-GCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
           AVVK    GL G  +I  A   A ++    + ++  +K R    Q  I +L      + +
Sbjct: 33  AVVK----GLAGDVEIFKAYQKADIKSIADSRLKNIIKYRKAGYQGEILMLRIPMLSEIE 88

Query: 93  IIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
            +       ++S     +  SK            + VD G  R G+  +  L       +
Sbjct: 89  KMIPYVDSVLVSEAKTASLISKFAVKQKKVIDLIIMVDLGDRREGILAKNLLALAAKIKS 148

Query: 152 KKLGQLSLIISHLAC--ADDPSSHVNSVQLERFRTLISHYKGIEASLAS------SSG-- 201
                L  I ++L C     P            + LI+  K +E SL +      S+G  
Sbjct: 149 LSAVNLKGIGTNLGCFAGIIPDDENT-------KKLIALKKELENSL-NFKLDILSAGNT 200

Query: 202 ----ILLGPNYHFQLT--RPGISLYGGTDKINKS---HPMQTVVTAEARIILIR---KAL 249
               ++  P    ++T  R G  +  GTD IN+             +A I+ ++    + 
Sbjct: 201 ATLKLIKEPELSSEITNLRIGEGILIGTDIINQDLLQDYNHYNFRLQAEIVELKAKPSSP 260

Query: 250 AGE-LVSYGGQKKLTRDSLI---AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
            GE      G+ +L  D  +   A+ A+G  D   +   GL  +      LG        
Sbjct: 261 EGEIAFGGQGRGQLIEDKGLRKRAILAVGKQD---IDYQGLYPKQKGVQVLGA------- 310

Query: 306 MVPILGKITMDMTMFDITD-SLSIEVGDYIQI 336
                   + D  + DITD  L +EVGD ++ 
Sbjct: 311 --------SSDHLITDITDAELELEVGDILEF 334


>gi|62290673|ref|YP_222466.1| hypothetical protein BruAb1_1788 [Brucella abortus bv. 1 str.
           9-941]
 gi|82700588|ref|YP_415162.1| hypothetical protein BAB1_1816 [Brucella melitensis biovar Abortus
           2308]
 gi|189024885|ref|YP_001935653.1| hypothetical protein BAbS19_I16970 [Brucella abortus S19]
 gi|237816174|ref|ZP_04595169.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|254689961|ref|ZP_05153215.1| hypothetical protein Babob68_07289 [Brucella abortus bv. 6 str.
           870]
 gi|254698112|ref|ZP_05159940.1| hypothetical protein Babob28_10483 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730996|ref|ZP_05189574.1| hypothetical protein Babob42_07322 [Brucella abortus bv. 4 str.
           292]
 gi|256258216|ref|ZP_05463752.1| hypothetical protein Babob9C_12896 [Brucella abortus bv. 9 str.
           C68]
 gi|260547091|ref|ZP_05822829.1| alanine racemase domain-containing protein [Brucella abortus NCTC
           8038]
 gi|260755496|ref|ZP_05867844.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
           str. 870]
 gi|260758719|ref|ZP_05871067.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
           str. 292]
 gi|260762553|ref|ZP_05874890.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884517|ref|ZP_05896131.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
           str. C68]
 gi|297249065|ref|ZP_06932773.1| YggS family pyridoxal phosphate enzyme [Brucella abortus bv. 5 str.
           B3196]
 gi|62196805|gb|AAX75105.1| conserved hypothetical protein TIGR00044 [Brucella abortus bv. 1
           str. 9-941]
 gi|82616689|emb|CAJ11772.1| Protein of unknown function UPF0001 [Brucella melitensis biovar
           Abortus 2308]
 gi|189020457|gb|ACD73179.1| hypothetical protein BAbS19_I16970 [Brucella abortus S19]
 gi|237788636|gb|EEP62849.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|260095456|gb|EEW79334.1| alanine racemase domain-containing protein [Brucella abortus NCTC
           8038]
 gi|260669037|gb|EEX55977.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
           str. 292]
 gi|260672979|gb|EEX59800.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675604|gb|EEX62425.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
           str. 870]
 gi|260874045|gb|EEX81114.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
           str. C68]
 gi|297174198|gb|EFH33555.1| YggS family pyridoxal phosphate enzyme [Brucella abortus bv. 5 str.
           B3196]
          Length = 226

 Score = 46.2 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 21/194 (10%)

Query: 45  CEKIAPA--------LYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEK 92
              ++            +AG + F    V+E       LR       + ++  +   +  
Sbjct: 31  LVAVSKTFDAQAIRPALDAGQRVFGENRVQEARGKWPALREAWASIELHLIGPLQSNKAA 90

Query: 93  IIFDT-NLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
                 + I  +         + ++   G S    +QV+TG      G+  QEA+ F   
Sbjct: 91  DAVALFDAIETVDREKIAAALASEIRKQGKSPKLYVQVNTGLEPQKAGIPPQEAVAFVER 150

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY 208
              +    +  ++      ++P  H           L       + S+  S        +
Sbjct: 151 CRKEHGLVIEGLMCIPPAGENPGPHF-----ALLEKLAREAHVEKLSMGMSGDYETAIGF 205

Query: 209 HFQLTRPGISLYGG 222
                R G +++GG
Sbjct: 206 GATSVRVGAAIFGG 219


>gi|311107165|ref|YP_003980018.1| alanine racemase [Achromobacter xylosoxidans A8]
 gi|310761854|gb|ADP17303.1| alanine racemase, N-terminal domain protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 385

 Score = 46.2 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 54/177 (30%), Gaps = 37/177 (20%)

Query: 17  KNNWHSMNALSGNARTAAVVKDNAYGLG-----------CEKIAPALYN--AGVQDFFVT 63
             N   +NAL       A       G G              +A  L +   G     V+
Sbjct: 26  ARNIERLNAL------MA-------GHGVQLRPHLKTPKSIDVARRLMSSPQGPA--AVS 70

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKL-MS 117
           +++E  +         +    G+ P +   +        +L  V+ S+      ++    
Sbjct: 71  TLQEAEQFAAAGVT-DLLYAVGVSPAKLDRVLALRRRGVDLTVVVDSLEAARAVAQRGRE 129

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDF--THNSFNKKLGQLSLIISHLACADDPSS 172
            G + P  +++D   +R G+               ++    L  +++H   +    S
Sbjct: 130 AGDAIPALIEIDCDGHRAGVQPGNTAQLLAIARVLHEDGACLRGVMTHAGESYGCDS 186


>gi|330810386|ref|YP_004354848.1| hypothetical protein PSEBR_a3508 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378494|gb|AEA69844.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 359

 Score = 46.2 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 50/163 (30%), Gaps = 18/163 (11%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----LI 100
             +  A   AG     V++++E         +  IF    + PG+             L 
Sbjct: 29  LPVVRAQLAAGASAITVSTLKEAEHCFAEGIR-DIFYAVSMAPGKLAQALTLRRKGCRLS 87

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLS 158
            +  S+                    +++D   +R G+ +++ AL       ++   QL 
Sbjct: 88  ILTDSLAATQAIVDFGRQHDERFEVWIEIDCDGHRSGVRVEDDALVDIARRLSEGGMQLC 147

Query: 159 LIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSG 201
            +++H   + +  +             +      E  L  S+ 
Sbjct: 148 GVMTHAGSSYELDTP----------QALQALAEQERHLCVSAA 180


>gi|288574333|ref|ZP_06392690.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570074|gb|EFC91631.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 370

 Score = 46.2 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 74/216 (34%), Gaps = 40/216 (18%)

Query: 49  APALYNAGVQDFFVTS-------VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP 101
           A  +   GV D FV +       +E     RL   + ++         +  +  D     
Sbjct: 69  AEVMAEEGVDDIFVANEIVGDIKLE-----RLAEIRRKV--------RRIAVAVDHRDHI 115

Query: 102 VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLI 160
            I          +           L V+TG  R G++   EAL+   + +N     L  I
Sbjct: 116 SI-------LNGRFKDSDRPLEVLLDVNTGDPRTGVAPGPEALELARSVWNSPGLSLRGI 168

Query: 161 ISHLACADDPSSHVNSVQLER--FRTLISHYKGI--------EASLASSSGILLGPNYHF 210
            +H   + D       +++ R   + +I   K I        E S+ S+  +LLG     
Sbjct: 169 YTHDGQSYDVEGWEGVIEVNRNSQQAVIDLAKTIRDNGIFCEEVSVGSTPSLLLGEILPG 228

Query: 211 QL-TRPGISLYGGTDKIN-KSHPMQTVVTAEARIIL 244
               RPG  ++   D+ N      +  ++  A +I 
Sbjct: 229 VTEIRPGTYIFMDADQANVLGSYDRCALSVFATVIS 264


>gi|124003885|ref|ZP_01688733.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123990940|gb|EAY30407.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 372

 Score = 46.2 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 44/146 (30%), Gaps = 10/146 (6%)

Query: 43  LGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK----IIFDTN 98
                +      AG++   V+S++          Q  I + +  +  +      +  + +
Sbjct: 41  HQSVAVGKWCQEAGIEAITVSSLKMATYFAKNGWQ-DITIAFPFYAQEMAGVNKLAEEID 99

Query: 99  LIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLG 155
           L   I S   +    + +   V     +++D G +R G+  ++               + 
Sbjct: 100 LNLTIVSPESIKVLKEQLDYAVGA--YIKIDVGTHRTGIRPEDGEQIEAMIGEILRNPMV 157

Query: 156 QLSLIISHLACADDPSSHVNSVQLER 181
                ++H              Q+ +
Sbjct: 158 IFKGFMAHAGHTYGARDEAEIQQIHQ 183


>gi|238024453|ref|YP_002908685.1| hypothetical protein bglu_2g10490 [Burkholderia glumae BGR1]
 gi|237879118|gb|ACR31450.1| Hypothetical protein bglu_2g10490 [Burkholderia glumae BGR1]
          Length = 376

 Score = 46.2 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 32/181 (17%)

Query: 11  IDLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ID+  +  N   M                 ++ A VV            A     AG + 
Sbjct: 13  IDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVV-----------TAQ--LEAGARG 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSK 114
             V++++E  +      +  I    GI P +            +L  V  SV        
Sbjct: 60  ITVSTLKEAEQFFALGVR-DIVYAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVA 118

Query: 115 L-MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                G S    ++VD   +R GL  + EAL     +       L  +++H   + +  +
Sbjct: 119 FGRQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGGMHLGGVMAHAGSSYEHDT 178

Query: 173 H 173
           H
Sbjct: 179 H 179


>gi|23502661|ref|NP_698788.1| hypothetical protein BR1808 [Brucella suis 1330]
 gi|161619728|ref|YP_001593615.1| hypothetical protein BCAN_A1846 [Brucella canis ATCC 23365]
 gi|163845385|ref|YP_001623040.1| hypothetical protein BSUIS_B1285 [Brucella suis ATCC 23445]
 gi|254703574|ref|ZP_05165402.1| hypothetical protein Bsuib36_06554 [Brucella suis bv. 3 str. 686]
 gi|260568879|ref|ZP_05839347.1| alanine racemase domain-containing protein [Brucella suis bv. 4
           str. 40]
 gi|261754207|ref|ZP_05997916.1| alanine racemase domain-containing protein [Brucella suis bv. 3
           str. 686]
 gi|23348670|gb|AAN30703.1| conserved hypothetical protein TIGR00044 [Brucella suis 1330]
 gi|161336539|gb|ABX62844.1| conserved hypothetical protein [Brucella canis ATCC 23365]
 gi|163676108|gb|ABY40218.1| conserved hypothetical protein [Brucella suis ATCC 23445]
 gi|260154263|gb|EEW89345.1| alanine racemase domain-containing protein [Brucella suis bv. 4
           str. 40]
 gi|261743960|gb|EEY31886.1| alanine racemase domain-containing protein [Brucella suis bv. 3
           str. 686]
          Length = 226

 Score = 46.2 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 21/194 (10%)

Query: 45  CEKIAPA--------LYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEK 92
              ++            +AG + F    V+E       LR       + ++  +   +  
Sbjct: 31  LVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWPALREAWASIELHLIGPLQSNKVA 90

Query: 93  IIFDT-NLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
                 ++I  +         + ++   G S    +QV+TG      G+  QEA+ F   
Sbjct: 91  DAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQVNTGLEPQKAGIPPQEAVAFVER 150

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY 208
              +    +  ++      ++P  H           L       + S+  S        +
Sbjct: 151 CRKEHGLVIEGLMCIPPAGENPGPHF-----ALLEKLAREAHVEKLSMGMSGDYETAIGF 205

Query: 209 HFQLTRPGISLYGG 222
                R G +++GG
Sbjct: 206 GATSVRVGAAIFGG 219


>gi|54298526|ref|YP_124895.1| hypothetical protein lpp2590 [Legionella pneumophila str. Paris]
 gi|53752311|emb|CAH13743.1| hypothetical protein lpp2590 [Legionella pneumophila str. Paris]
          Length = 376

 Score = 46.2 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 34/171 (19%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L ID   LK N   M             + +T            C +IA      G    
Sbjct: 18  LVIDYEKLKYNLKMMQEHGFKWGIGIRPHCKT----------HKCTQIARLQLEYGAIGI 67

Query: 61  FVTSVEEGVKL-----RLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLT 110
               + E   L           + I     +   +   +F+      +L+ V+     + 
Sbjct: 68  SAAKLSEAEVLVSKQIANVLITSPI-----VSEAKHSRLFNCLKSAPDLMLVVDGKDNIR 122

Query: 111 FYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
             ++L  S        L +D+G  R G++ + AL++ H        +L  I
Sbjct: 123 MLNELGKSLNQPVYVLLDIDSGIGRTGINPEAALEYGHFINGMNWLKLKGI 173


>gi|300814860|ref|ZP_07095094.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511056|gb|EFK38322.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 370

 Score = 46.2 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 117/356 (32%), Gaps = 63/356 (17%)

Query: 12  DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
           +L  L++N  ++       N     V+K      G  +IA   Y+  V     + +E+  
Sbjct: 21  NLNKLRDNLAALTKRCQIYNVSIVGVIKGF---NGIAEIAKV-YDGKVDFIASSRLEQLN 76

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQ 127
            ++    Q  +  +    P +   +     I  + S P +           G+ H   L 
Sbjct: 77  VIKELNLQTPLMCIRISMPSEVDELVRICQI-SLQSDPSVIKLINEAAKKQGLIHKIVLM 135

Query: 128 VDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
            D G  R G   ++ L  +            L+ + ++L C     +    +Q      L
Sbjct: 136 ADIGDLREGFWNKDHLFEEALKIENEYDNLYLAGVGTNLGCYGSIVATPEKLQ-----EL 190

Query: 186 ISHYKGIEASL-----------ASSSGILLG---PNYHFQLTRPGISLYG-GTDKINKSH 230
           +     IE  +           +SS   LL    P    +L      L G GT  ++  +
Sbjct: 191 VDIKDEIEKRINRKIDIVSGGGSSSLLTLLDKKIPEGINELRLGESVLMGLGTWGLDLDY 250

Query: 231 PMQTVVTAEARIILIRKALA-----------GELVSYGGQKKLTRDSLIAVAAIGYADGY 279
               V     +++ +    +           G +V Y      TR    A+ +IG     
Sbjct: 251 LHDDVFELWTQVVEVETKPSFPVGQRGVDAFGNVVEYEDIGIHTR----AIVSIG----- 301

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYI 334
              L   +   +   F           + +LG  + D T+ D+T++    +VGD I
Sbjct: 302 --KLDYGNDPFALKAFDKN--------IKVLGA-SSDHTILDVTNAKEPTKVGDII 346


>gi|54295359|ref|YP_127774.1| hypothetical protein lpl2444 [Legionella pneumophila str. Lens]
 gi|53755191|emb|CAH16684.1| hypothetical protein lpl2444 [Legionella pneumophila str. Lens]
          Length = 376

 Score = 46.2 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 34/171 (19%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L ID   LK N   M             + +T            C +IA      G    
Sbjct: 18  LVIDYEKLKYNLKMMQQHGFKWGIGIRPHCKT----------HKCTQIARLQLEYGAIGI 67

Query: 61  FVTSVEEGVKLR-----LYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLT 110
               + E   L           + I     +   +   +F++     +L+ V+     + 
Sbjct: 68  SAAKLSEAEVLVSKQITNVLITSPI-----VSEAKYSRLFNSLKSAPDLMLVVDGKDNIR 122

Query: 111 FYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
             ++L  S        L +D+G  R G++ + AL++ H        +L  I
Sbjct: 123 MLNELGKSLNQPVYVLLDIDSGIGRTGINPEAALEYGHFINGMNWLKLKGI 173


>gi|217966665|ref|YP_002352171.1| alanine racemase domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217335764|gb|ACK41557.1| alanine racemase domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 361

 Score = 46.2 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 117/366 (31%), Gaps = 64/366 (17%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTA--AV--VKDNAYGLGCEKIAPALYNAG 56
           M+      L+I+L A+ +N   +             V  V      LG  KIA  L  AG
Sbjct: 1   MNICSPY-LEINLPAIYHNAKVIVEKGKEQGILIDGVTKVS-----LGDPKIARVLVKAG 54

Query: 57  VQDFFV--TSVEEGVKLRLYTPQARI-FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
           V  F +  + +E   +++      +   +        E+ I   ++      +       
Sbjct: 55  V--FGISDSRIESIKRMKEDGLDTQFTLIRLPCLSQVEEEIKYADVSLNSEFITLKALNE 112

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH-NSFNKKLGQLSLIISHLACADDPSS 172
                   H   + V+ G  R G+  +E L F        +  +L  I ++  C      
Sbjct: 113 AGERLKKKHKVIIMVEMGDIREGIWNKEELYFVIGEVLKMENLELWGIGTNFTCFG--GV 170

Query: 173 HVNSVQLERFRTLISHYKG------IEASLASSSGI-LLGP---NYHFQLTRPGISLYGG 222
                +   F  ++   +          S  +SS I LL            R G  +  G
Sbjct: 171 IPTEEKYISFLEIVRDLEKRFNISFPMVSGGNSSSISLLFEGKIPSGINHLRIGEGIMLG 230

Query: 223 TDKINKSHPMQTVVTAEA-------RIILIRK-------ALAGELVSYGGQKKLTRDSLI 268
                ++   + V+ A          I+ I++        +  +   +    K+      
Sbjct: 231 ----RETSYRKPVLGARTDTFKFVGEILEIKEKPSIPWGIIGEDAFGHKPSFKVRGIRKR 286

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328
           A+   G           +D E       G +         ILG  + D T+ DI+++ S+
Sbjct: 287 ALLNFG--------RQDIDPEGLIPETFGIE---------ILGATS-DYTVVDISENDSL 328

Query: 329 EVGDYI 334
           +VGD I
Sbjct: 329 KVGDSI 334


>gi|33591729|ref|NP_879373.1| putative metal-activated pyridoxal enzyme [Bordetella pertussis
           Tohama I]
 gi|33571372|emb|CAE44851.1| putative metal-activated pyridoxal enzyme [Bordetella pertussis
           Tohama I]
 gi|332381147|gb|AEE65994.1| putative metal-activated pyridoxal enzyme [Bordetella pertussis CS]
          Length = 381

 Score = 46.2 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 26/180 (14%)

Query: 9   LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
             +D+  +++N   M         +L  + +T+   K       C  +A A   AG    
Sbjct: 17  AIVDVARMQHNIARMQDRMNGLGVSLRPHVKTS---K-------CTPVALAQLAAGAHGV 66

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKL 115
            V++++E  +         I    G+   +            +L  +  +       +  
Sbjct: 67  TVSTLKEAEQFFAAGIT-DILYAVGMAEHRLPAALALRRRGCDLKIITDNAGSARAIADF 125

Query: 116 -MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSH 173
             +        +++DT  +R G+  +EA      +   + G +L  +++H   + D  + 
Sbjct: 126 GRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDTP 185


>gi|307611384|emb|CBX01048.1| hypothetical protein LPW_27491 [Legionella pneumophila 130b]
          Length = 376

 Score = 46.2 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 34/171 (19%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L ID   LK N   M             + +T            C +IA      G    
Sbjct: 18  LVIDYEKLKYNLKMMQQHGFKWGIGIRPHCKT----------HKCTQIARLQLEYGAIGI 67

Query: 61  FVTSVEEGVKLR-----LYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLT 110
               + E   L           + I     +   +   +F++     +L+ V+     + 
Sbjct: 68  SAAKLSEAEVLVSKQITNVLITSPI-----VSEAKHSRLFNSLKSAPDLMLVVDGKDNIR 122

Query: 111 FYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
             ++L  S        L +D+G  R G++ + AL++ H        +L  I
Sbjct: 123 MLNELGKSLNQPVYVLLDIDSGIGRTGINPEAALEYGHFINGMNWLKLKGI 173


>gi|75675117|ref|YP_317538.1| Orn/DAP/Arg decarboxylase 2 [Nitrobacter winogradskyi Nb-255]
 gi|74419987|gb|ABA04186.1| ornithine decarboxylase [Nitrobacter winogradskyi Nb-255]
          Length = 380

 Score = 46.2 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 24/169 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ +      ++R    VK N A      ++   L + G   F   +V E
Sbjct: 23  LVVDLDIVRDNYQAFAKALPDSRVFYAVKANPA-----PEVLSLLASLG-SCFDTATVAE 76

Query: 68  ---GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
               +                    +  I     L   + +V       K+         
Sbjct: 77  IEMALA---AGATPDRISFGNTIKKERDIARAYALGIRLFAVDCHAEVEKIARAAPGAKV 133

Query: 125 ALQV--DTG-----FNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIIS 162
             ++  D        +R  G   +   E LD       + +G    + S
Sbjct: 134 FCRILYDCAGAEWPLSRKFGCDPEMAVEVLDLAKRLSLEPIGISFHVGS 182


>gi|85715888|ref|ZP_01046866.1| Orn/DAP/Arg decarboxylase 2 [Nitrobacter sp. Nb-311A]
 gi|85697295|gb|EAQ35175.1| Orn/DAP/Arg decarboxylase 2 [Nitrobacter sp. Nb-311A]
          Length = 380

 Score = 45.8 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 24/169 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ +      ++R    VK N A      ++   L + G   F   +V E
Sbjct: 23  LVVDLDIVRDNYQTFAKALPDSRVFYAVKANPA-----PEVLSLLASLG-SCFDTATVAE 76

Query: 68  ---GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
               +                    +  I     L   + +V       K+         
Sbjct: 77  IEMALA---AGATPDRISFGNTIKKERDIARAYALGIRLFAVDCNAEVEKIARAAPGAKV 133

Query: 125 ALQV--DTG-----FNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIIS 162
             ++  D        +R  G   +   E LD       + +G    + S
Sbjct: 134 FCRILYDCAGAEWPLSRKFGCEPEMAVEVLDVAKRLGLEPVGISFHVGS 182


>gi|326921444|ref|XP_003206969.1| PREDICTED: d-serine dehydratase-like [Meleagris gallopavo]
          Length = 348

 Score = 45.8 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 20/159 (12%)

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF--DTNLIPVISSVPQLTFYSKL 115
           +   V+++ E            I + Y +   + +        L      + +    + L
Sbjct: 34  RGIAVSTLAEARFFADGGFD-DILLAYPLPTTRLEECAGLAQRLEDFHVLLDRPEALASL 92

Query: 116 MSC----GVSHPYALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLS--LIISHLACA 167
                  G      L++D G  R G+   +  AL+      N    +++   + +H    
Sbjct: 93  RRRPLAHGKRWLVWLKLDCGNGRAGVRPTDPTALELARAIANDAPEEVTLVGVYAHCGNT 152

Query: 168 DDPSSHVNSVQLER--------FRTLISHYKGIEASLAS 198
              S       + R        F   +    G+    AS
Sbjct: 153 YGCSGADAIQAIARTTTNAVLGFVAALRQA-GVPCPHAS 190


>gi|87303083|ref|ZP_01085881.1| hypothetical protein WH5701_06251 [Synechococcus sp. WH 5701]
 gi|87282250|gb|EAQ74210.1| hypothetical protein WH5701_06251 [Synechococcus sp. WH 5701]
          Length = 215

 Score = 45.8 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 37/228 (16%)

Query: 14  TALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAP--ALYNAGVQDFFVTSVEEG-- 68
            AL     ++   L   AR  AV K        +  A        G++ F  + ++E   
Sbjct: 4   DALAQRLETLQEQLPPQARLLAVSKG-------QPAARLREAVALGLRSFGESRLQEAQA 56

Query: 69  --VKLRLYTPQARIFVLYGIHPGQEKI------IFDTNLIPVISSVPQLTFYSKLMSCGV 120
              +L    P      L     G+ +       +     I  + S+P      ++ +   
Sbjct: 57  KQAELAELEP------LDWHFIGRLQANKARGVLRHFGTIHSVDSLPLAERLQRIAAEEQ 110

Query: 121 SHP---YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
             P   + +++     + G   +E           +      +++      +        
Sbjct: 111 LSPRVFFQVKLRPDPGKTGFEPRELEQCWPRLRALEPLVPVGLMTIAPLGLEADQRFGLF 170

Query: 178 QLERFRTLISHYKGIEASLASSSGILLGP---NYHFQLTRPGISLYGG 222
           Q           K +   ++S       P          R G +L+G 
Sbjct: 171 QDCAALAATLGLKELSMGMSS-----DWPEAVRAGSTWVRLGSALFGP 213


>gi|213618848|ref|ZP_03372674.1| hypothetical protein SentesTyp_21235 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 205

 Score = 45.8 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 13/165 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N  +  AL  ++     AV K  D     GC + A A+ N G+     + 
Sbjct: 6   LEINLRKLEENARTEKALLASSGIDVMAVNKVFD-----GCVETAQAVLNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G +H  
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQV 119

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLAC 166
            L VD G  R G+   E    L+           +L  + ++  C
Sbjct: 120 LLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNC 164


>gi|317494188|ref|ZP_07952604.1| alanine racemase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917961|gb|EFV39304.1| alanine racemase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 367

 Score = 45.8 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 13/165 (7%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+IDL  L  N      +  +      AV K  D     GC + A A+ + G+     + 
Sbjct: 6   LEIDLKKLTENARVEKEMLAAHGIEVMAVNKVFD-----GCIETAQAVLDGGINVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G  H  
Sbjct: 61  TYNLKKIRATGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVMQALSDEAQRQGKIHQV 119

Query: 125 ALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLAC 166
            L +D G  R G+     ++ L             L  + ++  C
Sbjct: 120 LLMIDMGDLREGIWFAHYEQILATVKLIKELPGLALYGLGTNFNC 164


>gi|289578239|ref|YP_003476866.1| alanine racemase domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527952|gb|ADD02304.1| alanine racemase domain protein [Thermoanaerobacter italicus Ab9]
          Length = 354

 Score = 45.8 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 118/366 (32%), Gaps = 81/366 (22%)

Query: 9   LKIDLTALKNNWHSMNAL--------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L+I+L  L+ N  ++  L         G  +            G  +IA A+   GV+  
Sbjct: 5   LRINLRKLRKNTQTIVNLCEKRNIKVVGVTKVFC---------GIPEIAQAMVKGGVEIL 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCG 119
             + ++   KL+       +  +  I   +E I   D +L   I ++       +     
Sbjct: 56  GDSRIKNLKKLQHIPVFKMLIRIPMISEVEEVIKYADISLNSEIDTIKS--LSEEAKKHK 113

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             H   L VD G  R G+  ++ +         +  +L  + ++L C        +    
Sbjct: 114 KVHEIILMVDLGDLREGMLKEDVIPAVEQIVKLEGIKLRGVGTNLTCYGSVIPTPD---- 169

Query: 180 ERFRTLISHYKGIEASLA-------------SSS-------GILLGPNYHFQLTRPGISL 219
                ++     I+ S+              +SS       G++          R G ++
Sbjct: 170 -----ILEELVEIKNSINKKFDLNVDIVSGGNSSSLYLVQNGLIPKGITQL---RIGEAI 221

Query: 220 YGGTDKINKSHPMQT---VVTAEARIILIRK---ALAGELV----SYGGQKKLTRDSLIA 269
             G +         T   V T E +II +++      G L                   A
Sbjct: 222 VLGRETAFGDRIPHTYDDVFTLETQIIELKEKPSYPRGILGVNAFGERPVYVDRGIMKRA 281

Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SI 328
           + AIG  D Y   L  +DS                    ++G  + D  + ++T+S    
Sbjct: 282 ILAIGRQDVYMGDLIPIDSTIE-----------------LIGA-SSDHLIVNVTNSPYPY 323

Query: 329 EVGDYI 334
           +VGD I
Sbjct: 324 KVGDII 329


>gi|284164081|ref|YP_003402360.1| diaminopimelate decarboxylase [Haloterrigena turkmenica DSM 5511]
 gi|284013736|gb|ADB59687.1| diaminopimelate decarboxylase [Haloterrigena turkmenica DSM 5511]
          Length = 466

 Score = 45.8 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 69/203 (33%), Gaps = 38/203 (18%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE---- 67
           DL  ++ N+  + +   +A     VK NA     +++   L+  G       S  E    
Sbjct: 36  DLERVRENYRRLASAFPDAEIMYAVKANA----LDEVLETLHEEGA-GLECASAGEVKRA 90

Query: 68  --GVKL--RLYTPQARIFVLYGIHP--GQEKIIFDT-----NLIPVISSVPQLTFYSK-- 114
              ++   R     A +     ++P       + D       L   + +   +    +  
Sbjct: 91  LAAIESSDRSDGSGADVH-YTAVNPPARDLDWVVDAWEDHPELTITVGAEDTIDRLEERG 149

Query: 115 -------LMSCGVSHPYALQVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
                   ++ G+   +  +V TG   + G+ ++ A+D   N+ ++    +  + +H+  
Sbjct: 150 YDGRLCLRVNPGIDAGHHEKVKTGAAAKFGVPIERAVDVLTNAADRGF-DVVGVHAHVGS 208

Query: 167 ADDPSSHVNSVQLERFRTLISHY 189
                      QL+  R  ++  
Sbjct: 209 GVSSD------QLDDHRAFVARM 225


>gi|226227945|ref|YP_002762051.1| hypothetical protein GAU_2539 [Gemmatimonas aurantiaca T-27]
 gi|226091136|dbj|BAH39581.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 397

 Score = 45.8 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 75/263 (28%), Gaps = 42/263 (15%)

Query: 11  IDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +DL  L +N   M          L  + +T              +IA      G      
Sbjct: 34  VDLDRLAHNLDRMAAYVTLHGLKLRPHVKT----------HKSPRIAAEQLRLGAVGLSC 83

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-------DTNLIPVISSVPQLTFYSKL 115
            ++ E   +          +L    P     +        D  +      +  L   S  
Sbjct: 84  ATLREAEVMSEVCDD----ILLAYPPVGAARLERLARLPQDVRVSVAADDIQSLDALSVA 139

Query: 116 MSCG-VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIIS---HL-ACADD 169
              G  +    ++VD G +R+G+ + ++A+    +         + +     H+ A   +
Sbjct: 140 ARLGQRTFDVRVEVDLGMHRVGVTTPEKAVAIARHIDRTVGLDFAGLQFYPGHIRANVGE 199

Query: 170 PSSHVNSV--QLERFRTLI--SHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGG-- 222
               V  V   L  F   +  + +     S  S+               RPG  +Y    
Sbjct: 200 QDDLVRKVGTDLGAFIEALTDAGFPPRVVSGGSTPAAWRMHEIPGVTEVRPGTYVYNDRT 259

Query: 223 TDKINKSHPMQTVVTAEARIILI 245
           T  I         +T  A +I +
Sbjct: 260 TASIGACDWDDCALTVLATVISV 282


>gi|297528776|ref|YP_003670051.1| Orn/DAP/Arg decarboxylase 2 [Geobacillus sp. C56-T3]
 gi|297252028|gb|ADI25474.1| Orn/DAP/Arg decarboxylase 2 [Geobacillus sp. C56-T3]
          Length = 401

 Score = 45.8 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 25/197 (12%)

Query: 12  DLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           DL  L+ +  S+  +L  + R    VK NA     E+I        V  F V S  E  K
Sbjct: 28  DLDNLRVHTASLSASLPPSVRLFYAVKANA----DERILKT-VAPYVTGFEVASGGELQK 82

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130
           +R     + + +  G     E++         +  V  +    +L          ++V  
Sbjct: 83  VRRLFADSPV-IFGGPGKTDEELTAAIEERVALIHVESVWELQRLNWIAARRQTTVRVLL 141

Query: 131 GFN-----------------RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             N                 + G+  Q   +  H +       L     H + ++     
Sbjct: 142 RVNLRQAASGATLHMAGKPTQFGIDEQHIAEAIHTALTLPSIDLQGFHFH-SMSNHTDEQ 200

Query: 174 VNSVQLERFRTLISHYK 190
            +   +E   + ++  +
Sbjct: 201 AHLSFIETCLSFVAQAE 217


>gi|261884739|ref|ZP_06008778.1| alanine racemase [Campylobacter fetus subsp. venerealis str.
          Azul-94]
          Length = 96

 Score = 45.8 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 15 ALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
          A  +N   +++  G+  R  +V+KD+AYG G   +A     +G++ 
Sbjct: 10 AYIHNLTQISSQIGSKDRIISVLKDDAYGHGTGLMARISSGSGIKW 55


>gi|17986525|ref|NP_539159.1| phosphate regulon sensor protein PHOR [Brucella melitensis bv. 1
           str. 16M]
 gi|225853252|ref|YP_002733485.1| hypothetical protein BMEA_A1858 [Brucella melitensis ATCC 23457]
 gi|254694453|ref|ZP_05156281.1| hypothetical protein Babob3T_07292 [Brucella abortus bv. 3 str.
           Tulya]
 gi|256045404|ref|ZP_05448298.1| hypothetical protein Bmelb1R_12992 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114372|ref|ZP_05455105.1| hypothetical protein Bmelb3E_16205 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263260|ref|ZP_05465792.1| alanine racemase domain-containing protein [Brucella melitensis bv.
           2 str. 63/9]
 gi|260565704|ref|ZP_05836187.1| alanine racemase domain-containing protein [Brucella melitensis bv.
           1 str. 16M]
 gi|261214767|ref|ZP_05929048.1| alanine racemase domain-containing protein [Brucella abortus bv. 3
           str. Tulya]
 gi|265991833|ref|ZP_06104390.1| alanine racemase domain-containing protein [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265995672|ref|ZP_06108229.1| alanine racemase domain-containing protein [Brucella melitensis bv.
           3 str. Ether]
 gi|17982130|gb|AAL51423.1| phosphate regulon sensor protein phor [Brucella melitensis bv. 1
           str. 16M]
 gi|225641617|gb|ACO01531.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
 gi|260151077|gb|EEW86172.1| alanine racemase domain-containing protein [Brucella melitensis bv.
           1 str. 16M]
 gi|260916374|gb|EEX83235.1| alanine racemase domain-containing protein [Brucella abortus bv. 3
           str. Tulya]
 gi|262766956|gb|EEZ12574.1| alanine racemase domain-containing protein [Brucella melitensis bv.
           3 str. Ether]
 gi|263002789|gb|EEZ15192.1| alanine racemase domain-containing protein [Brucella melitensis bv.
           1 str. Rev.1]
 gi|263093224|gb|EEZ17321.1| alanine racemase domain-containing protein [Brucella melitensis bv.
           2 str. 63/9]
 gi|326409811|gb|ADZ66876.1| phosphate regulon sensor protein PHOR [Brucella melitensis M28]
 gi|326539529|gb|ADZ87744.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 226

 Score = 45.8 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 21/194 (10%)

Query: 45  CEKIAPA--------LYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEK 92
              ++            +AG + F    V+E       LR       + ++  +   +  
Sbjct: 31  LVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWPALREAWASIELHLIGPLQSNKAA 90

Query: 93  IIFDT-NLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
                 + I  +         + ++   G S    +QV+TG      G+  QEA+ F   
Sbjct: 91  DAVALFDAIETVDREKIAAALASEIRKQGKSPKLYVQVNTGLEPQKAGIPPQEAVAFVER 150

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY 208
              +    +  ++      ++P  H           L       + S+  S        +
Sbjct: 151 CRKEHGLVIEGLMCIPPAGENPGPHF-----ALLEKLAREAHVEKLSMGMSGDYETAIGF 205

Query: 209 HFQLTRPGISLYGG 222
                R G +++GG
Sbjct: 206 GATSVRVGAAIFGG 219


>gi|119184085|ref|XP_001242991.1| hypothetical protein CIMG_06887 [Coccidioides immitis RS]
          Length = 483

 Score = 45.4 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 22/143 (15%)

Query: 53  YNAGVQDFFVTSVEEGVKLRLYTPQAR-----IFVLYGIH--PGQEKIIF-------DTN 98
             A      V+++ E  +LR Y    +     I V+YG+   P     +        + +
Sbjct: 76  EKADTVRLVVSTLAEAEQLRPYLEDCKGNGRSIDVIYGLPVQPSNFVRLATLGRDLGELS 135

Query: 99  LIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQ-----EALDFTHNSFNK 152
           +  ++ S+  L F S+     G S     ++DTG+NR GL+       E L   H    +
Sbjct: 136 ITVLVDSLHILPFLSRYRELTGNSLGVFFKLDTGYNRAGLTPDSPQFKELLGAIHKVETE 195

Query: 153 --KLGQLSLIISHLACADDPSSH 173
             +        SH+  +    + 
Sbjct: 196 MPETIYFRGFYSHMGRSYGSDTT 218


>gi|87122819|ref|ZP_01078691.1| putative threonine aldolase [Marinomonas sp. MED121]
 gi|86161925|gb|EAQ63218.1| putative threonine aldolase [Marinomonas sp. MED121]
          Length = 382

 Score = 45.4 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 34/184 (18%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV---VKDNAYGLG----CEKIAPALYNAGVQDFF 61
           L +DL AL+ N  +M   + +     V   V       G       IA  L         
Sbjct: 29  LVVDLDALEKNIKTMGQYAKD---MGVRHRV------HGKMHKSVDIA-LLQEQLGDSCG 78

Query: 62  VTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVPQLTFYS 113
           V    V E         +  + V   +  P +   +          I  +  +  +   +
Sbjct: 79  VCCQKVSEAEVFARGGIK-DVLVSNQVRDPAKIDRLARMPKLGARTICCVDDIENVAELA 137

Query: 114 KLMSC-GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLI------ISHLA 165
             ++         +++D G  R G+   Q  +D           + S I      + H+ 
Sbjct: 138 AAVAKHDTQIECLVEIDCGAGRCGVQAGQPVVDIAKAIAATPGLKFSGIQAYQGAMQHME 197

Query: 166 CADD 169
              D
Sbjct: 198 SYAD 201


>gi|148560723|ref|YP_001259647.1| hypothetical protein BOV_1741 [Brucella ovis ATCC 25840]
 gi|148371980|gb|ABQ61959.1| conserved hypothetical protein TIGR00044 [Brucella ovis ATCC 25840]
          Length = 226

 Score = 45.4 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 61/194 (31%), Gaps = 21/194 (10%)

Query: 45  CEKIAPA--------LYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEK 92
              ++            +AG + F    V+E       LR       + ++  +   +  
Sbjct: 31  LVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWPALREAWASIELHLIGPLQSNKAA 90

Query: 93  IIFDT-NLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
                 ++I  +         + ++   G S    +QV+TG      G+ LQEA+ F   
Sbjct: 91  DAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQVNTGLEPQKAGIPLQEAVAFVER 150

Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY 208
              +    +  ++      ++P  H           L       + S+  S        +
Sbjct: 151 CRKEHGLVIEGLMCIPPAGENPGPHF-----ALLEKLAREAHVEKLSMGMSGDYETAIGF 205

Query: 209 HFQLTRPGISLYGG 222
                R G +++GG
Sbjct: 206 GATSVRVGAAIFGG 219


>gi|260430565|ref|ZP_05784538.1| metal-activated pyridoxal enzyme [Citreicella sp. SE45]
 gi|260418594|gb|EEX11851.1| metal-activated pyridoxal enzyme [Citreicella sp. SE45]
          Length = 387

 Score = 45.4 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 41/221 (18%)

Query: 9   LKIDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLG----CEKIAPA-LYNAGVQD 59
           L +DL AL+ N   M     A     R            G       +A   +   G   
Sbjct: 32  LVLDLDALERNIRKMGDYARAHGMRHRV----------HGKMHKSVDVAKLQMRLGGA-- 79

Query: 60  FFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVPQLTF 111
             V    V E         +  + V   +  P +   +         +I  +  +  +  
Sbjct: 80  IGVCCQKVSEAEVFVRGGIK-DVLVSNQVRDPQKIDRLAGLPKLGAKIIVCVDDLANVAE 138

Query: 112 YSKLMSC-GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI------ISH 163
            S+     G +    +++D G  R G++  EA ++        +  + + I      + H
Sbjct: 139 LSEAAQRHGTTLECFVEIDCGAGRCGVTTAEAVVEIAQAIDAAEGLRFTGIQAYQGAMQH 198

Query: 164 LACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
           L   +     +N+  + +    ++  +  G++  L S  G 
Sbjct: 199 LDSYEARRDKLNAA-IAQVNEAVAALEAVGLKPELVSGGGT 238


>gi|154150589|ref|YP_001404207.1| Orn/DAP/Arg decarboxylase 2 [Candidatus Methanoregula boonei 6A8]
 gi|153999141|gb|ABS55564.1| Orn/DAP/Arg decarboxylase 2 [Methanoregula boonei 6A8]
          Length = 397

 Score = 45.4 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 108/362 (29%), Gaps = 70/362 (19%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDN---AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           ID   ++ N+          +    VK N           I   L + G   F V S+ E
Sbjct: 39  IDHAKIRENYREFKKNFPKIQAYFAVKANSNPG-------IVKTLMDLGAS-FDVASMPE 90

Query: 68  GVKL-----------RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            + +           R      RI     I P   + + + N    + +   +    K+ 
Sbjct: 91  FMIVHNFIKDMPDKERQDFIWDRIIYANTIKP--IETLEELNQYKPLVTFDNIEELKKIR 148

Query: 117 SCGVSHPYALQV---DTG-----FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
                    L++   +TG      ++ G    EA+D    +F+  L  +  +  H+    
Sbjct: 149 QHAPQAGLVLRLRVPNTGSMVELSSKFGADPGEAVDLIKAAFDLGLV-VEGLSFHVGS-- 205

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
                    Q   F   +   +        S+ I+     H    +  I   GG   +  
Sbjct: 206 ---------QCTNFENYVVALQI-------SANIIEETE-HRTGRKIRILDIGGGFPVKY 248

Query: 229 SHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG--YADGYPLT 282
           +  +++     V  +A I  +       L   G        +L+A   +G  Y DG P  
Sbjct: 249 NPEVRSIEELAVKLKAEIARLFPDDMEILAEPGRFLVANACTLVAKV-VGKAYRDGKPCY 307

Query: 283 LSGLDSEHSPSVFLGGK------GFIKGYM--VPILGKIT--MDMTMFDITDSLSIEVGD 332
                  H+ S  +          F +G      + G      D       +   +++GD
Sbjct: 308 YINDGVYHTYSGQVFDHCTYPVLAFKEGPRQISAVFGPTCDAFDTITLS-AELPELDIGD 366

Query: 333 YI 334
            +
Sbjct: 367 LV 368


>gi|146308950|ref|YP_001189415.1| alanine racemase domain-containing protein [Pseudomonas mendocina
           ymp]
 gi|145577151|gb|ABP86683.1| alanine racemase domain protein [Pseudomonas mendocina ymp]
          Length = 420

 Score = 45.4 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 18/168 (10%)

Query: 96  DTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKK 153
              L  +I S  +L  Y++L    G     AL++D G  R G    +AL     +  +  
Sbjct: 146 ARQLTWLIDSAERLRQYAELARALGQPLRIALEIDIGMARGGFRDPQALGQALQHLQDPP 205

Query: 154 LGQLSLII---SHLACAD--DPSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGIL 203
             QL  ++   +H+A A        V +    R+R  ++  +          L +  G L
Sbjct: 206 QLQLQGLMGYDAHVAHAAPWTEQRRVFADTNARYREFLAAARAFPLLWPRQPLLNGGGSL 265

Query: 204 LGP-NYHFQL----TRPGISLYGGTD-KINKSHPMQTVVTAEARIILI 245
             P +            G +L    D         Q  +   + ++ +
Sbjct: 266 TYPLHSRSDTPLNEVAVGSALLKPGDFDTPALSEHQPALWIASPLLKV 313


>gi|284162042|ref|YP_003400665.1| diaminopimelate decarboxylase [Archaeoglobus profundus DSM 5631]
 gi|284012039|gb|ADB57992.1| diaminopimelate decarboxylase [Archaeoglobus profundus DSM 5631]
          Length = 419

 Score = 45.4 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 54/195 (27%), Gaps = 34/195 (17%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDN---AYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL- 71
           L+ N  +      +A     VK N   A       I   +   G   F    V  G +L 
Sbjct: 35  LEENIEAYKRAFPDAEILYAVKANNNLA-------IMRIIAKHG---FG-ADVFSGGELY 83

Query: 72  --RLYTPQARIFVLYGIHPGQEKII--FDTNLIPVISSVPQLTFYSKLMSCG-------- 119
             RL    +   +  G     E+I    D N+   + S+ +L    K+            
Sbjct: 84  MARLAGFPSNKLLFNGNSKSDEEIEMGIDCNVKFSVDSLDELYTIQKIAEKKGKIVEIAF 143

Query: 120 -----VSHPYALQVDTGFN--RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                +      ++ TG    + G+    AL+    +      +   I  H+        
Sbjct: 144 RVNPDIDPKTHPKIATGLKTSKFGIPWDIALEAYKKAVELPNVKPVGIHCHIGSQIKEID 203

Query: 173 HVNSVQLERFRTLIS 187
                    F   + 
Sbjct: 204 PFVEALNRLFDLAVE 218


>gi|261492832|ref|ZP_05989379.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261494803|ref|ZP_05991281.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261309514|gb|EEY10739.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311514|gb|EEY12670.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 249

 Score = 45.4 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 59/195 (30%), Gaps = 22/195 (11%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK------IIFDTNL 99
            +        G + F    V+E ++       A    L     G  +      +    + 
Sbjct: 59  VEAIQEAIEGGQRAFGENYVQEAIE--KIECFANRSDLEWHFIGPLQSNKTKLVAAHFDW 116

Query: 100 IPVISSVPQLTFYSKLMSCGV---SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ 156
           I  +  +      S+    G    +    + +    ++ G+   E L            +
Sbjct: 117 IQTVDRLKIAERLSEQRPIGKAPLNVLIQINISDEASKSGIEPDEMLSLAQAISQLPNLK 176

Query: 157 LSLIIS--HLACADDPSSHVNSVQLERFRTLISHYKGIEA-SLASS----SGILLGPNYH 209
           L  +++        +          + F  L + ++GI+  S+  S    + I  G    
Sbjct: 177 LRGLMAIPKPESEPEQQKIAFCKMQQLFHRLQAEFEGIDTLSMGMSDDMQAAIECGST-- 234

Query: 210 FQLTRPGISLYGGTD 224
             + R G +++G  D
Sbjct: 235 --MVRIGTAIFGARD 247


>gi|238504745|ref|XP_002383603.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|317155184|ref|XP_001824975.2| metal-activated pyridoxal enzyme [Aspergillus oryzae RIB40]
 gi|220689717|gb|EED46067.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 367

 Score = 45.4 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 14/138 (10%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV-LYGIHPGQEKIIFD-----TNLIPV 102
           A  L  AG +   V  V E   +        I +    I   + K + +       +  V
Sbjct: 56  AQKLAAAGAKGCCVAKVSEAEAITAAGFD-DILITCEIIGEPKVKRLVELFKKHKKIRIV 114

Query: 103 ISSVPQLTFYS-KLMSCGVSHPYALQVDT--GFNRLGL----SLQEALDFTHNSFNKKLG 155
           + S    T  S  L   GV+ P ++ +D   G +R G+    +         N    +L 
Sbjct: 115 VDSEVGATAISNALAQAGVAEPISVLIDLDVGLHRTGVANAQAALALARHIKNLRQLRLI 174

Query: 156 QLSLIISHLACADDPSSH 173
            +     HL         
Sbjct: 175 GVQGYEGHLQHLHSWEDR 192


>gi|295688285|ref|YP_003591978.1| alanine racemase domain-containing protein [Caulobacter segnis ATCC
           21756]
 gi|295430188|gb|ADG09360.1| alanine racemase domain protein [Caulobacter segnis ATCC 21756]
          Length = 401

 Score = 45.4 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 77/274 (28%), Gaps = 46/274 (16%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLG----CEKIAPALYNAGVQDFFV 62
           L +D  AL+ N   M AL  +   R  A         G    C  +   +   G      
Sbjct: 15  LVVDRAALERNIDRMQALCDAAGVRLRA--------HGKTHKCSTLGRLIVARGAVGLCC 66

Query: 63  TSVEEGVK-----LRLYTPQARIFVLYGIHPGQEKIIFDTNLI------PVISSVPQLTF 111
            +V E        ++     A +       P +   +  T +        V+    Q+  
Sbjct: 67  QTVGEAEAYVAGGIKDVLVTAPVPAWG---PPRLAALARTGIPMGVTIGAVVDDEGQVDR 123

Query: 112 YS-KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
            S   ++ GV+    + +D G +R G+   EAL     +      +   I ++L      
Sbjct: 124 LSDAAVAAGVTLDVVIDLDLGTHRAGVYPHEALALARAADAAPGLRFGGIQAYLGHLQHL 183

Query: 171 SS-----HVNSVQLERFRTLISHY--KGIEASLASSS--GILLGPNYHFQLTRPGISLYG 221
                    +       + L++     G+   + +    G           T      Y 
Sbjct: 184 DDGAVRKSADEAAFATLKALVAELTAAGLPPPVVTGGGTGTHAFDLASGVFTELQAGSYA 243

Query: 222 GTD--------KINKSHPMQTVVTAEARIILIRK 247
             D              P +  +   + I+  R 
Sbjct: 244 VMDVEYDVCGAPGGGDWPFEPSLFVASTIVSARH 277


>gi|21325381|dbj|BAC00003.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
          Length = 380

 Score = 45.4 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 99/324 (30%), Gaps = 50/324 (15%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           + ID   L  N   M A +G    A    VK         +IA    +AG +     ++ 
Sbjct: 45  VLIDRERLTANISRMAAHAGAHEIALRPHVKT----HKIIEIAQMQVDAGARGITCATIG 100

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125
           E            IF+ Y ++     +     +   IS  V  +                
Sbjct: 101 EAEIFAGAGFT-DIFIAYPLYLTDHAVQRLNAIPGEISIGVDSVEMAQATAGLREDIKAL 159

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++VD+G  R G++                 + + + +    +  P +          +  
Sbjct: 160 IEVDSGHRRSGVTA--TASELSQIREALGSRYAGVFTFPGHSYGPGNGE--------QAA 209

Query: 186 ISHYKGIEASLASSSGILL----GPNYHF----QLTRPGISLYGGTDKI--NKSHPMQTV 235
               + +  S+   +G L      P+  F       RPG+ ++  + +I        Q  
Sbjct: 210 ADELQALNNSVQRLAGGLTSGGSSPSAQFTDAIDEMRPGVYVFNDSQQITSGACTEKQVA 269

Query: 236 VTAEARIILIRKALAGELV--SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE---- 289
           +T  + ++  R      ++  +        + + I        DG    L   ++     
Sbjct: 270 MTVLSTVVS-RNVSDRRIILDAGSKILSTDKPAWI--------DGNGFVLGNPEARISAL 320

Query: 290 --HSPSVFLGGKGFIKGYMVPILG 311
             H  ++F   K  +     P++G
Sbjct: 321 SEHHATIFWPDKVLL-----PVIG 339


>gi|255590737|ref|XP_002535350.1| proline synthetase associated protein, putative [Ricinus communis]
 gi|223523376|gb|EEF27030.1| proline synthetase associated protein, putative [Ricinus communis]
          Length = 238

 Score = 45.4 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 34/201 (16%)

Query: 15  ALKNNWHSMNALSGNAR----------TAAVVKDNAYGLGCEKIA-PALYNAGVQDFFVT 63
           AL +N   +     +A+            AV K           A  A Y+AG   F   
Sbjct: 3   ALSDNLACIRQQITDAQARFQAMQPVTLCAVSKAQ------PATAIRAAYDAGQTVFGEN 56

Query: 64  SVEEGVKLRLYTPQARI---FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG- 119
            ++E ++ +       I   F+   I   + + I        + SV +L    +L +   
Sbjct: 57  YLQEALQKQAELDDCAIAWHFI-GPIQSNKTQPIARHFDW--VHSVDRLKIAQRLSNARP 113

Query: 120 -----VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                ++    + +    ++ G S QE L+   N       QL  ++     A       
Sbjct: 114 SDLPPLNICLQVNISEEASKSGASGQELLELALNIKQLPHLQLRGLM-----AIPAPCSD 168

Query: 175 NSVQLERFRTLISHYKGIEAS 195
              Q ++FR + + ++ + + 
Sbjct: 169 FEQQRDQFRQVRALFEQLNSH 189


>gi|282857080|ref|ZP_06266327.1| metal-activated pyridoxal enzyme [Pyramidobacter piscolens W5455]
 gi|282585089|gb|EFB90410.1| metal-activated pyridoxal enzyme [Pyramidobacter piscolens W5455]
          Length = 369

 Score = 45.4 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 90/310 (29%), Gaps = 55/310 (17%)

Query: 54  NAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ-----EKIIFDTNLIPVISSVPQ 108
           + G +   V  + E   +        IF+   I          K+     L   I     
Sbjct: 54  DCGCKGIAVAKLGEAEVMADAGFD-DIFIANEIVGDIKMKRLRKLAQSIKLSWGIDCPDH 112

Query: 109 LTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISH-LA 165
           +    K+  S  V     ++++ G  R G+  + + LD   +        L  + SH   
Sbjct: 113 VEAAEKVFASASVKAEVLVEIEVGERRSGIIEESDFLDLLDSIKKAPHVHLKGVFSHEGH 172

Query: 166 CADDPS-----SHVNSVQLE--RFRTLI--SHYKGIEASLASSSGILLGPNYHFQLT--- 213
           C + P          + Q    RF  +     ++    S+ S+  ++       +     
Sbjct: 173 CYNSPDLATCRKEFIASQKRTLRFVQIAKEQGFEIETVSIGSTPSLMHDDFPVLEGISEF 232

Query: 214 RPGISLYGGTDKINKSHP-MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAA 272
           RPG  +       N +    +   T  A +I                        + +  
Sbjct: 233 RPGTYVLMDASMANAAGTLSRCAATVLATVIS-----------------RPTPERV-ILD 274

Query: 273 IGYADGYP---LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF--DITDSLS 327
           +G A G      +     +E   +V      +I             D      + T   +
Sbjct: 275 VG-AKGITMQRRSQGITATEGLGTVKGYDNVYIHDVY---------DEHAIIYNKTFHDA 324

Query: 328 IEVGDYIQIF 337
           +++GD ++I 
Sbjct: 325 VKIGDKVEII 334


>gi|269140447|ref|YP_003297148.1| hypothetical protein ETAE_3106 [Edwardsiella tarda EIB202]
 gi|267986108|gb|ACY85937.1| hypothetical protein ETAE_3106 [Edwardsiella tarda EIB202]
 gi|304560239|gb|ADM42903.1| Putative cytoplasmic protein [Edwardsiella tarda FL6-60]
          Length = 367

 Score = 45.4 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 19/191 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNA--RTAAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+IDL  L++N  +   L G       AV K  D     GC + A A+   G++    + 
Sbjct: 6   LEIDLRKLRDNARTEVTLLGEQGIEVMAVNKVFD-----GCPETARAVVEGGIRVVAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLMSCGVSH 122
                K+R         +        E+++   ++   ++S P       ++ +     H
Sbjct: 61  TYNLKKIRATGCT-TCLLRSPCLSEIEEVVRYADI--SLNSEPAVLRALSAEALRQDKVH 117

Query: 123 PYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
              L VD G  R G+  +   + L+      +     L  + ++  C       V +   
Sbjct: 118 QVLLMVDMGDLREGIWFEHYAQILETVRLIASLPGLALYGLGTNFNCYGTVLPTVENG-- 175

Query: 180 ERFRTLISHYK 190
           ERF+ +    +
Sbjct: 176 ERFQAIARRLE 186


>gi|83773715|dbj|BAE63842.1| unnamed protein product [Aspergillus oryzae]
          Length = 343

 Score = 45.0 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 14/138 (10%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV-LYGIHPGQEKIIFD-----TNLIPV 102
           A  L  AG +   V  V E   +        I +    I   + K + +       +  V
Sbjct: 32  AQKLAAAGAKGCCVAKVSEAEAITAAGFD-DILITCEIIGEPKVKRLVELFKKHKKIRIV 90

Query: 103 ISSVPQLTFYS-KLMSCGVSHPYALQVDT--GFNRLGL----SLQEALDFTHNSFNKKLG 155
           + S    T  S  L   GV+ P ++ +D   G +R G+    +         N    +L 
Sbjct: 91  VDSEVGATAISNALAQAGVAEPISVLIDLDVGLHRTGVANAQAALALARHIKNLRQLRLI 150

Query: 156 QLSLIISHLACADDPSSH 173
            +     HL         
Sbjct: 151 GVQGYEGHLQHLHSWEDR 168


>gi|295699224|ref|YP_003607117.1| alanine racemase domain protein [Burkholderia sp. CCGE1002]
 gi|295438437|gb|ADG17606.1| alanine racemase domain protein [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 45.0 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 12/149 (8%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH--PGQEKIIFDT-----N 98
             +  A   AG +   V++++E              +LY +   P +            +
Sbjct: 46  IDVVRAQIAAGARGITVSTLKEAEAFFAAGVDD---ILYAVSMVPSKLPRALALRRQGCD 102

Query: 99  LIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQ 156
           L  V+ +       +      G +    ++VDT  +R G+  ++          ++   +
Sbjct: 103 LKLVVDNPTAAAALAAFGDQHGETFEVWIEVDTDGHRSGIQPEQQTLLDVGRILHENGVK 162

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTL 185
           +  +++H   + + ++      L      
Sbjct: 163 VGGVMTHAGSSYELNTPEALAALAEQERA 191


>gi|168186352|ref|ZP_02620987.1| amino acid racemase [Clostridium botulinum C str. Eklund]
 gi|169295637|gb|EDS77770.1| amino acid racemase [Clostridium botulinum C str. Eklund]
          Length = 368

 Score = 45.0 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 17/171 (9%)

Query: 5   EFLRLKIDLTALKNN----WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
            + +L+I+   LK+N      ++  +        V K      G  + A A+ + G+   
Sbjct: 2   SYPQLQINTKKLKHNAKVEVEALRRI--GVEVMGVNKVF---NGSVETAKAIVDGGMNVV 56

Query: 61  FVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118
             + ++    L+     +    +L      +   +     I + S +  +   SK  +  
Sbjct: 57  AESRID---NLKKIQVVKCEKALLRSPALSEIGDVVKYADISLNSEIEIIKELSKEAIKQ 113

Query: 119 GVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLAC 166
              H   L +D G  R G+     +E  +           ++  + ++  C
Sbjct: 114 NKVHKVLLMIDFGDIREGIWFENKEEIEEALSEIKLLPNIEIYGLGTNFNC 164


>gi|255946227|ref|XP_002563881.1| Pc20g14030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588616|emb|CAP86732.1| Pc20g14030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 367

 Score = 45.0 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 55/189 (29%), Gaps = 44/189 (23%)

Query: 12  DLTALKNNWHSM-NALSG------------NARTAA--VVKDNAYGLGCEKIAPALYNAG 56
           DL  ++ N   + + L               +   A  +VK                  G
Sbjct: 21  DLDLVEANIKKLMDKLLPTGLDIRPHLKTTKSAILADKMVKA-----------------G 63

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTF 111
            +   V  V E   +              I P + + + +       +  V+ S    T 
Sbjct: 64  AKGGCVAKVSEAEVIAAAGFDDLFITCEIIGPAKVQRLVELYRKHRKIRIVVDSEAGATA 123

Query: 112 Y-SKLMSCGVSHPYALQVDT--GFNRLGLSLQE-ALDFTHNSFNKKLGQLSLII---SHL 164
               L + G+  P ++ +D   G +R G+   + A+    +    K  +L  +     HL
Sbjct: 124 IDKALAAAGIDEPISVLIDLDVGLHRTGVLPGDPAMTLARHVQGLKHLKLIGLHGYEGHL 183

Query: 165 ACADDPSSH 173
               D    
Sbjct: 184 QHLHDKEDR 192


>gi|167549636|ref|ZP_02343395.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205325432|gb|EDZ13271.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 367

 Score = 45.0 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 13/165 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N  +  AL  ++     AV K  D     GC + A A++N G+     + 
Sbjct: 6   LEINLRKLEENARTEKALLASSGIDVMAVNKVFD-----GCVETAQAVFNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G +H  
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQV 119

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLAC 166
            L VD G  R G+   E    L+           +L  + ++  C
Sbjct: 120 LLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNC 164


>gi|168817905|ref|ZP_02829905.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205344710|gb|EDZ31474.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086793|emb|CBY96565.1| hypothetical protein SENTW_2484 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 367

 Score = 45.0 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 109/367 (29%), Gaps = 70/367 (19%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N  +  AL  ++     AV K  D     GC + A A++N G+     + 
Sbjct: 6   LEINLRKLEENARTEKALLASSGIDVMAVNKVFD-----GCVETAQAVFNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G +H  
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQV 119

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            L VD G  R G+   E    L+           +L  + ++  C       V +   E 
Sbjct: 120 LLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNCYGTVLPTVKNG--ED 177

Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---- 229
           F  L +          + + A   +S  +L    +   L    I   GG  +        
Sbjct: 178 FLALAARLEADSGIPVRRLSAGNCTSYHLLDKGIWPQGLNHLRI---GGLHEFGIEYVDM 234

Query: 230 -------HPMQTVVT-------AEARIILIR---KALAGELVS----YGGQKKLTRDSLI 268
                  H  + V          EA II +        GEL                   
Sbjct: 235 KYLNEFHHSAKPVGKACSDMYILEAEIIELNSKPTVPVGELGVDAFLQSKTFVDRGIRRR 294

Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS- 327
           A+ A G            D      V       I G         T D T+ DI D    
Sbjct: 295 ALLAFG----------RQDVPSDNCVPCDDAITILGQ--------TSDHTLVDIEDCRQS 336

Query: 328 IEVGDYI 334
           ++VGD +
Sbjct: 337 LKVGDVV 343


>gi|221236140|ref|YP_002518577.1| alanine racemase [Caulobacter crescentus NA1000]
 gi|220965313|gb|ACL96669.1| alanine racemase [Caulobacter crescentus NA1000]
          Length = 402

 Score = 45.0 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 77/265 (29%), Gaps = 38/265 (14%)

Query: 9   LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLG----CEKIAPALYNAGVQDFFV 62
           L +D  AL+ N   M AL  +   R  A         G    C  +   +   G      
Sbjct: 20  LVVDRAALERNLARMQALCDAAGVRLRA--------HGKTHKCSTLGRLIIERGAVGLCC 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQLTFYS-KLM 116
            +V E         Q  + V     P     +         +  V     Q+   S   +
Sbjct: 72  QTVGEAEAYVAGGIQ-DVLVTAPSPPWGAARLAALAKTGARIGAVADDEGQIDRLSDAAV 130

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPS-- 171
           + GV+    + +D G +R G   ++AL     +      + + +   + HL   DD    
Sbjct: 131 AAGVTLDLVVDLDLGTHRAGAYPKDALRLARAADAAPGLRFAGLQAYLGHLQHMDDLDLR 190

Query: 172 SHVNSVQLERFRTLISHY--KGIEASLASSS--GILLGPNYHFQLTRPGISLYGGTD--- 224
              +       + L++     G+   + +    G  +        T      Y   D   
Sbjct: 191 KSADEAAFATLKALVAELTEAGLPPPVVTGGGTGTHIYDLASGVYTELQAGSYAVMDVEY 250

Query: 225 -----KINKSHPMQTVVTAEARIIL 244
                   ++   +  +   A ++ 
Sbjct: 251 DACGAPGGQAWGFEPAMAIAATVVS 275


>gi|16765685|ref|NP_461300.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56412745|ref|YP_149820.1| hypothetical protein SPA0506 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|167993046|ref|ZP_02574141.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168229734|ref|ZP_02654792.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168242483|ref|ZP_02667415.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261619|ref|ZP_02683592.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168465931|ref|ZP_02699801.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194444323|ref|YP_002041622.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448158|ref|YP_002046414.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469314|ref|ZP_03075298.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197262878|ref|ZP_03162952.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361679|ref|YP_002141315.1| hypothetical protein SSPA0470 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198242172|ref|YP_002216431.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200388455|ref|ZP_03215067.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929244|ref|ZP_03220387.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205353473|ref|YP_002227274.1| hypothetical protein SG2387 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857776|ref|YP_002244427.1| hypothetical protein SEN2340 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224583153|ref|YP_002636951.1| hypothetical protein SPC_1348 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912362|ref|ZP_04656199.1| hypothetical protein SentesTe_14691 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16420901|gb|AAL21259.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56127002|gb|AAV76508.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194402986|gb|ACF63208.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406462|gb|ACF66681.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194455678|gb|EDX44517.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195631333|gb|EDX49893.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197093155|emb|CAR58599.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197241133|gb|EDY23753.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197936688|gb|ACH74021.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199605553|gb|EDZ04098.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321788|gb|EDZ06987.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205273254|emb|CAR38217.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205328822|gb|EDZ15586.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335650|gb|EDZ22414.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338419|gb|EDZ25183.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205349583|gb|EDZ36214.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709579|emb|CAR33924.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467680|gb|ACN45510.1| hypothetical protein SPC_1348 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247564|emb|CBG25391.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994459|gb|ACY89344.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158916|emb|CBW18429.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913349|dbj|BAJ37323.1| hypothetical protein STMDT12_C23800 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222940|gb|EFX48011.1| Putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322617103|gb|EFY14009.1| hypothetical protein SEEM315_08805 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617591|gb|EFY14490.1| hypothetical protein SEEM971_01889 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624779|gb|EFY21608.1| hypothetical protein SEEM973_01357 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630329|gb|EFY27099.1| hypothetical protein SEEM974_07706 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634509|gb|EFY31242.1| hypothetical protein SEEM201_19711 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639220|gb|EFY35912.1| hypothetical protein SEEM202_08999 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640083|gb|EFY36750.1| hypothetical protein SEEM954_16279 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645697|gb|EFY42221.1| hypothetical protein SEEM054_15998 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652061|gb|EFY48424.1| hypothetical protein SEEM675_01167 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656233|gb|EFY52530.1| hypothetical protein SEEM965_15354 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659385|gb|EFY55632.1| hypothetical protein SEEM19N_01703 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665845|gb|EFY62028.1| hypothetical protein SEEM801_10366 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669916|gb|EFY66057.1| hypothetical protein SEEM507_14210 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673901|gb|EFY69998.1| hypothetical protein SEEM877_08579 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678660|gb|EFY74716.1| hypothetical protein SEEM867_09322 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683545|gb|EFY79559.1| hypothetical protein SEEM180_09966 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687620|gb|EFY83590.1| hypothetical protein SEEM600_13387 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323130690|gb|ADX18120.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323193545|gb|EFZ78750.1| hypothetical protein SEEM581_00860 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198452|gb|EFZ83554.1| hypothetical protein SEEM501_10272 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204564|gb|EFZ89567.1| hypothetical protein SEEM460_00150 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208498|gb|EFZ93437.1| hypothetical protein SEEM020_08866 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213635|gb|EFZ98424.1| hypothetical protein SEEM6152_06983 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218329|gb|EGA03039.1| hypothetical protein SEEM0077_15566 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222916|gb|EGA07265.1| hypothetical protein SEEM0047_18987 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224509|gb|EGA08791.1| hypothetical protein SEEM0055_20206 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232324|gb|EGA16427.1| hypothetical protein SEEM0052_09396 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235642|gb|EGA19726.1| hypothetical protein SEEM3312_11961 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323241198|gb|EGA25234.1| hypothetical protein SEEM5258_16684 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244940|gb|EGA28942.1| hypothetical protein SEEM1156_21517 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323250059|gb|EGA33953.1| hypothetical protein SEEM9199_06316 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253843|gb|EGA37668.1| hypothetical protein SEEM8282_06759 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323254980|gb|EGA38771.1| hypothetical protein SEEM8283_18395 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259833|gb|EGA43465.1| hypothetical protein SEEM8284_18670 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264146|gb|EGA47653.1| hypothetical protein SEEM8285_16403 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270844|gb|EGA54282.1| hypothetical protein SEEM8287_08645 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624183|gb|EGE30528.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628566|gb|EGE34909.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989291|gb|AEF08274.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 367

 Score = 45.0 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 13/165 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N  +  AL  ++     AV K  D     GC + A A++N G+     + 
Sbjct: 6   LEINLRKLEENARTEKALLASSGIDVMAVNKVFD-----GCVETAQAVFNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G +H  
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQV 119

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLAC 166
            L VD G  R G+   E    L+           +L  + ++  C
Sbjct: 120 LLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNC 164


>gi|154248961|ref|YP_001409786.1| alanine racemase domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154152897|gb|ABS60129.1| alanine racemase domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 358

 Score = 45.0 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 13/164 (7%)

Query: 6   FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60
           F R+ I++ ++  N   +  +  S +     V K    N       +IA  +   GV   
Sbjct: 5   FPRVVINIDSIAYNTQKIAEICHSNDIELVGVTKLALAN------PEIARVMRKNGVDKL 58

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119
             + ++  +KL          +L      +  +        ++S         K++    
Sbjct: 59  GDSRLKNIIKLYENNVPGPYQLLRIPMISELPLAVKYADEILVSMPETAYEIDKIVGELQ 118

Query: 120 VSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIIS 162
            +      +D G  R G+  + A+ +    S   K  +L  I +
Sbjct: 119 KNVQIIYMIDVGDLREGVWYEHAISEIYEVSKQLKFARLVGIGT 162


>gi|304313337|ref|YP_003812935.1| hypothetical protein HDN1F_37300 [gamma proteobacterium HdN1]
 gi|301799070|emb|CBL47313.1| conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 238

 Score = 45.0 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 50  PALYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS 105
             L+ AG +DF  + ++E +     L+             +   + + I        + S
Sbjct: 47  RELFEAGCRDFGESYLQEALPKMEALQDLPITWHFI--GPLQSNKTRGIASHFDW--VHS 102

Query: 106 VPQLTFYSKLMS------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL 159
           V  L    +L          ++    + +D    + G++ + A    +        +L  
Sbjct: 103 VDSLRLAERLSEQRPPTLAPLNVCLQINLDNEPTKSGVAPEFAPPLANAIAALPHLRLRG 162

Query: 160 IISHLACADDPSSHVNSVQLERFRTLISHYKGIEAS------------LASS----SGIL 203
           ++    C   P   + S Q +    L +    I+A             +  S    + I 
Sbjct: 163 LM----CVPAP-RELFSEQRQSAAALRALLSHIQAHCPRCHPALDTLSIGMSDDLEAAIA 217

Query: 204 LGPNYHFQLTRPGISLYGGTDK 225
            G      L R G +L+G    
Sbjct: 218 EGST----LVRVGSALFGPRPP 235


>gi|148379964|ref|YP_001254505.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
 gi|148289448|emb|CAL83545.1| putative alanine racemase [Clostridium botulinum A str. ATCC 3502]
          Length = 322

 Score = 44.7 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 108/321 (33%), Gaps = 45/321 (14%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106
           KIA A+    V     + +E   KL          +L      Q + +     I ++S +
Sbjct: 12  KIAKAIAEEKVDILADSRIENLKKL--AHINLPKMLLRLPMISQVEEVVKYADISLVSDI 69

Query: 107 PQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHL 164
             +   SK  +     H   L +D G  R G+  +E +        N K  +L  I ++L
Sbjct: 70  ITIRELSKEAIKQNKIHSIILMIDLGDLREGIFNEEEIYITVKEILNFKNVKLMGIGTNL 129

Query: 165 ACADDPSSHVNSV-QLERFRTLISHYKGIE---ASLASSSGILLGP----NYHFQLTRPG 216
           +C         ++ QL   +  I +   I+    S  +S  I L             R G
Sbjct: 130 SCYGGVIPTYKNLSQLVNIKKNIENKFNIKIEVISGGNSGSISLFKDNKIPQEINQLRLG 189

Query: 217 ISL---YGGTDKINKSHPMQTVVTAEARIILIRK---ALAG----ELVSYGGQKKLTRDS 266
            S+    G  D+  +   ++        ++ ++       G    +        +     
Sbjct: 190 ASISLGIGLNDEHIEPL-LKDAFKLVVEVVEVKNKPSVPIGIIGLDAFGNKPFFEDKGIM 248

Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS- 325
             A+ AIG  D  P  L  +D   S                 ILG  + D  + DIT+  
Sbjct: 249 KRAICAIGRQDISPENLIPIDDNIS-----------------ILGA-SSDHLLLDITNCN 290

Query: 326 LSIEVGDYIQI---FGPDIKL 343
              ++GD I+    FG  + +
Sbjct: 291 KDYKIGDKIEFNVTFGGCLSV 311


>gi|154251738|ref|YP_001412562.1| alanine racemase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154155688|gb|ABS62905.1| alanine racemase domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 230

 Score = 44.7 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 36/207 (17%)

Query: 32  TAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV----KLRL--YTPQARIFV 82
             AV K    +A       IAP L +AG + F    V+E       LR      +     
Sbjct: 40  LIAVSKTFEADA-------IAP-LLDAGQRCFGENRVQEAAGKWPHLRERYSGIE----- 86

Query: 83  LYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKL---MSCGVSHP-YALQVDTGFNR--L 135
           L+ I P Q   + D  +L  V+ ++ +      L      G   P   LQV+TG      
Sbjct: 87  LHLIGPLQSNKLNDALDLFDVLHTLDRAKLAEALVKARDAGKRLPRLFLQVNTGEEPQKA 146

Query: 136 GLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI-EA 194
           G+   +   F     N    ++  ++      ++P+ H   +        I+   G+ + 
Sbjct: 147 GVPPGDVDRFLERCRNDWKLEIEGLMCIPPVTEEPALHFALL------EKIARRNGLSKL 200

Query: 195 SLASSSGILLGPNYHFQLTRPGISLYG 221
           S+  S+             R G +L+G
Sbjct: 201 SMGMSADFETAIRLGATHVRVGSALFG 227


>gi|108757337|ref|YP_631327.1| alanine racemase domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108461217|gb|ABF86402.1| alanine racemase domain protein [Myxococcus xanthus DK 1622]
          Length = 363

 Score = 44.7 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 23/223 (10%)

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF------DTNLIPVISSVPQLTFYS-K 114
           V +V E     + T    I  L     G +++           L   + S   L   S  
Sbjct: 65  VATVREAEV--MATVCDDIL-LAYPPVGDDRLTRLMALPPHVRLTVALDSGEALEMLSRA 121

Query: 115 LMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIIS---HLACADDP 170
               G +    +++D G  R+G+ S ++A+       +    +   I     HL      
Sbjct: 122 ARRAGRTVGVLVELDLGMRRVGVQSPEDAVALARAVTSSSGLEYRGITFYAGHLRMPQAE 181

Query: 171 SSHVNSVQLERFRTLISHY--KGIEASLAS--SSGILL--GPNYHFQLTRPGISLYGGTD 224
                  Q  R  T +      G+     S  S+  L            RPGI+++   +
Sbjct: 182 LGDAMREQSVRLATYVDTLADAGLRPKTVSGGSTPTLWRSHEVAGLTEIRPGINIFNDRN 241

Query: 225 --KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265
              +      +   +  A ++         ++  G +     +
Sbjct: 242 AVSVGACPWEECAYSVLATVVST-TVPGQAVIDAGSKALAKEE 283


>gi|121608653|ref|YP_996460.1| alanine racemase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121553293|gb|ABM57442.1| alanine racemase domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 239

 Score = 44.7 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 37/212 (17%)

Query: 44  GCEKIAPAL--------YNAGVQDFFVTSVEEG----VKLRLYTPQARI--FVLYGIHPG 89
           G   +A             AG + F    ++EG    + LR   P A +    +  +   
Sbjct: 30  GLLAVAKTFNADAVAQAVAAGQRAFGENYIQEGVDKILALRAALPDAALQWHCIGPVQSN 89

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP------YALQVDTGFNRLGLSLQEAL 143
           + +++ +      + SV +L    +L +   +H         + +D G  + G++  +  
Sbjct: 90  KTRLVAEHFDW--VHSVDRLKIAQRLSAQRPAHLPPLQLCIQVNLDGGATKSGVTAGQLP 147

Query: 144 DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL------ERFRTLIS-HYKGIE--- 193
                       +L  ++S      DP+    + +         F  + +    G+E   
Sbjct: 148 GLLRAIAQLPRLRLRGLMS----IPDPAPDFQAQKAIHASVKRLFDQICASAVPGLEDFD 203

Query: 194 -ASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
             SL  ++ +         L R G  ++G   
Sbjct: 204 TLSLGMTADLEAAIWAGSTLVRVGSGIFGDRP 235


>gi|326328911|ref|ZP_08195243.1| putative amino acid aldolase or racemase [Nocardioidaceae bacterium
           Broad-1]
 gi|325953308|gb|EGD45316.1| putative amino acid aldolase or racemase [Nocardioidaceae bacterium
           Broad-1]
          Length = 407

 Score = 44.7 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 28/166 (16%)

Query: 14  TALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALY----NAGVQDFFVTSVEEG 68
           +AL++N  ++   +  +    A         G   +AP+LY    +AG     V S  + 
Sbjct: 46  SALEHNIATLAGFAEEHGLLLAP-------HGKTTMAPSLYQRQIDAGAWAITVASPSQA 98

Query: 69  VKLRLYTPQARIFV---------LYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           +  R    + R+ V         L  +      +      + +  +  V      S L+ 
Sbjct: 99  LVARHAGVR-RVLVANEILDHSALSWVASERAADPEFLHLHWVDSVEGVEAAAEASALVG 157

Query: 118 CGVSHPYALQVDTGF--NRLGL-SLQEALDFTHNSFNKKLGQLSLI 160
                P A+ +D GF   R G  S++EA++      +     L+ +
Sbjct: 158 V-EDRPLAVLIDLGFPGGRTGCRSVEEAVELARVVDSTPGVLLAGV 202


>gi|303320183|ref|XP_003070091.1| hypothetical protein CPC735_032820 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240109777|gb|EER27946.1| hypothetical protein CPC735_032820 [Coccidioides posadasii C735
           delta SOWgp]
 gi|320031937|gb|EFW13894.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 466

 Score = 44.7 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 22/143 (15%)

Query: 53  YNAGVQDFFVTSVEEGVKLRLYTPQAR-----IFVLYGIH--PGQEKIIF-------DTN 98
             A      V+++ E  +LR Y  + +     I V+YG+   P     +        +  
Sbjct: 76  EKADTVRLVVSTLAEAEQLRPYLEECKGNGRSIDVIYGLPVQPSNFVRLATLGRDLGELC 135

Query: 99  LIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQ-----EALDFTHNSFNK 152
           +  ++ S+  L F S+     G S     ++DTG+NR GL+       E L   H    +
Sbjct: 136 ITVLVDSLHILPFLSRYRELTGNSLGVFFKLDTGYNRAGLTPDSPQFKELLGAIHKVETE 195

Query: 153 --KLGQLSLIISHLACADDPSSH 173
             +        SH+  +    + 
Sbjct: 196 MPETIYFRGFYSHMGQSYGSDTT 218


>gi|297544519|ref|YP_003676821.1| alanine racemase domain-containing protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842294|gb|ADH60810.1| alanine racemase domain protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 354

 Score = 44.7 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 121/365 (33%), Gaps = 79/365 (21%)

Query: 9   LKIDLTALKNNWHSMNAL--------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L+I+L  L+ N  ++  L         G  +            G  +IA A+   GV+  
Sbjct: 5   LRINLRKLRKNTQTIVNLCEKRNIKVVGVTKVFC---------GIPEIAQAMVKGGVEIL 55

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCG 119
             + ++   KL+       +  +  I   +E I   D +L   I ++       +     
Sbjct: 56  GDSRIKNLKKLQHIPVFKMLIRIPMISEVEEVIKYADISLNSEIDTIKS--LSEEAKKHK 113

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
             H   L VD G  R G+  ++ +         +  +L  + ++L C        +    
Sbjct: 114 KVHEIILMVDLGDLREGMLKEDVIPAVEQIVKLEGIKLRGVGTNLTCYGSVIPTPD---- 169

Query: 180 ERFRTLISHYKGIEASLA-------------SSS-------GILLGPNYHFQLTRPGISL 219
                ++     I+ S+              +SS       G++          R G ++
Sbjct: 170 -----ILEELVEIKNSINKKFDLNVDIVSGGNSSSLYLVQNGLIPKGITQL---RIGEAI 221

Query: 220 YGGTDKINKSHPMQT---VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276
             G +         T   V T E +II +++       SY          ++ V A G  
Sbjct: 222 VLGRETAFGDRIPHTYDDVFTLETQIIELKEKP-----SYPR-------GILGVNAFG-- 267

Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIK-GYMVPILGKI-----TMDMTMFDITDSL-SIE 329
                 +         ++   G+  +  G ++PI   I     + D  + ++T+S    +
Sbjct: 268 ---ERPVYVDRGIMKRAILAIGRQDVNMGDLIPIDSTIELIGASSDHLIVNVTNSPYPYK 324

Query: 330 VGDYI 334
           VGD I
Sbjct: 325 VGDII 329


>gi|161612907|ref|YP_001586872.1| hypothetical protein SPAB_00613 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362271|gb|ABX66039.1| hypothetical protein SPAB_00613 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 367

 Score = 44.7 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 17/167 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N  +  AL  ++     AV K  D     GC + A A++N G+     + 
Sbjct: 6   LEINLRKLEENARTEKALLASSGIDVMAVNKVFD-----GCVETAQAVFNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSH 122
                K+R         +        E ++   ++   ++S P +      +    G +H
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADI--SLNSEPAVLRALSQEAQRQGKTH 117

Query: 123 PYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLAC 166
              L VD G  R G+   E    L+           +L  + ++  C
Sbjct: 118 QVLLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNC 164


>gi|148550169|ref|YP_001270271.1| alanine racemase domain-containing protein [Pseudomonas putida F1]
 gi|148514227|gb|ABQ81087.1| alanine racemase domain protein [Pseudomonas putida F1]
          Length = 228

 Score = 44.7 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 57/196 (29%), Gaps = 30/196 (15%)

Query: 50  PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPVISSV 106
             ++ AGV+DF    ++E +  +         +      I   + K I +      + SV
Sbjct: 44  REIHAAGVRDFGENYLQEALTKQQALSDLP-LIWHFIGPIQSNKTKAIAEHFDW--VHSV 100

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLI 160
            +L    +L     +    L +    N      + G +  +              +L  +
Sbjct: 101 DRLKIAQRLSEQRPAGLAPLNICLQVNVSGEDSKSGCTPADLPALAKAVAALPNLRLRGL 160

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQ 211
           +   A            Q   F +L    +G+   L      L     H           
Sbjct: 161 M---AIPKPTEDRAT--QEAAFASLRKLQEGLGFGLD----TLSMGMSHDLEAAIAQGAT 211

Query: 212 LTRPGISLYGGTDKIN 227
             R G +L+G  D  N
Sbjct: 212 WVRIGTALFGARDYGN 227


>gi|310815799|ref|YP_003963763.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
 gi|308754534|gb|ADO42463.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
          Length = 374

 Score = 44.7 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 94/320 (29%), Gaps = 49/320 (15%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           + ID   L+ N   M AL+G A     +K          IA     AG         EE 
Sbjct: 18  VLIDQPTLQRNIDKMQALAGVAALWPHIKT----HKSPAIAQMQKTAGATGLTAALTEEA 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDT----NLIPVISSVPQLTFYSKLMSCGVSHPY 124
           + +              I P Q   +        L   +         +           
Sbjct: 74  LAMIDAGLGPVTLARPEIDPAQIARLLPHAYAGQLRFTV--DHADHIAAIAAQAEGPVDI 131

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++D G +R+G+                  + + I+SH               ++  R 
Sbjct: 132 LIKIDVGLHRMGIGPDAVGLAALRRTIAAPLRYAGILSH------AGHSYGGQSVDAIRQ 185

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244
           + +    +  +LA++  +  GP          I   G T  +               +  
Sbjct: 186 IAADEVAVMRALAAAVPVDRGP---------TIISIGATPTLLAGQD----------LTG 226

Query: 245 IRKALAGELV-----SYGGQKKLTRDSLIAVAA--IGYAD-------GYPLTLSGLDSEH 290
           I +   G  V     + G       D  +AV A  IG A+       G  +  S   +  
Sbjct: 227 ITEIRPGNYVLLDMTAVGLGIATRDDIAMAVVATVIGTAEDRIVVDTGSKVLTSDRGAHG 286

Query: 291 SPSVFLGGKGFIKGYMVPIL 310
           + +V   G+ ++ G   P++
Sbjct: 287 TSAVAGFGELWLDGATRPLV 306


>gi|154249371|ref|YP_001410196.1| Orn/DAP/Arg decarboxylase 2 [Fervidobacterium nodosum Rt17-B1]
 gi|154153307|gb|ABS60539.1| Orn/DAP/Arg decarboxylase 2 [Fervidobacterium nodosum Rt17-B1]
          Length = 393

 Score = 44.7 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71
           DL  + NN+  +     N +    VK N+      +I   L + G   F V S  E  KL
Sbjct: 19  DLNVIANNYRQLIENINNCKVYYAVKSNS--H--IEIVKFLKDMG-SHFDVASRGEIEKL 73

Query: 72  RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT- 130
                +             E I F   +   + +V       K+     +    +++ T 
Sbjct: 74  LSIGVEPSRMSFGNTIKKIEDIKFAYEVGIRMFAVDAEMEIEKIALVAPNADIYVRISTN 133

Query: 131 GFNR---------LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE- 180
           G             G S+  A++    +  K L  + L     +   +P +   +++   
Sbjct: 134 GMEGDADWPLTRKFGTSVNHAIELVRYAKEKGLNPIGLSFHVGSQNYNPENWRTAIREAS 193

Query: 181 -RFRTLISHYKGIEASLASSSG 201
             F        G+E  + ++ G
Sbjct: 194 IVFEEAKQF--GVEMKMINTGG 213


>gi|299068847|emb|CBJ40088.1| putative diaminopimelate decarboxylase protein (lysA) [Ralstonia
           solanacearum CMR15]
          Length = 413

 Score = 44.7 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 76/239 (31%), Gaps = 37/239 (15%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           DL  L+     ++A L         +K N+       +  A  +  V  + V S+ E V+
Sbjct: 23  DLDHLRERAARLSAMLPPGCELFYAIKANS----DAPVL-AALDGAVAGYEVASLGEVVR 77

Query: 71  LRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPV-ISSVPQLTFYSKLM-SCGVSHPYAL 126
            R     ARI V  G     +++    +  +  + + S  QL     +    G      L
Sbjct: 78  AREVGAHARI-VFGGPGKTDDELQGALERGVELIHVESELQLRRLDAIACRMGRRARVLL 136

Query: 127 QV-------DTGFNR-------------LGLSLQEALDFTHNSFNKKLGQLSLIISH-LA 165
           +V       D G  R              G+      D    +      ++  +  H L+
Sbjct: 137 RVNPNPLAADAGGKRPQGTLTMGGQPTQFGIEEDAVPDLIRLARTLPGVEVVGLHLHALS 196

Query: 166 CADDPSSHVNSVQLERFRTL-ISHYKGIEASLASSSGIL----LGPNYHFQLTRPGISL 219
              D  SH+  ++      L +    G+     +  G +      P++ F   R    L
Sbjct: 197 NNLDADSHLALMRHYLALALRLRREHGLTLDTLNVGGGIGVDYANPSHAFDWRRFCDGL 255


>gi|319792881|ref|YP_004154521.1| alanine racemase domain protein [Variovorax paradoxus EPS]
 gi|315595344|gb|ADU36410.1| alanine racemase domain protein [Variovorax paradoxus EPS]
          Length = 379

 Score = 44.7 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----LI 100
             IA A  +AG Q   V++++E  +  +      I    G+   +     +       L 
Sbjct: 49  IDIARAQRDAGAQGITVSTLKEAEQFFVAGFT-DILYAVGMAQHRLPHALELRRRGCALS 107

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLS 158
            +   V      ++   + G +    ++VDT  +R G+    + L    +  +     L+
Sbjct: 108 IITDGVASARAIAEFGRANGEAFDVLIEVDTDGHRSGIRPDDDVLLEVAHVLHGGGMHLA 167

Query: 159 LIISHLACADDPSSH 173
            +++H   + D  + 
Sbjct: 168 GVMTHAGSSYDLDTP 182


>gi|221633166|ref|YP_002522391.1| Alanine racemase, N-terminal domain family [Thermomicrobium roseum
           DSM 5159]
 gi|221156807|gb|ACM05934.1| Alanine racemase, N-terminal domain family [Thermomicrobium roseum
           DSM 5159]
          Length = 370

 Score = 44.7 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 50/180 (27%), Gaps = 28/180 (15%)

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNS 149
           ++     +   + SV      S+   + G      ++VDTG  R G+   E  L      
Sbjct: 101 RLAERVRVTVAVDSVAVAEPLSRAALARGEQLDVVIEVDTGLRRAGVEPGEPVLRLAREI 160

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209
                 +L  +++H            + +LE    +          + +S+ +L      
Sbjct: 161 IEMPGLRLRGLMTH---EGHAGRASTTEELEGLARMAGEA------MVASAELLRREGIP 211

Query: 210 FQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269
             +                S        A  R+  I +   G  V Y       R   I 
Sbjct: 212 VDVV---------------SVGSTPAAFATTRVPGITEMRPGTYVFYDAA--AFRFGRIG 254


>gi|332705066|ref|ZP_08425151.1| pyridoxal phosphate enzyme, YggS family [Lyngbya majuscula 3L]
 gi|332356243|gb|EGJ35698.1| pyridoxal phosphate enzyme, YggS family [Lyngbya majuscula 3L]
          Length = 240

 Score = 44.7 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 35/227 (15%)

Query: 16  LKNNWHSM-NALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG--- 68
           + +N   +   L  N R  AV   V          +     Y AG++DF    ++E    
Sbjct: 25  ITDNIQQILQQLKPNVRLIAVSKTV--------SVEKMREAYGAGIRDFGENRLQEACAK 76

Query: 69  -VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSH 122
             +L+              +   + K+   T     I SV  L        +        
Sbjct: 77  QEQLKDLEGISWHFI--GHLQKNKAKLAVQTMDW--IHSVDDLKLAQSLNRRANELNKRP 132

Query: 123 PYALQV----DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV- 177
              LQ+    D   N+ G S+++ L+            +  +++ L      +   ++  
Sbjct: 133 KVCLQIKILPDP--NKYGWSVEQLLETLPELEACDSLDIQGLMTILPLELSEAEIFDAFV 190

Query: 178 QLERFRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYG 221
           ++ +F+  ++    +   E S+  S   L        + R G  ++G
Sbjct: 191 EVAKFKEQLNQTTQLNLKEVSMGMSGDYLQAIKAGATMIRLGSKIFG 237


>gi|308175966|ref|YP_003915372.1| hypothetical protein AARI_01650 [Arthrobacter arilaitensis Re117]
 gi|307743429|emb|CBT74401.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
          Length = 396

 Score = 44.7 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 51/182 (28%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA-------PALYNA-------GV 57
           DL A  +N  ++   +                   ++A        AL  A       GV
Sbjct: 27  DLDAFDSNLIALRERASGVPI--------------RVASKSLRVRKALERALDEPGFRGV 72

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI-------IFDTNLIPVISSVPQLT 110
             F   ++ E + L  +  +    V+       E I            +  ++ +  QL 
Sbjct: 73  LCF---TLAEALWLASHGLRD--LVVAYPQTDAEAISRWAASEQAREEVTLMVDTEEQLD 127

Query: 111 FYSKLMSCGVSHPYALQVDTGFN-----RLGL------SLQEALDFTHNSFNKKLGQLSL 159
              ++         AL++D  +      R+G          +  +       +    L  
Sbjct: 128 LIDRIAPKHGPLKVALELDAAYYPSSNWRIGAARSPLTRPAQVAELAAEVHRRPNFILDG 187

Query: 160 II 161
           ++
Sbjct: 188 LM 189


>gi|57234460|ref|YP_181491.1| hypothetical protein DET0758 [Dehalococcoides ethenogenes 195]
 gi|57224908|gb|AAW39965.1| conserved hypothetical protein TIGR00044 [Dehalococcoides
           ethenogenes 195]
          Length = 220

 Score = 44.7 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 74/231 (32%), Gaps = 37/231 (16%)

Query: 16  LKNNWH-SMNALSGNARTAAVVK----DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           +  N    +  L  +    A VK             +I  A   AGV+      + E  +
Sbjct: 5   ITRNIRDILAELPPDVTLEAAVKKRQPA--------EIL-AAIEAGVKIIGHNYLSEAEQ 55

Query: 71  ---LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL----MSCGVSHP 123
              L     +     +  +   + K I    L  V+ +V      S+L            
Sbjct: 56  TYPL--IGEKVEWHFIGKLQSNKCKKIV--RLFSVVETVDSFEIASELNRRAAEIDKVLS 111

Query: 124 YALQVDTGFN--RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS--HVNSVQL 179
             +++++G    + G+  ++ ++           +LS +++     +DP     V  +  
Sbjct: 112 VFIEINSGREEQKSGVLPEDTVELAKRLSGLSNLRLSGLMTMGPALEDPDELRSVFRLTK 171

Query: 180 ERFRTLIS------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
            +F  + +        K +   ++ S  + +       L R G  ++G   
Sbjct: 172 NKFDEIAAMGLPNTELKFLSMGMSGSYKVAVQEGT--NLVRLGTRIFGPRP 220


>gi|302552096|ref|ZP_07304438.1| alanine racemase domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469714|gb|EFL32807.1| alanine racemase domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 364

 Score = 44.3 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 63/206 (30%), Gaps = 40/206 (19%)

Query: 9   LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPA--LY-NAGV 57
           L +D   L++N   M          L  +A+               K A    L   AG 
Sbjct: 14  LVVDPDVLESNIERMAEASRAQGFVLRPHAK-------------AHKCAQIGDLQLRAGA 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK------IIFDTNLIPVISSVPQLTF 111
           +   V ++ E            +F+ Y +    +K      +     L   + S+     
Sbjct: 61  RGLSVATIGEAEAFARVGVD-DLFIAYPVWLDADKAQRLRRLADRIALRVGVESIEGAQR 119

Query: 112 YSKLMS-CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS-------H 163
               +          ++VD+G  R G+    A +    + +  L  ++ + +       H
Sbjct: 120 LGNAVHGSARPVEVLVEVDSGSRRTGVQPHMAGEVGKAAADAGLL-VAGVFTFPGHGYGH 178

Query: 164 LACADDPSSHVNSVQLERFRTLISHY 189
            A A + ++      L +   ++   
Sbjct: 179 DARAREHAARDEERTLGQAAQVLRDL 204


>gi|254502163|ref|ZP_05114314.1| Alanine racemase, N-terminal domain family [Labrenzia alexandrii
           DFL-11]
 gi|222438234|gb|EEE44913.1| Alanine racemase, N-terminal domain family [Labrenzia alexandrii
           DFL-11]
          Length = 387

 Score = 44.3 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 66/225 (29%), Gaps = 49/225 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYN--A 55
           L +DL AL+ N   M   +         K      G              +A  L     
Sbjct: 32  LVLDLDALERNIKKMGDYA---------KA----HGMRHRVHGKMHKSVDVAK-LQERLG 77

Query: 56  GVQDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVP 107
           G     V    V E         +  + V   +  P + K +          +  +  + 
Sbjct: 78  GA--VGVCCQKVSEAEVFARGGIK-DVLVSNQVRDPAKIKRLAQLPKLGARTLVCVDDID 134

Query: 108 QLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI----- 160
            +   S      G +    +++D G  R G++  +A ++  +        + + I     
Sbjct: 135 NVAELSAAAVEAGTTLEVFIEIDCGAGRCGVTTTDAVVEIANAVDAAPGLKFTGIQAYQG 194

Query: 161 -ISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            + HL    +       V +   +  +   K  G+E  L S  G 
Sbjct: 195 AMQHL-DTYEARKEKLDVAIAMVKDAVEGLKAAGLEPELVSGGGT 238


>gi|284034867|ref|YP_003384798.1| alanine racemase domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283814160|gb|ADB35999.1| alanine racemase domain protein [Kribbella flavida DSM 17836]
          Length = 333

 Score = 44.3 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 80/255 (31%), Gaps = 37/255 (14%)

Query: 32  TAAVVKDNAYGLG----CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP---QARIFVLY 84
              V K N YG+G      + + AL   G +   V +  E        P   +  + VL 
Sbjct: 24  IVPVAKGNGYGVGNPRLLAE-SRAL---GARTVAVGTYTE-------VPPDHKDDVVVLS 72

Query: 85  GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALD 144
              P   ++    N+I  +S        + L+S        ++V T   R G+  +E L 
Sbjct: 73  PWRP-FLEVPQGKNVIHTVS------RLADLVSIPAGSRVLIEVQTSMRRHGIGARE-LR 124

Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL 204
            T         +      H        +  N  + +         +     ++      L
Sbjct: 125 HTMLLNALDRIKFEGWSLHFPMGAG-GTSANIREAQELGKAARAVRPGPLWVSHVPPQKL 183

Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
                    R G  L+ G          +   +  A ++ +     GE V Y  + +++ 
Sbjct: 184 ADLGENVKLRMGTGLWLGD---------RGAFSVRATVLDVHSVRRGERVGYRQR-RVSG 233

Query: 265 DSLIAVAAIGYADGY 279
           D  I V + G A G 
Sbjct: 234 DGHILVVSGGTAHGV 248


>gi|217979517|ref|YP_002363664.1| alanine racemase domain protein [Methylocella silvestris BL2]
 gi|217504893|gb|ACK52302.1| alanine racemase domain protein [Methylocella silvestris BL2]
          Length = 383

 Score = 44.3 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 27/178 (15%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +DL     N   M A+          +A++              +IA A   AG    
Sbjct: 31  LILDLDVFDANVARMQAICDANGVNLRPHAKS----------HKSSRIAQAQREAGAIGV 80

Query: 61  FVTSVEEGVKLRLYT-----PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
              ++ E   + +         A +     I    +      + + VI +       S  
Sbjct: 81  CCATINEAEAMAVAGVGGLLITAPLVTDVKISRLCDLCARAPDTMAVIDNADNALALSAA 140

Query: 116 MSCGVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIIS---HLACADD 169
            +   +    + +D G +R G +    A              L  + +   H     D
Sbjct: 141 FAGRPALNVLVDLDIGHHRTGAVDPAAAFKLARMIAATPNLTLQGVQAYGGHFQHIPD 198


>gi|309388999|gb|ADO76879.1| alanine racemase domain protein [Halanaerobium praevalens DSM 2228]
          Length = 234

 Score = 44.3 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIP 101
            +    L  AGV  F    V+E  +    L           +  +   + K +       
Sbjct: 42  AEAVEILNEAGVSYFGENRVQELEEKNEKLIEKGIDIDWHFIGHLQRNKVKYLMRMENCQ 101

Query: 102 VISSVPQLTFYSKLMSCGVS----HPYALQVDTGF--NRLGLSLQEALDFTHNSFNKKLG 155
           +I S+  L    ++           P  ++V+     N+ G+  +E  DF       +  
Sbjct: 102 MIQSIDSLRLAKEVNKRAKKNERIIPVLVEVNMAKDENKFGIMPEEVKDFLKQIKEFENL 161

Query: 156 QLSLIISHLACADDPSS--HVNSVQLERFRTLISHYKGI 192
           ++  +++ L   DD            + +  +  +   +
Sbjct: 162 KIEGLMTILPYLDDSQKLRSYFKQMKKIYDDVCENLMPL 200


>gi|19553808|ref|NP_601810.1| hypothetical protein NCgl2520 [Corynebacterium glutamicum ATCC
           13032]
 gi|62391448|ref|YP_226850.1| hypothetical protein cg2890 [Corynebacterium glutamicum ATCC 13032]
 gi|41326789|emb|CAF21271.1| PUTATIVE AMINO ACID PROCESSING ENZYME [Corynebacterium glutamicum
           ATCC 13032]
          Length = 343

 Score = 44.3 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 77/249 (30%), Gaps = 28/249 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           + ID   L  N   M A +G    A    VK         +IA    +AG +     ++ 
Sbjct: 8   VLIDRERLTANISRMAAHAGAHEIALRPHVKT----HKIIEIAQMQVDAGARGITCATIG 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125
           E            IF+ Y ++     +     +   IS  V  +                
Sbjct: 64  EAEIFAGAGFT-DIFIAYPLYLTDHAVQRLNAIPGEISIGVDSVEMAQATAGLREDIKAL 122

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++VD+G  R G++                 + + + +    +  P +          +  
Sbjct: 123 IEVDSGHRRSGVTA--TASELSQIREALGSRYAGVFTFPGHSYGPGNGE--------QAA 172

Query: 186 ISHYKGIEASLASSSGILL----GPNYHF----QLTRPGISLYGGTDKI--NKSHPMQTV 235
               + +  S+   +G L      P+  F       RPG+ ++  + +I        Q  
Sbjct: 173 ADELQALNNSVQRLAGGLTSGGSSPSAQFTDAIDEMRPGVYVFNDSQQITSGACTEKQVA 232

Query: 236 VTAEARIIL 244
           +T  + ++ 
Sbjct: 233 MTVLSTVVS 241


>gi|284050438|ref|ZP_06380648.1| hypothetical protein AplaP_03077 [Arthrospira platensis str.
           Paraca]
 gi|291569699|dbj|BAI91971.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 223

 Score = 44.3 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 31/229 (13%)

Query: 14  TALKNNWHSMNA-LSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69
            ++      + A +    R  AV   V                Y AGV+DF    V+E  
Sbjct: 3   DSIAERIAQIRAAIPPEVRLVAVTKTV--------SVSAMRLAYEAGVRDFGENRVQEAE 54

Query: 70  K----LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHP- 123
                L+  T      ++  +   +        + I  + S+       +L +     P 
Sbjct: 55  AKQSQLQDLT-DINWHLIGHLQSNKAATAIAHFDWIHSVDSLKLAQRLDRLATEQSRCPR 113

Query: 124 --YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
               +++    N+ G ++ E L         +   +  +++        +        E+
Sbjct: 114 ICLQVKILPDPNKYGWTVPELLADLPQLNVCESLNIQGLMTIPPQGLTENE--TRSVFEQ 171

Query: 182 FRTLISHYKG--------IEASLASSSGILLGPNYHFQLTRPGISLYGG 222
            R L +  +G         E S+  S   LL       + RPG +++G 
Sbjct: 172 TRQLAAQIEGQNWSNIKMQELSMGMSGDYLLAVEAGATMIRPGQTIFGP 220


>gi|197251372|ref|YP_002147319.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197215075|gb|ACH52472.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 367

 Score = 44.3 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 13/165 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N     AL  ++     AV K  D     GC + A A++N G+     + 
Sbjct: 6   LEINLRKLEENARMEKALLASSGIDVMAVNKVFD-----GCVETAQAVFNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G +H  
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQV 119

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLAC 166
            L VD G  R G+   E    L+           +L  + ++  C
Sbjct: 120 LLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNC 164


>gi|299132171|ref|ZP_07025366.1| Orn/DAP/Arg decarboxylase 2 [Afipia sp. 1NLS2]
 gi|298592308|gb|EFI52508.1| Orn/DAP/Arg decarboxylase 2 [Afipia sp. 1NLS2]
          Length = 380

 Score = 44.3 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 63/205 (30%), Gaps = 27/205 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ +      ++R    VK N A      ++   L + G   F   +V E
Sbjct: 23  LVVDLEVVRDNYQTFAKALPDSRVFYAVKANPA-----PEVLSLLASLG-SCFDTATVAE 76

Query: 68  ---GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
               +                    +  I     L   + +V  +    K+         
Sbjct: 77  IEMALA---AGATPDRISFGNTIKKERDIARAYALGIRLFAVDCVAEVEKIARSAPGAKV 133

Query: 125 ALQV--DTG-----FNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             ++  D        +R  G   +   E LD       + +G    + S           
Sbjct: 134 FCRILYDCAGAEWPLSRKFGCEPEMAVEVLDLAKRLRLEPVGISFHVGSQQRKVKAWDRA 193

Query: 174 VNSVQLERFRTLISHYKGIEASLAS 198
           + ++  + FR      +GI  S+ +
Sbjct: 194 L-AMASQVFRDCAE--RGISLSMVN 215


>gi|92118880|ref|YP_578609.1| ornithine decarboxylase [Nitrobacter hamburgensis X14]
 gi|91801774|gb|ABE64149.1| ornithine decarboxylase [Nitrobacter hamburgensis X14]
          Length = 380

 Score = 43.9 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 24/169 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ +      ++R    VK N A      ++   L + G   F   +V E
Sbjct: 23  LVVDLDVVRDNYQTFAKALPDSRVFYAVKANPA-----PEVLSLLASLG-SCFDTATVAE 76

Query: 68  ---GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
               +                    +  I     L   + +V       K+         
Sbjct: 77  IEMALA---AGATPDRVSFGNTIKKERDIARAYALGIRLFAVDCTAEVEKIARAAPGAKV 133

Query: 125 ALQV--DTG-----FNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIIS 162
             ++  D        +R  G   +   + LD       + +G    + S
Sbjct: 134 FCRILYDCAGAEWPLSRKFGCDPEMAVDVLDLAKRLSLEPVGISFHVGS 182


>gi|302387296|ref|YP_003823118.1| alanine racemase domain protein [Clostridium saccharolyticum WM1]
 gi|302197924|gb|ADL05495.1| alanine racemase domain protein [Clostridium saccharolyticum WM1]
          Length = 373

 Score = 43.9 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYG------IHPGQEKIIFDTNLIPVISSVPQ 108
           AG        V E  ++        IF+ Y       I    +       LI  I S+  
Sbjct: 60  AGASGITCAKVSEA-EVMADGGMEDIFIAYPMIGRFRIRRAMDLAERIRRLILAIDSLEG 118

Query: 109 LTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                +      V     +++DTG  R G+ ++ A++        K   L+ I +
Sbjct: 119 AKALDQAASDRDVVLEVRMEIDTGAGRTGVPMERAVELALAVKEMKHLNLTGIFT 173


>gi|91790640|ref|YP_551592.1| alanine racemase-like protein [Polaromonas sp. JS666]
 gi|91699865|gb|ABE46694.1| alanine racemase-like protein [Polaromonas sp. JS666]
          Length = 380

 Score = 43.9 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 8/123 (6%)

Query: 48  IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPV 102
           +   L +AG +   V+++ E            I     + P +             L  +
Sbjct: 51  VTQRLLDAGARGITVSTLREAEYFSERGIT-DILYAVCLSPNKLAHALRLRRQGIRLTVI 109

Query: 103 ISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLI 160
           + SV      + + +         +++D   +R G+     AL     +   +   +  +
Sbjct: 110 VDSVEMALQLNPERIQGDDRLDVLIEIDCDGHRSGVQPDSPALLAIAQALQSQGLAVGGV 169

Query: 161 ISH 163
           ++H
Sbjct: 170 MTH 172


>gi|220921031|ref|YP_002496332.1| alanine racemase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219945637|gb|ACL56029.1| alanine racemase domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 227

 Score = 43.9 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 21/182 (11%)

Query: 52  LYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
              AG + F    V+E       LR   P   + ++  +   + +   +  L  VI S+ 
Sbjct: 49  ALEAGQRLFGENYVQEAKAKWPLLRERYPDVELHMIGPLQSNKAREAVE--LFDVIHSLD 106

Query: 108 QLTFYSKLMS----CGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLII 161
           + +  + L       G      +QV+TG      G+S  E   F     +     ++ ++
Sbjct: 107 RPSLAAALAKEMQRTGRRPRLLVQVNTGDEPQKGGVSPAEVDAFLAACRDTHGLTIAGLM 166

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS--SGILLGPNYHFQLTRPGISL 219
                AD PS H   +     R    H  G+ +   SS  +  +     H    R G ++
Sbjct: 167 CIPPAADPPSPHFALL----ARIAARHGLGLLSMGMSSDFAAAIQMGATH---VRVGTAI 219

Query: 220 YG 221
           +G
Sbjct: 220 FG 221


>gi|47228040|emb|CAF97669.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 621

 Score = 43.9 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 65/229 (28%), Gaps = 31/229 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           L +DL  +K N   ++          V     +K         + A  +     +   V+
Sbjct: 227 LVVDLDKVKRNVQKISEHYEK---MGVQLRPHMKT----HKTLECAEIMTGGTRRCIVVS 279

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT----NLIPVISSVPQLTFYSKL---- 115
           ++ E      +     I   Y +   + +         +L  V+  +       +L    
Sbjct: 280 TLAEASFYADHGFD-DILYAYPLPFDKVERCAALSERLDLFQVL--LDHPDALEQLERRP 336

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSS- 172
           +  G      +++D G  R G+   E  AL            +L+ + +H          
Sbjct: 337 LKDGRRWHVWMKLDCGNGRAGVLHSEPGALKLALAIARTGGVELAGVYAHCGNTYKCRGV 396

Query: 173 ----HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF-QLTRPG 216
                V     +     +   K    +  SS G     ++    + R  
Sbjct: 397 EQIQAVAQETTDLTLQFMEKLKDAGITCRSSIGSTPSCSHPVKDMARLS 445


>gi|221064850|ref|ZP_03540955.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
 gi|220709873|gb|EED65241.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
          Length = 243

 Score = 43.9 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 60/181 (33%), Gaps = 28/181 (15%)

Query: 30  ARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRL---YTPQA- 78
            +  AV K    +A              AG + F    ++E V+    +R       +A 
Sbjct: 29  VQLLAVSKTFGADA--------VREAMLAGQRSFGENYIQEAVEKIAAVRAMQLAGAEAL 80

Query: 79  RIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCG---VSHPYALQVDTGFNR 134
           +   +  I   + +++ +  +    +  +      S     G   ++    + VD G  +
Sbjct: 81  QWHCIGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQGMVRLNVCIQVNVDGGATK 140

Query: 135 LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA 194
            G+  ++AL+           QL  I+S         +     Q    +   S +  I++
Sbjct: 141 SGVLAEQALELAEAMVKLPNLQLRGIMS-----IPDDTPDFEAQCAVHKRAASIFDAIKS 195

Query: 195 S 195
           S
Sbjct: 196 S 196


>gi|222109718|ref|YP_002551982.1| alanine racemase domain-containing protein [Acidovorax ebreus TPSY]
 gi|221729162|gb|ACM31982.1| alanine racemase domain protein [Acidovorax ebreus TPSY]
          Length = 393

 Score = 43.9 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 32/152 (21%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +DL A++ N   M   +         +A+               +IA  L  AG +  
Sbjct: 28  LVVDLDAMERNIQRMAEFAHKHQVRWRPHAKM----------HKSAEIALQLEKAGARGH 77

Query: 61  FVTSVEEGVKLRLYTPQARIF----VLYGIHPGQEKIIFDT------NLIPVISSVPQLT 110
            V  V E   L      A ++    VL G    +   +          L   + S   +T
Sbjct: 78  CVQKVSEAEAL-AAGGVADLYISNEVLGGAKLLRAARLAAQLAARGGRLGIAVDSEEGIT 136

Query: 111 FYSKLMSCGVS---HPYALQVDTGFNRLGLSL 139
             S+ M    S       +++D G  R G+  
Sbjct: 137 RLSEAMRVAGSDAGIDVFVEIDVGQGRCGVPP 168


>gi|298244439|ref|ZP_06968245.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297551920|gb|EFH85785.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 370

 Score = 43.9 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 67/218 (30%), Gaps = 21/218 (9%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF---VLYGIHPGQEKIIFDTN--LIP 101
           ++A  L  AG     V  V E   +        +    ++      +   +   +  +  
Sbjct: 54  ELARRLLAAGAVGGCVAKVSEAEVMAQEGIDDLLITTEIVGKPKLSRLVTLIQHHPRIKV 113

Query: 102 VISS-VPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSL 159
           VI S +      + L    +     + ++ G NR G+   +EAL   H         L  
Sbjct: 114 VIDSFIGAQELNTALHEAQLEIDVLIDLNVGQNRCGVLPGKEALTLAHYCSKLPHLHLVG 173

Query: 160 II---SHLACADDPSSHVNSVQLERFRTLIS-----HYKGIEASLASSSGI----LLGPN 207
           +     HL     P         +  R L        ++G    + ++ G     +    
Sbjct: 174 VQGYEGHLQHIHSPEER-TQRCHQAMRLLTETAAQLRFEGFPIEVVTTGGTGTAEICADY 232

Query: 208 YHFQLTRPGISLYGGTDKINKSHP-MQTVVTAEARIIL 244
                 +PG  ++  TD  N   P     +T  + +I 
Sbjct: 233 GGITEVQPGSFIFMDTDYRNALGPTYANALTILSTVIS 270


>gi|293606155|ref|ZP_06688519.1| alanine racemase domain protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815415|gb|EFF74532.1| alanine racemase domain protein [Achromobacter piechaudii ATCC
           43553]
          Length = 384

 Score = 43.9 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 14/144 (9%)

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKL 115
            V++++E  +         +    G+ PG+   +        +L  V+ S+      +  
Sbjct: 68  AVSTLQEAEQFAAGGVT-DLLYAVGVAPGKLARVEALRKRGVDLTVVVDSLEAARALAAH 126

Query: 116 MS-CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSH 173
           +   G + P  +++D   +R G+    A      +        L  +++H          
Sbjct: 127 VQMAGAAIPALIEIDCDGHRAGVQPGNAEQLVAIARVLHEAHSLRGVMTH------AGES 180

Query: 174 VNSVQLERFRTLISHYKGIEASLA 197
                +E    +    +    S A
Sbjct: 181 YACRSVEAIADMAEQERAAAVSCA 204


>gi|254974063|ref|ZP_05270535.1| putative amino acid racemase [Clostridium difficile QCD-66c26]
 gi|255091462|ref|ZP_05320940.1| putative amino acid racemase [Clostridium difficile CIP 107932]
 gi|255313189|ref|ZP_05354772.1| putative amino acid racemase [Clostridium difficile QCD-76w55]
 gi|255515880|ref|ZP_05383556.1| putative amino acid racemase [Clostridium difficile QCD-97b34]
 gi|255648975|ref|ZP_05395877.1| putative amino acid racemase [Clostridium difficile QCD-37x79]
 gi|260682166|ref|YP_003213451.1| putative amino acid racemase [Clostridium difficile CD196]
 gi|260685765|ref|YP_003216898.1| putative amino acid racemase [Clostridium difficile R20291]
 gi|306519091|ref|ZP_07405438.1| putative amino acid racemase [Clostridium difficile QCD-32g58]
 gi|260208329|emb|CBA60794.1| putative amino acid racemase [Clostridium difficile CD196]
 gi|260211781|emb|CBE02143.1| putative amino acid racemase [Clostridium difficile R20291]
          Length = 354

 Score = 43.9 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 121/361 (33%), Gaps = 58/361 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFV 62
           + RL+ID+  LK+N   ++ +      + + V K         ++I   + + G+     
Sbjct: 2   YPRLEIDIEKLKHNAKLISQMCHERSIKISFVTKSFC----AQKEIVEEICSEGIDHIAD 57

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
           + ++   KL+         ++      + + + +   I   S +  +   ++L  S  + 
Sbjct: 58  SRIQNLKKLQD--INLPKILIRIPMLSELEEVINYCDISFNSELETIKKLNELCESKNII 115

Query: 122 HPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQ 178
           H   L  D G  R G    ++  +        K  ++  I ++L C  A  PS       
Sbjct: 116 HKIVLMFDLGDLREGYFYEEDFFNNVREIVRLKNIEIIGIATNLTCYGAIIPSRENIGRL 175

Query: 179 LERFRTLISHYKGIEASLA---SSSGILL-----GPNYHFQLTRPGISLYGGTDKINKSH 230
           +   + +   + GI   +    +SS I L      P     L      L G      ++ 
Sbjct: 176 VSIAKRMEEKF-GINLEIVSGGNSSSIHLLINNNMPEGITNLRIGESILLGRETAYGENI 234

Query: 231 P--MQTVVTAEARIILIRK---ALAGELV--------SYGGQKKLTRDSLIAVAAIGYAD 277
               Q       +++  ++      GE+          Y  +  L R    A+ AIG   
Sbjct: 235 NGTYQDAFKLICQVVECKEKPSVPIGEIGVDAFRNKPVYEDKGILKR----AIIAIG--- 287

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI 336
                    D      + +     I G         + D  + D++++    ++GD ++ 
Sbjct: 288 -------KQDINIDSLIPIDTDIKILG--------ASSDHMILDVSNTKYDYKLGDNLEF 332

Query: 337 F 337
            
Sbjct: 333 L 333


>gi|305666203|ref|YP_003862490.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Maribacter
           sp. HTCC2170]
 gi|88708194|gb|EAR00431.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Maribacter
           sp. HTCC2170]
          Length = 370

 Score = 43.9 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 61/199 (30%), Gaps = 31/199 (15%)

Query: 1   MHSNEFLRLK-----------IDLTALKNNWHSMNALSGNARTAAV-VKDNAYGLGCEKI 48
           M + ++ RLK           +    ++ N   M  ++G        +K         +I
Sbjct: 1   MQTMDWYRLKDTAEVISPSLMVYPDRIEKNIQLMVKMAGGTEFLRPHIKT----HKMAEI 56

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI---HPGQEKIIFDT---NLIPV 102
                  G++ F   ++ E   L     +  +  +  +        +++      +   +
Sbjct: 57  VNMQMQHGIRKFKCATIAEAELLAQCGAEDILLAMQPVGANMTRYFELMDKYSSSDFSTL 116

Query: 103 ISSVP-QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLI 160
           + +      F       G+     L ++ G +R G+ +  EAL       N        +
Sbjct: 117 VDNQKTANEFIEHSKKRGMKTSLWLDINNGMDRTGIKVGTEALSIYKVINNSPFVVSKGL 176

Query: 161 ISHLACADDPSSHVNSVQL 179
            +          H+ + Q+
Sbjct: 177 HT-------YDGHIRNEQI 188


>gi|330953813|gb|EGH54073.1| alanine racemase [Pseudomonas syringae Cit 7]
          Length = 378

 Score = 43.9 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 80/265 (30%), Gaps = 49/265 (18%)

Query: 12  DLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           D++ +++N   M                 ++   V+              A   AG    
Sbjct: 16  DVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVI-------------QAQIAAGASGV 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN--------LIPVISSVPQLTFY 112
            V++++E            +F    I PG+ +              L   +++   +  +
Sbjct: 63  TVSTLKEAEHCFAEGID-DVFYAVAIAPGKLEQALRLRRKGCRLSLLTDSVAAARAIVVF 121

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPS 171
            +           +++D   +R GL++ +A L     +      QL  +++H   + D  
Sbjct: 122 GQAHDERFD--VWIEIDCDGHRSGLTVDDASLVEVARTLVDGGMQLRGVMTHAGSSYDLD 179

Query: 172 SHVNSVQLERFRTLI----------SHYKGIEASLASSSGILLGPNYHFQL-TRPGISLY 220
           +      L      +          +     + S+ S+   L   + H     R G+ ++
Sbjct: 180 TPAALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTALSAQSLHGVTEVRAGVYVF 239

Query: 221 --GGTDKINKSHPMQTVVTAEARII 243
                  I      +  ++    +I
Sbjct: 240 FDLVMHNIGVCQADELALSVLTTVI 264


>gi|110635537|ref|YP_675745.1| hypothetical protein Meso_3208 [Mesorhizobium sp. BNC1]
 gi|110286521|gb|ABG64580.1| Protein of unknown function UPF0001 [Chelativorans sp. BNC1]
          Length = 225

 Score = 43.9 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 13/150 (8%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRLYT 75
                  S +    AV K  A     ++I P    AG + F    V+E       L+   
Sbjct: 19  VREAGRASKDVALVAVSKTFA----ADEILPV-IEAGQRVFGENRVQEAQGKWPGLKEAF 73

Query: 76  PQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFN 133
           P   + ++  +   + K      ++I  +         +  M   G      +QV+TG  
Sbjct: 74  PDIELHLIGPLQSNKAKEAVALFDVIETVDREKIAAALAAEMEKQGRRLRLYVQVNTGLE 133

Query: 134 R--LGLSLQEALDFTHNSFNKKLGQLSLII 161
               G+  +E   F          ++  ++
Sbjct: 134 PQKAGIDPRETAAFVARCREVHGLEIEGLM 163


>gi|124485458|ref|YP_001030074.1| diaminopimelate decarboxylase [Methanocorpusculum labreanum Z]
 gi|124362999|gb|ABN06807.1| diaminopimelate decarboxylase [Methanocorpusculum labreanum Z]
          Length = 433

 Score = 43.9 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 26/132 (19%)

Query: 55  AGVQDFFVTSVEE---GVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVPQL 109
           AG   F   S+ E    ++       A I +  G        +   + +++  + SV +L
Sbjct: 81  AGADIF---SLGEMRAALE---AGIPAGILLFNGSSKTEADLRAAIEKDIMISVDSVDEL 134

Query: 110 TFYSKLMSC-------------GVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKL 154
                +                 +  P   ++ TG      G+  +  L+    + + + 
Sbjct: 135 RQIDAITKELKKTAKIGFRVNPAIEVPTHPKIATGIKNSKFGIPAEMILEAYREALSMEY 194

Query: 155 GQLSLIISHLAC 166
                +  H+  
Sbjct: 195 VVPVGMHCHIGS 206


>gi|316934654|ref|YP_004109636.1| alanine racemase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315602368|gb|ADU44903.1| alanine racemase domain protein [Rhodopseudomonas palustris DX-1]
          Length = 360

 Score = 43.9 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 78/264 (29%), Gaps = 50/264 (18%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           L ID+  +++N   + AL   A    V     +K          +A    +AG +   +T
Sbjct: 18  LVIDMDRVEHNIARIQALCDAA---GVANRPHIKT----HKSPLLAKMQIDAGAR--GIT 68

Query: 64  S--VEEGVKLRLYTPQARIFV------------LYGIHPGQEKIIFDTNLIPVISSVPQL 109
              + E   +        I +            L  +H      +   N + +       
Sbjct: 69  CQKLGEAEVMADAGID-DILISYNLIGEEKMARLGALHERAAMTVAADNAVVI------A 121

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACAD 168
              +     G      ++ DTG  R G+    EA+         +       +       
Sbjct: 122 GLPAAAARAGRPLGVVVECDTGRQRAGVETPAEAVALARMIAASEGLSFKGFM---LYPT 178

Query: 169 DPSSHVNSVQLERFRTLISHYK--GIEASLASSSGILLGPNYHF----QLTRPGISLYGG 222
           +            F   ++  +  G++A++ S+ G     N          RPG  +Y  
Sbjct: 179 EDDWPRTQR---FFDEALAGVRAHGLDAAMVSTGGSPNLKNLGQLKGATEHRPGTYIYND 235

Query: 223 TDKINK--SHPMQTVVTAEARIIL 244
             ++    +      +T  + ++ 
Sbjct: 236 RMQVAAGVASWNDCALTVYSTVVS 259


>gi|307727882|ref|YP_003911095.1| alanine racemase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307588407|gb|ADN61804.1| alanine racemase domain protein [Burkholderia sp. CCGE1003]
          Length = 376

 Score = 43.9 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLI 100
           E++  A   AG +   V++++E  +      +  I    G+ P +            +L 
Sbjct: 46  EQVVRAQLAAGARGITVSTLKEAEQFFAAGIR-DIVYAVGMAPTKLPQALALRRQGCDLK 104

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLS 158
            V  SV               +    +++D   +R G++ ++ L  T  +     G  + 
Sbjct: 105 IVADSVACAEAIVAFGRRYDEAFEVWIEIDVDGHRSGIAPEDDLLITVAATLSNGGMYVG 164

Query: 159 LIISHLACADDPSSH 173
            +++H   + D  +H
Sbjct: 165 GVLAHAGSSYDYDTH 179


>gi|330505234|ref|YP_004382103.1| alanine racemase domain-containing protein [Pseudomonas mendocina
           NK-01]
 gi|328919520|gb|AEB60351.1| alanine racemase domain-containing protein [Pseudomonas mendocina
           NK-01]
          Length = 420

 Score = 43.9 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 96  DTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFT-HNSFNKK 153
           D  L  +I S  +L  Y++L +  G     AL++D G  R G +  +AL           
Sbjct: 146 DRQLTWLIDSRQRLQQYAELATALGRPLRIALEIDIGLERGGFATPQALAQAMQQLGQLP 205

Query: 154 LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEAS 195
             QL  ++     A    + +   Q+  F    + Y+   AS
Sbjct: 206 GLQLQGLMG--YDAHVAHNPLWQGQINAFSEADTRYRQFIAS 245


>gi|56461074|ref|YP_156355.1| TIM-barrel fold family protein [Idiomarina loihiensis L2TR]
 gi|56180084|gb|AAV82806.1| Predicted enzyme with a TIM-barrel fold [Idiomarina loihiensis
           L2TR]
          Length = 240

 Score = 43.9 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 74/238 (31%), Gaps = 46/238 (19%)

Query: 16  LKNNWHSMNA----------LSGNARTAAV-VKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           + NN   +               + +  AV  K        E I  A   AG   F    
Sbjct: 13  ITNNLAEIRQQLQILSEESPHQQSVKLLAVSKK-----HSLEAI-KAAIAAGQMHFGENY 66

Query: 65  VEEGVK----LRLYTPQARI---FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
           V+E V     L+  T    +   F+   +   + K I        + SV +     +L  
Sbjct: 67  VQEAVAKITQLKEQT-TDPVQWHFI-GPVQSNKTKDIAQHFDW--VQSVEREKIARRLNE 122

Query: 118 CGVSHP------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL-ACADDP 170
                         + +D   N+ GL+ ++         N    +L  +++ L A   + 
Sbjct: 123 QRPDDSQQLNLLLQVNIDDDDNKSGLAPEQVEALAEYVMNCPKLKLRGLMTILKAGTTED 182

Query: 171 SSHVNSVQLERFRTLISHYKGIEA---SLASSS----GILLGPNYHFQLTRPGISLYG 221
               +  Q+ +    +    G +    S+  S      +L G      + R G +++G
Sbjct: 183 EREKSFQQMYKLYQQLQQTYGEQIDTLSMGMSGDMRQAVLEGA----NMVRIGTAIFG 236


>gi|257095145|ref|YP_003168786.1| alanine racemase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047669|gb|ACV36857.1| alanine racemase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 229

 Score = 43.5 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 28/161 (17%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP 101
            +       AG + F  + ++EG+    +LR          L          +      P
Sbjct: 40  AECLREAAAAGQRAFGESYLQEGIDKVAELRAMG-------LEWHF---IGTLQANKTRP 89

Query: 102 V------ISSVPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNS 149
           V      + S+ +L    +L +        +S    + V    ++ G+S  EA    H  
Sbjct: 90  VAETFDWVHSLDRLRVAERLSAQRPLSLPSLSVCLQVNVSGEASKGGVSPAEAPALAHAV 149

Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
                 +L  +++    A             R R L    +
Sbjct: 150 ARLPKLRLRGLMA--IPAPSDDFVEQRRPFRRLRELSEQLR 188


>gi|299532897|ref|ZP_07046284.1| hypothetical protein CTS44_18927 [Comamonas testosteroni S44]
 gi|298719121|gb|EFI60091.1| hypothetical protein CTS44_18927 [Comamonas testosteroni S44]
          Length = 240

 Score = 43.5 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 28/181 (15%)

Query: 30  ARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRL---YTPQA- 78
            +  AV K    +A              AG + F    ++E V+    +R       QA 
Sbjct: 29  VQLLAVSKTFGADA--------VREAVLAGQRSFGENYIQEAVEKIAAVRAMQLAGGQAL 80

Query: 79  RIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCG---VSHPYALQVDTGFNR 134
           +   +  I   + +++ +  +    +  +      S     G   ++    + VD G  +
Sbjct: 81  QWHCIGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQGMARLNVCIQVNVDGGATK 140

Query: 135 LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA 194
            G+  ++AL+           QL  I+S         +     Q    +   + ++ I+A
Sbjct: 141 SGVMAEQALELAQAMVKLPNLQLRGIMS-----IPDDAPDFEAQCVVHKKAKAVFESIKA 195

Query: 195 S 195
           S
Sbjct: 196 S 196


>gi|330507768|ref|YP_004384196.1| diaminopimelate decarboxylase [Methanosaeta concilii GP-6]
 gi|328928576|gb|AEB68378.1| diaminopimelate decarboxylase [Methanosaeta concilii GP-6]
          Length = 427

 Score = 43.5 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 24/180 (13%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEEGVKLRLY 74
           L+ N    +    +A     VK N   L   ++A       G   F   S  E   +RL 
Sbjct: 41  LRENIRRYHRAFPDAEKYFAVKANG-NLAILQVA--AQEGMGADIF---SAGELSLVRLA 94

Query: 75  TPQARIFVLYGIHPGQEKIIF--DTNLIPVISSVPQLTFYSKLMSC-------------G 119
                + +  G    ++  I      +   + S  +L   ++                  
Sbjct: 95  GIPRDMILFNGNSKSEKDHIAALQAGVRISVDSNEELEHLARTARNLDSEAEILFRVNPN 154

Query: 120 VSHPYALQVDTGF--NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           VS     ++ TG   ++ G+  ++       +   +  +   +  H+      ++     
Sbjct: 155 VSPKTHPKIATGLRSSKFGIPAEQVAGTYKRAMELEGIKPVGLHCHIGSQILDTAPFAEA 214


>gi|168237383|ref|ZP_02662441.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736497|ref|YP_002115429.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194711999|gb|ACF91220.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289614|gb|EDY28977.1| amino acid racemase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 367

 Score = 43.5 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 13/165 (7%)

Query: 9   LKIDLTALKNNWHSMNALSGNART--AAVVK--DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L+I+L  L+ N  +   L  ++     AV K  D     GC + A A++N G+     + 
Sbjct: 6   LEINLRKLEENARTEKTLLASSGIDVMAVNKVFD-----GCVETAQAVFNGGITVIAESR 60

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
                K+R         +        E ++   ++      V       +    G +H  
Sbjct: 61  TYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQV 119

Query: 125 ALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLAC 166
            L VD G  R G+   E    L+           +L  + ++  C
Sbjct: 120 LLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNC 164


>gi|121602346|ref|YP_988440.1| hypothetical protein BARBAKC583_0102 [Bartonella bacilliformis
           KC583]
 gi|120614523|gb|ABM45124.1| conserved hypothetical protein TIGR00044 [Bartonella bacilliformis
           KC583]
          Length = 226

 Score = 43.5 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 52  LYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSV 106
           L  AG   F    V+E  +    LR       + ++  +   +        ++I  +   
Sbjct: 50  LLQAGQSCFAENRVQEAAEKWPYLRQQFSPIELHLIGPLQSNKTAEAVKIFDVIQTVDRE 109

Query: 107 PQLTFYSKLMSCGVSH-PYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLII 161
                 S+ M     H P  +QV+ G      GL+ ++ +DF  +  N     +  ++
Sbjct: 110 KIAKSLSEEMHKQKKHFPCYVQVNIGLEPQKSGLAPEDVVDFVAHCKNHYGLDIVGLM 167


>gi|294508466|ref|YP_003572524.1| Alanine racemase [Salinibacter ruber M8]
 gi|294344794|emb|CBH25572.1| Alanine racemase [Salinibacter ruber M8]
          Length = 388

 Score = 43.5 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 64/207 (30%), Gaps = 31/207 (14%)

Query: 9   LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L I+   L+ N  +M A        L  + +T               IA      G    
Sbjct: 11  LLIEQARLQANLAAMQATANANDVTLRPHVKT----------HKSVAIAEQQQQRGATGL 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGI--HPGQE---KIIFDTNLIPVISSVPQLTFYSKL 115
            V +V E            + V Y +   P  E    +     L   + ++      S +
Sbjct: 61  TVATVHEAEAFVAAGFD-DVRVAYPVVGRPKHERLRALRAAATLSFTVDTMAGADQASAV 119

Query: 116 MS-CGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD-P 170
            +         ++VD G  R G+       A+    +  +    QL+ I++H   A D P
Sbjct: 120 HAGADNPVEVLMEVDVGHGRCGVHWADDAAAVVLAQHIASLPGLQLAGILTHAGQAYDGP 179

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLA 197
           S    +      R    H +    S+A
Sbjct: 180 SDDETAK--GALRRAARHERDRMLSVA 204


>gi|115522420|ref|YP_779331.1| hypothetical protein RPE_0392 [Rhodopseudomonas palustris BisA53]
 gi|115516367|gb|ABJ04351.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
           BisA53]
          Length = 221

 Score = 43.5 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLI 100
            E I P L  AG + F    V+E       LR   P   + ++  +   + K      L 
Sbjct: 41  AEAIVPVLQ-AGQRAFGENRVQEAKAKWPALRQSYPDTVLHLIGPLQSNKAKDAAA--LF 97

Query: 101 PVISSVPQLTFYSKLMSC----GVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKL 154
             I SV + +    L              +Q++TG      G++  EA DF         
Sbjct: 98  DAIHSVDRDSLAQALAKELPLHNRLIELFVQLNTGEEPQKAGVAPAEADDFLKRCREHHG 157

Query: 155 GQLSLII 161
            +++ ++
Sbjct: 158 LEIAGLM 164


>gi|312883710|ref|ZP_07743433.1| alanine racemase domain-containing protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368627|gb|EFP96156.1| alanine racemase domain-containing protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 368

 Score = 43.5 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 25/168 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVV----KDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L +DL  +  N  +M     +      +    K          IA    +AG +   V  
Sbjct: 11  LLVDLDKMNQNIETMQQRINDLGLM--LRPHTKA----HKSPIIAQRQIDAGAKGICVAK 64

Query: 65  VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF----------DTNLIPVISSVPQLTFYSK 114
           + E   +      + I +        EK I           D   I VI     +    +
Sbjct: 65  LGEAEVMAEGGI-SDILI--TTPIAGEKKIQRLINLYLKYPDFRFIQVIDHHDHVAKIGQ 121

Query: 115 -LMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLI 160
             +  GV     ++V++G  R G+ + E  L+      N +    + I
Sbjct: 122 FALKAGVCVELMIEVESGQQRCGVDVGEPLLELIRAIKNTQGVSYAGI 169


>gi|307297898|ref|ZP_07577702.1| alanine racemase domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915984|gb|EFN46367.1| alanine racemase domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 217

 Score = 43.5 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 76/225 (33%), Gaps = 31/225 (13%)

Query: 16  LKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYN---AGVQDFFVTSVEEGV-K 70
           +  N   + +   +     A  K         + A  +     +G++D     V+E   K
Sbjct: 2   IAENVKRLRSEIPDYVTIVAASK--------TRTASEILEILESGLKDVGENYVQEAEGK 53

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMS-CGVSHPYALQV 128
                 +AR   +  +   + K   +  ++I  + S        K  S      P  ++V
Sbjct: 54  FEAIGNKARWHCIGHLQRNKVKRAIEIFDIIQTVDSFKLAEEIDKRCSYLSKKMPVMVEV 113

Query: 129 DTGF--NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER--FRT 184
           ++G   N+ G+  +  L         K   +  +++     +DP     S++L R  F  
Sbjct: 114 NSGKEENKAGVLPENVLQLITEISPLKNIAVVGLMTMGPFTEDPEEIRPSLRLTRRLFEE 173

Query: 185 LIS------HYKGIEASLASSS--GILLGPNYHFQLTRPGISLYG 221
           +          K +   +++S    I  G      + R G  ++G
Sbjct: 174 ISKEKIEGVEMKYLSMGMSNSYRVAIEEGS----NMVRLGTIIFG 214


>gi|258570565|ref|XP_002544086.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237904356|gb|EEP78757.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 396

 Score = 43.5 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 21/141 (14%)

Query: 73  LYTPQARIFVLY-GIHPGQEKIIF-------DTNLIPVISSVPQLTFYSKLMS-CGVSHP 123
               +A I +    + P     +        + ++  ++ S+  L F S+     G +  
Sbjct: 73  QVGDKADIVIYGLPVQPSSFPRLAGLGTSLGEWSITVLVDSLYILPFLSRYRELTGYALG 132

Query: 124 YALQVDTGFNRLGLSLQ-----EALDFTHNSFNKKL--GQLSLIISHLACADDPSS---- 172
             +++DTG++R G+S       E L+  +    ++     L    SH+  +    +    
Sbjct: 133 VFVKLDTGYSRAGVSPDSPQFRELLEAIYKMEKEEPTTINLRGFYSHMGHSYSSDTTSEA 192

Query: 173 -HVNSVQLERFRTLISHYKGI 192
               ++++ER  T       +
Sbjct: 193 LDYLTMEIERCETAAVQASDL 213


>gi|218706971|ref|YP_002414490.1| putative amino acid racemase [Escherichia coli UMN026]
 gi|293406959|ref|ZP_06650883.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298382701|ref|ZP_06992296.1| yhfX protein [Escherichia coli FVEC1302]
 gi|300896537|ref|ZP_07115059.1| alanine racemase protein [Escherichia coli MS 198-1]
 gi|218434068|emb|CAR14985.1| putative amino acid racemase [Escherichia coli UMN026]
 gi|291425770|gb|EFE98804.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298276537|gb|EFI18055.1| yhfX protein [Escherichia coli FVEC1302]
 gi|300359610|gb|EFJ75480.1| alanine racemase protein [Escherichia coli MS 198-1]
          Length = 387

 Score = 43.5 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 65/237 (27%), Gaps = 33/237 (13%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVI 103
           A  L   G     V   +E   +R       +      V    H   + +   T++I V 
Sbjct: 70  AEKLLALGYSGIVVVDYKEARVMRRAGL--PVAHQGHLVQIPCHQVADAVEQGTDVITVF 127

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQV--DTGF----NRLGLSLQEALDFTHNSFNKKLGQL 157
           +        +  +  G      L+V  D  F       G       +            L
Sbjct: 128 TLDKAWEVSAAAVKAGRVQSVLLKVYSDDDFLYPGQESGFVQHSLHEVVAEIKKLPGLHL 187

Query: 158 SLIISHLACADDPSSHVNSV-------------QLERFRTLISHYKGIEASLASSSGILL 204
           + + +H  C     +   ++             QL +    I       A+  +S  +L 
Sbjct: 188 AGL-THFPCLLWDEAAGKALPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCTSLPLLA 246

Query: 205 GPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
              Y      PG +L G      +   P +  +   + I        G+   YGG  
Sbjct: 247 --EYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISH---HFRGDSYCYGGGY 298


>gi|182412516|ref|YP_001817582.1| Orn/DAP/Arg decarboxylase 2 [Opitutus terrae PB90-1]
 gi|177839730|gb|ACB73982.1| Orn/DAP/Arg decarboxylase 2 [Opitutus terrae PB90-1]
          Length = 379

 Score = 43.5 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 31/177 (17%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDN---AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           +D  AL+  + +        +    VK N   A       I   L+  G   F V S+ E
Sbjct: 21  VDHDALRKAYRTFRKHLPRIQVYYAVKANPDPA-------IVRTLFQEGAS-FDVASMPE 72

Query: 68  ------------GVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSK 114
                         + R      +I       P +  + +     +    ++ ++    +
Sbjct: 73  FMIVHENIKRLPAKE-RQEWIWDKIIYANPTKPTETLEELNQYKPLVTFDNLEEIQKIKQ 131

Query: 115 LM-SCGVSHPYALQVDTGF----NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
              + G+     +          ++ G S  EA+D    +    LG +  I  H+  
Sbjct: 132 HAPNAGLVLRLKVPNTGAMVELSSKFGASPGEAVDLILEADKAGLG-VEGISFHVGS 187


>gi|33865194|ref|NP_896753.1| hypothetical protein SYNW0660 [Synechococcus sp. WH 8102]
 gi|33638878|emb|CAE07175.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 220

 Score = 43.5 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 60/217 (27%), Gaps = 27/217 (12%)

Query: 25  ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV----KLRLYTPQARI 80
           AL   A+  AV K    G     +   L  +G + F  + ++E +    +L         
Sbjct: 15  ALPATAQLLAVSK----GHPAA-VIRELAGSGQRAFGESRLQEALPKQEQLAD------- 62

Query: 81  FVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP------YALQVDTG 131
             L     G+    K+       PVI SV  L    ++                +++   
Sbjct: 63  LALQWHFIGRLQSNKVRSVVRAFPVIHSVDSLPLAQRVSRIAGEEEQWPEVLLQVKLRPD 122

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191
            N+ G    E L             +  +++      D        Q    R L    + 
Sbjct: 123 TNKGGFLRDELLSAWTELAALPSMTVIGLMTMAPMGCDADDRRALFQ--ECRELADQLEL 180

Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
            E S+  S              R G  L+G       
Sbjct: 181 RECSMGMSGDWQDAAAAGSTWLRLGSVLFGPRPSAPP 217


>gi|256828939|ref|YP_003157667.1| alanine racemase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578115|gb|ACU89251.1| alanine racemase domain protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 382

 Score = 43.5 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----LIPVISSVPQLTFYSKLM 116
           V+++ E  +L  +  +  I    GI P +   +         L  ++ SV Q    +K  
Sbjct: 68  VSTLREAEELAAHGVK-DITYAVGISPDKLTRVQKLRAGGIALTILLDSVEQALAVAKAS 126

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADD 169
                 P  +++D   +R G+  Q+  L            +L  +++H   + +
Sbjct: 127 DPKDPIPVLIELDCDGHRSGVKPQDATLLAAIAQALAPRARLEGVLTHAGESYE 180


>gi|302391655|ref|YP_003827475.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302203732|gb|ADL12410.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 232

 Score = 43.5 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 17/163 (10%)

Query: 44  GCEKIAPALYNAGVQDFFVTSVEEGVKLRLY--TPQARI--FVLYGIHPGQEKIIFDTNL 99
           G E+I   +  A V D   + V+E   LR        +I   ++  +   + K I     
Sbjct: 39  GIEEI-KEVIEADVVDLGESRVQE---LRDKYDNISQKINWHMIGHLQRNKVKYIMRMER 94

Query: 100 IPVISSVPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
             +I S+  +    K+          ++    + V    N+ GL  +E +D+       +
Sbjct: 95  CNLIHSMDSMRLAKKINKRAGMADRVMNVLVQINVAGDENKFGLEPEETIDYLRKVAEFE 154

Query: 154 LGQLSLIISHLACADDPS--SHVNSVQLERFRTLI-SHYKGIE 193
             Q+  +++ +   DD            E F  +  +    IE
Sbjct: 155 NLQVKGLMTMVPYVDDTEQVRPYFRELKELFEEVKRAEIPNIE 197


>gi|254501830|ref|ZP_05113981.1| conserved hypothetical protein TIGR00044 [Labrenzia alexandrii
           DFL-11]
 gi|222437901|gb|EEE44580.1| conserved hypothetical protein TIGR00044 [Labrenzia alexandrii
           DFL-11]
          Length = 223

 Score = 43.5 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 30/211 (14%)

Query: 28  GNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV----KLRLYTPQARI 80
           G     AV K    +A              AG + F    V+E +    +LR       +
Sbjct: 27  GAVTLIAVSKTFEADA----IRP----ALEAGHRVFGENRVQEAMGKWPELRGSYDGIEL 78

Query: 81  FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS----CGVSHPYALQVDTGFNR-- 134
            ++  +   + K    T    VI +V +      L +     G   P  +QV+TG     
Sbjct: 79  HLIGPLQSNKAKEAVAT--FDVIHTVDRQKIAKALKAEMDKQGRDLPCFIQVNTGEEPQK 136

Query: 135 LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI-E 193
            G+  +E   F     +     +  ++      + P  H   +Q       I+   G+ +
Sbjct: 137 AGIPPKEVDQFVKECKDTVGLNIVGLMCIPPVDEAPGEHFALLQK------IAARNGLSQ 190

Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
            S+  SS       +     R G +++G  D
Sbjct: 191 ISMGMSSDYETAVGFGATHVRVGSAIFGSRD 221


>gi|260429750|ref|ZP_05783726.1| metal-activated pyridoxal enzyme [Citreicella sp. SE45]
 gi|260419233|gb|EEX12487.1| metal-activated pyridoxal enzyme [Citreicella sp. SE45]
          Length = 387

 Score = 43.1 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 62/225 (27%), Gaps = 49/225 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYN--A 55
           L +DL AL+ N   M   +         K      G              +A  L     
Sbjct: 32  LVLDLDALERNIKVMGDYA---------KA----HGMRHRVHGKMHKSVDVAK-LQEKLG 77

Query: 56  GVQDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDT-----NLIPVISSVP 107
           G     V    V E         +  + V   +  P +   +         +I  +  V 
Sbjct: 78  GA--VGVCCQKVSEAEVFARGGIK-DVLVSNQVRDPQKIDRLAQLPKLGGRIIVCVDDVE 134

Query: 108 QLTFYSKLM-SCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI----- 160
            +   S+     G      +++D G  R G+ S    ++             + I     
Sbjct: 135 NVAELSEAAVRHGTELDIFIEIDCGAGRCGVSSTPAVVEIAKAVEAAPNLNFAGIQAYQG 194

Query: 161 -ISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            + H+  + +         +      ++  K  GI+  L S  G 
Sbjct: 195 AMQHI-DSYEARKEKLDTAIAMVEDAVAGLKAEGIDCELVSGGGT 238


>gi|83950233|ref|ZP_00958966.1| threonine aldolase, low-specificity [Roseovarius nubinhibens ISM]
 gi|83838132|gb|EAP77428.1| threonine aldolase, low-specificity [Roseovarius nubinhibens ISM]
          Length = 387

 Score = 43.1 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 65/223 (29%), Gaps = 45/223 (20%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYNAGV 57
           L +DL AL+ N   M   + +              G              +A   +  G 
Sbjct: 32  LVLDLDALERNIKKMGDYAKS-------------HGMRHRVHGKMHKSVDVAKLQHELG- 77

Query: 58  QDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVPQL 109
               V    V E         +  I V   +  P +   +         +I  +  +  +
Sbjct: 78  GAVGVCCQKVSEAEVFARGGIK-DILVSNQVRDPAKIDRLAQLPKFGARVIVCVDDIDNV 136

Query: 110 TFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI------I 161
              S+     G +    +++D G  R G+   EA +D           + S I      +
Sbjct: 137 AELSEAAQKHGTTLDIFIEIDCGAGRCGVVTTEAVIDIAKAVDAAPALRFSGIQAYQGAM 196

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            H+  + +       V +   +  +   K  G+   L S  G 
Sbjct: 197 QHI-DSYEARKEKLDVAIAMVQDAVDGLKAEGLSCELVSGGGT 238


>gi|115360046|ref|YP_777184.1| alanine racemase domain-containing protein [Burkholderia ambifaria
           AMMD]
 gi|115285334|gb|ABI90850.1| alanine racemase domain protein [Burkholderia ambifaria AMMD]
          Length = 376

 Score = 43.1 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 30/180 (16%)

Query: 11  IDLTALKNNWHSMNAL-----------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ID+  ++NN   M A                +   VV  +A      +IA     AG Q 
Sbjct: 13  IDVDRMRNNIARMQAHLDALGVKFRPHVKTTKCQQVV--DA------QIA-----AGAQG 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT--NLIPVISSVPQLTFYSKL 115
             V++++E  +      +  ++ +  I    GQ   +     +L  V  S+      ++ 
Sbjct: 60  ITVSTLKEAEQFFAAGVRDIVYAVGMIPAKLGQALALRRQGCDLKIVADSLETANAIAEF 119

Query: 116 -MSCGVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSH 173
               G      ++VD   +R G+   +AL      +       L  +++H   + +  + 
Sbjct: 120 GREHGERFDVWIEVDVDGHRSGIRPDDALLIDVGRALVDGGMALGGVLAHAGSSYEYDTR 179


>gi|119513658|ref|ZP_01632662.1| hypothetical protein N9414_22978 [Nodularia spumigena CCY9414]
 gi|119461687|gb|EAW42720.1| hypothetical protein N9414_22978 [Nodularia spumigena CCY9414]
          Length = 222

 Score = 43.1 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 76/222 (34%), Gaps = 31/222 (13%)

Query: 20  WHSMNA-LSGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEG----VKL 71
             ++ A L  + R  AV K           E I  A YNAG++DF    ++E      +L
Sbjct: 9   ITTIRASLPPSVRLIAVSKTFPA-------EDI-RAAYNAGIRDFGENRIQEAASKQAEL 60

Query: 72  RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA------ 125
           +   P      + G+   + K   +  L   I SV  L    +L                
Sbjct: 61  QDL-PDITWHFIGGLQSNKAKKALE--LFDWIHSVDNLKLAQRLNQLAQQLGVTPQVCLQ 117

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS------SHVNSVQL 179
           +++    N+ G ++ E L         K  Q+  +++      + +      +  + +  
Sbjct: 118 VKILPDPNKSGWTVPELLADLDALNQCKNLQIQGLMTIPPLGLNDTEIISVFNATHKLAQ 177

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
           E      SH K  E S+  S    L       + R G  L+G
Sbjct: 178 EIEEQNWSHLKMPELSMGMSGDYQLAVQAGATMVRLGTILFG 219


>gi|312115572|ref|YP_004013168.1| alanine racemase domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220701|gb|ADP72069.1| alanine racemase domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 229

 Score = 43.1 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 18/203 (8%)

Query: 27  SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFV 82
             + +  AV K        E I P L    V  F    ++E ++    LR   P+A + V
Sbjct: 35  PASVKLVAVTKTF----DAEHIRPVLRQGHV-LFGENRIQEAMRKWPPLREEFPRAELHV 89

Query: 83  LYGIHPGQEKIIFDT-NLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNR--LGLS 138
           +  I   + +      + I  +         + ++   G +    +QV+ G      G++
Sbjct: 90  IGPIQTNKAREAVAFFDCIETVDRPKLAAALAQEIQKQGRAPKLFVQVNIGEEPQKAGIA 149

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198
             EA  F      +    ++ ++      DDP         E+   L      ++ S+  
Sbjct: 150 PDEAAAFVRQCEREYGLSIAGLMCIPPFDDDP-VPF----FEKMAALRKELGLLDLSMGM 204

Query: 199 SSGILLGPNYHFQLTRPGISLYG 221
           S            L R G +++G
Sbjct: 205 SGDFEAAIAAGATLVRVGSAIFG 227


>gi|153008428|ref|YP_001369643.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151560316|gb|ABS13814.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 250

 Score = 43.1 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 24/198 (12%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVK----LRL--YTPQARIFVLYGIHPGQEKIIFDT- 97
            E+I P L +AG + F    V+E       LR      +     L+ I P Q     D  
Sbjct: 64  AEEIRPVL-DAGQRVFGENRVQEAQAKWPGLRDDYSGIE-----LHLIGPLQSNKAADAV 117

Query: 98  NLIPVISSVPQLTFYSKLM----SCGVSHPYALQVDTGFN--RLGLSLQEALDFTHNSFN 151
            L  VI +V +    + L         +    +QV+TG    + G++ +EA+ F      
Sbjct: 118 ALFDVIETVDREKIAAALAVEIKKQNKAPKLYVQVNTGLEEQKAGIAPKEAVAFVERCRK 177

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211
           +    +  ++      ++P  H           L    +  + S+  S        +   
Sbjct: 178 EHGLAIEGLMCIPPADENPGPHF-----ALLEKLAREAQVEKLSMGMSGDYETAIGFGAT 232

Query: 212 LTRPGISLYGGTDKINKS 229
             R G +++GG    N +
Sbjct: 233 SVRVGSAIFGGRSYANPT 250


>gi|315186193|gb|EFU19955.1| alanine racemase domain protein [Spirochaeta thermophila DSM 6578]
          Length = 230

 Score = 43.1 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 44/160 (27%), Gaps = 29/160 (18%)

Query: 25  ALSGNARTAAVVK-------DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT-P 76
                 R  AV K        +AY             AG++ F    ++E    R    P
Sbjct: 24  RRPEEVRVMAVTKLHGPEAIADAY------------RAGIRLFGENRLQEAASKREAFPP 71

Query: 77  QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLG 136
            A + ++  +   + +   +  L   I SV ++     L          L V    N  G
Sbjct: 72  DAELHLIGHLQRNKARKAVE--LFSCIHSVDRIPLIEALEKAWGDREGRLPVLVEVNLSG 129

Query: 137 LS-------LQEALDFTHNSFNKKLGQLSLIISHLACADD 169
                     +E              ++   ++     DD
Sbjct: 130 EETKYGFRTEEEVAQALERLAASPALEVRGFMTMAPYTDD 169


>gi|190893472|ref|YP_001980014.1| ornithine decarboxylase [Rhizobium etli CIAT 652]
 gi|190698751|gb|ACE92836.1| probable ornithine decarboxylase protein [Rhizobium etli CIAT 652]
          Length = 377

 Score = 43.1 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 62/200 (31%), Gaps = 28/200 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+H+      ++     VK N A      ++   L   G       V  +
Sbjct: 20  LVVDLDVVRDNFHAFRHAMPDSAIYYAVKANPA-----PEVLKLLAGLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++       A           +  I     L   + +V       K+          
Sbjct: 75  EMALE---AGATAARISFGNTIKKERDIARAHALGVSLFAVDSHEEVEKISRAAPGARVF 131

Query: 126 LQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            +V T         +R  G   Q A+D    +    L Q   +  H+             
Sbjct: 132 CRVLTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGL-QSYGVSFHVGSQMTK------- 183

Query: 178 QLERFRTLISHYKGIEASLA 197
            ++ + + ++  K +  SLA
Sbjct: 184 -VDAWDSALADAKRVFVSLA 202


>gi|46143323|ref|ZP_00135498.2| COG0325: Predicted enzyme with a TIM-barrel fold [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207540|ref|YP_001052765.1| hypothetical protein APL_0052 [Actinobacillus pleuropneumoniae L20]
 gi|307256072|ref|ZP_07537860.1| hypothetical protein appser10_780 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|126096332|gb|ABN73160.1| hypothetical protein APL_0052 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|306865494|gb|EFM97389.1| hypothetical protein appser10_780 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 231

 Score = 43.1 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 18/198 (9%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDT-NLIP 101
            +       AG   F    V+EGV+   Y  Q           +   + +++ +  + I 
Sbjct: 37  VEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQ 96

Query: 102 VISSVPQLTFYSKLMSCGV---SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
            +  +      S   S      +    + +    ++ G+  +E  +           +L 
Sbjct: 97  TVDRLKIAERLSAQRSANKAPLNVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLR 156

Query: 159 LIIS--HLACADDPSSHVNSVQLERFRTLISHYKGIEA-SLASS----SGILLGPNYHFQ 211
            +++        +          + F  L   ++GI+  S+  S    + I  G      
Sbjct: 157 GLMAIPKPESEPEQQKIALRKMQQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGST---- 212

Query: 212 LTRPGISLYGGTDKINKS 229
           + R G +++G  D   KS
Sbjct: 213 MVRIGTAIFGARDYSAKS 230


>gi|169334999|ref|ZP_02862192.1| hypothetical protein ANASTE_01405 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257737|gb|EDS71703.1| hypothetical protein ANASTE_01405 [Anaerofustis stercorihominis DSM
           17244]
          Length = 354

 Score = 43.1 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 117/369 (31%), Gaps = 80/369 (21%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGN--------ARTAAVVKDNAYGLGCEKIAPALYNAGV 57
           F ++KIDL  ++ N   +     +         +       +      E IA  L   G 
Sbjct: 2   FPKIKIDLHGIRENTTRVCDKCKSIGIDVTAITKVFL---AD------ENIAECLVTGGT 52

Query: 58  QDFFVTSVEEGVKLRLYT------PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF 111
                + +E    L+            RI         + + +   + + + S +  +  
Sbjct: 53  TALGDSRIE---NLKNLGCFNMEKWLVRI-----PMESEIEDVIKYSDVSLNSEIKTIRL 104

Query: 112 Y-SKLMSCGVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLAC--A 167
              +      +H   L  D G  R G  S  + L         K  +L  I ++L C  A
Sbjct: 105 LNKEAYKQDTTHKVILMADLGDLREGYFSTDDLLSDVDKVLQMKNIELYGIGTNLTCFGA 164

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLA----SSSGILLGPNYHFQLT---RPGISLY 220
             P       +L + +  I +   IE  +     SSS  L+            R G  + 
Sbjct: 165 IIP-RPETLQKLVKIKERIENDFDIELKVVSGGNSSSYTLVDRGEMIDGINSLRLGEVIL 223

Query: 221 GGTDKINKSHPMQTV-------VTAEARIILIRK---ALAGELV----SYGGQKKLTRDS 266
            G    N++     V          EA+I+ +++      GE+         +       
Sbjct: 224 LG----NETSYGTPVEGLHHDNFILEAQIVELKEKPSVPIGEIGIDAFGNKPEFVNKGTM 279

Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL 326
             A+ A+G                   V + G   +    + ILG  + D T+ D+T+  
Sbjct: 280 KRAIIAVG----------------KQDVRIDGMTPVD-SDIEILGA-SSDHTILDLTNVN 321

Query: 327 SI-EVGDYI 334
            I ++GD +
Sbjct: 322 KIYKLGDTV 330


>gi|163869197|ref|YP_001610449.1| hypothetical protein Btr_2479 [Bartonella tribocorum CIP 105476]
 gi|161018896|emb|CAK02454.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 235

 Score = 43.1 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 13/181 (7%)

Query: 52  LYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSV 106
           L  AG   F    V+E  +    LR      ++ ++  +   +        ++I  +   
Sbjct: 59  LLQAGQSLFAENRVQEAAQKWLGLRQQFENIKLHLIGPLQSNKAAEAVKIFDVIQTVDRE 118

Query: 107 PQLTFYSKLMSCGVSH-PYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISH 163
                 ++ M     H P  +QV+ G      G++ QE + F     N     +  +++ 
Sbjct: 119 KIAKILAEEMQKQKRHIPCYVQVNIGLEPQKSGIAPQEVIPFVSQCKNNYGLDIIGLMAI 178

Query: 164 LACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT 223
               ++P     ++  +  +   +    +   +++     L   +   + R G +L+G  
Sbjct: 179 PPVDENP-GPYFALLAKLAKQ--AGLPKLSMGMSNDFKTAL--QFGSNVLRIGSALFGKR 233

Query: 224 D 224
            
Sbjct: 234 P 234


>gi|225849671|ref|YP_002729905.1| pyridoxal phosphate enzyme, YggS family [Persephonella marina
           EX-H1]
 gi|225646566|gb|ACO04752.1| pyridoxal phosphate enzyme, YggS family [Persephonella marina
           EX-H1]
          Length = 228

 Score = 43.1 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 19/125 (15%)

Query: 50  PALYNAGVQDFFVTSVEEGV-------KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102
              Y AGV+ F    V+EG+       ++R         ++ G+   + K         +
Sbjct: 43  KEAYEAGVRYFGENRVQEGIKKIEQLKEIRDIHWH----LIGGLQTNKAKYAVRY--FEL 96

Query: 103 ISSVP----QLTFYSKLMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQ 156
           I S+           +    G      ++V+ G    + G+  +        S  K+  +
Sbjct: 97  IHSLDRESLADELDKRARKIGKKQDVLIEVNIGEEETKYGVKPENLEKLFEYSIKKENIR 156

Query: 157 LSLII 161
           +  ++
Sbjct: 157 ILGLM 161


>gi|291530262|emb|CBK95847.1| pyridoxal phosphate enzyme, YggS family [Eubacterium siraeum 70/3]
 gi|291557078|emb|CBL34195.1| pyridoxal phosphate enzyme, YggS family [Eubacterium siraeum
           V10Sc8a]
          Length = 241

 Score = 43.1 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 40/245 (16%)

Query: 2   HSNEFLRLK-IDLT--ALKNNWHSMNALSG---NARTAAVVKDNAYGLGCEKIAPA--LY 53
            S E   L+ I L   A+K N       +G     R  AV K                  
Sbjct: 7   KSAEETTLEDIKLNYTAIKQNIAEAMDKAGRCDTVRIMAVTKT-------VPCEKINYAE 59

Query: 54  NAGVQDFFVTSVEEGVKLRLYTP------QARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
           + G+       V+E +             ++ I  + G+   + K I D   + +I SV 
Sbjct: 60  SLGIDLLGENRVQEFL-----GKYENYSEKSEIHFIGGLQKNKVKYIIDK--VSMIHSVD 112

Query: 108 QLTFYSKLMSCGVSHPYA----LQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
            +   +++     SH       L+++ G   ++ G++  E ++        +  ++  ++
Sbjct: 113 SVELAAEIDRRAGSHGLVKDILLEINIGGEESKGGIAPSELIETAKAVSGLENVRIRGLM 172

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGI 217
           + +   +    +  S+Q E F      Y  +      S+  S        Y   L R G 
Sbjct: 173 T-IPPVNCDEKYFASMQ-ELFENSKQKYSFLSGMDTLSMGMSGDYATAVKYGSTLVRIGS 230

Query: 218 SLYGG 222
            L+G 
Sbjct: 231 GLFGY 235


>gi|222106310|ref|YP_002547101.1| hypothetical protein Avi_5224 [Agrobacterium vitis S4]
 gi|221737489|gb|ACM38385.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 388

 Score = 43.1 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 62/199 (31%), Gaps = 23/199 (11%)

Query: 73  LYTPQARIF--------VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGV 120
              P+A I          L          + +  L   +  +       +        G 
Sbjct: 86  EAFPKAEILYGKPLPTRALAAWMRLASPHLVEDLLRRTVFLIDSPDRLDQYAALAREAGQ 145

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFT-HNSFNKKLGQLSLII---SHLACADDPSSHVNS 176
           +   A + DTG +R G    +AL      +  +K  ++  ++   +H+            
Sbjct: 146 TIRIAFETDTGMHRGGFETPDALAAICARAIQQKELRIEGLVGYEAHIPEVARLIGGAAE 205

Query: 177 VQ--LERFRTLISHYKGIEASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKS- 229
            +  + R +  +S +     ++A++ G     +YH          G +    TD    S 
Sbjct: 206 REKVISRVKAFVSVFPHGTCAIANTGGSKTALSYHDAGAANEVSVGSAFLKPTDFDMPSL 265

Query: 230 HPMQTVVTAEARIILIRKA 248
             +Q  V     ++ + + 
Sbjct: 266 EAVQPAVFIATPVLKVEEV 284


>gi|288941699|ref|YP_003443939.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288897071|gb|ADC62907.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 428

 Score = 42.7 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 50  PALYNAGVQDFFVTSVE---------EGVKL-RLYTPQARIFVLYGIHPGQE------KI 93
            AL  +G + FFV  V+         E + L R +     + VL   +          K 
Sbjct: 48  RALLASGARRFFVAVVDLNLPDSREGEAIDLVRAHDI--PVIVLTAHYDEAIRARMLTKE 105

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137
           + D  L   +  +  +    + +         +  D+G  R  L
Sbjct: 106 VVDYLLKSSLHEIDHVATLVRRIHRNRDVKVLVVDDSGSFRAYL 149


>gi|168704306|ref|ZP_02736583.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Gemmata
           obscuriglobus UQM 2246]
          Length = 373

 Score = 42.7 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 71/255 (27%), Gaps = 32/255 (12%)

Query: 16  LKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           +K N + +  ++G  AR    VK         +I   L  AGV      ++ E   L   
Sbjct: 25  IKQNINRVVEMAGGPARLRPHVKT----HKTVEIVKLLLEAGVTKHKCATIAEAEMLAHA 80

Query: 75  TPQARIFVLYGIHPGQEKIIFDTN-------LIPVISSVPQLTFYSK-LMSCGVSHPYAL 126
                + + Y +     +   +            +I         S  + + G +    L
Sbjct: 81  G-APDVLIAYPLVGPNIQRACELIRKYPGTTFSALIDDATATRALSATMAAAGRTIGVVL 139

Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF--- 182
            +D G +R G+++   AL     +      +L     +      P        +  F   
Sbjct: 140 DLDVGQHRTGIAVGPGALALYELAGQLPGLRLDGFQLYDGHNSQPDRAEREQAVRAFIKP 199

Query: 183 ---RTLISHYKGIEAS-LASSSGILLGPNYHFQLTRPGISLY---------GGTDKINKS 229
                  +  KG+    L    G    P Y      PGI            G   K    
Sbjct: 200 VLDLRAAAEAKGLPVPRLVC-GGTPSFPVYAAMTDVPGIECSPGTFVLHDAGYGPKYADL 258

Query: 230 HPMQTVVTAEARIIL 244
             +        R+I 
Sbjct: 259 AGITPAAVLVTRVIS 273


>gi|240851274|ref|YP_002972677.1| hypothetical protein Bgr_18910 [Bartonella grahamii as4aup]
 gi|240268397|gb|ACS51985.1| hypothetical protein Bgr_18910 [Bartonella grahamii as4aup]
          Length = 229

 Score = 42.7 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 13/181 (7%)

Query: 52  LYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSV 106
           L  AG   F    V+E  +    LR      ++ ++  +   +        ++I  +   
Sbjct: 53  LLQAGQSLFAENRVQEAAQKWLGLRQQFENIKLHLIGPLQSNKAAEAIKIFDVIQTVDRE 112

Query: 107 PQLTFYSKLMSCGVSH-PYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISH 163
                 ++ M     H P  +QV+ G      G++ QE + F +   N     +  ++  
Sbjct: 113 KIAKILAEEMQKQKRHLPCYVQVNIGLEPQKSGVAPQEVIPFVNQCKNNYGLDIIGLMGI 172

Query: 164 LACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT 223
               ++P  +           L       + S+  SS       +   + R G +L+G  
Sbjct: 173 PPVDENPGPYF-----ALLAKLAKQADLPKISMGMSSDFKTALQFGSNVLRIGSALFGKR 227

Query: 224 D 224
            
Sbjct: 228 P 228


>gi|148657962|ref|YP_001278167.1| alanine racemase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570072|gb|ABQ92217.1| alanine racemase domain protein [Roseiflexus sp. RS-1]
          Length = 349

 Score = 42.7 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 78/279 (27%), Gaps = 45/279 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCE-----------KIAPALYNAGV 57
             IDL  L+ N                        G             +IA     AG 
Sbjct: 11  AIIDLDRLERNIARFQTYLSQ-------------HGIANRPHIKTHKIPQIARMQMAAGA 57

Query: 58  QDFFVTS--VEEGVKLRLYTPQARIFVLYGIHPGQ-----EKIIFDTNLIPVISSVPQLT 110
               +T   + E   +        IF+ Y I           +     L     SV  +T
Sbjct: 58  --VGITCQKLGEAEVMADAGID-DIFIPYNIIGAAKLERLTALARRVRLSVAADSVAVIT 114

Query: 111 FYSKLMS-CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
                M+  G+     ++ DTG  R G+ +  EA++           +   +++    + 
Sbjct: 115 GLGNAMAGTGLELTVLVECDTGMGRCGVQTPAEAVELALLITRTPGLRFGGLMT-YPSSP 173

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEA-SLASSSGILL-GPNYHFQLTRPGISLYG--GTD 224
           +    +     E  R L      +E  S   ++G+     +      R G+ +YG   T 
Sbjct: 174 EIGPFM----HEAVRLLRDRGIAVERVSGGGTAGMWRAHEHPQITEYRAGMYIYGDRYTL 229

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263
           +       +  +T    ++       G +          
Sbjct: 230 RAGAMQLEECALTIITTVVSRPTPDRGVIDGGSKTFSSD 268


>gi|169608606|ref|XP_001797722.1| hypothetical protein SNOG_07385 [Phaeosphaeria nodorum SN15]
 gi|160701681|gb|EAT84851.2| hypothetical protein SNOG_07385 [Phaeosphaeria nodorum SN15]
          Length = 708

 Score = 42.7 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 33/170 (19%)

Query: 11  IDLTALKNNWH-----------SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           +DL  ++ N             ++       +                +A  L +AG + 
Sbjct: 359 VDLDLMEANIKKLMERLLPTGVNIRPHLKTTK-------------SALLAQRLVDAGAKG 405

Query: 60  FFVTSVEEGVKLRLYTPQARIF---VLYGIHPGQEKIIFDTN--LIPVISS-VPQLTFYS 113
             V  + E   +        +    ++      +   +F  +  +  V+ S V       
Sbjct: 406 GCVAKLSEAEVMCAKGFDDLLITCEIIGAPKVKRLAELFKKHKSIRIVVDSEVGARAIND 465

Query: 114 KLMSCGVSHPYALQVDT--GFNRLGLSLQE-ALDFTHNSFNKKLGQLSLI 160
           +L   GV    A+ +D   G +R G+   E AL             L  +
Sbjct: 466 ELKKSGVDGRIAVLIDLDVGLHRTGIQPGEPALKLAACIAQLDHMALIGV 515


>gi|241666545|ref|YP_002984629.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862002|gb|ACS59667.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 366

 Score = 42.7 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 71/287 (24%), Gaps = 65/287 (22%)

Query: 1   MHSNEFL---------------RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC 45
           MH N F                R  ID   L  N   + +                  G 
Sbjct: 1   MHDNRFAVVAKAGDRIADLSTPRPVIDEDRLAANIGRVQSYMDQ-------------HGL 47

Query: 46  EKIAPALYNAGVQDFFVTSVE------------EGVKLRLYTPQARIFVLYGIHPGQEKI 93
               P +    +    V  V             E         +  +     + P + + 
Sbjct: 48  -NFRPHIKTHKIPALAVAQVAAGAKGINCQKVTEAEVFAEAGFEDILITFNILGPQKLER 106

Query: 94  IFDTN-----LIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTH 147
           +   N     L  V  S   +   +   S        ++ DTG  R G+ +  EA     
Sbjct: 107 LAKLNEKISALKVVADSEVTVDGLAAHFSGHKPLNVLVECDTGGGRCGVQTPDEAASLAK 166

Query: 148 NSFNKKLGQLSLIIS----HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL 203
                       I++      A A +        QL+         +GI   + S+ G  
Sbjct: 167 RIGASDGLTFGGIVTYPKPQSAAAVEAFIAETLAQLK--------AEGITCPIVSNGGTP 218

Query: 204 LGPNYHFQL----TRPGISLYGGTDKINKSHPMQ--TVVTAEARIIL 244
                H        R G  +Y     +   H  +    +   A ++ 
Sbjct: 219 SLFEAHLVTSATEHRAGTYIYNDRQMVRMGHCTEDNCAMHVLATVVS 265


>gi|110347166|ref|YP_665984.1| D-3-hydroxyaspartate aldolase [Mesorhizobium sp. BNC1]
 gi|110283277|gb|ABG61337.1| D-3-hydroxyaspartate aldolase [Chelativorans sp. BNC1]
          Length = 387

 Score = 42.7 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 45/223 (20%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYG-----LG----CEKIAPALYN--AGV 57
           L +DL AL+ N   M   +         K N  G      G       +   L     G 
Sbjct: 32  LILDLDALERNIRKMGDYA---------KAN--GMRHRSHGKMHKSVDV-QKLQERLGG- 78

Query: 58  QDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDT-----NLIPVISSVPQL 109
               V    V E         +  + V   +  P +   +         +I  +  V  +
Sbjct: 79  -SVGVCCQKVSEAEVFVRGGIK-DVLVSNQVRDPAKIDRLARLPKLGSRIIVCVDDVANI 136

Query: 110 TFYSKLMSC-GVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI------I 161
              S      G      +++D G  R G+ S    +     +      + + I      +
Sbjct: 137 ADLSAAAEKHGTQLEIFVEIDCGAGRCGVTSTDAVVKIAQAADAAPGLKFTGIQAYQGAM 196

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            H+  + +         +   +  +   K  G+E  L S  G 
Sbjct: 197 QHI-DSYEARKEKLDAAIAMVKDAVEGLKAVGLEPELVSGGGT 238


>gi|151943620|gb|EDN61930.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 428

 Score = 42.7 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 83/250 (33%), Gaps = 45/250 (18%)

Query: 42  GLG---CEKIAPALYNAGVQDFFVTSVEEGVKL-----RLYT--PQARIFVLYGIHPGQE 91
           G G    ++   A+         V++++E  +L     R  +       + L    P   
Sbjct: 70  GHGLPLAKRTTRAIL--------VSTLKEAEELLNYQDRQCSDYIDDITYSLPCCVPEFI 121

Query: 92  KIIFD-----TNLIPVISSVPQLTFYSKLM--SCGVSHPYALQVDTGFNRLGLSLQ--EA 142
            ++ +      N    + ++  L         + G      ++VD G  R GL+    E 
Sbjct: 122 PLLSNLSRRVNNFQVFVDNIEHLENLKNFGRPASGKKWSVFIKVDMGTKRAGLAFDSPEF 181

Query: 143 LDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS 199
           L           K++ +L    +H   +   S+ +N  Q      L+   K +     +S
Sbjct: 182 LSLLKKLTSSEIKEVIELYGFYAHAGHSYS-STSINDTQ----NLLMEEVKAV-----NS 231

Query: 200 SG-ILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELVS 255
           +  +L   +  F  ++  +S+ G T     +   +    V     ++I   +   G    
Sbjct: 232 AAKVLCSVDPQFDPSKLTLSV-GATPTSNSLKLDNKSTLVKFITTQLISTLEIHCGNYCM 290

Query: 256 YGGQKKLTRD 265
           Y  Q+  T  
Sbjct: 291 YDLQQVATGC 300


>gi|298492677|ref|YP_003722854.1| alanine racemase domain-containing protein ['Nostoc azollae' 0708]
 gi|298234595|gb|ADI65731.1| alanine racemase domain protein ['Nostoc azollae' 0708]
          Length = 222

 Score = 42.7 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 32/217 (14%)

Query: 25  ALSGNARTAAVVKDNAYGLGCEKI----APALYNAGVQDFFVTSVEEG----VKLRLYTP 76
           +L  + R  AV          +++        Y AG++DF  + ++E      +L+   P
Sbjct: 15  SLPASVRLIAV---------SKQVTTELMREAYTAGIRDFAESRIQEAASKQAELQDL-P 64

Query: 77  QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA------LQVDT 130
                 +  +   + K   +  L   I SV  L    +L +              +++  
Sbjct: 65  DITWHFIGNLQSNKAKKALE--LFDWIHSVDSLQIAQRLDTLASQLGVTPLVCLQVKILP 122

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS---HVNSVQ---LERFRT 184
             N+ G  + E L         K  Q+  +++      D        N  Q    E    
Sbjct: 123 DPNKSGWMVSELLADLEALNQCKNLQIQGLMTIPPFGLDHDEISSIFNHTQKLAKEIESQ 182

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
              H K +  S+  S    L       + R G  L+G
Sbjct: 183 QWLHIKMLHLSMGMSGDYQLAVRAGATMVRLGTILFG 219


>gi|126698022|ref|YP_001086919.1| putative amino acid racemase [Clostridium difficile 630]
 gi|115249459|emb|CAJ67274.1| ornithine racemase [Clostridium difficile]
          Length = 354

 Score = 42.7 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 121/361 (33%), Gaps = 58/361 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFV 62
           + RL+ID+  LK+N   ++ +    N + + V K         ++I   + + G+     
Sbjct: 2   YPRLEIDIEKLKHNVKLISQMCHERNIKISFVTKSFC----AQKEIVEEICSEGIDHIAD 57

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
           + ++    L+         ++      + + + +   I   S +  +   ++L  S  + 
Sbjct: 58  SRIQNLKNLQD--INLPKILIRIPMLSELEEVINYCDISFNSELGTIKKLNELCESKNII 115

Query: 122 HPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQ 178
           H   L  D G  R G    ++  +        K  ++  I ++L C  A  PS       
Sbjct: 116 HKIVLMFDLGDLREGYFYEEDFFNNVREIVRLKNIEIIGIATNLTCYGAIIPSRENIGRL 175

Query: 179 LERFRTLISHYKGIEASLA---SSSGILL-----GPNYHFQLTRPGISLYGGTDKINKSH 230
           +   + +   + GI   +    +SS I L      P     L      L G      ++ 
Sbjct: 176 VSIAKRMEEKF-GINLEIVSGGNSSSIHLLINNNMPEGITNLRIGESILLGRETAYGENI 234

Query: 231 P--MQTVVTAEARIILIRK---ALAGELV--------SYGGQKKLTRDSLIAVAAIGYAD 277
               Q       +++  ++      GE+          Y  +  L R    A+ AIG   
Sbjct: 235 NGTYQDAFKLICQVVECKEKPSVPIGEIGVDAFRNKPVYEDKGILKR----AIIAIG--- 287

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI 336
                    D      + +     I G         + D  + D++++    ++GD ++ 
Sbjct: 288 -------KQDINIDSLIPIDTDIKILG--------ASSDHMILDVSNTKYDYKLGDNLEF 332

Query: 337 F 337
            
Sbjct: 333 L 333


>gi|66046627|ref|YP_236468.1| alanine racemase, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257334|gb|AAY38430.1| Alanine racemase, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
          Length = 378

 Score = 42.7 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 82/265 (30%), Gaps = 49/265 (18%)

Query: 12  DLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           D++ +++N   M                 ++   V+              A   AG    
Sbjct: 16  DVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVI-------------QAQIAAGASGV 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN--------LIPVISSVPQLTFY 112
            V++++E            +F    I PG+ +              L   +++   +  +
Sbjct: 63  TVSTLKEAEHCFAEGID-DVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAVF 121

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPS 171
            +           +++D   +R GL++++ +L    ++      QL  +++H   + D  
Sbjct: 122 GQAHDERFD--VWIEIDCDGHRSGLTVEDPSLVEVASTLVNGGMQLRGVMTHAGSSYDLD 179

Query: 172 SHVNSVQLERFRTLI----------SHYKGIEASLASSSGILLGPNYHFQL-TRPGISLY 220
           +      L      +          +     + S+ S+   L   + H     R G+ ++
Sbjct: 180 TPAALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTALSAQSLHGVTEVRAGVYVF 239

Query: 221 --GGTDKINKSHPMQTVVTAEARII 243
                  I      +  ++    +I
Sbjct: 240 FDLVMHNIGVCRADELALSVLTTVI 264


>gi|317508088|ref|ZP_07965772.1| pyridoxal-dependent decarboxylase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253599|gb|EFV12985.1| pyridoxal-dependent decarboxylase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 421

 Score = 42.7 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 73/226 (32%), Gaps = 29/226 (12%)

Query: 4   NEFLR--------LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYN 54
            EFLR        + IDL  ++  +  + A   +AR    VK N A      ++   L  
Sbjct: 43  REFLRDNPTPSPCVVIDLATVRERYWQLTAALPSARMYYAVKANPA-----PEVVRELAT 97

Query: 55  AGVQDFFVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
            G   F V SV E ++L L     A+          +  I     L   + +        
Sbjct: 98  IG-SSFDVASVPE-IELCLAEGASAQNLCYGNTIKKRADIARAYELGVRLYTTDSEADLE 155

Query: 114 KLMSCGVSHPYALQVDTGFNR--------LGLSLQEALDFTHNSFNKKLGQLSLIISHLA 165
            L           +V    +          G S + A      +   KLG ++  +S  A
Sbjct: 156 ALAEHAPGSSVFCRVQAAGHGAVYSFGSKFGCSPELAESLLLRAG--KLGLVAGGVSFHA 213

Query: 166 CADDPSSHVNSVQLERFRTLISHY--KGIEASLASSSGILLGPNYH 209
            +        S  +E+  ++ S    +G+   L +  G L G    
Sbjct: 214 GSQQLDPSAWSAGIEQAASIASRLAAQGVRLPLLNIGGGLPGSYTQ 259


>gi|330951376|gb|EGH51636.1| hypothetical protein PSYCIT7_08289 [Pseudomonas syringae Cit 7]
          Length = 228

 Score = 42.7 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 72/240 (30%), Gaps = 50/240 (20%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           Y AG++DF 
Sbjct: 4   IAANISTLEQRIRDAALAAERDPASV--------GLLAVSKTKPASDLREAYTAGLRDFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELSDLPLCWHFIGPIQSNKTRAIAENFDW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + V    ++ G + Q+              +L  ++   A  +     
Sbjct: 114 PEALEPLNICIQVNVSGEASKSGCTPQDLPALAAAISALPRLRLRGLM---AIPEPTDDP 170

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQLTRPGISLYGGTD 224
             + Q   F  + +  + +   L      L     H             R G +L+G  D
Sbjct: 171 --AAQNASFAAVRTLQEQLHLPLD----TLSMGMSHDLEAAVAQGATWVRIGTALFGARD 224


>gi|26991770|ref|NP_747195.1| alanine racemase domain protein [Pseudomonas putida KT2440]
 gi|24986880|gb|AAN70659.1|AE016710_4 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 228

 Score = 42.7 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 57/196 (29%), Gaps = 30/196 (15%)

Query: 50  PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPVISSV 106
             ++ AGV DF    ++E +  +         +      I   + K I +      + SV
Sbjct: 44  REIHAAGVHDFGENYLQEALTKQQALSDLP-LIWHFIGPIQSNKTKAIAEHFDW--VHSV 100

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLI 160
            +L    +L     +    L +    N      + G +  +              +L  +
Sbjct: 101 DRLKIAQRLSEQRPAGLAPLNICLQVNVSGEDSKSGCTPADLPALAKAVAALPNLRLRGL 160

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQ 211
           +   A  +         Q   F +L    +G+   L      L     H           
Sbjct: 161 M---AIPEPTEDRAT--QEAAFASLRKLQEGLGLGLD----TLSMGMSHDLEAAIAQGAT 211

Query: 212 LTRPGISLYGGTDKIN 227
             R G +L+G  D  N
Sbjct: 212 WVRIGTALFGARDYGN 227


>gi|330967859|gb|EGH68119.1| hypothetical protein PSYAC_25113 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 359

 Score = 42.7 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 8/149 (5%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NL 99
              +  A   AG     V++++E          + +F    I PG+             L
Sbjct: 28  SLPVIQAQIAAGASGVAVSTLKEAEHCFAEGI-SDVFYAVAIAPGKLDQALTLRRNGCRL 86

Query: 100 IPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQL 157
             +  SV                    +++D   +R GL++++ AL     +  +   QL
Sbjct: 87  SLLTDSVVAAQAIVAFGQQHDEQFEVWIEIDCDGHRSGLTVEDNALIEVAKTLVEGGMQL 146

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLI 186
             +++H   + D  S      L     L+
Sbjct: 147 RGVMTHAGSSYDLDSPEALQALAEQERLL 175


>gi|296394573|ref|YP_003659457.1| Orn/DAP/Arg decarboxylase 2 [Segniliparus rotundus DSM 44985]
 gi|296181720|gb|ADG98626.1| Orn/DAP/Arg decarboxylase 2 [Segniliparus rotundus DSM 44985]
          Length = 421

 Score = 42.7 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 60/211 (28%), Gaps = 17/211 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  ++  +  + A    AR    VK N A      ++   L  AG   F V SV E
Sbjct: 56  LVVDLETVRERYCQLTAALPKARVYYAVKANPA-----AEVVRELAAAG-SCFDVASVAE 109

Query: 68  GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++L        R             +     L   + +    T    L           
Sbjct: 110 -IELCLAAGANPRDLCYGNTIKKPADVAKAHALGVRLYTTDSETDLEALSEHAPGSSVFC 168

Query: 127 QVDTGFNR--------LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
           ++    +          G + + A      +    L    +     +   DP +  + + 
Sbjct: 169 RIAAVHDGAVYSFGAKFGCAPELAESLLLRAGTLGLAAAGVSFHSGSQQLDPHAWRSGIA 228

Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYH 209
                      KG+   + +  G L G   H
Sbjct: 229 HAAQIAARLAAKGVRLPMLNIGGGLPGSYTH 259


>gi|284991679|ref|YP_003410233.1| alanine racemase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284064924|gb|ADB75862.1| alanine racemase domain protein [Geodermatophilus obscurus DSM
           43160]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 60/216 (27%), Gaps = 35/216 (16%)

Query: 29  NARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEE----GVKLRLYTPQARIF 81
             R  AV K    +A           L   G  DF     +E      +L          
Sbjct: 28  EVRLLAVSKTWPADA--------VRELAALGQADFGENRAQELTGKAAELAD-------L 72

Query: 82  VLYGIHPGQE---KIIFDTNLIPVISSVPQLTFYSKLM----SCGVSHPYALQVDTG--- 131
            L     GQ    K      L  V+ SV +L+    L       G      LQVD G   
Sbjct: 73  PLRWHFIGQLQRNKAAAVARLGAVVHSVDRLSLARALARVGVETGRPVEVFLQVDLGGPE 132

Query: 132 ---FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188
                R G    E          ++   L  +++       P      +     R    H
Sbjct: 133 GELAARGGADPAEVPALADAVAAEEGLALRGLMAVAPRGAAPGPAFGRLAALAQRVRADH 192

Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
            + ++ S   S+ +         L R G +L+G   
Sbjct: 193 PEALDLSAGMSADLEEAVAAGSTLLRVGTALFGTRP 228


>gi|50059365|gb|AAT69406.1| alanine racemase [Borrelia burgdorferi]
          Length = 61

 Score = 42.7 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALY 53
          +    G     A +K +AYG G   I   L 
Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFLK 57


>gi|313501070|gb|ADR62436.1| Alanine racemase domain protein [Pseudomonas putida BIRD-1]
          Length = 228

 Score = 42.7 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 57/196 (29%), Gaps = 30/196 (15%)

Query: 50  PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPVISSV 106
             ++ AGV DF    ++E +  +         +      I   + K I +      + SV
Sbjct: 44  REIHAAGVHDFGENYLQEALTKQQALSDLP-LIWHFIGPIQSNKTKAIAEHFDW--VHSV 100

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLI 160
            +L    +L     +    L +    N      + G +  +              +L  +
Sbjct: 101 DRLKIAQRLSEQRPAGLAPLNICLQVNVSGEDSKSGCTPADLPALAKAVAALPNLRLRGL 160

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQ 211
           +   A  +         Q   F +L    +G+   L      L     H           
Sbjct: 161 M---AIPEPTEDRAT--QEAAFASLRKLQEGLGFGLD----TLSMGMSHDLEAAIAQGAT 211

Query: 212 LTRPGISLYGGTDKIN 227
             R G +L+G  D  N
Sbjct: 212 WVRIGTALFGARDYGN 227


>gi|17548645|ref|NP_521985.1| diaminopimelate decarboxylase protein [Ralstonia solanacearum
           GMI1000]
 gi|17430893|emb|CAD17575.1| probable staphyloferrin b siderophore synthesis decarboxylase
           protein [Ralstonia solanacearum GMI1000]
          Length = 413

 Score = 42.7 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 32/188 (17%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           DL  L+     ++A L         +K N+       +  A  +  V  + V S+ E V+
Sbjct: 23  DLDHLRERAARLSAMLPPGCELFYAIKANS----DAPVL-AALDGAVAGYEVASLGEVVR 77

Query: 71  LRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPV-ISSVPQLTFYSKLM-SCGVSHPYAL 126
            R    QARI V  G     +++    +  +  + + S  QL     +    G      L
Sbjct: 78  AREVGAQARI-VFGGPGKTDDELQGALERGVELIHVESELQLRRLDAIACRMGRRARVLL 136

Query: 127 QVDTG----------------FNR----LGLSLQEALDFTHNSFNKKLGQLSLIISH-LA 165
           +V+                          G+      D    +      ++  +  H L+
Sbjct: 137 RVNPNPLSADAVGKRAQGTLTMGGQPTQFGIEEDAVPDLIRLARTLPGVEVVGLHLHALS 196

Query: 166 CADDPSSH 173
              D  SH
Sbjct: 197 NNLDADSH 204


>gi|198284947|ref|YP_002221268.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666233|ref|YP_002427632.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249468|gb|ACH85061.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518446|gb|ACK79032.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 419

 Score = 42.7 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 58/174 (33%), Gaps = 28/174 (16%)

Query: 14  TALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK-- 70
            AL+  +HS   AL  N R    VK N+  LG  +I       G   F + S  E ++  
Sbjct: 35  AALRERYHSFSAALGDNTRVCYAVKANS-NLGILRI---FAEMGA-GFDIVSGGE-LERV 88

Query: 71  LRLYTPQARIFVLYGI--HPGQEKIIFDTNLIP--VISSVPQLTFYSKLMSCGVSHPYAL 126
           LR       I V  G+     + +      +    V S+             G   P AL
Sbjct: 89  LRAGGDAGTI-VFSGVGKSSVEIRAALGAGIFCLNVESAAELWRIADIAADMGKRAPVAL 147

Query: 127 Q----VDTGFNR----------LGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
           +    VD G +R           G+ + +A      +      +L  I  H+  
Sbjct: 148 RVNPDVDPGTHRYIATGLKESKFGIPMDQARHLYLQAAQHPALELKGIACHIGS 201


>gi|126740880|ref|ZP_01756564.1| threonine aldolase, low-specificity [Roseobacter sp. SK209-2-6]
 gi|126717980|gb|EBA14698.1| threonine aldolase, low-specificity [Roseobacter sp. SK209-2-6]
          Length = 387

 Score = 42.3 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 66/225 (29%), Gaps = 49/225 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYN--A 55
           L +DL AL+ N   M   +         K      G              +A  L     
Sbjct: 32  LVLDLDALERNIKKMGDYA---------KA----HGMRHRVHGKMHKSVDVAK-LQETLG 77

Query: 56  GVQDFFVTS--VEEGVKLRLYTPQARIFVLYGIHPGQ--EKII----FDTNLIPVISSVP 107
           G     V    V E         +  + V   +   Q  +++          I  +  + 
Sbjct: 78  GA--VGVCCQKVSEAEVFARGGIK-DVLVSNQVRDVQKIDRLARLPKLGARTIVCVDDLD 134

Query: 108 QLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI----- 160
            +   S      G      +++D G  R G++  EA ++        +  + S I     
Sbjct: 135 NVADLSAAAQKHGTELEVFVEIDCGAGRCGVTTTEAVVEIAKAVNAAENLKFSGIQAYQG 194

Query: 161 -ISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            + H+  + +       + + +    +   K  GIE  L S  G 
Sbjct: 195 AMQHI-DSYEGRKEKLDIAIAQVANAVEGLKSEGIECELVSGGGT 238


>gi|67479513|ref|XP_655138.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56472254|gb|EAL49752.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 229

 Score = 42.3 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 3/128 (2%)

Query: 100 IPVISSVPQLTFYSKL-MSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQ 156
           +  + S+      +K  ++   +    +Q+++     + G+S++EA+             
Sbjct: 97  VQTVHSIEIAEKLNKACINANKTIDVMVQINSSGEEQKGGVSVEEAISVVKEVMKCSNLH 156

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPG 216
              I++     D   +     QL        H   IE S+  SS           + R G
Sbjct: 157 FIGIMTIGMVGDSKKNFTTMKQLADTICSQEHLGSIEISMGMSSDYEQAIELGATMVRVG 216

Query: 217 ISLYGGTD 224
            +L+G  D
Sbjct: 217 TALFGARD 224


>gi|260222645|emb|CBA32411.1| UPF0001 protein PA0394 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 250

 Score = 42.3 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 77/240 (32%), Gaps = 41/240 (17%)

Query: 16  LKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           + +N H++      A           R  AV K               ++AG + F    
Sbjct: 22  IADNLHAVAQRIAQACTQSGRPADSVRLLAVSKTFG-----PDAVQQAFDAGQRAFGENY 76

Query: 65  VEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           ++E V     L     +     +  I   + +++ +      + +V +L    +L     
Sbjct: 77  IQEAVDKISALSALPIE--WHCIGPIQSNKTRLVAEH--FQWVQTVDRLKIAQRLSDQRP 132

Query: 121 SHP------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
            H         + VD G  + G++ Q+A+            QL  I+    C  +P+   
Sbjct: 133 PHLPPLQVCIQVNVDGGPTKSGVTPQDAVALALEVAQLPRLQLRGIM----CIPEPAPDF 188

Query: 175 NSVQL------ERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
            + +         F  +++    ++  S+  S  +         + R G +++G      
Sbjct: 189 VAARAVFMSAKAVFDAVVAQGLPLDTLSMGMSGDLDAAVAGGSTMVRVGSAIFGARPTPA 248


>gi|119494577|ref|ZP_01624710.1| hypothetical protein L8106_15824 [Lyngbya sp. PCC 8106]
 gi|119452083|gb|EAW33294.1| hypothetical protein L8106_15824 [Lyngbya sp. PCC 8106]
          Length = 193

 Score = 42.3 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 29/159 (18%)

Query: 20  WHSMNALSGNA-RTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----- 70
              + +   ++ R  AV   V          +     Y AG++DF    + E ++     
Sbjct: 9   IAEIRSQVPDSVRIVAVTKTV--------SVEAIRIAYAAGIRDFGENRISEAMEKQEQL 60

Query: 71  --LRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLM---SCGVSHP 123
             L   T       L G        K +     I  + S+       +L     C     
Sbjct: 61  QDLSDITWH-----LIGHIQSNKAIKAVQHFQWIHSVDSLKLAQRLDRLAQESDCQPQVC 115

Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
             +++ T  N+ G ++ E L+        +  Q+  +++
Sbjct: 116 LQVKILTDPNKYGWTVSELLEDLAELNQCQQIQIKGLMT 154


>gi|330972501|gb|EGH72567.1| alanine racemase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 378

 Score = 42.3 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 82/265 (30%), Gaps = 49/265 (18%)

Query: 12  DLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           D++ +++N   M                 ++   V+              A   AG    
Sbjct: 16  DVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVI-------------QAQIAAGASGV 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN--------LIPVISSVPQLTFY 112
            V++++E            +F    I PG+ +              L   +++   +  +
Sbjct: 63  TVSTLKEAEHCFAEGID-DVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAVF 121

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPS 171
            +           +++D   +R GL++++ +L    ++      QL  +++H   + D  
Sbjct: 122 GQAHDERFD--VWIEIDCDGHRSGLTVEDPSLVEVASTLVNGGMQLRGVMTHAGSSYDLD 179

Query: 172 SHVNSVQLERFRTLI----------SHYKGIEASLASSSGILLGPNYHFQL-TRPGISLY 220
           +      L      +          +     + S+ S+   L   + H     R G+ ++
Sbjct: 180 TPAALQALAEQERRLCVSAAERIRQAGLPCEDVSIGSTPTALSAQSLHGVTEVRAGVYVF 239

Query: 221 --GGTDKINKSHPMQTVVTAEARII 243
                  I      +  ++    +I
Sbjct: 240 FDLVMHNIGVCRADELALSVLTTVI 264


>gi|168704641|ref|ZP_02736918.1| alanine racemase domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 366

 Score = 42.3 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 8/119 (6%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLY---GIH--PGQEKIIFDTNLIPVI 103
           A  +  AG   F    + E   L        I +     G+H      ++    +LI  +
Sbjct: 61  ARHVAAAGPDGFAAAKLNEAEALADAGVT-DILLANQVVGLHKLRRAARLARRADLIVCV 119

Query: 104 SSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLI 160
                    S      G      ++VD G  R G+     A++           +   +
Sbjct: 120 DDADNARALSAAAVAEGTQIRALVEVDIGMARCGVPPGAAAVELAQTVAALPGLRFYGL 178


>gi|326800274|ref|YP_004318093.1| alanine racemase domain protein [Sphingobacterium sp. 21]
 gi|326551038|gb|ADZ79423.1| alanine racemase domain protein [Sphingobacterium sp. 21]
          Length = 374

 Score = 42.3 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 53/193 (27%), Gaps = 40/193 (20%)

Query: 16  LKNNWHSMNALSGNARTAAVVK--------------DNAYGLGCEKIAPALYNAGVQDFF 61
           +KNN   +          ++VK               +A           L  AG+  F 
Sbjct: 29  VKNNIQLL---------MSMVKSVDKLRPHIKTSKSADA--------IQLLQLAGINKFK 71

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP---VISSVPQLTFYSKLMSC 118
             ++ E   L     Q  +     + P   + I      P       + Q    S+L   
Sbjct: 72  CATIAEAELLGDCGVQDVLLAYQPVGPNINRFIALVKRFPNTSFACLIDQFDIASQLNQV 131

Query: 119 GVSHPYALQV----DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
             +  + L +    + G NR G+   +         +     L  +  H        + +
Sbjct: 132 AFAESFNLNIYFDINVGMNRTGIKTDKVSALAEQCSSLSNLILLGL--HCYDGHIHEASL 189

Query: 175 NSVQLERFRTLIS 187
            + Q +  R    
Sbjct: 190 EARQNQCHRYFTE 202


>gi|153831634|ref|ZP_01984301.1| metal-activated pyridoxal enzyme [Vibrio harveyi HY01]
 gi|148872144|gb|EDL70961.1| metal-activated pyridoxal enzyme [Vibrio harveyi HY01]
          Length = 368

 Score = 42.3 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 47/172 (27%), Gaps = 37/172 (21%)

Query: 11  IDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +D+  +K N  +M             +       K          IA    +AG Q   V
Sbjct: 13  VDIDKMKTNIKAMQQRINDLGLTLRPHT------KA----HKIPAIAQMQLDAGAQGICV 62

Query: 63  TSVEEGVKLRLYTPQARIFV------------LYGIHPGQEKIIFDTNLIPVISSVPQ-L 109
             + E   +     +  I +            L  +H        D   I VI      +
Sbjct: 63  AKLGEAEVMAQGGIK-DILITTPIAGQKKIQRLITLHQDHP----DARFIQVIDDYYHVV 117

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLI 160
                  +  +     ++V++G  R G+ +  + +   H            +
Sbjct: 118 EIAKAASAANLCVELMIEVESGQQRCGVQVGDDLVQLIHAIQITDGVSYVGL 169


>gi|326381918|ref|ZP_08203611.1| hypothetical protein SCNU_03202 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199344|gb|EGD56525.1| hypothetical protein SCNU_03202 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 354

 Score = 42.3 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 29/208 (13%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPAL 52
           M    FL + +D   L  N  +M          L  +A+T            C +IA   
Sbjct: 1   MPDTPFLFVDVDR--LDRNLTAMADWAERHGIRLRPHAKT----------HKCAEIARRQ 48

Query: 53  YNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ------EKIIFDTNLIPVISSV 106
             AG     V ++ E            +F+ Y +   +        +     L     SV
Sbjct: 49  LEAGAVGLSVATIGEAEIFAELGVD-DLFIAYPLWLSENKARRLRALAGRVQLAVGADSV 107

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
             +   +  +    +    ++VD+G +R GL     ++    + +  L  ++ + +    
Sbjct: 108 AGVRRLADAIGD-TTATVLIEVDSGMHRSGLPAGNVVEVATAARDSGL-TVAGVFTFPGH 165

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIEA 194
              P S  +    +  + L S  + + A
Sbjct: 166 GYGPGSARSDAAAQEAQALGSAAEALRA 193


>gi|93005807|ref|YP_580244.1| alanine racemase-like [Psychrobacter cryohalolentis K5]
 gi|92393485|gb|ABE74760.1| D-3-hydroxyaspartate aldolase [Psychrobacter cryohalolentis K5]
          Length = 384

 Score = 42.3 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 65/222 (29%), Gaps = 43/222 (19%)

Query: 9   LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNA--GVQ 58
           L +DL AL+ N   M             + +                +   L     G  
Sbjct: 29  LILDLDALERNVKKMGDYAKAHNMRHRSHGKM----------HKSVDV-QNLQEELGGA- 76

Query: 59  DFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVPQLT 110
              V    V E         +  + V   + +P + + + +       +   +  V  + 
Sbjct: 77  -IGVCCQKVSEAEVFVRGGIK-DVLVSNQVRNPAKIERLANLPKLGATITVCVDDVDNVA 134

Query: 111 FYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI------IS 162
             S      G      +++D G  R G++  EA ++        +  + + I      + 
Sbjct: 135 ELSAAATKAGTELNCYIEIDCGAGRCGVTTTEAVVEIAKAIDAAENLKFTGIQAYQGAMQ 194

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
           H+  +         + +++ +  I      G++    S  G 
Sbjct: 195 HM-DSFSDRKAKTQIAIDQVQEAIDALTEIGLKPEFVSGGGT 235


>gi|118590603|ref|ZP_01548004.1| threonine aldolase, low-specificity [Stappia aggregata IAM 12614]
 gi|118436579|gb|EAV43219.1| threonine aldolase, low-specificity [Stappia aggregata IAM 12614]
          Length = 387

 Score = 42.3 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 49/225 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYN--A 55
           L +DL AL+ N   M   +         K      G              +A  L     
Sbjct: 32  LVLDLDALERNIKKMGDYA---------KA----HGMRHRVHGKMHKSVDVAK-LQERLG 77

Query: 56  GVQDFFVTS--VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDT-----NLIPVISSVP 107
           G     V    V E         +  I V   +    +   +          I  +  + 
Sbjct: 78  GA--VGVCCQKVSEAEVFARGGIK-DILVSNQVRDKAKIDRLARLPKFGCRTIVCVDDLA 134

Query: 108 QLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI----- 160
            +   S+     G +    +++D G  R G++  +A ++           + + I     
Sbjct: 135 NVADLSEAAVKHGTTLEVFIEIDCGAGRCGVTTSDAVVEIAKAVDAASNLKFTGIQAYQG 194

Query: 161 -ISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            + H+  + +       + +   +  +   K  G+E  L S  G 
Sbjct: 195 AMQHI-DSFEARKEKLDIAIAMVKDAVEALKMVGLEPELVSGGGT 238


>gi|319957271|ref|YP_004168534.1| orn/dap/arg decarboxylase 2 [Nitratifractor salsuginis DSM 16511]
 gi|319419675|gb|ADV46785.1| Orn/DAP/Arg decarboxylase 2 [Nitratifractor salsuginis DSM 16511]
          Length = 447

 Score = 42.3 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 72  RLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPYALQV 128
           R    + +  +  G +  +E +         I +                GV  P A++V
Sbjct: 111 RALGIEGKDIIFNGPYKPKEALKVAVEEGAKIHIDHLFEINDLEEIARELGVKIPVAIRV 170

Query: 129 --DTGF----NRLGLSLQ--EALDFTHNSFNKKLGQLSLIISH 163
             DTG     +R G + +  EA+D      +  L +L+ + SH
Sbjct: 171 NMDTGIYPQWSRFGFNYESGEAIDAIERIHSGGLLELTGLHSH 213


>gi|209884063|ref|YP_002287920.1| ornithine decarboxylase [Oligotropha carboxidovorans OM5]
 gi|209872259|gb|ACI92055.1| ornithine decarboxylase [Oligotropha carboxidovorans OM5]
          Length = 411

 Score = 42.3 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 22/170 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ +      ++R    VK N A      ++   L + G   F   +V E
Sbjct: 54  LVVDLDVVRDNYQTFAKALPDSRVFYAVKANPA-----PEVLTLLASLG-SCFDTATVPE 107

Query: 68  ---GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
               +                    +  +     L   + +V       K+         
Sbjct: 108 IEMALA---AGATPDRISFGNTIKKERDVARAYALGIRLFAVDCTAEVEKIARAAPGAKV 164

Query: 125 ALQV--DTG-----FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
             ++  D        +R  G   + A+D   +   +   +   I  H+  
Sbjct: 165 FCRILYDCAGAEWPLSRKFGCDPEMAVDVL-DLAKRLGLEPVGISFHVGS 213


>gi|327189543|gb|EGE56696.1| putative ornithine decarboxylase protein [Rhizobium etli CNPAF512]
          Length = 377

 Score = 42.3 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 28/200 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+H+      ++     VK N A      ++   L   G       V  +
Sbjct: 20  LVVDLDVVRDNFHAFRHAMPDSAIYYAVKANPA-----PEVLKLLAGLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++       A           +  +     L   + +V       K+          
Sbjct: 75  EMALE---AGATAARISFGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVF 131

Query: 126 LQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            +V T         +R  G   Q A+D    +    L Q   +  H+             
Sbjct: 132 CRVLTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGL-QSYGVSFHVGSQMTK------- 183

Query: 178 QLERFRTLISHYKGIEASLA 197
            ++ + + ++  K +  SLA
Sbjct: 184 -VDAWDSALADAKRVFVSLA 202


>gi|302335298|ref|YP_003800505.1| Orn/DAP/Arg decarboxylase 2 [Olsenella uli DSM 7084]
 gi|301319138|gb|ADK67625.1| Orn/DAP/Arg decarboxylase 2 [Olsenella uli DSM 7084]
          Length = 401

 Score = 42.3 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 13/155 (8%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           DL AL     ++   L  + R    +K N        ++ A    G +   V S  E   
Sbjct: 25  DLVALSARLAAVREILGPSVRLCYSIKAN------PFLSRAAAECGYE-LEVCSPGELDV 77

Query: 71  LRLYTPQARIFVLYGIH--PGQEKIIFDTNL-IPVISSVPQLTFYS-KLMSCGVSHPYAL 126
            R    +A   V  G+       +   D  + +    S  Q      +    G+  P  L
Sbjct: 78  CRGLGIEAPAIVYSGVCKGEADVRAALDYGVGVLTAESPRQFELVEQEARRRGLRVPVLL 137

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
           +++ G ++ G+S  +      +       +L  I 
Sbjct: 138 RLNGG-SQFGMSRGDLERIVRDREGYGAAELVGIH 171


>gi|317508842|ref|ZP_07966483.1| alanine racemase domain-containing protein [Segniliparus rugosus
           ATCC BAA-974]
 gi|316252866|gb|EFV12295.1| alanine racemase domain-containing protein [Segniliparus rugosus
           ATCC BAA-974]
          Length = 234

 Score = 42.3 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 19/192 (9%)

Query: 49  APALYNAGVQDFFVTSVEEG----VKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVI 103
           A  LY  G ++F  +  +E      +L    P  R  ++  I   + K I    +++  +
Sbjct: 46  AALLYELGCREFGESRDQEARAKVAELGDSVPGVRWHMIGQIQRNKAKSIASWAHVVQSV 105

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFN----RLGLSLQEALDFTHNSFNKKLGQLSL 159
                +  + K +S     P  + V    +    R G   ++           +  +L  
Sbjct: 106 DEARLVAAFEKAVSERGGQPLDVLVQVSLDGDGRRSGALPEDVPALADQIAASEHLRLQG 165

Query: 160 IISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPN-----YHFQLTR 214
           +++    A DP+        ER   L    K    S  + S  + G             R
Sbjct: 166 LMAIPPLAADPAQAY-----ERLARLHDALKADHPSATTLSAGMSGDFATAIAAGSSCVR 220

Query: 215 PGISLYGGTDKI 226
            G ++ G     
Sbjct: 221 VGTAILGARPIP 232


>gi|269128052|ref|YP_003301422.1| alanine racemase domain-containing protein [Thermomonospora curvata
           DSM 43183]
 gi|268313010|gb|ACY99384.1| alanine racemase domain protein [Thermomonospora curvata DSM 43183]
          Length = 397

 Score = 42.3 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 44/183 (24%), Gaps = 44/183 (24%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA-----------PALYNAGV 57
             +DL A + N   +   +G                  ++A             L   G 
Sbjct: 19  AIVDLDAFRANAADLVRRAGGKPI--------------RVASKSVRCRELLTQVLAMDGF 64

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN------LIPVISSVPQLTF 111
           +     ++ E + L  +     I V Y             +      +  ++     L  
Sbjct: 65  RGVMAFTLPEALWLAAHRVSDDILVAYPTVDRTALAELAADEHALSVITVMVDCAEHLEL 124

Query: 112 Y-SKLMSCGVSHPYALQVDTGFN------RLGL------SLQEALDFTHNSFNKKLGQLS 158
                          + +D G+       R+G          +A +            L+
Sbjct: 125 IGQAAARAKAPLRVCIDIDAGYRLLGGRVRIGALRSPIHDPAQAAELARRIERNPALHLA 184

Query: 159 LII 161
            ++
Sbjct: 185 GLM 187


>gi|170747958|ref|YP_001754218.1| alanine racemase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654480|gb|ACB23535.1| alanine racemase domain protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 373

 Score = 42.3 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 37/173 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPA------------LYNAG 56
           L +DL AL+ N   +            +K      G    A A            +   G
Sbjct: 21  LLVDLDALERNVDKLGRF---------MKA----HGLRHRAHAKTHKSSDITVLQIERGG 67

Query: 57  VQDFFVTS--VEEGVKLRLYTPQARIFVLY-GIHPGQEKIIFD----TNLIPVISSVPQL 109
                V    V E   L     +  + V    + P + + +        ++  +  +  +
Sbjct: 68  A--CGVCCQKVSEAEALVSAGIR-DVLVSNQVVAPKKIERLAALATRARVLVCVDDLGNV 124

Query: 110 TFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLI 160
              S      GV+    +++D G  R G++  E A+              + +
Sbjct: 125 DDLSAAAVKYGVTLECLVEIDVGAGRCGVAPGEPAVAIAQKIAAAPGLSFAGL 177


>gi|86359219|ref|YP_471111.1| ornithine decarboxylase protein [Rhizobium etli CFN 42]
 gi|86283321|gb|ABC92384.1| probable ornithine decarboxylase protein [Rhizobium etli CFN 42]
          Length = 506

 Score = 42.3 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 25/204 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  ++ N+H+      ++     VK N A      ++   L   G       V  +
Sbjct: 149 LVVDLDVIRENFHAFRHAMPDSAIYYAVKANPA-----PEVLKLLAGLGSNFDCASVAEI 203

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++       A           +  +     L   + +V       K+          
Sbjct: 204 EMALE---AGATAARISYGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVF 260

Query: 126 LQVDTG-------FNR-LGLSLQEALD---FTHNSFNKKLGQLSLIISHLACADDPSSHV 174
            +V T         +R  G   Q A+D   + H    +  G    + S +   D   S +
Sbjct: 261 CRVLTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGLQSYGVSFHVGSQMTKVDAWDSAL 320

Query: 175 NSVQLERFRTLISHYKGIEASLAS 198
                  F  L     GI   + +
Sbjct: 321 ADA-KRVFVQLAKQ--GIHLQMVN 341


>gi|93005125|ref|YP_579562.1| hypothetical protein Pcryo_0294 [Psychrobacter cryohalolentis K5]
 gi|92392803|gb|ABE74078.1| Protein of unknown function UPF0001 [Psychrobacter cryohalolentis
           K5]
          Length = 276

 Score = 42.3 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 79/260 (30%), Gaps = 52/260 (20%)

Query: 1   MHSNEFLR-LKIDLTA--------LKNNWHSMN-----------ALSGNARTAAVVK--- 37
           M S + ++ + IDL+         L  NW  +                +    AV K   
Sbjct: 27  MSSQQVIKNVAIDLSNNDEAEVQHLTENWQQVKTQVVQACEQTLRAPSSVTLLAVSKTKS 86

Query: 38  DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFV--LYGIHPGQE 91
                    ++   L   G  DF    ++E ++    LR       I    +  I   + 
Sbjct: 87  A--------EMVATLARQGQHDFGENYLQEAIEKIQLLREQVGCKHIVWHYIGSIQRNKT 138

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDF 145
           + I +      + ++ +     +L          ++    + +D   ++ G   ++  + 
Sbjct: 139 RDIAEHFDW--VQTLERDIIAKRLNDQRPAELPPLNVLIQINIDNEDSKSGCLPEQLPEL 196

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSSG 201
                N +  QL  ++         ++       + F  +   +  +      S+  S  
Sbjct: 197 LTAIKNYERLQLRGLM---IIPAKANTDAFKRTKQLFDDIKRTHPELSQWDTLSMGMSDD 253

Query: 202 ILLGPNYHFQLTRPGISLYG 221
           +         + R G +++G
Sbjct: 254 MTDAIASGTTMVRVGTAIFG 273


>gi|239834177|ref|ZP_04682505.1| alanine racemase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822240|gb|EEQ93809.1| alanine racemase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 354

 Score = 42.3 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 62/228 (27%), Gaps = 32/228 (14%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFVTS- 64
           ID+  +K N   + A +       V     +K           A     AG     +T  
Sbjct: 17  IDIDRVKANIARVQAHADA---IGVKLRPHIKT----HKLPFFAKMQVEAGAA--GITCQ 67

Query: 65  -VEEGVKLRLYTPQARIFV---LYGIHPGQEKIIFDTNLIPVI---SSVPQLTFYSKLMS 117
            + E   +        IF+   + G             +   +   +S       ++   
Sbjct: 68  KLGEAEVMADAGLT-DIFLPYNILGREKLDRLHALHQRVTLSVTVDNSTSLAGLAARFAD 126

Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                   ++ DTG  R G+ +  EAL+               +++    A  P     +
Sbjct: 127 EKHPLKVLVECDTGMGRCGVQTPAEALELARIIDQSAGLGFGGLMT-YPAAGKPD---QA 182

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT----RPGISLY 220
            Q       +    G+     SS G                RPG  +Y
Sbjct: 183 EQWLYSARELLDANGLSCETISSGGTPDMWRKPSDSVVTEYRPGTYIY 230


>gi|124265522|ref|YP_001019526.1| low-specificity D-threonine aldolase [Methylibium petroleiphilum
           PM1]
 gi|124258297|gb|ABM93291.1| low-specificity D-threonine aldolase [Methylibium petroleiphilum
           PM1]
          Length = 372

 Score = 42.3 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 35/170 (20%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNART-----AAVVKDNAYGLGCEKIAPALYNA 55
           ++ID  A + N  +M+A +         +A+T      A            ++A      
Sbjct: 22  VEID--AFERNLAAMDAFARSHGVRLRPHAKTHKCSAIA----------LHQVAR----- 64

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF----DTNLIPVISSVPQLTF 111
           G     V  V E + L     +        I P +   +     D  L   + SV  +  
Sbjct: 65  GAVGVCVQKVGEALALAAGGVRDVFVSNEVIAPTKLARLAALPSDVQLAIAVDSVVGIER 124

Query: 112 YSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
            +  +   G      +++D G  R G+   EA             + + +
Sbjct: 125 LAAAIQASGRQIDVYVEIDAGQGRCGVPAAEAGALARQVVAHDGLRFAGL 174


>gi|296534868|ref|ZP_06897198.1| YggS family pyridoxal phosphate enzyme [Roseomonas cervicalis ATCC
           49957]
 gi|296264804|gb|EFH11099.1| YggS family pyridoxal phosphate enzyme [Roseomonas cervicalis ATCC
           49957]
          Length = 269

 Score = 42.3 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 34/183 (18%)

Query: 16  LKNNWHSMNALSG-----------NARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFF 61
           + +N   +                + R  AV K    ++       +A AL  AG   F 
Sbjct: 50  IADNLKRIQDRIASAAARAGRPAGSVRLVAVSKFHPADS-------VAEAL-AAGQALFG 101

Query: 62  VTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
              V+E       LR   P  R+ ++  +   + +      +  VI S+ +    + L  
Sbjct: 102 ENRVQEAAGKFPGLRAAHPDLRLHLIGALQTNKARDAV--RIADVIESLDRPKLAAALAE 159

Query: 118 C----GVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                       +QV+ G      G+  +   DF           +  ++       DP+
Sbjct: 160 AMRREARRPGLLVQVNIGREPQKAGIDPESLADFVAECREAHGLPVEGLMCIPPAEADPA 219

Query: 172 SHV 174
            H 
Sbjct: 220 PHF 222


>gi|56708932|ref|YP_164977.1| threonine aldolase, low-specificity [Ruegeria pomeroyi DSS-3]
 gi|56680617|gb|AAV97282.1| threonine aldolase, low-specificity [Ruegeria pomeroyi DSS-3]
          Length = 387

 Score = 42.3 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 65/225 (28%), Gaps = 49/225 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYN--A 55
           L +DL AL+ N   M   +         K      G              +A  L     
Sbjct: 32  LVLDLDALERNVKKMGDYA---------KA----HGMRHRVHGKMHKSVDVAK-LQERLG 77

Query: 56  GVQDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDT-----NLIPVISSVP 107
           G     V    V E         +  + V   +  P +   +         +I  +  + 
Sbjct: 78  GA--VGVCCQKVSEAEVFVRGGIK-DVLVSNQVRDPLKIDRLAQLPKLGSRIIVCVDDLA 134

Query: 108 QLTFYSKLM-SCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI----- 160
            +   S      G      +++D G  R G+ + Q+ +         +  + + I     
Sbjct: 135 NVADLSAAALRHGTELEVLIEIDCGAGRCGVGTTQDVVAIARAVDAAENLKFTGIQAYQG 194

Query: 161 -ISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            + HL    +       + +E   + +   K  G++  L S  G 
Sbjct: 195 AMQHL-DKYEDRKAKLDIAIEMVESAVQGLKAVGLDPELVSGGGT 238


>gi|303250530|ref|ZP_07336727.1| hypothetical protein APP6_0100 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303251874|ref|ZP_07338045.1| hypothetical protein APP2_0195 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247027|ref|ZP_07529081.1| hypothetical protein appser2_260 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307251572|ref|ZP_07533479.1| hypothetical protein appser6_960 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649304|gb|EFL79489.1| hypothetical protein APP2_0195 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650518|gb|EFL80677.1| hypothetical protein APP6_0100 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306856479|gb|EFM88628.1| hypothetical protein appser2_260 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306861036|gb|EFM93042.1| hypothetical protein appser6_960 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 227

 Score = 42.3 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 18/190 (9%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDT-NLIP 101
            +       AG   F    V+EGV+   Y  Q           +   + +++ +  + I 
Sbjct: 37  VEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQ 96

Query: 102 VISSVPQLTFYSKLMSCGV---SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
            +  +      S   S      +    + +    ++ G+  +E  +           +L 
Sbjct: 97  TVDRLKIAERLSAQRSANKAPLNVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLR 156

Query: 159 LIIS--HLACADDPSSHVNSVQLERFRTLISHYKGIEA-SLASS----SGILLGPNYHFQ 211
            +++        +          + F  L   ++GI+  S+  S    + I  G      
Sbjct: 157 GLMAIPKPESEPEQQKIALRKMRQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGST---- 212

Query: 212 LTRPGISLYG 221
           + R G +++G
Sbjct: 213 MVRIGTAIFG 222


>gi|311745853|ref|ZP_07719638.1| putative amino acid racemase [Algoriphagus sp. PR1]
 gi|126576056|gb|EAZ80334.1| putative amino acid racemase [Algoriphagus sp. PR1]
          Length = 357

 Score = 42.3 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 95/264 (35%), Gaps = 42/264 (15%)

Query: 95  FDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL 154
            D +L   ++++  ++   + +     H   + V+TG  R G+  ++ ++F    F    
Sbjct: 92  ADVSLNSELNTIHWIS--EEAVLQKKKHKIIIMVETGDLREGVMGEQLVEFYSQIFQLPN 149

Query: 155 GQLSLIISHLACADDPSSHVNSV-QLERFRTLIS--HYKGIEASLASSSGILLGPNYHF- 210
            ++  + ++L C +      + + QL  ++ +I     K I    A +S  +     H  
Sbjct: 150 IEVIGLGTNLNCLNGVMPSTDKLIQLSLYKQIIELKFNKKIPWVSAGTSVTIPLMLTHQL 209

Query: 211 ----QLTRPGISLYGGTDKINK---SHPMQTVVTAEARIILIRK---ALAGELVSYGGQK 260
                  R G +LY G D   +         V      I+ +++      G L +    +
Sbjct: 210 PLGINHFRVGETLYFGLDLFEEKLIEGMQGDVFVLHTEIVEMQEKPMLPVGNLANNPQGE 269

Query: 261 KLTRDSLI-------AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313
               D+ +       A+  IG  D  P  L   D                   + ILG  
Sbjct: 270 TAEIDTELYGQSSFRAILDIGLLDVDPKYLIPKD-----------------QGIEILGA- 311

Query: 314 TMDMTMFDIT-DSLSIEVGDYIQI 336
           + DM + ++  +  + +VGD +  
Sbjct: 312 SSDMIIINLGKNLQNYKVGDSLTF 335


>gi|154246083|ref|YP_001417041.1| Orn/DAP/Arg decarboxylase 2 [Xanthobacter autotrophicus Py2]
 gi|154160168|gb|ABS67384.1| Orn/DAP/Arg decarboxylase 2 [Xanthobacter autotrophicus Py2]
          Length = 376

 Score = 42.3 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 66/221 (29%), Gaps = 35/221 (15%)

Query: 4   NEFLR--------LKIDLTALKNNWHSMNALSGNARTAAVVKDN--AYGLGCEKIAPALY 53
            EFLR        + +DL  ++ N+ +      + R    VK N  A       I  AL 
Sbjct: 6   REFLRTRREDGPCVVVDLDVVRTNYQAFARALPDTRVYYAVKANPDA------AILQALE 59

Query: 54  NAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
             G   F   SV E   +      A           +  I     L   + +V       
Sbjct: 60  ELG-SSFDCASVGEIEMVLATGAGAERISFGNTIKKERDIERAFRLGVRLFAVDSYEEAE 118

Query: 114 KLMSCGVSHPYALQV---DTG----FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLA 165
           K+           ++     G     +R  G   + A D   ++    L     +  H+ 
Sbjct: 119 KIARVAPHAKVFCRILCDGAGAEWPLSRKFGCEPEMAADVLEHAHRLGLAA-YGVSFHVG 177

Query: 166 CAD-----DPSSHVNSVQLERFRTLISHYKGIEASLASSSG 201
                      +  ++ Q+  FR      +GI  S+ +  G
Sbjct: 178 SQQKNVHAWDGALASAAQI--FRACAE--RGISLSMVNLGG 214


>gi|83816534|ref|YP_446532.1| metal-activated pyridoxal enzyme [Salinibacter ruber DSM 13855]
 gi|83757928|gb|ABC46041.1| metal-activated pyridoxal enzyme [Salinibacter ruber DSM 13855]
          Length = 388

 Score = 42.3 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 31/207 (14%)

Query: 9   LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L I+ + L+ N  +M A        L  + +T               IA      G +  
Sbjct: 11  LLIEQSRLQENLAAMQATADANDVTLRPHVKT----------HKSVAIAEQQQQRGAEGL 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGI--HPGQE---KIIFDTNLIPVISSVPQLTFYSKL 115
            V +V E            + V Y +   P  E    +     L   + ++      S +
Sbjct: 61  TVATVHEAETFVAAGFD-DVRVAYPVVGRPKHERLRALRAAATLSFTVDTMAGADQASAV 119

Query: 116 MS-CGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD-P 170
            +         ++VD G  R G+       A+    +  +    QL+ I++H   A D P
Sbjct: 120 YAGADNPVEVLMEVDVGHGRCGVHWADDAAAVALAQHIASLPGLQLAGILTHAGQAYDGP 179

Query: 171 SSHVNSVQLERFRTLISHYKGIEASLA 197
           S    +      R    H +    S+A
Sbjct: 180 SDDETAK--GALRRAARHERDRMLSVA 204


>gi|254414846|ref|ZP_05028610.1| conserved hypothetical protein TIGR00044 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178335|gb|EDX73335.1| conserved hypothetical protein TIGR00044 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 223

 Score = 42.3 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 25/157 (15%)

Query: 20  WHSMNA-LSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV----KL 71
              +   L  + R  AV   V          +     Y AGV+DF  + V+E      +L
Sbjct: 9   IAQIRQQLPPDVRLIAVTKRV--------SVEAIREAYQAGVRDFGESQVQEAAAKQDEL 60

Query: 72  RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY------A 125
           +   P     ++  +   + K          I S   L    +L                
Sbjct: 61  QDL-PDITWHLIGHLQSNKAKKALTQ--FQWIHSCDSLKLAQRLNQLACELAVSPQICLQ 117

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
           +++    ++ G ++ E L+        K  Q+  +++
Sbjct: 118 VKIMPDPHKYGWTIPELLEALPELDQCKALQIQGLMT 154


>gi|52548657|gb|AAU82506.1| conserved hypothetical protein [uncultured archaeon GZfos18B6]
          Length = 224

 Score = 42.3 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 47/144 (32%), Gaps = 11/144 (7%)

Query: 51  ALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDT-NLIPVISSV 106
           A   AG+       ++E    R +    R+        +   + K   +  +LI  I S 
Sbjct: 38  AAIEAGITIVGENYIQEAE--RAFEVIGRVVNWHFIGHLQRNKVKKAVELFDLIETIDSF 95

Query: 107 PQLTFYSKLM-SCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISH 163
           P     +++    G   P  ++V++G      G+  ++  +           ++  +++ 
Sbjct: 96  PIAEEINRVSSKIGKIMPILIEVNSGREPQKFGVFPEDVEELVVKISALASVKIVGLMTM 155

Query: 164 LACADDPSS--HVNSVQLERFRTL 185
               +D            E F  +
Sbjct: 156 GPYEEDIEKSRSYFRAAKEIFERI 179


>gi|221128049|ref|XP_002155398.1| PREDICTED: similar to CG1983 CG1983-PA [Hydra magnipapillata]
          Length = 232

 Score = 42.0 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 77/240 (32%), Gaps = 41/240 (17%)

Query: 16  LKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           + +N H++      A           R  AV K               ++AG + F    
Sbjct: 4   IADNLHAVAQRIAQACTQSGRPADSVRLLAVSKTFG-----PDAVQQAFDAGQRAFGENY 58

Query: 65  VEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           ++E V     L     +     +  I   + +++ +      + +V +L    +L     
Sbjct: 59  IQEAVDKISALSALPIE--WHCIGPIQSNKTRLVAEH--FQWVQTVDRLKIAQRLSDQRP 114

Query: 121 SHP------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
            H         + VD G  + G++ Q+A+            QL  I+    C  +P+   
Sbjct: 115 PHLPPLQVCIQVNVDGGPTKSGVTPQDAVALALEVAQLPRLQLRGIM----CIPEPAPDF 170

Query: 175 NSVQL------ERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227
            + +         F  +++    ++  S+  S  +         + R G +++G      
Sbjct: 171 VAARAVFMSAKAVFDAVVAQGLPLDTLSMGMSGDLDAAVAGGSTMVRVGSAIFGARPTPA 230


>gi|325275650|ref|ZP_08141548.1| alanine racemase domain protein [Pseudomonas sp. TJI-51]
 gi|324099216|gb|EGB97164.1| alanine racemase domain protein [Pseudomonas sp. TJI-51]
          Length = 231

 Score = 42.0 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 57/200 (28%), Gaps = 30/200 (15%)

Query: 50  PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPVISSV 106
             LY AGV DF    ++E +  +         +      I   + K I +      + SV
Sbjct: 44  RELYAAGVCDFGENYLQEALTKQQALGDLP-LIWHFIGPIQSNKTKAIAEHFDW--VHSV 100

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLI 160
            +L    +L     +    L +    N      + G +  E              +L  +
Sbjct: 101 DRLKIAQRLSEQRPAGLAPLNICLQVNVSGEDSKSGCAAAELPALAKAVAALPNLRLRGL 160

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQ 211
           +     A    +   + Q   F +L +  +     L      L     H           
Sbjct: 161 M-----AIPEPTDDRAAQEAAFASLRNLLEQQHLGLD----TLSMGMSHDLEAAIAQGAT 211

Query: 212 LTRPGISLYGGTDKINKSHP 231
             R G +L+G    +N    
Sbjct: 212 WVRIGTALFGARAPLNPGQG 231


>gi|146340130|ref|YP_001205178.1| putative amino acid processing-like protein [Bradyrhizobium sp.
           ORS278]
 gi|146192936|emb|CAL76943.1| putative amino acid processing enzyme-related protein (aldolase or
           racemase) [Bradyrhizobium sp. ORS278]
          Length = 359

 Score = 42.0 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 69/221 (31%), Gaps = 56/221 (25%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA----------AVVKDNAYGLGCEKIAPALYNAGVQ 58
             ID+  ++ N   + A    A  A           V+            A     AG Q
Sbjct: 18  AVIDMDKVERNIARIQAQCAAAGVANRPHIKTHKSPVL------------AKLQIEAGAQ 65

Query: 59  DFFVTS--VEEGVKLRLYTPQARIFV------------LYGIHPGQEKIIFDTNLIPVIS 104
              +T   + E   +        I +            L  +    +  +   N   VI+
Sbjct: 66  --GITCQKIGEAEIMADAGIN-NILISYNLIGEEKMARLAALQAKADMTVAADN-ATVIA 121

Query: 105 SVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISH 163
            +PQ          G +    ++ DTG  R G+    EA+         +  + +  + +
Sbjct: 122 GLPQ-----AAKQSGRTLSVVVECDTGRKRAGVETPAEAIQLARQIKASEGLRFAGFMLY 176

Query: 164 LACADDPSSHVNSVQLERF-RTLIS--HYKGIEASLASSSG 201
              +    +       +RF    ++    +G+EAS+ S+ G
Sbjct: 177 PTESGWDDA-------QRFYDEALAGVRAEGLEASIVSTGG 210


>gi|190407136|gb|EDV10403.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|207345504|gb|EDZ72307.1| YGL196Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146315|emb|CAY79572.1| Dsd1p [Saccharomyces cerevisiae EC1118]
 gi|323337763|gb|EGA79007.1| Dsd1p [Saccharomyces cerevisiae Vin13]
 gi|323355143|gb|EGA86972.1| Dsd1p [Saccharomyces cerevisiae VL3]
          Length = 428

 Score = 42.0 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 82/250 (32%), Gaps = 45/250 (18%)

Query: 42  GLG---CEKIAPALYNAGVQDFFVTSVEEGVKL-----RLYT--PQARIFVLYGIHPGQE 91
           G G    ++   A+         V++++E  +L     R  +       + L    P   
Sbjct: 70  GHGLPLAKRTTRAIL--------VSTLKEAEELLNYQDRQCSDYIDDITYSLPCCVPEFI 121

Query: 92  KIIFD-----TNLIPVISSVPQLTFYSKLM--SCGVSHPYALQVDTGFNRLGLSLQ--EA 142
            ++ +      N    + ++  L         + G      ++VD G  R GL+    E 
Sbjct: 122 PLLSNLSRRVNNFQVFVDNIEHLENLKNFGRPASGKKWSVFIKVDMGTKRAGLAFDSPEF 181

Query: 143 LDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS 199
           L           K++ +     +H   +   S+ +N  Q      L+   K +     +S
Sbjct: 182 LSLLKKLTSSEIKEVIEPYGFYAHAGHSYS-STSINDTQ----NLLMEEVKAV-----NS 231

Query: 200 SG-ILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELVS 255
           +  +L   +  F  ++  +S+ G T     +   +    V     +++   +   G    
Sbjct: 232 AAKVLCSVDPQFDPSKLTLSV-GATPTSNSLKLDNKSTLVKFVTTQLVSTLEIHCGNYCM 290

Query: 256 YGGQKKLTRD 265
           Y  Q+  T  
Sbjct: 291 YDLQQVATGC 300


>gi|317405225|gb|EFV85564.1| pyridoxal phosphate binding aldolase [Achromobacter xylosoxidans
           C54]
          Length = 382

 Score = 42.0 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 36/165 (21%)

Query: 19  NWHSMNALSGNARTAAVVKDNAYGLG-----------CEKIAPALYN--AGVQDFFVTSV 65
           N   +N      R  A       G G             ++A  +     G     V+++
Sbjct: 26  NIERLN------RLMA-------GHGVQLRPHLKTPKSIEVARRVMARPEGPA--AVSTL 70

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVP-QLTFYSKLMSCG 119
           +E  +         +    G+ P + + +        +L  V+ SV       ++ +  G
Sbjct: 71  QEAEQFAAAGVT-DLLYAVGVAPAKLERVLALRRGGVDLTVVVDSVEAAQAVAARALEEG 129

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISH 163
            + P  +++D   +R G+   +A      +      G L  +++H
Sbjct: 130 AAIPALIEIDCDGHRAGVQPGQAGQLLEIARTLHAAGCLRGVMTH 174


>gi|323142966|ref|ZP_08077674.1| hypothetical protein HMPREF9444_00282 [Succinatimonas hippei YIT
           12066]
 gi|322417239|gb|EFY07865.1| hypothetical protein HMPREF9444_00282 [Succinatimonas hippei YIT
           12066]
          Length = 368

 Score = 42.0 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 78/278 (28%), Gaps = 32/278 (11%)

Query: 14  TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72
             +  N +    ++  + R    VK         ++   L   G+  F   ++ E   + 
Sbjct: 20  DIIDQNINKAVNMAHTSERLWPHVKT----HKIPQMVNNLVKHGITKFKCATIAECEMV- 74

Query: 73  LYTPQARIFVLYGIHPGQEKIIF-------DTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124
             TP   I + Y +     K          +     +  ++ Q+   SK   C      +
Sbjct: 75  ANTPATDILLAYPLIGPNIKRYIKLQQTFREKKFYAIGDNLEQIKLLSKEAVCTNEIIHF 134

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS---------HVN 175
            + V+ G NR G+ +++         N K  QL  +  H    +                
Sbjct: 135 FIDVNMGMNRTGVPIEKLNLLADGIKNLKNIQLCGL--HCYDGNHNDKDLIKRRESVDTT 192

Query: 176 SVQLERFRTLISHYKGIEASLAS--SSGILLGPNYHFQLTRPGISL---YGGTDKINKSH 230
             QL      I+    I   + +  S        Y      PG      YG    +    
Sbjct: 193 MNQLMPIIEKINKDFNINLIIIAGGSPAFPCYDKYEKVYCSPGTLFVNDYGYECNL-PDM 251

Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
             Q       R+I          V  G +   +   ++
Sbjct: 252 KYQPAACVLTRVIS-HPNNGIFTVDCGYKAIASDPKVL 288


>gi|254447389|ref|ZP_05060855.1| conserved hypothetical protein TIGR00044 [gamma proteobacterium
           HTCC5015]
 gi|198262732|gb|EDY87011.1| conserved hypothetical protein TIGR00044 [gamma proteobacterium
           HTCC5015]
          Length = 234

 Score = 42.0 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 22/161 (13%)

Query: 48  IAPALYNAGVQDFFVTSVEEGVK-LRLYTPQARIFVLYGIHPGQE-----KIIFDTNLIP 101
           +  ALY+ G +DF    +++ ++ +        I   +    GQ        I       
Sbjct: 45  MVKALYDKGQRDFGENYLQDALEKIEALGTLDEI---HWHFIGQIQSNKTATIAQYFDW- 100

Query: 102 VISSVPQLTFYSKLMS------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155
            + SV +     +L          ++    + +D    + G++ ++A             
Sbjct: 101 -VHSVDRFKIARRLSEQRPERLSALNLCLQINIDNEPQKGGVAPEDAAKLAREIETLPNL 159

Query: 156 QLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           +L  ++   A     +S     QL  F++L   ++ I++ L
Sbjct: 160 RLRGLM---AIPKPANSE--EQQLASFKSLEDLFQQIKSQL 195


>gi|145248876|ref|XP_001400777.1| hypothetical protein ANI_1_1146124 [Aspergillus niger CBS 513.88]
 gi|134081450|emb|CAK46463.1| unnamed protein product [Aspergillus niger]
          Length = 455

 Score = 42.0 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 31/154 (20%)

Query: 47  KIAPALYNAGVQ-----DFFVTSVEEGVKL-------RLYTPQARIFVLYGIH--PGQEK 92
           ++A     AG       +F ++++ EG  L       R    +    VLYGI   P Q  
Sbjct: 67  QVAR--LQAGEDKSIPANFVISTLLEGETLLPLFKDLRESGRKVN--VLYGIPLVPSQVP 122

Query: 93  IIFDT-------NLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQ---- 140
            +          ++  +I    Q+ + ++     G +    L+VD+G++R GL       
Sbjct: 123 RLAALARELGEGSISVMIDHPDQVQYLTEFRQLAGHAAAVFLKVDSGYHRAGLPPSMLNK 182

Query: 141 -EALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
              ++       +    L  + SH + +    + 
Sbjct: 183 GGLIEKVIEGEREGTLVLLGVYSHNSLSYGGDTP 216


>gi|99082541|ref|YP_614695.1| D-3-hydroxyaspartate aldolase [Ruegeria sp. TM1040]
 gi|99038821|gb|ABF65433.1| D-3-hydroxyaspartate aldolase [Ruegeria sp. TM1040]
          Length = 387

 Score = 42.0 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 57/208 (27%), Gaps = 41/208 (19%)

Query: 9   LKIDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLG----CEKIAPALYN--AGVQ 58
           L +DL AL+ N   M     A     R            G       +A  L     G  
Sbjct: 32  LVLDLDALERNIKKMGDYARAHGMRHRV----------HGKMHKSVDVAK-LQERLGGA- 79

Query: 59  DFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVPQLT 110
              V    V E         +  + V   +  P +   +          I  +     + 
Sbjct: 80  -IGVCCQKVSEAEVFARGGIK-DVLVSNQVRDPAKIDRLARLPKLGARTIVCVDDPANVA 137

Query: 111 FYSKLMSC-GVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI------IS 162
             S             +++D G  R G+ + ++ ++           + + I      + 
Sbjct: 138 DLSAAAQKHDTEIECFVEIDCGAGRCGVTTTEDVVEIAQAIDAAPGLKFTGIQAYQGAMQ 197

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYK 190
           HL  + +       V + + R  +   K
Sbjct: 198 HL-DSYEARKEKLDVAIAQVRDAVEGLK 224


>gi|260887799|ref|ZP_05899062.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sputigena ATCC
           35185]
 gi|260862475|gb|EEX76975.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sputigena ATCC
           35185]
          Length = 236

 Score = 42.0 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 61/219 (27%), Gaps = 28/219 (12%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----L-RLYT 75
            ++       R  AV K      G  ++       GV D     ++E  +    L R   
Sbjct: 26  RTIADAKEPVRLVAVTK----NHGVAEM-REAIAHGVTDIGENRIQEAREKFETLERTAV 80

Query: 76  PQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTG-- 131
                 ++  +   + K      +LI  + ++       K     G      +QV+    
Sbjct: 81  WH----LIGHLQKNKAKYAVKLFDLIHSVDTLELAEALDKEAGKSGKRQDVLVQVNLAKE 136

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191
            ++ G+  ++              +L  ++      +            R   +    K 
Sbjct: 137 ASKSGIYEEDLQPLLEAVDALPHLRLCGLMC--IAPNYDEVEETRPLFRRMYEIFQRTKE 194

Query: 192 IEASLAS----SSGILLGPNYHF----QLTRPGISLYGG 222
                A+    S G+             + R G +++G 
Sbjct: 195 FPWKTANINYLSMGMTHDYRIAVEEGANIVRVGTAIFGP 233


>gi|291618616|ref|YP_003521358.1| Hypothetical Protein PANA_3063 [Pantoea ananatis LMG 20103]
 gi|291153646|gb|ADD78230.1| Hypothetical Protein PANA_3063 [Pantoea ananatis LMG 20103]
          Length = 423

 Score = 42.0 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 24/162 (14%)

Query: 14  TALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALY-----NAGVQDFFVTSVEE 67
           +AL+NN   + A         A         G   +APA+        G       +  +
Sbjct: 55  SALENNLRQLAAFCQEKGVMLAA-------HGKTSMAPAVLRRAVTQGGAWGISAATPAQ 107

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIF-------DTNLIPVISSVPQLTFYSK-LMSCG 119
              LR +  +        + PG  + I        D   +  + S+  +T   + L    
Sbjct: 108 VRALRHFGIRNVFLANECVDPGGIRWIGEWQRRNPDHGFLCYVDSLAGVTLLEQNLGDTA 167

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI 160
           ++    + +  G  R G  + +E L         +   L  +
Sbjct: 168 IAVLIEVSIPGG--RTGCRTEEEVLAIAERIAQSRHLHLVGV 207


>gi|66043744|ref|YP_233585.1| hypothetical protein Psyr_0477 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254451|gb|AAY35547.1| Protein of unknown function UPF0001 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 228

 Score = 42.0 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 50/240 (20%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           YNAG++DF 
Sbjct: 4   IAANISTLEQRIRDAALAAERDPASV--------GLLAVSKTKPASDLREAYNAGLRDFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELSDLPLCWHFIGPIQSNKTRAIAENFDW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + V    ++ G + Q+              +L  ++   A  +     
Sbjct: 114 PEALEPLNICIQVNVSGEASKSGCTPQDLPALAATIIALPRLRLRGLM---AIPEPTDDP 170

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQLTRPGISLYGGTD 224
             + Q   F  + +  + +  +L      L     H             R G +L+G  D
Sbjct: 171 --AAQDASFAAVRALQEQLNLALD----TLSMGMSHDLEAAIAQGATWVRIGTALFGARD 224


>gi|260061620|ref|YP_003194700.1| D-threonine aldolase, metal-activated pyridoxal enzyme
           [Robiginitalea biformata HTCC2501]
 gi|88785752|gb|EAR16921.1| D-threonine aldolase, metal-activated pyridoxal enzyme
           [Robiginitalea biformata HTCC2501]
          Length = 377

 Score = 42.0 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 10/138 (7%)

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII---FDT---NLIPVISSVPQL 109
           G+  F   ++ E   L        +     + P QE+++             ++     L
Sbjct: 71  GIDRFKCATIAEAELLGSLGAGDILLAYQPVGPDQERLLRLQAAYPGVRFAALVDHEETL 130

Query: 110 TFYSKLM-SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACA 167
               +L  S        L ++TG +R G+     A             +   +  H    
Sbjct: 131 KALGELATSHNAQIRLYLDLNTGMDRTGIVPGAAAAALYRKIAAHPHLEACGL--HAYDG 188

Query: 168 DDPSSHVNSVQLERFRTL 185
            +  +  +  Q    +  
Sbjct: 189 HNRQTDTSERQAAADKAF 206


>gi|296133623|ref|YP_003640870.1| alanine racemase domain protein [Thermincola sp. JR]
 gi|296032201|gb|ADG82969.1| alanine racemase domain protein [Thermincola potens JR]
          Length = 230

 Score = 42.0 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 53/245 (21%)

Query: 8   RLKIDLTALKNNWHSMN----ALSGNARTAAV--------VKDNAYGLGCEKIAPALYNA 55
            L+ +L  ++ N +           + +  AV        +K               +  
Sbjct: 4   WLRTNLEQIRRNINEAAYKSGRKPEDIKLIAVSKTVPMETIKA-------------AWEM 50

Query: 56  GVQDFFVTSVEEGVKLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL--- 109
           GV DF    V+E   L       P+A+  ++  +   + K I D   + +I S+      
Sbjct: 51  GVTDFGENRVQE---LTEKFNELPEAKWHLIGHLQKNKVKYIVDK--VVLIHSLDSYPLA 105

Query: 110 -TFYSKLMSCGVSHPYALQVDTGFNRL--GLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
                + ++ G      +QV+        GL L E  DF +   +     +  +++    
Sbjct: 106 EEINKRAVARGKCLDVLIQVNVAREPTKFGLDLSEVDDFINAVKDLPGLAVKGLMTIAPF 165

Query: 167 ADDPS--SHVNSVQLERFRTLI------SHYKGIEASLASSS--GILLGPNYHFQLTRPG 216
             DP     V     ++F  L       +  K +   +++     I  G      L R G
Sbjct: 166 VGDPEAVRPVFRELKKKFDALKTMEIPSAEMKYLSMGMSNDYRIAIEEGA----NLVRIG 221

Query: 217 ISLYG 221
             ++G
Sbjct: 222 TRIFG 226


>gi|320162128|ref|YP_004175353.1| hypothetical protein ANT_27270 [Anaerolinea thermophila UNI-1]
 gi|319995982|dbj|BAJ64753.1| hypothetical protein ANT_27270 [Anaerolinea thermophila UNI-1]
          Length = 370

 Score = 42.0 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 34/194 (17%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104
              +A    + G  D  +      V LR                    +     L  ++ 
Sbjct: 65  SVDMAKYFADCGWDDITLAFP---VNLRQL-------------DEIAHLAERIRLGVLVE 108

Query: 105 SVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLII 161
           SV  +    + +         ++VD G NR G++  +   A             +L+ ++
Sbjct: 109 SVETVQALGERVRA--PLAVWIKVDVGANRTGIAWDDVETASALVKTCQAYPALRLNGLL 166

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
           +H        +   +   E +R  +S  +            L        L +  I   G
Sbjct: 167 TH--AGQTYQAAYPAQVEEIYRQSLSKLQ-----------SLRHVLEQQGLAQSLILSVG 213

Query: 222 GTDKINKSHPMQTV 235
            T   +     +  
Sbjct: 214 DTPSSSIVQDFRPA 227


>gi|71065945|ref|YP_264672.1| D-3-hydroxyaspartate aldolase [Psychrobacter arcticus 273-4]
 gi|71038930|gb|AAZ19238.1| D-3-hydroxyaspartate aldolase [Psychrobacter arcticus 273-4]
          Length = 383

 Score = 42.0 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 65/222 (29%), Gaps = 43/222 (19%)

Query: 9   LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNA--GVQ 58
           L +DL AL+ N   M             + +                +   L     G  
Sbjct: 28  LILDLDALERNVKKMGDYAKAHNMRHRSHGKM----------HKSVDV-QNLQEELGGA- 75

Query: 59  DFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDT-----NLIPVISSVPQLT 110
              V    V E         +  + V   + +P + + + +       +   +  +  + 
Sbjct: 76  -IGVCCQKVSEAEVFVRGGIK-DVLVSNQVRNPAKIERLANLPKLGSTITVCVDDIDNVA 133

Query: 111 FYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI------IS 162
             S      G      +++D G  R G++  EA ++        +  + + I      + 
Sbjct: 134 ELSAAATKAGTELNCYIEIDCGAGRCGVTTTEAVVEIAKAIDAAENLKFTGIQAYQGAMQ 193

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
           H+  +         + +++ +  I      G++    S  G 
Sbjct: 194 HM-DSFSDRKAKTQIAIDQVQEAIDALTEIGLKPEFVSGGGT 234


>gi|56964112|ref|YP_175843.1| hypothetical protein ABC2347 [Bacillus clausii KSM-K16]
 gi|56910355|dbj|BAD64882.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 229

 Score = 42.0 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 63/203 (31%), Gaps = 33/203 (16%)

Query: 15  ALKNNWHSMN-----------ALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDF 60
            +  N  ++                + R  AV   V            A     AG+ D 
Sbjct: 4   NVAENVANIKMRVRQACERSGRAIDDVRIIAVTKYV--------SVATAKQAVEAGIADI 55

Query: 61  FVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
               +E  ++ +     QAR+  +  +   + K I   N++  I S+ +L+   ++    
Sbjct: 56  GENRIEGALE-KAAAIGQARLHFVGSLQSRKVKNIV--NVVSCIHSLDRLSLAKEIDKRL 112

Query: 120 VSHP-----YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                      + V    ++ GLS  E   F +        ++  +++      +  +  
Sbjct: 113 EPGKTIDCFVQVNVSGEQSKNGLSPDEVRPFINELAAYPAVRVIGLMTM--APFEQDAER 170

Query: 175 NSVQLERFRTLISHYKGIEASLA 197
                 + R L    K  + S A
Sbjct: 171 TRPIFSKLRELRDQIKADKLSSA 193


>gi|116621130|ref|YP_823286.1| alanine racemase domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224292|gb|ABJ83001.1| alanine racemase domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 221

 Score = 42.0 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 77/230 (33%), Gaps = 29/230 (12%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA--PALYNAGVQDFFVTS 64
           +RL+I+  A                  AV K           +     Y+ G++DF    
Sbjct: 11  VRLRIERAA-----EHARRNPAEILLLAVTK-------IFPASAIREAYDLGLRDFGENY 58

Query: 65  VEE----GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           V+E      ++    P AR  ++  +   +     +  L   I +V       +L   G 
Sbjct: 59  VQEFEGKAPEV-AGLPGARFHLIGHLQSNKSSKAAE--LFHSIQTVDSAKLARRLNESGR 115

Query: 121 SHPYALQVD-TGFN-RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178
                ++V  +G + + G+   +  D    +       L  +++    ++DP +     +
Sbjct: 116 PLDVMIEVKLSGEDAKSGVDPAQLPDLIQATRACPNLNLRGLMTMPPWSEDPEAPRAIFR 175

Query: 179 LERFRTLISHYKGIEASLAS--SSGILLGPNYHFQLTRPGISLYGGTDKI 226
             R         G+   +++   + I  G        R G +L+G  +K 
Sbjct: 176 TLRELAAEHGLPGLSMGMSNDLETAIEEGSTC----VRVGTALFGRRNKP 221


>gi|90421008|ref|ZP_01228912.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334786|gb|EAS48562.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 224

 Score = 42.0 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 13/129 (10%)

Query: 43  LGCEKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTN 98
              + I P L  AG + F    V+E       LR   P+  + ++  +   +        
Sbjct: 39  HDADTILPVL-EAGQRIFGENKVQEAKAKWPALRERFPEVELRLIGPLQSNKAGEAVA-- 95

Query: 99  LIPVISSVPQLTFYSKLMSCGVSHPYA----LQVDTGFN--RLGLSLQEALDFTHNSFNK 152
           L  VI SV +     +L              +QV+TG    + G++ +EA+ F     ++
Sbjct: 96  LFDVIESVDREKIAKELAEEMAKQDRHPRLYVQVNTGEEDQKAGIAPREAVAFVERCRSE 155

Query: 153 KLGQLSLII 161
              ++  ++
Sbjct: 156 HGLRIEGLM 164


>gi|327394996|dbj|BAK12418.1| hypothetical protein PAJ_2338 [Pantoea ananatis AJ13355]
          Length = 423

 Score = 42.0 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 24/162 (14%)

Query: 14  TALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALY-----NAGVQDFFVTSVEE 67
           +AL+NN   + A         A         G   +APA+        G       +  +
Sbjct: 55  SALENNLRQLAAFCQEKGVMLAA-------HGKTSMAPAVLRRAVTQGGAWGISAATPAQ 107

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIF-------DTNLIPVISSVPQLTFYSK-LMSCG 119
              LR +  +        + PG  + I        D   +  + S+  +T   + L    
Sbjct: 108 VRALRHFGIRNVFLANECVDPGGIRWIGEWQRRHPDHGFLCYVDSLAGVTLLEQNLGDTA 167

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI 160
           ++    + +  G  R G  + +E L         +   L  +
Sbjct: 168 IAVLIEVSIPGG--RTGCRTEEEVLAIAERIAQSRHLHLVGV 207


>gi|327393933|dbj|BAK11355.1| hypothetical protein PAJ_1275 [Pantoea ananatis AJ13355]
          Length = 388

 Score = 42.0 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----LIPVISSVPQLTFYSK-L 115
           V+++ E          + +    GI P +   I         +  ++ S+ Q    S   
Sbjct: 75  VSTLAEAEAFVAAGF-SNVLYAVGIAPAKLPRIAALRCSGKQVHVLLDSMAQAQAISDYA 133

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADD---PS 171
           +   V+    +++D   +R G+  + E L       ++    +  +++H   +     P 
Sbjct: 134 LQHQVTFSVFIEIDCDGHRGGIRPEDETLAEIAGHLHQHGMVVEGVMTHAGESYHCRTPQ 193

Query: 172 SHVNSVQLERFRTLISHYKGIEA 194
               + Q E  + +I+  + I A
Sbjct: 194 DIQRAAQQEC-QAVITAAQHIRA 215


>gi|256269384|gb|EEU04682.1| Dsd1p [Saccharomyces cerevisiae JAY291]
          Length = 428

 Score = 42.0 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 82/249 (32%), Gaps = 45/249 (18%)

Query: 42  GLG---CEKIAPALYNAGVQDFFVTSVEEGVKL-----RLYT--PQARIFVLYGIHPGQE 91
           G G    ++   A+         V++++E  +L     R  +       + L    P   
Sbjct: 70  GHGLPLAKRTTRAIL--------VSTLKEAEELLNYQDRQCSDYIDDITYSLPCCVPEFI 121

Query: 92  KIIFD-----TNLIPVISSVPQLTFYSKLM--SCGVSHPYALQVDTGFNRLGLSLQ--EA 142
            ++ +      N    + ++  L         + G      ++VD G  R GL+    E 
Sbjct: 122 PLLSNLSRRVNNFQVFVDNIEHLENLKNFGRPASGKKWSVFIKVDMGTKRAGLAFDSPEF 181

Query: 143 LDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS 199
           L           K++ +     +H   +   S+ +N  Q      L+   K +     +S
Sbjct: 182 LSLLKKLTSSEIKEVIEPYGFYAHAGHSYS-STSINDTQ----NLLMEEVKAV-----NS 231

Query: 200 SG-ILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELVS 255
           +  +L   +  F  ++  +S+ G T     +   +    V     +++   +   G    
Sbjct: 232 AAKVLCSVDPQFDPSKLTLSV-GATPTSNSLKLDNKSTLVKFVTTQLVSTLEIHCGNYCM 290

Query: 256 YGGQKKLTR 264
           Y  Q+  T 
Sbjct: 291 YDLQQVATG 299


>gi|55853671|gb|AAV67809.1| siderophore synthesis decarboxylase [Ralstonia solanacearum]
          Length = 413

 Score = 42.0 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 58/188 (30%), Gaps = 32/188 (17%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           DL  L+     ++A L         +K N+       +  A  +  V  + V S+ E V+
Sbjct: 23  DLDHLRERAGRLSAMLPPGCELFYAIKANS----DAPVL-AALDGAVAGYEVASLGEVVR 77

Query: 71  LRLYTPQARIFVLYGI--HPGQEKIIFDTN--LIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            R     ARI V  G      + +   +    LI V S +      +     G      L
Sbjct: 78  AREVGAHARI-VFGGPGKTDAELQGALERGVELIHVESELQLRRLDAVARRMGRRARVLL 136

Query: 127 QV-------DTGFNR-------------LGLSLQEALDFTHNSFNKKLGQLSLIISH-LA 165
           +V       D+   R              G+      D    +      ++  +  H L+
Sbjct: 137 RVNPNPLSADSAGKRPQGTLTMGGQPTQFGIEEDAVPDLIRLARGLAGVEVVGLHLHALS 196

Query: 166 CADDPSSH 173
              D  SH
Sbjct: 197 NNLDADSH 204


>gi|254363058|ref|ZP_04979117.1| hypothetical protein MHA_2645 [Mannheimia haemolytica PHL213]
 gi|153094723|gb|EDN75513.1| hypothetical protein MHA_2645 [Mannheimia haemolytica PHL213]
          Length = 225

 Score = 41.6 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 20/191 (10%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDT-NLIP 101
            +   A   AG + F    V+E V+   +         + I P Q    K++    + I 
Sbjct: 37  VEAIQAAIEAGQRAFGENYVQEAVEKIEFFANRPELEWHFIGPLQSNKTKLVAAYFDWIQ 96

Query: 102 VISSVPQLTFYSK---LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
            +  +      ++        ++    + +    ++ G+   E L            +L 
Sbjct: 97  TVDRLKIAERLNEQRPADKAPLNVLIQINISDEASKSGIEPDEMLPLAQAISQLPNLKLR 156

Query: 159 LIISHLACADDPS---SHVNSVQLERFRTLISHYKGIEA-SLASS----SGILLGPNYHF 210
            +++      +P         +QL  F  L + +  I+  S+  S    + I  G     
Sbjct: 157 GLMAIPKPESEPEQQKVAFRKMQL-LFNRLQTEFDDIDTLSMGMSDDMQAAIECGST--- 212

Query: 211 QLTRPGISLYG 221
            + R G +++G
Sbjct: 213 -MVRIGTAIFG 222


>gi|84386137|ref|ZP_00989166.1| hypothetical protein V12B01_18126 [Vibrio splendidus 12B01]
 gi|84378907|gb|EAP95761.1| hypothetical protein V12B01_18126 [Vibrio splendidus 12B01]
          Length = 424

 Score = 41.6 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 106/358 (29%), Gaps = 49/358 (13%)

Query: 9   LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPAL----YNAGVQDFFV 62
             I  +AL NN + M + + +   + +          G   + PA        G     V
Sbjct: 50  AIIKQSALTNNLNWMQSFADHHQVKLSP--------HGKTSMTPAFFRQQLENGAWGITV 101

Query: 63  TSVEEGVKLRLYTPQARIF---VLYGIHPGQEKII---FDTNLIPVI-SSVPQLTFYSKL 115
            +  +     +   +  I    ++   +    + +   FD +    + SSV         
Sbjct: 102 ATPAQAEVAAMAGAKRIIMANQLVGKTNMAIIEQLINEFDVDFYCCVDSSVNMQQLNQYF 161

Query: 116 MSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI-----ISHLACADD 169
            +   +    ++      R G  S QE L+      +     L+ I     + H   A+ 
Sbjct: 162 ANTKQTLKVLIEFGVPGGRCGCRSPQEVLELAQTIQDTPALSLAGIEVYEGVIHGDNAEQ 221

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
                 +  L    +L S        + + +G          L      L          
Sbjct: 222 DIRTFLNQALTSVESLASDGLIAGQPIITGAGSAWYDVVAECLANLTDYLAIIRPGCYAI 281

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYG---------GQKKLTRDSLIAVAAIGYADGYP 280
           H     + A+++++   +   G     G             ++R     +  +G      
Sbjct: 282 HDTGIYLDAQSKVLQRAQVNQGYACELGGDLESALEVWAYVISRPEPTKLV-VG------ 334

Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT---MDMTMFDITDS-LSIEVGDYI 334
             L   D      + +  +G+  G  + + G  +   MD   F  TD    IEVGD I
Sbjct: 335 --LGKRDVAFDAGLPIAERGYRNGEAISVKGLTSTAVMDQHTFVETDGSSEIEVGDMI 390


>gi|222087145|ref|YP_002545680.1| ornithine decarboxylase protein [Agrobacterium radiobacter K84]
 gi|221724593|gb|ACM27749.1| ornithine decarboxylase protein [Agrobacterium radiobacter K84]
          Length = 377

 Score = 41.6 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 11/123 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+ +      ++     VK N A      ++   L + G       V  +
Sbjct: 20  LVVDLDVVRDNFRAFRHAMPDSAIYYAVKANPA-----PEVLRLLASLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  + L      A           +  +     L   + +V       K+          
Sbjct: 75  E--MAL-DAGATAARISFGNTIKKERDVARAHALGISLFAVDSHEEVEKISRAAPGARVF 131

Query: 126 LQV 128
            +V
Sbjct: 132 CRV 134


>gi|120612870|ref|YP_972548.1| putative threonine aldolase [Acidovorax citrulli AAC00-1]
 gi|120591334|gb|ABM34774.1| putative threonine aldolase [Acidovorax citrulli AAC00-1]
          Length = 392

 Score = 41.6 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 33/183 (18%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
             +DL A++ N   M   +         +A+             C ++A  L  AG    
Sbjct: 27  AVVDLDAMERNIQRMAEFARKHQVRWRPHAKM----------HKCAELALRLQQAGAGGA 76

Query: 61  FVTSVEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDT---------NLIPVISSVPQLT 110
            V  V E   L        I++    I P +   +             L   + S+  + 
Sbjct: 77  CVQKVSEAEALAAGGVT-DIYISNEVIAPAKLLRVARLARQLAGMGGRLAIAVDSLEGIG 135

Query: 111 FYSKLMS---CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLAC 166
             ++ M            +++D G  R G+     A+            + + + ++   
Sbjct: 136 RLAEAMEGAGADAGIDVFVEIDVGQGRCGVPPGGAAVPLAQAVAGHARLRFAGLHAYHGQ 195

Query: 167 ADD 169
           A  
Sbjct: 196 AQH 198


>gi|302188653|ref|ZP_07265326.1| alanine racemase, N-terminal [Pseudomonas syringae pv. syringae
           642]
          Length = 378

 Score = 41.6 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 80/265 (30%), Gaps = 49/265 (18%)

Query: 12  DLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           D++ +++N   M                 ++   V+              A   AG    
Sbjct: 16  DVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVI-------------QAQIAAGASGV 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN--------LIPVISSVPQLTFY 112
            V++++E            +F    I PG+ +              L   +++   +  +
Sbjct: 63  TVSTLKEAEHCFAEGID-DVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIVVF 121

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPS 171
            +           +++D   +R GL++ + +L     +      QL  +++H   + D  
Sbjct: 122 GQAHDERFD--VWIEIDCDGHRSGLTVDDPSLIEVARTLVDGGMQLRGVMTHAGSSYDLD 179

Query: 172 SHVNSVQLERFRTLI----------SHYKGIEASLASSSGILLGPNYHFQL-TRPGISLY 220
           +      L      +          +     + S+ S+   L   + H     R G+ ++
Sbjct: 180 TPAALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTALSAQSLHGVTEVRAGVYVF 239

Query: 221 --GGTDKINKSHPMQTVVTAEARII 243
                  I      +  ++    +I
Sbjct: 240 FDLVMHNIGVCRADELALSVLTTVI 264


>gi|310766479|gb|ADP11429.1| UPF0001 protein yggS [Erwinia sp. Ejp617]
          Length = 266

 Score = 41.6 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 41/237 (17%)

Query: 16  LKNNWHSMNALSGNAR-----------TAAVVK---DNAYGLGCEKIAPALYNAGVQDFF 61
           +K+N   +      A              AV K    +A     E+       AG   F 
Sbjct: 33  IKHNLQQVRQRISAAAAKCGRASQEITLLAVSKTKPASA----IEE----AVAAGQCCFG 84

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDT-NLIPVISSVPQLTFYSKLMS 117
              V+EGV  ++        V + I P Q    +++ +  +    I  +      S+   
Sbjct: 85  ENYVQEGVD-KIQLLANPALVWHFIGPLQSNKSRLVAENFDWCHTIDRLRIAERLSQQRP 143

Query: 118 CG---VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                ++    + +    ++ G+ L E              +L  +++  A  D   S +
Sbjct: 144 DALAPLNVLIQINISAEQSKSGIMLAELPALAQQIAALPRLKLRGLMAIPAPQDGYDSQL 203

Query: 175 NSVQL--ERFRTLISHYKGIEA-SLASS----SGILLGPNYHFQLTRPGISLYGGTD 224
              QL    F+ L   Y G++  SL  S    + I  G      + R G +++G  D
Sbjct: 204 AVCQLMAAAFKQLQQQYPGVDTLSLGMSDDMDAAIAAGST----MVRIGTAIFGARD 256


>gi|307719387|ref|YP_003874919.1| pyridoxal 5'-phosphate-dependent enzyme [Spirochaeta thermophila
           DSM 6192]
 gi|306533112|gb|ADN02646.1| predicted pyridoxal 5'-phosphate-dependent enzyme [Spirochaeta
           thermophila DSM 6192]
          Length = 230

 Score = 41.6 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 29/160 (18%)

Query: 25  ALSGNARTAAVVK-------DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT-P 76
                 R  AV K        +AY             AG++ F    ++E    R    P
Sbjct: 24  RRPEEVRVMAVTKLHGPEAIADAY------------RAGIRLFGENRLQEAASKREAFPP 71

Query: 77  QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC----GVSHPYALQVDTG- 131
            A + ++  +   + +   +  L   I SV ++     L       G   P  ++V+   
Sbjct: 72  DAELHLIGHLQRNKARKAVE--LFSCIHSVDRIPLIEALEKAWGDRGGRLPVLVEVNISG 129

Query: 132 -FNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADD 169
              + G   +E +             +    ++     DD
Sbjct: 130 EETKYGFRTEEEVGQALERLAASPALEPRGFMTMAPYTDD 169


>gi|225679681|gb|EEH17965.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 496

 Score = 41.6 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 23/130 (17%)

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-------LIPVISSVPQLTF 111
              V+++ E  +L+ Y        L  + P   K +           +  ++ +   + F
Sbjct: 82  RLVVSTLAEAEQLKPY--------LEELQPSCFKRLAVLGASLGKGSISVLVDTPEIIPF 133

Query: 112 YSKLMS-CGVSHPYALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQ-----LSLIISH 163
            +K       +    +++DTG+ R G+     E  D        +  +     L    SH
Sbjct: 134 LAKYRELTSDTLGVFIKLDTGYQRAGVCPDSYEFRDLVAVIHAAEHDETSSISLRGFYSH 193

Query: 164 LACADDPSSH 173
              + + SS 
Sbjct: 194 FGNSYNSSSE 203


>gi|209550966|ref|YP_002282883.1| Orn/DAP/Arg decarboxylase 2 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536722|gb|ACI56657.1| Orn/DAP/Arg decarboxylase 2 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 377

 Score = 41.6 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 28/200 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  + +N+H+      ++     VK N A      ++   L   G       V  +
Sbjct: 20  LVVDLDVISDNFHAFRHAMPDSAIYYAVKANPA-----PEVLKLLAGLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++       A           +  +     L   + +V       K+          
Sbjct: 75  EMALE---AGATAARISFGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVF 131

Query: 126 LQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            +V T         +R  G   Q A+D    +    L            +    S +   
Sbjct: 132 CRVLTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGLL-------SYGVSFHVGSQMTK- 183

Query: 178 QLERFRTLISHYKGIEASLA 197
            ++ + + ++  K +  SLA
Sbjct: 184 -VDAWDSALADAKRVFVSLA 202


>gi|323333617|gb|EGA75010.1| Dsd1p [Saccharomyces cerevisiae AWRI796]
          Length = 428

 Score = 41.6 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 82/250 (32%), Gaps = 45/250 (18%)

Query: 42  GLG---CEKIAPALYNAGVQDFFVTSVEEGVKL-----RLYT--PQARIFVLYGIHPGQE 91
           G G    ++   A+         V++++E  +L     R  +       + L    P   
Sbjct: 70  GHGLPLAKRTTRAIL--------VSTLKEAEELLNYQDRQCSDYIDDITYSLPCCVPEFI 121

Query: 92  KIIFD-----TNLIPVISSVPQLTFYSKLM--SCGVSHPYALQVDTGFNRLGLSLQ--EA 142
            ++ +      N    + ++  L         + G      ++VD G  R GL+    E 
Sbjct: 122 PLLSNLSRRVNNFQVFVDNIEHLENLKNFGRPASGKKWSVFIKVDMGTKRAGLAFDSPEF 181

Query: 143 LDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS 199
           L           K++ +     +H   +   S+ +N  Q      L+   K +     +S
Sbjct: 182 LSLLKKLTSSEIKEVIEPYGFYAHAGHSYS-STSINDTQ----NLLMEEVKAV-----NS 231

Query: 200 SG-ILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELVS 255
           +  +L   +  F  ++  +S+ G T     +   +    V     +++   +   G    
Sbjct: 232 AAKVLCSVDPQFDPSKLTLSV-GATPTSNSLKLDNKSTLVKFVTTQLVSTLEIHCGNYYM 290

Query: 256 YGGQKKLTRD 265
           Y  Q+  T  
Sbjct: 291 YDLQQVATGC 300


>gi|330838695|ref|YP_004413275.1| protein of unknown function UPF0001 [Selenomonas sputigena ATCC
           35185]
 gi|329746459|gb|AEB99815.1| protein of unknown function UPF0001 [Selenomonas sputigena ATCC
           35185]
          Length = 230

 Score = 41.6 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 61/219 (27%), Gaps = 28/219 (12%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----L-RLYT 75
            ++       R  AV K      G  ++       GV D     ++E  +    L R   
Sbjct: 20  RTIADAKEPVRLVAVTK----NHGVAEM-REAIAHGVTDIGENRIQEAREKFETLERTAV 74

Query: 76  PQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTG-- 131
                 ++  +   + K      +LI  + ++       K     G      +QV+    
Sbjct: 75  WH----LIGHLQKNKAKYAVKLFDLIHSVDTLELAEALDKEAGKSGKRQDVLVQVNLAKE 130

Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191
            ++ G+  ++              +L  ++      +            R   +    K 
Sbjct: 131 ASKSGIYEEDLQPLLEAVDALPHLRLCGLMC--IAPNYDEVEETRPLFRRMYEIFQRTKE 188

Query: 192 IEASLAS----SSGILLGPNYHF----QLTRPGISLYGG 222
                A+    S G+             + R G +++G 
Sbjct: 189 FPWKTANINYLSMGMTHDYRIAVEEGANIVRVGTAIFGP 227


>gi|40217453|emb|CAE46386.1| conserved hypothetical protein [uncultured archaeon]
 gi|268323836|emb|CBH37424.1| conserved hypothetical protein containing N-terminal domain of
           alanine racemase [uncultured archaeon]
          Length = 224

 Score = 41.6 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 21/188 (11%)

Query: 51  ALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV----LYGIHPGQEKIIFDT-NLIPVISS 105
           A   AG+       ++E    R +    R  V    +  +   + K   D  +LI  I S
Sbjct: 38  AAIEAGITIVGENYIQEAE--RAFKVIGR-MVKWHFIGHLQRNKVKKAVDLFDLIETIDS 94

Query: 106 VPQLTFYSKLM-SCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                  +++    G   P  ++V++G      G+  ++  +           ++  +++
Sbjct: 95  FSIAEEINRVSSKIGKIMPILIEVNSGREPRKFGVLPEDVDELVVKISALASVKIEGLMT 154

Query: 163 HLACADDPSSH--VNSVQLERFRTLISHYKGIEA------SLASSSGILLGPNYHFQLTR 214
                +D            E F  +     GI A      S+  S   ++       + R
Sbjct: 155 MGPYEEDIEKSRLYFRETKEIFEQI--KKSGIPAVDMRYLSMGMSDSYIIAIEEGANIVR 212

Query: 215 PGISLYGG 222
            GI ++G 
Sbjct: 213 VGIGIFGP 220


>gi|300865596|ref|ZP_07110373.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336411|emb|CBN55523.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 232

 Score = 41.6 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 42/240 (17%)

Query: 18  NNWHSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
            N      L  + R  AV   V              + Y AGV+DF  + ++E    +  
Sbjct: 9   ANIRQ--QLPPSVRLIAVSKQV--------SVDAMRSAYAAGVRDFGESRIQEAAD-KQA 57

Query: 75  ----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY------ 124
                P     ++  +   +            I SV  L    +L        Y      
Sbjct: 58  QMQDLPDITWHLIGHLQANKAAKAVQQ--FQWIHSVDSLKLAQRLDRLAEELAYQPQACL 115

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184
            +++    ++ G S+ E L         +  ++  +++      D      +  +  F T
Sbjct: 116 QVKILPDRDKYGWSIPELLADLPEINQCRSLRIKGLMTIPPLGLDE-----AQTISLFNT 170

Query: 185 LISHYKGIE-----------ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
                + I             S+  S    L       + R G +L+G       + P +
Sbjct: 171 ARELAEKIRQQNWSHIEMQQLSMGMSGDYHLAIQAGATMVRVGRTLFGERGTSAIADPNK 230


>gi|296123157|ref|YP_003630935.1| alanine racemase domain protein [Planctomyces limnophilus DSM 3776]
 gi|296015497|gb|ADG68736.1| alanine racemase domain protein [Planctomyces limnophilus DSM 3776]
          Length = 374

 Score = 41.6 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 59/208 (28%), Gaps = 42/208 (20%)

Query: 9   LKIDLTALKNNWHSM-------NALSGNARTAAVVKDNAYGLGC-----EKIAPALYNAG 56
           L IDL A++ N   M         L  + +T                   ++A  +    
Sbjct: 20  LIIDLDAVRENLDHMLAVSGGPERLRPHCKT----------HKMLELSKLEVARGIRRHK 69

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-------LIPVISSVPQL 109
              F      E   L        + + Y +     +   +         L  +      L
Sbjct: 70  AATFA-----EAEMLARAG-AIDVLLAYPLVGPNLRRAAEFRHRFPGTKLTVLADDARTL 123

Query: 110 TFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIIS---H 163
              S++ S  G++    L ++ G NR G+  +  E+L              + +     H
Sbjct: 124 DAMSEMTSTAGITLDVLLDLNVGMNRTGVDPRLPESLSLYQKLIALPGLNAAGLHVYDGH 183

Query: 164 LACADDPSSHVNSVQ-LERFRTLISHYK 190
           L   +      +  Q  E  + L    +
Sbjct: 184 LHQTNIEERAASVRQVWEMVQQLRERLR 211


>gi|255305459|ref|ZP_05349631.1| putative amino acid racemase [Clostridium difficile ATCC 43255]
          Length = 354

 Score = 41.6 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 122/361 (33%), Gaps = 58/361 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFV 62
           + RL+ID+  LK+N   ++ +    N + + V K         ++I   + + G+     
Sbjct: 2   YPRLEIDIEKLKHNAKLISQMCHERNIKISFVTKSFC----AQKEIVEEICSEGIDHIAD 57

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
           + ++   KL+         ++      + + + +   I   S +  +   ++L  S  + 
Sbjct: 58  SRIQNLKKLQD--INLPKILIRIPMLSELEEVINYCDISFNSELGTIKKLNELCESKNII 115

Query: 122 HPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQ 178
           H   L  D G  R G    ++  +        K  ++  I ++L C  A  PS       
Sbjct: 116 HKIVLMFDLGDLREGYFYEEDFFNNVREIVRLKNIKIIGIATNLTCYGAIIPSRENIGRL 175

Query: 179 LERFRTLISHYKGIEASLA---SSSGILL-----GPNYHFQLTRPGISLYGGTDKINKSH 230
           +   + +   + GI   +    +SS I L      P     L      L G      ++ 
Sbjct: 176 VSIAKKMEEKF-GINLEIVSGGNSSSIHLLINNNMPEGITNLRIGESILLGRETAYGENI 234

Query: 231 P--MQTVVTAEARIILIRK---ALAGELV--------SYGGQKKLTRDSLIAVAAIGYAD 277
               Q       +++  ++      GE+          Y  +  L R    A+ AIG   
Sbjct: 235 NGTYQDAFKLICQVVECKEKPSVPIGEIGVDAFRNKPVYEDKGILKR----AIIAIG--- 287

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI 336
                    D      + +     I G         + D  + D++++    ++GD ++ 
Sbjct: 288 -------KQDINIDSLIPIDTDIKILG--------ASSDHMILDVSNTKYDYKLGDNLEF 332

Query: 337 F 337
            
Sbjct: 333 L 333


>gi|254515818|ref|ZP_05127878.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
           NOR5-3]
 gi|219675540|gb|EED31906.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
           NOR5-3]
          Length = 230

 Score = 41.6 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 62/211 (29%), Gaps = 28/211 (13%)

Query: 27  SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV----KLRLYTPQARIFV 82
             + R  AV K         +      NAG+ DF    ++E +                 
Sbjct: 28  PQSVRVMAVSKTQ-----SAEAVRTAANAGLTDFGENYLQEALDKIAACEDLGLTWHFI- 81

Query: 83  LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC------GVSHPYALQVDTGFNRLG 136
              I   + + I  +     + SV +     +L          ++    + V    ++ G
Sbjct: 82  -GPIQSNKTRPIATSFHW--VHSVDREKILRRLSEQRDANLPALNICIQVNVSREASKSG 138

Query: 137 LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-----LERFRTLISHYKG 191
           ++ ++       +      +L  ++   A            Q        F    S Y  
Sbjct: 139 VAPEDLPPLLALTAGLPNLELRGLM---AIPAASDDFATQKQACDLMATLFHEAQSQYPS 195

Query: 192 IEA-SLASSSGILLGPNYHFQLTRPGISLYG 221
           ++  S+  S+ +         + R G +++G
Sbjct: 196 LDTLSMGMSADLEAAVAAGSNMLRIGTAIFG 226


>gi|326431293|gb|EGD76863.1| hypothetical protein PTSG_08211 [Salpingoeca sp. ATCC 50818]
          Length = 344

 Score = 41.6 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 97  TNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
            +   ++ S   L      +    S    P  +++D G++R G+   E +     S  + 
Sbjct: 79  NDFQVLVDSPELLEKLHTALRTSESRCPLPVWIKIDCGYHRAGVQDPEDVLALAQSIKEP 138

Query: 154 LGQLSLIISHLACADDPSSHVNSVQLE 180
           L  L  + +H   +          +L 
Sbjct: 139 LTTLRGVYTHAGMSYGCRHPDQIQELA 165


>gi|311743393|ref|ZP_07717200.1| amino acid racemase [Aeromicrobium marinum DSM 15272]
 gi|311313461|gb|EFQ83371.1| amino acid racemase [Aeromicrobium marinum DSM 15272]
          Length = 360

 Score = 41.6 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 127/396 (32%), Gaps = 82/396 (20%)

Query: 8   RLKIDLTALKNNWHSM-NALSGN-------ARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           RL+IDL  +++N  ++   L+          +  AV        G   +  A+   G + 
Sbjct: 6   RLEIDLDDVEHNTRALVGRLAPRGISVQGVTK--AV-------CGNPSVGAAMMRGGARG 56

Query: 60  FFVTSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              + +E    LR   P+A    V   +    ++++ +      +++ P +       + 
Sbjct: 57  LADSRIENLAVLRRGDPRAPRTLVRSPMLSQVDRVVVEAG--TSLNTEPVVLAALSASAA 114

Query: 119 GV--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHV 174
           G    H   L V+ G  R G+++ + +D   +        L  + ++LAC     P    
Sbjct: 115 GHRDRHAVVLMVELGDLREGVAVGDVVDLARHVGALGGLALVGLGTNLACQSGVVPDQRS 174

Query: 175 NSVQLERFRTLISHYKGI---EASLASSSGILLGPNYHF----QLTRPGISLYGGTDKIN 227
               L      +     +     S  +S+ +               R G S+  GTD + 
Sbjct: 175 MDE-LSGLVDAVERSSSLVLPVVSGGNSANLGWAMTTRSVGRINQLRLGESILLGTDPLR 233

Query: 228 KSHPMQT---VVTAEARIILIRKALAGELVSYGGQKKLTRDS--------------LIAV 270
           ++               +I ++   A            T  S                A+
Sbjct: 234 RASIPGLRLDACVLVGEVIEVKTKPA-------RAWGATAQSAFERRPRRRGRGTVRQAL 286

Query: 271 AAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV 330
            A+G         +  D    P                ILG ++ D  + D+ D  +  V
Sbjct: 287 VAVG------RQDTDPDGLTVPDGMT------------ILG-MSSDHLVLDVGDHATA-V 326

Query: 331 GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366
           GD ++ FG D       L + T+ Y  +  +  R  
Sbjct: 327 GDELR-FGVDYSAL---LRASTSPY--VTTVEHRRP 356


>gi|254467051|ref|ZP_05080462.1| ornithine decarboxylase, putative [Rhodobacterales bacterium Y4I]
 gi|206687959|gb|EDZ48441.1| ornithine decarboxylase, putative [Rhodobacterales bacterium Y4I]
          Length = 383

 Score = 41.6 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 25/133 (18%)

Query: 36  VKDN---AYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
           VK N   A       +   L  AG+  F V S  E   +R  +P A   V++  +P + +
Sbjct: 51  VKANPHPA-------VLSNLVAAGITAFDVASPAEMEAVRAASPDA---VMHYNNPMRSE 100

Query: 93  IIFDTNLIPVIS--SVPQLTFYSKLMSCGVSHPYALQV---------DTGFNRLGLSLQE 141
               T +   ++  SV +L+   KL +   S   A++          D G ++ G + +E
Sbjct: 101 AEIATGIEHGVASWSVDELSELEKLDAVPRSCEVAVRFALPVAGAAYDFG-SKFGAAPEE 159

Query: 142 ALDFTHNSFNKKL 154
           A++       K  
Sbjct: 160 AVELLKQVAAKGW 172


>gi|149278670|ref|ZP_01884806.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Pedobacter
           sp. BAL39]
 gi|149230665|gb|EDM36048.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Pedobacter
           sp. BAL39]
          Length = 371

 Score = 41.6 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 14/130 (10%)

Query: 43  LGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP-----GQEKIIFDT 97
               ++     + G+      ++ E              VL    P     G+   + + 
Sbjct: 51  HKMAEVLRLFLDRGIAKIKCATIAEAELAAATGITD---VLLAYQPVGAKVGRLLALIEK 107

Query: 98  ----NLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFN 151
               +   ++  +        + + CG +    + ++TG NR G     +  DF      
Sbjct: 108 FPETHFSCLVDHLASAEHIGEQAIQCGKTLTVYIDLNTGMNRTGYPYRADLPDFYRAIAA 167

Query: 152 KKLGQLSLII 161
                   + 
Sbjct: 168 IPGLVPVGLH 177


>gi|126738650|ref|ZP_01754355.1| hypothetical protein RSK20926_09297 [Roseobacter sp. SK209-2-6]
 gi|126720449|gb|EBA17155.1| hypothetical protein RSK20926_09297 [Roseobacter sp. SK209-2-6]
          Length = 388

 Score = 41.6 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 35/173 (20%)

Query: 9   LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAP-----ALYNAGVQDFFV 62
           L +D   L +N       L        V K           AP     A+     +   V
Sbjct: 29  LILDKGRLMHNLALARERLHPGVEVRVVAKS--------LAAPPLLDLAMEQLDAR--GV 78

Query: 63  TS-----VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN---------LIPVISSVPQ 108
            S     +EE + LR   P A   +   +       I D N         LI  +    Q
Sbjct: 79  MSFSAPMLEELLHLR---PNAEHLLGKPLPAPAAARILDRNVRARDQVIWLIDTLERAQQ 135

Query: 109 LTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
               ++    G+  P A+++D G +R G + +            K  +L   +
Sbjct: 136 YDALAR--ERGLVLPIAVELDVGLHRGGFTTKTLPPAIEAISTLKGLRLQGAM 186


>gi|319956050|ref|YP_004167313.1| diaminopimelate decarboxylase [Nitratifractor salsuginis DSM 16511]
 gi|319418454|gb|ADV45564.1| diaminopimelate decarboxylase [Nitratifractor salsuginis DSM 16511]
          Length = 407

 Score = 41.6 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 55/183 (30%), Gaps = 41/183 (22%)

Query: 12  DLTALKNNWHSMN-ALSGNARTAA-VVKDNA-------YG-LGCEKIAPALYNAGVQDFF 61
           D   ++ N+  +  A +G+    A  VK N+       +G LG           G     
Sbjct: 20  DFDQMRENYRRLKEAFAGSKSLIAYAVKANSNLSVISLFGKLGA----------GADCV- 68

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD----------------TNLIPVISS 105
             S+ E ++ R    +    +  G+    ++I                     +  V   
Sbjct: 69  --SLGEILRARTAGIEPYRIIFSGVGKRDDEIEAALKEGILMINLESEAEMHRVEEVAQR 126

Query: 106 VPQLTFYSKLMSCGVSHPYALQVDTGF--NRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
           + Q    S  ++  V       + TG   N+ G+ +  A      + N        I  H
Sbjct: 127 LGQEARISIRVNPNVDPQTHPYISTGLHENKFGVEIDRAKRMYIYAKNSDWLDPVGIHFH 186

Query: 164 LAC 166
           +  
Sbjct: 187 IGS 189


>gi|83747080|ref|ZP_00944124.1| Ssd [Ralstonia solanacearum UW551]
 gi|207739670|ref|YP_002258063.1| staphyloferrin b siderophore synthesis decarboxylase protein
           [Ralstonia solanacearum IPO1609]
 gi|83726210|gb|EAP73344.1| Ssd [Ralstonia solanacearum UW551]
 gi|206593052|emb|CAQ59958.1| staphyloferrin b siderophore synthesis decarboxylase protein
           [Ralstonia solanacearum IPO1609]
          Length = 413

 Score = 41.6 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 32/188 (17%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           DL  L+     ++A L         +K N+       +  A  +  V  + V S+ E V+
Sbjct: 23  DLDHLRERAGRLSAMLPPGCELFYAIKANS----DAPVL-AALDGAVAGYEVASLGEVVR 77

Query: 71  LRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPV-ISSVPQLTFYSKLM-SCGVSHPYAL 126
            R     ARI V  G      + +   +  +  + + S  QL     +    G      L
Sbjct: 78  AREVGAHARI-VFGGPGKTDAELQGALERGVELIHVESELQLRRLDAVACRMGRRARVLL 136

Query: 127 QV-------DTGFNR-------------LGLSLQEALDFTHNSFNKKLGQLSLIISH-LA 165
           +V       D+   R              G+      D    +      ++  +  H L+
Sbjct: 137 RVNPNPLSADSAGKRPQGTLTMGGQPTQFGIEEDAVPDLIRLARGLPGVEVVGLHLHALS 196

Query: 166 CADDPSSH 173
              D  SH
Sbjct: 197 NNLDADSH 204


>gi|307129851|ref|YP_003881867.1| metal-activated pyridoxal enzyme [Dickeya dadantii 3937]
 gi|306527380|gb|ADM97310.1| metal-activated pyridoxal enzyme [Dickeya dadantii 3937]
          Length = 381

 Score = 41.6 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 14/129 (10%)

Query: 45  CEKIAPALYNAG---VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT---- 97
              +A  L   G        V+++ E         +  I    GI P +   + D     
Sbjct: 49  SVDVARRLLTNGTGPAT---VSTLREAEVFFESGIR-DILYAVGIAPQKLARVIDLIKAG 104

Query: 98  -NLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKL 154
            +L  ++ S+ Q         + GVS P  L+VD+  +R GL     +L       +   
Sbjct: 105 CDLTVLLDSMEQAQAVVDASRASGVSIPALLEVDSDGHRSGLPPASPSLIAIGRVLHDGG 164

Query: 155 GQLSLIISH 163
           G L  +++H
Sbjct: 165 GLLRGVLTH 173


>gi|254472228|ref|ZP_05085628.1| conserved hypothetical protein TIGR00044 [Pseudovibrio sp. JE062]
 gi|211958511|gb|EEA93711.1| conserved hypothetical protein TIGR00044 [Pseudovibrio sp. JE062]
          Length = 225

 Score = 41.6 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 36/174 (20%)

Query: 12  DLTALKNNWHSMNALSGNAR-----------TAAVVK---DNAYGLGCEKIAPALYNAGV 57
           D  AL+     +    G A              AV K    +A     + +      AG 
Sbjct: 3   DAAALR--LKEVKENIGKAEKDAERPNGSVTLIAVSKTFEASA----IKPV----LEAGQ 52

Query: 58  QDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
           + F    V+E +     LR       + ++  +   + K    T    VI +V +     
Sbjct: 53  RVFGENRVQEAMGKWPGLREEFEGVELHLIGPLQSNKAKEAIQT--FDVIHTVDRDKIAK 110

Query: 114 KLMS----CGVSHPYALQVDTGFN--RLGLSLQEALDFTHNSFNKKLGQLSLII 161
            L +     G +    +QV+TG    + G+  +EA  F     ++   ++  ++
Sbjct: 111 ALKAEMDKQGKTPKLFIQVNTGEEEQKAGIPPKEADAFIAKCRDEYGLEIEGLM 164


>gi|163740918|ref|ZP_02148311.1| hypothetical protein RG210_13796 [Phaeobacter gallaeciensis 2.10]
 gi|161385909|gb|EDQ10285.1| hypothetical protein RG210_13796 [Phaeobacter gallaeciensis 2.10]
          Length = 382

 Score = 41.6 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 33/181 (18%)

Query: 20  WHSMNALSGNARTAAV--------VKDNAYGLGCEKIAPALYNAG---VQDFFVTSVEEG 68
             ++  L+       V        VK         +I+  L   G        V+++ E 
Sbjct: 24  MRNIQRLAKQVDGLGVSLRPHLKTVK-------STEISRRLLTDGSGPAT---VSTLIEA 73

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQ-LTFYSKLMSCGVSH 122
                   +  I+ + GI P +   +        +L  V+ SV Q           G++ 
Sbjct: 74  EVFAEAGVKDIIYAV-GITPQKLDRVAAIRSKGCDLAVVLDSVAQAHAVADASARLGLAI 132

Query: 123 PYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADD----PSSHVNSV 177
           P  +++D   +R G+   +  L       +    +L  +++H   + +        + + 
Sbjct: 133 PALIELDCDGHRSGVVPGDPVLLEIGRVLHDGASELRGVLTHAGESYEIQGRHGHEIFAK 192

Query: 178 Q 178
           Q
Sbjct: 193 Q 193


>gi|87125612|ref|ZP_01081457.1| hypothetical protein RS9917_02526 [Synechococcus sp. RS9917]
 gi|86166912|gb|EAQ68174.1| hypothetical protein RS9917_02526 [Synechococcus sp. RS9917]
          Length = 221

 Score = 41.2 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 63/220 (28%), Gaps = 40/220 (18%)

Query: 22  SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF 81
            M AL  +AR  AV K    G     I   L   G   F  + V+E   LR     A + 
Sbjct: 13  VMAALPPSARLLAVSK----GHPAAAI-RDLAALGQVAFGESRVQEA--LRKQEELADLT 65

Query: 82  VLYGIHPGQEKI------IFDTNLIPVISSVPQLTFYSKLMS---CGVSHPYALQVDTGF 132
            L     G+ +       +     I  + S+      S++     C       +++    
Sbjct: 66  QLQWHFIGRLQANKVRQVLRAFGTIHSLDSLALCERVSRIAGEEGCQPRVMLQVKLRPDP 125

Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI 192
            + G   +E      +        +  +++       P        L  FR        +
Sbjct: 126 KKGGWDPEELRQVWPDLQRLPHCSIVGLMTIAPLGLAPEER-----LALFRDCRQLADDL 180

Query: 193 EASLAS-----------SSGILLGPNYHFQLTRPGISLYG 221
             S  S           S+G            R G +L+G
Sbjct: 181 GLSECSMGMSGDWAEAVSAGA--------TWVRLGSALFG 212


>gi|221632825|ref|YP_002522047.1| hypothetical protein trd_0819 [Thermomicrobium roseum DSM 5159]
 gi|221155434|gb|ACM04561.1| conserved hypothetical protein TIGR00044 [Thermomicrobium roseum
           DSM 5159]
          Length = 230

 Score = 41.2 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 28/176 (15%)

Query: 4   NEFLRLKIDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGC--EKIAPALYNAGV 57
            E+ RL+  L  ++         +G    + +  AV K      G   EK+  A Y  G+
Sbjct: 2   QEYERLREHLARVRCRIERAAERAGRDPQSVQIVAVTK------GIDREKV-QAAYELGL 54

Query: 58  QDFFVTSVEEGVKLRLYT-----PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---- 108
           + F    V+E    R +      P A + ++  +   + +      L  +I SV +    
Sbjct: 55  RLFGENRVQEAQ--RKFGENPLPPDAELHLIGYLQTNKVRHAVK--LFALIHSVDRAALI 110

Query: 109 LTFYSKLMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
              + +    G   P  +QV+      + G    EA +       K    +  +++
Sbjct: 111 EELHERAARVGRRLPILIQVNIAGEEQKHGCRPAEAAELLALGLTKPHLDVRGLMT 166


>gi|169840729|ref|ZP_02873842.1| hypothetical protein cdivTM_26506 [candidate division TM7
           single-cell isolate TM7a]
          Length = 59

 Score = 41.2 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 15/48 (31%), Gaps = 11/48 (22%)

Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
           YG           A  +IGYADG    LS             G  FI 
Sbjct: 1   YGNTYLGKAGETYATVSIGYADGVRRDLSN-----------KGYVFIN 37


>gi|16272064|ref|NP_438263.1| hypothetical protein HI0090 [Haemophilus influenzae Rd KW20]
 gi|260580606|ref|ZP_05848433.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|1723862|sp|P44506|Y090_HAEIN RecName: Full=UPF0001 protein HI_0090
 gi|1573041|gb|AAC21768.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092668|gb|EEW76604.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
          Length = 237

 Score = 41.2 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 77/238 (32%), Gaps = 43/238 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +      A           +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKT-------KPISAILSAYQAGQTAFG 54

Query: 62  VTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLM 116
              V+EGV+                +  +   + +++ +  + +  +         ++  
Sbjct: 55  ENYVQEGVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQR 114

Query: 117 ---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + +    ++ G+  +E L    +  N     L  ++   A      + 
Sbjct: 115 PTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLM---AIPAPTDNI 171

Query: 174 VNSVQLERFRTLISHYKGIEASLAS------SSGILLGPNY----HFQLTRPGISLYG 221
             + Q   FR ++  ++ ++  L +      S G+             + R G +++G
Sbjct: 172 --AEQENAFRKMLELFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFG 227


>gi|167755110|ref|ZP_02427237.1| hypothetical protein CLORAM_00614 [Clostridium ramosum DSM 1402]
 gi|237733463|ref|ZP_04563944.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705160|gb|EDS19739.1| hypothetical protein CLORAM_00614 [Clostridium ramosum DSM 1402]
 gi|229383498|gb|EEO33589.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 213

 Score = 41.2 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 32/228 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF---V-TS 64
           ++++  A+KN    + +  GNA+  A  K   Y +G E+I   L   GV+ F    V   
Sbjct: 1   MRVNEQAVKN---ILKS-VGNAKLVAATK---Y-VGIEEI-NELEKLGVKYFGENRVQAF 51

Query: 65  VE--EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122
           +E  E      Y       ++  + P + K I D   + +I S+   +   ++      H
Sbjct: 52  LEKYE-----KYHGAQEFHMIGTLQPNKVKYIIDK--VSLIHSIDSYSLIKEVEKQAKKH 104

Query: 123 ----PYALQVDTGF--NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VN 175
               P  +QV+     ++ G +++E  D            +  ++      D   +    
Sbjct: 105 DLKMPILIQVNVAKEESKHGFAVEEIEDVFDYLKECPHLIVKGLMMMAPHIDSNDTAVYF 164

Query: 176 SVQLERFRTL---ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY 220
               E F  L    S ++  E S+  S+       Y   + R G +L+
Sbjct: 165 KQTKELFDQLNCKYSEFEMTELSMGMSNDYHEALKYGATMIRVGSALF 212


>gi|323305075|gb|EGA58828.1| Dsd1p [Saccharomyces cerevisiae FostersB]
          Length = 394

 Score = 41.2 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 82/250 (32%), Gaps = 45/250 (18%)

Query: 42  GLG---CEKIAPALYNAGVQDFFVTSVEEGVKL-----RLYT--PQARIFVLYGIHPGQE 91
           G G    ++   A+         V++++E  +L     R  +       + L    P   
Sbjct: 36  GHGLPLAKRTTRAIL--------VSTLKEAEELLNYQDRQCSDYIDDITYSLPCCVPEFI 87

Query: 92  KIIFD-----TNLIPVISSVPQLTFYSKLM--SCGVSHPYALQVDTGFNRLGLSLQ--EA 142
            ++ +      N    + ++  L         + G      ++VD G  R GL+    E 
Sbjct: 88  PLLSNLSRRVNNFQVFVDNIEHLENLKNFGRPASGKKWSVFIKVDMGTKRAGLAFDSPEF 147

Query: 143 LDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS 199
           L           K++ +     +H   +   S+ +N  Q      L+   K +     +S
Sbjct: 148 LSLLKKLTSSEIKEVIEPYGFYAHAGHSYS-STSINDTQ----NLLMEEVKAV-----NS 197

Query: 200 SG-ILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELVS 255
           +  +L   +  F  ++  +S+ G T     +   +    V     +++   +   G    
Sbjct: 198 AAKVLCSVDPQFDPSKLTLSV-GATPTSNSLKLDNKSTLVKFITTQLVSTLEIHCGNYCM 256

Query: 256 YGGQKKLTRD 265
           Y  Q+  T  
Sbjct: 257 YDLQQVATGC 266


>gi|301111674|ref|XP_002904916.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262095246|gb|EEY53298.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 377

 Score = 41.2 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 99  LIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQ 156
           L+ V SS           +CG +    + VD G++R+G+   +   L            +
Sbjct: 91  LLTVDSSEGVDAAQKAAEACGCTLNLLIHVDVGYHRVGVEENDPKLLQLAQRIDKTSSLE 150

Query: 157 LSLIISHL-------ACADDPSSHVNSVQL 179
              ++SH        + AD         Q+
Sbjct: 151 FRGLLSHAGHVYRCKSVADCSEVAETERQI 180


>gi|90415261|ref|ZP_01223195.1| hypothetical protein GB2207_08096 [marine gamma proteobacterium
           HTCC2207]
 gi|90332584|gb|EAS47754.1| hypothetical protein GB2207_08096 [marine gamma proteobacterium
           HTCC2207]
          Length = 257

 Score = 41.2 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 28/192 (14%)

Query: 50  PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDTNLIPVISSV 106
               +AG+  F    ++E ++ ++   +      + I P Q    +   +      + SV
Sbjct: 70  RQAMDAGLSHFAENYLQEALE-KIAELEGENLCWHFIGPLQSNKTRNAAENFSW--VHSV 126

Query: 107 PQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
            +L    +L          ++    + +D   ++ G  +   L            +L  +
Sbjct: 127 DRLKIAQRLSDQRPESLGPLNICLQVNIDNEPSKSGFLVDALLPIALQIAKLPNLRLRGL 186

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS----------SGILLGPNYHF 210
           +     A   +++    Q   F  L    + I  SL +S          SG L       
Sbjct: 187 M-----AIPRATNSVQEQQAAFNKLAELCQQINQSLDNSEKLDTLSMGMSGDLEAAISQG 241

Query: 211 -QLTRPGISLYG 221
             + R G  ++G
Sbjct: 242 STMVRVGTDIFG 253


>gi|50593216|ref|NP_011319.2| Dsd1p [Saccharomyces cerevisiae S288c]
 gi|97537668|sp|P53095|DSD1_YEAST RecName: Full=D-serine dehydratase; AltName: Full=D-serine
           deaminase; Short=DSD
 gi|285812018|tpg|DAA07918.1| TPA: Dsd1p [Saccharomyces cerevisiae S288c]
          Length = 428

 Score = 41.2 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 82/250 (32%), Gaps = 45/250 (18%)

Query: 42  GLG---CEKIAPALYNAGVQDFFVTSVEEGVKL-----RLYT--PQARIFVLYGIHPGQE 91
           G G    ++   A+         V++++E  +L     R  +       + L    P   
Sbjct: 70  GHGLPLAKRTTRAIL--------VSTLKEAEELLNYQDRQCSDYIDDITYSLPCCVPEFI 121

Query: 92  KIIFD-----TNLIPVISSVPQLTFYSKLM--SCGVSHPYALQVDTGFNRLGLSLQ--EA 142
            ++ +      N    + ++  L         + G      ++VD G  R GL+    E 
Sbjct: 122 PLLSNLSRRVNNFQVFVDNIEHLENLKNFGRPASGKKWSVFIKVDMGTKRAGLAFDSPEF 181

Query: 143 LDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS 199
           L           K++ +     +H   +   S+ +N  Q      L+   K +     +S
Sbjct: 182 LSLLKKLTSSEIKEVIEPYGFYAHAGHSYS-STSINDTQ----NLLMEEVKAV-----NS 231

Query: 200 SG-ILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELVS 255
           +  +L   +  F  ++  +S+ G T     +   +    V     +++   +   G    
Sbjct: 232 AAKVLCSVDPQFDPSKLTLSV-GATPTSNSLKLDNKSTLVKFITTQLVSTLEIHCGNYCM 290

Query: 256 YGGQKKLTRD 265
           Y  Q+  T  
Sbjct: 291 YDLQQVATGC 300


>gi|149189534|ref|ZP_01867818.1| hypothetical protein VSAK1_00892 [Vibrio shilonii AK1]
 gi|148836691|gb|EDL53644.1| hypothetical protein VSAK1_00892 [Vibrio shilonii AK1]
          Length = 379

 Score = 41.2 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 83/275 (30%), Gaps = 36/275 (13%)

Query: 11  IDLTALKNNWHSMNALSG--NARTAAVVKDNA---YGLGCEKIAPALYNAGVQDFFVTSV 65
           ID+     N   +   +     +   + K      Y      +A  L   G         
Sbjct: 33  IDVEQFTANAKVIRQRASDLGLKLYGMTKQFGRNPY------LAQLLLELGYDGIVAVDF 86

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDTN-LIPVISSVPQLTFYS-KLMSCGV 120
           +E   L L   + +  V + + P     E+I+ +    +  + S+ +    S     CG 
Sbjct: 87  KEARALHLAGVKVQ-HVGHLVQPPTAMVEQIVAEMKPEVMTVYSLDKARQISDAACKCGR 145

Query: 121 SHPYALQVDTGFNRL------GLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
             P  ++     +RL      G  + E           K  +L  + +H  C       +
Sbjct: 146 VQPVLVKFYGDEDRLYVNQEAGFPIAELDSVLEALGQMKGIRLEGV-THFPCFLFDGEQL 204

Query: 175 NS-VQLERFRTLISHYKGI-EASLAS--SSGIL----LGPNYHFQLTRPGISLYGGTDK- 225
            +   ++    +I H+         +  S+       +          PG +L G     
Sbjct: 205 AATENVDTLHQVIEHWPEEGGPHQVNMPSATCFNTLTMIKRLGGTHGEPGHALTGTFPAN 264

Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
           I+ S P +  +   + I    +   G    YGG  
Sbjct: 265 IDGSQPEKVAMLYLSEISHQFQ---GASYCYGGGY 296


>gi|77461540|ref|YP_351047.1| hypothetical protein Pfl01_5319 [Pseudomonas fluorescens Pf0-1]
 gi|77385543|gb|ABA77056.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 228

 Score = 41.2 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 34/198 (17%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGV--KLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIP 101
           +     Y AG++DF    ++E +  +L L        +      I   + + I +     
Sbjct: 41  EALREAYAAGLRDFGENYLQEALGKQLELA--DLP-LIWHFIGPIQSNKTRSIAEHFAW- 96

Query: 102 VISSVPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155
            + SV +L    +L          ++    + V    ++ G + Q+              
Sbjct: 97  -VHSVDRLKIAQRLSEQRPADLPPLNICIQVNVSGEASKSGCTPQDLPALAQAISALPRL 155

Query: 156 QLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH------ 209
           +L  ++     A    +   + Q   F  +     G++  L      L     H      
Sbjct: 156 KLRGLM-----AIPEPTEDRAEQDAAFAAVQKLQAGLDLPLD----TLSMGMSHDLESAI 206

Query: 210 ---FQLTRPGISLYGGTD 224
                  R G +L+G  D
Sbjct: 207 AQGATWVRIGTALFGARD 224


>gi|300725221|ref|YP_003714549.1| hypothetical protein XNC1_4463 [Xenorhabdus nematophila ATCC 19061]
 gi|297631766|emb|CBJ92485.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 391

 Score = 41.2 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 64/245 (26%), Gaps = 27/245 (11%)

Query: 49  APALYNAGVQDFFVTS-VEEGVKLRLYTPQ-ARI--FVLYGIHPGQEKIIFDTNLIPVIS 104
           A  L   G +   V     E   L  +      I   V    H  +  +    ++I V S
Sbjct: 70  AKKLIEIGYRGV-VAVDFREAYSLSQHGIPLCHIGHLVQTPTHLIETMLKHHPDIITVFS 128

Query: 105 SVPQLTFYSKLMSCGVSHPYALQV----DTGF--NRLGLSLQEALDFTHNSFNKKLGQLS 158
                         G+  P  L+V    D  F     G++  E              +LS
Sbjct: 129 LEKAQAISDAAEKLGLIQPVMLKVFDKRDIVFPYQESGITFNELDATVAALKRMPGIKLS 188

Query: 159 LIISHLACADDPSSHVNS----------VQLERFRTLISHYKGIEASLASSSGIL-LGPN 207
            + +H  C    + +  +              R   L      I A   SS   + L   
Sbjct: 189 GL-THFPCLSWDARYKTTLPTINLLTLIRARNRVEQLGVKLSQINAPSVSSCNTIPLLAK 247

Query: 208 YHFQLTRPGISLYGGTDK-INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDS 266
           Y      PG +L G     ++   P    +     I             YGG        
Sbjct: 248 YGATHLEPGHALTGTIPANLSGQEPEHIAMVYVTEISH---HYDDNSYCYGGGYYKRGQM 304

Query: 267 LIAVA 271
             A+ 
Sbjct: 305 KHALV 309


>gi|167750503|ref|ZP_02422630.1| hypothetical protein EUBSIR_01479 [Eubacterium siraeum DSM 15702]
 gi|167656429|gb|EDS00559.1| hypothetical protein EUBSIR_01479 [Eubacterium siraeum DSM 15702]
          Length = 241

 Score = 41.2 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 40/245 (16%)

Query: 2   HSNEFLRLK-IDLT--ALKNNWHSMNALSG---NARTAAVVKDNAYGLGCEKIAPA--LY 53
            S E   L+ I L   A+K N       +G     R  AV K                  
Sbjct: 7   KSAEETTLEDIKLNYTAVKQNIAEAMDKAGRCDTVRIMAVTKT-------VPCEKINYAE 59

Query: 54  NAGVQDFFVTSVEEGVKLRLYTP------QARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
           + G+       V+E +             ++ I  + G+   + K I D   + +I SV 
Sbjct: 60  SLGIDLLGENRVQEFL-----GKYENYSEKSEIHFIGGLQKNKVKYIIDK--VSMIHSVD 112

Query: 108 QLTFYSKLMSCGVSHPYA----LQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
            +   +++     SH       L+++ G   ++ G++  E ++        +  ++  ++
Sbjct: 113 SVELAAEIDRRAGSHGLVKDILLEINIGGEESKGGIAPSELIETAKAVSGLENVRIRGLM 172

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGI 217
           + +   +    +  S+Q E F      Y  +      S+  S        Y   L R G 
Sbjct: 173 T-IPPVNCDEKYFASMQ-ELFENSKQKYSFLSGMDTLSMGMSGDYATAVKYGSTLVRIGS 230

Query: 218 SLYGG 222
            L+G 
Sbjct: 231 GLFGY 235


>gi|15967083|ref|NP_387436.1| hypothetical protein SMc02812 [Sinorhizobium meliloti 1021]
 gi|307302545|ref|ZP_07582302.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
 gi|307316124|ref|ZP_07595568.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
 gi|15076356|emb|CAC47909.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306897964|gb|EFN28706.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
 gi|306903215|gb|EFN33805.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
          Length = 219

 Score = 41.2 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 16/146 (10%)

Query: 45  CEKIAPAL--------YNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEK 92
              ++             AG + F    V+E       L+  TP   + ++  +   +  
Sbjct: 30  LVAVSKTFDAETIRPVIEAGQRVFGENRVQEAQAKWPALKRETPDIELHLIGPLQSNKAA 89

Query: 93  IIFDT-NLIPVISSVP-QLTFYSKLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
                 ++I  I          +++   G      +QV+TG      G++ ++A  F   
Sbjct: 90  DAVALFDVIETIDREKIARAVAAEMKRQGRDIRLYVQVNTGLEPQKAGIAPEDAAAFVAL 149

Query: 149 SFNKKLGQLSLIISHLACADDPSSHV 174
             ++    +  ++      ++P  H 
Sbjct: 150 CRDELALNIEGLMCIPPFDENPGPHF 175


>gi|172062516|ref|YP_001810167.1| alanine racemase domain-containing protein [Burkholderia ambifaria
           MC40-6]
 gi|171995033|gb|ACB65951.1| alanine racemase domain protein [Burkholderia ambifaria MC40-6]
          Length = 376

 Score = 41.2 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 36/204 (17%)

Query: 11  IDLTALKNNWHSMNAL-----------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ID+  ++NN   M A                +   VV  +A      +IA     AG Q 
Sbjct: 13  IDVDRMRNNIARMQAHLDALGVKFRPHVKTTKCQQVV--DA------QIA-----AGAQG 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT--NLIPVISSVPQLTFYSKL 115
             V++++E  +      +  ++ +  I    GQ   +     +L  V  S+      ++ 
Sbjct: 60  ITVSTLKEAEQFFAAGVRDIVYAVGMIPAKLGQALALRRQGCDLKIVADSLQTANSIAEF 119

Query: 116 -MSCGVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSH 173
               G      ++VD   +R G+   + L      +       L  +++H   + +  +H
Sbjct: 120 GREHGERFDVWIEVDVDGHRSGIRPDDGLLIDVGRALVDGGMALGGVLAHAGSSYEYDTH 179

Query: 174 VNSVQLERFRTLISHYKGIEASLA 197
                 +    +    +G     A
Sbjct: 180 ------DALVAIAEQERGRTVHAA 197


>gi|114566485|ref|YP_753639.1| hypothetical protein Swol_0953 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337420|gb|ABI68268.1| protein of unknown function UPF0001 [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 225

 Score = 41.2 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 30/178 (16%)

Query: 16  LKNNWHSMN-----------ALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFF 61
           +KNNW S+              +      AV   V          +     ++ G+ DF 
Sbjct: 4   IKNNWESIKNKIEQAAFKSGRKASEVTLVAVSKTV--------DIETVRRAHSLGINDFG 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121
              V E +  R   P     ++  +   + K I       +I S+ +     +L   G+ 
Sbjct: 56  ENRVNELLSKRESLPGINWHLIGRLQTNKVKDIV--GRTTLIHSLDRWRLAQELDKRGLV 113

Query: 122 HPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               + V    N      + G    E  +    +   K  ++  +++      DP   
Sbjct: 114 LEQEVPVLIQLNISGEEQKAGFKPTELGEVLAAAEQFKALRIYGLMTMAPLDPDPERA 171


>gi|154251070|ref|YP_001411894.1| alanine racemase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154155020|gb|ABS62237.1| alanine racemase domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 381

 Score = 41.2 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 26/146 (17%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +DL A + N   M             +A+T            C  IA A   AG    
Sbjct: 27  LVLDLDAFERNVARMAEHCKVSNLSIRPHAKT----------HKCVTIAKAQIAAGAVGQ 76

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT----NLIPVISS-VPQLTFYS 113
               + E   +     ++ I +   +    G E+++       +L+ V+ + V      +
Sbjct: 77  CCAKLGEAEAMAAGGIES-ILITSPVVTVQGIERLMALNEKMPDLMVVVDNPVNARALAA 135

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSL 139
                       + +D G +R G+  
Sbjct: 136 AAAEKKRVLKVLVDLDVGLHRTGIRP 161


>gi|218462257|ref|ZP_03502348.1| probable ornithine decarboxylase protein [Rhizobium etli Kim 5]
          Length = 377

 Score = 41.2 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 28/200 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+ +      ++     VK N A      ++   L   G       V  +
Sbjct: 20  LVVDLDVVRDNFQAFRHAMPDSAIYYAVKANPA-----PEVLKLLAGLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  + L      A           +  +     L   + +V       K+          
Sbjct: 75  E--MAL-DAGATAARISFGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVF 131

Query: 126 LQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            +V T         +R  G   Q A+D    +    L Q   +  H+             
Sbjct: 132 CRVLTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGL-QSYGVSFHVGSQMTK------- 183

Query: 178 QLERFRTLISHYKGIEASLA 197
            ++ + + ++  K +  SLA
Sbjct: 184 -VDAWDSALADAKRVFVSLA 202


>gi|330899492|gb|EGH30911.1| alanine racemase [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330940623|gb|EGH43657.1| alanine racemase [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330976056|gb|EGH76122.1| alanine racemase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 378

 Score = 41.2 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 81/265 (30%), Gaps = 49/265 (18%)

Query: 12  DLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           D++ +++N   M                 ++   V+              A   AG    
Sbjct: 16  DVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVI-------------QAQIAAGASGV 62

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN--------LIPVISSVPQLTFY 112
            V++++E            +F    I PG+ +              L   +++   +  +
Sbjct: 63  TVSTLKEAEHCFAEGID-DVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVTAARAIVAF 121

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPS 171
            +           +++D   +R GL++ + +L    ++      QL  +++H   + D  
Sbjct: 122 GQAHDERFD--VWIEIDCDGHRSGLTVDDPSLVEVASTLVDGGMQLRGVMTHAGSSYDLD 179

Query: 172 SHVNSVQLERFRTLI----------SHYKGIEASLASSSGILLGPNYHFQL-TRPGISLY 220
           +      L      +          +     + S+ S+   L   + H     R G+ ++
Sbjct: 180 TPAALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTALSAQSLHGVTEVRAGVYVF 239

Query: 221 --GGTDKINKSHPMQTVVTAEARII 243
                  I      +  ++    +I
Sbjct: 240 FDLVMHNIGVCQADELALSVLTTVI 264


>gi|71280182|ref|YP_271526.1| putative threonine aldolase [Colwellia psychrerythraea 34H]
 gi|71145922|gb|AAZ26395.1| putative threonine aldolase [Colwellia psychrerythraea 34H]
          Length = 382

 Score = 41.2 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 51/184 (27%), Gaps = 34/184 (18%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV---VKDNAYGLG----CEKIAPALYNAGVQDFF 61
           L +DL AL+ N   M   +       V   V       G       IA  L         
Sbjct: 29  LIVDLDALERNITKMGQFAKE---MGVRHRV------HGKMHKSVDIA-FLQEKLGDSCG 78

Query: 62  VTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVPQLTFYS 113
           V    V E         +  + V   +  P +   +          +  +  +  +   +
Sbjct: 79  VCCQKVSEAEVFARGGIK-DVLVSNQVREPAKIDRLARLPKLGARTLVCVDDLENVAELA 137

Query: 114 KLMSC-GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLI------ISHLA 165
             ++         +++D G  R G+S  Q  +D             S I      + H+ 
Sbjct: 138 AAVNKHDTQIECLVEIDCGAGRCGVSEGQPVVDIAKAIAATPGLTFSGIQAYQGAMQHME 197

Query: 166 CADD 169
              +
Sbjct: 198 SYQE 201


>gi|327539588|gb|EGF26197.1| alanine racemase domain protein [Rhodopirellula baltica WH47]
          Length = 368

 Score = 41.2 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 27/206 (13%)

Query: 14  TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72
             ++ N   M  ++G A +    VK          I      +G+  F   ++ E     
Sbjct: 17  DRVQANLDRMIEMAGGAYKLRPHVKT----HKMPAIVELSIASGITRFKSATIAEAEMTA 72

Query: 73  LYTPQARIFVLYGIHPG---QEKIIFDT---------NLIPVISSVPQLTFYSKLMSCGV 120
                  +  +  + P      K+I            + + V++S+      +     G+
Sbjct: 73  EAGAVDVLLAVQPVGPNIGRFVKLIQRYPGCAFSCLVDDLSVLASLE-----AAFELAGL 127

Query: 121 SHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + +D G +R G++  + A +   +       +L+ I  +     D  S     Q 
Sbjct: 128 RGSVWIDIDVGMHRTGIAPNDSATELVRSIQTSDHVRLAGIHVYDGHLHDTDSEKLRRQF 187

Query: 180 -ERFRTLISHYKGIEASLASSSGILL 204
            E  +     ++ I+    +S G L 
Sbjct: 188 DEAVKPFWIWFEDIQR---ASGGQLN 210


>gi|255099568|ref|ZP_05328545.1| putative amino acid racemase [Clostridium difficile QCD-63q42]
          Length = 354

 Score = 41.2 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 121/361 (33%), Gaps = 58/361 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFV 62
           + RL+ID+  LK+N   ++ +    N + + V K         ++I   + + G+     
Sbjct: 2   YPRLEIDIEKLKHNAKLISQMCHERNIKISFVTKSFC----AQKEIVEEICSEGIDHIAD 57

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
           + ++    L+         ++      + + + +   I   S +  +   ++L  S  + 
Sbjct: 58  SRIQNLKNLQD--INLPKILIRIPMLSELEEVINYCDISFNSELGTIKKLNELCESKNII 115

Query: 122 HPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQ 178
           H   L  D G  R G    ++  +        K  ++  I ++L C  A  PS       
Sbjct: 116 HKIVLMFDLGDLREGYFYEEDFFNNVREIVRLKNIEIIGIATNLTCYGAIIPSRENIGRL 175

Query: 179 LERFRTLISHYKGIEASLA---SSSGILL-----GPNYHFQLTRPGISLYGGTDKINKSH 230
           +   + +   + GI   +    +SS I L      P     L      L G      ++ 
Sbjct: 176 VSIAKRMEEKF-GINLEIVSGGNSSSIHLLINNNMPEGITNLRIGESILLGRETAYGENI 234

Query: 231 P--MQTVVTAEARIILIRK---ALAGELV--------SYGGQKKLTRDSLIAVAAIGYAD 277
               Q       +++  ++      GE+          Y  +  L R    A+ AIG   
Sbjct: 235 NGTYQDAFKLICQVVECKEKPSVPIGEIGVDAFRNKPVYEDKGILKR----AIIAIG--- 287

Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI 336
                    D      + +     I G         + D  + D++++    ++GD ++ 
Sbjct: 288 -------KQDINIDSLIPIDTDIKILG--------ASSDHMILDVSNTKYDYKLGDNLEF 332

Query: 337 F 337
            
Sbjct: 333 L 333


>gi|149909881|ref|ZP_01898531.1| metal-activated pyridoxal enzyme [Moritella sp. PE36]
 gi|149807046|gb|EDM67004.1| metal-activated pyridoxal enzyme [Moritella sp. PE36]
          Length = 363

 Score = 41.2 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 37/187 (19%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L ID   L +N  +M   +         +A+T            C +I     +AG    
Sbjct: 14  LVIDKRKLMHNIETMQKFAAAKSKHVRPHAKT----------HKCVEICQLQLDAGSIGI 63

Query: 61  FVTSVEEGVKL-----RLYTPQARIFVLYGIHPGQEKIIFDT-NLIP----VISSVPQLT 110
            +T   E  +L     R     + I     +   +   +     L P    V+ S   LT
Sbjct: 64  SITKPSEAYELAKAHIRHLLITSPI-----VTKHKLATLAKIIKLAPETMIVVDSETNLT 118

Query: 111 FYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLAC 166
             ++L           + +D G  R G S + A D     H + N  L  +     H   
Sbjct: 119 QLNQLGSELNQRINLVVDIDAGIGRTGASFETAFDLALSVHRNANTTLKGIQCYAGHFQH 178

Query: 167 ADDPSSH 173
             D    
Sbjct: 179 ILDNEER 185


>gi|262379205|ref|ZP_06072361.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262298662|gb|EEY86575.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 236

 Score = 41.2 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 66/192 (34%), Gaps = 14/192 (7%)

Query: 48  IAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103
           +   +Y AG + F    ++E ++    L+          +  +   + K++ +      +
Sbjct: 47  VLREMYQAGQRSFGENYLQEALEKIHSLQDLN-DIEWHFIGHVQRNKTKLLAENFDW--V 103

Query: 104 SSVPQLTFYSKL------MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL 157
             V +L    +L          ++    + +D   ++ G + ++  +            L
Sbjct: 104 HGVDRLIIAERLSAQRPEQRAALNICIQVNIDGQESKDGCTPEQVAELVKMISQLPNLCL 163

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPG 216
             ++   A     +         + RT  +H +  +  S+  S+ +         + R G
Sbjct: 164 RGLMVIPAPGHTDAFEHTRQLFNQVRTFHAHPQVWDTLSMGMSADLEAAVVAGSTMVRIG 223

Query: 217 ISLYGGTDKINK 228
            +L+G  D  +K
Sbjct: 224 TALFGTRDYSDK 235


>gi|27379075|ref|NP_770604.1| hypothetical protein bll3964 [Bradyrhizobium japonicum USDA 110]
 gi|27352225|dbj|BAC49229.1| bll3964 [Bradyrhizobium japonicum USDA 110]
          Length = 359

 Score = 41.2 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 42/176 (23%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEK---------IAPALYNAGVQD 59
             ID+  ++ N   +      A        N                 IA     AG + 
Sbjct: 18  AVIDMDKVERNIARIQKACDEAGV-----AN------RPHIKTHKNPTIAKMQIAAGAK- 65

Query: 60  FFVTS--VEEGVKLRLYTPQARIFV----LY-------GIHPGQEKIIFDTNLIPVISSV 106
             +T   + E   +        I +    L        G    +  +    +   V++ +
Sbjct: 66  -GITCQKLGEAEIMANAGID-DILISYNLLGEEKMARLGALQAKANMTVAADNSTVVAGL 123

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLII 161
           P         + G      ++ DTG  R G+    EA+         K  + +  +
Sbjct: 124 P-----KAAAASGRPLSVVVECDTGRKRAGVETPAEAIALAREIAGSKGLEFAGFM 174


>gi|331015908|gb|EGH95964.1| hypothetical protein PLA106_07905 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 378

 Score = 41.2 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104
              +  A   AG +   V++++E          + +F    I PG+         I    
Sbjct: 47  SLPVIQAQMAAGARGVTVSTLKEAEHCFAEGI-SDVFYAVAIAPGKLDQALKLRRIGCRL 105

Query: 105 SV--PQLTFYSKLMSCGVSHP----YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQL 157
           S+    +     +++ G  H       +++D   +R GL++++ AL     +  +   QL
Sbjct: 106 SILTDSVVAAQAIVAFGQQHDEQFQVWIEIDCDGHRSGLTVEDNALIEVARTLVEGGMQL 165

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLI 186
             +++H   + D  +      L     L+
Sbjct: 166 RGVMTHAGSSYDLDTPEALQALAEQERLL 194


>gi|28870797|ref|NP_793416.1| hypothetical protein PSPTO_3640 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28854046|gb|AAO57111.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 378

 Score = 41.2 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104
              +  A   AG +   V++++E          + +F    I PG+         I    
Sbjct: 47  SLPVIQAQMAAGARGVTVSTLKEAEHCFAEGI-SDVFYAVAIAPGKLDQALKLRRIGCRL 105

Query: 105 SV--PQLTFYSKLMSCGVSHP----YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQL 157
           S+    +     +++ G  H       +++D   +R GL++++ AL     +  +   QL
Sbjct: 106 SILTDSVVAAQAIVAFGQQHDEQFQVWIEIDCDGHRSGLTVEDNALIEVARTLVEGGMQL 165

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLI 186
             +++H   + D  +      L     L+
Sbjct: 166 RGVMTHAGSSYDLDTPEALQALAEQERLL 194


>gi|15601977|ref|NP_245049.1| hypothetical protein PM0112 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|34223056|sp|Q9CPD5|Y112_PASMU RecName: Full=UPF0001 protein PM0112
 gi|12720324|gb|AAK02196.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 233

 Score = 41.2 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPA--------LYNAGVQDFFVT 63
           +L  ++ N       +      + VK          ++           Y AG   F   
Sbjct: 6   NLAQIQQNIQHAVQQAKRPE--SAVK-------LLAVSKTKPVEDIYQAYQAGQTAFGEN 56

Query: 64  SVEEGVKLRLYTPQARIFV----LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V+EGV+   Y  Q  I +    +  +   + K++ +      + ++ +     +L    
Sbjct: 57  YVQEGVEKIQYFAQKNIPLEWHFIGPLQSNKTKLVAEHFDW--MQTLDRKKIADRLNEQR 114

Query: 120 VSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             +   L V    N      + G+   E LD      N     L  ++   A        
Sbjct: 115 PHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQIQNLPHLCLRGLM---AIPAPTDDL 171

Query: 174 VNSVQ-----LERFRTLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD 224
               Q        F  L       +    S+  +  +         + R G +++G  D
Sbjct: 172 ATQEQAFTQMHSLFEQLKQALPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARD 230


>gi|213968918|ref|ZP_03397058.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|213926217|gb|EEB59772.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 378

 Score = 41.2 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104
              +  A   AG +   V++++E          + +F    I PG+         I    
Sbjct: 47  SLPVIQAQMAAGARGVTVSTLKEAEHCFAEGI-SDVFYAVAIAPGKLDQALKLRRIGCRL 105

Query: 105 SV--PQLTFYSKLMSCGVSHP----YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQL 157
           S+    +     +++ G  H       +++D   +R GL++++ AL     +  +   QL
Sbjct: 106 SILTDSVVAAQAIVAFGQQHDEQFQVWIEIDCDGHRSGLTVEDNALIEVARTLVEGGMQL 165

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLI 186
             +++H   + D  +      L     L+
Sbjct: 166 RGVMTHAGSSYDLDTPEALQALAEQERLL 194


>gi|187779310|ref|ZP_02995783.1| hypothetical protein CLOSPO_02906 [Clostridium sporogenes ATCC
           15579]
 gi|187772935|gb|EDU36737.1| hypothetical protein CLOSPO_02906 [Clostridium sporogenes ATCC
           15579]
          Length = 386

 Score = 41.2 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 61/214 (28%), Gaps = 49/214 (22%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEK------------IAPALYNAGVQ 58
           IDL  + +N   +   +             YG   E             +   L   G +
Sbjct: 33  IDLDNIVDNARKIKEEADK-----------YG--IELYFMTKQFGRNPIVCHELMKLGYK 79

Query: 59  DFFVTSVE--EGVKLRLYTPQARIFVLYGI-------HPGQEKIIFDTNLIPVISSVPQL 109
              V +V+  E + L+          L  +           E II     +  + SV + 
Sbjct: 80  G-AV-TVDFKEAITLKENNIS-----LGHVGHLVQIPTHSMEDIIEAKPEVITVYSVEKA 132

Query: 110 TFYSK-LMSCGVSHPYALQV----DTGF--NRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
              SK     G+     ++V    DT +     G  L++ ++            +  I +
Sbjct: 133 VEVSKVAQKLGLVQNIMIRVLDDEDTLYPAQYGGFYLKDLIEKAKEIKKLPNINIYGI-T 191

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
              C        +       +TL    K +E  L
Sbjct: 192 SFPCFLYDEKEGDIKATNNVQTLKKAQKLLENHL 225


>gi|301385360|ref|ZP_07233778.1| hypothetical protein PsyrptM_22109 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061234|ref|ZP_07252775.1| hypothetical protein PsyrptK_14691 [Pseudomonas syringae pv. tomato
           K40]
 gi|302133133|ref|ZP_07259123.1| hypothetical protein PsyrptN_17164 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 359

 Score = 41.2 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104
              +  A   AG +   V++++E          + +F    I PG+         I    
Sbjct: 28  SLPVIQAQMAAGARGVTVSTLKEAEHCFAEGI-SDVFYAVAIAPGKLDQALKLRRIGCRL 86

Query: 105 SV--PQLTFYSKLMSCGVSHP----YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQL 157
           S+    +     +++ G  H       +++D   +R GL++++ AL     +  +   QL
Sbjct: 87  SILTDSVVAAQAIVAFGQQHDEQFQVWIEIDCDGHRSGLTVEDNALIEVARTLVEGGMQL 146

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLI 186
             +++H   + D  +      L     L+
Sbjct: 147 RGVMTHAGSSYDLDTPEALQALAEQERLL 175


>gi|302189818|ref|ZP_07266491.1| hypothetical protein Psyrps6_25881 [Pseudomonas syringae pv.
           syringae 642]
          Length = 228

 Score = 41.2 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 73/240 (30%), Gaps = 50/240 (20%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           Y AG++DF 
Sbjct: 4   IAANISTLEQRIRDAALAAERDPASV--------GLLAVSKTKPASDLREAYTAGLRDFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELSDLPLCWHFIGPIQSNKTRAIAENFDW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + V    ++ G + Q+              +L  ++     A    + 
Sbjct: 114 PEALEPLNICIQVNVSGEASKSGCTPQDLPALAAAIMALPRLRLRGLM-----AIPEPTD 168

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQLTRPGISLYGGTD 224
            ++ Q   F  + +  + +   L      L     H             R G +L+G  D
Sbjct: 169 DSAAQNASFAAVRTLQQQLNLPLD----TLSMGMSHDLEAAIAQGATWVRIGTALFGARD 224


>gi|255319900|ref|ZP_05361101.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter
           radioresistens SK82]
 gi|255303033|gb|EET82249.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter
           radioresistens SK82]
          Length = 231

 Score = 41.2 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 66/192 (34%), Gaps = 14/192 (7%)

Query: 48  IAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103
           +   +Y AG + F    ++E ++    L+          +  +   + K++ +      +
Sbjct: 42  VLREMYQAGQRSFGENYLQEALEKIHSLQDLN-DIEWHFIGHVQRNKTKLLAENFDW--V 98

Query: 104 SSVPQLTFYSKL------MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL 157
             V +L    +L          ++    + +D   ++ G + ++  +            L
Sbjct: 99  HGVDRLIIAERLSAQRPEQRAALNICIQVNIDGQESKDGCTPEQVAELVKMISQLPNLCL 158

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPG 216
             ++   A     +         + RT  +H +  +  S+  S+ +         + R G
Sbjct: 159 RGLMVIPAPGHTDAFEHTRQLFNQVRTFHAHPQVWDTLSMGMSADLEAAVVAGSTMVRIG 218

Query: 217 ISLYGGTDKINK 228
            +L+G  D  +K
Sbjct: 219 TALFGTRDYSDK 230


>gi|73748569|ref|YP_307808.1| hypothetical protein cbdb_A730 [Dehalococcoides sp. CBDB1]
 gi|147669329|ref|YP_001214147.1| alanine racemase domain-containing protein [Dehalococcoides sp.
           BAV1]
 gi|289432595|ref|YP_003462468.1| alanine racemase domain protein [Dehalococcoides sp. GT]
 gi|73660285|emb|CAI82892.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
 gi|146270277|gb|ABQ17269.1| alanine racemase domain protein [Dehalococcoides sp. BAV1]
 gi|288946315|gb|ADC74012.1| alanine racemase domain protein [Dehalococcoides sp. GT]
          Length = 220

 Score = 40.8 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 29/174 (16%)

Query: 14  TALKNNWH-SMNALSGNARTAAVVK----DNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
             +  N    +  L  +    A VK             +I  A   AGV+      + E 
Sbjct: 3   ENIAQNVRDILAELPPDVVLVAAVKKRQPA--------EIL-AAIAAGVKIIGHNYLSEA 53

Query: 69  VK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL----MSCGV 120
            +    +     +A    +  +   + K I    L  V+ +V      S+L         
Sbjct: 54  EETYPFI---GDKAEWHFIGKLQSNKCKKIV--RLFSVVETVDSFEIASELNRRAAEIDK 108

Query: 121 SHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                +++++G  +   G+  +E ++           +L+ +++     +DP  
Sbjct: 109 VMSVFIEINSGREKQKSGVLPEETVELAKRISGLSNLKLAGLMTMGPALEDPEE 162


>gi|330986553|gb|EGH84656.1| alanine racemase domain-containing protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 378

 Score = 40.8 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 14/159 (8%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLI 100
             +  A   AG     V++++E            +F    I PG+             L 
Sbjct: 48  LPVIQAQIAAGASGVAVSTLKEAEHCFAEGIN-DVFYAVAIAPGKLDQALKLRRNGCRLS 106

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLS 158
            +  SV               +    +++D   +R GL++ + +L     +  +    L 
Sbjct: 107 ILTDSVVAAQAIVAFGQRHDENFDVWIEIDCDGHRSGLTVDDPSLVEVARTLIEGGMHLR 166

Query: 159 LIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
            +++H   + D  +       E  + L    + +  S A
Sbjct: 167 GVMTHAGSSYDLDTP------EALQALAEQERRLCVSAA 199


>gi|149915930|ref|ZP_01904454.1| alanine racemase-like protein [Roseobacter sp. AzwK-3b]
 gi|149810253|gb|EDM70099.1| alanine racemase-like protein [Roseobacter sp. AzwK-3b]
          Length = 387

 Score = 40.8 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 58/215 (26%), Gaps = 45/215 (20%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYNAGV 57
           L +DL AL+ N   M   +         K      G              +A      G 
Sbjct: 32  LVLDLDALERNIRKMGDYA---------KA----HGMRHRVHGKMHKSVDVAKLQVELGG 78

Query: 58  QDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVPQL 109
               V    V E         +  + V   +  P +   +          I  +  +  +
Sbjct: 79  AC-GVCCQKVSEAEVFARGGIK-DVLVSNQVREPAKIDRLARMPKLGARTICCVDDIDNV 136

Query: 110 TFYSKLMSC-GVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLI------I 161
              S      G      +++D G  R G++   + +            + + +      +
Sbjct: 137 ADLSAAAQKHGTQIECLVEIDCGAGRCGVTQTADVVRIAKAIDAAPGLKFAGLQAYQGAM 196

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYK--GIEA 194
            H+  + +       + +   R  +   K  GIE 
Sbjct: 197 QHM-DSYEDRKTKVDIAIAMVRDAVDALKADGIEC 230


>gi|332285912|ref|YP_004417823.1| alanine racemase-like protein [Pusillimonas sp. T7-7]
 gi|330429865|gb|AEC21199.1| alanine racemase-like protein [Pusillimonas sp. T7-7]
          Length = 388

 Score = 40.8 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 16/132 (12%)

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQLTFYSKL- 115
           V++++E      +     I    GI   +   +         L  V+ +       ++  
Sbjct: 71  VSTLKEAEYFLEHGWH-DILYAVGIAKNKFAHVVRLMQKGARLTVVLDNTESARALAQFC 129

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQ-----EALDFTHNSFNKKLGQLSLIISH----LAC 166
               ++ P  +++DT  +R G+  +     E  D    S  +    L+ +++H     AC
Sbjct: 130 REQTLTIPVLIEIDTDGHRSGVPPEASLLLEIADLLGRSEAEGGAWLAGVMTHAGASYAC 189

Query: 167 ADDPSSHVNSVQ 178
                    + Q
Sbjct: 190 TSADQIEAMAEQ 201


>gi|241206375|ref|YP_002977471.1| Orn/DAP/Arg decarboxylase 2 [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860265|gb|ACS57932.1| Orn/DAP/Arg decarboxylase 2 [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 377

 Score = 40.8 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 28/200 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+H+      ++     VK N A      ++   L   G       V  +
Sbjct: 20  LVVDLDVVRDNFHAFRHAMPDSAIYYAVKANPA-----PEVLKLLAGLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++       A           +  +     L   + +V       K+          
Sbjct: 75  EMALE---AGATAARISYGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVF 131

Query: 126 LQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            +V T         +R  G   Q A+D    +    L Q   +  H+             
Sbjct: 132 CRVLTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGL-QSYGVSFHVGSQMTK------- 183

Query: 178 QLERFRTLISHYKGIEASLA 197
            ++ + + ++  K +  SLA
Sbjct: 184 -VDAWDSALADAKRVFVSLA 202


>gi|254503042|ref|ZP_05115193.1| Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein
           [Labrenzia alexandrii DFL-11]
 gi|222439113|gb|EEE45792.1| Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein
           [Labrenzia alexandrii DFL-11]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 23/174 (13%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEK-IAPALYNAGVQDFFVTSVEEGVKLRLY 74
           L+ +  +   L       AV K N      E  +   L  AG   F V S  E   +R  
Sbjct: 28  LRADAQNFKKLFPGKTAYAV-KTNG-----EPFVLKELAAAGYDCFDVASPAEFAAVREA 81

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKL----------MSCGVSHP 123
           +P+A +  ++ I      ++  +   I V+S   +      L              +   
Sbjct: 82  SPKAEMLYMHPIKAQSDIRLALEQYGIRVMSLDHEDEVAKILRIVRALDIDPAKITLFVR 141

Query: 124 YALQVDTGF---NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
            A +    +    + G +   A++        ++G    +  H+    +     
Sbjct: 142 IATKGHAAYELSKKFGAAPGHAVELLQRI--HRIGFKCGLCFHVGSQIEEPETY 193


>gi|217077735|ref|YP_002335453.1| ornithine decarboxylase [Thermosipho africanus TCF52B]
 gi|217037590|gb|ACJ76112.1| ornithine decarboxylase [Thermosipho africanus TCF52B]
          Length = 387

 Score = 40.8 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 16/165 (9%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71
           DL  +++N+  +     N++    VK N+      +I   L + G   F V S  E  KL
Sbjct: 25  DLEVVRDNYKRLVENVKNSKIYYAVKANS--H--IEILKLLRDLG-SYFDVASRPEIEKL 79

Query: 72  RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT- 130
                +               I F       + +V       K+          +++ T 
Sbjct: 80  LSIGVEPERMSFGNTIKKSSDIAFAYEKGIKMFAVDSEMEIEKIAKNAPGSDIYVRISTN 139

Query: 131 GF---------NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
           G           + G S+  A+     +++  L     +  H+  
Sbjct: 140 GMEDDADWPLTKKFGTSVDHAISLVKYAYSLGL-NPIGVSFHVGS 183


>gi|156307500|ref|XP_001617643.1| hypothetical protein NEMVEDRAFT_v1g225918 [Nematostella vectensis]
 gi|156194985|gb|EDO25543.1| predicted protein [Nematostella vectensis]
          Length = 228

 Score = 40.8 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 60/206 (29%), Gaps = 36/206 (17%)

Query: 44  GCEKIAPA--------LYNAGVQDFFVTSVEEGVK--LRLYTPQARIFVLYGIHPGQEKI 93
           G   ++           + AG +DF    ++E ++  + L         +  I   + K 
Sbjct: 30  GLLAVSKTKPAEAIRQAFAAGTRDFGENYLQEALEKQVELSDLPLTWHFIGPIQSNKTKP 89

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTH 147
           I +      + SV +L    +L     +H  AL +    N      + G +  E      
Sbjct: 90  IAEHFAW--VHSVDRLKIAQRLSDQRPAHLPALNICLQVNVSGEASKSGCNPDELPALAQ 147

Query: 148 NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPN 207
                    L  +++     +     V   Q   F  L    + +   L      L    
Sbjct: 148 AVTQLPNLCLRGLMT---IPEPTDDPV--EQRAAFARLRELQQDLNLDLD----TLSMGM 198

Query: 208 YH---------FQLTRPGISLYGGTD 224
            H             R G +L+G  D
Sbjct: 199 SHDLEAAIAEGATWVRIGTALFGARD 224


>gi|240948416|ref|ZP_04752794.1| hypothetical protein AM305_01454 [Actinobacillus minor NM305]
 gi|240297242|gb|EER47800.1| hypothetical protein AM305_01454 [Actinobacillus minor NM305]
          Length = 230

 Score = 40.8 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 73/200 (36%), Gaps = 22/200 (11%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ--ARI---FVLYGIHPGQEKIIFDT-NL 99
            +       AG + F    V+EGV+ ++   +    I   F+   +   + +++ +  + 
Sbjct: 37  VQAIEEAIQAGQKAFGENYVQEGVE-KINYFKENKEIEWHFI-GPLQSNKTRLVAEHFDW 94

Query: 100 IPVISSVPQLTFYSKLMSCGV---SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ 156
           I  +  +      ++    G    +    + +    ++ G++ +E L+  H   +    +
Sbjct: 95  IQTVDRLKIAERLNEQRPEGKAPLNVLIQINISDESSKSGIAPEEMLELAHKIASLPNLR 154

Query: 157 LSLIIS--HLACADDPSSHVNSVQLERFRTLISHYKGIEA-SLASS----SGILLGPNYH 209
           L  +++        +          + F  L   + GI+  S+  S    S I  G    
Sbjct: 155 LKGLMAIPKPESDPEQQKIAFRKMEQLFHRLQQAFSGIDTLSMGMSDDMQSAIECGST-- 212

Query: 210 FQLTRPGISLYGGTDKINKS 229
             + R G +++G  D   K+
Sbjct: 213 --MVRIGTAIFGKRDYGQKA 230


>gi|119475410|ref|ZP_01615763.1| hypothetical protein GP2143_16361 [marine gamma proteobacterium
           HTCC2143]
 gi|119451613|gb|EAW32846.1| hypothetical protein GP2143_16361 [marine gamma proteobacterium
           HTCC2143]
          Length = 230

 Score = 40.8 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 62/200 (31%), Gaps = 37/200 (18%)

Query: 19  NWHSMNALSGNAR-----------TAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           N   +     NA              AV K    +       ++      AG+ D     
Sbjct: 11  NIAKVRDRIRNAEEKYHRKPNTVALMAVSKTRSAD-------EV-RQAIAAGITDIGENY 62

Query: 65  VEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---- 118
           ++E +  +L L         +  I   + + I +      + SV +L    +L       
Sbjct: 63  LQEALDKQLHLTDIDVYWHFIGPIQSNKTRAIAEHFDW--VHSVDRLKIALRLNDQRPSG 120

Query: 119 GVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                  LQV+T    ++ G+SL++         +    QL  ++S    +D        
Sbjct: 121 MPPLNVCLQVNTSDENSKAGVSLEQLASLAEQVDSLPHIQLRGLMSIPQASDQAD----- 175

Query: 177 VQLERFRTLISHYKGIEASL 196
            Q   F  L   +  ++ + 
Sbjct: 176 EQQAAFAVLHHAFNKLQKTC 195


>gi|90418748|ref|ZP_01226659.1| ornithine decarboxylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336828|gb|EAS50533.1| ornithine decarboxylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 377

 Score = 40.8 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 19/201 (9%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+++      ++     VK N A      ++   L   G       V  V
Sbjct: 20  LIVDLDIVEDNFNAFRKALPDSAIFYAVKANPA-----PEVLKLLAGLGSNFDCASVAEV 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  + L       R          +  I     L   + +V  +    K+          
Sbjct: 75  E--MAL-NAGATPRRISYGNTIKKERDIARAHQLGVALFAVDCVEEVEKVARAAPGARVF 131

Query: 126 LQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            +V T         +R  G     A+D   ++    L    +     +   D  +   ++
Sbjct: 132 CRVLTDGEGAEWPLSRKFGCVPDMAIDVLVHANALGLVATGVSFHVGSQQTDTGAWDAAI 191

Query: 178 QLERFRTLISHYKGIEASLAS 198
              RF       KGI  +L +
Sbjct: 192 ADARFVFEALAEKGIVLTLVN 212


>gi|289678897|ref|ZP_06499787.1| alanine racemase, N-terminal [Pseudomonas syringae pv. syringae
           FF5]
          Length = 337

 Score = 40.8 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 81/265 (30%), Gaps = 49/265 (18%)

Query: 12  DLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           D++ +++N   M                 ++   V+              A   AG    
Sbjct: 19  DVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVI-------------QAQIAAGASGV 65

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN--------LIPVISSVPQLTFY 112
            V++++E            +F    I PG+ +              L   +++   +  +
Sbjct: 66  TVSTLKEAEHCFAEGID-DVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVTAARAIVAF 124

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPS 171
            +           +++D   +R GL++ + +L    ++      QL  +++H   + D  
Sbjct: 125 GQAHDERFD--VWIEIDCDGHRSGLTVDDPSLVEVASTLVDGGMQLRGVMTHAGSSYDLD 182

Query: 172 SHVNSVQLERFRTLI----------SHYKGIEASLASSSGILLGPNYHFQL-TRPGISLY 220
           +      L      +          +     + S+ S+   L   + H     R G+ ++
Sbjct: 183 TPAALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTALSAQSLHGVTEVRAGVYVF 242

Query: 221 --GGTDKINKSHPMQTVVTAEARII 243
                  I      +  ++    +I
Sbjct: 243 FDLVMHNIGVCQADELALSVLTTVI 267


>gi|310780038|ref|YP_003968370.1| alanine racemase [Ilyobacter polytropus DSM 2926]
 gi|309749361|gb|ADO84022.1| alanine racemase domain protein [Ilyobacter polytropus DSM 2926]
          Length = 355

 Score = 40.8 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 118/310 (38%), Gaps = 46/310 (14%)

Query: 48  IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN---LIPVIS 104
           IA +L ++G++    + VE   KL+    + +  +L    P Q   +   +   L+  I 
Sbjct: 44  IAQSLVDSGIEIIADSRVENLEKLKE--IKCKKMLLRIPMPSQADDVVRYSDIVLVSEIF 101

Query: 105 SVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISH 163
           ++       +  +        L +D G  R GL  + E L+        K  +L  + ++
Sbjct: 102 TI--KKLSEQASNQNKIIDLILMIDLGDLREGLFYEKEILETVAEIAQLKNVKLLGLGTN 159

Query: 164 LAC--ADDPSSHVNSVQLERFRTLISHYKGIEASL---ASSSGILLGPNYH----FQLTR 214
           L+C  A  PS  +    L   +  IS+   I+  +    +S  I L  +          R
Sbjct: 160 LSCYGAVIPSKEILEK-LVLIKNKISNLFNIDTEILSGGNSGSIRLFEDNQIPDGINQLR 218

Query: 215 PGISLYGGTDKINKSHPMQTVVT--AEARIILIRKALAGELVSYGGQKKLTRDSLI---- 268
            G S+  G    +      +  T   EA II +RK  +  +   G      + S I    
Sbjct: 219 LGASIILGIGIDHLPINGLSADTFILEAEIIELRKKPSKPIGKQGLDAFGNKPSFIDMGI 278

Query: 269 ---AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325
              A+ AIG  D  P  +S LD + +                 ILG  + D  + D+TDS
Sbjct: 279 RSKAICAIGRQDVNPEDVSPLDDKIN-----------------ILGG-SSDHLILDVTDS 320

Query: 326 L-SIEVGDYI 334
             S+ VGD I
Sbjct: 321 EKSLSVGDTI 330


>gi|302879877|ref|YP_003848441.1| alanine racemase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582666|gb|ADL56677.1| alanine racemase domain protein [Gallionella capsiferriformans
           ES-2]
          Length = 231

 Score = 40.8 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 16/152 (10%)

Query: 49  APALYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104
             + + AG + F  + ++E +     L     +        +   + + I +      + 
Sbjct: 43  VRSAFQAGQRRFAESYLQEALDKIAALDDLGIEWHFI--GPVQSNKTRPIAEHFCW--VH 98

Query: 105 SVPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
           SV +L    +L +        +     + +    ++ G+   E     H        QL 
Sbjct: 99  SVDRLKIAERLSAQRPVSLPPLQCCLQVNISDEDSKSGVRPDEVSQLAHEIACLPNLQLR 158

Query: 159 LIISHLACADDPSSHVNSVQLERFRTLISHYK 190
            +++    A      V      R R L    K
Sbjct: 159 GLMA--VPAPTDDPLVQRAAFARLRELYLQLK 188


>gi|148241568|ref|YP_001226725.1| TIM-barrel fold family protein [Synechococcus sp. RCC307]
 gi|147849878|emb|CAK27372.1| Predicted enzyme with a TIM-barrel fold [Synechococcus sp. RCC307]
          Length = 212

 Score = 40.8 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 26/155 (16%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLG--CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78
             +  L    +  AV K      G    +I  ALY  G + F  + V+E         Q 
Sbjct: 10  AILQELPPGVKLLAVSK------GRSAAEI-RALYGLGQRSFGESRVQEA-----ALKQQ 57

Query: 79  RIFVLYGIHPGQEKIIFDTNLIPV------ISSVPQLTFYSKLMSCGVSHPY------AL 126
            +  L  I       +    + PV      I +V      +++                L
Sbjct: 58  ELADLADIDWQFIGRLQANKVRPVLKAFTTIHAVDSFNLAARVSRIAGELGLCPQLYLQL 117

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
           ++    N+ GLS  EA        N        ++
Sbjct: 118 KLRPDANKAGLSWAEAQSLWPQLQNLPHVHWQGVM 152


>gi|307260503|ref|ZP_07542197.1| hypothetical protein appser12_780 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869815|gb|EFN01598.1| hypothetical protein appser12_780 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 227

 Score = 40.8 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 60/190 (31%), Gaps = 18/190 (9%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDT-NLIP 101
            +       AG   F    V+EGV+   Y  Q           +   + +++ +  + I 
Sbjct: 37  VEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQ 96

Query: 102 VISSVPQLTFYSKLMSCGV---SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
            +  +      S   S      +    + +     + G+  +E  +           +L 
Sbjct: 97  TVDRLKIAERLSAQRSANKAPLNVLIQINISDEAYKSGIQPEELDELAKAISQLPNLRLR 156

Query: 159 LIIS--HLACADDPSSHVNSVQLERFRTLISHYKGIEA-SLASS----SGILLGPNYHFQ 211
            +++        +          + F  L   ++GI+  S+  S    + I  G      
Sbjct: 157 GLMAIPKPESEPEQQKIALRKMRQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGST---- 212

Query: 212 LTRPGISLYG 221
           + R G +++G
Sbjct: 213 MVRIGTAIFG 222


>gi|153011211|ref|YP_001372425.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151563099|gb|ABS16596.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 354

 Score = 40.8 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 71/232 (30%), Gaps = 40/232 (17%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAV-------VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           ID+  +K N     A +      AV       +K           A     AG     +T
Sbjct: 17  IDIDRVKANIAKAQAHAD-----AVGVKLRPHIKT----HKLPLFAKMQVEAGAT--GIT 65

Query: 64  S--VEEGVKLRLYTPQARIFVLYGIHPGQEKII----FDTNLIPVISSVPQLTFYSKLMS 117
              + E   +        IF+ Y I  GQEK+         +   + +V   T  + L +
Sbjct: 66  CQKLGEAEVMADAGLT-NIFLPYNIL-GQEKLDRLHTLHQRITLSV-TVDNRTSLAGLAA 122

Query: 118 CGVSHPYALQV----DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                 + L+V    DTG  R G+ +  EAL+           +   +++    A  P  
Sbjct: 123 RFTDEKHPLKVLVECDTGMGRCGVQTPAEALELARIIDQSAGLRFGGLMT-YPAAGKPDE 181

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT----RPGISLY 220
              + Q       +     +     SS G                RPG  +Y
Sbjct: 182 ---AEQWLYSARELLEANSLPCETISSGGTPDMWRKPSDSVVTEYRPGTYIY 230


>gi|312961902|ref|ZP_07776399.1| alanine racemase [Pseudomonas fluorescens WH6]
 gi|311283712|gb|EFQ62296.1| alanine racemase [Pseudomonas fluorescens WH6]
          Length = 378

 Score = 40.8 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 36/206 (17%)

Query: 11  IDLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ID+  ++ N   M                 ++   V+          +IA     AG   
Sbjct: 15  IDIPRMQRNIQRMQQRLNDLGVRLRPHIKTSKCLPVI------H--AQIA-----AGASG 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSK 114
             V++++E         +  +F    I PG+            NL  +  SV        
Sbjct: 62  VTVSTLKEAQHCFAAGIR-DVFYAVAIAPGKLPQALALRRQGCNLSLLTDSVAGAEAIVA 120

Query: 115 -LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG--QLSLIISHLACADDPS 171
                       +++D   +R GL+  +A      + +   G   L  +++H   + +  
Sbjct: 121 FAQQQDERFDMWIEIDCDGHRSGLA-ADAPALLEVAQSLSNGGMHLRGVMTHAGSSYELD 179

Query: 172 SHVNSVQLERFRT--LISHYKGIEAS 195
           +      L        +   + I A+
Sbjct: 180 NPQALQALAEQERRLCVRAAENIRAT 205


>gi|298485009|ref|ZP_07003106.1| predicted pyridoxal phosphate-dependent enzyme [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160419|gb|EFI01443.1| predicted pyridoxal phosphate-dependent enzyme [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 228

 Score = 40.8 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 74/240 (30%), Gaps = 50/240 (20%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           Y AG+++F 
Sbjct: 4   IAANISTLEQRIRDAALAANREPASV--------GLLAVSKTKPAGDLREAYTAGLRNFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELSDLPLCWHFIGPIQSNKTRAIAENFAW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + V    ++ G + Q+  +           +L  ++   A  +     
Sbjct: 114 PEALEPLNICIQVNVSGEASKSGCTPQDLPELAAAIIALPRLKLRGLM---AIPEPTDDP 170

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQLTRPGISLYGGTD 224
             + Q   F  + +  + +  +L      L     H             R G +L+G  D
Sbjct: 171 --AAQHASFAAVRTLQEQLNLALD----TLSMGMSHDLEAAIAQGATWVRIGTALFGARD 224


>gi|302528756|ref|ZP_07281098.1| predicted protein [Streptomyces sp. AA4]
 gi|302437651|gb|EFL09467.1| predicted protein [Streptomyces sp. AA4]
          Length = 343

 Score = 40.4 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 12/133 (9%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG------ 89
           VK    G    ++A     AG     V +  E  +         +     I P       
Sbjct: 34  VK----GHRTVELARFQEAAGASGIAVHTTAEARRYLASGITDIVLAWPLISPERWSFFA 89

Query: 90  QEKIIFDTNLIPVISSVPQLTFYSKL--MSCGVSHPYALQVDTGFNRLGLSLQEALDFTH 147
                 D     V + V       +L  +        AL++D  F+  G++ +  LD   
Sbjct: 90  DFSAFADARGATVSAHVGDPDAVRQLGVLCTAAGTDLALRIDVHFDDRGIAPERVLDLAR 149

Query: 148 NSFNKKLGQLSLI 160
                    L  +
Sbjct: 150 LVETTPGVHLDGV 162


>gi|190149320|ref|YP_001967845.1| hypothetical protein APP7_0051 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307244852|ref|ZP_07526951.1| hypothetical protein appser1_660 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307253806|ref|ZP_07535660.1| hypothetical protein appser9_660 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258262|ref|ZP_07540005.1| hypothetical protein appser11_670 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|189914451|gb|ACE60703.1| hypothetical protein APP7_0051 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306854297|gb|EFM86503.1| hypothetical protein appser1_660 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306863290|gb|EFM95230.1| hypothetical protein appser9_660 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867722|gb|EFM99567.1| hypothetical protein appser11_670 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 227

 Score = 40.4 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 18/190 (9%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDT-NLIP 101
            +       AG   F    V+EGV+   Y  Q      + I P Q    +++ +  + I 
Sbjct: 37  VEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGPLQSNKTRLVAENFDWIQ 96

Query: 102 VISSVPQLTFYSKLMSCGV---SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
            +  +      S   S      +    + +    ++ G+  +E  +           +L 
Sbjct: 97  TVDRLKIAERLSVQRSANKAPLNVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLR 156

Query: 159 LIIS--HLACADDPSSHVNSVQLERFRTLISHYKGIEA-SLASS----SGILLGPNYHFQ 211
            +++        +          + F  L   ++GI+  S+  S    + I  G      
Sbjct: 157 GLMAIPKPESEPEQQKIALRKMQQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGST---- 212

Query: 212 LTRPGISLYG 221
           + R G +++G
Sbjct: 213 MVRIGTAIFG 222


>gi|86139515|ref|ZP_01058083.1| threonine aldolase, low-specificity [Roseobacter sp. MED193]
 gi|85823698|gb|EAQ43905.1| threonine aldolase, low-specificity [Roseobacter sp. MED193]
          Length = 388

 Score = 40.4 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 66/225 (29%), Gaps = 48/225 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPA-LYNAG 56
           L +DL AL+ N   M   +         K      G              +    +   G
Sbjct: 32  LVLDLDALERNIKKMGDYA---------KA----HGMRHRAHGKMHKSVDVLKLQMEIGG 78

Query: 57  VQDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDT------NLIPVISSVP 107
                V    V E         +  I V   +  PG+   +          +I  +  V 
Sbjct: 79  A--IGVCCQKVSEAEVFARAGIK-EILVSNQVRDPGKIARLVQLPKFSGGEVIVCVDDVA 135

Query: 108 QLTFY-SKLMSCGVSHPYALQVDTGFNRLG-------LSLQEALDFTHNSFNKKLGQLSL 159
            +    S   + G      +++D G  R G       + + +A+    N   + +     
Sbjct: 136 SVADLSSAAKNAGTELGVFIEIDCGAGRCGVTTTPAVVEIAKAVVAADNLTYRGIQAYQG 195

Query: 160 IISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            + H+  + D         + + +  ++  K  GIE  L S  G 
Sbjct: 196 AMQHM-DSFDDRKAKIDTAIRQVQDAVNALKDEGIETDLVSGGGT 239


>gi|32474294|ref|NP_867288.1| D-threonine aldolase, metal-activated pyridoxal enzyme
           [Rhodopirellula baltica SH 1]
 gi|32444832|emb|CAD74834.1| D-threonine aldolase, metal-activated pyridoxal enzyme
           [Rhodopirellula baltica SH 1]
          Length = 391

 Score = 40.4 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 27/206 (13%)

Query: 14  TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72
             ++ N   M  ++G A +    VK          I      +G+  F   ++ E     
Sbjct: 40  DRVQANLDRMIEMAGGADKLRPHVKT----HKMPAIVELSVASGITRFKSATIAEAEMTA 95

Query: 73  LYTPQARIFVLYGIHPG---QEKIIFDT---------NLIPVISSVPQLTFYSKLMSCGV 120
                  +  +  + P      K+I            + + V++S+      +     G+
Sbjct: 96  AAGAVDVLLAVQPVGPNIGRFIKLIQRYPGCLFSCLVDDLSVLASLE-----AAFELAGL 150

Query: 121 SHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
                + +D G +R G++  + A +   +       +L+ I  +     D  S     Q 
Sbjct: 151 QGSVWIDIDVGMHRTGIAPNDSATELVRSIQTSDHVRLAGIHVYDGHLHDTDSEKLRRQF 210

Query: 180 -ERFRTLISHYKGIEASLASSSGILL 204
            E  +     ++ I+    +S G L 
Sbjct: 211 DEAVKPFWIWFEDIQR---ASGGQLN 233


>gi|221633687|ref|YP_002522913.1| diaminopimelate decarboxylase [Thermomicrobium roseum DSM 5159]
 gi|221156044|gb|ACM05171.1| diaminopimelate decarboxylase [Thermomicrobium roseum DSM 5159]
          Length = 449

 Score = 40.4 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 52/181 (28%), Gaps = 38/181 (20%)

Query: 40  AYGLGC---------EKIAPALYNAGV------QDFFVTSVEEG-VKL-RLYTPQARIFV 82
           AY  G             A A    G+      +   V  V EG + L R     A   V
Sbjct: 56  AYRHGLESYPGETALVYAAKAFAAVGLLRLLASEGLGVDCVSEGELALARAAGVPAERLV 115

Query: 83  LYGIHPGQEKIIFDTNL----IPVISSVPQLTFYSKLMSCGVSHPYALQVDTG------- 131
           L+G +  +E++ F   L    I V +        +   S G + P  L+++ G       
Sbjct: 116 LHGNNKSEEELRFALELGVGRIVVDNHDELERLVAIARSTGKTVPILLRLNPGVEPHDTH 175

Query: 132 -FNRLG---------LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181
            + R G         +   +A        +     L     H+               + 
Sbjct: 176 AYRRTGQLDSKFGLPIVTGDAEAAVARCLSTPELALLGFHVHIGSQLFDLIPYQRAIEQV 235

Query: 182 F 182
           F
Sbjct: 236 F 236


>gi|146298434|ref|YP_001193025.1| alanine racemase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146152852|gb|ABQ03706.1| alanine racemase domain protein [Flavobacterium johnsoniae UW101]
          Length = 371

 Score = 40.4 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 14/110 (12%)

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHP---GQEKIIF------DTNLIPVISSVPQLTFYS 113
            ++ E  +L          VL    P    +E+ I       DT    ++ ++      +
Sbjct: 71  ATIAEA-EL--AAIHEIPDVLLAYQPVGIKKERWISLLQKYPDTYFSTIVDNLESAKALN 127

Query: 114 K-LMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLII 161
           +      +     L ++TG NR G S+ Q+           K      I 
Sbjct: 128 ETAKENNLKLNVYLDLNTGMNRTGFSISQDWTALIDKIVKLKNLHFEGIH 177


>gi|212702649|ref|ZP_03310777.1| hypothetical protein DESPIG_00677 [Desulfovibrio piger ATCC 29098]
 gi|212673921|gb|EEB34404.1| hypothetical protein DESPIG_00677 [Desulfovibrio piger ATCC 29098]
          Length = 397

 Score = 40.4 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 50/189 (26%), Gaps = 32/189 (16%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEK----IAPALYNAGVQD 59
              L+I++ AL +N   +         R   V+K              I   L   G   
Sbjct: 1   MPELEINMDALAHNLRLVQRQEQAWGFRFLPVLK-------MVASHPDIVDFLRTQGYAC 53

Query: 60  FFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114
           + +  + E   L LY P       RI +     P +   +         S          
Sbjct: 54  YGIADMTE--HL-LYGPEPPDRTGRILI-NLAPPDRADDVVRLFERSSFSCEATFLALDA 109

Query: 115 LMSCGVS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNK-------KLGQLSLIISHLAC 166
                   H   L VD G  R G+ L EA                     ++ I  +L C
Sbjct: 110 AARAAGLRHGALLMVDIGDMREGIPLDEAPALLRAVAAASQRASHGPGAHVAGIGVNLGC 169

Query: 167 --ADDPSSH 173
                P   
Sbjct: 170 LYGTCPDDE 178


>gi|171317786|ref|ZP_02906967.1| alanine racemase domain protein [Burkholderia ambifaria MEX-5]
 gi|171097070|gb|EDT41925.1| alanine racemase domain protein [Burkholderia ambifaria MEX-5]
          Length = 376

 Score = 40.4 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 30/180 (16%)

Query: 11  IDLTALKNNWHSMNAL-----------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ID+  ++NN   M A                +   VV  +A      +IA     AG Q 
Sbjct: 13  IDVDRMRNNIARMQAHLDALGVKFRPHVKTTKCQHVV--DA------QIA-----AGAQG 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT--NLIPVISSVPQLTFYSKL 115
             V++++E  +      +  ++ +  I    GQ   +     +L  +  S+      +  
Sbjct: 60  ITVSTLKEAEQFFAAGVRDIVYAVGMIPAKLGQALALRRQGCDLKIIADSLETAHAIAAF 119

Query: 116 -MSCGVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSH 173
               G      ++VD   +R G+   + L      +       L  +++H   + +  +H
Sbjct: 120 GREHGERFDVWIEVDVDGHRSGIRPDDGLLIDVGRALVDGGMALGGVLAHAGSSYEYDTH 179


>gi|188534959|ref|YP_001908756.1| Conserved hypothetical protein YggS [Erwinia tasmaniensis Et1/99]
 gi|188030001|emb|CAO97885.1| Conserved hypothetical protein YggS [Erwinia tasmaniensis Et1/99]
          Length = 237

 Score = 40.4 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 78/243 (32%), Gaps = 53/243 (21%)

Query: 16  LKNNWHSMNALSGNAR-----------TAAVVK---DNAYGLGCEKIAPALYNAGVQDFF 61
           +K+N   +      A              AV K    +A     E+       AG   F 
Sbjct: 4   IKHNLQQVQQRISAAAAQCGRCPQEITLLAVSKTKPASA----IEE----AVAAGQHCFG 55

Query: 62  VTSVEEG---VKLRLYTPQARIFVLYGIHPGQ---EKIIFDT-NLIPVISSVPQLTFYSK 114
              V+EG   ++L L  P     V + I P Q    +++ +  +    +  +      S+
Sbjct: 56  ENYVQEGVDKIQL-LANPD---LVWHFIGPLQSNKSRLVAENFDWCHTVDRLRIAERLSQ 111

Query: 115 LMSCGVS---HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                +        + +    ++ G+ L E              +L  ++   A      
Sbjct: 112 QRPDPLPPLNVLIQINISAEQSKSGIMLAELPALAQQIAALPRLKLRGLM---AIPAPQD 168

Query: 172 SHVNS----VQL-ERFRTLISHYKGIEA-SLASS----SGILLGPNYHFQLTRPGISLYG 221
            + +      Q+   F+ L   Y G++  SL  S    + I  G      + R G +++G
Sbjct: 169 DYASQLAVCQQMAAAFKQLQQQYPGVDTLSLGMSDDMDAAIAAGS----NMVRIGTAIFG 224

Query: 222 GTD 224
             D
Sbjct: 225 ARD 227


>gi|317053834|ref|YP_004117859.1| alanine racemase domain-containing protein [Pantoea sp. At-9b]
 gi|316951829|gb|ADU71303.1| alanine racemase domain protein [Pantoea sp. At-9b]
          Length = 423

 Score = 40.4 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 22/161 (13%)

Query: 14  TALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALY-----NAGVQDFFVTSVEE 67
           +AL+NN   +           A         G   ++PA+        G       +  +
Sbjct: 55  SALENNLRQLADFCREQGVMLAA-------HGKTSMSPAILRRAITEGGAWGLSAATPAQ 107

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIF-------DTNLIPVISSVPQLTFYSKLMSCGV 120
              LR +  +        + P   + I        D   +  + S+  +    + +    
Sbjct: 108 VRALRQFGIRNVFLANQLVDPAGIRWIGEWQRQHPDHGFVCYVDSLQGVRLLEQHLGDS- 166

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI 160
                L++     R G  S  +AL+           QL  +
Sbjct: 167 RIAVLLEMSISGGRTGCRSPSDALEIATAIAACPALQLVGV 207


>gi|207721615|ref|YP_002252054.1| alanine racemase [Ralstonia solanacearum MolK2]
 gi|206586776|emb|CAQ17361.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
           solanacearum MolK2]
          Length = 376

 Score = 40.4 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLI 100
           E +  A  +AG Q   V++++E  +      +  I    G+ P +            +L 
Sbjct: 46  EPVVRAQLDAGAQGITVSTLKEAEQFFAAGIR-DIVYAVGMAPTRLPQALALRRRGCDLK 104

Query: 101 PVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLS 158
            V  SV      +   S  G +    ++VD   +R G+   +           +   +L 
Sbjct: 105 IVADSVACAQAIAAFGSAHGEAFEVWIEVDVDGHRSGIVPDDDRLISVGRVLAEGGMRLG 164

Query: 159 LIISHLACADD 169
            +++H   + +
Sbjct: 165 GVLAHAGSSYE 175


>gi|158421957|ref|YP_001523249.1| ornithine decarboxylase [Azorhizobium caulinodans ORS 571]
 gi|158328846|dbj|BAF86331.1| ornithine decarboxylase [Azorhizobium caulinodans ORS 571]
          Length = 376

 Score = 40.4 bits (94), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 32/184 (17%)

Query: 4   NEFLR--------LKIDLTALKNNWHSMNALSGNARTAAVVKDN--AYGLGCEKIAPALY 53
            EFLR        + +DL  ++ N+ +      + R    VK N  A       I  AL 
Sbjct: 6   REFLRNRREDGPCVVVDLDVVRANYTAFARALPDTRVFYAVKANPDA------AILKALA 59

Query: 54  NAGVQDFFVTSVEE---GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVP 107
             G   F   SV+E    +                    +  I     +   +  +    
Sbjct: 60  ELG-SCFDCASVQEIEMALF---AGATPDRISFGNTIKKERDIERAYKIGVRLFAVDCYE 115

Query: 108 QLTFYSKLMSCGVSHPYALQVDTG----FNR-LGLSLQEALDFTHNSFNKKLGQLSLIIS 162
           ++   +++          L    G     +R  G   + A D   ++F   L     +  
Sbjct: 116 EVEKIARVAPGARVFCRILCDGAGAEWPLSRKFGCVPEMAPDVLEHAFRLGLS-PYGVSF 174

Query: 163 HLAC 166
           H+  
Sbjct: 175 HVGS 178


>gi|198424387|ref|XP_002127262.1| PREDICTED: similar to LOC571260 protein [Ciona intestinalis]
          Length = 376

 Score = 40.4 bits (94), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQLTFYSKL- 115
           V+++ E   L     +  I+  Y I P +     +      + +  + +V  L    +  
Sbjct: 63  VSTLVEADLLAENGFENVIYA-YPISPHKTPKCAELSEKMKSFVVFVDNVAALKALEQWK 121

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACAD----- 168
           +    +    ++VDTG  R G+ ++  +A+              S + SH   +      
Sbjct: 122 LKDNKNWQVLVEVDTGAGRSGVQIESLDAVSLIKEVVKCGNVTFSGLYSHCGHSYKCKNA 181

Query: 169 DPSSHVNSVQLERFRTLISHYKG 191
           +    V  +   +  TL+   K 
Sbjct: 182 EEIKEVGKMATNKMLTLVDELKK 204


>gi|256823045|ref|YP_003147008.1| bifunctional aspartate kinase/diaminopimelate decarboxylase protein
           [Kangiella koreensis DSM 16069]
 gi|256796584|gb|ACV27240.1| aspartate kinase [Kangiella koreensis DSM 16069]
          Length = 853

 Score = 40.4 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 62/171 (36%), Gaps = 29/171 (16%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71
           +L A+  N  ++ ++S   +    VK N       ++    Y  G+  F   S+ E  ++
Sbjct: 502 NLAAVAENIKNLQSISAVDQIFFAVKAN--NH--PQVLTTAYEQGI-GFETVSIFEVERI 556

Query: 72  RLYTP---QARIFVLYGIHP-----GQEKIIFDTNLIPVISSVPQLTFYSKLMSC----- 118
           +   P     RIF      P      + +   D  ++  + S   L +++K  +      
Sbjct: 557 KELFPAIDTNRIF----FTPNFASHNEYQKALDYGVMLSLDSSYPLKYWAKTFANKTIFL 612

Query: 119 ------GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
                 G  H   ++     ++ G+ +QE  +       +   ++  + +H
Sbjct: 613 RIDPNVGKGHHENVRTAGATSKFGIPIQELEELLP-IIKEHNIKVLGLHAH 662


>gi|298293889|ref|YP_003695828.1| Orn/DAP/Arg decarboxylase 2 [Starkeya novella DSM 506]
 gi|296930400|gb|ADH91209.1| Orn/DAP/Arg decarboxylase 2 [Starkeya novella DSM 506]
          Length = 376

 Score = 40.4 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 37/222 (16%)

Query: 4   NEFLR--------LKIDLTALKNNWHSMNALSGNARTAAVVKDN---AYGLGCEKIAPAL 52
            EFLR        + +DL  +++N+ +      + R    VK N   A       I  AL
Sbjct: 6   REFLRNRREDGPCVVVDLDVVRSNYAAFARALPDTRVFYAVKANPDPA-------ILSAL 58

Query: 53  YNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQL 109
              G   F   SV E +                    +  +     L   +  +    ++
Sbjct: 59  AELG-SCFDCASVNEILMALAAGATPDRISFGNTIKKERDVARAFELGVRLFAVDCEAEV 117

Query: 110 TFYSKLMSCGVSHPYALQVDTG----FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHL 164
              +++ +        L    G     +R  G   + A+D   ++    L +   +  H+
Sbjct: 118 EKIARVAAGAKVFCRILCDGAGAEWPLSRKFGCVPEMAVDVLEHAHRLGL-EAYGVSFHV 176

Query: 165 ACAD-----DPSSHVNSVQLERFRTLISHYKGIEASLASSSG 201
                      S+  ++ Q+  FR  +   +G   SL +  G
Sbjct: 177 GSQQKNVEAWDSALASASQI--FRECME--RGFSLSLVNLGG 214


>gi|261419751|ref|YP_003253433.1| thiamine-phosphate pyrophosphorylase [Geobacillus sp. Y412MC61]
 gi|297530289|ref|YP_003671564.1| thiamine-phosphate pyrophosphorylase [Geobacillus sp. C56-T3]
 gi|319766566|ref|YP_004132067.1| thiamine-phosphate pyrophosphorylase [Geobacillus sp. Y412MC52]
 gi|261376208|gb|ACX78951.1| thiamine-phosphate pyrophosphorylase [Geobacillus sp. Y412MC61]
 gi|297253541|gb|ADI26987.1| thiamine-phosphate pyrophosphorylase [Geobacillus sp. C56-T3]
 gi|317111432|gb|ADU93924.1| thiamine-phosphate pyrophosphorylase [Geobacillus sp. Y412MC52]
          Length = 221

 Score = 40.4 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 22/93 (23%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT---------SVEEG--- 68
             +    G+ +   V   +A     E+ A A   AG     V            +E    
Sbjct: 103 RRVREKIGD-KILGV---SA--HNVEE-AMAAVEAGADYLGVGPIYPTSSKEDAKEAQGP 155

Query: 69  ---VKLRLYTPQARIFVLYGIHPGQEKIIFDTN 98
               +LR       I  + GI     K + +  
Sbjct: 156 DVLRRLREAGITIPIVAIGGITAANAKTVVEAG 188


>gi|149178497|ref|ZP_01857086.1| alanine racemase-like protein [Planctomyces maris DSM 8797]
 gi|148842710|gb|EDL57084.1| alanine racemase-like protein [Planctomyces maris DSM 8797]
          Length = 366

 Score = 40.4 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 68/219 (31%), Gaps = 39/219 (17%)

Query: 9   LKIDLTALKNNWHSM--------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L IDL  ++ N   M             + +                IA  L   G    
Sbjct: 18  LCIDLDIMEANIQKMSDYILSRGKTWRPHEKC----------HKTPAIA--LAQMGAGAI 65

Query: 61  FVTS--VEEGVKLRLYTPQARIFVLYGI-----HPGQEKIIFDTNLIPVISSVPQLTFYS 113
            VT   V E   +     +  I +   I           +      I       Q+   +
Sbjct: 66  GVTCAKVSEAEVMAAAGVK-DILIANMIVGKTKWERVVSLCRHARPIIACDHYAQIEPLA 124

Query: 114 KL-MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLII---SHLACAD 168
           K+    GV      +V+ G NR+G    Q+ LD        +  +L+ I+    HL    
Sbjct: 125 KMCADAGVVCRMMPEVNIGLNRVGSRPGQDTLDLAMAIDKLEGVELAGIMGYEGHLLQIQ 184

Query: 169 DPSSHVNSVQLERFRTLIS-----HYKGIEASLASSSGI 202
           D +     + +E  RTL+        KGI   + S+ G 
Sbjct: 185 DQAEKEEKI-IEAMRTLVGCKTTIEAKGIPCEIVSAGGT 222


>gi|308050653|ref|YP_003914219.1| alanine racemase domain protein [Ferrimonas balearica DSM 9799]
 gi|307632843|gb|ADN77145.1| alanine racemase domain protein [Ferrimonas balearica DSM 9799]
          Length = 227

 Score = 40.0 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 72/193 (37%), Gaps = 25/193 (12%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP 101
            ++    Y AG +DF    ++EGV     L+      R   +  +   + + + +     
Sbjct: 40  AEMIREAYLAGARDFGENYLQEGVDKIDALQDLDI--RWHFIGPLQSNKTRPVAERFDW- 96

Query: 102 VISSVPQLTFYSKLMSCGVSHP------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155
            I SV +L    +L     S          + +    ++ G++  +  +           
Sbjct: 97  -IHSVDRLKIAQRLSEQRPSGKAPLNVCIQVNISAEQSKSGVNPAQLPELAAAVAALPGL 155

Query: 156 QLSLIISHLACADDPSSHVNS-VQLER-FRTLISHYKGIEA-SLASS----SGILLGPNY 208
           +L  +++  A   DP     +  Q+++ F  L + + G++  S+  S    + +  G   
Sbjct: 156 RLRGLMAIPAPESDPEKQRQALAQMKQLFDALKAEHPGLDTLSMGMSDDLEAAVAEGST- 214

Query: 209 HFQLTRPGISLYG 221
              + R G +++G
Sbjct: 215 ---MVRIGTAIFG 224


>gi|295695164|ref|YP_003588402.1| alanine racemase domain protein [Bacillus tusciae DSM 2912]
 gi|295410766|gb|ADG05258.1| alanine racemase domain protein [Bacillus tusciae DSM 2912]
          Length = 389

 Score = 40.0 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 11/118 (9%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-----HPGQ 90
           VK         +IA     AG Q   V  + E         +  I V Y +         
Sbjct: 49  VKA----HKTVEIARRQRMAGTQGITVAKLGEAEVFAEAGFR-DITVAYPVISAVKRDRL 103

Query: 91  EKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH 147
             +     +  V   + Q+   ++      V+    L+VDTG  R G+   E      
Sbjct: 104 AALAARARVTTVADDLEQVDLLARMAEERAVTVGLWLKVDTGLYRCGIPTAEEDRAAA 161


>gi|78063401|ref|YP_373309.1| alanine racemase-like [Burkholderia sp. 383]
 gi|77971286|gb|ABB12665.1| Alanine racemase-like protein [Burkholderia sp. 383]
          Length = 359

 Score = 40.0 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT--NLIPV 102
           ++  A   AG Q   V++++E  +   +  +  ++ +  +    GQ   +     +L  V
Sbjct: 30  QVVDAQLAAGAQGITVSTLKEAEQFFAHGIRDIVYAVGMVPAKLGQALALRRQGCDLKLV 89

Query: 103 ISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLI 160
             S+P     ++   + G      ++VD   +R G+    + L     +       L  +
Sbjct: 90  ADSLPAAHAIAEFGRAHGERFDVWIEVDVDGHRSGIPPDADLLIDVGRALFDGGMMLGGV 149

Query: 161 ISHLACADDPSSH 173
           ++H   + +  + 
Sbjct: 150 LAHAGSSYEYDTP 162


>gi|317401723|gb|EFV82343.1| metal-activated pyridoxal enzyme [Achromobacter xylosoxidans C54]
          Length = 379

 Score = 40.0 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 18/163 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTA----AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           L +DL A + N  +M A +     A    A  K       C +IA      G +      
Sbjct: 29  LVLDLAAFEANLRAMQAWADRHEVALRPHA--KA----HKCPEIARRQLALGARGICCQK 82

Query: 65  VEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFD----TNLIPVISSVPQLTFYSKL-MSC 118
           V E V          I +    + P + +++        L   + +   L   S+   + 
Sbjct: 83  VSEAVPFVAAGIT-DIHISNEVVGPAKLRLLAQLARAAKLSVCVDNAANLARISQAMAAA 141

Query: 119 GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLI 160
           G      ++VD G  R G+S     L     + +        +
Sbjct: 142 GAEIDVLVEVDVGQGRCGVSDDATVLALAQQARDLPGVTFVGL 184


>gi|206562454|ref|YP_002233217.1| putative alanine racemase [Burkholderia cenocepacia J2315]
 gi|198038494|emb|CAR54452.1| putative alanine racemase [Burkholderia cenocepacia J2315]
          Length = 376

 Score = 40.0 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 53  YNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT--NLIPVISSVPQ 108
             AG Q   V++++E  +   +  +  ++ +  +    GQ   +     +L  V  S+P 
Sbjct: 53  IAAGAQGITVSTLKEAEQFFAHGIRDIVYAVGMVPAKLGQALALRRQGCDLKIVADSLPA 112

Query: 109 LTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLAC 166
               +      G      ++VD   +R G+  + + L     +       L  +++H   
Sbjct: 113 AQAIAAFGREHGERFDVWIEVDVDGHRSGIPPEADLLIDVGRALTGGGTLLGGVLAHAGS 172

Query: 167 ADDPSSH 173
           + +  + 
Sbjct: 173 SYEHDTP 179


>gi|149907666|ref|ZP_01896413.1| Predicted amino acid racemase [Moritella sp. PE36]
 gi|149809336|gb|EDM69265.1| Predicted amino acid racemase [Moritella sp. PE36]
          Length = 305

 Score = 40.0 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 12/188 (6%)

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQVD 129
           +R         ++      Q + +     I + S +  +   S       + H   + V+
Sbjct: 13  IRQAGISLPTMLIRTPMLSQAESVVKNCNISLNSEIAVIEQLSLVASQTNIIHGIIIMVE 72

Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLERFRTLISH 188
            G  R G+     L F  N  N     +  I ++LAC    S   + + QL      +  
Sbjct: 73  LGDLREGVMPNNLLAFIGNIINLPNIVIKGIGTNLACRYGISPDNDKMSQLSALADEVEQ 132

Query: 189 YKGIE---ASLASSSGILLG----PNYHFQLTRPGISLYGGTDKINKSHPMQT---VVTA 238
              I+    S  +S+ I        +      R G +++ G + + +          +T 
Sbjct: 133 AFSIQLDIISGGNSASINWALNHEASSRINNLRIGEAIFLGCEPLYQEPIEGLFTDAITL 192

Query: 239 EARIILIR 246
            A +I  +
Sbjct: 193 TAEVIESK 200


>gi|126668086|ref|ZP_01739049.1| putative D-b-hydroxy-aspartate aldolase [Marinobacter sp. ELB17]
 gi|126627477|gb|EAZ98111.1| putative D-b-hydroxy-aspartate aldolase [Marinobacter sp. ELB17]
          Length = 387

 Score = 40.0 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 52/190 (27%), Gaps = 46/190 (24%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYN--A 55
           L +DL AL+ N   M   +         K      G              +A  L     
Sbjct: 32  LILDLDALERNIKKMGDYA---------KA----HGMRHRVHGKMHKSVDVAR-LQEDLG 77

Query: 56  GVQDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDT-----NLIPVISSVP 107
           G     V      E         +  + V   +  P +   +         +I  +  V 
Sbjct: 78  GA--IGVCCQKPSEAEVFARAGIK-DVLVSNQVRDPLKIDRLAQLPKYGGRIIVCVDDVD 134

Query: 108 QLTFYS-KLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI----- 160
            ++  S             +++D G  R G+ S ++ +              + I     
Sbjct: 135 NVSDLSMACQKHSTELHCFVEIDCGAGRCGVNSTEDVVTIARAIDAAPNLTFTGIQAYQG 194

Query: 161 -ISHLACADD 169
            + H+A  D+
Sbjct: 195 AMQHVASYDE 204


>gi|121602552|ref|YP_989352.1| pyridoxal-dependent decarboxylase [Bartonella bacilliformis KC583]
 gi|120614729|gb|ABM45330.1| pyridoxal-dependent decarboxylase [Bartonella bacilliformis KC583]
          Length = 377

 Score = 40.0 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 52/174 (29%), Gaps = 16/174 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDF 60
           H +E   L +DL  +  N+ +       +R    VK N A      +I   L + G   F
Sbjct: 13  HRSEGPCLVVDLDIVHENYLNFEKALPQSRIFYAVKANPA-----PEILRLLVSLG-SSF 66

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
              SV E   +      A           +  I     L   + +V  +    K+     
Sbjct: 67  DAASVAEIKMILESGATAERISFGNTIKKERDIASAHALGVSLYAVDCIEEVEKVARAAP 126

Query: 121 SHPYALQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
                 +V T         +R  G     A+D    +    L Q   +  H+  
Sbjct: 127 GARVFCRVLTNGEGAEWPLSRKFGCVPAMAVDVLCRAHQLGL-QAHGVSFHVGS 179


>gi|326387669|ref|ZP_08209275.1| Orn/DAP/Arg decarboxylase 2 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207715|gb|EGD58526.1| Orn/DAP/Arg decarboxylase 2 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 402

 Score = 40.0 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 24/156 (15%)

Query: 50  PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVP 107
             L++AGV  + V SV E   +R   P+A +  ++ +       +   D  +     S+ 
Sbjct: 57  RVLWDAGVTHYDVASVGEARLVRGLLPEATLCFMHPVKAPSAILEAYRDHGVRT--FSLD 114

Query: 108 QLTFYSKLMSCGVSHP-----------YALQVDTGF------NRLGLSLQEALDFTHNSF 150
            L    K+                     L+V + +      ++ G  L +A +    + 
Sbjct: 115 SLEELEKIRLATTEANDGVEPTDLTLCVRLRVSSEYSELSLASKFGCELSDAAELLQAT- 173

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
            ++L     I  H+              LE+ R  I
Sbjct: 174 -RQLADCLGICFHVGSQAMSPHAYVQA-LEKARAAI 207


>gi|319784209|ref|YP_004143685.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170097|gb|ADV13635.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 353

 Score = 40.0 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 78/258 (30%), Gaps = 25/258 (9%)

Query: 91  EKIIFDTNLIPVISSVPQLTFYSKLMS----CGVSHPYALQVDTGFNRLGL-SLQEALDF 145
           E+++     + +  +   +     L +     G   P  ++ DTG  R G+ S  EA+  
Sbjct: 94  ERLLALHGRVTLSVTADSMETLEGLAATFTDAGHRLPVLVECDTGMGRCGVQSADEAVAL 153

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG 205
                         +++         +      L   +  ++   G+     SS G    
Sbjct: 154 ARQIDRAGGLAFGGLMT---YPAAGKAAEAEAWLADAKQALAA-SGLACERISSGGTPDM 209

Query: 206 PNYHFQLT----RPGISLYGGTDKINKSHP--MQTVVTAEARIILIRKALAGELVSYGGQ 259
                       RPG  +Y    ++ K         +T  + ++                
Sbjct: 210 WRSSDTSVVTEYRPGTYIYLDRYQVAKGVGTLDDCALTVLSTVVS---HPTATRAILDAG 266

Query: 260 KKLTRDSLIAVAAIGYADGYPLT-LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318
            K      + +A  G   G P   ++GL  EH      G      G  V ++     D  
Sbjct: 267 SKALSSDTLGLADFGELPGVPGARVTGLSEEHGTVTLSGDGKLRIGERVRVVP----DHC 322

Query: 319 MF--DITDSLSIEVGDYI 334
               ++ + +++  GD +
Sbjct: 323 CVVTNLFNEVNLVDGDKV 340


>gi|56420046|ref|YP_147364.1| thiamine-phosphate pyrophosphorylase [Geobacillus kaustophilus
           HTA426]
 gi|81819737|sp|Q5KZU0|THIE_GEOKA RecName: Full=Thiamine-phosphate pyrophosphorylase; Short=TMP
           pyrophosphorylase; Short=TMP-PPase; AltName:
           Full=Thiamine-phosphate synthase
 gi|56379888|dbj|BAD75796.1| thiamine-phosphate diphosphorylase [Geobacillus kaustophilus
           HTA426]
          Length = 221

 Score = 40.0 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 22/93 (23%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT---------SVEEG--- 68
             +    G+ +   V   +A     E+ A A   AG     V            +E    
Sbjct: 103 RRVREKIGD-KILGV---SA--HNVEE-AMAAVEAGADYLGVGPIYPTSSKEDAKEAQGP 155

Query: 69  ---VKLRLYTPQARIFVLYGIHPGQEKIIFDTN 98
               +LR       I  + GI     K + +  
Sbjct: 156 DVLRRLREAGITIPIVAIGGITAANAKTVVEAG 188


>gi|207722229|ref|YP_002252665.1| siderophore synthesis decarboxylase protein [Ralstonia solanacearum
           MolK2]
 gi|207728412|ref|YP_002256806.1| siderophore synthesis decarboxylase 'partial sequence n terminus)
           protein [Ralstonia solanacearum MolK2]
 gi|206587405|emb|CAQ17987.1| putative siderophore synthesis decarboxylase protein [Ralstonia
           solanacearum MolK2]
 gi|206591658|emb|CAQ57270.1| probable siderophore synthesis decarboxylase 'partial sequence n
           terminus) protein [Ralstonia solanacearum MolK2]
          Length = 364

 Score = 40.0 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 58/188 (30%), Gaps = 32/188 (17%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           DL  L+     ++A L         +K N+       +  A  +  V  + V S+ E  +
Sbjct: 23  DLDHLRERAGRLSAMLPPGCELFYAIKANS----DAPVL-AALDGAVAGYEVASLGEVAR 77

Query: 71  LRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPV-ISSVPQLTFYSKLM-SCGVSHPYAL 126
            R     ARI V  G      + +   +  +  + + S  QL     +    G      L
Sbjct: 78  AREVGAHARI-VFGGPGKTDAELQCALERGVELIHVESELQLRRLDAVACRMGRRARVLL 136

Query: 127 QV-------DTGFNR-------------LGLSLQEALDFTHNSFNKKLGQLSLIISH-LA 165
           +V       D+   R              G+      D    +      ++  +  H L+
Sbjct: 137 RVNPNPLSADSAGKRPQGTLTMGGQPTQFGIEEDAVPDLIRLARGLAGVKVVGLHLHALS 196

Query: 166 CADDPSSH 173
              D  SH
Sbjct: 197 NNLDADSH 204


>gi|13472621|ref|NP_104188.1| ornithine decarboxylase [Mesorhizobium loti MAFF303099]
 gi|14023367|dbj|BAB49974.1| ornithine decarboxylase [Mesorhizobium loti MAFF303099]
          Length = 377

 Score = 40.0 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 24/198 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ +      +++    VK N A      +I   L   G   F   SV E
Sbjct: 20  LVVDLDVVRDNFRAFEKALPDSKIYYAVKANPA-----PEILRLLAAMG-SSFDTASVAE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPY 124
                     A           +  I     L   +  +  V ++   +++         
Sbjct: 74  VEMAMDAGAPADRISFGNTIKKERDIARAYQLGIRLFAVDCVEEVEKIARVAPGARVFCR 133

Query: 125 ALQVDTG----FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            L    G     +R  G     A+D   ++    L     +  H+              L
Sbjct: 134 VLTDGEGAEWPLSRKFGCVPAMAVDVLRHAKGLGLDA-YGVSFHVGSQQTD--------L 184

Query: 180 ERFRTLISHYKGIEASLA 197
             +   ++  K + A+LA
Sbjct: 185 TAWDRALADAKKVFATLA 202


>gi|170719558|ref|YP_001747246.1| alanine racemase domain-containing protein [Pseudomonas putida
           W619]
 gi|169757561|gb|ACA70877.1| alanine racemase domain protein [Pseudomonas putida W619]
          Length = 228

 Score = 40.0 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 60/194 (30%), Gaps = 38/194 (19%)

Query: 50  PALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPV 102
             L+ AGV D     ++E +     LR         +      I   + K I +      
Sbjct: 44  RELHAAGVCDVGENYLQEALAKQDDLRDL-----PLIWHFIGPIQSNKTKAIAEHFDW-- 96

Query: 103 ISSVPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ 156
           + SV +L    +L          ++    + V    ++ G + ++     +        +
Sbjct: 97  VHSVDRLKIAQRLSEQRPKDLPPLNICLQVNVSGEESKSGCAPEDLPALANAVAVLPNLR 156

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH------- 209
           L  ++       +PS    + Q   F +L    +G+   L      L     H       
Sbjct: 157 LRGLM----AIPEPSED-RAEQEAAFASLRQLQEGLNLGLD----TLSMGMSHDLEAAIA 207

Query: 210 --FQLTRPGISLYG 221
                 R G +L+G
Sbjct: 208 QGATWVRIGTALFG 221


>gi|221133769|ref|ZP_03560074.1| hypothetical protein GHTCC_02484 [Glaciecola sp. HTCC2999]
          Length = 235

 Score = 40.0 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 31/199 (15%)

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ------EKIIFDTNLIPVISS 105
            Y+AG + F    V+EGV+           V + I P Q          FD        S
Sbjct: 47  AYDAGQRHFGENYVQEGVEKVHALAHLSDLVWHFIGPIQSNKSKFIAECFDW-----CHS 101

Query: 106 VPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL 159
           + +L    +L +        +     + +D    + G++ +E               L  
Sbjct: 102 IDRLKIAQRLNNQRAVDQKPLQVCIQVNIDNEVTKAGITPEELPAIASQIAQMPQLTLRG 161

Query: 160 IISHLACADDPSSHVNSVQLERFRTLISHYKGIEA--------SLASSSGILLGPNYHFQ 211
           I+     A   ++ + + Q + F  L   Y+ ++         S+  S  I         
Sbjct: 162 IM-----AIPKATSIITEQRDSFERLAHLYQALQTNFPDVDILSMGMSGDIGPAIEAGST 216

Query: 212 LTRPGISLYGG-TDKINKS 229
           + R G  ++G  T    K 
Sbjct: 217 MVRVGTGIFGQRTPSPKKD 235


>gi|294811666|ref|ZP_06770309.1| Predicted amino acid aldolase or racemase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440150|ref|ZP_08214884.1| hypothetical protein SclaA2_03744 [Streptomyces clavuligerus ATCC
           27064]
 gi|294324265|gb|EFG05908.1| Predicted amino acid aldolase or racemase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 400

 Score = 40.0 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 63/220 (28%), Gaps = 60/220 (27%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA------PALYN-------- 54
             +DL A   N   +   +G                  ++A       AL          
Sbjct: 23  AVVDLDAFDANADDLVRRAGGKP--------------VRVASKSVRCRALLERVLEKDGF 68

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD--------TNLIPVISSV 106
           AGV  F   ++ E V L          VL            +          +  ++  V
Sbjct: 69  AGVMAF---TLPEAVWLARSGFGD---VLLAYPSADRAAFAELTGDPRSAAAVTVMVDDV 122

Query: 107 PQLTFYSKLMSCGV-SHPYALQVDTGFNRLG------------LSLQEALDFTHNSFNKK 153
            QL       S G       L++DT F  LG             + +   +   +   + 
Sbjct: 123 AQLDLIDAARSGGREEVRVCLELDTAFRLLGGRIRVGARRSPLAAPEHLAELARSVVRRP 182

Query: 154 LGQLSLII---SHLACADD--PSSHVNSVQLERFRTLISH 188
             +L  I+   +H+A   D  P + + S  +  F+ +   
Sbjct: 183 GFRLVGIMAYEAHIAGVPDRAPGAPLLSRAVRAFQRVSRA 222


>gi|56460862|ref|YP_156143.1| amino acid aldolase or racemase [Idiomarina loihiensis L2TR]
 gi|56179872|gb|AAV82594.1| Predicted amino acid aldolase or racemase [Idiomarina loihiensis
           L2TR]
          Length = 375

 Score = 40.0 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 83/269 (30%), Gaps = 54/269 (20%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----EKIAPALYNAG------- 56
           L ID   LK+N + +     +             LG       K    L  AG       
Sbjct: 16  LLIDEAKLKSNINYLKQRVES-------------LGSHLRPHLKTLRTLEAAGYLLDSKS 62

Query: 57  --VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQL 109
                  V+++ E            +    GI P + K +        NL  ++ ++ Q 
Sbjct: 63  APAT---VSTLAEAEAYAKAGYT-DLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQA 118

Query: 110 TF-YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH----L 164
                     G      +++D+  +R G+   ++   T      +    + +++H     
Sbjct: 119 QAVVDYAAEFGQDFSVFIEIDSDDHRGGIKPSDSKLLTIAKTLGE--HFTGLMTHAGGSY 176

Query: 165 ACADDPSSHVNSVQ-LERFRTLISHYKGIEASLASSSGILLGPNYHF-----QLTRPGIS 218
           AC  +      + Q  +  R   ++ +      A +S +   P  HF      ++     
Sbjct: 177 ACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITS-VGSTPTAHFGEDFSDISEVRAG 235

Query: 219 LYGGTDKINKSHP----MQTVVTAEARII 243
           +Y   D + K+          ++    +I
Sbjct: 236 VYTTFDLVMKNIGVCDFSHIAMSVVTTVI 264


>gi|330960246|gb|EGH60506.1| hypothetical protein PMA4326_16961 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 367

 Score = 40.0 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 8/149 (5%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----L 99
              +  A   AG     V++++E         +  +F    I PG+    F        L
Sbjct: 36  SLPVIQAQIAAGATGVTVSTLKEAEHCFAEGIE-DVFYAVAIAPGKLDQAFRLRRNGCRL 94

Query: 100 IPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQL 157
             +  SV                    +++D   +R GL++++ AL     +      QL
Sbjct: 95  SILTDSVVAAQAIVAFGQQHDERFEVWIEIDCDGHRSGLAVEDSALIDVAKTLVDGGMQL 154

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLI 186
             +++H   + D  +      L     ++
Sbjct: 155 RGVMTHAGSSYDLDTPEALQALAEQERVL 183


>gi|89055095|ref|YP_510546.1| D-3-hydroxyaspartate aldolase [Jannaschia sp. CCS1]
 gi|88864644|gb|ABD55521.1| D-3-hydroxyaspartate aldolase [Jannaschia sp. CCS1]
          Length = 387

 Score = 40.0 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 59/211 (27%), Gaps = 47/211 (22%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYNA-- 55
           L +DL AL+ N   M   +                G              +A  L     
Sbjct: 32  LVLDLDALERNIKKMGDYARE-------------HGMRHRVHGKMHKSVDVAK-LQEELG 77

Query: 56  GVQDFFVTS--VEEGVKLRLYTPQARIFVLY-GIHPGQEKIIFD-----TNLIPVISSVP 107
           G     V    V E         +  + V      P +   +         ++  +    
Sbjct: 78  GA--CGVCCQKVSEAEVFARGGIK-DVMVSNQVTDPQKIDRLARMPKFGARVLCCVDDPA 134

Query: 108 QLTFYSKLM-SCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI----- 160
            +   S      G      +++D G  R G+ + QE ++        +  + + I     
Sbjct: 135 NVADLSAAAVKHGTQIEALVEIDCGAGRCGVTTTQEVVNIAKMIDAAEGLKFAGIQAYQG 194

Query: 161 -ISHLACADDPSSHVNSVQLERFRTLISHYK 190
            + HL  + D  +    V ++     I+  K
Sbjct: 195 AMQHL-DSYDERASKTQVAIDMVEDAIAGLK 224


>gi|254784476|ref|YP_003071904.1| pyridoxal phosphate enzyme, YggS family [Teredinibacter turnerae
           T7901]
 gi|237687467|gb|ACR14731.1| pyridoxal phosphate enzyme, YggS family [Teredinibacter turnerae
           T7901]
          Length = 228

 Score = 40.0 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 17/185 (9%)

Query: 50  PALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS 105
            A Y+AG++DF    ++E V+    L    P+AR   +  I   + + I +      + S
Sbjct: 44  QAAYDAGLRDFGENYLQEAVEKIAVL--AMPEARWHFIGPIQSNKTRAIAEH--FQWVHS 99

Query: 106 VPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL 159
           V +L    +L          +     + +D    + G+++ E              QL  
Sbjct: 100 VDRLKIAQRLSEQRSPALPPLQICLQVNIDNEDTKSGVNVTELETLALAVAELPHLQLRG 159

Query: 160 IISHLACADDPSS-HVNSVQ--LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPG 216
           +++  A      +     +Q   ER +           S+  S  +           R G
Sbjct: 160 LMTIPATQYTADNSPFVRLQTLFERLKKHPQLANMDTLSMGMSGDMEDAIAAGSTQVRIG 219

Query: 217 ISLYG 221
            +L+G
Sbjct: 220 TALFG 224


>gi|291615213|ref|YP_003525370.1| alanine racemase domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291585325|gb|ADE12983.1| alanine racemase domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 226

 Score = 40.0 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 62/204 (30%), Gaps = 47/204 (23%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIH-----PGQEKIIFD 96
            +     Y  G   F    ++E ++    LR          L           + + I +
Sbjct: 40  AEAVREAYRGGQAAFGENYLQEALEKIAALRD-------LPLEWHFIGPIQSNKTRAIAE 92

Query: 97  TNLIPVISSVPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150
                 + SV +L    +L +        ++    + V    ++ G++  E      +  
Sbjct: 93  NFAW--VHSVDRLKIAERLSAQRPSQLPPLNICLQVNVSGEESKSGVAPAEVAQLAQDVA 150

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSG----ILLGP 206
           +    +L  +++  + A D        Q   F  + +  K +     +S G     L   
Sbjct: 151 HLPNLRLRGLMTIPSPAAD-----QEQQRAPFAQMRALLKQL-----NSQGMSLDTLSMG 200

Query: 207 NYH---------FQLTRPGISLYG 221
             H           + R G +++G
Sbjct: 201 MTHDFPAAIMEGATIVRVGTAIFG 224


>gi|294101735|ref|YP_003553593.1| alanine racemase domain protein [Aminobacterium colombiense DSM
           12261]
 gi|293616715|gb|ADE56869.1| alanine racemase domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 358

 Score = 40.0 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 102/353 (28%), Gaps = 46/353 (13%)

Query: 6   FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEK---IAPALYNAGVQDF 60
           + RL +    +  N   + +L    N     V K      G      I   +  +G +  
Sbjct: 4   YPRLIVFCDKIAYNAAQIVSLCRQWNIGVYGVAK------GACAQGDIVHVMVESGCEGI 57

Query: 61  FVTSVEEGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSC 118
             + ++   +L+        + +L      +   + +     V+S    +     + +  
Sbjct: 58  ADSRIKNLYRLKKEMRLSVPVMMLRPPMMSEIPEVVEYGDSSVVSMSETIRALDHESVFQ 117

Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS-V 177
              H   L +D G  R G+   E           +  +   +  +  C       +    
Sbjct: 118 KKDHLVLLMIDLGDLREGIWPDELEQIGKILKGCQRVRCMGVGVNFGCFGGVRPSMEKLE 177

Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLG--PNYHFQLTRPG-ISLYGGTDKINKS 229
           +L      +    G    +      SS  ++       +    R G   L G      + 
Sbjct: 178 ELGVLEKELESLLGYPLKVCSGGSTSSLALIEDGTMPSNVNALRIGEAILLGTDSSGGRP 237

Query: 230 HPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287
            P   Q  V  E  II +++  +  L              IA  A G     P  +    
Sbjct: 238 LPFLKQQTVILETEIIEVKRKPSFPLGE------------IAADAFG---NIPSFVDRGV 282

Query: 288 SEHSPSVFLGGKGFIKG-----YMVPILGKITMDMTMFDITD-SLSIEVGDYI 334
              + S        I+G       + ILG  + D  + D      ++ VGD +
Sbjct: 283 RLRAISAIGKQDARIEGLSPLEEGIEILGA-SSDHMVLDAEKYGRTLHVGDKV 334


>gi|242238227|ref|YP_002986408.1| alanine racemase domain protein [Dickeya dadantii Ech703]
 gi|242130284|gb|ACS84586.1| alanine racemase domain protein [Dickeya dadantii Ech703]
          Length = 241

 Score = 40.0 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 53/206 (25%)

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI---------PV 102
              AG + F    V+EGV+        +I          + I  + + I         PV
Sbjct: 48  AIAAGQRAFGENYVQEGVE--------KIL---YFRQTHQDIALEWHFIGPLQSNKSRPV 96

Query: 103 ISSVPQLTFYSKLM----------SCGVSHPYALQVDTGF--NRLGLSLQEALDFTHNSF 150
                      +L                    LQ++     ++ G+   E      +  
Sbjct: 97  AEHFDWCHTIDRLRIAQRLSEQRPDTLPPLNVLLQINISREESKSGILPDELPALAASVA 156

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS------------ 198
                +L  +++    A +        QL  FR +   ++ ++A  A             
Sbjct: 157 ALPNLRLRGLMA--IPAPEADH---QRQLAVFRRMYDLFQQLQADHAHVDTLSMGMTDDM 211

Query: 199 SSGILLGPNYHFQLTRPGISLYGGTD 224
           ++ I  G      L R G +++G  D
Sbjct: 212 AAAIEAGST----LVRIGTAIFGARD 233


>gi|300310473|ref|YP_003774565.1| amino acid aldolase or racemase [Herbaspirillum seropedicae SmR1]
 gi|300073258|gb|ADJ62657.1| amino acid aldolase or racemase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 376

 Score = 40.0 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT--NLIPV 102
           ++  A   AG     V++++E  +         ++ +       GQ   +     NL  V
Sbjct: 47  EVVQAQLQAGASGITVSTLKEAEQFFAAGISDIVYAVGMAPTKLGQALALRRQGCNLKIV 106

Query: 103 ISSVPQLTFYSKLMSCGVS-HPYALQVDTGFNRLGLSLQEALDFTH-NSFNKKLGQLSLI 160
             SV                    +++D   +R G++ ++A      N  +    ++  +
Sbjct: 107 ADSVVCAEAIVAFGQAQEECFDVWIEIDVDGHRSGIAPEDATLLAVGNVLHAGGMRIGGV 166

Query: 161 ISHLACADDPSSH 173
           I+H   + D  + 
Sbjct: 167 IAHAGSSYDYDND 179


>gi|90577958|ref|ZP_01233769.1| threonine aldolase, low-specificity [Vibrio angustum S14]
 gi|90441044|gb|EAS66224.1| threonine aldolase, low-specificity [Vibrio angustum S14]
          Length = 368

 Score = 40.0 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 44/173 (25%), Gaps = 35/173 (20%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +D   +KNN H M             +       K          IA    +AG Q  
Sbjct: 11  LIVDFDKMKNNIHEMQQRIDALQLNLRPHT------KA----HKSPTIAKMQIDAGAQGI 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-----------DTNLIPVI-SSVPQ 108
               + E   +        I +     P   K              D   I VI      
Sbjct: 61  CTAKLGEAEVMAAGGIN-DILI---TTPIAGKNKIQRLVKLYQQYPDYRFIQVIDHKQHI 116

Query: 109 LTFYSKLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLI 160
           +         G+     ++V++G  R G+ +  + +                +
Sbjct: 117 IDISEAATDAGICIELMIEVESGQQRCGVEIGDDLISLIETINCSDGVSYVGL 169


>gi|83747285|ref|ZP_00944327.1| Alanine racemase [Ralstonia solanacearum UW551]
 gi|207744276|ref|YP_002260668.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
           solanacearum IPO1609]
 gi|83726109|gb|EAP73245.1| Alanine racemase [Ralstonia solanacearum UW551]
 gi|206595681|emb|CAQ62608.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
           solanacearum IPO1609]
          Length = 376

 Score = 40.0 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLI 100
           E +  A   AG Q   V++++E  +      +  I    G+ P +            +L 
Sbjct: 46  EPVVRAQLAAGAQGITVSTLKEAEQFFAAGIR-DIVYAVGMAPTRLPQALALRRRGCDLK 104

Query: 101 PVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLS 158
            V  SV      +   S  G +    ++VD   +R G+   +  L        +   +L 
Sbjct: 105 IVADSVACAQAIAAFGSAHGEAFEVWIEVDVDGHRSGIVPDDDRLIAVGRVLAEGGMRLG 164

Query: 159 LIISHLACADD 169
            +++H   + +
Sbjct: 165 GVLAHAGSSYE 175


>gi|307262633|ref|ZP_07544263.1| hypothetical protein appser13_620 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306872056|gb|EFN03770.1| hypothetical protein appser13_620 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 227

 Score = 40.0 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 18/190 (9%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDT-NLIP 101
            +       AG   F    V+EGV+   Y  Q      + I P Q    +++ +  + I 
Sbjct: 37  VEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGPLQSNKTRLVAENFDWIQ 96

Query: 102 VISSVPQLTFYSKLMSCGV---SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
            +  +      S   S      +    + +    ++ G+  +E  +           +L 
Sbjct: 97  TVDRLKIAERLSVQRSANKAPLNVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLR 156

Query: 159 LIIS--HLACADDPSSHVNSVQLERFRTLISHYKGIEA-SLASS----SGILLGPNYHFQ 211
            +++        +          + F  L   ++GI+  S+  S    + I  G      
Sbjct: 157 GLMAIPKPESEPEQQKIALRKMQKLFDRLQDEFEGIDTLSMGMSDDMAAAIECGST---- 212

Query: 212 LTRPGISLYG 221
           + R G +++G
Sbjct: 213 MVRIGTAIFG 222


>gi|183596314|ref|ZP_02958342.1| hypothetical protein PROSTU_00049 [Providencia stuartii ATCC 25827]
 gi|188023918|gb|EDU61958.1| hypothetical protein PROSTU_00049 [Providencia stuartii ATCC 25827]
          Length = 231

 Score = 40.0 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 32/194 (16%)

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQ 108
              AG + F    V+EGV+   +    +  V + I P Q    +++ +        ++ +
Sbjct: 45  AIEAGQRQFGENYVQEGVEKIQFFADRQDLVWHFIGPLQSNKSRLVAEHFDW--FHTLDR 102

Query: 109 LTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                +L     S+   L V    N      + G+ L+E  +               +++
Sbjct: 103 QKIAQRLNDQRPSNKAPLNVLIQINISDENSKSGIKLEEFDELAKQVSQMPNLVFRGLMT 162

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS------------SSGILLGPNYHF 210
                  P S     Q E FR +   Y+ ++    S            ++ I    +   
Sbjct: 163 ----IPAPESDY-QRQCEAFRKMEQAYQQLQTHYPSVDTLSMGMTDDMAAAI----HCGS 213

Query: 211 QLTRPGISLYGGTD 224
            L R G +++G  D
Sbjct: 214 TLVRIGTAIFGARD 227


>gi|237799332|ref|ZP_04587793.1| hypothetical protein POR16_10901 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022188|gb|EGI02245.1| hypothetical protein POR16_10901 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 381

 Score = 40.0 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 8/149 (5%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----L 99
              +  A   AG     V++++E            +F    I PG+             L
Sbjct: 50  SLPVIQAQIAAGASGVTVSTLKEAAHCFAEGIN-DVFYAVAIAPGKLHQALKLRSDGCRL 108

Query: 100 IPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQL 157
             +  SV                    +++D   +R GL++++ AL     +  +   QL
Sbjct: 109 SILTDSVVAAQAIVAFGQQHDERFEVWIEIDCDGHRSGLAVEDSALTEVAKTLVEGGMQL 168

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLI 186
             +++H   + D  +      L     L+
Sbjct: 169 RGVMTHAGSSYDLDTPEALQALAEQERLL 197


>gi|299135496|ref|ZP_07028685.1| alanine racemase domain protein [Afipia sp. 1NLS2]
 gi|298589751|gb|EFI49957.1| alanine racemase domain protein [Afipia sp. 1NLS2]
          Length = 366

 Score = 40.0 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 15/175 (8%)

Query: 9   LKIDLTALKNNWHSMNALS---GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L +DL A++ N  ++ A      + R     K         +IA     AG       +V
Sbjct: 21  LIVDLDAMEANIKALAARVAAYPSVRVTPHAKA----HKSVEIARRQMAAGAARMCCQNV 76

Query: 66  EEGVKLRLYTPQARIFV---LYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYS-KLMSCG 119
            E   +      + I +   + G+   +   ++     +   +  V Q+   +       
Sbjct: 77  AEAEAMAAGGINS-ILLSNEIIGVEKAKRLAQVARTAKVGVCVDHVDQVKVLADAAREAD 135

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           ++    +++D G  R G+ S  EA+    +    K    S + ++   A      
Sbjct: 136 ITFDVLIEIDVGMGRCGVTSAAEAVALAKDVAKHKNLHFSGLQAYHGTAQHLRHP 190


>gi|241766135|ref|ZP_04764043.1| alanine racemase domain protein [Acidovorax delafieldii 2AN]
 gi|241363818|gb|EER59153.1| alanine racemase domain protein [Acidovorax delafieldii 2AN]
          Length = 239

 Score = 40.0 bits (93), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 50/156 (32%), Gaps = 11/156 (7%)

Query: 82  VLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSC---GVSHPYALQVDTGFNRLGL 137
            +  I   + +++ +  +    +  +      S         +     + VD G  + G+
Sbjct: 82  CIGPIQSNKTRLVAEHFDWAHTVDRLKIAERLSAQRPAHLPALQLCIQVNVDAGPTKAGV 141

Query: 138 SLQEALDFTHNSFNKKLGQLSLIIS--HLACADDPSSHVNSVQLERFRTLIS-HYKGIEA 194
              E LD           Q+  ++S    A + +    V+      F  +      G+E 
Sbjct: 142 PPAEVLDLVCAVAKLPRLQVRGLMSIPDPAPSHEAQRAVHESARRLFEQIRQTGAPGLEK 201

Query: 195 ----SLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226
               S+  ++ +         + R G  ++GG  + 
Sbjct: 202 FDTLSMGMTADLDAAIQAGSTMVRVGTGIFGGRSRP 237


>gi|284172920|ref|YP_003406301.1| alanine racemase [Haloterrigena turkmenica DSM 5511]
 gi|284017680|gb|ADB63628.1| alanine racemase domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 371

 Score = 39.6 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 5/101 (4%)

Query: 99  LIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQ 156
           L   + S   +        +  ++    L+VD G +R G++   EA+             
Sbjct: 111 LATTVDSAATIDLLQDAAQAHEITADVILEVDVGLHRTGVAPGPEAVALAERIDEAANLS 170

Query: 157 LSLII---SHLACADDPSSHVNSVQLERFRTLISHYKGIEA 194
              I+   SH+    +  S  + +  E           IEA
Sbjct: 171 FDGILAYESHVKAEAETESEFDELCWEAMELGEDVVDDIEA 211


>gi|49475973|ref|YP_034014.1| ornithine decarboxylase [Bartonella henselae str. Houston-1]
 gi|49238781|emb|CAF28047.1| Ornithine decarboxylase [Bartonella henselae str. Houston-1]
          Length = 377

 Score = 39.6 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 60/206 (29%), Gaps = 21/206 (10%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--Q 58
           H +E   L +DL  ++ N+ +       +R    +K N A      +I   L + G    
Sbjct: 13  HRSEGPCLIVDLDIIRENYLNFEKALPQSRIFYAIKANPA-----PEILNLLASLGSSFD 67

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              V  +E  + L      +           +  I     L   + +V  +    K+   
Sbjct: 68  AASVAEIE--MAL-KAGATSDRISFGNTIKKERDIAQAYALGISLYAVDCVEEVEKIARA 124

Query: 119 GVSHPYALQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
                   +V T         +R  G     A+D    +    L Q   +  H+      
Sbjct: 125 APGVRVFCRVLTDGKGAEWPLSRKFGCVPAMAVDVLRRAHQLGL-QAYGVSFHVGS-QQT 182

Query: 171 SSHVNSVQLERFRTLISHYKGIEASL 196
                   L    T+  H +    SL
Sbjct: 183 DLSAWDRALSDAATVFRHLEHEGISL 208


>gi|294085223|ref|YP_003551983.1| hypothetical protein SAR116_1656 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664798|gb|ADE39899.1| Protein of unknown function UPF0001 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 223

 Score = 39.6 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 8/132 (6%)

Query: 51  ALYNAGVQDFFVTSVEEG----VKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISS 105
           A  +AG + F    V+E        R   P   + ++  +   +        ++I V+  
Sbjct: 46  AALDAGQRCFGENRVQEAQTRWAARRAAYPDLILHLIGALQTNKAADAVALFDVIEVVDR 105

Query: 106 VPQLTFYS-KLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                  S ++          +QV+TG      G+S  +  DF     ++    +  ++ 
Sbjct: 106 PKLARALSGEMAKQNRQLDCYIQVNTGDEPQKSGISPADVDDFIAQCRDEYGLNIIGLMC 165

Query: 163 HLACADDPSSHV 174
                ++P+ H 
Sbjct: 166 IPPADEEPAMHF 177


>gi|87199811|ref|YP_497068.1| Orn/DAP/Arg decarboxylase 2 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135492|gb|ABD26234.1| Orn/DAP/Arg decarboxylase 2 [Novosphingobium aromaticivorans DSM
           12444]
          Length = 401

 Score = 39.6 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 28  GNARTAAVVKDNAYGLGCEKIA---PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLY 84
                 AV K N         A     L+++GV  + V S+ E   +R   P+A +  ++
Sbjct: 40  PGKSLYAV-KAN-------PSADLLRVLWDSGVTHYDVASIAEVRLVRATLPEATLCFMH 91

Query: 85  GI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-----GVSHPYALQVDTGF------ 132
            +  P   +  ++ + +  + S+       K+         ++    L+V + +      
Sbjct: 92  PVKAPAAIREAYEQHGVR-VFSLDSFEELEKIKEACGFAEDLTLCVRLRVSSDYSELSLA 150

Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++ G  L  A +    +  ++      +  H+              LER R  I
Sbjct: 151 SKFGCDLTNAAELLQAT--RQAADSLGVCFHVGSQSMSPHAYVQA-LERVRAAI 201


>gi|255513418|gb|EET89684.1| Radical SAM domain protein [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 350

 Score = 39.6 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 14/169 (8%)

Query: 45  CEKIAPALYNAGVQDFFVTS---VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP 101
              +A   +  G+   FV++    +E ++L      A +        G  + IF      
Sbjct: 137 AIDVAKIAHKNGISTMFVSNGYLTKESIRLMKGNIDAVVV----DFKGNGERIFSNKFEA 192

Query: 102 VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
           +    P      +L + G+        D    R+G S +                + +  
Sbjct: 193 IADEKPIFDALLELKAAGIHVEIT---DLIIPRVGDSEEACRKLARWVVRNLGPDIPMHF 249

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF 210
           +       P   +       F TL  HY   +    + + I   P+  +
Sbjct: 250 NRFH----PDYKMTDYNATSFDTLKRHYDIAKDEGVNFAYIGNVPDTTY 294


>gi|311108043|ref|YP_003980896.1| D-serine deaminase 2 [Achromobacter xylosoxidans A8]
 gi|310762732|gb|ADP18181.1| D-serine deaminase 2 [Achromobacter xylosoxidans A8]
          Length = 433

 Score = 39.6 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 62/200 (31%), Gaps = 34/200 (17%)

Query: 9   LKIDLTALKNNWHSM--------NALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQD 59
           L +D  A  +N   +         AL+ +A+T               +I   L +AG   
Sbjct: 49  LTLDEAAFAHNVEQIFQYARSHGAALAPHAKTPM-----------SPQIVQRLLDAGAWG 97

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLY--------GIHPGQEKIIF-DTNLIPVISSVPQLT 110
             V ++++   L          +L         G   G+    + D  L+    S   + 
Sbjct: 98  ATVANLQQAAVLLRAGVSR--LMLGNEIGGAASGARLGKLLAAYPDARLLAFADSAATVR 155

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ--LSLIISHLACAD 168
             +   +     P  + V+ G  R G     A+    ++  ++  +  L+ + ++     
Sbjct: 156 SLA-AAAAEAGRPVEVLVEVGGGRAGARDDAAVAAILDAIGEQGDKLALAGVATYEGAVA 214

Query: 169 DPSSHVNSVQLERFRTLISH 188
                + +  +       + 
Sbjct: 215 SSDVALTAQNIAALMARAAR 234


>gi|186682117|ref|YP_001865313.1| alanine racemase domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186464569|gb|ACC80370.1| alanine racemase domain protein [Nostoc punctiforme PCC 73102]
          Length = 222

 Score = 39.6 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 19/192 (9%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEG----VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP 101
            +     Y+AG++DF  + ++E      +L    P      +  +   + K   +    P
Sbjct: 31  VEAIRFAYSAGIRDFAESRIQEAASKQAELHDL-PDITWHFIGHLQSNKAKKAIEQ--FP 87

Query: 102 VISSVPQLTFYSKLMSCGVSHPY------ALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155
            I SV  L    +L                +++    N+ G S+ E L         K  
Sbjct: 88  WIHSVDNLKLAQRLDQLAQQLRVSPQVCLQVKILPDPNKSGWSVPELLADLPTLDQYKNL 147

Query: 156 QLSLIISHLACADDPSSHVNSVQLER------FRTLISHYKGIEASLASSSGILLGPNYH 209
           Q+  +++      +    +N   L R           SH K  + S+  S    L     
Sbjct: 148 QIQGLMTIPPSGLNNPEILNVFNLNRELAKKIQEQNWSHIKMQQLSMGMSGDYELAVQAG 207

Query: 210 FQLTRPGISLYG 221
             + R G  L+G
Sbjct: 208 ATMVRLGTILFG 219


>gi|196248403|ref|ZP_03147104.1| thiamine-phosphate pyrophosphorylase [Geobacillus sp. G11MC16]
 gi|196212128|gb|EDY06886.1| thiamine-phosphate pyrophosphorylase [Geobacillus sp. G11MC16]
          Length = 221

 Score = 39.6 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 22/93 (23%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT---------SVEEG--- 68
             +    G+ +   V   +A     E+ A A   AG     V             E    
Sbjct: 103 RRVREKIGD-KILGV---SA--HNVEE-ARAAIEAGADYIGVGPIYPTRSKDDANEAQGP 155

Query: 69  ---VKLRLYTPQARIFVLYGIHPGQEKIIFDTN 98
                LR       I  + GI     + + +  
Sbjct: 156 GILRHLREQGITIPIVAIGGITADNTRAVIEAG 188


>gi|68248701|ref|YP_247813.1| hypothetical protein NTHI0168 [Haemophilus influenzae 86-028NP]
 gi|68056900|gb|AAX87153.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
          Length = 237

 Score = 39.6 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 76/238 (31%), Gaps = 43/238 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +      A           +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKT-------KPISEILSAYQAGQTAFG 54

Query: 62  VTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLM 116
              V+EGV+                +  +   + +++ +  + +  +         ++  
Sbjct: 55  ENYVQEGVEKIQYFESQGVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQR 114

Query: 117 ---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + +    ++ G+  +E L    +  N     L  ++   A        
Sbjct: 115 PTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLM---AIPAPTDKI 171

Query: 174 VNSVQLERFRTLISHYKGIEASLAS------SSGILLGPNY----HFQLTRPGISLYG 221
             + Q   FR +   ++ ++ +L +      S G+             + R G +++G
Sbjct: 172 --AEQEAVFRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFG 227


>gi|103488650|ref|YP_618211.1| threonine aldolase family protein [Sphingopyxis alaskensis RB2256]
 gi|98978727|gb|ABF54878.1| threonine aldolase family protein [Sphingopyxis alaskensis RB2256]
          Length = 381

 Score = 39.6 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 40/144 (27%), Gaps = 26/144 (18%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +D  AL  N   M AL+         +A+T               IA    +AG    
Sbjct: 26  LILDREALDRNIARMAALTKAAGVALRPHAKT----------HKSVDIARRQLDAGAVGV 75

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT------NLIPVISSVP-QLTFYS 113
               + E   L        I +   +                  L+ V+      +   +
Sbjct: 76  CCAKIGEAEILADGGITG-ILITSPVAAPAAIARLAKLAARAEGLMAVVDHPAVAVRVDA 134

Query: 114 KLMSCGVSHPYALQVDTGFNRLGL 137
            L   G      + +D G  R G+
Sbjct: 135 ALAVEGARLDVIIDIDPGIARTGV 158


>gi|319796099|ref|YP_004157739.1| alanine racemase domain protein [Variovorax paradoxus EPS]
 gi|315598562|gb|ADU39628.1| alanine racemase domain protein [Variovorax paradoxus EPS]
          Length = 233

 Score = 39.6 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 36/217 (16%)

Query: 27  SGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV----KLRLYTPQAR 79
               R  AV K    +A            + AG   F    V+EG+     L        
Sbjct: 26  PAGVRLLAVSKTFGADA--------VRDAHAAGQTAFGENYVQEGLDKIEALADLRASLE 77

Query: 80  IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP------YALQVDTGFN 133
              +  +   + + + +      + S+ +L    +L +   +H         + VD G N
Sbjct: 78  WHCIGPLQSNKTRPVAEQFDW--VHSIDRLKIAERLSAQRPAHLAPLNVCLQVNVDGGAN 135

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE 193
           + G+  +EA+            +L  ++     A    +   + Q +      + ++ I+
Sbjct: 136 KSGVPPEEAVALARAVAALPHLRLRGLM-----AIPEPAPDFAAQRDLCLRAHAVFESIK 190

Query: 194 --------ASLASSSGILLGPNYHFQLTRPGISLYGG 222
                    SL  S+ +    +    + R G +++GG
Sbjct: 191 GAGIALDTLSLGMSADLEAAISAGSTMVRVGTAIFGG 227


>gi|159125623|gb|EDP50740.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
          Length = 465

 Score = 39.6 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 26/135 (19%)

Query: 60  FFVTSVEEGVKL-----RLYTPQARIFVLYGIH--PGQEKIIF-----------DTNL-- 99
           F V++V E   L      L     R+ VLYGI   P     +            D +L  
Sbjct: 87  FVVSTVAELETLLPLFQELQGQHRRVSVLYGIPLVPSHVPRLAAVARQLHTTDLDHDLPV 146

Query: 100 IPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQ-----EALDFTHNSFNKK 153
             ++    QL +        G+     L++DTG++R GL          L+         
Sbjct: 147 SVLVDHPDQLAYLGPFHEVAGLPAGVFLKIDTGYHRAGLPPDMLNKSGLLEKVLEEERLG 206

Query: 154 LGQLSLIISHLACAD 168
             +L  + SH + + 
Sbjct: 207 HARLIGVYSHSSLSY 221


>gi|319404815|emb|CBI78416.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 226

 Score = 39.6 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 19/142 (13%)

Query: 31  RTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVL 83
           +  AV   V  N        I P L  AG   F    V+E  +    LR       + ++
Sbjct: 34  QLIAVSKTVAAN-------NIVP-LLQAGHSLFAENRVQEAAEKWPSLRQKFNTIELHLI 85

Query: 84  YGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSH-PYALQVDTGFNR--LGLSL 139
             +   +        ++I  +         ++ M     H P  +QV+ G      G+  
Sbjct: 86  GPLQSNKTAEAVRIFDVIQTVDREKIAKSLAEEMHKQKKHLPCYIQVNIGLEPQKSGIFP 145

Query: 140 QEALDFTHNSFNKKLGQLSLII 161
            E   F     N     +  ++
Sbjct: 146 HEVKAFVAQCKNNYGLDIVGLM 167


>gi|150019968|ref|YP_001305322.1| alanine racemase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149792489|gb|ABR29937.1| alanine racemase domain protein [Thermosipho melanesiensis BI429]
          Length = 353

 Score = 39.6 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 27/170 (15%)

Query: 6   FLRLKIDLTALKNNWHSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFV 62
           F +L I+L  +  N   +    GN    AV   V      LG  KIA  L   G+     
Sbjct: 3   FPKLIINLEHIAKNAEILLKKLGNIELVAVTKLV------LGNPKIAKILKEVGIPKIG- 55

Query: 63  TSVEEGVKLRLYTPQARIF--VLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLM--- 116
                  + RL   +  I   +       +  +I + N  +P++  +     ++ L    
Sbjct: 56  -------ESRLLNIKKMISHNIPGPFQLLRIPMISELNEAVPIVDEILISDEFTALKIDE 108

Query: 117 ---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIIS 162
                  +      VD G  R G+  ++A     N   K K+ +++ I +
Sbjct: 109 IAQKYDKNIELIYMVDVGDLREGVWFEKARKTIENVAKKLKMAKITGIGT 158


>gi|241864906|gb|ACS68536.1| low-specificity threonine aldolase [uncultured bacterium FLS18]
          Length = 407

 Score = 39.6 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 29/169 (17%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEK---------IAPALYNAGVQD 59
           L IDL  +  N   M   +                G            IA    + G   
Sbjct: 53  LLIDLDRMDGNLRKMADHARGKNV-----------GLRPHTKTHKCPIIAKMQIDLGAVG 101

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ------EKIIFDTNLIPVISSVPQLTFY- 112
                V E  ++        + +   +   +            + +  V+ +   +  + 
Sbjct: 102 VCAAKVSEA-EVMAAGGVGNVLITSPVVTSEKISRVVALAKKSSGIQMVVDNAKTIDDFN 160

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLI 160
               + G+     L +DTG  R G+++ + AL            Q   +
Sbjct: 161 EAAKAAGIELRVILDLDTGTKRTGIAVGKPALALAQQIDKCDALQFDGL 209


>gi|326424273|ref|NP_762625.2| putative amino acid racemase [Vibrio vulnificus CMCP6]
 gi|319999659|gb|AAO07615.2| Predicted amino acid racemase [Vibrio vulnificus CMCP6]
          Length = 360

 Score = 39.6 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 68/215 (31%), Gaps = 26/215 (12%)

Query: 48  IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
           IA  L +AG      + +E   ++          ++      Q   + +   I + + + 
Sbjct: 44  IAQLLIDAGASTLADSRIENIQRMVHSGITVPKMLIRTPMLSQTAKVVEYCDISLNTEIQ 103

Query: 108 QLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
            +   S++       H   + V+ G  R G+     + F     +     +  I ++L C
Sbjct: 104 VIQQLSRVAKQVNSKHGVIIMVELGDLREGVMPSRLIGFISEIISLPNIIIKGIGANLTC 163

Query: 167 --ADDPSSHVNSVQLERFRTLISHYKGIEA---------SLASSSGI---LLGP-NYHFQ 211
                P         ++ R L     GIEA         S  +SS I   L         
Sbjct: 164 RYGITPDD-------KKMRLLSDLADGIEAVFGINLEIISGGNSSSINWVLAHQGRTRIN 216

Query: 212 LTRPGISLY-GGTDKINKSHP--MQTVVTAEARII 243
             R G +++ G      +         VT  A +I
Sbjct: 217 NLRLGEAIFLGCVPNEQQPLGGLHTDAVTLTAEVI 251


>gi|138895024|ref|YP_001125477.1| thiamine-phosphate pyrophosphorylase [Geobacillus
           thermodenitrificans NG80-2]
 gi|166228073|sp|A4IN28|THIE_GEOTN RecName: Full=Thiamine-phosphate pyrophosphorylase; Short=TMP
           pyrophosphorylase; Short=TMP-PPase; AltName:
           Full=Thiamine-phosphate synthase
 gi|134266537|gb|ABO66732.1| Thiamin-phosphate pyrophosphorylase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 221

 Score = 39.6 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 22/93 (23%)

Query: 21  HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT---------SVEEG--- 68
             +    G+ +   V   +A     E+ A A   AG     V             E    
Sbjct: 103 RRVREKIGD-KILGV---SA--HNVEE-ARAAIEAGADYIGVGPIYPTRSKDDANEAQGP 155

Query: 69  ---VKLRLYTPQARIFVLYGIHPGQEKIIFDTN 98
                LR       I  + GI     + + +  
Sbjct: 156 GILRHLREQGITIPIVAIGGITADNTRAVIEAG 188


>gi|52081132|ref|YP_079923.1| putative alanine racemase [Bacillus licheniformis ATCC 14580]
 gi|52786510|ref|YP_092339.1| hypothetical protein BLi02775 [Bacillus licheniformis ATCC 14580]
 gi|319644904|ref|ZP_07999137.1| hypothetical protein HMPREF1012_00170 [Bacillus sp. BT1B_CT2]
 gi|52004343|gb|AAU24285.1| putative alanine racemase [Bacillus licheniformis ATCC 14580]
 gi|52349012|gb|AAU41646.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317392713|gb|EFV73507.1| hypothetical protein HMPREF1012_00170 [Bacillus sp. BT1B_CT2]
          Length = 368

 Score = 39.6 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 106/345 (30%), Gaps = 59/345 (17%)

Query: 9   LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L ID   + +N   M         +L  + +T              K+A      G    
Sbjct: 11  LLIDKDVMLSNMKDMQNYANEQKVSLRPHTKT----------HKMPKLAKLQEEMGAVGI 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQLTFYSKL 115
            V  V E   +     +  IF+   I    +           ++   I S  Q+    ++
Sbjct: 61  AVAKVGEAEVMARNGLK-DIFIANEIVGKSKLERIRKLSETIDISFGIDSAYQVREIEEV 119

Query: 116 -MSCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPS-- 171
                      ++++ G  R G+  ++            +  +L  I SH   +      
Sbjct: 120 FEGASKKAQVLVEIEVGEQRSGIIEEDDFRTLLELIKTCQNVELKGIFSHDGHSYKAKSV 179

Query: 172 ---SHVNSVQLER---FRTLISH--YKGIEASLASSSGILLGPNYHFQL------TRPGI 217
                +    +ER   F  +      K    S+ S+   +    + F +       RPG 
Sbjct: 180 AHCKELYKESVERTLHFARIAEEMDLKPKVVSIGSTPPFM----FKFDIPEGVTEIRPGT 235

Query: 218 SLYGGTDKINK-SHPMQTVVTAEARIIL--IRKALAGELVSYGGQKKLTRDSLIAVAAIG 274
            ++    + N      +   +    +I    ++ +  ++ + G   +   + L A   +G
Sbjct: 236 YIFMDASQANVIGTYDRCAASVLTTVISKPTKERVITDVGAKGITAQTRSEGLTATKGLG 295

Query: 275 ----YADGYPLTLSGLDS-----EHSPSVFLGGKG-FIKGYMVPI 309
               Y D Y   +    +     E +  V +G K   I  ++ P+
Sbjct: 296 RIKEYEDVYIHGVFDEHAIIYHEEFNKKVSIGDKVRIIPNHICPV 340


>gi|319407775|emb|CBI81422.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 226

 Score = 39.6 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 8/118 (6%)

Query: 52  LYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSV 106
           L  AG   F    V+E  +    LR       + ++  +   +        ++I  +   
Sbjct: 50  LLKAGQSLFAENRVQEAAEKWPSLRQQFNTIELHLIGPLQSNKTAEAVTIFDVIQTVDRE 109

Query: 107 PQLTFYSKLMSCGVSH-PYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLII 161
                 ++ M     H P  +QV+ G      G+   E   F     N     +  ++
Sbjct: 110 KIAKSLAEEMHKQKKHLPCYIQVNIGLEPQKSGIFPHEVKAFVAQCKNNYGLDIIGLM 167


>gi|239832888|ref|ZP_04681217.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
 gi|239825155|gb|EEQ96723.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
          Length = 250

 Score = 39.6 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 82/238 (34%), Gaps = 39/238 (16%)

Query: 16  LKNNWHSMNALSGNAR-----------TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +  N +++ A   +A              AV K        ++I P L +AG + F    
Sbjct: 28  IVANLNTVKAAIASAEKEARREKGSVTLVAVSKTF----DADEIRPVL-DAGQRVFGENR 82

Query: 65  VEEGV----KLRL--YTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMS 117
           V+E      +LR      +     L+ I P Q     D   L  VI +V +    + L +
Sbjct: 83  VQEAQGKWPQLRGDYSGIE-----LHLIGPLQSNKAADAVALFDVIETVDREKIAAALAA 137

Query: 118 ----CGVSHPYALQVDTGFN--RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
                  +    +QV+TG    + G++ +EA+ F      +    +  ++      ++P 
Sbjct: 138 EIKKQNKTPKLYVQVNTGLEEQKAGIAPKEAVAFVERCRKEHGLAIEGLMCIPPAGENPG 197

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
            H           L       + S+  S        +     R G +++GG    N +
Sbjct: 198 PHF-----ALLEKLAREAGVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRSYANPA 250


>gi|170697287|ref|ZP_02888381.1| alanine racemase domain protein [Burkholderia ambifaria IOP40-10]
 gi|170137907|gb|EDT06141.1| alanine racemase domain protein [Burkholderia ambifaria IOP40-10]
          Length = 376

 Score = 39.6 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 60/178 (33%), Gaps = 30/178 (16%)

Query: 11  IDLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           ID+  ++NN   M A                +   VV  +A      +IA      G Q 
Sbjct: 13  IDVDRMRNNIARMQAHLDALGVRFRPHVKTTKCQHVV--DA------QIA-----GGAQG 59

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT--NLIPVISSVPQLTFYSKL 115
             V++++E  +      +  ++ +  I    GQ   +     +L  V  SV      ++ 
Sbjct: 60  ITVSTLKEAEQFFAAGVRDIVYAVGMIPAKLGQALALRRQGCDLKIVADSVETANAIAEF 119

Query: 116 -MSCGVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPS 171
               G      +++D   +R G+   + L      +       L  +++H   + +  
Sbjct: 120 GREHGERFDVWIEIDVDGHRSGIPPDDGLLIDVGRALVDGGMALGGVLAHAGSSYEYD 177


>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
 gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
          Length = 760

 Score = 39.6 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           G++D  V  ++E  +L      A I         +   +       ++ S        +L
Sbjct: 328 GLEDLAVVILDEADRLLELGFSAEI--------QELIRMCPKRRQTMLFSATMTEEIDEL 379

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL 157
           +   ++ P  L+ D    R     +E +       + +   L
Sbjct: 380 IKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVL 421


>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
 gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
          Length = 770

 Score = 39.6 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
           G++D  V  ++E  +L      A I         +   +       ++ S        +L
Sbjct: 305 GLEDLAVVILDEADRLLELGFSAEI--------QELIRMCPKRRQTMLFSATMTEEIDEL 356

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL 157
           +   ++ P  L+ D    R     +E +       + +   L
Sbjct: 357 IKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVL 398


>gi|159043441|ref|YP_001532235.1| alanine racemase domain-containing protein [Dinoroseobacter shibae
           DFL 12]
 gi|157911201|gb|ABV92634.1| alanine racemase domain protein [Dinoroseobacter shibae DFL 12]
          Length = 387

 Score = 39.6 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 34/184 (18%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV---VKDNAYGLG----CEKIAPALYNAGVQDFF 61
           L +DL AL+ N   M   +       V   V       G       +A      G     
Sbjct: 32  LVVDLDALERNVVKMGNFAKE---MGVRHRV------HGKMHKSVDVAKLQMELGGAC-G 81

Query: 62  VTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVPQLTFYS 113
           V    V E         +  + V   +  P +   +          I  +  +  +   S
Sbjct: 82  VCCQKVSEAEAFARGGIK-DVLVSNQVRDPAKIDRLARIPRLGARAICCVDDIENVADLS 140

Query: 114 KLMSC-GVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI------ISHLA 165
              +  G      +++D G  R G+ +    ++           + S +      + HL 
Sbjct: 141 AAATKHGTQIECLVEIDCGAGRCGVTTTPAVVEIAKAIDAAPGLKFSGLQAYQGAMQHLD 200

Query: 166 CADD 169
             D+
Sbjct: 201 SYDE 204


>gi|255937455|ref|XP_002559754.1| Pc13g13400 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584374|emb|CAP92409.1| Pc13g13400 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 446

 Score = 39.6 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 70  KLRLYTPQARIFVLYGIH--PGQEKIIF-------DTNLIPVISSVPQLTFYSKLMS-CG 119
           +L+    +  I +LYGI   P Q  ++        + ++  +I    QL +  KL S  G
Sbjct: 95  ELKQEGRK--INILYGIPLVPSQVPLLAKAARELGENSITVMIDHPDQLPYLEKLSSLAG 152

Query: 120 VSHPYALQVDTGFNRLGLSL 139
                 ++VDTG++R GL  
Sbjct: 153 HPTCVFVKVDTGYHRAGLPP 172


>gi|104779598|ref|YP_606096.1| hypothetical protein PSEEN0318 [Pseudomonas entomophila L48]
 gi|95108585|emb|CAK13279.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 228

 Score = 39.6 bits (92), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 30/193 (15%)

Query: 50  PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPVISSV 106
              + +G++DF    ++E +  +         +      I   + K I +      + SV
Sbjct: 44  REAHASGLRDFGENYLQEALTKQQELSDLP-LIWHFIGPIQSNKTKAIAEHFDW--VHSV 100

Query: 107 PQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
            +L    +L          ++    + V    ++ G +  E              +L  +
Sbjct: 101 DRLKIAQRLSEQRPANLPPLNICLQVNVSGEDSKSGCAPAELPALAQAVSALPGLRLRGL 160

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQ 211
           +       +P+ +    Q   F TL    + ++  L      L     H           
Sbjct: 161 M----AIPEPTDNRTE-QEAAFATLRQLQEQLDLGLD----TLSMGMSHDLEAAISQGAT 211

Query: 212 LTRPGISLYGGTD 224
             R G +L+G  D
Sbjct: 212 WVRIGTALFGARD 224


>gi|88855309|ref|ZP_01129973.1| diaminopimelate decarboxylase [marine actinobacterium PHSC20C1]
 gi|88815216|gb|EAR25074.1| diaminopimelate decarboxylase [marine actinobacterium PHSC20C1]
          Length = 467

 Score = 39.6 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 61/220 (27%), Gaps = 44/220 (20%)

Query: 47  KIAPALYNAG--VQDFFVTSVEE-GVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIP 101
           ++A  +  AG  +    V S  E  V L      A     +G +    +        + P
Sbjct: 98  EVARWMTAAGLNID---VASAGEMAVAL-AAGVDASRLGFHGNNKSLSEIDRAVRAGIGP 153

Query: 102 VISS--VPQLTFYSKLMSCGVSHPYALQVDTGFN--------------RLGLSLQEALDF 145
           ++    V            G +    L++++G +              + G+ L EA   
Sbjct: 154 IVIDSVVEIGRVADAATRHGRTQRVRLRINSGVHASTHEYLATAREDQKFGIPLAEAESV 213

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG 205
                +        I SH+      ++         F         + A LA+     LG
Sbjct: 214 VAQIRSHGSLDFVGIHSHIGSQIFDTAG--------FAEAAQRLLELHARLAA-----LG 260

Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
           P     L       Y   D+         V    A +  I
Sbjct: 261 PVPELNLGGGFGIAYTSADEA------LPVAELAASLASI 294


>gi|254561232|ref|YP_003068327.1| ornithine/diaminopimelate PLP-dependent decarboxylase
           [Methylobacterium extorquens DM4]
 gi|254268510|emb|CAX24467.1| putative ornithine/diaminopimelate PLP-dependent decarboxylase
           [Methylobacterium extorquens DM4]
          Length = 388

 Score = 39.6 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 66/232 (28%), Gaps = 37/232 (15%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE--- 67
           DL  +++N+ +      + R    VK N A      ++   L   G   F   SV E   
Sbjct: 26  DLDVVRDNYTAFARALPDTRVFYAVKANPA-----AEVLRLLAEMG-SCFDTASVAEIEM 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPY 124
            +        A           +  I+    L   +  +    ++    +          
Sbjct: 80  ALA---AGATADRVSFGNTIKKERDIVRALKLGIRLFAVDCQAEVEKIVRASEAAGIAAG 136

Query: 125 ALQV-----------DTGFNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADD 169
            +QV           D   +R  G   +     L+  H       G    + S  A  + 
Sbjct: 137 EVQVFCRILCDGAGADWPLSRKFGCEPEMAVNVLEHAHRHGLHAYGVSFHVGSQQANTEA 196

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
               + S   E FR      +GI  S+ +  G             PG+  YG
Sbjct: 197 WDGALASAS-EIFREC--ALRGIGLSMVNLGGGFPTKYLKQ---VPGVETYG 242


>gi|224367263|ref|YP_002601426.1| NspC [Desulfobacterium autotrophicum HRM2]
 gi|223689979|gb|ACN13262.1| NspC [Desulfobacterium autotrophicum HRM2]
          Length = 385

 Score = 39.6 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 16/218 (7%)

Query: 11  IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +D   L++N   +  +      R    +K  A      ++ P L    +     +S +E 
Sbjct: 21  VDADCLRHNLSILARVKQATGCRILLALKGFA----MFRVFPLLRET-LDGVCASSPDEA 75

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQ 127
              R    +                +   +   V +S  Q   + +++ + G +    ++
Sbjct: 76  RLGREEFCREVHTFAAAFSDEHMDELLTLSDHIVFNSFGQWKRFKARVQAAGRAISCGIR 135

Query: 128 VDT----GFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS-HLACADDPSSHVNSVQLERF 182
           V+     G   L               N +  +L+ I   H     +  +      +  F
Sbjct: 136 VNPEHSEGTIPLYDPCAPGSRLGVRRANFEAAELAGISGLHFHTLCEQDADALERTVTAF 195

Query: 183 RT-LISHYKGIEASLASSSGILLGPNYHFQLTRPGISL 219
                   KG+     +  G        + L R    +
Sbjct: 196 EHGFGPFLKGLAW--VNFGGGHHITRPGYDLERLCRVI 231


>gi|295667948|ref|XP_002794523.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226285939|gb|EEH41505.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 486

 Score = 39.6 bits (92), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 99  LIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLG 155
           +  ++ +   + F +K       +    +++DTG+ R G+     E  D   +    +  
Sbjct: 92  ISVLVDTPEIIPFLAKYRELTSDTLGVFIKLDTGYQRAGVCPDSYEFRDLVADIHAAEHD 151

Query: 156 Q-----LSLIISHLACADDPSSH 173
           +     L    SH   + D SS 
Sbjct: 152 ETSSISLRGFYSHFGSSYDSSSE 174


>gi|319899290|ref|YP_004159385.1| lysine/ornithine decarboxylase [Bartonella clarridgeiae 73]
 gi|319403256|emb|CBI76815.1| lysine/ornithine decarboxylase [Bartonella clarridgeiae 73]
          Length = 453

 Score = 39.3 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 13/131 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDF 60
           H +E   L +DL  +  N+ +       +R    +K N A      +I   L + G   F
Sbjct: 89  HRSEGPCLVVDLDVVHENYLNFKKALPQSRIFYAIKANPA-----PEILRLLVSLG-SSF 142

Query: 61  FVTSVEE---GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
              S+ E    +        A           +  I     L   + +V  L    K+  
Sbjct: 143 DAASIAEIEMAL---KAGATADRISFGNTIKKERDIARAHALGVSLYAVDCLEEVEKVAC 199

Query: 118 CGVSHPYALQV 128
                    +V
Sbjct: 200 AAPGARVFCRV 210


>gi|150397970|ref|YP_001328437.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium medicae WSM419]
 gi|150029485|gb|ABR61602.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium medicae WSM419]
          Length = 377

 Score = 39.3 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 11/123 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+ +      ++     VK N A      ++   L + G       V  +
Sbjct: 20  LVVDLDVVRDNFKAFRHALPDSAIYYAVKANPA-----PEVLRLLASLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  + L                  +  +     L   + +V       K+          
Sbjct: 75  E--MAL-DAGATPNRISYGNTIKKERDVARAHTLGISLFAVDSHEEVEKIARAAPGARVF 131

Query: 126 LQV 128
            +V
Sbjct: 132 CRV 134


>gi|299065741|emb|CBJ36917.1| conserved protein of unknown function, Alanine racemase domain
           protein [Ralstonia solanacearum CMR15]
          Length = 376

 Score = 39.3 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLI 100
           E +  A   AG Q   V++++E  +      +  I    G+ P +            +L 
Sbjct: 46  EPVVRAQLAAGAQGITVSTLKEAEQFFAAGIR-DIVYAVGMAPAKLPQALALRRRGCDLK 104

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLS 158
            V  SV      +      G +    ++VD   +R G++  +  L        +   +L 
Sbjct: 105 IVADSVTCAQAIAAFGGEHGEAFDVWIEVDVDGHRSGIAPDDDRLIAVGRVLAEGGMRLG 164

Query: 159 LIISHLACADD 169
            +++H   + +
Sbjct: 165 GVLAHAGSSYE 175


>gi|254454116|ref|ZP_05067553.1| threonine aldolase, low-specificity [Octadecabacter antarcticus
           238]
 gi|198268522|gb|EDY92792.1| threonine aldolase, low-specificity [Octadecabacter antarcticus
           238]
          Length = 387

 Score = 39.3 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 41/208 (19%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYNAGV 57
           L +DL AL+ N   M   +         K      G              +     + G 
Sbjct: 32  LILDLDALERNVKKMGDYA---------KA----HGMRHRAHGKMHKSVDVLKLQQDMGA 78

Query: 58  QDFFVTS--VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQLT 110
               V    V E         +  +       P + K + +       ++  +     + 
Sbjct: 79  -AIGVCCQKVSEAEVFARGGIKDVMISNQVTEPAKIKRLAEMPKYGCRVLVCVDDPENVK 137

Query: 111 FYS-KLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI------IS 162
             S   ++ G      ++VD G  R G+ + Q+ ++           + + I      + 
Sbjct: 138 NLSDAAVAAGTQIEALVEVDCGAGRCGVNTTQDVVNIAKLIDAAPGLKFAGIQAYQGAMQ 197

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYK 190
           H+    D    +N+  +E+    +   K
Sbjct: 198 HMDLYADREVKLNAA-IEQVGDAVQGLK 224


>gi|317050118|ref|YP_004117766.1| alanine racemase domain-containing protein [Pantoea sp. At-9b]
 gi|316951735|gb|ADU71210.1| alanine racemase domain protein [Pantoea sp. At-9b]
          Length = 381

 Score = 39.3 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 81/269 (30%), Gaps = 44/269 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYG---------LGCEKIAPALYNAGVQD 59
           L+ID   L+ N   M             K +A G              IA      G + 
Sbjct: 23  LEIDAARLQRNLQQMQQ-----------KADAAGVALRPHIKTHKSVWIAQQQRALGARG 71

Query: 60  FFVTSVEEGVKL-----RLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFY 112
             V+   EGV       R       + VL        Q        +  +  S+  +   
Sbjct: 72  VTVSKPSEGVAFILGGERDLLLAYPV-VLAATLAELLQVATENHARITCIADSLSGVAAI 130

Query: 113 SKLMSCGVSHP--YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADD 169
           +       +     A++VD G +R+G++    A      + N      + ++SH   A  
Sbjct: 131 AAAHQQQPTAELAVAIKVDVGLHRVGVNPDSNAALELAEAINTAGLPFAGLVSHAGHAYG 190

Query: 170 PS-----SHVNSVQLE-----RFRTLISHYKGIEASLASSSGILLGPNYHF-QLTRPG-- 216
                    V   ++      + R + + +     S+ S+   L  P        RPG  
Sbjct: 191 AGHAAAICEVARQEIALMRGVQQRLIAAGFTSCPISVGSTPTALAAPVAEGSDEIRPGNY 250

Query: 217 ISLYGGTDKINKSHPMQTVVTAEARIILI 245
             L     ++    P    ++   R++ +
Sbjct: 251 ALLDLTAWRLGLCTPDALALSVVTRVVAV 279


>gi|56708810|ref|YP_164851.1| alanine racemase domain-containing protein [Ruegeria pomeroyi
           DSS-3]
 gi|56680495|gb|AAV97160.1| alanine racemase domain protein [Ruegeria pomeroyi DSS-3]
          Length = 390

 Score = 39.3 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 17/101 (16%)

Query: 73  LYTPQARIFV--------LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHP 123
              P+A I +        + G  P       D  +  +I S  +L  Y+ L +    +  
Sbjct: 85  AAFPEADILLGKPMPVGAVAGTSPT-----LDAQVHWLIDSPERLAEYAALAAQSDRALR 139

Query: 124 YALQVDTGFNRLGLSLQEALDFTH---NSFNKKLGQLSLII 161
             L+VD G +R G SL  A +F        +     L+ ++
Sbjct: 140 ICLEVDIGLHRGGFSLARAGEFAAALTRLRDDPNLHLTGLM 180


>gi|254475844|ref|ZP_05089230.1| diaminopimelate/ornithine decarboxylase [Ruegeria sp. R11]
 gi|214030087|gb|EEB70922.1| diaminopimelate/ornithine decarboxylase [Ruegeria sp. R11]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 25/127 (19%)

Query: 36  VKDN---AYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQ 90
           VK N   A       +   L  AG+  F V S  E   +R  +P A   V++  +P    
Sbjct: 73  VKANPHPA-------VLSNLVAAGITAFDVASPAEMDAVRAASPDA---VMHYNNPVRSD 122

Query: 91  EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV---------DTGFNRLGLSLQE 141
            +I    +      SV   +  +KL     S   A++          D G ++ G S +E
Sbjct: 123 AEIAAGIDHGVASWSVDDASELAKLADVPKSCEIAVRFALPVAGAAYDFG-SKFGASPEE 181

Query: 142 ALDFTHN 148
           A+     
Sbjct: 182 AVALLKA 188


>gi|218778253|ref|YP_002429571.1| alanine racemase domain protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759637|gb|ACL02103.1| alanine racemase domain protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 233

 Score = 39.3 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 46/181 (25%), Gaps = 34/181 (18%)

Query: 16  LKNNWHSMNALSGNA-----------RTAAVVK---DNAYGLGCEKIAPALYNAGVQDFF 61
           +  N   +      A           R  AV K            ++      AG   F 
Sbjct: 5   ISKNLQEIQERIQKAAEECGRDPQSIRLVAVSKTKPA--------EMLRQAAAAGATIFG 56

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQLTFY----SK 114
              ++E    R    +     +     G     K  +   L  +I SV           +
Sbjct: 57  ENYIQEA---REKIAELESLDVEWHFIGHLQSNKAKYAVPLFSLIHSVDSFKLAGEIDKQ 113

Query: 115 LMSCGV--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
               G        + +     + G + +EA          +  ++  +++     DDP  
Sbjct: 114 AAKAGKIQDILVQVNISGEETKSGTADEEAATLVKEISALENVRVKGLMTMPPFFDDPDR 173

Query: 173 H 173
            
Sbjct: 174 A 174


>gi|269139319|ref|YP_003296020.1| putative diaminopimelate decarboxylase [Edwardsiella tarda EIB202]
 gi|267984980|gb|ACY84809.1| putative diaminopimelate decarboxylase [Edwardsiella tarda EIB202]
 gi|304559225|gb|ADM41889.1| Vibrioferrin decarboxylase protein PvsE [Edwardsiella tarda FL6-60]
          Length = 390

 Score = 39.3 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 95/335 (28%), Gaps = 51/335 (15%)

Query: 12  DLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG--VQDFFVTSVEEG 68
           DL+AL+    +M  L   +       K NA      + AP L+     V  F   S  E 
Sbjct: 25  DLSALRERIATMKRLLPEHCELFYAAKANA------E-APILHTLAPWVDGFEAASGGEL 77

Query: 69  VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128
             L   +  +R  +  G      ++    +L      V  L    +L +        L +
Sbjct: 78  AWLAQQSLDSR-LLFGGPGKLTRELEQACDLRVDALHVESLGELRRLAALAERRRQTLPL 136

Query: 129 DTGFN------------------RLGLSLQEALDFTHNSFNKKLGQLSLIISH-LACADD 169
               N                    GL   +         + +  +L     H L+    
Sbjct: 137 LLRMNIPLPGGAETPLMMGGKPTPFGLDPADLAPALRLIGDARWLRLRGFHFHLLSHQLS 196

Query: 170 PSSHVNSVQ--LERFRTLISHYKGIEASLASSSGIL----LGPNYHFQLTRPGISLYGGT 223
             SH+  +Q  L + +     +  ++  + +  G        P  HF        L    
Sbjct: 197 VDSHLALIQHCLTQVQRWCQQF-HLQIEMVNLGGGFGINYRDPARHFDWADFCQRL---- 251

Query: 224 DKINKSHPMQT-VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAV-AAIGYA--DGY 279
             + ++      ++  E      R   A     Y   + L     +    A+G+     +
Sbjct: 252 PAVRRACRADPWLLRFECG----RYISA--PCGYYVMEVLDIKRNLGEWFAVGHGGTHHF 305

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314
               +         V       I+   V ++G++ 
Sbjct: 306 RTPAAQGHDHPFQVVRRDTPPEIRDRRVTLVGQLC 340


>gi|254510187|ref|ZP_05122254.1| threonine aldolase, low-specificity [Rhodobacteraceae bacterium
           KLH11]
 gi|254512679|ref|ZP_05124745.1| threonine aldolase, low-specificity [Rhodobacteraceae bacterium
           KLH11]
 gi|221532678|gb|EEE35673.1| threonine aldolase, low-specificity [Rhodobacteraceae bacterium
           KLH11]
 gi|221533898|gb|EEE36886.1| threonine aldolase, low-specificity [Rhodobacteraceae bacterium
           KLH11]
          Length = 387

 Score = 39.3 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 49/225 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYN--A 55
           L +DL AL+ N   M   +         K      G              +A  L     
Sbjct: 32  LVLDLDALERNIVKMGDYA---------KA----HGMRHRVHGKMHKSVDVAK-LQEKLG 77

Query: 56  GVQDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVP 107
           G     V    V E         +  + V   +  P +   +        ++I  +  V 
Sbjct: 78  GA--IGVCCQKVSEAEVFARGGIK-DVLVSNQVRDPAKIDRLARLPKLGAHVIVCVDDVD 134

Query: 108 QLTFYSKLM-SCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI----- 160
            +   S      G      +++D G  R G+ + Q+ +                I     
Sbjct: 135 NVADLSAAAVKHGTELSVFVEIDCGAGRCGVTTTQDVVAIARAVDAADNLSFKGIQAYQG 194

Query: 161 -ISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            + H+  + +       V ++   + +   K   +E  L S  G 
Sbjct: 195 AMQHM-DSYEDRKAKLDVAIDMVESAVQGLKAVDLEPELVSGGGT 238


>gi|116691668|ref|YP_837201.1| alanine racemase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116649668|gb|ABK10308.1| alanine racemase domain protein [Burkholderia cenocepacia HI2424]
          Length = 375

 Score = 39.3 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 53  YNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT--NLIPVISSVPQ 108
             AG Q   V++++E  +   +  +  ++ +  +    GQ   +     +L  V  S+P 
Sbjct: 53  IAAGAQGITVSTLKEAEQFFAHGIRDIVYAVGMVPAKLGQALALRRQGCDLKIVADSLPA 112

Query: 109 LTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLAC 166
               +      G      ++VD   +R G+    + L     +       L  +++H   
Sbjct: 113 AHAIAAFGREHGERFDVWIEVDVDGHRSGIPPDADLLIDVGRALTDGGMLLGGVLAHAGS 172

Query: 167 ADDPSSH 173
           + +  + 
Sbjct: 173 SYEYDAP 179


>gi|182677225|ref|YP_001831371.1| alanine racemase domain-containing protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633108|gb|ACB93882.1| alanine racemase domain protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 230

 Score = 39.3 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 13/177 (7%)

Query: 53  YNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVP 107
            +AG + F    V+E +     LR   P   + ++  +   + +      + I  +    
Sbjct: 57  LSAGERIFGENRVQEAMDKWPALRPAYPGVELHLIGPLQSNKAREAVGFFDCIETVDREK 116

Query: 108 -QLTFYSKLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISHL 164
                  ++   G      +QV+TG      G+  QEA  F          +  L+IS L
Sbjct: 117 IARAIAEEIQKSGKHPRLYIQVNTGAEPQKAGVLPQEADSFIEQCQK----EFGLVISGL 172

Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
            C        +         +   +     S+  S+   L         R G +L+G
Sbjct: 173 MCIPPVDDQASPH-FALLNKIAERHGLTNLSMGMSADYELAIQLGATHVRIGSALFG 228


>gi|223994893|ref|XP_002287130.1| hypothetical protein THAPSDRAFT_261186 [Thalassiosira pseudonana
           CCMP1335]
 gi|220976246|gb|EED94573.1| hypothetical protein THAPSDRAFT_261186 [Thalassiosira pseudonana
           CCMP1335]
          Length = 417

 Score = 39.3 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 119 GVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSS----- 172
                  L++DTG++R G++     +             L  + SH   + + +      
Sbjct: 155 NEKWSVFLKLDTGYHRAGITCDNRGVQLAMMVIESSFLDLKGVYSHCGHSYNINDNAEME 214

Query: 173 HVNSVQLE---RFRTLIS-HYKGIEASLASSS 200
           H     LE   +F  L++   K  E    +S+
Sbjct: 215 HTTQEDLEMIVQFINLLAKQLKQSEKHFDTSA 246


>gi|330961171|gb|EGH61431.1| hypothetical protein PMA4326_21764 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 228

 Score = 39.3 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 52/241 (21%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      +        G   ++           Y AG++DF 
Sbjct: 4   IAANISTLEQRIRDAALAADRDPASI--------GLLAVSKTKPASDLREAYTAGLRDFG 55

Query: 62  VTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              ++E +  +                I   + + I +      + SV +L    +L   
Sbjct: 56  ENYLQEALA-KQAELSDLPLCWHFIGPIQSNKTRAIAENFAW--VHSVDRLKIAQRLSEQ 112

Query: 119 G------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + V    ++ G + Q+  D           +L  ++   A  +    
Sbjct: 113 RPEGLEPLNICIQVNVSGEASKSGCTPQDLSDLATAISALPRLKLRGLM---AIPEPTDD 169

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQLTRPGISLYGGT 223
            +   Q   F  + +    +   L      L     H             R G +L+G  
Sbjct: 170 PL--EQTASFAAVRTLQAQLGLPLD----TLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223

Query: 224 D 224
           D
Sbjct: 224 D 224


>gi|27382870|ref|NP_774399.1| ornithine decarboxylase [Bradyrhizobium japonicum USDA 110]
 gi|27356043|dbj|BAC53024.1| ornithine decarboxylase [Bradyrhizobium japonicum USDA 110]
          Length = 380

 Score = 39.3 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 22/170 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ + +    ++R    VK N A      ++   L + G   F   +V E
Sbjct: 23  LVVDLEVVRDNYQTFSKALPDSRVFYAVKANPA-----PEVLALLASMG-SCFDTATVAE 76

Query: 68  ---GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
               +                    +  I     L   + +V       K+         
Sbjct: 77  IEMALA---AGATPDRISFGNTIKKERDIARAFALGIRLFAVDCAAEVEKIARAAPGAKV 133

Query: 125 ALQV--DTG-----FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
             ++  D        +R  G   + A+D   +   +   +   I  H+  
Sbjct: 134 FCRILYDCAGAEWPLSRKFGCDPEMAVDVL-DVAKRLGLEPCGISFHVGS 182


>gi|284046325|ref|YP_003396665.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
 gi|283950546|gb|ADB53290.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
          Length = 386

 Score = 39.3 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 31/146 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYNAGV 57
           + +DL AL+ N     A +                G              +A     AGV
Sbjct: 14  VVVDLGALERNVARAGAYARE-------------HGLALWPHLKTHKTVAVAERQRAAGV 60

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ-----EKIIFDTNLIPVISSVPQLTFY 112
             F      E  +   +     + + Y +           +  +  L   + S+      
Sbjct: 61  AGFTAAKTTEAERFAAHGL-GPLLLHYPVFGAAKWERLAAVAGEAPLTVALDSLAAAEGL 119

Query: 113 -SKLMSCGVSHPYALQVDTGFNRLGL 137
              L + G S    +++D G  R G+
Sbjct: 120 DRALRARGTSAELLIELDVGMRRTGV 145


>gi|257093754|ref|YP_003167395.1| alanine racemase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046278|gb|ACV35466.1| alanine racemase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 356

 Score = 39.3 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 48/162 (29%), Gaps = 9/162 (5%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-V-KDNAYGLGCEK-IAPALYNAGVQDFFVTSV 65
           + IDL  L +N   +  +  +A   AV V K    G      +   L + G         
Sbjct: 3   VLIDLAKLDHNVAVIQEICRHAGVQAVWVTK----GCHSHPAVVDLLASRGAAVLGEVYA 58

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-Y 124
           +   ++R       + ++      Q           ++SSV      ++        P  
Sbjct: 59  DNLRRIRD-GFAGELLMIQPPSGHQLDAALACADTLLVSSVDNAAALARAARRAGRRPRL 117

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
            L VD G  R G+                   L  + + + C
Sbjct: 118 ILMVDVGNLREGVLPDAVAGVVTRILALPGVDLVGLGTSVGC 159


>gi|302888274|ref|XP_003043024.1| hypothetical protein NECHADRAFT_37272 [Nectria haematococca mpVI
           77-13-4]
 gi|256723938|gb|EEU37311.1| hypothetical protein NECHADRAFT_37272 [Nectria haematococca mpVI
           77-13-4]
          Length = 462

 Score = 39.3 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 90/318 (28%), Gaps = 64/318 (20%)

Query: 82  VLYGIH--PGQEKIIFDTN-------LIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTG 131
           +LYGI   P Q   +           +  +I    QL                 L+VDTG
Sbjct: 109 ILYGIPLPPSQIPRLATLGSELGKGSISVMIDHPSQLDSIKCFSQQTKFPARVYLKVDTG 168

Query: 132 FNRLGLSL-----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-------Q- 178
           ++R GL          ++       +   +L  + SH + +   S+   ++       Q 
Sbjct: 169 YHRAGLPPTSLNKNGLIEALAQLEAQGEAELIGLYSHSSLSYKDSTPEQAMANLEGEIQG 228

Query: 179 -LERFRTLISHYKG---IEASLASSS---GILLGPNYHFQLTRPGISLYGGTDKI--NKS 229
            LE        +     I  S+ +S     I    N    L+    SL      +   K 
Sbjct: 229 CLEAVHAQSHLFPNHEKITISVGASPQVTAIENLTNTEGDLSDTAQSLRRAIQTVSSGKP 288

Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAA----IGYAD-------- 277
             +QT +   A +  I         S         +  I+V A    + Y D        
Sbjct: 289 GGLQTTLELHAGVYSILDLQQTSTNSRRTLGSFEDEIAISVIAEVCSV-YNDKERSQPEA 347

Query: 278 -------GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF---------- 320
                  G                    K         I+G+++ +  +           
Sbjct: 348 LVAVGVLGLGREPCPSYPGWGIVNKAHLKSQTNSERRLIIGRVSQEHAIVAWEHGKDEDT 407

Query: 321 -DITDSLSIEVGDYIQIF 337
            D+     +EVG  + IF
Sbjct: 408 ADLPPLP-LEVGQSVVIF 424


>gi|13471573|ref|NP_103139.1| ornithine decarboxylase [Mesorhizobium loti MAFF303099]
 gi|14022315|dbj|BAB48925.1| ornithine decarboxylase [Mesorhizobium loti MAFF303099]
          Length = 406

 Score = 39.3 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 27/116 (23%)

Query: 35  VVKDNA------------YGLGCEK------IAPALYNAGVQDFFVTSVEEGVKLRLYTP 76
           V+K +A            Y     K      +   L  AGV  F V S  E   +R  +P
Sbjct: 27  VLKADARQFMGMFPGKTAY---AVKTNGEQIVLKTLVEAGVTAFDVASPGEFAAVRAVSP 83

Query: 77  QARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131
            A +  ++ +      K+  +   I VI S+      +KL         AL +D G
Sbjct: 84  DAEMLYMHPVKAQSDIKLALEKYGIRVI-SLDHEDEITKL----TRVVRALDIDPG 134


>gi|89899768|ref|YP_522239.1| D-serine deaminase [Rhodoferax ferrireducens T118]
 gi|89344505|gb|ABD68708.1| D-serine deaminase [Rhodoferax ferrireducens T118]
          Length = 423

 Score = 39.3 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 33/173 (19%)

Query: 9   LKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPAL----YNAGVQDFFV 62
             I  +AL +N   M   +       A          G   ++P L      AG      
Sbjct: 43  AVISRSALAHNVAWMQDYATRKGVAIAP--------HGKTTMSPQLFRQQLTAGAWGLSF 94

Query: 63  TSVEEGVKLRLYTPQA---RIFVLY-GIHPGQEKIIF-------DTNLIPVISSVPQLTF 111
            +    +       +A   RI +    +       +        D  +  ++ S+ QLT 
Sbjct: 95  AT----MYQCAVGIEAGARRIIIANQVVSDADFDALASLLASHSDLRIWFLVDSLAQLTL 150

Query: 112 YSKLM-SCGVSHPYALQVDTGF--NRLGL-SLQEALDFTHNSFNKKLGQLSLI 160
                    V  P+ + ++ G    R G  +L+EAL+           +L  +
Sbjct: 151 IEDWATRRAVLMPFDVLLEMGIPGQRTGCRTLEEALNLARALTKSTAVRLGGV 203


>gi|220931765|ref|YP_002508673.1| conserved hypothetical protein TIGR00044 [Halothermothrix orenii H
           168]
 gi|219993075|gb|ACL69678.1| conserved hypothetical protein TIGR00044 [Halothermothrix orenii H
           168]
          Length = 230

 Score = 39.3 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 101 PVISSVPQLTFY----SKLMSCGVSHPYALQVDTGF--NRLGLSLQEALDFTHNSFNKKL 154
            +I S+           +        P  +QV+     N+ G+   E  DF +     + 
Sbjct: 96  TLIHSLDSWRLARTIDKRARKNNRKIPVLVQVNVARDPNKFGIEPSEVKDFVYEVSKLEN 155

Query: 155 GQLSLIISHLACADDPSS--HVNSVQLERFRTLI 186
            ++  +++ +  +++P         Q+   + ++
Sbjct: 156 IRVEGLMTIVPYSENPEEARPYF-KQMNNLKNML 188


>gi|325294730|ref|YP_004281244.1| hypothetical protein Dester_0534 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065178|gb|ADY73185.1| protein of unknown function UPF0001 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 228

 Score = 39.3 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 24/128 (18%)

Query: 50  PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII---------FDTNLI 100
              + AG++ F    V+E  +        +I +L  I P +  +I         +  NL 
Sbjct: 43  RKAFEAGIKLFGENRVQEARE--------KIPLLSDI-PIEWHMIGHLQKNKVKYAVNLF 93

Query: 101 PVISSVPQLTFYSKLMS------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL 154
            VI SV       +L          +     +++     + G S  E  +        K 
Sbjct: 94  KVIESVDSKELADELEKRLSKIGKKLEVFIEVKLSPEETKHGCSPNEVEELARYVLELKH 153

Query: 155 GQLSLIIS 162
             L  +++
Sbjct: 154 LDLKGLMT 161


>gi|240851013|ref|YP_002972413.1| ornithine decarboxylase [Bartonella grahamii as4aup]
 gi|240268136|gb|ACS51724.1| ornithine decarboxylase [Bartonella grahamii as4aup]
          Length = 377

 Score = 39.3 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 54/176 (30%), Gaps = 20/176 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--Q 58
           H +E   L +DL  +++N+ +       +R    +K N A      +I   L + G    
Sbjct: 13  HRSEGPCLIVDLDVVRDNYLNFEKALPQSRIFYAIKANPA-----PEILRLLASLGSSFD 67

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              V  +E  + L      +           +  I     L   + +V  +    K+   
Sbjct: 68  AASVAEIE--MAL-KAGATSERISFGNTIKKERDIARAYALGVSLYAVDCVEEVEKIARV 124

Query: 119 GVSHPYALQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
                   +V T         +R  G     A+D    +    L Q   +  H+  
Sbjct: 125 APGARVFCRVLTDGKGAEWPLSRKFGCVPAMAVDVLRRAHQLGL-QAYGVSFHVGS 179


>gi|127512070|ref|YP_001093267.1| alanine racemase domain-containing protein [Shewanella loihica
           PV-4]
 gi|126637365|gb|ABO23008.1| alanine racemase domain protein [Shewanella loihica PV-4]
          Length = 233

 Score = 39.3 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 19/189 (10%)

Query: 51  ALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106
           A Y+AG + F    V+EG +    LR          +  +   + K I +      + ++
Sbjct: 45  AAYDAGQRLFGENYVQEGEEKINALRESHGDIEWHFIGPLQSNKTKSIAEHFDW--MHTL 102

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLI 160
            +     +L     SH   LQV    N      + G++  E         +     L  +
Sbjct: 103 SREKIAKRLSEQRPSHLAPLQVCIQVNVSQEQSKSGVNPDEVAHLAEIIASLPRLTLRGL 162

Query: 161 ISHLACADDP----SSHVNSVQLERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRP 215
           ++ +  A D      +  + +Q   F  L   +  ++  S+  S  +         + R 
Sbjct: 163 MA-IPTATDDVALQQAEFSQMQ-ALFEALKQQHPSLDTLSMGMSQDLEQAIAAGSTMVRI 220

Query: 216 GISLYGGTD 224
           G +++G  D
Sbjct: 221 GSAIFGARD 229


>gi|260654439|ref|ZP_05859929.1| lysine/ornithine decarboxylase [Jonquetella anthropi E3_33 E1]
 gi|260631072|gb|EEX49266.1| lysine/ornithine decarboxylase [Jonquetella anthropi E3_33 E1]
          Length = 410

 Score = 39.3 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 10/138 (7%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104
            E +     + G   F V ++ E   L          +       +  I     L     
Sbjct: 88  AEPLLKTFADLG-SGFDVATIGEIKTLLQLGVDPSRLIYANPTKPENWIAQAWKLGVTRF 146

Query: 105 SVPQLTFYSKLMSCGVSHPYALQVDTG--------FNRLGLSLQEALDFTHNSFNKKLGQ 156
           +        K+ +        L+V            ++ G S  +ALD    + +K L  
Sbjct: 147 TYDSPAEVGKIAANAPGASVWLRVRIANPGALVNLNSKFGASQADALDLLQLAKSKGL-D 205

Query: 157 LSLIISHLACADDPSSHV 174
           ++ +  H+      S   
Sbjct: 206 VAGLSFHVGSQTRDSGPY 223


>gi|323483940|ref|ZP_08089315.1| amino acid racemase [Clostridium symbiosum WAL-14163]
 gi|323693463|ref|ZP_08107672.1| amino acid racemase [Clostridium symbiosum WAL-14673]
 gi|323402778|gb|EGA95101.1| amino acid racemase [Clostridium symbiosum WAL-14163]
 gi|323502470|gb|EGB18323.1| amino acid racemase [Clostridium symbiosum WAL-14673]
          Length = 274

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 74/239 (30%), Gaps = 39/239 (16%)

Query: 120 VSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV- 177
             H   L  D G  R G +  QE  +      +    +L  I ++L C          + 
Sbjct: 35  KPHKVILMADLGDIREGFTDYQELFEVARAVESLDYIELYGIGTNLTCFSFIQPTFRKMA 94

Query: 178 QLERFRTLISHYKGIEASLAS--SSGILLGPNYHF-----QLTRPGISLYGGTDKIN--- 227
           QL      I    G +  + S  +S  L    +          R G SL  G ++ N   
Sbjct: 95  QLSELAEQIEERIGRQLEIVSGGNSATLDLMIHGGIPPKINNLRLGESLLFGRERANYQY 154

Query: 228 KSHPMQTVVTAEARIILIRK---ALAG----ELVSYGGQKKLTRDSLI-AVAAIGYADGY 279
                       A+II ++       G    +            +  + A+ AIG     
Sbjct: 155 LPDTFHDAFVLHAQIIELKYKPSLPWGTVGVDSYGIRPSFTDRGEKRLKAICAIG----- 209

Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIF 337
                  D +   +V +     + GY        + D  M DITD   S  +GD I + 
Sbjct: 210 -----KQDFDLETTVPVDSGILMLGY--------SSDHLMLDITDSIHSYHLGDIIDLI 255


>gi|240138634|ref|YP_002963106.1| putative ornithine/diaminopimelate PLP-dependent decarboxylase
           [Methylobacterium extorquens AM1]
 gi|240008603|gb|ACS39829.1| putative ornithine/diaminopimelate PLP-dependent decarboxylase
           [Methylobacterium extorquens AM1]
          Length = 388

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 37/232 (15%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE--- 67
           DL  +++N+ +      + R    VK N A      ++   L   G   F   SV E   
Sbjct: 26  DLDVVRDNYTAFARALPDTRVFYAVKANPA-----AEVLRLLAEMG-SCFDTASVAEIEM 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPY 124
            +        A           +  ++    L   +  +    ++    +          
Sbjct: 80  ALA---AGATADRVSFGNTIKKERDVVRALKLGIRLFAVDCQAEVEKIVRASEAAGIAAG 136

Query: 125 ALQV-----------DTGFNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADD 169
            +QV           D   +R  G   +     L+  H       G    + S  A  + 
Sbjct: 137 EVQVFCRILCDGAGADWPLSRKFGCEPEMAVNVLEHAHRHGLNAYGVSFHVGSQQANTEA 196

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
               + S   E FR      +GI  S+ +  G             PG+  YG
Sbjct: 197 WDGALASAS-EIFREC--ALRGIGLSMVNLGGGFPTKYLKQ---VPGVETYG 242


>gi|116253893|ref|YP_769731.1| lysine/ornithine decarboxylase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258541|emb|CAK09645.1| putative lysine/ornithine decarboxylase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 377

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 61/200 (30%), Gaps = 28/200 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+ +      ++     VK N A      ++   L   G       V  +
Sbjct: 20  LVVDLDVVRDNFDAFRHAMPDSAIYYAVKANPA-----PEVLKLLAGLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++       A           +  +     L   + +V       K+          
Sbjct: 75  EMALE---AGATAARISYGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVF 131

Query: 126 LQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            +V T         +R  G   Q A+D    +    L Q   +  H+             
Sbjct: 132 CRVLTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGL-QSYGVSFHVGSQMTK------- 183

Query: 178 QLERFRTLISHYKGIEASLA 197
            ++ + + ++  K +  SLA
Sbjct: 184 -VDAWDSALADAKRVFVSLA 202


>gi|313901905|ref|ZP_07835324.1| alanine racemase domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313467846|gb|EFR63341.1| alanine racemase domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 230

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 19/162 (11%)

Query: 46  EKIA--PALYNAGVQDFFVTSVEEGVKLR----LYTPQARIFVLYGIHPGQEKIIFDTNL 99
             +A     Y AG++DF     +E    R     +    R   +  +   + K I     
Sbjct: 37  VPVAAMREAYAAGIRDFGENRAQEA---RDKFPAFGEDVRWHFVGRLQTNKVKYIARHC- 92

Query: 100 IPVISSVPQLTFYSK----LMSCGVSHPYALQVDTGFNRL--GLSLQEALDFTHNSFNKK 153
             ++ S+ +L    +       CG   P  ++V+        GL  ++ + F       K
Sbjct: 93  -HLLHSLDRLALAQEVDRRAGRCGRVLPCLVEVNVAGEPTKAGLPPEKVVPFLQQVAGMK 151

Query: 154 LGQLSLIISHLACADDPS--SHVNSVQLERFRTLISHYKGIE 193
             Q+  +++     DDP     V     +         +G+ 
Sbjct: 152 GLQVVGLMTVAPPTDDPERVRPVFRQLRQLAEEAARQCRGLP 193


>gi|112419424|gb|AAI22307.1| LOC571260 protein [Danio rerio]
          Length = 402

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 49/210 (23%)

Query: 1   MHSNEFLR------LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCE 46
           M S EF++      L +DL  +K N   M          L  + +T              
Sbjct: 31  MASVEFIKDLCTPALVVDLDKVKRNAEGMKERCQKLQVQLRPHMKT----------H--- 77

Query: 47  KIAPALYNAGV------QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-- 98
                L  A +      +   V+++ E            I   Y +   + +   + +  
Sbjct: 78  ---KTLECADIMTGGSRRCIVVSTLAEASFYADNGYD-DILYAYPLPFDKVERCAELSER 133

Query: 99  --LIPVI--SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE--ALDFTHNSFNK 152
             L  V+  +++       + +  G      +++D    R G+   E  AL      +  
Sbjct: 134 LSLFHVLLDNTLALQELKKRPLKQGKVWSVWMKLDCDNGRAGVPHYEPAALQLAQEIWQT 193

Query: 153 KLGQLSLIISH----LACADDPSSHVNSVQ 178
           +  +L+ + +H     +C  +      + Q
Sbjct: 194 EGVELTGVYAHCGNTYSCQGEEQIKAVAQQ 223


>gi|15806761|ref|NP_295481.1| diaminopimelate decarboxylase [Deinococcus radiodurans R1]
 gi|13124089|sp|Q9RTK2|DCDA_DEIRA RecName: Full=Diaminopimelate decarboxylase; Short=DAP
           decarboxylase
 gi|6459531|gb|AAF11313.1|AE002017_4 diaminopimelate decarboxylase [Deinococcus radiodurans R1]
          Length = 379

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 32/192 (16%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPAL------YNAGVQDF-FVTSVEEGVKLR 72
           W    A  G+AR    +K N          P L        AGV  F  V S+ E ++  
Sbjct: 32  WRVQRAF-GDARIFYAMKAN----------PNLNLLRRYAAAGV-GFECV-SLGELLRAE 78

Query: 73  LYTPQARIFVLYGIHPGQEKIIFDTNL--IPVISSVPQLTFY---SKLM-----SCGVSH 122
                    +L G      +      L    V+    ++      S+++     +  VS 
Sbjct: 79  AAGAGGERMILNGPAKSDAEYAAAARLGATIVVDREEEVVLLPPGSRVLVRVNPAMTVST 138

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182
              L   T  ++ GL+ ++         +    ++  +  H+  A + +    +    R 
Sbjct: 139 HEHLATGTARSKFGLTPEQVPGTLAELRDAGH-EVLGLHMHIGSAIEQAEDFTAA-FARV 196

Query: 183 RTLISHYKGIEA 194
             L +H  G+  
Sbjct: 197 TELRAHIGGLSV 208


>gi|218530277|ref|YP_002421093.1| ornithine decarboxylase [Methylobacterium chloromethanicum CM4]
 gi|218522580|gb|ACK83165.1| Ornithine decarboxylase [Methylobacterium chloromethanicum CM4]
          Length = 388

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 37/232 (15%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE--- 67
           DL  +++N+ +      + R    VK N A      ++   L   G   F   SV E   
Sbjct: 26  DLDVVRDNYTAFARALPDTRVFYAVKANPA-----AEVLRLLAEMG-SCFDTASVAEIEM 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPY 124
            +        A           +  ++    L   +  +    ++    +          
Sbjct: 80  ALA---AGATADRVSFGNTIKKERDVVRALKLGIRLFAVDCQAEVEKIVRASEAAGIAAG 136

Query: 125 ALQV-----------DTGFNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADD 169
            +QV           D   +R  G   +     L+  H       G    + S  A  + 
Sbjct: 137 DVQVFCRILCDGAGADWPLSRKFGCEPEMAVNVLEHAHRHGLNAYGVSFHVGSQQANTEA 196

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
               + S   E FR      +GI  S+ +  G             PG+  YG
Sbjct: 197 WDGALASAS-EIFREC--ALRGIGLSMVNLGGGFPTKYLKQ---VPGVETYG 242


>gi|86138608|ref|ZP_01057181.1| Putative Ornithine decarboxylase [Roseobacter sp. MED193]
 gi|85824668|gb|EAQ44870.1| Putative Ornithine decarboxylase [Roseobacter sp. MED193]
          Length = 383

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 25/133 (18%)

Query: 36  VKDN---AYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
           VK N   A       +   L  AG+  F V S  E   +RL +P A   V++  +P +  
Sbjct: 51  VKANPHQA-------VLSNLVAAGISAFDVASPAEMAAVRLASPDA---VMHYNNPVRSM 100

Query: 93  IIFDTNLIPVIS--SVPQLTFYSKLMSCGVSHPYALQV---------DTGFNRLGLSLQE 141
              D  +   ++  SV + +   KL+        A++          D G ++ G + QE
Sbjct: 101 AEVDAGIAHDVASWSVDECSELDKLVEVPRDKEIAVRFALPVEGAAYDFG-SKFGAAPQE 159

Query: 142 ALDFTHNSFNKKL 154
           A+        +  
Sbjct: 160 AIALLKRVEAEGW 172


>gi|53804165|ref|YP_113991.1| hypothetical protein MCA1536 [Methylococcus capsulatus str. Bath]
 gi|53757926|gb|AAU92217.1| conserved hypothetical protein TIGR00044 [Methylococcus capsulatus
           str. Bath]
          Length = 229

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 30/196 (15%)

Query: 12  DLTALKNNWHSMNALSG----NARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTS 64
           +L A++    +     G    + R  AV K             +  A Y+ G ++F    
Sbjct: 7   NLQAVRQRIRAAEQACGRPEDSVRLVAVSKTQPA--------AVLRAAYDLGQREFGENY 58

Query: 65  VEEGVKLRLYTPQARIFV--LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120
           ++E ++ +       I    +  I   + +++ +      + S+ +L    +L       
Sbjct: 59  LQEAMEKQDLLADLDIVWHFIGPIQSNKTRLLAERFDW--VHSIDRLKIAQRLNDQRPPG 116

Query: 121 --SHPYALQVDTGFNRL--GLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                  +QV+ G      G++     +           +L  +++  A   D       
Sbjct: 117 RAPLNVCIQVNIGGEPTKSGVTPAAVAELAQAVAALPRLRLRGLMAIPAPTADE-----R 171

Query: 177 VQLERFRTLISHYKGI 192
            Q   FR L    +G+
Sbjct: 172 EQRAAFRRLRELLEGL 187


>gi|71737988|ref|YP_272771.1| hypothetical protein PSPPH_0468 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558541|gb|AAZ37752.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320321983|gb|EFW78079.1| hypothetical protein PsgB076_24359 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330912|gb|EFW86886.1| hypothetical protein PsgRace4_06068 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 228

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 73/240 (30%), Gaps = 50/240 (20%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           Y AG+++F 
Sbjct: 4   IAANISTLEQRIRDAALAANREPASV--------GLLAVSKTKPAGDLREAYTAGLRNFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELSDLPLCWHFIGPIQSNKTRAIAENFAW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + V    ++ G + Q+              +L  ++   A  +     
Sbjct: 114 PEALEPLNICIQVNVSGEASKSGCTPQDLPTLAAAIIALPRLKLRGLM---AIPEPTDDP 170

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQLTRPGISLYGGTD 224
             + Q   F  + +  + +  +L      L     H             R G +L+G  D
Sbjct: 171 --AAQHASFAAVRTLQEQLNLALD----TLSMGMSHDLEAAIAQGATWVRIGTALFGARD 224


>gi|222151010|ref|YP_002560163.1| hypothetical protein MCCL_0760 [Macrococcus caseolyticus JCSC5402]
 gi|222120132|dbj|BAH17467.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 220

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 7/158 (4%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVP 107
           A     AG+       +E  ++ R     A +  +  +   + K +    + +  +  + 
Sbjct: 41  AKEAMEAGICHLGENRIEGFLEKREALGDATMHFIGTLQSRKVKEVINQVDYLHSLDRLS 100

Query: 108 QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
                 K     +     + V    ++ G+   E +DF H   +    ++  +++    A
Sbjct: 101 LAKEIDKRAEKTIKCFVQVNVSDEQSKHGIKRDEVMDFIHGLASYSQIEVVGLMTMAPAA 160

Query: 168 DDPS------SHVNSVQLERFRTLISHYKGIEASLASS 199
            D S        +  +QLE     +S+    E S+  S
Sbjct: 161 ADESELRRYFKTMKQLQLEVQNAHLSYAPCTELSMGMS 198


>gi|282902034|ref|ZP_06309932.1| protein of unknown function UPF0001 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193121|gb|EFA68120.1| protein of unknown function UPF0001 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 222

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 79/244 (32%), Gaps = 42/244 (17%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGV 57
           M S+   R+ I    ++        L  + R  AV   V          ++    Y AG+
Sbjct: 1   MTSSIAERVTI----IRA------QLPPSVRLIAVSKQV--------STQLMREAYGAGI 42

Query: 58  QDFFVTSVEEG----VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
           +DF  + ++E     ++L+   P      +  +   + K   +  L   I SV  L    
Sbjct: 43  RDFGESRIQEAASKQIELQDL-PDITWHFIGHLQSNKAKKAVE--LFSWIHSVDNLHIAE 99

Query: 114 KLMSCGVSHP------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
           +L +   +          +++     + G ++ + L         +  Q+  +++     
Sbjct: 100 RLHTIAQTMGTNLYSCLQVKILPDPQKSGWTVPQLLAELPFLSQYQSLQIQGLMTIPPWG 159

Query: 168 -------DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY 220
                     +   N  Q E      ++ +  E S+  S    L       + R G  L+
Sbjct: 160 LKEEQILHVFNHTYNLAQ-EIASQKWANIEMRELSMGMSGDYELAVKAGATMVRLGTILF 218

Query: 221 GGTD 224
           G   
Sbjct: 219 GNRP 222


>gi|332974663|gb|EGK11580.1| YggS family pyridoxal phosphate enzyme [Kingella kingae ATCC 23330]
          Length = 230

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 13/131 (9%)

Query: 103 ISSVPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ 156
           + ++  +    +L +        +     + +    N+ G++ ++ LD  H        +
Sbjct: 97  LHTLDSVKLARRLSTQRPAQLPDLQVCIEINIANEINKHGIAPEQMLDLAHEVMALPKLK 156

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQ 211
           L  ++       +    V   Q  R   L+   + I       S+  S  +         
Sbjct: 157 LRGLMC--VAQANVGDDVLQQQFGRMNDLLQQLRQIAPDADTLSMGMSGDLECAVACGAT 214

Query: 212 LTRPGISLYGG 222
           + R G +++GG
Sbjct: 215 MVRVGTAIFGG 225


>gi|163851469|ref|YP_001639512.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium extorquens PA1]
 gi|163663074|gb|ABY30441.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium extorquens PA1]
          Length = 388

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 65/232 (28%), Gaps = 37/232 (15%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE--- 67
           DL  ++ N+ +      + R    VK N A      ++   L   G   F   SV E   
Sbjct: 26  DLDVVRENYTAFARALPDTRVFYAVKANPA-----AEVLRLLAEMG-SCFDTASVAEIEM 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPY 124
            +        A           +  ++    L   +  +    ++    +          
Sbjct: 80  ALA---AGATADRVSFGNTIKKERDVVRALKLGIRLFAVDCQAEVEKIVRASEAAGIAAG 136

Query: 125 ALQV-----------DTGFNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADD 169
            +QV           D   +R  G   +     L+  H       G    + S  A  + 
Sbjct: 137 EVQVFCRILCDGAGADWPLSRKFGCEPEMAVNVLEHAHRHGLNAYGVSFHVGSQQANTEA 196

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
               + S   E FR      +GI  S+ +  G             PG+  YG
Sbjct: 197 WDGALASAS-EIFREC--ALRGIGLSMVNLGGGFPTKYLKQ---VPGVETYG 242


>gi|329888519|ref|ZP_08267117.1| lysine/ornithine decarboxylase [Brevundimonas diminuta ATCC 11568]
 gi|328847075|gb|EGF96637.1| lysine/ornithine decarboxylase [Brevundimonas diminuta ATCC 11568]
          Length = 398

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 25/149 (16%)

Query: 36  VKDNAYGLGCEK---IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQE 91
           VK N           I   L   GV  F V S+ E   +R  +P AR+  ++ +   G  
Sbjct: 25  VKAN-------PSRWIIEVLVENGVNAFDVASLAEIELVRSVSPNARLAFMHPVKSRGAI 77

Query: 92  KII-FDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGF----------NRLGLSL 139
           K    D  +   +  +       K L S G +    L V  G            + G+S 
Sbjct: 78  KAAYADHGVRTFV--LDSHDELDKILESTGHADDLNLIVRMGVSADGAAYSLSGKFGVSP 135

Query: 140 QEALDFTHNSFNKKLGQLSLIISHLACAD 168
            +A      + +        +  H+    
Sbjct: 136 DQAPALLQATRHAVKDGQMGVSFHVGSQC 164


>gi|223936213|ref|ZP_03628126.1| alanine racemase domain protein [bacterium Ellin514]
 gi|223895075|gb|EEF61523.1| alanine racemase domain protein [bacterium Ellin514]
          Length = 368

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 50/168 (29%), Gaps = 28/168 (16%)

Query: 9   LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +D  AL+ N   M A        L  + ++            C KI      AG    
Sbjct: 22  LLLDADALQANIDRMAAFFVNRPSGLRPHFKS----------HKCTKIVRLQMQAGAVGI 71

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL------IPVISSVPQLTFYSK 114
               + E   L     +  I +   I  G  KI     L      I  + S       S 
Sbjct: 72  TCAKLGEAEVLADAGIR-EILIANQIV-GHVKIARLIQLAKRAAPIVAVDSEENARMLSA 129

Query: 115 LM-SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLI 160
              +  V     ++VD G NR G+     AL  T    +    +   +
Sbjct: 130 AASAANVEIRALVEVDIGLNRCGVKSGAPALALTRLIASLPGIKFEGL 177


>gi|166368333|ref|YP_001660606.1| hypothetical protein MAE_55920 [Microcystis aeruginosa NIES-843]
 gi|166090706|dbj|BAG05414.1| hypothetical protein MAE_55920 [Microcystis aeruginosa NIES-843]
          Length = 219

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 70/206 (33%), Gaps = 33/206 (16%)

Query: 20  WHSMN-ALSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFFVTSVEEGV----K 70
             S+   L  + R  AV          ++++       Y AGV+DF  + ++E +    +
Sbjct: 7   IESIRLTLPPSTRLIAV---------SKQVSSDYIRQAYRAGVRDFAESKLQEAISKQQE 57

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMS---CGVSHPYAL 126
           L+   P      +  +   + + + +  +LI  + S+       +L +           +
Sbjct: 58  LKDL-PDIYWHFIGHLQANKARKVLESFDLIHSLDSLKLAQRLDRLAAELEINPQVLLQV 116

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           +V    ++ G    E +       N +  ++  +++ L              L  F    
Sbjct: 117 KVIPDPDKFGWDTDELIADIPALVNCQQLKIQGLMTILPQGLSAGEK-----LAAFEKTS 171

Query: 187 SHYKGIEASLASSSGILLGPNYHFQL 212
              + IE    +SS  L  P+    +
Sbjct: 172 DLAQIIE----NSS-SLCLPHLSMGM 192


>gi|126737976|ref|ZP_01753706.1| hypothetical protein RSK20926_20082 [Roseobacter sp. SK209-2-6]
 gi|126721369|gb|EBA18073.1| hypothetical protein RSK20926_20082 [Roseobacter sp. SK209-2-6]
          Length = 382

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 34/174 (19%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV--------VKDNAYGLGCEKIAPALYNAG---V 57
           L +D   ++ N   +       +   V        VK          IA  +   G    
Sbjct: 16  LVVDEAKMRRN---IKRQEKRVQALGVTLRPHLKTVK-------SVDIARQMLTGGTGPA 65

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQ-LTF 111
               V+++EE         +  I+ + GI P +   + +      +L  ++ S  Q    
Sbjct: 66  T---VSTLEEAEIFAAAGIRDIIYAV-GIVPQKLDRVAEIRARGCDLAVLLDSPEQAKAV 121

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH--NSFNKKLGQLSLIISH 163
            S     G + P  ++VD   +R G +   A +     +        L  +++H
Sbjct: 122 ASASRKHGQAIPALIEVDCDGHRSGTAPG-APELIEIGHILEGGGACLRGVLTH 174


>gi|332976336|gb|EGK13192.1| cell division protein YlmE [Desmospora sp. 8437]
          Length = 235

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 60/178 (33%), Gaps = 32/178 (17%)

Query: 13  LTALKNNWHSMNALSG----NARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
           L  ++ N       +G         AV   V          +    + + G+ D   +  
Sbjct: 11  LDQVRENIQKACGRAGRNPAEVNVIAVTKYV--------DVETTRRVLDVGLTDIGESRA 62

Query: 66  EEGV----KLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKL----M 116
           +E V    +L          V + I H  + K+         + S+ + +   +L     
Sbjct: 63  QEAVPKWEQLGERG------VWHFIGHLQRNKVKAVVGRFTYVHSLDRYSLARELNNRSE 116

Query: 117 SCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
           + G      +QV+     ++ GL  +E +DF   +      QL+ +++     +DP  
Sbjct: 117 ALGQPTRCFIQVNVAGEESKRGLKPEEVIDFAREAAELPWLQLAGLMTMAPFTEDPEE 174


>gi|330872136|gb|EGH06285.1| hypothetical protein Pgy4_01140 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 228

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 72/240 (30%), Gaps = 50/240 (20%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           Y AG+++F 
Sbjct: 4   IAANISTLEQRIRDAALAANREPASV--------GLLAVSKTKPAGDLREAYTAGLRNFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELSDLPLCWHFIGPIQSNKTRAIAENFAW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + V    ++ G + Q+              +L  ++   A  +     
Sbjct: 114 PEALEPLNICIQVNVSGEASKSGCTPQDLPTLAAAIIALPRLKLRGLM---AIPEPTDDP 170

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQLTRPGISLYGGTD 224
             + Q   F  + +  + +   L      L     H             R G +L+G  D
Sbjct: 171 --AAQHASFAAVRTLQEQLNLGLD----TLSMGMSHDLEAAIAQGATWVRIGTALFGARD 224


>gi|50059369|gb|AAT69409.1| alanine racemase [Borrelia burgdorferi N40]
          Length = 52

 Score = 38.9 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 23 MNALSGNARTAAVVKDNAYGLGCEKI 48
          +    G     A +K +AYG G   I
Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINI 52


>gi|302384357|ref|YP_003820180.1| Orn/DAP/Arg decarboxylase 2 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194985|gb|ADL02557.1| Orn/DAP/Arg decarboxylase 2 [Brevundimonas subvibrioides ATCC
           15264]
          Length = 421

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 78/267 (29%), Gaps = 50/267 (18%)

Query: 36  VKDNAYGLGCEK---IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI--HPGQ 90
           VK N           +   L  AGV  F V S+ E   +R  +   R+  ++ +      
Sbjct: 47  VKAN-------PSRWVIETLVEAGVTGFDVASLAEIELVRSVSTDVRLAFMHPVKSRSAI 99

Query: 91  EKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGF----------NRLGLSL 139
            K  FD  +     S+       K++   G ++   L V               + G+S 
Sbjct: 100 TKAYFDHGVRT--FSLDCEDELQKILDATGGANDLNLLVRMAVSADGAAYSLSGKFGVST 157

Query: 140 QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS 199
            +A      +       L  +  H+       +   +   +  R +     G+   +   
Sbjct: 158 DQAPSLLLATRRAVKDGLMGVCFHVGSQCMRPTAYQAAMAQVGRAITRA--GVIVDIVDI 215

Query: 200 SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV--------------VTAEARIILI 245
            G    P+ +  +  P +S Y   D I++      V              V   + I+  
Sbjct: 216 GG--GFPSVYPGMVPPDMSEY--ADAIHRGFNEMPVSETTELWCEPGRALVAESSSILAR 271

Query: 246 RKALAGEL-----VSYGGQKKLTRDSL 267
                G+       SYG     T    
Sbjct: 272 VDLRKGDALYLNDGSYGSLFDATHSRW 298


>gi|253996004|ref|YP_003048068.1| alanine racemase domain-containing protein [Methylotenera mobilis
           JLW8]
 gi|253982683|gb|ACT47541.1| alanine racemase domain protein [Methylotenera mobilis JLW8]
          Length = 232

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQ 156
           + SV +L    +L     S P  LQV    N      + G+  ++              +
Sbjct: 96  VHSVDRLKIAQRLNEARSSMPLPLQVCIQVNVSNEDTKSGVPPEQLEALASAISALPHLK 155

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI 192
           L  ++     A    +   + Q+ +F+ +   Y  +
Sbjct: 156 LRGLM-----AIPAPTTETAKQIAQFKQVRECYDAL 186


>gi|290961726|ref|YP_003492908.1| hypothetical protein SCAB_73891 [Streptomyces scabiei 87.22]
 gi|260651252|emb|CBG74374.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 400

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 48/188 (25%), Gaps = 55/188 (29%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA------PALYN-------- 54
             +DL A   N   +   +G                  ++A       AL          
Sbjct: 23  AIVDLDAFDANADDLRRRAGGKPI--------------RVASKSVRCRALLERVLARDGF 68

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD--------TNLIPVISSV 106
            G+  F   ++ E + L     +    VL            +          +  ++   
Sbjct: 69  EGIMSF---TLAESLWLARSGFED---VLLAYPSADHDAFAELAGDPKLAAAVTVMVDDP 122

Query: 107 PQLTFYSKLMSCGVS-HPYALQVDT------GFNRLGL------SLQEALDFTHNSFNKK 153
            QL         G       L++DT      G  R+G       S  +  D       + 
Sbjct: 123 AQLQLIDDARRGGTEVVRVCLELDTSLKLLGGRVRVGALRSPLHSPAQVADMARAIAERP 182

Query: 154 LGQLSLII 161
             +L  I+
Sbjct: 183 GFKLVGIM 190


>gi|268317716|ref|YP_003291435.1| alanine racemase domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262335250|gb|ACY49047.1| alanine racemase domain protein [Rhodothermus marinus DSM 4252]
          Length = 244

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 16/156 (10%)

Query: 46  EKIAPALYNAGVQDFFVTSVEE----GVKL--RLYTPQARIFVLYGIHPGQEKIIFDTNL 99
             +  A Y AG++ F    V+E       L  R+   +    ++  +   + + +     
Sbjct: 48  VAVVQAAYEAGLRHFGENRVQELVAKAAVLPGRIEGGEVTWHMIGHLQRNKARDVVAHAD 107

Query: 100 IPVISSVPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153
              + S+  L     L          +     + V     + GL      DF       +
Sbjct: 108 W--LHSLDNLRLAETLERRAAMADRVLPCFVEVNVSGEPTKFGLEPDAVHDFLDALAPFE 165

Query: 154 LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
             ++  +++  A A+DP       Q    R L   Y
Sbjct: 166 HLEIVGLMTLAAPAEDPE--AVRPQFRLLRRLAETY 199


>gi|300693403|ref|YP_003749376.1| diaminopimelate decarboxylase protein (lysa) [Ralstonia
           solanacearum PSI07]
 gi|299075440|emb|CBJ34735.1| putative diaminopimelate decarboxylase protein (lysA) [Ralstonia
           solanacearum PSI07]
          Length = 413

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 32/188 (17%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           DL  L+     ++A L         +K N+       +  A  +  V  + V S+ E V+
Sbjct: 23  DLDHLRERARRLSAMLPAGCELFYAIKANS----DAPVL-AALDGAVAGYEVASLGEVVR 77

Query: 71  LRLYTPQARIFVLYGIHPGQEKI--IFDTN--LIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            R     ARI V  G     +++    +    LI   S +      +     G      L
Sbjct: 78  AREVGGHARI-VFGGPGKTDDELQGALERGVELIHAESELQLRRLDAIARRMGRRARVLL 136

Query: 127 QVD--------TGF------------NRLGLSLQEALDFTHNSFNKKLGQLSLIISH-LA 165
           +V+         G              + G+           +      ++  +  H L+
Sbjct: 137 RVNPNPLSADAAGRRPEGTLTMGGQPTQFGIEEDAVPGLIRLARTLPGVEVVGLHLHALS 196

Query: 166 CADDPSSH 173
              D  SH
Sbjct: 197 NNLDADSH 204


>gi|158338463|ref|YP_001519640.1| hypothetical protein AM1_5365 [Acaryochloris marina MBIC11017]
 gi|158308704|gb|ABW30321.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 228

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 30/220 (13%)

Query: 24  NALSGNARTAAVVKDNAYGLGCEKIA--PALYNAGVQDFFVTSVEEGVK-------LRLY 74
            +L G+ R  AV K   Y       A     Y+AG++DF  + V+E ++       L   
Sbjct: 18  RSLPGSVRLIAVSK---Y----MPAALIREAYDAGLRDFGESRVQEAIQKQAELQDLSEL 70

Query: 75  TPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGVSHP---YALQVDT 130
           T      ++  +   + K+     + I  + S+      ++L+      P     ++   
Sbjct: 71  TWH----LIGHLQSNKAKLAVRHFDWIHSVDSLALAQRLNRLVESEQHSPQLCLQVKPLP 126

Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS----VQLER--FRT 184
             ++ G +                     +++ L         +N+     QL +   + 
Sbjct: 127 DPDKFGWTFAGLKADLPALKACAHLHWRGLMTILPMGLSSHEILNAFHETQQLAQDITQQ 186

Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
               +   E S+  S+   L       + R G  L+G   
Sbjct: 187 FPEDFTLHELSMGMSNDYQLAVQAGATMVRVGRRLFGDRP 226


>gi|327541892|gb|EGF28401.1| iduronate-2-sulfatase [Rhodopirellula baltica WH47]
          Length = 488

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 26/106 (24%)

Query: 277 DGYPLTLSGLDSEHSPSVFL---------GGKGFIKGYMVPI------LGKITMDMTMFD 321
           DG P   S      + +              +  I GY   +      +GK+       D
Sbjct: 256 DGLPYARSSWGELKNYTDIPAKTDMLDDEKTRELIHGYRAAVSYMDAQVGKV------LD 309

Query: 322 ITDSLSIEVGDYIQIFGPDIK-LDDVALASGTTNYDLLVRIGTRYA 366
             ++        + ++G     + D       TNY++      R  
Sbjct: 310 ALEANGQRENTIVVLWGDHGWYVGDFGDWCKHTNYEIAT----RVP 351


>gi|298292611|ref|YP_003694550.1| alanine racemase domain protein [Starkeya novella DSM 506]
 gi|296929122|gb|ADH89931.1| alanine racemase domain protein [Starkeya novella DSM 506]
          Length = 391

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 51/226 (22%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYNAGV 57
           L +DL AL+ N   M   +         K      G              +   L  A  
Sbjct: 36  LILDLDALERNIRKMGDYA---------KA----HGMRHRSHGKMHKSVDV-QKLQEALG 81

Query: 58  QDFFVTS--VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD---------TNLIPVISSV 106
               V    V E         +  I V    +  ++    D           +   +  V
Sbjct: 82  GSVGVCCQKVAEAEVFARGGIK-DILV---TNEVRDAAKIDRLARLPKFGATVTVCVDDV 137

Query: 107 PQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI---- 160
             +   S      G      +++D G  R G++ +EA ++    +          I    
Sbjct: 138 KNVADISAAAVKHGTELGIFVEIDCGAGRCGVTTKEAVVEIAKAAAAAPNLTFKGIQAYQ 197

Query: 161 --ISHLACADDPSSHVNSVQLERFRTLISHY--KGIEASLASSSGI 202
             + H+  + +         + + +  ++    +G++    S  G 
Sbjct: 198 GAMQHI-DSYEARKEKLDAAIAQVKEAVAALEAEGLKPEFVSGGGT 242


>gi|259417981|ref|ZP_05741900.1| metal-activated pyridoxal enzyme [Silicibacter sp. TrichCH4B]
 gi|259346887|gb|EEW58701.1| metal-activated pyridoxal enzyme [Silicibacter sp. TrichCH4B]
          Length = 387

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 63/225 (28%), Gaps = 49/225 (21%)

Query: 9   LKIDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLG----CEKIAPALYN--AGVQ 58
           L +DL AL+ N   M     A     R            G       +A  L     G  
Sbjct: 32  LVLDLDALERNIKKMGDYARAHGMRHRV----------HGKMHKSVDVAK-LQESLGGA- 79

Query: 59  DFFVTS--VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD---------TNLIPVISSVP 107
              V    V E         +  I V    +  Q+    D            I  +  + 
Sbjct: 80  -VGVCCQKVSEAEVFARGGIK-DILV---SNQVQDAAKIDRLARLPKLGARTIVCVDDLA 134

Query: 108 QLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI----- 160
            +   S      G      +++D G  R G++  EA ++           + + I     
Sbjct: 135 NVADLSAGAQKHGTEIECFVEIDCGAGRCGVTTTEAVVEIAQAIDAAAGLKFTGIQAYQG 194

Query: 161 -ISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            + H+  + +       + + +    +   K  G+   L S  G 
Sbjct: 195 AMQHI-DSYEGRKEKLDIAIAQVADAVEGLKAAGLAPELVSGGGT 238


>gi|16119457|ref|NP_396163.1| D-serine deaminase [Agrobacterium tumefaciens str. C58]
 gi|15161995|gb|AAK90604.1| D-serine deaminase [Agrobacterium tumefaciens str. C58]
          Length = 423

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 35/206 (16%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKI--APA---------LYNAGV 57
           L +DL   + N           R  A+V       G +    A           L  AG 
Sbjct: 38  LTVDLAVYRGN---------RDRFLALVSA----HGAKAAPHAKTPMCPEIAIDLIEAGA 84

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFV---LYGIHPGQEKIIFD-----TNLIPVISSVPQL 109
               V  + +   L      + I +   + G+   +   +         +I  + SV   
Sbjct: 85  WGATVADLFQAEVLLKAGV-SNILIANQIGGLTSARRLRMLADAFPKAEIICCVDSVQAS 143

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIIS-HLACA 167
               +     V  P+ + ++ G  R G  +L  A D            L+ + +   + +
Sbjct: 144 ANLVQAFQGRVDAPFKVFIEVGVGRTGARTLNVAKDIIDTISTSAEIVLAGVSTYEGSVS 203

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIE 193
            + S  +++     F  L      I 
Sbjct: 204 GETSEALDANMAALFDLLTDSLASIR 229


>gi|307306768|ref|ZP_07586509.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
 gi|306902059|gb|EFN32657.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
          Length = 352

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 97/343 (28%), Gaps = 76/343 (22%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCE-----------KIAPALYNAGV 57
           + +DL   + N  +  A +                G             ++A    +AG 
Sbjct: 10  VLVDLDIARRNVLAFQAYADR-------------HGIRVRPHIKTHKLPQMAELQLDAGA 56

Query: 58  QDFFVTS--VEEGVKLRLYTPQ-ARIFV---LYGIHPGQEKIIFDTNLIPVISSVPQLT- 110
               +T   V E   +     +   + +   L G    +   +   N    +S V     
Sbjct: 57  --IGITCQKVTEAEAMVDGGARIKDVLITYNLLG--EQKLARLARLNERVTVSVVADNAT 112

Query: 111 ----FYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLA 165
                 +     G      ++ +TG +R G+ +  EA             +   +++   
Sbjct: 113 VVDGLAAFFADAGKPLTVLVECNTGADRCGVGTPSEAARLARRIAEAPGLRFGGLMT--- 169

Query: 166 CADDPSSHVNSVQLERFR---TLISHYKGIEASLASSSGI------LLGPNYHFQLTRPG 216
               P+     VQ   F      +   +G+E    +S G          P       RPG
Sbjct: 170 --YPPADGAARVQ--AFMSDAKRLIEAEGLEVPCITSGGTPGMMQAAEAPIASE--HRPG 223

Query: 217 ISLYGGTDKINK--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI- 273
             +Y     + +  +      +T  A ++ +             +  +   S +  + + 
Sbjct: 224 TYIYNDRSLVARGVASWEDCALTVLATVVSV---------PSENRAIIDAGSKVLTSDLL 274

Query: 274 ---GYADGYPL---TLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
              GY          +  L  EH   V  G  G   G  V I+
Sbjct: 275 GLTGYGHVLGRNDIRIDQLSEEHGRLVSDGPIGLHVGEQVRIV 317


>gi|40063551|gb|AAR38340.1| decarboxylase, pyridoxal-dependent [uncultured marine bacterium
           582]
          Length = 375

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 17/129 (13%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF 95
           VK NA       +   L +AG+  F V S  E   +R   P A   VL+  +P +  I  
Sbjct: 51  VKANA----SSLVLDNLASAGLTTFDVASPAEMQTVRAALPSA---VLHYHNPVRSLIEI 103

Query: 96  DTNLIPVISS--VPQLTFYSKLMSCGVSHPYALQVDTGFNR--------LGLSLQEALDF 145
                  + S  V   T   KL +       A+++               G   ++ +  
Sbjct: 104 AEAKRFGVQSWAVDSQTELDKLGALATGTEIAVRLHIPVAGAAYDFGEKFGAGPEQVVAL 163

Query: 146 THNSFNKKL 154
                 + L
Sbjct: 164 LRRVKQRGL 172


>gi|330873946|gb|EGH08095.1| hypothetical protein PSYMP_05414 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 228

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 32/231 (13%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           Y AG++DF 
Sbjct: 4   IAANISTLEQRIRDAALAAKRDPASV--------GLLAVSKTKPAGDLREAYTAGLRDFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELADLPLCWHFIGPIQSNKTRAIAENFAW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + V    ++ G + Q+              +L  +++     DDP++ 
Sbjct: 114 PESLEPLNICVQVNVSGEASKSGCAPQDLPALAAAISALPRLKLRGLMAIPEPTDDPAAQ 173

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
             S    R      +      S+  S  +           R G +L+G  D
Sbjct: 174 AASFAAVRTLQAQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARD 224


>gi|319896535|ref|YP_004134728.1| hypothetical protein HIBPF01320 [Haemophilus influenzae F3031]
 gi|317432037|emb|CBY80385.1| conserved hypothetical protein [Haemophilus influenzae F3031]
          Length = 233

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 45/242 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +      A           +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKT-------KPISEILSAYQAGQTAFG 54

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-----PGQEKIIFDT-NLIPVISSVPQLTFYSKL 115
              V+EGV+ ++   +++   L           + +++ +  + +  +         ++ 
Sbjct: 55  ENYVQEGVE-KIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQ 113

Query: 116 M---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ G+  +E L    +  N     L  ++   A       
Sbjct: 114 RPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLM---AIPAPTDK 170

Query: 173 HVNSVQLERFRTLISHYKGIEASLAS------SSGILLGPNY----HFQLTRPGISLYGG 222
                Q   FR +   ++ ++ +L +      S G+             + R G +++G 
Sbjct: 171 I--PEQEAVFRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGA 228

Query: 223 TD 224
            D
Sbjct: 229 RD 230


>gi|119386626|ref|YP_917681.1| alanine racemase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119377221|gb|ABL71985.1| D-3-hydroxyaspartate aldolase [Paracoccus denitrificans PD1222]
          Length = 387

 Score = 38.9 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 51/226 (22%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYNAGV 57
           L +DL AL+ N   M   +         K      G              +   L  +  
Sbjct: 32  LILDLDALERNIRKMGDYA---------KA----HGMRHRSHGKMHKSVDV-QKLQESLG 77

Query: 58  QDFFVTS--VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD---------TNLIPVISSV 106
               V    V E         +  + V    +  +E    D           +   +  V
Sbjct: 78  GSVGVCCQKVSEAEAFARGGIK-DVLV---TNEVREPAKIDRLARLPKTGATVTVCVDDV 133

Query: 107 PQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI---- 160
             +   S      G      +++D G  R G++ +EA ++    +          I    
Sbjct: 134 QNIADLSAAAQKHGTELGIFVEIDCGAGRCGVTTKEAVVEIAKAAAAAPNLTFKGIQAYQ 193

Query: 161 --ISHLACADDPSSHVNSVQLERFRTLISHY--KGIEASLASSSGI 202
             + H+   +D  + +++  + + +  +     +G+     S  G 
Sbjct: 194 GAMQHMDSFEDRKAKLDAA-IAQVKEAVDALEAEGLAPEFVSGGGT 238


>gi|242240514|ref|YP_002988695.1| alanine racemase domain protein [Dickeya dadantii Ech703]
 gi|242132571|gb|ACS86873.1| alanine racemase domain protein [Dickeya dadantii Ech703]
          Length = 423

 Score = 38.9 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 24/162 (14%)

Query: 14  TALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALY-----NAGVQDFFVTSVE 66
           +AL++N   + A         AA         G   ++PA+        G       +  
Sbjct: 55  SALEHNLRQLAAFCRENGVLLAA--------HGKTSMSPAILRRAITEGGAWGLSAATPA 106

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIF-------DTNLIPVISSVPQLTFYSKLMSCG 119
           +   LR +  +  +     + P   + +        + + +  + S+  +   S+ +   
Sbjct: 107 QVRALRQFGIRNVLLANELVDPAGIRWVAQYQQQHPEHDFLCYVDSLQGVKLLSQHLGS- 165

Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI 160
                 L++     R G  SLQ+AL            QL  +
Sbjct: 166 TPISVLLEMSVSGGRTGCRSLQDALAIARAVAATPSLQLVGV 207


>gi|260427217|ref|ZP_05781196.1| Orn/DAP/Arg decarboxylase 2 [Citreicella sp. SE45]
 gi|260421709|gb|EEX14960.1| Orn/DAP/Arg decarboxylase 2 [Citreicella sp. SE45]
          Length = 375

 Score = 38.9 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 21/132 (15%)

Query: 36  VKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94
           VK N A      ++   L  AG++ F V S  E   +R + P A   VL+  +P + +  
Sbjct: 51  VKANPA-----PEMLDGLVAAGIRAFDVASPAEMALVRAHCPDA---VLHYHNPVRSEAE 102

Query: 95  FDTNLIP--VISSVPQLTFYSKLMSCGVSHPYALQV---------DTGFNRLGLSLQEAL 143
            D  L    V  SV ++    KL         A+++         D G    G   + A 
Sbjct: 103 IDAGLAHGCVSWSVDRMRELEKLSRLPKGTEIAVRLKLPVTGAAYDFGAK-FGAEPRLAQ 161

Query: 144 DFTHNSFNKKLG 155
           +           
Sbjct: 162 ELLERVAEMGFV 173


>gi|148255000|ref|YP_001239585.1| putative amino acid processing enzyme-like protein [Bradyrhizobium
           sp. BTAi1]
 gi|146407173|gb|ABQ35679.1| putative amino acid processing enzyme-related protein (aldolase or
           racemase) [Bradyrhizobium sp. BTAi1]
          Length = 359

 Score = 38.9 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 65/209 (31%), Gaps = 32/209 (15%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
             ID+  ++ N   + A    A    V     +K         ++A     AG Q   +T
Sbjct: 18  AVIDMDRVERNIARIQAQCAAA---GVANRPHIKT----HKSPELAKLQIAAGAQ--GIT 68

Query: 64  S--VEEGVKLRLYTPQARIFVLYGIHPGQ-----EKIIFDTNLIPVISSVPQLTFY-SKL 115
              + E   +        + + Y +   +       +    ++     +   +       
Sbjct: 69  CQKIGEAEIMAEAGID-NVLISYNLIGEEKMARLAALQAKADMTVAADNPVVVAGLPEAA 127

Query: 116 MSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
              G +    ++ DTG  R G+    EA+         +  + +  +        P+   
Sbjct: 128 KQSGRTLSVVVECDTGRKRAGVETPAEAIQLARQIKVSEGLRFAGFM------LYPTETG 181

Query: 175 NSVQLERFRTLIS--HYKGIEASLASSSG 201
                  F   ++    +G++A++ S+ G
Sbjct: 182 WDEAQRFFDEALAGVRAEGLDAAIVSTGG 210


>gi|269837214|ref|YP_003319442.1| alanine racemase domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786477|gb|ACZ38620.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 239

 Score = 38.5 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 17/123 (13%)

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL----TFY 112
           V   F   +EEG  L L             H    K      L  +I SV +        
Sbjct: 76  VSTLFTAVLEEGATLHLIG-----------HLQTNKARDAVRLFSLIHSVDRPGLVDALQ 124

Query: 113 SKLMSCGVSHPYALQVDTGFN--RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
            +    G      LQV+      + G + +EA     ++  +    +  +++     DDP
Sbjct: 125 RRAEREGKRQDILLQVNVAREEQKHGCAPEEAEALLRHAAAQPNLHVRGLMTIAPLVDDP 184

Query: 171 SSH 173
              
Sbjct: 185 EET 187


>gi|160892651|ref|ZP_02073441.1| hypothetical protein CLOL250_00181 [Clostridium sp. L2-50]
 gi|156865692|gb|EDO59123.1| hypothetical protein CLOL250_00181 [Clostridium sp. L2-50]
          Length = 231

 Score = 38.5 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 16/136 (11%)

Query: 100 IPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKK 153
           + +I SV  +     +      H   ++V    N      + G+S++E  D      +  
Sbjct: 92  VCLIHSVDSVNLAKTIEKEAAKHDVIVKVLIEVNVAGEESKFGVSVEETEDLIMQIKDFP 151

Query: 154 LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEASLAS--SSGILLGPNYH 209
             Q+  +++     DDP    N V   R R L+     K I+    +  S G+       
Sbjct: 152 HIQIEGLMTIAPFVDDPED--NRVHFRRLRELLLDINSKNIDNVHMNVLSMGMTNDYEVA 209

Query: 210 FQ----LTRPGISLYG 221
            +    + R G  ++G
Sbjct: 210 VEEGATMVRVGTGIFG 225


>gi|16265944|gb|AAL16678.1|AF358689_1 putative alanine racemase [Helicobacter hepaticus]
          Length = 81

 Score = 38.5 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 119 GVSHPYALQVDTG-FNRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
           G   P  +++++G  +R G+  S  +  +           ++  +++H        +   
Sbjct: 1   GKKLPIHIKLNSGGMDRNGIDLSTDKGKESAVKLATLPHLKIKGLMTHFPY---DDTSKV 57

Query: 176 SVQLERFRTLISHY 189
              L+ F       
Sbjct: 58  KENLKHFEEDTDFL 71


>gi|59711037|ref|YP_203813.1| hypothetical protein VF_0430 [Vibrio fischeri ES114]
 gi|59479138|gb|AAW84925.1| predicted enzyme [Vibrio fischeri ES114]
          Length = 236

 Score = 38.5 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 41/205 (20%)

Query: 52  LYNAGVQDFFVTSVEEGVK-------------LRLYTPQARIFVLYGIHPGQEKIIFDTN 98
              AG + F    V+EG++             L  +           I   + + I +  
Sbjct: 46  AIEAGQRIFGENYVQEGIEKVQYFQKQHSTTSLEWHFI-------GPIQSNKTRPIAEHF 98

Query: 99  LIPVISSVPQLTFYSKLMSCGVS----HPYALQVDTGF--NRLGLSLQEALDFTHNSFNK 152
               + SV +L    +L     S        +QV+T    ++ G + +E ++        
Sbjct: 99  DW--VHSVERLKIAQRLNDQRPSELGELNVLIQVNTSSEESKSGTTAEEVMELAAAINKM 156

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-------SHYKGIEA-SLASSSGILL 204
               L  ++S  A   +      + QL  F+ L        + Y  I+  S+  S  +  
Sbjct: 157 PNLTLRGLMSIPANVSN-----YAEQLAAFKQLTSIQNQLRAQYPQIDTLSMGMSGDMDA 211

Query: 205 GPNYHFQLTRPGISLYGGTDKINKS 229
                  + R G +++G  D  NK 
Sbjct: 212 AIEAGSTMVRIGTAIFGARDYKNKE 236


>gi|27364896|ref|NP_760424.1| hypothetical protein VV1_1525 [Vibrio vulnificus CMCP6]
 gi|27361041|gb|AAO09951.1| protein of unknown function [Vibrio vulnificus CMCP6]
          Length = 236

 Score = 38.5 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 76/194 (39%), Gaps = 19/194 (9%)

Query: 52  LYNAGVQDFFVTSVEEGVK-LR---LYTPQARI---FVLYGIHPGQEKIIFDTNLIPVIS 104
            Y+AG + F    V+EGV+ +R      P+  I   F+   I   + +++ +      + 
Sbjct: 46  AYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEWHFI-GPIQSNKSRLVAEHFAW--VH 102

Query: 105 SVPQLTFYSKLMSCGV----SHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLS 158
           ++ +     +L              +QV+T    ++ G+S +E               L 
Sbjct: 103 TIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLR 162

Query: 159 LIISHLACADDPSSHVNSVQ--LERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRP 215
            ++S     DD +S + + Q   E  + L+  Y  ++  S+  S  +         + R 
Sbjct: 163 GLMSIPENVDDHASQLAAFQPLAELQQRLVQRYPSVDTLSMGMSGDMDAAIESGSTMVRI 222

Query: 216 GISLYGGTDKINKS 229
           G +++G  D  NK+
Sbjct: 223 GTAIFGHRDYSNKA 236


>gi|260581995|ref|ZP_05849790.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           NT127]
 gi|260094885|gb|EEW78778.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           NT127]
          Length = 237

 Score = 38.5 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 76/238 (31%), Gaps = 43/238 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +      A           +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKT-------KPISAILSAYQAGQIAFG 54

Query: 62  VTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLM 116
              V+EGV+                +  +   + +++ +  + +  +         ++  
Sbjct: 55  ENYVQEGVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIAERLNEQR 114

Query: 117 ---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + +    ++ GL  +E L    +  N     L  ++   A        
Sbjct: 115 PTNKAPLNVLIQINISDEESKSGLQPEEMLTLAKHIENLPHLCLRGLM---AIPAPTDKI 171

Query: 174 VNSVQLERFRTLISHYKGIEASLAS------SSGILLGPNY----HFQLTRPGISLYG 221
             + Q   FR +   ++ ++ +L +      S G+             + R G +++G
Sbjct: 172 --AEQEAVFRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFG 227


>gi|78486175|ref|YP_392100.1| hypothetical protein Tcr_1834 [Thiomicrospira crunogena XCL-2]
 gi|78364461|gb|ABB42426.1| Conserved hypothetical protein; UPF0001 member [Thiomicrospira
           crunogena XCL-2]
          Length = 227

 Score = 38.5 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 19/155 (12%)

Query: 51  ALYNAGVQDFFVTSVEEG---VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
           AL + G + F    V+E    +  R   P      +  I   + K I +   +  + SV 
Sbjct: 45  ALADIGQRAFGENYVQEALDKIAQR---PDLEWHFIGPIQSNKTKPIAEN--VQWVHSVD 99

Query: 108 QLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
           +     +L          ++    + +    ++ G S  E LD T          L  ++
Sbjct: 100 RFKIARRLSEQRPDNLPPLNILLEVNISNEASKAGFSPNEILDVTKQILELPHLALRGLM 159

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           +  A A          Q + F  +    + ++   
Sbjct: 160 AIPAKAYSHD-----EQKQPFHQMKLLLESMQTHF 189


>gi|30248969|ref|NP_841039.1| hypothetical protein NE0966 [Nitrosomonas europaea ATCC 19718]
 gi|30138586|emb|CAD84877.1| Uncharacterized pyridoxal-5'-phosphate dependent enzyme family
           UPF0001 [Nitrosomonas europaea ATCC 19718]
          Length = 238

 Score = 38.5 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 69/191 (36%), Gaps = 27/191 (14%)

Query: 50  PALYNAGVQDFFVTSVEEGV-KLRLYTPQARI---FVLYGIHPGQEKIIFDTNLIPVISS 105
              + AG   F    ++EG+ K+R       I   F+   I   + K+I +      +  
Sbjct: 44  REAWEAGQTVFGENYLQEGLVKIRAL-SDLPIEWHFI-GPIQSNKTKLIAENFSW--VHG 99

Query: 106 VPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL 159
           + +    ++L +        +     + V     + G+  ++A +       +   QL  
Sbjct: 100 IDREKIATRLSAARPESLPPLQVCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRG 159

Query: 160 IISHLACADDPSSHVNSVQLERFRTLISHYKGIE--------ASLASSSGILLGPNYHFQ 211
           I+     A    + V ++Q E+F+ +   Y+ ++         S+  S  +         
Sbjct: 160 IM-----AVPELTAVTALQREQFQMMREVYEQLQQQGFNLDTLSMGMSEDLENAIAEGAT 214

Query: 212 LTRPGISLYGG 222
           + R G +++G 
Sbjct: 215 MVRIGTAIFGP 225


>gi|220906661|ref|YP_002481972.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
           7425]
 gi|219863272|gb|ACL43611.1| alanine racemase domain protein [Cyanothece sp. PCC 7425]
          Length = 228

 Score = 38.5 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 74/237 (31%), Gaps = 40/237 (16%)

Query: 12  DLTA--LKNNWHSMN---ALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           DL A  + +    +     L  + R  AV   V  +A            Y AGV+DF   
Sbjct: 2   DLQACSIVD--RIIRIRTTLPDSVRLIAVSKGVSGDA--------IRQAYAAGVRDFGEN 51

Query: 64  SVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
            V+E +    +L+         ++  +   + +I         I SV  L     L    
Sbjct: 52  RVQEAIAKQDELQDLN-DIHWHLIGHLQSNKARIALQHFDW--IHSVDSLKLAQHLNHLS 108

Query: 120 VSHP-----YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS----HLACADDP 170
                      +++    N+ G +  + L            Q++ ++      L+  +  
Sbjct: 109 QDLSPPQVLLQVKLRNDPNKYGWNPVDLLQDLPQLAQCSHLQVAGLMVILPLGLSETERL 168

Query: 171 SSHVNSVQLERF------RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
           S+   + QL+             +    E S+  S   L        + R G  L+G
Sbjct: 169 STFGQARQLQLQIQAQMREQQWQNMPMTELSMGMSDDYLQAVKAGSTMVRLGRILFG 225


>gi|15615113|ref|NP_243416.1| hypothetical protein BH2550 [Bacillus halodurans C-125]
 gi|10175170|dbj|BAB06269.1| BH2550 [Bacillus halodurans C-125]
          Length = 228

 Score = 38.5 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 14/150 (9%)

Query: 50  PALYNAGVQDFFVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEK-IIFDTNLIPVISSVP 107
                AG+       VE GV+ R   P +     +  +   + K +I D + +  +  + 
Sbjct: 43  REALEAGITHIGENRVEGGVEKRRAFPNEGTWHFIGSLQSKKVKKMIADFDYLHSLDRLS 102

Query: 108 QLTFYSKLMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA 165
                 + +  G +    +QV+     ++ GL  +E L F          ++  +++   
Sbjct: 103 LAKEIDRRLPDGQALNCFVQVNVSGEQSKSGLKPEEVLPFIEELQTYPSIRVVGLMTMAP 162

Query: 166 CADDPSSH----------VNSVQLERFRTL 185
             +DP              + VQ +RF   
Sbjct: 163 FVEDPEDTRWVFRELRHLRDEVQAKRFNHA 192


>gi|229847062|ref|ZP_04467168.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           7P49H1]
 gi|229810146|gb|EEP45866.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           7P49H1]
          Length = 233

 Score = 38.5 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 80/239 (33%), Gaps = 45/239 (18%)

Query: 15  ALKNNWHSMNALS-----------GNARTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +                  +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIEMACEEAKRNQNTVKLLAVSKT-------KPISAILSAYQAGQTAFG 54

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-----PGQEKIIFDT-NLIPVISSVPQLTFYSKL 115
              V+EGV+ ++   +++   L           + +++ +  + +  +         ++ 
Sbjct: 55  ENYVQEGVE-KIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQ 113

Query: 116 M---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ G+  +E L    +  N     L  ++   A       
Sbjct: 114 RPTNKAPLNVLIQINISDEESKSGIQPEEMLILAKHIENLPHLCLRGLM---AIPAPTDK 170

Query: 173 HVNSVQLERFRTLISHYKGIEASLAS------SSGILLGPN----YHFQLTRPGISLYG 221
              + Q   FR +   ++ ++ +L +      S G+         Y   + R G +++G
Sbjct: 171 I--AEQEAVFRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKYGSTMVRIGTAIFG 227


>gi|212709355|ref|ZP_03317483.1| hypothetical protein PROVALCAL_00391 [Providencia alcalifaciens DSM
           30120]
 gi|212688267|gb|EEB47795.1| hypothetical protein PROVALCAL_00391 [Providencia alcalifaciens DSM
           30120]
          Length = 230

 Score = 38.5 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE---KIIFDTNLIPVISSVPQ 108
              AG + F    V+EGV+   Y  +    V + I P Q    +++ +        ++ +
Sbjct: 45  AIEAGQRQFGENYVQEGVEKIQYFSERNDLVWHFIGPLQSNKSRLVAEHFDW--FHTLDR 102

Query: 109 LTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                +L          L V    N      + G++L+E  +            L  +++
Sbjct: 103 AKIAQRLNEQRPQDKAPLNVLIQINISDENSKSGITLEEVNELAAQVAQLPNLVLRGLMT 162

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS----SSGILLGP----NYHFQLTR 214
                  P +     Q   FR +   ++ ++AS ++    S G+        +    L R
Sbjct: 163 ----IPAPETDY-ERQCAAFRQMEFAFEQLKASYSTVDTLSMGMTDDMRAAIHCGSTLVR 217

Query: 215 PGISLYG 221
            G +++G
Sbjct: 218 IGTAIFG 224


>gi|332996676|gb|EGK16301.1| alanine racemase, N-terminal domain protein [Shigella flexneri
           K-272]
 gi|333013083|gb|EGK32459.1| alanine racemase, N-terminal domain protein [Shigella flexneri
           K-227]
          Length = 387

 Score = 38.5 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 63/237 (26%), Gaps = 33/237 (13%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVI 103
           A  L   G         +E   +R       +      V    H   + +   T++I V 
Sbjct: 70  AEKLLALGYSGIVAVDYKEARVMRRAGL--PVAHQGHLVQIPCHQVADAVEQGTDIITVF 127

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQV--DTGF----NRLGLSLQEALDFTHNSFNKKLGQL 157
           +        +  +  G   P  L+V  D  F       G       +            L
Sbjct: 128 TLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLYPGQESGFVQHSLHEVIAEIKKLPGLHL 187

Query: 158 SLIISHLACADDPSSHVN-------------SVQLERFRTLISHYKGIEASLASSSGILL 204
           + + +H  C     +                  QL +    I       A+  +S  +L 
Sbjct: 188 AGL-THFPCLLWDEAAEKVLPTPNLHTLVQARDQLAKSGIAIEQLNVPSATSCTSLPLLA 246

Query: 205 GPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
              Y      PG +L G      +   P +  +   + I        G+   YGG  
Sbjct: 247 --EYGATHAEPGHALTGTIPANQQGDQPERIAMLWLSEISH---HFRGDSYCYGGGY 298


>gi|257484843|ref|ZP_05638884.1| alanine racemase domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 221

 Score = 38.5 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 52/156 (33%), Gaps = 33/156 (21%)

Query: 49  APALYNAGVQD--FFVTS----VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102
           A   +  G+ D  + V      +++ +KLR    +  I                      
Sbjct: 72  AEHCFAEGINDVFYAVAIAPGKLDQALKLRRNGCRLSIL------------------TDS 113

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLII 161
           +++   +  + +           +++D   +R GL++ + +L     +  +    L  ++
Sbjct: 114 VAAAQSIVAFGQRHDENFD--VWIEIDCDGHRSGLTVDDPSLVEVARTLIEGGMHLRGVM 171

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           +H   + D  +       E  + L    + +  S A
Sbjct: 172 THAGSSYDLDTP------EALQALAEQERRLCVSAA 201


>gi|196230663|ref|ZP_03129525.1| hypothetical protein CfE428DRAFT_2690 [Chthoniobacter flavus
           Ellin428]
 gi|196225593|gb|EDY20101.1| hypothetical protein CfE428DRAFT_2690 [Chthoniobacter flavus
           Ellin428]
          Length = 932

 Score = 38.5 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 7/107 (6%)

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRL--GLSLQEALDFTHNSFNKKLGQLSLII 161
                     +L          LQ      +   G   +        +   +  + + I 
Sbjct: 131 HDQQSAEIAQQLAQLAERQAVNLQNGITLGQWSEGKKPENFEAAAQANLQGQQAEQAAIA 190

Query: 162 SHL-----ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL 203
           + L       A       N+ Q  RFR  +   + ++ S+ +++G L
Sbjct: 191 NELKALAQRVASFAREPENAEQAARFRKGLEDIQKVQPSVENAAGAL 237


>gi|163760387|ref|ZP_02167469.1| alanine racemase-like protein [Hoeflea phototrophica DFL-43]
 gi|162282338|gb|EDQ32627.1| alanine racemase-like protein [Hoeflea phototrophica DFL-43]
          Length = 387

 Score = 38.5 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 39/207 (18%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV---VKDNAYGLG----CEKIAPALYN--AGVQD 59
           L +DL AL+ N   +  +   A++  V   V       G       +A  L     G   
Sbjct: 32  LVLDLDALERNI--IK-MGEQAKSMGVRHRV------HGKMHKSVDVAK-LQERLGGA-- 79

Query: 60  FFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVPQLTF 111
             V    V E         +  + +   +  P +   +          I  +     +  
Sbjct: 80  VGVCCQKVSEAEAFARGGIK-DVLISNQVRDPLKIDRLARMPKLGARTICCVDDAANIAD 138

Query: 112 YSKLM-SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLI------ISH 163
            S+     G      +++D G  R G+S  ++ +         K  + + +      + H
Sbjct: 139 LSQAAVRHGTMVECLVEIDCGAGRCGVSTTKDVVALAQGIAAAKGLKFAGLQAYQGAMQH 198

Query: 164 LACADDPSSHVNSVQLERFRTLISHYK 190
           L  A         + +   R  +   K
Sbjct: 199 LP-AYADRKAKIDIAVAMVREAVDALK 224


>gi|118590930|ref|ZP_01548330.1| ornithine decarboxylase [Stappia aggregata IAM 12614]
 gi|118436452|gb|EAV43093.1| ornithine decarboxylase [Stappia aggregata IAM 12614]
          Length = 406

 Score = 38.5 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 79/251 (31%), Gaps = 52/251 (20%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEK-IAPALYNAGVQDFFVTSVEEGVKLRLY 74
           LK++     +L       AV K N      E  +  AL  AG+  F V S  E   ++  
Sbjct: 28  LKHDAQQFQSLFPGKTAYAV-KTNG-----EPFVLEALAKAGISCFDVASPAEFASVKKA 81

Query: 75  TPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGF- 132
            P+A +  ++ I      ++  +T  I  +S   +      L         AL +D G  
Sbjct: 82  APKAEMLYMHPIKAQSDIRLALETYGIRTLSLDHEDEVAKIL-----RIVRALDIDPGTI 136

Query: 133 -----------------NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
                             + G +   A++        ++G    +  H+    +      
Sbjct: 137 TLFVRIATKGHAAYELSKKFGAAPGHAVELLQRI--NRIGFKCGLCFHVGSQIEEPETY- 193

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235
                     ++    I     S +G+   P     +     ++YG   +  +  P    
Sbjct: 194 -------ERALASADWIR----SRAGV---PIVELDVGGGFPAVYGHDPR--RKVPEMP- 236

Query: 236 VTAEARIILIR 246
            T EA +  ++
Sbjct: 237 -TLEALMGQLK 246


>gi|110634377|ref|YP_674585.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium sp. BNC1]
 gi|110285361|gb|ABG63420.1| Orn/DAP/Arg decarboxylase 2 [Chelativorans sp. BNC1]
          Length = 406

 Score = 38.5 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 49/172 (28%), Gaps = 47/172 (27%)

Query: 35  VVKDNA------------YGLGCEK------IAPALYNAGVQDFFVTSVEEGVKLRLYTP 76
           V+K +A            Y     K      +   L  AGV  F V S  E   +R   P
Sbjct: 27  VLKADARGFMGLFPGKTAY---AVKTNGEPLVLKTLAEAGVTAFDVASPAEFAAVRAVAP 83

Query: 77  QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYALQVDTGF--- 132
            A +  ++ +     K   D  L      + ++   +   ++       AL +D G    
Sbjct: 84  SAEMLYMHPV-----KAQADIRLALEGYGIRKIAVDHEDEVTKLTRVVRALDIDPGRLTV 138

Query: 133 ---------------NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
                           + G    +A+         + G    I  H+    +
Sbjct: 139 FVRIQTKGQATYELSKKFGAGPAQAVQLLQRL--HRNGYKVGICFHVGSQIE 188


>gi|331091121|ref|ZP_08339963.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405343|gb|EGG84879.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 224

 Score = 38.5 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 36/178 (20%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68
           +L  +  N H   +        AV K            ++   LY+AG ++F    V+E 
Sbjct: 5   NLNHVIENIH--KSCKNEVTLIAVSKTKPA--------EMIQELYDAGCRNFGENKVQE- 53

Query: 69  VKLRLYTPQA-RIF-------VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
                       I        ++  +   + K I D   + +I SV  L     +     
Sbjct: 54  ------LIDKYEILPKDICWHMIGHLQRNKVKYIVDK--VSLIHSVDSLRLAQTIEKEAE 105

Query: 121 SHP--YALQVDTGFNR----LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  + ++    R     G+  +E         +    ++  +++      +P  
Sbjct: 106 KKNCVVDILIEINMAREESKYGIYPEELEALLREISHLSHIRVKGLMTVAPNVKNPEE 163


>gi|257455743|ref|ZP_05620971.1| pyridoxal phosphate enzyme, YggS family [Enhydrobacter aerosaccus
           SK60]
 gi|257446871|gb|EEV21886.1| pyridoxal phosphate enzyme, YggS family [Enhydrobacter aerosaccus
           SK60]
          Length = 241

 Score = 38.5 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 31/232 (13%)

Query: 14  TALKNNWHSMN----ALSGNARTAAVVKD--NAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            AL   W  +      L+   +  AV K   N        +   L   G QDF    V+E
Sbjct: 20  QALIARWQQVKTDVARLNPTVKLLAVSKTKPN-------WMIRTLAQQGQQDFGENYVQE 72

Query: 68  GV----KLRLYTPQARIFVLYGI----HPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-- 117
            V     L+  T   +  V + I        +++    + +  +  +      ++  +  
Sbjct: 73  AVAKIAALKDVTANEQPLVWHYIGHIQRNKTKELAAHFDWVHGVDRLIIAQRLNEQRAEH 132

Query: 118 -CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              ++    + +D   ++ G    +  +           QL  ++  +  A + SS    
Sbjct: 133 LAPLNICIEVNIDDEASKSGCQPNQLPELVTEISQLPNLQLRGLM--IIPAKNSSSAFVK 190

Query: 177 VQLERFRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
            Q + F     ++   E     S+  S  I         + R G +++G  D
Sbjct: 191 TQ-QLFEQNKRYHAHPEQWDTLSMGMSGDIEQAIAAGATIVRIGTAIFGARD 241


>gi|167518219|ref|XP_001743450.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778549|gb|EDQ92164.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1602

 Score = 38.5 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 59/216 (27%), Gaps = 48/216 (22%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGL----GCEKIAPALYNAG 56
             +DL  ++ N H M A +         + +T               G    +  L    
Sbjct: 16  ASVDLHKVQANVHRMQARANQLGVRLRPHYKT----------HKTRQGA---SLQLAAQD 62

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL------IPVISSVPQLT 110
                V+++EE   ++     + +         + K I           I V  S     
Sbjct: 63  QPGITVSTLEEARHVQA--VVSDVLFAGYPTEAKVKEILALTESLAAFGILVACSAHLNV 120

Query: 111 FYSKLMSC----GVSHPYALQVDTGFNRLGLSLQ-----EALDFTHNSFNKKLGQLSLII 161
            +  L       G      L VD+G++R GL         AL+               + 
Sbjct: 121 LFRGLRLASPPPGRPLGVWLDVDSGYHRSGLGTDADAAVTALELVRCINQHPGLTFCGLY 180

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           +H            +  +   + +    +    +LA
Sbjct: 181 TH------AGHSYAARGVSEIQAIARQERDALCTLA 210


>gi|284036152|ref|YP_003386082.1| alanine racemase domain protein [Spirosoma linguale DSM 74]
 gi|283815445|gb|ADB37283.1| alanine racemase domain protein [Spirosoma linguale DSM 74]
          Length = 371

 Score = 38.5 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 14/145 (9%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI------ 100
           + +  L +AG++     ++ E   L   +  A   VL    P + K+    +LI      
Sbjct: 55  EASQLLMDAGIRKLKCATIAEAEML--ASIGAPD-VLLAYQPNEAKMHRLLSLIKAYPET 111

Query: 101 ---PVISSVPQLTFYSKLMSCGVSHPYA-LQVDTGFNRLGLSLQEA-LDFTHNSFNKKLG 155
               ++ +V      S+L           + ++ G NR G+   EA L       +    
Sbjct: 112 IFSCLVDNVTTAHQLSELAVGAGVVVPVYIDLNVGMNRTGMVPGEAVLTLYTELSSLPGI 171

Query: 156 QLSLIISHLACADDPSSHVNSVQLE 180
           +   + ++     DP   V + Q +
Sbjct: 172 RPMGLHAYDGHLRDPDLAVRTAQCD 196


>gi|116754057|ref|YP_843175.1| diaminopimelate decarboxylase [Methanosaeta thermophila PT]
 gi|116665508|gb|ABK14535.1| diaminopimelate decarboxylase [Methanosaeta thermophila PT]
          Length = 440

 Score = 38.5 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 27/198 (13%)

Query: 14  TALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN--AGVQDFFVTSVEEGVKL 71
             L+ N    +    +A     VK N    G   I   L    AG   F   S  E    
Sbjct: 52  DRLRENIRRYHRAFPDADKYFAVKAN----GNISIIRILAQEGAGADVF---SAGELYLA 104

Query: 72  RLYTPQARIFVLYGIH--PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC----------- 118
           RL        +  G      + ++   + +   I S  +L   S++ S            
Sbjct: 105 RLAGVPRERILFNGNSKRDEELRMAVTSGVRVSIDSEEELESLSRIASEESKNVEILFRV 164

Query: 119 --GVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
              +S     ++ TG      G+  Q        + +    +   +  H+          
Sbjct: 165 NPDISVNTHPKIATGLKSSKFGIPAQSVRSICEKAMHMDGIKPIGLHCHIGS-QILDVSS 223

Query: 175 NSVQLERFRTLISHYKGI 192
            S    R   L+     I
Sbjct: 224 FSEAAARMMDLVGEIVDI 241


>gi|319406300|emb|CBI79937.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 226

 Score = 38.5 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 12/120 (10%)

Query: 52  LYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
           L  AG   F    V+E  +    LR       + ++  +   +        +  VI +V 
Sbjct: 50  LLQAGQFLFAENRVQEAAEKWPSLRQKFNTIELHLIGPLQSNKTAEAVK--IFDVIQTVD 107

Query: 108 QLTFYSKLMSCGVSHPYAL----QVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLII 161
           +     KL          L    QV+ G      G+  QE   F     N     +  ++
Sbjct: 108 REKIAKKLAEEMHKQKKHLPCYIQVNIGLESQKSGIFPQEVKAFVAQCKNNYGLDIIGLM 167


>gi|254440988|ref|ZP_05054481.1| Alanine racemase, N-terminal domain family [Octadecabacter
           antarcticus 307]
 gi|198251066|gb|EDY75381.1| Alanine racemase, N-terminal domain family [Octadecabacter
           antarcticus 307]
          Length = 394

 Score = 38.5 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 61/213 (28%), Gaps = 47/213 (22%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPALYN--A 55
           L +DL AL+ N   M   +         K      G              +A  L     
Sbjct: 38  LVLDLDALERNIKKMGDYA---------KA----HGMRHRVHGKMHKSVDVA-MLQEKLG 83

Query: 56  GVQDFFVTS--VEEGVKLRLYTPQARIFVLY-GIHPGQEKIIFD-----TNLIPVISSVP 107
           G     V    V E         +  + V      P +   +         ++  +    
Sbjct: 84  GA--VGVCCQKVSEAEVFARGGIK-DVMVSNQVTAPAKIDRLARMPKLGARVLCCVDDPE 140

Query: 108 QLTFYSKLM-SCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI----- 160
            +   S      G      +++D G  R G+ S Q+ ++        +  + + I     
Sbjct: 141 NVANLSAAAVKHGTQIECIVEIDCGAGRCGVSSTQDVVNIAKMIDAAEGLKFAGIQAYQG 200

Query: 161 -ISHLACADDPSSHVNSVQLERFRTLISHYKGI 192
            + H+    D  +   +V + +    I+  K +
Sbjct: 201 AMQHMDSYSDREAK-TAVAIGQVENAITGLKSV 232


>gi|319761308|ref|YP_004125245.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
 gi|330823182|ref|YP_004386485.1| alanine racemase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|317115869|gb|ADU98357.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
 gi|329308554|gb|AEB82969.1| alanine racemase domain protein [Alicycliphilus denitrificans K601]
          Length = 387

 Score = 38.5 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 41/151 (27%), Gaps = 30/151 (19%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
             IDL A++ N   M A +         +A+                IA  L  AG    
Sbjct: 22  AVIDLDAMERNIQRMAAFARQNQVRWRPHAKM----------HKSAAIALLLEQAGACGH 71

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT---------NLIPVISSVPQLTF 111
            V    E   L     +        I P +   +             L   + S   +  
Sbjct: 72  CVQKTSEAEALAAGGVRDLFISNEVIAPAKLLRVARLAARLAADGGRLAIAVDSPEGIAR 131

Query: 112 YSKLMSCGVS---HPYALQVDTGFNRLGLSL 139
            +  M    S       +++D G  R G+  
Sbjct: 132 LAGAMDAAGSDAGIDVLVEIDVGQGRCGVPP 162


>gi|209546068|ref|YP_002277958.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538925|gb|ACI58858.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 366

 Score = 38.5 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 68/265 (25%), Gaps = 50/265 (18%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE- 66
           R  ID   L  N   + +                  G     P +    +    V  +  
Sbjct: 23  RPVIDEDRLAANIARVQSYMDE-------------HGL-NFRPHIKTHKIPALAVAQIAA 68

Query: 67  -----------EGVKLRLYTPQARIFV-LYGIHPGQEKIIFDTN-----LIPVISSVPQL 109
                      E            I +    I   + + +   N     L  V  S   +
Sbjct: 69  GAKGINCQKVSEAEVFAEAGF-GDILITFNIIGQQKLERLARLNEKIPALKVVADSETTI 127

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
              +   S        ++ DTG  R G+   +EA                 I+++     
Sbjct: 128 DGLAAHFSGHKPLTVLVECDTGGGRCGVQRPEEAASLARRIAAADGLTFGGIVTYP---- 183

Query: 169 DPSSHVNSVQLERF-RTLISHYK--GIEASLASSSGILLGPNYHF----QLTRPGISLYG 221
                 ++  +E F    +   K  GI+  + S+ G       H        R G  +Y 
Sbjct: 184 ---KPQSAASVEAFITETLDCLKSDGIDCPIVSNGGTPSLFEAHLVPSATEHRAGTYIYN 240

Query: 222 GTDKINKSHPMQ--TVVTAEARIIL 244
               +   H  +    +   A ++ 
Sbjct: 241 DRQMVRMGHCTEDDCAMHVLATVVS 265


>gi|167036133|ref|YP_001671364.1| alanine racemase domain-containing protein [Pseudomonas putida
           GB-1]
 gi|166862621|gb|ABZ01029.1| alanine racemase domain protein [Pseudomonas putida GB-1]
          Length = 228

 Score = 38.5 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 30/196 (15%)

Query: 50  PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPVISSV 106
             ++ AGV+DF    ++E +  +         +      I   + K I +      + SV
Sbjct: 44  REIHTAGVRDFGENYLQEALTKQQELSDLP-LIWHFIGPIQSNKTKAIAEHFDW--VHSV 100

Query: 107 PQLTFYSKLMS------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
            +L    +L          ++    + V    ++ G +  +              +L  +
Sbjct: 101 DRLKIAQRLSEQRPAGLAPLNLCLQVNVSGEDSKSGCAPADLPALAKAVAGLPNLRLRGL 160

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQ 211
           +   A  +       + Q   F  L    + +   L      L     H           
Sbjct: 161 M---AIPEPTDDR--AAQEAAFAHLRQLQENLGLDLD----TLSMGMSHDLEAAIAQGAT 211

Query: 212 LTRPGISLYGGTDKIN 227
             R G +L+G  D  N
Sbjct: 212 WVRIGTALFGARDYGN 227


>gi|153003227|ref|YP_001377552.1| diaminopimelate decarboxylase [Anaeromyxobacter sp. Fw109-5]
 gi|152026800|gb|ABS24568.1| diaminopimelate decarboxylase [Anaeromyxobacter sp. Fw109-5]
          Length = 422

 Score = 38.5 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 27/202 (13%)

Query: 17  KNNWHSM-NALSGNARTAA-VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74
           ++ W  +  +L+G        VK NA       +A      G   F + S  E  ++   
Sbjct: 39  RH-WKVLHRSLAGIRHVVCYAVKANA---NLALLARFA-KLG-SGFDIVSAGELYRVLKA 92

Query: 75  TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK----LMSCGVSHPYALQVD- 129
               R  V  G+    ++I F       + +V      ++        GV  P AL+V+ 
Sbjct: 93  GGDPRKVVFSGVGKRDDEIAFALESGVRVLNVESAGELARISIVARRMGVRAPIALRVNP 152

Query: 130 -----------TGF--NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                      TG   N+ G+S+ EA      +   +   +  I SH+            
Sbjct: 153 DVDPKTHPYISTGLRENKFGVSVDEARRLYPLAAKDEALHVMGIASHIGSQITTVKPFLD 212

Query: 177 VQLERFRTLISHYKGIEASLAS 198
             ++R  +L    +     LA 
Sbjct: 213 A-IDRVLSLARELEKQGIPLAH 233


>gi|118387713|ref|XP_001026959.1| Alanine racemase, N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89308729|gb|EAS06717.1| Alanine racemase, N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 381

 Score = 38.5 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 14/131 (10%)

Query: 40  AYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD--- 96
           AY      +   +   GV    V+SV           +  I +    +  + K +     
Sbjct: 49  AY------VGTIVRECGVNQIAVSSVSMAFYFAKNGWK-DITLAIPFNIRELKPLLQLAQ 101

Query: 97  -TNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALD---FTHNSFNK 152
             +++ ++    Q   Y              ++DTG+ R G+  QE              
Sbjct: 102 KIDVLNIMIDHEQTAQYVAEHVQDAKLGIFFKIDTGYKRCGVQPQEYEAVDKLLSIIGQN 161

Query: 153 KLGQLSLIISH 163
                   ++H
Sbjct: 162 NNLTFKGFLTH 172


>gi|170744100|ref|YP_001772755.1| alanine racemase domain-containing protein [Methylobacterium sp.
           4-46]
 gi|168198374|gb|ACA20321.1| alanine racemase domain protein [Methylobacterium sp. 4-46]
          Length = 359

 Score = 38.5 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 34/209 (16%)

Query: 11  IDLTALKNNWHSMNALSGNARTA----------AVVKDNAYGLGCEKIAPALYNAGVQDF 60
           IDL  ++ N   + A    A  A           V+            A     AG +  
Sbjct: 19  IDLDRVERNIARLQAACDAAGLANRPHIKTHKSPVL------------ARMQREAGARGL 66

Query: 61  FVTSVEEGVKLRLYTPQARIFV---LYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLM 116
              ++ E   +        I +   L G    G+   +     + V +  P +       
Sbjct: 67  TCQTLGEAEVMAEAGLD-DILISYNLVGPEKLGRLARLLRRTALTVSADHPAVVAGLGEA 125

Query: 117 SCGVSHPYALQV--DTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           +     P A+ V  DTG  R G+   +EA+            + + +   L    +    
Sbjct: 126 AAAAGRPLAVMVECDTGRARAGVARPEEAVALARQIAGTPSLRFAGL---LLYPPEDGVA 182

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGI 202
                L+R R  ++  +G+EA + S+ G 
Sbjct: 183 ATQAFLDRVRQGLAG-EGLEAGIVSTGGT 210


>gi|320155279|ref|YP_004187658.1| hypothetical protein VVM_00844 [Vibrio vulnificus MO6-24/O]
 gi|319930591|gb|ADV85455.1| hypothetical protein YggS proline synthase co-transcribed bacterial
           PROSC-like protein [Vibrio vulnificus MO6-24/O]
          Length = 208

 Score = 38.5 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 76/194 (39%), Gaps = 19/194 (9%)

Query: 52  LYNAGVQDFFVTSVEEGVK-LR---LYTPQARI---FVLYGIHPGQEKIIFDTNLIPVIS 104
            Y+AG + F    V+EGV+ +R      P+  I   F+   I   + +++ +      + 
Sbjct: 18  AYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEWHFI-GPIQSNKSRLVAEHFAW--VH 74

Query: 105 SVPQLTFYSKLMSCGV----SHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLS 158
           ++ +     +L              +QV+T    ++ G+S +E               L 
Sbjct: 75  TIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLR 134

Query: 159 LIISHLACADDPSSHVNSVQ--LERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRP 215
            ++S     DD +S + + Q   E  + L+  Y  ++  S+  S  +         + R 
Sbjct: 135 GLMSIPENVDDHASQLAAFQPLAELQQRLVQRYPSVDTLSMGMSGDMDAAIESGSTMVRI 194

Query: 216 GISLYGGTDKINKS 229
           G +++G  D  NK+
Sbjct: 195 GTAIFGHRDYSNKA 208


>gi|145633703|ref|ZP_01789429.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           3655]
 gi|145635487|ref|ZP_01791187.1| hypothetical protein CGSHiAA_03736 [Haemophilus influenzae PittAA]
 gi|144985463|gb|EDJ92284.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           3655]
 gi|145267252|gb|EDK07256.1| hypothetical protein CGSHiAA_03736 [Haemophilus influenzae PittAA]
          Length = 237

 Score = 38.5 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 80/239 (33%), Gaps = 45/239 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +      A           +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKT-------KPISAILSAYQAGQTAFG 54

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-----PGQEKIIFDT-NLIPVISSVPQLTFYSKL 115
              V+EGV+ ++   +++   L           + +++ +  + +  +         ++ 
Sbjct: 55  ENYVQEGVE-KIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQ 113

Query: 116 M---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ G+  +E L    +  N     L  ++   A       
Sbjct: 114 RPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLM---AIPAPTDK 170

Query: 173 HVNSVQLERFRTLISHYKGIEASLAS------SSGILLGPNY----HFQLTRPGISLYG 221
              + Q   FR +   ++ ++ +L +      S G+             + R G +++G
Sbjct: 171 I--AEQEAVFRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFG 227


>gi|150376682|ref|YP_001313278.1| alanine racemase domain-containing protein [Sinorhizobium medicae
           WSM419]
 gi|150031229|gb|ABR63345.1| alanine racemase domain protein [Sinorhizobium medicae WSM419]
          Length = 352

 Score = 38.5 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 37/215 (17%)

Query: 115 LMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
               G      ++ +TG  R G+ +  EA             +   +++       P+  
Sbjct: 121 FADAGKPMTVLVECNTGAERCGVATPAEAARLAMRIAAAPGLRFGGLMT-----YPPADG 175

Query: 174 VNSVQLERFR---TLISHYKGIEASLASSSGI------LLGPNYHFQLTRPGISLYGGTD 224
              VQ   F      +   +GIE    +S G          P       RPG  +Y    
Sbjct: 176 AARVQ--TFMSEAKQLIEARGIEVPCVTSGGTPGMMQAAEAPVASE--HRPGTYIYNDRS 231

Query: 225 KINK--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI----GYADG 278
            + +  +      +T  A ++ +             +  +   S +  + +    GY   
Sbjct: 232 LVARGVASWDDCALTVLATVVSV---------PSENRAIIDAGSKVLTSDLLGLTGYGHV 282

Query: 279 YPL---TLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
                  +  L  EH   V  G      G  + I+
Sbjct: 283 LDRDDIRIDQLSEEHGRLVSDGSIRLTVGQQLRIV 317


>gi|49476195|ref|YP_034236.1| hypothetical protein BH15400 [Bartonella henselae str. Houston-1]
 gi|49239003|emb|CAF28303.1| hypothetical protein BH15400 [Bartonella henselae str. Houston-1]
          Length = 229

 Score = 38.5 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 63/183 (34%), Gaps = 17/183 (9%)

Query: 52  LYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
           L  AG   F    V+E  +    LR       + ++  +   +        +  VI +V 
Sbjct: 53  LLQAGQSVFAENRVQEATEKWSVLRQQFKNIELHLIGPLQSNKTAQAVK--IFDVIQTVD 110

Query: 108 QLTFYSKL----MSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLII 161
           +      L         + P  +QV+ G      G++ QE + F     N     +  ++
Sbjct: 111 REKIAKNLSIEMQKQKKTLPCYIQVNLGLEPQKSGIAPQEVVPFVARCKNHYGLDIIGLM 170

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
           +     ++P     ++  +  +   +  + +   +++     L   +   + R G +L+G
Sbjct: 171 AIPPVEENP-GPYFALLAKLAKQ--ADLQKLSMGMSNDFKTAL--QFGSNVLRIGSALFG 225

Query: 222 GTD 224
              
Sbjct: 226 KRP 228


>gi|260893910|ref|YP_003240007.1| UDP-N-acetylglucosamine pyrophosphorylase [Ammonifex degensii KC4]
 gi|260866051|gb|ACX53157.1| UDP-N-acetylglucosamine pyrophosphorylase [Ammonifex degensii KC4]
          Length = 462

 Score = 38.5 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 33/139 (23%)

Query: 25  ALSGNARTAAVVKDNAYGLGCEKIAPAL----------YNAGVQDFFVTSVEEGVKLRLY 74
             +G +R  AVV     G G E++A A+             G     +    E +     
Sbjct: 49  EQAGASRIIAVV-----GHGGEEVATAVGNRAEIVWQREQLG-TGHALLQAREAL----A 98

Query: 75  TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNR 134
             +  I VL    PG   ++        + S  Q   + +  +        L+  TG+ R
Sbjct: 99  GHEGDILVL----PGDVPLVRG----ETLRSFWQ--AHRQKGAAATVLTTELEDPTGYGR 148

Query: 135 LGLSLQEALDFTHNSFNKK 153
           +   +++A          K
Sbjct: 149 I---VRDAEGRLRRIVEHK 164


>gi|121610311|ref|YP_998118.1| alanine racemase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121554951|gb|ABM59100.1| D-3-hydroxyaspartate aldolase [Verminephrobacter eiseniae EF01-2]
          Length = 372

 Score = 38.5 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 56/170 (32%), Gaps = 43/170 (25%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNART------------AAVVKDNAYGLGCEKI 48
           L +DL A + N   M A +         +A+T               V     G  C+K+
Sbjct: 20  LIVDLDAFERNMKKMAAFADLAGIRLRPHAKTHRCAAIALKQIQMGAV-----GQCCQKV 74

Query: 49  --APALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106
             A AL   GV+D FV++  E + +R                    +   T +     ++
Sbjct: 75  GEAEALVQGGVRDIFVSN--EVLDIRKL-------------RRLAALAKSTTISLCFDAL 119

Query: 107 PQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155
            Q+   SK      V     +++D G  R G+   +A            G
Sbjct: 120 EQVDAASKAAQEFDVELGALVEIDLGMRRCGVVPGDAAAALAKYIEAAPG 169


>gi|82703845|ref|YP_413411.1| hypothetical protein Nmul_A2732 [Nitrosospira multiformis ATCC
           25196]
 gi|82411910|gb|ABB76019.1| Protein of unknown function UPF0001 [Nitrosospira multiformis ATCC
           25196]
          Length = 244

 Score = 38.5 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 49  APALYNAGVQD---FFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP 101
           A  L  A V     F    ++E +     L+    +        I   + + I +     
Sbjct: 44  AERLREAFVAGQTVFGENYLQEALVKIDALKDLPIEWHFI--GPIQSNKTRRIAENFAW- 100

Query: 102 VISSVPQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLG 155
            + SV +     +L          LQ+    N      + G++ +E  D   +       
Sbjct: 101 -VHSVDRKKIAERLSKDRPEALPPLQICLQVNVSGEDSKSGVAPEEVADLAAHVAELPRL 159

Query: 156 QLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--------ASLASSSGILLGPN 207
           +L  ++     A    +   ++Q  +FR L   Y  ++         S+  S  + L   
Sbjct: 160 RLRGVM-----AIPELTKFTALQRSQFRMLKEAYDQLKQSGYDVDTISMGMSEDLELAIQ 214

Query: 208 YHFQLTRPGISLYGG 222
               + R G +++G 
Sbjct: 215 EGATMVRIGTAIFGP 229


>gi|56962451|ref|YP_174177.1| hypothetical protein ABC0677 [Bacillus clausii KSM-K16]
 gi|56908689|dbj|BAD63216.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 386

 Score = 38.5 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 79/270 (29%), Gaps = 51/270 (18%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYG---------LG-CEKIAPALYNAGVQDF 60
           IDL AL+ N   +   +             YG         +G    +   +  +G+   
Sbjct: 33  IDLDALERNAAILAKTAEE-----------YGMTLYYMTKQIGRSGFVGKHIEKSGIHK- 80

Query: 61  FVTS-VEEGVKLRLYTPQARIFVLYG-IHPG--QEKIIFDTNLIPVISSVPQLTFYSKLM 116
            V   ++E ++L+       I  L   + PG  Q   +  T++ P + ++  L    +L 
Sbjct: 81  AVAVDIDEAIQLKDGG--CAIGNLGHLVQPGKNQWPFVL-TDMKPEVVTLFSLERAKQLN 137

Query: 117 SCGVSH--------PYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIIS---- 162
              V              + D  F     G  L+E              +L  + S    
Sbjct: 138 EAAVQAGVVQDVIVRVISKGDCVFPGQYGGFLLEELPAAIKELTALTGIRLIGVTSFPVL 197

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSS------GILLGPNYHFQLTRPG 216
                D+   + ++ Q       +    G+E    ++        I +          PG
Sbjct: 198 AYTAGDNSYHYASNAQTIVKAVGLLQQAGVEVKHVNTPSATSVNTIPMLKQLGATHAEPG 257

Query: 217 ISLYGGTD--KINKSHPMQTVVTAEARIIL 244
            +L G T      +       +   + I  
Sbjct: 258 HALTGTTPLHAYREDLAELPAMVYVSEISH 287


>gi|289646519|ref|ZP_06477862.1| alanine racemase domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 378

 Score = 38.5 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 14/159 (8%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----LI 100
             +  A   AG     V++++E            +F    I PG+             L 
Sbjct: 48  LPVIQAQIAAGASGVTVSTLKEAEHCFAEGIN-DVFYAVAIAPGKLDQALKLRRNGCRLS 106

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLS 158
            +  SV                    +++D   +R GL++ + AL     +  +    L 
Sbjct: 107 ILTDSVVAAQAIVAFGQQHDEHFDVWIEIDCDGHRSGLTVDDPALVDVARTLVEGGMHLR 166

Query: 159 LIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
            +++H   + D  +       E  + L    + +  S A
Sbjct: 167 GVMTHAGSSYDLDTP------EALQALAEQERRLCVSAA 199


>gi|330869029|gb|EGH03738.1| alanine racemase domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 378

 Score = 38.1 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 14/159 (8%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----LI 100
             +  A   AG     V++++E            +F    I PG+             L 
Sbjct: 48  LPVIQAQIAAGASGVTVSTLKEAEHCFAEGIN-DVFYAVAIAPGKLDQALKLRRNGCRLS 106

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLS 158
            +  SV                    +++D   +R GL++ + AL     +  +    L 
Sbjct: 107 ILTDSVVAAQAIVAFGQQHDEHFDVWIEIDCDGHRSGLTVDDPALVDVARTLVEGGMHLR 166

Query: 159 LIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
            +++H   + D  +       E  + L    + +  S A
Sbjct: 167 GVMTHAGSSYDLDTP------EALQALAEQERRLCVSAA 199


>gi|319782827|ref|YP_004142303.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168715|gb|ADV12253.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 406

 Score = 38.1 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 36  VKDNAYGLGCEKIA-PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKI 93
           VK N      E+I    L  AGV+ F V S  E   +R  +P A +  ++ +      K+
Sbjct: 47  VKTNG-----EQIVLKTLVEAGVKAFDVASPGEFAAVRAVSPDAEMLYMHPVKAQSDIKL 101

Query: 94  IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131
             +   I VI S+      +KL         AL +D G
Sbjct: 102 ALEKYAIRVI-SLDHEDEITKL----TRVVRALDIDPG 134


>gi|117919643|ref|YP_868835.1| hypothetical protein Shewana3_1194 [Shewanella sp. ANA-3]
 gi|117611975|gb|ABK47429.1| Protein of unknown function UPF0001 [Shewanella sp. ANA-3]
          Length = 238

 Score = 38.1 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 67/187 (35%), Gaps = 15/187 (8%)

Query: 51  ALYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISS 105
           A YNAG + F    V+EGV     L+   P      +  +   +  ++    + +  +S 
Sbjct: 45  AAYNAGQRCFGENYVQEGVTKIEALKATHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSR 104

Query: 106 VPQLTFYSKLMSCG---VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                  ++        +     + +   + + G+  ++ L    +       QL  +++
Sbjct: 105 EKIAQRLNEQRPAHLAPLKVCIQINISDEYTKSGIDAEQMLPLADSISQLPHLQLRGLMA 164

Query: 163 HLAC----ADDPSSHVNSVQLERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGI 217
             +     A          QL  F TL  HY  ++  S+  S+ + +       + R G 
Sbjct: 165 IPSATNDIAQQTDELSKLKQL--FDTLKQHYPAVDTLSMGMSNDLDVAVECGSTMVRIGS 222

Query: 218 SLYGGTD 224
           +++G  D
Sbjct: 223 AIFGERD 229


>gi|228472644|ref|ZP_04057404.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276057|gb|EEK14813.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 243

 Score = 38.1 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 13/162 (8%)

Query: 84  YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL----MSCGVSHPYALQVDTG--FNRLGL 137
             +   + K I   ++   + S+ +     KL       G      +QV+T    ++ G+
Sbjct: 80  GHLQTNKIKDILKYDVS-CVESLDRYDLAEKLHQKLSQAGREMDVFIQVNTSGEESKFGV 138

Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH------VNSVQLERFRTLISHYKG 191
           + +EAL  T          +  +++    + +          + S+Q + F   +   + 
Sbjct: 139 APEEALALTQQVAQLPTLHIRGLMTIGLFSAEEDKVRKCFQLLKSIQQQIFALNLPDVQP 198

Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233
            E S+  S  + +       + R G +++G     +  +  +
Sbjct: 199 HELSMGMSGDLEVAIAEGATIVRVGTAIFGQRIYPDSYYWNE 240


>gi|227823450|ref|YP_002827423.1| ornithine decarboxylase SpeF [Sinorhizobium fredii NGR234]
 gi|227342452|gb|ACP26670.1| ornithine decarboxylase SpeF [Sinorhizobium fredii NGR234]
          Length = 377

 Score = 38.1 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 11/123 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+ +      ++     VK N A      +I   L   G       V  +
Sbjct: 20  LVVDLDIVRDNFKAFRHALPDSAIYYAVKANPA-----PEILRLLAGLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  ++                   +  I     L   + +V       K+          
Sbjct: 75  EMALE---AGATPSRISYGNTIKKERDIARAHALGINLFAVDSHEEVEKVARAAPGARVF 131

Query: 126 LQV 128
            +V
Sbjct: 132 CRV 134


>gi|330879120|gb|EGH13269.1| hypothetical protein PSYMP_23901 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 359

 Score = 38.1 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 21/219 (9%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----L 99
              +  A   AG     V++++E          + +F    I PG+             L
Sbjct: 28  SLPVIQAQMAAGASGVTVSTLKEAEHCFAEGI-SDVFYAVAIAPGKLDQALTLRRNGCRL 86

Query: 100 IPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQL 157
             +  SV                    +++D   +R GL++++ AL     +  +   QL
Sbjct: 87  SLLTDSVVAAQAIVAFGQQHDEQFEVWIEIDCDGHRSGLNVEDNALIEVAKTLVEGGMQL 146

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLI----------SHYKGIEASLASSSGILLGPN 207
             +++H   + D  S      L     L+          +     E S+ S+   L    
Sbjct: 147 RGVMTHAGSSYDLDSPEALQALAEQERLLCVSAAERIRDAGLPCPEVSIGSTPTALSAQG 206

Query: 208 YHFQL-TRPGISLY--GGTDKINKSHPMQTVVTAEARII 243
                  R G+ ++       I      + V++    +I
Sbjct: 207 LAGVTEVRAGVYVFFDLVMHNIGVCRADELVLSVLTTVI 245


>gi|213410262|ref|XP_002175901.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212003948|gb|EEB09608.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 408

 Score = 38.1 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 28/233 (12%)

Query: 53  YNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN--------LIPVIS 104
               V    V+++ E + +        I     +   + + +++ +        LI  ++
Sbjct: 78  LQGRVNAVVVSTIREAIAVVASGKVDDILYGLPVCRSRLEELYELSKNVKSVRLLIDNLA 137

Query: 105 SVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL--QEALDFTHNSFNKKLGQLSLIIS 162
            +  L  +++  S        +++D G +R GL +   E  D    + N      S II+
Sbjct: 138 HIDILKQFAQKHSIKRPFSVFIKIDMGTSRAGLQVGSPELQDLIDTTLNA-----SGIIN 192

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222
                        +  +E  R  +      E   A+ +   +          P +   G 
Sbjct: 193 LFGFYCHAGHSYGASSIEEARNYLLD----EIRAANVAAEYVHKKNRST---PLVLSVGA 245

Query: 223 TDKIN--KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI 273
           T   +  K+    +V     R+    +   G       Q+  T    ++  A 
Sbjct: 246 TPTAHATKAWIADSVPKLYGRL----EIHTGNYAFCDLQQAATGCVSVSNIAC 294


>gi|229918555|ref|YP_002887201.1| alanine racemase domain protein [Exiguobacterium sp. AT1b]
 gi|229469984|gb|ACQ71756.1| alanine racemase domain protein [Exiguobacterium sp. AT1b]
          Length = 217

 Score = 38.1 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 18/161 (11%)

Query: 46  EKIAPALYNAGVQDFFVTSVE------EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL 99
             +A ALY  G++DF     +      EG+        AR   +  +   + + I D   
Sbjct: 34  VDVANALYAEGIRDFGENRPDALLEKVEGM-----PKDARFHFIGTLQTRKVRQIIDY-- 86

Query: 100 IPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGF--NRLGLSLQEALDFTHNSFNKKLGQ 156
           +  I S+ +L+  +++      +    +QV+T    ++ GL ++E + F  N       +
Sbjct: 87  VAAIHSLDRLSLAAEIDKRANGTIDCFVQVNTSGEDSKHGLEIEEVVPFIENCKQYPHIR 146

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           +  +++           V      R R L    K      A
Sbjct: 147 IIGLMTM--APFTEEESVLRETFRRLRHLRDEVKANAYDHA 185


>gi|260102956|ref|ZP_05753193.1| aspartate alanine antiporter [Lactobacillus helveticus DSM 20075]
 gi|260083241|gb|EEW67361.1| aspartate alanine antiporter [Lactobacillus helveticus DSM 20075]
          Length = 377

 Score = 38.1 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           ITD   + VGD++ I GP    + +  A  T  Y+ +  I
Sbjct: 162 ITDYTQLTVGDHVTIIGP---ANYLTNAIKTIGYEKVTGI 198


>gi|332996432|gb|EGK16059.1| alanine racemase, N-terminal domain protein [Shigella flexneri
           VA-6]
          Length = 387

 Score = 38.1 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 64/235 (27%), Gaps = 29/235 (12%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVI 103
           A  L   G         +E   +R       +      V    H   + +   T++I V 
Sbjct: 70  AEKLLALGYSGIVAVDYKEARVMRRAGL--PVAHQGHLVQIPCHQVADAVEQGTDIITVF 127

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQV--DTGF----NRLGLSLQEALDFTHNSFNKKLGQL 157
           +        +  +  G   P  L+V  D  F       G       +            L
Sbjct: 128 TLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLYPGQESGFVQHSLHEVIAEIKKLPGLHL 187

Query: 158 SLIISHLACADDPSSH---------VNSVQ-LERFRTLISHYKGIEASLASSSGIL-LGP 206
           + + +H  C     +             VQ  ++        + +    A+S   L L  
Sbjct: 188 AGL-THFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNVPSATSCTSLPLLA 246

Query: 207 NYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
            Y      PG +L G      +   P +  +   + I        G+   YGG  
Sbjct: 247 EYGATHAEPGHALTGTIPANQQGDQPERIAMLWLSEISH---HFRGDSYCYGGGY 298


>gi|332750374|gb|EGJ80785.1| alanine racemase, N-terminal domain protein [Shigella flexneri
           4343-70]
          Length = 382

 Score = 38.1 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 64/235 (27%), Gaps = 29/235 (12%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVI 103
           A  L   G         +E   +R       +      V    H   + +   T++I V 
Sbjct: 65  AEKLLALGYSGIVAVDYKEARVMRRAGL--PVAHQGHLVQIPCHQVADAVEQGTDIITVF 122

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQV--DTGF----NRLGLSLQEALDFTHNSFNKKLGQL 157
           +        +  +  G   P  L+V  D  F       G       +            L
Sbjct: 123 TLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLYPGQESGFVQHSLHEVIAEIKKLPGLHL 182

Query: 158 SLIISHLACADDPSSH---------VNSVQ-LERFRTLISHYKGIEASLASSSGIL-LGP 206
           + + +H  C     +             VQ  ++        + +    A+S   L L  
Sbjct: 183 AGL-THFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNVPSATSCTSLPLLA 241

Query: 207 NYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
            Y      PG +L G      +   P +  +   + I        G+   YGG  
Sbjct: 242 EYGATHAEPGHALTGTIPANQQGDQPERIAMLWLSEISH---HFRGDSYCYGGGY 293


>gi|307320836|ref|ZP_07600246.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
 gi|306893546|gb|EFN24322.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
          Length = 352

 Score = 38.1 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 37/219 (16%)

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
             +     G      ++ +TG +R G+ +  EA             +   +++       
Sbjct: 117 LAAFFADAGKPLTVLVECNTGADRCGVGTPSEAARLARRIAEAPGLRFGGLMT-----YP 171

Query: 170 PSSHVNSVQLERFR---TLISHYKGIEASLASSSGI------LLGPNYHFQLTRPGISLY 220
           P+     VQ   F      +   +G+E    +S G          P       RPG  +Y
Sbjct: 172 PADGAARVQ--AFMSEAKRLIEAEGLEVPCITSGGTPGMMQAAEAPIASE--HRPGTYIY 227

Query: 221 GGTDKINK--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI----G 274
                + +  +      +T  A ++ +             +  +   S +  + +    G
Sbjct: 228 NDRSLVARGVASWEDCALTVLATVVSV---------PSENRAIIDAGSKVLTSDLLGLTG 278

Query: 275 YADGYPL---TLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
           Y          +  L  EH   V  G  G   G +V I+
Sbjct: 279 YGHVLGRDDIRIDQLSEEHGRLVSDGPIGLHVGELVRIV 317


>gi|220927870|ref|YP_002504779.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
 gi|219998198|gb|ACL74799.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
          Length = 225

 Score = 38.1 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 52  LYNAGVQDFFVTSVEEG----VKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSV 106
           L   G   F  + V+E     + L+   PQ  + ++  +   + K      ++I  +   
Sbjct: 48  LLEIGHCHFGESRVQEAKSKWIDLKKLYPQTILHLIGPLQTNKVKDAIQLFDIIETLDRE 107

Query: 107 PQLTFYS-KLMSCGVSHPYALQVDTGFN--RLGLSLQEALDFTHNSFNKKLGQLSLII 161
                 + +L   G +    +QV+ G    + G++ +E   F +   N     +  ++
Sbjct: 108 KLAEKIADELRKTGKNPKIFIQVNIGMEVQKSGIAPEELKMFLNKCRNDYALDIKGLM 165


>gi|260430949|ref|ZP_05784920.1| alanine racemase domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414777|gb|EEX08036.1| alanine racemase domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 373

 Score = 38.1 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLA 165
            + S     G +   +L++D G +R GL+  +         +     LS ++    HLA
Sbjct: 129 AYLSLAADTGQTLRLSLEIDVGLHRGGLTPDQVAGVASRIADHAHATLSGVMGYEVHLA 187


>gi|255654463|ref|ZP_05399872.1| putative amino acid racemase [Clostridium difficile QCD-23m63]
 gi|296449186|ref|ZP_06890973.1| amino acid racemase [Clostridium difficile NAP08]
 gi|296880837|ref|ZP_06904785.1| amino acid racemase [Clostridium difficile NAP07]
 gi|296262005|gb|EFH08813.1| amino acid racemase [Clostridium difficile NAP08]
 gi|296428124|gb|EFH14023.1| amino acid racemase [Clostridium difficile NAP07]
          Length = 354

 Score = 38.1 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 122/364 (33%), Gaps = 64/364 (17%)

Query: 6   FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFV 62
           + RL+ID+  LK+N   ++ +    N + + V K         +++  A+ + G+     
Sbjct: 2   YPRLEIDIEKLKHNAKLISQMCHERNIKISFVTKSFC----AQKEVVKAICSEGIDHIAD 57

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121
           + ++    L+         ++      + + + +   I   S +  +   ++L  S  + 
Sbjct: 58  SRIQNLKNLQD--INLPKILIRIPMLSELEEVINYCDISFNSELGTIKKLNELCESKNII 115

Query: 122 HPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLAC--ADDPSSHVNSVQ 178
           H   L  D G  R G   +E   +        K  ++  I ++L C  A  PS       
Sbjct: 116 HKIVLMFDLGDLREGYFYEEDFFYNVREIIKLKNIKIIGIATNLTCYGAIIPS----REN 171

Query: 179 LERFRTLISHYKGI------EASLASSSGILL-----GPNYHFQLTRPGISLYGGTDKIN 227
           + R  ++    +G         S  +SS I L      P     L      L G      
Sbjct: 172 IGRLASIAQKMEGKFGINLEIVSGGNSSSIHLMTNDNMPEGITNLRIGESILLGRETAYG 231

Query: 228 KSHP--MQTVVTAEARIILIRK---ALAGELV--------SYGGQKKLTRDSLIAVAAIG 274
           ++     Q       +++  ++      GE+          Y  +  L R    A+ AIG
Sbjct: 232 ENINGTYQDAFKLICQVVECKEKPSVPIGEIGFDAFRNKPVYEDKGILKR----AIIAIG 287

Query: 275 YADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDY 333
                       D      + +     I G         + D  + D++++    ++GD 
Sbjct: 288 ----------KQDINIDSLIPIDTDIKILG--------ASSDHMILDVSNTKYDYKLGDS 329

Query: 334 IQIF 337
           ++  
Sbjct: 330 VEFL 333


>gi|327192608|gb|EGE59552.1| amino acid processing protein [Rhizobium etli CNPAF512]
          Length = 366

 Score = 38.1 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 68/266 (25%), Gaps = 52/266 (19%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE- 66
           R  ID   L  N   + +                  G     P +    +    V  V  
Sbjct: 23  RPVIDEDRLAANIARVQSYMDE-------------HGL-NFRPHIKTHKIPALAVAQVAA 68

Query: 67  -----------EGVKLRLYTPQARIFV---------LYGIHPGQEKIIFDTNLIPVISSV 106
                      E            I +         L  +    E+I   ++L  V  S 
Sbjct: 69  GAKGINCQKVTEAEVFAEAGFN-DILITFNILGQQKLERLARLNERI---SDLKVVADSE 124

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHL- 164
             +   +   S        ++ DTG  R G+ +  EA                 I+++  
Sbjct: 125 QTVDGLAAHFSGHKPLTVLVECDTGGGRCGVQTPDEAASLARRIAAADGLTFGGIVTYPK 184

Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF----QLTRPGISLY 220
             A        +  L R ++      GI   + S+ G       H        R G  +Y
Sbjct: 185 PQAAASVEAFIAETLNRLQS-----DGITCPIVSNGGTPSLFEAHLVKSATEHRAGTYIY 239

Query: 221 GGTDKINKSHPMQ--TVVTAEARIIL 244
                +   H  +    +   A ++ 
Sbjct: 240 NDRQMVRMGHCTEDDCAMHVLATVVS 265


>gi|114332299|ref|YP_748521.1| hypothetical protein Neut_2339 [Nitrosomonas eutropha C91]
 gi|114309313|gb|ABI60556.1| Protein of unknown function UPF0001 [Nitrosomonas eutropha C91]
          Length = 238

 Score = 38.1 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 69/190 (36%), Gaps = 27/190 (14%)

Query: 50  PALYNAGVQDFFVTSVEEGV-KLRLYTPQARI---FVLYGIHPGQEKIIFDTNLIPVISS 105
              + AG   F    ++EG+ K+R       I   F+   I   + K+I +      +  
Sbjct: 44  REAWEAGQTVFGENYLQEGLVKIRALA-DLPIEWHFI-GPIQSNKTKLIAENFSW--VHG 99

Query: 106 VPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL 159
           + +    ++L +        +     + V     + G+  ++A +       +   QL  
Sbjct: 100 IDREKIATRLSAARPESLPPLQVCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRG 159

Query: 160 IISHLACADDPSSHVNSVQLERFRTLISHYKGIE--------ASLASSSGILLGPNYHFQ 211
           I+     A    + V ++Q E+F+ +   Y+ ++         S+  S  +         
Sbjct: 160 IM-----AVPELTAVTALQREQFQMMREVYEQLKQKGFILDTLSMGMSEDLENAIAEGAT 214

Query: 212 LTRPGISLYG 221
           + R G +++G
Sbjct: 215 MVRIGTAIFG 224


>gi|134292751|ref|YP_001116487.1| alanine racemase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134135908|gb|ABO57022.1| alanine racemase domain protein [Burkholderia vietnamiensis G4]
          Length = 376

 Score = 38.1 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 8/146 (5%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIP 101
           ++  A   AG +   V++++E  +      +  ++ +  I P +            +L  
Sbjct: 47  QVVDAQIAAGARGITVSTLKEAEQFFASGVRDIVYAVGMI-PARLPQALALRRRGCDLKI 105

Query: 102 VISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSL 159
           V  S+      +      G      +++D   +R G+   + L      +       L  
Sbjct: 106 VADSLHTAQAIAAFGREHGERFEVWIEIDVDGHRSGIRPDDDLLIDVGRTLAAGGMTLGG 165

Query: 160 IISHLACADDPSSHVNSVQLERFRTL 185
           +++H   + +  +H   V +      
Sbjct: 166 VLAHAGSSYEYDTHDALVAIAEQERA 191


>gi|282897740|ref|ZP_06305739.1| Protein of unknown function UPF0001 [Raphidiopsis brookii D9]
 gi|281197419|gb|EFA72316.1| Protein of unknown function UPF0001 [Raphidiopsis brookii D9]
          Length = 224

 Score = 38.1 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 44/246 (17%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGV 57
           M S+   R+ I    ++        L  + R  AV   V          ++    Y AG+
Sbjct: 1   MTSSIAERVTI----IRA------QLPPSVRLIAVSKQV--------STQLMREAYRAGI 42

Query: 58  QDFFVTSVEEG----VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113
           +DF  + ++E     ++L+   P      +  +   + K   +  L   I SV  L    
Sbjct: 43  RDFGESRIQEAASKQIELQDL-PDITWHFIGHLQSNKAKKAVE--LFSWIHSVDNLHIAE 99

Query: 114 KLMSCGVSHPYAL------QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
           +L +   +   +L      ++     + G ++ + L         +  Q+  +++     
Sbjct: 100 RLHTIAQTTGASLCSCLQVKILPDPQKSGWTVPQLLTDLPFLSQYQNLQIQGLMTIPPWG 159

Query: 168 -------DDPSSHVNSVQ-LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL 219
                     +   N  Q +   +      + +  S+  S    L       + R G  L
Sbjct: 160 LKEEKILHVFNHTYNLAQEIACQKWANIGMREL--SMGMSGDYNLAVKAGATMVRLGTIL 217

Query: 220 YGGTDK 225
           +G   +
Sbjct: 218 FGNRPE 223


>gi|118475146|ref|YP_891540.1| carboxynorspermidine decarboxylase [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414372|gb|ABK82792.1| carboxynorspermidine decarboxylase [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 377

 Score = 38.1 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 33/198 (16%)

Query: 14  TALKNNWHSMNALS--GNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFVTSVEEGVK 70
            AL+NN   +  +S    A+    +K  A+  G  E ++  L  A         + E   
Sbjct: 16  AALENNLKILKNISDESGAKVLCALKGFAF-SGAMELVSKYLNGATCSG-----LHEAKY 69

Query: 71  LRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQV 128
            + +  +  I          +   +   +   V +S  Q   F SK +  G S    +  
Sbjct: 70  AKYHGFK-EIHTYSPAFSDDDIDEVLSISHHVVFNSFAQWNKFRSKSIKSGKSIGLRVNP 128

Query: 129 DTG------------FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN- 175
           +T             F+RLG++ ++  DF        L  +  +  H  C +   S    
Sbjct: 129 NTSASPTDMYNPCGEFSRLGIT-KDNFDF------SNLDGVEGLHFHALCEESAKSLEFV 181

Query: 176 -SVQLERFRTLISHYKGI 192
                E+FRT+I   K I
Sbjct: 182 LKAFEEQFRTIIPKMKWI 199


>gi|311897282|dbj|BAJ29690.1| hypothetical protein KSE_38940 [Kitasatospora setae KM-6054]
          Length = 343

 Score = 38.1 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 72/261 (27%), Gaps = 29/261 (11%)

Query: 26  LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85
           L+  A    V K N YG G  ++A      GV    V +     +         + VL  
Sbjct: 20  LAEFAGLVPVAKGNGYGFGNGRLAAEATRLGVPMLAVGTAA-EAEAVAGGFAGDLLVLTP 78

Query: 86  IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145
              G+ +     + +     V  +     L +        ++  T   R G++L E    
Sbjct: 79  YRAGEPEADLPADRV-----VRTVAHAEALAALPAGSRVVVECMTSMRRHGVALGELPRL 133

Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL-ISHYKGIEASLASSSG--- 201
                      +     HL       S          R +  +        L+  S    
Sbjct: 134 PVR-----HLTVEGFALHLPLDRPDGSDPVDEVAALVRAIGEAGLPTGTVYLSHLSAKDG 188

Query: 202 ---ILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258
                  P+  F   R  I                  +T+ A ++ +   + GE   Y  
Sbjct: 189 RRLAERFPDTEF---RSRIG-------TRLWLGEVEALTSRASVLDVTPVVRGERYGYRQ 238

Query: 259 QKKLTRDSLIAVAAIGYADGY 279
             K   D  + VA  G A G 
Sbjct: 239 H-KAPSDGHLLVATGGTAHGV 258


>gi|226942470|ref|YP_002797543.1| alanine racemase domain-containing protein [Azotobacter vinelandii
           DJ]
 gi|226717397|gb|ACO76568.1| alanine racemase domain protein [Azotobacter vinelandii DJ]
          Length = 234

 Score = 38.1 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 28/201 (13%)

Query: 48  IAPALYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103
           +    +  G +DF    ++E +    +L     +     +  I   + + I +      +
Sbjct: 42  VLREAFACGQRDFGENYLQEALAKQAEL--ADLELTWHFIGPIQSNKTRAIAEHFAW--V 97

Query: 104 SSVPQLTFYSKLMSCGVSHP------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL 157
            SV +     +L     +H         + V    ++ G   +E  +           +L
Sbjct: 98  HSVDRAKIAQRLSEQRPAHLPPLNICLQVNVSGEASKSGCEPEELAELAGAVAELPNLRL 157

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH-------- 209
             ++   A  +       + Q   F  L    + +   L      L     H        
Sbjct: 158 RGLM---AIPEPSDDP--AAQHAPFARLRELQESLGQHLGLDLDTLSMGMSHDLEAAIAE 212

Query: 210 -FQLTRPGISLYGGTDKINKS 229
                R G +L+G  D    S
Sbjct: 213 GATWVRIGTALFGARDYGQPS 233


>gi|121592921|ref|YP_984817.1| alanine racemase domain-containing protein [Acidovorax sp. JS42]
 gi|120605001|gb|ABM40741.1| alanine racemase domain protein [Acidovorax sp. JS42]
          Length = 393

 Score = 38.1 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 32/152 (21%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +DL A++ N   M   +         +A+               +IA  L  +G +  
Sbjct: 28  LVVDLDAMERNIQRMAEFAHKHQVRWRPHAKM----------HKSAEIALQLEWSGARGH 77

Query: 61  FVTSVEEGVKLRLYTPQARIF----VLYGIHPGQEKIIFDT------NLIPVISSVPQLT 110
            V  V E   L      A ++    VL G    +   +          L   + S   +T
Sbjct: 78  CVQKVSEAEAL-AAGGVADLYISNEVLGGAKLLRAARLAAQLAARGGRLGIAVDSAEGIT 136

Query: 111 FYSKLMSCGVS---HPYALQVDTGFNRLGLSL 139
             ++ M    S       +++D G  R G+  
Sbjct: 137 RLAEAMRVAGSDAGIDVFVEIDVGQGRCGVPP 168


>gi|24114644|ref|NP_709154.1| hypothetical protein SF3399 [Shigella flexneri 2a str. 301]
 gi|30065335|ref|NP_839506.1| hypothetical protein S4363 [Shigella flexneri 2a str. 2457T]
 gi|110807213|ref|YP_690733.1| hypothetical protein SFV_3386 [Shigella flexneri 5 str. 8401]
 gi|24053848|gb|AAN44861.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043597|gb|AAP19317.1| hypothetical protein S4363 [Shigella flexneri 2a str. 2457T]
 gi|110616761|gb|ABF05428.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|281602729|gb|ADA75713.1| Alanine racemase domain protein [Shigella flexneri 2002017]
 gi|313647323|gb|EFS11775.1| alanine racemase domain protein [Shigella flexneri 2a str. 2457T]
 gi|332749522|gb|EGJ79939.1| alanine racemase, N-terminal domain protein [Shigella flexneri
           K-671]
 gi|332750852|gb|EGJ81259.1| alanine racemase, N-terminal domain protein [Shigella flexneri
           2747-71]
 gi|332997407|gb|EGK17023.1| alanine racemase, N-terminal domain protein [Shigella flexneri
           K-218]
 gi|333012350|gb|EGK31731.1| alanine racemase, N-terminal domain protein [Shigella flexneri
           K-304]
          Length = 387

 Score = 38.1 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 64/235 (27%), Gaps = 29/235 (12%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVI 103
           A  L   G         +E   +R       +      V    H   + +   T++I V 
Sbjct: 70  AEKLLALGYSGIVAVDYKEARVMRRAGL--PVAHQGHLVQIPCHQVADAVEQGTDIITVF 127

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQV--DTGF----NRLGLSLQEALDFTHNSFNKKLGQL 157
           +        +  +  G   P  L+V  D  F       G       +            L
Sbjct: 128 TLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLYPGQESGFVQHSLHEVIAEIKKLPGLHL 187

Query: 158 SLIISHLACADDPSSH---------VNSVQ-LERFRTLISHYKGIEASLASSSGIL-LGP 206
           + + +H  C     +             VQ  ++        + +    A+S   L L  
Sbjct: 188 AGL-THFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNVPSATSCTSLPLLA 246

Query: 207 NYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
            Y      PG +L G      +   P +  +   + I        G+   YGG  
Sbjct: 247 EYGATHAEPGHALTGTIPANQQGDQPERIAMLWLSEISH---HFRGDSYCYGGGY 298


>gi|17547428|ref|NP_520830.1| hypothetical protein RSc2709 [Ralstonia solanacearum GMI1000]
 gi|17429731|emb|CAD16416.1| putative ipr001608 alanine racemase, n-terminal protein [Ralstonia
           solanacearum GMI1000]
          Length = 376

 Score = 38.1 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLI 100
           E +  A   AG Q   V++++E  +         I    G+ P +            +L 
Sbjct: 46  EPVVRAQLAAGAQGITVSTLKEAEQFFSAGI-CDIVYAVGMAPARLPQALALRRRGCDLK 104

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTH-NSFNKKLGQLS 158
            V  SV      +      G +    ++VD   +R G++  +    T      +   +L 
Sbjct: 105 IVADSVTCAQAIAAFGGEHGEAFDVWIEVDVDGHRSGIAPDDDRLITVGRVLAEGGMRLG 164

Query: 159 LIISHLACADD 169
            +++H   + +
Sbjct: 165 GVLAHAGSSYE 175


>gi|227536022|ref|ZP_03966071.1| alanine racemase domain protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244135|gb|EEI94150.1| alanine racemase domain protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 372

 Score = 38.1 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 63  TSVEEGVKLRLYTPQARIFV----LYGIHPGQEKIIF----DTNLIPVISSVPQLTFYSK 114
            +V E     ++  +  I +    +  +   +   +     +     ++ ++      SK
Sbjct: 71  ATVSEAELCAMHGIK-NILLAYQPVGQVKQNRWLTLIKKYPEILFSTIVDNLEVTNELSK 129

Query: 115 L-MSCGVSHPYALQVDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADD 169
           L  S        L ++TG NR G+       + L   H   N +   L +   HL   ++
Sbjct: 130 LGQSKNEIFSIYLDINTGMNRTGVEFKSNWDDLLFQIHELPNIQHLGLHIYDGHLHGTEN 189

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASL 196
             +H  S   E F  +      +E  L
Sbjct: 190 ERTHFAS---EAFSLIKEKLHTVEQKL 213


>gi|209965826|ref|YP_002298741.1| hypothetical protein RC1_2548 [Rhodospirillum centenum SW]
 gi|209959292|gb|ACI99928.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 241

 Score = 38.1 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 12/135 (8%)

Query: 50  PALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS 105
            A   AG + F    V+E       L+   P   + ++  +   + K      L  VI +
Sbjct: 58  RAALAAGQRVFGENRVQEAKAKWPALKAEYPDVELHLIGPLQTNKVKEAVA--LFDVIQT 115

Query: 106 VPQLTFYSKLMSCGVSHPYA----LQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSL 159
           V +      L +            ++V+TG      G++  E   F      +   Q++ 
Sbjct: 116 VDRPKLAQALAAECRRQNRWPRFYVEVNTGEEPQKAGIAPAEVGAFLAACKAEYGVQVAG 175

Query: 160 IISHLACADDPSSHV 174
           +++     D+PS H 
Sbjct: 176 LMAIPPAEDEPSPHF 190


>gi|16264461|ref|NP_437253.1| putative amino acid processing enzyme, low specificity D-threonine
           aldolase protein [Sinorhizobium meliloti 1021]
 gi|15140598|emb|CAC49113.1| amino acid aldolase or racemase [Sinorhizobium meliloti 1021]
          Length = 352

 Score = 38.1 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 98/343 (28%), Gaps = 76/343 (22%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCE-----------KIAPALYNAGV 57
           + +DL   + N  +  A +                G             ++A    +AG 
Sbjct: 10  VLVDLDIARRNVLAFQAYADR-------------HGIRVRPHIKTHKLPQMAELQLDAGA 56

Query: 58  QDFFVTS--VEEGVKLRLYTPQ-ARIFV---LYGIHPGQEKIIFDTNLIPVISSVPQLT- 110
               +T   V E   +     +   + +   L G    +   +   N    +S V     
Sbjct: 57  --IGITCQKVTEAEAMVDGGARIKDVLITYNLLG--EQKLARLARLNERVTVSVVADNAT 112

Query: 111 ----FYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLA 165
                 +     G      ++ +TG +R G+ +  EA             +   +++   
Sbjct: 113 VVDGLAAFFADAGKPLTVLVECNTGADRCGVGTPSEAARLARRIAEAPGLRFGGLMT--- 169

Query: 166 CADDPSSHVNSVQLERFR---TLISHYKGIEASLASSSGI------LLGPNYHFQLTRPG 216
               P+     VQ   F      +   +G+E    +S G          P       RPG
Sbjct: 170 --YPPADGAARVQ--AFMSDAKRLIEAEGLEVPCITSGGTPGMMQAAEAPIASE--HRPG 223

Query: 217 ISLYGGTDKINK--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI- 273
             +Y     + +  +      +T  A ++ +             +  +   S +  + + 
Sbjct: 224 TYIYNDRSLVARGVASWEDCALTVLATVVSV---------PSENRAIIDAGSKVLTSDLL 274

Query: 274 ---GYADGYPL---TLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310
              GY          +  L  EH   V  G  G   G +V I+
Sbjct: 275 GLTGYGHVLGRDDIRIDQLSEEHGRLVSDGQIGLQVGELVRIV 317


>gi|324515172|gb|ADY46111.1| Protein YIF1A [Ascaris suum]
          Length = 391

 Score = 38.1 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 16/127 (12%)

Query: 160 IIS--HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSS------GILLGPNYHFQ 211
           I++   L+ A    S     Q E+F   +S ++        ++      GILL P +   
Sbjct: 111 IMTDPMLSAAKQIGSQFAEQQKEKFAKYLSAFQLKYYFAVDNAYVGKKLGILLFPFFRTD 170

Query: 212 LTRP---GISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268
                    +       +N       ++     I      ++G ++   G+    +  +I
Sbjct: 171 WAVRYDNSDAPIPPRSDVNAPDLYIPIMAFVTYI-----LISGFVLGIQGRFTPEQLGII 225

Query: 269 AVAAIGY 275
              A+ Y
Sbjct: 226 TTNAMAY 232


>gi|317121717|ref|YP_004101720.1| alanine racemase domain protein [Thermaerobacter marianensis DSM
           12885]
 gi|315591697|gb|ADU50993.1| alanine racemase domain protein [Thermaerobacter marianensis DSM
           12885]
          Length = 230

 Score = 38.1 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 19/162 (11%)

Query: 46  EKIA--PALYNAGVQDFFVTSVEEGVKLR----LYTPQARIFVLYGIHPGQEKIIFDTNL 99
             +A     Y AG++ F     +E    R     +        +  +   + K I     
Sbjct: 37  VPVAAMREAYAAGIRHFGENRAQEA---RDKFPAFGDDVHWHFVGRLQTNKVKYIARHC- 92

Query: 100 IPVISSVPQLTFYSK----LMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKK 153
             ++ S+ +L    +       CG   P  ++V+      + GL  ++ + F H      
Sbjct: 93  -HLLHSLDRLALAQEVDRRASRCGRVLPCLVEVNVAGEATKAGLPPEKVIPFLHQVAGWP 151

Query: 154 LGQLSLIISHLACADDPSS--HVNSVQLERFRTLISHYKGIE 193
             ++  +++    AD+P     V     E         +G+ 
Sbjct: 152 GLRVVGLMTVAPRADNPEEVRPVFRRLRELAEEAARQCRGLP 193


>gi|295399727|ref|ZP_06809708.1| alanine racemase domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111754|ref|YP_003990070.1| alanine racemase domain protein [Geobacillus sp. Y4.1MC1]
 gi|294978130|gb|EFG53727.1| alanine racemase domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216855|gb|ADP75459.1| alanine racemase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 225

 Score = 38.1 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 35/218 (16%)

Query: 12  DLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKI--APALYNAGVQDF----- 60
           +L  ++ N  +     G    + R  AV K   Y      +  A     AG+ D      
Sbjct: 6   NLAIIRENIEAACQRVGRDPADIRIVAVTK---Y----VSVERAKEALEAGITDLGENRD 58

Query: 61  -FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             +    E +       +     +  +   + K I D   +  I S+ +++   ++    
Sbjct: 59  DGLLQKYEAL-----GNEPTWHFIGTLQSRKVKHIIDK--VDYIHSLDRMSLAKEIEKRA 111

Query: 120 VSHP---YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVN 175
                    + V     + GL+ +E + F     +    ++  +++     DD S     
Sbjct: 112 TKRMKCFVQVNVSGEATKHGLAKEEVIPFIEQLRDFSRIEVIGLMTMAPYTDDESVLRSC 171

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT 213
             QL+  +  +         + ++    L         
Sbjct: 172 FRQLKLLQENVQAL-----HIPNAPCTELSMGMSNDYV 204


>gi|319775029|ref|YP_004137517.1| hypothetical protein HICON_03630 [Haemophilus influenzae F3047]
 gi|329123064|ref|ZP_08251635.1| YggS family pyridoxal phosphate enzyme [Haemophilus aegyptius ATCC
           11116]
 gi|317449620|emb|CBY85826.1| conserved hypothetical protein [Haemophilus influenzae F3047]
 gi|327471995|gb|EGF17435.1| YggS family pyridoxal phosphate enzyme [Haemophilus aegyptius ATCC
           11116]
          Length = 237

 Score = 38.1 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 80/239 (33%), Gaps = 45/239 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +      A           +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKT-------KPISAILSAYQAGQTAFG 54

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-----PGQEKIIFDT-NLIPVISSVPQLTFYSKL 115
              V+EGV+ ++   +++   L           + +++ +  + +  +         ++ 
Sbjct: 55  ENYVQEGVE-KIQYFESQEVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQ 113

Query: 116 M---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ G+  +E L    +  N     L  ++   A       
Sbjct: 114 RPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLM---AIPAPTDK 170

Query: 173 HVNSVQLERFRTLISHYKGIEASLAS------SSGILLGPNY----HFQLTRPGISLYG 221
              + Q   FR +   ++ ++ +L +      S G+             + R G +++G
Sbjct: 171 I--AEQEAMFRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFG 227


>gi|289207307|ref|YP_003459373.1| diaminopimelate decarboxylase [Thioalkalivibrio sp. K90mix]
 gi|288942938|gb|ADC70637.1| diaminopimelate decarboxylase [Thioalkalivibrio sp. K90mix]
          Length = 434

 Score = 38.1 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 28/179 (15%)

Query: 31  RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK--LRLYTPQARIFVLYGI-- 86
           +    VK N+       +   L   G   F + S  E ++  LR     A++ V  G+  
Sbjct: 54  QVCFAVKANS----ALGVLNVLARLGA-GFDIVSGGE-LERVLRAGGDPAKV-VFSGVGK 106

Query: 87  HPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSC-GVSHPYALQVD------------TGF 132
              + +      +    + S P+L     + +  GV+ P +++V+            TG 
Sbjct: 107 TAAEMRRALKVGIHCFNVESAPELERLESIAAEMGVTAPVSIRVNPDVDAETHPYIATGL 166

Query: 133 --NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189
             N+ G++++EA        + +  + + +  H+              L+R  TL+   
Sbjct: 167 RENKFGVAIEEAPALYARVRDSQHLEATGVDFHIGSQLTRIDPFTDA-LKRVLTLVDQL 224


>gi|169351607|ref|ZP_02868545.1| hypothetical protein CLOSPI_02387 [Clostridium spiroforme DSM 1552]
 gi|169291829|gb|EDS73962.1| hypothetical protein CLOSPI_02387 [Clostridium spiroforme DSM 1552]
          Length = 220

 Score = 38.1 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 16/149 (10%)

Query: 84  YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN------RLGL 137
             + P + K I D   + +I SV   +   ++      H   ++V    N      + G 
Sbjct: 75  GTLQPNKVKYIIDK--VDLIHSVDSYSLIKEIEKQANKHNLVMKVLIQVNISKEESKHGF 132

Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLERFRTLISHYK-----G 191
            ++E  +      N    ++  ++        + +     +  + F  L   Y       
Sbjct: 133 KVEEIEEVFDTLKNYPHIEVKGLMMMAPNIEAEKTREYFKLTQDLFNQLKIKYPEYSLTE 192

Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLY 220
           +   +++   I L   Y   + R G SL+
Sbjct: 193 LSMGMSNDYKIAL--EYGATMVRIGSSLF 219


>gi|158422357|ref|YP_001523649.1| putative amino acid aldolase [Azorhizobium caulinodans ORS 571]
 gi|158329246|dbj|BAF86731.1| putative amino acid aldolase [Azorhizobium caulinodans ORS 571]
          Length = 369

 Score = 38.1 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 55/197 (27%), Gaps = 38/197 (19%)

Query: 9   LKIDLTALKNNWHSM--------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           L +DL A + N  +M          L  +A+T               IA      G    
Sbjct: 21  LILDLDAFEANLDTMAALLKPTGAKLRAHAKT----------HKSAVIARLQMQRGAVGQ 70

Query: 61  FVTSVEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYS------ 113
            V  V E   L        I V    + P + K +        +SS+ ++   +      
Sbjct: 71  CVQKVGEAEALAQAGIN-DILVSNEVVEPRKLKRLA------ALSSIARVQLCADDPAAI 123

Query: 114 -----KLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACA 167
                   + G+     ++++ G  R GL     A +        K      + ++   A
Sbjct: 124 PPIEAAAEAAGIRLSVLVEIEVGAKRCGLEPGAPAAELAARIAGSKHLTFGGLQAYYGSA 183

Query: 168 DDPSSHVNSVQLERFRT 184
                     Q   F  
Sbjct: 184 QHKRQPEERRQAIAFAA 200


>gi|188581259|ref|YP_001924704.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium populi BJ001]
 gi|179344757|gb|ACB80169.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium populi BJ001]
          Length = 388

 Score = 38.1 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 68/233 (29%), Gaps = 39/233 (16%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE--- 67
           DL  +++N+ +      + R    VK N A      ++   L   G   F   SV E   
Sbjct: 26  DLDVVRDNYTAFARALPDTRVFYAVKANPA-----PEVLRLLAEMG-SCFDTASVAEIEM 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-- 125
            +        A           +  I+    L   + +V       K++S       A  
Sbjct: 80  ALA---AGATAERVSFGNTIKKERDIVRALKLGIRLFAVDCQAEVEKILSATTQAGVAAA 136

Query: 126 -------LQVDTG-----FNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADD 169
                  +  D        +R  G   +     L+  H       G    + S  A  + 
Sbjct: 137 DVQVFCRILCDGAGADWPLSRKFGCEPEMAVNVLEHAHRHGLNAYGVSFHVGSQQANTEA 196

Query: 170 PSSH-VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
                 ++ Q+  FR      +GI  S+ +  G             PG+  YG
Sbjct: 197 WDGALASASQI--FREC--ALRGIGLSMVNLGGGFPTKYLKQ---VPGVESYG 242


>gi|302389570|ref|YP_003825391.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
           16646]
 gi|302200198|gb|ADL07768.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
           16646]
          Length = 229

 Score = 38.1 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 14/141 (9%)

Query: 95  FDTNLIPVISSVPQLTFYSKLMSC----GVSHPYALQVDTGFNRL--GLSLQEALDFTHN 148
           +   L  +I SV      +++       G      +QV+ G  +   G   +E  +    
Sbjct: 88  YAVKLFSMIQSVDSYELAAEIDKRAGMLGKVMDVLIQVNIGREKTKFGAEYEEIPELIKK 147

Query: 149 SFNKKLGQLSLIISHLACADDPSS--HVNSVQLERFRTLISH-YKGIEASLASSSGILLG 205
                  ++  +++     +DP           E F  + S   + +E S   S G+   
Sbjct: 148 VSTLAHVKVRGLMAIAPFKEDPEDVRPFFRKMRELFTKIKSQELENVEMSFL-SMGMTHD 206

Query: 206 PNY----HFQLTRPGISLYGG 222
            +        + R G  ++G 
Sbjct: 207 FHIAIEEGSNMIRIGTGIFGP 227


>gi|222107141|ref|YP_002547932.1| hypothetical protein Avi_6243 [Agrobacterium vitis S4]
 gi|221738320|gb|ACM39216.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 366

 Score = 37.7 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 73/260 (28%), Gaps = 46/260 (17%)

Query: 11  IDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           ID   L  N   +         A   + +T               +A     AG      
Sbjct: 26  IDEDRLAANIARVQSYMDVHSLAFRPHIKT----------HKIPPLARQQQEAGATGI-- 73

Query: 63  TS---VEEGVKLRLYTPQARIFV-LYGIHPGQEKIIFDTN-----LIPVISSVPQLTFYS 113
            +   + E         +  I +    + P +   +   N     L  V  S+  +   S
Sbjct: 74  -NCQKITEAEVFAEAGFE-DILITFNILGPEKLVRLSALNEQISGLKVVADSIVTVEGLS 131

Query: 114 KLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
              +        ++ DTG  R G+ +  +A+         K  +   I++       P +
Sbjct: 132 NYFADRKPLTVLVECDTGGGRCGVQTPADAVGLAQAISASKGLRFGGIMT------YPKA 185

Query: 173 HVNSVQLERFRTLISHYK--GIEASLASSSGILLGPNYHF----QLTRPGISLYGGTDKI 226
           H   V    F  +++     GI   + S+ G     + H        R G  +Y      
Sbjct: 186 HTEQVVESFFAQILTSLTTLGIACPIVSNGGTPSLFSAHLVPSATEHRAGTYIYSDRSMA 245

Query: 227 NKSHP--MQTVVTAEARIIL 244
              H       +   A ++ 
Sbjct: 246 KAGHGTLDDCAMHILATVVS 265


>gi|301168748|emb|CBW28339.1| predicted enzyme [Haemophilus influenzae 10810]
          Length = 237

 Score = 37.7 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 79/239 (33%), Gaps = 45/239 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +      A           +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKT-------KPISAILSAYQAGQTAFG 54

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-----PGQEKIIFDT-NLIPVISSVPQLTFYSKL 115
              V+EGV+ ++   +++   L           + +++ +  + +  +         ++ 
Sbjct: 55  ENYVQEGVE-KIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQ 113

Query: 116 M---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ G+  +E L    +  N     L  ++   A       
Sbjct: 114 RPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLM---AIPAPTDK 170

Query: 173 HVNSVQLERFRTLISHYKGIEASLAS------SSGILLGPNY----HFQLTRPGISLYG 221
              + Q   FR +   ++ ++  L +      S G+             + R G S++G
Sbjct: 171 I--AEQEAVFRKMSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCSSTMVRIGTSIFG 227


>gi|116747509|ref|YP_844196.1| diaminopimelate decarboxylase [Syntrophobacter fumaroxidans MPOB]
 gi|116696573|gb|ABK15761.1| diaminopimelate decarboxylase [Syntrophobacter fumaroxidans MPOB]
          Length = 434

 Score = 37.7 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 72  RLYTPQARIFVLYGI---HPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQ 127
           R         V  G+       +  + +  L+  I S  +L    ++  + G     AL+
Sbjct: 100 RQAGIAPDKIVYSGVGKTLEEIDYALRENILMFNIESTQELEAINARAAAFGCRARIALR 159

Query: 128 VD------------TGF--NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
           V+            TG   N+ G+ +  A+     + +    ++  +  H+       S 
Sbjct: 160 VNPDVDPNTHPYISTGMKKNKFGIEIDSAVKAYERARSLDHVEVVGVDCHIGSQLTEISP 219

Query: 174 VNSVQLERFRTLISHYKGIEASL 196
                L+R R LI   + +  ++
Sbjct: 220 FVDA-LKRLRLLIEKLEAVGITI 241


>gi|229818593|ref|YP_002880119.1| alanine racemase domain protein [Beutenbergia cavernae DSM 12333]
 gi|229564506|gb|ACQ78357.1| alanine racemase domain protein [Beutenbergia cavernae DSM 12333]
          Length = 436

 Score = 37.7 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 25/146 (17%)

Query: 9   LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPAL----YNAGVQDFFV 62
           L +D  AL++N  ++ A         A          G   +AP L     +AG     V
Sbjct: 48  LTLDAAALEHNLATLAAWCAEHGVDLAP--------HGKTTMAPQLWHRQLDAGAWAITV 99

Query: 63  TSVEEGVKLRLYTPQARIFVLY------GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
            +  +    R      RI +        GI      +  D     ++S V  +   ++L 
Sbjct: 100 ATPWQAQVARAAGV-PRILLANALVDPAGIAWAAFAVADDAGPTELLSWVDGVDGVARLE 158

Query: 117 SC----GVSHPYALQVDTGFNRLGLS 138
                 G   P  + V+ G  R G  
Sbjct: 159 DALASHGAPVPLDVLVELGTARTGAR 184


>gi|190895618|ref|YP_001985910.1| amino acid processing protein [Rhizobium etli CIAT 652]
 gi|190699563|gb|ACE93647.1| putative amino acid processing protein [Rhizobium etli CIAT 652]
          Length = 366

 Score = 37.7 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 69/266 (25%), Gaps = 52/266 (19%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE- 66
           R  ID   L  N   + +                  G     P +    +    V  +  
Sbjct: 23  RPVIDEDRLAANIARVQSYMDE-------------HGL-NFRPHIKTHKIPALAVAQIAA 68

Query: 67  -----------EGVKLRLYTPQARIFV---------LYGIHPGQEKIIFDTNLIPVISSV 106
                      E            I +         L  +    E+I   ++L  V  S 
Sbjct: 69  GAKGINCQKVTEAEVFAEAGFN-DILITFNILGQQKLERLARLNERI---SDLKVVADSE 124

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHL- 164
             +   +   S        ++ DTG  R G+ +  EA                 I+++  
Sbjct: 125 QTVDGLAAHFSGHKPLTVLVECDTGGGRCGVQTPDEAASLARRIAAADGLTFGGIVTYPK 184

Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF----QLTRPGISLY 220
             A        +  L+R ++      GI   + S+ G       H        R G  +Y
Sbjct: 185 PQAAGAVEAFIAETLDRLQS-----DGIACPIVSNGGTPSLFEAHLVPSATEHRAGTYIY 239

Query: 221 GGTDKINKSHPMQ--TVVTAEARIIL 244
                +   H  +    +   A ++ 
Sbjct: 240 NDRQMVRMGHCGEDDCAMHVLATVVS 265


>gi|115397579|ref|XP_001214381.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114192572|gb|EAU34272.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1284

 Score = 37.7 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 19/124 (15%)

Query: 45  CEKIAPALYNAGVQDF---------FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF 95
            +++A     AG+  F          V  +      RL   +ARIFV  G   G    I 
Sbjct: 95  LDELARKAQEAGITLFAATEGNHGRAVAFMA-----RLLGVRARIFVPLGTDEGTRVRIA 149

Query: 96  DTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV-DTGFNRLGLSLQEALDFTHNSFNKKL 154
                 ++S         +        P  + + DT F+      +E   +    +   L
Sbjct: 150 SEGAEVLVSRGNYDDAVREAAGAVRESPAGVLIQDTAFDG----YEEVPAWIVEGYGTML 205

Query: 155 GQLS 158
            ++ 
Sbjct: 206 AEVE 209


>gi|295115171|emb|CBL36018.1| pyridoxal phosphate enzyme, YggS family [butyrate-producing
           bacterium SM4/1]
          Length = 200

 Score = 37.7 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 9/124 (7%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYT---PQARIFVLYGIHPGQEKIIFDTN-LIP 101
            ++    Y AG +DF    V+E ++   +       R  ++  +   + + + D   LI 
Sbjct: 38  VEMLQEAYEAGSRDFGENHVQEILE--KHGQMPEDVRWHMIGHLQKNKVRQVIDKVVLIH 95

Query: 102 VISSV---PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
            + +V    Q+   +      +     + V    ++ G   +E  +            + 
Sbjct: 96  SVDTVGLAEQIEKEAAKRDLDIDILLEVNVAGEESKFGFCPEEVEEAVRKISLLPHVHIK 155

Query: 159 LIIS 162
            +++
Sbjct: 156 GLMT 159


>gi|332763637|gb|EGJ93876.1| alanine racemase, N-terminal domain protein [Shigella flexneri
           2930-71]
          Length = 356

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 64/235 (27%), Gaps = 29/235 (12%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVI 103
           A  L   G         +E   +R       +      V    H   + +   T++I V 
Sbjct: 39  AEKLLALGYSGIVAVDYKEARVMRRAGL--PVAHQGHLVQIPCHQVADAVEQGTDIITVF 96

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQV--DTGF----NRLGLSLQEALDFTHNSFNKKLGQL 157
           +        +  +  G   P  L+V  D  F       G       +            L
Sbjct: 97  TLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLYPGQESGFVQHSLHEVIAEIKKLPGLHL 156

Query: 158 SLIISHLACADDPSSH---------VNSVQ-LERFRTLISHYKGIEASLASSSGIL-LGP 206
           + + +H  C     +             VQ  ++        + +    A+S   L L  
Sbjct: 157 AGL-THFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNVPSATSCTSLPLLA 215

Query: 207 NYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEARIILIRKALAGELVSYGGQK 260
            Y      PG +L G      +   P +  +   + I        G+   YGG  
Sbjct: 216 EYGATHAEPGHALTGTIPANQQGDQPERIAMLWLSEISH---HFRGDSYCYGGGY 267


>gi|260464329|ref|ZP_05812521.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium opportunistum WSM2075]
 gi|259029953|gb|EEW31237.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium opportunistum WSM2075]
          Length = 406

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 27/116 (23%)

Query: 35  VVKDNA------------YGLGCEK------IAPALYNAGVQDFFVTSVEEGVKLRLYTP 76
           V+K +A            Y     K      +   L  AGV  F V S  E   +R  +P
Sbjct: 27  VLKADARQFMGMFPGKTAY---AVKTNGEQIVLKTLVEAGVTAFDVASPGEFSAVRAVSP 83

Query: 77  QARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131
            A +  ++ +      K+  +   I VI S+      +KL         AL +D G
Sbjct: 84  DAEMLYMHPVKAQSDIKLALEKYAIRVI-SLDHEDEITKL----TRVVRALDIDPG 134


>gi|218437552|ref|YP_002375881.1| alanine racemase domain protein [Cyanothece sp. PCC 7424]
 gi|218170280|gb|ACK69013.1| alanine racemase domain protein [Cyanothece sp. PCC 7424]
          Length = 219

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 71/219 (32%), Gaps = 27/219 (12%)

Query: 20  WHSMNA-LSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75
            + +   L  + R  AV   V           I    Y AG++DF    ++E +  + + 
Sbjct: 7   INQIRQHLPSHVRLIAVTKQV--------SPDIMRQAYQAGIRDFGENRLQEALSKQEHL 58

Query: 76  PQARIFVL---YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP------YAL 126
                        +   + K + D+     I SV  L+   +L    V           +
Sbjct: 59  QDLPDICWHFIGHLQTNKAKKVLDS--FQWIHSVDSLSLLQRLEGYSVELSNPPQVCLQV 116

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV----NSVQLERF 182
           +V    N+ G ++ E L            ++  +++ L    D +  +     +  L + 
Sbjct: 117 KVLPDPNKYGWTIPELLQDLPRIEQCTQVKIQGLMTILPWGLDETETLKAFETTRDLAQE 176

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
               S  +  E S+  S    L       + R G  L+G
Sbjct: 177 LNERSQLQLRELSMGMSGDYHLAIKAGATMIRLGTILFG 215


>gi|15966628|ref|NP_386981.1| putative ornithine, DAP, or arginine decarboxylase protein
           [Sinorhizobium meliloti 1021]
 gi|307300337|ref|ZP_07580117.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium meliloti BL225C]
 gi|307319620|ref|ZP_07599046.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium meliloti AK83]
 gi|15075900|emb|CAC47454.1| Putative ornithine, DAP, or arginine decarboxylase [Sinorhizobium
           meliloti 1021]
 gi|306894742|gb|EFN25502.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium meliloti AK83]
 gi|306904503|gb|EFN35087.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium meliloti BL225C]
          Length = 379

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 11/123 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+ +      ++     VK N A      +I   L   G       V  +
Sbjct: 22  LVVDLDVVRDNFKAFRHALPDSAIYYAVKANPA-----PEILRLLAGLGSNFDCASVAEI 76

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  + L                  +  +     L   + +V       K+          
Sbjct: 77  E--MAL-DAGATPNRISYGNTIKKERDVARAHALGISLFAVDSHEEVEKIARAAPGARVF 133

Query: 126 LQV 128
            +V
Sbjct: 134 CRV 136


>gi|46110853|ref|XP_382484.1| hypothetical protein FG02308.1 [Gibberella zeae PH-1]
          Length = 461

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 23/137 (16%)

Query: 62  VTSVEEGVKL-------RLYTPQARIFVLYGIHPGQEKIIFDTN-------LIPVISSVP 107
           V+++ E   L       +    +  I     +   Q   +           +  +I    
Sbjct: 84  VSTISEIEHLLPLLKEYKEAGRRLDILYGLPLPRSQIPRLAALGAELGPDTISVLIDHPT 143

Query: 108 QLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSL-----QEALDFTHNSFNKKLGQLSLII 161
           QL                 L+VDTG++R GL          ++           +L  + 
Sbjct: 144 QLQSVKAFSQHAKFPAKVFLKVDTGYHRAGLPPLSLNKNGLIESLAQLEANGEAELLGLY 203

Query: 162 SHLACADDPSSHVNSVQ 178
           SH + +        + Q
Sbjct: 204 SHSSLSY---KDSTAEQ 217


>gi|300696992|ref|YP_003747653.1| diaminopimelate decarboxylase protein (lysA) [Ralstonia
           solanacearum CFBP2957]
 gi|299073716|emb|CBJ53236.1| putative diaminopimelate decarboxylase protein (lysA) [Ralstonia
           solanacearum CFBP2957]
          Length = 413

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 32/188 (17%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           DL  L+     ++A L         +K N+       +  A  +  V  + V S+ E V+
Sbjct: 23  DLDHLRERAGRLSAMLPPGCELFYAIKANS----DAPVL-AALDGAVAGYEVASLGEVVR 77

Query: 71  LRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPV-ISSVPQLTFYSKLM----------- 116
            R  +  ARI V  G      + +   +  +  + + S  QL     +            
Sbjct: 78  AREVSAHARI-VFGGPGKTDAELQGALERGIELIHVESELQLRRLDAVACRMGRCARVLL 136

Query: 117 ----------SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH-LA 165
                     S G      L +     + G+      D    +      ++  +  H L+
Sbjct: 137 RVNPNPLSADSAGKRPQGTLTMGGQPTQFGIEEDAVPDLIRLARGLAGVEVVGLHLHALS 196

Query: 166 CADDPSSH 173
              D  SH
Sbjct: 197 NNLDADSH 204


>gi|225021731|ref|ZP_03710923.1| hypothetical protein CORMATOL_01759 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945427|gb|EEG26636.1| hypothetical protein CORMATOL_01759 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 262

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 30/196 (15%)

Query: 16  LKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPALY--NAGVQDFFV 62
            + N+ ++     NA           R  AV K          I+ AL    AG+     
Sbjct: 29  FRANYQAVTERIANAAHAAGRDPADIRLIAVSKTF-------PISHALLAAEAGMTVLGE 81

Query: 63  TSVEE----GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYS-KLM 116
              +E        R+         +  +   + K I         + S+        +L 
Sbjct: 82  NRPQELAEKAQAFRIRGVDVTWCAIGHLQRNKAKEIAQFAAEFHALDSLRLAEALQHRLE 141

Query: 117 SCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
               +    +QV+T       G +  E      +       ++  +++    A  P   V
Sbjct: 142 LANRTLDVFIQVNTSHESQKSGFAPDEVAAILPSLATLDRLRVRGLMTM--AAFSPEESV 199

Query: 175 NSVQLERFRTLISHYK 190
                E+ RTL    +
Sbjct: 200 VRPSFEQLRTLRDQLQ 215


>gi|166031848|ref|ZP_02234677.1| hypothetical protein DORFOR_01549 [Dorea formicigenerans ATCC
           27755]
 gi|166028301|gb|EDR47058.1| hypothetical protein DORFOR_01549 [Dorea formicigenerans ATCC
           27755]
          Length = 244

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 93  IIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGF--NRLGLSLQEALDFTHNS 149
           II   +LI  + S+       K      V     ++V+ G   ++ G   +E  DF   +
Sbjct: 97  IIDKVDLIHSVDSLRLAEAIEKEAAKKHVIAKVLIEVNVGREESKFGFLPEELDDFVEKA 156

Query: 150 FNKKLGQLSLIISHLACADDPSS 172
            +    Q   +++     D+P  
Sbjct: 157 SDFSHIQFMGLMTSAPFVDNPEE 179


>gi|119499806|ref|XP_001266660.1| hypothetical protein NFIA_102480 [Neosartorya fischeri NRRL 181]
 gi|119414825|gb|EAW24763.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
          Length = 315

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 102 VISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQ-----EALDFTHNSFNKKLG 155
           +I    QL +  +     G+     L+VDTG++R G+          L+           
Sbjct: 1   MIDHPDQLAYLHQFHEVAGLPAGVFLKVDTGYHRAGVPPDMLNKNGLLEKVLLEERLGHA 60

Query: 156 QLSLIISHLACADDPSSH 173
           +L  + SH + +   +S 
Sbjct: 61  RLIGVYSHSSLSYAATSP 78


>gi|327194730|gb|EGE61574.1| metal-activated pyridoxal enzyme [Rhizobium etli CNPAF512]
          Length = 387

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 68/223 (30%), Gaps = 45/223 (20%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKD-N----AYGLG----CEKIAPALYN--AGV 57
           L +DL AL+ N   M   +         K  N    A   G       +   L     G 
Sbjct: 32  LILDLDALERNIRKMGDYA---------KAHNMRHRA--HGKMHKSVDVLR-LQEKLGGA 79

Query: 58  QDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFD-----TNLIPVISSVPQL 109
               V    V E         +  + V   +  P +   +         +I  +     +
Sbjct: 80  --IGVCCQKVSEAEVFVRGGIK-DVLVSNQVRDPAKIDRLARLPKLGARIIVCVDDPANV 136

Query: 110 -TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLI------I 161
               S     G +    +++D G  R G+S   A +D        +  + + +      +
Sbjct: 137 AELASAARKHGTTIECFVEIDVGAGRCGVSSSAAVVDLAKAIAGAQGLRFAGVQAYQGAM 196

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
            H+    D  + ++   + + +  +   K  G+E  L S  G 
Sbjct: 197 QHIDKYADRKAKLDLA-VAQVKEAVDALKKAGLEPELVSGGGT 238


>gi|310815136|ref|YP_003963100.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
 gi|308753871|gb|ADO41800.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
          Length = 373

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 31/179 (17%)

Query: 9   LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPA-LYNAGVQD 59
           L IDL     N   M A +         +A+T               IA   +   G   
Sbjct: 27  LVIDLDVFDANIARMKAYAAQMGVALRPHAKT----------HKSADIALLQMQQGGA-- 74

Query: 60  FFVTS--VEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDT--NLIPVISSVP---QLTF 111
             V    V E V L        I +    + P +   +      +   + +        +
Sbjct: 75  VGVCCQKVSEAVALADAGVT-DILIANEVVGPAKVAALAALAGRIKLAVCADHPVQVAAY 133

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADD 169
            +  +  GV+    +++D G +R G+   Q A+D             + + S+   A  
Sbjct: 134 SAAAVQAGVTLDVLVEIDCGSHRCGVQPGQPAVDLALAIDAAPNLHFAGLQSYFGRAQH 192


>gi|115491735|ref|XP_001210495.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114197355|gb|EAU39055.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 586

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 102 VISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQ-----EALDFTHNSFNKKLG 155
           +I    QL + S+     G +    L+VDTG++R G+          L+           
Sbjct: 35  MIDHPDQLVYLSQFREIAGFAAGVFLKVDTGYHRAGVPPAMLNKNGLLEKIAEEEKAGRV 94

Query: 156 QLSLIISHLACAD 168
            L  + SH + + 
Sbjct: 95  ILLGVYSHSSLSY 107


>gi|319404654|emb|CBI78256.1| lysine/ornithine decarboxylase [Bartonella rochalimae ATCC
           BAA-1498]
 gi|319404673|emb|CBI78275.1| lysine/ornithine decarboxylase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 377

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 15/132 (11%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDF 60
           H +E   L +DL  +  N+ +       +R    +K N A      +I   L + G   F
Sbjct: 13  HRSEGPCLVVDLDVVHENYLNFEKALPQSRIFYAIKANPA-----PEILRLLVSLG--SF 65

Query: 61  F----VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
           F    V  +E  +        A           +  I     L   + ++       K+ 
Sbjct: 66  FDAASVAEIEMALA---AGATANRISFGNTIKKERDIARAHALGISLYAIDCFEEVEKVA 122

Query: 117 SCGVSHPYALQV 128
                     +V
Sbjct: 123 RAAPGARVFCRV 134


>gi|315654634|ref|ZP_07907540.1| K+ uptake protein [Mobiluncus curtisii ATCC 51333]
 gi|315491098|gb|EFU80717.1| K+ uptake protein [Mobiluncus curtisii ATCC 51333]
          Length = 247

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 26/204 (12%)

Query: 50  PALYNAGVQDFFVTSVEE----GVKL------RLYTPQARIFV-LYGIHPGQEKIIFDTN 98
                AGV +F     +E      +L            +  ++ +  +   + K+I    
Sbjct: 44  REALAAGVSEFGENKPQELATKAAELGANLGLCADGSASPRWIQIGNLQRNKAKLIVAYG 103

Query: 99  LIPVISSVPQLTFYSKLMS----CGVSHPYALQVDTGFNRL--GLSLQEALDFTHNSFNK 152
               + S+        L       G +    ++V+T       G++ +E L+      ++
Sbjct: 104 AE--LQSLDSAKLAQTLNRLLDQAGRTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQ 161

Query: 153 KLGQLSLIIS---HLACADDPSSHVNSVQLERFRTLISHYKG----IEASLASSSGILLG 205
               L  +++   H+    +        QL   R  +    G     E S+  S    L 
Sbjct: 162 PRLHLIGLMTVAAHVDRVGERGVFEMFSQLAGLREAVLGLPGGADCRELSMGMSGDFELA 221

Query: 206 PNYHFQLTRPGISLYGGTDKINKS 229
                   R G +L+G  D   K 
Sbjct: 222 IAAGSTCVRVGSALFGPRDYAQKP 245


>gi|170736332|ref|YP_001777592.1| alanine racemase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169818520|gb|ACA93102.1| alanine racemase domain protein [Burkholderia cenocepacia MC0-3]
          Length = 376

 Score = 37.7 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT--NLIPV 102
           ++  A   AG Q   V++++E  +      +  ++ +  +    GQ   +     +L  V
Sbjct: 47  QVVDAQIAAGAQGITVSTLKEAEQFFADGIRDIVYAVGMVPAKLGQALALRRQGCDLKIV 106

Query: 103 ISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLI 160
             S+P     +      G      ++VD   +R G+    + L     +       L  +
Sbjct: 107 ADSLPAAHAIAAFGREHGERFDVWIEVDVDGHRSGIPPDADLLIDVGRALTDGGMLLGGV 166

Query: 161 ISHLACADDPSSH 173
           ++H   + +  + 
Sbjct: 167 LAHAGSSYEYDTP 179


>gi|330842542|ref|XP_003293235.1| hypothetical protein DICPUDRAFT_41727 [Dictyostelium purpureum]
 gi|325076459|gb|EGC30243.1| hypothetical protein DICPUDRAFT_41727 [Dictyostelium purpureum]
          Length = 391

 Score = 37.7 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 23/159 (14%)

Query: 62  VTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPV--------ISSVPQLTFY 112
           V+++ E    R ++   + I     I P +    +  +L           I  V  +  +
Sbjct: 71  VSTLSEA---RFFSKDFSNILYATPISPNKVDEAYQIHLDIERLNIMFDNIEHVNSMVEF 127

Query: 113 SKLMSC-GVSHPYALQVDTGFNRLGLSLQ-----EALDFTHNSFNKKLGQLSLIISHLAC 166
           SK            L++D G++R G S +     + +        K       I SH   
Sbjct: 128 SKTNPKYSKRWSVFLKIDCGYHRAGASPELQSTTDLVHLITKGEFKDYFDFQGIYSHSGH 187

Query: 167 ADDPSSHVNSVQLERFRTLI-----SHYKGIEASLASSS 200
           +   ++     +L +    +        K +   + + S
Sbjct: 188 SYKCNTPEEIKELAKEEARVTGDYGKKLKSLGYHVENVS 226


>gi|159114248|ref|XP_001707349.1| Hypothetical protein, enzyme with a TIM-barrel fold [Giardia
           lamblia ATCC 50803]
 gi|157435453|gb|EDO79675.1| hypothetical protein, enzyme with a TIM-barrel fold [Giardia
           lamblia ATCC 50803]
          Length = 230

 Score = 37.7 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 35/222 (15%)

Query: 20  WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD---FFVTSVEE----GVKLR 72
              + A  G+A+  AV K        + +  A+  A       F    V+E       + 
Sbjct: 8   LRDIRAGLGHAKLIAVSKT-------KPV-EAILEAYAAGQRLFGENYVQELVKKAEAV- 58

Query: 73  LYTPQARIFVLYGIHPGQEKI--IFDTNLIP--VISSVPQLTFYSKLMSCG------VSH 122
                + I        G  +     D   IP  V+ +V       +L          +  
Sbjct: 59  -QGVASDI---EWHFIGHLQTNKARDVAFIPNCVVQTVDSDRLARRLSELRPDELGPLRV 114

Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV---QL 179
              + +     + G ++++A++           +L  +++    A D S +         
Sbjct: 115 MIQINISGELTKSGCTVEDAIELAQLISALPRLRLIGLMT--IGAPDASEYSFRALVDAR 172

Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
                 +   + +E S+  SS   L         R G +++G
Sbjct: 173 NVIEQAVKLEEKLELSMGMSSDYQLAVKMGADYVRVGSAIFG 214


>gi|297568540|ref|YP_003689884.1| alanine racemase domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924455|gb|ADH85265.1| alanine racemase domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 250

 Score = 37.7 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 101 PVISSVPQLTFYSKL----MSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKL 154
            ++ ++ +L     L     + G   P  +QV+ G    + G+  ++A +   +      
Sbjct: 114 TMVETIDRLKLARALDRHAAAAGRLLPVLVQVNVGGEAQKAGVMPEQAPELLRSLAELPA 173

Query: 155 GQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNY------ 208
            ++  +++    A  P          R R L   +       A  S +L           
Sbjct: 174 LRVMGLMTMPPMAAHPEES--RPHFARLRQLAEEFARQGLLGAHGSPLLSMGMSADFEVA 231

Query: 209 ---HFQLTRPGISLYGG 222
                 L R G +++G 
Sbjct: 232 VEEGANLVRVGTAIFGP 248


>gi|86750314|ref|YP_486810.1| alanine racemase-like [Rhodopseudomonas palustris HaA2]
 gi|86573342|gb|ABD07899.1| Alanine racemase-like [Rhodopseudomonas palustris HaA2]
          Length = 360

 Score = 37.7 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 81/265 (30%), Gaps = 52/265 (19%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           L ID+  ++ N   +  L   A    V     +K          +A     AG +   +T
Sbjct: 18  LVIDMDRVERNIARVQGLCDAA---GVANRPHIKT----HKSPLLAQMQIKAGAR--GIT 68

Query: 64  S--VEEGVKLRLYTPQARIFV------------LYGIHPGQEKIIFDTNLIPVISSVPQL 109
              + E   +        I +            L  +H  + ++I   +   VI      
Sbjct: 69  CQKLGEAEVMAEAGID-DILISYNLIGEEKMARLGALH-ERAQMIVAADNEVVI-----A 121

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACAD 168
              +     G      ++ DTG  R G+    EA+                ++ +     
Sbjct: 122 GLPAAAARAGRPLGVVVECDTGRQRAGVETPAEAIALARTIAASDGLVFKGLMLYPTEDG 181

Query: 169 DPSSHVNSVQLER-FRTLISHYK--GIEASLASSSGILLGPNYHFQL----TRPGISLYG 221
            P       Q +R F   ++  +  G++A + S+ G     N          RPG  +Y 
Sbjct: 182 WP-------QAQRFFDEALAGIRAHGLDAEIVSTGGSPNLKNLGQLAGATEHRPGTYIYN 234

Query: 222 GTDKINK--SHPMQTVVTAEARIIL 244
              ++    +      +T  + ++ 
Sbjct: 235 DRMQVEAGVASWDDCALTIYSTVVS 259


>gi|312963622|ref|ZP_07778103.1| protein of unknown function UPF0001 [Pseudomonas fluorescens WH6]
 gi|311282131|gb|EFQ60731.1| protein of unknown function UPF0001 [Pseudomonas fluorescens WH6]
          Length = 228

 Score = 37.7 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 38/201 (18%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL-------YGIHPGQEKIIFDTN 98
            +     Y AG++DF    ++E +       QA +  L         I   + + I +  
Sbjct: 40  AQAVREAYAAGMRDFGENYLQEAL-----GKQAELTDLPLSWHFIGPIQSNKTRAIAENF 94

Query: 99  LIPVISSVPQLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
               + SV +L    +L          ++    + V    ++ G +  +     +     
Sbjct: 95  AW--VHSVDRLKIAQRLSEQRPADLPPLNICIQVNVSGEASKSGCTPADLPALANAISAL 152

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH--- 209
              +L  ++     A    +   + Q   F T+     G+   L      L     H   
Sbjct: 153 PRLKLRGLM-----AIPEPTEDRAEQDAAFATVRELQAGLNLPLD----TLSMGMSHDLE 203

Query: 210 ------FQLTRPGISLYGGTD 224
                     R G +L+G  D
Sbjct: 204 SAIAQGATWVRIGTALFGARD 224


>gi|296536745|ref|ZP_06898801.1| diaminopimelate decarboxylase [Roseomonas cervicalis ATCC 49957]
 gi|296262912|gb|EFH09481.1| diaminopimelate decarboxylase [Roseomonas cervicalis ATCC 49957]
          Length = 447

 Score = 37.7 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 21/142 (14%)

Query: 70  KLRL---YTPQARIFVLYGI--HPGQEKIIFDTNLIPV-ISSVPQLTFYSK-LMSCGVSH 122
           +LR        A   V  G+   P + +      +  +   SV ++   +      GV  
Sbjct: 110 ELRATMAAGIPAGATVFSGVGKKPEEIRFALAQGIFQLNAESVEEIDMIAAIAAELGVRA 169

Query: 123 PYALQVDT--------------GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
           P AL+V+                 N+ G++ ++AL            +   I +H+    
Sbjct: 170 PVALRVNPDVDAKTHAKITTGKAENKFGIAYEDALPLYARMAALPAIRPIGIATHIGSQI 229

Query: 169 DPSSHVNSVQLERFRTLISHYK 190
                       R   ++   +
Sbjct: 230 TEGVAPFRAAYARLAEMVRAIR 251


>gi|52549126|gb|AAU82975.1| predicted enzyme with a TIM-barrel fold [uncultured archaeon
           GZfos24D9]
          Length = 224

 Score = 37.7 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 19/187 (10%)

Query: 51  ALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDT-NLIPVISSV 106
           A   AG+       ++E    R +    R+        +   + K   +  +LI  I S 
Sbjct: 38  AAIEAGITIVGENYIQEAE--RAFEVIGRVVKWHFIGHLQRNKVKKAVELFDLIETIDSF 95

Query: 107 P-QLTFYSKLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISH 163
                  S     G   P  +++++G      G+  ++  +           ++  +++ 
Sbjct: 96  SIAEEVNSVSSKIGKIMPILIEINSGREPQKFGVFPEDVAELVVKISALASVKIVGLMTM 155

Query: 164 LACADDPSSH--VNSVQLERFRTLIS------HYKGIEASLASSSGILLGPNYHFQLTRP 215
               +D            E F  +          + +   ++ S  I +       + R 
Sbjct: 156 GPYEEDIEKSRLYFRAAKEIFERIKKSGIPSVDMRYLSMGMSDSYNIAIEEGA--NIVRV 213

Query: 216 GISLYGG 222
           G  ++G 
Sbjct: 214 GTGIFGP 220


>gi|49474718|ref|YP_032760.1| hypothetical protein BQ12320 [Bartonella quintana str. Toulouse]
 gi|49240222|emb|CAF26691.1| hypothetical protein BQ12320 [Bartonella quintana str. Toulouse]
          Length = 229

 Score = 37.7 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 19/144 (13%)

Query: 29  NARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIF 81
             +  AV   V  +        I P L  AG   F    V+E  +    LR       + 
Sbjct: 35  EVQLIAVSKTVSAD-------HIFP-LLQAGQSVFAENRVQEAAEKWPRLRQQFKFIELH 86

Query: 82  VLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFN--RLGL 137
           ++  +   +        ++I  +         S ++       P  +QV+ G    + G+
Sbjct: 87  LIGPLQSNKTAEAVKIFDVIQTVDREKIAKSLSIEMQKQKRILPCYVQVNIGLELQKSGI 146

Query: 138 SLQEALDFTHNSFNKKLGQLSLII 161
             QE + F     N     +  ++
Sbjct: 147 PPQEVIPFVAQCKNHYGLDIIGLM 170


>gi|283779673|ref|YP_003370428.1| alanine racemase domain-containing protein [Pirellula staleyi DSM
           6068]
 gi|283438126|gb|ADB16568.1| alanine racemase domain protein [Pirellula staleyi DSM 6068]
          Length = 385

 Score = 37.7 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 14/122 (11%)

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-------NLIPVISSVPQLTFYSKL 115
            ++ E   L L   +  I + Y I       +           LI        +   S+ 
Sbjct: 81  ATIAEAEMLALAGVR-DILLAYNIVGPNIARVIQLVEQFPGLELIVTADHPQPVAELSRA 139

Query: 116 MSC---GVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPS 171
           +S     V     L +D+G  R GL   E A+            + + I  HL    +  
Sbjct: 140 ISSRTSAVKIGVLLDLDSGMQRTGLPPGEAAIALYTQISQAPGLRAAGI--HLYDGQNHQ 197

Query: 172 SH 173
             
Sbjct: 198 RE 199


>gi|254249069|ref|ZP_04942389.1| Alanine racemase [Burkholderia cenocepacia PC184]
 gi|124875570|gb|EAY65560.1| Alanine racemase [Burkholderia cenocepacia PC184]
          Length = 376

 Score = 37.7 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 53  YNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDT--NLIPVISSVPQ 108
             AG Q   V++++E  +   +  +  ++ +  +    GQ   +     +L  V  S+P 
Sbjct: 53  IAAGAQGITVSTLKEAEQFFAHGIRDIVYAVDMVPAKLGQALALRRQGCDLKIVADSLPA 112

Query: 109 LTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLAC 166
               +      G      ++VD   +R G+    + L     +       L  +++H   
Sbjct: 113 AHAIAAFGREHGERFDVWIEVDVDGHRSGIPPDADLLIDVGRALTDGGMLLGGVLAHAGS 172

Query: 167 ADDPSSH 173
           + +  + 
Sbjct: 173 SYEYDTP 179


>gi|309812008|ref|ZP_07705774.1| alanine racemase, N-terminal domain protein [Dermacoccus sp.
           Ellin185]
 gi|308434066|gb|EFP57932.1| alanine racemase, N-terminal domain protein [Dermacoccus sp.
           Ellin185]
          Length = 200

 Score = 37.7 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFV 62
           RL  DL  L+ N  +M +L  +A    V     VK         +IA    +A      V
Sbjct: 6   RLVADLDVLERNIDAMASLGRDA---GVALRPHVKT----HKMPEIATMQRDAATHGITV 58

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEK------IIFDTNLIPVISSVPQLTFYSKLM 116
            ++ E            + + Y +    E       +     +     S+       K +
Sbjct: 59  ATIGEAEVFVDAGFD-DVSIAYPLWVDDEAGRRLRALAERARIGVGCDSMTAARQLRKPL 117

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              V     +++D+G +R G+  ++A +      +     +  + +    +  P     S
Sbjct: 118 GSAV-VEVLVELDSGQHRTGIPARDAGELAAGIASLGF-DVRGVFTFPGHSYSPEGRAQS 175

Query: 177 VQLER 181
              ER
Sbjct: 176 ADDER 180


>gi|262375723|ref|ZP_06068955.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262309326|gb|EEY90457.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 234

 Score = 37.7 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 65/190 (34%), Gaps = 21/190 (11%)

Query: 52  LYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
           +Y AG + F    ++E ++    L+    +        +   + K + +      +  V 
Sbjct: 51  MYQAGQRAFGENYLQEALEKITALKELEIEWHFI--GHVQRNKTKALAENFAW--VHGVD 106

Query: 108 QLTFYSKLMSC------GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
           +L    +L +        ++    + +D    + G    E  D           +L  ++
Sbjct: 107 RLIIAERLSNQRGDDQPALNICIQVNIDGQDTKDGCQPAEVADLVAQISQLPNVRLRGLM 166

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGI 217
             +   ++P S  ++  L  F  +   +   E     S+  S+ +         + R G 
Sbjct: 167 V-IPAPNNPQSFGDAKVL--FDAVKVQHAHPEDWDTLSMGMSADMTEAIAAGSTMVRVGT 223

Query: 218 SLYGGTDKIN 227
           +L+G   K +
Sbjct: 224 ALFGARPKKD 233


>gi|70730942|ref|YP_260683.1| hypothetical protein PFL_3581 [Pseudomonas fluorescens Pf-5]
 gi|55699944|dbj|BAD69624.1| 2-amino-2-deoxy-D-gluconate hydrolyase (deaminationg), beta-subunit
           [Pseudomonas fluorescens]
 gi|68345241|gb|AAY92847.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 405

 Score = 37.7 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 47/169 (27%), Gaps = 28/169 (16%)

Query: 9   LKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPAL----YNAGVQDFFV 62
           L +   AL++N   M        A  A          G   + PAL     +AG     +
Sbjct: 30  LVLHREALEHNIRWMQKFVSDSGAELAP--------HGKTSMMPALFQRQLDAGAWGITL 81

Query: 63  TSVEEGVKLRLYTPQA--RIFV---LYGIHP----GQEKIIFDTNLIPVISSVPQLTFYS 113
            +    V+ R        R+ +   L G        +     D +   ++     +    
Sbjct: 82  AT---AVQTRAAYAHGARRVLMANQLVGAPNMALIAELLADPDFDFYCMVDHPDSVADLG 138

Query: 114 K-LMSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLI 160
                 GV+    ++      R G   + E L        +    L  I
Sbjct: 139 AFFAQRGVTLKVMIEYGVIGGRCGCRTEQEVLALAKAIQAQPALALCGI 187


>gi|182412322|ref|YP_001817388.1| alanine racemase domain-containing protein [Opitutus terrae PB90-1]
 gi|177839536|gb|ACB73788.1| alanine racemase domain protein [Opitutus terrae PB90-1]
          Length = 235

 Score = 37.7 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 4/79 (5%)

Query: 113 SKLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170
                 G + P  LQV+ G +    G  L++A      +  +   ++  +++        
Sbjct: 114 RAAAELGKTLPVLLQVNAGRDPAKFGAELEDAPQLLEQALGRPHLRVEGLMT--IAPLSS 171

Query: 171 SSHVNSVQLERFRTLISHY 189
              V        RTL    
Sbjct: 172 DPEVARRTFAALRTLRDEL 190


>gi|209883515|ref|YP_002287372.1| pyridoxal phosphate enzyme, YggS family [Oligotropha
           carboxidovorans OM5]
 gi|209871711|gb|ACI91507.1| pyridoxal phosphate enzyme, YggS family [Oligotropha
           carboxidovorans OM5]
          Length = 229

 Score = 37.7 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 23/147 (15%)

Query: 28  GNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARI 80
           G+    AV K    +A       I+P    AG + F    V+E       L+  T   ++
Sbjct: 36  GSVELIAVSKTFDADA-------ISPV-IAAGQRVFGENRVQEAKAKWPPLKEATLDIKL 87

Query: 81  FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA----LQVDTGFNR-- 134
            ++  +   + +      L   I SV + +    L     S         Q++TG     
Sbjct: 88  HLIGPLQSNKAREAV--MLFDAIHSVDRASLCEALSKEIKSRDRHPLLFAQINTGEEPQK 145

Query: 135 LGLSLQEALDFTHNSFNKKLGQLSLII 161
            G++ Q+A  F      +    +S ++
Sbjct: 146 AGVAPQDADAFLAACRERYGLTISGLM 172


>gi|121714483|ref|XP_001274852.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
 gi|119403006|gb|EAW13426.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
          Length = 427

 Score = 37.7 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 18/132 (13%)

Query: 81  FVLYG--IHPGQEKIIFDT----NLIPVISSVPQLTFYSKLMSCGVSHPY--ALQVDTGF 132
             LYG  I+P     +        ++ ++ S  Q+       +     P+   L+VD G 
Sbjct: 127 LCLYGLPIYPSALPRLAQLTPSVRIVLMVDSEQQIAALEAFNASSGHAPWPVFLKVDVGT 186

Query: 133 NRLGL--SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190
            R GL  S                  +     H   +        +  +     L    +
Sbjct: 187 RRAGLERSAPAFAALVRRVEASPAAAVYGFYCHAGHSYGCRGAEAAAGV-----LGEELE 241

Query: 191 GIEASLASSSGI 202
           G+   +A+S+ +
Sbjct: 242 GV---VAASAAL 250


>gi|258646837|ref|ZP_05734306.1| pyridoxal phosphate enzyme, YggS family [Dialister invisus DSM
           15470]
 gi|260404274|gb|EEW97821.1| pyridoxal phosphate enzyme, YggS family [Dialister invisus DSM
           15470]
          Length = 236

 Score = 37.7 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 10/151 (6%)

Query: 92  KIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTG--FNRLGLSLQEALDFTHN 148
           K +   +LI  + SV  +    K     G      L+ +     ++ GL  +   +    
Sbjct: 87  KAVAAADLIQSVDSVEIMEEIDKRAGQAGKVQDVLLEFNISGETSKYGLPPESLDEAAAK 146

Query: 149 SFNKKLGQLSLIISHLACADDPS--SHVNSVQLERFRTLISHYKGIEASLASSSGILLGP 206
           +      ++  ++      +D      V     E +  L +++   + S+  S G+    
Sbjct: 147 AGMLPHIRVKGLMCMAPMVEDVEMTRPVFRRAHEMWEVLKTYFPKGQVSVL-SMGMTRDF 205

Query: 207 NYHFQ----LTRPGISLYGGTDKINKSHPMQ 233
               +    + R G +++G  +  N     +
Sbjct: 206 ETAIEEGATMVRVGTAIFGERNYANGKGETK 236


>gi|229845488|ref|ZP_04465617.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           6P18H1]
 gi|89892365|gb|ABD78959.1| HI0090-like protein [Haemophilus influenzae]
 gi|229811591|gb|EEP47291.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           6P18H1]
          Length = 233

 Score = 37.7 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 85/239 (35%), Gaps = 45/239 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + ++     A           +  AV K        + I+  L  Y AG + F 
Sbjct: 2   NIQHNLNLIHQKIETACEEAKRNQNTVKLLAVSKT-------KPISAILSAYQAGQRTFG 54

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-----PGQEKIIFDT-NLIPVISSVPQLTFYSKL 115
              V+EGV+ ++   +++   L           + +++ +  + +  +         ++ 
Sbjct: 55  ENYVQEGVE-KIQYFESQDINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQ 113

Query: 116 M---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ GL  +E L    +  N     L  ++     A    +
Sbjct: 114 RPTNKAPLNVLIQINISDEESKSGLQPEEMLTLAKHIENLPHLCLRGLM-----AIPAPT 168

Query: 173 HVNSVQLERFRTLISHYKGIEASLAS------SSGILLGPN----YHFQLTRPGISLYG 221
           +  + Q   FR +   ++ ++ +L +      S G+         Y   + R G +++G
Sbjct: 169 NKIAEQEAVFRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKYGSTMVRIGTAIFG 227


>gi|319781640|ref|YP_004141116.1| ornithine decarboxylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167528|gb|ADV11066.1| Ornithine decarboxylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 377

 Score = 37.7 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 24/198 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ +      ++R    VK N A      +I   L   G   F   SV E
Sbjct: 20  LVVDLDVVRDNFRAFEKALPDSRIYYAVKANPA-----PEILRLLAAMG-SSFDTASVAE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPY 124
                     A           +  I     L   +  +  V ++   +++         
Sbjct: 74  VEMAMDAGAPADRISFGNTIKKERDIARAYQLGIRLFAVDCVEEVEKIARVAPGARVFCR 133

Query: 125 ALQVDTG----FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            L    G     +R  G     A+D   ++    L     +  H+              L
Sbjct: 134 VLTDGEGAEWPLSRKFGCVPAMAVDVLRHAKGLGLDA-YGVSFHVGSQQTD--------L 184

Query: 180 ERFRTLISHYKGIEASLA 197
             +   ++  K + A+LA
Sbjct: 185 TAWDRALADAKVVFATLA 202


>gi|281211349|gb|EFA85514.1| hypothetical protein PPL_01471 [Polysphondylium pallidum PN500]
          Length = 277

 Score = 37.7 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 42/148 (28%), Gaps = 15/148 (10%)

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----LIPVISSVPQLTFY---- 112
           V++++E            I     I P + +     +     L  ++     +       
Sbjct: 66  VSTLQEAKFYAQSGYFKDILYAIPIAPNKLEQAASIHSSIDVLHLMVDHPDHVRALVDFR 125

Query: 113 --SKLMSCGVSHPYALQVDTGFNRLGLSL--QEALDFTHNSF--NKKLGQLSLIISHLAC 166
             +     G      +++D G++R G      + LD   +    N +      I +H   
Sbjct: 126 VSNNAALAGKKWSVFVKIDCGYHRAGADPCSPKTLDLIASITKDNNQHFDFQGIYTHSGH 185

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIEA 194
           +    +      +      ++   G   
Sbjct: 186 SYRQQTPKEIAAIALEEATVAGQMGARI 213


>gi|145642000|ref|ZP_01797572.1| hypothetical protein CGSHiR3021_00702 [Haemophilus influenzae
           R3021]
 gi|148825633|ref|YP_001290386.1| hypothetical protein CGSHiEE_02835 [Haemophilus influenzae PittEE]
 gi|145273271|gb|EDK13145.1| hypothetical protein CGSHiR3021_00702 [Haemophilus influenzae
           22.4-21]
 gi|148715793|gb|ABQ98003.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           PittEE]
 gi|309972778|gb|ADO95979.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
          Length = 237

 Score = 37.7 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 80/239 (33%), Gaps = 45/239 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +      A           +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKT-------KPISAILSAYQAGQTAFG 54

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-----PGQEKIIFDT-NLIPVISSVPQLTFYSKL 115
              V+EGV+ ++   +++   L           + +++ +  + +  +         ++ 
Sbjct: 55  ENYVQEGVE-KIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQ 113

Query: 116 M---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ G+  +E L    +  N     L  ++   A       
Sbjct: 114 RPTNKAPLNVLIQINISDEESKSGIQPEEMLILAKHIENLPHLCLRGLM---AIPAPTDK 170

Query: 173 HVNSVQLERFRTLISHYKGIEASLAS------SSGILLGPNY----HFQLTRPGISLYG 221
              + Q   FR +   ++ ++ +L +      S G+             + R G +++G
Sbjct: 171 I--AEQEAVFRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFG 227


>gi|256392720|ref|YP_003114284.1| carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
 gi|256358946|gb|ACU72443.1| Carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
          Length = 591

 Score = 37.7 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 45  CEKIAPALYNAGVQDFFV-TSVE-EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102
             ++A A  +AG+    V    + E + +R        + L G  PG+  ++ D  L   
Sbjct: 13  AVRVARACRDAGLASVAVYAEPDREALHVRAADEA---WALGGSTPGESYLMIDKILTVA 69

Query: 103 ISS 105
             S
Sbjct: 70  TDS 72


>gi|284029827|ref|YP_003379758.1| alanine racemase domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283809120|gb|ADB30959.1| alanine racemase domain protein [Kribbella flavida DSM 17836]
          Length = 384

 Score = 37.7 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 51/181 (28%), Gaps = 44/181 (24%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA------PALY-NAGVQ-DF 60
             +DL A + N   +   +                   ++A       AL   A  +  F
Sbjct: 19  AVVDLAAFRRNADDLVRRAAGTP--------------VRVASKSVRNRALIAEALARPGF 64

Query: 61  -FVTS--VEEGVKLRLYTPQARIFVLYG--IHPGQEKIIFD-----TNLIPVISSVPQLT 110
             V S  + E + L          ++    +H    + +         +  ++  +  L 
Sbjct: 65  HGVMSYALPEALWLARNGVDD--LLMGYPTVHRAALRELAQDAEAAARITLMVDDIEHLA 122

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLG----------LSLQEALDFTHNSFNKKLGQLSLI 160
           F  ++   G      L VD     LG           + ++ +         +  +L  +
Sbjct: 123 FVKQVTGGGERLRICLDVDASLRVLGQHLGVRRSPLRTPEQVVALARQVVADEAFELVGV 182

Query: 161 I 161
           +
Sbjct: 183 M 183


>gi|332715985|ref|YP_004443451.1| ornithine decarboxylase [Agrobacterium sp. H13-3]
 gi|325062670|gb|ADY66360.1| ornithine decarboxylase [Agrobacterium sp. H13-3]
          Length = 377

 Score = 37.7 bits (87), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 63/200 (31%), Gaps = 28/200 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+++      N+     VK N A      +I   L + G       V  +
Sbjct: 20  LVVDLDVVRDNFNAFRHSLPNSAIYYAVKANPA-----PEILKLLASLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +  + L      +           +  +     L   + +V       K+          
Sbjct: 75  Q--MAL-DAGATSDRISFGNTIKKERDVARAYALGIDLFAVDSHEEVEKVARAAPGARVF 131

Query: 126 LQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            +V T         +R  G   Q A+D    +    L +   +  H+            +
Sbjct: 132 CRVLTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGL-ESYGVSFHVGS--------QMM 182

Query: 178 QLERFRTLISHYKGIEASLA 197
            L+ +   +   K + ASL+
Sbjct: 183 NLDAWDAALGDAKRVFASLS 202


>gi|145296605|ref|YP_001139426.1| hypothetical protein cgR_2513 [Corynebacterium glutamicum R]
 gi|140846525|dbj|BAF55524.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 380

 Score = 37.7 bits (87), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 22/163 (13%)

Query: 9   LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           + ID   L  N   M         AL  + +T              +IA    +AG +  
Sbjct: 45  VLIDRERLTANIFKMAAHAAANGIALRPHVKT----------HKIIEIAQMQVDAGARGI 94

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCG 119
              +V E            IF+ Y ++     +     +   IS  V  +          
Sbjct: 95  TCATVGEAEIFAGAGFT-DIFIAYPLYLTDHAVQRLNAIPGAISIGVDSVEMAQATAGLR 153

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                 ++VD+G  R G++   AL+           + + + +
Sbjct: 154 EDIKALIEVDSGHRRSGVT-ATALEL-SEIRQALGSRYTGVFT 194


>gi|313903980|ref|ZP_07837360.1| alanine racemase domain protein [Eubacterium cellulosolvens 6]
 gi|313471129|gb|EFR66451.1| alanine racemase domain protein [Eubacterium cellulosolvens 6]
          Length = 230

 Score = 37.7 bits (87), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQAR----IFVLYGIHPGQEKIIFDTNLIPVISSVP 107
           LY+ GV+DF    ++E   LR             ++  +   + K I +   + +I +V 
Sbjct: 44  LYDHGVRDFGENYIQE---LREKHEHLPSDIRWHMIGHLQRNKVKYIAEY--VTMIHAVD 98

Query: 108 QLTFYS----KLMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
            L        +        P  ++V+     ++ G++ +E  +F           +S ++
Sbjct: 99  TLELAKTIEKEAAKHDRVIPVLIEVNVAGEESKFGVAPEETKEFVKAVSVLPHVHVSGLM 158

Query: 162 S 162
           +
Sbjct: 159 T 159


>gi|258620724|ref|ZP_05715759.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258586922|gb|EEW11636.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 236

 Score = 37.3 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 62/193 (32%), Gaps = 27/193 (13%)

Query: 52  LYNAGVQDFFVTSVEEGV-KLRLYTPQARIFVLYGIH-----PGQEKIIFDTNLIPVISS 105
              AG + F    V+EGV K+R +        L           + +++ +      + +
Sbjct: 46  ATQAGQRCFGENYVQEGVDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDW--VHT 103

Query: 106 VPQLTFYSKLM----SCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSL 159
           + +     +L     +        +QV+T    ++ G+  ++               L  
Sbjct: 104 IEREKIALRLNEQRPADMPPLQVLIQVNTSGEASKSGIEPEQLFTLAELISGLPNLTLRG 163

Query: 160 IISHLACADDPSSHVNSVQLERF-------RTLISHYKGIEA-SLASSSGILLGPNYHFQ 211
           ++S        +      QL  F       + L   Y  I+  S+  S  +         
Sbjct: 164 LMS-----IPENVPDYPAQLAAFTQLAELQQQLAQKYPHIDTLSMGMSGDMQAAIEAGST 218

Query: 212 LTRPGISLYGGTD 224
           + R G +++G  D
Sbjct: 219 IVRIGTAIFGERD 231


>gi|254483006|ref|ZP_05096241.1| Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein
           [marine gamma proteobacterium HTCC2148]
 gi|214036691|gb|EEB77363.1| Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein
           [marine gamma proteobacterium HTCC2148]
          Length = 399

 Score = 37.3 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 88/251 (35%), Gaps = 48/251 (19%)

Query: 36  VKDNAYGLGC--EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP-GQEK 92
           VK N         ++   L   G+Q+F V S++E   +R  +      +L+  +P   E+
Sbjct: 64  VKAN------PEVRVLETLAATGLQNFDVASLDE---VRRVSEYCPGSILHYNNPIKAEE 114

Query: 93  IIFDTNLIPVISS--VPQLTFYSKLMSCGVSHP-------YALQV-----DTGFNRLGLS 138
            + ++ L   + S  + +++   K+  C    P       + L+      D G ++ G +
Sbjct: 115 AVAESYLRYGVRSFALDEMSELEKIHRCTGGDPDVTYTVRFKLEHAGAAYDFG-SKFGAT 173

Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198
              A++       K  G+ +L       +      +    LE    ++S   G++ +  +
Sbjct: 174 EDYAVELLQAI-EKIGGRPALTFH--PGSQCTDPQMYERYLEAASRILSRA-GVKPAFIN 229

Query: 199 SSGILLGPNYHFQLTRPGISLYGG--------TDKINKSHPMQT-------VVTAEARII 243
             G    P Y+   + P +  Y              +     +         V+  AR+I
Sbjct: 230 VGG--GFPEYYQDTSIPALEEYFSVISSSMDKYFDTDIPLICEPGRGMVASSVSLLARVI 287

Query: 244 LIRKALAGELV 254
            +R       V
Sbjct: 288 HVRDCGKSVFV 298


>gi|325110552|ref|YP_004271620.1| hypothetical protein Plabr_4021 [Planctomyces brasiliensis DSM
           5305]
 gi|324970820|gb|ADY61598.1| protein of unknown function UPF0001 [Planctomyces brasiliensis DSM
           5305]
          Length = 239

 Score = 37.3 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 17/143 (11%)

Query: 97  TNLIPVISSVPQLTFYSKLMSCGVSHPYA------LQVDTGFNRLGLSLQEALDFTHNSF 150
            +   ++ SV  L   + +                + V    ++ G S +E         
Sbjct: 99  IDATAMVHSVDSLRLLNHIDRIAGEVGVTPALLLQVNVSGEESKSGFSPEEIRAAAEQLT 158

Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQ----LERFRTLIS----HYKGIEASLASSSGI 202
           +    Q+S +++    A        + Q    L + R  +       K  E S+  ++  
Sbjct: 159 DFNNVQISGLMT---LAPKTDDEQTARQVFSDLRKMREELQTRNNQLKLTELSMGMTNDF 215

Query: 203 LLGPNYHFQLTRPGISLYGGTDK 225
                    + R G  LY G + 
Sbjct: 216 EWAIQEGSTMVRIGSGLYAGCEA 238


>gi|322711171|gb|EFZ02745.1| hypothetical protein MAA_02327 [Metarhizium anisopliae ARSEF 23]
          Length = 474

 Score = 37.3 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 21/153 (13%)

Query: 62  VTSVEEGV----KLRLYTPQAR-IFVLYGIH---------PGQEKIIFDTNLIPVISSVP 107
           V+++ E      +L+ Y  Q R + VLYG+              +++ + ++  ++    
Sbjct: 80  VSTLAEAEFLLPRLKEYKSQGRKVNVLYGLPIPQNALSRLAAVAQVLGEGSVSVLLDDPA 139

Query: 108 QLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQ-----EALDFTHNSFNKKLGQLSLII 161
           Q+   SK  S  GV     +++D G  R G+  Q     E  D    +  +   +LS + 
Sbjct: 140 QIPIVSKFQSLSGVVPHAHIKIDMGGKRAGVEAQSTRFLELADAALEAHGQGKIRLSGLY 199

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEA 194
           SH   +    S   ++++ R   L +  +G + 
Sbjct: 200 SHAGHSYGGDSRAAAIKMMR-AELSAMLEGADR 231


>gi|226939228|ref|YP_002794299.1| hypothetical protein LHK_00295 [Laribacter hongkongensis HLHK9]
 gi|226714152|gb|ACO73290.1| alanine racemase domain-containing protein [Laribacter
           hongkongensis HLHK9]
          Length = 356

 Score = 37.3 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 114/351 (32%), Gaps = 59/351 (16%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYG-----LGCEKIAPALYNAGVQDFFVTSV 65
           +DL  ++ N  +M  L   +    V      G      G   +A AL + G+     + +
Sbjct: 10  VDLPVVRANTRAMVELCHASGIRPV------GITKLACGAHPVAEALIDGGIDIIGDSRI 63

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124
               KL+     AR  +L      +   +     + + S    +   S    + G +H  
Sbjct: 64  GNLEKLQDL--PARKLLLRIPSVSRAVDVVRYADLSLNSEPHTVRALSAAAVALGRTHGV 121

Query: 125 ALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF 182
            +  D G  R G  S  + +            +L  + ++LAC      +  N  QL   
Sbjct: 122 IVMHDLGDLREGCFSADDTVALARLVTELPGLELEGLGTNLACYGGVEPTTENQQQLVDL 181

Query: 183 RTLISHYKGIE---ASLASSSG----ILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQ 233
              I    G++    S ASS+     +  G        R G SL  G    +   P   Q
Sbjct: 182 ARRIERELGVQLRTVSGASSAALPLLLRGGLPAGINQLRLGASLLMGIGLNDDPIPGTRQ 241

Query: 234 TVVTAEARIILIRKALA-----------GELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282
             +     I+ ++   +           G    +       R    A+ AIG  D     
Sbjct: 242 DTMRLAVEIVELKFKPSVPVNSTALDAFGHKPEFEDLGIRQR----AICAIGKQDVNFAD 297

Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGD 332
           L+ LD                   V I+G  + D  + D+TD+    +VGD
Sbjct: 298 LTPLDPA-----------------VRIIGG-SSDHLIVDVTDASQPCQVGD 330


>gi|300703088|ref|YP_003744690.1| hypothetical protein RCFBP_10743 [Ralstonia solanacearum CFBP2957]
 gi|299070751|emb|CBJ42046.1| conserved protein of unknown function, Alanine racemase domain
           protein [Ralstonia solanacearum CFBP2957]
          Length = 376

 Score = 37.3 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 8/131 (6%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLI 100
           E +  A  +AG Q   V++++E  +      +  I    G+ P +            +L 
Sbjct: 46  EPVVRAQLDAGAQGITVSTLKEAEQFFAAGLR-DIVYAVGMAPTRLPQALALRRRGCDLK 104

Query: 101 PVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLS 158
            V  SV      +   +  G +    ++VD   +R G+   +  L        +   +L 
Sbjct: 105 IVADSVACAQAIAAFGNTHGEAFEVWIEVDVDGHRSGIVPDDDRLIAVGRVLAEGGMRLG 164

Query: 159 LIISHLACADD 169
            +++H   + +
Sbjct: 165 GVLAHAGSSYE 175


>gi|295691575|ref|YP_003595268.1| alanine racemase domain-containing protein [Caulobacter segnis ATCC
           21756]
 gi|295433478|gb|ADG12650.1| alanine racemase domain protein [Caulobacter segnis ATCC 21756]
          Length = 217

 Score = 37.3 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 28/161 (17%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEG----------VKLRLYTPQARIFVLYGIHPGQEKIIF 95
           E IAP L +AG + F    V+E           ++LRL  P          +  +E + F
Sbjct: 38  EHIAPVL-DAGQKVFGENRVQEAMERWGQRREGLELRLIGPLQ-------TNKAREAVAF 89

Query: 96  DTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNK 152
             ++I  +         + ++   G +    +QV+TG      G++  EA  F       
Sbjct: 90  -FDVIETVDREKLARVLAEEIQRSGRAPRLYVQVNTGEEPQKAGIAPGEADTFIAACRQT 148

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE 193
               +  ++       DP+ H   +        I+   G+E
Sbjct: 149 YGLAVEGLMCIPPFDTDPAPHFAQL------RAIAERNGVE 183


>gi|86751645|ref|YP_488141.1| ornithine decarboxylase [Rhodopseudomonas palustris HaA2]
 gi|86574673|gb|ABD09230.1| ornithine decarboxylase [Rhodopseudomonas palustris HaA2]
          Length = 380

 Score = 37.3 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 22/170 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ S      ++R    VK N A      ++   L + G   F   SV+E
Sbjct: 23  LVVDLDVVRDNFASFAKALPDSRVFYAVKANPA-----PEVLSLLASLG-SCFDCASVQE 76

Query: 68  ---GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124
               +                    +  I     L   + SV       K+         
Sbjct: 77  IQMALA---AGATPDRISFGNTIKKERDIARAFALGIRLFSVDCSAEVEKIARSAPGSKV 133

Query: 125 ALQV--DTG-----FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
             ++  D        +R  G   + A+D    +    L +   I  H+  
Sbjct: 134 FCRILYDCAGAEWPLSRKFGCDPEMAVDVLDAAKRLGL-EPYGISFHVGS 182


>gi|319407636|emb|CBI81285.1| lysine/ornithine decarboxylase [Bartonella sp. 1-1C]
          Length = 377

 Score = 37.3 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 11/130 (8%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--Q 58
           H +E   L +DL  +  N+ +       +R    +K N A      +I   L + G    
Sbjct: 13  HRSEGPCLVVDLDVVHENYLNFEKALPQSRIFYAIKANPA-----PEILRLLVSLGSSFD 67

Query: 59  DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118
              V  +E  +        A           +  I     L   + +V       K+   
Sbjct: 68  AASVAEIEMALA---AGATANRISFGNTIKKERDIARAHALGISLYAVDCFEEVEKVARA 124

Query: 119 GVSHPYALQV 128
                   +V
Sbjct: 125 APGARVFCRV 134


>gi|13124043|sp|O50657|DCLO_SELRU RecName: Full=Lysine/ornithine decarboxylase; Short=LDC
 gi|2897824|dbj|BAA24923.1| lysine/ornithine decarboxylase [Selenomonas ruminantium]
 gi|28804806|dbj|BAC57940.1| lysine decarboxylase [Selenomonas ruminantium]
          Length = 393

 Score = 37.3 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 57/204 (27%), Gaps = 37/204 (18%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDN---------AYGLGCEKIAPALYNAGVQDFFV 62
            L  ++ N+  M      A     +K N         A GLG               F V
Sbjct: 26  SLDKVEENYQFMRRHLPRAGVFYAMKANPTPEILSLLA-GLG-------------SHFDV 71

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEK----IIFDTNLIPVISSVPQ--LTFYSKLM 116
            S  E   L          +    +P ++        D N+       P         + 
Sbjct: 72  ASAGEMEILHELGVDGSQMI--YANPVKDARGLKAAADYNVRRFTFDDPSEIDKMAKAVP 129

Query: 117 SCGVSHPYALQVDTGF----NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
              V    A++ +        + G  ++EALD    + +  L  +  I  H+      S+
Sbjct: 130 GADVLVRIAVRNNKALVDLNTKFGAPVEEALDLLKAAQDAGLHAM-GICFHVGS-QSLST 187

Query: 173 HVNSVQLERFRTLISHYKGIEASL 196
                 L   R L    + +   L
Sbjct: 188 AAYEEALLVARRLFDEAEEMGMHL 211


>gi|37681058|ref|NP_935667.1| TIM-barrel fold family protein [Vibrio vulnificus YJ016]
 gi|37199808|dbj|BAC95638.1| predicted enzyme with a TIM-barrel fold [Vibrio vulnificus YJ016]
          Length = 236

 Score = 37.3 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 19/194 (9%)

Query: 52  LYNAGVQDFFVTSVEEGVK-LR---LYTPQARI---FVLYGIHPGQEKIIFDTNLIPVIS 104
            Y+AG + F    V+EGV+ +R      P+  I   F+   I   + +++ +      + 
Sbjct: 46  AYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEWHFI-GPIQSNKSRLVAEHFAW--VH 102

Query: 105 SVPQLTFYSKLMSCGV----SHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLS 158
           ++ +     +L              +QV+T    ++ G+S +E               L 
Sbjct: 103 TIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLR 162

Query: 159 LIISHLACADDPSSHVNSVQ--LERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRP 215
            ++S     DD  S + + Q   E  + L+  Y  ++  S+  S  +         + R 
Sbjct: 163 GLMSIPENVDDHVSQLAAFQPLAELQQRLLQRYPSVDTLSMGMSGDMDAAIESGSTMVRI 222

Query: 216 GISLYGGTDKINKS 229
           G +++G  D  NK+
Sbjct: 223 GTAIFGHRDYSNKA 236


>gi|320534300|ref|ZP_08034798.1| tetratricopeptide repeat protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133486|gb|EFW25936.1| tetratricopeptide repeat protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 222

 Score = 37.3 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 31/164 (18%)

Query: 38  DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT 97
            NAY            +AG        + E + L     + RI +L   HP  + +    
Sbjct: 56  ANAY-----------QDAG-------RLNEAITLHQQNLEDRIHILGPDHP--DTLASRN 95

Query: 98  NLIPVISSVPQLTFYSKLMSCGVSHPYAL------QVDTGFNRLGLSLQEA--LDFTHNS 149
           NL        ++     L    +     +       + T  N L ++  +A  LD     
Sbjct: 96  NLAVAYQDAGRIDEAITLQEQNLEDSIHILGPHHPHILTARNNLAVTYHDAGRLDEAITL 155

Query: 150 FNKKLGQLSLIIS-HLACADDPSSHVNSVQLE--RFRTLISHYK 190
           + + L   + I+  H         H+        RF    S +K
Sbjct: 156 YEQTLKDCTRILGPHHPHTLTTRHHLAEAYRAAGRFDDADSLFK 199


>gi|296533551|ref|ZP_06896121.1| orotidine 5'-phosphate decarboxylase [Roseomonas cervicalis ATCC
           49957]
 gi|296266121|gb|EFH12176.1| orotidine 5'-phosphate decarboxylase [Roseomonas cervicalis ATCC
           49957]
          Length = 237

 Score = 37.3 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS 105
            ++A     AG     V S +E  +LR     A + V+ GI P    +     +     +
Sbjct: 145 LRLARLALEAGADGL-VCSPQEVSRLRDAFGDAPLLVVPGIRPAGSAVGDQARIATPEET 203

Query: 106 VPQLTFY 112
           +     +
Sbjct: 204 IAAGADW 210


>gi|254513257|ref|ZP_05125322.1| metal-activated pyridoxal enzyme [Rhodobacteraceae bacterium KLH11]
 gi|221532261|gb|EEE35257.1| metal-activated pyridoxal enzyme [Rhodobacteraceae bacterium KLH11]
          Length = 351

 Score = 37.3 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 75/255 (29%), Gaps = 29/255 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTS- 64
           + +DL   + N              AV   +K         K+A     AG     +T  
Sbjct: 11  VLVDLDIAEANIDRFQGHCAKHEL-AVRPHIKT----HKLPKLARRQLEAGA--IGITCQ 63

Query: 65  -VEEGVK-LRLYTPQARIF---VLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSK-LMS 117
            V E    +        +    +L      + + + +   L  V  +   +   SK    
Sbjct: 64  KVSEAEAMIAEGGIDDVLITFNILGDAKLARLRALSEKVRLSVVADNTETVDGLSKSFSD 123

Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                   ++ DTG  R G+ + ++A D      ++       ++++     +       
Sbjct: 124 AATPLGVLVECDTGAARCGVTTPEQARDLARYIDSQPGVTFLGLMTYPPVGQEV---AVQ 180

Query: 177 VQLERFRTLISHYKGIEASLASSSGI--LLGPNYHFQLTRPGISLYGGTDK----INKSH 230
             L R +  +    G+   + S  G   +         T   I  Y   D+    +    
Sbjct: 181 EWLTRAKREVEEA-GLPVHVVSHGGSPGMWQAQDVPVATEYRIGTYIYNDRSLQALGVCT 239

Query: 231 PMQTVVTAEARIILI 245
                ++  A +I +
Sbjct: 240 WENCALSVLATVISV 254


>gi|154710424|gb|ABS84272.1| TP0866-like protein [Treponema paraluiscuniculi]
          Length = 270

 Score = 37.3 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 42  GLGCEKIAPALYN-AGVQDFFVTSVEEGVKLR 72
           G    KIA  + +  G     V  V+E V LR
Sbjct: 228 GHAVLKIARTIADIEGAARLQVAHVQEAVALR 259


>gi|213971473|ref|ZP_03399585.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
           tomato T1]
 gi|301383500|ref|ZP_07231918.1| hypothetical protein PsyrptM_12746 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062924|ref|ZP_07254465.1| hypothetical protein PsyrptK_23299 [Pseudomonas syringae pv. tomato
           K40]
 gi|302134692|ref|ZP_07260682.1| hypothetical protein PsyrptN_25079 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213923755|gb|EEB57338.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
           tomato T1]
          Length = 228

 Score = 37.3 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 32/168 (19%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           Y AG++DF 
Sbjct: 4   IAANISTLEQRIRDAALAAKRDPASV--------GLLAVSKTKPASDLREAYTAGLRDFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELADLPLCWHFIGPIQSNKTRAIAENFAW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
                 ++    + V    ++ G + Q+              +L  ++
Sbjct: 114 PEGLEPLNICIQVNVSGEASKSGCAPQDLPALAAAINALPRLKLRGLM 161


>gi|114046770|ref|YP_737320.1| hypothetical protein Shewmr7_1264 [Shewanella sp. MR-7]
 gi|113888212|gb|ABI42263.1| Protein of unknown function UPF0001 [Shewanella sp. MR-7]
          Length = 238

 Score = 37.3 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 71/195 (36%), Gaps = 21/195 (10%)

Query: 51  ALYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISS 105
           A Y+AG + F    V+EGV     L+   P      +  +   +  ++    + +  +S 
Sbjct: 45  AAYDAGQRCFGENYVQEGVTKIETLKSTHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSR 104

Query: 106 VPQLTFYSK---LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                  ++        ++    + +     + G+  ++ L   H+       QL  ++ 
Sbjct: 105 EKIAQRLNEQRPAQLAPLNVCIQINISDEDTKSGIDAEQMLPLAHSISQLPHLQLRGLM- 163

Query: 163 HLACADDPSSHVNSVQ-------LERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTR 214
               A   +++  + Q        + F TL  HY  ++  S+  S+ + +       + R
Sbjct: 164 ----AIPSATNDTAQQSRELSELKQLFDTLKQHYPAVDTLSMGMSNDLDVAIECGSTMVR 219

Query: 215 PGISLYGGTDKINKS 229
            G +++G  D   K 
Sbjct: 220 IGSAIFGERDYGAKE 234


>gi|260427318|ref|ZP_05781297.1| alanine racemase [Citreicella sp. SE45]
 gi|260421810|gb|EEX15061.1| alanine racemase [Citreicella sp. SE45]
          Length = 376

 Score = 37.3 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 7/108 (6%)

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFY-SKL 115
           V++++E            ++ + GI P +   +        +L+ ++ SV Q        
Sbjct: 63  VSTLQEAEAFAAAGCTDLVYAV-GIAPAKLPRVAALRATGVDLVVILDSVAQARAVVDAS 121

Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
            + G   P  +++D    R GL+  +              +L  +++H
Sbjct: 122 KAAGTPIPALIEIDCDDARAGLAPGDPALVEIGRILHAGAELRGVLTH 169


>gi|87311059|ref|ZP_01093183.1| hypothetical protein DSM3645_18606 [Blastopirellula marina DSM
           3645]
 gi|87286150|gb|EAQ78060.1| hypothetical protein DSM3645_18606 [Blastopirellula marina DSM
           3645]
          Length = 371

 Score = 37.3 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 95/300 (31%), Gaps = 41/300 (13%)

Query: 11  IDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           IDL  ++ N   +++ +         + +T                A      G     V
Sbjct: 20  IDLPIVEKNLQKLHSYADQHGLHVRPHTKT----------HKSRYFARMQLKQGSSGLTV 69

Query: 63  TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVI-----SSVPQLTFYSKLM 116
             V E     +    + I + Y  I P + + +        +     S+       +   
Sbjct: 70  AKVGEAEV--MALESSDILIAYPAIDPDRRRRLAQLAQQHTVRVAVDSAYGVSALAAAAQ 127

Query: 117 SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHV 174
             G +    + V+ G NR G+S   EAL         +   +L  I  +      P+   
Sbjct: 128 EAGSTIGILVDVNVGMNRTGVSTPVEALQLAQQIAQSENSLRLDGIFFYPGHIWRPADE- 186

Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLG----PNYHFQL------TRPGISLYGGTD 224
            +  L +   +++    +  S   S+ I+ G      Y   L       RPG +++   +
Sbjct: 187 QAEPLRQVDAILAEVITLWESHGLSANIVSGGSTPTAYQSHLLPSQTEIRPGTNIFNDMN 246

Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG--YPLT 282
            +   +   +         ++  A+ G+ V   G K LT D  +     G+     YP  
Sbjct: 247 TVRAGYCELSECAVAIICTVVSTAVPGKCVIDAGTKTLTSDRNVTQPDSGHGHVLEYPRG 306


>gi|91786566|ref|YP_547518.1| D-serine deaminase [Polaromonas sp. JS666]
 gi|91695791|gb|ABE42620.1| D-serine deaminase [Polaromonas sp. JS666]
          Length = 432

 Score = 37.3 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 48/170 (28%), Gaps = 33/170 (19%)

Query: 14  TALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPAL----YNAGVQDFFVTSVEEG 68
            AL++N   M   + +     A         G   ++P L     +AG       +V   
Sbjct: 53  QALQHNLSWMQRFATDRGIDMAP-------HGKTTMSPQLLKRQLDAGAWGLTFATVA-- 103

Query: 69  VKLRLYTPQA--RIFVLYGIHPGQEKIIFD--------TNLIPVISSVPQLTFYSKLMSC 118
            +LR        R  +   +    +               +  ++ S  QL       + 
Sbjct: 104 -QLRAGVLAGARRCMIANQVFTAADLAGIQDMQREYAGLRIAFLVDSAAQLELIEAWHAS 162

Query: 119 GVSH-----PYALQVDTGF--NRLGLSLQ-EALDFTHNSFNKKLGQLSLI 160
                    P+ + ++ G    R G   Q +AL            +L  I
Sbjct: 163 QQDAQTPVRPFEVLLEIGVEGGRTGCRNQHDALTLAQRVHASPACRLVGI 212


>gi|159185965|ref|NP_356693.2| hypothetical protein Atu3948 [Agrobacterium tumefaciens str. C58]
 gi|159141099|gb|AAK89478.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 381

 Score = 37.3 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 11/130 (8%)

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTFYSKLM 116
           V++++E         +  I    GI P +   +        +L  V+ +  Q     +  
Sbjct: 66  VSTLKEAEVFASAGVR-DILYAVGIGPQKLDRVLALRAGGCDLSVVLDTPEQARAVVEAS 124

Query: 117 SCGVS-HPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174
                  P  +++D+  +R GL   + AL       +++   L  +++H   A +    V
Sbjct: 125 RRAKDGIPALIEIDSDGHRAGLKPDDPALIDIGRILHEEGAVLRGVVTH---AGESYGVV 181

Query: 175 NSVQLERFRT 184
            +  L  F  
Sbjct: 182 GAEALAAFAE 191


>gi|319941855|ref|ZP_08016176.1| hypothetical protein HMPREF9464_01395 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804508|gb|EFW01378.1| hypothetical protein HMPREF9464_01395 [Sutterella wadsworthensis
           3_1_45B]
          Length = 238

 Score = 37.3 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 6/136 (4%)

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVS---HPYALQVDTGFNRLGLSLQEALDFTHNS 149
           +    + +  +  +      S      +        + VD   ++ G+S +E        
Sbjct: 98  VAERFDWVQTVDRLRIAERLSAQRPDNLPPLNVLIEVNVDAEASKSGISPEELPALAAAV 157

Query: 150 FNKKLGQLSLIISHLACADDPSSHVN--SVQLERFRTLISHYKGIEA-SLASSSGILLGP 206
                 +L  ++S  A A+     +         F+     Y   +  S+  S+ +    
Sbjct: 158 SELPRLRLRGLMSIPAPAETYEGKMKPLLAMASLFKAFQEKYPQADTLSMGMSADLTEAV 217

Query: 207 NYHFQLTRPGISLYGG 222
                + R G +++G 
Sbjct: 218 EAGSTMVRIGSAIFGP 233


>gi|259909615|ref|YP_002649971.1| hypothetical protein EpC_29900 [Erwinia pyrifoliae Ep1/96]
 gi|224965237|emb|CAX56769.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
          Length = 237

 Score = 37.3 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 82/244 (33%), Gaps = 45/244 (18%)

Query: 16  LKNNWHSMNALSGNAR-----------TAAVVKDNAYGLGCEKIAPALYNAGVQ---DFF 61
           +K+N   +      A              AV K         K A A+  A       F 
Sbjct: 4   IKHNLQQVRQRISAAAAKCGRASQEITLLAVSK--------TKTASAIEEAVAAGQCCFG 55

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDTNLIPVISSVPQLTFYSKLMS- 117
              V+EGV  ++        V + I P Q    +++ +        +V +L   S+L   
Sbjct: 56  ENYVQEGVD-KIQLLANPSLVWHFIGPLQSNKSRLVAEHFDWC--HTVDRLRIASRLSQQ 112

Query: 118 -----CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ G+ L E              +L  +++  A  D+  S
Sbjct: 113 RPDTLAPLNVLIQINISAEPSKSGIMLAELPALALQIAALPRLKLRGLMAIPAPQDNYDS 172

Query: 173 HVNSVQ--LERFRTLISHYKGIEA-SLASS----SGILLGPNYHFQLTRPGISLYGGTDK 225
            +   Q     F  L   Y G++  SL  S    + I  G      + R G +++G  D 
Sbjct: 173 QLAVCQQMATAFEHLQQDYPGVDTLSLGMSDDMDAAIAAGST----MVRIGTAIFGARDD 228

Query: 226 INKS 229
           ++ +
Sbjct: 229 VSAA 232


>gi|270308072|ref|YP_003330130.1| alanine racemase domain protein [Dehalococcoides sp. VS]
 gi|270153964|gb|ACZ61802.1| alanine racemase domain protein [Dehalococcoides sp. VS]
          Length = 220

 Score = 37.3 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 92  KIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
           KI+   +++  + S+        +           +++++G  +   G+  +E ++    
Sbjct: 79  KIVRRFSVVETVDSIEIASELNRRAAEIDKILSVFIEINSGREKQKSGVLPEETVELAKR 138

Query: 149 SFNKKLGQLSLIISHLACADDPSS--HVNSVQLERFRTLIS------HYKGIEASLASSS 200
                  +L+ +++     + P     +  +   +F  + S        + +   ++ S 
Sbjct: 139 ISCLSNLKLTGLMTMGPALEAPEELRTIFRLTKIKFDEIASMGLPNTELQFLSMGMSGSY 198

Query: 201 GILLGPNYHFQLTRPGISLYGGTD 224
            + +       L R G  ++G   
Sbjct: 199 KVAVQEGA--NLVRLGTRIFGPRP 220


>gi|224044517|ref|XP_002191750.1| PREDICTED: similar to chicken D-serine dehydratase, partial
           [Taeniopygia guttata]
          Length = 399

 Score = 37.3 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 11/121 (9%)

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE----KIIFDTNLIPVISSVPQ--LTF 111
           +   V+++ E            I+    + P +      +        V+ + PQ     
Sbjct: 39  RGIAVSTLAEARFFSAGGFNDIIYAFR-LSPRRLTKCSALAQRLQRFQVLLNSPQGLEML 97

Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQE--ALDFTHNSFN--KKLGQLSLIISHLACA 167
               +  G      L++D G  R G+   +  AL           +L  L  + +H    
Sbjct: 98  LQNPLPAGKRWLVWLKLDCGNGRAGIRPTDPAALPLARAIAQGSPELVTLVGVYAHCGNT 157

Query: 168 D 168
            
Sbjct: 158 Y 158


>gi|323489504|ref|ZP_08094731.1| hypothetical protein GPDM_09165 [Planococcus donghaensis MPA1U2]
 gi|323396635|gb|EGA89454.1| hypothetical protein GPDM_09165 [Planococcus donghaensis MPA1U2]
          Length = 223

 Score = 37.3 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 23/221 (10%)

Query: 21  HSMNALSGNARTAAV---VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ 77
             ++A++   +  AV   V       G E+       AG+         EG+  +L    
Sbjct: 13  KQLSAVNDTIQIIAVTKQV-------GIERT-KEAIQAGIHHLGENRP-EGLSKKLEAID 63

Query: 78  ARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSCGVSHP---YALQVDTGFN 133
             +   + I   Q + + D  N I  + S+ +L+   ++             + V    +
Sbjct: 64  ENV-SWHYIGNLQTRKVKDVINEIDYLHSLDRLSLAKEIQKRATRPVNCFVQVNVSGEES 122

Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS------SHVNSVQLERFRTLIS 187
           + G+  ++ ++F  +       ++  +++      D S        + S+QL+      +
Sbjct: 123 KSGIEPEDTINFIESLEAYDNIKVVGLMTMAPNTSDESVIREAFKGLKSLQLQVSEKNWA 182

Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228
           H    E S+  S+  L+         R G +L G   +  +
Sbjct: 183 HAPCTECSMGMSNDYLIAAQEGASFVRIGTALVGAESEAKR 223


>gi|194014407|ref|ZP_03053024.1| putative alanine racemase [Bacillus pumilus ATCC 7061]
 gi|194013433|gb|EDW22998.1| putative alanine racemase [Bacillus pumilus ATCC 7061]
          Length = 369

 Score = 37.3 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 34/125 (27%), Gaps = 14/125 (11%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV---------LYGIHPGQEKIIFDTNL 99
           A      G     V  V E   +  +     IF+         L  I    E I     +
Sbjct: 50  AKVQEEMGASGLTVAKVGEAEVMAAHGLT-DIFIANQIVGETKLKRIRKLAESIHISFGI 108

Query: 100 IPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLS 158
             V   V Q+                ++++ G  R G+  + +           +   L 
Sbjct: 109 DCVEH-VHQIEDV--FRGAEKKAEVLIEIEVGEERSGVIEESDFRQILQAIKTCEFVHLK 165

Query: 159 LIISH 163
            I SH
Sbjct: 166 GIFSH 170


>gi|311108932|ref|YP_003981785.1| alanine racemase [Achromobacter xylosoxidans A8]
 gi|310763621|gb|ADP19070.1| alanine racemase, N-terminal domain protein 2 [Achromobacter
           xylosoxidans A8]
          Length = 280

 Score = 37.3 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 21/127 (16%)

Query: 50  PALYNAGVQDFF------VTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNL 99
              Y AG +         V+   E +     LR         V+  +   + K++     
Sbjct: 71  RLAYEAGCRYLGENKLQEVSRKWEAMADLTDLR-------WSVIGHLQTNKAKLVARYAA 123

Query: 100 I-PVISSVPQLTFY-SKLMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLG 155
               + S+        +L + G      +QV+T    ++ GL  +E   F          
Sbjct: 124 EFQALDSLRVAEALDRRLQAEGRQLDVFVQVNTSGEASKYGLQPEETAAFLRELPAFSGL 183

Query: 156 QLSLIIS 162
           ++  +++
Sbjct: 184 RVRGLMT 190


>gi|320328125|gb|EFW84130.1| alanine racemase domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 378

 Score = 37.3 bits (86), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 33/156 (21%)

Query: 49  APALYNAGVQD--FFVTS----VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102
           A   +  G+ D  + V      +++ +KLR    +  I                      
Sbjct: 70  AEHCFAEGINDVFYAVAIAPGKLDQALKLRRNGCRLSIL------------------TDS 111

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLII 161
           + +   +  + +           +++D   +R GL++ + +L     +  +    L  ++
Sbjct: 112 VVAAQAIVAFGQRHDENFD--VWIEIDCDGHRSGLTIDDPSLVEVARTLIEGGMHLRGVM 169

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           +H   + D  +       E  + L    + +  S A
Sbjct: 170 THAGSSYDLDTP------EALQALAEQERRLCVSAA 199


>gi|300693595|ref|YP_003749568.1| enzyme with a tim-barrel fold protein [Ralstonia solanacearum
           PSI07]
 gi|299075632|emb|CBJ34928.1| Putative predicted enzyme with a tim-barrel fold protein [Ralstonia
           solanacearum PSI07]
          Length = 226

 Score = 37.3 bits (86), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 12/133 (9%)

Query: 52  LYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107
             + G+  F    V+E V    +LR   P   + ++  +   + +      L   I SV 
Sbjct: 47  AIDLGLTVFGENRVQEAVKKWPELRNRNPGIELHLIGPLQSNKVRQAV--GLFDAIESVD 104

Query: 108 ----QLTFYSKLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLII 161
                     +    G      +QV+ G      G+   EA        +     +  ++
Sbjct: 105 RARLAQAIAEEAEKQGRDPAIYIQVNVGKEPQKGGVLPAEAPALIRACRDVYQLNVQGLM 164

Query: 162 SHLACADDPSSHV 174
                  DPS H 
Sbjct: 165 CIPPAGFDPSDHF 177


>gi|320323989|gb|EFW80073.1| alanine racemase domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 378

 Score = 37.3 bits (86), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 33/156 (21%)

Query: 49  APALYNAGVQD--FFVTS----VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102
           A   +  G+ D  + V      +++ +KLR    +  I                      
Sbjct: 70  AEHCFAEGINDVFYAVAIAPGKLDQALKLRRNGCRLSIL------------------TDS 111

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLII 161
           + +   +  + +           +++D   +R GL++ + +L     +  +    L  ++
Sbjct: 112 VVAAQAIVAFGQRHDENFD--VWIEIDCDGHRSGLTIDDPSLVEVARTLIEGGMHLRGVM 169

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           +H   + D  +       E  + L    + +  S A
Sbjct: 170 THAGSSYDLDTP------EALQALAEQERRLCVSAA 199


>gi|226324964|ref|ZP_03800482.1| hypothetical protein COPCOM_02756 [Coprococcus comes ATCC 27758]
 gi|225206312|gb|EEG88666.1| hypothetical protein COPCOM_02756 [Coprococcus comes ATCC 27758]
          Length = 232

 Score = 37.3 bits (86), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 23/131 (17%)

Query: 46  EKIAPALYNAGVQDFF---VTSVEEGVKLRLYTPQARIF-------VLYGIHPGQEKIIF 95
            ++    Y  G + F    V  ++E         +  I        ++  +   + K I 
Sbjct: 38  VEMLEEAYAYGCRYFGENKVQELDE---------KYDIMPKDIHWQMIGHLQRNKVKYII 88

Query: 96  D-TNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDTGFN--RLGLSLQEALDFTHNSFN 151
           D   LI  + S+        +    G+     L+V+      + GL  +E +DF H    
Sbjct: 89  DKAELIHSVDSIRLAETIDKEAAKKGIVVNVLLEVNMAKEDTKFGLMPEEVMDFIHEIVR 148

Query: 152 KKLGQLSLIIS 162
            +  ++  +++
Sbjct: 149 FQHIKVQGLMT 159


>gi|114762422|ref|ZP_01441880.1| threonine aldolase, low-specificity [Pelagibaca bermudensis
           HTCC2601]
 gi|114545040|gb|EAU48044.1| threonine aldolase, low-specificity [Roseovarius sp. HTCC2601]
          Length = 387

 Score = 37.3 bits (86), Expect = 4.3,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 64/223 (28%), Gaps = 45/223 (20%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC-----------EKIAPA-LYNAG 56
           L +DL AL+ N   M   +         K      G              +    +   G
Sbjct: 32  LVLDLDALERNVKKMGDYA---------KA----HGMRHRAHGKMHKSVDVLKLQMELGG 78

Query: 57  VQDFFVTS--VEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDT-----NLIPVISSVPQ 108
                V    V E         +  + V   +  P +   +         +   +  V  
Sbjct: 79  AA--GVCCQKVSEAEVFVRAGIK-DVLVSNQVRDPAKIDRLAQLPKHGSEITVCVDDVAN 135

Query: 109 LTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQE-------ALDFTHNSFNKKLGQLSLI 160
           +   S+     G      +++D G  R G++  E       A++       K +      
Sbjct: 136 VAELSEAAQKHGTELGIFVEIDCGAGRCGVTTTEAVVEIVRAVEAATALSYKGIQAYQGA 195

Query: 161 ISHLACADDPSSHVNSVQLERFRTLIS-HYKGIEASLASSSGI 202
           + H+    D  + +++   +    + +   +GI   L S  G 
Sbjct: 196 MQHMDSYADRKAKIDAAVAQVGDAVTALKAEGIATGLVSGGGT 238


>gi|28872160|ref|NP_794779.1| hypothetical protein PSPTO_5046 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855414|gb|AAO58474.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 228

 Score = 37.3 bits (86), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 32/168 (19%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           Y AG++DF 
Sbjct: 4   IAANISTLEQRIRDAALAAKRDPASV--------GLLAVSKTKPAGDLREAYTAGLRDFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELADLPLCWHFIGPIQSNKTRAIAENFAW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
                 ++    + V    ++ G + Q+              +L  ++
Sbjct: 114 PEGLEPLNICIQVNVSGEASKSGCAPQDLPALAAAINALPRLKLRGLM 161


>gi|283797927|ref|ZP_06347080.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. M62/1]
 gi|291074395|gb|EFE11759.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. M62/1]
          Length = 234

 Score = 36.9 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 9/124 (7%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYT---PQARIFVLYGIHPGQEKIIFDTN-LIP 101
            ++    Y AG +DF    V+E ++   +       R  ++  +   + + + D   LI 
Sbjct: 38  VEMLQEAYEAGSRDFGENHVQEILE--KHGQMPEDVRWHMIGHLQKNKVRQVIDKVVLIH 95

Query: 102 VISSV---PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
            + +V    Q+   +      +     + V    ++ G   +E  +            + 
Sbjct: 96  SVDTVGLAEQIEKEAAKKDLDIDILLEVNVAGEESKFGFCPEEVEEAVRKISLLPHVHIK 155

Query: 159 LIIS 162
            +++
Sbjct: 156 GLMT 159


>gi|32470748|ref|NP_863741.1| preprotein translocase subunit SecA [Rhodopirellula baltica SH 1]
 gi|32442893|emb|CAD71412.1| preprotein translocase SecA subunit [Rhodopirellula baltica SH 1]
          Length = 683

 Score = 36.9 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 58  QDFFVTSVEEGVKLRLYTPQARI--FVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSK 114
           +   V  V+E   +        +   +L G  PG+              +S+     +  
Sbjct: 259 RGLAVALVDE---IDHVLIDDALSPLLLSGTLPGEADDAAVHRHALKTATSLHGEEDF-- 313

Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL 164
            ++ G         DTG NR   ++++  D +      +  +L+L  +HL
Sbjct: 314 -LATGQQIELT---DTGLNRAYEAVEDWSDASLRRPWHEYVELALQATHL 359


>gi|1730919|sp|P52055|YPI1_VIBAL RecName: Full=UPF0001 protein in pilT-proC intergenic region;
           AltName: Full=ORF1
 gi|801880|dbj|BAA09062.1| FkuA [Vibrio alginolyticus]
          Length = 233

 Score = 36.9 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 19/189 (10%)

Query: 52  LYNAGVQDFFVTSVEEGV----KLRLYTPQARI---FVLYGIHPGQEKIIFDTNLIPVIS 104
            Y AG   F    V+EGV        + P  RI   F+   I   + +++ +      + 
Sbjct: 46  AYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFI-GPIQSNKSRLVAEHFDW--VH 102

Query: 105 SVPQLTFYSKLMSCG----VSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLS 158
           ++ +     +L              +QV+T    ++ G++  E  +            L 
Sbjct: 103 TIDRTKIAQRLNDQRPSELKPLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLR 162

Query: 159 LIISHLACADDPSSHVNSVQ-LERFRTLI-SHYKGIEA-SLASSSGILLGPNYHFQLTRP 215
            ++S  A   D  S ++  Q L   +  + + +  I+  S+  S  +         + R 
Sbjct: 163 GLMSIPANVSDYESQLHEFQKLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRI 222

Query: 216 GISLYGGTD 224
           G +++G  D
Sbjct: 223 GTAIFGARD 231


>gi|323528944|ref|YP_004231096.1| alanine racemase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323385946|gb|ADX58036.1| alanine racemase domain protein [Burkholderia sp. CCGE1001]
          Length = 376

 Score = 36.9 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 8/135 (5%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLI 100
           E++  A  +AG     V++++E  +      +  I    G+ P +            +L 
Sbjct: 46  EQVVRAQMDAGASGITVSTLKEAEQFFAGGVR-DIVYAVGMAPTKLPQALALRRQGCDLK 104

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS- 158
            V  SV                    +++D   +R G++ ++ +  T        G  + 
Sbjct: 105 IVADSVACAEAIVAFGREHDERFEVWIEIDVDGHRSGIAPEDDMLLTVGKILSDGGMPAG 164

Query: 159 LIISHLACADDPSSH 173
            +++H   + D  +H
Sbjct: 165 GVLAHAGSSYDYDTH 179


>gi|295675574|ref|YP_003604098.1| alanine racemase domain protein [Burkholderia sp. CCGE1002]
 gi|295435417|gb|ADG14587.1| alanine racemase domain protein [Burkholderia sp. CCGE1002]
          Length = 240

 Score = 36.9 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 74/246 (30%), Gaps = 53/246 (21%)

Query: 14  TALKNNWHSMNALSGNAR-----------TAAVVK---DNAYGLGCEKIAPALYNAGVQD 59
               +N   ++     A              AV K    +A            + AG + 
Sbjct: 10  DHFAHNLADVHERIAKAAQAAGRDAQSVMLLAVSKTFPADA--------VRDAHAAGQRA 61

Query: 60  FFVTSVEEGVK-------LRLYTPQARIFVLYGIH-----PGQEKIIFDTNLIPVISSVP 107
           F    V+E +        LR          L           + + + +      + SV 
Sbjct: 62  FGENYVQEALDKIQTLADLRAS--------LEWHFIGPLQSNKTRPVAEHFDW--VHSVD 111

Query: 108 QLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
           +L    +L          ++    + V    ++ G++  EA    H        +L  ++
Sbjct: 112 RLKIAQRLSEQRPDNLPPLNVCLQVNVSGEASKSGVAPDEAAAIAHQITALPKLKLRGLM 171

Query: 162 SHLACADDPSS-HVNSVQL-ERFRTLISHYKGIEA-SLASSSGILLGPNYHFQLTRPGIS 218
           S    A D  +      QL E F  L +    ++  S+  S+ +         + R G +
Sbjct: 172 SIPEPAGDLDAQRAPHRQLRELFERLRNDGLALDTLSMGMSADLEAAVLEGATIVRVGTA 231

Query: 219 LYGGTD 224
           ++G  D
Sbjct: 232 IFGARD 237


>gi|51891691|ref|YP_074382.1| putative alanine racemase [Symbiobacterium thermophilum IAM 14863]
 gi|51855380|dbj|BAD39538.1| putative alanine racemase [Symbiobacterium thermophilum IAM 14863]
          Length = 383

 Score = 36.9 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 75/273 (27%), Gaps = 62/273 (22%)

Query: 12  DLTALKNNWHSM---------------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           DL A++NN  ++                 L+ N +  A V                  AG
Sbjct: 34  DLDAIRNNARTLAEAARREGIQLYFMSKQLNRNPQVIAAV----------------AEAG 77

Query: 57  VQDFFVTS-VEEGVKLRLYTPQARIFVLYGI------HPGQEKIIFDTN-LIPVISSVPQ 108
           +    V   +++    R          L  +             +      +  +  + Q
Sbjct: 78  IPR-GVAVDIDDARAFREAGV-----ALGHVGHLVQIPRAFLPQVLSWRPEVMTVFGLAQ 131

Query: 109 LTFYS-KLMSCGVSHPYALQVDTGF----NRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
               S   +  G+     L+V +G        G+ L E              +++ + + 
Sbjct: 132 ARAVSDAAVGLGLRQDVLLRVASGCLYPGQEGGIPLGELPAVALAISRLPGVRVAGV-TA 190

Query: 164 LAC-ADDPSSHVNSVQLE---RFRTLISHYKGIE------ASLASSSGILLGPNYHFQLT 213
             C   +    V +  LE   R   L+    G+E       SL  ++ + L         
Sbjct: 191 FPCLVAEDGRPVATPNLEAVTRAAALLRDELGMEIAQVNAPSLTCAATLALLRQAGATHG 250

Query: 214 RPGISLYGGTD-KINKSHPMQTVVTAEARIILI 245
            PG ++ G T        P    +     +   
Sbjct: 251 EPGHAITGTTPLHAVSDQPELPAMVYLTEVSHT 283


>gi|110635638|ref|YP_675846.1| alanine racemase-like [Mesorhizobium sp. BNC1]
 gi|110286622|gb|ABG64681.1| alanine racemase-like protein [Chelativorans sp. BNC1]
          Length = 388

 Score = 36.9 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 37/219 (16%)

Query: 9   LKIDLTALKNNWHSMN--ALSGNARTAAVVKDNAYGLG----CEKIAPA-LYNAGVQDFF 61
           L +DL AL+ N   M   A +   R  A         G       +    +   G     
Sbjct: 33  LILDLDALERNIKKMGDYARAHGMRHRA--------HGKMHKSVDVLKLQMELGGA--IG 82

Query: 62  VTS--VEEGVKLRLYTPQARIFVLYGIHPG------QEKIIFDTNLIPVISSVPQLTFYS 113
           V    V E         +  I V   +          +   +   +I  +     +   S
Sbjct: 83  VCCQKVSEAEVFARAGFK-DILVSNQVRDAAKIDRLAKLPAYGARVIVCVDDPANVADLS 141

Query: 114 KLMSC-GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLI------ISHLA 165
                 G      +++D G  R G+    E ++           + + I      + H+ 
Sbjct: 142 AAAQKHGTVIECFVEIDCGAGRCGVKTSPEVVEIATAVDAAPGLKFTGIQAYQGAMQHID 201

Query: 166 CADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGI 202
             ++  + +++  + + +  +   K  G+E  L S  G 
Sbjct: 202 GYEERKAKLDAA-IAQVKKAVEALKAVGLEPELVSGGGT 239


>gi|315657455|ref|ZP_07910337.1| cell division protein YlmE [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315491927|gb|EFU81536.1| cell division protein YlmE [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 248

 Score = 36.9 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 9/124 (7%)

Query: 115 LMSCGVSHPYALQVDTGFNRL--GLSLQEALDFTHNSFNKKLGQLSLIIS---HLACADD 169
           L   G +    ++V+T       G++ +E L+      ++    L  +++   H+    +
Sbjct: 123 LDQAGRTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQPRLHLIGLMTVAAHIDRVGE 182

Query: 170 PSSHVNSVQLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225
                   QL   R  +    G     E S+  S    L         R G +L+G  D 
Sbjct: 183 CGVFEMFSQLAGLREAVLGLPGGADCRELSMGMSGDFELAIAAGSTCVRVGSALFGPRDY 242

Query: 226 INKS 229
             K 
Sbjct: 243 AQKP 246


>gi|283479693|emb|CAY75609.1| UPF0001 protein yggS [Erwinia pyrifoliae DSM 12163]
          Length = 266

 Score = 36.9 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 82/244 (33%), Gaps = 45/244 (18%)

Query: 16  LKNNWHSMNALSGNAR-----------TAAVVKDNAYGLGCEKIAPALYNAGVQ---DFF 61
           +K+N   +      A              AV K         K A A+  A       F 
Sbjct: 33  IKHNLQQVRQRISAAAAKCGRASQEITLLAVSK--------TKTASAIEEAVAAGQCCFG 84

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDTNLIPVISSVPQLTFYSKLMS- 117
              V+EGV  ++        V + I P Q    +++ +        +V +L   S+L   
Sbjct: 85  ENYVQEGVD-KIQLLANPSLVWHFIGPLQSNKSRLVAEHFDWC--HTVDRLRIASRLSQQ 141

Query: 118 -----CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ G+ L E              +L  +++  A  D+  S
Sbjct: 142 RPDTLAPLNVLIQINISAEPSKSGIMLAELPALALQIAALPRLKLRGLMAIPAPQDNYDS 201

Query: 173 HVNSVQ--LERFRTLISHYKGIEA-SLASS----SGILLGPNYHFQLTRPGISLYGGTDK 225
            +   Q     F  L   Y G++  SL  S    + I  G      + R G +++G  D 
Sbjct: 202 QLAVCQQMATAFEHLQQDYPGVDTLSLGMSDDMDAAIAAGST----MVRIGTAIFGARDD 257

Query: 226 INKS 229
           ++ +
Sbjct: 258 VSAA 261


>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 783

 Score = 36.9 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 8/105 (7%)

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
            D  V  ++E  +L      A I         +   +       ++ S       ++L+ 
Sbjct: 292 DDLAVLILDEADRLLELGFSAEI--------HELVRLCPKRRQTMLFSATMTEEINELIK 343

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
             ++ P  L  D    R     +E +         +   L  + S
Sbjct: 344 LSLTKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLALCS 388


>gi|71735273|ref|YP_275478.1| alanine racemase domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71555826|gb|AAZ35037.1| Alanine racemase, N-terminal domain family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 377

 Score = 36.9 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 33/156 (21%)

Query: 49  APALYNAGVQD--FFVTS----VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102
           A   +  G+ D  + V      +++ +KLR    +  I                      
Sbjct: 70  AEHCFAEGINDVFYAVAIAPGKLDQALKLRRNGCRLSIL------------------TDS 111

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLII 161
           + +   +  + +           +++D   +R GL++ + +L     +  +    L  ++
Sbjct: 112 VVAAQAIVAFGQRHDENFD--VWIEIDCDGHRSGLTIDDPSLVEVARTLIEGGMHLRGVM 169

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           +H   + D  +       E  + L    + +  S A
Sbjct: 170 THAGSSYDLDTP------EALQALAEQERRLCVSAA 199


>gi|49474545|ref|YP_032587.1| ornithine decarboxylase [Bartonella quintana str. Toulouse]
 gi|49240049|emb|CAF26473.1| Ornithine decarboxylase [Bartonella quintana str. Toulouse]
          Length = 377

 Score = 36.9 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 28/199 (14%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  ++ N+ +       +R    +K N A      +I   L + G       V  +
Sbjct: 20  LIVDLDVVRENYLNFEKALPQSRIFYAIKANPA-----PEILNLLASLGSSFDAASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  + L                  +  I+    L   + +V  +    K+          
Sbjct: 75  E--MAL-KAGATPDRISFGNTIKKERDIVQAYALGISLYAVDCVEEVEKIARAAPGVRVF 131

Query: 126 LQVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
            +V T         +R  G    +A+D   ++    L Q   +  H+             
Sbjct: 132 CRVLTDGKGAEWPLSRKFGCVPAKAVDVLRHAHQLGL-QAHGVSFHVGSQQTD------- 183

Query: 178 QLERFRTLISHYKGIEASL 196
            L  +   +S    +   L
Sbjct: 184 -LRAWDRALSDAATVFRHL 201


>gi|220926699|ref|YP_002502001.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium nodulans ORS 2060]
 gi|219951306|gb|ACL61698.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium nodulans ORS 2060]
          Length = 403

 Score = 36.9 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 25/171 (14%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           DL+AL     ++ A L         VK N       ++  AL    V  F V S  E V+
Sbjct: 27  DLSALGEQARALRAPLPPGTDFFYAVKAN----NDPQVLRALAPH-VAGFEVASAGEIVR 81

Query: 71  LRLY-TPQARIFVLYGI--HPGQEKIIFDTNLIPV-ISSVPQLTF--------------Y 112
           +R      ARI V+ G     G  + +    +  + + S   +                 
Sbjct: 82  VRQAVGSAARI-VMGGPARTEGDIRTLLAFGVERLHVESAQAMRLANAVAARAGATIPVL 140

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
            ++   G      L +     + G+      D      + +  +      H
Sbjct: 141 LRVNLAGPVPGATLTMGGAATQFGIEQSAIPDALTILRDCRALRFEGFHFH 191


>gi|23012520|ref|ZP_00052584.1| COG0019: Diaminopimelate decarboxylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 274

 Score = 36.9 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 65/232 (28%), Gaps = 37/232 (15%)

Query: 12  DLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE--- 67
           DL  ++ N+ +      + R    VK N A      ++   L   G   F   SV E   
Sbjct: 26  DLDVVRENYTAFARALPDTRVFYAVKANPA-----AEVLRLLAEMG-SCFDTASVAEIEM 79

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPY 124
            +        A           +  I+    L   +  +    ++   S+          
Sbjct: 80  AL---SAGATADRVSFGNTIKKERDIVRALKLGIRLFAVDCQAEVEKISRASEAAGIEAG 136

Query: 125 ALQV-----------DTGFNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADD 169
            +QV           D   +R  G   +     L+  H       G    + S  A  + 
Sbjct: 137 DVQVFCRILCDGAGADWPLSRKFGCEPEMAVNVLEHAHRHGLHAYGVSFHVGSQQANTEA 196

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
               + S     F+      +GI  S+ +  G             PG+  YG
Sbjct: 197 WDGALASA-AAIFQDC--ALRGIGLSMVNLGGGFPTKYLKQ---VPGVETYG 242


>gi|296827408|ref|XP_002851163.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238838717|gb|EEQ28379.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 458

 Score = 36.9 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 99  LIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLG 155
           +  ++ S+  + + S+  + CG      +++DTG+ R G++    +        +  +  
Sbjct: 111 VTCLVDSIEIIPYLSRYHALCGKRLGVFVKMDTGYGRAGVAYNSPQFDAIVSELYTVEGK 170

Query: 156 Q-----LSLIISHLACADDPSSHVNSV 177
           +     L    SH+  +       +++
Sbjct: 171 EPHLFTLRGFYSHMGHSYSSDHPSDAM 197


>gi|257389186|ref|YP_003178959.1| FolC bifunctional protein [Halomicrobium mukohataei DSM 12286]
 gi|257171493|gb|ACV49252.1| FolC bifunctional protein [Halomicrobium mukohataei DSM 12286]
          Length = 817

 Score = 36.9 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 7/122 (5%)

Query: 46  EKIAPALYNAGVQDF-FVTSVE--EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIP 101
             +A A  +AG      V+ +E  E ++L        + V++ I  P       D + + 
Sbjct: 636 APVARAALDAGADILNDVSGLEDPE-MRLVAADYDVPVVVMHSIEVPVDPDSAVDYDDV- 693

Query: 102 VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
           V   + QLT    L          + VD G    G S  E+ +        +     +++
Sbjct: 694 VEDCIDQLTERVLLAEKAGLDREQIVVDPGLG-FGKSAAESFELLGRLEEFQSLGCPILV 752

Query: 162 SH 163
            H
Sbjct: 753 GH 754


>gi|323467193|gb|ADX70880.1| AAE family aspartate:alanine exchanger [Lactobacillus helveticus
           H10]
          Length = 552

 Score = 36.9 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           ITD   + VGD++ I GP    + +  A  T  Y+ +  I
Sbjct: 337 ITDYTRLTVGDHVTIIGP---ANYLTNAIKTIGYEKVTGI 373


>gi|260881737|ref|ZP_05405125.2| pyridoxal phosphate enzyme, YggS family [Mitsuokella multacida DSM
           20544]
 gi|260848290|gb|EEX68297.1| pyridoxal phosphate enzyme, YggS family [Mitsuokella multacida DSM
           20544]
          Length = 230

 Score = 36.9 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 45/239 (18%)

Query: 16  LKNNWHSMNALSGNA-------------RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62
           +  N H +      A             +  AV K         +      +AG  D   
Sbjct: 2   IAENLHQVEQHIKEAMARRTRVPKDAPVKLVAVTK----NHD-VEAMREAIDAGATDIGE 56

Query: 63  TSVEEGVK----L-RLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLM 116
             ++E       L R  T      ++  +   + K      +LI  + S        K  
Sbjct: 57  NRIQEAKSKFDILDRDVTWH----LIGHLQTNKAKQAVKYFSLIHSVDSEHLARALDKEA 112

Query: 117 -SCGVSHPYALQVDTGF--NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-- 171
              G      +QV+     ++ G+  ++              +L  ++       D    
Sbjct: 113 GKIGKCQDVLVQVNLAKEDSKSGIYKEDLRPLLDLVDALPNLRLRGLMCIAPNYADVEAC 172

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF--------QLTRPGISLYGG 222
             +     E F+ +    K I    A+ S + +G  + +         + R G +++G 
Sbjct: 173 RPLFHEMYEIFQQV----KEIPFKTANISYLSMGMTHDYQIAVEEGANIVRVGTAIFGP 227


>gi|197334451|ref|YP_002155186.1| pyridoxal phosphate enzyme, YggS family [Vibrio fischeri MJ11]
 gi|197315941|gb|ACH65388.1| pyridoxal phosphate enzyme, YggS family [Vibrio fischeri MJ11]
          Length = 236

 Score = 36.9 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 103 ISSVPQLTFYSKLMSCGVS----HPYALQVDTGF--NRLGLSLQEALDFTHNSFNKKLGQ 156
           + SV +L    +L     S        +QV+T    ++ G + +E ++            
Sbjct: 101 VHSVERLKIAQRLNEQRPSELGELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLT 160

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLI-------SHYKGIEA-SLASSSGILLGPNY 208
           L  ++S  A   +      + QL  F+ L        + Y  ++  S+  S  +      
Sbjct: 161 LRGLMSIPANVSN-----YAEQLAAFKQLTSIQNQLRAQYPQVDTLSMGMSGDMDAAIEA 215

Query: 209 HFQLTRPGISLYGGTDKINKS 229
              + R G +++G  D  NK 
Sbjct: 216 GSTMVRIGTAIFGARDYKNKE 236


>gi|163761098|ref|ZP_02168175.1| ornithine decarboxylase [Hoeflea phototrophica DFL-43]
 gi|162281649|gb|EDQ31943.1| ornithine decarboxylase [Hoeflea phototrophica DFL-43]
          Length = 417

 Score = 36.9 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 24/172 (13%)

Query: 36  VKDNAYGLGCEK-IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKI 93
           VK N      E  +   L  AGV+ F V S  E   +R  +P A +  ++ +      ++
Sbjct: 58  VKTNG-----EPMVLKTLVEAGVKIFDVASPGEFEAVRAASPDAEMLYMHPVKAQSDIRL 112

Query: 94  IFDTNLIPVISSVPQLTFYS------KLMSCGVSHPYALQVDT---GF----NRLGLSLQ 140
             +T  I V+S   +            L     S    +++ T          + G +  
Sbjct: 113 ALETYGIRVMSLDHEDEIAKVLRIVRALDLDPASITIFVRLQTKGHAMYELSKKFGAAPG 172

Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI 192
            A++        ++G    +  H+    +        Q  +    + +  G+
Sbjct: 173 HAVELVQRL--DRIGFKVGLCFHVGSQVEEPDSY--EQALKSADWVRNRAGV 220


>gi|145637682|ref|ZP_01793336.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           PittHH]
 gi|145269142|gb|EDK09091.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
           PittHH]
          Length = 237

 Score = 36.9 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 80/239 (33%), Gaps = 45/239 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +      A           +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKT-------KPISAILSAYQAGQTAFG 54

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-----PGQEKIIFDT-NLIPVISSVPQLTFYSKL 115
              V+EGV+ ++   +++   L           + +++ +  + +  +         ++ 
Sbjct: 55  ENYVQEGVE-KIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQ 113

Query: 116 M---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ G+  +E L    +  N     L  ++   A       
Sbjct: 114 RPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLM---AIPAPTDK 170

Query: 173 HVNSVQLERFRTLISHYKGIEASLAS------SSGILLGPNY----HFQLTRPGISLYG 221
              + Q   FR +   ++ ++ +L +      S G+             + R G +++G
Sbjct: 171 I--AEQETVFRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFG 227


>gi|159185643|ref|NP_357406.2| ornithine decarboxylase [Agrobacterium tumefaciens str. C58]
 gi|159140777|gb|AAK90191.2| ornithine decarboxylase [Agrobacterium tumefaciens str. C58]
          Length = 377

 Score = 36.9 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 11/123 (8%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+++      N+     VK N A      +I   L + G       V  +
Sbjct: 20  LVVDLDVVRDNFNAFRHSLPNSAIYYAVKANPA-----PEILKLLASLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           +  + L      +           +  +     L   + +V       K+          
Sbjct: 75  Q--MAL-DAGATSDRISFGNTIKKERDVARAHALGIDLFAVDSHEEVEKVARAAPGARVF 131

Query: 126 LQV 128
            +V
Sbjct: 132 CRV 134


>gi|238059466|ref|ZP_04604175.1| diaminopimelate decarboxylase [Micromonospora sp. ATCC 39149]
 gi|237881277|gb|EEP70105.1| diaminopimelate decarboxylase [Micromonospora sp. ATCC 39149]
          Length = 429

 Score = 36.9 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 41/153 (26%), Gaps = 27/153 (17%)

Query: 30  ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89
           A+    VK N+Y      +  A     V  F V S  E    R   P     +L    P 
Sbjct: 62  AKVCYAVKANSY----RPVV-AALAGHVDGFEVASAAEATLARSVRPDG---LLVAAGPA 113

Query: 90  QEKIIFDTNL--------IPVISSVPQLTFYSKLMSCGV-------SHPYALQVDTGFN- 133
           +   +    +        +  +  + ++   +  +   V           A+        
Sbjct: 114 KSDTLLRHLIAHGVDMINVESLHELRRVDRIAAELDQPVAVTLRVNPRRVAVAGALAMGG 173

Query: 134 ---RLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
              + G+   +  +    +   +   +     H
Sbjct: 174 KATQFGIPEADVPEVLEQARALRRTDVVGFHLH 206


>gi|260466803|ref|ZP_05812988.1| alanine racemase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259029415|gb|EEW30706.1| alanine racemase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 220

 Score = 36.9 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 16/146 (10%)

Query: 45  CEKIAPALY--------NAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEK 92
              ++             AG + F    V+E       L+   P   + ++  +   + +
Sbjct: 31  LVAVSKTFEAADIGPVIEAGQRVFGENRVQEAQGKWPPLKGAFPDIELHLIGPLQSNKAR 90

Query: 93  IIFDT-NLIPVISSVP-QLTFYSKLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHN 148
                 ++I  +           ++   G +    +QV+TG      G+  +EA+ F   
Sbjct: 91  EAVALFDVIETVDREKIAAELAREIARQGRAPKLYVQVNTGSEPQKAGIEPREAVAFVAR 150

Query: 149 SFNKKLGQLSLIISHLACADDPSSHV 174
             +     +  ++      ++P  H 
Sbjct: 151 CRDVHGLAIEGLMCIPPADENPGPHF 176


>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
 gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score = 36.9 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 8/105 (7%)

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
            D  V  ++E  +L      A I         +   +       ++ S         L+ 
Sbjct: 281 DDLAVLILDEADRLLELGFNAEI--------HELVRLCPKRRQTMLFSATMTEEVDMLIK 332

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
             ++ P  L  D    R     +E L         +   L  + S
Sbjct: 333 LSLTKPLRLSADPSAKRPAALTEEVLRLRRMREVNQEAVLLALCS 377


>gi|302524721|ref|ZP_07277063.1| orn/DAP/Arg decarboxylase 2 [Streptomyces sp. AA4]
 gi|302433616|gb|EFL05432.1| orn/DAP/Arg decarboxylase 2 [Streptomyces sp. AA4]
          Length = 502

 Score = 36.9 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 18/170 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  ++ +   + A+   AR    VK N A      ++   +  AG   F V   EE
Sbjct: 22  LVVDLDVVRGSCARLRAVLPEARMYYAVKANPA-----PEVVRVVRQAGA-GFDVAGREE 75

Query: 68  GVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPY 124
            ++L L    +               I F   +     +        KL   + G +   
Sbjct: 76  -IELCLAQGVRPESLSYGNPVKKARDIEFAHRVGVRRFTFDSREDLEKLAEFAPGATVSC 134

Query: 125 ALQVD-----TGFNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD 168
            + VD     T F R  G     A +    +    L     I  H+    
Sbjct: 135 RILVDSPGALTPFGRKFGCDPAMAAELLVRAAELGL-DPEGIAFHVGSQH 183


>gi|254431565|ref|ZP_05045268.1| conserved hypothetical protein TIGR00044 [Cyanobium sp. PCC 7001]
 gi|197626018|gb|EDY38577.1| conserved hypothetical protein TIGR00044 [Cyanobium sp. PCC 7001]
          Length = 220

 Score = 36.9 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 62/234 (26%), Gaps = 43/234 (18%)

Query: 20  WHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNA-----GVQDFFVTSVEEGV---- 69
             ++   L  + R  AV K    G       PA         G + F  + ++E +    
Sbjct: 1   MEAIRAQLPPSCRLLAVSK----GH------PAAAIRAAVAAGQRSFGESRLQEAMAKQD 50

Query: 70  KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP---VISSVPQLTFYSKLMSCGVSHP--- 123
            L    P      L     G+ +      ++     I S+  +    +L           
Sbjct: 51  ALADLGP------LDWHFIGRLQANKARGVLRRFGTIHSLDSVALAQRLARIAAEEERSP 104

Query: 124 ---YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
              + ++      + G   +               +   +++      + +      Q  
Sbjct: 105 AVLFQVKFRPDPAKTGFEPEALRARWQELSALPALRPVGLMTIAPMGLEAAERRALFQ-- 162

Query: 181 RFRTLISHYKGIEASLASSSGILLGP---NYHFQLTRPGISLYGGTDKINKSHP 231
               L +     E S+  S      P          R G SL+G     N + P
Sbjct: 163 ECAALAAELGLPERSMGMSG---DWPEAVTAGSTWVRLGSSLFGDRPSQNLAIP 213


>gi|256425949|ref|YP_003126602.1| alanine racemase [Chitinophaga pinensis DSM 2588]
 gi|256040857|gb|ACU64401.1| alanine racemase domain protein [Chitinophaga pinensis DSM 2588]
          Length = 368

 Score = 36.9 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 12/140 (8%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP--- 101
             +    L   G+  F   ++ E   L L      +     + P  ++++      P   
Sbjct: 49  MIEAVQLLQGEGINKFKCATIAEAEMLGLAGAGDVLLAYQPVGPKVDRLLQIVEQYPDTK 108

Query: 102 ----VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKL 154
               V +S   +   +   +   S P  + ++ G NR G+      EA +      +   
Sbjct: 109 YACLVDNSASAIAIAATFAAAQRSIPVYIDLNVGMNRTGVEPGPGNEAQELYQELLHLPG 168

Query: 155 GQLSLIISHLACADDPSSHV 174
                +  H        +  
Sbjct: 169 ITPVGL--HAYDGHLHDTEF 186


>gi|330876097|gb|EGH10246.1| alanine racemase domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 199

 Score = 36.9 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 33/156 (21%)

Query: 49  APALYNAGVQD--FFVTS----VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102
           A   +  G+ D  + V      +++ +KLR    +  I                      
Sbjct: 51  AEHCFAEGINDVFYAVAIAPGKLDQALKLRRNGCRLSIL------------------TDS 92

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLII 161
           + +   +  + +           +++D   +R GL++ + +L     +  +    L  ++
Sbjct: 93  VVAAQAIVAFGQRHDENFD--VWIEIDCDGHRSGLTIDDPSLVEVARTLIEGGMHLRGVM 150

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
           +H   + D  +       E  + L    + +  S A
Sbjct: 151 THAGSSYDLDTP------EALQALAEQERRLCVSAA 180


>gi|307310428|ref|ZP_07590076.1| alanine racemase domain protein [Escherichia coli W]
 gi|306909323|gb|EFN39818.1| alanine racemase domain protein [Escherichia coli W]
 gi|315062257|gb|ADT76584.1| hypothetical protein ECW_m3209 [Escherichia coli W]
 gi|323377159|gb|ADX49427.1| alanine racemase domain protein [Escherichia coli KO11]
          Length = 234

 Score = 36.9 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 76/246 (30%), Gaps = 56/246 (22%)

Query: 16  LKNNWHSMNALSGNAR-----------TAAVVK---DNAYGLGCEKIAPALYNAGVQDFF 61
           + +N   +      A              AV K    +A       IA A  +AG + F 
Sbjct: 4   IAHNLAQVREKISAAATRCGRSPEEITLLAVSKTKPASA-------IAEA-IDAGQRQFG 55

Query: 62  VTSVEEGV-KLR---LYTPQARIFVLYGIH-----PGQEKIIFDTNLIPVISSVPQLTFY 112
              V+EGV K+R             L           + +++ +        ++ +L   
Sbjct: 56  ENYVQEGVDKIRHFQELGVTG----LEWHFIGPLQSNKSRLVAEHFDWC--HTIDRLRIA 109

Query: 113 SKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
           ++L          ++    + +    ++ G+ L E  +           +L  ++     
Sbjct: 110 TRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLM----A 165

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGIE---ASLASSSGILLGPN-----YHFQLTRPGIS 218
              P S     Q E  R +   + G++     + + S  +             + R G +
Sbjct: 166 IPAPESEYV-RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTA 224

Query: 219 LYGGTD 224
           ++G  D
Sbjct: 225 IFGARD 230


>gi|71909495|ref|YP_287082.1| hypothetical protein Daro_3884 [Dechloromonas aromatica RCB]
 gi|71849116|gb|AAZ48612.1| Protein of unknown function UPF0001 [Dechloromonas aromatica RCB]
          Length = 229

 Score = 36.9 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 55/213 (25%)

Query: 14  TALKNNWHSMNAL-----------SGNARTAAVVKDNAYGLGCEKIAPA--------LYN 54
           +A+ +N  ++++                R  AV             +            +
Sbjct: 2   SAIADNLQAVHSRIALAAAAAGRSPDTVRLLAV-------------SKTWPLSCVLDAAD 48

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ------EKIIFDTNLIPVISSVPQ 108
           AG + F    V+EG+  ++     R    + I P Q          FD      + S+ +
Sbjct: 49  AGQRAFGENYVQEGID-KIAAISGRNLEWHFIGPLQSNKSRPVAERFDW-----VHSIER 102

Query: 109 LTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
           L    +L +        +     + V    ++ G +  EA     +       +L  ++ 
Sbjct: 103 LKIAERLSAQRPAYLPPLQVCIQVNVSGEASKSGCAPDEAPALCKSIAALPGLRLRGLM- 161

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEAS 195
                 +P+  +++ Q   FR L   Y+ I AS
Sbjct: 162 ---AIPEPTDDLDA-QRLPFRQLREIYEHIRAS 190


>gi|323453722|gb|EGB09593.1| hypothetical protein AURANDRAFT_24590 [Aureococcus anophagefferens]
          Length = 393

 Score = 36.9 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 57/220 (25%), Gaps = 33/220 (15%)

Query: 51  ALYNAGVQDFFVTSVEEGVKL------RLYTPQARIFVLYGIHPGQEKIIFDTNLIP--- 101
           AL +AGV+ F   +  E   L      R    +  + V     P     +          
Sbjct: 70  ALCDAGVRHFKCATSREAELLGSTLAARDGAFE--VLV---AFPHTGPTLARLGRTAARY 124

Query: 102 ---VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
              V  SV          +        + V+ G +R G SL  A D            L+
Sbjct: 125 AANVAWSVLVEDAAGAEGAVDAGLGVYVDVNCGMDRTGTSLDGAGDVLARVRAVAGTDLA 184

Query: 159 LIISHLACADDPSSHVNSVQLERF-------------RTLISHYKGIEASLASSSGILLG 205
            I  +   A       ++     F               + +    +  SLA     L  
Sbjct: 185 GIHMYDGHAASLGDTADARNAALFPLYDDLLALDGALDLVTAGTPALLPSLAH--AGLRD 242

Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
              H       + L     +      ++      +R++  
Sbjct: 243 SGRHRVSA-GTVVLSDTRAEAQCPLGLRPAAVVASRVVST 281


>gi|119899756|ref|YP_934969.1| hypothetical protein azo3467 [Azoarcus sp. BH72]
 gi|119672169|emb|CAL96083.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 237

 Score = 36.9 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 29/196 (14%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVP 107
                 AG + F    V+E +  +L          + I P Q  K          + S+ 
Sbjct: 43  VREAAAAGQRAFGENYVQEALA-KLAEVDDPALEWHFIGPLQSNKTRAVAQHFAWVHSID 101

Query: 108 QLTFYSKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
           +L    +L +        ++    + V    ++ G++  E L             L  ++
Sbjct: 102 RLKLAERLSAQRDVHLPPLNVCLQVNVSGEDSKSGVAPDEVLPLARGVAALPRLVLRGLM 161

Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSS---GILLGPNYH--------- 209
               C  +P+  V  +Q  RF T     +G+  +LA+       L     H         
Sbjct: 162 ----CIPEPTDDVT-LQRRRFAT----LRGLRDTLAAEGIVLDTLSMGMSHDLEAAVAEG 212

Query: 210 FQLTRPGISLYGGTDK 225
             L R G +++G   +
Sbjct: 213 ATLVRVGTAIFGARPR 228


>gi|238021818|ref|ZP_04602244.1| hypothetical protein GCWU000324_01722 [Kingella oralis ATCC 51147]
 gi|237866432|gb|EEP67474.1| hypothetical protein GCWU000324_01722 [Kingella oralis ATCC 51147]
          Length = 111

 Score = 36.9 bits (85), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 136 GLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA- 194
           G++ +E               L  ++     +   +S     Q  +  +L++  +     
Sbjct: 15  GIAPEELPALAQAIAPLPRLNLRGLMC--VASHTDNSDQLRQQFTQMHSLLAQLRPHAPQ 72

Query: 195 ----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229
               S+  SS + L       + R G +++G  D  N +
Sbjct: 73  ADTLSMGMSSDMNLAIECGATMVRIGSAIFGKRDYPNAA 111


>gi|261346263|ref|ZP_05973907.1| pyridoxal phosphate enzyme, YggS family [Providencia rustigianii
           DSM 4541]
 gi|282565572|gb|EFB71107.1| pyridoxal phosphate enzyme, YggS family [Providencia rustigianii
           DSM 4541]
          Length = 230

 Score = 36.9 bits (85), Expect = 5.3,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 16/152 (10%)

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ---EKIIFDTNLIPVISSVPQ 108
             +AG++ F    V+EGV+   Y       V + I P Q    +++ +        ++ +
Sbjct: 45  AIDAGLRQFGENYVQEGVEKIQYFADRTDLVWHFIGPLQSNKSRLVAEHFDW--FHTLDR 102

Query: 109 LTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                +L      +   L V    N      + G+ L++               L  +++
Sbjct: 103 AKIAQRLNEQRPQNKAPLNVLIQINISDENSKSGIKLEDVDALAAQVAQLPNLVLRGLMT 162

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEA 194
                  P +     Q   FR +   ++ ++ 
Sbjct: 163 ----IPAPETDY-ERQCAAFRQMEQAFQQLKN 189


>gi|319893129|ref|YP_004150004.1| hypothetical protein SPSINT_1840 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162825|gb|ADV06368.1| Hypothetical protein SPSINT_1840 [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 358

 Score = 36.9 bits (85), Expect = 5.3,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 83/261 (31%), Gaps = 31/261 (11%)

Query: 6   FLRLKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57
             ++ I+L+ +K N   +          +    +            G  K+       G 
Sbjct: 1   MPQIHINLSKIKYNAMVLQHMLAEQGIRMIPVTKCMG---------GDPKVRQQFREMGF 51

Query: 58  QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLM 116
                + +   +      P     ++ G  P +   +   + I + + +  +   S + +
Sbjct: 52  NTLAESRLT-AMMTNEQHPTEHDMMIKGALPNEIHDVVRYSQISIQTELETIRALSDEAV 110

Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVN 175
           + GV H   L VD    R G    E +         K   L  +  +  C    P +  +
Sbjct: 111 AQGVKHHIYLMVDWKDGREGALTYEVVPLIKEIIRLKGVYLKGLSFNFMCFRQIPPTEED 170

Query: 176 SVQLERFRTLISHYKGIE---ASLASSSGILLGPNY----HFQLTRPGISLY-GGTDKIN 227
            V +  F   +    G++    S  +SS +L    Y         R G +L+ G     N
Sbjct: 171 IVYINYFIESVERDTGVKFKTISGGNSS-MLTLAMYADLGRINELRIGEALFRGYETAYN 229

Query: 228 KSHPM--QTVVTAEARIILIR 246
              P      VT   RI+ I+
Sbjct: 230 MRLPYLFDNAVTLSGRILEIK 250


>gi|294628450|ref|ZP_06707010.1| alanine racemase [Streptomyces sp. e14]
 gi|292831783|gb|EFF90132.1| alanine racemase [Streptomyces sp. e14]
          Length = 400

 Score = 36.9 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 52/188 (27%), Gaps = 55/188 (29%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA------PALYN-------- 54
             +DL A   N   +   +G                  ++A       AL          
Sbjct: 23  AIVDLEAFDANADDLARRAGGKPI--------------RVASKSVRCRALLERVLARDGF 68

Query: 55  AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ----EKIIFDTNL----IPVISSV 106
           AG+  F   ++ E + L     +    VL            ++  D  L      ++   
Sbjct: 69  AGIMSF---TLAESLWLARSGFED---VLLAYPSADRAGFAELAADPKLAAAVTVMVDDP 122

Query: 107 PQLTFYSKLMSCGV-SHPYALQVDT------GFNRLGL------SLQEALDFTHNSFNKK 153
            QL         G  +    L++DT      G  R+G       S  E  +       + 
Sbjct: 123 AQLDLIDAARQGGRETVRVCLELDTSLRLLGGRVRVGARRSPLHSPAEIAEVARTVVRRP 182

Query: 154 LGQLSLII 161
             +L  I+
Sbjct: 183 GFELVGIM 190


>gi|241766468|ref|ZP_04764338.1| alanine racemase domain-containing protein [Acidovorax
          delafieldii 2AN]
 gi|241363320|gb|EER58850.1| alanine racemase domain-containing protein [Acidovorax
          delafieldii 2AN]
          Length = 85

 Score = 36.9 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 18/71 (25%)

Query: 9  LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
          L +DL A++ N   M   +         +A+               +IA  L  AG    
Sbjct: 24 LVVDLDAMERNIQRMADFARKHRVRWRPHAKM----------HKSAEIALLLQQAGATGA 73

Query: 61 FVTSVEEGVKL 71
           V  V E   L
Sbjct: 74 CVQKVAEAEAL 84


>gi|110835530|ref|YP_694389.1| hypothetical protein ABO_2669 [Alcanivorax borkumensis SK2]
 gi|110648641|emb|CAL18117.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 230

 Score = 36.9 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 65/199 (32%), Gaps = 29/199 (14%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIP 101
            +++A  L + G + F    ++E +  ++   + R  V      I   + + I       
Sbjct: 41  ADELAK-LADQGQRHFGENYLQEALA-KIAALRGRGLVWHFIGPIQSNKTRDIAAHFDW- 97

Query: 102 VISSVPQLTFYSKL------MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155
            + SV +L    +L       S  ++    + VD   ++ G++L    +           
Sbjct: 98  -VHSVDRLKVARRLSEQRPPESAPLNLCIQVNVDDEASKSGVALAGVAELAAAVDALPNI 156

Query: 156 QLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SLASSS----GILLGP 206
           +L  ++   A     +   N     +    +S  +         S+  S+     I  G 
Sbjct: 157 RLRGLM---AIPRADNDDGNRAAFRQLAMTLSQLRNTMPALDTLSMGMSADYPVAIEEGA 213

Query: 207 NYHFQLTRPGISLYGGTDK 225
                  R G +L+G    
Sbjct: 214 TV----IRLGTALFGPRPP 228


>gi|254230227|ref|ZP_04923619.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262393230|ref|YP_003285084.1| hypothetical protein VEA_002457 [Vibrio sp. Ex25]
 gi|151937259|gb|EDN56125.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262336824|gb|ACY50619.1| hypothetical protein VEA_002457 [Vibrio sp. Ex25]
          Length = 233

 Score = 36.9 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 68/189 (35%), Gaps = 19/189 (10%)

Query: 52  LYNAGVQDFFVTSVEEGV----KLRLYTPQARI---FVLYGIHPGQEKIIFDTNLIPVIS 104
            + AG   F    V+EGV        + P  RI   F+   I   + +++ +      + 
Sbjct: 46  AHQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFI-GPIQSNKSRLVAEHFDW--VH 102

Query: 105 SVPQLTFYSKLMSCG----VSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLS 158
           ++ +     +L              +QV+T    ++ G++  E  +            L 
Sbjct: 103 TIDRTKIAQRLNDQRPSELKPLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLR 162

Query: 159 LIISHLACADDPSSHVNSVQ-LERFRTLI-SHYKGIEA-SLASSSGILLGPNYHFQLTRP 215
            ++S  A   D  S ++  Q L   +  + + +  I+  S+  S  +         + R 
Sbjct: 163 GLMSIPANVSDYESQLHEFQKLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRI 222

Query: 216 GISLYGGTD 224
           G +++G  D
Sbjct: 223 GTAIFGARD 231


>gi|119963284|ref|YP_946033.1| alanine racemase N-terminal domain-containing protein [Arthrobacter
           aurescens TC1]
 gi|119950143|gb|ABM09054.1| putative alanine racemase, N-terminal domain protein [Arthrobacter
           aurescens TC1]
          Length = 366

 Score = 36.9 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 84/267 (31%), Gaps = 36/267 (13%)

Query: 9   LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           + ID+  L  N   M          L  + +T              +IA     AG    
Sbjct: 13  VLIDVDVLDRNIERMAGNMRGRGLQLRPHVKT----------HKTLEIARKQLAAGALGI 62

Query: 61  FVTSVEEGVKLRLYTPQARIFV---LYGIHPGQEKIIF---DTNLIPVISSVPQLTFY-S 113
            V ++ E  ++        IF+   L+   P  E++        L   + S    T    
Sbjct: 63  TVATIGEA-EVFAADGVKDIFIAFPLWVEAPHAERLRALTAKCRLAVGVDSAESATAMGR 121

Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS---HLACADDP 170
           +L     S    ++VD+G +R G+     +     +       +  + +   H      P
Sbjct: 122 QLGVDAGSVEVLIEVDSGHHRSGVLPD-EVVDVAEAAAAAGLSVQGVFTFPGHSYKPGMP 180

Query: 171 SSHVNSVQLERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-- 224
           +   ++              + ++    S  S+   L+         RPG+ ++G     
Sbjct: 181 TGAASNENEALGLAATALTSAGFEVTTISGGSTPTALIDGETVATELRPGVYVFGDAQQL 240

Query: 225 KINKSHPMQTVVTAEARIILIRKALAG 251
           ++ +       ++  A ++   +A  G
Sbjct: 241 ELERCSWDDIALSVAATVVSRHEARGG 267


>gi|83588907|ref|YP_428916.1| pyruvate flavodoxin/ferredoxin oxidoreductase-like [Moorella
           thermoacetica ATCC 39073]
 gi|83571821|gb|ABC18373.1| Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein
           [Moorella thermoacetica ATCC 39073]
          Length = 363

 Score = 36.9 bits (85), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 26/116 (22%)

Query: 43  LGCE-KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA----RIFVLYGIHPGQE-KIIFD 96
            G   + A A  ++               LR    +A     I  L          +   
Sbjct: 266 HGVVSRAARAAVDS---------------LREAGIKAGYFRPIT-LRPFPEEALQPLAAR 309

Query: 97  TNLIPVISSVP-QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
              I V+ S   QL    +    G+  P +  +  G    G++ +E +     +  
Sbjct: 310 AQRILVVESAHGQLERQVRASLYGLETPVSGYLRPGM---GITPEEIIGAVQQTIR 362


>gi|271500712|ref|YP_003333737.1| alanine racemase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344267|gb|ACZ77032.1| alanine racemase domain protein [Dickeya dadantii Ech586]
          Length = 423

 Score = 36.9 bits (85), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 22/161 (13%)

Query: 14  TALKNNWHSMNALSGNARTA-AVVKDNAYGLG-----CEKIAPALYNAGVQDFFVTSVEE 67
           +AL+NN   + A         A         G        +  A+   G       +  +
Sbjct: 55  SALENNLRQLAAFCRERGVMLAA-------HGKTSMSATVLRRAITEGGAWGISAATPAQ 107

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIF-------DTNLIPVISSVPQLTFYSKLMSCGV 120
              LR +  +        + P   + I        D   +  + S+  +    + +    
Sbjct: 108 VRALRHFGIRNVFLANQLVDPAGIRWIAQWQQQHPDHGFLCYVDSLHGVKLLEQHLGHS- 166

Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLI 160
                L++     R G  SL++A+            QL  +
Sbjct: 167 RISVLLEMSVSGGRTGCRSLKDAVMIADAIAASPSLQLVGV 207


>gi|284030824|ref|YP_003380755.1| alanine racemase domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283810117|gb|ADB31956.1| alanine racemase domain protein [Kribbella flavida DSM 17836]
          Length = 241

 Score = 36.9 bits (85), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 14/94 (14%)

Query: 98  NLIPVISSVPQLTFYSKLMSCGVSHPYAL--------------QVDTGFNRLGLSLQEAL 143
            L  V+ SV + +  S L    V+    +              +  TG +R G++  +  
Sbjct: 98  RLAQVVHSVDRKSLVSALSKAAVAEQKTMRCLLQVSLAEYGSAEAATGTSRGGVTPADVP 157

Query: 144 DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
           +           +L  +++      DP     ++
Sbjct: 158 ELAAAVAEADGLELGGVMAVAPLGADPDEAFAAL 191


>gi|145234959|ref|XP_001390128.1| metal-activated pyridoxal enzyme [Aspergillus niger CBS 513.88]
 gi|134057804|emb|CAK38199.1| unnamed protein product [Aspergillus niger]
          Length = 368

 Score = 36.6 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFV---LYGIHPGQ--EKIIFDT--NLIPVISS-VP 107
           G +   V  V E   +        I +   + G    Q   +++      L  V+ S V 
Sbjct: 63  GAKGCCVAKVSEAEAITAAGFD-DILITCEIIGAPKVQRLVELVRKHPGRLRTVVDSEVG 121

Query: 108 QLTFYSKLMSCGVSHPYALQVDT--GFNRLGL 137
                  L   G++ P A+ +D   G +R G+
Sbjct: 122 ATAIDEALEQAGITTPLAVLIDLDVGLHRTGV 153


>gi|169796921|ref|YP_001714714.1| hypothetical protein ABAYE2917 [Acinetobacter baumannii AYE]
 gi|169149848|emb|CAM87739.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
          Length = 235

 Score = 36.6 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 14  TALKNNWHSMN------ALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            A ++    +         +    +  AV K        E++   +Y AG + F    ++
Sbjct: 11  DARQHVLQQIKTACELAQRAPETVQLLAVSKT----HQSERL-REMYAAGQRAFGENYLQ 65

Query: 67  EGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS----- 117
           E +     L+    +        +   + K + +      +  V +L    +L +     
Sbjct: 66  EALDKIDALQDLDIEWHFI--GHVQRNKTKHLAEQFDW--VHGVDRLIIAERLSNQRGDD 121

Query: 118 -CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              ++    + +D   ++ G + ++  +           +L  ++        P +    
Sbjct: 122 QAALNICLQVNIDGQDSKDGCAPEDVAELVAQMSQLPKIRLRGLM----VIPAPDNTAAF 177

Query: 177 VQLER-FRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
           V  ++ F  +   +   E     S+  SS +         + R G +L+G  D
Sbjct: 178 VDAKKLFDAVKDQHAHPEEWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARD 230


>gi|294788029|ref|ZP_06753273.1| pyridoxal phosphate enzyme, YggS family [Simonsiella muelleri ATCC
           29453]
 gi|294484322|gb|EFG32005.1| pyridoxal phosphate enzyme, YggS family [Simonsiella muelleri ATCC
           29453]
          Length = 227

 Score = 36.6 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 76/237 (32%), Gaps = 46/237 (19%)

Query: 16  LKNN----WHSMN-------ALSGNARTAAVVK----DNAYGLGCEKIAPALYNAGVQDF 60
           L++N       +         +SG+    AV K     +            LY  G +DF
Sbjct: 4   LEHNRQSVLQQIRIAEQNAQRVSGSVNLIAVSKTFPAAD---------IRQLYQHGQRDF 54

Query: 61  FVTSVEE----GVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
               ++E     ++L      Q  I     +   + + + +      + ++ +     +L
Sbjct: 55  GENYIQEWQEKTIQLMDCNEIQWHII--GHVQSNKTRAVAEHAHW--LHTLDRAKIAERL 110

Query: 116 MSCGVS----HPYALQVDTGFNRL--GLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
                         ++++    R   G+   E L       +    +L  ++  +A A+ 
Sbjct: 111 HEQRPDSLPPLNICIEINIANERTKHGIQPDELLPLARTVLSLSKLRLRGLMC-VAQANA 169

Query: 170 PSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG 221
             + +   Q  R   L+   + I       S+  S  + +       + R G +++G
Sbjct: 170 TETEL-RQQFNRMAELLRQLQTIAPNADTLSMGMSGDMNVAIECGATMVRVGTAIFG 225


>gi|260460667|ref|ZP_05808918.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium opportunistum WSM2075]
 gi|259033772|gb|EEW35032.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium opportunistum WSM2075]
          Length = 377

 Score = 36.6 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 24/198 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ +      ++R    VK N A      +I   L   G   F   SV E
Sbjct: 20  LVVDLDVVRDNFRAFEKALPDSRIYYAVKANPA-----PEILRLLAAMG-SSFDTASVAE 73

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL---IPVISSVPQLTFYSKLMSCGVSHPY 124
                     A           +  I     L   +  +  V ++   +++         
Sbjct: 74  VEMAMDAGAPADRISFGNTIKKERDIARAYQLGIRLFAVDCVEEVEKVARVAPGSRVFCR 133

Query: 125 ALQVDTG----FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179
            L    G     +R  G     A+D   ++    L     +  H+              L
Sbjct: 134 VLTDGEGAEWPLSRKFGCVPAMAVDVLRHAKGLGLDA-YGVSFHVGSQQTD--------L 184

Query: 180 ERFRTLISHYKGIEASLA 197
             +   +   K + A+LA
Sbjct: 185 TAWDRALRDAKTVFATLA 202


>gi|148827239|ref|YP_001291992.1| hypothetical protein CGSHiGG_03010 [Haemophilus influenzae PittGG]
 gi|148718481|gb|ABQ99608.1| hypothetical protein CGSHiGG_03010 [Haemophilus influenzae PittGG]
          Length = 233

 Score = 36.6 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 79/242 (32%), Gaps = 45/242 (18%)

Query: 15  ALKNNWHSMNALSGNA-----------RTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61
            +++N + +      A           +  AV K        + I+  L  Y AG   F 
Sbjct: 2   NIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKT-------KPISAILSAYQAGQTAFG 54

Query: 62  VTSVEEGVKLRLYTPQARIFVLYGIH-----PGQEKIIFDT-NLIPVISSVPQLTFYSKL 115
              V+EGV+ ++   +++   L           + +++ +  + +  +         ++ 
Sbjct: 55  ENYVQEGVE-KIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQ 113

Query: 116 M---SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172
                  ++    + +    ++ G+  +E L    +  N     L  ++   A       
Sbjct: 114 RPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLM---AIPAPTDK 170

Query: 173 HVNSVQLERFRTLISHYKGIEASLAS------SSGILLGPNY----HFQLTRPGISLYGG 222
                Q   FR +   ++ ++  L +      S G+             + R G +++G 
Sbjct: 171 I--PEQEAVFRKMSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGT 228

Query: 223 TD 224
            D
Sbjct: 229 RD 230


>gi|222149795|ref|YP_002550752.1| ornithine decarboxylase [Agrobacterium vitis S4]
 gi|221736777|gb|ACM37740.1| ornithine decarboxylase [Agrobacterium vitis S4]
          Length = 377

 Score = 36.6 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 15/125 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN---AYGLGCEKIAPALYNAGV--QDFFVT 63
           L +DL  +++N+ +      ++     VK N   A       I   L + G       V 
Sbjct: 20  LVVDLDVVRDNYGAFRHALPDSAIYYAVKANPEPA-------ILSLLASLGSNFDCASVA 72

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
            +E  +        A+          +  I     L   + +V       K+        
Sbjct: 73  EIEMALA---AGATAQRISFGNTIKKERDIAKAHALGINLFAVDSHEEVEKIARAAPGAR 129

Query: 124 YALQV 128
              +V
Sbjct: 130 VFCRV 134


>gi|213156676|ref|YP_002318337.1| hypothetical protein AB57_0946 [Acinetobacter baumannii AB0057]
 gi|215484383|ref|YP_002326614.1| UPF0001 protein [Acinetobacter baumannii AB307-0294]
 gi|301345278|ref|ZP_07226019.1| hypothetical protein AbauAB0_03519 [Acinetobacter baumannii AB056]
 gi|301510182|ref|ZP_07235419.1| hypothetical protein AbauAB05_01354 [Acinetobacter baumannii AB058]
 gi|301595729|ref|ZP_07240737.1| hypothetical protein AbauAB059_07952 [Acinetobacter baumannii
           AB059]
 gi|332853754|ref|ZP_08434966.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
           6013150]
 gi|332871126|ref|ZP_08439724.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
           6013113]
 gi|213055836|gb|ACJ40738.1| hypothetical protein AB57_0946 [Acinetobacter baumannii AB0057]
 gi|213987503|gb|ACJ57802.1| UPF0001 protein [Acinetobacter baumannii AB307-0294]
 gi|332728440|gb|EGJ59815.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
           6013150]
 gi|332731712|gb|EGJ62993.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
           6013113]
          Length = 230

 Score = 36.6 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 14  TALKNNWHSMN------ALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
            A ++    +         +    +  AV K        E++   +Y AG + F    ++
Sbjct: 6   DARQHVLQQIKTACELAQRAPETVQLLAVSKT----HQSERL-REMYAAGQRAFGENYLQ 60

Query: 67  EGV----KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS----- 117
           E +     L+    +        +   + K + +      +  V +L    +L +     
Sbjct: 61  EALDKIDALQDLDIEWHFI--GHVQRNKTKHLAEQFDW--VHGVDRLIIAERLSNQRGDD 116

Query: 118 -CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
              ++    + +D   ++ G + ++  +           +L  ++        P +    
Sbjct: 117 QAALNICLQVNIDGQDSKDGCAPEDVAELVAQMSQLPKIRLRGLM----VIPAPDNTAAF 172

Query: 177 VQLER-FRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGGTD 224
           V  ++ F  +   +   E     S+  SS +         + R G +L+G  D
Sbjct: 173 VDAKKLFDAVKDQHAHPEEWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARD 225


>gi|326331313|ref|ZP_08197605.1| Orn/DAP/Arg decarboxylase 2 [Nocardioidaceae bacterium Broad-1]
 gi|325950946|gb|EGD42994.1| Orn/DAP/Arg decarboxylase 2 [Nocardioidaceae bacterium Broad-1]
          Length = 457

 Score = 36.6 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 9/117 (7%)

Query: 87  HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGF-------NRLGLSL 139
            P   + I    +      + +L   +     G + P  L++ +GF       +R G+ L
Sbjct: 115 SPAFIQRIASLGVTTNADDLWELDRLAAAAPAGSTVPVLLRL-SGFASPLVPPSRFGIDL 173

Query: 140 QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
            +A             +L  +  HL  A DP++ V+++         ++ KG+  S+
Sbjct: 174 ADADAALETVRRAPGLELRGVAFHLDTA-DPAARVDALTESMAVVSAAYRKGLRPSV 229


>gi|7514624|pir||H71378 conserved hypothetical protein TP0866 - syphilis spirochete
          Length = 646

 Score = 36.6 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 42  GLGCEKIAPALYN-AGVQDFFVTSVEEGVKLR 72
           G    KIA  + +  GV    V  V+E V LR
Sbjct: 604 GHAVLKIARTIADIEGVARLQVAHVQEAVALR 635


>gi|242399484|ref|YP_002994909.1| Deblocking aminopeptidase [Thermococcus sibiricus MM 739]
 gi|242265878|gb|ACS90560.1| Deblocking aminopeptidase [Thermococcus sibiricus MM 739]
          Length = 348

 Score = 36.6 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 45  CEKIAPALYNAGVQDFFVTSVEEGVKLR 72
             ++A AL       +FV SV+E V LR
Sbjct: 187 MIEVARALEEHQADIYFVASVQEEVGLR 214


>gi|90418874|ref|ZP_01226785.1| NAD-binding oxidoreductase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336954|gb|EAS50659.1| NAD-binding oxidoreductase [Aurantimonas manganoxydans SI85-9A1]
          Length = 389

 Score = 36.6 bits (84), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 17/146 (11%)

Query: 47  KIAPALYNAGVQDFF----VTSVEEGVKLRL-YTPQARIFVL-----YGIHPGQEKIIF- 95
            +A      G+         T++ E  +L        +IFVL           Q + +  
Sbjct: 101 PVAKTFLEVGIHVICDKPMTTTLAEAQELAEIAAASGKIFVLTHNYTGYPMIRQARAMVA 160

Query: 96  --DTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-- 151
             D   I ++ +     + +       S     +VD      G S+ +     HN     
Sbjct: 161 AGDLGTIRMVHAEYIQDWLADRAEDTGSKQAGWRVDPAKAGAGGSIGDIGTHAHNLACFV 220

Query: 152 --KKLGQLSLIISHLACADDPSSHVN 175
              K+ +LS  +S      +   + N
Sbjct: 221 TGLKVERLSADLSSFVEGRELDDNAN 246


>gi|296446216|ref|ZP_06888163.1| Orn/DAP/Arg decarboxylase 2 [Methylosinus trichosporium OB3b]
 gi|296256253|gb|EFH03333.1| Orn/DAP/Arg decarboxylase 2 [Methylosinus trichosporium OB3b]
          Length = 380

 Score = 36.6 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 59/205 (28%), Gaps = 21/205 (10%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +DL  +++N+ S      + R    VK N A      ++   L   G   F   SV E
Sbjct: 23  LVVDLDIVRDNYQSFARALPDTRVFYAVKANPA-----PEVLALLARLG-SCFDTASVVE 76

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
             +                   +  I     L   + +V       K+           +
Sbjct: 77  IEQTLAAGATPDRISFGNTIKKERDIARAYALGVRLFAVDCEAEVEKIARAAPGARVFCR 136

Query: 128 V----DTG---FNR-LGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
           +    D      +R  G + Q     L+  H       G    + S           + S
Sbjct: 137 ILCDGDGAEWPLSRKFGCAPQMAPRVLEHAHRLGLTAYGVSFHVGSQQRDPGMWDGALKS 196

Query: 177 VQLERFRTLISHYKGIEASLASSSG 201
              E F  L    +GI+  + +  G
Sbjct: 197 A-AEIFNDLAE--RGIQLQMVNLGG 218


>gi|32473190|ref|NP_866184.1| phoH-like protein [Rhodopirellula baltica SH 1]
 gi|32397869|emb|CAD73870.1| phoH-like protein [Rhodopirellula baltica SH 1]
          Length = 382

 Score = 36.6 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 14/173 (8%)

Query: 55  AGV--QDFFVTSVEEGVKLRLYTPQARIFVL--------YGIHPGQEKIIFDTNLIPVIS 104
           AG       V +  E   LR  + +  + V          G  PG  +   +  L P++ 
Sbjct: 142 AGCGKTYLAVATAVEA--LRNESIKKIVLVRPAVEAGESLGFLPGDLRAKLNPYLRPLLD 199

Query: 105 SVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL 164
           ++ ++  Y +  +        + V   + R G +L +A      + N  + Q+ + ++ +
Sbjct: 200 ALGEMVDYDQARALMEQDVIEI-VPLAYMR-GRTLNDAFIILDEAQNTTVAQMKMFLTRM 257

Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGI 217
                     ++ QL+  R + S        L+S  GI         + R  +
Sbjct: 258 GERSKMVVSGDATQLDLPRGVRSGLHDALYRLSSIKGIAQIRLGAADIVRHRL 310


>gi|296114825|ref|ZP_06833474.1| hypothetical protein GXY_03573 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978639|gb|EFG85368.1| hypothetical protein GXY_03573 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 295

 Score = 36.6 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 15/184 (8%)

Query: 51  ALYNAGVQDFFVTSVEEGV----KLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISS 105
           A   AG   F    V+E       LR   P  R+ ++ G+   +        ++I  +  
Sbjct: 115 AALRAGQMTFGENRVQEAADKFPSLRAQWPDLRLNIIGGLQTNKAYDAVRIADMIESLDR 174

Query: 106 VPQLTFYSKLMSCGVSHPYAL-QVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162
                  ++        P  L QV+TG    + G++++EA  F   +  +    ++ ++ 
Sbjct: 175 ATLCDAIARAADRVGRLPRLLVQVNTGDETQKSGVAVEEADAFITAAIARFGDAVAGLMC 234

Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYG 221
                 DP+ H       R    ++   G+   S+  S+             R G +++G
Sbjct: 235 IPPVDQDPTPHF------RTLATMAGRHGLGVISMGMSADFEQAIVAGATHVRVGSAIFG 288

Query: 222 GTDK 225
               
Sbjct: 289 PRPT 292


>gi|154253672|ref|YP_001414496.1| Orn/DAP/Arg decarboxylase 2 [Parvibaculum lavamentivorans DS-1]
 gi|154157622|gb|ABS64839.1| Orn/DAP/Arg decarboxylase 2 [Parvibaculum lavamentivorans DS-1]
          Length = 433

 Score = 36.6 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 73/226 (32%), Gaps = 26/226 (11%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           L +D+  + +N+  + +   +AR    VK N A     ++I   L   G   F   S+ E
Sbjct: 76  LVVDVDIVAHNFGELASSLPDARIFYAVKANPA-----DEIVSRLAGLG-SSFDTASMGE 129

Query: 68  GVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            + L L +   A           +  I         + +        K+           
Sbjct: 130 -IDLCLSHGVSADRLSFGNTIKKERDIAAAYAKGVRMFAFDSTAELDKIARVAPGSKVYC 188

Query: 127 QVDTG-------FNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--- 175
           +V           +R  G     A+D    +    L     +  H+       +  +   
Sbjct: 189 RVLMECEGAEWPLSRKFGCEPAMAVDLLVRAKALGLDA-YGVSFHVGSQQTDLTQYDKAL 247

Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221
           ++ L  FR L    +G++  + +  G   G    ++   P IS YG
Sbjct: 248 ALSLSLFRDL--EARGVKLRMVNMGG---GFPSRYRTDVPSISAYG 288


>gi|254720286|ref|ZP_05182097.1| metal-activated pyridoxal protein [Brucella sp. 83/13]
 gi|265985304|ref|ZP_06098039.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
 gi|306839821|ref|ZP_07472620.1| metal-activated pyridoxal protein [Brucella sp. NF 2653]
 gi|264663896|gb|EEZ34157.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
 gi|306405097|gb|EFM61377.1| metal-activated pyridoxal protein [Brucella sp. NF 2653]
          Length = 355

 Score = 36.6 bits (84), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 11/141 (7%)

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
              + M+        ++ DTG  R G+ +  +A +               ++++ A    
Sbjct: 121 LAQRFMNEKRPLKVLVECDTGMGRCGVQTPGQARELARIIEKSAGLCFGGLMTYPATG-- 178

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT----RPGISLY--GGT 223
                    L   R L++   GI     SS G         +      RPG  +Y     
Sbjct: 179 -RGDEAERWLRAARDLLAA-DGIACETISSGGTPDMWRIPAETVVTEYRPGTYIYFDRYQ 236

Query: 224 DKINKSHPMQTVVTAEARIIL 244
                +      +T  A ++ 
Sbjct: 237 VAEGAATINDCALTVLATVVS 257


>gi|83767293|dbj|BAE57432.1| unnamed protein product [Aspergillus oryzae]
          Length = 498

 Score = 36.6 bits (84), Expect = 6.6,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 71  LRLYTPQAR-IFVLYGIH--PGQE--KIIFDTNLIP-----VISSVPQLTFYSKLMS-CG 119
           LR +  + R + +LYGI   P Q     +    L P     +I    Q+ F        G
Sbjct: 143 LREFQSKGRKVNILYGIPLVPSQVSRLALAAAELGPDSVSVMIDHPDQIKFLDTFSRIAG 202

Query: 120 VSHPYALQVDTGFNRLGLSLQE-----ALDFTHNSFNKKLGQLSLIISHLACAD 168
            +    L+VD G++R GL  +                   G+L  I SH + + 
Sbjct: 203 FAAGVFLKVDCGYHRAGLPPRAMDKGGLFSKLEELEKTGAGRLVGIYSHSSLSY 256


>gi|257791830|ref|YP_003182436.1| alanine racemase domain-containing protein [Eggerthella lenta DSM
           2243]
 gi|257475727|gb|ACV56047.1| alanine racemase domain protein [Eggerthella lenta DSM 2243]
          Length = 234

 Score = 36.6 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 44  GCEKIAPALYNAGVQDFFVTSVE--EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP 101
           G +++A A   AG  DF     +  EG   R   PQ     +  I   +   I       
Sbjct: 38  GADEVAEA-IEAGAHDFGENRPDSLEGK--RARFPQQTWHFIGNIQSRRIPDIV--RDAA 92

Query: 102 VISSVPQLTFY----SKLMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLG 155
           ++ S+ Q        +   + G      L+V+     ++ GL+  E              
Sbjct: 93  LVHSLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHV 152

Query: 156 QLSLIISH 163
           ++  +++ 
Sbjct: 153 RVRGLMTM 160


>gi|325830003|ref|ZP_08163461.1| pyridoxal phosphate enzyme, YggS family [Eggerthella sp. HGA1]
 gi|325488170|gb|EGC90607.1| pyridoxal phosphate enzyme, YggS family [Eggerthella sp. HGA1]
          Length = 234

 Score = 36.6 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 44  GCEKIAPALYNAGVQDFFVTSVE--EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP 101
           G +++A A   AG  DF     +  EG   R   PQ     +  I   +   I       
Sbjct: 38  GADEVAEA-IEAGAHDFGENRPDSLEGK--RARFPQQTWHFIGNIQSRRIPDIV--RDAA 92

Query: 102 VISSVPQLTFY----SKLMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLG 155
           ++ S+ Q        +   + G      L+V+     ++ GL+  E              
Sbjct: 93  LVHSLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHV 152

Query: 156 QLSLIISH 163
           ++  +++ 
Sbjct: 153 RVRGLMTM 160


>gi|317489830|ref|ZP_07948327.1| alanine racemase domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911079|gb|EFV32691.1| alanine racemase domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 234

 Score = 36.6 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 44  GCEKIAPALYNAGVQDFFVTSVE--EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP 101
           G +++A A   AG  DF     +  EG   R   PQ     +  I   +   I       
Sbjct: 38  GADEVAEA-IEAGAHDFGENRPDSLEGK--RARFPQQTWHFIGNIQSRRIPDIV--RDAA 92

Query: 102 VISSVPQLTFY----SKLMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLG 155
           ++ S+ Q        +   + G      L+V+     ++ GL+  E              
Sbjct: 93  LVHSLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHV 152

Query: 156 QLSLIISH 163
           ++  +++ 
Sbjct: 153 RVRGLMTM 160


>gi|170290535|ref|YP_001737351.1| diaminopimelate decarboxylase [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170174615|gb|ACB07668.1| diaminopimelate decarboxylase [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 383

 Score = 36.6 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 44/203 (21%)

Query: 11  IDLTALKNNWHSMNALSGNARTAA-VVKDNAYGLGCE-KIAPALYNA--GVQ---DFFVT 63
           IDL  +K N+  ++         A   K N      E ++   L     G      F V 
Sbjct: 22  IDLDRVKENYLRLDKAIKCPHVIAYAYKAN---H--EPELVKLLAKLGSGATVPSAFGV- 75

Query: 64  SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123
                +  R+        VL G  P +  +I   +   +I S+   +  + L S G    
Sbjct: 76  -----ILARISGVPPEKTVLVGPSPSRGDLIEAMDFGAII-SIESHSQANALRSIG-RAN 128

Query: 124 YALQVDTGFN--------------RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
             ++V+ G                + GL  +EAL   ++   KK  +     +H+     
Sbjct: 129 VMVRVNPGVGAGAYPGLVTGGKRSKFGLPPEEALSLFNSL--KKDMRALGFHTHIGSQIF 186

Query: 170 PSSHVNSVQLERFRTLISHYKGI 192
            +          FR  +   KG+
Sbjct: 187 STDP--------FRAALDVIKGL 201


>gi|169842061|ref|ZP_02875166.1| hypothetical protein cdivTM_33162 [candidate division TM7
           single-cell isolate TM7a]
          Length = 37

 Score = 36.6 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 345 DVALASGTTNYDLLVR 360
           +VA   GT +Y++L  
Sbjct: 2   EVAELCGTISYEILCG 17


>gi|330963808|gb|EGH64068.1| hypothetical protein PSYAC_04056 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 228

 Score = 36.6 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 32/168 (19%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           Y AG++DF 
Sbjct: 4   IAANISTLEQRIRDAALAAKRDPASV--------GLLGVSKTKPAGDLREAYTAGLRDFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELADLPLCWHFIGPIQSNKTRAIAENFAW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161
                 ++    + V    ++ G + Q+              +L  ++
Sbjct: 114 PAGLEPLNICIQVNVSGEASKSGCAPQDLPALAAAISALPRLKLRGLM 161


>gi|269965745|ref|ZP_06179842.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829613|gb|EEZ83850.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 233

 Score = 36.6 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 67/189 (35%), Gaps = 19/189 (10%)

Query: 52  LYNAGVQDFFVTSVEEGV----KLRLYTPQARI---FVLYGIHPGQEKIIFDTNLIPVIS 104
            Y AG   F    V+EGV        + P  RI   F+   I   + +++ +      + 
Sbjct: 46  AYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFI-GPIQSNKSRLVAEHFDW--VH 102

Query: 105 SVPQLTFYSKLMSCG----VSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLS 158
           ++ +     +L              +QV+T    ++ G++  E  +            L 
Sbjct: 103 TIDRTKIAQRLNDQRPSELKPLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLR 162

Query: 159 LIISHLACADDPSSHVNSVQ-LERFRTLI-SHYKGIEA-SLASSSGILLGPNYHFQLTRP 215
            ++S  A   D  S +   Q L   +  + + +  I+  S+  S  +         + R 
Sbjct: 163 GLMSIPANVSDYESQLREFQKLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRI 222

Query: 216 GISLYGGTD 224
           G +++G  D
Sbjct: 223 GTAIFGARD 231


>gi|146328880|ref|YP_001209130.1| alanine racemase domain-containing protein [Dichelobacter nodosus
           VCS1703A]
 gi|146232350|gb|ABQ13328.1| alanine racemase domain protein [Dichelobacter nodosus VCS1703A]
          Length = 264

 Score = 36.6 bits (84), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 9/130 (6%)

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167
               +L          +QV+T       G+S + A DF       +  +L  +++     
Sbjct: 136 ELDKRLQQENRQLDVFIQVNTSNEPQKYGISPENAEDFVRQLEAFRSLRLRGLMT--LAI 193

Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGG 222
                        R R L    + I   +A      S    L         R G +L+G 
Sbjct: 194 FSSDKDTVRQCFIRLRQLRDQLQQINPDIAELSMGMSGDFELAIAEGATTVRVGQALFGA 253

Query: 223 TDKINKSHPM 232
             + +  +  
Sbjct: 254 RQQPDSYYWP 263


>gi|288960554|ref|YP_003450894.1| alanine racemase domain-containing protein [Azospirillum sp. B510]
 gi|288912862|dbj|BAI74350.1| alanine racemase domain-containing protein [Azospirillum sp. B510]
          Length = 352

 Score = 36.6 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 106/348 (30%), Gaps = 64/348 (18%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCE-----------KIAPALYNAGVQD 59
           IDL  +++N   M A                  G             + A      G   
Sbjct: 13  IDLDRVEHNLTKMQAYCDR-------------HGLALRPHIKTHKLPQFARRQIELGA-- 57

Query: 60  FFVTS--VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT----NLIPVI-SSVPQLTFY 112
             +T   + E + +        +     +  G+   + +      L   + ++V   T  
Sbjct: 58  VGITCQKISEAMVMADAGCTDILLTYPIVGAGKVAPLAELAGKTKLTVALDNAVALDTVA 117

Query: 113 SKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171
           +     GV     ++ D+G  R G+ +  E L     +    L +   +++       P 
Sbjct: 118 AAATRAGVEIGILVEFDSGDGRCGVQTADEVLTLARRAAGNGLTRFRGLMT------YPR 171

Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231
                  +   R+L+    GI     S  G   G     +L        G     +++  
Sbjct: 172 GPRTVPFIAEARSLLDGA-GIAVETVSVGGT-PGCWDTHELPGVTELRVGTYIYHDRATV 229

Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEH 290
              V T +   + +R               ++R +   AV   G       TLS   S+ 
Sbjct: 230 GAGVATLDECAVHVR------------ATVVSRPTPDRAVLDCG-----SKTLS---SDR 269

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIF 337
                  G G I  Y   ++ ++  +  + D++      E+GD ++I 
Sbjct: 270 VAPSVGEGYGLILDYPDAVIVRVNEEHAVVDLSHCATKPEIGDRVRIL 317


>gi|260204678|ref|ZP_05772169.1| hypothetical protein MtubK8_10278 [Mycobacterium tuberculosis K85]
 gi|289574082|ref|ZP_06454309.1| alanine racemase domain-containing protein [Mycobacterium
           tuberculosis K85]
 gi|289538513|gb|EFD43091.1| alanine racemase domain-containing protein [Mycobacterium
           tuberculosis K85]
          Length = 171

 Score = 36.6 bits (84), Expect = 7.1,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 27/143 (18%)

Query: 44  GCEKIAPALYNAGVQDFFVTSV-----EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN 98
           G  ++     + G  D F+T        +  +LR    +ARI V  G   G         
Sbjct: 5   GDVEV---FVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNT----- 56

Query: 99  LIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS 158
                         ++L     +    +++D+G +R G+  ++ L+  H      L  L 
Sbjct: 57  -------------GARLADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGL-HLV 102

Query: 159 LIISHLACADDPSSHVNSVQLER 181
            + +    +  P     + + ER
Sbjct: 103 GVFTFPGHSYAPGKPGEAGEQER 125


>gi|291060225|gb|ADD72960.1| putative Mg chelatase-like protein [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 646

 Score = 36.6 bits (84), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 42  GLGCEKIAPALYN-AGVQDFFVTSVEEGVKLR 72
           G    KIA  + +  GV    V  V+E V LR
Sbjct: 604 GHAVLKIARTIADIEGVARLQVAHVQEAVALR 635


>gi|306841724|ref|ZP_07474411.1| metal-activated pyridoxal protein [Brucella sp. BO2]
 gi|306288254|gb|EFM59638.1| metal-activated pyridoxal protein [Brucella sp. BO2]
          Length = 355

 Score = 36.6 bits (84), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 11/141 (7%)

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
              + M+        ++ DTG  R G+ +  +A +               ++++ A    
Sbjct: 121 LAQRFMNEKRPLKVLVECDTGMGRCGVQTPGQARELARIIEKSAGLCFGGLMTYPATGRA 180

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT----RPGISLY--GGT 223
             +      L   R L++   GI     SS G         +      RPG  +Y     
Sbjct: 181 DEA---ERWLRAARDLLAA-DGIACETISSGGTPDMWRIPAETVVTEYRPGTYIYFDRYQ 236

Query: 224 DKINKSHPMQTVVTAEARIIL 244
                +      +T  A ++ 
Sbjct: 237 VAEGAATINDCALTVLATVVS 257


>gi|213965302|ref|ZP_03393499.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
 gi|213952154|gb|EEB63539.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
          Length = 429

 Score = 36.6 bits (84), Expect = 7.2,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 60/209 (28%), Gaps = 47/209 (22%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA------PALYNAGVQDF-- 60
           + +DL A++ N   M   +                   ++A      P L +  V  F  
Sbjct: 55  VVVDLAAVEANARDMLRRANGMPI--------------RVASKSIRIPQLISH-VLAFPG 99

Query: 61  --FVT--SVEEGVKLRLYTPQARIFVLYGIHPGQE------KIIFDTNLIPVISSVPQLT 110
              V   S+ E + L        I V Y     +              +  ++     L 
Sbjct: 100 FQGVLAYSLAEALYLFREGISDDIVVAYPTLDARAISELADDDAARAAICVMVDRPEHLE 159

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRL-----------GLSLQEALDFTHNSFNKKLGQLSL 159
             +   S        + VD  F  L             S ++A  F      ++  QL+ 
Sbjct: 160 ALASSASENAPIRVCMDVDASFRPLPGVHIGTLRSSLFSPKQAAAFAKQILARRELQLAG 219

Query: 160 IIS---HLACADDPSSHVNSVQLERFRTL 185
           I+    H+A   D  +   +  +   + +
Sbjct: 220 IMMYEGHIAGVGDAGNSPRARAIRAMQAV 248


>gi|157691761|ref|YP_001486223.1| alanine racemase [Bacillus pumilus SAFR-032]
 gi|157680519|gb|ABV61663.1| possible alanine racemase [Bacillus pumilus SAFR-032]
          Length = 368

 Score = 36.6 bits (84), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 32/121 (26%), Gaps = 14/121 (11%)

Query: 53  YNAGVQDFFVTSVEEGVKLRLYTPQARIFV---------LYGIHPGQEKIIFDTNLIPVI 103
              G     V  V E   +  +     IF+         L  I    E I     +  V 
Sbjct: 53  EEMGASGLTVAKVGEAEVMAAHGLT-DIFIANQIVGETKLKRIRKLAESIHISFGIDCVE 111

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIIS 162
             V Q+                ++++ G  R G+  + +               L  I S
Sbjct: 112 H-VHQIEDV--FRGAEKKAEVLIEIEVGEERSGVIEESDFRQILQAIKTCDFVHLKGIFS 168

Query: 163 H 163
           H
Sbjct: 169 H 169


>gi|86360655|ref|YP_472543.1| putative amino acid processing protein [Rhizobium etli CFN 42]
 gi|86284757|gb|ABC93816.1| putative amino acid processing protein [Rhizobium etli CFN 42]
          Length = 366

 Score = 36.6 bits (84), Expect = 7.2,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 43/177 (24%), Gaps = 40/177 (22%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE- 66
           R  ID   L  N   + +                  G     P +    +    V  V  
Sbjct: 23  RPVIDEDRLAANIARVQSYMDE-------------HGL-NFRPHIKTHKIPALAVAQVAA 68

Query: 67  -----------EGVKLRLYTPQARIFV---------LYGIHPGQEKIIFDTNLIPVISSV 106
                      E            I +         L  +    E+I   ++L  V  S 
Sbjct: 69  GAKGINCQKVTEAEVFAEAGFN-DILITFNILGQQKLERLARLNERI---SDLKVVADSE 124

Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIIS 162
             +   +   S        ++ DTG  R G+ +  EA                 I++
Sbjct: 125 QTVDGLAAHFSGHKPLTVLVECDTGGGRCGVQTPDEAASLARRITAADGLTFGGIVT 181


>gi|163840434|ref|YP_001624839.1| diaminopimelate decarboxylase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953910|gb|ABY23425.1| diaminopimelate decarboxylase [Renibacterium salmoninarum ATCC
           33209]
          Length = 419

 Score = 36.6 bits (84), Expect = 7.4,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 83/291 (28%), Gaps = 63/291 (21%)

Query: 12  DLTALKNNWHSMNAL-------SGNARTAAVVKDN--AYGLGCEKIAPALYNAGVQDFFV 62
           DL  L+++  ++ A                 VK N  A      ++        +    V
Sbjct: 38  DLAHLRSHLVAIKAALSHPASGGSGVEILYAVKANPDA------EVVRTAAEI-LDGLEV 90

Query: 63  TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS--SVPQLTFYSKLMSCGV 120
           +S  E   +R   P AR  +  G  PG+      T L   +    V  +    +L +   
Sbjct: 91  SSGGEITHVRALLPDAR-LIFGG--PGKTDAELSTALAAGVHRFHVESVDELRRLNALAA 147

Query: 121 SHPYA------LQVDTGF----------------NRLGLSLQEALDFTHNSFNKKLGQLS 158
                      + +  G                 +  G+  +EA              L 
Sbjct: 148 EAGITAEILFRVNIQAGITSGNSSTAALTMGGVPSPFGMDPEEAALAAAQLETMPNITLH 207

Query: 159 LIISHLACADDPSSHVNS-VQLERFRTLISHYKGIEASLASSSGILLGPNYH----FQLT 213
            + +HLA   D ++       + R+    +   G+E S  +  G +          F  +
Sbjct: 208 GVHAHLASGVDSATGAAEAEDIARWARSFAAEHGLELSELNVGGGMSVDYLRTAEPFDWS 267

Query: 214 RPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264
             G  L    + + + +P               +   G  +S      L+R
Sbjct: 268 DYGSRL----NSLAEKYPE-----------FTFQIEPGRAISAYSGWYLSR 303


>gi|311899841|dbj|BAJ32249.1| hypothetical protein KSE_64890 [Kitasatospora setae KM-6054]
          Length = 481

 Score = 36.6 bits (84), Expect = 7.4,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 26/139 (18%)

Query: 9   LKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPAL----YNAGVQDFFV 62
           L +D  AL++N H+M A   +   R A          G   +APAL      AG     +
Sbjct: 108 LTLDAAALRHNLHTMAAWCRAAGVRLAP--------HGKTTMAPALWQAQLAAGAHAITL 159

Query: 63  TSVEEGVKLRLYTPQARIFVLYGI---HPGQEKIIFDTNLIP-------VISSVPQLTFY 112
            ++ +    R +  Q    +L        G   I  + +  P       V S+       
Sbjct: 160 ANLPQLRVARAHGVQR--LLLANTLLDPAGLAWIAGELDRDPDFAFASWVDSTDSVRRMD 217

Query: 113 SKLMSCGVSHPYALQVDTG 131
           + L + G + P  + V+ G
Sbjct: 218 AALRAAGATRPVEVIVELG 236


>gi|296141663|ref|YP_003648906.1| hypothetical protein Tpau_3996 [Tsukamurella paurometabola DSM
           20162]
 gi|296029797|gb|ADG80567.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
           20162]
          Length = 397

 Score = 36.6 bits (84), Expect = 7.4,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 26/150 (17%)

Query: 49  APALYNAGVQDFFVTSVEEGVKLRLYTPQ-----ARIFVLYGIHPGQEKIIFDTNLIPVI 103
           A    +A V+   V +++E ++ R          A   V     P  E  +F T ++P  
Sbjct: 48  ALLALHARVRGVAVDTLDEALESRELLRTWCMRGAPFLV-----PTAEAAVFTTGVLP-- 100

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163
              P       L+           V    + LGL+L EA+D T       L    L I+ 
Sbjct: 101 ---PTEDAARHLIQG---------VGPALDGLGLTLDEAVDLTARHTAAVLSGRRLAIAQ 148

Query: 164 LA--CADDPSSHVNSVQLERFRTLISHYKG 191
           L    A   +  + + Q ER+     H  G
Sbjct: 149 LGVEVAAAIAPELGADQRERWEAEGPHAAG 178


>gi|325918819|ref|ZP_08180902.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534965|gb|EGD06878.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 429

 Score = 36.2 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 24/127 (18%)

Query: 52  LYNAGVQDFF-VTSV--EEGVKLRLYTPQA---RIFVLYGIHPGQEKIIFDTNLIPVISS 105
           L +        V ++  +E  +L      A   RI  L                  V+ S
Sbjct: 143 LVDHNALRLGEVATLVLDEADRLLELGFGAELDRILALLPT-----------QRQSVLFS 191

Query: 106 VPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA 165
                  + L    +  P  + +D        + ++A      +     GQ + ++ HL 
Sbjct: 192 ATYPPAIAALAKRRLRDPLRITID-------ATPEQAPAIEQRALAVDAGQRTQLLRHLL 244

Query: 166 CADDPSS 172
                S 
Sbjct: 245 TEHGWSH 251


>gi|298487772|ref|ZP_07005813.1| alanine racemase, N-terminal domain family protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157864|gb|EFH98943.1| alanine racemase, N-terminal domain family protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 378

 Score = 36.2 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 14/159 (8%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLI 100
             +  A   AG     V++++E            +F    I PG+             L 
Sbjct: 48  LPVIQAQIAAGASGVTVSTLKEAEHCFAEGIN-DVFYAVAIAPGKLDQALKLRRNGCRLS 106

Query: 101 PVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLS 158
            +  SV               +    +++D   +R GL++ +   F    +  +    L 
Sbjct: 107 ILTDSVVAAQAIVAFGQRHDENFDVWIEIDCDGHRSGLTVDDPSLFDVARTLIEGGMHLR 166

Query: 159 LIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197
            +++H   + D  +       E  + L    + +  S A
Sbjct: 167 GVMTHAGSSYDLDTP------EALQALAEQERRLCVSAA 199


>gi|220926980|ref|YP_002502282.1| alanine racemase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219951587|gb|ACL61979.1| alanine racemase domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 359

 Score = 36.2 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 65/209 (31%), Gaps = 34/209 (16%)

Query: 11  IDLTALKNNWHSMNALSGNARTA----------AVVKDNAYGLGCEKIAPALYNAGVQDF 60
           IDL  ++ N   + A    A  A           V+            A     AG +  
Sbjct: 19  IDLDQVERNIARLQAACDAAGLANRPHIKTHKSPVL------------ARLQQEAGARGL 66

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKL--- 115
              ++ E   +      + I + Y +      E++      +P+  S         L   
Sbjct: 67  TCQTLGEAEVMAEAGL-SDILISYNLVGPEKLERLARLLRRMPLTVSADHPAVVEGLGEA 125

Query: 116 -MSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
             +        ++ DTG  R G+ +  EA+            + + +   L    +    
Sbjct: 126 AAAAERPLDVVVECDTGRARAGVATPAEAVALARMIAGTPALRFAGL---LLYPPEDGVQ 182

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGI 202
                L+  +  ++  +G++A + S+ G 
Sbjct: 183 ATQGFLDAVQAGLAG-EGLQARIVSTGGT 210


>gi|91976729|ref|YP_569388.1| alanine racemase-like [Rhodopseudomonas palustris BisB5]
 gi|91683185|gb|ABE39487.1| alanine racemase-like [Rhodopseudomonas palustris BisB5]
          Length = 360

 Score = 36.2 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 45/207 (21%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFVT 63
           L ID+  ++ N   + AL   A    V     +K          +A     AG +   +T
Sbjct: 18  LVIDMDRVERNIARVQALCDAA---GVANRPHIKT----HKSPLLAQMQIAAGAR--GIT 68

Query: 64  S--VEEGVKLRLYTPQARIFV------------LYGIHPGQEKIIFDTNLIPVISSVPQL 109
              + E   +        I +            L  +H  + +++   +   VI      
Sbjct: 69  CQKIGEAEVMADAGID-DILISYNLIGEEKMARLGALH-ARAEMVVAADNEVVI-----A 121

Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACAD 168
              +     G      ++ DTG  R G+    EA+    +            + +     
Sbjct: 122 GLPAAAARAGRPLGVVVECDTGRARAGVETPAEAIALARSIAASDGLIFKGFMLYPTETG 181

Query: 169 DPSSHVNSVQLERFRTLISHYKGIEAS 195
            P       Q +RF        GI A 
Sbjct: 182 WP-------QAQRF--FDEALAGIRAH 199


>gi|307327089|ref|ZP_07606278.1| 6-deoxyerythronolide-B synthase., Mycocerosate synthase [Streptomyces
            violaceusniger Tu 4113]
 gi|306887170|gb|EFN18167.1| 6-deoxyerythronolide-B synthase., Mycocerosate synthase [Streptomyces
            violaceusniger Tu 4113]
          Length = 3735

 Score = 36.2 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 15/115 (13%)

Query: 42   GLGC--EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL 99
            G G     +A  L  AG +          V L    PQA            E       +
Sbjct: 2118 GTGALGAHVARWLAQAGAEHL--------VLLGRRGPQAP----GAAALEDELTALGIRV 2165

Query: 100  IPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL 154
                  V      +++++        + +  G  R G S+  ALD     F+ K+
Sbjct: 2166 TTTACDVTDRAALAEVLASVPDLTAVVHL-AGTVRFGGSIGAALDEYAAVFDAKV 2219


>gi|119503505|ref|ZP_01625588.1| hypothetical protein MGP2080_03160 [marine gamma proteobacterium
           HTCC2080]
 gi|119460567|gb|EAW41659.1| hypothetical protein MGP2080_03160 [marine gamma proteobacterium
           HTCC2080]
          Length = 228

 Score = 36.2 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 19/157 (12%)

Query: 50  PALYNAGVQDFFVTSVEEGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ 108
            A + AG + F     +E  +  R          +     G  +      L   ++ V  
Sbjct: 46  RAAWEAGQRAFGENYAQEAEEKARRLDD----LTIEWHFIGPIQSNKTRGLAETMAWVHS 101

Query: 109 LTFYSKLMSCGVSHPYAL---------QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL 159
           +             P  L         ++    ++ G++  E               L  
Sbjct: 102 IDRLKIARRLSDQRPQHLPPLNLCLQVKLSDEPSKSGIAPSEIPALAAQITELPNLSLRG 161

Query: 160 IISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
           ++     A   ++     Q   F+ L +    ++   
Sbjct: 162 LM-----AIPAATSDYQQQRMAFKQLQTQLFELQKQH 193


>gi|298675499|ref|YP_003727249.1| diaminopimelate decarboxylase [Methanohalobium evestigatum Z-7303]
 gi|298288487|gb|ADI74453.1| diaminopimelate decarboxylase [Methanohalobium evestigatum Z-7303]
          Length = 426

 Score = 36.2 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 26/170 (15%)

Query: 16  LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN--AGVQDFFVTSVEEGVKLRL 73
           +++N+        +A      K N    G   I   L    AG   F    +   +   L
Sbjct: 41  IRDNFRRYKKAFPDADLFYAAKAN----GNLTILKILAEEGAGADVFSDGELYTAL---L 93

Query: 74  YTPQARIFVLYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC------------- 118
                   +  G      +  +   T +   + S  +L   S +                
Sbjct: 94  AGIPRDKILFNGNSKSDRELLMAVQTGVRVSVDSFDELNTLSSIAKNEGKVVDIAFRVNP 153

Query: 119 GVSHPYALQVDTGFN--RLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
            VS     ++ TG    + G+   E +     + +K       I  H+  
Sbjct: 154 DVSPKTHPKISTGLKTSKFGIPHDEVVSAYKQALDKPGVNPVGIHCHIGS 203


>gi|327482661|gb|AEA85971.1| TIM-barrel fold family protein [Pseudomonas stutzeri DSM 4166]
          Length = 201

 Score = 36.2 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 30/187 (16%)

Query: 56  GVQDFFVTSVEEGVKLRLYTPQARIFVL---YGIHPGQEKIIFDTNLIPVISSVPQLTFY 112
           G++DF    ++E +  +                I   + K I +      + SV +L   
Sbjct: 22  GLRDFGENYLQEALD-KQAELDDLPLTWHFIGPIQSNKTKAIAEHFDW--VHSVDRLKIA 78

Query: 113 SKLMSCG------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166
            +L          ++    + V    ++ G + QE              +L  ++   A 
Sbjct: 79  QRLSDQRPAALPPLNICLQVNVSGEASKSGCAPQEVQQLARAITALPRLRLRGLMCIPAP 138

Query: 167 ADDPSSHVNSVQLERFRTLISHYKGI-----EASLASS----SGILLGPNYHFQLTRPGI 217
           ++DP     + Q   F  L      +       S+  S    + I  G        R G 
Sbjct: 139 SEDP-----AEQRAAFARLRQLRDELALDLDTLSMGMSQDLEAAIAEGAT----WVRIGT 189

Query: 218 SLYGGTD 224
           +L+G  D
Sbjct: 190 ALFGARD 196


>gi|254255433|ref|ZP_04948749.1| hypothetical protein BDAG_04773 [Burkholderia dolosa AUO158]
 gi|124901170|gb|EAY71920.1| hypothetical protein BDAG_04773 [Burkholderia dolosa AUO158]
          Length = 398

 Score = 36.2 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 8/134 (5%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIP 101
           ++  A   AG +   V++++E  +      +  I    GI P +            +L  
Sbjct: 69  QVVDAQMKAGARGITVSTLKEAERFFAGGIR-DIVYAVGIAPSKLPQALALRRQGCDLKI 127

Query: 102 VISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSL 159
           V  SV                    +++D   +R G++   + L     +      QL  
Sbjct: 128 VADSVACADAIVAFGREHAERFDVWIEIDVDGHRSGIAPDGDRLLPVATTLVNGGMQLGG 187

Query: 160 IISHLACADDPSSH 173
           +I+H   + D  +H
Sbjct: 188 VIAHAGSSYDYDTH 201


>gi|212212809|ref|YP_002303745.1| ornithine decarboxylase [Coxiella burnetii CbuG_Q212]
 gi|212011219|gb|ACJ18600.1| ornithine decarboxylase [Coxiella burnetii CbuG_Q212]
          Length = 400

 Score = 36.2 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 67/185 (36%), Gaps = 17/185 (9%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI--HPGQEKIIFDTNLIP-VI 103
            +  A++  GV  F V S EE   ++ Y P A ++ ++ +       +  F+  +    +
Sbjct: 56  HVIQAVHAHGVTAFDVASYEEIRIIKEYAPGAELYFMHPVKSPHAIREAYFEYGVRHFSL 115

Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVD-----TGFN---RLGLSLQEALDFTHNSFNKKLG 155
             + +L    +           L++        FN   + G++L EA +       +K  
Sbjct: 116 DCLEELRKILRHTENAKDLCLHLRLAIPNTFAEFNLAEKFGINLHEAPELLKQL--RKAA 173

Query: 156 QLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRP 215
               +  H+            + +     +I+  + +E    +  G    P+ +  +  P
Sbjct: 174 YQLGVTFHVGSQCMHPDAY-RIAIRMADKVINEAQ-VEIEFFNVGG--GFPSIYPGMIPP 229

Query: 216 GISLY 220
            +++Y
Sbjct: 230 ALTIY 234


>gi|126175227|ref|YP_001051376.1| alanine racemase domain-containing protein [Shewanella baltica
           OS155]
 gi|125998432|gb|ABN62507.1| alanine racemase domain protein [Shewanella baltica OS155]
          Length = 232

 Score = 36.2 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 65/193 (33%), Gaps = 33/193 (17%)

Query: 51  ALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106
           A Y AG + F    V+EG +    L+   P      +  +   +  I+        + +V
Sbjct: 45  AAYQAGQRCFGENYVQEGAEKITALKEDFPDIEWHFIGPLQSNKTNIVAQHFDW--MHTV 102

Query: 107 PQLTFYSKLMS------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
            +     +L          ++    + +     + G+   + L             L  +
Sbjct: 103 SRDKIAQRLNDQRPAELAPLNVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGL 162

Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEAS----------LAS--SSGILLGPNY 208
           +     A   ++    +QL+ F  L + ++ +++           +++   + I  G   
Sbjct: 163 M-----AIPTATADTELQLKEFSMLNNLFQELKSHYPSVDTLSMGMSNDLDAAISCGST- 216

Query: 209 HFQLTRPGISLYG 221
              + R G +++G
Sbjct: 217 ---MVRIGSAIFG 226


>gi|229824759|ref|ZP_04450828.1| hypothetical protein GCWU000182_00107 [Abiotrophia defectiva ATCC
           49176]
 gi|229791088|gb|EEP27202.1| hypothetical protein GCWU000182_00107 [Abiotrophia defectiva ATCC
           49176]
          Length = 231

 Score = 36.2 bits (83), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 47/166 (28%), Gaps = 23/166 (13%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF-------VLYGIHPGQEKIIFDTN 98
            +        G+  F    V+E   LR    +  I        ++  +   + K +    
Sbjct: 39  VEAIREAIEYGINSFGENRVQE---LRE---KTEIIKDNLDWHLIGHLQTNKVKYVVGK- 91

Query: 99  LIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN------RLGLSLQEALDFTHNSFNK 152
            + +I S+  +     L          + V    N      + G++ ++A +F       
Sbjct: 92  -VSLIHSLENIRLAEALDKEAAKLGITVDVLAEINVAKEASKFGVNPEDAENFIREVSKF 150

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198
               +  +++         S  N     + + ++           S
Sbjct: 151 PNINIKGLMT--VAPYTDISEENRKYFRQLKKIMVDLNSKNIHNVS 194


>gi|332531595|ref|ZP_08407492.1| alanine racemase domain protein [Hylemonella gracilis ATCC 19624]
 gi|332038958|gb|EGI75387.1| alanine racemase domain protein [Hylemonella gracilis ATCC 19624]
          Length = 255

 Score = 36.2 bits (83), Expect = 8.6,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 61/195 (31%), Gaps = 21/195 (10%)

Query: 47  KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARI--FVLYGIHPGQEKIIFDTNLI-PVI 103
           +   A + AG+  F    ++E V          +    +  I   + + + +       +
Sbjct: 48  EAVRAAHQAGLTAFGENYIQEAVAKTAALADLPLEWHCIGPIQSNKTRPVAEHFAWAQTV 107

Query: 104 SSVPQLTFYSKLMSCGVS---HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
                    S+     +        + VD G  + G++  E  +           +L  +
Sbjct: 108 DRFKIAQRLSEQRPAELPPLQICLQVNVDGGPTKAGIAPHELSELVLAVRRLPRLRLRGL 167

Query: 161 ISHLACADDPSSHVNSVQ--LER----FRTLISHYKGIEA-----SLASSSGILLGPNYH 209
           +    C  DP     ++Q    R    F  L + + G +      S+  S+ +       
Sbjct: 168 M----CIPDPQPDAAAMQAVFARARTLFDDLRAGWDGPDPLPDTLSMGMSADLEAAIAAG 223

Query: 210 FQLTRPGISLYGGTD 224
             L R G +L+G   
Sbjct: 224 STLVRIGSALFGARP 238


>gi|319406162|emb|CBI79799.1| lysine/ornithine decarboxylase [Bartonella sp. AR 15-3]
          Length = 377

 Score = 36.2 bits (83), Expect = 8.7,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 13/131 (9%)

Query: 2   HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGVQDF 60
           H +E   L +DL  +  N+ +       +R    +K N A      +I   L + G   F
Sbjct: 13  HRSEGPCLVVDLDVVHENYLNFEKALPQSRIFYAIKANPA-----PEILRLLVSLG-SSF 66

Query: 61  FVTSVEE---GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117
              S+ E    ++       A           +  I         + +V       K+  
Sbjct: 67  DAASIAEIEMALE---AGATADRISFGNTIKKERDIARAYAFGVSLYAVDCFEEVEKVAC 123

Query: 118 CGVSHPYALQV 128
                    +V
Sbjct: 124 AAPGARVFCRV 134


>gi|329890839|ref|ZP_08269182.1| hypothetical protein BDIM_25470 [Brevundimonas diminuta ATCC 11568]
 gi|328846140|gb|EGF95704.1| hypothetical protein BDIM_25470 [Brevundimonas diminuta ATCC 11568]
          Length = 253

 Score = 36.2 bits (83), Expect = 8.8,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 25/207 (12%)

Query: 46  EKIAPALYNAGVQDFFVTSVEEGVKLRL-----YTPQARIFVLYGIHPGQEKIIFD-TNL 99
            +I    + AGV DF    ++E    R           R  V+  +   + K +    + 
Sbjct: 55  AEILRLAWAAGVTDFGENKLQEA---RDKAEAMADLPMRWHVVGHLQSNKVKYLTRLADE 111

Query: 100 IPVISSVPQLTFY-SKLMSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQ 156
              + S+        +L + G      +QV+T    ++ GL   +ALDF          +
Sbjct: 112 FHALDSLKLAEVLNKRLETDGRDMKVYVQVNTSGEESKFGLHPDDALDFIERLEAFPRLK 171

Query: 157 LSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL---- 212
              +++    +DD             R+L    + I+A +    G+ +G    ++L    
Sbjct: 172 PQGLMTLAIFSDDADR--VRPCFTLLRSLRDRAERIDARIT---GLSMGMTGDYELAVRE 226

Query: 213 ----TRPGISLYGGTDKINKSHPMQTV 235
                R G +++G     N  +     
Sbjct: 227 GATVVRVGQAIFGPRPTPNAHYWPGLA 253


>gi|167644230|ref|YP_001681893.1| Orn/DAP/Arg decarboxylase 2 [Caulobacter sp. K31]
 gi|167346660|gb|ABZ69395.1| Orn/DAP/Arg decarboxylase 2 [Caulobacter sp. K31]
          Length = 420

 Score = 36.2 bits (83), Expect = 8.8,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 81/262 (30%), Gaps = 47/262 (17%)

Query: 36  VKDNAYGLGCEK---IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP--GQ 90
           VK N           +   L +AGV+ F V S+ E   +  + P +R+  ++ +      
Sbjct: 47  VKAN-------PSPWVIRELADAGVRSFDVASLNEIELVSQHAPGSRMAFMHPVKSRVAI 99

Query: 91  EKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGF----------NRLGLSL 139
               FD  +     S       +K+    G +    L V  G            + G+  
Sbjct: 100 SAAYFDHGVRT--FSFDTHEELAKIQDATGAAKDLNLIVRMGVQADGAAYSLSGKFGVEP 157

Query: 140 QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS 199
             A      +  +    L  +  H+       +   +   +  R L+    G+ A +   
Sbjct: 158 HNAPALL-LAARRATQDLMGVSFHVGSQCMRPTAYQAAMAQASRALVRA--GVLADVVDV 214

Query: 200 SGILLGPNYHFQLTRPGISLY------GGTD-----KINKSHPMQTVVTAEARIILIR-K 247
            G    P+ +  +  P +S Y      G  D                + AEA  +L++ +
Sbjct: 215 GG--GFPSIYPGMVPPDMSEYMAAIDRGFNDMMVHESTQLWCEPGRALVAEASSVLVKVE 272

Query: 248 ALAGEL-----VSYGGQKKLTR 264
              G+       SYG       
Sbjct: 273 LKKGDALYLNDGSYGSLFDAAH 294


>gi|300119999|emb|CBK19553.2| unnamed protein product [Blastocystis hominis]
          Length = 238

 Score = 36.2 bits (83), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 106 VPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIIS 162
           V      S L      +   +++DTG++R G+   +    +                + S
Sbjct: 43  VDLEEHVSLLEGTKGHYNLFIKIDTGYHRAGIDASDFDSIIKLATRITQSPNCHFLGLYS 102

Query: 163 HLACADD 169
           H   + D
Sbjct: 103 HAGHSYD 109


>gi|163758927|ref|ZP_02166014.1| putative ornithine, dap, or arginine decarboxylase protein [Hoeflea
           phototrophica DFL-43]
 gi|162284217|gb|EDQ34501.1| putative ornithine, dap, or arginine decarboxylase protein [Hoeflea
           phototrophica DFL-43]
          Length = 377

 Score = 36.2 bits (83), Expect = 8.9,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 60/204 (29%), Gaps = 25/204 (12%)

Query: 9   LKIDLTALKNNWHSMNALSGNARTAAVVKDN-AYGLGCEKIAPALYNAGV--QDFFVTSV 65
           L +DL  +++N+ S      ++     VK N A      +I   L   G       V  +
Sbjct: 20  LVVDLDVVRDNFVSFRKALPDSSIYYAVKANPA-----PEILRLLAGLGSNFDCASVAEI 74

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125
           E  + L      +           +  I     L   + +V       K+          
Sbjct: 75  E--MAL-KAGATSARVSYGNTIKKERDIARAHALGVTLFAVDSHEEVEKIARAAPGARVF 131

Query: 126 LQVDTG-------FNR-LGLSLQEALD---FTHNSFNKKLGQLSLIISHLACADDPSSHV 174
            +V T         +R  G   Q A+D   + H       G    + S +   D   + +
Sbjct: 132 CRVLTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGLVSHGVSFHVGSQMTKLDAWDAAL 191

Query: 175 NSVQLERFRTLISHYKGIEASLAS 198
           +      F  L     GI   + +
Sbjct: 192 SDA-RRVFDKLAQQ--GIHLKMVN 212


>gi|163739655|ref|ZP_02147064.1| Putative Ornithine decarboxylase [Phaeobacter gallaeciensis BS107]
 gi|161387114|gb|EDQ11474.1| Putative Ornithine decarboxylase [Phaeobacter gallaeciensis BS107]
          Length = 383

 Score = 36.2 bits (83), Expect = 9.0,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 25/133 (18%)

Query: 36  VKDN---AYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92
           VK N   A       +   L  AG+  F V S  E   +R  +P A   V++  +P +  
Sbjct: 51  VKANPHPA-------VLSNLVAAGITGFDVASPAEMDAVRAASPDA---VMHYNNPVRSD 100

Query: 93  IIFDTNLIPVIS--SVPQLTFYSKLMSCGVSHPYALQV---------DTGFNRLGLSLQE 141
           +     +   ++  SV + +   KL     S   A++          D G ++ G     
Sbjct: 101 VEIAAGIAHGVASWSVDEPSELDKLADVPKSCEIAVRFALPVAGAAYDFG-SKFGAEPDM 159

Query: 142 ALDFTHNSFNKKL 154
           A++       +  
Sbjct: 160 AIELLKRVAAEGW 172


>gi|17988891|ref|NP_541524.1| metal-activated pyridoxal protein [Brucella melitensis bv. 1 str.
           16M]
 gi|225629220|ref|ZP_03787253.1| metal-activated pyridoxal protein [Brucella ceti str. Cudo]
 gi|17984718|gb|AAL53788.1| metal-activated pyridoxal enzyme [Brucella melitensis bv. 1 str.
           16M]
 gi|225615716|gb|EEH12765.1| metal-activated pyridoxal protein [Brucella ceti str. Cudo]
          Length = 360

 Score = 36.2 bits (83), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 11/141 (7%)

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
                M+        ++ DTG  R G+ +  +A +  H            ++++ A    
Sbjct: 126 LAQHFMNEKRPLKVLVECDTGMGRCGVQTPGQARELAHIIEKSAGLCFGGLMTYPATG-- 183

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT----RPGISLY--GGT 223
                    L   R L++   GI     SS G         +      RPG  +Y     
Sbjct: 184 -RGDEAERWLREARDLLAA-DGIACETISSGGTPDMWRIPAETVVTEYRPGTYIYFDRYQ 241

Query: 224 DKINKSHPMQTVVTAEARIIL 244
                +      +T  A ++ 
Sbjct: 242 VAEGAATINDCALTVLATVVS 262


>gi|86747509|ref|YP_484005.1| hypothetical protein RPB_0383 [Rhodopseudomonas palustris HaA2]
 gi|86570537|gb|ABD05094.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
           HaA2]
          Length = 221

 Score = 36.2 bits (83), Expect = 9.1,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 23/143 (16%)

Query: 32  TAAVVK---DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRLYTPQARIFVLY 84
             AV K    +A       +      AG + F    V+E       L    P   + ++ 
Sbjct: 32  LIAVSKTFEADA----ILPV----LAAGQRVFGENRVQEAKAKWPPLLESHPDTALHLIG 83

Query: 85  GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM----SCGVSHPYALQVDTGFNR--LGLS 138
            +   + K      L   I SV + +    L     + G +    +Q++TG      G++
Sbjct: 84  PLQSNKAKEAVA--LFDAIHSVDRESLCEALAKVLPASGRAVELFVQINTGEEPQKAGIA 141

Query: 139 LQEALDFTHNSFNKKLGQLSLII 161
            Q+A  F     ++    ++ ++
Sbjct: 142 PQDADAFIAACRDRFGLTIAGLM 164


>gi|330972631|gb|EGH72697.1| hypothetical protein PSYAR_19276 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 228

 Score = 36.2 bits (83), Expect = 9.3,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 50/240 (20%)

Query: 16  LKNNWHSMNALSGNARTAA------VVKDNAYGLGCEKIAPA--------LYNAGVQDFF 61
           +  N  ++     +A  AA      V        G   ++           YNAG++DF 
Sbjct: 4   IAANISTLEQRIRDAALAAERDPASV--------GLLAVSKTKPASDLREAYNAGLRDFG 55

Query: 62  VTSVEEGV--KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
              ++E +  +L L         +  I   + + I +      + SV +L    +L    
Sbjct: 56  ENYLQEALGKQLELSDLPLCWHFIGPIQSNKTRAIAENFDW--VHSVDRLKIAQRLSEQR 113

Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173
                 ++    + V    ++ G + Q+              +L  ++   A  +     
Sbjct: 114 PEALEPLNICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLRLRGLM---AIPEPTDDP 170

Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH---------FQLTRPGISLYGGTD 224
             + Q   F  + +  + +  +L      L     H             R G +L+G  D
Sbjct: 171 --AAQDASFAAVRALQEQLNLALD----TLSMGMSHDLEAAIAQGATWVRIGTALFGARD 224


>gi|260544654|ref|ZP_05820475.1| alanine racemase domain-containing protein [Brucella abortus NCTC
           8038]
 gi|260756503|ref|ZP_05868851.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
           str. 870]
 gi|260759935|ref|ZP_05872283.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
           str. 292]
 gi|260763173|ref|ZP_05875505.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882323|ref|ZP_05893937.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
           str. C68]
 gi|260097925|gb|EEW81799.1| alanine racemase domain-containing protein [Brucella abortus NCTC
           8038]
 gi|260670253|gb|EEX57193.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
           str. 292]
 gi|260673594|gb|EEX60415.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676611|gb|EEX63432.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
           str. 870]
 gi|260871851|gb|EEX78920.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
           str. C68]
          Length = 300

 Score = 36.2 bits (83), Expect = 9.3,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 11/141 (7%)

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
                M+        ++ DTG  R G+ +  +A +  H            ++++ A    
Sbjct: 66  LAQHFMNEKRPLKVLVECDTGMGRCGVQTPGQARELAHIIEKSAGLCFVGLMTYPATG-- 123

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT----RPGISLY--GGT 223
                    L   R L++   GI     SS G         +      RPG  +Y     
Sbjct: 124 -RGDEAERWLREARDLLAA-DGIACETISSGGTPDMWRIPAETVVTEYRPGTYIYFDRYQ 181

Query: 224 DKINKSHPMQTVVTAEARIIL 244
                +      +T  A ++ 
Sbjct: 182 VAEGAATINDCALTVLATVVS 202


>gi|160935746|ref|ZP_02083121.1| hypothetical protein CLOBOL_00636 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441490|gb|EDP19200.1| hypothetical protein CLOBOL_00636 [Clostridium bolteae ATCC
           BAA-613]
          Length = 370

 Score = 36.2 bits (83), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 102 VISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI 160
           V   + Q    S + +      P  + V+ G NR G+ ++   +   ++ +    +L  +
Sbjct: 116 VEDDLAQFEALSGVCVEHNAVLPMLVDVNMGMNRTGVPIERLEELYRSASSLPGLRLCGM 175

Query: 161 ISHLACADDPSSHVNSVQLE 180
             H    +  +      Q +
Sbjct: 176 --HCYDGNHNNKDAAVRQAQ 193


>gi|153001553|ref|YP_001367234.1| alanine racemase domain-containing protein [Shewanella baltica
           OS185]
 gi|151366171|gb|ABS09171.1| alanine racemase domain protein [Shewanella baltica OS185]
          Length = 232

 Score = 36.2 bits (83), Expect = 9.5,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 64/197 (32%), Gaps = 41/197 (20%)

Query: 51  ALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE------------KIIFDTN 98
           A Y AG + F    V+EG +        +I  L G  P  E             I+    
Sbjct: 45  AAYQAGQRCFGENYVQEGAE--------KIIALKGDFPDIEWHFIGPLQSNKTSIVAQHF 96

Query: 99  LIPVISSVPQLTFYSKLMS------CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
               + +V +     +L          ++    + +     + G+   + L         
Sbjct: 97  DW--MHTVSRDKIAQRLNDQRPAELAPLNICIQINISAEDTKSGIDAAQMLPLAELIAQL 154

Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ- 211
               L  ++     A   ++    +QL+ F  L + ++ +++   +   + +G +     
Sbjct: 155 PNLALRGLM-----AIPTATADTELQLKEFSMLNNLFQELKSHYPNVDTLSMGMSNDLDA 209

Query: 212 -------LTRPGISLYG 221
                  + R G +++G
Sbjct: 210 AISCGSTMVRIGSAIFG 226


>gi|323702134|ref|ZP_08113801.1| alanine racemase domain protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323532821|gb|EGB22693.1| alanine racemase domain protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 226

 Score = 36.2 bits (83), Expect = 9.5,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 40/233 (17%)

Query: 16  LKNNWHSMN-----------ALSGNARTAAVVKDNAYGLGCEKIAPA--LYNAGVQDFFV 62
           +  N   +                  +  AV K+          A A     AG+ D   
Sbjct: 3   IVENITVIKNEIADAALRAGRQPNEVKIIAVTKN-------VAAAKAQEAVRAGLTDLGE 55

Query: 63  TSVEEGVKLRLYTPQ---ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY----SKL 115
             V+E   L+    +   AR  ++  +   + K I D   + +I S+ + +       + 
Sbjct: 56  NRVQE---LQNKFSEVTGARWHLIGHLQSNKVKYIVDK--VDLIHSLDRWSLALEIDRRA 110

Query: 116 MSCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS- 172
              G      +QV+      + GL + E  DF   +   +   +  +++      DP   
Sbjct: 111 REAGKVLSALVQVNVAKETTKFGLYVNEVKDFVTEAATLRGIYIRGLMTIAPLVQDPEEV 170

Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ----LTRPGISLYG 221
                QL +    +    GI+     S G+        +    + R G +++G
Sbjct: 171 RPVFRQLRQIAEDLKEIPGIKMEHL-SMGMTNDYRIAVEEGATMVRIGTAIFG 222


>gi|238487742|ref|XP_002375109.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|317143360|ref|XP_001819434.2| hypothetical protein AOR_1_362154 [Aspergillus oryzae RIB40]
 gi|220699988|gb|EED56327.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 454

 Score = 36.2 bits (83), Expect = 9.6,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 71  LRLYTPQAR-IFVLYGIH--PGQE--KIIFDTNLIP-----VISSVPQLTFYSKLMS-CG 119
           LR +  + R + +LYGI   P Q     +    L P     +I    Q+ F        G
Sbjct: 99  LREFQSKGRKVNILYGIPLVPSQVSRLALAAAELGPDSVSVMIDHPDQIKFLDTFSRIAG 158

Query: 120 VSHPYALQVDTGFNRLGLSLQE-----ALDFTHNSFNKKLGQLSLIISHLACAD 168
            +    L+VD G++R GL  +                   G+L  I SH + + 
Sbjct: 159 FAAGVFLKVDCGYHRAGLPPRAMDKGGLFSKLEELEKTGAGRLVGIYSHSSLSY 212


>gi|58579224|ref|YP_197436.1| diaminopimelate decarboxylase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417850|emb|CAI27054.1| Diaminopimelate decarboxylase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 424

 Score = 36.2 bits (83), Expect = 9.7,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 74/225 (32%), Gaps = 69/225 (30%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVK-----------------DNAYGLGCEKIAPALY 53
            L A+KNN+      L  N+     VK                  +A             
Sbjct: 42  SLNAIKNNYIQFKENLPNNSIICYAVKSNSNLSILSLLSSLGSGADA------------- 88

Query: 54  NAGVQDFFVTSVEEGVKLRLYTPQARI----FVLYGI--HPGQEKIIFDTNLIPV-ISSV 106
                      V EG ++R     A I     V  G+     +     D  ++ + + S+
Sbjct: 89  -----------VSEG-EIRRA-ITAGISPNKIVFSGVGKTEQEISFALDNRILQLNVESI 135

Query: 107 PQLTFYSKL-MSCGVSHPYALQVD------------TGF--NRLGLSLQEALDFTHNSFN 151
            +L   +K+     +  P +++++            TG   N+ G+  +E+LD   NS  
Sbjct: 136 EELQLINKISYHKNIIAPVSIRINPNINANTNDKITTGLKVNKFGI-PEESLDQVFNSSL 194

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
               ++  I  H+      +  +    +++ + ++  ++     +
Sbjct: 195 TN-IKIIGISVHIGS-QIANLGIFQNTIDKVKRIVKIFEQHNIHI 237


>gi|57239261|ref|YP_180397.1| diaminopimelate decarboxylase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161340|emb|CAH58263.1| putative diaminopimelate decarboxylase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 420

 Score = 36.2 bits (83), Expect = 9.7,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 74/225 (32%), Gaps = 69/225 (30%)

Query: 12  DLTALKNNWHSMNA-LSGNARTAAVVK-----------------DNAYGLGCEKIAPALY 53
            L A+KNN+      L  N+     VK                  +A             
Sbjct: 38  SLNAIKNNYIQFKENLPNNSIICYAVKSNSNLSILSLLSSLGSGADA------------- 84

Query: 54  NAGVQDFFVTSVEEGVKLRLYTPQARI----FVLYGI--HPGQEKIIFDTNLIPV-ISSV 106
                      V EG ++R     A I     V  G+     +     D  ++ + + S+
Sbjct: 85  -----------VSEG-EIRRA-ITAGISPNKIVFSGVGKTEQEISFALDNRILQLNVESI 131

Query: 107 PQLTFYSKL-MSCGVSHPYALQVD------------TGF--NRLGLSLQEALDFTHNSFN 151
            +L   +K+     +  P +++++            TG   N+ G+  +E+LD   NS  
Sbjct: 132 EELQLINKISYHKNIIAPVSIRINPNINANTNDKITTGLKVNKFGI-PEESLDQVFNSSL 190

Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196
               ++  I  H+      +  +    +++ + ++  ++     +
Sbjct: 191 TN-IKIIGISVHIGS-QIANLGIFQNTIDKVKRIVKIFEQHNIHI 233


>gi|161620802|ref|YP_001594688.1| alanine racemase [Brucella canis ATCC 23365]
 gi|161337613|gb|ABX63917.1| Alanine racemase [Brucella canis ATCC 23365]
          Length = 355

 Score = 35.8 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 11/141 (7%)

Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADD 169
                M+        ++ DTG  R G+ +  +A +  H            ++++ A    
Sbjct: 121 LAQHFMNEKRPLKVLVECDTGMGRCGVQTPGQARELAHIIEKSAGLCFGGLMTYPATG-- 178

Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT----RPGISLY--GGT 223
                    L   R L++   GI     SS G         +      RPG  +Y     
Sbjct: 179 -RGDEAERWLREARDLLAA-DGIACETISSGGTPDMWRIPAETVVTEYRPGTYIYFDRYQ 236

Query: 224 DKINKSHPMQTVVTAEARIIL 244
                +      +T  A ++ 
Sbjct: 237 VAEGAATINDCALTVLATVVS 257


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.177    0.574 

Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,436,231,356
Number of Sequences: 14124377
Number of extensions: 456272635
Number of successful extensions: 1114609
Number of sequences better than 10.0: 4272
Number of HSP's better than 10.0 without gapping: 5208
Number of HSP's successfully gapped in prelim test: 1952
Number of HSP's that attempted gapping in prelim test: 1080471
Number of HSP's gapped (non-prelim): 7712
length of query: 370
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 230
effective length of database: 2,865,380,850
effective search space: 659037595500
effective search space used: 659037595500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 83 (36.2 bits)